BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780701|ref|YP_003065114.1| putative two-component sensor
histidine kinase transcriptional regulatory protein [Candidatus
Liberibacter asiaticus str. psy62]
         (495 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 495/495 (100%), Positives = 495/495 (100%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA
Sbjct: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
           NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC
Sbjct: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM
Sbjct: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK
Sbjct: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH
Sbjct: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS
Sbjct: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV
Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF
Sbjct: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480

Query: 481 IPEDNHESTQYKCYA 495
           IPEDNHESTQYKCYA
Sbjct: 481 IPEDNHESTQYKCYA 495


>gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
 gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
          Length = 518

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/479 (42%), Positives = 283/479 (59%)

Query: 5   RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64
           R  + +++   ++     LG        FD E   L  ++    +  +PL  L+VA I  
Sbjct: 19  RAKRRREMARSVNDVRSRLGAPENWYTSFDLERQHLFADTRINAAYAVPLLALIVAAISV 78

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
            +        W  +TL  +   +        +         WR     G    G  W   
Sbjct: 79  LWINPIFIGAWFAVTLCTHFMMVITSHSYEKAPSDQKARIYWRRRFAFGDFIYGCSWASF 138

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            L+   + + +   I+  ATLLI ++++ + +  LP  +  S  P+ + ++   +  +  
Sbjct: 139 FLLPQTSESGDGFVIFHFATLLIVVAMNTMQSATLPKCLLASTLPMTLIVTVSFLQQVTP 198

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           +  +LA M   A  FF  +   L K+   +L  +A+KD LI ELE A ++SDE R+RAE 
Sbjct: 199 IHYTLAAMAIGAQGFFLILGNQLLKNANTMLEYRADKDHLIVELESANAMSDEARRRAEA 258

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            NLAKSRFLA+MSHELRTPLNAILGFSE+++ E +G ++N+ Y+ Y  DIH SGQHLLNL
Sbjct: 259 ANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGKMHNKNYQSYAEDIHGSGQHLLNL 318

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           INEILDLSRIEAGR+EL E  I L DIV EC  M+++RA+ K I +    +P L  VWAD
Sbjct: 319 INEILDLSRIEAGRHELHEEPIFLDDIVEECGTMMKVRAKAKTISLHHTHEPDLPRVWAD 378

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E+ +RQV+LNLLSNAVKFT + G V + VG TS  GQY+SIKD GPGI E EIPTVL +F
Sbjct: 379 ERALRQVVLNLLSNAVKFTPVNGEVWIKVGPTSDGGQYVSIKDTGPGIPEDEIPTVLEAF 438

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           GQGS AIK+AE G GLGL I Q+++  H G+F ++SK  EG EVI  LP  R++N+ P+
Sbjct: 439 GQGSHAIKTAEPGTGLGLSIVQALVNMHDGKFSLKSKPGEGTEVIVTLPRARIMNYSPD 497


>gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 516

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 208/477 (43%), Positives = 287/477 (60%), Gaps = 3/477 (0%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                LG        F+ E   L  ++    +  +PL VL+V  I   +        W +
Sbjct: 32  NVRSRLGTSDRQHSTFELERQHLFADTRINAAFAVPLLVLIVTAISVIWLNPFFLGAWLI 91

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           +TL  +   +        +         WR    +G +  G  W +  L+       +  
Sbjct: 92  VTLCTHLLMVVTCHSYERAPSDQKARIYWRRRFTLGDLLYGCSWAVFFLLPRSDNAGDGF 151

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I+  ATLLI ++++ + +  LP  +  S  P+ + ++   +  +  +  +LA M   A 
Sbjct: 152 VIFHFATLLIVVAMNTMQSATLPRCLLASTLPMTLIVTASFLQQIDPIHYTLAAMAIGAQ 211

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            FF  +   L K+   +L  +AEKD LIAELE A ++SDE R+RAE  N+AKSRFLA+MS
Sbjct: 212 GFFFILGNQLLKNANTMLEYRAEKDHLIAELETANAMSDEARRRAEAANVAKSRFLATMS 271

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAILGFSE+++ E +GP+ N+TYK Y  DIH SGQHLLNLINEILDLSRIEAG
Sbjct: 272 HELRTPLNAILGFSEIMKDEVLGPMKNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAG 331

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           R+EL E ++ L ++V EC  M+ +RA  KNI +   ++P +  VWADE+ +RQV+LNL+S
Sbjct: 332 RHELQEESLYLEEVVDECGSMMTVRANAKNIMLHHTLEPDMPRVWADERALRQVVLNLIS 391

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT +GG VH+ VG TS  GQY+SI D GPGI E EIPTVL +FGQGS AIKSAE G
Sbjct: 392 NAVKFTPVGGEVHIKVGRTSDDGQYVSITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPG 451

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE---DNHESTQY 491
            GLGL I Q+++  H G+F+I+S+L  G E I  LP  RV+N+ P+    + EST +
Sbjct: 452 TGLGLSIVQALVGMHDGKFVIKSQLGVGTEAIMSLPRARVMNYSPDVVWADTESTDF 508


>gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
 gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
          Length = 512

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 214/464 (46%), Positives = 294/464 (63%)

Query: 15  LISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74
            +     HLG   P+   F  E + L  ++    +  +P+  L++A I T + Q     +
Sbjct: 33  TLKNVKLHLGAPDPTAAQFQIERLHLFADTRISAAYAVPMLALIIAGISTLWIQPIHVAI 92

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W  IT+ ++A  +        +  +      W     +G    G CW    L+       
Sbjct: 93  WCSITIGMHAFMVFTCSSYERASSEDRARSRWLPRFTLGDFVYGACWASFFLLPHSAAAT 152

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
           +   +++ A +LI ++++ +    +P A+  S  P+ +A+S   +     +  +LA M  
Sbjct: 153 DGFMVFQFAAMLIVVAMNTMQAATIPRALMASTLPITIAISASFLQQPSPIHYTLAAMAI 212

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A  FF  +   L K+   IL  +AEKD LI+ELE A +LSDE+R+RAE  N+AKSRFLA
Sbjct: 213 GAQGFFLILGNQLIKNANMILEYRAEKDHLISELETANALSDESRRRAEAANMAKSRFLA 272

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAILGFSEV++ E +GP+ NE YK Y  DIH SGQHLLNLINEILDLSRI
Sbjct: 273 TMSHELRTPLNAILGFSEVMKDEVLGPMQNEQYKSYAADIHGSGQHLLNLINEILDLSRI 332

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGR+EL E  IS+ +IV EC+ M+Q+RA ++NI +   ++  +  VWADE+ +RQV+LN
Sbjct: 333 EAGRHELQEEEISVTEIVEECLNMMQIRADDRNITLHNHLEKEMPKVWADERAVRQVVLN 392

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT IGG V +TVGWTSG GQY+S+KDNGPGI E EIP V+ +FGQGS+AIKSA
Sbjct: 393 LLSNAVKFTPIGGDVRITVGWTSGGGQYVSVKDNGPGIPEDEIPVVMEAFGQGSMAIKSA 452

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           EQG GLGL I Q+++  HGG+F +RSK+ EG E +  LP +RVL
Sbjct: 453 EQGTGLGLSIVQALVNMHGGKFTLRSKMHEGTEALMTLPASRVL 496


>gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 511

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 263/496 (53%), Positives = 345/496 (69%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           +SR ++ K V   +  T   L     +   FDRE++ LH++++   +  LPL V L++ I
Sbjct: 16  KSRNHRNKAVSKAVRATRQRLQTGSSAPAGFDREMLLLHIDAVLHGAIALPLLVGLISAI 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + ++ P   +W L+ L+ +A  + L +K    +I   +V +WR   L  Q+ +GLCW 
Sbjct: 76  GVYLSEEPGILLWGLMALSAHAVTVYLARKAKQQNIGAEKVAIWRRRFLASQLLMGLCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L + G        +++   L IAL+ +A+  F+L  A+  +F PVV AL   ++ + 
Sbjct: 136 IFALQDCGACGEIQFALFEGTGLFIALAATAMGTFLLRNALVYTFLPVVGALGFSSLTTG 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             + + L G+L+ +L F  ++T  + K+NV ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DPIHVGLTGILSLSLVFLAFMTERMNKANVHILSMQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GPLNN TYKEY  DIHRSG+HLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLNNPTYKEYTVDIHRSGEHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAGRYEL+E A++L++I  +CI M+QLRA+ KNI I  + + ++ SVW
Sbjct: 316 NLINEILDLSRIEAGRYELNEEAVNLVEIAEDCIGMVQLRARGKNITIEPQFEQAMPSVW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DEK MRQV LNLLSNAVKFT  GG + V VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 IDEKAMRQVALNLLSNAVKFTPAGGEITVKVGWTAGGGQYISIKDNGPGIPEEEIPIVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF++RSKLREG E IAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLREGTEAIAILPPRRVLQSLP 495

Query: 483 ---EDNHESTQYKCYA 495
              +    + + K +A
Sbjct: 496 PVEDAPSPARRRKSFA 511


>gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 511

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 289/496 (58%), Positives = 363/496 (73%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ +++ S+ + + I+PLFV+++  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSTFDRDVLKMYIASMLQGATIMPLFVVIITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FTQ+     W+L+TL+ +  N+ L ++    +I       WR  LL GQ  +G CW 
Sbjct: 76  GVYFTQDTRLLFWALMTLSCHTGNILLARRARRQEITAESARKWRRLLLSGQFLVGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV ++F P V+AL  ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL G+  T L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495

Query: 483 ---EDNHESTQYKCYA 495
              E    + + K +A
Sbjct: 496 AVEEAQAVARKRKSFA 511


>gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 511

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 289/496 (58%), Positives = 362/496 (72%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ +++ S+ + + I+PLFV+++  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYIASMLQGATIMPLFVVIITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FTQ+     W+L+TL  +  N+ L ++    +I       WR  LL GQ  +G CW 
Sbjct: 76  GVYFTQDTRLLFWALLTLTCHTGNILLARRARRQEITSESARKWRRLLLSGQFLVGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV ++F P V+AL  ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL G+  T L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495

Query: 483 ---EDNHESTQYKCYA 495
              E    + + K +A
Sbjct: 496 AVEEAQAVARKRKSFA 511


>gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 511

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 291/496 (58%), Positives = 364/496 (73%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ ++V S+ + + I+PLFV+++  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLDMYVASVLQGATIMPLFVVIITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FT++     W+L+TL  +A N+ L ++    +I       WR  LL GQ  IG CW 
Sbjct: 76  GVYFTEDTQLIFWALLTLTCHAGNILLARRARRQEITAESARKWRRLLLSGQFLIGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV  +F P V+AL+ ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLAAFSPAVLALAAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL G++ T L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTGLVTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPIVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495

Query: 483 ---EDNHESTQYKCYA 495
              E    + + K +A
Sbjct: 496 AVEEAQAVARKRKSFA 511


>gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 289/496 (58%), Positives = 364/496 (73%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ +++ S+ + + I+PLFV+++  +
Sbjct: 18  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYIASMLQGATIMPLFVVIITAL 77

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FTQ+     W+L+TL  +A N+ L ++  + +I       WR  LL+GQ  +G CW 
Sbjct: 78  GVYFTQDTRLLFWALLTLTCHAGNILLARRARHQEITSESAGKWRRLLLLGQFLVGCCWA 137

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV ++F P V+AL  ++ +S 
Sbjct: 138 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 197

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL  +  T L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 198 DLLEISLTALFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 257

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 258 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 317

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 318 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 377

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 378 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 437

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 438 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 497

Query: 483 ---EDNHESTQYKCYA 495
              E    + + K +A
Sbjct: 498 AVEEAQAVARKRKSFA 513


>gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 290/496 (58%), Positives = 362/496 (72%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ ++V S+ + + ++PLFV+++  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLNMYVASVLQSASLMPLFVVIITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FTQN     W+L+TL  +  N+ L ++    +I       WR  LL GQ  +G CW 
Sbjct: 76  GVYFTQNTQLLFWALLTLTCHTGNILLARRARRQEITSENARKWRRLLLSGQFLLGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV  +F P V+AL+ ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLAAFSPAVLALAAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL     T L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTVAFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495

Query: 483 --EDNHE-STQYKCYA 495
             E+ H  + + K +A
Sbjct: 496 AVEEAHAVARKRKSFA 511


>gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 517

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/480 (45%), Positives = 313/480 (65%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R R  + ++V   +    D LG     + DFD E++ L  ++    +  +P+F+++VA I
Sbjct: 17  RERALRRREVARTVRTVRDRLGTRDGLRPDFDDELLVLFAKARISAAYPVPMFIVIVAAI 76

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
              +T   +  +W+L T++++   ++  ++   +  +      WR    +G    GLCW 
Sbjct: 77  SFLWTDAALVVLWALFTISIHGLTVATCRRFERTPEEARTAARWRRQFTIGDALYGLCWA 136

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L L+       E L +++ AT+LI +++  + +  LP A+  S  P+ +A++   +   
Sbjct: 137 ALFLLPVSRNATEGLEVFQFATMLIVIAMCTMQSSTLPRALLASTLPITLAIALAFLQQQ 196

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +  ++A M   A  FF  +   L  S + +L+ +AEKD LIAELE A ++SDE+R+RA
Sbjct: 197 APIHYAMAAMAVGAQGFFLVLGNQLLNSAITMLAYRAEKDHLIAELEQANAVSDESRRRA 256

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLA+MSHELRTPLNAILGFSE+++ E +GP+ N TY+ Y  DIH SGQHLL
Sbjct: 257 EEANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPMANPTYRSYAADIHGSGQHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAGRYEL+E A++LIDIV +C  M+Q+RA+ K+I I +  +  L  +W
Sbjct: 317 NLINEILDLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIRAKAKDITIRESHEDGLPRLW 376

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQVILNLLSNAVKFT   G V + +G   G GQ++SI+DNGPGI E EIP VL 
Sbjct: 377 ADERAIRQVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQFVSIRDNGPGIPEDEIPIVLQ 436

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQG+IAIKSAE G GLGL I Q+++A HGG F ++S+LREG E I  LP+ RVL  +P
Sbjct: 437 AFGQGAIAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRLREGTEAIVTLPSNRVLQAMP 496


>gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
 gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
          Length = 511

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 264/484 (54%), Positives = 341/484 (70%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T   L     +   F+RE++ LH+ES+   +  LPL V+++A  
Sbjct: 16  RSRNHRNKAVSKTVRATRQRLQTGSSAPSGFEREMLLLHIESVLHGAMALPLLVIMIAAS 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + +      +W+L+ L+ +A  + L +K    D+   +V VWR   L  Q+  GLCW 
Sbjct: 76  GVYLSGEANILVWALMALSAHAVTIFLARKAKREDVVAEKVSVWRRRFLACQVLTGLCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           + TL +  +       +++   L IAL+I+A+  F+L  A++ +F PV+  L   A+ + 
Sbjct: 136 IFTLPDCASCGQVASGLFEGTVLFIALAITAMGTFLLRNALYYTFLPVLCVLCFSALATG 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +DI  AG+LA +L F  ++T  + ++NV ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DPVDIGFAGILALSLIFLAFMTGSMNRANVHILSVQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GPL+N TYKEY  DIHRSG+HLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYKEYTLDIHRSGEHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAG+YELSE A++L +IV +CI M+QLRA+ KNI I Q+ + ++ SVW
Sbjct: 316 NLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARSKNITIGQQFEQAMPSVW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV LNLLSNAVKFT  GG V V VGWT+G GQY+SI+DNGPGI E EIP VL+
Sbjct: 376 ADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDNGPGIPEEEIPIVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF++RSKLR G E IAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLRVGTEAIAILPPRRVLQSLP 495

Query: 483 EDNH 486
               
Sbjct: 496 PVED 499


>gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
 gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
          Length = 523

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/483 (40%), Positives = 277/483 (57%), Gaps = 5/483 (1%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
              +     +    D L     ++  FD E++  + ++    S ++ L V+    + + +
Sbjct: 18  RTRRVAAQRVREARDRLTSSSGTRPAFDHELLRQYAQTRTSASLVVILLVVTTGALSSLW 77

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
                  +W+   LA++A  +    K +           WR   +   +  GL WT++ +
Sbjct: 78  VSMVNAALWTCGILAIHAVVIRSCAKFLGQPPAPATTRKWRRRFVTLDLLYGLGWTVILI 137

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                       +     +L+ +++S++    LP A F S  PV  A++T  ++   + +
Sbjct: 138 HPTDVGVVSNTLMLF--IMLLVVAVSSMLAASLPIAAFASTVPVTAAIATNFVLRGTLDN 195

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA +   A  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 196 YILAALAVLAECYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAAN 255

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           ++KSRFLA MSHELRTPLNAILGFSEV++ E  GP     YK+Y  DIH SG HLLNLIN
Sbjct: 256 VSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGPHAVPVYKDYSADIHNSGVHLLNLIN 315

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E   SL+  V +C  +L+LRA  + I I +  +  +  +W DE+
Sbjct: 316 EILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRASNRGITIHEAFEEDMPKLWGDER 375

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             RQ++LNLLSNA+KFT  GG + +  GWT+  GQY+ +KD G GI + EIP VL SFGQ
Sbjct: 376 ATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLIVKDTGSGIPDDEIPIVLASFGQ 435

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPE 483
           GS +IKSAEQG GLGLPIA+S++  HGG F ++SKLR G EVI   P  RV+     +PE
Sbjct: 436 GSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIITFPPERVMAALAPLPE 495

Query: 484 DNH 486
           D  
Sbjct: 496 DTP 498


>gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 525

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/475 (40%), Positives = 275/475 (57%), Gaps = 2/475 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
              +     +    D L     ++  FD E++  + ++    S ++ L V+    + + +
Sbjct: 18  RTRRVAAQRVREARDRLTSSSGTRPAFDHELLRQYAQTRMSASLVVILLVVATGALSSLW 77

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
                  +W+   LA++A  + L  + MN          WR   +   +  GL WTL+  
Sbjct: 78  LPMLYAGIWTCGILAIHAVVIRLCSRFMNLPPAPATTRRWRHRFVALDLLYGLGWTLI-- 135

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   +             +L+ +++S++    LP A F S  PV  A++   ++   +  
Sbjct: 136 LVHPSGVDVVSNTLMLFLMLLVVAVSSMLAASLPIAAFASTIPVTAAIALNFVLRGTLDA 195

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA +   A  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 196 YILAALAVAAECYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAAN 255

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           ++KSRFLA MSHELRTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLIN
Sbjct: 256 VSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGSHAVAVYKDYSADIHNSGVHLLNLIN 315

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E   SL+ +V +C  +L+LRA  + I I +  +  +  +W DE+
Sbjct: 316 EILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRASSRGITIHEVFEDEMPKLWGDER 375

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             RQ++LNLLSNA+KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQ
Sbjct: 376 ATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLSVKDTGSGIPEDEIPIVLASFGQ 435

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GS +IKSAEQG GLGLPIA++++  HGG F ++SKLR G EVI   P  RV+  +
Sbjct: 436 GSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKSKLRIGTEVIITFPPERVMAAL 490


>gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 511

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 287/496 (57%), Positives = 362/496 (72%), Gaps = 3/496 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ ++V S+ + + I+PLF++L+  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYVASMLQGATIMPLFIVLITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + T+N     W+L+TL     N+ L ++    +I       WR  LL+GQ  +G CW 
Sbjct: 76  GVYITENTQLLFWALLTLTCQTGNILLARRARRQEITPESARKWRRLLLLGQFLLGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV ++F P ++AL+ ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAILALAAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL G+  + L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTGLFTSTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL N TYKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA+ KNI I  + +  L ++W
Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495

Query: 483 ---EDNHESTQYKCYA 495
              E    + + K +A
Sbjct: 496 AVEEAQAVARKRKSFA 511


>gi|92117022|ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799916|gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
          Length = 536

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/486 (41%), Positives = 287/486 (59%), Gaps = 2/486 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
              +     +    D L     ++  FD E++  + ++    S ++ L V+    +  ++
Sbjct: 24  RNRRAATQRVREARDRLTSTSGTRPAFDHELLRQYAQTRLSASLVVMLLVVATGVLFGFW 83

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
            +     +W+   L ++A  +      +           WR   ++  +  GLCWT + L
Sbjct: 84  MEPASAAVWTFGMLCIHAVTIYNCNNYLKEPSSPNSTRKWRARFILLDLLYGLCWTTI-L 142

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           V P  + P   T+     LL+ +++S++    LP A F +  PV  A++ + ++     +
Sbjct: 143 VHPAGFDPVTNTLMMFLMLLV-VAVSSMLAASLPIAAFAATAPVTSAIALKFVIGGSFNN 201

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA +   A  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 202 YILAVLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 261

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YK Y  DIH SG HLLNLIN
Sbjct: 262 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKSYSADIHNSGVHLLNLIN 321

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E A+SL+ +V +C  +L+LRA  + I I +  +  +  +W DE+
Sbjct: 322 EILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDER 381

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             RQ++LNLLSN++KFT  GG + + VGWT+  GQY+S+KD+G GIAE EIP VL SFGQ
Sbjct: 382 ATRQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVKDSGSGIAEDEIPIVLASFGQ 441

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G+ +IKSAEQG GLGLPIA+S++  HGG F +RSKLR G EVI   P  RV++ +     
Sbjct: 442 GTNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAPMAE 501

Query: 487 ESTQYK 492
           E+   +
Sbjct: 502 EAPPIQ 507


>gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 509

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 276/491 (56%), Positives = 363/491 (73%), Gaps = 3/491 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ + V   +  T + L  +      FDRE++ +HV++L + + ++P+FV++VA +
Sbjct: 16  RSRSHRNRAVSKAVRQTRERL--QSGHSRSFDRELMMMHVDTLLQGASVMPIFVIIVAAL 73

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + T++    +W++ TL ++A N+ LG++    ++ +G    WR  LL+GQ+ IG CW 
Sbjct: 74  GAYLTRDAQIFIWAIPTLTMHAVNMLLGRRAKKYEMTVGRARKWRQILLLGQLFIGFCWA 133

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
              + +      +   +YK A LL+A+ I+ ++NFMLP AV  +F P +VAL+ +A ++ 
Sbjct: 134 FFAMQDCSACGGDSFVLYKGAALLVAICITTMANFMLPRAVPFAFAPAIVALAVKATLTR 193

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             LDI+LA  +  A  FFT+IT  +F+SN+KILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 194 DPLDITLAAAVTVAAIFFTFITNRMFQSNLKILSFQSEKDDLIAELEVAKSMSDEARRRA 253

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPLNN TY+EY  DIHRSGQHLL
Sbjct: 254 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLNNATYREYTTDIHRSGQHLL 313

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAG+YEL+E AISL+D+  +CI M+QLRA+ KNI I  + +  L SVW
Sbjct: 314 NLINEILDLSRIEAGKYELNEEAISLLDVAEDCIGMVQLRARGKNISISPQFELQLPSVW 373

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK +RQVILNLLSNAVKFT  GG + V VGWTSG GQY++I+DNGPGI E EIP VL+
Sbjct: 374 ADEKSIRQVILNLLSNAVKFTPQGGEITVKVGWTSGGGQYVAIRDNGPGIPEEEIPVVLS 433

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG EVIAILP  RVL  +P
Sbjct: 434 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFMLKSKLREGTEVIAILPAKRVLQSLP 493

Query: 483 E-DNHESTQYK 492
             ++  S + +
Sbjct: 494 AVEDAPSVERR 504


>gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 536

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/484 (42%), Positives = 286/484 (59%), Gaps = 3/484 (0%)

Query: 4   SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63
           S +++       +    D L     ++  FD E++  + ++    S ++ L ++    + 
Sbjct: 22  SARHRRATTQR-VREARDRLTSTSGTRPAFDHELLRQYAQTRLSASFVVMLLLVATGVLF 80

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
            ++        W+   L ++   +   K  +           WR   ++  +  GLCWT 
Sbjct: 81  GFWMAPAAAAAWTFGMLCIHTVIIYNCKGYLKEPSSATSTRKWRARFILFDLLYGLCWTT 140

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           + LV P    P   T+     LL+ +++S++ +  LP A F +  PV  A++ +  M   
Sbjct: 141 I-LVHPAGSDPVTNTLMMFLMLLV-VAVSSMLSASLPIAAFAATAPVTSAIAFKFAMGGS 198

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
             +  LA +  TA  FF  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE
Sbjct: 199 FNNYILAILTLTAEGFFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAE 258

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N+AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YK Y  DIH SG HLLN
Sbjct: 259 SANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLN 318

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LINEILDLSRIEAGRYEL+E A+SL+ +V EC  +L+LRA  + I I +  +  +  +W 
Sbjct: 319 LINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEIFEQGMPRIWG 378

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+  RQ++LNLLSNA+KFT  GG + + VGWT+  GQY+S+KDNG GIAE EIP VL S
Sbjct: 379 DERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDNGSGIAEDEIPIVLAS 438

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           FGQGS +IKSAEQG GLGLPIA+S++  HGG F +RSKLR G EVI   P  RV++ +  
Sbjct: 439 FGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAP 498

Query: 484 DNHE 487
              E
Sbjct: 499 MAEE 502


>gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 530

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 194/469 (41%), Positives = 273/469 (58%), Gaps = 2/469 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++    ++    S ++ L V++   +  ++        W++  L
Sbjct: 38  DRLTSTSGTRPAFDHELVRQFAQTRLSASFVIMLLVVVTGILFAFWFDPVTAGAWTVGML 97

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            ++A  +    + +           WR   +   +  GL WT +  +             
Sbjct: 98  CIHAVMIRNCSRFLQEPASPPRTRSWRRRFVALDLLYGLAWTTI--LVHPLGLTVVSNTL 155

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++   ++        LA +   A  +F
Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATVPVTAAITLNFVLGGTFDSYVLAALTVAAEGYF 215

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YKEY  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E AISL+ +V +C  +L+LRA  + I I +  +  +  +W DE+ +RQV+LNLLSN++
Sbjct: 336 LNEEAISLVHVVTDCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSI 395

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + + VGWT+  GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL
Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGL 455

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +     E+ 
Sbjct: 456 GLPIAKSLVDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPMADEAP 504


>gi|85715389|ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697810|gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 536

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 200/481 (41%), Positives = 282/481 (58%), Gaps = 2/481 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
              +     +    D L     ++  FD E++  + ++    S ++ L ++    +  ++
Sbjct: 24  RHRRATAQRVREARDRLTSTSGTRPAFDYELLRQYAQTPLSASFVVMLLLVATGVLFGFW 83

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
            +      W+   L ++A  +   K  + +         WR   ++  +  GLCWT + L
Sbjct: 84  MEPAAAAAWTFGMLCIHAVIIYNCKNYLKAPSSANSTRKWRARFILLDLLYGLCWTTI-L 142

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           V P    P   T+     LL+ +++S++ +  LP A   +  PV  A++ +         
Sbjct: 143 VHPAGSDPVTNTLMMFLMLLV-VAVSSMLSASLPIAALAATAPVTSAIALKFATGGSFNS 201

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA +  TA  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 202 YILAILALTAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 261

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YK Y  DIH SG HLLNLIN
Sbjct: 262 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLNLIN 321

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E A+SL+ +V EC  +L+LRA  + I I +  +  +  +W DE+
Sbjct: 322 EILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEVFEQGMPRIWGDER 381

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             RQ++LNL+SNA+KFT  GG + + +GWT+  GQY+ +KDNG GIAE EIP VL SFGQ
Sbjct: 382 AARQIVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLGVKDNGSGIAEDEIPIVLASFGQ 441

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GS +IKSAEQG GLGLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +     
Sbjct: 442 GSNSIKSAEQGAGLGLPIAKSLIDLHGGTFTLKSKLRVGTEVIVTFPPERVMSALAPMAE 501

Query: 487 E 487
           E
Sbjct: 502 E 502


>gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 511

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 266/484 (54%), Positives = 345/484 (71%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           +SR ++ K V   +  T   L     +   F+RE++ LH+ES+   +  LPL V+L+A  
Sbjct: 16  KSRSHRNKAVSKTVRATRQRLQTGSSAPSGFEREMLLLHIESVLHGAMALPLLVILIAVS 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + + +P    W+L+ L+ +A  + L +K    D+   +V VWR   L GQ+  GLCW 
Sbjct: 76  GIYLSGDPHILAWALLALSAHAVTIFLARKAKREDVVTEKVSVWRRRFLAGQMLTGLCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           + TL +  +       +++   L IAL+++A+  F+L  A++ +F PV+ AL   ++ + 
Sbjct: 136 IFTLPDCASCGEIASGLFEGTVLFIALAVTAMGTFLLRNALYYTFLPVLAALGFSSLRTG 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +DI L G+LA +L F  ++T  + ++NV ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DAVDIGLTGILALSLVFLAFMTDRMNRANVHILSVQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GPL+N TYKEY  DIHRSG+HLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYKEYTLDIHRSGEHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAG+YELSE A++L +IV +CI M+QLRA+ KNI I  + + ++ SVW
Sbjct: 316 NLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARGKNITIGHQFEQAMPSVW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK MRQV LNLLSNAVKFT  GG V V VGWT+G GQY+SI+DNGPGI E EIP VL+
Sbjct: 376 ADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDNGPGIPEEEIPIVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A HGGQF++RSKLREG E IAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLREGTEAIAILPPRRVLQSLP 495

Query: 483 EDNH 486
               
Sbjct: 496 PVED 499


>gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 511

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 256/479 (53%), Positives = 340/479 (70%)

Query: 4   SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63
           S  ++ K     +  T + L   +     F+++++++H ++  + + I P   +L A + 
Sbjct: 17  SHSHRNKATAKALRVTRERLHSTHGGTPAFEKDLLSMHTQASLQGAAITPFVTILTAGLT 76

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
            + + +PI+ +W+L+TL+++A N+ L +K             WR  LL G +A+G CW  
Sbjct: 77  AYLSGSPIYILWALLTLSIHALNILLIRKAAKRIPVTHRQEHWRHVLLAGHLAMGCCWAA 136

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
            T        P    + K + LL+ L  +A++N +L  AV  +F P ++ALS QA  S  
Sbjct: 137 FTFQTCDACGPTSDLLLKGSVLLVVLCTTAMTNILLRQAVLYAFTPPIIALSAQAFFSQR 196

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           V D +LA     ++ FF YIT  L+ SN+K++S Q+EKDDLIAELEVAKS+SDE R+RAE
Sbjct: 197 VDDATLALAFTVSVLFFIYITGRLYVSNLKLISFQSEKDDLIAELEVAKSMSDEARRRAE 256

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N+AKSRFLASMSHELRTPLNAILGFSEV+  E +GPLNN  Y+EY GDIHRSGQHLLN
Sbjct: 257 EANMAKSRFLASMSHELRTPLNAILGFSEVMAQEVLGPLNNPLYREYSGDIHRSGQHLLN 316

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LINEILDLSRIEAG+Y+LSE +ISL+++  +C+ M+QLRA+ K+I+I Q+ + +L ++WA
Sbjct: 317 LINEILDLSRIEAGKYDLSEESISLLEVAEDCVGMVQLRAKAKDIKISQQYEINLPALWA 376

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQV+LNLLSNAVKFT  GG + V VGWT G GQY+SIKDNGPGIAE EIP VL++
Sbjct: 377 DEKALRQVVLNLLSNAVKFTPPGGEILVKVGWTVGGGQYVSIKDNGPGIAEEEIPVVLSA 436

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           FGQGSIAIKSAEQG GLGLPI Q+I+A HGG+F ++SKLREG EVIAILP  RVL  IP
Sbjct: 437 FGQGSIAIKSAEQGTGLGLPIVQAILAKHGGEFKLKSKLREGTEVIAILPAKRVLQTIP 495


>gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 530

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/469 (41%), Positives = 272/469 (57%), Gaps = 2/469 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + ++    S ++ L V++   +   +        W++  L
Sbjct: 38  DRLTSTSGTRPAFDHELVRQYAQTRLSASFVIMLLVVVTGALFGVWLDPITAGAWTVGML 97

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            V+A  +    + +           WR   +   +  GL WT +  +             
Sbjct: 98  CVHAVVIRNCNRFLQEPASPPRTRGWRRRFVALDLLYGLAWTTI--LVHPLGLTVVSNTL 155

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++   I+        LA +   A  +F
Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALATTVPVTCAIALNFILGGTFDSYVLAALTVAAEGYF 215

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E AISL+ +V +C  +L+LRA  + I I +  +  +  +W DE+ +RQV+LNLLSNA+
Sbjct: 336 LNEEAISLVHVVSDCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + + VGWT+  GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL
Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLPIA+S++  HGG F ++SKLR   EVI   P  RV++ +     E+ 
Sbjct: 456 GLPIAKSLVDMHGGTFTLKSKLRISTEVIVTFPPERVMSALAPMADEAP 504


>gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 546

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/483 (40%), Positives = 285/483 (59%), Gaps = 3/483 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
           +  +     +    D L     ++  FD E++  + ++    S ++ L V+    +   +
Sbjct: 39  SSRRAAAQRVREARDKLTSTSGTRPAFDAEMLRQYAQTRLSASYVVMLLVVATGVLFGLW 98

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
            Q      W+   L ++ A +   ++ +           WR   +V  +  GLCW  + +
Sbjct: 99  MQPIPAAAWTAGMLCIHGAMIRSCRRFLTEPASPAATRAWRTRFVVLDLLYGLCWMAILI 158

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                   E L ++    +L+ +++S++    LP A   +  PV VA++    ++  + +
Sbjct: 159 HPVLDMVTETLMMF---LMLLVIAVSSMLAANLPIAALAATAPVAVAMALSFAVTGSLDN 215

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA +   A  +F  + + L  S    L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 216 YILAALALAAEGYFVLLAHRLHSSTFATLEARAEKDALIGELEQAKAISDEARHRAESAN 275

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YKEY  DIH SG HLLNLIN
Sbjct: 276 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 335

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E A+SL+ IV +C  +++LRA  + I I +  + ++  +WADE+
Sbjct: 336 EILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRASSRGITIHEVFEQAMPRLWADER 395

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQV+LNLLSN++KFT  GG + +  GWT+  GQY+S++D G GI E EIP VL SFGQ
Sbjct: 396 AIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLSVRDTGSGIPEDEIPVVLASFGQ 455

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GS +IKSAEQG GLGLPIA++++  HGG F ++SKLR G EVI   P  RV++ +   + 
Sbjct: 456 GSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLSD 515

Query: 487 EST 489
           +S 
Sbjct: 516 DSP 518


>gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 498

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 423/498 (84%), Positives = 458/498 (91%), Gaps = 3/498 (0%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           M  S K ++K    LIS  GD++ ++ P K  FDREII LHVESLFRVSPILPLF+LLVA
Sbjct: 1   MRISNKFQQKTTCRLISSIGDNMSIDRPPKTGFDREIINLHVESLFRVSPILPLFILLVA 60

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
           NIGTWFTQNP+ P+WSLITLAVYAANLSLG+KV+NSDIK   VY+WR+WLL+GQIAIGLC
Sbjct: 61  NIGTWFTQNPMLPIWSLITLAVYAANLSLGQKVINSDIKTERVYIWRVWLLIGQIAIGLC 120

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV+VALSTQAI+
Sbjct: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVLVALSTQAII 180

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           SMHVLD+SLAGMLATALSFFTYITYHLFKSNVKILS Q+EKDDLIAELEVAKSLSD+TR+
Sbjct: 181 SMHVLDVSLAGMLATALSFFTYITYHLFKSNVKILSFQSEKDDLIAELEVAKSLSDKTRQ 240

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE NLAKSRFLASMSHELRTPLNAILGFSEVI LETMGPLNNETYKEYIGDIHRSGQH
Sbjct: 241 RAEEANLAKSRFLASMSHELRTPLNAILGFSEVIGLETMGPLNNETYKEYIGDIHRSGQH 300

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LLNLINEILDLSRIEAGRYELSESAISLIDI+ EC+IMLQLRAQEK IEIFQ+IDP+LSS
Sbjct: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIMHECMIMLQLRAQEKYIEIFQQIDPTLSS 360

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VWADEKGMRQVILNLLSNAVKFT+IGG+V V VGWT+G GQYISIKDNGPGI+EGE+PTV
Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYISIKDNGPGISEGEMPTV 420

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           L+SFGQGSIAIKSAEQGVGLGLPI QSIMANHGGQF I+SKL+EGVEVIAILP+TRVLN 
Sbjct: 421 LSSFGQGSIAIKSAEQGVGLGLPIVQSIMANHGGQFRIKSKLQEGVEVIAILPSTRVLNN 480

Query: 481 IPEDNHES---TQYKCYA 495
           + ED       +QYK YA
Sbjct: 481 VSEDASNKQNPSQYKRYA 498


>gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris CGA009]
 gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
          Length = 532

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/469 (41%), Positives = 278/469 (59%), Gaps = 2/469 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + E+    S ++ L V++   +   +        W++  L
Sbjct: 39  DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVAML 98

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           +++A  +    + +     +     WR   ++  +  GL WT   ++   T      +  
Sbjct: 99  SIHAVVIRNCNRFLKEPASVPRTRTWRRRFVLLDLLYGLAWT--AILIHPTELNVVSSTL 156

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++    +S       LA +   A  +F
Sbjct: 157 LMFLMLLVVAVSSMLAASLPIAALAATMPVTAAIAVNFALSGSFDKYVLAALTVAAEGYF 216

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LIAELE +K++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 217 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 276

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 277 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 336

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E AISL+ +V +C  +L+LRA  + I I +  +  +  +W DE+ +RQV+LNLLSNA+
Sbjct: 337 LNEEAISLVHVVTDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 396

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL
Sbjct: 397 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 456

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +     E+ 
Sbjct: 457 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLADEAP 505


>gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 531

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/469 (41%), Positives = 278/469 (59%), Gaps = 2/469 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + E+    S ++ L V++   +   +        W++  L
Sbjct: 38  DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVAML 97

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           +++A  +    + +     +     WR   ++  +  GL WT   ++   T      +  
Sbjct: 98  SIHAVVIRNCNRFLKEPASVPRTRTWRRRFVLLDLLYGLAWT--AILIHPTELNVVSSTL 155

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++    +S       LA +   A  +F
Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATMPVTAAIAVNFALSGSFDKYVLAALTVAAEGYF 215

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LIAELE +K++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 216 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 275

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E AISL+ +V +C  +L+LRA  + I I +  +  +  +W DE+ +RQV+LNLLSNA+
Sbjct: 336 LNEEAISLVHVVTDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL
Sbjct: 396 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +     E+ 
Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLADEAP 504


>gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 511

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 272/486 (55%), Positives = 346/486 (71%), Gaps = 2/486 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSRK++ K V   +  T + L         ++RE++T+H+    + + I+PLF++L + I
Sbjct: 16  RSRKHRNKAVFDTVKTTRERLQQGAGGSEAYEREMLTMHIAEALQGAMIMPLFIVLASII 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + T +    +WSLI L+ +A +L L K+     I    +  WR   L  QI IG  W 
Sbjct: 76  GLYITGDIGLIIWSLIALSFHAMSLVLAKRAAKQGITAENLPKWRNLFLAMQILIGCAWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L EP    P  +  +K ATLLIALS++A++NFML  A F++F PV+ AL   +++S 
Sbjct: 136 MFALAEPVRNNPALVLFFKGATLLIALSLTAMANFMLRRATFMTFLPVLAALCVTSVVSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
              D+ LA M   A+ F   IT  L+++++K+LS Q EKDDLIAELEVA S+SDE R+RA
Sbjct: 196 DPFDVGLALMFGMAILFCHRITSRLYQTSIKLLSSQTEKDDLIAELEVANSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GPLNN  YKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNNPLYKEYSGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAGRY+L+E A+S+++I  +CI M+QLRA+ K I I Q+ + SL  VW
Sbjct: 316 DLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRARAKTIRISQQFESSLPQVW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK +RQVILNLLSNAVKFT  GG + V  GWT+G GQY+SIKDNGPGI E EIP VL+
Sbjct: 376 ADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVSIKDNGPGIPEEEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG E IAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAILPAKRVLQSLP 495

Query: 483 --EDNH 486
             E+ H
Sbjct: 496 AVEETH 501


>gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 511

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 269/486 (55%), Positives = 346/486 (71%), Gaps = 2/486 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RS+K++ K V   +  T + L         ++RE++T+H+    + + I+PLF++L + I
Sbjct: 16  RSKKHRNKAVFDTVKTTRERLQQGAGGNEAYEREMLTMHIAEALQGAMIMPLFIVLASII 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G + T +    +WSLI L+ +A +L L K+     I    +  W+   L  QI IG  W 
Sbjct: 76  GLYITGDISLIIWSLIALSFHAMSLVLAKRAAKQAITDDNLQHWKNLFLGMQILIGCAWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L EP    P  +  +K +TLLIALS++A++NFML  A F++F PV+ AL   + +S 
Sbjct: 136 MFALAEPVRNDPTLVLFFKGSTLLIALSLTAMANFMLRRATFMTFLPVLAALCITSAISR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
              D+ LA M   A+ F   IT  L+++++K+LS Q EKDDLIAELEVA S+SDE R+RA
Sbjct: 196 DPFDVGLALMFGMAILFCHRITSRLYQTSIKLLSSQTEKDDLIAELEVANSVSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GPLNN  YKEY GDIHRSGQHLL
Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNNPLYKEYSGDIHRSGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAGRY+L+E +IS+++I  +CI M+QLRA+ KNI I Q+ + SL  VW
Sbjct: 316 DLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRARAKNIRISQQFEASLPQVW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK +RQVILNLLSNAVKFT  GG + V  GWT+G GQY+SI+DNGPGI E EIP VL+
Sbjct: 376 ADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVSIRDNGPGIPEDEIPVVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG E IAILP  RVL  +P
Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAILPAKRVLQSLP 495

Query: 483 --EDNH 486
             E+ H
Sbjct: 496 AVEETH 501


>gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 512

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 204/471 (43%), Positives = 277/471 (58%), Gaps = 1/471 (0%)

Query: 15  LISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74
            +    + L      +  FD E++ +  +        L LF L VA     +       +
Sbjct: 29  DVRSARERLTSSIGLERAFDYELLRIFAQYRIGAFLPLTLFALCVAAASAVWLPLVWSAV 88

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W    L   AA     +  +        +   R   ++G++     W LL L+       
Sbjct: 89  WLCGVLGSIAAVAVFARSFLRQAPDSVALRGSRRRAVIGEVTQSTAWALLALLPFSVEAA 148

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
              T      L+I  + + +    +P A      P+ +A     +++     + L  M  
Sbjct: 149 NAQTFVLF-VLVIVAAGTTMLAATVPLAAGAGLVPLSLATLGLLLVTRGFESVMLVAMAV 207

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A  FF  ++ HLF+S V  L  +AEKD +  ELE AK+ SDE R+RAEE NLAKSRFLA
Sbjct: 208 GAQLFFLVLSNHLFRSTVAALQSRAEKDAIFGELEQAKANSDEARRRAEEANLAKSRFLA 267

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAILGFSEV++ E  GP  + +Y+EY  DIH SG HLLNLINEILDLSRI
Sbjct: 268 TMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQEYSTDIHESGLHLLNLINEILDLSRI 327

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGRYEL+E A+ L  +V EC  M+ LRA+ KN    + +DPSL  +WADE+ +RQ++LN
Sbjct: 328 EAGRYELNEEAVQLAYVVEECRHMMGLRARAKNQNFRELVDPSLPRLWADERAVRQIVLN 387

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           +LSNA+KFT  GG + + VGWTS  GQY+SIKD GPGI E EIPTV++SFG+GS+AIK+A
Sbjct: 388 ILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDTGPGIPEDEIPTVMSSFGRGSLAIKTA 447

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           EQG GLGLPI + ++  HGG F ++SK REG EVI   P +RV++ +P  +
Sbjct: 448 EQGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPASRVMDALPAVD 498


>gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 530

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/461 (42%), Positives = 277/461 (60%), Gaps = 2/461 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + E+    S ++ L V++   +   +        W++  L
Sbjct: 38  DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVGML 97

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           +++A  +    + +     +    +WR   ++  +  GL WT   ++   T      +  
Sbjct: 98  SIHAVVIRNCSRFLQEPASLPRTRIWRRRFVLLDLLYGLAWT--AILIHPTGLSVVSSTL 155

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++    +S       LA +   A  +F
Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATVPVTAAIAVNFALSGSFDKYILAALTVAAEGYF 215

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LIAELE +K++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 216 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 275

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E AISL+ +V +C  +L+LRA  + I I +  +  +  +W DE+ +RQV+LNLLSNA+
Sbjct: 336 LNEEAISLVHVVSDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL
Sbjct: 396 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +
Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSAL 496


>gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 513

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/475 (43%), Positives = 285/475 (60%), Gaps = 1/475 (0%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           + + +   +    + L      +  FD E++ +  +        L L  + VA    ++ 
Sbjct: 22  RRRKLARDVRSARERLTSSIGLERAFDYELLRVFAQYRIGAFLPLMLLAISVAAASAFWL 81

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
                 +W    L    A  +L ++ +  +     +   R   ++G++     W+LL L+
Sbjct: 82  PVTWSALWLSGVLVCIGAVAALARRFLRQEPDSISLRPARRRAVIGEVLQSTAWSLLVLL 141

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                     T      L+I  +++ +    +P A      P+ +A  + A M+  +  +
Sbjct: 142 AFSVEGSNARTFVLF-VLVIVAAVTTMLAATVPLAAAAGLLPLSLATLSLAWMTRGLESV 200

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L GM   A  FF  ++ HL+ S V  L  +AEKD +  ELE AK+ SDE R+RAEE NL
Sbjct: 201 LLIGMAVGAQLFFLVLSNHLYGSTVAALRSRAEKDAIFGELEQAKANSDEARRRAEEANL 260

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKSRFLA+MSHELRTPLNAILGFSEV++ E  GP  + +Y+EY  DIH SG HLLNLINE
Sbjct: 261 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQEYSTDIHDSGMHLLNLINE 320

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSRIEAGRYEL+E A+ L  +V EC  M+ LRA+ KN    + +DPSL  +WADE+ 
Sbjct: 321 ILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAKNQVFRELVDPSLPRLWADERA 380

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQV+LN+LSNA+KFT  GG + + VGWTS  GQY+SIKD GPGI E EIPTV++SFG+G
Sbjct: 381 VRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDTGPGIPEDEIPTVMSSFGRG 440

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           S+AIK+AEQG GLGLPI + ++  HGG F ++SK REG EVI   P  RV++ +P
Sbjct: 441 SLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGTEVIVTFPAARVMDALP 495


>gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 545

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/461 (42%), Positives = 278/461 (60%), Gaps = 2/461 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + ++    S ++ L V     +   + Q     +W+   L
Sbjct: 49  DRLTSSSGTRPAFDHELLRQYAQTRQSASLVVMLLVAATGLLFGIWMQPLAAAVWTCGML 108

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            ++A  +    + +      G+   WR   ++  +  GLCWT + L  PG          
Sbjct: 109 CIHAVIIRNCGRFLGEAQSPGQTRKWRNRFVLLDLLYGLCWTTILLHPPGAS--MVSNTL 166

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++ +  LP A   +  PV  +L+   I++    +  L  +   A  +F
Sbjct: 167 LMFLMLLVVAVSSMLSASLPVAALAATAPVTFSLAVNFILTGTFDNYILGLLTLAAEGYF 226

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   L  + +  L  +AEKD LI ELE AK++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 227 ALLARRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 286

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 287 RTPLNAILGFSEVMKSEIFGAHAVAVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 346

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E A+SL+ +V +C  +L+LRA  + I I +  +  +  +WADE+  RQ++LNLLSN++
Sbjct: 347 LNEEAVSLVHVVADCHHLLKLRASNRGITIHEVFEQGMPRIWADERAARQIVLNLLSNSI 406

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + + VGWT+  GQY+S+KD G GIAE EIP VL SFGQGS +IKSAEQG GL
Sbjct: 407 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGL 466

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +
Sbjct: 467 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSAL 507


>gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 533

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/469 (41%), Positives = 276/469 (58%), Gaps = 2/469 (0%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L     ++  FD E++  + +     S ++ L V+    +   + Q      W+   L
Sbjct: 38  DRLTSTSGTRPAFDHELLRQYAQMRQSASIVVILLVVATGLLFAIWIQPLSAAAWTCGML 97

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            ++A  +    + +           WR   ++  +  G+CWT + +  P           
Sbjct: 98  CIHAVMIRNCGRFLGEQQSPLRTRKWRTRFVLLDLLYGVCWTAILVHPP--GVEVVSNTL 155

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ +++S++    LP A   +  PV  A++   ++S    +  LA +   A  +F
Sbjct: 156 LMFLMLLVVAVSSMLAANLPIAALAATAPVTAAIAANFLLSGTFDNYILALLTVAAEGYF 215

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N+AKSRFLA MSHEL
Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G      YK+Y  DIH SG HLLNLINEILDLSRIEAGRYE
Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVAVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+E A+SL+ +V +C  +L+LRA  + I I +  +  +  +W DE+  RQ++LNLLSNA+
Sbjct: 336 LNEEAVSLVHVVADCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAARQIVLNLLSNAI 395

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + + VGWT+  GQY+S+KD G GIAE EIP VL SFGQGS +IKSAEQG GL
Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGL 455

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLPIA+S++  HGG F ++SKLR G EVI   P  RV++ +     E+ 
Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPMADEAP 504


>gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
 gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
          Length = 506

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 225/480 (46%), Positives = 314/480 (65%), Gaps = 1/480 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R + ++  DV   +  T D L  +     DFDRE++ LH  ++   + ++PL VL +A  
Sbjct: 16  RRKPHRNSDVARAVRKTRDRLSQQAG-NPDFDRELLKLHAGAMTSGAVVIPLLVLAIAAA 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G          +W+L TL  Y     + +++  ++         R   LVG    GL W 
Sbjct: 75  GWLAGVGNEIGLWALFTLTCYTIVAFMARRIERTEASELNPLQTRREFLVGHFLCGLGWG 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
              ++  G    +   + K+  LL+A++ +AL    L  A+  +F   V   +       
Sbjct: 135 WFVVLGCGACAVDQFPVVKAVVLLLAMAGTALMASSLSGALLATFAVPVALYAYVGTRLW 194

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             ++  +AG+L  +L FF Y+   L ++++ +LS ++EKD LIAELE AKS+SDE R+RA
Sbjct: 195 MPVEAMMAGLLVLSLPFFVYVARQLNRASLMLLSFRSEKDALIAELETAKSMSDEARRRA 254

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GP++N TY++Y  D+H SGQHLL
Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAHDVHDSGQHLL 314

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAGRY+L+E  + L++IV +C  M++L+A+ K+I + Q  + +L  ++
Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVVQDFEQTLPRLF 374

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYIS+KDNGPGI E EIP VL+
Sbjct: 375 ADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISVKDNGPGIPEDEIPVVLS 434

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+  +P
Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494


>gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 197/483 (40%), Positives = 285/483 (59%), Gaps = 3/483 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
           ++ +     +    D L     ++  FDRE++  + ++    S I+ L V+    + + +
Sbjct: 24  SQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGMMLSVW 83

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
                   W+L  L ++AA +      +     +     WR   ++  +  G+CW  + +
Sbjct: 84  LHAVAAGAWTLGVLCIHAAIVRNCSNFLADQPSLAATRRWRTRFVLLDLLYGVCWMAILI 143

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                     L ++    +L+ +++S++    LP A      PV VA++    +S    +
Sbjct: 144 HPALAEVSGTLMMF---LMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LAG    A  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 201 YLLAGFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YKEY  DIH SG HLLNLIN
Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E A++L+ ++ +C  +L+LRA  + I I +  +  +  +WADE+
Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRASSRGITIHEVFEQKMPRLWADER 380

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQV+LNLLSNA+KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQ
Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GS +IKSAEQG GLGLPIA++++  HGG F ++SK+R G EVI   P  RV++ +   + 
Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500

Query: 487 EST 489
           E+ 
Sbjct: 501 EAP 503


>gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. BTAi1]
 gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. BTAi1]
          Length = 532

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/483 (40%), Positives = 284/483 (58%), Gaps = 3/483 (0%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66
           ++ +     +    D L     ++  FDRE++  + ++    S I+ L V+    + + +
Sbjct: 24  SQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGLMLSVW 83

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
                   W+   L ++AA +      +     +     WR   ++  +  G+CW  + +
Sbjct: 84  LHALAAGAWTCGVLCIHAAIVRNCSNFLADQPSMAATRRWRTRFVLLDLLYGVCWMAILI 143

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                     L ++    +L+ +++S++    LP A      PV VA++    +S    +
Sbjct: 144 HPALAEVSGTLMMF---LMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA     A  +F  + + L  + +  L  +AEKD LI ELE AK++SDE R RAE  N
Sbjct: 201 YLLAAFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKSRFLA MSHELRTPLNAILGFSEV++ E  G      YKEY  DIH SG HLLNLIN
Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSRIEAGRYEL+E A++L+ +V +C  +L+LRA  + + I +  + ++  +WADE+
Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGLTIHEVFEQNMPRLWADER 380

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQV+LNLLSNA+KFT  GG + +  GWT+  GQY+S+KD G GI E EIP VL SFGQ
Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GS +IKSAEQG GLGLPIA++++  HGG F ++SK+R G EVI   P  RV++ +   + 
Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500

Query: 487 EST 489
           E+ 
Sbjct: 501 EAP 503


>gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 506

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 229/480 (47%), Positives = 315/480 (65%), Gaps = 1/480 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R + ++  DV   +  T D L  +    +DFDRE++ LH  ++   + ++PL VL +A  
Sbjct: 16  RRKPHRNSDVARAVRKTRDRLSQQAG-NLDFDRELLKLHARAMTSGAVVIPLLVLAIAAA 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G          +W+L TL  Y   + + +++  ++         R   LVG    GL W 
Sbjct: 75  GRLAGVGNEIGLWALFTLTCYTIVVFMARRIERTEASELNPLQARREFLVGHFLCGLGWA 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
               +  G    + L + K+  LL A++ +A+    L  A+  +F   V   +       
Sbjct: 135 WFVWLGCGACAVDQLHVVKAVVLLFAMAGTAIMASSLRGALLATFAVPVALYAYAGAKLW 194

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             L+  +AG+L  +L FF Y+  HL  S++ +LS ++EKD LIAELE AKS+SDE R+RA
Sbjct: 195 MPLEAIMAGLLVLSLPFFAYVARHLNDSSLMMLSFRSEKDALIAELETAKSMSDEARRRA 254

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GP++N TY++Y  D+H SGQHLL
Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAHDVHDSGQHLL 314

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAGRY+L+E  + L++IV +C  M++L+A+ K+I + Q  + +L  ++
Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVIQDFEQTLPRLF 374

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 375 ADERALRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISIKDNGPGIPEDEIPVVLS 434

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+  +P
Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494


>gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 511

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 206/480 (42%), Positives = 287/480 (59%), Gaps = 5/480 (1%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           +   V   I    + L  +   +  FD E++  + +        L  F   +A   T++ 
Sbjct: 22  RRLGVAREIRSAREKLTSQTGLERAFDYELLRHYAQYRVGAGIPLAGFAAALAAAATFWI 81

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
             P+   W+L    +   N +L ++ + +D     +  WR   LVG++   L W  +  +
Sbjct: 82  APPVAAAWALGVFLMITLNTTLSRRFLRADPATIPLARWRRRFLVGEVLQSLSWAAMIGL 141

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                    L       L+IA +++ +    +P A   +  P+ +A ++ A  S  +  +
Sbjct: 142 GTTGGWTFALF-----GLVIASAVTTMLAATVPLAAVAALVPLALATASLAAFSRGMDLL 196

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L  M   A  FF  ++  L+ S V  L  +AEKD +  ELE AK+ SDE R+RAEE NL
Sbjct: 197 MLVVMAGGAQVFFLGLSRRLYTSTVGALRSRAEKDAVFGELEQAKANSDEARRRAEEANL 256

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKSRFLA+MSHELRTPLNAILGFSEV++ E  G     +Y+EY  DIH SG HLLNLINE
Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAPSYREYSHDIHDSGMHLLNLINE 316

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSRIEAGRYEL+E  + L  +V EC  M+ LRA+ KN      +D SL  +WADE+ 
Sbjct: 317 ILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKAKNQTFHDLVDGSLPRLWADERA 376

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ++LNLLSNAVKFT  GG + + VGWT+  GQY+S+KD+GPGI E E+ TVL+SFG+G
Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYVSVKDSGPGIPEDELGTVLSSFGRG 436

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S+AIK+AEQG GLGLPI + ++  HGGQF + SK REG EV+  LP +RV++ +P  + E
Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREGTEVVVTLPASRVMDTLPPVDVE 496


>gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 468

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 282/467 (60%), Positives = 353/467 (75%), Gaps = 3/467 (0%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
            FDR+++ ++V S+ + + I+PLFV+++  +G +FTQN     W+L+TL  +A N+ L +
Sbjct: 2   SFDRDVLKMYVTSMLQGATIMPLFVVIITALGVYFTQNTQLLFWALLTLTCHAGNILLAR 61

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +    +I       WR  LL+GQ  +G CW +  L    +  P    +YK ATLLIALS+
Sbjct: 62  RARRQEITSENARKWRRLLLLGQFLLGCCWAIFALQGCDSCEPSSFILYKGATLLIALSV 121

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           +A+SNFML  AV ++F P ++AL+ ++ +S  +L+ISL G   T + FF YI+  LFKSN
Sbjct: 122 TAMSNFMLTPAVLVAFAPAILALAAKSGLSRDLLEISLTGAFTTTVVFFNYISDRLFKSN 181

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +KILS Q+EKDDLIAELEVAKS+SDE R+RAEE NLAKSRFLASMSHELRTPLNAILGFS
Sbjct: 182 LKILSYQSEKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFS 241

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+  E MGPL N TYKEY GDIHRSGQHLL+LINEILDLSRIEAG+YELSE AISL+DI
Sbjct: 242 EVMSAEVMGPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDI 301

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +CI M+QLRA+ KNI I  + +  L ++WADEK MRQV+LNLLSNAVKFT  GG +HV
Sbjct: 302 TEDCIGMVQLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHV 361

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            VGWT+G GQYISIKDNGPGI E EIP VL++FGQGSIAIKSAEQG GLGLPI Q+I+A 
Sbjct: 362 KVGWTAGGGQYISIKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAK 421

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHE-STQYKCYA 495
           H GQFL++SKLREG EVIAILP  RVL  +P  E+ H  + + + +A
Sbjct: 422 HDGQFLLKSKLREGTEVIAILPAKRVLQSLPAVEEAHAVARKRRSFA 468


>gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
 gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
          Length = 510

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 253/492 (51%), Positives = 338/492 (68%), Gaps = 2/492 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR +K   +   +  T + L         FDRE++ LH+ ++ + +   P+ V+L A  
Sbjct: 15  RSRAHKNAALVKTVRTTRERLQHGREIPPGFDREMVLLHINTVLQGAAAAPVLVMLTAVA 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G WF Q      W+L  +  YA  +   ++   +         W++  L+    IGLCW 
Sbjct: 75  GLWFDQAVWLLPWALCIMTAYALLVLFARRTSRAQSDDNAATRWQVRFLLIYALIGLCWA 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           + +  +  +   +  T YK+A LLIAL+ +A++ F L +A++L   PVV+AL+ +  +S 
Sbjct: 135 VFSYQDCTSCQGDTFTFYKAAVLLIALAATAMATFALRFAIYLVVCPVVIALALRTGISR 194

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            + D S   M+  +   F +++  L  +N+K+L  Q EKDDLIAELEVAKS+SDE R+RA
Sbjct: 195 DLNDFSTLAMICASSLLFIFMSQRLRNTNLKMLGFQTEKDDLIAELEVAKSVSDEARRRA 254

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GP+ NE+YKEY+GDIHRSGQHLL
Sbjct: 255 EESNLAKSRFLASMSHELRTPLNAILGFSEVMSGEVLGPVGNESYKEYVGDIHRSGQHLL 314

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           NLINEILDLSRIEAGRY+L+ESA++L DI ++CI ++QL+A+ K+I I +  +  L  VW
Sbjct: 315 NLINEILDLSRIEAGRYDLNESALALSDIAQDCIGLIQLKARSKSITINEAFEEDLPMVW 374

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADEK +RQV+LNLLSNAVKFT  GG + V +GWT+G GQYI+IKDNGPGIAE EIP VL+
Sbjct: 375 ADEKSIRQVVLNLLSNAVKFTPSGGEIRVKLGWTAGGGQYIAIKDNGPGIAEEEIPVVLS 434

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGS+AIKSAEQG GLGLPI Q+I+A HGG+F+++SKLREG E IAILP  RVL  + 
Sbjct: 435 AFGQGSVAIKSAEQGTGLGLPIVQAILAKHGGEFVLKSKLREGTEGIAILPRKRVLESMA 494

Query: 483 EDN--HESTQYK 492
                  +TQ K
Sbjct: 495 PVEGLPRATQKK 506


>gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli IE4771]
          Length = 570

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 273/437 (62%), Positives = 332/437 (75%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           S+ + + I+PLF++++  +G +FTQ+     W+L+TL  +A N+ L ++    +I     
Sbjct: 2   SMLQGATIMPLFIVIITALGVYFTQDTRLLFWALLTLTCHAGNILLARRARRQEITAESA 61

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             WR  LL GQ  +G CW +  L    T  P    +YK ATLLIALS++A+SNFML  AV
Sbjct: 62  RKWRRLLLSGQFLVGCCWAVFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAV 121

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            ++F P V+AL  ++ +S  +L+ISL G+    L FF YI+  LFKSN++ILS Q+EKDD
Sbjct: 122 LVAFAPAVLALGAKSGLSRDLLEISLTGLFTATLVFFNYISDRLFKSNLRILSYQSEKDD 181

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LIAELEVAKS+SDE R+RAEE NLAKSRFLASMSHELRTPLNAILGFSEV+  E MGPL 
Sbjct: 182 LIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLA 241

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N TYKEY GDIHRSGQHLL+LINEILDLSRIEAG+YELSE AISL+DI  +CI M+QLRA
Sbjct: 242 NPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRA 301

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + KNI I  + +  L ++WADEK MRQV+LNLLSNAVKFT  GG +HV VGWT+G GQYI
Sbjct: 302 RAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI 361

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SIKDNGPGI E EIP VL++FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLR
Sbjct: 362 SIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLR 421

Query: 464 EGVEVIAILPNTRVLNF 480
           EG EVIAILP  RVL  
Sbjct: 422 EGTEVIAILPAKRVLQS 438


>gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 225/480 (46%), Positives = 307/480 (63%), Gaps = 1/480 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R ++++  DV   +  T D L  +     DFDRE++ LH  ++   +  +PL VL +A  
Sbjct: 16  RRKRHRNSDVARAVRKTRDRLSQQAG-NPDFDRELLKLHARAMTSGAIAIPLLVLAIAAG 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G          +W+L TL  Y     + +++  ++         R   L+G    GL W 
Sbjct: 75  GRLAGIGNEIGLWALFTLTCYTIVAFMARRIERTEASELNPLQARREFLIGHFLCGLGWA 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
               +       +   I K+  LL A++ +A+    L  A+  +F   V   +       
Sbjct: 135 WFVWLGCSVCEVDPFHIVKAVVLLFAMAATAVMTSSLRGALLATFAVPVALYAYAGAKLW 194

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             ++  +A +L  +L F  Y+  HL  S++ +LS ++EKD LIAELE AKS+SDE R+RA
Sbjct: 195 MPVEAIMAALLVVSLPFLAYVARHLNHSSLMMLSFRSEKDALIAELETAKSMSDEARRRA 254

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GP++N TY++Y  D+H SGQHLL
Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMSNEVLGPMSNPTYRDYAHDVHESGQHLL 314

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LINEILDLSRIEAGRY+L+E  + L+ IV +C  M++LRA+ K+I + Q  +  L  ++
Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLGIVEDCCHMMELRARNKDIRVVQDFEHELPRLF 374

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYISIKDNGPGI E EIP VL+
Sbjct: 375 ADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISIKDNGPGIPEDEIPIVLS 434

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+  +P
Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494


>gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 513

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/475 (42%), Positives = 274/475 (57%), Gaps = 5/475 (1%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           K + +   +    + L      +  FD E++ L+ +        L L  L VA   + + 
Sbjct: 22  KRRGIAREMRSARERLTSTSGLERAFDYELLRLYAQYRVGAGIPLLLLALGVAGASSIWV 81

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
                 +W+   L   A  L L ++ +    +   +  W    +  +    L W +L LV
Sbjct: 82  APVTVAVWAAGALLATALMLVLSRRFLRQAPESLPLKRWGRLFVAAEFGQSLAWAMLLLV 141

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                    L       L+I  +++ +    +P A      P+ +A  +  + S  +  +
Sbjct: 142 GVPGAQTFALF-----GLVIVAAVTTMLAATVPVAALSGLAPLTLAALSLLVFSRDMDTM 196

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L  M   +  FF  +   L+ S V  L  +AEKD + AELE AK+ SDE R+RAEE NL
Sbjct: 197 LLVAMTVASQLFFAGLARRLYASAVGTLQSRAEKDAIFAELEQAKANSDEARRRAEEANL 256

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKSRFLA+MSHELRTPLNAILGFSEV++ E  G      Y+EY  DIH SG HLLNLINE
Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPAYREYATDIHDSGMHLLNLINE 316

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSRIEAGRY+LSE A+ L   V EC  M+ LRA+ K       ID SL  +WADE+ 
Sbjct: 317 ILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSKGQTFASLIDDSLPRLWADERA 376

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ++LNLLSNAVKFT  GG + + VGWTS  GQY+S+KD+GPGI E E+ TV++SFG+G
Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRG 436

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           S+AIK+AEQG GLGLPI + ++  HGG F ++SK REG EVI   P +R ++ +P
Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 491


>gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
 gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens DM4]
          Length = 513

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/475 (41%), Positives = 275/475 (57%), Gaps = 5/475 (1%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           K + +   +    + L      +  FD E++ L+ +        L +  L+VA   + + 
Sbjct: 22  KRRGIAREMRSARERLTSTSGLERAFDTELLRLYAQYRVGAGIPLLILALMVAGASSIWV 81

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
                 +W+   +A     L L ++ +    +   +  W    +  +      W +L LV
Sbjct: 82  PAVTAAIWAAGAIAATTLMLLLSRRFLRQAPESLSLKHWGRAFVAAEFGQSAAWAMLLLV 141

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                    L       L+I  +++ +    +P A      P+++A  +  I S  +  +
Sbjct: 142 GVPEARTFALF-----GLVIVAAVTTMLAATVPVAALAGLVPLMLAALSLLIFSSDMDTM 196

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L  M   +  FF  +   L+ S V  L  +AEKD + AELE AK+ SDE R+RAEE NL
Sbjct: 197 LLVAMTVASQLFFAGLARRLYASAVGTLQSRAEKDAIFAELEQAKANSDEARRRAEEANL 256

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKSRFLA+MSHELRTPLNAILGFSEV++ E  G      Y+EY  DIH SG HLLNLINE
Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPAYREYATDIHDSGMHLLNLINE 316

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSRIEAGRY+L+E A+ L   V EC  M+ LRA+ K       ID SL  +WADE+ 
Sbjct: 317 ILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFASLIDDSLPRLWADERA 376

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ++LNLLSNAVKFT  GG + + VGWTS  GQY+S+KD+GPGI E E+ TV++SFG+G
Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVKDSGPGIPEDELGTVMSSFGRG 436

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           S+AIK+AEQG GLGLPI + ++  HGG F ++SK REG EVI   P +R ++ +P
Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 491


>gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase
           [Methylosinus trichosporium OB3b]
 gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase
           [Methylosinus trichosporium OB3b]
          Length = 514

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/487 (39%), Positives = 285/487 (58%), Gaps = 5/487 (1%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RS++ +    G+ +    + L          D  ++  +  +    +      + +VA +
Sbjct: 18  RSQRRRR---GVKVREAREKLTTSDTGHRGCDVGLLRAYASARLHSAVPASALIAMVAGL 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
             ++ +  +  +W+    +         K++         V  WR   +  + A GL W 
Sbjct: 75  TRYWMEGELEIVWTTFAFSTLLLCYGFAKRLDRLADADINVISWRSKFVAAEFAHGLVWA 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMS 181
            +  +      P     +  A L++A + + +    +P AV+ +  P+ +A+     + S
Sbjct: 135 SMAALLLQAGDPNAKA-FVLAMLMLAAAFNTMVAATIPIAVYATVTPISIAIVACLRVSS 193

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           +    +SL  ++  A  FF  +         + L  + EKDDLI ELE AK+ SDE R+R
Sbjct: 194 LEDTSLSLLALVGAAQVFFVVLAKRFHHVTRESLFFRIEKDDLIGELEQAKANSDEARRR 253

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AEE NLAKSRFLA+MSHELRTPLNAILGFSEV++ E  G      YK+Y  DIH SGQHL
Sbjct: 254 AEEANLAKSRFLATMSHELRTPLNAILGFSEVLKNELFGVHAVAAYKDYSNDIHSSGQHL 313

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L LINEILDLSR+EAGRYEL E ++SL  +V +C  +L +RAQ++ IE+ +  +P L  +
Sbjct: 314 LMLINEILDLSRVEAGRYELKEESVSLATMVEDCRHLLTIRAQKRGIEMIEMTEPDLPRL 373

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           WADE+ +RQ++LNLL+NA+KFT  GG+V + VGWTS  GQY++I+D GPGI E EI  V+
Sbjct: 374 WADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYVAIRDTGPGIPEEEIAVVM 433

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +SFG+G++A K+AE+G GLGLPI + ++  HGG F + SK+REG E I + P  RV+N +
Sbjct: 434 SSFGRGTLAQKNAEEGTGLGLPIVKGLIDLHGGLFKLASKVREGTEAIVVFPPERVMNAL 493

Query: 482 PEDNHES 488
           P+ + E+
Sbjct: 494 PKFDDEA 500


>gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 553

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 186/485 (38%), Positives = 275/485 (56%), Gaps = 7/485 (1%)

Query: 2   YRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVAN 61
           ++ R  +  ++   +    D L      K +F+ E++T+   +       +P    +   
Sbjct: 25  HQPRAPRRSNLDDELRSFRDRLTHGTAHKPEFEYELLTMFARNETSAPFAMPALCFIFYI 84

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
              ++       MW  I        L   +++++       V  WR   +  +   GL  
Sbjct: 85  ASMFWASLMEATMWIAIVSISRVYMLDQCRRLLSIPRADVNVGQWRRHFVRVEAINGLAL 144

Query: 122 TLLTLV-------EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
               L+                  ++  ATL++ L+I    +  LP+       P+ +A+
Sbjct: 145 AAFALIGISNTPTAHSLPATFSSHVFIFATLMVVLAIRMTFSSTLPHVFLAGTVPMTLAV 204

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + +  M       +LA M      FF Y+   L  + + ++  +AEKD LI+ELE A ++
Sbjct: 205 TGRLFMLGDPFYFALASMAIGIHVFFVYLAQGLHSTALAMVEYRAEKDSLISELEEASAI 264

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           SDE R+RAE  N AKSRFLA+MSHELRTPLNAI+GFSEV+E E +GP+ ++TY+EY  +I
Sbjct: 265 SDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGSDTYREYAHNI 324

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + SG HLL +INEILDLSRIEAGRY+L E  + L DI  +C  +++++A  K + I +  
Sbjct: 325 YESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKADAKTLHIVEDF 384

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P L  VWAD + MRQ+ LNLLSNA+KFT  GGR+ +TVG TS  GQ+++I D GPGI +
Sbjct: 385 APDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFVTISDTGPGIPK 444

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            EIP VL +FGQGS+A ++AE G GLGLPI Q++++ HGG F ++S+LR+G EV   LP 
Sbjct: 445 DEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRKGTEVTVTLPR 504

Query: 475 TRVLN 479
            RVL 
Sbjct: 505 QRVLQ 509


>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 511

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 191/485 (39%), Positives = 296/485 (61%), Gaps = 2/485 (0%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           +++ +G  +    + L          D E++  + E+    +      +L++  +  ++ 
Sbjct: 22  QKRRLGAKVREARERLTTSDTGHRACDLELLRAYAETRVESAISAVALILMMTMLSLYWV 81

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
           +     +WS++  +       + K++   D     V  WR   +V ++  G+ W  +  +
Sbjct: 82  KTNAIFIWSVLAFSSLILCYGMAKRLAYYDDSKITVKRWRTKFVVTELVHGVVWAGVAGI 141

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLD 186
                 P    I+  A +L++ + + +    +P AV+ +  P  + +      +      
Sbjct: 142 LLSCKDPNAR-IFVIAMMLLSAAFNTMVTATIPVAVYAAIVPTSLTIVFFIGFTGFGDTS 200

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           ++L  M+A    FF  +     +   +    +AEK++LI ELE AK+ SDE R+RAEE N
Sbjct: 201 VALLAMVAVTQVFFFVLAKRFHQLASESQFFRAEKNELITELEQAKANSDEARRRAEEAN 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           LAKSRFLA+MSHELRTPLNAILGFSEV++ E  GP  N  Y++Y  DIH SGQHLL LIN
Sbjct: 261 LAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHANPAYRDYSNDIHSSGQHLLMLIN 320

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           EILDLSR+EAGRYEL E ++SL+ + +EC  +L +RAQ+++I + + ++PSL  +WADE+
Sbjct: 321 EILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQKRDIRMIEVVEPSLPRIWADER 380

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQVILNLL+NA+KFT  GG+V + VGWTS  GQYI+IKDNGPGI E EI  V++SFG+
Sbjct: 381 AVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYIAIKDNGPGIPEDEIAVVMSSFGR 440

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G +A K+A++G GLGLPI + ++  HGGQF+++SK+REG + I + P  RV+N +P+ + 
Sbjct: 441 GMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVREGTDAIVVFPAQRVMNALPKFDT 500

Query: 487 ESTQY 491
            + Q+
Sbjct: 501 PADQH 505


>gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 501

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 216/480 (45%), Positives = 312/480 (65%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R R  +  D+   +    + L      + +F+RE++  H  ++   + +LPL V+L    
Sbjct: 16  RRRATRNGDLTRTLKAARERLSARGGLQPNFERELLVQHAAAIQAAAIVLPLPVILTGFG 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
            + FT      +W+   L  + A + + ++    ++    +  W    L G +A GL W 
Sbjct: 76  LSIFTGPLPAILWTGFALLGHFALVVVSRRFPADNLTRAGITRWSRIFLAGHVAAGLSWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L  +      P    +++   + +A+++ A+ +  L   V L+F P ++ L    + + 
Sbjct: 136 YLATLACAECQPLRFELFQFTVIFLAIAMIAMVSSTLRAVVPLTFLPTILVLGYGIVTTA 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +  ++ G+L  A+ FF ++   L ++++  L  Q+EKD+LIAELE+AK +SDE R RA
Sbjct: 196 QPMASAMYGVLIGAVPFFAFVAEMLRRASIARLKHQSEKDELIAELEMAKIMSDEARSRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLA+MSHELRTPLNAILGFSEV+  E +GP+ NE+YK+YI DIH SGQHLL
Sbjct: 256 EEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGNESYKDYIADIHASGQHLL 315

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LINEILDLSR+EAGRY LSE A+ ++ I R+C+  ++++A+ K++ I  + +  L ++W
Sbjct: 316 GLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAEAKDLVIGAEFEADLPAMW 375

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQ+ILNLLSNAVKFT  GG + + VGWT+G GQY+++KDNGPGI E EIP VL+
Sbjct: 376 ADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLAVKDNGPGIPEEEIPIVLS 435

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           SFGQGSIAIKSAEQG GLGLPI Q++M  H G F +RS+LREG E IAI PN+RVL  +P
Sbjct: 436 SFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRSRLREGTEAIAIFPNSRVLEVMP 495


>gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
 gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
          Length = 463

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 192/453 (42%), Positives = 274/453 (60%), Gaps = 1/453 (0%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100
            V++   V+  +P+  ++ A I + +    +   W +  L  ++  +   K++  S  + 
Sbjct: 2   FVKNRLSVAYAMPMIAIVAATISSVWLPVEVAGGWLVAMLLAHSIIILSTKRMEKSLSQE 61

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
           G +   R  L  G +  G+ W +  +      T     +++ AT+LI ++++ + +  LP
Sbjct: 62  GNLRSIRRELFAGDMLYGIVWAIFFISNLQFNTDYGFGVFQFATMLIVIAMATMLSSPLP 121

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            A+  +  P+  AL         +   ++  M   A  FF  ++  L  S + +L  +AE
Sbjct: 122 GALLAATAPITGALIFSFWQYDSMPHYAMGLMAIGAQVFFYILSKQLHTSALTLLEYRAE 181

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           KD LI+E+E   ++S E R+RAEE NLAK+RFLA+MSHELRTPLNAILGFSEV++ E +G
Sbjct: 182 KDHLISEMEQVNAISQEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLG 241

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P++N+TY +Y  DI++SGQHLLNLINEILDLSRIEAGRYEL E  + L D+   C  M+ 
Sbjct: 242 PMHNQTYLDYSKDINQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMH 301

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +RA  KNIEI +  +  LS VWADEK +RQ++LNLL+NAVKFT   G + + VG     G
Sbjct: 302 MRAAAKNIEIHEVYEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGG 361

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           QYIS+ D G GI E EIP VL +FGQG+ AI+ AEQG GLGL I Q++   H G+F + S
Sbjct: 362 QYISVSDTGAGIPEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLAS 421

Query: 461 KLREGVEVIAILPNTRVLNFI-PEDNHESTQYK 492
           KLREG +    LP  RVL+ I P    + T  K
Sbjct: 422 KLREGTQATISLPAKRVLSHIDPIPTPDPTTGK 454


>gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase
           [Mesorhizobium sp. BNC1]
 gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase
           [Chelativorans sp. BNC1]
          Length = 505

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 209/479 (43%), Positives = 294/479 (61%), Gaps = 2/479 (0%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R++ ++  DV   +  T D L  +      FDRE++ +H  ++   +P +   +LL+   
Sbjct: 16  RTKPHRNSDVAKAVRHTRDQLSRKAG-NRSFDREMLKIHARTIISSAPAVLFVLLLIGAA 74

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G          +W ++  A Y A     + +    I   +     +  L+     G+ W 
Sbjct: 75  GYAVGPAREMAIWGMLAAAGYTALYLFARYIDKRSIDQIDARKVHVQFLLLHFFSGISWI 134

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L   E       +   + +  LL+ ++ +AL    L  AV  +F   V   +   +   
Sbjct: 135 YLVSFECRCGFLNFS-FFVAIVLLMMIAATALVCSSLRGAVLATFGLPVAIHALLHLEFP 193

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             ++  +  +L  +L FF ++ +H  ++ + +LS ++E + LIAELE AK++SDE R RA
Sbjct: 194 LGVEPVMTLLLVLSLPFFGHVAHHRNQAAISLLSFRSENESLIAELETAKAVSDEARHRA 253

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE NLAKSRFLASMSHELRTPLNAILGFSEV+  E +GP+ N TY+EY  D+H+SGQHLL
Sbjct: 254 EEANLAKSRFLASMSHELRTPLNAILGFSEVMAKEVLGPVQNVTYREYAKDVHQSGQHLL 313

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LINEILDLSRIEAGRY+L+E  ++L DIV EC  M+ L+ + K+I++ Q+ +PSL ++ 
Sbjct: 314 ELINEILDLSRIEAGRYQLNEEPLALADIVHECCRMMDLKLKAKDIKLVQQFEPSLLNLM 373

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ +RQ+ LNLLSNAVKFT  GG + V VGWTSG GQYISI DNGPGI+E E+P VL+
Sbjct: 374 ADERAVRQISLNLLSNAVKFTPSGGEIRVRVGWTSGGGQYISICDNGPGISEEEMPLVLS 433

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +FGQGS+AIKSAEQG GLGLPI Q +   HGG   ++SKLREG     I P +RV+   
Sbjct: 434 AFGQGSVAIKSAEQGTGLGLPIVQGLTHLHGGLLRLKSKLREGTVATVIFPRSRVVEEA 492


>gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 508

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/484 (36%), Positives = 265/484 (54%), Gaps = 2/484 (0%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           M  +R  + +      S            K DF  +++ + V +    +  +P+  + VA
Sbjct: 1   MSTARSLRWRRFKQKTSIAAPQQSNSSAVKHDFAYDLLIMFVRNETVAALTVPILAIFVA 60

Query: 61  N-IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
             +  W T+     +W           L+L ++      +  ++  WR  L   +   G+
Sbjct: 61  ATMLNWATEPRQLLLWLATIFITEGILLALCRQFKRQPRETVDLVQWRRNLAAAEFLYGV 120

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
           CW  +    P     +    +  A L +  +I  +    +   +     PV  AL+ + +
Sbjct: 121 CWAAVA-FTPFVVQSQAAFFFLFAALTVVTAIRMMFAASVMQILHAGTAPVTGALALRFL 179

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           M+      +LA +      +F ++  +L ++ + +L  +AEKD LI ELE AK+ SDE R
Sbjct: 180 MTGEPFYWALAVVAVGIHFYFVFLVKNLQRTALSMLDYRAEKDRLIEELERAKAASDEAR 239

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            RAE  N+AKS+FLA+MSHELRTPLNAI+GFSE+I+ E +GP++NE Y+ Y  DIH SG 
Sbjct: 240 VRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDNENYRSYAADIHESGS 299

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LINEILDLSRIEAGRYEL+E  I +     E + ++++ A +KN+ +     P + 
Sbjct: 300 HLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAHQKNLRVVTDFRPDMP 359

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + ADE+ +RQ+ LNLLSNA+KFT   G + V  G        +S++DNGPGI E EI  
Sbjct: 360 RIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLSVRDNGPGIPEEEISQ 419

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           VL +FGQGS+A+K+ E G GLGLPI   +   HGG+F +RSKL  G E   ILP  RVL 
Sbjct: 420 VLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRSKLGVGTEASLILPKARVLP 479

Query: 480 FIPE 483
            +P+
Sbjct: 480 AVPQ 483


>gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
 gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
          Length = 507

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/487 (42%), Positives = 297/487 (60%), Gaps = 7/487 (1%)

Query: 3   RSRKNKEKDVG-LLISPTGDHLGLEYPSKMDF-DREIITLHVESLFRVSPILPLFVLLVA 60
           R+RK + K  G  ++     +L         F + E++  H   L   S ILP  V+L  
Sbjct: 16  RARKPRSKHAGSKVVRSARQNLKRHSRRNASFIEAELLVQHAAQLRAASIILPAPVILAG 75

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW-----LLVGQI 115
              + FT   +   W+L TL  Y   + L ++      +                L G  
Sbjct: 76  FGLSIFTGATVAAAWTLATLGAYLIIVILARRADTGTQESDGFTKAPHIAHALPFLAGHT 135

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             GLCW+ L  +E    T     ++  A L++A++++A+ +  L + V ++F P+VV LS
Sbjct: 136 FAGLCWSALAFLECPGCTAIRFELFHFAALVLAIAMTAMISSTLRFVVLIAFSPLVVGLS 195

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             A  +   + +++ G++  A+ FF ++   L +  V  +  QAEKD+LI+ELE ++ LS
Sbjct: 196 LDAFANPDKMSVAMQGVVIGAVPFFAFVAEALRRGAVARIRHQAEKDELISELERSRILS 255

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           DE R+RAE+ N AKS+FLA+MSHELRTPLNAILGFSEV+  E  GPL +  YKEY+ DIH
Sbjct: 256 DEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGSPNYKEYLTDIH 315

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+HLL +INEILDLSR+EAG+Y L+E A+ L  I  +C   ++LRA++K I I    +
Sbjct: 316 SSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAEDKRIAIQMHFE 375

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             L ++W DE+ +RQ++LNLLSNAVKFT   G + + VGWT+G GQY+ + DNG GI + 
Sbjct: 376 EGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYVGVSDNGAGIPQD 435

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           EIPTVL SFGQGS AIK+AEQG GLGLPI Q+++  H GQF + S+  +G +VIAI P +
Sbjct: 436 EIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGKGTDVIAIFPQS 495

Query: 476 RVLNFIP 482
           RVL  +P
Sbjct: 496 RVLEVMP 502


>gi|217977515|ref|YP_002361662.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
 gi|217502891|gb|ACK50300.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
          Length = 518

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/463 (40%), Positives = 267/463 (57%), Gaps = 2/463 (0%)

Query: 19  TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI 78
             + +        DFD  ++ L  +     +  +     + A I   + +      W  I
Sbjct: 32  AAERIEAPTFDPRDFDAALLALFAKGRRSSAVTMATLSAIFAAIALTWIEVDAVVTWLCI 91

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
           +LA       + ++    D+   E   WR   +  +   G  + LL  +      P  L 
Sbjct: 92  SLAAQVLTQLIARRFPQQDLAHAEARRWRRDFIAAETIQGAIFALLVALVGHAEDPAALA 151

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TAL 197
                 LL+A +++A  +  +P A      PV +A+ +           +   +L   A 
Sbjct: 152 CAVVMGLLVA-AMNATISPSIPAAAVGGMAPVALAMLSLLGAPHLADGAAQMIVLGFGAQ 210

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             F  +   L+ S ++ LS QAEKDDLIAELE +K+ SD  R+RAEE NLAKS FLA+MS
Sbjct: 211 LCFLMLARKLYASALEALSFQAEKDDLIAELEQSKANSDLARRRAEEANLAKSHFLATMS 270

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAILGFSEV++ E  G     +YKEY  DIH SG HLL LINEILDLSRIEAG
Sbjct: 271 HELRTPLNAILGFSEVMKGELFGAHIVASYKEYSNDIHASGHHLLMLINEILDLSRIEAG 330

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           R EL E A++L  IV +C  +L LRA+++ + I + I+  L  + ADE+ +RQ+ LNLLS
Sbjct: 331 RLELKEEAVALDHIVEDCHHLLALRAKKRGVTITEAIEADLPRIRADERAVRQMTLNLLS 390

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT  GGRV + +GWT+  GQY++++D+GPGI E EIP V++SFG+G++A K+AE+G
Sbjct: 391 NAVKFTPPGGRVRIRIGWTAAGGQYLAVRDSGPGIPEEEIPIVMSSFGRGALARKNAEEG 450

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            GLGLPI + ++  H G F+++S + EG E I I P +R++  
Sbjct: 451 SGLGLPIVKGLVELHEGTFILKSNVGEGAEAIVIFPASRIIPP 493


>gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 594

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/460 (38%), Positives = 257/460 (55%), Gaps = 6/460 (1%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
               +  F  E+   +        P+L     L+A +G  +    +   W    L     
Sbjct: 66  SGSGEQTFALELAQTYARKRLASLPLLAGLDCLLAAVGLAWLDGALVAGWLGFNLLGLTL 125

Query: 86  NLSLGKKV----MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
              L  +             E+  W+   ++G+   GL W L   +         LTI  
Sbjct: 126 VYHLLTRFLTPSDVHCPTPSELKTWQTGFVLGEGLHGLVWGLFIGLIVEAGGEPALTIGL 185

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGMLATALSFF 200
              L I  + +      +P  VF    P+  A++    +  +    + LAG+ +  L +F
Sbjct: 186 VFALAIG-ATNLRLTAPIPACVFGPLLPMATAIAIISRLTIVSQQAMPLAGLASAVLLYF 244

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 +    ++ L+ Q EKD+LI ELE A+  SD  R+RAEE NLAKSRFLA+MSHEL
Sbjct: 245 LVTAQKIRAGVLEKLTIQNEKDELITELEQARVNSDLARRRAEEANLAKSRFLATMSHEL 304

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAILGFSEV++ E  G     +YK+Y  DIH SGQHLL LINEILDLSRIEAG  E
Sbjct: 305 RTPLNAILGFSEVMKGELFGAHVISSYKDYSNDIHASGQHLLTLINEILDLSRIEAGHLE 364

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L +  ++L  +V +C  +L L+A+++ + I + ++P L  + ADE+ +RQV LNLL+NAV
Sbjct: 365 LRDDCVALAHVVDDCRHLLALKAKKRGLTIEEHVEPDLPRLRADERALRQVALNLLTNAV 424

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG + + +GWT+  GQY+SI D+GPGI E E+P V++SFG+G++A K+A +G GL
Sbjct: 425 KFTPPGGWIKIKIGWTANGGQYVSIHDSGPGIPEEEMPIVMSSFGRGTLAQKNALEGSGL 484

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GLPI + ++  H G F ++S+L EG E I +LP  RVL  
Sbjct: 485 GLPIVKGLVDLHNGTFSLKSRLHEGTEAIVVLPAERVLAA 524


>gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
 gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
          Length = 526

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/488 (40%), Positives = 290/488 (59%)

Query: 5   RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64
           +    + V       G+H  +       FD +++  H     +   ++   + +      
Sbjct: 26  QSKSGRAVKAARQGLGNHTTIRDAHAASFDHDLLVRHAHVQQQTFVMVISLLAIATYTTH 85

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
           +     +   W + + A+   N    KK +  +    +   W       Q A G+ W  L
Sbjct: 86  FGVDLMVLGGWLIGSTALAILNQLYAKKFLALEKDKTDRKKWLRIFTAFQFAGGVLWAGL 145

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
               P   T    +I      ++  S+S +++  + + V  +  P++  +  Q +M   V
Sbjct: 146 FAHLPVLETSGAFSIMCFLGAMVVTSLSFIASRNISWGVIAAAAPLLTVIVLQLMMVSTV 205

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + LA ++  +L+F+ ++   +    +  +S +AE+D L+ ELE ++ +S+E R+RAEE
Sbjct: 206 PALGLAMLMIVSLAFYHFVGRLIRDGQLDAISSRAERDQLVMELEASRGISEEARRRAEE 265

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            NLAKSRFLA+MSHELRTPLNAILGFSE++  E MGP++N+ YKEY+ DIHRSG HLL L
Sbjct: 266 ANLAKSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKL 325

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           INEILDLSRIEAGRYEL+E  + L   V E   M++L+A +K +++  ++ P + +VWAD
Sbjct: 326 INEILDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWAD 385

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +RQ++LNLLSNA+KFT  GG + +  GWTSG GQYI+I+D GPGI E EIP VL+SF
Sbjct: 386 ARAVRQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSF 445

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           GQGSIAIKSAEQG GLGLPI Q++M  H G+F +RSKLR G EV A  P +RV+     D
Sbjct: 446 GQGSIAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFPRSRVMPTAQAD 505

Query: 485 NHESTQYK 492
            +E+ + +
Sbjct: 506 QNENAKVR 513


>gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter
           bemidjiensis Bem]
          Length = 554

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 192/530 (36%), Gaps = 82/530 (15%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWSLITLAVYAAN 86
             +   I    V+ L+R++P+  +  L+ A +  +             W    + V    
Sbjct: 19  ALYKELIFAEQVKQLYRLAPLGMVATLVNALLVFFVMKDVMPRRFLIFWLFGIVLVTLLR 78

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
             LG +      +  +  +W    L+G   IG  W  + +      +  +L         
Sbjct: 79  GLLGFQYAKHPPEPAQARLWANRFLIGLAVIGAAWGSIGVFSFAEASMAHLVFISFVLGG 138

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A   S      + +A      PV++ L    ++        +A M          I+ H
Sbjct: 139 MAAGASTTFA-TVRHAYLAFSIPVLMPLIVHFLLIQDTFHSFMAAMTTLFGFLLWRISLH 197

Query: 207 LFKSNVKILSCQAEKD-------------------------------------------- 222
            +  N   L    E                                              
Sbjct: 198 NYTINRDSLLLSYENREMVETMKQAKERAEGLNSQLMEENAARLEAEAALRANQEQLEKL 257

Query: 223 ------DLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHE 259
                 DL++  E  K   +E                  ++++E  N AK+ FLA+MSHE
Sbjct: 258 VEVRTADLVSSNEQLKKEIEERKQYEKALLQTGERLAVAQRQSEAANRAKTEFLANMSHE 317

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPL   LG   ++    +G       ++ +    RS   LL +I ++LD SR+EAG  
Sbjct: 318 MRTPLAGALGMIRLVLDMNIGA----EERQLLEMAKRSADSLLRIIADLLDFSRLEAGVM 373

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
              +   SL ++VR  + ++ L A+EK + +   +D ++   +  DE  +RQV++NLL N
Sbjct: 374 TFEDKPFSLKEVVRSAVEVVSLVAEEKELHLSWSVDGAVPDQLSGDEGRLRQVLVNLLGN 433

Query: 379 AVKFTAIGG-RVHVT----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           AVKFT  GG  V +     +     R     ++D G GI   ++  +   F Q   ++  
Sbjct: 434 AVKFTERGGIEVSIKTLEPLEAQGERYVEFYVRDTGVGIPADQLQRIFDRFTQVDSSLTR 493

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
              G GLGL + + I+   GG     S +  G      +P        PE
Sbjct: 494 RHGGTGLGLALTRQIVEKMGGSIWAESVIGSGSTFHFTVPMVPSAAAGPE 543


>gi|253699184|ref|YP_003020373.1| histidine kinase [Geobacter sp. M21]
 gi|251774034|gb|ACT16615.1| histidine kinase [Geobacter sp. M21]
          Length = 550

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/534 (20%), Positives = 198/534 (37%), Gaps = 82/534 (15%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWSLITLAVYAAN 86
             +   I    V+ L+R++P+  +  L+ A +  +             W    + V    
Sbjct: 19  ALYKELIFAEQVKQLYRLAPLGMVATLVNALLVFFVMKDVMPRRFLIFWLFGIVLVTLLR 78

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
             LG +      +  +  +W    LVG +AIG  W  + +      + E+          
Sbjct: 79  GLLGFQYAKHQPEPAQARLWANRFLVGLLAIGAAWGSIGVFSFAEASMEHQVFIAFVLGG 138

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A   S      + +A      PV+V L+   ++   +    +A M          I+ H
Sbjct: 139 MAAGASTTFA-TVRHAYLAFSIPVLVPLAVHFVLIQDIFHYLMAAMTTLFGFLLWRISLH 197

Query: 207 LFKSNVKILSCQAEKD-------------------------------------------- 222
            +  N   L    E                                              
Sbjct: 198 NYSINRDSLLLSYENREMIETLKQAKERVEGLNSQLMEEITARLEAEAALRGNQEQLENL 257

Query: 223 ------DLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHE 259
                 DL++  E  K   +E                  ++++E  N AK+ FLA+MSHE
Sbjct: 258 VEVRTADLVSSNEQLKKEIEERKQYEQALLQAGERLAVAQRQSEAANRAKTEFLANMSHE 317

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPL   LG   ++    +G       ++ +    RS   L+ +I ++LD SR+EAG  
Sbjct: 318 MRTPLAGALGMIRLVLDMNIGA----EERQLLEMAKRSADSLVRIIADLLDFSRLEAGVM 373

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
              +    L ++VR  + ++ L A+EK + +   ++ ++   +  DE  +RQV++NLL N
Sbjct: 374 TFEDKPFLLKEVVRSAVEVVSLVAEEKGLSLSWAVNAAVPEQLRGDEGRLRQVLVNLLGN 433

Query: 379 AVKFTAIGG-RVHVT----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           AVKFT  GG  V +     +     +    S++D G GI   ++  +   F Q   ++  
Sbjct: 434 AVKFTERGGIEVGIGTFEPLEAQGEQYVEFSVRDTGVGIPADQLERIFDRFTQVDSSLTR 493

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              G GLGL + + I+   GG     S +  G      +P        PE + +
Sbjct: 494 RHGGTGLGLALTRQIVEKMGGSIWAESVVGSGSTFHFTVPMVSNAAAGPERDSD 547


>gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 618

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/339 (32%), Positives = 173/339 (51%), Gaps = 16/339 (4%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------------LATALS 198
           ++A     L +A F +   + +A     I+S+ +     A              + T + 
Sbjct: 277 VTATVLSSLSWASFWALLALFLAFVVGYILSIKISKPITAIREISQKLSKGDFDIGTPID 336

Query: 199 FFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   L  + ++  +   E    L  +++   +  +  +  AE  N AKS FLA+MS
Sbjct: 337 TRIIEMESLNDALIESANRLKELYQSLEQKVKERTAELEIAKIHAEAANRAKSEFLANMS 396

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GF+EV++ +  G L NE   EY+ DIH S +HLLNLIN+ILDLS+IE G
Sbjct: 397 HELRTPLNSIIGFTEVLQDQLFGTL-NEKQLEYLKDIHDSAKHLLNLINDILDLSKIEEG 455

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376
           + EL  S   + D+V   +IM + +A +  I++  +I   +  +V ADE+ ++QV+ NL+
Sbjct: 456 KTELELSEFRVSDVVNVSLIMFKEKASKHGIKLDAEISKEADITVTADERKIKQVLFNLV 515

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNAVKFT  GG V +T          I ++D G GI + +   +   F Q         Q
Sbjct: 516 SNAVKFTPDGGSVKITAERKED-MIEIVVEDTGIGIKKEDRDKLFQPFSQLETTYTKKYQ 574

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL +++S++  HGG+    S+  +G       P  
Sbjct: 575 GTGLGLALSKSLVELHGGKIWCESEYGKGSRFGFSFPVK 613


>gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 732

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 3/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    E +  AE  N  KS+FLA+MSHELRTPLN+I+GFS+V+  E  G L N
Sbjct: 482 ITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEAFGKL-N 540

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+Y  +I+ SG HLL++IN+ILDLS+IEAG+ EL+     L +I+ E    L+   +
Sbjct: 541 EKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLVK 600

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K + +          V+AD+  ++QV+ NLLSNA+KFT   G++ + +         IS
Sbjct: 601 KKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDC-GEEEITIS 658

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D+G GI   E   +   F Q         QG GLGL + ++I+  HGGQ  + S+  +
Sbjct: 659 VSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVESEAGK 718

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 719 GSTFKFTLPLQ 729


>gi|154251517|ref|YP_001412341.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155467|gb|ABS62684.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 509

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 240/479 (50%), Gaps = 8/479 (1%)

Query: 2   YRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVAN 61
           ++   ++ + +   ++ T    G   P       E + + V+S     P     ++++  
Sbjct: 24  HKQPAHQLRTLQSRLARTLPWRGNGEPLAAQIRLEQLRMFVDSQKLPVPYAFPALMILYA 83

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKK----VMNSDIKIGEVYVWRIWLLVGQIAI 117
              +     I   W ++ + +      L ++     + +  +  ++ +W    L   +  
Sbjct: 84  ACFY---QSIAWYWLVVPVVMLFGANWLNRRVIAKFLVAAPEGNDIAIWERRFLTVALCF 140

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
            +              P       +A LL+ L+ +AL       A +    PVV+A   +
Sbjct: 141 SISIASTVFFFWVPGDPVQQAFVLTA-LLVTLAPTALITSCYKPAFYARVLPVVLAAGLR 199

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            +    V  +SLA +L    +    +T  L    +  ++ + +K+ LI +L  AK  SD 
Sbjct: 200 LVSYGDVQHLSLAAVLLIFTALLAQLTSRLNGIILHSITLREDKNGLIEQLFKAKRESDA 259

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R RAEE N AKS FLA+MSHELRTPLNAI+GFSEV+  E  G     TYKEY  DI+RS
Sbjct: 260 ARARAEEANRAKSHFLANMSHELRTPLNAIIGFSEVMASEIFGKHGVPTYKEYANDINRS 319

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQHLL LIN++LDLSRIEAGR++++E  + +  +  +C  +L++RAQ + + I +     
Sbjct: 320 GQHLLGLINDVLDLSRIEAGRFQITEEEVDIAHLAEDCRRILEIRAQAQRVSITEDFADG 379

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V+ D + +RQ  +NLL+NA+KF+     V +     +       + DNGPGIAE EI
Sbjct: 380 LPIVYGDARALRQTWINLLTNAIKFSPPDSEVKMFARMEASGEMRFGVHDNGPGIAESEI 439

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             VL +F QG+  +    +G GLGL I + ++A HGG+F ++S+L  G +    LP  R
Sbjct: 440 DKVLHAFTQGASGLAQPGKGSGLGLSIVKGLLAVHGGRFELKSQLGAGTQAECTLPPQR 498


>gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 1046

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 2/255 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     ++    + +  AEE N +KS FLA++SHELRTPLN+I+GFS+++  +  G L N
Sbjct: 480 ITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFGEL-N 538

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y+ +I  SG+HLL LIN+ILDLS++EAG+ EL  S  S+  +  E   +L    Q
Sbjct: 539 EKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLFPLIQ 598

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K +E+   ++P  +++ AD   + Q++ NL+SNA+KFT  GG+V V     SG    IS
Sbjct: 599 AKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCK-ESGNRALIS 657

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+  +   +   F Q   +      G GLGL + + I+  H G   + S   +
Sbjct: 658 VIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVESDPGK 717

Query: 465 GVEVIAILPNTRVLN 479
           G      LP  + L 
Sbjct: 718 GSNFTFALPLRKPLE 732


>gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 995

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 5/260 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      +  AE  N AKS  LA++SHELRTPL +I+GFS+VI    +G L
Sbjct: 739 RDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSIIGFSDVILKRKVGDL 798

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+    Y+  IH+SGQHLL+LIN+ILDL++IE+G+ EL    IS+  ++ +    L   
Sbjct: 799 -NDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISIPALLNDLESKLYPF 857

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A +K + +  +IDP++  ++ADE  +RQ++ NL+ NA+KFT   G V VTV   +   Q 
Sbjct: 858 ASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNK-GSVTVTVRQKNDAYQ- 915

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI E +   +  SF Q          G GLGL + + ++  HGGQ  + S+ 
Sbjct: 916 FSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLVEIHGGQIWVESEE 975

Query: 463 REGVEVIAILPNTRVLNFIP 482
            +G      +P+T+  + +P
Sbjct: 976 SKGTTFTFTIPSTK--SELP 993


>gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 599

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 144/253 (56%), Gaps = 2/253 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++A++   +++  AE+ N  KS FLA+MSHELRTPLN+I+G+S+++     G L+ 
Sbjct: 347 ITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSGNLDE 406

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K Y  +I  SG+HLL LIN ILD+S++EAG+ E     ++L + + + I +++  A 
Sbjct: 407 KELK-YSHNILNSGEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVKPLAM 465

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K+I+I    + +++ VW D    +Q++ NLLSNA+KFT   G V + +  T      IS
Sbjct: 466 KKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLS-TDDGTAQIS 524

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +I  +   F Q + +     +G GLGL + +  +  H G+  + S++  
Sbjct: 525 VADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVESEVGA 584

Query: 465 GVEVIAILPNTRV 477
           G      L    V
Sbjct: 585 GSTFTFTLSVKEV 597


>gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 456

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 94/254 (37%), Positives = 146/254 (57%), Gaps = 2/254 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    E +  AE  N AKS FLA+MSHELRTPLN+I+GFS+V+  E+ GPL
Sbjct: 200 RDITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPL 259

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  K+Y  ++ R+G+HLL++IN+IL +S IE G  EL  +   + D + E   ++ L 
Sbjct: 260 -NEYQKKYTSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILI 318

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A EK+I++   ID  + ++  D    +Q++ NL+ NA+KFT  GG V +  G  S    +
Sbjct: 319 ASEKDIDLTCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIG-GKISDDLVH 377

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS+KD+G G++  +   +   F Q   +      G GLGL + +  +  HGG+  + S++
Sbjct: 378 ISVKDSGIGVSPEDQDKLFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEV 437

Query: 463 REGVEVIAILPNTR 476
            +G     I+P   
Sbjct: 438 GKGSTFTFIIPTKP 451


>gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 818

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 90/271 (33%), Positives = 147/271 (54%), Gaps = 3/271 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             ++    L   +        +     +  N  KS FLA+MSHELRTPLNAI+GF+EV++
Sbjct: 271 KLRSSYAMLEQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLK 330

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +  G L N   ++++ DIH SG+HLL +IN+ILDLS+IEAG+ EL   +  + D + + 
Sbjct: 331 DKLCGEL-NAEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDV 389

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             +L+  A++K +++   I   +  + AD    +Q++ NLLSN++KFT   G +      
Sbjct: 390 YTILKGLAKKKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAI 449

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+ Q +S+ D+G GI   +   V   F Q   +     +G GLGL + + I+  HGG+
Sbjct: 450 VDGKMQ-VSVSDSGIGIKPEDREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGK 508

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI-PEDN 485
             ++S+  +G      +P T+    + PED 
Sbjct: 509 IWLKSEYGKGSTFYFTIPVTKSQRILHPEDE 539


>gi|293607366|ref|ZP_06689705.1| periplasmic sensor hybrid histidine kinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292814210|gb|EFF73352.1| periplasmic sensor hybrid histidine kinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 608

 Score =  324 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/469 (21%), Positives = 178/469 (37%), Gaps = 20/469 (4%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPI 71
           + PT        P    +   I  + +++L R  P      L+ A    +          
Sbjct: 1   MQPTLGQTPSATPPSPAYGARIRQVQIDALRRSFPFALAGSLISACFSAYALRGVLPMHE 60

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
              W + TL V A  L+          +      W   +LVG +A GL W L        
Sbjct: 61  VLAWIVATLLVGALRLAAMIAYDRHLTQPDAAARWVRRMLVGNLASGLLWGLPFAYWTLF 120

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
              EY   +      +       SN+ML   ++    P    +          + ++L  
Sbjct: 121 VPLEYQLFFIVILFGLGTGAI-YSNYMLLPVMYAFEVPAFAPMFIALAAQPSAIHLALVT 179

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                L       + + ++++  L    E   L+ ++          +  AE  +L KSR
Sbjct: 180 GGLAYLVATLAFIHRMNRTHLDALRLGYENLALLEQVRQ-------EKIAAERSDLEKSR 232

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+ SH+LR P++A+  F  ++  E +           + +I  +   +  L + +L+L
Sbjct: 233 FLAAASHDLRQPVHAVNLFLGLLANEPLSRHG----HYLVDNIGSAMTAMGQLFDALLNL 288

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           SR++AG  E      +L  ++ +       +A+EK + +  +  P  + +W+D   + ++
Sbjct: 289 SRLDAGVIEPRWQGFALNPLLDQLRAEYAPQAREKGMSLRVR--PCAACIWSDPVLLERI 346

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+SNA+     GGRV +      G    + + DNG GI   E   V   F Q     
Sbjct: 347 LRNLISNAITHA-TGGRVLIGCRRV-GGQLRVEVWDNGVGIPAAEQERVFWEFHQLGNPE 404

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           +   +G+GLGL I +      G    +RS+  +G   +   P       
Sbjct: 405 RDRSKGLGLGLAIVRRTARLLGHPLALRSQAGQGTVFMLTAPIADPAQA 453


>gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 625

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 99/254 (38%), Positives = 156/254 (61%), Gaps = 2/254 (0%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I++ + A+  + E +K AE+ N  KS FLA+MSHELRTPLN+++GFS+++  E  
Sbjct: 368 ELFQDISQRKNAEENAIEAKKAAEQANQTKSEFLANMSHELRTPLNSVIGFSDILSKEVR 427

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L N++ K+Y+ +I +SG HLL+LIN+ILDLS+IEAG+ +L  S+  L + + E  I++
Sbjct: 428 GKL-NDSQKKYVSNITKSGSHLLSLINDILDLSKIEAGQKQLEYSSFDLHEALDEISILI 486

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +    +KNI++   + P  S V+AD K  +Q++ NLLSNA KFT   G + + V      
Sbjct: 487 KPLISKKNIDLQMDLPPEDSRVYADRKKFKQIMYNLLSNASKFTPDKGTITI-VANQEKD 545

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GI E +  T+   F Q   A  S  +G GLGL +A+ ++  HGGQ  ++
Sbjct: 546 KLKVAVQDTGMGIPEADQATIFEPFQQVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLK 605

Query: 460 SKLREGVEVIAILP 473
           S++  G      +P
Sbjct: 606 SEVGMGSTFTFTIP 619


>gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 892

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/251 (36%), Positives = 136/251 (54%), Gaps = 3/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E +  +    + +  AE  N AKS FL +MSHELRTPL AI+GFS+V+     G  + 
Sbjct: 322 LSERKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFS- 380

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++ +I  SG+HLL LIN ILDLS+IEAG+ EL     S+ ++  +   +    A 
Sbjct: 381 EQNKKFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALAL 440

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K+I +   +D  +  V+AD    +Q+I NL+SNA+KFT   G V V+   T      IS
Sbjct: 441 KKDISMKYNVDSEIL-VYADRVRFKQIIYNLVSNAIKFTPDRGSVIVSALKTED-SVRIS 498

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+E     +   F Q   +I    +G GLGL + +  +  HGG+    S+  +
Sbjct: 499 VSDTGIGISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGK 558

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 559 GSTFEFELPLK 569


>gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
 gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
          Length = 606

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 187/433 (43%), Gaps = 21/433 (4%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
            LF    +  + V+  +   +W    P    W    + V  A L L  +      ++  +
Sbjct: 42  GLFSNFILAAILVVGTSRSLSWSLHIP----WLAAIVLVSGARLRLNLRFRREQPRLETL 97

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             WR   +VG IA G+ W +   V  G        +   A +L+ L+  A  +     A 
Sbjct: 98  PRWRRAFVVGVIASGIVWGIAGWVYFGASDSTGRLLL--AMILMGLNAGAARSLASVPAS 155

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           +  +    +        +      +LA +  T   F             ++     E ++
Sbjct: 156 YRLYVLTTLGPILLRFATWPDGGWTLALITITYALFLINTMRLHHGDLRRLWQLIFENEE 215

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L+           + ++RA+  N AKS FLA+MSHE+RTP+N I+G  +V+   ++    
Sbjct: 216 LVGT-------LSQAKERADAANRAKSDFLATMSHEIRTPMNGIMGMLQVLHGSSLTV-- 266

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  +     S + L+ L+N+ILD S+IE+G+ E    +  L   + + + +L+ RA
Sbjct: 267 --EQRAQVEIAGNSAESLMRLLNDILDFSKIESGKLEFESVSFDLKAALHDVVSLLRPRA 324

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGR 399
            EK + +   +  +L   V  D   ++QV+LNL  NA+KFT  G    RV V+   T+  
Sbjct: 325 AEKGLALELHLPDNLPDHVIGDSVRLKQVLLNLTGNAIKFTEQGEVALRVRVSQRDTTSA 384

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G G+ +     +   F QG  ++     G GLGL I+Q +  + GG+  +R
Sbjct: 385 RVGFSVRDTGIGMDDATRQKLFQLFSQGDSSMNRRFGGTGLGLAISQRLAEHMGGKIEVR 444

Query: 460 SKLREGVEVIAIL 472
           S   +G E    L
Sbjct: 445 SSPGQGAEFSFEL 457


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 142/323 (43%), Gaps = 20/323 (6%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--------SNVKILSCQA 219
                  ++     +     + +  +         Y  Y + +           +    QA
Sbjct: 724  AAARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQA 783

Query: 220  EKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +K  L A LE     K   +   +     +  KS FLA+MSHE+RTP+N +LG +E++  
Sbjct: 784  QKRQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLE 843

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              +        +E +  IHRSG+ LL ++N+ILD S+IEAGR EL     +L + + + I
Sbjct: 844  MDLTK----EQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVI 899

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             +   RA  K +E+   I+     V  D   +RQV+ NL+ NA+KFT   G V V     
Sbjct: 900  TLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTER-GEVVVEAELE 958

Query: 397  SGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                +     IS++D G GI    +  +   F Q   +      G GLGL I++ ++   
Sbjct: 959  RLDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMM 1018

Query: 453  GGQFLIRSKLREGVEVIAILPNT 475
            GG   + S++ +G      +P  
Sbjct: 1019 GGTIGVESEVGKGSTFTVRIPFR 1041


>gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/271 (36%), Positives = 153/271 (56%), Gaps = 10/271 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+      +  AE+ N +KS FLA+MSHELRTPLN+I+GFS+VI  E+ G L
Sbjct: 109 RNITERKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSL 168

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  K++I ++  +G+HLLN+IN+IL  S+IE G+ EL  S   + + + E  +++   
Sbjct: 169 -NELQKKFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPI 227

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A EKNIE+   ID  + ++ AD     Q+I NL++NA+KFT  G +V +  G  S    +
Sbjct: 228 ASEKNIELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIR-GEISDDFVH 286

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS+KD+G GI+  +   + T F Q   +      G GLGL I +  +  HGG+  + S++
Sbjct: 287 ISVKDSGIGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEV 346

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            +G      +P        PE    S++  C
Sbjct: 347 GKGSTFGFRMP------TYPEST--SSKIHC 369


>gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1028

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 3/263 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     ++    + +  AE  +  KS FLA+MSHELRTPLN+I+GFS+++     G L N
Sbjct: 464 ITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFGEL-N 522

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +Y+ +I  SG+HLL LIN+ILDLS++EAG+ +L  S  ++  +  E    L   AQ
Sbjct: 523 EKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLFPLAQ 582

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K++EI   + P    + AD   + Q++ NL+SNA+KFT  GGRV V     SG     S
Sbjct: 583 AKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSVYCK-KSGSRALFS 641

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+  +   +   F Q   +      G GLGL + + I+  H G   + S+L +
Sbjct: 642 VTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVESELEK 701

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G   +  +P T+     P+ + +
Sbjct: 702 GSTFMFTIPLTK-PPESPKADTK 723


>gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 721

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/450 (22%), Positives = 193/450 (42%), Gaps = 18/450 (4%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92
           FD+  + +   ++     I       +  +      N +   W    + V       G +
Sbjct: 12  FDQFKLVIKNSTVSSFGNIA--VATFLTYLIVDALSNTLVFFWLAYMVLVSVFRTGYG-R 68

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            + +++ +     ++    V  +   L W   +            +    +   I+ S  
Sbjct: 69  YIRTNVSLDTFKYFQKRYFVFILLTALGWGYASFALFVENDTTLQSFLVMSIAGISSSSV 128

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           +  + +  Y  +     V+  L  +   S  V  ++ + +L   L F      H  ++  
Sbjct: 129 SSLSPVKSY-FYSFIIIVITPLFLKFATSYEVYGVAFSLILLLFLIFMIKSAKHYQEAIN 187

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             LS   +   LI E        ++ ++ A+  N  KS FLA+MSHE+RTP+N I+G + 
Sbjct: 188 DSLSLNYQNVGLIKE-------LNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTG 240

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++   ++     +  ++    +  S + LL +IN+ILD S+IEAG+ EL+  ++ L+  +
Sbjct: 241 LLLDTSL----KKEQRDLTLTVKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFL 296

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVH 390
              + M+   AQ K + +   IDP L   +  D   +RQV++NLLSN +KFT  G   + 
Sbjct: 297 DGVMEMVASSAQSKGLNLAYFIDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLT 356

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V+   +        + D G GI+E     +  +F Q   +      G GLGL I++ I++
Sbjct: 357 VSALDSDSNRLQFKVTDTGIGISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILS 416

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             GG   ++S L +G      +P  RV++ 
Sbjct: 417 LLGGHISVKSALGKGACFCFDIP-YRVMDS 445


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/399 (25%), Positives = 188/399 (47%), Gaps = 5/399 (1%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAI-GLCWTL---LTLVEPGTWTPEYLTIYKSATLLIA 148
                +  G+  +WR  +L   +   G+       + +             +K   ++  
Sbjct: 9   FTQDFMPHGQCLLWRPEILWLFVISDGIITASYYSIPVALFYFVRRREDLEFKWMFVMFG 68

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L I +  +        L           + + ++     ++A       +        L 
Sbjct: 69  LFIFSCGSTHFLDIWTLWSPSYRFEGVVKFLTAIASASTAIAIWPLIPKAIALPSPSQLR 128

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +N+++      +  +  EL  +    +  +   E  N AK++FL++MSHELRTPLN I+
Sbjct: 129 NANLEMTREMNGRKKVENELRTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVII 188

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+++++  +  G L NE    YIG+I+ SG+ LL+LIN++LD+S+I+AG  EL    +S+
Sbjct: 189 GYTDLLSEQLPGKL-NEKQLRYIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSI 247

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +++   + M+  +  +K I++   I+P LS V AD +  +Q+++NLL+NA+KFT   GR
Sbjct: 248 DELINGMVSMMSRQFVKKKIKVKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGR 307

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +        G  I ++D G GIAE +I  + + F Q    I     G G+GL + + +
Sbjct: 308 VEICAVSDGDSGVKIEVRDTGIGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRL 367

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +  H G+  + SKL +G      LP  ++      +  E
Sbjct: 368 VELHDGKIGVESKLGKGSTFWFTLPLKKLPREKSSEQKE 406


>gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
 gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
          Length = 1034

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 151/246 (61%), Gaps = 2/246 (0%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +LE A   ++E   +AE  N  KS+FLA+MSHELRTPLN+++GFS+++  E  G L N++
Sbjct: 790  QLEDAVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGEL-NDS 848

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K+YI +I   G+HLL+LIN+ILDLS+IEAG+ EL+   ++L  +  E   ++  +AQ+K
Sbjct: 849  QKKYISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKK 908

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            +I++       +  + AD+  ++Q+I NLLSNA+KFT   G+V ++ G        I++K
Sbjct: 909  SIDLEISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVK 967

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI E ++  +   F Q   +      G GLGLP+ +  +  HGG+ L+ S++ +G 
Sbjct: 968  DTGIGIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGS 1027

Query: 467  EVIAIL 472
                + 
Sbjct: 1028 VFTLLF 1033


>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 763

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 146/249 (58%), Gaps = 2/249 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+ +  + +  AE  N  KS FLA+MSHELRTPLN+I+GFSE++  +T+G +NN
Sbjct: 506 ITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINN 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + YI +I   GQHLL+LINEILD+S++E+G+ EL     ++  ++ + +I+L   A 
Sbjct: 566 -KQERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAI 624

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              IEI   ID  LS + AD+  ++Q++ NLLSNA+KFT   G + +       +   I 
Sbjct: 625 TNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEA-IFDDKLMQIC 683

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKDNG GI +  I  +   F Q   A     QG GLGL + ++ +  HGG   + S++ +
Sbjct: 684 IKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGK 743

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 744 GSAFTFTIP 752


>gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 998

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 149/337 (44%), Gaps = 8/337 (2%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           L +      ++A+         +          V  A +  A      +       +   
Sbjct: 395 LVVSVGLGFVVAILGGLYIGEFIRKLGQRLDPLVKAADAMAAGDLGLRIQDHEPDEIGEL 454

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              F  ++ +L  S   +     E+     ELE +    D  R  AE  N AKS FLA+M
Sbjct: 455 ARAFNQMSANLSDSYAHLEQRVKERTQ---ELEASNQALDLARDAAEAANKAKSTFLANM 511

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNA++G+S+++  +             +  I+ +G+HLL LIN +LDLS+IEA
Sbjct: 512 SHELRTPLNAVIGYSDMLMEDLEESDYLPD----LQKINSAGKHLLELINAVLDLSKIEA 567

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ EL     ++ ++V+    +++    + +     +I  +L  + AD   +RQ +LNLL
Sbjct: 568 GKMELYLEEFNINELVQGVAALVKPLMDKNHNRFALQIPDTLGKMTADATKVRQSLLNLL 627

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA KFT   G V + V     +  +  I D G G++  ++  +   F Q   +      
Sbjct: 628 SNASKFTKA-GTVTLNVWIDDTQRVFFQISDTGIGMSPEQLDKLFQEFTQADNSTTRNYG 686

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++      GG   + S+   G      LP
Sbjct: 687 GTGLGLAISRRFCRMMGGDITVTSEPGVGSVFTIELP 723


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 146/323 (45%), Gaps = 18/323 (5%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV---KILSCQAEKD-----D 223
             +L    I            +   A+  F  I     ++     + L+ + E        
Sbjct: 785  ASLKLTIIPPFWKTLWFKGLLGILAIIMFFLIVRQRTRTVEKQKETLAKEVENRTADLNQ 844

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             I E +  +   ++   R EE N AKS FLASMSHE+RTPLN+ILG +++++   +    
Sbjct: 845  EIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDL---- 900

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            ++   EY+     SG+ LL +IN+ILD S+IEA   +L    + L+      + +    A
Sbjct: 901  SDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATAA 960

Query: 344  QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
              +++E+  +  P +   V  D   +RQ++LN+L+NAVKFT+  G V + V  +      
Sbjct: 961  SSRHVELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSS-GEVSIVVSRSPESNST 1019

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 +I D G GIA  ++ ++   F Q   +      G GLGL I++ +    GG    
Sbjct: 1020 DNITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITA 1079

Query: 459  RSKLREGVEVIAILPNTRVLNFI 481
             S   +G   +  LP  R     
Sbjct: 1080 SSTPGKGSTFMVTLPLPRAPQAT 1102


>gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 736

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 143/255 (56%), Gaps = 2/255 (0%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             +L A  +  +    E R  AEE N  KS FLA+MSHELRTPLN+++GFS+V+E  +  
Sbjct: 484 NLELEATRQKGEESLIEGRIVAEEANRTKSEFLANMSHELRTPLNSVIGFSQVLETNSSN 543

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L+++  K Y+ +I+ SG HLL LIN ILD+S++E+G+ +     ++L +I+ + I++++
Sbjct: 544 HLDDKEQK-YVKNIYESGSHLLELINNILDISKVESGKMDYLPETVNLTEIIDDTIVLVE 602

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A++K++++   I      +  D    ++++ NLLSNA+KFT   G V V     +   
Sbjct: 603 PMAKKKSVDLHLNIKSEDLEIHVDRLKFKEIMYNLLSNAIKFTPEKGTVSVNSKCVNKNF 662

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           Q IS+ D G G+ + +  ++   F Q       +  G GLGL + +  +  HGG+  + S
Sbjct: 663 Q-ISVSDTGIGVPKEKFESIFDPFKQVDSTSSRSFGGTGLGLALVRKYVEMHGGEIWVES 721

Query: 461 KLREGVEVIAILPNT 475
           ++  G      LP  
Sbjct: 722 EVGVGSTFTFTLPFA 736


>gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 937

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%)

Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
               LL+ + I+ L       +A  L      +A +  A+ S  +       +  +    
Sbjct: 329 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 384

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255
            T +     +  V +       +  + E            ++ R++AE  N AKS FLA+
Sbjct: 385 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 444

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLNAI+G+SE++  E    +  E        I+ +G+HLL LIN ILDLS+IE
Sbjct: 445 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 504

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGR EL   + SL +++     +++   ++   ++       +  + AD   +RQ +LNL
Sbjct: 505 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 564

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA KFT   G + + V     +     + D+G G++  +I  +  +F Q   +     
Sbjct: 565 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 622

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
            G GLGL I++  +   GG+  + S L EG      LP   +    IP  +   T 
Sbjct: 623 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 678


>gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 890

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           + T    F Y+   + KS +++      +  L+ E +   +L  +  K+ +E +  KS F
Sbjct: 245 IGTLTETFNYMVNEVAKSKMELEKELTRRAKLLEERDELVALLQKANKQLKELDTLKSAF 304

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A+MSHELRTP+NAI+G+++++  E  GPLN++  K  +  +  + +HLL LIN++LD+S
Sbjct: 305 IANMSHELRTPMNAIIGYTDLLLDEVDGPLNDD-QKTSLKKVAANARHLLQLINDVLDIS 363

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IE+G+ EL    I L +++   ++  +    +K +     I+     ++ DE   +Q++
Sbjct: 364 KIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNIESGAEKLYVDEDKTKQIL 423

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSF 424
           +NL+SNAVKFT  GG + +    +              IS+ D G GI   ++  +   F
Sbjct: 424 INLISNAVKFTHQGG-ITIKAKVSERGKAKDGSPQFIEISVSDTGIGIKREDLDKIFDKF 482

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q  ++     +G GLGL I + ++A H G     S++ +G     +LP  +
Sbjct: 483 AQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGSTFYVLLPFKK 534


>gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
 gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
          Length = 1108

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 151/279 (54%), Gaps = 5/279 (1%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMS 257
             ++     +     L      D L    +  +    +  +   +AE  N +KS FLA+MS
Sbjct: 813  AWLAKTFGEHAAIALRNSRNFDVLKGTNKRLEDTVLKANELAAQAEYANKSKSEFLANMS 872

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN+I+GFS+++  ET G L  +  ++Y  +I++SG+HLL LINEILDLS+IEAG
Sbjct: 873  HELRTPLNSIIGFSDILNGETFGKLT-QKQEKYTANINKSGKHLLYLINEILDLSKIEAG 931

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            + E       L  +  +   ++ L+AQ+K+I++       +  + AD+  ++Q+I NLLS
Sbjct: 932  KMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-EINADKSKIKQIIFNLLS 990

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            NA+KFT   GRV ++          I++KD G GI E +  T+   F Q   +      G
Sbjct: 991  NAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETIFDPFMQVDASTSRKYGG 1050

Query: 438  VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             GLGL + +  +  HGG+  + S++ +G   +  +P  +
Sbjct: 1051 TGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQ 1089


>gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 977

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%)

Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
               LL+ + I+ L       +A  L      +A +  A+ S  +       +  +    
Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255
            T +     +  V +       +  + E            ++ R++AE  N AKS FLA+
Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLNAI+G+SE++  E    +  E        I+ +G+HLL LIN ILDLS+IE
Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGR EL   + SL +++     +++   ++   ++       +  + AD   +RQ +LNL
Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA KFT   G + + V     +     + D+G G++  +I  +  +F Q   +     
Sbjct: 605 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
            G GLGL I++  +   GG+  + S L EG      LP   +    IP  +   T 
Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718


>gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 793

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 1/265 (0%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++    +L         I E   A+    + +  AEE +  KS F+ +MSHELRTPLN++
Sbjct: 516 YRGPDGLLIGILGIGRDITERNRAEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSV 575

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+V+  E  G L N++ K+YI +I +SG+HLL LIN+ILDLS+IE G+ EL      
Sbjct: 576 IGFSDVLLKEIKGEL-NDSQKKYISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFD 634

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L  I+ E   +   +A +K+I +   +   +  +  D+  ++QVI NLL+NA+KFT   G
Sbjct: 635 LNSILSEVESIFSPQAAKKDINLQFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNG 694

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V           +S+ D G GI E ++  V   F Q   +      G G+GL +A+ 
Sbjct: 695 AISVIAKENDDNIIEVSVSDTGIGIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKK 754

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
            +  H G+F + S++ +G      +
Sbjct: 755 FVQMHDGKFCVESEVYKGSTFTFTI 779


>gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
 gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
          Length = 977

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%)

Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
               LL+ + I+ L       +A  L      +A +  A+ S  +       +  +    
Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255
            T +     +  V +       +  + E            ++ R++AE  N AKS FLA+
Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLNAI+G+SE++  E    +  E        I+ +G+HLL LIN ILDLS+IE
Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGR EL   + SL +++     +++   ++   ++       +  + AD   +RQ +LNL
Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA KFT   G + + V     +     + D+G G++  +I  +  +F Q   +     
Sbjct: 605 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
            G GLGL I++  +   GG+  + S L EG      LP   +    IP  +   T 
Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718


>gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 767

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/467 (24%), Positives = 205/467 (43%), Gaps = 12/467 (2%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ--NPIFPMW 75
                              I +L      R  P + +  L V      + +       + 
Sbjct: 285 EATIRTAFPAQPASIGASGIDSLVSVRRVRDYPFVIVATLPVDAALREWRRNTAVWTGIG 344

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
           +++T+A+      + ++    +     +      +       G+  ++L  V        
Sbjct: 345 AVMTIAIALLTAFIVRQHARREQDQARLARASRRIR------GILDSMLDAVVTFDSNGR 398

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM--- 192
            +T  ++A L+  +    +    +   +  +         T      H   +S       
Sbjct: 399 IITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLR 458

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L         +   L                 +   +  ++    ++ +AE  N AK+ F
Sbjct: 459 LDGGPCTPAALPAALGGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEF 518

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAI+GF+EV+  E  G + NE  K  I DIH SG+HLL+++N +LD+S
Sbjct: 519 LANMSHELRTPLNAIIGFAEVLSSEFFGTV-NERQKSCITDIHDSGRHLLDIVNAVLDMS 577

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           ++E G+++LSE ++   + + +C++M++ RA    I I  ++  +++ +W D +  +QVI
Sbjct: 578 KLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVI 637

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNLLSNAVKFT  GG++ V+ G  +  G  +++ D G GI    +  +   F Q      
Sbjct: 638 LNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTAN 697

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              +G GLGL I+++ +  HGG    +S L  G  +   LP  RV++
Sbjct: 698 RRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLPACRVID 744


>gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
 gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
          Length = 854

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +L TA      I   +   ++       E    +++ + A+    + +  AE  N + S 
Sbjct: 225 ILLTATGKTLPILRSVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSE 284

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPL AI+GFSE++   + G  + E  K+++G+I  SG+HLL+LIN ILDL
Sbjct: 285 FLATMSHELRTPLTAIIGFSELMLGGSTGEFD-ELNKKFLGNISTSGKHLLSLINSILDL 343

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IEAG+ EL     SL DI      +L   A +KNI +   ++P    V+AD    +Q+
Sbjct: 344 SKIEAGKMELQSDYFSLQDIFSNTKNILSPLALKKNISMDFNVEPGF-FVYADRTRFKQI 402

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+SNAVKFT  GG V V +G  S +G  +S+ D G GI++ EI  +   F Q    +
Sbjct: 403 MYNLVSNAVKFTQKGGSVEV-LGIVSEKGVRVSVSDTGIGISKDEIKQLFKPFKQIDSTL 461

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
               +G GLGL +++  +  HGG+  + S+  +G      +P   + +      HE+ +
Sbjct: 462 SRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKGSTFTFEVPVKTLKSGEIFRAHETAE 520


>gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 646

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/377 (27%), Positives = 169/377 (44%), Gaps = 19/377 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA--LST 176
           L W LL  +       E +       L + L++  LS   L         P+     ++ 
Sbjct: 273 LGWKLLITIPYHEIEKEIMASMMYMLLFVFLALILLSITTLIILDKTIIRPLSYLTDITK 332

Query: 177 QAIMSMHVLDISLA-------GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               + ++              +  +       I     + N       + +D L   + 
Sbjct: 333 NITETGNLNQKIELHTKGEVQELAKSFERMIGKIKEEEEQKNKAFNELSSYRDHLEDLVR 392

Query: 230 VAKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +         R RAEE +  KS FLA+MSHELRTPLN+I+GF+ +I     GPL
Sbjct: 393 ERTQQLEAANTDLITERNRAEEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPL 452

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N E  K+ +G +  S +HLL LIN++LD+S+IEAG   +S   +++   +      L+  
Sbjct: 453 NKEQEKQ-LGMVQDSARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKS 511

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++K + +   I P    +  D++ + Q+++NL++NA+KFT   G V V           
Sbjct: 512 AEDKGLSLHVDISPDTGFIIGDQRRIEQILINLINNAIKFTER-GYVCVKSSLREKN-VC 569

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS+ D G GI+E E+  +   F Q         +G GLGL I + ++  HGG  ++ S+ 
Sbjct: 570 ISVSDTGIGISEEEMKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEP 629

Query: 463 REGVEVIAILPNTRVLN 479
            +G E   ILP    L+
Sbjct: 630 GKGSEFTVILPAGEELS 646


>gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 1005

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              + ++ + + ++E +    +  RK+AEE N+AKS FLA+MSHE+RTPLN ++G + ++ 
Sbjct: 748  EQELKQLEFLKQIEQSNQDLEIARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLL 807

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +    +++ ++Y   I  SG+ LL +IN+ILD S+IEAG   L +   +L +IV E 
Sbjct: 808  NTPL----DKSQEKYANRIDLSGKVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEV 863

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
              ++Q +A+EK + +           +  D   +RQVI+NL SNA+KFT   G V + V 
Sbjct: 864  GELMQPKAEEKGLNLEISYAHDTPKHLIGDPTRIRQVIMNLTSNAIKFTQE-GSVAIKVS 922

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    + + D G GI + +   +   F Q  ++      G GLGL I + ++    G
Sbjct: 923  NPKKAFIRVEVTDTGIGIPQEKKMHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEG 982

Query: 455  QFLIRSKLREGVEVIAILPNT 475
            +    S   +G      +P  
Sbjct: 983  KIGCESIENKGSTFWFEIPLQ 1003


>gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to
           histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 679

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 184/449 (40%), Gaps = 16/449 (3%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           +        +     +  R+        +L   +    + N + P+ ++    +      
Sbjct: 245 AAASAGVSALIFIYATRKRIEAGSLFTAILAGLVAITASSNMVTPVSAVAIGLITGILAI 304

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           + +  +   +KI +         VG +   LC  +    +          +++     + 
Sbjct: 305 IAEGFIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFA-QKSYLLAENGSRMHQLGIQALG 363

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           + ++   +F L    FL    V     T       +       + +              
Sbjct: 364 VIVAFSWSFGLGMLFFLCLKKVKRLRVTPEEEKRGLNVAEYEDVASWLDF---------- 413

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
              ++I   Q     L   ++   +         E+ N  KS FL +MSHELRTPLNAI+
Sbjct: 414 ---IRITRLQDINTILEKRVQEKTADLQMANVALEKANRLKSEFLTTMSHELRTPLNAII 470

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GF+EV+  E  G L+ +  KEY+ DIH SG HLL++IN ILDLS+IE G+  L      +
Sbjct: 471 GFAEVLRDEIAGSLSKD-QKEYVTDIHSSGHHLLDMINNILDLSKIETGKMHLQYEEFCI 529

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            D + + + ++   A  K I +   I  +   + AD+   RQ++ NLLSNAVKFT   G+
Sbjct: 530 EDAINDTLTIINASANNKGISVHTNIQDNTPLLSADKTKFRQILYNLLSNAVKFTPENGK 589

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + V +         I D G GI   +   +  +F Q   ++    +G GLGL + + +
Sbjct: 590 ITINV-FQKDNSLQFEIVDTGIGIKPEDKEKLFEAFHQADASLTREYEGTGLGLHLTKRL 648

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +  HGG+    S   +G     ILP   V
Sbjct: 649 VELHGGKIWAESTFGKGSTFFFILPINPV 677


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
           I     W  + L +        + + +S TLL+ L ++ L   M    V + FF +V + 
Sbjct: 202 ILSIFGWGQVYLTDSVDIAGVKVFVLQSETLLVQL-VNRLIPIMFLIVVGVVFFSLVFSW 260

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILSCQAEKDDLIAELEV 230
           S    +S  +  I L+G  +     F  +       L K ++++       +  + +L  
Sbjct: 261 SLNRYISTALDSI-LSGFTSIRDGSFERVKFKSNDELGKISMELNKTMEFIEMTLEKLRK 319

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           +  L  +    A + +  KS FLA+MSHE+RTP+NAILGF+E++  E      NE  +++
Sbjct: 320 SNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSE----ETNEEKRKH 375

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+RSG+HLL+LIN++LDLS+IE+G+ ++ E   S  ++++E +      A  K + +
Sbjct: 376 LVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHL 435

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +D ++   V  D   ++Q++ NL+SN +KFT+  G + +   +  G+  YI + D G
Sbjct: 436 AYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQ-GYITIQANYKEGKITYI-VNDTG 493

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E ++  +   F Q    +     G+GLGL I + ++    G+  I S + +G +V+
Sbjct: 494 IGIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVV 553

Query: 470 AILPNT 475
             LP  
Sbjct: 554 VSLPTK 559


>gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 153/287 (53%), Gaps = 12/287 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +    + ++   EL++      + R +A E + AKS FL++MSHE+RTP+N+I+G +E++
Sbjct: 369 VEALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELL 428

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +    +E  ++YI     +G+ LL LIN+ILDLS+IEAGR EL     +L++ V  
Sbjct: 429 QETEL----SEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVEN 484

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              M+ LRA +K +E+  +I   +   V  D + +RQ+++NLL NAVKFT   G+V + +
Sbjct: 485 IAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEK-GQVFLDL 543

Query: 394 GWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              S       +    +IKD G GI + +   +  SF Q   +      G GLGL I++ 
Sbjct: 544 RIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQ 603

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  ++S  + G      LP   V N       ++  ++ Y
Sbjct: 604 LVELMGGKIWLKSTPQLGSTFYFSLPLKIVENNFKSQKSQTRNFEQY 650


>gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 851

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 88/251 (35%), Positives = 143/251 (56%), Gaps = 2/251 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + + A+    E +  AE  N  K+ FLA++SHELRTPLN+I+GFSE++  E  G L N
Sbjct: 603 VTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGEL-N 661

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y+ ++  SG HLL+LIN+ILD+S+IEAG+ + +   + +ID+V +    +  +A 
Sbjct: 662 EYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQAL 721

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            KNIE+    D  L +++ADE  +++ + NL++NA+KFT   G+V + V          +
Sbjct: 722 NKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKL-DGNIRFA 780

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI E +   +   F Q   +      G GLGL + +  +  H G+  I S++ +
Sbjct: 781 VKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNK 840

Query: 465 GVEVIAILPNT 475
           G  +   +P  
Sbjct: 841 GTAIYFTIPVK 851


>gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 977

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 12/356 (3%)

Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
               LL+ + I+ L       +A  L      +A +  A+ S  +       +  +    
Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255
            T +     +  V +       +  + E            ++ R++AE  N AKS FLA+
Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLNAI+G+SE++  E    +  E        I+ +G+HLL LIN ILDLS+IE
Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGR EL   + SL +++     +++   ++   ++       +  + AD   +RQ +LNL
Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA KFT  G       G   G      + D+G G++  +I  +  +F Q   +     
Sbjct: 605 LSNASKFTHQGTDS--AAGCCQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
            G GLGL I++  +   GG+  + S L EG      LP   +    IP  +   T 
Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718


>gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 761

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/260 (37%), Positives = 143/260 (55%), Gaps = 2/260 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      +  AE  N  KS FL +MSHEL+TPLN+I+GFS++++ E  GPL
Sbjct: 498 RDITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPL 557

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE    Y+  I  SG++LL +IN+ILDLS+ E+G  +L+    S+ + + + I ++  +
Sbjct: 558 -NEKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQ 616

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           AQEKNI +  + +     + ADE   RQ++ NLLSNA+KFT  GG + VT+    G    
Sbjct: 617 AQEKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQ-EGLLVT 675

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I +KD G GI E     +   F Q   ++    +G GLGL + +  +  HGG   + SK+
Sbjct: 676 IEVKDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESKI 735

Query: 463 REGVEVIAILPNTRVLNFIP 482
            EG      LP TR     P
Sbjct: 736 GEGSSFRFELPVTRKRTVEP 755


>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
           Nitrospira defluvii]
          Length = 578

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/429 (23%), Positives = 170/429 (39%), Gaps = 17/429 (3%)

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV---WRIWLLVGQIAIGLCWTLL 124
                  W+LI      A  +        +    +       R  +++      +  T  
Sbjct: 147 GQTHPWTWALIHGGFILAQCAALLYFWRVNELAQDEVRESEARTRMIIETALDAVITTDA 206

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
           T    G  T   L      T  I   ++   +   P +      P         ++   +
Sbjct: 207 TGTINGWNTQAELMFDVPRTEAIGKPLTTYVSAACPASGSTPITPYAG------LVPGAI 260

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L+     +  T       +   +                 I+E +  +      ++ AE 
Sbjct: 261 LNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIFVQDISERKQQEERLCRAKEAAEA 320

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +LAKS+FLA+MSHE+RTP+N +LG +E++    +    N+T + Y   +H SG +LL++
Sbjct: 321 ASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPL----NDTQRRYAHTVHNSGTNLLHI 376

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363
           IN+ILD S+IEAGR  L      L  ++ E I +   +A++K + +   + P +  +   
Sbjct: 377 INDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALSVTMTPDIPDMAHG 436

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVL 421
           D   +RQ++ NL+ NA+KFT   G V V V    G      I + D G GI       + 
Sbjct: 437 DPHRLRQILTNLVGNALKFTET-GTVAVFVRPDEGRPGRVRIEVTDTGIGIPLQAQEKIF 495

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            SF Q   ++     G GLGL I + ++   GGQ  + S   +G      +   R  +  
Sbjct: 496 DSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGTTFWFTISVDRSASPE 555

Query: 482 PEDNHESTQ 490
            E     + 
Sbjct: 556 TESQPHRSD 564


>gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 395

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/269 (35%), Positives = 149/269 (55%), Gaps = 4/269 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           K L  Q E+   + E +V +  SD  +     E+    KS FLA+MSHELRTPLNAI+GF
Sbjct: 125 KRLHDQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGF 184

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +EV++   +GP+N+E  +EY+ DI+ SG+HLLN+IN +LD+S+IEAG+ EL    I + +
Sbjct: 185 AEVLKDGLVGPINDE-QREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKE 243

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            + + +  +   A +KNI I   I   + +   D+  ++Q++ NLLSNA+KFT   G V 
Sbjct: 244 TIDDVLNTVSGIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVC 303

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +            +I D G GI + +I  +  +F Q   ++    +G GL L + + ++ 
Sbjct: 304 IDTTL-KDLYVQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVE 362

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            HGG+  + S   +G     ILP      
Sbjct: 363 LHGGEIWVESFYGKGSTFTFILPLRPPNQ 391


>gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 970

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 161/391 (41%), Gaps = 11/391 (2%)

Query: 103 VYVWRIWLLVGQIAIGLCW---TLLTLVEPGTWTPEYLTIYKSATLLIALSISA-LSNFM 158
                   LV     G  +    L+ ++       +   I  +A LL  +   + L++ +
Sbjct: 331 PQRAIARDLVRNNIAGSLFLFLGLILMLAIARSLTQREFIQPAALLLQHIERESELTDPV 390

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P     S  P         I      + +L   L       T    +L  +N ++    
Sbjct: 391 APLQQIPSSIPAGWRSWFTTISQTFSENRTLLWALQDKAESLTVAKKNLQSANEQLEEA- 449

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                L  ++    +  +  R+ AE  N AKS FLA+MSHELRTP+NAI+G+SE++  E 
Sbjct: 450 --NRTLEQKVAQRTAELEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEA 507

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E   + +  I  +G+HLL+LIN+ILDLS+IEAGR +L     SL  ++   I  
Sbjct: 508 ADLEPEEFVPD-LQKIQAAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIAT 566

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +Q   ++ +  +  K    L S+ AD   +RQ + NLLSNA KFT   G + +TV     
Sbjct: 567 IQPLLEKNSNTLEVKAPTDLGSMHADLTKVRQSLFNLLSNACKFTDR-GTITLTVTRQ-D 624

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G G+   ++  +   F Q   +      G GLGL I        GG   +
Sbjct: 625 DAINFKVSDTGIGMTPDQMARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITL 684

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            S    G      LP   V    P       
Sbjct: 685 ESTPGVGTTFTVSLPLE-VKELKPSAEEPKP 714


>gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 26/334 (7%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           + +      + ++ V    +  ++ +A      I   + +     L+   +  DL   ++
Sbjct: 61  MPLMDGLTLLDNLRVFYPDIKAVIVSAYDDLDKIRSAMNRGAFDFLTKPIDFQDLEITIQ 120

Query: 230 VA---------KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                           + +  AE  N AKS FLA+MSHELRTPLNAI+G+SE++  +   
Sbjct: 121 KTLENVQQLKENKRLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHS 180

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + +   + I +IH SG+HLL +IN+ILDLS+IEAG+ ++   +++++ ++   +  +Q
Sbjct: 181 LGSKDFIHD-INNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQ 239

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++ N  +    + +   + AD   MRQVILNLLSNA KFT   G++ + V   +   
Sbjct: 240 PLIEQNNNILEIICEDNQEPIMADPNKMRQVILNLLSNAAKFT-ENGKIILKVKVANNDE 298

Query: 401 QYIS---------------IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            +IS               + D G GI+E +I ++   F Q   +      G GLGL I+
Sbjct: 299 DFISQNRDCNFTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAIS 358

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +      GG   + S++ +G       P  ++++
Sbjct: 359 RHFCKMMGGDITVVSEVNKGSIFTVKFPVPQIIS 392


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 140/273 (51%), Gaps = 16/273 (5%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL+ ++    E R +A+E   AKS FLA+MSHE+RTP+N ++G ++++    + P   
Sbjct: 900  ITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTELRP--- 956

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +     I  SG+ LL LIN+ILD S+IEAGR EL     +L  ++ +   ++ +RA 
Sbjct: 957  -EQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRAD 1015

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
            EK +E+    DP +   V  D   +RQ++ NL+ NA+KFT   G V V V  +       
Sbjct: 1016 EKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQ-GEVVVRVQRSEVSADDV 1074

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                +++D G GI E +I  +   F Q   +      G GLGL I++ +    GG+  ++
Sbjct: 1075 LLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQ 1134

Query: 460  SKLREGVEVIA----ILPNTR--VLNFIPEDNH 486
            S+   G +        L   +   L  +P+D H
Sbjct: 1135 SEYGRGCKFWFTARLTLQKKQEEPLPALPQDLH 1167


>gi|298247031|ref|ZP_06970836.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549690|gb|EFH83556.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 484

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 171/485 (35%), Gaps = 26/485 (5%)

Query: 17  SPTGDHLGLEYPSKMDF---DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP 73
               + L      +         ++      +     ++    L V  +  W     +  
Sbjct: 1   MQAQETLSSSNRGQAKIWSTAAYLLLSFPSGILYFVVLVIFLGLSVGLLIVWIGIPMLIL 60

Query: 74  M----WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW---TLLTL 126
                W       Y A   L   +    +       W    L   +   + W     L L
Sbjct: 61  GLYLSWQFAIFERYLAMHWLNCYISPLALSRQPRQNWL-QYLRAHLTNKMTWKTLAFLLL 119

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM---- 182
             P         I     +L+   I+ +  F+    ++L        L  +         
Sbjct: 120 KFPLGILSFVFAIQVPILMLVLALITFILGFVCTPILYLILVARNAPLVIRWPGRRPIYL 179

Query: 183 ----HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                ++     G     L  +  +        +          DL       +   ++ 
Sbjct: 180 NGMKDLIRYVFTGFGLVLLPRYILLGMAWIWQQLGRALLGMNNQDLRVAQAEEQVRREQA 239

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL----ETMGPLNNETYKEYIGDI 294
           +  AE   L++ + + ++SHELRTP+ +I    EV+      +    L  +    Y+G  
Sbjct: 240 K--AERAELSRQQLIVNVSHELRTPVASIRAHLEVLLKACAHDDGLVLQPQELSNYLGIA 297

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-IEIFQK 353
           HR    L +L+ ++L LSR EA +  L+ +++   +++ E    L   A+++  I +   
Sbjct: 298 HRETVRLSSLVEDLLSLSRTEADKLRLNMASVPPGEVIEEVYQALLPLARKERMITLVHS 357

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +   L  V AD + + QV++NL+ NA+ +T  GG + ++          IS+ D G GI 
Sbjct: 358 LPERLPRVQADHQRLTQVLMNLVRNAITYTPNGGIISISTRQEHSDYLVISVADTGMGIP 417

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +   F +   +   +  G GLGL I + ++   GG+  + S+  EG      L 
Sbjct: 418 ADQLAQIFERFYRTDASRSRSSGGFGLGLSIVKDLVDAMGGKITVESQEGEGSCFHIHLR 477

Query: 474 NTRVL 478
             + +
Sbjct: 478 LAQAI 482


>gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 502

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 192/441 (43%), Gaps = 14/441 (3%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           +   ++    +F L  A    +         W++         L++      S +     
Sbjct: 70  TRLSIALGAVIFALY-AVFDPYIIPEVATEAWAIRIGIACPLLLAIV---AISYLPGFSY 125

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
               +  L   I       L  +            +Y +  L+I   ++ L      Y++
Sbjct: 126 RHQALLSLAMAIP-----ALAVVAMIAIAAAPGNYLYYAGVLIILSYVNCLWRLRYYYSI 180

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +S             ++    ++ +   +         +  +  +    +     + + 
Sbjct: 181 LMSVLACAAYEYAVLFVNPIPTNMLINNNVFLIFGVGVSMFVNYVQ-EYHLRRSFIDNEK 239

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L +E   ++ L      R+E  N AK+ FLA MSHELRTPLNAI+GFSE+I  +  GP+ 
Sbjct: 240 LRSEQRRSERLLS----RSEAANRAKNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVG 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
              Y +Y  DI  SG HLL++IN+ILD+S+ EAG+ +L E  I  ++ +   + M + RA
Sbjct: 296 QPKYVDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRA 355

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            E  +E+  ++   +  + AD +   QV +NL SNA+KFT   G V V +G        +
Sbjct: 356 SELGVELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVL 415

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D G GI   +   +   F Q   A+   +QG GLGLP+ + IM  HGG   + S + 
Sbjct: 416 AVRDTGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVD 475

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           EG    A  P +R +   P D
Sbjct: 476 EGTIARATFPRSRFVAAQPND 496


>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 946

 Score =  312 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 104/445 (23%), Positives = 181/445 (40%), Gaps = 24/445 (5%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
                 + ++L           P       +  A  +A    G   +           W 
Sbjct: 85  TFFSALIAIVLCGVGFAIVLGRPGPLAGGALIGAAISAMHFTGMTAVRIPADPV----WD 140

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
           +  +V  + IG+  +   +            +  S    IA+  +  +       V    
Sbjct: 141 MNYVVAAVVIGVLTSAGAMHAAMRVPALGGILVGSLLFTIAICATHFTAMTALTYVPDPT 200

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFT--YITYHLFKSNVKILSCQAEKDDLI 225
             V   ++   ++++ +  ++   +    +      Y+         ++          I
Sbjct: 201 IVVTDVVAEPGMIAIAIATVTFLIIALGLVGALVDNYLAQRASGEAERMRVY-------I 253

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           AELE  K      + +AE  N AKS FLA+MSHE+RTP+N +LG +E++    +    N 
Sbjct: 254 AELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTAL----NA 309

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +++   +  SG+ LL ++N+ILD+S++EAGR EL      L++ V   I ++  RA E
Sbjct: 310 EQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAAE 369

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG----- 398
           K I++   I+P+   ++  D   +RQV+LNL+ NA+KFT  GG  V V+V          
Sbjct: 370 KQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVEDPQTKA 429

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI E     +   F Q   ++     G GLGL I + I+    G   +
Sbjct: 430 SHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGV 489

Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483
            S++  G      L   R    +P+
Sbjct: 490 NSRVGAGSTFWFQLSLVRSAAHLPD 514


>gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 996

 Score =  312 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 3/268 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L + ++K  S        I   + A+     ++  AE  + AKS  LA++SHELRTPL 
Sbjct: 730 KLTRIDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLT 789

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I+GFS+++    +G L NE+ K Y+  +HRSG+HLL+LI +ILDLS+IE+G++EL    
Sbjct: 790 SIIGFSDILLKGKLGDL-NESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEK 848

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +S+  ++++    +   A +K +EI   I+ S+  ++AD+  +RQ++ NL+ NAVKFT  
Sbjct: 849 VSIPQLMKDLKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQ 908

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V V + W        S+ D G GI   +   +  SF Q          G GLGL + 
Sbjct: 909 -GSVTVKLDWNDNDML-FSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALV 966

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++  HGG+  + S+ REG     I+P
Sbjct: 967 ERLVEMHGGKIWVESEEREGSRFSFIIP 994


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 882

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 11/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E + A+    +    AE  N AKS FL++MSHE+RTP+N ++G ++++EL  +    N
Sbjct: 480 VTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTEL----N 535

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +   G++LL LIN+ILD+S+IEAG   L     SL+  +R+ ++     A+
Sbjct: 536 AEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAR 595

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK + +  ++ P +  +V  D+   +Q++LNLL NAVKFT  GG V +TV          
Sbjct: 596 EKALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGG-VTITVTLLEQPVAPP 654

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GIA   +  +   F Q   +      G GLGL I++ +    GG   I 
Sbjct: 655 LFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIE 714

Query: 460 SKLREGVEVIAILPNTRVLN-FIPEDNH 486
           S    G      LP +   +   P ++ 
Sbjct: 715 STPGVGSCFTLTLPLSPAPDGSKPVESP 742


>gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
 gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
          Length = 815

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+E +  KS F+A++SHEL+TPL AI G+SE++    + P   E  + Y   I++  + L
Sbjct: 461 AKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP---EKVRNYYQIIYKESERL 517

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LIN++L++SRIE+G+ EL +  + +  +++E     Q +  +    I  +     + +
Sbjct: 518 TQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKH--TIVLQFPEYPTFI 575

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QV  NLL NA+K++  GG + V V         I ++D G GI    +P + 
Sbjct: 576 LGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMED-IVIEVQDQGIGIPPEHLPHIF 634

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   +++ +  G GLGL I +SI+  HGG+  + SK+ EG      LP  
Sbjct: 635 DRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPRR 688


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 11/312 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                +    +  +    +       T   Y L  + +  L  Q + + L   +E   + 
Sbjct: 139 GMFYGLRQGSMHRTSVATMELLSIILTSTAYALESAELYRLLSQ-DNERLQKLVEKRTAE 197

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +  R +AE  N AKS+FLA+MSHELRTPL+ I+G  +++    +        +EY    
Sbjct: 198 LERARDQAEGANRAKSQFLANMSHELRTPLSGIIGMVDLLLDTRLDN----EQQEYARLA 253

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   LL LIN+ILD S+IEAG+ E+ E+  SL  +      +  L AQ+K I +   +
Sbjct: 254 SDSAHALLALINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYV 313

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409
           DP L   V  D   +RQV+ NLLSNA+KFT   G V + V      GQ       + D G
Sbjct: 314 DPQLPAYVRGDALRLRQVLANLLSNALKFTEK-GSVQLQVKILGDGGQAPLIRFEVCDTG 372

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+       +  SF Q   +      G GLGL I ++++   GG+  I S+L +G    
Sbjct: 373 IGVDAEVAERLFQSFTQADSSTTRKYGGTGLGLAICRNLVELMGGEIGIESRLGQGSTFW 432

Query: 470 AILPNTRVLNFI 481
             LP    LN  
Sbjct: 433 FTLPLLPALNHA 444


>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
 gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
          Length = 559

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           ++++N ++     +      ELE       + ++ AE    AK+ FLA MSHE+RTP+N 
Sbjct: 127 MYQTNNRLKIQSMQLHQKTLELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNG 186

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G  +++    +     E  +EY   I  S   L+N+IN+ILD S++E+G+ EL E   
Sbjct: 187 VIGMIDLLMDSEL----QEEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L   V+E   +    A +KN+++   I+  +   V+ D   +RQV++NL+SNAVKFT  
Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLQLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302

Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG  + V++            ++KD G GI+  +I  +   F Q   ++     G GLGL
Sbjct: 303 GGVYLVVSLTQVEEDRLTLEFTVKDTGIGISSEKIDRLFKPFSQLDSSMTRKYGGTGLGL 362

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I +S++   GG   + SK  +G   +  
Sbjct: 363 AICRSLVQMMGGDITVESKENKGATFVFT 391


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 11/270 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++ ++ AEE +  KS FLA+MSHE+RTPLN ILGF++++  ET     +   ++++
Sbjct: 366 QQELEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDET----EDAKKRDHL 421

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG++LL LIN+ILD S+IEA + +L         +++    M  L A+ K ++  
Sbjct: 422 HLIKDSGKNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFT 481

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            + D  L  +  D+  +RQ+++NLLSNA+KFT + G V +   + +      S+ D G G
Sbjct: 482 VEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEV-GSVSLRAHYENTGIMRFSVSDTGIG 540

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E     +   F Q   + K    G GLGL I + ++   GG   + SK   G      
Sbjct: 541 IPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIE 600

Query: 472 LPN------TRVLNFIPEDNHESTQYKCYA 495
           LP       + +    P     S   + ++
Sbjct: 601 LPLPTTTRTSAIHGPSPRQASVSGDKRVHS 630


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 10/285 (3%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
           ++  ++         +     K+       +AE +    +L           +R +E + 
Sbjct: 197 TVIAIILGGSFGLIVMFSRWNKT------LEAEVESKTGDLIRTNKELALANERLKELDR 250

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS F++ +SHEL+TPL A+   ++V+E      +  ET +E +  I R+     NL+N+
Sbjct: 251 LKSDFVSMVSHELKTPLTAMRTSAQVLE---AAGIATETKREMLDIILRNIDRQTNLVND 307

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LDLSRIE+GR +L   ++SL  ++ + I  ++  A EK I++  K+   LSSV  D + 
Sbjct: 308 LLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKGIKLNVKLPEGLSSVKGDREK 367

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV++NLL+NA+KFT   G + +     +G+   + + D G GI   ++  V   F Q 
Sbjct: 368 LTQVVINLLNNAIKFTPRSGEISIKAIELNGQ-VEVKVSDTGIGIPPEDLEKVFDKFYQV 426

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +     G GLGL I + I+  H G     S+L +G   +  L
Sbjct: 427 DSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGSTFVFTL 471


>gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 687

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 170/423 (40%), Gaps = 6/423 (1%)

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
             +P      L         L     +    +K           +     +      L  
Sbjct: 16  LDDPWLTALLLAYPVGDLIVLFGVVHIA---LKSDNWRSALPMHMFSLGLLAFLAGDLGY 72

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                       ++ S+  ++A +I A++  +   +            +T A +++    
Sbjct: 73  SSMMMSETYQEGMWPSSLWIVAYTIFAVAAQLQLTSQAAPARQSATDGATTASLNLLPYL 132

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             + G            T  L    +  L+                      R  AE  +
Sbjct: 133 GIVVGFGLLLAVTIQNWTRPLGDLIIGALALTVIVMVRQVVAMRENVRLATERAAAEHAS 192

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN+I+ F+ +I     GP+  E   +Y+  + +SG+HLL LIN
Sbjct: 193 QIKSEFLANMSHELRTPLNSIINFTRIISTGARGPVTPEQI-DYLNRVRQSGEHLLGLIN 251

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +ILDLS+IEAGR EL   +  + D+++  +       +EK IE+  +I P L  V+AD  
Sbjct: 252 DILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIELRSEIAPHLPPVYADRT 311

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQV+LNLLSNA KFT   G + V           I + D G GIA   +  +  +F Q
Sbjct: 312 RVRQVLLNLLSNAAKFTDA-GTITVHAE-GCNGEIVIHVSDTGIGIAPEHLEKIFEAFRQ 369

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              A     +G GLGL I + ++  HGG+  + S +  G      LP T           
Sbjct: 370 LDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFSFSLPLTAATQSASSPES 429

Query: 487 EST 489
             T
Sbjct: 430 SQT 432


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 9/263 (3%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              ++ R +AE  N AKS FLA+MSHE+RTP+NA+LGF+ ++    +    NE  ++++  
Sbjct: 809  ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPL----NEQQRDFLQT 864

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            +H++G+ LL +IN+ILD S+IE+G+  L +    + + V + + +L  +AQEK +E+   
Sbjct: 865  LHQAGEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYT 924

Query: 354  IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNG 409
              P     +  D   +RQ+++NL+ N +KFT   G+V V VG             ++D G
Sbjct: 925  CTPETPAQIKGDVTRLRQILVNLVGNGIKFTHE-GQVAVHVGVLKREGKDFLQFQVQDTG 983

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI    +  +   F Q   +      G GLGL I++ +    GG   + S   +G    
Sbjct: 984  IGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFT 1043

Query: 470  AILPNTRVLNFIPEDNHESTQYK 492
              +       ++P   H + + K
Sbjct: 1044 FTILAEGQKPYVPPKVHPALEGK 1066


>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/256 (37%), Positives = 141/256 (55%), Gaps = 1/256 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + + A++     ++ AE  N AKS+FLA+MSHELRTPLNA++GFSE I     GP 
Sbjct: 199 RDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLNAVIGFSEAILAGAAGPA 258

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  IH +GQHL  LI +ILD+SRIEAGR EL E      ++VR    +L+ +
Sbjct: 259 SLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVRAAARLLEHK 318

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           +    ++    I P L  +  D + +RQ++LNL  NA+KFT  GG+V +           
Sbjct: 319 SVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICATLVPDGLAL 378

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIA      +  +F Q   ++    QG GLGL I +  +  HGG   + S  
Sbjct: 379 V-VSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLDSAP 437

Query: 463 REGVEVIAILPNTRVL 478
            +G  +  +LP +R++
Sbjct: 438 GQGTRITVLLPTSRII 453


>gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 769

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E       E ++RAE  N AKS FLA++SHELRTPL
Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE++   T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I+L  I+ E I  L  +AQ K I +   I+  L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTP 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +   +        SIKD G GI +  I  +   F Q          G GLGL I
Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V  I+P  +
Sbjct: 737 SRSLLELHKGKLEITSKEGKGTIVTIIMPIQQ 768


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/478 (21%), Positives = 194/478 (40%), Gaps = 29/478 (6%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ----NPIFPMWSLI 78
           +      + D +  +    +  ++R++P      ++ + +          +P+   W L+
Sbjct: 1   MAHPDGQQSDIEARVFAEQIAMIYRLTPHTLAMSVIGSTLILVALWTSAPHPLLFGWYLL 60

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL-TLVEPGTWTPEYL 137
              +      L +    +D       +W    ++G IA GL W  + T++ P   +    
Sbjct: 61  HHVITLCRYRLIRSYRRADPPPAAAPLWARRFVIGTIAAGLIWATVGTVLFPPPGSDVQF 120

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I      + A  +  LS +   +        +   +S   + S         G     +
Sbjct: 121 FIGMYLVGVAATGMFTLSAYFWSFLPLAGLTLI--PMSLWLLASGVTSLQIAGGATFLFV 178

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                      +     +  + E +      E A     +              FLA+MS
Sbjct: 179 YIVLSNGRRFERITSDSIRLRIELNAAKEAAEAASRAKSQ--------------FLANMS 224

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +E++    +     E  +  +  ++RSGQ LL++IN+ILD S+IEAG
Sbjct: 225 HEIRTPMNGVLGIAELLLATPLA----EQQRSRLQTLYRSGQSLLDVINDILDFSKIEAG 280

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + EL ES   L  ++R+ +      A  K + +  ++   + + + AD+  +RQV+ NL+
Sbjct: 281 KLELRESDFDLRAMLRDVLDAFAATAAAKGLALSSRLGADVPAGLHADQARLRQVLTNLI 340

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT   GRV VTV     +    +++D G G+A  E   V  +F Q  ++      
Sbjct: 341 GNAIKFTEA-GRVVVTVERLDDQHLRFAVQDTGVGLAAEERARVFDAFAQADVSHTRRHG 399

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNHESTQYK 492
           G GLGL I++ I+    G+  + S    G      LP          P  +  ++  +
Sbjct: 400 GTGLGLAISRQIVTLMAGEIGVDSTPGAGSTFWFKLPFQPAQHEPATPAADPLASPQR 457


>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
 gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
          Length = 559

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 10/294 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           ++++N ++    A+      ELE         ++ AE    AK+ FLA MSHE+RTP+N 
Sbjct: 127 MYRTNNRLKIQSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNG 186

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G  +++    +     +  +EY   I  S   L+N+IN+ILD S++E+G+ EL E   
Sbjct: 187 VIGMIDLLMDSEL----QDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L   V+E   +    A +KN+E+   I+  +   V+ D   +RQV++NL+SNAVKFT  
Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302

Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG  + V++            ++KD G GI+  ++  +   F Q   ++     G GLGL
Sbjct: 303 GGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGL 362

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQYKCY 494
            I +S++   GG+  + SK  EG   +  +         P   +   S +Y+ +
Sbjct: 363 AICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLREEEHSGKYRVH 416


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 139/269 (51%), Gaps = 10/269 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           K  + +L    E+  +  E + A++   + +++AE  N AKS FLA+MSHE+RTP+N I+
Sbjct: 360 KVMLTLLRDITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLANMSHEIRTPINGII 419

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++  L ++     +T +E +         L  +IN+ILD S+IEAG+  + E   +L
Sbjct: 420 GMIDLTLLTSL----EKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNL 475

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
            +++ + I      A+ K +++   +  +L   +  D + ++QV+ NLLSNA+KFT   G
Sbjct: 476 KEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFTER-G 534

Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + V    G         ++ D G GIAE +   +   F Q   +I     G GLGL 
Sbjct: 535 EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGLGLA 594

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I++ ++   GG+  + S+  +G     +L
Sbjct: 595 ISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1524

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/252 (37%), Positives = 138/252 (54%), Gaps = 2/252 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I E + A+     T  + E     K  F+A+MSHELRTPL +ILG SEV++ E  G L
Sbjct: 1110 RDITERKRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVL 1169

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N E  +  +  I +SGQHLL LINEILDLS+IE+G+ EL  SA++L  + +  +  ++ +
Sbjct: 1170 NAEQLRS-LSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQ 1228

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
            A +KNI++     P    +  DE  +RQV++NLLSNAVKFT  G  + + +         
Sbjct: 1229 ADQKNIQLQFIATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCV 1288

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ++S+ D G GIA  +   +   F Q   ++     G GLGL + + I   H G   + S+
Sbjct: 1289 HLSVTDTGIGIAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSE 1348

Query: 462  LREGVEVIAILP 473
            +  G   I  LP
Sbjct: 1349 VGRGSTFIVTLP 1360


>gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
 gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
          Length = 923

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 23/436 (5%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL-----------CWTLLTLV 127
            + V        +        +   +      L G    GL            WT +   
Sbjct: 241 MVVVNPLRNDASRPFSIKTPLVRGAFPALARALAGVHGSGLFDDVENKPVVASWTYVPSF 300

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-------PVVVALSTQAIM 180
             G    +      + T     +   L  FM+P  + L+         P+  A+     +
Sbjct: 301 RWGMVVQQRTAEAFALTRAQRDATLWLLFFMIPPIIVLAMAVARTITRPIKTAVGVAEKV 360

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETR 239
           +   LD +                  +     ++     +K      EL++A       R
Sbjct: 361 AGGDLDANFEIESRDETGHLLTAIRSMTGELRELYGSMEDKIRARTRELQMANEELSVAR 420

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AEE +  KS FLA+MSHELRTPLNAI+G+SE+++ + +   + E  ++ +  I  +G+
Sbjct: 421 VAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDKGDAEPLED-LKKIEGAGR 479

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+ILDLS+IEAG+ E+    + +  +V E + ++Q  A++    +         
Sbjct: 480 HLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLAEKNGNALELVCPDDAG 539

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           S  +DE  ++Q +LNL+SNA KFT+  G+V + V   +       + D G G+ E ++  
Sbjct: 540 SFHSDETKVKQCLLNLMSNANKFTSK-GKVTLIVERDAQASVVFRVSDTGLGMTEEQLGR 598

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  +F Q   +      G GLGL I +      GGQ  ++S    G      LP+ + + 
Sbjct: 599 LFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPDAGSTFTITLPDQQKVP 658

Query: 480 FIPEDNHESTQYKCYA 495
              +   +++  K +A
Sbjct: 659 EKMKAEPDAS--KSHA 672


>gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 464

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 152/337 (45%), Gaps = 19/337 (5%)

Query: 159 LPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           L   VF  F P  +A   +    ++         G L             + K  + +L 
Sbjct: 113 LGRVVFGPFVPEDLAELPAALRDIAPDFDAKLAQGYLEKIRRVPVSTAEKILKHFMDLLD 172

Query: 217 CQAEKDD--------LIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELR 261
                           I  ++ +     E  +  E       E +  KS FLA+MSHELR
Sbjct: 173 VMVFTGHKNLIAAKLHIEAVQESYRELQEKNRELEDSYAKLKELDRLKSNFLATMSHELR 232

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +++G+SE++     GPL  E  +EY+G I   G++LL LI  ILD+S+IEAGR  L
Sbjct: 233 TPLTSVIGYSEMMLEGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRL 291

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             S +    I+R+ I  +   A++K +++      ++  V AD   +RQ ++NL SNAVK
Sbjct: 292 VLSDVDATQIMRDAIATVLPLARKKGLKVACD-AGAMPRVQADRDKLRQCLVNLCSNAVK 350

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT  GG + V+     G    I + D G GI E  +  V   F Q   +      G GLG
Sbjct: 351 FTPAGGTIAVSAEALPGDRLAIHVADTGIGIGEEHLGKVFDVFYQVDGSSTREYGGAGLG 410

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           L I +S +  HGG+  +RS    G     ILP    L
Sbjct: 411 LAIVKSFVEAHGGEVGVRSIPGVGTTFTVILPLRPSL 447


>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 559

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 10/294 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           ++++N ++    A+      ELE         ++ AE    AK+ FLA MSHE+RTP+N 
Sbjct: 127 MYRTNNRLKIQSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNG 186

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G  +++    +     +  +EY   I  S   L+N+IN+ILD S++E+G+ EL E   
Sbjct: 187 VIGMIDLLMDSEL----QDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L   V+E   +    A +KN+E+   I+  +   V+ D   +RQV++NL+SNAVKFT  
Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302

Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG  + V++            ++KD G GI+  ++  +   F Q   ++     G GLGL
Sbjct: 303 GGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGL 362

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQYKCY 494
            I +S++   GG+  + SK  EG   +  +         P   +   S +Y+ +
Sbjct: 363 AICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLREEEHSDKYRVH 416


>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
 gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
          Length = 1044

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 16/343 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L  A  +    +++A+           +I     +   ++    I     +     ++
Sbjct: 302 LTLLIAAGVWALSLILAIIGFLFARDITGNIKRLESILRKVAEAESIKDEKTEEIESKIN 361

Query: 217 CQAEK--DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
               +  +     LE A   + + +  AEE + AKS FLA+MSHE+RTPLN I+GF++++
Sbjct: 362 LDTTQGINAAYELLETALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLL 421

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P      +E++  I +S ++LL +IN ILDLS+IE+ + E+     + I+    
Sbjct: 422 KNTELTP----EQREFVNIIEKSSENLLEIINAILDLSKIESKKIEIENIVFNPIEEFEN 477

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            I +   RA EK+I     +DP L   +  D   +++V++NL+SNA+KFT  GG V V +
Sbjct: 478 AIEVYAPRAAEKDINFALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEI 537

Query: 394 GWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                       Y  ++D G GI E +   +  +F Q   ++     G GLGL I+   +
Sbjct: 538 RKVKEYNERAEIYFEVRDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFI 597

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
              GG+  + S++ +G +    L    VL  +P    ES + +
Sbjct: 598 KLMGGRLNLESEVGKGTKFFFTL----VLEEVP-ALTESLENR 635


>gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 623

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   + +   ++     E +  +AE       AK+ ++  ++ AEE N+ KS+FLA+MSH
Sbjct: 79  LERKVEERTAELKKAHRELEHRVAERTEELLHAKNQAEHAQRLAEEANVTKSQFLANMSH 138

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAILG+SE+++ E      +E   + +  I+ +G+HLL LIN++LD+S+IEAG+
Sbjct: 139 ELRTPLNAILGYSEILQEEAEELGQSECISD-LQRIYSAGKHLLELINDVLDISKIEAGK 197

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +LS     L  +++E I  +Q + ++K   +  KI   L ++ +D   +RQ++LNLLSN
Sbjct: 198 MDLSLETFDLAIVIKEVISNIQPQVEKKANILEVKIADPLGTMLSDLTKLRQMLLNLLSN 257

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A KFT   G + + V        +   + DNG G+ E +   V   F Q   +      G
Sbjct: 258 AAKFTEQ-GTISIEVKREQEETWFCFMVTDNGIGMTEEQQKKVFQPFTQADASTTRRFGG 316

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL I +      GG  L+ S+  +G     +LP    +   P+ +H++ 
Sbjct: 317 TGLGLAITKQFAEMMGGYILVNSEFGKGSTFKLLLPIETQI-TAPQQSHKTP 367


>gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 576

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 157/312 (50%), Gaps = 3/312 (0%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           + +      + L    IM++    +    +  T       +   L +  +     +  ++
Sbjct: 265 LPVWLQVSGLILGVVVIMTVTGFILWNRTLRRTVKLRTAQLEQELAERKMAEEELRKYRE 324

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L   +    +     ++RAE  +  KS FLA+MSHELRTPLN+I+GF+ ++     GP+
Sbjct: 325 NLEDLVRERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPI 384

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N+E  K+ +  +  S  HLL+LI+++LD+S+IEAG+ ++S     L + V++    +   
Sbjct: 385 NDEQAKQ-LTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGL 443

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             +K + +  +I   + S+ +D++ + QV+LNLLSNAVKFT   G + V     S     
Sbjct: 444 VDKKGLRLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQ-GTISVRCSRESEWYVT 502

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D+G GI E ++  +   F Q    +    +G GLGL I + ++   GG   + S+ 
Sbjct: 503 -SVADSGIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQ 561

Query: 463 REGVEVIAILPN 474
            EG     +LP 
Sbjct: 562 GEGSTFCFLLPA 573


>gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 580

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 149/249 (59%), Gaps = 3/249 (1%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                  S+  R  AEE    KS FLA+MSHELRTPLN+++GFSEV++ E  GP+ NE  
Sbjct: 333 ERRKLRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDELYGPM-NEKQ 391

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +EY+ +IH SG+HLL+LIN+ILDLS++E+G+ EL  SA SL D++ + + M + +A    
Sbjct: 392 REYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAMFKEKALRSA 451

Query: 348 IEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + I  + DP   +++ AD++ ++Q++ NLLSNA+KFT  GG + V+          I++ 
Sbjct: 452 VGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQVSARRMPD-FVEIAVA 510

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +IP +   F Q         +G GLGL +++ ++  HGG+  ++SK   G 
Sbjct: 511 DTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIRVKSKFGTGS 570

Query: 467 EVIAILPNT 475
                +P  
Sbjct: 571 RFSFTIPLK 579


>gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 523

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W    +   I +G+          G+ +     I  +  L +A++    +        + 
Sbjct: 139 WDRDYVAASIVLGVVLGAAATQAAGSLSGLRGRIIGAGLLTLAIASLHFTGMAAVTVSYD 198

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT--YITYHLFKSNVKILSCQAEKDD 223
           +   V         +++ V  ++L  ++   +      ++     +  +++ +   E D+
Sbjct: 199 AAAQVASNAVEPYTVAIAVAAVTLLIVILAFVGSAVERHLADRSVQETIRLRAHVLELDE 258

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              +LE   +      + A   + AKS+FLA+MSHELRTPLNAILGFSE++  ET GPLN
Sbjct: 259 TRKQLEKTSAELLVALQSASSADQAKSQFLATMSHELRTPLNAILGFSEIMAAETFGPLN 318

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N  Y +Y+ DI +SG+HLL+LIN++LD +R++AG   L E  I L + V + I M+  +A
Sbjct: 319 NARYSDYVQDIFKSGKHLLSLINDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQA 378

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + +NI +  +I   L  + AD + +RQV+LNLLSNAVKFT  GG VH+     +     +
Sbjct: 379 KAQNIALDYEIAADLPHLIADHRRIRQVLLNLLSNAVKFTPDGGEVHIGA-LVADGAMLL 437

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA   IP  L  FGQ    +    +G GLGLP+A+ +M +HGG   I S+L 
Sbjct: 438 RVTDTGIGIAAENIPLALERFGQIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELG 497

Query: 464 EGVEVIAILPNTRVLNFI 481
            G  V    P  RV+   
Sbjct: 498 RGTTVTVTFPPERVVAAA 515


>gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 849

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 146/266 (54%), Gaps = 2/266 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + +  AE  N AK  F+ +MSHELRTPLNA++GFS+++  ET GPL N
Sbjct: 567 ITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGPL-N 625

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y  +I +SG HLL++IN++LD+SR+E G  EL    + +  ++ E   +L   + 
Sbjct: 626 EKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSLSA 685

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           EKNI I  K++  L ++  D    +Q++ NLL+NA+KF++  G+V++    + G    IS
Sbjct: 686 EKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIKA-RSEGDMVEIS 744

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI E +   V   F Q   +I     GVGLGL + +  +  HGGQ  + +   +
Sbjct: 745 VKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASPGK 804

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490
           G      +P         ++     Q
Sbjct: 805 GSTFTFRIPKRPEKEIKEKEVTNPLQ 830


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 143/270 (52%), Gaps = 2/270 (0%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +++     ++     +++           + E     K  FLASMSHELRTPLNAILG S
Sbjct: 739  IRVCRDITQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLS 798

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            E ++ E  G + +   ++ +  I  SGQHLL LIN++LDL++IE+G+ EL   A+SL  +
Sbjct: 799  EALQEEVYGSITD-RQRKSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKL 857

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                ++ ++ +A  KNI++  ++   L  +  DE+ +RQV++NLLSNAVKFT  GG V +
Sbjct: 858  CNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVIL 917

Query: 392  TVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         S+ D G GIA+  +P +  SF Q    +     G GLGL + Q  + 
Sbjct: 918  KAEEDLLRNTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTIE 977

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             HGG+  + S++ +G      LP  +    
Sbjct: 978  IHGGRVDVESEVGQGSCFRVTLPIKQSGEP 1007


>gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3]
          Length = 769

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E       E ++RAE  N AKS FLA++SHELRTPL
Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE++   T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I+L  I+ E I  L  +AQ K I +   I+  L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HANVDCRAMKQIFLNLISNAVKFTP 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +   +        SIKD G GI +  I  +   F Q          G GLGL I
Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V  I+P  +
Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC
           11218]
          Length = 807

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 161/321 (50%), Gaps = 13/321 (4%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           Y + +              +S   +  ++A  LAT       ++   F  + +    +  
Sbjct: 378 YVLIVGLIGFYALFLMFIWLSSKQMSQAIAQPLATIQDMVHKVSLGDFNVSHRRFRLKEL 437

Query: 221 KD------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            D       +  +L+       + + +AE  N+AKS+F++++SHE+RTP+N+ILG S ++
Sbjct: 438 DDTADSVMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLL 497

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    +E  + ++  I +SG+HLL+LIN+ILD+S+I+AG+ ++ E    L  +V +
Sbjct: 498 MTSNL----SEEQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYD 553

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
              + + +A++  +++   +D SL  +  D   ++Q++LN +SNA+KFT  G   + V  
Sbjct: 554 VHDIFEYKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQG 613

Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
             TS       +S++DNG G++  +   V  SF Q   +      G GLGL I + I   
Sbjct: 614 AVTSESVFALRLSVEDNGIGLSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHL 673

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG+  + S+L +G      L
Sbjct: 674 MGGEVGVESRLGDGSTFWLTL 694


>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
          Length = 896

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 138/269 (51%), Gaps = 10/269 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           K  + +L    E+  +  E +  ++   + +++AE  N AKS FLA+MSHE+RTP+N I+
Sbjct: 360 KVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHEIRTPINGII 419

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++  L ++     +T +E +         L  +IN+ILD S+IEAG+  + E   +L
Sbjct: 420 GMIDLTLLTSL----EKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNL 475

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
            +++ + I      A+ K +++   +  +L   +  D + ++QV+ NLLSNA+KFT   G
Sbjct: 476 KEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFTER-G 534

Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + V    G         ++ D G GIAE +   +   F Q   +I     G GLGL 
Sbjct: 535 EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGLGLA 594

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I++ ++   GG+  + S+  +G     +L
Sbjct: 595 ISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 169/345 (48%), Gaps = 16/345 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL---- 207
           SAL+   +   +FL    +V+      I+ + V+   +             +   +    
Sbjct: 96  SALTERFVMLLLFLGGATLVLGGLVFFIVYVDVVRPLVWISHGVTKFGADNLPETIEPPK 155

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                ++++   + +D +A++    +     + +AE+ N  KS FLA+MSHE+RTP+N I
Sbjct: 156 RPLGEELVTLYTQYNDTVAKMREYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGI 215

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G + +++    G   +E  +E+I  +  S   LL++IN+ILD S+IEAG+ EL    ++
Sbjct: 216 IGMASLLK----GTPLDEEQREFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELN 271

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L ++ ++   + +LR +EK +E    +D +L   +  D   +RQV++NL+ NAVKFT   
Sbjct: 272 LFELCKDIEHLFRLRTKEKGLEFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFT-QS 330

Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G+V V++   +  G        ++D G GI   ++ TV   F Q   ++     G GLGL
Sbjct: 331 GKVSVSIRQVAEAGDNITVTFEVEDTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGL 390

Query: 443 PIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDN 485
            I+  I+   GG+  + S+  EG            ++   +P D 
Sbjct: 391 AISSQIVELMGGEIEVESREGEGSRFFFTVTFERAQMPEAMPGDT 435


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 10/264 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                +  ++L  +++   +     ++ AE+ N+AKS+FLA+MSHE+RTPLN I+GF  +
Sbjct: 412 AEELCSFINNLEEKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSI 471

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +E   +      T ++YI  I  S + LL +IN+ILD+S+IEAGR E+ + A  +  ++ 
Sbjct: 472 LEKTDLDS----TQQDYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIE 527

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             I +   +A+EK +E+   I+ ++   +  D   +RQ+I NL+SNAVKFT   G V + 
Sbjct: 528 STIFLYDAKAREKGLELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTH-NGEVFIE 586

Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V            Y  I+D G G+ E EI  +   F Q   +      G GLGL I + I
Sbjct: 587 VSVIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKI 646

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
           +   GG   ++S    G      L
Sbjct: 647 VEMMGGTISVKSVKNRGTTFCFDL 670


>gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 844

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 165/336 (49%), Gaps = 10/336 (2%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
             +   L+   ++ ++  +    V +S   +V+A+   + ++  +  +            
Sbjct: 515 LDAVLSLVHTQVTTMAQQLAASTVMMSAVVIVIAIWMASFLTRRITAVVQGIRRFEDGDM 574

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +     +SN ++    +  +D+   +  +   ++E R RAEE +  KS FLASMSHE
Sbjct: 575 AHRLP---VQSNDEMGVLASSFNDMADRVGESFQRAEEARLRAEEASRMKSEFLASMSHE 631

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN I+GF+E+I+ +      +E  +E    I +SG HLLNL+N ILD+++IEAG  
Sbjct: 632 LRTPLNGIIGFAELIKDDA----ADEEMRENAEIIEKSGSHLLNLVNTILDVAKIEAGAM 687

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L+   + +  +V E   + Q  A  K ++   ++   L   +  D   +RQV+ NLLSN
Sbjct: 688 TLARETVDIRTLVTEVAAIHQSGADAKGLDFQVQLADDLPPALVTDPVRVRQVLHNLLSN 747

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT  G    V           I + D+GPGIA      +   F QG   +  +  G 
Sbjct: 748 AVKFTQAGRVHTVVAA--DKDSVVIRVIDSGPGIALDLQDKIFEKFHQGDAFLTRSHGGT 805

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLGL +A+ ++   GG+  + S++ +G   +  LP 
Sbjct: 806 GLGLTLARHLVELMGGEMSLESQVGQGSTFVFTLPA 841


>gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 769

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E       E +++AE  N AKS FLA+MSHELRTPL
Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE++   T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I+L  I+ E I  L  +AQ K I +   I+P L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEPKL-HADVDCRAMKQIFLNLISNAVKFTP 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +   +        SIKD G GI +  I  +   F Q          G GLGL I
Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V   +P  +
Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTITMPIQQ 768


>gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 538

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 162/320 (50%), Gaps = 21/320 (6%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
             +VA     I+  H+  ++L   +  A +F T I        +   +       +I  +
Sbjct: 234 AFLVASILNDIIYAHIKKLALLISIIIAATFLTVI-------LLTYFAILTNARKMIKTM 286

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E           KS FLA+MSHELRTPLN+I+GF  +I     G + NE  +
Sbjct: 287 EQDNIKIKE-------LERLKSEFLATMSHELRTPLNSIIGFVSMILQGISGDI-NEEQR 338

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  +H S  HLLNLIN+ILD+S+IEAG+   S+   ++ D++ E +  +     +K +
Sbjct: 339 KQLSMVHSSSIHLLNLINDILDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEV 398

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  +I   +  V++D+  + Q++LNL+SNA+KFT   G + +      G    IS+ D 
Sbjct: 399 KLITEIPDEIPEVYSDKTRVFQILLNLVSNAIKFTEK-GEIRIKCE-VDGDKLKISVSDT 456

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E ++ T+  +F Q S + +   QG GLGL +++ ++   GG+  + S+  +G   
Sbjct: 457 GKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTF 516

Query: 469 IAILPNTRVLNFIPEDNHES 488
              LP   V     E+NHE 
Sbjct: 517 TFTLPLKSVE----ENNHEE 532


>gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 707

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 2/255 (0%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I E +  +      ++ AE  N AKS FLA+MSHELRTPLN+I+GFS+++  +  
Sbjct: 453 ETGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVY 512

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L N    + +G+I  SG+HLLNLINEILDLS++EAG +EL  S   L D+  E   ML
Sbjct: 513 GEL-NARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDML 571

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A  K I++  +I+  L  ++ D + + QV+ NL++NAVKF+     V V     +  
Sbjct: 572 FPFAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQ-NNN 630

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+ D G GIA  +   +   F Q   +     QG GLGL + + I+  HGG    +
Sbjct: 631 FIEVSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFK 690

Query: 460 SKLREGVEVIAILPN 474
           S++ +G      +P 
Sbjct: 691 SEVGKGSTFGFSIPL 705


>gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 461

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 3/326 (0%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215
             LP A+        VA +T  +  +  + +  A  +    +     + +   K+ +   
Sbjct: 126 AALPAALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                  D   EL+      +++  + +E +  KS FLA+MSHELRTPL +++G+SE++ 
Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               GPL  E  +EY+G I   G++LL LI  ILD+S+IEAGR  L  S +  + ++R+ 
Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L   A++K +++     P L  + AD   +RQ ++NL SNAVKFT  GG + V+   
Sbjct: 305 VATLLPIARKKGLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEV 363

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D+G GI E  +  V   F Q   +      G GLGL I +S +  HGG+
Sbjct: 364 LPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481
             +RS    G     +LP        
Sbjct: 424 IRVRSAAGTGSVFTVLLPIRAAPAPA 449


>gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 570

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 31/429 (7%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R   I  L ++LV  +  +         W+ + L + +    L         + G   +
Sbjct: 20  RRSRTIRLLMMVLVGGLLAFNFGWKATLAWAAVNLVLESWLAVLNAWFK--PREDGRTSL 77

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY-AVF 164
                L    A    W+++  +     +P     + +  +L  L I  L    L   A+ 
Sbjct: 78  AVR--LCPGAAFSATWSVMAALCWIHGSPPMK--FAALIILFGLLIEGLKYASLSQTAML 133

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P ++AL    +M      +     + T      Y+   +       L         
Sbjct: 134 ALIPPPLIALVVAPVMFGGFSGLGRVMAVITLAGLAAYVLDAMRLVRASAL--------- 184

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                      ++ +  A+E N AKS FLA MSHELRTP+N +LG +  +    +    +
Sbjct: 185 ---------ALEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQL----D 231

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I +SG  L+ ++N+ILDLS+IEA + E   +   +  + R+   +    A+
Sbjct: 232 ARQADYVETIVQSGDGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSETAR 291

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K + +   + P     +  D   +RQ++LNL+SNA+KFT   GRV + +   +  G  I
Sbjct: 292 RKGLSLTLDVAPETPQWLAGDPARVRQILLNLVSNALKFTEE-GRVALRIAPHAAGGVEI 350

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G G++  +   + T F QG  +I     G GLGL I + +    GG+    S+  
Sbjct: 351 TVSDTGAGMSPEQQAKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSRPG 410

Query: 464 EGVEVIAIL 472
           EG     +L
Sbjct: 411 EGSTFTVVL 419


>gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 632

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 2/249 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+      +  AE  N AK+ FLA++SHELRTPLNAI+GFS+++     G LN+
Sbjct: 381 ITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLND 440

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K Y+ +I +SG HLL LIN+ILD+S+++AG+ +L    +   +I  +    +     
Sbjct: 441 KELK-YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIA 499

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +KN+     +D + +++ AD+  M Q++ NLL NA+KFT   G + +         Q +S
Sbjct: 500 KKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQ-VS 558

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI E     +  SF Q   +     +G GLGL + +  +  HGG   + S++ +
Sbjct: 559 VKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGK 618

Query: 465 GVEVIAILP 473
           G     ++P
Sbjct: 619 GSTFTFVIP 627


>gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 729

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/256 (39%), Positives = 144/256 (56%), Gaps = 3/256 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I E + A++L  E ++ AE  N  KS FLA+MSHELRTPLN+I+GF++++  +  
Sbjct: 460 EMCRDITESKAAETLLQE-KQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVY 518

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L NE   + +G+I +SG+HLLNLIN ILDLS+IEAG+ ELS     L   +     +L
Sbjct: 519 GEL-NERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLL 577

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A  KN++I   ID SLSS++ADE    Q++ NL+ NA+KF+   G V +      G 
Sbjct: 578 SPIADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIEA-RKKGD 636

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D G GI   +   +   F Q    +    QG GLGL + + I+  HGG    R
Sbjct: 637 LVEITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFR 696

Query: 460 SKLREGVEVIAILPNT 475
           SK  EG     ++P  
Sbjct: 697 SKPGEGSTFAFVIPIE 712


>gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 580

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 179/449 (39%), Gaps = 19/449 (4%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
            +  FR         L +A    + T+      W  + +     +  + +     + ++ 
Sbjct: 10  AQVRFRELKTRVGLALFIAGTAWFLTKGLWPIGWFAVVVVTQFIDWLVFRP-TRLNTQMP 68

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
               +R+ + +      + ++ ++     T                 L +S   + + P 
Sbjct: 69  LSRAYRVVMCLTTTLNVVVYSAISAYLWMTGGEAGRLFAIIQVAGGLLHVSLHMHHVRPL 128

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            +       +  L    + ++         +    + + T++   + +S++   + Q   
Sbjct: 129 LLSAVVPHSLYFLGLPIMGAVLDGQPQDVLIAIGGVLYMTHLIVAVRQSSMTTRALQD-- 186

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                    A   +   R++AE  + AKS FLA +SHE+RTP+NA++  + ++    +  
Sbjct: 187 ---------ANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLLRRTRL-- 235

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   +E++  +  +G  L+ L+N++LD S+IEAG+ +L    I L D +   I + + 
Sbjct: 236 --DREQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEP 293

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
           +A    + +   ID +    +  D   ++Q++ NLLSNAVKFT   G + + V W     
Sbjct: 294 KASANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFT-EDGTISIAVDWRAEDG 352

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+ D G GI    +  +  SF Q          G GLGL I++ +    GG+    
Sbjct: 353 RLIVSVADTGCGIPADRLAHIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAE 412

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S   EG      LP       + E    +
Sbjct: 413 SVEGEGSVFTLSLPVEVAEASVVEPKRRA 441


>gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 858

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 150/357 (42%), Gaps = 3/357 (0%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
            +       TLLI      +   +              A   Q  +        LA    
Sbjct: 224 FFGVFAVGTTLLIWQIRRTVVIPIQRLTAAARAIGTGSATREQMAVFDQPQMQQLARRGD 283

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                         +   +  +          ELE A  ++ E RK AE+ N  KS+F+A
Sbjct: 284 EPGELARSFQSMAHEVADREQNLNTAVMQRTEELEQALKIAGEARKEAEDANQTKSQFVA 343

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAI+G+SE++  E+     N  Y   +  I  SG+HLL L+N+ILD+SRI
Sbjct: 344 NMSHELRTPLNAIIGYSEILLEESED-DGNTQYAPDLERILNSGKHLLALVNDILDISRI 402

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+ EL   +  +   ++  I   +    +    +  + D SL  +  D    RQ++LN
Sbjct: 403 EAGKMELYLESFPICREIQTVIDTARPVIDKNQNSLVFECDDSLGHMRGDLTKFRQILLN 462

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA KFT + G + ++V         I++ D G G+ E ++  +   F Q   +    
Sbjct: 463 LISNAAKFTQV-GTLTLSVRREDTDHFTIAVADTGIGMNEEQLGRLFQVFSQADASTTRK 521

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             G GLGL I++      GG     S    G      LP T V      +   +T  
Sbjct: 522 YGGSGLGLSISRHFARMMGGDITATSTPGSGSVFTVSLPLT-VEPQTQTEPANATDI 577


>gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/320 (31%), Positives = 157/320 (49%), Gaps = 3/320 (0%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215
             LP A+        VA +T  +  +  + +  A  +    +     + +   K+ +   
Sbjct: 126 AALPPALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                  D   EL+      +++  + +E +  KS FLA+MSHELRTPL +++G+SE++ 
Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               GPL  E  +EY+G I   G++LL LI  ILD+S+IEAGR  L  S +  + ++R+ 
Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L   A++K +++     P L  + AD   +RQ ++NL SNAVKFT  GG + V    
Sbjct: 305 VATLLPIARKKGLKVSCDPSP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEV 363

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    I + D+G GI E  +  V   F Q   +      G GLGL I +S +  HGG+
Sbjct: 364 LQGERLAIHVVDSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423

Query: 456 FLIRSKLREGVEVIAILPNT 475
             +RS    G     +LP  
Sbjct: 424 IRVRSAAGTGSIFTVLLPIR 443


>gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
 gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120]
 gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
          Length = 575

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 10/328 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L   V +     + A+            + +   +A  ++           +    +  
Sbjct: 247 RLIVMVSMLVSVAIAAIVAWRTSRAIAEPVIMVTQVAEQVARKPNFDLRAPVTTEDEIGL 306

Query: 218 QAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            A+  + LI  +       ++ ++ AE  + AKS FLA++SHELRTPLNA++G S++++ 
Sbjct: 307 LAKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKD 366

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           +      +  +   +  I+ +G+HLL LIN+ILDLS+IEAG+  L      ++ ++   +
Sbjct: 367 DAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVV 426

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + ++   ++ N  +    D  L +++AD+  MRQV+LNLLSNA KFT   GR+ +TV   
Sbjct: 427 VTVKPTIEKNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFT-TNGRIKLTVRRE 485

Query: 397 SG--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          ++ D G G++  +   +   F QG  +      G GLGL I++  
Sbjct: 486 KEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHF 545

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
               GG+ +++S+L  G      LP   
Sbjct: 546 CQMMGGEIIVKSQLGLGSTFTVYLPLQE 573


>gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 461

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 3/320 (0%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215
             LP A+        VA +T  +  +  + +  A  +    +     + +   K+ +   
Sbjct: 126 AALPAALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                  D   EL+      +++  + +E +  KS FLA+MSHELRTPL +++G+SE++ 
Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               GPL  E  +EY+G I   G++LL LI  ILD+S+IEAGR  L  S +  + ++R+ 
Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L   A++K +++     P L  + AD   +RQ ++NL SNAVKFT  GG + V+   
Sbjct: 305 VATLLPIARKKGLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEV 363

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D+G GI E  +  V   F Q   +      G GLGL I +S +  HGG+
Sbjct: 364 LPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423

Query: 456 FLIRSKLREGVEVIAILPNT 475
             +RS    G     +LP  
Sbjct: 424 IRVRSAAGTGSVFTVLLPIR 443


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 148/269 (55%), Gaps = 1/269 (0%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             L +     L+   ++  L  +L+V      +     +     K  FLA+MSHELRTPLN
Sbjct: 1070 QLLQQIANQLAIAIQQASLFEQLQVEIEDKQQKNAELDRATRLKDEFLANMSHELRTPLN 1129

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            AILG +E ++ E  G + NE  ++ +  I ++G HLL LIN+ILD+S+IE+G+ EL  ++
Sbjct: 1130 AILGMTEGLQDEIFGQI-NERQRKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTS 1188

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
              +I + +  +  ++ +A +K I++   I  ++  +  DE+ +RQVI+NLL+NAVKFT  
Sbjct: 1189 TEIIPLCQSSLAFVKQQAVKKRIQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPE 1248

Query: 386  GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            GG+V + V          ++KD G GIA   IP +   F Q   A+     G GLGL + 
Sbjct: 1249 GGKVGLEVVQIGENTVRFAVKDTGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALV 1308

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + ++  HGG+  + S+L  G      LP 
Sbjct: 1309 KRLVDLHGGEVSVTSELGVGSCFSVDLPL 1337


>gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 871

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 6/246 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    + +  ++ AE    AK +FLA+MSHE+RTP+NAI G ++++         NE  K
Sbjct: 478 QQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRR----NPNEDQK 533

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I +S   LL +IN+ILD+S+IEAG+ EL     S++++V     ++Q +A+EK +
Sbjct: 534 EYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKAEEKGL 593

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR-GQYISIK 406
            + + I     +V  D   +RQ++LNL+ NA+KFT  G     V       +   + ++ 
Sbjct: 594 GLLKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKGLVTTSVKSEQVGDKINVHFTVS 653

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI    +  +  SF Q          G GLGL I++ ++  H G+  + S+  +G 
Sbjct: 654 DTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVESEKGKGS 713

Query: 467 EVIAIL 472
           +    +
Sbjct: 714 QFHFTI 719


>gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 145/256 (56%), Gaps = 1/256 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + + A++     ++ AE  N AKS+FLA++SHELRTPLNA++GFSE I     GP 
Sbjct: 199 RDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILAGATGPA 258

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  IH +GQHL  LI +ILD+SRIEAGR EL E      ++VR    +L+ +
Sbjct: 259 SLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHK 318

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A    ++    I P L  +  D + +RQV+LNL  NA+KFT  GGRV ++          
Sbjct: 319 AVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHVPEGLA- 377

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D G GIA      V  +F Q   ++    QG GLGL I +  +  HGG   + S+ 
Sbjct: 378 LTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLASEA 437

Query: 463 REGVEVIAILPNTRVL 478
            +G  +  +LP +R++
Sbjct: 438 GKGTRITVLLPASRII 453


>gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 625

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 12/283 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +K  L   ++       +    A+  N AKS FLA+MSHELRTPL  ++G S  + 
Sbjct: 214 QVQQQKQTLERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLL 273

Query: 276 L-----ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
                 +    L  E  K Y+  IH SG++LL LIN+ILDLS++E+G+  L  S  SL  
Sbjct: 274 RLYSQPDNFPALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQK 333

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + ++C+  L+  A+EK + +  +I        AD + +RQ++LNLLSNA+KFT  GGRV 
Sbjct: 334 LAQQCLHTLRDFAKEKGVNVNLQIKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVT 393

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +TV     +     +KD G GI++ +   +   F Q     +    G GLGL + + ++ 
Sbjct: 394 LTVSR-KDKTAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVE 452

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            HGG     S++  G +    +P        P  N  S+ YK 
Sbjct: 453 LHGGSIQFESEVGLGTKFTVYIPI------QPLINKSSSNYKT 489


>gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C]
          Length = 769

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E       E ++RAE  N AKS FLA++SHELRTPL
Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE++   T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I+L  I+ E I  L  +AQ K I +   I+  L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTP 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +   +        SIKD G GI +  I  +   F Q          G GLGL I
Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V  I+P  +
Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 780

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 8/263 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E   A+      +++AE  N  KS FLA MSHE+RTP+N+ILG +E++    + P 
Sbjct: 377 HDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSESPLTP- 435

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+    R+G  LL LIN+ILDLS++EAGR EL     +L ++++  + +L+  
Sbjct: 436 ---EQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENL 492

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A+E+ + +  +    + ++   D   +RQ+++NL+ NA+KFT   G V ++V  +S    
Sbjct: 493 ARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHD-GSVKISVEKSSDDAT 551

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D+G GIAE +  +V   F Q   +      G GLGL I   ++   GG+  ++
Sbjct: 552 NLLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLK 611

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           S L EG      LP   V    P
Sbjct: 612 SALGEGSCFTFTLPLPPVQIDEP 634


>gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 705

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A    +  ++ AE  N AKS FLA+MSHELRTPLNAI+G+SE++  E     
Sbjct: 415 EDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELG 474

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   + +  I+ +G++LL LIN+ILD+S+IEAGR +L   A  +  ++   +   Q  
Sbjct: 475 YEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDISSLLESVMGTAQPL 533

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395
             + N  +      ++  ++AD   +RQ++LNLLSNA KFT   G++ + V         
Sbjct: 534 MSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TNGKIKLEVSRVSSLPYS 592

Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             SG      + D G G+++ +   +   F QG  +      G GLGL I+       GG
Sbjct: 593 QESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGG 652

Query: 455 QFLIRSKLREGVEVIAILPNT 475
              + S L EG     ++P  
Sbjct: 653 NIQVESTLGEGSTFKVVIPTR 673


>gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 815

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+E +  KS F+A++SHEL+TPL AI G+SE++    + P   E  + Y   I++  + L
Sbjct: 460 AKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP---ERVRNYYQIIYKESERL 516

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+N++L++SRIE+GR EL +  + +  I++E     Q R  +    I  +     + V
Sbjct: 517 TQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSKH--TIVLQFPEYPTFV 574

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QV  NLL NA+K++  GG V V V         I ++D G GI    +P + 
Sbjct: 575 LGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMED-ILIEVQDQGVGIPPEHLPHIF 633

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   +++ +  G GLGL I +SI+  HGG+    SK+ EG      LP  
Sbjct: 634 DRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEGTTFTIRLPRR 687


>gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 575

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 145/307 (47%), Gaps = 11/307 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            + V V      I S+               +FF      LF +++  L   +    L  
Sbjct: 274 VWSVGVVTPVPFITSIVRSIYLKQATFMIITTFFI-----LFFTSLISLIFFSWNRKLEE 328

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E++      + + +R ++ N  K+ FL+ +SHEL+TPL AI   SE +  E     + ET
Sbjct: 329 EVDKKTEQLENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDY---DRET 385

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E +  I R+      +++++LD+SRIE+GR    E  + L +I+   I M++  A + 
Sbjct: 386 QEEMLDLIIRNIDRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKH 445

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISI 405
            I I +++D     V AD+  + +V +NLL+NA+KFTA  G  + +    T G    IS+
Sbjct: 446 GIAIERELDND-PRVKADKDKLLRVFVNLLNNAIKFTADRGESIKIKTEET-GDFVEISV 503

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI E E   +   F Q     +    G GLGL I + I+  HGG   ++S+   G
Sbjct: 504 IDKGIGIPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVG 563

Query: 466 VEVIAIL 472
              +  L
Sbjct: 564 STFVFTL 570


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 144/257 (56%), Gaps = 9/257 (3%)

Query: 225  IAELEVAKSLSDETRKR-----AE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
            I E + A+    E+ +R     AE       K  FLASMSHELRTPLNAILG +E ++ E
Sbjct: 1292 ITERKQAEKQLRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEE 1351

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              G L      + +  I +SG+HLL+LIN+ILDLS+IE+G+  LS S +S+  +    + 
Sbjct: 1352 VYGSLT-PKQHKSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLT 1410

Query: 338  MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             ++ +AQ+KNI +   I P LS +  DE+ +RQV++NLLSNAVKFT  GG+V + V    
Sbjct: 1411 FIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDP 1470

Query: 398  GRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +S+ D G GIA   +  +   F Q   ++     G GLGL + + I+   GG  
Sbjct: 1471 DGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSI 1530

Query: 457  LIRSKLREGVEVIAILP 473
             + S++ +G      LP
Sbjct: 1531 ALESEVGKGSCFTVNLP 1547


>gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 849

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 174/305 (57%), Gaps = 6/305 (1%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS-DETRKRAEEENLA 248
             +   A            K N + +    E      E     + + ++ + RAEE N +
Sbjct: 538 GLVSVGADITALKDQQRALKDNDREMRRTVENLRRSQERVQELAANYEQEKIRAEEANRS 597

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLNAI GFSE++  E  GPL +E Y++Y+ DI  SGQHLL+LIN+I
Sbjct: 598 KSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLLSLINDI 657

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAG+ +L    +   +++ +C+ +++ RA+EK+IE+  +    L  + AD + +
Sbjct: 658 LDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTVEGSE-LPEITADPRAL 716

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QVILNL+SNAVKFT  GG+V +  G+ +  G  + + D G GI+E ++  V   F Q  
Sbjct: 717 KQVILNLMSNAVKFTPEGGKVKLR-GFQAADGVVLQVSDTGIGISEDDLQRVGRPFEQIE 775

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDN 485
                  QG GLGL +++S++  HGG   I S+L EG  V   LP   ++      P  +
Sbjct: 776 SQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLPAEPIVADAGPAPRPS 835

Query: 486 HESTQ 490
            ++ Q
Sbjct: 836 GQAAQ 840


>gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1]
 gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 501

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 164/362 (45%), Gaps = 16/362 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-AL 174
              L W   + +     +P    +         ++  A+++  +    +L +  + +  L
Sbjct: 1   MTALVWASGSFLFFVPNSPADQIVLVLIY--TGITSGAIASLSVRKEYYLVYLFLFLSPL 58

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +     S + +  ++  +L     F T ++   F+        + E  DLI +       
Sbjct: 59  AYLFYTSHNEISTTVIILLVIYGIFLTSLSLKYFQMINDGFKIRYENLDLIKD------- 111

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +    A+  +  KS FLA+MSHE+RTP+  ILGF E +        N+         I
Sbjct: 112 LQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAK----KENDPERLRQFNII 167

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +SGQ LL++IN+ILDLS+IE+G+  L      L  +  + I +     + KNI++ ++I
Sbjct: 168 TKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHKEI 227

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412
           D  L   +  D+   +QVILNLLSNA+KFT  GG + +   +    +    +++D G GI
Sbjct: 228 DEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGLGI 287

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  +  +  +F Q   +      G GLGL I+  ++    GQ  ++S L EG      +
Sbjct: 288 GKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYLDV 347

Query: 473 PN 474
           P 
Sbjct: 348 PV 349


>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 639

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 11/323 (3%)

Query: 157 FMLPYAVFLSFFPVVVALS--TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
             L     L    +V  L      ++   + ++S A            IT    K N +I
Sbjct: 145 LWLLSITLLQTGLIVAGLLYIVLTMIVRPIQNVSRAMSDFEGGFTPNKITGRSRKFNDEI 204

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                + +  IA+LE+     +  +++AE  N+ KS FLA+MSHE+RTP+N I+G + ++
Sbjct: 205 TQLIKKYNACIAQLEINYQQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLL 264

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E  +     ++  K Y+  +  S   LL++IN+ILD S+IEAG + LS     +  ++ +
Sbjct: 265 EETS----PSDIQKNYLDILTSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQ 320

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                 +RA +K +     I+P+L   +  D+  ++QV+ NL+ NA+KFT   G + + V
Sbjct: 321 QSNEYSVRAAQKQLMFQCNIEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQ-GHIELKV 379

Query: 394 ---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                      YI IKD G GI +  + ++   F Q   +      G GLGL I++ I+ 
Sbjct: 380 NSLHIEQHPHLYIEIKDTGIGIDKDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVE 439

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
             GG+  + S++  G      +P
Sbjct: 440 MMGGELKVTSEVGLGSSFYFTIP 462


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 969

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 12/300 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 + + +       +     I E +  ++     R++AE  N AKS FLA+MSHE+
Sbjct: 551 LRTQAWIQRDSQGKAEQVSGLVFDITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEI 610

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NA++G  EV+    +    ++  + YI  +  +G+ LL+LIN ILDLS+IE+GR E
Sbjct: 611 RTPMNAVIGMGEVLLETKL----DQEQRHYIETLQHAGEALLDLINAILDLSKIESGRME 666

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L E    L  +V E   + Q++ +++ IE+    + S  + +  D+  +RQ++ NL+ NA
Sbjct: 667 LVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNA 726

Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           VKFT   G V V +      +     I D+G GI   +  T+   F Q   ++     G 
Sbjct: 727 VKFTDE-GSVTVEIRSIEQEKTLLFKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGS 785

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-----FIPEDNHESTQYKC 493
           GLGL I + ++ +  G+  + S+  +G      LP             P D  +    K 
Sbjct: 786 GLGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLPCRPTAPKAEIISNPHDAQQKQSKKA 845


>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1407

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 135/271 (49%), Gaps = 9/271 (3%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            L +  V +     + +     L     L  + R  AE  N AKS FLA+MSHE+RTPLN 
Sbjct: 852  LEEQAVHLQILNEKLEQQYGRLAQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNG 911

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            ++G + ++E   +    +E  +EY   I   G+ LL +IN+ILD S+IE+G+ EL +  I
Sbjct: 912  VIGMTALLEDTPL----SEEQREYAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPI 967

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L   + E + M   +A +  +++  +IDP     +  D   +RQ+++NL+ NAVKFT  
Sbjct: 968  ELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVPPQILGDSLRLRQILINLVGNAVKFTHQ 1027

Query: 386  G----GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G    G   V V          +++D G GI   +I  +  +F Q   +      G GLG
Sbjct: 1028 GEVMVGVQLVAVRPDQAVELAFTVRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLG 1087

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I+Q ++   GG   + S++ +G      L
Sbjct: 1088 LIISQRLIELMGGVIRVESEVGKGTAFRFTL 1118


>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1263

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 12/263 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              + E +  +   ++ R+ AE  + AKS FLA+MSHE+RTP+NA++G S+++    +  
Sbjct: 516 QHDVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL-- 573

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             NE  ++ +  IH+S + LL +IN+ILD S+IE+GR EL      L ++V +   +   
Sbjct: 574 --NEEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGD 631

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
           +     +E+   I P L   +  D   + Q+++NLLSNA KFT  GG V + +       
Sbjct: 632 KVHAGGLELLYDIPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVA 691

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    ++D G G+++ ++  +   F Q   +      G GLGL I++ ++   GG+
Sbjct: 692 NDQATLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGE 751

Query: 456 FLIRSKLREGVE--VIAILPNTR 476
             + S   +G        LP  R
Sbjct: 752 LEVESAPGKGSTFSFTLTLPLGR 774


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 1271

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 90/271 (33%), Positives = 151/271 (55%), Gaps = 12/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E+  AK  +++    AE+ + AKS FLA+MSHE+RTP+N ILGF+EV+  + + P   
Sbjct: 516 VTEVAKAKRQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSP--- 572

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I + G+ L++LIN+ILDLS+IE+G+  + E++ SL  ++ E + +++ +  
Sbjct: 573 -QQQESVKIIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFL 631

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           E+N+E+   I+ +L   +  D   +RQV+ NL+SNA KFT   G V ++V   S  G   
Sbjct: 632 EQNVEMKIDIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQ-GYVKISVAEESISGADH 690

Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  I+D G GI + ++  +  +F Q   +      G GLGL I +S+    GG+  
Sbjct: 691 QIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEIN 750

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           + S++ +G      +P  +V     E   ES
Sbjct: 751 VESQVNKGSIFSFYIPVNKVEISEEEKLMES 781


>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
 gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
          Length = 807

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 13/321 (4%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           Y + +              +S   +  ++A  LAT       ++   F  + +    +  
Sbjct: 378 YVLIVGLIGFYALFLMFIWLSSKQMSQAIAQPLATIQDMVHKVSLGDFNVSHRRFRLKEL 437

Query: 221 KD------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            D       +  +L+       + + +AE  N+AKS+F++++SHE+RTP+N+ILG S ++
Sbjct: 438 DDTADSVMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLL 497

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    ++  + ++  I +SG+HLL+LIN+ILD+S+I+AG+ ++ E    L  +V +
Sbjct: 498 MTSNL----SDDQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYD 553

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
              + + +A++  +++   +D SL  +  D   ++Q++LN +SNA+KFT  G   + V  
Sbjct: 554 VHDIFEYKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQG 613

Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
             TS       +S++DNG G++  +   V  SF Q   +      G GLGL I + I   
Sbjct: 614 AVTSESVFALRLSVEDNGIGLSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHL 673

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG+  + S+L +G      L
Sbjct: 674 MGGEVGVESRLGDGSTFWLTL 694


>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 572

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 10/263 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               Q +   L   +    +   + +  AE+ N+AKS FLA MSHELRTP+N ++GF+ +
Sbjct: 164 REELQLQNRSLEETVAKRTAAFLKAKDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASL 223

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    M    ++   +++  I  SG  LL++IN+ILD S+IEAGR EL   + +L + ++
Sbjct: 224 LLETQM----DDEQTDFVETIRNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQ 279

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E I +    A EK +++  +   +L   V  D   +RQV+LNL+SNA+KFT  GG V +T
Sbjct: 280 EVISITTPIASEKELKLDLEYSDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGG-VTIT 338

Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
               S         I++ D G GI++     +   F Q   + +    G GLGL I++ +
Sbjct: 339 ATPNSNSDTHSMVRIAVSDTGIGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRL 398

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
               GG   I S   EG      
Sbjct: 399 SEMMGGDITIDSSPGEGSTFNFT 421


>gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 752

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 4/305 (1%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKILSCQAEKDDLIAELE 229
            L    I        +  G L T     + I  H   L     K+     E D +  + E
Sbjct: 437 ILLLSDIWLNFYDRPTAGGGLVTVGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQSE 496

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E + +AE+ + AKS FLA+MSHELRTPLNAI GFSE++  E  GPL +E Y  
Sbjct: 497 EHARKYAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIG 556

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y  DI  SGQHLL++IN+ILD+++IEAG+  +S   I  ++ V   + M++ RA +K+I+
Sbjct: 557 YAEDILSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDID 616

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +   +   +  +  D + ++Q++LNL+SNA+KFT  GG ++++V         +S+ DNG
Sbjct: 617 LNLTVKDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISV-VKENAFVRVSVADNG 675

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI + +IP +   F Q S       +G GLGL + +S    HGG+  I S+  EG  V 
Sbjct: 676 IGIPKQDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVS 735

Query: 470 AILPN 474
            +LP 
Sbjct: 736 FLLPV 740


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1081

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++    ++   +T +        K  FLA+MSHELRTPLNAILG +E ++ E  G L
Sbjct: 675 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 734

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   K+ +  I RS  HLL LIN+ILDL++IEAG  +L  +  S+  + +  I  ++ +
Sbjct: 735 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 793

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396
           A +K I I  +I  +L  ++ DE+ +RQV++NLL+NAVKFT   G++ + V        +
Sbjct: 794 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 853

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D G GI E ++  +   F Q   A+    +G GLGL + + I+  HGG  
Sbjct: 854 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 913

Query: 457 LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491
            + SK+  G + I  +P   +L     P  +  ++ +
Sbjct: 914 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 950


>gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 583

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 193/454 (42%), Gaps = 16/454 (3%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS--LGKKVMNSDIKIGEVYV 105
           +S +     L  + I           ++  + L ++A +L     ++    +  +  +  
Sbjct: 114 ISLLRAPLSLPASTISVLDLLCLAGSLFYGLALMLHAVHLHKVEAQRARRRNPDLLPLIH 173

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
                +V     G  W L    E     P    + +         +  L       A+  
Sbjct: 174 QLGDFVVVHDRSGTAWALNRHFEHHLGLPPDDLMGRGLFD----HVHVLDRPAFLRAIAD 229

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY----ITYHLFKSNVKILSCQAEK 221
           +      +  T  +        S+                       ++     +     
Sbjct: 230 AAGGEGASNITIRLRGRGEDLSSVEPCFRWFDVCINRFENGHAKKREEAEADDQAMIIGV 289

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I+ +   +   D  R  AE  N AK RFLA+MSHELRTPLNAI+GFSE++    + P
Sbjct: 290 YRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEMLADPQLCP 349

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            +    +EY   IH SG+HLL+++N ILD+S+I +G + L    I L  ++  C  ML+ 
Sbjct: 350 QDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIASCCAMLRP 409

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--R 399
           +A+ K IE+ Q        + AD++  +Q++LNLLSNAVKFT   GRV + V        
Sbjct: 410 QAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVDCVVDCLD 469

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I+++D G GI+  ++  +   F Q  +  +   +G GLGL I + ++  HGG  LI 
Sbjct: 470 DIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELHGGTLLIE 529

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           S+  +G  +I  LP        P+D  E  +++ 
Sbjct: 530 SEPDQGTSMIVRLPR----EGRPQDKTEGREWRT 559


>gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 813

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 90/250 (36%), Positives = 144/250 (57%), Gaps = 2/250 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + +  AE  N AK+ F+ +MSHELRTPLNA++GFS+++  ET+GPL N
Sbjct: 533 ITERKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPL-N 591

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y  +I +SG HLL++IN++LD+S++E G  EL    + +  I+ E   +L   + 
Sbjct: 592 EKQKRYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSA 651

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +KNI I   I+  L +V AD   ++Q++ N+L+NA+KF++  G+V++           IS
Sbjct: 652 DKNIIIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPRED-MIEIS 710

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   V   F Q   +I     GVGLGL + +  +  HGG+  +++    
Sbjct: 711 VEDEGIGIQESDYEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGG 770

Query: 465 GVEVIAILPN 474
           G      +P 
Sbjct: 771 GSIFTFRIPK 780


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 10/273 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +  +   S    K+ L  ++ +  +     ++ AE  N AKS FLA+MSHE+RTP+
Sbjct: 507 RDVTERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQAKSEFLANMSHEIRTPM 566

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+I+G S +     +    N+  + YI  +  S + LLN+IN+ILD S+IEA + ++   
Sbjct: 567 NSIIGMSSLALQTPL----NDKQRGYIEKVSHSAESLLNIINDILDFSKIEARKMDIENV 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L  ++ +   +L+L+ +EK +E+   ID  +   V  D   +RQ++LNL +NAVKFT
Sbjct: 623 PFMLPSLIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRLRQILLNLGNNAVKFT 682

Query: 384 AIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G + +    +         + S++D G GI++ +   +  SF Q   +      G G
Sbjct: 683 QQ-GEIIIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFSQADTSTTRRFGGTG 741

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ ++   GG   + S+  +G      +
Sbjct: 742 LGLAISKRLIQLMGGDIWVESEENKGSTFHFTI 774


>gi|311103649|ref|YP_003976502.1| His Kinase A phosphoacceptor domain-containing protein 1
           [Achromobacter xylosoxidans A8]
 gi|310758338|gb|ADP13787.1| His Kinase A phosphoacceptor domain protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 609

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 93/464 (20%), Positives = 175/464 (37%), Gaps = 20/464 (4%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP-- 73
           + P         P    +   I  + V++L R  P      L+ A    +     +    
Sbjct: 1   MQPAIGPTSASTPPSSSYAARIRQVQVDALRRSFPFALAGSLISACFSAFALVGVLPLHE 60

Query: 74  --MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
             +W   TL V     +                 W   +L G +  G+ W L        
Sbjct: 61  IMLWLGATLMVGVLRWAAVVAYDRRRADPAAAQRWVRRMLAGNLCSGILWGLPLAYWTFF 120

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
              EY   +      +       SN+ML   ++    P    +          + ++L  
Sbjct: 121 VPLEYQLFFIVILFGLGTGAI-YSNYMLLPVMYAFEVPAFAPMFIALAAQPSAIHLALVT 179

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                L       + + ++++  L    E   L+ ++          +  AE  +L KSR
Sbjct: 180 GGLAYLIATLAFIHRMNRTHLDALRLGYENLALLEQVRQ-------EKIAAERSDLEKSR 232

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+ SH+LR P++A+  F  ++  E +        +  + +I  +   + +L + +L+L
Sbjct: 233 FLAAASHDLRQPVHAVNLFLGLLANEPLSRHG----RYLVDNITSALSAMGHLFDALLNL 288

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           SR++AG  E       +  ++ +       +A EK + +  +  P  +SV +D   + ++
Sbjct: 289 SRLDAGVIEPRFETFRMQPLLDQLKAEYAPQAGEKGMRLRVR--PCAASVRSDPVLLERM 346

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+SNA+  +  GG V V      G    + + DNG GI + E   V   F Q +   
Sbjct: 347 LRNLISNAIVHS-DGGCVLVGCRRV-GNRLRVEVWDNGSGIPKAEQERVFWEFHQLANPE 404

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +G+GLGL I +      G +  +RS+          +P +
Sbjct: 405 RDRSKGLGLGLAIVRRTARLLGHELALRSEAGRSTVFTVTVPAS 448


>gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component
           regulatory system [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
          Length = 477

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 152/256 (59%), Gaps = 1/256 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                ++++         E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+I+ E+
Sbjct: 212 YRNTRMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSES 271

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +GP+ N  YKEYI DIH SG HLL+LIN+ILD S+ EA +  +      L  IV  C  M
Sbjct: 272 LGPIENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNM 331

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397
           +  RA++  + + + +      + AD K ++QVI+NLLSN++KFT   G V + V +   
Sbjct: 332 MIPRAEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLE 391

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +   I I D G GIA+ ++  V++ FGQ         +G GLGLP+++ ++    G F 
Sbjct: 392 DKLIIIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFK 451

Query: 458 IRSKLREGVEVIAILP 473
           I+S+   G  +    P
Sbjct: 452 IKSEPNSGTVITLTFP 467


>gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 908

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 186/439 (42%), Gaps = 21/439 (4%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           LF    +L    L        +  NP F  +S+ T                  +K+ E  
Sbjct: 223 LFASCFVLFFMSLNGYGFYYLWPNNPKFQQYSVFTFIAVTLIFLAE--FTIRFLKVRERR 280

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA------TLLIALSISALSNFM 158
           +W +WLL           L++ +         + ++ S       TL+   +   L N  
Sbjct: 281 IWYLWLLELVQYTSAI-ALISCLFFSYEVMIQILMFLSIFAAGTCTLVGFGARQYLGNAA 339

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKIL 215
           L Y          +AL       +   +          A   +            + +  
Sbjct: 340 LIYTSAWIMVACGIALLALNKFGVLPSNWVTQYSVPAAAALQALLLSFALGYRIQDEQRN 399

Query: 216 SCQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
              AEK+ L   L+   A++ S + R  AE E+ AK+ FLA MSHE+RTPLN I+G S++
Sbjct: 400 REIAEKNALKERLKANQAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDL 459

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   M    NET   Y+  I+ SG+ LL +IN+ILD S+I AG+ E+    I L+D++ 
Sbjct: 460 LKNTNM----NETQSRYVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLD 515

Query: 334 ECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +C  +     ++K+I++  + +      + +D   +RQVILN LSNA+KFT   G V + 
Sbjct: 516 QCAGIFAKDIEKKDIDVTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQK-GSVQLI 574

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G    + +KD G GI   +  ++  +F Q   +      G GLGL I + I    
Sbjct: 575 LS-VEGNTLNLKVKDTGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELM 633

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GG   + S   EG      
Sbjct: 634 GGGVSVESNENEGSVFEFY 652


>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 951

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 182/491 (37%), Gaps = 22/491 (4%)

Query: 7   NKEKDVGLLISPTGDHLGLEYPSK-MDFDREIITLHVESLFRVSPILPL-FVLLVANIGT 64
            ++K          + L     +   D D E++   +           +      A    
Sbjct: 36  QQKKAFAERTETVANRLADTLSAPVADADDELLETLIRRSLNERDARSIRLFNASAAEWA 95

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
               +P+ P + +         L  G +     + +      R           L W  L
Sbjct: 96  MHGPSPLGPAYPISISDTRQLRLYEGDRTFRYLVPVFSPEDLR---TALPSPRPLGWVEL 152

Query: 125 TL-VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA----- 178
                          +   + LL+AL I +   F L   +      ++  +         
Sbjct: 153 EFDYASTQVGHYQTILRNLSLLLVALFIISGIAFYLNREITRPVQSMIKTVVDIREGNLE 212

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                     L  +     +    I          +     +  + +  +E+     D  
Sbjct: 213 SRVPETSKGELRELEEGINAMAMTIKDAYNDMQNSVEQATLDLRETLETIEIQNIELDMA 272

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ A++ N  K+ FLA+MSHE+RTPLN I+GF+ ++    +        ++YI  I  S 
Sbjct: 273 RREAQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSNLTK----KQEDYISTIMSSS 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q LL +IN++LD  +IEAG+  L   + +L + + E + ML   +  KN+E+       +
Sbjct: 329 QVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFADV 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
              +  D   ++QV+ NL+SNA+KFT   G V +       +G      +S+ D G G++
Sbjct: 389 PEQLVFDPLRLKQVLTNLISNAIKFTNE-GSVVIRTMIEQQQGNKVTVRVSVTDTGIGLS 447

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +   +  +F Q   +      G GLGL I++ ++   GG   + SK  EG      + 
Sbjct: 448 KTQQKALFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGSTFWFNI- 506

Query: 474 NTRVLNFIPED 484
              V     + 
Sbjct: 507 KADVAPAAQQP 517


>gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis
           R1]
          Length = 772

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/272 (40%), Positives = 150/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E         ++RAE  N AKS FLA++SHELRTPL
Sbjct: 502 KSLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPL 561

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 562 NAILGFSDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 621

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  I+ E +  L  +AQEK + + + I P L     D + +RQ+ LNL+SNAVKFT 
Sbjct: 622 NIDLGPIISEAVRTLTPQAQEKKVSVTENIAPKL-HAEVDCRAIRQIFLNLISNAVKFTP 680

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + V   +         IKD G GI +  I  +   F Q          G GLGL I
Sbjct: 681 SGGNIDV-CAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTHTGSGLGLAI 739

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V   +P  +
Sbjct: 740 SRSLVKLHKGKLEITSKEEKGTTVTITMPIQQ 771


>gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 568

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 6/270 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNA 266
           S  +ILS   +   L+   +  +   DE    ++RAE  +  KS FLA+MSHELRTPLN+
Sbjct: 299 SVAEILSIGIDITQLVHTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNS 358

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GF+ ++     GP+N+E  K+ +G +  S  HLL+LI+++LD+S+IEAG+ ++     
Sbjct: 359 IIGFTGILLQGLSGPINDEQAKQ-LGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPF 417

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L + + + +  ++  A++K +++   +   + ++  D + + QV+LNLLSNA+KFT  G
Sbjct: 418 DLRESILKVVQSVRPLAEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQG 477

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V V+ G         S++D+G GI + E+  +   F Q    +    +G GLGL I++
Sbjct: 478 G-VRVSCGREGDAFLT-SVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISK 535

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            ++   GG+  + S   +G      LP  R
Sbjct: 536 KLVELMGGEIRVESSPGKGSTFAFTLPLER 565


>gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 364

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 3/286 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLA 248
           G +        +IT  +          + +K  ++     A+ +++  R  +  +E +  
Sbjct: 73  GFVRDYALAIRHITNRVTDVLYNASVYKDDKGRVLGVFAAARDVTERKRFEQSLQEASRM 132

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLN I+GF+E +     G L N   KEY+GDI  SG+HLL LIN++
Sbjct: 133 KSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTL-NPKQKEYLGDILNSGKHLLQLINDV 191

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL+++EAG+ +L+  +  L   + E   + +  AQ+K+I +   + P LS V  D++  
Sbjct: 192 LDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIHVRLTVAPELSCVTLDQQKF 251

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV+ NLLSN +KFT  GG V +      G    +S+KD G GI   +I  +   F Q  
Sbjct: 252 KQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTGIGIKPEDIQRLFREFEQLE 311

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                  +G GLGL + + ++   GG   + S++  G     +LP 
Sbjct: 312 SGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFSVVLPL 357


>gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 575

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 11/327 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSC 217
              +      V +A       S  + +  +              +       +  +I   
Sbjct: 248 LIVMVSMLVSVAIAAIVAWRTSRAIAEPVITVTQVAEQVARKPNFDLRAPVTTEDEIGLL 307

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               + LI  +       ++ ++ AE  + AKS FLA++SHELRTPLNA++G S++++ +
Sbjct: 308 AKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDD 367

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 +  +   +  I+ +G+HLL LIN+ILDLS+IEAG+  L      ++ ++   ++
Sbjct: 368 AADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVL 427

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++   ++ N  +    D  L +++AD+  MRQV+LNLLSNA KFT   G + +TV    
Sbjct: 428 TVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFT-TNGSIKLTVRREK 486

Query: 398 G--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                         ++ D G G++  +   +   F QG  +      G GLGL I++   
Sbjct: 487 EDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRHFC 546

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476
              GG+ +++S+   G      LP   
Sbjct: 547 QMMGGEIIVKSQPGLGSTFTVYLPLQE 573


>gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 572

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/255 (36%), Positives = 144/255 (56%), Gaps = 2/255 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +S     +  AE  + AKS FLASMSHELRTPLN+I+GFS+++  +  GPL N
Sbjct: 303 ITDNRKMQSELVRAKMEAEIASKAKSEFLASMSHELRTPLNSIIGFSDMLLTQNFGPL-N 361

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    Y+ +I  SG HLL LIN ILDLS++EAG+ EL     S++D + E  ++L   A 
Sbjct: 362 KKQLRYVNNISVSGNHLLKLINGILDLSKVEAGKMELKVEEFSVLDSISEVKVLLTPLAS 421

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K+I+I   +D  L+++ AD    +Q++ NL+ NA+KFT   G V V      G    I 
Sbjct: 422 KKDIQILSVVDKELTTIRADRTKFKQILYNLVDNAIKFTHEDGFVIVDA-RVEGDQAKIM 480

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI++  +  +   F Q   +    ++G GLGL + +  +  H G+  + S+  E
Sbjct: 481 VKDTGIGISKAGVKKIFQPFTQLENSEYGKQKGTGLGLSLVKKFVEMHTGKIWVESEFGE 540

Query: 465 GVEVIAILPNTRVLN 479
           G + I  +P +  + 
Sbjct: 541 GSKFIFTIPLSLTIP 555


>gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
 gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
          Length = 911

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/283 (41%), Positives = 167/283 (59%), Gaps = 10/283 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K+   +   QA   DL  + E       E + RAEE N +KS FLA+MSHELRTPLN
Sbjct: 584 QLRKTVDDVKRSQARIADLAKKYE-------EEKIRAEEANRSKSEFLANMSHELRTPLN 636

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI GFSE++  E  GPL ++ Y  Y+ DI  SG+HLL LIN+ILD+S+IEAG+ +L    
Sbjct: 637 AINGFSEIMMQEMFGPLGDDRYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEP 696

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
               ++V + I +++ RA+EK +++   +   L  +  D +  +QV++NL+SNAVKFT  
Sbjct: 697 TDASELVEQSIRIVRGRAEEKQLKLRADVS-DLPEIEVDPRAFKQVMINLVSNAVKFTPE 755

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV V  G+ SG G    + D G GIA+ ++P +   F Q       + QG GLGL ++
Sbjct: 756 GGRVTVR-GFLSGLGVAFQVSDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALS 814

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +S++  HGG   I S L EG  V  +LP ++    IP D  +S
Sbjct: 815 KSLIELHGGTLSIDSVLGEGTTVSVVLPISQD-QPIPRDAIKS 856


>gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1054

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 12/274 (4%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I E + A+    + +++A+  N AKS FLA+MSHE+RTP+NA++GFS+++  +     
Sbjct: 762  RDITEHKQAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGFSDILASKV---- 817

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             ++  K Y+  I  +G+ LL LIN+ILDLS+IEAGR ++    ++L  I  E   +  L+
Sbjct: 818  TDKKQKTYLDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLK 877

Query: 343  AQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGR 399
              EKN+E   + D +L  V   DE  +RQ++LNL+ NA+KFT   G + +    G T   
Sbjct: 878  MAEKNLEFILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDS-GYIKLCANKGSTEND 936

Query: 400  G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   ++++D+G GI   +   +  SF Q          G GLGL I + ++    G 
Sbjct: 937  HSQVDLILAVEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGH 996

Query: 456  FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              + S   +G      L   +V   +P    ++T
Sbjct: 997  ITVESHPGKGSRFEIALHEVKVAVALPAVVQDNT 1030


>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 848

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 162/343 (47%), Gaps = 10/343 (2%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           Y +   LIA  + +L+  +    + +    V +A+   + ++  +  +       +    
Sbjct: 515 YDTVMALIAAQVESLARELSISTLIMIALVVGIAVWMASFLTRRITAVVGGIHRFSEQET 574

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +     + N ++ S     + +   +  +    DE RKRAEE +  KS FLA+MSHE
Sbjct: 575 EYRLP---VQGNDEMASLAISFNQMADRVAESFVRLDEARKRAEEASRMKSEFLANMSHE 631

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN I+GFSE+I  E      ++  +E    I +S +HLL L+N ILD+++IEAG  
Sbjct: 632 LRTPLNGIIGFSELIRDEA----ADDETRENADIIEKSSRHLLELVNSILDIAKIEAGAM 687

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            LS   + L  +V E   + Q  AQ K I +  ++      ++ AD   +RQ++ NLLSN
Sbjct: 688 TLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRVAGDCPATIQADPLRLRQILHNLLSN 747

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT   G V ++V           + D G GI E  +  +   F Q    +  +  G 
Sbjct: 748 AVKFTET-GEVALSVDLQPDH-LVFKVSDTGAGIPEAMLHAIFEKFRQVDSFLTRSHSGT 805

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GLGL +A+ ++   GG   + S + +G      LP  +     
Sbjct: 806 GLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLPLHQTETPS 848


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/383 (24%), Positives = 162/383 (42%), Gaps = 26/383 (6%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           +L    A  +    + LV+        L  Y      I +    +   +   +  +   P
Sbjct: 150 ILRPVFAQNVLVGAIHLVDDMQQVRNRLHTYYIVVAFIVVITLMVVLLLSNKSQKIFTRP 209

Query: 170 VVVALSTQAIMSMHVLDIS---------LAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           ++  + +   +++                  ++         I        +     +  
Sbjct: 210 LLELMQSIREVTIKKNYDVRVKKQGRDEFGTLIDCFNDMIGEIHARDEDLKMYSADLEKR 269

Query: 221 KDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                A+L  AK   +       + ++ AEE + AKS+FLA+MSHE+RTP+N +LG +E+
Sbjct: 270 VKLRTADLSQAKKALEAMVVTLEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAEL 329

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +     E  + +   I  SG  LL +IN+ILD S+IEAG+ EL     +L  ++ 
Sbjct: 330 LMETDL----TEEQRRFSKTIQSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILID 385

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + + ML  RA  K +E+   I P     +  D    RQV+ NL+ NA+KFT   G V V 
Sbjct: 386 DVMQMLASRAHAKQLELAVLIPPETCIFLRGDPTRFRQVLTNLVGNAIKFTKQ-GEVVVQ 444

Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V  T         ++ I+D G GI++ ++  + + F Q   +      G GLGL I++ I
Sbjct: 445 VATTVSDQNRVKLHVLIRDTGIGISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEI 504

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
           +A  GG     S+  +G      
Sbjct: 505 VALMGGDLHCESEPGKGSTFSFT 527


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 26/380 (6%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLS 166
            LL       + W +++++   +     L I     A LL   ++  L        V   
Sbjct: 266 VLLNYLRMDPMGWQVISVLPQASLMAPMLRIGGVGLAVLLACFAVITLVAMRYSRRVVAP 325

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +      Q I    +  +                         +++       D + 
Sbjct: 326 IRAISE--GFQNIQQDRLEQVRPLP------------PSRTQDEIKEMVGWFNAFLDNLH 371

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
               ++    + ++ AEE N AK  FLA+MSHE+RTP+NAI+G +++     +   + E 
Sbjct: 372 GRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQL----ALDAGSPEE 427

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +++I    RS Q LL +IN+ILD S+I+AGR E+    +SL +++     +    AQ+K
Sbjct: 428 KRDFIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQDK 487

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQ 401
            IE+   +D SL + +  D   +RQ++ NL+SNA+KFT   G V V V   +    G   
Sbjct: 488 GIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPA-GEVVVRVEKVAELASGVAC 546

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D G GIA  ++P +  SF Q   ++     G GLGL I++ ++   GG+  + S+
Sbjct: 547 RFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDSQ 606

Query: 462 LREGVEVIAILPNTRVLNFI 481
             +G      L   R+L   
Sbjct: 607 PGQGSCFWFELTLARLLEES 626


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 12/257 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  ++  +    + +++AE    AK  FLA+MSHE+RTP+N I+  SE++  E +   
Sbjct: 494 RDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDI--- 550

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  K Y+  I  S   LL +IN+ILD+S+IEAG+ +L      + D++ + + M   R
Sbjct: 551 -SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHR 609

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
             +K IE+   IDP +   +  DE  + Q+++NL+SNAVKFT  GG + V V     R  
Sbjct: 610 TSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKELENRSA 669

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     IKD G GIA   I  +   F Q   +      G GLGL I + ++   GG
Sbjct: 670 ESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGG 729

Query: 455 QFLIRSKLREGVEVIAI 471
           +  + S+  +G      
Sbjct: 730 EIRVESEPEKGSTFSFT 746


>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
          Length = 945

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 10/277 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               I     + +   +       + I E  +A+    + +++AE  N AKSRFLA+MSH
Sbjct: 273 RLLKIKSRPQRDDKGNIQYLICTANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSH 332

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N I GF E+++   +        KE+I +   + + LL++IN+ILD S+IEA +
Sbjct: 333 EIRTPMNGIFGFLELLQATNLSL----EQKEFIREAKSASEILLHIINDILDFSKIEAKK 388

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             + +   +L + + + + +L  +A EKN+E++  I+P++   V  D   +RQV+ NL+S
Sbjct: 389 LTMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLIS 448

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT+  G + V V       +       +KD G GI +  I T+  SF Q   +   
Sbjct: 449 NAVKFTSK-GEISVKVDCLKEENKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTR 507

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              G GLGL I+  ++   GG+  + S + EG     
Sbjct: 508 KYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKF 544


>gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1376

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 18/298 (6%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                I   +  +  +    + EK   + ELE       E  + A+  N AKS FLA+MSH
Sbjct: 835  LIEAIAQQVGIALAQAQLLEQEKLHKL-ELEHKNQALKEATRHAQAANRAKSEFLANMSH 893

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+NAILGF ++++       +    ++Y+  I  SG+ LL+LIN+ILDLS+IEAG+
Sbjct: 894  EIRTPMNAILGFCDLLQSLV----SEPRQQQYVKSIAASGKTLLSLINDILDLSKIEAGK 949

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             EL +  I L  ++ E   +   +A EK +E+ ++I+ +L   +  DE  +RQ++LN++ 
Sbjct: 950  MELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDNLPKAIMFDEVRLRQILLNMVG 1009

Query: 378  NAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            NA+KFT   G V ++V   S                I+I D G GIA  +   +  SF Q
Sbjct: 1010 NALKFTDE-GWVKISVVTNSNTPLNAENPESTISLEIAIADTGIGIAPEQQQRIFDSFIQ 1068

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                      G GLGL I + +    GG   + S+L +G +   I PN   +++ P+D
Sbjct: 1069 SEGQSTRKYGGSGLGLAITKRLTQMLGGTISLESQLGKGSQFTLIFPNVTPIDWQPDD 1126


>gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 630

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 172/305 (56%), Gaps = 5/305 (1%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L      +     +S    +         +     +   ++   +  +  L  +    + 
Sbjct: 317 LQIGEYWTGEGTLVSFGTDITMQKQTQHRVLEREQQMRARVDGFEQSRRQLEIQARQLRE 376

Query: 234 LSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           L++   E + RAE  N AKS FLA++SHELRTPLNAI+GFSE++    +GP+ N  Y+ Y
Sbjct: 377 LAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYESY 436

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           + DIH SG++LL +IN+ILD+S+IEAGR+ LS    ++ D+ +EC+ ++   A E N+E+
Sbjct: 437 VKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNVEL 496

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            Q  + S+ S++ D + ++QV++NLLSNAVKFT   G+V +           I+I D G 
Sbjct: 497 SQSGNTSI-SLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYR-GSIRIAIADTGV 554

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + ++  +   F Q S  +    +G GLGL I++S++  HGG+  I+S++ EG  V  
Sbjct: 555 GIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVTC 614

Query: 471 ILPNT 475
           ILP  
Sbjct: 615 ILPVQ 619


>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
          Length = 967

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 12/290 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   + +   ++L         I E    ++  ++ R+ A   N AKS FLASMSHE+RT
Sbjct: 281 LAMRVEERTAELLKSNNLLKQEIDERHRIEAELEKAREAAVAANNAKSEFLASMSHEIRT 340

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G S+++   T+ P       EY+     +G++LL +IN+ILDLS++EAG+  + 
Sbjct: 341 PMNAIIGMSDLLWETTLTP----KQSEYVKVFRNAGENLLQIINDILDLSKVEAGQITIE 396

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
               +L + + +   ++  RA EK +E+   +   + +    D   + Q++ NL+ NA+K
Sbjct: 397 HIEFNLREQIEKTCEVMAFRAHEKGLELNCHLAEDIPTSFIGDPVRLHQILTNLIGNAIK 456

Query: 382 FTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G + +T                + D G G+ E +   +   F Q   +      G
Sbjct: 457 FTRT-GEILLTGKRNKLPGKKGMLLFLVSDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGG 515

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            GLGL I + ++    G+  + S   +G         T  ++  P++  E
Sbjct: 516 TGLGLAICKRLVELMDGEIWVESTPGKGSTFYFT--VTFDVHPKPQEQKE 563


>gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 806

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 139/263 (52%), Gaps = 9/263 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  ++  I +   AK L +E  ++AE  N AK+ FL+ MSH++RTP+NAI+G +++  
Sbjct: 381 EDRRIQEAAIEKERQAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQLAR 440

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +     +  K+Y+  I  +  HLL+LINE+LD+S+IE+G  +L E+  +L  ++ + 
Sbjct: 441 ---LHTGEEKRLKDYLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLLEDV 497

Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + M+++   +K   +   I+  L   V  DE+ ++Q+++N+L NA K+T   GR+ + + 
Sbjct: 498 VEMVRISLDQKCQSLSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISIRLN 557

Query: 395 WTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             +            I+D G G+    I  +   F +   +  S   G GLG+ I ++++
Sbjct: 558 ELNKMTQTMGTYCFIIEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVKNLV 617

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
           +  GG   I S+   G   +  L
Sbjct: 618 SMMGGDIQIESEYGNGTRFLITL 640


>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
 gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
          Length = 574

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 155/325 (47%), Gaps = 11/325 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           ++   +       +VA  T   ++  V+ ++         S F        +  + +L+ 
Sbjct: 249 VIMSMLVSVAIAAIVAWRTSRAIAEPVIIVTQVAEQVARKSNFDLRAPVTTEDEIGLLA- 307

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               + LI  +       ++ ++ AE  + AKS FLA++SHELRTPLNA++G S++++ +
Sbjct: 308 -KSLNRLIERVSERTKELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDD 366

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                    +   +  I+ +G+HLL LIN+ILDLS+IEAG+  L      +  ++   ++
Sbjct: 367 ATDLDLTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVL 426

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++    + N  +    D  L +++AD+  MRQV+LNLLSN+ KFT   G+V +TV    
Sbjct: 427 TVKSAIDKNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFT-TNGKVTLTVKREK 485

Query: 398 G--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                         S+ D G G++E +   +   F QG  +      G GLGL I++   
Sbjct: 486 TDLPPEAAFDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFC 545

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
              GG+  ++S+   G      LP 
Sbjct: 546 QMMGGEVFVKSQPGVGSTFTVHLPL 570


>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 935

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 26/318 (8%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +  +    +  F Y    L +   + +  +        EL  AK  ++   + AE  +L 
Sbjct: 524 IVLIAIVVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAREAEAASLT 583

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+NA++G+S+++         +   + Y+  I    + LL LIN+I
Sbjct: 584 KSEFLANMSHEIRTPMNAVIGYSDLLSNTV----KDPQQRNYLDAIRAGSRSLLMLINDI 639

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LDLSRIEAG+  L  SA+S+  ++ +   +  LRA E+ I +   +D  + + +  DE  
Sbjct: 640 LDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEVSVDSKMPAAMMLDETR 699

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------------------GQYISIKD 407
           +RQV+ NL+ NA+KFT  GG V V    T  +                       +++ D
Sbjct: 700 LRQVLFNLVGNAIKFTHEGG-VTVRATATPRKSSEKQPVEETASEVDRRCFYRLVVTVSD 758

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   +  +F Q          G GLGL I++ ++   GG+  + S+   G  
Sbjct: 759 TGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMMGGELQVESEPGAGST 818

Query: 468 VIAILPNTRVLNFIPEDN 485
               LP         E++
Sbjct: 819 FTVKLPRVEATGAQAEED 836


>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
 gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
          Length = 822

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 12/330 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC--QAEKDDLI 225
             VV+ +    +   + L  ++   ++   +    + ++  + ++  L    + E   + 
Sbjct: 236 AAVVLFVGLMMLFWGYRLSGAMQEHISRLEALVKTMPHNGEEVDLAQLRFDSRKEIQKVY 295

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             LE +   +D+ R+ A +   AK  FLA+MSHE+RTPLN I+GF +++E   +    NE
Sbjct: 296 QLLESSLEKADKERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPL----NE 351

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E+I  +  S Q+LLN++N+ILD S+IEAG+ EL E     ID     +     +A  
Sbjct: 352 EQREFIRVVQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALH 411

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400
           K I+    +DP+L   +  D   + QV++NL++NA+KFT  GG V V             
Sbjct: 412 KGIDFAVYVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVF 471

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA  +   +   F Q          G GLGL I+  ++A  GG+  + S
Sbjct: 472 VKFVVSDTGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVES 531

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +  +G      LP  +     PE    S Q
Sbjct: 532 EPGKGSSFFFTLPLKKD-PEAPERRRPSFQ 560


>gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 782

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 30/455 (6%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90
           + + V    R   +  L++                 +W   TL        +    L+  
Sbjct: 179 LLIFVSIRDRSYLLYVLYLGTFTLNLFTREGLSYQWLWPQATLWNHYSLPILNLLTLAFS 238

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV---EPGTWTPEYLTIYKSATLLI 147
                  +++ +        LV   ++   +  LTL+        +   +  +    + +
Sbjct: 239 ILFTCQFLELKKRAPAINRWLVATASVLALFAPLTLINFHFFIQASTAVILPWPLIAIAL 298

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALS-----TQAIMSMHVL-DISLAGMLATALSFFT 201
           ++ +         Y +       +  ++      Q I    +L +I   G    AL    
Sbjct: 299 SIWLIRQGYSPARYFLLAFTAVALATMAYILKTFQLIDGGWILENIMQLGTFTEALLLSF 358

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + + +     +    Q E +      EV +    E          A+S FLA MSHE+R
Sbjct: 359 ALAHRMTVLKSENARIQREAN------EVLEQRVTERTGELNAALSARSEFLAVMSHEIR 412

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+G  ++++    G   ++  +  +  I +SG  LLNLIN+ILD SRIEAG+  +
Sbjct: 413 TPLNGIIGTVDMLK----GTPLDDEQRHNLNVIEQSGNSLLNLINDILDYSRIEAGKMPI 468

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAV 380
            +++ +L +++ E + + Q +A   +  +  +I P +      D   +RQ+++NL+SNAV
Sbjct: 469 EQTSFNLFNLINESLALFQHKAHVHSNTLTLEIAPHVGERCLGDPVRLRQILVNLISNAV 528

Query: 381 KFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           KFT   G + V V          +  + D+G GI+E +   +   F QG  +      G 
Sbjct: 529 KFT-DNGTITVRVQRDPDNADYAFFEVHDSGIGISEEQQRRLFDHFQQGDSSTSRRYGGT 587

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL I + ++   GG+  + S+ ++G      LP
Sbjct: 588 GLGLAICRQLVEIMGGEIGVDSQPKQGSRFWFRLP 622


>gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
 gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
          Length = 759

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            ++   ++G +A        + +   +    +       +D  +E +  +   +E RK A
Sbjct: 174 QIIHQRMSGAIAGLSGLQARLPWFASREFRALNFSVGVLEDTFSERDEREYALEEARKAA 233

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKS FLA+MSHE+RTP+N ++G +E+I    +    +E    Y   I +SG  LL
Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DEDQTMYAETISKSGSALL 289

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN+IL+ S+IEAG+ EL  +  +L   + + + +L  +A EKN+E+  + DPSL   +
Sbjct: 290 TIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECY 349

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIP 418
             D   +RQ++ N+  NAVKFT   G V++ V   +   +    IS+ D G GI E  + 
Sbjct: 350 EGDVGRIRQILTNVAGNAVKFTGK-GYVYIEVSGETDDDRTALRISVTDTGAGIPEDRLD 408

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +  +F Q   A     +G GLGL I+  ++   GG+  ++S+L +G      LP  R+ 
Sbjct: 409 RIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFAIDLPL-RIR 467

Query: 479 NFIPEDNHESTQYKC 493
              P+   ++  +K 
Sbjct: 468 PSQPKRAQDARDFKG 482


>gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 715

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/254 (39%), Positives = 141/254 (55%), Gaps = 3/254 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +    + E + A+ L  E ++ AE  N  KS FLA+MSHELRTPLN+I+GFS+++  +  
Sbjct: 459 QTCRDVTERKEAERLLHE-KQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVY 517

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L NE     +G+I RSG+HLLNLIN+ILDLS++EAG+ EL      L   +     +L
Sbjct: 518 GEL-NEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLL 576

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A  KNIEI  ++D  L+ + ADE    Q++ NL+ NA+KF+   G V V      G 
Sbjct: 577 SPIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAER-KGD 635

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++KD G GI E +   +   F Q         QG GLGL + + I+  HGG+    
Sbjct: 636 LVEITVKDKGIGIKEEDQCKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFN 695

Query: 460 SKLREGVEVIAILP 473
           SK+ EG      +P
Sbjct: 696 SKIGEGSTFAFTVP 709


>gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 975

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 150/255 (58%), Gaps = 1/255 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E R  AE  N AK+ FLA++SHELRTPLNAI+GFSE+++ E  GPL  
Sbjct: 706 ITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAIIGFSELMKHEIFGPLQP 765

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y+ Y+ D+H SG HLL LIN+ILD+S+ EAG  +L ES + +  +VR  + M+  RA 
Sbjct: 766 PAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLRMMDKRAS 825

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              I +   +   L+ + ADE+ +RQ++LNLLSNAVKFT  GG V VT     GRG  I 
Sbjct: 826 ANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTA-QVDGRGMVIE 884

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+   ++  V+  F Q    +    +G GLGLP+ ++++  HGG   + S    
Sbjct: 885 VIDTGIGMTPEDMDKVMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTMELHSIPDH 944

Query: 465 GVEVIAILPNTRVLN 479
           G  V    P  RV++
Sbjct: 945 GTTVTVTFPPERVID 959


>gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel]
 gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel]
          Length = 477

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 152/256 (59%), Gaps = 1/256 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                ++++         E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+I+ E+
Sbjct: 212 YRNTRMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSES 271

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +GP+ N  YKEYI DIH SG HLL+LIN+ILD S+ EA +  +      L  IV  C  M
Sbjct: 272 LGPIENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNM 331

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397
           +  RA++  + + + +      + AD K ++QVI+NLLSN++KFT   G V + V +   
Sbjct: 332 MIPRAEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLE 391

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +   I I D G GIA+ ++  V++ FGQ         +G GLGLP+++ ++    G F 
Sbjct: 392 DKLIIIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFK 451

Query: 458 IRSKLREGVEVIAILP 473
           I+S+   G  +    P
Sbjct: 452 IKSEPNSGTVITLTFP 467


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 10/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E + ++     T + AEE N AKS FLA+MSHE+RTP+N I+G + ++   T+   
Sbjct: 604 HEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLEN- 662

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 +Y+  I  S + LL +IN+ILD S+IE+G+ E+      L D + E I  L ++
Sbjct: 663 ---EQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQ 719

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397
           A EK +++       +  S+  D   +RQVI+NL+ NAVKFTA GG V V V        
Sbjct: 720 ATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGG-VVVRVDPFHIKDD 778

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  + D G GI    I  +  SF Q   +      G GLGL I+++++   GG   
Sbjct: 779 DVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMW 838

Query: 458 IRSKLREGVEVIAI 471
           + S+  EG      
Sbjct: 839 VESEDGEGSTFHFT 852


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 153/285 (53%), Gaps = 29/285 (10%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +L A+++      ++ R  AE  N AKS FLA+MSHELRTPLNAI+GF++V+  +     
Sbjct: 822  ELFAQIQQQSLELEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVMSRDI---S 878

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N+ ++ ++  I+RSGQHLL LIN++L++S+IEAGR +L+ S+  L  ++     +L+L+
Sbjct: 879  LNQEHQSHLDIINRSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLK 938

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
            A  K + +       +   + +DE  +RQV+LNLL NA+KFT   G+V + V   + +  
Sbjct: 939  ADFKELTLIFDCAQDVPQYITSDEVKLRQVLLNLLGNAIKFTQK-GKVTLRVRKINNKDY 997

Query: 401  -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       ++D G GIA  +I  + T F Q       A +G GLGL I+Q  +    
Sbjct: 998  GDPISTSLLFEVEDTGTGIAPEDIKQLFTPFVQARN--TDAHEGTGLGLTISQKFVKLMQ 1055

Query: 454  GQFLIRSKLREGVEVIA--------------ILPNTRVLNFIPED 484
            G+  + S + +G                    LP  RV++  P++
Sbjct: 1056 GEITVESVVGQGSTFRFNIQVDGAENVNIPNQLPKNRVIHIAPDE 1100


>gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
 gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
          Length = 1313

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 13/285 (4%)

Query: 210  SNVKILSCQAEKDDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            ++   +  + EK   + E     +  ++  R RAE+ N AKS FLA MSHE+RTPLNAI+
Sbjct: 786  THFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANRAKSEFLAGMSHEIRTPLNAII 845

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G S+++    +    +     Y+  +H +G+ L  LIN+ILDLS+IEAG  +L     SL
Sbjct: 846  GMSDLLAETRL----DGEQSGYLSVVHSAGETLQGLINDILDLSKIEAGMLQLDSVPFSL 901

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             D +R+   +  ++A  K +     +  ++   +  D   +RQV++NL+ NAVKFT  GG
Sbjct: 902  RDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLRQVLINLVGNAVKFTDSGG 961

Query: 388  RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             V + V              S+ D G GIA  ++ T+  SF Q   +      G GLGL 
Sbjct: 962  SVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFESFSQADSSTTRRYGGTGLGLA 1021

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNT---RVLNFIPEDN 485
            I++ +    GG+  + S + +G      +P     R    +P++ 
Sbjct: 1022 ISRHLAGMMGGEIGVESTVGKGSCFRFTVPFAISRRTEEPLPKEQ 1066


>gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 159/315 (50%), Gaps = 10/315 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            ++   ++  +A        + +   +    +       +D  +E +  +   +E RK A
Sbjct: 174 QIIHQRMSDAIAGLSGLQARLPWFASREFRALNFSVGVLEDTFSERDEREYALEEARKAA 233

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKS FLA+MSHE+RTP+N ++G +E+I    +    +E    Y   I +SG  LL
Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DEDQTMYAETISKSGSALL 289

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN+IL+ S+IEAG+ EL  +  +L   + + + +L  +A EKN+E+  + DPSL   +
Sbjct: 290 TIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECY 349

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIP 418
             D   +RQ++ N+  NAVKFT   G V++ V   +   +    IS+ D G GI +  + 
Sbjct: 350 EGDVGRIRQILTNVAGNAVKFTGK-GYVYIEVSGETDDDRTALRISVTDTGAGIPDDRLD 408

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +  +F Q   A     +G GLGL I+  ++   GG+  ++S+L +G      LP  R+ 
Sbjct: 409 RIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFTIDLPL-RIR 467

Query: 479 NFIPEDNHESTQYKC 493
              P+   +   +K 
Sbjct: 468 PNQPKRTQDVRDFKG 482


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I++    ++   +T +        K  FLA+MSHELRTPLNAILG +E ++ E  G L
Sbjct: 1372 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 1431

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   K+ +  I RS  HLL LIN+ILDL++IEAG  +L  +  S+  + +  I  ++ +
Sbjct: 1432 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 1490

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396
            A +K I I  +I  +L  ++ DE+ +RQV++NLL+NAVKFT   G++ + V        +
Sbjct: 1491 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 1550

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++ D G GI E ++  +   F Q   A+    +G GLGL + + I+  HGG  
Sbjct: 1551 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 1610

Query: 457  LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491
             + SK+  G + I  +P   +L     P  +  ++ +
Sbjct: 1611 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 1647


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1946

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 24/292 (8%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                +   +  +  +    + EK       E      ++ ++ AE  N AKS FLA+MSH
Sbjct: 1207 LLEAVADQVGIALAQAQLLEQEKHQRQQLAEQ-NVAMEKAKQIAEAANRAKSDFLATMSH 1265

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+NA++G + ++    +         E+   I  SG+ LL +IN+ILD S+IE+G+
Sbjct: 1266 EIRTPMNAVIGMTGLLLDTQLSH----EQAEFAETIRNSGEALLTIINDILDFSKIESGK 1321

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             EL E   +L   + E + +L  +A EK IE+    DP    ++  D   +RQ+++NLLS
Sbjct: 1322 LELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLS 1381

Query: 378  NAVKFTAIGGRVHVTVG-----------------WTSGRGQYISIKDNGPGIAEGEIPTV 420
            NA+KFT   G V V+V                           ++KD G GI    +  +
Sbjct: 1382 NALKFTHQ-GEVTVSVSSKRVSPQSLEQLSHRTNKEQQYEILFAVKDTGIGIPPDRLDRL 1440

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +F Q   +      G GLGL I++ +    GG+  + S++ +G      +
Sbjct: 1441 FKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIFYFTI 1492


>gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 708

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 141/311 (45%), Gaps = 17/311 (5%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------------ 224
            A+      D     +      F             + L    E   +            
Sbjct: 391 WALEERTFADSLANLVALAIEGFERQRAQQALSKAKQELELTVENRTVQLKSANKLLRFE 450

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           IAE + A+    E   +AE  + AKS FLA+MSHELRTPLNAI+G+SE++E         
Sbjct: 451 IAERKRAEVALQEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLEELASDEGLE 510

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   + I  I  +G+HLL LIN+ILDLS+IEAG+ EL   +  L D+V + I  L   A 
Sbjct: 511 DLLPD-IQKIRSAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAH 569

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
           + + ++       L  V+ D   +RQ++ NLLSNA+KFT   G V ++       +    
Sbjct: 570 KNSNKLEVSCCSDLGVVFTDLTKVRQILFNLLSNALKFT-ENGTVRLSATREMGSNSDWV 628

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G G++  +   +   F QG  +      G GLGL I++      GG   + S+
Sbjct: 629 YLCVADTGIGMSVEQQQCLFEVFNQGDASTTRKYGGTGLGLAISRRFCQMMGGDITVESE 688

Query: 462 LREGVEVIAIL 472
           L  G      L
Sbjct: 689 LGVGSTFTVHL 699


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 16/343 (4%)

Query: 153 ALSNFMLPYAVFLSF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +  + +   V          A +         L  + +  +      F+ +   +    
Sbjct: 335 FMFAYGVERIVLRPLNKLHNSADALARGEYDVDLPPAGSDEVGGLTRAFSGMARKIKSHT 394

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++     E+     ELE   S  +  R +AE  N AKS FLA+MSHE+RTPLN I G  
Sbjct: 395 RELEDRVRER---TGELEEKSSQLEAARDKAETANRAKSEFLANMSHEIRTPLNGITGMM 451

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++++   +        KEY+     S   L  L+++ILDLSR+EAGR  + E   ++ ++
Sbjct: 452 QLLQTTRLDS----NQKEYVDLALSSASRLTRLLSDILDLSRVEAGRMVILEEEFNVQEL 507

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            R    + +++A EK IE+   +DPSL   +  DE  ++Q++ NL+ N++KFT   GRV 
Sbjct: 508 CRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGDETRLQQILFNLVGNSLKFTRE-GRVR 566

Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +               I++ D G GIA  ++  +   F Q   +     +G GLGL I  
Sbjct: 567 INWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLFQPFVQEDGSSTRRHEGAGLGLSIVS 626

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            ++    G   + S   EG      LP    +   PE + +  
Sbjct: 627 RLVDLMHGTISVDSAPGEGTAFYIFLPLK--VPAAPEADQDDA 667


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I++    ++   +T +        K  FLA+MSHELRTPLNAILG +E ++ E  G L
Sbjct: 1372 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 1431

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   K+ +  I RS  HLL LIN+ILDL++IEAG  +L  +  S+  + +  I  ++ +
Sbjct: 1432 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 1490

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396
            A +K I I  +I  +L  ++ DE+ +RQV++NLL+NAVKFT   G++ + V        +
Sbjct: 1491 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 1550

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++ D G GI E ++  +   F Q   A+    +G GLGL + + I+  HGG  
Sbjct: 1551 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 1610

Query: 457  LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491
             + SK+  G + I  +P   +L     P  +  ++ +
Sbjct: 1611 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 1647


>gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 185/463 (39%), Gaps = 32/463 (6%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
             +   +   L     ++   VL       +  ++  +  +    +      L+L   + 
Sbjct: 185 ARMDRDYSVYLGVFFGLMSGLVLYN-LFLFFGVRDRSYLYYVCFVVFCTLLQLALMGALD 243

Query: 95  NSDIKIGEVYVWR-IWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATL--- 145
                   +            +   + + +  L           T   L ++        
Sbjct: 244 KYTPSAVLLNRINGNLSSSLTVMFAILFAMRILNANNFPSWVQRTANGLAVFFFLCAIGS 303

Query: 146 ---------LIALSISALSNFMLPYAVFLSFFPVVV---ALSTQAIMSMHVLDISLAGML 193
                    ++ LS S +S  +   AV+            L    + ++ V   +   M 
Sbjct: 304 VLNLKNIHIVLTLSGSVVSTLVCVLAVYNISKKHFGNYYFLIAMVVWTLGVGVSTFLYMG 363

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
               + FT  T  +    +  L        +    +         R+ A+ E+ AKS+FL
Sbjct: 364 LVPYTDFTVWTLPIVSVVLATLLSFTLAAQINDLRKQQVQSLLAARE-AQTESRAKSQFL 422

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A MSHE+RTP+N ++G ++++    +        K+Y+  I  SG+ LL +IN+ILD S+
Sbjct: 423 AQMSHEIRTPMNGVIGMADLLRQTKLDV----QQKQYLDIIVNSGRTLLTIINDILDFSK 478

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVI 372
           I AG+ +L    I    IVRECI +  L A+EK I + +   + +   ++ D   +RQV+
Sbjct: 479 IAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLKKDWKEGASPIIYGDSTRLRQVL 538

Query: 373 LNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NLLSNA+KFT  GG + + V      S     + ++D G GI+      + ++F Q   
Sbjct: 539 TNLLSNALKFTEKGG-ITLRVKPCLRDSEPYLQVEVEDTGIGISVENQQRLFSAFSQAEA 597

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I++ ++   GG+  +RS+   G      L
Sbjct: 598 STTRRFGGTGLGLAISKQLVELMGGEIGVRSEEGVGSIFWFTL 640


>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 146/276 (52%), Gaps = 12/276 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E  +    LE A   ++E  ++A+  N+AKS FLA+MSHE+RTP+
Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +          Y+  I  SG+ LL LIN+ILD S+IEAGR EL   
Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYR 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
             S  ++V+E +++LQ +A  +N+ +  +I P + ++   D   +RQV+LNL+ NA+KFT
Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFT 297

Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            +GG V + +              Y ++KD+G GI   +I  +   F Q   +      G
Sbjct: 298 EVGG-VAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL I + ++   GG+  + S++ +G      +P
Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 484

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 21/302 (6%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           LA+A    + +   L +S +++     E  D+ AELE  + ++ E + +AEE + AKS F
Sbjct: 175 LASATEEMSALNEQLEESMMELDLKNQELLDMNAELEKQQIIAHEAKIQAEEASRAKSDF 234

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN++LGFSE++  E  G   N    EY+ +I  SG+HLLNLIN+ILDLS
Sbjct: 235 LANMSHELRTPLNSVLGFSELLTDELFG-HLNAKQHEYVKNILFSGRHLLNLINDILDLS 293

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQV 371
           ++EAG+  L  S +   +++   + +LQ +A + ++ +  ++       + ADE+ ++Q+
Sbjct: 294 KVEAGKSVLEPSMVKFREVIAGTLTLLQEKALKHDVHLGLELPVDCDIELMADERKLKQI 353

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGW-------------------TSGRGQYISIKDNGPGI 412
           + NLLSNAVKFT  GG + VT                       +     I+++D+G GI
Sbjct: 354 MFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAGKYQPGERQPEAEDFVEITVEDSGIGI 413

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +IP +   F Q         +G GLGL + + ++  HGGQ  + S++ +G      +
Sbjct: 414 KREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTKRLVELHGGQVGVESEIGQGSRFYFAI 473

Query: 473 PN 474
           P 
Sbjct: 474 PL 475


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 8/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  +++A+    E +  AE  N AKS FLA+MSHE+RTPLNAI+G +E++    +   
Sbjct: 403 RDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKV- 461

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+  +  SG+ LL +IN+ILD S+IEAGR  + E    L D + + +  L  R
Sbjct: 462 ---AQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNR 518

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398
           A  K +E+   + P +   V  D   +RQVI+NLL NA+KFT  G     V V       
Sbjct: 519 AHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQ 578

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +  ++D G GIA+ +  ++  +F Q   +      G GLGL I+  ++    G+  +
Sbjct: 579 VTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWV 638

Query: 459 RSKLREGVEVIAIL 472
            S++ +G      L
Sbjct: 639 ESEVGQGSTFHFTL 652


>gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM
            1251]
 gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
            DSM 1251]
          Length = 1452

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 8/255 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I +    K    E ++ AE  N +KS FLA+MSHE+RTP+NAI+GFSE++    +  
Sbjct: 848  QREITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLESDL-- 905

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +E     +  I+ S + LL++IN+ILD S+IEA R E+     +L  I+ +  ++ + 
Sbjct: 906  --DEKQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQ 963

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
             A +K +E +  ++  +   V ADE  + QV++NLL NA+KFT  G  +V + +     +
Sbjct: 964  TALDKGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEK 1023

Query: 400  GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  S+ D+G GI++ +I  +   F Q   +I     G GLGL I+  +++  GG+  
Sbjct: 1024 SATLLFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEID 1083

Query: 458  IRSKLREGVEVIAIL 472
            ++SK   G      +
Sbjct: 1084 VKSKEGVGSTFSFEI 1098


>gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1342

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 8/242 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R+ A E    KS+FLA+MSHE+RTP+N +LG   ++    +        ++Y   
Sbjct: 651 ELVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQLTS----RQRDYAQT 706

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I RS  HLL +IN+ILD S++EAG  EL      L   +   + +L  +A+ KN+E+   
Sbjct: 707 IRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATL 766

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409
           +D  +   +  D   +RQV+LNL +NA+KFT  G     V +    +     + ++ D G
Sbjct: 767 VDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTG 826

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI+      +  SF Q   +      G GLGL I + ++   GG+  + S++ +G    
Sbjct: 827 VGISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGSTFW 886

Query: 470 AI 471
             
Sbjct: 887 FT 888


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 24/291 (8%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEE----------NLAKSRFLASMSHELRTPLNAIL 268
             E+      L  +++   + ++  E+           N AKS FLA+MSHE+RTP+N+I 
Sbjct: 775  TERTHAEDSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSIC 834

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            GFS+++    +    N   + +I  +  +   LL LIN+ILD S+IEA +  L+    +L
Sbjct: 835  GFSDLLLRSQL----NPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNL 890

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              +++E       +A+ K +++  +I+P +   +  D+  ++QV+ NL+SNA+KFT   G
Sbjct: 891  ETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTET-G 949

Query: 388  RVHVTVGWTSGRGQ--------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             V + V                  S++D G GI+      +   F Q   +      G G
Sbjct: 950  EVKIAVSQQGETEVNGGIIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTG 1009

Query: 440  LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            LGL I + I+   GG+  + S++  G      +P  +  +       E  +
Sbjct: 1010 LGLTICRRIVQLMGGEIHVDSEVDVGSTFWFTVPLQQPDHPASPATSEHPE 1060


>gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 982

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 174/460 (37%), Gaps = 28/460 (6%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP-MWSLITLAVYAANLSLGKKVMN 95
           ++     S    + +  L  +  +  G     +      W L+ +  Y A          
Sbjct: 236 MLRRKDRSTLFCALLCLLVAVRSSTTGEIIILDLFPGTGWHLLYVLQYLAFYLAVPVFGQ 295

Query: 96  --SDIKIGEVYVWRIWLLVGQIAIGLCWTLLT-------LVEPGTWTPEYLTIYKSATLL 146
               +  GE          G  A+     +          +        +  +Y +   L
Sbjct: 296 FIHLLYPGETSRKLTRFCWGLAALFSLTVIAAPVKVYSKFILWYELYTIFFLLYIALVAL 355

Query: 147 IALSI--SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +  ++     + + +  AVFL+   +   L    ++      +    +          ++
Sbjct: 356 VRAALKKREGAGYFILGAVFLALAAINDTLVANDVLDGPF--VIDFALFIFLFFQALVLS 413

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAEEENLAKSRFLASMSHEL 260
               ++   +     E +     LE          +  ++ A+  N AKS FLA MSHE+
Sbjct: 414 MRFSRAFATVEKLSGELEAYSRTLEQKVRERTSDLERAKREADTANRAKSDFLALMSHEI 473

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP++ ++G +E++    +    NE  +EY   I+ S + LL +I++ILD SRIE G+  
Sbjct: 474 RTPMHGLIGTAELLMETPL----NEEQREYAAVINESSEMLLAIIDDILDFSRIEEGKLA 529

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNA 379
           L E+      + +    +   +A  K +     +D ++  V   D   + QV+LNL+ NA
Sbjct: 530 LEEAGFDPRQVEKRVAGLFAPKAGLKGLLFTSAVDAAVPRVLRGDPLRLGQVLLNLVGNA 589

Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           VKFT   G V + V      G        ++D GPGI EG   ++   F Q   +     
Sbjct: 590 VKFTER-GEVSLRVFVEKREGDIAKIRFEVRDTGPGIPEGVRSSLFDPFTQADASTTRRF 648

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            G GLGL I + ++    G+    S+   G      +P  
Sbjct: 649 GGTGLGLSICRRLVELMNGEIGFASEEGRGATFWFTIPFK 688


>gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 623

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 6/269 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +K  L   ++       +    A+  N AKS FLA+MSHELRTPL  ++G S  + 
Sbjct: 214 QVQQQKQTLERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLL 273

Query: 276 L-----ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
                 E    L  E  K Y+  IH SG++LL LIN+ILDLS++E+G+  L  S  SL  
Sbjct: 274 RLYSQPENFPALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGK 333

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + ++C+  L+  A+EK + ++ K+        AD + +RQ++LNLLSNA+KFT  GGRV 
Sbjct: 334 MAQQCLHTLRDFAKEKGVNLYLKMKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVT 393

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +TV     +     +KD G GI++ +   +   F Q     +    G GLGL + + ++ 
Sbjct: 394 LTVSR-KDKMAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVE 452

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            HGG     S +  G +    +P   +++
Sbjct: 453 LHGGSIQFESVIGLGTKFTVYIPIQPLID 481


>gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 845

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 156/310 (50%), Gaps = 8/310 (2%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQAEKDDL 224
           +   + + ++    M+  +       +          +   L  +S+ ++    A  + +
Sbjct: 536 TLLMIGLVIAIAVWMAGLLTRRITGMISGIHAFQEGDLKRRLDARSSDEMGELAASFNRM 595

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              ++ +    D+ R++AEE +  KS FLA+MSHELRTPLN ILGF+E+++ E    L+N
Sbjct: 596 ADSVQDSFKRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE----LDN 651

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +++EY   I +SG+HLLNL+NEILDL++IEAG          L  +V EC+   Q+ A 
Sbjct: 652 PSHQEYATVIQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTAT 711

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +     +   L   +  D   +RQ++ NLLSNAVKFT   G++ +TV   +G+    
Sbjct: 712 AKGLGFDLNVAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQ-GKISLTVRP-AGQEIAF 769

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI    +  V   F Q    +     G GLGL + + +  + GG+  + S + 
Sbjct: 770 AVSDTGAGIPPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVG 829

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 830 VGSTFTVYLP 839


>gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1613

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 12/292 (4%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                +   L  +       + EK  L    E         +K A+  N AKS FLA+MSH
Sbjct: 1071 LIEAVAAQLGIAIAHARLLEGEKRRLKQLSEK-NKALGRAKKEADIANKAKSEFLANMSH 1129

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+NA+LGFS++++      +     KEY+  I  SG+ LL LIN+ILDLS+IEAG+
Sbjct: 1130 EIRTPMNAVLGFSDLLQD----IITEPEAKEYLEAISASGKTLLRLINDILDLSKIEAGK 1185

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
              L    I+L  ++ E   + + +A EK + +  +IDP L   V  DE  +RQ++LN++ 
Sbjct: 1186 LTLHYEPINLRILIAEIEQIFRHQATEKGLNLKSEIDPKLPCGVELDEVRLRQILLNVVG 1245

Query: 378  NAVKFTAIG-GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA KFT  G  ++ V               IS++D G GI+      +  +F Q      
Sbjct: 1246 NAFKFTDTGQIKITVNCRANPEHSEKIDLKISVEDTGIGISPDNQTKIFNAFTQSEGQSN 1305

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVLNFIPE 483
                G GLGL I Q ++   GG   ++S+  +G +     P    V    PE
Sbjct: 1306 RKYGGTGLGLAITQRLVQMMGGTVHLQSQQGQGSKFTFYFPKVVAVNQLAPE 1357


>gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 15/325 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
               +  P V  +   +         ++       L      +  L +           +
Sbjct: 81  LAMRAAAPEVPIVILTSHDDSDFAFSTIEAGAQDYLVKGVIGSDSLKRVIRHARGRFKLE 140

Query: 222 DDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +L+        A   ++E  + A+  N+AKS FLA+MSHE+RTP+N ++G + ++  E 
Sbjct: 141 MELMESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAED 200

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +    ++  + Y   I  SGQ LL LIN+ILD S+IEAGR EL     S  ++++E  ++
Sbjct: 201 L----SDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVL 256

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           LQ +A  +NI +  ++ P + +V   D   +RQV+LNL+ NA+KFT IGG V + +    
Sbjct: 257 LQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGG-VAMELSPAP 315

Query: 398 GRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                     + ++KD+G GI   ++  +   F Q   +      G GLGL I + +M  
Sbjct: 316 ADPAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMEL 375

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  + S+  +G      +P   
Sbjct: 376 MGGEIGVESEEGKGSTFWFTVPLRP 400


>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1120

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 139/279 (49%), Gaps = 6/279 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           V   + + E    I  L+ ++    + ++ AE  N AKS FLA+MSH++RTP+NA+LG  
Sbjct: 698 VDGRTVRLEVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMV 757

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++   ++ P        Y+  I R+G  LL+LIN+ILDLS+IEAG+ +L     +L + 
Sbjct: 758 ELLGESSLDP----EQSHYLKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAET 813

Query: 332 VRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           V   + +L+ +A EK +++      P    V  D + +RQ++LNLL NAVKFT   G V 
Sbjct: 814 VEHVMDILRHKASEKGLQLQTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQ-GSVS 872

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +T+           + D GPGIA      +   F Q          G GLGL I   ++ 
Sbjct: 873 LTLQQQPDGQYSFQVADTGPGIAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVT 932

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              G   ++S+L  G      LP    +   P++    +
Sbjct: 933 AMRGTLWLKSQLGHGSIFYFTLPLATAMEPAPDEVSPQS 971


>gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 736

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 10/312 (3%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              P+++   T   M+   LDIS       +      +       ++K+     E     
Sbjct: 201 FISPILLLTKTAKEMAGGNLDISEELAAIDSNDEIGLLASTFKDMSIKLDKSYKELKGFS 260

Query: 226 AELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             LE          +  +K+AE+    KS FLA+MSHE+RTP+N ILG + +     +  
Sbjct: 261 ENLEQKIQIRTKELEIEKKKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLALETDL-- 318

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  + YI  I  S + LL +IN+ILD S+IEAG+  + ++  ++ +++   I +++L
Sbjct: 319 --NDKQRNYIQKIDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVEL 376

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EKN+++    D ++S   + D   +RQ+++NLL NAVKFT   G V +++   S   
Sbjct: 377 KADEKNLKLTVNYDKNISKYFYGDSLRLRQILINLLGNAVKFTDS-GEVSISLKKISKDR 435

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G G+++ +   +  SF Q   +I     G GLGL I++ ++   GG+  + S
Sbjct: 436 FRFEVSDTGIGLSQEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVES 495

Query: 461 KLREGVEVIAIL 472
           K   G + I  +
Sbjct: 496 KENIGSKFIFEI 507


>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
 gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
          Length = 632

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 9/324 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          ++  L     + ++ L +    +                +     +S
Sbjct: 151 FLLTTEAIKILVLIIGVLWVAFRLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             AEK +  + +++  ++  +  R RAE  N  KS FLA+MSHE+RTP+N I+G S ++ 
Sbjct: 211 VLAEKYNRSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLN 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +   KE++  I  S   L+ +I++ILD S++EAG+ EL  ++  L +++ + 
Sbjct: 271 DTDL----DPQQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++A++KN+++   IDP L   V  D   ++QV+ NLLSNA+KFT  G  ++ V +
Sbjct: 327 ISLHSVKAKQKNLQLLSDIDPHLPMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVAL 386

Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
               G   +I   + D+G GIA+     +   F Q   +      G GLGL IA  ++  
Sbjct: 387 SRLDGETAHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNL 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG+  + S+L  G      +P  
Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPVA 470


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 152/319 (47%), Gaps = 12/319 (3%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            +F  ++     Q+++++ +             +            ++ +L   AE     
Sbjct: 807  AFRALLEPQGIQSLITIPLNYGEQCFGFVGFDA--VRSLKIWADDDLSLLRVLAELFTNA 864

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                  ++   E R  +E  N AKS FLA+MSHE+RTP+N ++G + ++   ++    ++
Sbjct: 865  EVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSL----SD 920

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + Y   +  S   LL LIN+ILD S+IEAG++EL      L +++ +   ++ +RA++
Sbjct: 921  EQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARD 980

Query: 346  KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RG 400
            K +E      P +   +  D   + QV+ NL  NA+KFT   G V V+V   SG      
Sbjct: 981  KELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQ-GEVAVSVALVSGSAQEDL 1039

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               S++D G GI E +I  + +SF Q   +      G GLGL I++ ++   GG+  + S
Sbjct: 1040 LRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISRQLVELMGGEIGVSS 1099

Query: 461  KLREGVEVIAILPNTRVLN 479
            +  EG E    +P  + L 
Sbjct: 1100 RENEGSEFWFTIPFKKQLP 1118


>gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction
           histidine kinase [uncultured marine group III
           euryarchaeote SAT1000-53-B3]
          Length = 752

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 179/460 (38%), Gaps = 30/460 (6%)

Query: 39  TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDI 98
            +        +P   L   L+A +               + +      +++    +   +
Sbjct: 291 LVFWGVQNATAPAGDLLNGLLAGLVAVTASANWVTPIGAVCIGAGGGLVAMYATRLLERL 350

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSATLLIALSIS 152
           ++ +        L G I   L        E  T             + +    L  +   
Sbjct: 351 ELDDPVGAIPVHLAGGIFGTLVLPFFAAEEHLTGNSNLNNYTDNPRVNQFIAQLTGIIAI 410

Query: 153 ALSNFMLPYAVFLSF--------------FPVVVALSTQAIMSMHVLDISL-----AGML 193
            L  F + Y +F +                 + +A    +   + +L I         + 
Sbjct: 411 GLYTFSVSYILFKTINHYNPLRVSQEAEDIGLNIAEHDSSSDQIDLLKIMQYQNDTGDLS 470

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                        +      ++S   E D +   +   K       ++A+  N AKS FL
Sbjct: 471 VRGPEDLFTEAGQIGYHYNILMSSLEESDKI---MRKQKDSLKVAMQKAQTANKAKSDFL 527

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHELRTPLNAI+G+SE++  E       ETY E +  IH SG HLL LIN+ILDLS+
Sbjct: 528 ANMSHELRTPLNAIIGYSEMLIEEADDDGL-ETYSEDLAKIHSSGDHLLTLINDILDLSK 586

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAG+ +L        +++++     +    +   +   K       +  D+  +RQ++ 
Sbjct: 587 IEAGKMDLHIEEFDFTNLLKQIEATARPLVDKNKNKFVIKCKTKKLKLKNDQTKVRQILF 646

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           N+LSNA KFT   G + + +           + D G G++E ++  V   F Q   +   
Sbjct: 647 NMLSNAAKFTKK-GTITLQIKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEFTQAESSTSK 705

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              G GLGLPI++ +    GG+  ++SK  +G     I+P
Sbjct: 706 DYGGTGLGLPISKKMTEMMGGKMEVKSKEGKGTTFSIIIP 745


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  302 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 10/274 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            + +   +  +    + R+ AE  +  K+ FLA+MSHE+RTPLN I G  ++++  ++  
Sbjct: 409 REDLTAWKKTEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKETSLDM 468

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 KEY+    +S   L  L+++ILDLSRIEAG   + +     +++      +  +
Sbjct: 469 ----EQKEYVDLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAV 524

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWT 396
             + K++ +           +  DE  ++Q++ NL+ NA+KFT  GG V V+     G  
Sbjct: 525 TTRNKHLSLECIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGG-VQVSWSLYAGDD 583

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           + +   I+++D G G+ +  +  +   F Q   +     QG GLGL I + ++    G  
Sbjct: 584 TEQQVRITVQDTGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNI 643

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            ++S   +G      LP     +       +S  
Sbjct: 644 SVKSVPGQGSTFYVDLPLKAAEDSDVSRQEDSQD 677


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1369

 Score =  302 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 148/336 (44%), Gaps = 28/336 (8%)

Query: 175 STQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
             + +++  +    +      A     +  ++  L             +   I E +  +
Sbjct: 557 LLRRLVAREIPGYQMEKRYIHASGRIVWVLLSVSLVTGENDEPLYVIAQVQDITERKRIE 616

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E +++AE  + AKS F+A+MSHE+RTP+N ++G +E++    + P      +EY  
Sbjct: 617 EELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTP----EQREYAR 672

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SG+ LL ++N+ILD S+IEAGR  L      +   V E + +L  RA  K +E+  
Sbjct: 673 TIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELIC 732

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------ 399
            I+P +   +  D   +RQV+ NL+ NA+KFT   G V V+   +               
Sbjct: 733 FIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSASLSKEEKKKSAPAGERGG 791

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD+G GI E +   +  +F Q   +      G GLGL I++ ++   GG+  
Sbjct: 792 EIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIG 851

Query: 458 IRSKLREGVEVIAI----LPNTRVL--NFIPEDNHE 487
           ++S  +EG          LP          P +  E
Sbjct: 852 LKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEGE 887


>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
 gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
          Length = 632

 Score =  302 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 9/324 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          ++  L     + ++ L +    +                +     +S
Sbjct: 151 FLLTTEAIKILVLIIGVLWVAFRLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             AEK +  + +++  ++  +  R RAE  N  KS FLA+MSHE+RTP+N I+G S ++ 
Sbjct: 211 VLAEKYNRSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLN 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P      KE++  I  S   L+ +I++ILD S++EAG+ EL  ++  L +++ + 
Sbjct: 271 DTDLDP----QQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++A++KN+++   IDP L   V  D   ++QV+ NLLSNA+KFT  G  ++ V +
Sbjct: 327 ISLHSVKAKQKNLQLLSNIDPHLPIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVAL 386

Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
               G   +I   + D+G GIA+     +   F Q   +      G GLGL IA  ++  
Sbjct: 387 SRLDGETAHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNL 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG+  + S+L  G      +P  
Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPVA 470


>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
 gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
          Length = 998

 Score =  302 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-----RKRAEEENLAKSR 251
           L +++       +  +  LS    +     E +V +   D+      ++ AE+ N AKS 
Sbjct: 451 LGYYSERARVQTRDEIGELSKSFNEMVNAVETDVIRREKDKQTVSVLKEEAEQANKAKSA 510

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY---IGDIHRSGQHLLNLINEI 308
           FLA+MSHELRTP+NAI+G+SE++  +         ++EY   +  I+ +G+HLL LIN+I
Sbjct: 511 FLANMSHELRTPMNAIIGYSEILTEDATDN----QHQEYIPDLKKINSAGKHLLQLINDI 566

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAG+ EL    I+   + +E          +    +    D S+  +  D   +
Sbjct: 567 LDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDESIQGITGDSVKI 626

Query: 369 RQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +Q++ NL+SNA KFT   G + +             I ++D G GI + +   V   FGQ
Sbjct: 627 KQILFNLISNAAKFT-ENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDKAAKVFEEFGQ 685

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              +      G GLGL + +      GG   + S++ +G      +P     +    ++ 
Sbjct: 686 ADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIPKNISTSESITEDV 745

Query: 487 ESTQ 490
           ++ +
Sbjct: 746 KNNE 749


>gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  302 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 190/459 (41%), Gaps = 18/459 (3%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           ++   D+  + L V+    ++    L ++    +     +      W+LI L+     + 
Sbjct: 2   ARHSVDKYRLALPVDINRSLA-FRALHIMSAGLVFGVNVRWTSAVTWTLIVLS---IEVW 57

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
                         +      L    +   + W  + ++           +   A L   
Sbjct: 58  EALDAAKRGKSGAPLRRSGRTLRRIAL--NIVWVTMPVILWLMGDFASRIV-ALAMLTTH 114

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L+++   +F    A      P  VA     +    +  + LA + A       Y+   + 
Sbjct: 115 LAVALSYSFNTSRAAVAIGLPPAVAFFFLPVALGGLSGLKLAAVAACFGFCLFYLAIIVE 174

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++       +  + +L+ + EV ++ ++         + AKS FLA MSHELRTP+N +L
Sbjct: 175 QNRANARILRGAQAELLEQREVLRAQTEAAN----AASQAKSSFLAMMSHELRTPMNGVL 230

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +  + L  +          ++  + RSGQ L+ ++N++LD+S+IEAG+ EL      L
Sbjct: 231 GMAHALTLSKLDSH----QVSHLDMLLRSGQGLMTILNDLLDISKIEAGKLELEIIPFDL 286

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            ++ R+   + +  A  K + +  ++       V  D   +RQV++NL+SNA+KFT+  G
Sbjct: 287 SELGRQVEDLWRDAAHIKGVSLVCEVAFSGPHWVSGDPTRLRQVLINLVSNALKFTSQ-G 345

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V +++  +      I++ D GPGI   +   +  +F Q   +I     G GLGL I + 
Sbjct: 346 EVRLSIWRSEDGLCQIAVTDTGPGIPVNQQALLFQAFSQADASITRKFGGTGLGLAICKQ 405

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           +++   G+  + S+   G      LP       + E   
Sbjct: 406 LVSLMDGRIDLDSREGVGSTFTVSLPL-PTAEAVQEAEQ 443


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             +A  +++I  L+     +   ++ AE  + AKS F+A+MSHE+RTP+N I+G +++   
Sbjct: 1052 LKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLD 1111

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              +    N   +EY+  +  S   LL +IN+ILD S+IEAGR EL +S  SL  I+ E +
Sbjct: 1112 TEL----NAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETL 1167

Query: 337  IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              L  R+ +K +EI   I P     +  D   +RQ++ NL+ NA+KFTA  G V +TV  
Sbjct: 1168 KTLAWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAE-GEVSLTVKL 1226

Query: 396  TS--GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        S+ D G GI   ++  +  +F Q   +I     G GLGL I+  ++  
Sbjct: 1227 EDITNGEVTLAFSVADTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVEL 1286

Query: 452  HGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHE 487
             GG+    S   +G     I   P  +     P +N +
Sbjct: 1287 MGGKLKAESIPGKGSRFDFIAKFPLGQ----APTENSK 1320


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 13/363 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIM 180
             L L          +      TL  A     +++  L         P+  ++ + + + 
Sbjct: 140 GGLYLEITLAPLYWQILWQVIITLTAAAFALLIAHLRLQRLNRSILDPLNDLSTNMEHVT 199

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETR 239
           S     I       T L+  +    ++ +   +  +  A+  D L  E+    +     +
Sbjct: 200 SKADYTIRTESSAITELNTLSKGFNNMLEMIQERDAKLADHLDHLEEEVTKRTAELVLAK 259

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + AE  + AKS FLA+MSHE+RTP+N ILG +E++    +    N   + +   +  SG+
Sbjct: 260 ESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQL----NRDQQRFAETVQSSGR 315

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI--FQKIDPS 357
           HLL +IN+ILD S+IE+   EL      L+ ++ + + M    A +K +E+         
Sbjct: 316 HLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNR 375

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
              V  D   +RQ+  NL+SNA+KFT+  G V +        G      I ++D G GI 
Sbjct: 376 AFMVRGDSFRLRQIFANLISNAIKFTSQ-GEVVIRTQLCEAAGSRVNLRICVEDTGIGIP 434

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +   F Q   +      G GLGL I + ++   GG   I S   +G +    L 
Sbjct: 435 PEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLE 494

Query: 474 NTR 476
             +
Sbjct: 495 LEK 497


>gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 887

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 3/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E +  +    + +  AE  N A S FLA+MSHELRTPL AI+GFSE++  E  G  + 
Sbjct: 313 LSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELMLGEATGEFD- 371

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++++G I  SG+HLL+LIN ++DLSRIEAG+ +L     SL DI  +   +    A 
Sbjct: 372 ELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADTKSISSPLAL 431

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +KNI +   ++     ++AD    +Q++ NL+SNA+KFT  GG V V VG  S     ++
Sbjct: 432 KKNISMDFNVESDFL-IYADRTRFKQIMYNLVSNAIKFTPAGGSVEV-VGRRSENRIRVT 489

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI++ EI  +   F Q + A+    +  GLGL ++++ +  HGG+  + S+  +
Sbjct: 490 VSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRIWVESEPGK 549

Query: 465 GVEVIAILPNT 475
           G      +P  
Sbjct: 550 GSTFTFEVPVE 560


>gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
 gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
          Length = 621

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 3/269 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              ++++ +L   A+    + + E A       +   E+    K+ F+A+MSHELRTPLN
Sbjct: 348 RWDQNDIYMLLVIADSVGAVIKKEKANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLN 407

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS+++     G +N +  K Y   I + G+HLLNLIN+ILD S+I + + EL+   
Sbjct: 408 AIIGFSQLLSSNRYGNMNEKELK-YSFSILKGGKHLLNLINDILDFSKIHSNKMELNIET 466

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I+L +I  E    +   A +K I +       +  +  D+    Q++ NLLSNAVKFT  
Sbjct: 467 INLKEICDEIKTFITPLATKKGITVEYNNKFDI-DINLDKLKFIQIMSNLLSNAVKFTPD 525

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V V + + +     +S+ D+G GI E ++  +   F Q   +      G GLGL + 
Sbjct: 526 KGKVSVDIDFVAE-YVQVSVTDSGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALV 584

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  +  HGG   + S+L +G      +P 
Sbjct: 585 KEYVEMHGGTIWVESELGKGSTFTFTIPV 613


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 138/301 (45%), Gaps = 24/301 (7%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +                 I E +  +    E +++AE  + AKS F+A+MSHE+RTP+N
Sbjct: 286 RVGPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMN 345

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G +E++    + P      +EY   I  SG+ LL ++N+ILD S+IEAGR  L    
Sbjct: 346 GVIGMAELLLDTPLTP----EQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIP 401

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             +   V E + +L  RA  K +E+   I+P +   +  D   +RQV+ NL+ NA+KFT 
Sbjct: 402 FEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTE 461

Query: 385 IGGRVHVTVGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             G V V+V  +                    +KD+G GI E +   +  +F Q   +  
Sbjct: 462 E-GEVVVSVSLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTT 520

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVL--NFIPEDNH 486
               G GLGL I++ ++   GG+  ++S  +EG          LP          P +  
Sbjct: 521 RRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEG 580

Query: 487 E 487
           E
Sbjct: 581 E 581


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1177

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 132/269 (49%), Gaps = 9/269 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I +    +    + ++ AE  N +KS FLA+MSHE+RTP+N ++G  E++    +   
Sbjct: 766  RDITQRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLETPL--- 822

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N     YI  +  +G  LL LI+ ILDLS+IEAGR  L E A  L  +V       +L+
Sbjct: 823  -NAEQTRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQ 881

Query: 343  AQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            A   N+ +  +I P L    V  D   +RQV+ NLL NA+KFT  GG V + +   + + 
Sbjct: 882  ALNHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGG-VSLHLSLDANQH 940

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +  + D G GIA  ++  +  +F Q   ++     G GLGL I +      GG+  + S
Sbjct: 941  IHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVES 1000

Query: 461  KLREGVEVIAILPNTRVLNFIPEDNHEST 489
               +G      LP   VL+  P     +T
Sbjct: 1001 IEGQGSTFHMTLPL--VLSHTPLHETPTT 1027


>gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 892

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 5/246 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +     +++ AE+ + AKS FLA+MSHE+RTP+N ILG  ++++ + +    NE  KEY+
Sbjct: 514 EQALGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQPL----NEKSKEYL 569

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                S + L  +IN+ILD S+IEAG+  L        +++      L ++A +KNI + 
Sbjct: 570 KKSLYSTRALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQATDKNIYLK 629

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             ID        D   +RQV LNL+SNA+KFT+ GG V VT   T        I D G G
Sbjct: 630 FVIDIEHKHWVGDPVRLRQVFLNLISNAIKFTSQGG-VTVTFRLTDESRICCCISDTGIG 688

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+E  I  +   F Q   +      G GLGLPI +S++    G+  + S+L  G +    
Sbjct: 689 ISEQAIDRLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSGSQFYVY 748

Query: 472 LPNTRV 477
           LP  + 
Sbjct: 749 LPLKQA 754


>gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3]
 gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A:Hpt [Shewanella piezotolerans WP3]
          Length = 935

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++    F L   V     P+   +   A +    LD  L G L 
Sbjct: 184 HRAAVAAFIIVLIGVQLNLFFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRLTGNLI 240

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 241 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRALEAS 300

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I RS  +LL++IN
Sbjct: 301 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 356

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     SL +++ E + ML   A+EK I++   +DP +   V  D 
Sbjct: 357 DILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVIDVDPRIPEDVTGDA 416

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
               QVI NL+ NAVKFT  G  ++ + +   +    ++   I D G GI   ++ ++  
Sbjct: 417 MRFSQVITNLVGNAVKFTDSGSVQLKMQLEEIADGSVHVRTEIIDTGIGIDADKLASLFQ 476

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S+ ++G      LP 
Sbjct: 477 AFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTFWFSLPL 528


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 13/364 (3%)

Query: 122 TLLTLVEPGTWTPEYLTI-----YKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALS 175
             ++L+ P       + +        + LLI + + ++   +       L       A  
Sbjct: 186 GAISLIMPMDIFLHGIKLNVYRHLSFSLLLIGVIVISMYLLVTRLVTRSLGELKGATAQV 245

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAEL-EVA 231
            Q    + +  I   G +         +   L   +++    +  +  +  L+ E   + 
Sbjct: 246 GQGDFDIDLNRIKAQGEIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIK 305

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +    +  E N  KS FLA MSHELRTPL +++ F++++  +    L  E  ++ +
Sbjct: 306 QDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE--RQNL 363

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  + Q+LL LIN ILDL++IEAGR EL    + + D++     ++   A++K I   
Sbjct: 364 KYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWE 423

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGP 410
             +DP +S + AD + +R+VI NL+ NA+KFT   GRV + V          I + D G 
Sbjct: 424 ISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRVIDTGI 483

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   E   +   F Q   +      G GLGL +A+ ++  H G+  + S+L +G   + 
Sbjct: 484 GIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVV 543

Query: 471 ILPN 474
           +LP 
Sbjct: 544 LLPK 547


>gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 1070

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 7/255 (2%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             D+ A++E A +  +  R+RAE  + AKS+FLA+MSHE+RTPLN +LG ++V+ +  + 
Sbjct: 662 HLDVSADIEQA-AALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQVLHMTEL- 719

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    ++  I  SGQ L +LI++ILD+S+IE+G  EL + A  + ++V     + +
Sbjct: 720 ---TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVAMVSDITR 776

Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           LRAQEK + +   + P ++ V   DEK +RQ+++N++ NAVKFT   GRV + +   +  
Sbjct: 777 LRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDS-GRVSIDIRAGAED 835

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I D GPGI    + ++   F Q   +I     G GLGL I   ++   GG+  + 
Sbjct: 836 VVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGEIGVE 895

Query: 460 SKLREGVEVIAILPN 474
           S   EG      LP 
Sbjct: 896 SVPGEGSTFWFKLPL 910


>gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 726

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 98/255 (38%), Positives = 144/255 (56%), Gaps = 2/255 (0%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I E +  +      ++ AE  N AKS FLA+MSHELRTPLN+I+GFS+++  +  
Sbjct: 469 ETGVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVY 528

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G LN     + +G+I  SG+HLLNLINEILDLS++EAG +EL  S   L ++  E   M+
Sbjct: 529 GELNL-KQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMI 587

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A  K ++I  +ID +LS V+AD++ + QV+ NL++NAVKF+   G V V        
Sbjct: 588 FPFATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKA-VQMDG 646

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D+G GIA  +   +   F Q   +     QG GLGL + + I+  HGG     
Sbjct: 647 FLKITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFE 706

Query: 460 SKLREGVEVIAILPN 474
           S++ +G      +P 
Sbjct: 707 SEVGKGSVFGFSIPL 721


>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 932

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 24/346 (6%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
            T     +      +I L+I+ L   +     +    P+   +      S    +  L  
Sbjct: 236 GTAGATVLQIILAFVIILAIAVLIRILFTQVTY----PIRDYILKLKDFSFDDEEFRLVP 291

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                L+        L++S    L  +          + A+      R  A++ N AKS 
Sbjct: 292 KGTVELNMLAENFNELYRSFHNELVRR----------KKAEETMKAARDEADKANRAKSE 341

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLASMSHE+RTP+N+I+G+  +++   + P      +EY+ +I  + ++LL +IN+ILD 
Sbjct: 342 FLASMSHEIRTPINSIIGYQYLLKNSVLSP----KQREYVENIGLAAKNLLAIINQILDF 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAGR  L E   ++ D++ E +I++ + A+ K IE+  K+D  +   +  D   ++Q
Sbjct: 398 SKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V++NL+SN +KFT   G + + V              S+ D G GI++ +   +  +F Q
Sbjct: 458 VVMNLVSNGIKFTHE-GYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLFQAFTQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G  +      G GLGL I + ++    G+  + S++ +G      L
Sbjct: 517 GDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 397

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  ++     +K AE  N AK+ F+ +MSHELRTPLN+++GFS+++     GP+N 
Sbjct: 127 INGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPMNT 186

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+ +I  SG++LL +IN +LD+SR+EAG   L    + +  ++ E  + L   A 
Sbjct: 187 -KQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRMNLLSPAS 245

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K I +  KIDPS+ +V AD   +RQ++ NL+SNA+KFT   G+V ++          + 
Sbjct: 246 VKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVISAC-KKEGVLEVK 304

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + DNG GI+E     +   F Q   +      G GLGL I ++ +  HGG   + S++ +
Sbjct: 305 VSDNGIGISEDSYEKIFMPFTQADSSAARGYGGAGLGLFIVRNFVDLHGGDISVNSEVGK 364

Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488
           G      +P       + E+  + 
Sbjct: 365 GSTFTFTIPAKPENTSLQENETKK 388


>gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 773

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 111/272 (40%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E         ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ Y+EY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDILDMSKIEAGRFTLDRK 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  I+ E +  L  +AQEKNI +   I P L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 623 NIDLEPIISEAVRTLTPQAQEKNISVSTNIAPEL-HAEVDGRAMKQIFLNLISNAVKFTP 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG ++V   +         IKD G GI +  I  +   F Q    +     G GLGL I
Sbjct: 682 SGGSINV-CAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVENQLTKTHTGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V   +P  +
Sbjct: 741 SRSLLELHKGKLEIISKEMKGTTVTITMPIKQ 772


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 147/276 (53%), Gaps = 12/276 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E  +    LE A   ++E  ++A+  N+AKS FLA+MSHE+RTP+
Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +          Y+  I  SG+ LL LIN+ILD S+IEAGR EL   
Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
             S  ++V+E +++LQ +A  +N+ +  +I PSL + V  D   +RQV+LNL+ NA+KFT
Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFT 297

Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            +GG V + +              + ++KD+G GI   +I  +   F Q   +      G
Sbjct: 298 EVGG-VAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL I + ++   GG+  + S++ +G      +P
Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 136/262 (51%), Gaps = 10/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + EL  +     + ++ AE     K +FLA+MSHE+RTP+N I+G  +V+    +   
Sbjct: 542 RDVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETEL--- 598

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +++ +EY+  I  S + LL ++N+ILDLS++EAG+  + +    L ++++  + + + +
Sbjct: 599 -DKSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQK 657

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A E N  +  + DP +   +  D   + Q++ NL SNA+KFT   G V + + W      
Sbjct: 658 AAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFT-QNGNVIIRIQWEGQDEK 716

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GI+E     + TSF Q  I+ K A  G GLGL I++ ++   GG+  
Sbjct: 717 TQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIG 776

Query: 458 IRSKLREGVEVIAILPNTRVLN 479
           + SKL EG      LP    + 
Sbjct: 777 LTSKLGEGSVFWFTLPAGLAVE 798


>gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 6/294 (2%)

Query: 184 VLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           + D      L         +   L    + + +    +   +++   +    +   +  K
Sbjct: 269 LPDWVKLTGLVAGTVLIMSLGGSLLLKRRVDARTRELRQINNEMDDRIRSRTAELADAMK 328

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +A   +  KS FLA+MSHELRTPLN+I+GF+ ++  E  GPL NE  K+ +G +  S +H
Sbjct: 329 KARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPL-NEEQKKQMGMVQTSARH 387

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN++LD+S+IEAG+  L+     L   + +   ++   A++  I++  +I   +  
Sbjct: 388 LLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKNEIDLKVEIGKDVGD 447

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D++ + QV+LNLL+NAVKFT   G V +    T      IS+ D G GI   ++  +
Sbjct: 448 MTTDQRRLEQVVLNLLNNAVKFTET-GSVSINC-RTDTGQYVISVADTGIGIQPEDVAEL 505

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    +    +G GLGL I++ ++A  GG   ++S+  +G      LP 
Sbjct: 506 FQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGSTFTVRLPK 559


>gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 931

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/462 (22%), Positives = 194/462 (41%), Gaps = 27/462 (5%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLV-----ANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           +   + + V        +  L  +L      A +             ++      AA   
Sbjct: 70  EAFHLPVQVNYYLPTVLLSMLAAILASFGALAVVSRATMGTLRALGGAVFMGCGIAAMHY 129

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI---YKSATL 145
           +G   M         Y     +++  + + +  + + L+    +  +  T       + +
Sbjct: 130 IGMAAMRLPAMCVYSYG----IVLLSVVLAIAISFIALLFAFKFRKDASTWNWRRFGSAI 185

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALS-TQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L+ L+I  +    +    F         L        ++   I +  +    +   T + 
Sbjct: 186 LLGLAIPIMHYVGMAAVSFHLMPGKDSNLVNVVRASDLNTAGIVIITLALLGIVILTSVL 245

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +      L    ++  +I     A++   E  + AE  + AKS FLA+MSHE+RTPL
Sbjct: 246 DRRYSLQAVQLELSEQRYRMIE----AEAAGRERVRAAEASSQAKSEFLANMSHEIRTPL 301

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+G +++     +     +  ++Y+  +  SG  LLN+IN+ILD S+IEAG+ EL E 
Sbjct: 302 NGIIGMTDLALETEL----TQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIELEEI 357

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
             +L + +   +  L LRA EK +E+   + P ++ V   D   +RQ++LN++ NA+KFT
Sbjct: 358 DFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAIKFT 417

Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +  G + + V            +  I D G GIA  ++ T+  SF Q   +      G G
Sbjct: 418 SK-GEISLKVKSDLIEEKKSILHFIITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTG 476

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           LGL I++ ++   GG+  + S++  G +    +P   V   I
Sbjct: 477 LGLTISRCLVEMMGGKLWVESEVGVGSQFHFTIPMKYVDTPI 518


>gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium
           HP15]
          Length = 902

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 151/317 (47%), Gaps = 26/317 (8%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +    +  F Y    L +   + +  +        EL  AK  ++   + AE  +LAK
Sbjct: 494 VLIAILVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAREAEAASLAK 553

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTP+NA++G+S+++         +   + Y+  I    + LL LIN+IL
Sbjct: 554 SEFLANMSHEIRTPMNAVIGYSDLLSNSV----TDPQQRNYLDAIRAGSRSLLMLINDIL 609

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           DLSRIEAG+  L  SA+S+  ++ +   +  LRA+E+ I +   +D  +  ++  DE  +
Sbjct: 610 DLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQGITLEVSVDSRMPGAMMLDETRL 669

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------------------YISIKDNGP 410
           RQV+ NL+ NA+KFT  GG V V       + +                   +++ D+G 
Sbjct: 670 RQVLFNLVGNAIKFTHDGG-VTVRATAKPLKKRSAEAEQNPEAPERQYYKLIVTVSDSGI 728

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++  +  +F Q          G GLGL I++ +    GG+  + S+   G     
Sbjct: 729 GIPPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTV 788

Query: 471 ILPNTRVLNFIPEDNHE 487
            LP  RV   + +   E
Sbjct: 789 TLP--RVEATVEQAEDE 803


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 9/256 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL++ ++   E R+RA   + AKS FLA+MSHE+RTP+N +LG +E++    +    +
Sbjct: 816  ITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNL----D 871

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               K +   I +SG  LL +IN+ILD S+I+AG+  L  +  +L + + +   ++  RA+
Sbjct: 872  PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAK 931

Query: 345  EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
            EK++E+  +++P L S++  D   +RQ++ NLL NAVKFT  G   V VT        + 
Sbjct: 932  EKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRL 991

Query: 403  -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             IS+ D G GI E ++  V   F Q   +     +G GLGL I   ++   GG   + S 
Sbjct: 992  TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESA 1051

Query: 462  LREGVE--VIAILPNT 475
              +G        LP  
Sbjct: 1052 EGKGSTFWFTVTLPRA 1067


>gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 908

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 154/369 (41%), Gaps = 10/369 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            L  L    +       IY      +  +        +           + A   Q   S
Sbjct: 406 ALFELSAALSGQLTEQQIYALLVKHLHGAGFGFGYVAIVGTAPAGGVAPIYAECGQPQRS 465

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                     +    +            ++  IL   A +           +  ++ +  
Sbjct: 466 QVPAASVPLMIGDEQVGAICVQGTVNVHASQPILIAVANQAATALARARLYASLEQAKHL 525

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  + AKS FLA+MSHELRTPLNAI+G+SE+++ +     +     + I  IH +G+HL
Sbjct: 526 AEGASRAKSAFLANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPD-IQKIHHAGRHL 584

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L LIN+ILD+S+IEAG+ EL     SL+ +V   I  +   A   +  +  +    L  +
Sbjct: 585 LGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECAADLGMM 644

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEG 415
            AD   +RQ+++NLLSNA KFT   G+V + V                 I D G G++E 
Sbjct: 645 AADLAKLRQILVNLLSNACKFT-QHGQVTLRVQRLRSETDPQSGTVVFEIADTGIGMSEE 703

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +I  +   F Q   ++     G GLGL I+       GG   ++S+L  G   I  LP  
Sbjct: 704 QIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGSTFIVTLPTN 763

Query: 476 RVLNFIPED 484
             L F PE 
Sbjct: 764 --LPFAPEQ 770


>gi|163793169|ref|ZP_02187145.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181815|gb|EDP66327.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 430

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 180/426 (42%), Gaps = 7/426 (1%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
                L+  I        +   W L    V A  + L K      +  G+  VW   +++
Sbjct: 4   LAVGSLLVVIAWGNVSEVLLVGWLLAMAGVTANRIVLWKAFSARPLATGDAAVWERRIVI 63

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
             I  G+ W +  L       P ++      ++   L+ +  +      A  L      +
Sbjct: 64  SVIVSGVLWAISGLPIAFGNLPVHIEGVVPVSVAGMLAGAIFALTPSTKAFRLYAIIAAL 123

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                 +     L ++++GM    L           ++    +  + E   L+A+     
Sbjct: 124 GPILGFLAVGDRLHLAVSGMGLVYLLVVLLWGRDAGRTTEGAIRLRLENQALVAD----- 178

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                 R+ AE     K    A++ HELRTPLNAI+GF++ ++ E  GPL N  Y++Y  
Sbjct: 179 --LSAVREGAEMAERLKRESFANLGHELRTPLNAIIGFAQSLDAELWGPLGNPRYRDYAK 236

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SGQHL  LI +ILDLSR +AG  EL E+ + +   VR C  ML   A    + +  
Sbjct: 237 AIADSGQHLYVLIQDILDLSRHDAGILELDETTVDVAAAVRTCRKMLGGSAASNGVSLAT 296

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
            +      V  D   +RQ+++NL +NA++FT  GGRV +           + ++D G G+
Sbjct: 297 TVPDEGLWVTGDSTKLRQIVINLAANAIRFTPAGGRVTIAACRLESGETELRVEDTGIGL 356

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +IP  L  F Q S        G GLGLP+++ +   HGG   I S+   G  V  +L
Sbjct: 357 DPEDIPRALEPFVQVSRDRARESGGAGLGLPLSKRLTELHGGVLEIHSRRGTGTVVRIVL 416

Query: 473 PNTRVL 478
           P  R  
Sbjct: 417 PAWRAA 422


>gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 559

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 3/256 (1%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           ++          ++   + +E    KS FLA+MSHELRTPLN+I GF  +I     G + 
Sbjct: 296 ILTNARKMIKTIEQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEI- 354

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           NE  ++ +  +H S  HLLNLIN+ILD+S+IEAGR   S+   ++ D++ E +  + L  
Sbjct: 355 NEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLI 414

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +K +++  +I   +  +++D++ + Q++LNL+SNA+KFT   G V +      G    I
Sbjct: 415 SKKEVKLITEIPDEIPEIYSDKRRVFQILLNLVSNAIKFTEK-GEVRIKCE-VDGNKLKI 472

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI E ++ T+  +F Q S + +   QG GLGL +++ ++   GG+  + S+  
Sbjct: 473 SVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYG 532

Query: 464 EGVEVIAILPNTRVLN 479
           +G      LP   V  
Sbjct: 533 KGSTFTFTLPLKSVEE 548


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 12/279 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E  +    L  A   ++E  + A+  N+AKS FLA+MSHE+RTP+
Sbjct: 127 KRVIRHARGRFRLEMELMESNRRLGEAAVRAEELAREAQSANIAKSEFLANMSHEIRTPM 186

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +    ++  + Y   I  SGQ LL LIN+ILD S+IEAGR EL   
Sbjct: 187 NGVIGMASLLLAEDL----SDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCR 242

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
             S  ++V+E  ++LQ +A  +NI +  ++ P + +V   D   +RQV+LNL+ NA+KFT
Sbjct: 243 PFSPRELVQEVAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFT 302

Query: 384 AIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            IGG V + +              + ++KD+G GI   ++  +   F Q   +      G
Sbjct: 303 EIGG-VAMELSPAPADPAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGG 361

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL I + +M   GG+  + S+  +G      +P   
Sbjct: 362 TGLGLAICRRLMELMGGEIGVESEEGKGSTFWFTVPLRP 400


>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
 gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
          Length = 1484

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 13/317 (4%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             ++L         +   + A     AL     +     +        Q  + +L  +++ 
Sbjct: 778  ALSLPVVVSPPPWLSPGAYAAYATFALGIAALLIVRQRR---AGFRVQLRQRELENKVQE 834

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                  + +K AE  N AKS FLA+MSHE+RTP++ ++G +E++    +    +E  K++
Sbjct: 835  RTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDL----SEQQKQF 890

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
                H SG+ LL+LINEILD S+IEA + EL      L++++ E   +    A  K + +
Sbjct: 891  ARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLAL 950

Query: 351  FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYIS 404
                D +    +  D   +RQV++NL+SNA+KFT  G   V VT   +          IS
Sbjct: 951  NSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNIDVCVTYKNSEDDRNKNDVTIS 1010

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +KD G G+       V   F Q   +      G GLGL I++  +    G   I S+   
Sbjct: 1011 VKDTGIGMDAATQNRVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNI 1070

Query: 465  GVEVIAILPNTRVLNFI 481
            G ++   +P + V    
Sbjct: 1071 GTDLSVTVPFSVVQPQT 1087


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
          Length = 925

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 179/388 (46%), Gaps = 24/388 (6%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L W  L L   GT    Y +++ S  L+ A L ++AL    +  A+     P+ +     
Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLIAAGLGVTALLALRMSRAINA---PLELISQGV 204

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------E 229
           A +    ++  L  M +  L         + ++            D   E         E
Sbjct: 205 AQLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIE 264

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P      ++
Sbjct: 265 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQD 320

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I +S + LL +INEILD S+IEAG+  L     +L D++++ + ML   A EK +E
Sbjct: 321 YLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLE 380

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404
           +       +   +  D + ++Q++ NL+ NA+KFT  GG V V               IS
Sbjct: 381 LVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRIS 439

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G G++E +   +  +F Q   ++     G GLGL I++ ++   GG+  + S   E
Sbjct: 440 VQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGE 499

Query: 465 GVEVIA--ILPNTRVLNFIPEDNHESTQ 490
           G E      LP +R  N  P  +  + Q
Sbjct: 500 GAEFWISLSLPKSRDDNEEPGASWAAGQ 527


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1076

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 24/283 (8%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +    A+L    +     + RA+  +  KS FLA+MSHELRTP+NA++G + ++   +
Sbjct: 521 TARQQADAKLRNVNAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTS 580

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +    +   ++++  I  SG  LL LIN+ILD S+IEAG+ E+ E   +L   + E + +
Sbjct: 581 L----DAQQQDFVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKL 636

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +  RA +K +EI    DP L   +  D   +RQV++NLL+N VKFT   G V V V   +
Sbjct: 637 VAPRAFKKGLEIAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFT-DNGEVIVYVKEVT 695

Query: 398 GRGQ----------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
              Q                  ++KD G GI E  +  +  SF Q   +      G GLG
Sbjct: 696 AEIQDREGSGSEGQSPRRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLG 755

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIP 482
           L I++ +    GG+  + S++  G      +  P     +  P
Sbjct: 756 LAISKRLCELMGGKIWVDSEIGIGSTFTFTIAAPIADTFDCAP 798


>gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 600

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/265 (41%), Positives = 160/265 (60%), Gaps = 5/265 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
            +   +  +  L  +      L+++    + RAE  N +KS FLA+MSHELRTPLNAI+G
Sbjct: 334 TVRDLETSRRKLQEQARQLVDLAEKYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIG 393

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++E    G L +  YKEY GDIH SG HLL LIN+ILD+S+IEAGR  L    + L 
Sbjct: 394 FSEIMESGLFGELGSPKYKEYAGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELS 453

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E + ++  RA+   + I  ++ P L +V AD++ ++QV+LNLLSNAVKFT  GG +
Sbjct: 454 EVVEESLRLVSGRAEVAKVHIANEMGP-LPTVDADKRAVKQVLLNLLSNAVKFTPAGGSI 512

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           H+  G TSGR   IS++D G GI    +P +   F Q       + +G GLGL +++S++
Sbjct: 513 HLR-GETSGRFVTISVEDTGIGIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLV 571

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG  ++ S    G +V   LP 
Sbjct: 572 ELHGGALVLESTEGVGTKVSFTLPL 596


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++L  +   +++I  L+     +   ++ AE  + AKS F+A+MSHE+RTP+N I+G ++
Sbjct: 1320 EMLQLKVTINEMIHNLKETTIKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTD 1379

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +     +        +EY+  +  S   LL +IN+ILD S+IEAGR EL +S  SL   +
Sbjct: 1380 LTLDTELTA----EQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQSDFSLRAHL 1435

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             + +  L  RA +K +E+   I   +  S+  D   +RQ++ NL+ NA+KFT+  G V +
Sbjct: 1436 YDTLKTLAWRAHQKGLELVCDIASDIPDSLVGDPGRLRQIVTNLVGNAIKFTSE-GEVDL 1494

Query: 392  TVGWTS--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             V              S+ D+G GI + ++  +  +F Q   +I     G GLGL I+  
Sbjct: 1495 VVKIDKYIDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYGGTGLGLTISTR 1554

Query: 448  IMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479
            ++    G+  + SK  +G         P    L+
Sbjct: 1555 LVELMKGKLRVVSKPGKGSTFEFTAQFPTKPDLD 1588


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 12/276 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E  +    LE A   ++E  + A+  N+AKS FLA+MSHE+RTP+
Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPM 181

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +          Y+  I  SG+ LL LIN+ILD S+IEAGR EL   
Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
             S  ++V+E +++LQ +A  +N+ +  +I PSL + V  D   +RQV+LNL+ NA+KFT
Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFT 297

Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            +GG V + +              + ++KD+G GI   +I  +   F Q   +      G
Sbjct: 298 EVGG-VAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL I + ++   GG+  + S++ +G      +P
Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 731

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/285 (35%), Positives = 158/285 (55%), Gaps = 8/285 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  L + N+ +   +  ++ L   +       +  ++ AE+ N AKS FLA+MSH
Sbjct: 294 FVDLISVFLERKNI-LEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSH 352

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+I+GFS +++     P   E    Y+  I  SG HLLN+IN+ILDLSRIEA +
Sbjct: 353 ELRTPLNSIIGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADK 408

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLL 376
             L+ES   L +++   + M+   A  K +E+  +  P  +   + AD K +RQVILNLL
Sbjct: 409 LVLNESDFDLKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLL 468

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT   G++ +T+       Q ++++D+G GI   EI  +  +F Q     ++A +
Sbjct: 469 GNAIKFTDSTGKILITLNKLENNFQ-LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYE 527

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGLPI + I+  H G   + S L +G + + I P    L  +
Sbjct: 528 GSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIFPFFTRLEHL 572


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL   +   +  ++ AE    AKS FLA+MSHE+RTP+N+I+G SE++    + P   
Sbjct: 356 ITELHRYQQELERAKEAAEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSP--- 412

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  + R+   LLNLIN+ILDLS+IE+G   + +   S+ + VR  + +L +RA 
Sbjct: 413 -DQRQFVTILTRASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAV 471

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +++  +IDP +   +  D    +QV++NL+ N +KFT   G V V +   +G   ++
Sbjct: 472 EKKLDLKLEIDPQVPEKILGDATRFQQVLINLIGNGLKFT-THGEVRVQLK-VNGHQLWV 529

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G G+A  ++  + T F QG  +I     G GLGL I++ ++   GG   + S++ 
Sbjct: 530 GVKDTGIGMAPEQMQGLFTRFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIG 589

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 590 QGSVFYFTLPL 600


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
          Length = 925

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 179/388 (46%), Gaps = 24/388 (6%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L W  L L   GT    Y +++ S  L+ A L ++AL    +  A+     P+ +     
Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLIAAGLGVTALLALRMSRAINA---PLELISQGV 204

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------E 229
           A +    ++  L  M +  L         + ++            D   E         E
Sbjct: 205 AQLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIE 264

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P      ++
Sbjct: 265 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQD 320

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I +S + LL +INEILD S+IEAG+  L     +L D++++ + ML   A EK +E
Sbjct: 321 YLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLE 380

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404
           +       +   +  D + ++Q++ NL+ NA+KFT  GG V V               IS
Sbjct: 381 LVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRIS 439

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G G++E +   +  +F Q   ++     G GLGL I++ ++   GG+  + S   E
Sbjct: 440 VQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGE 499

Query: 465 GVEVIA--ILPNTRVLNFIPEDNHESTQ 490
           G E      LP +R  N  P  +  + Q
Sbjct: 500 GAEFWISLSLPKSRDDNEEPGASWAAGQ 527


>gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 731

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 101/277 (36%), Positives = 156/277 (56%), Gaps = 8/277 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  L + N+ +   +  ++ L   +       +  ++ AE+ N AKS FLA+MSH
Sbjct: 294 FVDLISVFLERKNI-LEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSH 352

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+I+GFS +++     P   E    Y+  I  SG HLLN+IN+ILDLSRIEA +
Sbjct: 353 ELRTPLNSIIGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADK 408

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLL 376
             L+ES   L +++   + M+   A  K +E+  +  P  +   + AD K +RQVILNLL
Sbjct: 409 LVLNESDFDLKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLL 468

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT   G++ +T+       Q ++++D+G GI   EI  +  +F Q     ++A +
Sbjct: 469 GNAIKFTDSTGKILITLNKLENNFQ-LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYE 527

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGLPI + I+  H G   + S L +G + + I P
Sbjct: 528 GSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIFP 564


>gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
 gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
          Length = 571

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             +     +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +   + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567


>gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1660

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 8/306 (2%)

Query: 184  VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
             L + L   +  AL   +       K  +  L+  A++  +  E   A  L+ +  +   
Sbjct: 1100 ALPLRLGNRVIGALDLQSRNLNAFRKDELSGLTILADQIAVAIENARAYELAQKAVEEMR 1159

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  KS+FLA+MSHELRTPLN+I+GFS VI     GP+ N+T K+ +  I+ SGQHLLN
Sbjct: 1160 EVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPI-NDTQKQDLTAIYNSGQHLLN 1218

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN+ILDLS+IEAG+ ELS S +++ D++   +       ++K I++  +I+ +L  V A
Sbjct: 1219 LINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKPIKLITEIEDNLPIVRA 1278

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPT 419
            D   +RQV++N LSNA KFT   G + V               +++ D GPGIAE +   
Sbjct: 1279 DATRVRQVLINFLSNAAKFTDE-GSITVRARRVRSPEGKPELMVTVTDTGPGIAEEDRSK 1337

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILPNTRVL 478
            +   F Q   +      G GLGL I +S++  HGG+   + S +  G      LP   + 
Sbjct: 1338 LFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVGVGSTFFFTLPL-PLE 1396

Query: 479  NFIPED 484
               P++
Sbjct: 1397 EGKPDE 1402


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 165/364 (45%), Gaps = 16/364 (4%)

Query: 119 LCWTL-LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS-FFPVVVALST 176
             W L + +    T   E L I     LLI  ++       L   +    F    + L  
Sbjct: 118 AGWVLEMQVSTGMTAFLERLVIDLVGILLITGALLLYVRLALVSKLLQLNFAARTLNLEN 177

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                +           A +      +   L +  + +L  + ++  +   L   K    
Sbjct: 178 LNRSLLPKKSRQPQKRAADSQDELDSLLQALERIRLSMLEDREQRRTVELALMREKEEKI 237

Query: 237 ETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           ETR+    AE  N AKS+F+A+MSHE+RTP+N ++G  E++   T+    +++ + Y+G 
Sbjct: 238 ETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTL----DDSQRHYLGI 293

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I RSG  L+N+IN+ILD S+IEAG+  L      L +++ +C+ M      ++NIE+   
Sbjct: 294 IERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICS 353

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKD 407
           I P+    +  D   ++QV++NL+ NA KFT+  G ++V     +         + S++D
Sbjct: 354 ISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSE-GHIYVEARQVNASDADLPMIHFSVED 412

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI   +   +  +F Q   +      G GLGL I + +    GG+  + S+ + G  
Sbjct: 413 SGIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGST 472

Query: 468 VIAI 471
               
Sbjct: 473 FWFS 476


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 145/276 (52%), Gaps = 12/276 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E       LE A   ++E  ++A+  N+AKS FLA+MSHE+RTP+
Sbjct: 122 RRVIRHARGRFKLEMELRVSNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +          Y+  I  SG+ LL LIN+ILD S+IEAGR EL   
Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
             S  ++V+E +++LQ +A  +N+ +  +I P + ++   D   +RQV+LNL+ NA+KFT
Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFT 297

Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            +GG V + +              Y ++KD+G GI   +I  +   F Q   +      G
Sbjct: 298 EVGG-VAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL I + ++   GG+  + S++ +G      +P
Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
          Length = 1362

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 147/275 (53%), Gaps = 10/275 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     I   + A+    + ++ AE  + AKS FLA+MSHE+RTP+NA++G +E++  
Sbjct: 657 LFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLD 716

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    N T +EY+  +  SG+ LL++IN+ILD S+IEAGR++L ++   L + + + +
Sbjct: 717 TDL----NSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTM 772

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             L +RA  K++E+   +D  +  ++  D   +RQ+I+NL+ NA+KFT   G + + V +
Sbjct: 773 RSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEE-GEIVLDVNY 831

Query: 396 T----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                +    +  ++D G GI E +   +  +F Q   ++     G GLGL IA  ++  
Sbjct: 832 DFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEM 891

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG+  + S++ +G E             +P +  
Sbjct: 892 MGGKIWVNSEVGKGSEFHFTARFELTEEEVPANEP 926


>gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 571

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL  I  + E +       ++ E  K+++  I      +  L
Sbjct: 342 LDQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVDTEYSKKFLRIIETETDRMTRL 398

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS++++    L        +IV+  +  L + A +K   +   +  +L  V  D
Sbjct: 399 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  + Q+ +N+++NA+K+T  GG + ++  +        ++KDNG GI + ++P +   F
Sbjct: 459 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTFTVKDNGIGIPKEDLPRIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A      G GLGL I + I+  H G+  I S+L +G  V   LP ++
Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLPYSK 569


>gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 577

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL  I  + E +       ++ E  K+++  I      +  L
Sbjct: 348 LDQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVDTEYSKKFLRIIETETDRMTRL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS++++    L        +IV+  +  L + A +K   +   +  +L  V  D
Sbjct: 405 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  + Q+ +N+++NA+K+T  GG + ++  +        ++KDNG GI + ++P +   F
Sbjct: 465 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTFTVKDNGIGIPKEDLPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A      G GLGL I + I+  H G+  I S+L +G  V   LP ++
Sbjct: 524 YRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLPYSK 575


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 13/364 (3%)

Query: 122 TLLTLVEPGTWTPEYLTI-----YKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALS 175
             ++L+ P       + +        + LLI + + ++   +       L       A  
Sbjct: 186 GAISLIMPMDIFLHGIKLNVYRHLSFSLLLIGVIVISMYLLVTRLVTRSLGELKGATAQV 245

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAEL-EVA 231
            Q    + +  I   G +         +   L   +++    +  +  +  L+ E   + 
Sbjct: 246 GQGDFDIDLNRIKAQGEIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIK 305

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +    +  E N  KS FLA MSHELRTPL +++ F++++  +    L  E  ++ +
Sbjct: 306 QDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE--RQNL 363

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  + Q+LL LIN ILDL++IEAGR EL    + + D++     ++   A++K I   
Sbjct: 364 KYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWE 423

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGP 410
             +DP +S + AD + +R+VI NL+ NA+KFT   GRV + V          I + D G 
Sbjct: 424 ISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRVIDTGI 483

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   E   +   F Q   +      G GLGL +A+ +++ H G+  + S+L +G   + 
Sbjct: 484 GIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVV 543

Query: 471 ILPN 474
           +LP 
Sbjct: 544 LLPK 547


>gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
 gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
          Length = 571

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             +     +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +   + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567


>gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 836

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 179/424 (42%), Gaps = 28/424 (6%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
            +TL       +   + +++         W +       A G     + + +P  +   +
Sbjct: 147 ALTLVSAGLPYAASSRFISNSKGNIAPAEWIVAAAPINRADGTLMGTMVVEQPM-YNVRH 205

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           L        +++++  A                +  +L     +   V DI+   +    
Sbjct: 206 LLSSPKLLAVLSIAGGAGL-----------LPGLFFSLYMGRRLGKRVRDITEGLLALRQ 254

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLSD--ETRKRAEEENLAKSRF 252
                 +         + L    E  +   I E    K +SD    +++AE    AK+ F
Sbjct: 255 GLLTHRLPQKGIDEIAEALQVFNETVEHLQIEEERKQKVISDSLAAKRQAESGMAAKADF 314

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+N I+G + ++    +         E +  I  SG+ LL+LIN+ILD S
Sbjct: 315 LANMSHEIRTPMNGIIGTTSLLLDSPLDN----EQMELVRMIRTSGESLLHLINDILDFS 370

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++E+ R  L    +SL  +  E + +   +A EK +E+   +  ++   +  D + ++QV
Sbjct: 371 KLESARMVLERLPVSLERLFHETMGIFAFKAAEKGVELNYHVSENIPRHITGDFQRLKQV 430

Query: 372 ILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSF 424
           ++NL++NAVKFT  G  + V    V       +Y    +S++D G GIA+ ++P +  +F
Sbjct: 431 LVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYTLLQVSVRDTGIGIAKDKLPLLFQAF 490

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q   +      G GLGL I + +    GG+  + S+L  G      +P +   +     
Sbjct: 491 TQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVTSELGGGSNFFFEVPMSAAQDDAEAL 550

Query: 485 NHES 488
             E+
Sbjct: 551 EEET 554


>gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 573

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 150/349 (42%), Gaps = 16/349 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + +                  +  V+  +   +     L +  +  +AT L         
Sbjct: 218 VVMGRHLAIAMSYRGYANSLLWLEVLPPNEAPLWQAGHLQVLQS--IATYLGTAIAHAIL 275

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +S       Q     L           ++ R +AE  N  KS+FLA+ SHELRTPLN 
Sbjct: 276 LDQSRQLATRLQLANQTL----RQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNG 331

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GF  ++        + E   +++ + +RS  HLL LIN++LD+++IEAG+ +L     
Sbjct: 332 IIGFIRLVLDGM--AESREEELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPC 389

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAVKFTA 384
            L  + ++      L+A++K +++   + P+   +W   D + + QV+LNL+ NA+KFT 
Sbjct: 390 DLRALFKDVEAKTGLQAKQKGLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTP 449

Query: 385 IGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
             G V V      G      I + D G G++  +   +  +F Q   +      G GLGL
Sbjct: 450 K-GSVTVRADLLPGDPGMARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGL 508

Query: 443 PIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            I+Q ++   GG+    S     G  V   +P  R    +P       Q
Sbjct: 509 AISQRLVEAMGGEINFYSLGEGLGSTVTFTVPLYR--QPLPGGEASPAQ 555


>gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
 gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
          Length = 545

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + + +++ +  ++L  +A EK I +       + 
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 781

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                   T  L + N  +       ++ I E ++ ++     ++ AE  N AKS+FLA+
Sbjct: 355 LEVLVDKRTSQLLEVNGSLEETNCMLEEEIEEHKLTETKLKAAKEEAERANSAKSQFLAN 414

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N I+G + ++E   +     +   + +  I  S +HLL +IN+ILDLS ++
Sbjct: 415 MSHEIRTPMNGIMGMTSLLEFSKL----TDEQIDIVKMIETSSKHLLQIINDILDLSVMD 470

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
            G+ EL    I++ +++ E   +    A+ K +++   +D +L   +  D+  + QV+ N
Sbjct: 471 VGKIELKPERINIFNLMNESRNLFTYLAENKGLKLEIIVDNNLPNEIILDKGRLMQVLSN 530

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+ NA+KFT   G++ V+V     +        S+KD G GI E +IP +   F Q  I+
Sbjct: 531 LIGNAIKFTEK-GKIQVSVDKVEDKENKVKLMFSVKDTGIGIKEEDIPRLFNYFTQLDIS 589

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                QG GLGL I+++I+   GG+  + S+  +G      
Sbjct: 590 ASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGSTFYFT 630


>gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
 gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
          Length = 773

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/272 (41%), Positives = 153/272 (56%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +       +E+E         ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 503 RRLFSFIQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCK 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              L  I+ E +  L  +AQEKNI +   I P L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 623 NTDLEPIISEAVRTLTPQAQEKNIVVTTNITPEL-HAEVDGRAMKQIFLNLISNAVKFTP 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + V   +         I D G GI +  I  +   F Q    +  +  G GLGL I
Sbjct: 682 SGGNIDV-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V  I+P T+
Sbjct: 741 SRSLLELHKGKLEITSKEMKGTTVTIIMPITQ 772


>gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 740

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 3/276 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +    + E + A+ L  E ++ AE  N  KS FLA+MSHELRTPLN+I+GFS+++  +  
Sbjct: 463 QTCRDVTERKEAEKLLQE-KQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIY 521

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L NE   + +G+I RSG+HLLNLIN+ILDLS++EAG+ EL      L   +     +L
Sbjct: 522 GDL-NEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLL 580

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A  K IE+  ++D SL+++ ADE    Q++ NLL NA+KF+   G V +      G 
Sbjct: 581 SPIADRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKR-KGD 639

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++KD G GI   +   +   F Q +       QG GLGL + + I+  HGG     
Sbjct: 640 TVEITVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFN 699

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           S++ EG      +P         +   E++     A
Sbjct: 700 SRIGEGSTFAFTIPINGNKRTEGDSEVEASNIAGKA 735


>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 932

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 24/346 (6%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
            T     +      +I L+I+ L   +     +    P+   +      S    +  L  
Sbjct: 236 GTAGATVLQIILAFVIILAIAVLIRILFTQVTY----PIRDYILKLKDFSFDDEEFRLVP 291

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                L+        L++S    L  +          + A+      R  A++ N AKS 
Sbjct: 292 KGTVELNMLAENFNELYRSFHNELVRR----------KKAEETMKAARDEADKANRAKSE 341

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLASMSHE+RTP+N+I+G+  +++   + P      +EY+ +I  + ++LL +IN+ILD 
Sbjct: 342 FLASMSHEIRTPINSIIGYQYLLKNSVLSP----KQREYVENIGLAAKNLLAIINQILDF 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAGR  L E   ++ D++ E +I++ + A+ K IE+  K+D  +   +  D   ++Q
Sbjct: 398 SKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V++NL+SN +KFT   G + + V              S+ D G GI++ +   +   F Q
Sbjct: 458 VVMNLVSNGIKFTHE-GYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLFQVFTQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G  +      G GLGL I + ++    G+  + S++ +G      L
Sbjct: 517 GDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 729

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 136/268 (50%), Gaps = 3/268 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + + +     E+     EL        +  +  +  +  K  FL+++SHEL+TPL +I+G
Sbjct: 463 TILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSIIG 522

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           ++E++   ++G L  E  K     + R+ + L  L++ +L LSR +AG  +     +++ 
Sbjct: 523 YTELLNDGSLGELG-EEQKHAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNIS 581

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++  + I  LQ++ +EKN+E+ +KI+P L  +  D   +  +  N++ N++KFT  GG +
Sbjct: 582 ELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSI 641

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +          +I+IKD G GI +  I  +   F Q   + K    G GLGL I ++I+
Sbjct: 642 TIFAN-KEDEYIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTIV 700

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476
             H G+  + S+   +G EV   LP   
Sbjct: 701 EAHEGEIWVESEGKGKGTEVHIKLPVAE 728


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 14/352 (3%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS------LAGMLA 194
               +L +L  + L +  L   V      +   +   +    + + +       L  ++ 
Sbjct: 168 AFMVMLGSLLCAYLVSLRLQGVVSAPIAELARTMQGVSRDQNYAVRVVKSNNDELGALMD 227

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                   I     +        + +      ELE+  +      + A+  + AKS+FLA
Sbjct: 228 GFNEMLGQIQTRDNELASYRTQLELKVALRTRELELTVAELQRAMEAAQAASRAKSQFLA 287

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N +LG +E++    +    +E  + ++  + RSG+ LL++IN+ILD S+I
Sbjct: 288 NMSHEIRTPMNGMLGMAELLMATRL----DEQQRRFVSSVRRSGEALLSIINDILDFSKI 343

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373
           EAG+ EL E+A +L D V + I +L   A  K +EI   ++  +  V   D+  + QV++
Sbjct: 344 EAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDVPPVLLGDQVRVHQVLM 403

Query: 374 NLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NL+ NAVKFT  G  +    +           I + D G GI++     +   F Q   +
Sbjct: 404 NLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIGISDEVKGRIFDGFSQADNS 463

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                 G GLGL IA+ ++   GG+  + S++  G      L   +  +  P
Sbjct: 464 TTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLKLHKEASERP 515


>gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 737

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 5/253 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + + A S  ++ R  AEE N AKS FLASMSHELRTP+N +LG  +++E    G +  
Sbjct: 343 VDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLME----GSVKQ 398

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K  +     S ++LL ++++ILD SRIEAG+  L  +  S+ +++     +  +  +
Sbjct: 399 EVNKRRLQIASNSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIEVE 458

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I  +        W DE  +RQ+++NL+ NA KFT   G++ V       R   +S
Sbjct: 459 KKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFT-QNGQIIVRAQSGENRDLKLS 517

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI    +  +  SF Q   +      G GLGL I + +     G   + S+  +
Sbjct: 518 VQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQGK 577

Query: 465 GVEVIAILPNTRV 477
           G E    LP    
Sbjct: 578 GSEFTLHLPLREA 590


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 10/305 (3%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            VA    +I        S+     T      Y    +  ++ +           I E    
Sbjct: 767  VAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQIIARDITESRRV 826

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                   R +A E +  KS F+A+MSHE+RTPLNAI+G +E+++   +    +E  +E++
Sbjct: 827  AEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPL----SERQREFV 882

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  S Q LL++IN+ILD S+IEAG+  L E    L+ +V     ML   A+ K I + 
Sbjct: 883  QTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLM 942

Query: 352  QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIK 406
              +DP++   +  D   +RQV+LNLLSNAVKFT   G V + V       S       ++
Sbjct: 943  TFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQ-GEVLLRVLPHRAADSEVELLFEVR 1001

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI    +  +   F Q   +      G GLGL I+++++   GG     S+   G 
Sbjct: 1002 DTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGS 1061

Query: 467  EVIAI 471
                 
Sbjct: 1062 TFRFT 1066


>gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 554

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/365 (27%), Positives = 161/365 (44%), Gaps = 10/365 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
           AI +   L   ++          I+    L+  L I  L+   L           V  + 
Sbjct: 188 AISIVIPLDVYMDSEKGAVVQDVIFFGGMLVACLVIMYLALTYLVTRPLSKIQAGVERIQ 247

Query: 176 TQAI---MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           T  +   ++       +  ++         +         ++    A+  +  A LE  +
Sbjct: 248 TGDLDVELAHTESSREMNTLMTEFNEMAHELAGIYSNLEAQVQVRTAQLAEANAVLERQR 307

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPLNNETYKEY 290
           +  +E   R  +EN  KS FLA MSHELRTPL +I+ F+E++    E       ET +E 
Sbjct: 308 AQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELLNRNSEPADEKEAETRRE- 366

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I  + + LL +IN+IL++SR++AGR E++   + L DI      ++Q  A  K I  
Sbjct: 367 ---IEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAF 423

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNG 409
             +IDP +  V AD + +R V+ NL  NAVKFT  GG V +++ W       ++ + D G
Sbjct: 424 ACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTG 483

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA+ +   +   F Q   +      G GLGL +A+     HGG   + S+L  G    
Sbjct: 484 IGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFT 543

Query: 470 AILPN 474
             +P 
Sbjct: 544 VRIPV 548


>gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 609

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/391 (28%), Positives = 171/391 (43%), Gaps = 27/391 (6%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G    ++ +  P   T   L    +  L + +  S L   M+     + +  V   L  +
Sbjct: 178 GDTIGMVKITLPLDKTQSRLAENNAILLAMGIVTSFL--AMVAAYAIVRYVIVKPVLYLK 235

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            I                    F  +++   +    +++ Q E       L+        
Sbjct: 236 DISEEIARGTLDLRADIRTGDEFEELSHAFNRMLRHLVTVQDELKLANNSLDSKVDELAR 295

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                 E N  K+ FLA+MSHELRTPLN+ILGFS+V+         N+  K Y+G+I  S
Sbjct: 296 ANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVL---GSADNLNDKQKRYLGNISSS 352

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ LL LIN+ILDL++IE+G+ EL     S+ +IV +  + +   A  KNIE+     P 
Sbjct: 353 GQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMCSPD 412

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------------SGRGQY 402
           +  ++ D   ++Q++ NLLSNAVKFT  GGRV V V                  +     
Sbjct: 413 MPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARDLVQ 472

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQSIMANHGGQF 456
           IS+ D G GI   +   +   F Q S        +    +G GLGL I + +    GG+ 
Sbjct: 473 ISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLLGGEV 532

Query: 457 LIRSKLREGVEVIAILPNT-RVLNFIPEDNH 486
            + S+  +G   +  +P + R  N +P D+ 
Sbjct: 533 KVESEFGKGSTFVVRIPISVRASNELPVDSE 563


>gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
 gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
          Length = 773

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/272 (40%), Positives = 148/272 (54%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E         ++RAE  N AKS FLA++SHELRTPL
Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ Y+EY+ DIH SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L  I+ E I  L  +AQEK I I   I P L     D + MRQ+ LNL+SNAVKFT 
Sbjct: 623 NVDLEPIISEAIRTLTPQAQEKKISITANIAPKL-HAELDCRAMRQIFLNLISNAVKFTP 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +   +         IKD G GI +  I  +   F Q          G GLGL I
Sbjct: 682 SGGSIDI-CAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPFEQVENQFTKTHTGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I S+   G  V   +P  +
Sbjct: 741 SRSLLELHKGKLEIASEEENGTTVTITIPIKQ 772


>gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1359

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 135/270 (50%), Gaps = 11/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++A+      ++ AE  N  KS FLA MSHE+RTP+NA++G + ++    +     
Sbjct: 703 ITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQLTA--- 759

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I  S   LL +IN+ILD S+IE+G+  L E    L   + E + +L  +A+
Sbjct: 760 -QQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLSSKAR 818

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K IE+   +D  +   +  D   +RQ+++NL+SNAVKFT   G V ++V  T+      
Sbjct: 819 DKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTET-GDVVISVTPTAEISEEQ 877

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI+   +  +   F Q   +      G GLGL I+Q +    GG+  +
Sbjct: 878 IRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGGKMWV 937

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            S+   G      +  T V +    DN E 
Sbjct: 938 ESEEGVGSTFYFTVIATPVSSDSEPDNREQ 967


>gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
 gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
          Length = 571

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             +     +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  I+ +  ++L  +A EK I +   +   + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQVNVLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567


>gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 631

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 139/271 (51%), Gaps = 4/271 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  +    +         I   +  +      R  AE  N AKS FLA+MSHELRTPLN
Sbjct: 355 RLVYAEDGSMLYAEGTIQEITARKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLN 414

Query: 266 AILGFSEVIELETM--GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           AI+G+SE++  +T    P   E ++  I  I+ +G  LLNL+N++LDL+++EAG+Y+++ 
Sbjct: 415 AIIGYSELLMDDTDFDDPTMVEQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAA 474

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               L  +VR+ I  +   AQ+    ++ + +  L  +  D   +RQ++LNLLSNA KFT
Sbjct: 475 ETFDLNSLVRDLIATINPMAQKNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFT 534

Query: 384 AIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G ++++V +  + +     ++D G G+ + ++  +   F QG  +      G GLGL
Sbjct: 535 KA-GSINISVSFDPASQHVQCRVRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGL 593

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + +  +    G   + S   +G     + P
Sbjct: 594 ALCRHFIELLNGSIQVESVFGQGSIFTIVFP 624


>gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
          Length = 632

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          +V  L     + ++ L +    +   +            +     +S
Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             A+K +  + ++   ++  +  R +AE  N  KS FLA+MSHE+RTP+N I+G + ++ 
Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P      KE++  I  S Q L+ +I++ILD S++EAG+ EL+        ++ + 
Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++AQ+KN+++   IDP L   V  DE  ++QV+ NLLSNAVKFT  G  ++ V++
Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386

Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +         + D+G GIA+     V   F Q   +      G GLGL I   ++  
Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG   + S+L  G      +P T V++ +P    
Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480


>gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
          Length = 632

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          +V  L     + ++ L +    +   +            +     +S
Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             A+K +  + ++   ++  +  R +AE  N  KS FLA+MSHE+RTP+N I+G + ++ 
Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P      KE++  I  S Q L+ +I++ILD S++EAG+ EL+        ++ + 
Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++AQ+KN+++   IDP L   V  DE  ++QV+ NLLSNAVKFT  G  ++ V++
Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386

Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +         + D+G GIA+     V   F Q   +      G GLGL I   ++  
Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG   + S+L  G      +P T V++ +P    
Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 157/360 (43%), Gaps = 15/360 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSI----SALSNFMLPYAVFLSFFPVVVALSTQ 177
            +LTL  P     + L  + + T    LS      AL++      + +    +V+ L   
Sbjct: 225 GILTLGSPEICASKMLLPFHNQTGCFLLSGFDQRQALASSKRVLYLGIGVCAMVLLLIVP 284

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SL 234
             + +          +             +                L A  E  +     
Sbjct: 285 YAIILSHRLTHPLMKIVDIARRVPTAPDTIEWLPDSDNEIGILNRSLQAMTEQLQSSIQE 344

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R+ AEE + AKS+FL +MSHE+RTP+N ++G +E++    +     E  ++    +
Sbjct: 345 LQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLA----EEQRQIADTV 400

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG+ LL +IN+ILD S++EAG+ +L      +  IV E   +   +AQ K +E+   +
Sbjct: 401 AESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVDM 460

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGP 410
              +  +   D   +RQV++NLLSNA+KFT  G   V +     + +     +SI+D+G 
Sbjct: 461 ADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSATIVVSIRDSGI 520

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    IP +   F Q   +      G GLGL I Q ++ + GGQ  + S+  +G     
Sbjct: 521 GIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFWF 580


>gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 145/278 (52%), Gaps = 12/278 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +        + E  +    L  A   ++E  + A+  N+AKS FLA+MSHE+RTP+
Sbjct: 122 KRVIRHARGRFKLEMELMESNRRLGEAAVRAEELAREAQAANIAKSEFLANMSHEIRTPM 181

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++  E +    ++  + Y   I  SGQ LL LIN+ILD S+IEAGR EL   
Sbjct: 182 NGVIGMASLLLAEDL----SDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCR 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
             S  ++++E  ++LQ +A  +NI +  ++ P + +V   D   +RQV+LNL+ NA+KFT
Sbjct: 238 PFSPRELIQEVAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFT 297

Query: 384 AIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            +GG V + +              + ++KD+G GI   ++  +   F Q   +      G
Sbjct: 298 EVGG-VAMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGG 356

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            GLGL I + +M   GG+  ++S+  +G      +P  
Sbjct: 357 TGLGLAICRRLMELMGGEIGVKSEEGKGSTFWFTVPLR 394


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 17/330 (5%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            +   ++ +   + ++S+ ++            +             + +L   AE     
Sbjct: 787  ALKMILASQGIKTLISLPLIYHEHCFGFVGFDA--VREVKKWGDDEISLLRVLAELFTNA 844

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                  ++   + R  AE  N AKS FLA+MSHE+RTP+N ++G + ++    +    ++
Sbjct: 845  ELRFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDL----SD 900

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +++   +  SG+ LL +IN+ILD S+IEAG+ EL      L  ++     ++ L+A E
Sbjct: 901  EQRDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVE 960

Query: 346  KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
            KN+E    + P +   +  D   +RQ++ NL  NA+KFT   G V V V   S       
Sbjct: 961  KNLEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFT-QNGNVTVAVSMQSENNGDAV 1019

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               S+KD G GI E ++  +  SF Q   +      G GLGL I++ ++   GG+  + S
Sbjct: 1020 LRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVIS 1079

Query: 461  KLREGVEVIAIL-----PNTRVLNFIPEDN 485
                G E    +     P    +   P   
Sbjct: 1080 HEGNGSEFWFTIFLKKQPFYSTIETQPTSA 1109


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 19/325 (5%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL--SCQ 218
            ++ + FF +   L     +S     +      A  L    ++      S ++ L    +
Sbjct: 356 QSLIIGFFFIGSILVAFIWVSRISRPLDFLTNYAKQLPSQDFLKDDQPNSTIQSLAVRSR 415

Query: 219 AEKDDLIA-----ELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            E   L       E+E+ K++ +    ++ AE+ N AKS FLA MSHE+RTP+N +LG +
Sbjct: 416 DEVGRLAESFIFMEVELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMA 475

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++    +    +E  ++Y+  I  SG+ LLN+IN+ILD S+IEAG+ +L      L ++
Sbjct: 476 SILADTPL----SEKQRKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKLSEL 531

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     +   RA  KNIE+   I   +   +  D   +RQ++ NL+ NA+KFT   G + 
Sbjct: 532 LSYLTDIFSPRAHSKNIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQ-GSIQ 590

Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + V  +          IS+ D G GI  G+   +  SF Q   +      G GLGL I++
Sbjct: 591 IIVEISDEDARNMKLKISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLGLSISK 650

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
           S++   GG+  + S+  EG      
Sbjct: 651 SLVELMGGELGVESRPGEGSSFWFS 675


>gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 663

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 13/368 (3%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF---FPVVVALSTQAIMSM 182
           L       P+ + ++ S   LIAL+ SA+    LP A          + +AL        
Sbjct: 291 LQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALLAANDTPP 350

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---------LIAELEVAKS 233
                 L   L+ ++     + +  F  +  I+  ++              I + +  + 
Sbjct: 351 GHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDITDRKHIEQ 410

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E +  AE  N  K+ FLA++SHELRTPLNAI+GFSE+++ E  GPL   +Y+ Y+ D
Sbjct: 411 TLREAKDEAERGNRTKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRAYVDD 470

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           IH SG HLL LIN+ILD+S+ EAG  +L E+A+ + D++R  I +L  RA+   I + + 
Sbjct: 471 IHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAISLTED 530

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           + P+L ++ ADE+ +RQ+ILNL SNAVKFT  GG V +    T      I + D G G+ 
Sbjct: 531 LPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFV-IRVADTGIGMT 589

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  V+  F Q    +    +G GLGLP+A++++  HGG   + S+   G  V    P
Sbjct: 590 PEDVQRVMEPFVQADTRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVTVTFP 649

Query: 474 NTRVLNFI 481
            +R+++  
Sbjct: 650 PSRIIDQS 657


>gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
 gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
          Length = 545

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + + +++ +  ++L  +A EK I +       + 
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + R+ AE  ++AK +FLA+MSHE+RTP+NA++G +E++    +G   +   +EY+  
Sbjct: 249 ELVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELL----LGTDLDTEQQEYVEI 304

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  +   LL LIN+ILD S+IE+G+ E  + A  L  ++     M+   AQ K +E    
Sbjct: 305 VKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEFTCF 364

Query: 354 IDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDN 408
           +DP     +  D + +RQV++NL  NAVKFT   G V +             I   I D 
Sbjct: 365 VDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEK-GNVDIHAAMIGEEDGMVLIRFAISDT 423

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +     V  SF Q   +     +G GLGL I++ ++A  GG+  + S++  G   
Sbjct: 424 GMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGGRMGLDSEVGVGSTF 483

Query: 469 IAILPNTRVLNF 480
              LP  +    
Sbjct: 484 WFTLPFAKQDQP 495


>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
           700345]
 gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 929

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 162/352 (46%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++    F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLFFTFRLLKNV---TQPITDMVRVVAKIREGKLDTRLTGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA+E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I RS  +LL++IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     SL + + E + ML   A+EK + +   +D  +   V  D 
Sbjct: 355 DILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDVSGDA 414

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
               Q+I NL+ NA+KFT  G  ++ + +        +I   I D G G+ E +  ++  
Sbjct: 415 MRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDTGIGVDEQQQSSLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S+  +G      LP 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTFWFSLPL 526


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 19/332 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + A+    L   + +         +   I +     +    + + +L          FK 
Sbjct: 75  VLAMRAAALEVPIVILTSHDDSDFAFSTIEAGAQDYLVKGVIGSDSLKRVIRHARGRFKL 134

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            ++++        L    E A    +  R+ A+  N+AKS FLA+MSHE+RTP+N ++G 
Sbjct: 135 EMELMES---NRRL---GEAAVQAEELARE-AQAANIAKSEFLANMSHEIRTPMNGVIGM 187

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++  E +    ++  + Y   I  SGQ LL LIN+ILD S+IEAGR EL     S  +
Sbjct: 188 ASLLLAEDL----SDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRE 243

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +V E  ++L+ +A  +NI +  ++ P + + V  D   +RQV+LNL+ NA+KFT +GG V
Sbjct: 244 LVEEVAVLLRPQAAAQNIALTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGG-V 302

Query: 390 HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            + +              + ++KD+G GI   ++  +   F Q   +      G GLGL 
Sbjct: 303 AMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLA 362

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I + ++   GG+  + S+  +G      +P  
Sbjct: 363 ICRRLVELMGGEIGVESEEGKGSTFWFTVPLR 394


>gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
 gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
          Length = 545

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + + +++ +  ++L  +A EK I +       + 
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 632

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          +V  L     + ++ L +    +   +            +     +S
Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             A+K +  + ++   ++  +  R +AE  N  KS FLA+MSHE+RTP+N I+G + ++ 
Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +   KE++  I  S Q L+ +I++ILD S++EAG+ EL+        ++ + 
Sbjct: 271 DTKL----DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++AQ+KN+++   IDP L   V  DE  ++QV+ NLLSNAVKFT  G  ++ V++
Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386

Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +         + D+G GIA+     V   F Q   +      G GLGL I   ++  
Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG   + S+L  G      +P T V++ +P    
Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 12/265 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+E +  +++  E ++RAE  + AK+ FLA+MSHE+RTP+N I+  + ++ +  +   
Sbjct: 539 RDISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTELTS- 597

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  +  S ++LL LI++ILD+S+IEAG+ EL  +  S+   + E +     R
Sbjct: 598 ---EQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPR 654

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
             +K ++I  ++   L  +   D    +Q++LNLL NA+KFT  GG + +    ++    
Sbjct: 655 ITQKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGG-ISIVAKPSARHDN 713

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I I D G G++   +  V + F Q   +      G GLGL I + ++   GG+  
Sbjct: 714 QLIMRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIW 773

Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482
             S+   G      LP   V+   P
Sbjct: 774 AASRPGSGSTFFVELPF--VVREAP 796


>gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 798

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 167/305 (54%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                       +S +G +  A + +        K     +   A    +  E   A+  
Sbjct: 484 GAGISTVWFKPILSRSGKVIGAFAMYFAEARTPGKWEEDYVMGAAHLASIAIERRRAEEG 543

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +  + AE  N AK++FLA+MSHELRTPLNAI+GFSE++  E  GPL ++ Y+EY  DI
Sbjct: 544 LRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGPLGSDRYREYTNDI 603

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           H SG+HLLN+I++ILD+S+IEAGRY L E  I +  +++  + M++ R  EK   +   +
Sbjct: 604 HGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRARTLEKRQNVNLHL 663

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             ++ +V AD++ MRQ++LNLLSNA KFT   GR+ + V         +S+ D+G GI  
Sbjct: 664 PEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDLMVSVADSGIGIPR 723

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  VL  FGQ          G GLGLPI +S++  HGG F + S L  G     I P 
Sbjct: 724 NKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLESTLGAGTTATMIFPA 783

Query: 475 TRVLN 479
            R+L+
Sbjct: 784 HRLLS 788



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 5/227 (2%)

Query: 28  PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT--QNPIFPMWSLITLAVYAA 85
                 D  +           +  +    + +A   T+ T     +   W  + LAV+  
Sbjct: 33  SPSRSQDIRLELYRTIMRAYRTLPVFFPTVAMALAFTFNTTYPEMLVAAWWFVLLAVHVE 92

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW-TLLTLVEPGTWTPEYLTIYKSAT 144
                ++    D    +V  W     +    + + W  LL L        + L I     
Sbjct: 93  YAFFQRRFFAEDSAAIDVDAWIKATAIRYWIMNVVWLGLLPLFWHPGSDVQNLAILMVFV 152

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           + + ++      F L         P++  +   +I ++    +++         +   I 
Sbjct: 153 VHVVMASQT--AFHLVPIFVSVTLPLIAVVIAVSICTLEAAYMAIGFGCIPTYLYLARIA 210

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                +  +  + +    DLI ++  A+ LS+E R RAEE N    R
Sbjct: 211 QQQRAAAYETFNLRFRNADLIRDIGKARDLSEEARLRAEEANAQLQR 257


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 19/349 (5%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           ++   +T +       A  L+ ++      F+L           + +L           +
Sbjct: 152 LDRLGFTVKRYLQIVGAVSLVGMAG----AFILARLTAQGLIQPIHSLIMTMQQVQRDRN 207

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEE 245
             L              +  L  +   +L     +D+ L   +E   +  +E   +AE  
Sbjct: 208 YRL-----RVEGLSNDESGQLAAAFNDMLDEIQRRDENLEKTVEERTADLEEAVTKAEAA 262

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +LAKS FLA+MSHE+RTP+N +LG +E++    +        +E IG I  SG  L+ +I
Sbjct: 263 SLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDTY----QRELIGTIMSSGTSLVTII 318

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG++ L+E   +L + +     ++  RA EK++E+F + DPSL   V+ D
Sbjct: 319 NDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRYDPSLPEGVFTD 378

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVL 421
              +RQVI NL+ NA+KFT   G+V + V            IS+ D G GI   ++  + 
Sbjct: 379 GGRLRQVITNLVGNAIKFTDE-GQVLIDVTGAQSGETVDLRISVTDTGIGIPPEKLEAIF 437

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             F Q         +G GLGL I ++I+   GG+  + S+L  G     
Sbjct: 438 EKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATFFI 486


>gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum SS9]
          Length = 903

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LL  L++S+L  + L   V     P+   +S    +    LDI + G L   L
Sbjct: 150 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 206

Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                   +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    K
Sbjct: 207 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 266

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN+IL
Sbjct: 267 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 322

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L        + + E + +L   A EK +E+  K+D  + + +  D   +
Sbjct: 323 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRI 382

Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +QV+ NL+ NAVKFT  G     V +            +++D G GI+E +   +  +F 
Sbjct: 383 QQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFS 442

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG+  + S+L +G      L
Sbjct: 443 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 489


>gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1017

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 21/357 (5%)

Query: 149 LSISALSNFMLPYAVFLSFFPV----VVALSTQAIMSMHVLDISLAGM-LATALSFFTYI 203
           L+++++       A+      +    V  L           +  L  + L    +     
Sbjct: 216 LALNSMLAEEGVQALVAVPLALGTETVGILYVNDFAPREYDENHLCILDLLANQAAHAIQ 275

Query: 204 TYHLFKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
              LF++  +     ++  + L A +    +      +     N AKS+F+++MSHELRT
Sbjct: 276 KARLFETIEQEKAELKSLNEHLEARIMERTADLTSANEALTRANQAKSQFISNMSHELRT 335

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL +I GFSE +    +GPL NET  +Y+ +I+ SG+HLL LIN ILDL++IEAG+  L 
Sbjct: 336 PLTSINGFSEFLIDGFVGPL-NETQTKYLKNINISGKHLLELINGILDLAKIEAGKMTLK 394

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              + +  ++ E +++LQ  A + ++ +  + D ++  +  D    +Q++ NL SNA+KF
Sbjct: 395 LEKVDVAALLDEILLVLQGYATKTSVRLLLECDAAIPGIVLDRTKFKQILYNLCSNAIKF 454

Query: 383 TAIGGRVHVTVGWTSG-------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           +  GG V + V + +                  ++I D G GI+  +   +   F Q   
Sbjct: 455 SPQGGEVRIVVDYNNSAAGQHNDDELESYARLTVAIHDEGIGISPEDQVHIFNPFEQADG 514

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           +     +G GLGL + Q ++  HGG   + S   +G   +  LP    +   P +  
Sbjct: 515 SHSRNYEGTGLGLTLTQRLVEMHGGSIEVNSAPDKGSCFVFTLPVEF-MQKAPVEKT 570


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 135/263 (51%), Gaps = 6/263 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +      ++ +  AE+ N +KS FLA+MSHE+RTPLN I+GF  ++         +
Sbjct: 407 ITEQKRTYLELNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLL----YKDEKD 462

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I  S   L++++N+ILD S+IE+G   + +   +++D + + I++ + RA+
Sbjct: 463 IKKQEKLKIIKDSSYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAK 522

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQY 402
           EKNI I   ID  +   +  D    +QV  NLLSNA+KF+     V V V +       Y
Sbjct: 523 EKNITIKLSIDDKIPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIY 582

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D+G GI+  +  T+  +F Q   +      G GLGL I + ++   GG+  + S+L
Sbjct: 583 CEVLDSGVGISPSKTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSEL 642

Query: 463 REGVEVIAILPNTRVLNFIPEDN 485
             G      LP       I +D+
Sbjct: 643 GVGSTFYFTLPIIEAKEDIDKDD 665


>gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 905

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 23/374 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             +         T +    +LI ++ S L  F L  +V     P+   +     +    L
Sbjct: 163 ATDRAMLLQYRDTFFAVIMVLIGVAFSTLFGFRLVKSV---TQPITNMVQAVHKIREGRL 219

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDE 237
           D  ++G L   L         + K+  +      +          + + ++E+     D 
Sbjct: 220 DTRVSGQLTGELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDM 279

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +KRA+E    KS FLA+MSHELRTPLN ++GF+  +   ++ P    +  +Y+  I +S
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKS 335

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            ++LL +IN+ILD S++EAG+ +L     SL D + E + +L   A +K +E+  ++D  
Sbjct: 336 ARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLRVDAD 395

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGI 412
           +   +  D   ++QV+ NL  NA+KFT   G V V +  T      +     I+D G GI
Sbjct: 396 VPDYLTGDPMRLQQVLTNLTGNAIKFTEQ-GNVDVHIEQTGSGNHKVRLNVQIRDTGIGI 454

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++ +   +  +F Q   +I     G GLGL I Q ++   GGQ    S+L +G      L
Sbjct: 455 SQEQQHQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSL 514

Query: 473 PNTRVLNFIPEDNH 486
                ++ +P+ + 
Sbjct: 515 DVE--VSPLPQTDQ 526


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 4/254 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E      +L+      +++    +E +  KS  +A +SHELRTPL +I G+ E++   TM
Sbjct: 399 EIRKSNEKLKKQAEELEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTM 458

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +  E+ K+ +   +++   L  LI+ +LDLS+IE G  E+    I+L ++V   +  L
Sbjct: 459 GAIT-ESQKKCLEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTL 517

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A EKNI I  KI+     +  D+  + QV+ NL+ NA+KF+ + G+V +      G 
Sbjct: 518 KPLADEKNINIIYKIND--IIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQA-LKEGN 574

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +I I DNGPGI + ++  +   F Q     K  + G GLGL + +SI+  HGG   + 
Sbjct: 575 SVHIKIIDNGPGIPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVE 634

Query: 460 SKLREGVEVIAILP 473
           SKL  G     I+P
Sbjct: 635 SKLGSGSVFHIIIP 648


>gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
            6578]
          Length = 1278

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            ++  + A+    E ++ AE    AKS FLA+MSHE+RTPLNAI+GF++++         +
Sbjct: 774  MSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS----FPS 829

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 Y+  I  SG++LL LIN+ILDLS+IEAG+  LS S + L   + E   + + + +
Sbjct: 830  GKEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 889

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
             K +       P+L  +V  DE  +RQV+ NL+ NA+KFT   G V V V        S 
Sbjct: 890  NKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQ-GHVKVQVRGTLHTEESK 948

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                IS++D G GI   E   +  SF Q S        G GLGL I++ ++   GG   +
Sbjct: 949  VDLTISVEDTGIGIRPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISV 1008

Query: 459  RSKLREGVEVIAILP 473
             S+  +G      +P
Sbjct: 1009 ESEYGKGTTFTVRIP 1023


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E  +A++   + +  AE  N+AKS+FLA+MSHE+RTP+N I GF E++E   +     
Sbjct: 303 ITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSL--- 359

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++ +   +   LLN+IN+ILD S+IEA +  L   + +L  ++ + + +   +  
Sbjct: 360 -EQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTL 418

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK I+++  IDP++   V  D   ++Q++ NLLSN VKFT   G + + V +     +  
Sbjct: 419 EKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDA-GEIAIKVDYFEEENEIA 477

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G GI+  +I  +  SF Q   +      G GLGL I + ++    G+  + 
Sbjct: 478 LLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEITVD 537

Query: 460 SKLREGVEVIA 470
           S L +G     
Sbjct: 538 SVLDKGSTFRF 548


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/447 (22%), Positives = 169/447 (37%), Gaps = 26/447 (5%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
           +      VA +       P+  ++ + TL V    L +   +        E         
Sbjct: 148 MSFLPAAVAQVVLANITLPVLLVYPVATLLVCQLFLQMEHHISVEQELEQER-------- 199

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
                  L   +  L+        Y   Y   +  +A     L    +   +       V
Sbjct: 200 --NKLDSLIQAVPDLLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVR-EMLPPRAAEV 256

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              + Q   +          +   +   +  ++       V+           I++ +  
Sbjct: 257 CLEALQEAEATGHSHGRQFFLPLPSGEIWFELSVARKTGPVEDQPRFVVLSRDISDRKQH 316

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E R  AE  + AKS FLA+MSHE+RTP+N ++G + ++    + P      ++Y+
Sbjct: 317 EKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTELSP----EQEQYL 372

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I  S   L+ LI +ILDLSRIEAGR  L     SL   ++E +   Q +  +K I I 
Sbjct: 373 ENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQINQKKISIH 432

Query: 352 QKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
            +I   +  +   D+   RQ++LNLL NA+KFT  GG V +T    +        ++++ 
Sbjct: 433 TEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGG-VTITAQLVTSEENRVLIHLAVS 491

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+    +  +   F Q   +      G GLGL I + +    GG+    S    G 
Sbjct: 492 DTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAESGAEGGS 551

Query: 467 EVIAILPNTRVLNFIPEDNHESTQYKC 493
                LP       +PE      +  C
Sbjct: 552 TFHVELPF-----LLPEQTDRQQERNC 573


>gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 601

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 172/436 (39%), Gaps = 20/436 (4%)

Query: 45  LFRVSPILPLFVLLVANIGTWFT--QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
             R      L     A   +        +   +S+  + +    L L  +V ++      
Sbjct: 24  RTRYGGFFYLLAFWAAVFSSALARDHLVLIGFFSVCFILLQIYRLVLYFQVYSAQHLDFL 83

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
            Y  +   +    A     +   L          +TI   ++  I++    +        
Sbjct: 84  AYSAKYAFVYNASASVWVSSSAWLFYINPVVDLAVTINMLSSAGISIGGITVLAPAYKIM 143

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                           +      ++ +AG++     F         ++  + L      +
Sbjct: 144 RSYWLLICWPYALASVLFISEPGNLIIAGLILGYGLFIFVTGKQQNRTYWQAL------N 197

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D +   E A    +  ++ AE    AK+ FLA+M+HE+RTP+N +LG ++++ +  +   
Sbjct: 198 DNLKLSEQA-EELERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLLAMGDL--- 253

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  K+ +  I+ +G+ L+++IN ILD S+I A +  L +      ++V E  ++L  +
Sbjct: 254 -NEKQKQQVTVINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEVKLLLAPQ 312

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
            ++K I +   I+   S V  D   + Q++ NL+ NA KFT   G + + V         
Sbjct: 313 FEKKPITLKSSIENIPSFVLGDPFRLHQILYNLVGNAFKFTEK-GEISIEVSSKESDAEN 371

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S+KD G GI+  +   +   F Q S       +G GLGL I Q ++   GG   
Sbjct: 372 TVILSFSVKDTGIGISPEDQEQIFEQFYQVSH-FDPNIRGTGLGLSITQRLVELMGGTIS 430

Query: 458 IRSKLREGVEVIAILP 473
           + S++  G      +P
Sbjct: 431 LTSEIGVGSRFTVDIP 446


>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 725

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 2/256 (0%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I E++ ++    + +  AE  N +KS FL++MSHELRTPLNA++GF++++  E  
Sbjct: 467 ESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEEGF 526

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           GPL N+  K ++G+I  SG+HLL LINEILDLS+IEAG+ E   +  S+ +   E   +L
Sbjct: 527 GPL-NKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDIL 585

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
                +K I I  +I   ++++++DE    QV+ NL+SNA+KFT  GG V V+    +G 
Sbjct: 586 FPVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKVSA-RKNGD 644

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+KD G GI E ++  +   F Q         +G GLGL +   ++   GG+  + 
Sbjct: 645 MLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQLMGGEICVF 704

Query: 460 SKLREGVEVIAILPNT 475
           S+   G E I ++P  
Sbjct: 705 SQPGIGSEFICMIPLK 720


>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
 gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
          Length = 1272

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            ++  + A+    E ++ AE    AKS FLA+MSHE+RTPLNAI+GF++++         +
Sbjct: 768  MSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS----FPS 823

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 Y+  I  SG++LL LIN+ILDLS+IEAG+  LS S + L   + E   + + + +
Sbjct: 824  GKEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 883

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
             K +       P+L  +V  DE  +RQV+ NL+ NA+KFT   G V V V        S 
Sbjct: 884  HKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQ-GHVKVQVRGSLHTEESK 942

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                IS++D G GI   E   +  SF Q S        G GLGL I++ ++   GG   +
Sbjct: 943  VDLTISVEDTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISV 1002

Query: 459  RSKLREGVEVIAILP 473
             S+  +G      +P
Sbjct: 1003 ESEYGKGTTFTVNIP 1017


>gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake]
 gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ehrlichia canis str. Jake]
          Length = 470

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 1/263 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +   ++++   A     E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+++ E+
Sbjct: 205 YKNTKILSKQYDANLKLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSES 264

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           MG ++N  YKEYI DIH SG HLL+LIN+ILD S++EA +  +      L  I+  C  M
Sbjct: 265 MGAIDNVHYKEYINDIHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNM 324

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397
           +  RA++  +++ + +  +   + AD K M+QVI+NLLSNA+KFT   G V + V +   
Sbjct: 325 MVPRAEQAKVKLEKVLPSNKVIMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIE 384

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +   I + DNG GIA+ ++  V++ FGQ         +G GLGLP+++ ++    G F 
Sbjct: 385 EKLIDIEVIDNGIGIAQQDLYKVMSIFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFK 444

Query: 458 IRSKLREGVEVIAILPNTRVLNF 480
           I+S+   G  V    P T  L  
Sbjct: 445 IKSEPNLGTIVTLTFPYTDTLEE 467


>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 641

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 153/325 (47%), Gaps = 7/325 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           + +      +      + V+L    I+   + ++       +   +   +          
Sbjct: 311 IRDQTFVVGLIGLLIALTVSLLLNRIIIKPLDELKHGVQWISGGDYTKKVNVTTDDEFGM 370

Query: 214 ILSCQAE-KDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILG 269
           +     E  D + +  E  K  ++E ++     +E +  KS  +A +SHELRTPL +I G
Sbjct: 371 LARVFNEMADQINSSNEKLKKHAEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKG 430

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + E++   TMG + NE+ ++ +     +   L  LI  +LDLS+IE G  E+   A+++ 
Sbjct: 431 YVELVLDGTMGTI-NESQRKCLQVADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVK 489

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           D V + I  L   A EKNI++ Q I   L  + AD+  + QV  NL+ NA+KF+     +
Sbjct: 490 DTVSDVIEYLTPLATEKNIKLKQDIKDLL--INADKDRITQVFTNLIENAIKFSPANESI 547

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +    T     +I++KDNG GI + ++  +   F Q   + K  + G GLGL + +SI+
Sbjct: 548 MIIGKETENGDVHITVKDNGAGIPKKDLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSII 607

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG   + S+L  G     +LP 
Sbjct: 608 QAHGGTIWVESELGRGSTFHIVLPA 632


>gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 375

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 3/276 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+    ++   +L   A +D    + +  +    E     E  N AK RFLASMSH
Sbjct: 96  FPVEISLSPLRTPEGLLVTSAIRD--TTDRKRIERSLQEKNAELERANQAKDRFLASMSH 153

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN I+GF+E +     GP+ N   KEY+ DI   G+HLL+LIN++LDL +++AG+
Sbjct: 154 ELRTPLNGIIGFAEFLADGKPGPV-NGKQKEYLEDILNGGRHLLHLINDMLDLVKVQAGK 212

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            EL  +   + D + E    ++  A  K I +  +I P  S +  DE+  +QV+ NLLSN
Sbjct: 213 LELHLATFRIEDAIEEVCAGVRPLADNKRIGVHVEIAPGFSPITHDEQRFKQVLYNLLSN 272

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG+V V V         +S++D G GI   +I  +   F Q          G 
Sbjct: 273 AIKFTDDGGQVEVKVEQRGADRFCLSVRDTGIGIKPEDIQRLFVEFEQLETGHARRFGGT 332

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLGL + + I+   GG   + S +  G      LP 
Sbjct: 333 GLGLALTRKIVELKGGTISVESAVGRGSTFSVTLPL 368


>gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
 gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
          Length = 1455

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 + + K+L+  A    +          + E + RAE+ N AKS FL+++SHELRTP
Sbjct: 942  ASRFTQEDKKLLTTIAINVGVALHNADLYEQAREAKARAEDANEAKSAFLSTVSHELRTP 1001

Query: 264  LNAILGFSEVIE----LETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILD 310
            L ++LGF+++I      +    +  +  K         E +  +   G+ L  LIN++LD
Sbjct: 1002 LTSVLGFAKIIRKRLTEKIFPAVTVDDQKIKRTMKQVSENLDVVVSEGERLTTLINDVLD 1061

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            L++IE+GR + +   I L D++   +       +EK +++ + +   L  +  DE  + Q
Sbjct: 1062 LAKIESGRMDWNMKPIFLQDVIGRAVSATSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQ 1121

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            V++NLLSNAVKFT   G V +       +   + ++D G GIAE +   +   F Q    
Sbjct: 1122 VVINLLSNAVKFTKK-GSVTIDAYREENQ-LIVEVQDTGIGIAEEDKHKIFERFRQAGDT 1179

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-----------NTRVLN 479
            +    QG GLGLPI + I+ +HGG   ++S+   G      +P             R+L 
Sbjct: 1180 LTDKPQGTGLGLPICREIIEHHGGIIWMKSEPGVGSTFFFSIPMMGEGSDQPIQLERILK 1239

Query: 480  FIPEDNHESTQYKC 493
             + +    S+Q K 
Sbjct: 1240 SLKKQIKHSSQVKS 1253


>gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 864

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 169/305 (55%), Gaps = 5/305 (1%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRAEE 244
           +L G      +  T I      S       QA  D L     +   L+   +  + RAE+
Sbjct: 552 TLEGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQTDLAKKYEMAKIRAEQ 611

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FLA+MSHELRTPLNAI GFSE++  E  GPL +  YKEY GDI  SGQHLL L
Sbjct: 612 ANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDILSSGQHLLAL 671

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+ILD+S+IEAG+  L    +S+ ++V + + +++ RA++  +++   + P L  + AD
Sbjct: 672 INDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHL-PQLPDIQAD 730

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + ++Q++LN+L+NA+KFT  GG + V+   T     ++ + D G GIA  ++  +   F
Sbjct: 731 YRALKQILLNILTNAIKFTPSGGTITVSAVPT-DSFMHLYVADTGIGIAPKDMERLARPF 789

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q        ++G GLGL + +S++  H G+  + S + +G  V  ILP T+       D
Sbjct: 790 EQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILPLTQTSPGASAD 849

Query: 485 NHEST 489
           +   T
Sbjct: 850 DTPDT 854


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 136/256 (53%), Gaps = 9/256 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL++ ++   E R+RA   + AKS FLA+MSHE+RTP+N +LG +E++    + P   
Sbjct: 969  ITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDP--- 1025

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               K +   I +SG  LL +IN+ILD S+I+AG+  L  +  +L + + +   ++  RA+
Sbjct: 1026 -KQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 1084

Query: 345  EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR-GQ 401
            EK++E+  +++P L S+   D   +RQ++ NLL NAVKFT  G   V VT          
Sbjct: 1085 EKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKL 1144

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             IS+ D G GI E ++  V   F Q   +     +G GLGL I   ++   GG   + S 
Sbjct: 1145 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESA 1204

Query: 462  LREGVEVI--AILPNT 475
              +G        LP  
Sbjct: 1205 EGKGSTFWFSVTLPRA 1220


>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
 gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
          Length = 1410

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 12/251 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + E    +    + +++AE  +  KS+FLA+MSHE+RTP+NAI+GF+E++  +       
Sbjct: 900  LTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQV----TE 955

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               K YI  I  +G+ LL LIN+ILDLS+IEAG+ +L + A++   +  E   +  +  Q
Sbjct: 956  PRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINIQ 1015

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K ++    ID +L   +  D   +RQ++ NLL NAVKFT   G V + V          
Sbjct: 1016 RKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQ-GYVKLKVSACDVDEHHS 1074

Query: 401  ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 I + D G GI E +   +  +F Q          G GLGL I Q ++   GG   
Sbjct: 1075 KLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIW 1134

Query: 458  IRSKLREGVEV 468
            + S   +G   
Sbjct: 1135 VESTPGQGTTF 1145


>gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina
           mazei Go1]
          Length = 716

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
              A     + ++ AE  N  KS FLA+MSHELRTPLN+I+GFS+++  +  G L NE  
Sbjct: 466 ERKAIEKLLQEKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYGKL-NEKQ 524

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y  +I +SG+HLLNLIN+ILDLS++EAG+ EL      L D +     +L   A  KN
Sbjct: 525 LKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSPIAARKN 584

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I+I   ++  L+++ ADE    Q++ NL+ NA+KF+     V +      G     ++ D
Sbjct: 585 IKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARR-KGEFLETTVTD 643

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   +   F Q +       QG GLGL + + I+  HGG    RS   EG  
Sbjct: 644 IGIGIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRSIPGEGST 703

Query: 468 VIAILP 473
               +P
Sbjct: 704 FAFAIP 709


>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
 gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
          Length = 574

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 11/317 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDDL 224
              V +A       S  + +  +              +       +  +I       + L
Sbjct: 254 LVSVAIAAIVAWRTSRAIAEPVITVTQVAEQVARKHNFDLRAPVTTEDEIGLLAKSLNRL 313

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  +        + ++ AE  + AKS FLA++SHELRTPLNA++G S+++E +      +
Sbjct: 314 IERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLS 373

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             +   +  I+ +G+HLL+LINEILDLS+IEAG+  L      +  ++   ++ ++   +
Sbjct: 374 ADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVKPAIE 433

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------ 398
           +    +    D  L +++AD+  MRQV+LNLLSNA KFT   G+V +TV           
Sbjct: 434 KNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFT-TNGKVTLTVKREKEELRLDA 492

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D G G++  +   +   F QG  +      G GLGL I++      GG+ 
Sbjct: 493 PLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEI 552

Query: 457 LIRSKLREGVEVIAILP 473
           +++S+   G      LP
Sbjct: 553 IVKSQPGLGSTFTIRLP 569


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++RAE    AKS FLA+MSHE+RTP+NA++GF+ ++    +  +  
Sbjct: 690 LTERKKVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSV-- 747

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++YI  IH SG  LL +I++ILD S+IE G  EL +  I LI+ +   + ++   A 
Sbjct: 748 --QRDYIETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDAS 805

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400
            K + +  +++P +   +  D   +RQ+++NLL NAVKFT   G V + V       G  
Sbjct: 806 RKGLSVSYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDK-GFVRLDVSALPVEDGHE 864

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+G GI++  +  +  SF Q   +      G GLGL I + +    GG     S
Sbjct: 865 IQFRVTDSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAES 924

Query: 461 KLREGVEVIAILPNTRVLNFIPE 483
              EG      +     +   P+
Sbjct: 925 VPGEGSSFYFTIQAEASIEPYPK 947


>gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
 gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
          Length = 558

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 1/300 (0%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
              ++      + +L       L            +       ++    L A +    + 
Sbjct: 507 VIGSLSVDRTHNQALTQDDLDVLVTLASQVAIALDNAQAYREIESLNAGLEARVRERTAE 566

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +    + ++ +  KS+FLA +SHELRTPL +I+GF++ +    +G L N   ++Y+  I
Sbjct: 567 LEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSL-NMKQEQYLTRI 625

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G  L  +I ++LDLSR+EAG+  LS   + L  +V + +  L   A  K++ I  + 
Sbjct: 626 KANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQS 685

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 VWAD+  + Q++ NLL NA+K+T  GG+V V +   +     I I+DNG GI  
Sbjct: 686 PDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPS 745

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +P +   F +     +S  +G+GLGL I + ++  HGG   +RS++ +G E    LP 
Sbjct: 746 DALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEFTFTLPL 805


>gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 646

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 9/324 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              +L      +F  +V  +     + +  + +    +                ++    
Sbjct: 150 FALLLVGESIKTFLLMVGVIYIALSLIVKPISLLSRAVSDFKDGETPSRLRLPARAFDDE 209

Query: 215 LSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +S  AEK +  I  L    +     +++AE  N+ KS FLA+MSHE+RTP+N I+G + +
Sbjct: 210 ISLLAEKYNSSIERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASL 269

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   +        K+Y+  I+ S + LL++IN+ILD S+IEAG+  +S     L D+V 
Sbjct: 270 LKEMDLSS----EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVE 325

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   +  L+A  KN++   ++   +   +  D K ++QV+ NLL NAVKFT  G    V 
Sbjct: 326 QMCAIYTLKAHAKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVV 385

Query: 393 VGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 +        + D+G GIA+ +   V   F Q   +      G GLGL I + ++
Sbjct: 386 AKELDAQHIPHIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLV 445

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
           +  GG+  ++S++  G      +P
Sbjct: 446 SLMGGELELKSEVGLGSCFEFSVP 469


>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1426

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 130/271 (47%), Gaps = 14/271 (5%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +       ++    +EL +     +  ++ AE  N AKS F+A MSHE+RTP+N ++G 
Sbjct: 743  ALAQAQLLEQERKQRSELALKNIALEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGM 802

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            + ++    +    +E  ++ +  I  SG  LL +IN+ILD S+IE+G+ EL E   +L +
Sbjct: 803  TGILLDTPL----SELQRDCVETIRNSGDALLMIINDILDFSKIESGKLELEEQPFNLRE 858

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             +   + +L  +A EK +E+    DP+    +  D   +RQ+++NL+ N +KFT   G V
Sbjct: 859  SIESSLDLLAPKAAEKGLELAYIFDPNTPETILGDVTRLRQILVNLIGNGIKFTEK-GEV 917

Query: 390  HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V V                  ++ D G GIA      +  +F Q   +      G GLG
Sbjct: 918  VVNVSSYPQEKSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLG 977

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I++ +    GG+  + S+  +G      +
Sbjct: 978  LVISKRLTQLMGGEISVDSQQGKGSTFKFTI 1008


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 2/333 (0%)

Query: 154  LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            + + +            +  ++ + + S                     +   +    V 
Sbjct: 757  MISELRLALTTAFATGELQTVAYKLLFSGQERFFEARIKAIPTGDEAIVLVRDITAWRVA 816

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             L  QAE+D L   +    +               K  FLA+MSHELRTPLN IL  SE 
Sbjct: 817  ELQLQAERDLLAQRVAERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSES 876

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +  E  GPL NE  +  I  I  SG+HLL LIN++LD+++IEAGR EL +  +++ D+  
Sbjct: 877  LLEELRGPL-NERQRASIQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCE 935

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++++ +A +K I +   ID   +   AD + ++Q+++NLLSNAVKFT  GG V + V
Sbjct: 936  SSLVLIKEQAAKKQIRLHCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRV 995

Query: 394  GW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               T+      ++ D G GIA  ++P +   F Q   ++    +G GLGL + + ++  H
Sbjct: 996  TTDTAQGTIAFAVSDTGIGIAPDQLPRLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLH 1055

Query: 453  GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            GG   + S    G      LP   +   +P   
Sbjct: 1056 GGSVSVTSTPGSGSVFTVTLPYQPLQYAVPNPA 1088


>gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 850

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 9/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +      +++++ AE  N AKS+FLA+MSHE+RTPLN ++G  ++    T+    N
Sbjct: 345 ISEHKSMMEELNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDL----TLMSDLN 400

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +         LL LINEILD S+IEAG+ EL  S+  L D++ + +   +++A+
Sbjct: 401 NEQRDNLETAKSCVDSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAK 460

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
           E N+ +   I   L   +  D+  ++QV+ NLLSNA+KFT   G +++ V      +   
Sbjct: 461 EHNVMVDYSISSDLPEYIIGDQLRIKQVLNNLLSNALKFTEA-GSINLKVDINTIDNDEF 519

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA+ ++  +  SF Q   +      G GLGL I++ ++   GG   I+S
Sbjct: 520 ILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKS 579

Query: 461 KLREGVEVIAILPNTR 476
           +   G      +   R
Sbjct: 580 EKGIGSTFSFTIKLER 595


>gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 558

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554


>gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 1070

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 10/256 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+      +++A+  N AKS FLASMSHELRTPLNAILGF++V++       
Sbjct: 577 RDITERKQAEEALKRAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQR---DHS 633

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E +K+ +  I RSG+HLL LIN+IL++++IEAGR  L+++   L  ++     ML L+
Sbjct: 634 LKEEHKQNLDIIGRSGEHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLK 693

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400
           A+EKN+++  + +P L   +  DE  +RQV++NLL NA+KFT  GG +  +     S   
Sbjct: 694 AEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTSQQSPNN 753

Query: 401 QYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           Q I     ++D GPGIA  E+  +  +FGQ      S  +G GLGLPI++  +   GG+ 
Sbjct: 754 QAIILTFEVEDTGPGIAIEEVDQLFEAFGQTETGRNSN-EGTGLGLPISRKFVELMGGEI 812

Query: 457 LIRSKLREGVEVIAIL 472
            + S L  G      +
Sbjct: 813 SVSSILGRGSLFTFTI 828


>gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel]
 gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel]
          Length = 469

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 2/338 (0%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
              A L    S   L   +    V   F  V         + +      LA  L+ A   
Sbjct: 124 LSGAQLATLTSGGVLRGAVADGRVSAIFPVVSQDGGPTVFLQVVKDCKKLARALSRAHGM 183

Query: 200 FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F         S V ++     K   L++    A     E ++ AE E+++KS+FLA++SH
Sbjct: 184 FVIPIGATMISCVCLVVLFYRKSAKLLSSQYDANLELQEQKETAERESVSKSQFLANVSH 243

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LIN+ILD S+ EA +
Sbjct: 244 ELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYISDIHQSGVHLLSLINDILDFSKAEANK 303

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             +      L  IV     M+  RA++  +E+ +++      + AD K M+QVI+N+LSN
Sbjct: 304 LTVEFVKFDLSKIVDSSFTMVLPRAKDAKVELKKEMPEEPVVMLADPKRMKQVIINILSN 363

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           +VKFT  GG V +      G    + I D G GIA+ ++  V++ FGQ         +G 
Sbjct: 364 SVKFTPEGGLVKL-CTEIRGEQLVVEISDTGIGIAQQDLYKVMSVFGQADSKHSRKYEGT 422

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGLP+++ ++    G F I+S+   G  V    P+ +
Sbjct: 423 GLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLTFPHKQ 460


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           EL++     +  +  AE  + +KS F+A++SHE+RTP+NAI+G +++     +       
Sbjct: 255 ELKIINRELEIAKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSS----K 310

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E+I  I  SG+ LL LIN+ILD S+IEAG+  L E   +L  ++ +   +   +    
Sbjct: 311 QREFIKIIISSGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVAS 370

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQ 401
             E+   I P +   +  D   +RQV++N+ +NA KFT+  G + +TV            
Sbjct: 371 QTELVIDIRPGVPQRIIGDPLRLRQVLVNITANAFKFTSK-GEIIITVSADQINATKTEI 429

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             +IKD G GI E   P +  +F Q   +      G GLGL I++ I+   GG    RS+
Sbjct: 430 VFAIKDTGIGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSR 489

Query: 462 LREGVEVIAIL-PNTRVLNFIPE 483
             +G      + PN  V   + E
Sbjct: 490 PEDGSTFFFTITPNVAVETSLIE 512


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 10/294 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
               T    ++ + +    AE        +  +   ++ R +AE    AKS FLA+MSHE
Sbjct: 517 CVRETREWTRAEIDLFVLLAELLVNARHRKSREEELNQARLQAEHATRAKSEFLANMSHE 576

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN ++G S ++    +        + +   +  S Q LLNLIN+ILDLS+IEA R 
Sbjct: 577 IRTPLNGVIGMSGLLLDTELDS----QQRSFAETLKTSAQTLLNLINDILDLSKIEADRL 632

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           +L     +L   V++   +L  +A EK +++   I P +   +  DE  + QV++NLL N
Sbjct: 633 QLETKGFNLETTVKDSAGILNYQAMEKGLKLGYVIHPGVHHCLLGDEGRLSQVLVNLLGN 692

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT+  G+V + V               + D G GI E +   + T F Q + ++  +
Sbjct: 693 AIKFTSQ-GQVDLEVSPVQEEADHVRLLFEVHDTGIGIPEEKQDQLFTPFHQLNTSVTRS 751

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             G GLGL I +S++   GG+  ++S    G          +    + ++  E 
Sbjct: 752 FGGTGLGLAICKSLVQMMGGEIGVKSSKGRGSTFWFTAGFEKDPAPLDKEAQEK 805


>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 31/408 (7%)

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTI 139
            +    +        +              +  +I  G   W L                
Sbjct: 70  GMGCLEVGNDGDFELAASDPPSCRAALQAEIDAKIMDGTFAWAL---------NRNQAIT 120

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
             SA     L +  ++       +F +  P  +A      ++        A  +      
Sbjct: 121 VPSADGEYTLLLHVIATRSEVQGMFAALLPAEIATMDVPSLN--------ALSIVLYTCA 172

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +   +  L          +     L   +    S     R+ AE  NLAKS FLA+MSHE
Sbjct: 173 YALESATLHAM------LRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHE 226

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNA++GF++V+     G + +    E++G + +S +HLL+LIN+ILDLS+IEA R 
Sbjct: 227 LRTPLNAVIGFTDVLLSRIYGEVTD-IQAEFLGYVLQSSRHLLSLINDILDLSKIEADRM 285

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSN 378
           EL  S + +  +    ++M++ RAQ+  I + +++ P+   ++ ADE+ ++Q++ NLL+N
Sbjct: 286 ELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVAPAVPPTITADERKLKQIVFNLLAN 345

Query: 379 AVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           AVKFT  GG V ++VG         G  I+++D G G+A G++  +   F Q   +    
Sbjct: 346 AVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGIGLAAGDLERIFDPFVQADGSATRR 405

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
            +G GLGLP+ + ++  HGG     S     G     I+P +      
Sbjct: 406 YEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFRVIIPPSPPPTHS 453


>gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 617

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 154/279 (55%), Gaps = 7/279 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                I   +    +++   + E  +   ++   + ++++      E + AKS F++ +S
Sbjct: 346 PSIIRIETSIGIRELEVRKLEPENPNDNQKIITMRDVTEQ-----RELDRAKSNFISMVS 400

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN++LGF+ VI     GPL++   +E++  I  S +HL+ L+++ILDLSR++AG
Sbjct: 401 HELRTPLNSVLGFANVILSGATGPLSD-RQREFLEYIQASSRHLVQLVSDILDLSRMDAG 459

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            + L +S +    I ++ +  L   A E+NIE+    D  +  + AD + + QV++NL+ 
Sbjct: 460 TFTLHKSKVLPEIIAKQVVSQLSGLAAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVG 519

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG+V V V    G     S+ D GPGI+E ++  +   F Q  +  ++A +G
Sbjct: 520 NAIKFTPPGGKVIVRV-RNQGDHVLFSVSDTGPGISEEDMDRIFERFYQPIMNPQAATKG 578

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL IA+S++  HGG+  + S   +G      LP   
Sbjct: 579 TGLGLAIAKSLVEQHGGKIWVDSTPGQGATFYFTLPIKP 617


>gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 1090

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 17/344 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK- 213
               +       F            +     ++ L          + +I+  +   +   
Sbjct: 478 MALTVHPEYADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDGRYHWISTQIINVDNPY 537

Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                 +      D+   E E  +         A   N AK +FL++MSH++RTP+NAI+
Sbjct: 538 SNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAII 597

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G S +         + E   E +G I+ SG+HLL+LIN+ILD+S+IE+G+  L +   +L
Sbjct: 598 GMSAIASAHL---DDRERIMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNL 654

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            +++ + + +++ +A  + I +  +       +V  D   +RQV +N+LSNAVK+T  GG
Sbjct: 655 AELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCINILSNAVKYTPEGG 714

Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           ++ + V          +       D G G+    +  +   F + S +  S   G GLG+
Sbjct: 715 KIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGM 774

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            I ++I+    G   + S   +G      LP    L  + +D  
Sbjct: 775 AITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK--LQDVSQDET 816


>gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1146

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 175/387 (45%), Gaps = 5/387 (1%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           +LV     G    +L +      +        +++ L+ ++I+   +      +F     
Sbjct: 349 ILVPFSYNGKLKGVLEIGFTEEISESSKDFIVNSSQLLGVAINTAESRETLKVLFEQTQQ 408

Query: 170 VVVALSTQAIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
               L +Q        +  L    +L  +          L + N+++       ++   +
Sbjct: 409 QAEELESQQEELRVSNEELLSKTELLQASEEELRVQQEELRQINIELEEKAKVLENSNMQ 468

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E AK+      +  E+ +  KS FLA+MSHELRTPLN+IL  +++++    G L+ +  
Sbjct: 469 IESAKNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDET 528

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K Y   IHR+G  LL+LIN+ILDLS+IE+G  EL+   +S+ D+  +   +    A  K 
Sbjct: 529 K-YASVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTKG 587

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +    + DP L   ++ D   + Q++ NLLSNA KFT+  G V V +          S+K
Sbjct: 588 VNFVIERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTVSVHMS-EKDDFLRFSVK 646

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E +   +  +F Q   +      G GLGL I++ +     G   ++S++ +G 
Sbjct: 647 DTGIGIPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKGS 706

Query: 467 EVIAILPNTRVLNFIPEDNHESTQYKC 493
           E    +P   ++     +     Q K 
Sbjct: 707 EFTLNIPTKELVKKDSGETDAVEQVKS 733


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 169/391 (43%), Gaps = 7/391 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  + V     G    ++ +     +T   L  +++    I + I    N          
Sbjct: 387 RNVVAVPVFRNGEVIGVIEIGSLNCYTSLQLEFFQNIGANIGIGIHVAQNRKKLQDFLEE 446

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q      +     A    + T+          L +SN ++       ++ 
Sbjct: 447 TQAQAEELQAQHTELEGLNAELEAQSQKIQTSEEELRVQQEELLQSNQELEERTTLLEEK 506

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              ++       +  ++ E+    KS FLA+MSHELRTPLN+IL  S+++         +
Sbjct: 507 NQLIQERNQDIQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSEN---KDLD 563

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           + Y EY   I  SGQ LL LI+EILDLS+IEAG+ +L  +++++ ++  +   M    A+
Sbjct: 564 KEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAK 623

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
            K ++   +++  +  V  D+  + Q++ NLLSNA+KFT   G+V +TV           
Sbjct: 624 NKQLQFAVEVEERIPEVETDKMRLEQILKNLLSNAIKFTTQ-GKVSLTVKKDDSGKFVQF 682

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  +   +  +F Q   + +    G GLGL I++ +    GG+  + SK  
Sbjct: 683 TVTDTGIGIATDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKEN 742

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
            G      LP  RV     +   E +    Y
Sbjct: 743 VGSSFTFSLPVRRVDVIEADVEKEISSKITY 773


>gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1599

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 136/262 (51%), Gaps = 12/262 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+ELE A+    + +++AE  N AKS FLA+MSHE+RTPL  I+G  E++  E     ++
Sbjct: 1031 ISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEI----SS 1086

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E  +  +     S + L  +I++ILDLS++EAGR ELS     L  ++     +   +A+
Sbjct: 1087 ENGRRIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQAE 1146

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             KN+ + + +DP +   +  D   + Q++ NL+ NAVKFT   G+V +       +    
Sbjct: 1147 NKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFT-SHGQVTLRARPADSQDGSS 1205

Query: 401  ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                   ++D GPGI E ++  +  SF Q   + K + QG GLGL I + +    GG   
Sbjct: 1206 KQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNIN 1265

Query: 458  IRSKLREGVEVIAILPNTRVLN 479
            + S   EG   +A +P   V  
Sbjct: 1266 VESAPGEGSTFVAEIPFEVVGQ 1287


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 14/350 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
           L+ + +  AL   +  Y  +    P+  +  + + + S  +     +      +      
Sbjct: 341 LVSSSASFALIALIFFYVHYHIINPLSQLTSAIRRLASKDLTIEIPSVESDNEIGELAAS 400

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +      ++I +       L  +L  +  L    R  A+  N  KS FLA+MSHE+R P
Sbjct: 401 VHVFRNMALQIDNDMLTMQHLQNKLHESLELLTTARNAADAANQNKSEFLANMSHEIRNP 460

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N ++G  +++    +     +  K+Y+  I  S   LL +IN+ILDLS+IEAG+ EL  
Sbjct: 461 MNGVIGMLQLLRFTEL----TDEQKDYLSAIETSADDLLAIINDILDLSKIEAGKIELEI 516

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
           S  SL   + + ++M   RA EK +++  ++D  L   V+ D+  ++QV+LNLL NAVKF
Sbjct: 517 SRFSLRRCINDVLLMQTSRAFEKGVQVEARLDEQLPLEVYGDQLRVKQVLLNLLGNAVKF 576

Query: 383 TAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + +               I++ D G G++   +  V   F Q  +       G 
Sbjct: 577 TEE-GTISIEARLLQKQDDNSIVQITVSDTGIGMSPEVLGKVFDPFIQADVCTTRRFGGT 635

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---RVLNFIPEDN 485
           GLGL I + +    GG+    S+  +G +    LP     +V+   P  +
Sbjct: 636 GLGLTICRQLAELMGGRISATSEEGKGSQFYLELPFRLSTQVVEAEPAAS 685


>gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
 gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
          Length = 773

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E         ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 503 RRLFSFIQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L   
Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFTLDCK 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              L  I+ E +  L  +AQEKNI +   I P L     D + M+Q+ LNL+SNAVKFT 
Sbjct: 623 NTDLEPIISEAVRTLTPQAQEKNIAVTTNITPKL-HAEVDGRAMKQIFLNLISNAVKFTP 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + V   +         I D G GI +  I  +   F Q    +  +  G GLGL I
Sbjct: 682 SGGNIDV-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V  I+P T+
Sbjct: 741 SRSLLELHKGKLEITSKEMKGTTVTIIMPITQ 772


>gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Virginia]
          Length = 442

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              L   +  A+     +    ++ + ++LS Q +          A     E ++ AE E
Sbjct: 154 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 203

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI
Sbjct: 204 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 263

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD S+ EA +  +      L  IV     M+  RA++  +E+ +++      + AD 
Sbjct: 264 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 323

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K M+QVI+N+LSN+VKFT  GG V +      G    + I D G GIA+ ++  V++ FG
Sbjct: 324 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 382

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           Q         +G GLGLP+++ ++    G F I+S+   G  V    P+ +
Sbjct: 383 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 433


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+  +  +      R+ AE  ++AKS FLA+MSHE+RTP+N I+G S ++  E +   
Sbjct: 474 EDISRRKAVEKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDL--- 530

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  ++ +  IHRS   L+ +IN+ILD S++EAGR+EL +   SL +++ E I  ++  
Sbjct: 531 -PDLQRQQLELIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPT 589

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           AQ KN+ +   + P++   +  D+  + QV+ NL+ N++KFT   G++ +TV        
Sbjct: 590 AQRKNLRLHLIVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFTRK-GQITLTVSNQPSPNS 648

Query: 398 ---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G      + D G GIA      V  SF Q   +      G GLGL I++ ++   GG
Sbjct: 649 FANGDMLLFEVADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGG 708

Query: 455 QFLIRSKLREGVEVIAILP 473
           +    S+L +G      LP
Sbjct: 709 RIWFESELAKGTRFSFTLP 727


>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
 gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 937

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  + G L 
Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239

Query: 195 TALSFFTYITYHLFKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +  S           I    ++  + + ++E+     D  +KRA E +
Sbjct: 240 GELDLLKRGINAMASSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I +S  +LL +IN
Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHT----SQQDYINTIEKSATNLLEIIN 355

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     +L ++V + + +L   A+EK+IE+   ID S+   +  D 
Sbjct: 356 DILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVIDIDQSVPEALCGDP 415

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             + Q++ NL+ NA+KFT   G VH+++  T G    +     I D G GI   +   + 
Sbjct: 416 MRIGQILTNLIGNAIKFTDS-GSVHLSLKLTDGSKDKVNIRCEITDTGIGIDPQQQEILF 474

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +FGQ   +I     G GLGL I + ++   GGQ    SK  EG      LP  
Sbjct: 475 QAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTFWFTLPLE 528


>gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 773

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/272 (40%), Positives = 149/272 (54%), Gaps = 2/272 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             LF    ++   +        E+E         ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++   T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ +   
Sbjct: 563 NAILGFSDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTLINDILDMSKIEAGRFTVDCK 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  I+ E +  L  +AQEKNI +   I   L     D + ++Q+ LNL+SNAVKFT 
Sbjct: 623 NIDLEPIISEALRTLIPQAQEKNIFVTTNIATKL-HAEVDGRAIKQIFLNLISNAVKFTP 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + V             IKD G GI +  I  +   F Q    +     G GLGL I
Sbjct: 682 SGGNIDV-CALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFEQVENQLTKTYTGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++S++  H G+  I SK  +G  V   +P  +
Sbjct: 741 SRSLLELHKGKLEIISKEMKGTTVTITIPIKQ 772


>gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
 gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
          Length = 474

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              L   +  A+     +    ++ + ++LS Q +          A     E ++ AE E
Sbjct: 186 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 235

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI
Sbjct: 236 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 295

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD S+ EA +  +      L  IV     M+  RA++  +E+ +++      + AD 
Sbjct: 296 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 355

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K M+QVI+N+LSN+VKFT  GG V +      G    + I D G GIA+ ++  V++ FG
Sbjct: 356 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 414

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           Q         +G GLGLP+++ ++    G F I+S+   G  V    P+ +
Sbjct: 415 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 465


>gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 827

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 149/319 (46%), Gaps = 7/319 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           V+  L++    +  +            L     +       NV      A  ++L  ++E
Sbjct: 249 VLSPLASVTESARRIAHDRRYLGEQIPLGRDREMNELAASFNVMSTELHAFINNLEEKVE 308

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +   + R+ AEE N  K  FLA+MSHE+RTP+NAI+G +++++   +    ++  + 
Sbjct: 309 EKTAELVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHL----SQQQRR 364

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            + D   + + LL +IN+ILD SR+EA R ELS+ A+ L   V     +  ++A+ +NI 
Sbjct: 365 LVDDSSNAAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENIS 424

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
           +   +       +  D   +RQV+ NLLSNA+KFT  GGRV +      +G     ++ D
Sbjct: 425 LSILVGDEAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSD 484

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI + +   +   F Q   +      G GLGL I + ++   GG   + S+  +G  
Sbjct: 485 TGIGIEKDKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAV 544

Query: 468 VIAILPNTRVLNFIPEDNH 486
              +LP  R     P D  
Sbjct: 545 FRVLLPL-RPATGPPADKT 562


>gi|113474406|ref|YP_720467.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
 gi|110165454|gb|ABG49994.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
          Length = 569

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 29/338 (8%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            +  +   V++A+ T   +   +  I+      T  + F         +N +I       
Sbjct: 239 LLLSAITTVIIAIYTTNSIITPLKVITKVAEEVTEQANFEL--QLPVTTNDEIGELTESL 296

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           ++LI+++        E + +AE  N +KS FLA+MSHELRTPLNAI+G+S+++  + +  
Sbjct: 297 NELISKVAEYTEQLQEAKLKAEAANRSKSAFLATMSHELRTPLNAIIGYSDILYEDVLEG 356

Query: 282 LNNETYKEYIGDIHR---SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                YK++I DI R   +G++LL +I++ILD+S+IEAG+  L   +I +  +V++    
Sbjct: 357 G----YKDFIPDIERIKLAGKNLLEMISDILDISKIEAGQVTLYLESIEVNKLVKDVFST 412

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-- 396
            +   ++   +    +  +L S++AD   ++QV++NLLSNA KFT   G + ++V     
Sbjct: 413 AKNITEKNRNKFELVLGENLGSMYADMPKVKQVLINLLSNAAKFT-EDGTITLSVEKVKN 471

Query: 397 ----------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                                   + D G GI E ++  +   F Q   +      G GL
Sbjct: 472 NQQKNNQNHNAKSLSNENYHIVFRVIDTGIGITEEQLKHIFQPFTQADTSTTRKYGGTGL 531

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           GL I + +    G +  ++S+L +G       P  +VL
Sbjct: 532 GLAICKRLCERMGAEITVKSQLGKGSTFTVWFP-EKVL 568


>gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 453

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 7/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R++ E     ++ F+A++SHELRTPL +I GF E +    +   + +T + ++  ++  
Sbjct: 222 ERRKLE---RMRTEFVANVSHELRTPLTSINGFLETLLDGAI--EDPKTARHFLEIMNAE 276

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L NLI+++L LSR+E  +  L++  + L D++   I M + RA+EK I++F  +   
Sbjct: 277 TKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPDK 336

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V  D   + QV++NL+ NA+K+T   G+V V V     +   + + D G GI + ++
Sbjct: 337 LPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREK-VRVYVADTGIGIPQEDL 395

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           P +   F +   A      G GLGL I + I+  HGGQ  + S    G      LP 
Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFSFTLPL 451


>gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 137/268 (51%), Gaps = 8/268 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +   + E D  +  + V   +++E  ++ E     +S F+A++SHELRTPL +I GF 
Sbjct: 187 IHVTPLKDEHDQKVGLVAVFDDITEE--RKLE---KMRSEFIANVSHELRTPLTSIKGFL 241

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E +    +   +    K ++  ++   + L  LI+++L LS+IEA + + +   + L ++
Sbjct: 242 ETLLDGAL--EDKTIAKHFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQEL 299

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +++  ++ + R +EK +     +  +L  V AD   + QV++NL+ NA+K+T  GG++ V
Sbjct: 300 IQKMKLLFKSRLEEKELSFIISLPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEV 359

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           T     G    + +KD G GI E     +   F +   A      G GLGL I + I+  
Sbjct: 360 TAA-VKGSWVEVVVKDTGIGIPEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIEL 418

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479
           H G+  ++SK+ EG      +P  + + 
Sbjct: 419 HNGKVWVKSKVGEGSAFGFTIPIAQTVQ 446


>gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
 gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
          Length = 545

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 541


>gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9]
          Length = 927

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LL  L++S+L  + L   V     P+   +S    +    LDI + G L   L
Sbjct: 174 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 230

Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                   +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    K
Sbjct: 231 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 290

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN+IL
Sbjct: 291 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 346

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L        + + E + +L   A EK +E+  K+D  + + +  D   +
Sbjct: 347 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRI 406

Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +QV+ NL+ NAVKFT  G     V +            +++D G GI+E +   +  +F 
Sbjct: 407 QQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFS 466

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG+  + S+L +G      L
Sbjct: 467 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 513


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 8/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I++ + A+      +++AE  + AKS FLA+MSHE+R+P+N I+G ++++E   +  
Sbjct: 234 LRDISDRKRAEQALATAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLMEYTEL-- 291

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +  +EY+  I  S   LL+LIN ILDLS+IEAG+ EL  S  SL   + + +     
Sbjct: 292 --TDEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLS 349

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397
           +  +K + I   I  +   ++  D+  ++Q++LNLL NA+KFT  GG    V V+     
Sbjct: 350 QIHDKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDE 409

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I + D G GI    +  +   F Q   +      G GLGL I   +     G+  
Sbjct: 410 RVRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKIT 469

Query: 458 IRSKLREGVEVIAILPNT 475
           + S+   G      LP  
Sbjct: 470 VESREGSGSTFSVHLPFA 487


>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
 gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
          Length = 897

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LL  L++S+L  + L   V     P+   +S    +    LDI + G L   L
Sbjct: 144 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 200

Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                   +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    K
Sbjct: 201 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 260

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN+IL
Sbjct: 261 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 316

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L        + + E + +L   A EK +E+  K+D  + + +  D   +
Sbjct: 317 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGLIGDPLRI 376

Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +QV+ NL+ NAVKFT  G     V +            +++D G GI+E +   +  +F 
Sbjct: 377 QQVVTNLIGNAVKFTERGNIDVSVELKASKDENIELQFTVRDTGIGISERQQAQLFQAFS 436

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG+  + S+L +G      L
Sbjct: 437 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 483


>gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
 gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
          Length = 571

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +   + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567


>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
 gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
          Length = 1067

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 10/330 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVV--VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +SI  L    +          V   + L  + + S +         L       +     
Sbjct: 301 ISIVTLLAATVMGLTLSLAKQVTNNLGLVLRFLKSENDDTRPSLDKLIQGKDELSLFAQQ 360

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +  ++    + +      + E AK  ++E +  A + + AKS FLA+MSHE+RTPLN 
Sbjct: 361 VERLTIEREHAKEKLTIAKEDAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNG 420

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G SE++    + P    T ++Y+  I  S Q LL+LIN+ILD S+IE+G   +S  + 
Sbjct: 421 VIGISEILSDTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSA 476

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           S+ + + +   ++  +A+E+ I +   I P     V  D+  +RQ+++N +SNAVKFTA 
Sbjct: 477 SIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAE 536

Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG  + +     +        S++D G GI + +   +   F Q   +      G GLGL
Sbjct: 537 GGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGL 596

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I+  ++   GGQ  + S   +G      L
Sbjct: 597 AISTQLVELMGGQIQLDSVKGKGSCFYFDL 626


>gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39]
          Length = 959

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A    +  ++ AE  N AKS FLA+MSHELRTPLNAI+G+SE++  E     
Sbjct: 669 EDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILLEEAEELG 728

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   + +  I+ +G++LL LIN+ILD+S+IEAGR +L   A  +  ++   +   Q  
Sbjct: 729 YEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVSGLLESVMGTAQPL 787

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395
             + N  +      ++  ++AD   +RQ++LNLLSNA KFT   G++ + V         
Sbjct: 788 MSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TDGKIKIEVSRVSSLPYS 846

Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             SG      + D G G++  +   +   F QG  +      G GLGL I+       GG
Sbjct: 847 QESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGG 906

Query: 455 QFLIRSKLREGVEVIAILPNT 475
              ++S L EG     ++P  
Sbjct: 907 NIQVQSTLGEGSTFKVVIPTR 927


>gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 982

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 10/268 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +  VK           + E + A+      +++AE  N AKS FLA+MSHE+RTP+N ++
Sbjct: 430 RIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVI 489

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++    +     +  + Y   +  S   LL +I++ILD S+IEAGR E+      L
Sbjct: 490 GMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDL 545

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ +    L  +A EK +     + P +   +  D   ++QV++NL  NA+KFT   G
Sbjct: 546 RTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQ-G 604

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            + V VG  +  G       +++D G GI   +   +   F Q   +I     G GLGL 
Sbjct: 605 EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLA 664

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++   GG+  + S+   G E    
Sbjct: 665 ICKRLVQMMGGEIGVTSRPGVGSEFWFT 692


>gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 646

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 9/324 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              +L      +F  +V  +     + +  + +    +                ++    
Sbjct: 150 FALLLVGESIKTFLLMVGVIYIALSLIVKPISLLSRAVSDFKDGETPSRLRLPARAFDDE 209

Query: 215 LSCQAEKDDLIAELEVAK-SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +S  AEK +   E   +  +     +++AE  N+ KS FLA+MSHE+RTP+N I+G + +
Sbjct: 210 ISLLAEKYNSSVERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASL 269

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   +        K+Y+  I+ S + LL++IN+ILD S+IEAG+  +S     L D+V 
Sbjct: 270 LKEMELSS----EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVE 325

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   +  L+A  KN++   ++   +   +  D K ++QV+ NLL NAVKFT  G    V 
Sbjct: 326 QMCAIYTLKAHAKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVV 385

Query: 393 VGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 +        + D+G GIA+ +   V   F Q   +      G GLGL I + ++
Sbjct: 386 AKELDAQHIPHIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLV 445

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
           +  GG+  ++S++  G      +P
Sbjct: 446 SLMGGELELKSEVGLGSCFEFSVP 469


>gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 507

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/475 (22%), Positives = 173/475 (36%), Gaps = 43/475 (9%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----QNPIFPMWS 76
                 P      R  +     S  +    L  + L+   +  +FT           MW+
Sbjct: 13  RQPSVAPELRQEFRRTVAFSNSSRLKAVTWLLFWSLVGYLVADYFTIRQAATPRADAMWA 72

Query: 77  L-----ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
                                 + S+  +   + W     +    I     +  +     
Sbjct: 73  GIVGMRAVAMATCVAFLWLFGPLRSEDDLRSRHGWVWQAYIAFFLIYTAVIVAYMFPLKG 132

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                            L   A        AV      +   + +    +     +    
Sbjct: 133 SIGPVYIFM--------LGPPAFIAMTTRQAVLHQTLGMAAVIGSLYWFAPGAATVKYHI 184

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           + A  +S  ++I  H+                LI   E      +  RK AE  + AKS 
Sbjct: 185 INAAIISCISFIVAHV---TYASTLRDFLNKHLI---ETRNVELEVARKAAEAASQAKSD 238

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHE+RTP+NA+LG +E +    +    +   ++Y+     S  HLL+++N+ILD 
Sbjct: 239 FLAAVSHEIRTPMNAVLGMTEAVLHTPL----DARQRDYVETARESALHLLDVLNDILDF 294

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           SRIEAGR  L      L  +V   +  + L A +K + +  ++       +  D   +RQ
Sbjct: 295 SRIEAGRLRLVSEDFDLPAVVHSAMKTVGLEAGQKGVALDFEMMEGAPRFLRGDPGRLRQ 354

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEI 417
           V++NLL N VKFT   G V VTVG   G              G   S+ D+GPGI     
Sbjct: 355 VLINLLGNGVKFTEQ-GAVRVTVGPWDGGQGGESPPDPERPVGVRFSVSDSGPGIPPEFG 413

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F QG         G GLGL I + ++   GG+  +RS +  G E I  L
Sbjct: 414 QAIFEAFRQGDGTTSRRYGGSGLGLAICRDLVRLMGGEITVRSTVGRGSEFILGL 468


>gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32]
 gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
          Length = 1067

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 10/330 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVV--VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +SI  L    +          V   + L  + + S +         L       +     
Sbjct: 301 ISIVTLLAATVMGLTLSLAKQVTNNLGLVLRFLKSENDDTRPSLDKLIQGKDELSLFAQQ 360

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +  ++    + +      + E AK  ++E +  A + + AKS FLA+MSHE+RTPLN 
Sbjct: 361 VERLTIEREHAKEKLTIAKEDAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNG 420

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G SE++    + P    T ++Y+  I  S Q LL+LIN+ILD S+IE+G   +S  + 
Sbjct: 421 VIGISEILSDTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSA 476

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           S+ + + +   ++  +A+E+ I +   I P     V  D+  +RQ+++N +SNAVKFTA 
Sbjct: 477 SIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAE 536

Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG  + +     +        S++D G GI + +   +   F Q   +      G GLGL
Sbjct: 537 GGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGL 596

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I+  ++   GGQ  + S   +G      L
Sbjct: 597 AISTQLVELMGGQIQLDSVKGKGSCFYFDL 626


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 134/272 (49%), Gaps = 14/272 (5%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  +L         + D+  +     N AKS FLA+MSHE+RTP+NAILG +E++    +
Sbjct: 360 ELKELSQTFNRMAEMIDDHVQELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQL 419

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P       EY+     +G  LL LIN+ILDLS++E+GR EL  +  +L+++V +   ++
Sbjct: 420 TP----EQAEYVRICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELM 475

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +RA +K +E+   I P +   V  D   ++Q+++NL+ NAVKFT   G + + V     
Sbjct: 476 AVRAHKKGLELVCHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTER-GEIVLQVERDPD 534

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G GIA  +   +   F Q   +      G GLGL I++ ++    
Sbjct: 535 QPGEAGAIRFAVSDTGIGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMK 594

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           G+  + S+L +G          R     P + 
Sbjct: 595 GRIWVESELGKGSTFYFT---ARFGQADPIEE 623


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +     +         A     +    + +    + ++ AE  + AK  FLA+MSH
Sbjct: 122 WVQVLGQAKERGADGRWRQLAGIYRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSH 181

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N ILG ++++    + P      ++Y+  +  S + LL L+N+ILD SRIEAGR
Sbjct: 182 EIRTPMNGILGMTDLLLDSALAP----EQRDYLQTVKSSAEALLTLLNDILDFSRIEAGR 237

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
             L E   S+  +V E +  L LRA +K +E+F  + P + +V   D   +RQV+ NL+ 
Sbjct: 238 LSLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVG 297

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G + + V       ++    ++++D G GI   +   +  +F Q   +   
Sbjct: 298 NAIKFTER-GEIELDVTVVDTDDRHATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTR 356

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
              G GLGL I + ++   GG+  ++S L EG      L   RV + +P
Sbjct: 357 KYGGTGLGLAICKHLVELMGGELRVQSTLGEGSRFSFSLRLARVASPVP 405


>gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
 gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
          Length = 558

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 587

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + + +++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583


>gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 957

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 169/380 (44%), Gaps = 21/380 (5%)

Query: 119 LCWTLLTLV-EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L W ++ +   P         ++  + +  A+ +       L   +        VA +  
Sbjct: 157 LGWAVIEVSRAPTQVAKYRTILFAVSAVFTAIIVCTFLALRLSRDLTSPLS--QVAQALT 214

Query: 178 AIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            I    +           LA +     S    +     +    I     +  + +  +E+
Sbjct: 215 RIKEGKLDTRVYIEASPELALLQDGINSMAEALAKARSEMQQNIDQATEDLRETLETIEI 274

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                D  RK A E +  KS FLA+MSHE+RTPLN I+GF+ ++    +GP      ++ 
Sbjct: 275 QNIELDMARKEAIEASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLGP----QQRDQ 330

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +S + LL +IN+ILD S+IEAG+  L  + ++L +IV + + ML   A EKN+++
Sbjct: 331 LNTILKSSEILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDL 390

Query: 351 F-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISI 405
                    S +  D   ++Q++ NL++N +KFT   G V V V             I++
Sbjct: 391 AGLVYSDVPSHIMGDPLRIKQIVTNLVNNGIKFT-QSGEVVVRVMLEDESDESSLIKITV 449

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G G++  +  T+ ++F Q   +      G GLGL I++ +    GGQ  + S+L +G
Sbjct: 450 TDSGVGLSRVQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVESELGKG 509

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP   +    P++ 
Sbjct: 510 STFWIELPVE-IAPNQPDNE 528


>gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 982

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 10/268 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +  VK           + E + A+      +++AE  N AKS FLA+MSHE+RTP+N ++
Sbjct: 430 RIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVI 489

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++    +     +  + Y   +  S   LL +I++ILD S+IEAGR E+      L
Sbjct: 490 GMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDL 545

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ +    L  +A EK +     + P +   +  D   ++QV++NL  NA+KFT   G
Sbjct: 546 RTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQ-G 604

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            + V VG  +  G       +++D G GI   +   +   F Q   +I     G GLGL 
Sbjct: 605 EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLA 664

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++   GG+  + S+   G E    
Sbjct: 665 ICKRLVQMMGGEIGVTSRPGVGSEFWFT 692


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 12/273 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +         + RAEE +LAKS FLA MSHE+RTP+N I+G +E++    +G    
Sbjct: 523 ITEKKQVDMELRIAKVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELL----LGTRLT 578

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y   +  S + LL +IN+ILD S++EAG+ EL       + +V     +LQ +A+
Sbjct: 579 SEQLDYAQAVQESAELLLTVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAR 638

Query: 345 EKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK + I     D +      D   +RQV+LNL+SNAVKFT   G + + V   S  G   
Sbjct: 639 EKGLTISTFIADEARFLFQGDPGRLRQVLLNLVSNAVKFTER-GTIDIRVFPVSDTGSQV 697

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIA      +   F QG+ ++     G GLGL I+++++   GG+  ++
Sbjct: 698 TIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQ 757

Query: 460 SKLREGVEVIAILPNTRVLNF--IPEDNHESTQ 490
           SK  EG      LP  + L     P    ES Q
Sbjct: 758 SKPGEGSTFWFTLPVRKPLQTSQSPVHAAESRQ 790


>gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 545

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
 gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
          Length = 558

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 141/276 (51%), Gaps = 18/276 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+      ++ AE  N AKS+FLA+MSHE+RTP+N +LG  +++    +    +
Sbjct: 384 ITERKQAEEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL----D 439

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E         H S   LL +IN+ILD S+IEAGR++L  +  +L + VRE   M  ++AQ
Sbjct: 440 ENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQ 499

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           +KNI +  +ID S+  +V  D   +RQV++NL+ NAVKFT   G++ + V          
Sbjct: 500 DKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFT-ENGQIFLGVSLMETTAENT 558

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G GI     P +  +F Q   ++    +G GLGL I++ ++   GG   +R
Sbjct: 559 QLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVR 618

Query: 460 SKLREGVEVIAIL--------PNTRVLNFIPEDNHE 487
           S+   G      L        P     +   E+N E
Sbjct: 619 SEPGTGSLFWFTLCLRHAQSIPALLPADDAMEENSE 654


>gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 5/255 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E R  A+  N AKS FLA+MSHELRTPLNAI+G+SE++  E       
Sbjct: 538 ITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEA-EEHGL 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E I  I  + +HLL LINE+LD S+ E+GR  L+     L +++   + +++    
Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLP 656

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E+   +  + +  L ++  D   +RQ++ NLLSNA KFT   G + +         G   
Sbjct: 657 ERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRLMRDGGEWV 715

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I+D G GI+E +   +   F Q   +I     G GLGL I++      GG   + S 
Sbjct: 716 EIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVST 775

Query: 462 LREGVEVIAILPNTR 476
             +G      LP + 
Sbjct: 776 PGQGSTFTVSLPVSP 790


>gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1193

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 31/275 (11%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    + ++ AE  N AKS FLA+MSHE+RTP+NAILGF E+++    G +++
Sbjct: 674 ITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----GIIDD 729

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  I  SG+ LL LIN+ILDLS+I++G+ +++   I L  ++ E   +    AQ
Sbjct: 730 PRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQ 789

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +K + +   I   +  ++  DE  +RQ++ N+L NA+KFT   G V + V  T       
Sbjct: 790 KKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHE-GAVKIAVKATKKLPENR 848

Query: 399 ---RGQY-----------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
                 Y                 IS++D G GIA  +   +  +F Q          G 
Sbjct: 849 EKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGT 908

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL I + +    GG   ++S+L +G       P
Sbjct: 909 GLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943



 Score = 38.7 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 4/168 (2%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITL----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
            L   I  W   N     W ++      +            +    +   V +       
Sbjct: 15  FLFGTIAVWIILNSYGLFWGVLAGIISGSCTYLLWGHPYAWIVFTAETVFVALLLRRYPN 74

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
             +  G+ W  + +     +    + +   AT LI L  S    F    A  +  +  + 
Sbjct: 75  FVLLNGIYWLFIGMPLVAFFYYFGVHLPPLATGLIVLKQSVNGIFNAVIANLIITYFPLA 134

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           +L  +   +  +        L         +   +F+SN  I S + E
Sbjct: 135 SLIGRPKATRKLSFQQTLFNLLVTFVLIPSLILTVFQSNHLINSLENE 182


>gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase
           [uncultured marine group III euryarchaeote AD1000-40-D7]
          Length = 752

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 127/246 (51%), Gaps = 2/246 (0%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +   K       ++A+  N AKS FLA+MSHELRTPLNAI+G+SE++  E      + TY
Sbjct: 502 MRKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLD-TY 560

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  I+ SG+HLL LIN+ILDLS+IEAG+ +L        +++++     +   ++  
Sbjct: 561 SEDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLKQIEATAKPLVEKNK 620

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            +   K       +  D+  +RQ++ N+LSNA KFT   G V + +           + D
Sbjct: 621 NKFIIKCQTKKLKLKNDQTKLRQILFNMLSNAAKFTKE-GMVTLQINPEKKNHLKFEVLD 679

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+   ++  V   F Q   +      G GLGLPI++ +    GG+  + SK  +G  
Sbjct: 680 TGIGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEMMGGRMGVESKEGKGTT 739

Query: 468 VIAILP 473
              I+P
Sbjct: 740 FSIIIP 745


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1273

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 11/258 (4%)

Query: 224 LIAELEVAKSL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           LI   E  ++    + ++ AE  N AKS FLA+MSHE+RTPLN ++G  +++        
Sbjct: 583 LIDVTERNEAEVLRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCET----D 638

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++    Y+     S + LL LIN+ILD S+IEAG+ ELS S  +L  +V +   M   R
Sbjct: 639 TDQQQGRYVSIAKNSAESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHR 698

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397
           A  K +E+   I P ++  V  D + +RQ+++NL+ NA+KFT + G + + V        
Sbjct: 699 AASKGLELSCHILPEVASRVLGDSERLRQILINLIGNAIKFTEV-GEIRINVAATSTRDH 757

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     ++D G GI E     +   F Q   +      G GLGL I + +    GG+  
Sbjct: 758 EQWVRFEVQDTGVGIPEDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKIT 817

Query: 458 IRSKLREGVEVIAILPNT 475
           + S+L  G      +P  
Sbjct: 818 VDSQLGSGATFSLEIPFE 835


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 12/348 (3%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               L  +  A +L+ + +  +  F +   +        + +     +S     I     
Sbjct: 42  ALALLLSHDFALVLLDVQMPGMDGFEIAELMRGIEKTKSIPIIFVTAISKEQKHIFKGYE 101

Query: 193 LATALSFFTYITYHLFKSNVKI-LSCQAEKDDL---IAELEVAKSLSDETRKRAEEENLA 248
                  F  +   + +S VK+ L    +K  L     ELE         +K AE  N+A
Sbjct: 102 AGAVDYLFKPLEPEILRSKVKVFLELHKQKILLQKQAEELEQKMMQLSLAQKAAEAANIA 161

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+NAI+G ++++   ++        +EY+G    +GQ+LLNLIN+I
Sbjct: 162 KSAFLANMSHEIRTPMNAIIGMADLLWETSLTK----EQREYVGIFRTAGQNLLNLINDI 217

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDLS++EAG  +L +   ++  +V + +  + ++A  K + +  +I P +   V  D+  
Sbjct: 218 LDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIKPDVPGFVVGDQNR 277

Query: 368 MRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSF 424
           ++Q+++NLL NA+KFT  G  + +   +           S+ D G GI + +   +  SF
Sbjct: 278 LQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKFSVSDTGIGIEKEKSEIIFESF 337

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +  S   G GLGL I + ++   GG   + S++ +G      +
Sbjct: 338 TQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEIEQGSTFFFSI 385


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/368 (25%), Positives = 157/368 (42%), Gaps = 19/368 (5%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLD 186
                   +L        ++ L ++A+   ML   VF     +             + + 
Sbjct: 142 YFNDEFISHLLYNLVVEAILILGLAAIILVMLEQLVFRHLRHIAAQTEKLSIDTIGNPIT 201

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244
           +      + +      +   L      IL    ++  +   L  AK    ETR+  E   
Sbjct: 202 LERQPSDSESEDELDSVVNALNSMRETILIDIKQQAQIEDALLAAKEEKIETRRMIERVK 261

Query: 245 -ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKS+F+A+MSHE+RTP+N ++G  E++    +    N++ K Y+  I RSG+ LL 
Sbjct: 262 AANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPL----NDSQKHYLDVIFRSGESLLE 317

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN+ILD S+IEAG+  L      L +++ +C+ +      +++IE    I P   + + 
Sbjct: 318 IINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPTQLR 377

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEI 417
            D   +RQ+++NL+ NA KFT   G V V V     R         SI D+G GI++   
Sbjct: 378 GDPTRLRQIVVNLIGNAFKFT-SNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGISKEIQ 436

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LP 473
             +  +F Q   +      G GLGL I + +    GG   + S+  +G          LP
Sbjct: 437 RNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTIRFDLP 496

Query: 474 NTRVLNFI 481
             R     
Sbjct: 497 EDRQRQPP 504


>gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 813

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/450 (22%), Positives = 192/450 (42%), Gaps = 20/450 (4%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90
           + + +    R   +  L++                 +W   T         +    L+  
Sbjct: 205 LLIFISIRDRSYLLYVLYLGTFTLNIFTREGLSYQWLWPQATQWNHYSIPILNLLTLAFS 264

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
                  +++ +        LV   ++ + +  LTL++   +      I     LL+A++
Sbjct: 265 ILFTCQFLELKKRAPTINRGLVATASVLILFAPLTLIDFHFFIQASTAI-ILPWLLVAIA 323

Query: 151 ISALS---NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +S       +       L+F  V +A     + +  +++          +  F       
Sbjct: 324 LSIWLIRQGYSPARYFLLAFTAVALATMAYILKTFQLINGGWLLENIMPMGTFIEALLLS 383

Query: 208 FKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           F    ++   ++E   +  E  E+ +    E          A+S FLA MSHE+RTPLN 
Sbjct: 384 FALAHRMTILKSENARIQNEANEILEQRVSERTSELNAALNARSEFLAVMSHEIRTPLNG 443

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G  ++++    G   N+  +  +  I +SG  LLNLIN+ILD SRIEAG+  + +++ 
Sbjct: 444 IIGTVDMLK----GSPLNDEQRHNLNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSF 499

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L +++ E + + Q +AQ  +  +   + P++      D   +RQ+++NL+SNAVKFT  
Sbjct: 500 NLFNLLNESLTLFQHKAQIHSNALTLDVAPNVSERCLGDPVRLRQILVNLISNAVKFT-D 558

Query: 386 GGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            G + V            Y  ++D+G GI+E +   +   F QG  +      G GLGL 
Sbjct: 559 NGTITVRAQRDPANSDYLYFEVQDSGTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLA 618

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I + ++   GG+  + SK ++G      LP
Sbjct: 619 ICRQLVEIMGGEIGVDSKPKQGSRFWFRLP 648


>gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 1013

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 6/316 (1%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P   A   + + S   + + +     ++  ++  +           L         +   
Sbjct: 413 PSTAAYIGERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHR 472

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +  ++     ++ AE  N AKS FLA+MSHE+RTPLN +LGF++++        + +   
Sbjct: 473 KKHEAELRRAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLLRGA--ANDPQKRD 530

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  SG++LL++IN++LDLS+IEAG+ E          +V E + +L+++A EK +
Sbjct: 531 EYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKAL 590

Query: 349 EIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIK 406
            +           +  D   +RQ++ NL+ NA+KFT   G V +  GW +  +     I+
Sbjct: 591 RLTCDWSGEVPPQIVTDSVRLRQLLTNLIGNAIKFT-QFGSVSIDAGWHAPLQQLTFVIR 649

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E ++  +   F Q          G GLGL I + I    GG   + S++  G 
Sbjct: 650 DTGIGIPEEKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGS 709

Query: 467 EVIAILPNTRVLNFIP 482
                +    + +  P
Sbjct: 710 TFTVTI-AAPLYDAPP 724


>gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
 gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
          Length = 558

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1193

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 31/275 (11%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    + ++ AE  N AKS FLA+MSHE+RTP+NAILGF E+++    G +++
Sbjct: 674 ITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----GIIDD 729

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  I  SG+ LL LIN+ILDLS+I++G+ +++   I L  ++ E   +    AQ
Sbjct: 730 PRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQ 789

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +K + +   I   +  ++  DE  +RQ++ N+L NA+KFT   G V + V  T       
Sbjct: 790 KKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHE-GAVKIAVKATKKLPENR 848

Query: 399 ---RGQY-----------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
                 Y                 IS++D G GIA  +   +  +F Q          G 
Sbjct: 849 EKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGT 908

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL I + +    GG   ++S+L +G       P
Sbjct: 909 GLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943



 Score = 38.7 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 4/168 (2%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITL----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
            L   I  W   N     W ++      +            +    +   V +       
Sbjct: 15  FLFGTIAVWIILNSYGLFWGVLAGIISGSCTYLLWGHPYAWIVFTAETVFVALLLRRYPN 74

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
             +  G+ W  + +     +    + +   AT LI L  S    F    A  +  +  + 
Sbjct: 75  FVLLNGIYWLFIGMPLVAFFYYFGVHLPPLATGLIVLKQSVNGIFNAVIANLIITYFPLA 134

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           +L  +   +  +        L         +   +F+SN  I S + E
Sbjct: 135 SLIGRPKATRKLSFQQTLFNLLVTFVLIPSLILTVFQSNHLINSLENE 182


>gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
 gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
          Length = 1116

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 17/344 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK- 213
               +       F            +     ++ L          + +I+  +   +   
Sbjct: 504 MALTVHPEHADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDGRYHWISTQIINVDNPY 563

Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                 +      D+   E E  +         A   N AK +FL++MSH++RTP+NAI+
Sbjct: 564 SNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAII 623

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G S +         + E   E +G I+ SG+HLL+LIN+ILD+S+IE+G+  L +   +L
Sbjct: 624 GMSAIASAHL---DDRERIMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNL 680

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            +++ + + +++ +A  + I +  +       +V  D   +RQV +N+LSNAVK+T  GG
Sbjct: 681 AELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCINILSNAVKYTPEGG 740

Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           ++ + V          +       D G G+    +  +   F + S +  S   G GLG+
Sbjct: 741 KIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGM 800

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            I ++I+    G   + S   +G      LP    L  + +D  
Sbjct: 801 AITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK--LQDVSQDET 842


>gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 605

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/472 (22%), Positives = 177/472 (37%), Gaps = 29/472 (6%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83
           G    +          L  + L        L +   A             +W + T+A  
Sbjct: 13  GARSGAGEAAQALTAILQTQYLRY------LIIASWAVGLWGTVGTLQAVLWFVATVAAG 66

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL-TIYKS 142
           +   +  +++            W +            W    L+   + +          
Sbjct: 67  SVRGAFERRMSGRVD-----AGWGLIFPAVATVTTAAWASAPLLAWFSPSSFGQSLAVAL 121

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
                 L  S L +      V  S + VV  +   ++         L+ M  TA   F  
Sbjct: 122 LISGYVLVFSQLRSSPKQAIVISSPYSVVALIILGSLWGGPEFMPFLSIMPFTAAGLFVL 181

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +T  + +   + +    E    + E           R +A+  N AKS FL  +SHELRT
Sbjct: 182 VTMTMLR--EERIKAFQEHQAHLIE------ELQGARDKADAANQAKSNFLGVISHELRT 233

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N +LG ++++    +      T +EY+  I  SG +LL+L+N+ILD+++IEAG+    
Sbjct: 234 PMNGVLGAAQLLGSTRL----ESTQREYLSIIRNSGDNLLHLLNDILDMTKIEAGKMTFE 289

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
              I L D+ R        +A+ K ++     +      V  D   + QVI NLLSNAVK
Sbjct: 290 VIDIGLEDLHRRVTGPFAAQAEAKGLQFVSTFEGETPSVVRGDPLRVCQVIQNLLSNAVK 349

Query: 382 FTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  G     V     S +      S+ D+G GIA  ++  +   F Q   +      G 
Sbjct: 350 FTDTGTIHYVVRSRRISDKRVAFDFSVTDSGAGIAPADLERLFQPFTQVDASSTRRFGGT 409

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           GLGL IA+ +    GG   + S + +G      +    V+ + P    E+  
Sbjct: 410 GLGLTIARRMANIMGGDIQVESIVGQGSTFTLSV-EAEVVEWQPMQEAEAID 460


>gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
 gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
          Length = 571

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ +G     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLPKS 567


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 8/288 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +         +      +        + E ++ +    + ++ AE  + AK  FLA+MSH
Sbjct: 125 WLEVCGNASGRGEDGRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSH 184

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N I+G ++++   T+        +EY+  +  S + LL +IN+ILD SRIEAGR
Sbjct: 185 EIRTPMNGIIGMTDLLLDSTIAG----EQREYLQTVKSSAEALLTIINDILDFSRIEAGR 240

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377
             + +   SL  +V E    L LRA +K +E++  + P + SV   D   +RQ+++NL+ 
Sbjct: 241 LSVEQIDFSLHSVVSETCRALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIG 300

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G   V V     +G    I   ++D G GIA  ++  +  +F Q   +    
Sbjct: 301 NAIKFTEHGEVEVRVRCVQRNGGAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRK 360

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             G GLGL I + +    GG+  + S    G      LP   V +  P
Sbjct: 361 YGGTGLGLAICRQLTELMGGRIGVDSVPGAGSRFEVTLPLRAVADPTP 408


>gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
 gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
          Length = 558

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 558

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 1269

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 3/271 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L ++  ++ S Q E  +  A LE A+       ++ E  N  KS FLA+ SHE+RTPLN
Sbjct: 550 RLEQNQEELQSQQDELKNQNATLEKARLELARRTEQLELANKYKSEFLANTSHEIRTPLN 609

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+G +E +     GPL NE     +  I+ S   L  L+N+ILD SR+E     +    
Sbjct: 610 GIIGLTESLIDGAAGPL-NEKTMSNLELINSSAIRLSTLVNDILDFSRMENHELGIQRKP 668

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
                IV   + + +    +K++ +   I   +  +  DE  ++Q++ NL+ N +KFT  
Sbjct: 669 TDFYAIVDVVVRVSRELIGDKDLVLVNTIGKDIPIIEGDENRLQQILYNLIGNGIKFT-E 727

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V ++   T      +S+KD G GI+      +  SF Q   +      G GLGL I+
Sbjct: 728 SGQVTLSAKTT-DAFLSVSVKDTGIGISPESQDRIFESFEQEDGSTSRNYGGTGLGLAIS 786

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           + ++  HGG   ++S++ +G E I  LP ++
Sbjct: 787 KELVELHGGTIQLKSEVGKGSEFIFTLPISQ 817


>gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 420

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/263 (41%), Positives = 152/263 (57%), Gaps = 8/263 (3%)

Query: 220 EKDDLIAELEVAKSLS-------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           E   ++AELE +++         +    RAE  N AKS FLA+MSHELRTPLNAI GFSE
Sbjct: 138 ELRAMVAELEASQANLALLARKYEVAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSE 197

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  E  GPL +  YK Y  DIH SGQHLL+LIN+ILD+++IEAG+  L    ++L  + 
Sbjct: 198 IMAAEMFGPLGDRRYKGYAADIHGSGQHLLSLINDILDMAKIEAGKLTLHYEPMALDVLC 257

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E + +++ +AQE  + +       L  + AD++G++QV+LNL+SNAVKFT  GG V V 
Sbjct: 258 AEAVRLMRGKAQEAQLALTLDCPEDL-HIEADQRGLKQVLLNLISNAVKFTPEGGAVSVK 316

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V         +S+ D G GIA  ++  +   F Q       + QG GLGL + +S++  H
Sbjct: 317 VAPRDAATVRVSVVDTGIGIAAKDLERLAQPFEQVEGQHSKSTQGTGLGLALTKSLIELH 376

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
           GG   I S+   G  V   LP  
Sbjct: 377 GGAMTIESEPGRGTTVWFDLPTR 399


>gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 5/255 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E R  A+  N AKS FLA+MSHELRTPLNAI+G+SE++  E       
Sbjct: 538 ITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEA-EEHGL 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E I  I  + +HLL LINE+LD S+ E+GR  L+     L +++   + +++    
Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDIIRPLLP 656

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E+   +  + +  L ++  D   +RQ++ NLLSNA KFT   G + +         G   
Sbjct: 657 ERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRLMRDGGEWV 715

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I+D G GI+E +   +   F Q   +I     G GLGL I++      GG   + S 
Sbjct: 716 EIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVST 775

Query: 462 LREGVEVIAILPNTR 476
             +G      LP + 
Sbjct: 776 PGQGSTFTVSLPVSP 790


>gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 558

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
 gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
          Length = 558

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
 gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
          Length = 558

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 554


>gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 1078

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 10/265 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + ++  A     I   + A    ++ R++AEE N AKS FLASMSHE+RTPLNAI G S+
Sbjct: 534 ERITHVAVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSD 593

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++ L  + P      +E +  I  S   LL LIN+ILDLSRIEAGR EL    +   D+V
Sbjct: 594 LLLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLV 649

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           R    M + +A+ K +     +   L   V  D   +RQ+++NLLSNA+KFT  GG V +
Sbjct: 650 RHTWEMFRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGG-VTL 708

Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V     +       + ++D G GI   ++  +   F Q   +I     G GLGL I++ 
Sbjct: 709 SVTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQ 768

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +    GG  ++ S++  G   +  L
Sbjct: 769 LAEMMGGTVVVSSEVGRGSTFVCRL 793



 Score = 37.9 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 12/136 (8%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
                   L    +F V   L   VL+ A     +      P W            SL  
Sbjct: 78  AAGFRGRVLFWVRIFPVGVFLLGGVLMRAVPSWVWDPETFSPRWFSYASGGLMILYSLAV 137

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LS 150
                +        +   L            +  L  P    PE   ++    L    + 
Sbjct: 138 IFFRYERYEWFFRAYSPLL-----------AVAPLGFPFIMLPEVFILWYLLGLSFGCMV 186

Query: 151 ISALSNFMLPYAVFLS 166
           + +L        V  +
Sbjct: 187 LLSLLAHDARVDVLPA 202


>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 581

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 8/279 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I  +  +  +     +    +L +E+    +   +   R EE +  KS FLA+MSHELR
Sbjct: 150 LIEDNYRQYRINQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELR 209

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI GF+E++    +    N+   EY   I ++   LLNLIN+ILDL++IEAG+ +L
Sbjct: 210 TPMNAITGFAELLAETPL----NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDL 265

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
                SL +++     M  L A++K IEI  K    L  ++  D   +RQV++NLL NA+
Sbjct: 266 EAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAI 325

Query: 381 KFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  GG  + V  G T+      + +++D+G GI+   +  +   F Q   +      G
Sbjct: 326 KFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGG 385

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL I + ++   GGQ  + S+  +G      +   R
Sbjct: 386 TGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIELER 424


>gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 11/258 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL++ ++   E R+RA   + AKS FLA+MSHE+RTP+N +LG +E++    + P   
Sbjct: 680 ITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDP--- 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +   I +SG  LL +IN+ILD S+I+AG+  L  +  +L + + +   ++  RA+
Sbjct: 737 -KQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 795

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
           EK++E+  +I+P L S+   D   +RQ++ NLL NAVKFT   G V V V      +G  
Sbjct: 796 EKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDE-GHVLVDVTGERMPTGTK 854

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS+ D G GI E ++  V   F Q   +     +G GLGL I   ++   GG+  + S
Sbjct: 855 LTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVES 914

Query: 461 KLREGVEVI--AILPNTR 476
              +G        LP+  
Sbjct: 915 AEGKGSTFWFEVTLPSAE 932


>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1129

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 14/284 (4%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              FF    + L ++N  ++    +   LI           + ++ AE  N AKS FLA+
Sbjct: 441 YRFFFNQAAFRLNENNSGVVGVMEDVTALI----QNAVELRKAKEEAERANRAKSAFLAN 496

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NA+LG +E+    T     +E  +EY+  IH +   L+++IN+ILD+S+IE
Sbjct: 497 MSHEIRTPMNAVLGMTELALETTY----DEDQREYLETIHEASCSLMDIINDILDISKIE 552

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           +G  E+      L ++  +    L   A  K +E+   ID  L+     D   +RQ+++N
Sbjct: 553 SGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVN 612

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           LLSNAVKFT   G + ++V             I I+D G G++E EI  + + F Q  ++
Sbjct: 613 LLSNAVKFTDE-GEILMSVKAMEKTAKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVS 671

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                 G GLGL I + ++   GG+  ++S   +G      +P 
Sbjct: 672 TTKRYGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIPL 715


>gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 778

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 157/295 (53%), Gaps = 2/295 (0%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           D  LAG       +  +    L + + +I        D I +    +    E ++ AE  
Sbjct: 485 DFRLAGRAGAEERWLRHRATALRRPDGQIYRLSGAVGD-ITDSRRGEDRLREAKEAAEFA 543

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FL +MSHELRTPLNAI+GFSEV+  E  GPL    Y +Y   I  SG+HLL++I
Sbjct: 544 NRAKSEFLTNMSHELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVI 603

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD+SRIEAGR  L    +   +IV     ++  RA+   + +   +DP+L  +  + 
Sbjct: 604 NDILDVSRIEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEA 663

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
           + ++QV++NLL NA+KFT  GG + ++      +GQ  I + D+G G+A  +IP  L  F
Sbjct: 664 RRLKQVLINLLGNAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPF 723

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            Q    +    +G GLGLP++++ +  HGG   + S    G  +   LP   V +
Sbjct: 724 RQIDGQLARRYEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLPAGAVES 778


>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 413

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 10/343 (2%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           Y +   LI   + +L+  +    V +    V +A+   + ++  +  +       +    
Sbjct: 80  YNAVMALITSQVESLARELSISTVIMIALVVGIAVWMASFLTRRITAVVGGIHRFSEQET 139

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +          +     +  D I E   +    DE RKRAEE +  KS FLA+MSHE
Sbjct: 140 EYRLPVQGHDEMASLAISFNQMADRIGE---SFVRLDEARKRAEEASRMKSEFLANMSHE 196

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN I+GFSE+I  E      ++  +E    I +S +HLL L+N ILD+++IEAG  
Sbjct: 197 LRTPLNGIIGFSELIRDEA----ADDETRENADIIEKSSRHLLELVNSILDIAKIEAGAM 252

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L+   + L  +V E   +    AQ K I +  ++  +    + AD   +RQ+I NLLSN
Sbjct: 253 TLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQVSDNCPETIRADPLRLRQIIHNLLSN 312

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT   G V ++V           + D G GI EG +  +   F Q    +  +  G 
Sbjct: 313 AVKFTEK-GEVSLSVELEP-GHLIFRVSDTGAGIPEGMLHAIFEKFRQVDSFLTRSHSGT 370

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GLGL +A+ ++   GG   ++S + +G      LP  +  +  
Sbjct: 371 GLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLPLHQPESSS 413


>gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1352

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 13/349 (3%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             L  + +    +   +      + V  +  +       +                    L
Sbjct: 755  GLHFAEMQASFILVPLATESQVLGVLSAASSHKRFFPPEQLDFFRSLANQVSLAIHNARL 814

Query: 208  FKSNVK-ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            ++  ++     + +  +   EL+       E  +  +E +  K+ FLA++SHELRTPLN+
Sbjct: 815  YEKLIRFSKELETKVAERTLELKNKSLELGEANRALKELDRLKTEFLANVSHELRTPLNS 874

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            ILG+++++     G +N +  K  +  + ++   LL LIN++LDLS++ AGR EL+    
Sbjct: 875  ILGYTQLLLDGVDGAINEDQQKSLL-RVEKASNRLLQLINDVLDLSKLRAGRLELNAQKE 933

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
             L +I+ E + +++  A+ K I +  + +  +  V  D   + QV+LNLLSNAVKFT   
Sbjct: 934  DLHEILSEALQVVEPLARAKEISLKVE-ESEVPPVIVDRDKIIQVLLNLLSNAVKFTDSH 992

Query: 387  GRVHVTVGWTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            G + + +   S             + I D G GI E ++  +   F Q   +      G 
Sbjct: 993  GLITINLNTVSLPESHGLIKDYAAVRISDTGIGIKEDDLQNIFQEFVQIDSSATRRHGGT 1052

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDN 485
            GLGLPI++ ++  HGG+  + S+  +G     ILP    +    IP + 
Sbjct: 1053 GLGLPISRHLVEMHGGRIWVESEYGKGSTFTFILPLPTPKSEAAIPSEE 1101


>gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 975

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 138/251 (54%), Gaps = 6/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   ++ + +AEE   AK  F+A+MSHE+RTP+N+I+GFS+++    +    +
Sbjct: 380 ITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPL----D 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++++  ++ + + LL L+NEILD +++E G+  +     SL  ++   I    L A+
Sbjct: 436 QEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLEAK 495

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K++E+   I  S+S + + D   +RQV+ NL+ NA+KFT   G V VTVG T  +  + 
Sbjct: 496 KKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEE-GSVTVTVGMTQNQHLFF 554

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GIA+  I  V   F Q          G GLG  I++ ++   GG   + S+L 
Sbjct: 555 EVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSELG 614

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 615 KGTCFYFSLPL 625


>gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 703

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/396 (27%), Positives = 173/396 (43%), Gaps = 12/396 (3%)

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           A++AA   +G+    S +  G +               +CWT   +       P ++   
Sbjct: 173 ALHAACALMGRYFGVSRVGYGLLDPVEDIFS-----YTVCWTDGFVPPLLGDYPAHVFGE 227

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
           K    L A     + +         +      A      +   V+     G L T +   
Sbjct: 228 KIVAALSAGQTIVVDDLFAASISDEARTLETAADVDTRAIL--VVPFLRGGRLRTIVYLN 285

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                H   + +  +   AE+   + +         + R++AEE +LAK+ FLA+MSHE+
Sbjct: 286 AQQPRHWDPAEIAFMEAVAERTRQLIDRAENIRELTQARRKAEEASLAKTEFLANMSHEI 345

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G   ++    M        +E++  ++ S + LL LIN++LD+++IEA   E
Sbjct: 346 RTPMNAIIGIGTLLA---MSQPLTARQQEFVKTLNVSAKGLLELINDLLDVAKIEAHTVE 402

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L E   SL  I+ E   M+ +R++EK +     ID         D   +RQ++LNL SNA
Sbjct: 403 LEEVPFSLEQILLEVASMMTVRSREKGLTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNA 462

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT  GG V + V   +     IS++D G GIA   + T+   F Q   +I     G G
Sbjct: 463 VKFTQTGG-VEIRVACGAEDSVAISVRDTGIGIAPENLSTIFDKFVQADNSISRKYGGTG 521

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL I +++    GG   I S+   G      LP  
Sbjct: 522 LGLAITRNLAELMGGAIAIDSQPGHGSTFTVTLPLR 557


>gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
 gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
          Length = 545

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQVNALKGV- 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 541


>gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 598

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 2/236 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE+    +  F++ +SHELRTPL AI G++E +   T+   + E  ++Y   I    Q 
Sbjct: 364 EAEKLEQMRKDFVSDVSHELRTPLTAIRGYNEALSDGTV--EDPEIRQKYHNIIREETQR 421

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI+++LDLSR+++G+  L    + +  ++R  +  L+ +   K I +   I  ++  
Sbjct: 422 LERLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDIPQNIPY 481

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  +E  + Q+++ LL NAV++T  GG++ V+VG    +G  I+I D G GI + +IP +
Sbjct: 482 IMGNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFI 541

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +   +      G GLGL IA+ I+  H G   + S+L  G     + P   
Sbjct: 542 WERFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFPLAE 597


>gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
 gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
          Length = 558

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  FLA++SHEL+TP+ +I GFSE +    M   N +  + ++  I +  + 
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 381

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI ++LDLS+IE   ++L+   + + +++ E  ++L+ ++Q+K I +   +     S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQVDVL-RHVS 440

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP +
Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 499

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   + S++ EG      LP +
Sbjct: 500 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 554


>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 619

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 23/338 (6%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +    ++  +    + + +L   + L   P+              L  ++A    +    
Sbjct: 118 FLFLLVMTLIQTLLIVSCLLWLTMKLILKPIS------------HLSSAMADFHTSPTPD 165

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   LF   +  L+ +  +     +L V      E++K+AE  N+ KS FLA+MSHE
Sbjct: 166 KLVMPKRLFHDEISHLTDKYNQCA--EQLRVNYQQIIESKKKAEIANVKKSEFLANMSHE 223

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N I+G +E+++        NE  + Y+  +  S   LL++IN+ILD S+IEAG +
Sbjct: 224 IRTPMNGIVGVAELLKETK----PNEVQRNYVDILLTSSHTLLDIINDILDFSKIEAGHF 279

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           EL  +   L  ++++      +RA+++ +     IDP++   + AD   ++QVI NL+ N
Sbjct: 280 ELDPTKFDLKSLIQQQANEYSIRAKQQELFFDCNIDPAVPQEIEADSVRLKQVINNLIGN 339

Query: 379 AVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A+KFT   G V + +       G      +KD G GIA+ ++ ++   F Q   +     
Sbjct: 340 ALKFTHR-GYVELNIKLLENETGNQLQFEVKDTGIGIAKDKLDSIFDKFQQADGSTARQY 398

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            G GLGL I+Q I+   GG+  + S++  G      +P
Sbjct: 399 GGTGLGLAISQKIVELMGGKLQVTSEVDLGSSFYFSIP 436


>gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 534

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 188/475 (39%), Gaps = 50/475 (10%)

Query: 45  LFRVSPILPLFVLLVANIGTW-----FTQNPIFPMWSLITL--AVYAANLSLGKKVMNSD 97
           +  +  ++    + VA    +     + +  +   + ++ L    +  +       +  +
Sbjct: 58  VLMLFSVVVSCTVFVAAWYDFKQTRSWRELVLCLTFFMVGLIDVAHTLSYRGMPNFLTEN 117

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157
                   W    ++ ++   L      ++ P   +      + +   +  L I     +
Sbjct: 118 SLNKSTLYW----VLSRLVESLGLLTAVVINPIRKSKLNPGYFLAGAAVFTLVIITSIGY 173

Query: 158 ---------------MLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLATALS 198
                                      V+  ++   ++ +           A ++    S
Sbjct: 174 YHPKYPPMFIPGEGQTWLKVFLDYLVIVLKGIALYHLIRLGRKYSADYYLQAALIFGIFS 233

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEV------------------AKSLSDETRK 240
              +  Y        +L    +  +    +                     K    E   
Sbjct: 234 EAAFTLYASAYDTYNVLGHVYKIFEFAYIMRALFILSVVRLYQTNTVLHNQKRQMAEINL 293

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           + E+ N  K+ FLA+ SHELRTPL AI+ F+E++  E  GPLNN   ++YI +I+ S Q 
Sbjct: 294 QLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNN-MQRDYINEINESSQQ 352

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LLN IN +LDL++IEAG++E+   A+S+ D+    +   +   + K  ++   ++ ++  
Sbjct: 353 LLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVIIDVEDNIPP 412

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPT 419
           V+ D   M QV++NLLSNA KFT   GR+ +            +S+ DNG GI+   +  
Sbjct: 413 VYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNGVGISSENLEL 472

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F Q +   +   QG GLGL + + I+  HGGQ  + S L +G      +P 
Sbjct: 473 IFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFYFSIPL 527


>gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
 gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
          Length = 324

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E     S + R +AEE N AKS F+A+M+HELRTPLNAI+G+SE+++ E       +   
Sbjct: 64  ETKNEESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVP 123

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  I  +G+HLL LIN++LD S++EAG+  L      +  ++++ I  ++   ++ N 
Sbjct: 124 D-LEKIASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNN 182

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405
            +      +L  + +D   +RQ + NLLSNA KFT   G + +              + +
Sbjct: 183 HLIVNYPKNLGIMQSDVTKVRQCLFNLLSNANKFTET-GTITLQANRYSQKGEDWISLKV 241

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+   +I  V  +F Q   +      G GLGL I +      GG+  + S+  +G
Sbjct: 242 SDTGIGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKG 301

Query: 466 VEVIAILPN 474
                 LP 
Sbjct: 302 STFSINLPA 310


>gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
 gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Puerto Rico]
 gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
          Length = 468

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              L   +  A+     +    ++ + ++LS Q +          A     E ++ AE E
Sbjct: 180 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 229

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI
Sbjct: 230 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 289

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD S+ EA +  +      L  IV     M+  RA++  +E+ +++      + AD 
Sbjct: 290 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 349

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K M+QVI+N+LSN+VKFT  GG V +      G    + I D G GIA+ ++  V++ FG
Sbjct: 350 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 408

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           Q         +G GLGLP+++ ++    G F I+S+   G  V    P+ +
Sbjct: 409 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 459


>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 539

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 8/279 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I  +  +  +     +    +L +E+    +   +   R EE +  KS FLA+MSHELR
Sbjct: 150 LIEDNYRQYRINQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELR 209

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI GF+E++    +    N+   EY   I ++   LLNLIN+ILDL++IEAG+ +L
Sbjct: 210 TPMNAITGFAELLAETPL----NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDL 265

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
                SL +++     M  L A++K IEI  K    L  ++  D   +RQV++NLL NA+
Sbjct: 266 ETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAI 325

Query: 381 KFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  GG  + V  G T+      + +++D+G GI+   +  +   F Q   +      G
Sbjct: 326 KFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGG 385

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL I + ++   GGQ  + S+  +G      +   R
Sbjct: 386 TGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIELER 424


>gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 900

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/463 (20%), Positives = 177/463 (38%), Gaps = 27/463 (5%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
           R               I   FV + + +             + + +++    +   +   
Sbjct: 191 RRRERGFFFYAVSNLGIALYFVRMASPLAFLPPVLSYSVSKAGLIVSLGYLFVFYFEFF- 249

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
            S      +  + + L+              ++ P T          S  L  A  +S +
Sbjct: 250 -SLRGSDRLKRYVLTLVW-------VVGGFMVLVPQTLQDAERVFASSLVLGFAFLVSYV 301

Query: 155 SNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
              ++ +        F  +   L         V  +              +I   +    
Sbjct: 302 VISIIIFRHGAREGGFLLIGTGLLVLLGGHDIVYKVMGREPFVWLQGIGIFIFEAMIFIT 361

Query: 212 VKIL------SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +           +     +  E+        E  +  E+ N AKS FLA++SHE+RTPL+
Sbjct: 362 LASRTMRVYARLEEYSTGIEEEVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLH 421

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GF+E ++    G  +    + ++  +    Q L  LI+EILD+ ++E G+  L ES 
Sbjct: 422 AIMGFAEALK----GEQDPREREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESP 477

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V     +++  A+ K +    +I+  +   V  D   ++QVI+NL+ NAVKFT 
Sbjct: 478 FNLHEVVGYVCRVMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTE 537

Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            GG V V VG           + ++D G GI E     V  SF Q   +      G GLG
Sbjct: 538 EGG-VRVRVGCVEEGEGRWIEVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLG 596

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           + IA+ ++   GG   + S++ +G  V   +P    +  +  +
Sbjct: 597 MTIARELVRLMGGDVWLESEVGKGTRVWFRIPCVEAMAGVEAE 639


>gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
 gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
          Length = 558

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
          Length = 925

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 22/387 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  L L   GT    Y +++ S  L+   +   ++  +          P+ +     A
Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLI--AAGLGVTALLALRMSRAINAPLELISQGVA 205

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EV 230
            +    ++  L  M +  L         + ++            D   E         E+
Sbjct: 206 QLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIEI 265

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P      ++Y
Sbjct: 266 QNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDY 321

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +S + LL +INEILD S+IEAG+  L     +L D++++ + ML   A EK +E+
Sbjct: 322 LSTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLEL 381

Query: 351 F-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                  +   +  D + ++Q++ NL+ NA+KFT  GG V V               IS+
Sbjct: 382 VSLVYRDTPVQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISV 440

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++E +   +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 441 QDTGIGLSEDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 500

Query: 466 VEVIA--ILPNTRVLNFIPEDNHESTQ 490
            E      LP +R  +     +  + Q
Sbjct: 501 AEFWISLSLPKSREDSETAGASWAAGQ 527


>gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 134/269 (49%), Gaps = 10/269 (3%)

Query: 210  SNVKILSCQAEKDDLI-AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            S  + L+ Q+E   L+  EL   K      R  AE+ N AKS FLA+MSHE+RTP+N ++
Sbjct: 884  SQAEELNSQSENLHLLNEELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVI 943

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G + ++    +    N   +EY   I   G  L+N+IN+ILD S+IE+G+ ++      L
Sbjct: 944  GMASLLVETDL----NTEQREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDL 999

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
               + E + +   R   + I++  +ID ++   +  D   ++QV++NL++NA+KFT  G 
Sbjct: 1000 RHSIEEVMDLFGPRVALRGIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGE 1059

Query: 388  R-VHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              V +++      G      ++ D G GI E ++  +   F Q   +      G GLGL 
Sbjct: 1060 VFVKISLLKQDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLV 1119

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I++ ++   G +    S   +G      +
Sbjct: 1120 ISERLVKLMGDEIWAESNFGKGSVFSFSI 1148


>gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
 gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
          Length = 836

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/267 (38%), Positives = 158/267 (59%), Gaps = 9/267 (3%)

Query: 222 DDLIAELEVAKSLS-------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
             L+ +LE A+          +  + RAE  N AKS FLA+MSHELRTPLNAI GFSE++
Sbjct: 563 QALVQKLEQARQQQMILARKYEMAKIRAEAANHAKSEFLANMSHELRTPLNAINGFSEIM 622

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             E  GPL +  YKEY GDI  SGQHLL+LIN+ILD+S+IEAG+  L    +SL +++ +
Sbjct: 623 ATEMFGPLGHARYKEYAGDILGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIED 682

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            + +++ RA++  ++I   + P L  + AD + ++Q++LNLL+NA+KFT   G V ++  
Sbjct: 683 TLRLVRQRAEKAGLKIRVHM-PQLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAA 741

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T     +I++ D G GIA  ++  +   F Q        ++G GLGL + +S++  H G
Sbjct: 742 MT-DNNVHIAVADTGIGIAAKDMERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSG 800

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481
           +  I S   +G  V  ILP  +    +
Sbjct: 801 RLEIDSTEGQGTTVNVILPIRQTGQAV 827


>gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1366

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 159/307 (51%), Gaps = 13/307 (4%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              L+ +           VK+L+  A +  +        +   + ++ A+  N AKS FLA
Sbjct: 846  GMLATYQKQPRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLA 905

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +MSHELRTPLNAILGF++++   +         ++Y+  I +SG++LL+LINE+LDLS+I
Sbjct: 906  NMSHELRTPLNAILGFTQLLGQNSG---LTSQQQDYLQIIQQSGKYLLSLINEVLDLSKI 962

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
            EAG   L+ +  +L  ++     MLQ++A  KN+ +  ++D  +   V  DE  +RQV++
Sbjct: 963  EAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQLDQDIPDYVKTDESKLRQVLV 1022

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL NA+KFT   G V +   + S     Y  ++D GPGI   E   +   F Q  +   
Sbjct: 1023 NLLDNAIKFTDA-GYVTLRGSFVSSVSQLYFEVEDTGPGITPDEQERLFQPFVQTDVGR- 1080

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNH 486
              +QG GLGL I+Q  +   GG+  I S +  G + +  LP   +      L ++PE+  
Sbjct: 1081 RHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFMFNLPVEVINSENIDLEYLPEEEL 1140

Query: 487  ESTQYKC 493
                  C
Sbjct: 1141 TIDDISC 1147


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 11/305 (3%)

Query: 173  ALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKDDLIAELEVA 231
             L  Q+I+S+ VL I + G+    + F          +    IL   +       E    
Sbjct: 742  TLLEQSILSILVLPIFVGGVFWGYVGFDECKEERNWSEDEFSILKAFSNSIAEAIERSQM 801

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    + ++ AE  N AKS FLA+MSHE+RTP+N ILGF E++    +        ++Y+
Sbjct: 802  EQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELST----EQQDYV 857

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             + HR+ + LL LIN+ILD S+IEAG+  + E    +  +V + + +   +A+EK +E+ 
Sbjct: 858  QEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMH 917

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
              I  ++   V  D   +RQ++ NLLSNAVKFT   G + V V   +           + 
Sbjct: 918  TLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHT-GEILVIVETINESSDKAEIAFEVS 976

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G GIA  ++  +   F Q   +      G GLGL I+  ++    G   ++SKL +G 
Sbjct: 977  DSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLGQGS 1036

Query: 467  EVIAI 471
            +    
Sbjct: 1037 KFYFT 1041


>gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 130/278 (46%), Gaps = 9/278 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              T     +F +  K +        L   +  +    D  +++AE  N AKS FLA+MS
Sbjct: 266 LLMTVDNQEIFSALNKSILLLFLMGSLGIIIIKSIQKKDRAKQKAELANKAKSEFLANMS 325

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+NAI G   +I    +        K+Y+  I  S   L  LIN+ILD S+IEA 
Sbjct: 326 HEIRTPINAIKGLIYLILDTPLSM----QQKDYLKKIQSSTVSLSRLINDILDFSKIEAK 381

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + +L     +L D++ +      ++A +K +E F   D     +  D   + Q++LNL+S
Sbjct: 382 KLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVPQKLVGDSLRLGQILLNLVS 441

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + V       Q I     +KD G G+ + E   + + F Q   +   
Sbjct: 442 NAIKFTET-GEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEEQQKLFSQFTQADSSTTR 500

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I+Q ++   GG+  + SK  EG      
Sbjct: 501 KYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFT 538


>gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
 gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
          Length = 567

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 333 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 389

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 390 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 448

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 449 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 507

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 508 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 563


>gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1045

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 189/470 (40%), Gaps = 34/470 (7%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPM--------WS-----LITLAVYAANLSLGKK 92
            R S +L     +   I   F       M        W      +I + +   +      
Sbjct: 207 LRESSLLAYVGYICTVIVWQFVWGGHANMMLPQALSHWFDTHTDIIFVLIGIGSGLFTIV 266

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS-- 150
            + + +   +   +    +     +GLC +++ L  P         +   A      +  
Sbjct: 267 FLEAKVTAPKTLPFIKVSIGLLALMGLC-SMVNLFPPVWQNAAVYVVSMLAISCYTYAGF 325

Query: 151 --------ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
                    +    F        +   +   +                    +AL     
Sbjct: 326 ESYSNQFYAARYFIFAWSILATCALIGMFSLVDMLPSNFFTTYCFQFGVFFESALFSLAL 385

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +     +  +++     +  + I  +E      D  RK A   +  KS+FLA+MSHE+RT
Sbjct: 386 MDKSRHQLEIEVQQATNDLRNNIELVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRT 445

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAILGFS+ ++        +   ++ I  I+ +  +L+ ++N++LD+S+IEAG+ +++
Sbjct: 446 PLNAILGFSKELQQGDF----SADKRDQINIINAAADNLMTIVNDVLDVSKIEAGKLQIN 501

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
               S+ +++ E I ++   A  K +E    I+P    +  D   +RQ++ NLL NA+KF
Sbjct: 502 SHPFSINELLEEMIGVMAKSAHLKGLEFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKF 561

Query: 383 TAIGGRVHVTV-GWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + +   G     G +   I I+D G GI+  +   + T+F Q   A+  + QG 
Sbjct: 562 TDT-GHIGLAASGKVLEHGIFELNIKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGT 620

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GLGL I + ++    GQ  ++S   +G      +    +LN  P  + +S
Sbjct: 621 GLGLVICKELVKLMHGQLSLQSSPGQGSTFNVTV-RMNILNTKPSISPKS 669


>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 543

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 9/278 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +++    E+  +  E+E A     E  ++AE  N  KS FLA++SHELRTPL AILGF+
Sbjct: 119 QRVIRYSVERHAMAREMERANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFT 178

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +        +     I ++GQHLL+++N+ILDLS+IEAG   +  S  S   I
Sbjct: 179 DLVLDHEL----EPEVERASLTIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQI 234

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + E I +L++RA  K I++     P +   + +D   +RQ++LNL+ NA+KFT   G V 
Sbjct: 235 IEEVISLLRVRATAKGIDLRFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTER-GFVQ 293

Query: 391 V---TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           V   TV         I + D G G+   ++  +   F Q   +I     G GLGL I + 
Sbjct: 294 VNMSTVELEGKPQLRIDVSDTGIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRR 353

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           ++    G     S+   G     + P   V +   E  
Sbjct: 354 LLELMDGHISASSRPELGSTFQVVFPLHAVEDSGQEYE 391


>gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1260

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 148/282 (52%), Gaps = 9/282 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +  + ++   +++      L          + +A++   +KS FLA MSHE+RTP+NA
Sbjct: 350 LSRGVIFVIEDISDRKKASELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNA 409

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG +E+++  ++    NE  +EY+     +G+ LL +IN+ILD S+IE G+ +L     
Sbjct: 410 ILGMAEMLQETSL----NEDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPF 465

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           +L ++V +   +   RA+EK + + +K+   L+     D   +RQ+I+NL+ NA+KFT++
Sbjct: 466 NLRELVDDVNKLFVYRAEEKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSV 525

Query: 386 GG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG    V  +V          ++KD G GI + ++ TV  SF Q   +      G GLGL
Sbjct: 526 GGVTMSVTESVMDDGAPCCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGL 585

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPE 483
            I++ ++   GGQ  + S+  +G      LP        +PE
Sbjct: 586 AISKKLVELMGGQIWVESEPGQGTTFFFKLPLAPDQKVQLPE 627


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +         + +  AE  N AKS FLA+MSHE+RTP+N ++G +E++   T+    +
Sbjct: 520 VTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL----D 575

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S + LL +IN+ILD S+IEAG+ ++     +L   V + +  + LRA 
Sbjct: 576 AEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAH 635

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           +K +E+   + P +   +  D   +RQV++N+L NA+KFT   G V + +          
Sbjct: 636 DKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTER-GEVVLRIRQEVASNGKP 694

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++++ D G GI   ++ ++  +F Q   +      G GLGL I   ++   GG   + 
Sbjct: 695 LLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVE 754

Query: 460 SKLREGVEVIAI 471
           S   +G      
Sbjct: 755 STPGQGSVFHFT 766


>gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 545

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 12/274 (4%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + +    I + + A+    ++++ AE  N AKS FLA+MSHE+RTPLN ILG  ++++  
Sbjct: 559 RVQISLDIGQRKQAEEALKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT 618

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 N+  KEY+    RS   L  L+++ILD+SRIEAG+ ++ ES   +  I      
Sbjct: 619 ----DPNDEQKEYLLGAIRSTNRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISE 674

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +  + A+ K + +  + D  L  +   DE  +RQ++ NL+ NA+KFT   G++ +     
Sbjct: 675 LFDMEARGKGLLLEFRWDNILPMLLVGDEARLRQILFNLVGNAIKFTEK-GKIRIDASLL 733

Query: 397 SGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      +++ D G GI+E ++  +   F Q   +     QG GLGL I + ++  
Sbjct: 734 PRSSDSSVRVLVTVSDTGIGISEEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKL 793

Query: 452 HGGQFLIRSKLREGVEVIAILPNT-RVLNFIPED 484
             G   I S   EG      LP         PE+
Sbjct: 794 LDGDISIDSTPGEGTTFYLSLPFKLPATKQKPEE 827


>gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 567

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 333 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 389

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 390 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 448

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 449 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 507

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 508 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 563


>gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 891

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/322 (29%), Positives = 167/322 (51%), Gaps = 21/322 (6%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE------ 220
              + +++   +++ +  L I+L+  + + L         + K++   +  +++      
Sbjct: 290 MIVLFISILITSLVFISYLGITLSARILSYLKMTISSMALIEKNHDYSIQIKSDGNDEFT 349

Query: 221 -----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                 + LI+E  + +      ++ AE+ NLAKS FLA+MSHE+RTPLN I+G S ++ 
Sbjct: 350 LFSKNLNALISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILS 409

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P+      +Y+  I  S Q LL LIN+ILD+S+IE+G   L   +  L +I+ + 
Sbjct: 410 ETKLTPI----QHDYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDT 465

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + ++  +A EK++ +   I P L S +  D+  +RQ+++NL SNAVKFT   G V + V 
Sbjct: 466 VSIIISKANEKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPK-GHVQLDVE 524

Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +T          IS+ D+G GI + ++ ++   F Q   +I     G GLGL I++ ++ 
Sbjct: 525 FTKKENNTVELTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVD 584

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
              G+F ++S   EG      L
Sbjct: 585 LMDGEFTVKSTKGEGSTFSFSL 606


>gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 614

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 27/452 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI------TLAVYAANLSL 89
            +    + S+ R +    +   + A I        I   W L+      T+       + 
Sbjct: 22  RVYKEQMTSIARTTTFAMIGYAINAVIAFIAFVGAIPFGWLLVWTICSLTICTGIGLQTY 81

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
            +K                  LV    + L W +L +   G        I  + T+ +A 
Sbjct: 82  ARKF--ETKSKRRNVHSANIALVYAFLLSLPWAVLAVTWLGWLDDNRQIILIALTVGMA- 138

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +  +L    +P A  +S   ++  L  +  +     +  LA + A+ L+F  ++     +
Sbjct: 139 ASGSLLLMPVPAAAAVSAITILAPLIVKWGLLGAEKNFILAALAASFLAFLLFLIAIGGR 198

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +       E+   + ++ V+++ +   R+ AE    AKS F A+MSHE+RTPLN+I+G
Sbjct: 199 MFL-------ERLHALDQIRVSEAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIG 251

Query: 270 FSEV-IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           ++ + +  + +   +       +  +  +G+ LL ++N+ILD S IEAGR +  +S+++L
Sbjct: 252 YTSLVLARQGLSREDTND----LSIVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTL 307

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKFTAIG 386
             ++  C+ +     +EK + I  +IDP L  +   AD   +RQV+LNL++NAVKFT+ G
Sbjct: 308 PPLIEGCVALFFAEGREKGLVIRSEIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFTSEG 367

Query: 387 GRV---HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             V    +     +       ++D GPGI    IP +   F Q          G GLGL 
Sbjct: 368 SVVVGAKILDREENSANVRFFVRDTGPGIRADLIPNLFQRFSQLDNGRDRR-GGSGLGLA 426

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I +SI+  +GG+  I S   EG      +P  
Sbjct: 427 ICRSIVQANGGKIDIESHEGEGSTFWFEVPLE 458


>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 826

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 22/299 (7%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              ++   +     +   L   L+       E+ + A+  NLAKS FLA +SHE+RTP+N
Sbjct: 267 QRKQAEAALYLQLQKTLQLQTALQTKNQALLESSQAAQAANLAKSEFLAMISHEIRTPMN 326

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A++G +++++   + P      ++++  I  SG+ LLN+IN+ILD S+IE+G+ EL    
Sbjct: 327 AVIGMTDLLKDTHLDPH----QQDFVETIRTSGESLLNIINDILDFSKIESGKLELELHP 382

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
             +   V E + ++  +A  K +E+   I+P     +  D   +RQ+++NLL NAVKFTA
Sbjct: 383 FPISTCVEEALDIVNSKATAKGLELAYLIEPGTPNHIQGDANRLRQILVNLLGNAVKFTA 442

Query: 385 IGGRV-HVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            G  +  ++    +                  +KD G GIA      +  SF Q   +I 
Sbjct: 443 DGEVIVTISARDVATAEMTPEVPLSLHELLFEVKDTGIGIAPEHQQKLFQSFCQLDSSIT 502

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP-EDNHESTQ 490
               G GLGL I++ +    GG   + S++  G      +      + +P  ++H +T+
Sbjct: 503 REYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFTM----AASALPGPEDHRATE 557


>gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 702

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 2/254 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      +  AE  N  KS FL +MSHEL+TPLN+I+GFS+++     GPL
Sbjct: 433 RDITARKKAEEALINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPL 492

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE    Y G I  +G++LLN+IN IL+LS++E+   EL+    S+ + + + I     +
Sbjct: 493 -NEKQSRYAGFISSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQ 551

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             +KNI++    D     ++ADE   RQ++ +LL+NAVKFT   G + ++     G    
Sbjct: 552 ILKKNIKLNYNSDSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDIS-SKQEGGIVT 610

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I +KD G GI E  +  +   F Q   ++    +G GLGL +A+  +  HGG   + SK 
Sbjct: 611 IKVKDTGIGIPEDSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKT 670

Query: 463 REGVEVIAILPNTR 476
            +G      LP  R
Sbjct: 671 GKGSSFKVELPVNR 684


>gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 587

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 587

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 1056

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 153/309 (49%), Gaps = 10/309 (3%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
              A+  + I         +  +L  A +    I   +    V       E    IA  E 
Sbjct: 745  AAAIRARWITVRFEHGREVRTILKWAGAVLGVILCMMLLVFVWNRRLAKE----IARREE 800

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             ++     +++AE  +  KS FLA+MSHELRTPLN+I+GFS ++  E  GPLN E  K+ 
Sbjct: 801  LEAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPLNKE-QKKQ 859

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +G +  S +HLL LIN++LD+S+IEA +  L+       + V   +  ++  A++K +E+
Sbjct: 860  MGMVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLEL 919

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISI 405
              K D S   ++ D++ M QV++NL++NA+KFT  G    +  G ++          I I
Sbjct: 920  ELKQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQI 979

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            +D G GI  G+   +   F Q    +    +G GLGL I + ++   GG+  + S++  G
Sbjct: 980  QDTGIGIQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHG 1039

Query: 466  VEVIAILPN 474
                  LP 
Sbjct: 1040 SRFTVRLPV 1048


>gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1044

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 140/258 (54%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+   ++ ++ AE  N AKS FLA+MSHE+RTP+NAILGF ++++      + +
Sbjct: 691 ITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKS----KITD 746

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y+  I R G+ LL+LI++ILD+S+IEAG+ +++   I L +I+ E   M   +A+
Sbjct: 747 EKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLEKAK 806

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK ++I   I+  +  V   DE  +RQ++ NL+ NA+KFT   G + ++V     +    
Sbjct: 807 EKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEE-GLITISVKRDLLQWKDD 865

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I+IKD G GIA  +   V   F Q          G GLGL I + +    GG  
Sbjct: 866 QYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGGTI 925

Query: 457 LIRSKLREGVEVIAILPN 474
            + S+L +G     + P 
Sbjct: 926 QLESELGKGSTFTLLFPR 943


>gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 676

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 4/287 (1%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L   +A  L+   + +  +            EK  L   +        +    AE  +  
Sbjct: 386 LLISIAEQLAIAIHQSELMRSLQDSAQRLTQEKQTLEQRVIERTMALRDALLAAEAASRL 445

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S FLA++SHEL TPL  ++G S  +    +G L+ +  ++Y+  IH SG+HLL++IN+I
Sbjct: 446 RSEFLATISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLDMINDI 504

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEK 366
           LDLS+IEAG+  L+ +  SL+ I    I  L  +A  ++ N+++  +IDP      AD  
Sbjct: 505 LDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALSEQVNLKLDLQIDPRRDRFTADAA 564

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q++ NLL+NA+KFT  GG V + + W         ++D G GI E ++P +   F Q
Sbjct: 565 RIEQILWNLLTNAIKFTPEGGNVTLRI-WVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQ 623

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                +   +G GLGL + + ++  H G+  + S +  G      +P
Sbjct: 624 LDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 149/305 (48%), Gaps = 25/305 (8%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
              G +A         T +L +        QAE+  L    ++AK+ ++  R        
Sbjct: 504 LFWGNIAAKPITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELAR-----ATR 558

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K  FLA+MSHELRTPLNAILG SE       G + N+   + I  I RSG+HLL LIN+
Sbjct: 559 LKDEFLANMSHELRTPLNAILGMSEGFIEGVFGAI-NQKQAKAIATIKRSGKHLLELIND 617

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLS+IE+G+ EL  S +S+  I    +  +Q  A +KNI +   I  +L ++  D++ 
Sbjct: 618 ILDLSKIESGKLELQISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNLDTIQVDDRR 677

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------------------GQYISIKDN 408
           +RQV++NLLSNAVKFT  GG V +TV                              + D 
Sbjct: 678 LRQVLINLLSNAVKFTPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSPHICFRVTDT 737

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA  +I  +   F Q   ++     G GLGL + + I   HGG  L+ S++ +G   
Sbjct: 738 GIGIASEDISKLFQPFTQLDSSLNRNYTGTGLGLALVKRITTLHGGTILVNSEVGQGSCF 797

Query: 469 IAILP 473
              +P
Sbjct: 798 TVRIP 802


>gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 673

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 6/294 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  + K+N  +     E+  +   L  AK +++  R+ AE  N+ KS+FLA+MSHELRTP
Sbjct: 136 SAEILKTNQLLQQEIVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTP 195

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+G+SE++  +       +   + +  I  +G+HLL LIN++LDLS+IE+G+ +L  
Sbjct: 196 LNAIIGYSEILREDAEDLEQEDFIPD-LKKIDTAGRHLLGLINDVLDLSKIESGKMDLLI 254

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             ++L  ++ + +  +Q   ++K   +  +    L  +  D   + Q++LNLLSNA KFT
Sbjct: 255 EPVNLDMLIDKVLGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFT 314

Query: 384 AIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G +   +     T G      + DNG G+ E +   +   F Q   +      G GL
Sbjct: 315 EQ-GIIEFQIYHQINTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGL 373

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH-ESTQYKC 493
           GL I +      GG   + S    G      LP    +  I + +  ES+  K 
Sbjct: 374 GLTITKDFAEMMGGHIKVASDFGFGSTFTLSLPIQAKITPIKKASKLESSTLKA 427


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 1132

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL   +     T+  A + + AKS FLA MSHE+RTP+NAI+G +E+++   +     
Sbjct: 730 ITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEIRTPMNAIMGMAELLKETRLDV--- 786

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+    ++G+ L++LIN+ILDLS+IEAG   +      +  ++ +   M++ RA 
Sbjct: 787 -DQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMMKPRAL 845

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQ 401
           EK +    +I P +   +  D   +RQV++NL+ N++KFT   G+V + +G         
Sbjct: 846 EKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNK-GQVRLVIGKNPSKKDTL 904

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ISI D G GI E     +   F Q   ++     G GLGL I++S++   GGQ   +S+
Sbjct: 905 LISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIWFKSR 964

Query: 462 LREGVEVIAILP 473
              G      +P
Sbjct: 965 PGTGTTFFFTIP 976


>gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 667

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 24/361 (6%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +    +  LL  L++S LS+ +L          V    + Q      ++++        A
Sbjct: 193 IAWSVALALLFWLAVSLLSHLVLRQVTRSFNNLVSGIAALQDGDYGTLIEVDSDDEPGRA 252

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +    +   L + +               E   A+    + +  AE  N AKS FLA+M
Sbjct: 253 AAAVNGLARSLQQRS--------------EENRQAREELLQAKSEAEAANTAKSEFLANM 298

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP++ ++G ++++ L  +    N     Y+ +I    ++L++LIN++LD+S+IEA
Sbjct: 299 SHEIRTPMSGLIGNAQLLRLTQL----NAEQTGYLTNIETDAKNLMSLINDVLDISKIEA 354

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+ EL  +  SL   V + +   + R   K I +  +I   L  S++ D+  ++Q++ NL
Sbjct: 355 GKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTHEIAADLPDSLFGDQLRLKQILYNL 414

Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NA+KFTA  G + V V              S+ D G GI       +   F Q   ++
Sbjct: 415 VGNAIKFTAK-GEIRVKVELLERHDDKARFCFSVTDTGIGIRPEAREKIFAPFIQADASV 473

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
                G GLGL I   ++   GG   + S+  +G      LP       +P+        
Sbjct: 474 TRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTFSVTLPFLINSQPLPQQETLPQDR 533

Query: 492 K 492
           K
Sbjct: 534 K 534


>gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 1236

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 19/288 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A     + ++ A   + AKS FLA+MSHELRTPLNAI+G+SE++  E     
Sbjct: 667 EDITERKAASVALKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSG 726

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 + +  I  +G++LL LIN+ILD+S+IEAGR +L     S+  ++   I   Q  
Sbjct: 727 YRHIVPD-LERICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPL 785

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395
               +  +  +    +  ++AD   +RQ++LNLLSNA KFT   G++ + V         
Sbjct: 786 VDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNAAKFTTA-GQIKLKVSPQPAEFPN 844

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T+       + D G G++  ++  +   F QG  +      G GLGL I+Q      GG 
Sbjct: 845 TAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQMMGGT 904

Query: 456 FLIRSKLREGVEVIAILPN----------TRVLNFIPEDNHESTQYKC 493
             I S+L  G     ILP             +    P+   E++   C
Sbjct: 905 ITIDSQLDCGSTFTVILPREVKQTKQQSTESLDESDPQPQQETSSILC 952


>gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 806

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   + +   +           I E++ A+     + K   +    K  FLA+MSHELR
Sbjct: 371 LLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELR 430

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+ILG  E ++ +  GPLN +  +  +  +  SG+HLL+LIN+ILDLS+IEAGR +L
Sbjct: 431 TPLNSILGMIETLQNQVYGPLNGKQVQS-LEIVENSGRHLLSLINDILDLSKIEAGRMDL 489

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             +  S+  +V   +  +Q  A +K I +  +I P+L  V  D++ + QV++NLL+NA+K
Sbjct: 490 DLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIK 549

Query: 382 FTAIGGRVHVTVGWTSGRGQY---------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           FT  GG+V V       +G+           ++ D G GI    +  +   F Q   A+ 
Sbjct: 550 FTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALN 609

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               G GLGL + + I+  HGG   + SKL EG      +P
Sbjct: 610 RRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650


>gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
 gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
          Length = 1065

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 140/268 (52%), Gaps = 10/268 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E     + E +  A + N AKS FLA+MSHE+RTPLN I+GF+E++    +    N+  +
Sbjct: 395 ETLVETAKEDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDL----NDEQR 450

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  I +S ++LL++IN ILDLS+IE+   E+        +     +    + A EKNI
Sbjct: 451 EFLSIIDKSSENLLSIINNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNI 510

Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQY 402
           ++   +DP++   +  D   ++++++NLLSNA+KFT+ GG V++ +              
Sbjct: 511 DLNFYMDPTINPKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIK 570

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S++DNG G+ + +   +  +F Q  +++     G GLGL I+   +   GG+  + S  
Sbjct: 571 FSVQDNGIGMTQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAK 630

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
            +G      +P   V++      H  T 
Sbjct: 631 DQGTTFFFTIPFEEVISTETNYAHAFTD 658


>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 645

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 160/348 (45%), Gaps = 13/348 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVK 213
             F L  A       V++A +     S ++  I    M   +         +L  +  ++
Sbjct: 165 LLFTLNLAGVGILCIVIIATAVGVFNSWNMARIMANRMGRLSAGASVVGDGNLDHRIAIQ 224

Query: 214 ILSCQAEK----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                AE     D + A+L       +++R+ AEE N AKS+FLA+MSHELRTP+N ILG
Sbjct: 225 GDDEFAEFSCAFDAMTAKLASTYLELEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILG 284

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++     G L  +  +E +    +SG  LL +I++ILDLS+IEAG+ ++ E   SL 
Sbjct: 285 VLQLLLSGHAGQL-EKKQRELLLKATKSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLR 343

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
             + + +      AQ K + +   I P +  V   D+  +RQV+LNL+ NAVKFT   GR
Sbjct: 344 KCLSDAVDYFSSEAQGKGLHLTLSIAPDVPDVVKGDQVRLRQVLLNLIGNAVKFT-DHGR 402

Query: 389 VHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V V         T       +I D G GI   +   +  SF Q   + +    G GLGL 
Sbjct: 403 VEVKAVTGNKTATGETEITFTINDTGIGIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLA 462

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           I+  I+   GG+    S+  EG      +P         +  HE+  +
Sbjct: 463 ISSQIVEMMGGRIAFDSREGEGSTFFFTVPLAVEGEGRDDSRHETPPF 510


>gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L]
 gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L]
          Length = 587

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1346

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 23/304 (7%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              T     S + + +  A+        +  +    +  ++AE    AKS FLA+MSHE+
Sbjct: 582 VRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQAEIATQAKSEFLANMSHEI 641

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N ++G ++++    + P      +     I  SG+ LL LIN+ILD S+IEAGR E
Sbjct: 642 RTPMNGVIGMTDLLLDTELRP----EQRSLAESIQSSGEALLALINDILDFSKIEAGRLE 697

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L     +L  ++ +   ++ +RA EK +E+    DP +   V  D   +RQ++ NL+ NA
Sbjct: 698 LESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNA 757

Query: 380 VKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +KFT   G V V V  +  R Q             +++D G G+ E +I  +   F Q  
Sbjct: 758 IKFTHQ-GEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIGVPEDKIDLLFNKFSQVD 816

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA----ILPNTR--VLNFIP 482
            +      G GLGL I++ +    GG+  ++S+   G +        L   +   L  +P
Sbjct: 817 ASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFTARLTLQKKQEEPLPALP 876

Query: 483 EDNH 486
           +D H
Sbjct: 877 QDLH 880


>gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
 gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
          Length = 587

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 751

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E+   +    E ++ AE  N AKS FLA+MSHELRTPLN I+G SE++    +      
Sbjct: 341 EEIHAYQERLKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG---- 396

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              EY   I  +G++LL LIN+ILD+S++E+G+ ++      L  ++      L  +   
Sbjct: 397 ELVEYARTIQTAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIH 456

Query: 346 KNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           KN+    ++   + +V   DE  + QV+ NL+ NA+KFT+  G V + V      G+   
Sbjct: 457 KNLRFVLEVASEIPAVVISDEARLSQVLFNLVGNAIKFTSR-GEVVLRVWMEEEEGRAEL 515

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GI   E+P V   F Q    +    QG GLGL IA+ ++   GG+  + S+
Sbjct: 516 VFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESE 575

Query: 462 LREGVEVIAILPN------TRVLNFIPEDNHESTQYKC 493
             +G      +P        RVL F+ +   E  +++ 
Sbjct: 576 EGKGSCFTVRIPFQVPVSSARVLPFVRDGLEEQVEWRG 613


>gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 571

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 452

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 453 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567


>gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1057

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              +   +  +   +E R +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P
Sbjct: 274 LRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP 333

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +YI  IH S   LL +IN+ILD S+IEAG+  + E    L D++    ++   
Sbjct: 334 ----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYLDDVLHNVSMVTGQ 389

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
           +A EK +E+   I   +   ++ D   + Q+I+NL++NAVKFT  G   V V V  +   
Sbjct: 390 KAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQGEISVSVKVIRSLDD 449

Query: 400 GQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S+KD G G++E +   +  +F Q   +      G GLGL I + ++   GG+  
Sbjct: 450 KIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSICRRLVELMGGEIS 509

Query: 458 IRSKLREGVEVIAILPNTRVLNF 480
           + S+L  G      +    V++ 
Sbjct: 510 VDSELNVGSTFRFNISVGAVMDS 532


>gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
 gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
          Length = 558

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +  EK I +       + 
Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQVNALKGV- 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554


>gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas
           fluorescens SBW25]
 gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas
           fluorescens SBW25]
          Length = 1243

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 107/503 (21%), Positives = 193/503 (38%), Gaps = 31/503 (6%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
              I      L         F   + TL  ++L       P     V  I    ++    
Sbjct: 289 ANDIQAATGLLQNAAALSKRFAERVATLEAQTLSFRLSPSPEVASAVGAILDELSRLSRV 348

Query: 73  PMWSLI------TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
              S+        L VY                   +   R  +     + GL       
Sbjct: 349 LPSSVGLQTKATALTVYDQIAGYRAAFARFHQASNSLSGARDQVRNEARSAGLLVARFAG 408

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                          +  +   ++I   S      + F++   V +A + + + +  +  
Sbjct: 409 EARSEALVHNDRGMLATVVAGTVAILLASAIAWSTSRFVAQPIVALASAMRRLAAGDLNA 468

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL------------------ 228
              +      +   T       ++ ++I   +AE +    ++                  
Sbjct: 469 AIASVGRGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDTLHQQ 528

Query: 229 ----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               E       + R +AE  N AKS F+A++SHELRTPL  IL   E +   T+ P + 
Sbjct: 529 TEVLEAQAVELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLPPAD- 587

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             ++  I    R+   L+N +N+ILD S+ EAG++EL  + I L  +V        + A+
Sbjct: 588 --WRVQIDRAQRNALRLMNRVNDILDFSKAEAGKFELCPAPIDLNKMVGVLAEDAAMVAE 645

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K   +   IDP+L +V+ D +   +++LNL+SNA+KFT  GG VH+ V    G    ++
Sbjct: 646 GKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTALDGDRFELA 705

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G GIA  ++P +   F Q   +      G G+GL + + ++   GG+  + S+  +
Sbjct: 706 VQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKYLVELMGGEVGVNSEPGQ 765

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP     + +P +  +
Sbjct: 766 GSCFFVRLPLGDEQDTLPTEASD 788



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 12/157 (7%)

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +S+  ++ + + +       + + + ++I   L  +  D   +  +++NL+ NA +  
Sbjct: 1085 ETVSVPALIEDALRLSAGSLARQEVAVVKEIA-DLPLLSLDRHRVLLILVNLIGNARQAM 1143

Query: 384  A----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                     + +      G    +S+ DNG GIA   +  +       S    + + G G
Sbjct: 1144 DGVVDRNPCITLDASLVDGSVLRMSVADNGNGIAPEHLARIF------SHGFTTRKDGHG 1197

Query: 440  LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
             GL          GG+  + S    +G      +P  
Sbjct: 1198 FGLHSCALAAQEMGGRLTMHSDGAGQGATFTLDIPLE 1234


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +  +  + L   A     +    + +    +    AE  N AKS FLA+MSHE+RTPLN 
Sbjct: 608 IIDTAKQRLKTTARLIGEMVSRSMVEQDLQKATHLAETANRAKSEFLANMSHEIRTPLNG 667

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E         +  KEY+     S + L  L+++ILD+SRIEAGR E+ E   
Sbjct: 668 VLGMLQLLETT----DQTDEQKEYLFGAISSTKRLTRLLSDILDISRIEAGRMEIVEVEF 723

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
           ++         +    A+ K + +    D  L  V   DE  +RQ++ NL+ NA+KFT  
Sbjct: 724 NIKKTRDSIKELFNPEAKGKGLRLEFGRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEK 783

Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G + +                ++++D G GI E  +  +   F Q   +     QG GL
Sbjct: 784 -GEIRIDASLLPSSSDSHVRVLVTVRDTGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGL 842

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           GL I + ++   GG   I S + EG  V   LP       +P+   +S + 
Sbjct: 843 GLSIVRRLVKLMGGDISIDSTVGEGTTVYLSLPFK-----LPKTEQKSVEI 888


>gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 713

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 2/257 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  ++   + + +AE  +  KS F+ +MSHELRTPLN+I+GFS+++       L
Sbjct: 458 RDITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSEL 517

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N  + +Y+ +I +SG+ LL+LIN+ILD+S++EAG+ E+      +   + +  ++++  
Sbjct: 518 TNA-HHKYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPL 576

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A +KNI+I    + + + ++AD    +QV+ N+L+NA KFTA  G+V VT   +  +   
Sbjct: 577 ASKKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAK-SGEKETS 635

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS+KDNG GIAE +   V   F Q   A     +G GLGL + +S +  HGG   + S+ 
Sbjct: 636 ISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEE 695

Query: 463 REGVEVIAILPNTRVLN 479
            +G   I  +P   + +
Sbjct: 696 GKGSTFIFTIPQQDIPD 712


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 107/475 (22%), Positives = 190/475 (40%), Gaps = 32/475 (6%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
           V ++  +       V  V  +  W    P +  W L  +A            +    +  
Sbjct: 176 VVTISAIFEASVALVASVGRLVLWADFMPFWMTWWLGVVAGIITVSPFLIHCLVWRPQRK 235

Query: 102 EVYVWRIW--LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT----------LLIAL 149
            +   ++     V  + +GL   + T+     + P    I+                + +
Sbjct: 236 FLKPAKMVEGFAVMVVTLGLLVVIYTVTIYTYFKPLPYLIFPVILYTSFRFNRLGWALVV 295

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           + S+L           + + +  A   +  + + +      G L                
Sbjct: 296 ASSSLFVAWATVRRKGALYSISGASRVEPRLLIQIELFVSVGALVAISLAAAVREKRHLS 355

Query: 210 SNVKILSCQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             ++ L+ + E   L    +   A      +R  AE+ + AKS FLA+MSHE+RTP++ I
Sbjct: 356 KKLERLNERLEVLVLQRTTQLLKANEELTASRTAAEQASQAKSDFLANMSHEIRTPIHGI 415

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG S +     +     E  ++ +  +      LL+LIN ILD+++IEAGR+E+   + +
Sbjct: 416 LGMSAL----VLATGLTEEQRDNMTTVKDCADMLLHLINGILDVAKIEAGRFEVELVSFN 471

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           L  +++  + +L+ RA+EK + +   +D  + +V   D   +R  +LNL+ NA+KFT   
Sbjct: 472 LCHVIKSTLHILEPRAREKRLRLKWDVDARVPTVLVGDSGKLRHCLLNLVGNALKFTHQ- 530

Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V VTV              + D+G G++  ++  +   F Q   +I     G GLGL 
Sbjct: 531 GYVQVTVAPYVDGLYPSLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLYGGTGLGLC 590

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLN----FIPEDNHEST 489
           I Q  +   GGQ  + S+   G     +LP      TRV        PE   E+ 
Sbjct: 591 IVQRFVELMGGQICVESEYGTGSTFCILLPFYLIEGTRVEETSNYEAPEAPSETA 645


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1267

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  +    E ++ AE     KS FLA+MSHE+RTP+N I+GF  ++    +    N
Sbjct: 487 VTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQL----N 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                Y+  I    QHLL +IN+ILD S++EAG+  +     +L +++ +   +L+ +A 
Sbjct: 543 SKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQAS 602

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398
           +K +E+   +   +   +  D   ++QV++NL +NA+KF+   G + + V       +  
Sbjct: 603 QKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQ-GNIFLRVEKIDQSDSDS 661

Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
               IS  ++DNG G+ E ++  +  SF Q   +      G GLGL I++ ++   GG+ 
Sbjct: 662 DQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEI 721

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            + S+   G      LP   + + I  +  ++   K 
Sbjct: 722 SVSSEYGVGSTFSFSLPFGILASGIQTNQRDNIDLKG 758


>gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 662

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 24/326 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            + P+ V  S  A + + ++ + +  +          I  H  +   +I       +  +
Sbjct: 287 FYAPIRVQTSLLAGVILGLIVLGVLAITLLLRLLTGKIIIHASEMEAEIRRKTLALEKEL 346

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E    ++     ++ A+  N AKS FLA+MSHE+RTP+NAI+G ++++    +    NE
Sbjct: 347 QERRQMQTALQLAKEEADVANRAKSAFLANMSHEIRTPMNAIIGIADLLWETPL----NE 402

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+++     +G +LL LIN+ILDLS+IE+G+  L      L ++V + I +   RAQE
Sbjct: 403 EQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDTIALFSTRAQE 462

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--------GW 395
           K +E+  ++   +  +   D   +RQV+ NLL NA+KFT  G   +H+ V        G 
Sbjct: 463 KGLELTVRLPDDIPRLLLGDVGALRQVLFNLLGNAIKFTETGAVSLHIEVADPVVSPSGA 522

Query: 396 TSGR----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           T+                S+ D G GI       +  SF Q   ++     G GLGL I 
Sbjct: 523 TADPNPPHFPGQPVHLRFSVIDTGLGIPPEWQDRIFDSFTQVDASLTRRFGGTGLGLAIC 582

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GGQ  + S+  +G      
Sbjct: 583 KRLVELMGGQIWVDSEPGKGSTFTFT 608


>gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   + ++ V            I E +  ++L  + ++ AE  N +KS FLA+MSHE+RT
Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRT 294

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G  ++       P       +Y+  I  S   LL LIN+ LDL+R+E G+  + 
Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAID 352

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           +    L DI+ +   ++  RA EK +++   + P++   +  D   + QV++NL SNA+K
Sbjct: 353 QIPFDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           F+   G V ++              ++++D G GIA  ++ T+   F Q   +      G
Sbjct: 413 FSDK-GEVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGG 471

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486
            GLGL IA  ++   GG+  + S+  +G       P  R+      IPE   
Sbjct: 472 TGLGLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQRKASIPEQED 523


>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 2109

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 18/299 (6%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRAEEENLAKSRFLASMSHE 259
             Y++    K        Q  +  L    E  AK  +++ R  AE EN AKS FLA+MSHE
Sbjct: 1569 IYVSLSARKVLDASGQVQYYEGSLTDITERKAKEAAEQARHEAEAENEAKSMFLATMSHE 1628

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            +RTP+N ILG +++++   +    NE     I  I+ +GQ LL+++N ILD S+IE+G+ 
Sbjct: 1629 IRTPMNGILGMAQLMKQGQLNSEQNEQ----IDTIYNAGQTLLSILNNILDYSKIESGQL 1684

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            EL E    + D++ E   + +  AQEK+++I   I+ +L +V  D + + Q+++NL SNA
Sbjct: 1685 ELEEKPFLIQDVMDEIYNLFKPVAQEKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNA 1744

Query: 380  VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            +KFT   G + ++               +I+D G GI E     +   F Q   +I    
Sbjct: 1745 LKFTHQ-GYIRISCEGLPDTQDKLKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRY 1803

Query: 436  QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--------ILPNTRVLNFIPEDNH 486
             G GLGL I + I+    G+    S   +G              LP       +P+ + 
Sbjct: 1804 GGTGLGLAITRQIIERLNGEIGFESTEEQGTTFWFELSFPITDELPAEVANVPMPKPST 1862


>gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 743

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 155/362 (42%), Gaps = 11/362 (3%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
            G  W + T                 A+LL A+        ++  A+F     ++  L  
Sbjct: 235 NGQTWLVYTEKTSYPQGWAIYYAVPYASLLKAMVKQTGIQLVIVAALFALLVYLLKRLIE 294

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             +        +    +    +              ++    +E + L++++  +     
Sbjct: 295 TNLAGPVRNIAASIAGIRPLEAESDIPLEQAGNIT-ELHGIISEVNHLMSQVRQSHHQLT 353

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             R  AE  N  KS FLA+MSHELRTP+N ++G ++++ +  +    N    EY+  I  
Sbjct: 354 AARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTEL----NAEQAEYLASIEH 409

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S   L+ L+N+ILDLSRIEAGR EL      L +++   +  L  +A+ K +++  + D 
Sbjct: 410 SADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSAQARLKWLQLSVEFDR 469

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
           +L   V  D    RQ++LNL  NA+KFT   G V VT   +S        ++ ++D G G
Sbjct: 470 NLPQLVLGDSLRFRQILLNLTGNAIKFTDQ-GAVLVTAALSSADEDSVTLHLCVQDTGIG 528

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I    +  +   F Q   +      G GLGL I++ +    GG+    S+   G      
Sbjct: 529 ITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLWAESEPGIGTTFHLE 588

Query: 472 LP 473
           LP
Sbjct: 589 LP 590


>gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 676

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L   +A  L+   + +  +            EK  L   +        +    AE  +  
Sbjct: 386 LLISIAEQLAIAIHQSELMRSLQDAAHRLTQEKHTLEQRVIERTMALRDALLAAEAASRL 445

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S FLA++SHEL TPL  ++G S  +    +G L+ +  ++Y+  IH SG+HLL++IN+I
Sbjct: 446 RSEFLATISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLDMINDI 504

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEK 366
           LDLS+IEAG+  L+ +  SLI +    I  L  +A  ++ N+++  +IDP      AD  
Sbjct: 505 LDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALSEKVNLKLDLQIDPRRDRFTADAA 564

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q++ NLL+NA+KFT  GG V + V W         ++D G GI E ++P +   F Q
Sbjct: 565 RIEQILWNLLTNAIKFTPEGGNVTLRV-WVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQ 623

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                +   +G GLGL + + ++  H G+  + S +  G      +P   +  
Sbjct: 624 LDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIPYQEIRE 676


>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1582

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +   +     + N       +  +  I   +  +   + ++++A+  N AKS FLA+MSH
Sbjct: 791  WMLSVGKVFERDNQGRAIRISGINVNIDAAKQLEKELELSKQKADSANRAKSDFLANMSH 850

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+NAI+G S +     +    +   + YI  ++RS + LL +IN+ILD S+IEAG+
Sbjct: 851  EIRTPMNAIIGMSHLALETDL----DRKQRNYIDKVNRSAESLLGIINDILDFSKIEAGK 906

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             ++ +   SL D++ +   ++  +A++K IE+    + SL      D   + QV+ NL +
Sbjct: 907  LDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLPFYFNGDPLRLSQVLTNLSN 966

Query: 378  NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NA+KFT   G V + V   S           I D G G+++ +   +  +F Q   +   
Sbjct: 967  NAIKFTEQ-GEVQIKVYAHSINETNIELAFEISDTGIGMSKEQQLKLFKAFSQADSSTTR 1025

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I+Q+++   GG     S+   G     ILP 
Sbjct: 1026 KHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPL 1066


>gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
 gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
          Length = 587

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583


>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
           HAW-EB4]
 gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 929

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 169/369 (45%), Gaps = 23/369 (6%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++    F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLFFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRLTGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA+E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I RS  +LL++IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     SL + + E + +L   A+EK +E    +D  +   V  D 
Sbjct: 355 DILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVIDVDSRIPEDVTGDA 414

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
               Q+I NL+ NA+KFT  G  ++ + +     +  ++   I D G GI + +  ++  
Sbjct: 415 MRFSQIITNLVGNAIKFTDKGSVQLKLQLEEIKEQKVHLRCEIIDTGIGIDKQQQSSLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVL 478
           +FGQ   +I     G GLGL I + ++   GGQ    S+ ++G      LP       + 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFWFSLPLNISQYPIH 534

Query: 479 NFIPEDNHE 487
           + +P    E
Sbjct: 535 DTLPLATLE 543


>gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 747

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 2/268 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L + ++            I   +  +      +  A   N AKS  +A++SHELRTPL 
Sbjct: 466 RLTRIDLGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLT 525

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+GFS+V+     G L N++ ++Y+  IH  GQ L N+INE+LDLS+I++G  ++S   
Sbjct: 526 TIIGFSDVLLKGKAGDL-NDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEY 584

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I++ ++       +   A +K + I  KI+  +  ++ADE  ++ ++ NLL N+VKFT  
Sbjct: 585 IAVHELFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFT-D 643

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + + +          S+ D+G GI   ++  +   F Q          G GLGL + 
Sbjct: 644 DGSITIKLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLV 703

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++  HGG   + S++  G +    +P
Sbjct: 704 KRLVELHGGNIWVESEVGTGSKFTFTIP 731


>gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 617

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 3/272 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   + +   ++L+ +   +      +  +  +++++K AEE N AKS FLA+MSHELR
Sbjct: 72  ILEQRVEERTAELLTAKNLAEQAQKMADADRVKAEQSQKIAEEANYAKSHFLANMSHELR 131

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+G+SE+++ +           + +  I  +G+HLL LIN +LDLS+IEAGR EL
Sbjct: 132 TPLNAIIGYSEMLQEDAEDLNQESCVLD-LKKIQGAGKHLLGLINTVLDLSKIEAGRMEL 190

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ E +  +Q   ++K   +    D +L  +  D   +RQ++LNLLSN  K
Sbjct: 191 YIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLGQMHTDLTKLRQMLLNLLSNTAK 250

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G++ + V    G      I DNG G+ E +   +   F Q   +      G GLG
Sbjct: 251 FTEQ-GQIRMEVRR-DGEWINFCIADNGIGMTEEQQKKIFQPFTQADASTTRRYGGTGLG 308

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           L I +      GG   + S+  +G   +  LP
Sbjct: 309 LAITKQFSEMMGGVIWVESEFGQGSIFMMSLP 340


>gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 631

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 153/323 (47%), Gaps = 9/323 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          ++  L     + ++ L +    +   +            +     +S
Sbjct: 151 FLLTTEAIKILLLIIGVLWVAFRLLVNPLQLLSGAVSDFSGGKVPSKVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             AEK +  + ++   ++  +E R RAE  N  KS FLA+MSHE+RTP+N I+G + ++ 
Sbjct: 211 VLAEKYNRSVEKVREHQTELEEERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLG 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P      KE++  I  S   L+ +I++ILD S++EAG+ EL   +  L  I+ + 
Sbjct: 271 DTKLDP----QQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++A++KN+++   IDP L   V  D   ++QV+ NLLSNA+KFT  G  ++ V +
Sbjct: 327 ISLHTVKAKQKNLQLLSDIDPHLPAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVEL 386

Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        + D+G GIA+     +   F Q   +      G GLGL I   ++  
Sbjct: 387 TRQEHDVAMIRFRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNL 446

Query: 452 HGGQFLIRSKLREGVEVIAILPN 474
            GG+  + S+L  G      +P 
Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPV 469


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 14/395 (3%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
                +      W    +   I           +            +  A  L+AL+IS 
Sbjct: 114 DRPHRERAVYADWSNVTVAVPIRSEDGVVGTVSITASLNQVWQAIAWNLALSLLALTISF 173

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT---ALSFFTYITYHLFKS 210
           +  F +   +  +    + +L+  A    +  D S    + +              L + 
Sbjct: 174 VIAFAIASKMLAAILAALGSLTDTAQYVANSKDYSRHAKIYSDDEIGRLGDTFNSMLAEI 233

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +      ++D L   ++         ++ AE  + AKS FL++MSHELRTP+NAI+G 
Sbjct: 234 AERDRQLADQRDHLEDTVQERTQALSVAKEAAEAASRAKSTFLSNMSHELRTPMNAIIGM 293

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + +++ +   PL  +     +G I  +  HLL L+N++LDLS+I+A R  L ++A S+ +
Sbjct: 294 TYMLKRQNADPLQVDK----LGKIDNAANHLLQLLNDVLDLSKIDAERMTLEQTAFSIPE 349

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           +  +   +L  RA+   +     +D  L    +  D   ++QV+LNL  NA+KFT   G 
Sbjct: 350 LAADVASLLTPRAESARLRFILDVDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTER-GE 408

Query: 389 VHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V +               +S++D G GIA   I  +   F Q   +      G GLGLPI
Sbjct: 409 VRIVARVVEDDEKAVHIELSVRDTGIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLGLPI 468

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            Q ++   GG+  + S    G E    +   R   
Sbjct: 469 CQRLVRLMGGEIQVVSTPGAGSEFTFTVRLQRAEP 503


>gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1055

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 11/313 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
              AI      D +   +   +   +      +   +          +  I   ++A   
Sbjct: 360 VAWAIEGKKEFDTAFRVVWQDSSVKYIKALARVHNDSQGSALFMIGTNWDITHEKLASEK 419

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E +K+A+  N AKS FLA+MSHE+RTPLN ++GF+++++   +    NET ++YI  I
Sbjct: 420 LKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSKL----NETQQKYISTI 475

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           ++S   LL++I  ILD S+IEAG+ +L  +   L+++ ++ I +++ +A +K++E+   I
Sbjct: 476 YQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAHKKDLEVLLHI 535

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY--ISIKDN 408
           D  +   VW DE  MRQV++NLLSNA KFT   G + + +               +++D 
Sbjct: 536 DNDIPRFVWIDEVKMRQVLVNLLSNATKFTTE-GEIELKIDLQERLDEEMVVLRFAVRDT 594

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA      +  +F Q   +      G GLGL I+  ++   G + L+ S    G   
Sbjct: 595 GIGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVESITGRGSVF 654

Query: 469 IAILPNTRVLNFI 481
              +P    ++  
Sbjct: 655 YFDIPVKATVDAA 667


>gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
 gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
          Length = 587

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis]
          Length = 579

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + E   E++  I +  + L +L
Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +L+ +A EK I +   +      V  D
Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKADEKGISLQLNVPKDPQYVSGD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL++NA+ +T  GG V + V       Q I + D+G GI + EIP +   F
Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDIQ-IEVADSGIGIQKEEIPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  + S+   G      L
Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTL 571


>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 913

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 173/423 (40%), Gaps = 29/423 (6%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
             ++A  A+    G++ +     +   Y+     +   +A      +  +          
Sbjct: 348 FFSIASGASVALFGREFLQVKEHMPRTYLMLNAYIAICLAC--LVAVFFMDAHAAAKANV 405

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVF-----LSFFPVVVALSTQ------AIMSMHVL 185
           +     A LL   ++  + +   P   +          V+  +            +  VL
Sbjct: 406 VIAVTGAFLLFGTALVRIRHRYRPAIYYLIGQGAVIVGVMFTVLASNNLVPYFYKAPDVL 465

Query: 186 DIS----LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDET 238
            ++    L             +     +S V+    +AE +     ++    +    D++
Sbjct: 466 KVAGAFELLFFSFGLADLINVLKAREARSAVEADVARAEAEARQTYIQQLDTSNRQLDKS 525

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +       A+S FLA+MSHE+RTP+N +LG  E++E   +    N+  K+ +    RSG
Sbjct: 526 NQELAAAIQARSEFLANMSHEIRTPMNGVLGMLELVENANL----NDVQKQQLEIARRSG 581

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q LL LIN+ILDLS+IE+G+  L     SL D + +   +   + +EKNI         +
Sbjct: 582 QTLLALINDILDLSKIESGKLALESLPFSLQDFLSDLRELYGKQLREKNITCTLACAEDV 641

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAE 414
              V  D   + QV+ NL+SNAVKFT  GG V ++V       +      + D G GI +
Sbjct: 642 PEWVAGDRIRLWQVLTNLVSNAVKFTKDGG-VTISVNLLQEGQEERLSFQVTDTGIGIPK 700

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q   +      G GLGL IAQ+++   GG   +RS+  EG      +P 
Sbjct: 701 AAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLKLMGGAISVRSEEGEGSTFAFSMPL 760

Query: 475 TRV 477
            R 
Sbjct: 761 LRA 763


>gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
 gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
          Length = 545

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   + L+   + +  I+ +  ++L  +A EK I +       + 
Sbjct: 368 RMQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQVNGLKRV- 426

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVEL-LEDKYNAYIKVSDTGIGISKEEIPR 485

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E      L  E ++ AE  +  KS FLA+MSHE+RTPLN ++G + ++    +    +
Sbjct: 364 VTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL----S 419

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EY   I  SG  LL LIN+ILD S+IEAGR EL E A  L  ++ E + ++  RA+
Sbjct: 420 DEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAR 479

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           EKN+ +  + + ++   V  D + MRQV+LNL+ NA+KFT  G   + V V    G    
Sbjct: 480 EKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALL 539

Query: 403 ISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           + +   D G GI+ GE+  +   F Q   +      G GLGL I + ++   GG  +++S
Sbjct: 540 LEVAVADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKS 599

Query: 461 KLREGVEVIAI 471
           +   G      
Sbjct: 600 QPGRGSTFSFT 610


>gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
 gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
          Length = 587

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 620

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 167/332 (50%), Gaps = 11/332 (3%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +    +   +P +  L           ++   +    +     +   +       +   +
Sbjct: 292 AGLFFTWATVPGSPLLVTVSASYDGLLRSWWQVLPYHLGAIACIILVILALVLKVHRQIR 351

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
               ++   + ++          +     R+ +EE N AK+ FLA+MSHELRTPLNAI+G
Sbjct: 352 HLNGLIVALSNRE----------AALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIG 401

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FS+++     G L +   ++Y  DI+ S  HLL+LIN+ILD+++IE+G Y L E   +L 
Sbjct: 402 FSDMLANGIHGALAD-RQQDYARDINLSALHLLDLINDILDVAKIESGGYLLHERPCNLA 460

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            I+R    ML  R +EK + +        + V ADE+ M+QV+LNLLSNAVKFT  GGR+
Sbjct: 461 AIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRI 520

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V++G   G G  + + D GPGI    +  VL  F Q       + +G GLGLP+A++++
Sbjct: 521 TVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALV 580

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             H G   + S+  +G  V   LP  RVL   
Sbjct: 581 EKHEGALRLDSQPGQGTRVSVTLPAARVLPPQ 612


>gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 587

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
 gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
           12472]
          Length = 664

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 88/271 (32%), Positives = 130/271 (47%), Gaps = 11/271 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +     L+ A     E R  AE  N AKS FLA MSHE+RTPLN ++G +++++   +  
Sbjct: 2   EARSQALQQANVQLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRL-- 59

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  + Y+  +HRSG+ LL +I++ILD S+IEAG++EL      L  +V E +  L  
Sbjct: 60  --DDRQRHYVSVVHRSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAP 117

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A  K +E+   +      V  D K + QV+ NL+ NA+KFT   G V   V        
Sbjct: 118 VAYGKGLELMCALPLMPVEVVGDGKRLGQVLTNLVGNAIKFT-ESGHVLAKVDRAGESDA 176

Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS+KD G GIA  +   +   F Q   +      G GLGL I+Q ++   GG+  
Sbjct: 177 GVTCRISVKDTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIE 236

Query: 458 IRSKLREGVE--VIAILPNTRVLNFIPEDNH 486
           + S+   G E      LP        P    
Sbjct: 237 LESEPGSGSEFHFTLTLPRASDSQLCPPAED 267


>gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 587

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 927

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG------ 191
                  LLI L +SA+    L Y V     P+         +    LD+ + G      
Sbjct: 174 IFSAFLVLLIGLGLSAVFAHRLMYDV---TRPITHMKKMVDRIRRGHLDVRIEGKMHGEL 230

Query: 192 --MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             + +   +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    K
Sbjct: 231 DSLKSGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 290

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+  +   ++      +  +Y+  I +S  +LL++I +IL
Sbjct: 291 SEFLANMSHELRTPLNGVIGFTRQMLKTSLTA----SQTDYLQTIEKSADNLLSIIKDIL 346

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L        + + E + +    A EK +E+  K+DP +   +  D   +
Sbjct: 347 DFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKVDPKIPLGLVGDPLRI 406

Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ N++KFT  G     V +             ++D G GI+E +   +  +F 
Sbjct: 407 QQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQAFS 466

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 467 QADASISRKYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 680

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 118/424 (27%), Positives = 188/424 (44%), Gaps = 4/424 (0%)

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
             G +  +       + +++ V    L   +++   +     +          Q      
Sbjct: 257 LAGWYNDRLKRILETAAVSVVVTLLALLALRQLGRLETTTQALRASERR---SQALFDSS 313

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           + ++ L+ P            +   L A ++     + +               S +   
Sbjct: 314 FQVMGLLSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDELATAFRHSIEKAA 373

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           S   +      +   A          +F     +     E  D+   +E A+ L+    +
Sbjct: 374 SGRFVRYETDVVTDGATRVMDVTIKPVFDEKGTVTVLVVEARDITERVEAAERLAAALDQ 433

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                N AKS FLA+MSHELRTPLNAI+GFS+++  E  GPL +  Y++Y+  +  SG+H
Sbjct: 434 AE-AANRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRH 492

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL+LIN++LD+S++EAGRY L ES +   D +  C  +  + A    + +     P L  
Sbjct: 493 LLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCPPCLPK 552

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + ADE+ +RQV+LNLLSNAVKFT  GGRV V+       G  I+++D G GI    +  +
Sbjct: 553 LLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTGIGIPADALARI 612

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           L  F Q   +I +   G GLGL I + +MA HGG   + S+   G       P  RV   
Sbjct: 613 LEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAATIRFPVCRVAPP 672

Query: 481 IPED 484
           +  D
Sbjct: 673 VATD 676


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 13/241 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+N ILGF+E++    +    N   +E +  I + G++LL+LI
Sbjct: 541 NQAKSEFLANMSHEIRTPMNGILGFAEILLQTNL----NSQQEESVRIIQQCGENLLDLI 596

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILDLS+IE+G+  L ++  SL  ++ E + +++ +  EK +EI   I   L   +  D
Sbjct: 597 NDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGD 656

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEI 417
              +RQV+ NLLSNA KFT   G V V V                 S+ D G GI   ++
Sbjct: 657 PTRIRQVLNNLLSNAAKFTHE-GHVEVKVNGQKDHSVETDSFTLVFSVSDTGIGIPREKL 715

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  SF Q   +      G GLGL I++S++   GGQ  + S++  G +    +P   V
Sbjct: 716 DLIFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIPGLPV 775

Query: 478 L 478
           +
Sbjct: 776 V 776


>gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 917

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +   +  +  AE  N AKSRFLASMSHELRTPLNAI+G+SE++  E     + 
Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  I  +G+HLL+LIN+ILDLS+IEA + E+     S+ D++R+    +     
Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
               E+ Q  +  L  + +D+  +RQ + NLLSNA KFT  GGRV + V           
Sbjct: 516 RNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRADRDWL 574

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G++  +   +  +F Q   +      G GLGL I +S     GG   + S+
Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634

Query: 462 LREGVEVIAILPN--TRVLNFIPED 484
           + +G      +P    R  +  P +
Sbjct: 635 VGKGSVFTIEVPAQCEREADGSPAE 659


>gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
          Length = 632

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 10/335 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F+L          +V  L     + ++ L +    +   +            +     +S
Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210

Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             A+K +  + ++   ++  +  R +AE  N  KS FLA+MSHE+RTP N I+G + ++ 
Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLS 270

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P      KE++  I  S Q L+ +I++ILD S++EAG+ EL+        ++ + 
Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I +  ++AQ+KN+++   IDP L   V  DE  ++QV+ NLLSNAVKFT  G  ++ V++
Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386

Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +         + D+G GIA+     V   F Q   +      G GLGL I   ++  
Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG   + S+L  G      +P T V++ +P    
Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480


>gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1433

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 19/349 (5%)

Query: 147  IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
               +++      L +A  L     +   + Q      + +     +           T+ 
Sbjct: 778  FTGAMTLPVPATLSFAELLGLIHPLDREAFQRAHQTAIANRGSFQIEHRIRVADAAQTWR 837

Query: 207  LFKSNVKILSCQAEK-------DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
             ++    +++    +          I++ + A++   + ++ AE    AK  FLA+MSHE
Sbjct: 838  WYQVQASVITDANNQPIRLIGMSFDISDRKQAEAELLQAKETAEAATRAKGDFLATMSHE 897

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            +RTP+NA++G + ++    + P      ++Y   I  +G+ LL++IN+ILD SRIE+G  
Sbjct: 898  IRTPMNAVIGMTGLLLNTPLSP----EQRQYGETIRNAGESLLSVINDILDFSRIESGHL 953

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
            +L E    L   V E I +L  RA EK++ +  +IDP + +V  AD   +RQ+++NL++N
Sbjct: 954  DLEEHPFELPHCVAEVIDLLANRAVEKSLHLEVQIDPGVPAVIVADSARLRQILVNLVAN 1013

Query: 379  AVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            A+KFT   G V + V   +       +    S++D G GIA  ++  +   F Q   +  
Sbjct: 1014 ALKFTDQ-GEVMIRVKSVAVSPDGQQQTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSST 1072

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                G GLGL I++ +    GGQ  ++S+   G      LP    L  I
Sbjct: 1073 RRYGGSGLGLVISKRLCERMGGQIRVQSRAGVGSTFSFTLPVRVSLTPI 1121


>gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 830

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 161/290 (55%), Gaps = 1/290 (0%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           +SL  +      +       +              +DL   +E         +++AE  +
Sbjct: 530 LSLTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDLVRAKEQAELAS 589

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +KS FLA++SHELRTPLNAI+GFSEV+     GPL N  Y+EY GDI +SG+HLL +IN
Sbjct: 590 RSKSEFLATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIVQSGRHLLAVIN 649

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +ILD+S+IEAG+  L    + +  ++   + +++ RA+  ++ +  ++D  L  +  D +
Sbjct: 650 DILDVSKIEAGQMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVDKDLPIIDGDRR 709

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
              Q+++NLLSNA+KFT  GG+V +     +     + ++D G G++E EI   L  F Q
Sbjct: 710 RCLQILVNLLSNAIKFTPEGGQVTIGASRENDG-IRLKVQDTGIGMSESEIQVALEPFRQ 768

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              ++    +G GLGLP+A+S++  HGG  ++ S+  EG EV   LP  +
Sbjct: 769 VDGSLSRQYEGTGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLNQ 818


>gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
 gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
          Length = 889

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE+ +  KS FLA+MSHE+RTP+N ILG  ++++ + M    N+   +Y+
Sbjct: 514 EQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPM----NDKSTDYL 569

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                S + L  +IN+ILD S+IEAG+  L +    L +++      L + AQEKNI + 
Sbjct: 570 KKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNIYLK 629

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            K          D   +RQV LN++ NA+KFT  GG V V    T        + D G G
Sbjct: 630 FKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGG-VTVEFKLTDDEQVCAIVSDTGIG 688

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +  +  +   F Q   +      G GLGLPI +S++    G   + S+   G +    
Sbjct: 689 IPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQFYVY 748

Query: 472 LPNTRVLNFIPEDNHESTQY 491
           LP  +       DN E+  +
Sbjct: 749 LPLEQADKIPSTDNTENLDF 768


>gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 969

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 160/307 (52%), Gaps = 12/307 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRF 252
            + F +          V           L+A  E+ K   +E    ++ AE+ N AKS F
Sbjct: 407 VIGFISAAFKEDRALTVAEKRIFLLLATLLANSEIRKKYEEELIKAKQEAEKANQAKSIF 466

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLN I+GF+ +++   +    +E  ++Y+  I +S + LL +IN+ILDL+
Sbjct: 467 LANMSHEIRTPLNGIIGFTNLLKETKL----DEKQEKYVSIILKSSELLLEIINDILDLA 522

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           +IE+G+Y+L     +L   ++  +++ + +A+EKN+E   +ID  +S  +  D   ++QV
Sbjct: 523 KIESGKYQLEPLETNLKMELQSSLLLYEAKAKEKNVEYEIRIDKEISDCLILDSVRLQQV 582

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + NL++NA+KFT  GG V V V   S          S+ D G GI + ++  +   F Q 
Sbjct: 583 MFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIRFSVIDTGIGIPKEKLEKIFEPFEQA 642

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S+++     G GLGL I+  I++  G + ++ S+  +G      L   +        + +
Sbjct: 643 SVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEEEKGSHFYFDLKLKKCSKKEITQDMK 702

Query: 488 STQYKCY 494
           + + K Y
Sbjct: 703 TIKSKKY 709


>gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055]
 gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger
           B]
 gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum]
 gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           Australia 94]
 gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI]
 gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 587

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
 gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
          Length = 558

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  FLA++SHEL+TP+ +I GFSE +    M   N +  + ++  I +  + 
Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 381

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI ++LDLS+IE   ++L+   + + +++ E  ++L+ ++Q+K I +   +     S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVL-RHVS 440

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP +
Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 499

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   + S++ EG      LP +
Sbjct: 500 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 554


>gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1084

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 10/328 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +      +  + + +  +S  + D     ML ++++    +   L        +  A + 
Sbjct: 489 MLAGALAMYKSSARKVTLSDFIKDNFFKVMLISSIAVAVVLLTILMLLQKARKAEAAARK 548

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 E   +      ++AE  N AKS FL++MSH++RTP+NAI+GF+ +         
Sbjct: 549 AASDTQE-LNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI---D 604

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  K+Y+G    S  HLL+LIN++LD+SRIE+G+  L E  ++L D++ +   ++  +
Sbjct: 605 DTDRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQ 664

Query: 343 AQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
              K +E++   +D +   V+ D+  + Q++LNLLSNA+KFT  GG V V V   +G   
Sbjct: 665 IYAKQLELYMDVMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVR 724

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   IKDNG G+++     +   F +   +  S  QG GLG+ I ++I+   GG  
Sbjct: 725 GCGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTI 784

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484
            +++   +G E    +P        P +
Sbjct: 785 EVQTAQGKGTEFTVCVPMRAQTEQRPVE 812


>gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 587

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 12/317 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             +       I +   +AT L         L +S       Q     L           +
Sbjct: 252 NRVPVWQPSHIQVLQSIATYLGAAIAHAILLDQSRQLATRLQLANQTL----RQKNKELE 307

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + R +AE  N  KS+FLA+ SHELRTPLN I+GF +++        N E   +++ + +R
Sbjct: 308 QARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLVLDGM--AENREEELDFLQEAYR 365

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
           S  HLL LIN++LD+++IEAG+ +L      L  + ++      L+A +K +++   +  
Sbjct: 366 SALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQASQKGLQLSFHLPN 425

Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGI 412
                 +  D + + QV+LNL+ NA+KFT   G V V      G      I + D G G+
Sbjct: 426 TSDQILLLGDYQRLLQVMLNLVGNAIKFTPK-GSVTVRADILPGNPGLARIRVIDTGIGV 484

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAI 471
           +  +   +  +F Q   +      G GLGL I+Q ++   GG+    S     G  V   
Sbjct: 485 SLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGEGLGSTVTFT 544

Query: 472 LPNTRVLNFIPEDNHES 488
           +P  R      + N E+
Sbjct: 545 VPLYRKPLLSGDPNPEA 561


>gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
 gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
          Length = 561

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  FLA++SHEL+TP+ +I GFSE +    M   N +  + ++  I +  + 
Sbjct: 327 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 384

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI ++LDLS+IE   ++L+   + + +++ E  ++L+ ++Q+K I +   +     S
Sbjct: 385 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVL-RHVS 443

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP +
Sbjct: 444 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 502

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   + S++ EG      LP +
Sbjct: 503 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 557


>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 656

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +     +    E + A +   + R+ +E+ N AKS FLA MSHELRTP+N 
Sbjct: 244 LTDLARHINNLACALEQSGQEQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNG 303

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E  ++    N+   EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 304 VLGMLQLLETTSL----NDEQSEYAALATESTEHLLKVINDILDFSRIERGALELEAIPF 359

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA 384
           +L+++++  I + Q  AQ++ +++     P L    V  D   +RQ+++NL+ NA+KFT 
Sbjct: 360 NLLELLQGSIQVFQHSAQQRGLQLLLDAQPGLERLEVRGDPTRIRQILVNLIGNALKFTE 419

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G + V   W     Q +    +++D+G GI    +  +  +F Q   +I     G GL
Sbjct: 420 E-GHIRVETHWQPLDDQVLWFTCAVRDSGIGIDGERLEHMFDAFQQADTSISRRYGGTGL 478

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLPIA+++    GG     S+L +G      +P 
Sbjct: 479 GLPIARTLAERMGGTLRAESQLGKGSVFTLEIPL 512


>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 777

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 159/340 (46%), Gaps = 16/340 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +F     +   +    I  + V   ++   +  +++   +   H  +S       Q E +
Sbjct: 183 LFWGQVRLSAFIVLTIIFLLLVPVATMTLSINRSMARLIHAIRHTGRSGDLSTQVQFEGN 242

Query: 223 DLIAELEVA---KSLSDETRKRAEEENLAKS----------RFLASMSHELRTPLNAILG 269
                 ++A     +    R   +E   A++          +FLA+MSHELRTPLNAI+G
Sbjct: 243 AEGEMRQIALSFNQMLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIG 302

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +SE +  E +   N ++ ++ +  I+++G HLL+++N+ILD+S+IEAG+ +L      + 
Sbjct: 303 YSE-MTQEDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDIT 361

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ + + ++    +++  +    + P +  + AD+  +RQ+++NLLSNA KFT   G +
Sbjct: 362 QLLHDVVAIMTPLMEKQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQ-GEI 420

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V    G    +S+ D G G+   ++  +  +F Q   +      G GLGL I+Q   
Sbjct: 421 TVEV-QNHGEHIVVSVHDTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFC 479

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              GG   + S   +G      LP   +     +   E T
Sbjct: 480 HMMGGSIRVESTPGKGSHFTVQLPRKTLRPPAQQPAGEKT 519


>gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 592

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 141/316 (44%), Gaps = 10/316 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                ++    V +L     +   +  +     +    +F   I     K+       + 
Sbjct: 275 WSVGVVTPLWYVGSLIQSVYVKQGLFAMISIAFILFISAFIALILLSWNKT------LED 328

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E     +ELE +        K+ +E +  K+ F++ +SHEL+TPL A+   SE +     
Sbjct: 329 EVKSKTSELERSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRE--- 385

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + E  +E +  I R+      +++++LD+SRIE+G+ + +   +++ +I+   +  +
Sbjct: 386 SECSREIKEEMLDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNV 445

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A++K+I+I       + ++  D+  + ++ +NLL+NA+KFT   G V V V      
Sbjct: 446 TKHAKDKSIKIMVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVE-DHED 504

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               SIKDNG GI E +   +   F Q          G GLGL I + I+   GG+  + 
Sbjct: 505 YLQTSIKDNGIGILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLE 564

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G      LP  
Sbjct: 565 SETGKGSTFTFRLPKE 580


>gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 571

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 147/310 (47%), Gaps = 24/310 (7%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +  T       +TY L +        +     L   +    S  +ET +     +  
Sbjct: 256 LGTLATTYNKMAKALTYTLDERARVARELRDLNRSLEDRIRERTSQLEETNRDLSRASRH 315

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLNAILGF+++I     G + NE  +E + DI  +G+HLL LIN++
Sbjct: 316 KSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPNE-LRESMEDIRINGRHLLRLINDV 374

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS+IEAG+  L+    SL  ++   I   +  A EK +E+  +++  L     D K M
Sbjct: 375 LDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRLELVARVEADLPPALGDSKRM 434

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG-----------------------WTSGRGQYISI 405
            QV++NL+ NA+KFT  GG V+VT                          TS     IS+
Sbjct: 435 TQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQPETRNPKPETPTSPDFIEISV 494

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   E+ ++   F Q   +I     G GLGL IA+ ++  H G     S++  G
Sbjct: 495 ADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIAKRLVEMHRGSIWADSQVGRG 554

Query: 466 VEVIAILPNT 475
                 +P  
Sbjct: 555 STFYVRIPLR 564


>gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 1175

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ ++ +    E +  AEE +  KS FLA+MSHELRTPLN I+G S +   +      +
Sbjct: 523 ISDRKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMSYIALNQ----DTD 578

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  IH SG  LL +IN+ILD S+IEAG+ ++     +L D++++    + L+A 
Sbjct: 579 PRIKNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDMLKKLSDFIHLKAY 638

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           EK++E+    D +  + V  D   + Q++LNLLSN++KFT   G + ++V       +  
Sbjct: 639 EKDLELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFT-DHGEIEISVEALILDAADS 697

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +I+D G G+ + E+  +  SF Q    I     G GLGL I + ++    G   + 
Sbjct: 698 KLVFTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITKQLIELMDGNISVE 757

Query: 460 SKLREGVEVIAILPN 474
           S+   G      LP 
Sbjct: 758 SEKGVGTTFKVELPL 772


>gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
 gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
          Length = 587

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583


>gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
 gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
          Length = 1117

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 132/278 (47%), Gaps = 9/278 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D+   E E  +         A   N AKS+FL++MSH++RTP+NAI+G +EV +      
Sbjct: 577 DEQRYEEEQQRQALQTALDNARAANEAKSKFLSNMSHDIRTPMNAIVGMTEVAKAHLG-- 634

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +  +E +  I RSG HLL LIN++LD+SRIE+G+  LS    +L ++V E   +++ 
Sbjct: 635 -EQDRVRECLDKISRSGSHLLGLINDVLDMSRIESGKMSLSAEPFNLAEMVTEAAELVRP 693

Query: 342 RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
           +A+ K I I           V  DE  +RQV +N+LSNAVK+T  GG V V V       
Sbjct: 694 QAENKQIHIDIHLYGLKNEKVIGDELRLRQVGVNILSNAVKYTPEGGSVEVEVRQAKSSR 753

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +       D G G+ +  +  +   F +   +  S   G GLG+ I ++I+    G 
Sbjct: 754 KGYQSFIFRCADTGIGMTQEFLEKLFLPFERAKDSTDSKVVGTGLGMAITKNIIDLMNGD 813

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             + S+   G      +P         E   E    +C
Sbjct: 814 IQVESEPGAGSVFTVTVPLKLQEEVQGEGPKEWKDARC 851


>gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1]
 gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1]
          Length = 587

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583


>gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
 gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
          Length = 587

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583


>gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
 gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
          Length = 587

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583


>gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
 gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 165/351 (47%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LLI L +SA+  + L Y V     P+    +    +    LD+ + G      
Sbjct: 174 VFSAFLVLLIGLGLSAVFAYRLMYDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 228 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +   T+      +  +Y+  I +S ++LLN+IN
Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIEKSAKNLLNIIN 343

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E + +    A EK +E+  KIDP + + +  D 
Sbjct: 344 DILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDS 403

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + ++V   S +   +     ++D G GI+E +   + 
Sbjct: 404 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQKDDVVELQFMVRDTGIGISERQQAQLF 462

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 17/338 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
              +  +  L  +A++   +       F     +L     +    + + L+      +S 
Sbjct: 205 LAISMAMTRLRSAAINQEEIQREGMKLFSSPNQSLLDWRWIFGDPVSLVLSVSCTPVVSE 264

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                     +   I S       L           DE RK A+E+N AKS FLA+MSHE
Sbjct: 265 NI---RGRLWAFTDITSLHITNSQLSEL----NIELDEKRKIADEQNQAKSAFLANMSHE 317

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N ++G + ++   ++     +  ++Y+  I  SG+ LL+LIN+ILD S+IE+G+ 
Sbjct: 318 IRTPMNGVIGMTSLLISTSL----TDEQQDYVETIRISGETLLSLINDILDFSKIESGKM 373

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           EL     SL  ++ E   +L ++A EK +++   ID  +   +  D   +RQ+++NL+SN
Sbjct: 374 ELETQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPSEIIGDVTRLRQILVNLVSN 433

Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            +KFT   G + +++      G       S+KD+G GI + +   +  SF Q   +    
Sbjct: 434 GIKFTEK-GEILISIELLEKAGSIYTLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRK 492

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+Q ++    G     SK  EG   I  +
Sbjct: 493 HGGTGLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTI 530


>gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
 gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
          Length = 587

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +   +    +
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583


>gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 823

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 10/285 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                L +S  +    QA       EL    +   E RK AE  N AKS FLA+MSHE+R
Sbjct: 386 RYEARLRESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIR 445

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+ AILGF+E    +    LN     E +  I R+G+HLL LIN+ILD+S+IE+G +E+
Sbjct: 446 TPMTAILGFAE----QVSASLNRPEDCEALSIIRRNGEHLLKLINDILDISKIESGLFEI 501

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
            ++   L  ++ + +  +  +A +K I +      ++   +  D   ++Q ++NLLSNAV
Sbjct: 502 EKTTCDLRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAV 561

Query: 381 KFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT  GG V ++V  T          + I D G GIA   +  +   F Q   ++     
Sbjct: 562 KFTEQGG-VDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFG 620

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL I++ ++   GG   ++S L  G      LP  ++ +  
Sbjct: 621 GTGLGLAISKRLIELMGGDLQVKSILGSGSSFTITLPTGKISHSA 665


>gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 792

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 1/290 (0%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             + A  ++          +S   +     E +    +L +     +    RAE  N AK
Sbjct: 495 TVITAADVTAIRRQEVERQRSADSLRKTVDELEASQEKLSLLARKYEIAMTRAEAANQAK 554

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLNAI GFSE++  E  GPL +E YK Y  DI +SGQHLL+LIN+IL
Sbjct: 555 SEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGYAHDILKSGQHLLSLINDIL 614

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+++IEAG+  L   A+SL ++  + I +++ +AQ+  + +  +    +  + AD +G++
Sbjct: 615 DMAKIEAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTLSLE-AGDVPEIEADYRGLK 673

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV+LNL+SNAVKFT  GG + V+V   +     I++ D G GIA  ++  +   F Q   
Sbjct: 674 QVMLNLISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGIGIAAADLARLAQPFEQVEG 733

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                 QG GLGL + +S++  HGG+  + S+  EG  V   +P  R + 
Sbjct: 734 QHSKTTQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSFDIPIRRPVQ 783


>gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 821

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 164/352 (46%), Gaps = 11/352 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           + +  LS   LP          ++ L    ++       SL  +L      F+       
Sbjct: 226 IVLEGLSGASLPRVNLGISRVDIMVLVAAPVVFQGR---SLGVLLLAYTDDFSQRQRMQV 282

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +S +  L            ++      ++  +   E +  +S F+A+MSHELRTPLN+++
Sbjct: 283 QSVLDALGGSLNNAMTYKMVQRQALKLEQANQELLEADRLRSEFVANMSHELRTPLNSVI 342

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS V+       L  +    ++  IHR+G+HLL+LIN+ILDLS+IEAGR E+    + +
Sbjct: 343 GFSSVLMKNRNQSLLEKDL-NFVEKIHRNGKHLLSLINDILDLSKIEAGRMEVELRPVLV 401

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            D+VR+   MLQ +A+ KN+ +  +    L  +  D   +RQV++NL+ NA+KFT   G 
Sbjct: 402 QDVVRDTSEMLQTQAEAKNVALRVEGQLDLPYIQTDGDKLRQVLINLVGNALKFTER-GS 460

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + VG    +   I + D G GIAE ++ TV   F Q          G GLGL I +SI
Sbjct: 461 VTLKVG-VESQWLRIDVIDTGIGIAEDKLMTVFEPFRQADAGTTRQYGGTGLGLAITRSI 519

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP-----EDNHESTQYKCYA 495
           +    G+  + S   +G      LP   +    P     E   E  ++   A
Sbjct: 520 VEMLDGRVELDSVQGQGSTFSVYLPMNSMAEKPPKPKHSEPTAEKVEHSARA 571


>gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
 gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
          Length = 587

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 937

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 10/343 (2%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                  +     L +A  +   ++  +   +           + +    + +  ++  G
Sbjct: 349 ANTHTTILLCLGALTLATILGVYTSRWIARPILHLSQASESIAAGELNQQVEIPSVNELG 408

Query: 192 MLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
            LA + +     +                  ++L + +E       E +  A+  N AKS
Sbjct: 409 RLAQSFNRMAQQLRDSFTTIEQTNQQLAKTNEELESRVEERTHELKEAKLTADAANHAKS 468

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN ILG+++++        ++E  +  I  I++ G HLL LIN+ILD
Sbjct: 469 DFLANMSHELRTPLNGILGYAQILARTA----SDEKQQRGIDIIYQCGSHLLTLINDILD 524

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           LS+IEAG+ EL      L   ++  + + +++A++K+IE   +   + +  + ADEK +R
Sbjct: 525 LSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQKSIEFIYQPPENSAMGIVADEKRLR 584

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           QV++NLL NA+KFT   G V   V    G        I+D G G++  ++  +   F Q 
Sbjct: 585 QVLINLLGNAIKFTDK-GSVTFRVEVLLGDITNLRFYIQDTGIGMSPQQLEKIFLPFEQV 643

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             + K   +G GLGL I+Q  +     +  + S+L  G +   
Sbjct: 644 GDS-KRQSEGTGLGLAISQRFVELMASKIQVESQLGVGSKFFF 685


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +  + +    E ++ AE  N  KS FLA+MSHE+RTP+N ++G + ++    +   
Sbjct: 454 RDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRL--- 510

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  + +   I  SG+ LL +IN+ILD S++EAG+ +L  +   L+ +V   + +L  R
Sbjct: 511 -SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPR 569

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--GWTSG 398
           A  K IEI   IDP L   V +D   +RQV++NL  NAVKFT  GG  + V++  G  + 
Sbjct: 570 AHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAP 629

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI       + + F Q   +      G GLGL I++ +    GG+  +
Sbjct: 630 AMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGV 689

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S +  G      LP   +    
Sbjct: 690 ESAVGRGSRFWITLPLELLAPQS 712


>gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 579

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + E   E++  I +  + L +L
Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +L+ +A EK I +   +      V  D
Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL++NA+ +T  GG V + V       Q I + D+G GI + EIP +   F
Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  + S+   G      L
Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTL 571


>gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
 gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
          Length = 587

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++L+   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583


>gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
 gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
          Length = 587

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +  H  +    +    A+ +    +L  ++   +  R  AE+ ++AKS FLA+MSHE+RT
Sbjct: 300 LEEHRHRLEELVAKRTAKLERRTEQLRKSREELERARDAAEQASIAKSEFLANMSHEIRT 359

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G +E++E    G   +E  + Y+  I  S   L++LIN+ILD S+IEAGR EL 
Sbjct: 360 PMNGVIGIAELLE----GTELSEQQRRYVSIILHSADTLMDLINDILDFSKIEAGRLELE 415

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                L D + + +  L  RA +K +E+   I P +   +  D   +RQ+I+NL+ NA+K
Sbjct: 416 TIPFVLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIK 475

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V V V               ++D G GI E +   +  +F Q   +      G
Sbjct: 476 FT-ENGEVVVDVTLVGQGDHGAHLQFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGG 534

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GLGL IA  +    GG+  + SK   G     
Sbjct: 535 TGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTF 567


>gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
 gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
          Length = 937

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I RS  +LL++IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP + + V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPAGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   S     +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
          Length = 929

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LLI L +SA+    L + V     P+    +    +    LD+ + G      
Sbjct: 174 IFSAFLVLLIGLGLSAVFAHRLMHDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 228 GELDSLKNGINSMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +   T+      +  +Y+  I  S  +LLN+IN
Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIENSANNLLNIIN 343

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP + + +  D 
Sbjct: 344 DILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLKIDPKVPAGLVGDP 403

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++QV+ NL+ N++KFT  G   + V +         +   ++D G GI+E +   +  
Sbjct: 404 LRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQ 463

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 464 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 853

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 8/338 (2%)

Query: 138 TIYKSATLLIALSI-SALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLAT 195
                A L+ A+++ +   ++ L   + L    +   A S     +     I  +     
Sbjct: 164 FFITFAGLVFAVAVLTVFMSYWLKKHITLPLRGLSEWATSVYLHKNFKARAIKRSDDEIG 223

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L+               I+S        IA  +  +      R  AE+ N +KS FLA+
Sbjct: 224 QLADSLNAMLTELSKQESIISLNHSLTAEIAVRKQTEQELINMRDSAEQANRSKSDFLAN 283

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NAI+GF +++    +    ++   +++  +  S + L NL+N+ILD++++E
Sbjct: 284 MSHEIRTPMNAIIGFVDIVLEGDL----DQKQSKHLMTVRNSAKDLHNLLNDILDVAKLE 339

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ EL  +  S+  ++ + I   +L+A++K +   Q+I   L      D   ++QV++N
Sbjct: 340 AGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDLPAQFLGDALRLKQVLMN 399

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+KFTA  G + + V   +       I+D G GIA+ ++  +  SF Q   +    
Sbjct: 400 LIGNAIKFTAS-GSITIAVEQINQEQLQFIIRDTGIGIAKDKLEHIFESFTQADTSTSRK 458

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLG  I++ ++   GG+  + S    G      L
Sbjct: 459 YGGTGLGTTISKRLVELMGGKIWLESDEGVGTTFYFTL 496


>gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 598

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 181/449 (40%), Gaps = 21/449 (4%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY--AANLSL 89
           D       LH         I  L   +   +   +             +        L L
Sbjct: 12  DSAVRRRLLHTALRNATRSIWMLLAAMALVVLLGWLGGRPLAGGVAAAVGGVAALMRLQL 71

Query: 90  GKKVMNSDI-KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
            ++  +       E      WL V   A+GL W L T            T+Y    +  +
Sbjct: 72  ARRHASEPPRSDAETARVVQWLDVSAAAVGLMWALCTFTVYPALDETARTLY-LVMVCGS 130

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           ++ SA    M   +        V ++   +++   V   +LA +           +  L 
Sbjct: 131 IAYSAQFMAMAGRSFTWLTLLQVGSIVVVSLVLDPVRSAALAAIAPLYGLAMLNASRELR 190

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  + L    E        E   +     ++ A+  ++AKS+FLA+MSHE+RTP+N IL
Sbjct: 191 TTVTESLRRGLEA-------EAVNTTLQRAKQAADAASIAKSQFLATMSHEMRTPMNGIL 243

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  +++    +    ++  +  +     SG+ LL +I+++LD S IE+G+ +L  + +S+
Sbjct: 244 GALDLMRDTPL----DKRQRALVRTAVASGESLLCIIDDVLDHSTIESGKLKLDPTPMSM 299

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +      +L+  A+++ +++  +I+  +  +V  D   ++QV+LNL+ N +KFT  GG
Sbjct: 300 HAVAASAAALLRSTAEQRGLKVDLQIEADVPDAVVGDASRLKQVLLNLIGNGIKFTERGG 359

Query: 388 RVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + +          G    + D G GI    +P +   F Q       +  G GLGL 
Sbjct: 360 -VTLRLSRAPAPPGMCGVRFEVADTGIGIPAQAVPKLFQPFSQVDATRSRSHGGTGLGLS 418

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I+Q I+A  GG+  + S    G      L
Sbjct: 419 ISQRIVAAMGGRITVDSVEGRGSRFSFTL 447


>gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
 gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
          Length = 949

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E  +A+    + +++AE  N+AKS+FLA+MSHE+RTP+N I GF ++++   +   
Sbjct: 301 EDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSL- 359

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K++I +   + + LL +IN+ILD S+IEA +  + +   +L + + + + +L  +
Sbjct: 360 ---EQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPK 416

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EK +E++  I   +   V  D   +RQ++ NL+SNAVKFT  G   V V         
Sbjct: 417 AVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEENET 476

Query: 401 QY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 +KD G GI +  I  +  SF Q   +      G GLGL I+  ++   GG+  +
Sbjct: 477 AVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHV 536

Query: 459 RSKLREGVEVIA 470
            S   +G     
Sbjct: 537 ESIFGKGSIFKF 548


>gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 787

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 10/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +    + +  AEE   +K RFLA+MSHE+RTP+NA++G + ++    +   
Sbjct: 247 RDITHRKKTEEALVKAKILAEESMRSKERFLANMSHEIRTPMNAVIGMTNLLLRTPLSS- 305

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E +  I +S ++LL +IN+ILD S+IE+G+        SL  ++++ I    L+
Sbjct: 306 ---EQAECVDIIKQSSENLLVIINDILDFSKIESGKITFESIPFSLHSLLKKTISTFSLK 362

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A EK++ +   +D S   SV  D   + Q+++NL+ NA+KFT   G++ V V        
Sbjct: 363 ASEKDLSLSLSLDASCPDSVMGDSVRLNQILVNLVGNALKFTEK-GKIVVKVQLDRRTPT 421

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 SI D G GI   +  T+  SF Q          G GLGL I + ++   GG+  
Sbjct: 422 HSVVLFSISDTGIGIDAEKQETIFESFTQAGNDTTRKFGGTGLGLAITKKLVELQGGKIW 481

Query: 458 IRSKLREGVEVIAILPNT 475
           ++S+L  G      LP  
Sbjct: 482 VKSELGVGATFSFALPLK 499


>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
 gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 933

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 174/369 (47%), Gaps = 23/369 (6%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  + G L 
Sbjct: 184 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---THPITEMVRVVAKIREGKLDTRVDGNLI 240

Query: 195 TALSFFTY--------ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L             ++ +  +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 241 GELDLLKRGINAMAGSLSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 300

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I +S  +LL +IN
Sbjct: 301 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHA----SQQDYIKTIEKSATNLLGIIN 356

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365
           +ILD S++EAG+ EL     +L +++ + I +L   A+EK++E+   I+PS+  +V  D 
Sbjct: 357 DILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNVSGDA 416

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             + QVI NL+ NA+KFT   G VH+ +  TS   + +     I D G GI +     + 
Sbjct: 417 LRVSQVITNLVGNAIKFTDS-GSVHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQAQLF 475

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP    L+  
Sbjct: 476 QAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPLK--LSPY 533

Query: 482 PEDNHESTQ 490
           P      T 
Sbjct: 534 PISQPLETD 542


>gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 661

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +  AL T  +  +     +         + F         ++V       E   ++  +E
Sbjct: 199 ITGALVTLLLSVVFSAYAAYRINRPLRQALFCAAAAMGHDTSVVEDKSHDETHQVLHTIE 258

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +    +R  AE  +  K  FLA+MSHE+RTP+NAI+G +E+     + P    + +E
Sbjct: 259 RMVNDLKRSRDEAESASRMKGEFLANMSHEIRTPMNAIIGMTELTLETPLSP----SQRE 314

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  S + LL L+N+ILD SRIEAGR  L +    L + V   + ++  +A  K +E
Sbjct: 315 NLEIIGSSAESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALDVVAPQAHGKGLE 374

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QY 402
           +   +   L      D   +RQV++NLLSNAVKFTA  G V + V      G        
Sbjct: 375 LILDVARDLPEAFIGDPTRLRQVLINLLSNAVKFTAK-GEVGLKVERAPSSGTDDGVMLL 433

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            ++ D G GI   ++  +  SF Q   +      G GLGL I +++++  GG   ++S +
Sbjct: 434 FTVSDTGIGIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVSMMGGDISVKSAV 493

Query: 463 REGVEVIAI 471
             G      
Sbjct: 494 GVGSTFRFT 502


>gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
 gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 201/465 (43%), Gaps = 24/465 (5%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
               +    +   +  F  +   +H+      S +L +  +    +G   T       +S
Sbjct: 5   RGGRNDPEAQRQVQRIFLEQSRDIHIRVDRGFSILLLIQWVAAIVMGILLTPTTWLGSFS 64

Query: 77  LIT--LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
                  V      L        + +     W  +++       +C+++L +   G    
Sbjct: 65  GAVENAFVGLIFGGLFSLPAVYCVYVFPGEKWTRYVVA---VSQMCFSILFIHLSGGRIE 121

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
            +  ++ S       +++   +  L              + T  I+   +L ISL G+  
Sbjct: 122 THFHVFVSL-----AALAFYKDVGLLGVA-------SFIVITDHILRGCLLPISLYGVAE 169

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
           +    +      +   ++ ++         + E+  +K    + R+ A + +  KS FL+
Sbjct: 170 SNQWRWLEHAAWILIEDIILIIGIERIRGELHEMAYSKYQLVQAREEALQLSSIKSTFLS 229

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTPLN+I+GFS+++    +    ++   +Y+  I R    LL++IN++LD+S+I
Sbjct: 230 NMSHEIRTPLNSIIGFSDILRDTRL----DKDQTDYVQTIQRCSDSLLHIINDVLDISKI 285

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVIL 373
           E G  ++      + ++  +   + + + QEKN+++   ID S+ +    D   +RQ+++
Sbjct: 286 ENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDIDESIPAFALGDSHRLRQILM 345

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NL+ NAVKFT   GRV +++    G G Y+  + D G GI    +  +  SF Q  ++I 
Sbjct: 346 NLVGNAVKFTDK-GRVCISLQRQPGSGHYVWKVSDTGRGIRLENMSKLFRSFSQEDVSIS 404

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               G GLGL I ++++   GG   + SKL EG      LP    
Sbjct: 405 RTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLPLEEA 449


>gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 796

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 138/311 (44%), Gaps = 22/311 (7%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +         ++   + +     AELE          + AE  N AKS+FLA+MSHE
Sbjct: 243 LAELARAFNGMTGRLRLARQDLTRANAELEQRHHELQLLMEAAESANQAKSQFLANMSHE 302

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEY-------IGDIHRSGQHLLNLINEILDLS 312
           LRTP+NAI+G+SE++  E     +     E        +  I  +G+HLL LIN+ILDLS
Sbjct: 303 LRTPMNAIIGYSEMLMDEAQDMASASALPEVEAVFVPELKKITAAGRHLLALINDILDLS 362

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IEAG+ +L      + ++V +    +Q    +    +   I P +  + AD   +RQV+
Sbjct: 363 KIEAGKMDLYLETFQIPEMVNDVACTIQPLVDKNANRLQIDISPGIGPMRADLTKVRQVL 422

Query: 373 LNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NLLSNA KFT   G + + V      +       +KD+G G+   +   +  +F Q   
Sbjct: 423 FNLLSNASKFTDK-GVIELRVFNHHDEARDWIAFQVKDSGIGMTREQAARIFEAFTQADA 481

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---------- 479
           +      G GLGL I +      GG+  + S+  +G      LP     +          
Sbjct: 482 STTRKYGGTGLGLTITRKFCELMGGRITVDSEPGQGTVFTVRLPLEVAADAHKSAGQEPD 541

Query: 480 -FIPEDNHEST 489
             +PE  H + 
Sbjct: 542 RAMPEAEHAAA 552


>gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 579

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + E   E++  I +  + L +L
Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +L+ +A EK I +   +      V  D
Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLQLNLPKDPLYVSGD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL++NA+ +T  GG V + V       Q I + D+G GI + EIP +   F
Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  ++S+   G      L
Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKSEPGRGTVFTVTL 571


>gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 791

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 13/407 (3%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
               Y A + L  +         E+  W+I              L  +++  +   E   
Sbjct: 124 AGVAYLAQIDLRIQESAPTRSTAELAAWKILDEQADQLDEATQVLSDIIDDQSEALEATI 183

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATA 196
             ++  +++AL+  +L+  +L           V       +              +    
Sbjct: 184 TKQNGRMIVALTGRSLAILVLLSLFVYYLLGRVGNQFKLVRDGAQRFADGDFTTDIPIRR 243

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                 +   +F +  + +  Q E+       E AK  +   +  AEE N AKS FLA+M
Sbjct: 244 YDEVGRLA-AMFNTMAQTIRGQIERL------EQAKDHAQRLQFVAEEANRAKSNFLANM 296

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAI+G+SE+++ E          ++ +  I  SG+HLL LIN+ILDL++IE+
Sbjct: 297 SHELRTPLNAIIGYSEILQEECEDLGQTAMIED-LDRIRLSGRHLLTLINDILDLAKIES 355

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ E+    ISL  ++ +    +     +    +  +    L ++ +DE  +RQ+++NLL
Sbjct: 356 GKVEILPEEISLPQLLHDVRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLL 415

Query: 377 SNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           SNA KFT   GR+ + V           S+ DNG G++  ++  +   F Q   +     
Sbjct: 416 SNAAKFT-EHGRITLRVQPSEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKY 474

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            G GLGL +++ +    GG   ++S+L  G      LP + V++  P
Sbjct: 475 GGTGLGLALSRRLAQLLGGDIRVQSELGVGSTFSVHLPQS-VIDMAP 520


>gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 728

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 170/331 (51%), Gaps = 19/331 (5%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           + +  +  +   ++         +T       + +L           E   A+    ++ 
Sbjct: 256 LGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAEAQERLRQSN 315

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E  +  KS FLASMSHELRTPLN++LGF+++++ +  G LN+    + +  I +SG 
Sbjct: 316 EKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQ-VQFIEKSGW 374

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL+LIN+ILDLS+IE+G+ EL+  ++ + ++  EC+ M+Q RA +K + +  + D  ++
Sbjct: 375 HLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLESDYRIT 434

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----------------VGWTSGR--GQ 401
            VW D + +RQ+++NLLSNA+KFT  GGRV ++                    +      
Sbjct: 435 QVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPINDSTPYL 494

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D+G GI +     +   F Q   ++    +G GLGL + + +   HGG   ++S+
Sbjct: 495 CLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 554

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + +G      LP T +   + ++ +   + +
Sbjct: 555 VNQGSRFRVWLPLTEMRQELAKNYNPEPESR 585


>gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 597

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 169/422 (40%), Gaps = 22/422 (5%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
                  + P   L+ L      L  G  +  S  +   +      +           + 
Sbjct: 23  LLAAVAALVPGSGLLLLTEDGTRLRAGIPLELSADQETALRADLSQVAATAPRSAPVLSS 82

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
                  T     LT+ + A +L  L    ++      A     F +   L         
Sbjct: 83  PAAQRTQTGWVYALTVQRFAGVLFWLIPGTVN----LVAEPAGAFLLHNTLLYALGEQDR 138

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDET 238
               +  G   + +         L + N +  S   EK+      L +E+    +   + 
Sbjct: 139 QEMAAQEGQFRSQIEVLKRQHGRLIEDNYRQYSINREKEQEYARTLESEIARQTAELRKA 198

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             R EE +  KS FLA+MSHELRTP+NAI GF++++   ++      T +EY   I +S 
Sbjct: 199 NARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADTSLDT----TQQEYCRTIRQSS 254

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDL++IEAGR EL   A  L +++     M  L  +EK I I  + D  L
Sbjct: 255 ATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGL 314

Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------GRGQYISIKDNGP 410
              +  D   +RQV+ NL+ NAVKFT  GG V + V   +        +     ++D+G 
Sbjct: 315 PRAYLGDSHRLRQVLTNLVGNAVKFTESGG-VELLVESVAPPEAARQEQWLRFVVRDSGI 373

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +  +   F Q   +      G GLGL I + ++   GG+  + S   +G     
Sbjct: 374 GIPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGRIEVESLEGQGSCFSF 433

Query: 471 IL 472
            +
Sbjct: 434 TI 435


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 20/350 (5%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV--------LDISLAGMLATA 196
           + I L I A   F+    V+ +   +   + T   +              I     +A  
Sbjct: 317 MGILLGIGAGLAFLTILFVYYAASKITRPIITLTELVKDAGKGNLKLQPAIKGPNEIAEL 376

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            S F  +     ++  +IL  + E +    +LE     +++    AE  N+AK  FLA+M
Sbjct: 377 TSSFYRMIEERDQAIQEILDAKQELEFSNQQLENLVEGANQLAVEAELANMAKGVFLANM 436

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N ++G  E++    +    N    EY+  I+ S Q LL +IN+ILD S+I+A
Sbjct: 437 SHEIRTPMNGVIGMGELLMETRL----NSEQTEYVERINSSAQALLRVINDILDYSKIDA 492

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            + +L     +L + V     ++ + A+EK +E    I   +   +  D   +RQ+++NL
Sbjct: 493 DKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPLWLKGDPGRLRQILMNL 552

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
             NAVKFT   G V + V   S           ++D+G GI      T+ T F Q   + 
Sbjct: 553 SGNAVKFTEK-GEVVIRVSLDSEDEETAVIRFEVRDSGIGIPPDVQKTLFTPFTQADSST 611

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479
                G GLGL I++ +    GG+  + S+  +G        LP +R   
Sbjct: 612 TRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLPKSRKAP 661


>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
 gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
          Length = 1052

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 10/254 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              +   +  +   ++ R +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P
Sbjct: 276 LRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP 335

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +YI  IH S   LL +IN+ILD S+IEAG+  +      L D++    ++   
Sbjct: 336 ----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQ 391

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +A EK +E+  +ID  +  V + D   + Q+I+NL++NAVKFT   G + V V  T    
Sbjct: 392 KAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQ-GEITVHVTRTPHSD 450

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S++D G G++  +   + ++F Q   +      G GLGL I + ++   GG  
Sbjct: 451 QKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSI 510

Query: 457 LIRSKLREGVEVIA 470
            + S L +G E   
Sbjct: 511 QVESILGQGSEFTF 524


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +         + +  AE  N AKS FLA+MSHE+RTP+N ++G +E++   T+    +
Sbjct: 35  VTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL----D 90

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S + LL +IN+ILD S+IEAG+ ++     +L   V + +  + LRA 
Sbjct: 91  AEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAH 150

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           +K +E+   + P +   +  D   +RQV++N+L NA+KFT   G V + +          
Sbjct: 151 DKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTER-GEVVLRIRQEVASNGKP 209

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++++ D G GI   ++ ++  +F Q   +      G GLGL I   ++   GG   + 
Sbjct: 210 LLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVE 269

Query: 460 SKLREGVEVIAI 471
           S   +G      
Sbjct: 270 STPGQGSVFHFT 281


>gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72]
 gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72]
          Length = 852

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 13/333 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                     + + F   V       +       I     +      F + +     S  
Sbjct: 528 TAFGLTFSTLIMVFFVVAVAIWLASMLTRRITDLIGGLNRIEAGDFGFRFRSE----SKD 583

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++       +++   +  +    ++ R++AE+ +  KS F+ASMSHELRTPLN ILGF+E
Sbjct: 584 ELGRLSDSLNNMADSVSESFQRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAE 643

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +I  +      N+  +++   I++SG+HLL+L+N++LD+++IEAG   L   A  L  ++
Sbjct: 644 LIRDDA----PNDEVRDHADTIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALL 699

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           ++   +    AQ+K +    +  P L  ++  D   +RQVI NLL+NA+KFT   G V +
Sbjct: 700 QQVANLHGTMAQQKGLAFATEFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPA-GEVKL 758

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +  T      + ++D GPGIA    P +   F Q S  I     G GLGL + + ++A 
Sbjct: 759 -LARTEADRLIVGVRDTGPGIAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVAL 817

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            GG   + S   EG      +P   V    P +
Sbjct: 818 MGGAVRLESAPGEGAYFEFWIPL--VSPAAPTE 848


>gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
 gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
          Length = 587

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++    +  FLA++SHEL+TP+ +I GFSE +     G ++N+ + E ++  I +  +
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI ++LDLS+IE   ++LS   + +  ++ +  ++L  +A EK I +       + 
Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV- 468

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI++ EIP 
Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + ++  H G   + S++ EG     +LP +
Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583


>gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 717

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/392 (31%), Positives = 191/392 (48%), Gaps = 22/392 (5%)

Query: 111 LVGQIAIGLCWTLLTLVEPGT------WTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            V        W  L +   G           +      A  ++A  + A     +   + 
Sbjct: 322 AVPVHLAAGIWGTLAVALFGDVSLFPNGHSRFDQFLVQAQGVLAAGVFAFGVAFVVLTIV 381

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
             F  + V+   + I    V   + + +L    +     +   F   V  +    E  ++
Sbjct: 382 NRFLSLRVSADAERIGLNVVEHGASSALLDVLGAMEAQASRGDFSKPVH-VEPFTEAGEM 440

Query: 225 IAEL--------------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                             E   +   + R  AE  N +KS+FLA+MSHELRTPLNAI+GF
Sbjct: 441 ATRYNLVLDKFNSEVRKREQTANDLRDARDVAELANASKSQFLANMSHELRTPLNAIIGF 500

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           SEV+  E  GP+ NE YK+Y+GDIH+S  HLL+LIN+ILDLS+IEA RYEL E  + ++D
Sbjct: 501 SEVMNGELFGPIENERYKDYVGDIHKSSSHLLSLINDILDLSKIEADRYELYEEELDVMD 560

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +V  C  M++ RA E  + +   ++  L  + AD++ +RQ++LNL+SNAVKFT  GG + 
Sbjct: 561 VVASCERMMRHRADEAGVALKVTVEDELPLLMADKRALRQIVLNLVSNAVKFTPKGGLIQ 620

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ-GSIAIKSAEQGVGLGLPIAQSIM 449
           +             + D G G+++ +IP  L  F Q G  +   + +G GLGLP+ +++ 
Sbjct: 621 LGAFMEPDGRMAFRVADTGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLGLPLTRALA 680

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             HG   +I S+  EG  +   +P +RVL   
Sbjct: 681 RLHGASLVIESEPGEGTTITIRMPYSRVLQTA 712


>gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
 gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
          Length = 1749

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 198/469 (42%), Gaps = 13/469 (2%)

Query: 18   PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-PIFPMWS 76
            PT  HL      +  F  E      ++      +        A+              W+
Sbjct: 1288 PTHRHLTEAGGLEALFAEEDEDSFPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWN 1347

Query: 77   LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ-IAIGLCWTLLTL----VEPGT 131
                 + +      + V +  +   E+   +  +     I       +L L    V    
Sbjct: 1348 GGQGLMISIVPRAAEAVASGSVSSTELQAAQTQIAELDTILETATDGVLVLDRNGVIIKA 1407

Query: 132  WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                      +   +I + +                  +V       +      ++    
Sbjct: 1408 NRSAEALFNANRADMIGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDG--REVLGLL 1465

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                 +  F  I                     I + + A+    + +++AE  N  KS 
Sbjct: 1466 KSGGLIPLFMTIGRINHDGED---RKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSD 1522

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA +SHE+RTPLNAI+GFSEV+  E  G + NE YKEY+ DI  SG H+++LIN++LDL
Sbjct: 1523 FLAKISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDL 1582

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
            S+IEAG+ +L  +A+S+ DIV EC+ ++Q +A  + + I   +  S+ +V AD + +RQ+
Sbjct: 1583 SKIEAGKLDLQFTAVSIKDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQI 1642

Query: 372  ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +LNLLSNA+KF   GG+  V+  +       + ++D G G++  ++   L  F Q   A 
Sbjct: 1643 VLNLLSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLHTAR 1702

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              +  G GLGLP+ ++++  +   F I S   +G  V    P  RVL  
Sbjct: 1703 HGS--GTGLGLPLTKALVEANRASFRIDSTPDQGTLVEISFPTQRVLAE 1749


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 8/265 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L+   E A + + + ++ AE  N AK+ FLA+MSHE+RTP+N ++G + ++    +   
Sbjct: 332 RLLDNRETAMATARQAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQL--- 388

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + +   I  S + LL +IN+ILD S++EAG+ +L  +   L+ +V   + +L  R
Sbjct: 389 -DPEQRHFATTIRDSAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPR 447

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398
           A  K IEI   +DP L   V  D   +RQ+++NL  NA+KFT+ GG    V         
Sbjct: 448 AHAKGIEIASMVDPDLPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGA 507

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI +  I  + + F Q   +      G GLGL I++ +    GG   +
Sbjct: 508 GRLRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGV 567

Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483
            S    G      LP   V    P+
Sbjct: 568 ESTPGAGSLFWFSLPFQMVETAPPQ 592


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           ++    +    I     +  + +  +E+     D  RK A E +  KS FLA+MSHE+RT
Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+GF+E++    +        ++++  I +S + LL +IN+ILD S+IEAG+  L 
Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILD 361

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                L DIV E ++ML   A  KN+++     +    ++  D   ++QVI NL++NA+K
Sbjct: 362 RIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421

Query: 382 FTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           FT   G V +                 +SI D+G G++  +  ++  +F Q   +     
Sbjct: 422 FTQT-GEVVLRASLEEEDKESNRITLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I++ ++   GG+  + S+L +G      L
Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 895

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 141/292 (48%), Gaps = 15/292 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +    F     +L   AE     +ELE      +E  ++ E+ N AKS FLA+MSHE
Sbjct: 328 LGVMVRSYFHLKDALLRKNAELSAYHSELEQK---VEERTRKLEKANQAKSEFLANMSHE 384

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N +LG +E++    +G   N   ++Y   IH S   LL +IN+ILD S+IEAG+ 
Sbjct: 385 IRTPMNGVLGMTELL----LGTELNTRQQQYTRTIHNSALSLLGIINDILDYSKIEAGKL 440

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           EL     +L  +V +C  +  L+  +K I++  +I P     +  D   +RQ+++NL  N
Sbjct: 441 ELESVPFNLEILVDDCTAIFSLKCAQKPIQLTSRIAPGTPIDLVGDPTRLRQILINLTGN 500

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A KFT   G + + + +            SI+D+G G++E +I  +  SF Q   +    
Sbjct: 501 AFKFTEK-GEICIGIEFLEDHSKQVRLKFSIRDSGIGLSEEQIGKLFQSFSQADTSTTRK 559

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             G GLGL I + +     G+  + S+L  G            +   P+ + 
Sbjct: 560 YGGTGLGLAICKQLAELMEGEIGVDSRLGHGATFWFT--AWLGVEASPKADP 609


>gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 574

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 141/261 (54%), Gaps = 9/261 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + LI  +        + ++ AE  + AKS+FLA++SHELRTPLNA++G S++++ + +  
Sbjct: 311 NRLIERVSERTRQLQQAKELAEAASKAKSQFLANVSHELRTPLNAVIGLSQLLKDDAVDI 370

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +  +   +  I+ +G+HLL LIN+ILD+S+IEAG+  L      +I ++   ++ ++ 
Sbjct: 371 GASPDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLYPETFDIITLINNVVLTVKP 430

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
             ++    +  + D  L +++AD+  MRQV+LNLLSNA KFT   G+V +TV        
Sbjct: 431 AIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKFT-TNGKVTLTVKIDKTIIL 489

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ DNG G++  +   +   F QG I+      G GLGL I++      G
Sbjct: 490 KEAPFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKYGGTGLGLAISRHFCQMMG 549

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G+ L+ S+L  G      LP 
Sbjct: 550 GEILVNSQLGVGSNFKVSLPL 570


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 8/274 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + + A+    + +K AE  N+AKS+F+A+MSHE+RTP+N ++G + ++    +   
Sbjct: 429 RDITDRKKAEEALRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDTDL--- 485

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  +E+   I  S  +LL +IN+ILD S+IEA + EL      L   + +   +L ++
Sbjct: 486 -DERQREFAETIQSSAANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDLLAIK 544

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSG 398
           AQ KN+E    +DP + S+   D   +RQ+I+N+ +NA+KFT  G  V   VG       
Sbjct: 545 AQAKNLEFVCMVDPDVPSLLVGDPGRLRQLIINICNNAIKFTREGEVVVRVVGEEIKEDK 604

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +I D G GI E +   +   F Q   +      G GLGL I + ++    G+  +
Sbjct: 605 AYLRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNGEIGV 664

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            S+  EG      LP  R           S Q +
Sbjct: 665 SSRPGEGATFWFSLPFQRQRQSREPLATASIQGR 698


>gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1082

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/256 (36%), Positives = 148/256 (57%), Gaps = 10/256 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    + +++A+  N AKS FLASMSHELRTPLNAILGF++V++       
Sbjct: 576 RDITERKQAEEALKQAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQR---DHS 632

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
               +++ +  I RSG+HLL LIN+IL++++IEAGR   +++   L  ++     ML L+
Sbjct: 633 LKGEHRQNLDIIGRSGEHLLELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLK 692

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400
           A+EKN+++  + +P L   +  DE  +RQV++NLL NA+KFT  GG +  +    ++ + 
Sbjct: 693 AEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTNHSTDQN 752

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   I+D GPGIA  E+  +  +FGQ      S  +G GLGLPI++  +   GG+ 
Sbjct: 753 PTIILTFEIEDTGPGIAAEEVNQLFEAFGQTETGRNSN-EGTGLGLPISRKFVELMGGEI 811

Query: 457 LIRSKLREGVEVIAIL 472
            + S L  G      +
Sbjct: 812 TVSSILGRGSLFTFTI 827


>gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1200

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 13/322 (4%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           + + L  Q+ +++ +    +                     +  IL+  A       E +
Sbjct: 570 LFLPLGIQSFLAVPIFAGGICWGFIGFDDCSR--ERRWTDYDKTILAAMAAGIGEFIERK 627

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +     TR +A E +  KS F+A+MSHE+RTP+NAI+G +E++    +    +   ++
Sbjct: 628 RVQDELARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDL----DAQQRD 683

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +   +  S + LL +IN+ILD S++EAG+  + E+   L+D V     ML + A+++ + 
Sbjct: 684 FAVIVRESAEGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKRGLA 743

Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YI 403
           +   IDP++ +V   DE  +RQV+LNL  NAVKFT  GG V + +      G        
Sbjct: 744 LSTFIDPAIPAVLRGDEGRLRQVLLNLGGNAVKFTEQGG-VTILITPDDPPGVSLLRLRF 802

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G++      +   F Q   +      G GLGL I++ I+   GG+  + S+  
Sbjct: 803 EVIDTGIGLSPVARQRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESEFG 862

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
            G      +P T V    P  +
Sbjct: 863 RGSTFWFTVPFTAVAKPAPPPD 884


>gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 692

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +         +  AE+ N AKS+FLA MSHE+RTPLN+ILG  ++      G L +
Sbjct: 304 ISARKKRIKDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDI----FHGSLLS 359

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  +  S Q LL +I+++LD+SRIEAG + L+E  I L+  +   I  L  RA+
Sbjct: 360 EEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAK 419

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K I +      ++   V+AD   + QVI NL+ NA+KFT   G V V +         I
Sbjct: 420 DKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNH-GHVAVKIEKLPNNSISI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   +  +   F Q   +I     G GLGL I + ++    G   + S+L 
Sbjct: 479 SVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLN 538

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP   + +   + N+E  +
Sbjct: 539 VGSTFKITLPLKEIRDLPKQLNNEDKK 565


>gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
 gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +K  L   +        +    A+  N AKS FLA+MSHELRTPL  ++G S  + 
Sbjct: 223 QLQQQKYTLERRVTERTQALHDALLAAQSANRAKSEFLATMSHELRTPLTCVIGISATLL 282

Query: 276 LET-----MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
                   +  ++ E  +EY+  IH SG+HLL LIN+IL+LS +EAG+  L  S  SL  
Sbjct: 283 RLYSNGAGIKQISREKQQEYLHKIHDSGEHLLELINDILELSEVEAGKTILQISEFSLTK 342

Query: 331 IVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           + ++ +   + RAQE N+ +   I   P      AD++ + +V+ NLLSNA+KFT   G+
Sbjct: 343 LAQKTLYSFRERAQEHNVLLISDIQVKPDEDLFIADQRRVEKVLFNLLSNAIKFTPESGQ 402

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + VG  +       I+D G GI+E + P +   F Q   + +    G GLGL + + +
Sbjct: 403 VTLRVG-VNKNTAIFQIQDTGIGISEEQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQL 461

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +  HGG   + S    G      +P     +   +   + + +K 
Sbjct: 462 VELHGGVIKLTSTENVGSTFTVHIPIQPTPSPNSQQQVKDSAFKT 506


>gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 579

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + E   E++  I +  + L +L
Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +L+ +A EK I +   +      V  D
Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL++NA+ +T  GG V + V       Q I + D+G GI + EIP +   F
Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  + S+L  G      L
Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTL 571


>gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
 gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
          Length = 1029

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 8/264 (3%)

Query: 210  SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             ++  +   A+  +L+      K+     ++RAEE +  KS FLA+MSHE+RTPL  ILG
Sbjct: 765  QHIGYIGLMADVTELVEAERQLKA----AKERAEEASRLKSAFLANMSHEIRTPLTGILG 820

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            F+E++  E +     E  +E+   I RS + LL L+N+ILDLS+IEA R EL      ++
Sbjct: 821  FAELL-DEELETRQQEDLREFTHIIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVV 879

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            D+ R+ + ++Q  A+EK +++    + +L +  AD   + QV++NLLSNA+KFT   G V
Sbjct: 880  DVARQAVQLMQPLAEEKGLKLELHAEENL-TARADPNRLHQVLVNLLSNAIKFTDE-GHV 937

Query: 390  HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             V +G        ++++D G GI+   +P +   F Q    +    QGVGLGL I + ++
Sbjct: 938  RVELGQ-KKGWVLLAVEDTGCGISPEFLPHLFEPFRQEHEGLTQKHQGVGLGLAIVKRLI 996

Query: 450  ANHGGQFLIRSKLREGVEVIAILP 473
                GQ  ++S++  G     +LP
Sbjct: 997  DLMSGQITVQSEVGRGTRFEILLP 1020


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 28/305 (9%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS----LSDETRKRAEEENLAKSRFLASMSHELRT 262
           L ++ + I   +     L+   +             +  AE  N AKS+FLA+MSHE+RT
Sbjct: 244 LQRAALNIGQLKDSMISLLKTRQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRT 303

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NA++G + ++    +        ++++  I  SG  LL LIN+ILD S+IEAG+ +L 
Sbjct: 304 PMNAVIGMTGLLLNTPL----EAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLE 359

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +    +   + E ++++  +A EKN+E+ +    P+ +++  D   +RQV++NLL+NA+K
Sbjct: 360 QQPFEIRTCIEEALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALK 419

Query: 382 FTAIGGRVH-VTVGWTSGR-----------------GQYISIKDNGPGIAEGEIPTVLTS 423
           FT  G  V  V+      +                      +KD G GI   ++  +  S
Sbjct: 420 FTGEGEVVVYVSSKPIESKDLDAESDLEVIAEATPYEIQFDVKDTGIGIPPDKLERLFKS 479

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIP 482
           F Q   +      G GLGL I++ +    GG+  + S++  G      +  + + N   P
Sbjct: 480 FSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVSVGSTFSFTITASEIPNYVSP 539

Query: 483 EDNHE 487
           +   +
Sbjct: 540 KAASD 544


>gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 900

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 174/452 (38%), Gaps = 28/452 (6%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL------AVYAANLSLGKKV 93
           L+             + +    I  +F +      +    L      A    +L      
Sbjct: 187 LYANRRRERGFF--FYAVANLGIALYFVRMASPLAFLPPVLSYSVSKAGLIVSLGYLLVF 244

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
                 +      + ++L+    +G    L+             ++      L++  + +
Sbjct: 245 YFEFFSLRASDRLKRYVLILVWVVGGHMALVPRTLQDAERVFAASLVVGFAFLVSYVVIS 304

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQA-------IMSMHVLDISLAGMLATALSF-FTYITY 205
           +  F                L           +M            +    +  F  +  
Sbjct: 305 IVIFRHGAREGGFLLIGTGLLVLLGGHDIVYKVMGREPFVWLQGIGIFVFEAMIFITLAS 364

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              +   ++         +  E+        E  +  E+ N AKS FLA++SHE+RTPL+
Sbjct: 365 RTMRVYARLEEYST---GIEEEVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLH 421

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GF+E ++    G  +    + ++  +    Q L  LI+EILD+ ++E G+  L ES 
Sbjct: 422 AIMGFAEALK----GEQDPREREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESP 477

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V     +++  A+ K +    +I+  +   V  D   ++QV++NL+ NAVKFT 
Sbjct: 478 FNLHEVVGYVCRVMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTE 537

Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            GG V V VG           + ++D G GI E     V  SF QG  +      G GLG
Sbjct: 538 EGG-VRVRVGCVEEGEGRWIEVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLG 596

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + IA+ ++   GG   + S++ +G  V   +P
Sbjct: 597 MTIARELVRLMGGDIGLESEVGKGTRVWFRIP 628


>gi|283782020|ref|YP_003372775.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440473|gb|ADB18915.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 926

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 182/468 (38%), Gaps = 57/468 (12%)

Query: 49  SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108
             I  L  +       W        +     L +  A+  L +     D+          
Sbjct: 271 GIIAGLVAICATCNVAWDFGAVFIGI--SAGLIMELASDILERYFKLDDVVNA------- 321

Query: 109 WLLVGQIAIGLCWTLL--TLVEPGTWTPEYLTIYKSATL-LIALSISALSNFMLPYAVFL 165
              +    +   W  L    + P  + P+  +      + ++ +S+    +F + +    
Sbjct: 322 ---ISVHGVAGAWGTLLVAFITPPEFMPQGWSRLDLLLVQMLGISVCFCWSFGITWVALS 378

Query: 166 SF---FPVVVAL--------STQAIMSMHVLDISLAG-----------MLATALSFFTYI 203
                 P+ V +          +      + D+ +                   +    I
Sbjct: 379 ILKRYMPLRVTIEEEEAGLNVAEHDARTDLHDLLVTMEQNMRGDHTRRAAVDECTEAGMI 438

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKS--------------LSDETRKRAEEENLAK 249
                +        +AE       LE   S                +  R  AE  N  K
Sbjct: 439 AKQYNRVLEAREQSEAELRRYATMLEDTNSYVENQAVEMQFQAKALEAARSEAERANHTK 498

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+F+A+MSHE+RTP+ AILG+ +++  +      +E +K+ +  I  +GQHLL +IN+IL
Sbjct: 499 SQFVANMSHEIRTPMTAILGYVDMLLDDADAHPVSEKWKQPLATIKSNGQHLLEIINDIL 558

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D+S+IEAG+  +     S+  +V +   +L+ RA+ K + +  K +  +   + +D   +
Sbjct: 559 DISKIEAGKLTIEIIECSVPQLVGDVTNLLRHRAEGKGLALAVKFNSPIPETIHSDPTRI 618

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSF 424
           RQV+LNL+ N++KFT   G V V +             +S+ D+G G+ + +I  +   F
Sbjct: 619 RQVLLNLVGNSIKFTNH-GEVRVELEMFYDDPENPQLQLSVVDSGIGMDDEQIARLFQPF 677

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +      G GLGL I + +    GG   ++S++  G   I  +
Sbjct: 678 VQADSSTTRRFGGTGLGLTITKRLAEMLGGSITVKSQIGHGSSFIVRI 725


>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 903

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 26/367 (7%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
             T +    +LI ++ S L  F L  +V     P+   +     +    LD  ++G L  
Sbjct: 173 RDTFFAVIMVLIGIAFSTLFGFRLVKSV---IQPITDMVQAVHKIREGRLDTRVSGQLTG 229

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEENL 247
            L         + K+  +      +          + + ++E+     D  +KRA+E   
Sbjct: 230 ELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAAR 289

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+  +    + P    +  +Y+  I +S ++LL +IN+
Sbjct: 290 VKSEFLANMSHELRTPLNGVIGFTRQLLKTALTP----SQTDYMQTIEKSARNLLGIIND 345

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           ILD S++EAG+ +L     SL D + E + +L   A +K +E+  ++D  +   +  D  
Sbjct: 346 ILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPM 405

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI--KDNGPGIAEGEIPTVL 421
            ++QV+ NL  NA+KFT   G V V +  T   +G    +++  +D G GI+E +   + 
Sbjct: 406 RLQQVLTNLAGNAIKFTER-GNVDVHIEQTGGSNGNKVRLNVLIRDTGIGISEEQQRQLF 464

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   +I     G GLGL I Q ++   GGQ    S+L +G      L     ++  
Sbjct: 465 QAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSL----DMDVS 520

Query: 482 PEDNHES 488
           P    E 
Sbjct: 521 PLPQTEK 527


>gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 441

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 3/245 (1%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                   R++A+  + AKS FLA+MSHELRTPLNAI+G+SE++  E      + TY + 
Sbjct: 195 KTEELKILREQAQNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDDGLD-TYSDD 253

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+ SG+HLL LIN+ILDLS+IEAG+ EL      L   + +     +   ++   + 
Sbjct: 254 LSKINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPLVEKNGNKF 313

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +   ++  +  D+  +RQ++ N+LSNA KFT   G V + +  +       ++ D G 
Sbjct: 314 VIEKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKK-GTVTLAITKSGDD-IKFAVVDTGI 371

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+ EG++  V   F Q   +      G GLGLPI++ +    GG+  + S+  +G     
Sbjct: 372 GMNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEGKGTTFSI 431

Query: 471 ILPNT 475
            +P  
Sbjct: 432 TIPIE 436


>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
 gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
          Length = 692

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +         +  AE+ N AKS+FLA MSHE+RTPLN+ILG  +V     +    +
Sbjct: 304 ISARKKRIRDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHSSLL----S 359

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  +  S Q LL +I+++LD+SRIEAG + L+E  I L+  +   I  L  RA+
Sbjct: 360 EEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAK 419

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K I +      ++   V+AD   + QVI NL+ NA+KFT   G V V +         I
Sbjct: 420 DKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNH-GHVAVKIEKLPNNSISI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   +  +   F Q   +I     G GLGL I + ++    G   + S+L 
Sbjct: 479 SVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLN 538

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP   + +   + N+E+ +
Sbjct: 539 IGSTFKITLPLKEISDLPKQLNNEAKE 565


>gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.]
          Length = 701

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 150/269 (55%), Gaps = 6/269 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + + N  +     E +  +A+     +     ++RAE  +  K  FLA+MSHELRTPL
Sbjct: 432 EQISRLNNDLRRHAKELEQRVAD---RTAELVIAKERAESADRIKPAFLATMSHELRTPL 488

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+I+GF+ ++  E  GPL NE  ++ +  +  S +HLL+LIN++LD+S+IEAG+ ELS +
Sbjct: 489 NSIIGFTGIMLQELAGPL-NEEQRKQLTMVQSSSRHLLSLINDVLDISKIEAGQLELSVT 547

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +  L   + + + ++   A++K +++   I   +++   D++ + QV+LNLL+NAVKFT 
Sbjct: 548 SFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINTAATDQRRLEQVVLNLLNNAVKFTE 607

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G VH++    + +   +S+ D G GI   E+  +   F Q    +    +G GLGL I
Sbjct: 608 K-GYVHISCRIENDKYL-LSVSDTGTGIRPEELSGLFQPFHQIDTGLTRKYEGTGLGLSI 665

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + ++   GG   ++S+  +G   I   P
Sbjct: 666 CKRLLDMMGGTIDVQSQWGKGSTFIVRFP 694


>gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 917

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +   +  +  AE  N AKSRFLASMSHELRTPLNAI+G+SE++  E     + 
Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  I  +G+HLL+LIN+ILDLS+IEA + E+     S+ D++R+    +     
Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
               E  Q  +  L  + +D+  +RQ + NLLSNA KFT  GGRV + V           
Sbjct: 516 RNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRADRDWL 574

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G++  +   +  +F Q   +      G GLGL I +S     GG   + S+
Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634

Query: 462 LREGVEVIAILPN--TRVLNFIPED 484
           + +G      +P    R  +  P +
Sbjct: 635 VGKGSVFTMEVPAQCEREADGSPAE 659


>gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 599

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/474 (24%), Positives = 181/474 (38%), Gaps = 46/474 (9%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L     G W    P  P+W    L+ YA   +    ++N  I+   +Y  +   LV    
Sbjct: 129 LTYTAGGLWVLTGPHGPLWYASVLSAYAMVFAGTVLMINQAIRSQSLYRAQAISLVVGAL 188

Query: 117 IGLCWTLLTLVE----PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF---FP 169
             L W    L      P  +       +    L   +++       L  A         P
Sbjct: 189 --LPWAASMLFVTGLSPIPFVDPTPVAFALGGLAFTVAMQRYRALDLLPAARERIVDQMP 246

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--------- 220
             + +       + +   + A + AT       +        ++ +  + E         
Sbjct: 247 DAIIVLDMHDRIIDLNPAAQAILSATTDVLGKSLARVAPPWLIEQVRDRYEGQFEVQQTG 306

Query: 221 --------------------------KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                                         I   + A     E ++ AE  + AKS FL+
Sbjct: 307 ETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQEAKEAAEAASQAKSAFLS 366

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSHELRTPL AILG+SE +  + +    +    + +  I  +G+HLL LIN+ILD +R+
Sbjct: 367 MMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD-LDRIITAGRHLLTLINDILDYARL 425

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EA    +    + +  ++ E ++ LQ  A++    I   ++P L  V AD   +RQV+LN
Sbjct: 426 EANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLN 485

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA KFT   G + V    ++     I + D G GIA  ++  +   F Q        
Sbjct: 486 LVGNACKFTGQ-GEIRVHCYRSTTAEIQIDVSDTGIGIAADQLQHLFKPFVQVDNGPTRR 544

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             G GLGL I Q +    GG  L+ S+   G      LP T V +   E + E 
Sbjct: 545 YGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLPITGVPSAPCEVSQED 598


>gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 606

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 3/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++ +  +  F+A++SHELRTPL +I  +SE +    +   + ET   ++  I+     + 
Sbjct: 365 QKLDNMRREFVANVSHELRTPLTSIKSYSETLMDGAL--EDKETAYRFLNVINSEADRMT 422

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E  + + +        +VR  +  ++L A+EK   I          V+
Sbjct: 423 RLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVIECFSIGDKPEVY 482

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD+  + QV+LN+L+NA+K+T   G++ V +G       Y+ + D+G GI E +I  V  
Sbjct: 483 ADKDRIEQVVLNVLTNAIKYTPDKGKITVYIGKMYSD-AYVKVVDSGIGIPEEDIKRVFE 541

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A      G GLGL IA+ I+  H G   I S+L +G EVI  LP
Sbjct: 542 RFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVRLP 592


>gi|307822954|ref|ZP_07653184.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735729|gb|EFO06576.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1247

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 132/312 (42%), Gaps = 23/312 (7%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L  FT       +S + +L    E   L      A +  +  R  A +    K+ F
Sbjct: 477 ILGVLFVFTDAYPVQNESRIAMLKEVGEMMALALLQNQANASLEAARDAALQVAHTKTEF 536

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+N +LG  ++++   +    +    + I     S + LL +IN+ILD S
Sbjct: 537 LANMSHEIRTPMNGVLGMLDLLQDTQL----SREQWDLIDIAANSAESLLTIINDILDFS 592

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371
           ++EAG+ EL +   +L D+V E   +L  RA  K +E+   +   L   W  D   +RQV
Sbjct: 593 KLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQV 652

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-----------------YISIKDNGPGIA 413
           + NL+ NAVKFT  G   V V V                            + D G GI 
Sbjct: 653 LTNLIGNAVKFTEQGEVSVTVRVSKKDDTDAASAPGRFAADTPSLTILRFEVVDTGIGIT 712

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +  +F Q   +      G GLGL I++ ++    G   + S L +G      LP
Sbjct: 713 AEAQARLFQAFSQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGVESALGQGANFWFTLP 772

Query: 474 NTRVLNFIPEDN 485
              V N  P   
Sbjct: 773 LAAVDNEAPAPQ 784


>gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR
 gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis]
 gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 579

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + E   E++  I +  + L +L
Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +L+ +A EK I +   +      V  D
Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL++NA+ +T  GG V + V       Q I + D+G GI + EIP +   F
Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  + S+L  G      L
Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTL 571


>gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 587

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    +S F+A++SHELRTPL +I GF E +    M   + E  + ++  I+     L  
Sbjct: 359 ELEKMRSEFVANVSHELRTPLTSIKGFVETLLDGAM--EDREVARRFLEIINVETNRLSR 416

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+IL LS IEA   E+S S ++  +IV + + +L   A+EKNI +   I P L  + A
Sbjct: 417 LINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMA 476

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +E  ++QV++NL+ NA+K+T   GRV ++    SG G  +S+KD G GI    +  +   
Sbjct: 477 NEDLIKQVLINLVDNAIKYTPENGRVVLSATP-SGGGLKVSVKDTGIGIPPESMSRLFER 535

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL I +  +  HGG   + S++  G +    LP 
Sbjct: 536 FYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFTFYLPA 586


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S+IEAG+ ++     SL D++     ++ L+AQ
Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + ++        Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 MLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 11/262 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R+ A E +  KS+FLA+MSHE+RTP+N +LG ++++   ++        +EY   
Sbjct: 399 ELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRLSLEAKP----REYAQT 454

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+RS +HLL++IN+ILD S+IEAG   L      L   +   + M+   A+EK +E+   
Sbjct: 455 IYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNVL 514

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNG 409
           I+ S+   +  D   ++Q++LNL++NA+KFT   G+V V V   S    R    S++D+G
Sbjct: 515 IESSVPRQLQGDPGRLKQILLNLVNNAIKFTDR-GQVLVRVSLKSSTVDRKLIFSVRDSG 573

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI+      +  SF Q   +      G GLGL I + ++   GG+  +R+ + +G    
Sbjct: 574 IGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNFW 633

Query: 470 AILPNTRVLNFIPEDNHESTQY 491
             +P    +   P +    +Q 
Sbjct: 634 FTIPLQ--MQPQPVERSRGSQI 653


>gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
 gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
          Length = 937

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I RS  +LL++IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLST----SQTDYLQTIERSANNLLSIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   S     +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100]
 gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 713

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/419 (22%), Positives = 171/419 (40%), Gaps = 24/419 (5%)

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-----IGEVYVWRIWLLVGQIA 116
           +  W T        +        A + +   +   ++            W +     +  
Sbjct: 146 LFGWSTLITTVGDLTGAIFLTIPALILISPWLRKRNLSLFAVKPLPPTHWEVVTRKEKAL 205

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
             +    + ++      P+   +Y    LL A      +  ++   V   F  +++    
Sbjct: 206 FAVVLGGMLVLALSFHIPQTWYVYGILMLLSAAWYGMYAALVVNTWV--VFLNIILPKIA 263

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               S   L++     L T           +     KI      +  L +          
Sbjct: 264 NLPWSNSFLEVQTPATLLTLCFCSLITGSAVTSLTGKIRELNETQGQLKS---------- 313

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             + +AEE + AKS FLA MSHE+RTPLN++LG  E++    +    ++  + Y+     
Sbjct: 314 -AKDQAEEASRAKSEFLARMSHEIRTPLNSVLGMLELLRETQL----SKDQERYLTLFSH 368

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +G++L  LIN++LD S+IEA    +   + ++   VR    +LQ++A+E+ +     I  
Sbjct: 369 AGENLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAEEQGLHFELHISK 428

Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAE 414
            +  + W D   +RQV+ NL+ NA+KFT  G  +V + +   +     I ++D G GI  
Sbjct: 429 DVPPLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLLIEVQDTGIGIPR 488

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                + +SF QG   I     G GLGL I+++++   GG   ++S    G     +LP
Sbjct: 489 ERQSKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLAGRGTTFKILLP 547


>gi|167766413|ref|ZP_02438466.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
 gi|167711822|gb|EDS22401.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
          Length = 804

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 25/389 (6%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI------------SALSNFM 158
           ++  + +G+      L+     +  Y   Y   T++I L +              + +F 
Sbjct: 53  VILGLNLGIAVLSFVLLFYAYKSGRYQFCYVVTTIMIFLMMFPYLFFKSGGYKGGMVSFY 112

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNV 212
           +   +F  F      +   A M M V   ++            + +        L     
Sbjct: 113 IFGILFTVFMLEGKVMFFTAFMEMVVYIATIMIAYQNPQMVVWFSSEKEVVMDLLIGFCA 172

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +S  A            + + +E R  A+  N AKS FLA+M HE+RTP+N +LG +E
Sbjct: 173 SSISVAAVMYLHFRMYNKQQEILEEARIEAQSANKAKSAFLANMGHEIRTPINVMLGMNE 232

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +I  E+     +E  ++Y   I RSG +L++LIN ILD+SRIE+G+ E+ E    L  ++
Sbjct: 233 MILRES----ESEEIRQYAKSIERSGGYLISLINNILDISRIESGKMEIEEGKYELRQLL 288

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E +++ + +A++K++++    D +L   +  D   ++Q++LNL++NAVK+T   G++ +
Sbjct: 289 DEVMLIAEKQAEQKSLKMNLIFDKTLPAYLIGDVIHIKQILLNLINNAVKYTKE-GQIDI 347

Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            V            +KD G GI E  +P +  +F +         +G GLGL IA+ ++ 
Sbjct: 348 KVSKNEEETKLIFEVKDTGIGIKEENLPVLFDAFMRVDSKKNKKIKGTGLGLAIAKQLVE 407

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             GG   + S   +G      LP  +V +
Sbjct: 408 QMGGMIWVESVYGKGSSFFVQLPMKKVSD 436


>gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 903

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 12/334 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L ++    L+     +       P+  +    + +     +D          +       
Sbjct: 289 LFSIIGILLACITAYFLASRIMLPINTITEVFKKLAKGEDVDAIPGITQQNEIGQLANAA 348

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               + N +      E   L +E E   +   E + +AE+  ++KS FLA+MSHE+RTP+
Sbjct: 349 DVFHEKNKQTTVLLLEAQRLNSEQETLNAELVEAKHKAEQATVSKSMFLANMSHEIRTPM 408

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+G  +V+    +      T ++++  +  S Q L++LIN+ILD S++EAG+ ++ + 
Sbjct: 409 NGIIGLLDVVMKSELTS----TQRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQV 464

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
             SL  +    +  +  RAQEKN+ +    DP++  +   D   + QV+LNL SNAVKFT
Sbjct: 465 EFSLNSVFANLLTNISARAQEKNLNVRFICDPNIPPILIGDPLRISQVLLNLSSNAVKFT 524

Query: 384 AIGGRVHVTVGWT---SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
              G V ++V +    +     +   ++D G G+++ ++  V  SF Q   +      G 
Sbjct: 525 -RNGSVTISVTYDIIPNSNKLLLRARVQDTGIGMSKEQLDKVFESFTQADGSTSRDFGGT 583

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL I + ++   GG+    SK+  G       
Sbjct: 584 GLGLTIVKQLVKLMGGKVTAESKVNVGSTFEVSF 617


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 137/272 (50%), Gaps = 14/272 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ ++      ++ ++ AE+ N+AK  FLA+MSHE+RTP+NAI+G + +     +    +
Sbjct: 184 ISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQL----S 239

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K YI  I  S Q LL +IN+ILD S+I+AG+  +      L D++     M   +A 
Sbjct: 240 EKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYKAY 299

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K++E    +  ++   ++ D   + QV++NL+SNA+KFT   G ++V V          
Sbjct: 300 DKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNAIKFT-EDGEINVAVTLLDKNTDKV 358

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G G+ E +   +  +F Q   +      G GLGL I++ ++   GG   + 
Sbjct: 359 WLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAISRRLIQLMGGDIGVT 418

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           S + +G      L     L   PE +    QY
Sbjct: 419 SGVGQGSTFYIEL----TLPMQPEQDDSHHQY 446


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +++I  L+     +   ++ AE  + AKS F+A+MSHE+RTP+N I+G +++     +  
Sbjct: 1320 NEMIHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTA 1379

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +EY+  +  S   LL +IN+ILD S+IEAGR EL ++  SL   + + +  L  
Sbjct: 1380 ----EQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSW 1435

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
            RA +K IE+   I   +  S+  D   +RQ++ NL+ NA+KFT+  G V + V       
Sbjct: 1436 RAHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQ-GEVDLVVKVEKSLS 1494

Query: 399  -RGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    S+ D G GI + ++  +  +F Q   +I     G GLGL I+  ++    G+
Sbjct: 1495 CGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGK 1554

Query: 456  FLIRSKLREGVEVIAI--LPNTR 476
              + SK  +G         P + 
Sbjct: 1555 LSVVSKSGKGSTFEFTAQFPTSP 1577


>gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 841

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 102/488 (20%), Positives = 181/488 (37%), Gaps = 70/488 (14%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           +Y S ++K+K        +            ++ +    +               V+ V 
Sbjct: 12  LYNSNRDKQKTTWRRRHASR---------SPEYGQSFTRV--------------IVVFVI 48

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
            +  + TQN       + T+A     +S+   +  +                G +A+G  
Sbjct: 49  CLYFYITQNH-----LIFTIAAAYLAVSIAFLIWITLSPAANNRR------RGLMAVGDV 97

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
            T    +  G      L +     +++         +            V V       M
Sbjct: 98  VTTSVCMYHGDGEDGALFVGLYLWIIVGHGFRFGVKYAYLAMALSVAGFVTVVYLNPFWM 157

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
               + I    ++     F   +   L                                 
Sbjct: 158 QHIYMAIGNLLLILVVPLFMARLIQKLH----------------------------HAID 189

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  N AKS+F+A+MSHELRTPLN I+G S+++   ++        K +   I  S  H
Sbjct: 190 AAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYSTSLSN----EQKRFTFVIKESAYH 245

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+LI  ILD++++EAG+ EL      L  ++   + + + +A+EK I I  + DP +  
Sbjct: 246 QLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIALRYDPEIPF 305

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGE 416
           ++  D K ++Q++LN++ NAVKFT  G   + V     + +      ++ D G G++E  
Sbjct: 306 ALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVTDTGIGMSEDV 365

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   +I     G GLG  IA+++    GG   ++S+   G      LP +R
Sbjct: 366 QGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGTTFTINLPLSR 425

Query: 477 VLNFIPED 484
                 E 
Sbjct: 426 QQPGTSEP 433


>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
 gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
          Length = 1078

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 10/265 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             ++  A     I   + A    ++ R++AEE + AKS FLASMSHE+RTPLNAI G S+
Sbjct: 534 DRITHVAVVTRDITSYKDALRRLEDARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSD 593

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++ L  + P      +E +  I  S   LL LIN+ILDLSRIEAGR EL    +   D+V
Sbjct: 594 LLLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLV 649

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           R    M + +A+ K +    ++   L   V  D   +RQ+++NLLSNA+KFT  GG V +
Sbjct: 650 RHTWEMFRPQAETKGLSFELRLSEGLPPVVNGDPVRIRQILINLLSNALKFTEEGG-VTL 708

Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V     +       + ++D G GI   ++  +   F Q   +I     G GLGL I++ 
Sbjct: 709 SVTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQ 768

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +    GG  ++ S++  G   +  +
Sbjct: 769 LAEMMGGTIVVSSEVGRGSTFVCRI 793


>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 778

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 176/423 (41%), Gaps = 23/423 (5%)

Query: 88  SLGKKVMNSDIKIGEV----YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
            L  +   +              +I  +      G     L LVE  T   +   +    
Sbjct: 108 YLRDRSDTTPSIPQYTGGKVSPAKITFVREVRIEGELLGTL-LVEASTRAIQEQFLLSLL 166

Query: 144 TLLIALSISALSNFMLPYAV-FLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFF 200
             +I LS+  +    + Y +  L   P+         +S   +    A         S  
Sbjct: 167 NAIIMLSVGTIIAGFIGYGIQRLITRPLQELEGLATKVSRDRIYTRRATKRYEDEIGSLV 226

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
               + L     +    Q+   DL  E+           ++A+  N AKS FL++MSHEL
Sbjct: 227 ESFNFMLESVQTRDEEIQSNNRDLEMEVAARTIELRTAMEKAQSANKAKSEFLSTMSHEL 286

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G S ++  + +    ++  + YI  I  S   LL+LIN++LD S+IE+G  +
Sbjct: 287 RTPMNAIVGMSSLLMDKDL----DDERQSYIKIIRSSSDALLSLINDVLDYSKIESGHLD 342

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379
           L +   +L++ + E + ++    ++  I+    IDP L ++   D   +RQV++NLL NA
Sbjct: 343 LEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKLPAIVKGDVTRLRQVLINLLGNA 402

Query: 380 VKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           VKFT   G V +      VG +      I+I D G GI +     +  +F Q   ++   
Sbjct: 403 VKFTQK-GHVWLEAKCCVVGESENVFASIAIHDTGIGIPDDRKHRLFQTFSQVDSSMTRR 461

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN----TRVLNFIPEDNHESTQ 490
             G GLGL I+Q +    GG   + S++  G      +P        L   P  N ++  
Sbjct: 462 FGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIPLNCEENETLATYPSPNPDAVP 521

Query: 491 YKC 493
           +  
Sbjct: 522 FTA 524


>gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium
           meliloti 1021]
          Length = 917

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +   +  +  AE  N AKSRFLASMSHELRTPLNAI+G+SE++  E     + 
Sbjct: 397 ITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  I  +G+HLL+LIN+ILDLS+IEA + E+     S+ D++R+    +     
Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
               E  Q  +  L  + +D+  +RQ + NLLSNA KFT  GGRV + V           
Sbjct: 516 RNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRPDRDWL 574

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G++  +   +  +F Q   +      G GLGL I +S     GG   + S+
Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634

Query: 462 LREGVEVIAILPN--TRVLNFIPED 484
           + +G      +P    R  +  P +
Sbjct: 635 VGKGSVFTMEVPAQCEREADGSPAE 659


>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
          Length = 949

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +   A++   + ++ AE  N+AKS+FLA+MS E+RTP+N I GF E++EL  +     
Sbjct: 303 ITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLELTNLSS--- 359

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE+I +   + + LL++IN+ILDLS+IEA +  +   + +L D + + + +L  +A 
Sbjct: 360 -EQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLLAPKAA 418

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK +E++ +I   +   V  D   +RQ++ NL+ NAVKFT   G V +++ +     +  
Sbjct: 419 EKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEK-GYVSISMDYLEKDHEIA 477

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G GIA  +IP V  +F Q   +      G GLGLPI+  ++   GG   + 
Sbjct: 478 LVNFEVEDTGIGIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGDIRVE 537

Query: 460 SKLREGVEVIA 470
           SKL EG     
Sbjct: 538 SKLGEGSTFKF 548


>gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 639

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/331 (25%), Positives = 153/331 (46%), Gaps = 12/331 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           AL  ++      +    + +AL    I++  ++                     +   + 
Sbjct: 309 ALQAYVRNQTFAVGLIGLFIALIASYIINRGIIKPLEQLKQGAERVSNGRYDQKVVVDSD 368

Query: 213 KILSCQAEK-----DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPL 264
                 A+        +    E  K  ++E +      +E +  KS  +A +SHELRTPL
Sbjct: 369 DEFGELAKAFNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPL 428

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +I G+ E++   TMG + N++ K+ +     +   L  LI  +LDLS+IE G  E+   
Sbjct: 429 TSIKGYVELVLDGTMGAI-NDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYRE 487

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            ++L  IV + I  LQ  A EKNI++ ++I+    ++ AD+  + QV+ NL+ NA+KF+ 
Sbjct: 488 KVNLKGIVCDVIEYLQPIATEKNIKLKKEIEE--IAIDADKDRITQVLTNLIENAIKFSP 545

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
               + ++         ++ + D+G GI + ++  V   F Q   + K  + G GLGL +
Sbjct: 546 ANESIMISADL-EDEHVHLRVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAV 604

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +SI+  H G   + S+L +G     ILP +
Sbjct: 605 CKSIVEAHKGSIWVESELGKGSTFHIILPLS 635


>gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3]
 gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3]
          Length = 508

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 8/336 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-- 212
                   V      + +  +    +  +  D        T       + Y +   +   
Sbjct: 176 IALTDRITVLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQKLGAGELDYRIEDIDDDG 235

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++    +  + +  +L  A     + +  A+E N AKSRFLA++SHELRTPLNAI+G+SE
Sbjct: 236 ELGDLASAFNSMSDKLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSE 295

Query: 273 VIELETMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++  E     P++ + Y+  +  I  SG+ LL LI++ILDLS+IE G+  L +      +
Sbjct: 296 MLHDELDDETPIDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGE 355

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +   +  L    +     +      +L  +  D    RQ+I+NLLSNA KFTA  G + 
Sbjct: 356 ALTMAVDALAPLLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAE-GMIR 414

Query: 391 VTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           V+  +T + +   I++ D G G+   +   V  +F Q   A  +   G GLGL I +   
Sbjct: 415 VSASFTQATQHLEITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFC 474

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              GGQ  + S+  EG      LP        PE  
Sbjct: 475 ELMGGQISVASEPGEGSTFTVSLPVDP--ELTPEAA 508


>gi|329889991|ref|ZP_08268334.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845292|gb|EGF94856.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 595

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 175/431 (40%), Gaps = 20/431 (4%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           ++ +   +  L ++  A             +W + TLA  A    + K+V          
Sbjct: 16  AILQTHYLRYLIIVSWALGLIATVGLAHGLVWFVATLAAGALRGEVEKRVSQRAGS---- 71

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             W +       A    W +  L+   + +     +  +  +   + + A        A+
Sbjct: 72  -GWGLVFPAVATATTAVWAVAPLLAWFSSSMFGRELAIAFLMSGYVLVFAQLRNSPRQAI 130

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +S      A      +    +      +     +    +         +I + Q  +  
Sbjct: 131 LISSPYGAAAAIIAVNLLGDPVFWPFVALAPFTAASLFVLVTMTMLREERIRAFQEHQAH 190

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E        +  R +A+  N AKS FL  +SHELRTP+N +LG ++++    +    
Sbjct: 191 LIEE-------LEAARDKADAANEAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---- 239

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY+  I  SG +LL+L+N+ILD+++IEAGR       ++L D+ R  +   + +A
Sbjct: 240 EGAQREYLAIIRNSGDNLLSLLNDILDMTKIEAGRMNFEAVDVNLEDLHRRIVGPFEAQA 299

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           + K +    + +  +   V  D   + QV+ NLLSNAVKFT  G    VT G      + 
Sbjct: 300 EAKGLNFIAEFEGDVPAVVRGDPLRVCQVVQNLLSNAVKFTDQGAVRFVTRGRRVSERRV 359

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D+G GI++ ++  +   F Q   +      G GLGL I++ +    GG+  + 
Sbjct: 360 AFEFVVIDSGSGISDDDMDQLFQPFTQVDASSTRRFGGTGLGLTISRRLANIMGGEISVT 419

Query: 460 SKLREGVEVIA 470
           S L EG     
Sbjct: 420 SSLGEGSTFTF 430


>gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
          Length = 755

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 2/233 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+ F+A++SHELRTP+ +I G   ++     G L  E  +E +     +   L+ 
Sbjct: 264 ELDRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEA-RELLTIARNNTDRLIR 322

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ILD+SRIEAG+ E+  + +S  D+VR  +  +   A+++NI +   +   L+ V A
Sbjct: 323 LINDILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEGLARVMA 382

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+SNA+KF+  G  V +    T        + D GPGI   +   +   
Sbjct: 383 DADRLHQVLDNLISNAIKFSPQGSEVLIRARETGDG-VRFDVIDRGPGIPADQTGLIFER 441

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I ++I+  HGGQ  + S L EG      +P   
Sbjct: 442 FYRVDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIPVEP 494


>gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 776

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 8/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +V +    + R+ A     +KSRFLA+MSHE+RTPL+ ILG +E++E   +    +
Sbjct: 106 ITDQKVTEEHLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----D 161

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  I  SG+ LL LIN+ILD S+IEAG+  +      L ++V + + M+ L+A 
Sbjct: 162 EEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAH 221

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K++E+   I   +   V  D   +RQ+++NL +NAVKFT  G    RV +         
Sbjct: 222 KKHLEVVVDIGEEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAW 281

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI E +   +   F Q   +      G GLGL I++S++    G+  +RS
Sbjct: 282 VAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRS 341

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           K  EG     +LP   V ++ P
Sbjct: 342 KEGEGSSFWFLLPLPIVESYEP 363


>gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1390

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 13/298 (4%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +       VK+L+  A +  +        +   + ++ A+  N AKS FLA+MSHELRTP
Sbjct: 879  SRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLANMSHELRTP 938

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LNAILGF++++             +EY+  I +SG++LL+LINE+LDLS+IEAG   L+ 
Sbjct: 939  LNAILGFTQLLGQNYG---LTSQQQEYLQIIQQSGKYLLSLINEVLDLSKIEAGAVTLNP 995

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
            +  +LI +++    MLQ++A  KN+ +  ++   +   V  DE  +RQV++NLL NA+KF
Sbjct: 996  TNFNLITLLKRINTMLQIKASSKNLVMNIQLQQDIPDYVQTDESKLRQVLVNLLDNAIKF 1055

Query: 383  TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            T   G V + V + S     Y  ++D GPGI   E   +   F Q  +     +QG GLG
Sbjct: 1056 TDA-GSVTLRVSFVSSVSQLYFEVEDTGPGITPDEQERLFKPFVQTDVGR-RHQQGTGLG 1113

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNHESTQYKC 493
            L I+Q  ++  GG+  I S +  G + +  +P   +      + ++PE+        C
Sbjct: 1114 LAISQQYVSLMGGKITIVSVVDGGAKFMFNIPVEVIKSENIDIEYLPEEELTLDDISC 1171


>gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1305

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            +     ++   +  H   S + +L+   ++  +  +         + ++RA+  N AKS 
Sbjct: 779  LWGLLGAYQNRVPRHWEDSEISLLTRVGDQLGVALQQAELIEELKKAKERADAANQAKSE 838

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA+MSHELRTPLNAILGF++++         N+  ++++G I RSG+HLL+L+N++L++
Sbjct: 839  FLANMSHELRTPLNAILGFTQLLAR---DSSLNQKQQDFVGIIGRSGEHLLSLLNDVLEM 895

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
            S+IEAGR  L+E+   L  ++     M QL+AQ KN+++    DP +   +  DE  +RQ
Sbjct: 896  SKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLIFHCDPDVPQYIKTDESKLRQ 955

Query: 371  VILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            V++NL+ N +KFT  G   + V V   + +     ++D GPGI   E+  +  +F Q   
Sbjct: 956  VLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEVEDTGPGIGTEELDILFQAFVQTVS 1015

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486
              KS  +G GLGLPI+Q  +   GG   + S L +G      +P T   +     P   H
Sbjct: 1016 GRKSQ-EGTGLGLPISQKFVELMGGNISVNSTLHKGSTFSFEIPVTHSESTRVSKPNQTH 1074

Query: 487  E 487
            +
Sbjct: 1075 Q 1075


>gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1079

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 10/328 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +      +  + + +  +S  + D     ML ++++    +   L        +  A + 
Sbjct: 484 MLAGALAMYKSSARKVTLSDFIKDNFFKVMLISSIAVAVVLLTILMLLQKARKAEAAARK 543

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 E   +      ++AE  N AKS FL++MSH++RTP+NAI+GF+ +         
Sbjct: 544 AASDTQE-LNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI---D 599

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  K+Y+G    S  HLL+LIN++LD+SRIE+G+  L E  ++L D++ +   ++  +
Sbjct: 600 DTDRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQ 659

Query: 343 AQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
              K +E++   +D +   V+ D+  + Q++LNLLSNA+KFT  GG V V V   +G   
Sbjct: 660 IYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVR 719

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   IKDNG G+++     +   F +   +  S  QG GLG+ I ++I+   GG  
Sbjct: 720 GCGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTI 779

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484
            +++   +G E    +P        P +
Sbjct: 780 EVQTAQGKGTEFTVCVPMRAQTEQRPVE 807


>gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 510

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 155/364 (42%), Gaps = 15/364 (4%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLL-----IALSISALSNFMLPY----AVFLSFFPVVVAL 174
             L+ P     E   +     L+     I  ++ ++            + +       A 
Sbjct: 134 FPLLAPLAKQLEMDHLMAIPLLIGSDTPIDSTLVSMLTQPFMSGKDELIGVVLAGNAEAA 193

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-ELEVAKS 233
                  +   ++ L      +       +  L+ + ++      EK  +   ELE    
Sbjct: 194 GKVYAEIVPDGNVQLGLASLASQISSAINSAMLYWALLEERDSLEEKVQVRTRELEAQSR 253

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           L  + ++ AE  N AKSRFLA+MSHELRTPLNAI+G+SE++  +           E +  
Sbjct: 254 LLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDA-SEWGEWEISEDLEK 312

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  +GQHLL LI++ILD+S+IEAGR +L    +    ++ + +  ++    + N  +   
Sbjct: 313 IKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQVD 372

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQYISIKDNGP 410
             P   +++ D   +RQV+ NLLSNA KFT   G + +               ++ D+G 
Sbjct: 373 TPPEEITLFTDATKLRQVLYNLLSNATKFT-TDGEIMLKASLCRLRRQPRLEFAVSDSGI 431

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G++E ++  +   F Q   +      G GLGL I++      GG     S+   G     
Sbjct: 432 GMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATFTV 491

Query: 471 ILPN 474
            LP 
Sbjct: 492 SLPL 495


>gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1183

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 101/490 (20%), Positives = 185/490 (37%), Gaps = 21/490 (4%)

Query: 6   KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65
             + +D+    S     +  E  +    +       + +  +V   + +  +L   +  W
Sbjct: 275 NEEGRDLVARTSSVVGRIVSETEAAAIANERRAGAALTTGRQVMMGIAVVTVLGPLLFVW 334

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
                          +     +              E+      L+V Q A+        
Sbjct: 335 MYLGRNIVNRLAGLASAMHRIVEGDYHTKVEASGNDEIADMAGELVVFQRALAQLQDSTD 394

Query: 126 LVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            ++        +      A  +  +S +A+      ++      P        A      
Sbjct: 395 ALKESEGRLRTILDTSPLALAISRVSDNAILYVNPRWSELFGSRPDDSNGVDAASFYADP 454

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL--------------IAELEV 230
            D      L     +       + +++            +              I + + 
Sbjct: 455 ADRDRVVELVRGQGYLADYESRMRRADGSEFWAMMSAAAIDMDGEPAVCVSTADITKRKE 514

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ + AKS FLA+MSHE+RTP+N +L  ++++E   +     +  KE 
Sbjct: 515 QEDALAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLA----QEQKEM 570

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I  S   LL +IN+ILD S+IE+G+ EL    +SL D++     +L  RA EK I +
Sbjct: 571 ARVIRDSATALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGL 630

Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              IDP+L  ++  D   +RQ++ NL  NAVKFT   G V ++    +      +I D G
Sbjct: 631 MTFIDPALPDLFLGDATRLRQIVTNLAGNAVKFTDK-GYVRISAEAAADGHVRFTISDTG 689

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+ + +   +   F Q   +I     G GLGL I + ++A   G+  + S++ +G    
Sbjct: 690 IGLNDEQQAKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDSQVGQGSSFW 749

Query: 470 AILPNTRVLN 479
             LP  +V  
Sbjct: 750 FSLPLEQVGE 759


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 30/412 (7%)

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
                +      EV V+  +       +G+   +  +  PG    +  +I  +   L+ L
Sbjct: 295 AISYNDPFSGDREVEVFTSYFKAFDWYLGVVVPMAEIKAPGKNLIKRQSIIIALISLVGL 354

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           + + L  F +      +      AL TQ     +   I +  +          +      
Sbjct: 355 AAALLLVFRISRP-LNTLASYAKALPTQDFSQQNPDTIKIKRLAMKYSDEVGRLAESFV- 412

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                         + A +      +   ++ A + + AKS FLA+MSHE+RTP+N +LG
Sbjct: 413 -------------FMEASIRKNIQQALHEKEIAVKASQAKSEFLATMSHEIRTPMNGVLG 459

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +E++    +        + ++  I  SG  LL++IN+ILD S+IEAG+ +L    + L 
Sbjct: 460 MTELVLETELSS----EQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQ 515

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           ++++  +  L   A++K +++   +   + + V  D   +RQV+ NL+SNA+KFT   G 
Sbjct: 516 ELIKHLVTSLSPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQR-GE 574

Query: 389 VHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V V+              I ++D+G GIA      +  SF Q   +      G GLGL I
Sbjct: 575 VLVSAVIFEQSATALSLQIRVRDSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAI 634

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVL--NFIPEDNHESTQY 491
           ++ ++   GG     S+L +G      L   P  ++L    +P    E  Q 
Sbjct: 635 SKQLIEMMGGSIGFSSELGQGTTFWFDLKLKPTEQILSDETLPVSTLEQQQI 686


>gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 903

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 101/364 (27%), Positives = 174/364 (47%), Gaps = 24/364 (6%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
             T +    +LI ++ S L  F L  +V     P+   +     +    LD  ++G L  
Sbjct: 173 RDTFFAVIMVLIGIAFSTLFGFRLVKSV---TQPITDMVQAVHKIREGRLDTRVSGQLTG 229

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEENL 247
            L         + K+  +      +          + + ++E+     D  +KRA+E   
Sbjct: 230 ELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAAR 289

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+  +   ++ P    +  +Y+  I +S ++LL +IN+
Sbjct: 290 VKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKSARNLLGIIND 345

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           ILD S++EAG+ +L     SL D + E + +L   A +K +E+  ++D  +   +  D  
Sbjct: 346 ILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPM 405

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI--KDNGPGIAEGEIPTVL 421
            ++QV+ NL  NA+KFT   G V V +      SG    +++  +D G GI+E +   + 
Sbjct: 406 RLQQVLTNLTGNAIKFT-EHGNVDVRIEQIGSASGSKVRLNVLIRDTGIGISEEQQRQLF 464

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   +I     G GLGL I Q ++   GGQ    S+L +G      L     ++ +
Sbjct: 465 QAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVFSFSLDLE--VSPL 522

Query: 482 PEDN 485
           P+ +
Sbjct: 523 PQTD 526


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+      ++ AE  N AKS FLA+MSHE+RTP+N I+G + +++   + P   
Sbjct: 605 ITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTTVITP--- 661

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+ +I  S   L  LI++ILDLS+IE+G+ EL  S  SL   +RE +   Q + Q
Sbjct: 662 -EQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQFQIQ 720

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K + +   I  ++  +   D+   RQ++LNL+ NA+KFT   G + +T    + +    
Sbjct: 721 HKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQ-GSIAITARLVAQQDDLA 779

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +SI D G G++  ++  +   F Q   +I     G GLGL I Q ++   GG+    
Sbjct: 780 LIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIWAE 839

Query: 460 SKLREGVEVIAI----LPNTRVLNF 480
           S    G          +P +  +  
Sbjct: 840 STEGNGSSFHIEMRFFIPESSAIQS 864


>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1550

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            HL +     +     +  L+      +   +  R +AE  + AKS FLA+MSHE+RTP+N
Sbjct: 848  HLLRQIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMN 907

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            A+LG + ++    +    N+  ++++  I  SG  LL LINEILDLS++EAG   L    
Sbjct: 908  AVLGMTGLMLETLL----NQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLN 963

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             +L   V E + +L  +A  K +EI           +  D   +RQ+++NL+ NA+KFT 
Sbjct: 964  FNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT- 1022

Query: 385  IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G V + V   S        + ++ D+G GI   +   + T F Q   +      G GL
Sbjct: 1023 SFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGL 1082

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GL I + ++   GG+  + S+L +G +    +P  + L  +
Sbjct: 1083 GLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPV 1123


>gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 587

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 126/232 (54%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GF+E +    M   + +T + ++  I +  + 
Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--HDAQTLEYFLTIILKESER 408

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS+IE   + L+ S + L ++++E I+ML+ +A +K I +    +  +  
Sbjct: 409 LQHLIQDLLDLSKIEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCY 468

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ D   ++Q+ +NL++NA+ +T  GGRV V V     +  ++ + D G GI + EIP +
Sbjct: 469 MYGDLHRLKQIFINLINNAIAYTPAGGRVTVYVE-KDEKELHVHVSDTGIGIEQKEIPRI 527

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  H G   ++S++  G       
Sbjct: 528 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTVHF 579


>gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32]
 gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32]
          Length = 937

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I RS  +LL++IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   S     +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 771

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 18/374 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VAL 174
             G+    LT+                   L+ L++  ++             P+  +  
Sbjct: 144 LSGVLPAQLTVEFSQQGQYLSTLENLLTLFLVMLALIMIAMVPALRFSRQLTQPISDMVS 203

Query: 175 STQAIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
           + Q I    +           L+ +          +     +    +     +  + +  
Sbjct: 204 AVQRIRDGDLSMAIHTQAKGELSELETALRQMVAALADAQTELQQNVDQATQDLRETLET 263

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+     D  RK A + +  KS FLA+MSHE+RTPLN ILGF+++++   M P      
Sbjct: 264 IEIQNIELDMARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKLLDRSPMTP----RQ 319

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++Y+  IH+S + LL +IN++LD S+IEAG+  L  + ++L D++ +   +L   AQE+ 
Sbjct: 320 EDYLSTIHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERG 379

Query: 348 IEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---- 402
           +E           ++  D   +RQV+ NL+SNA+KFT   G V V       RG      
Sbjct: 380 LEQAAIIYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQ-GSVVVRAMLEEDRGAEAIIK 438

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I++ D GPG+       + ++F Q   + +  E G GLGL I++ ++   GG+  I S+ 
Sbjct: 439 ITVTDTGPGLNPEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSRE 498

Query: 463 REGVEVIAILPNTR 476
             G      L   R
Sbjct: 499 GRGSTFWFTLRTER 512


>gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 1421

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 144/277 (51%), Gaps = 11/277 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I E + A+      +++AEE N++KSRFLA+MSHE+RTP+NAILG S+V+    M P
Sbjct: 683 LQDITERKAAERAMLIAKEQAEEANISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMAP 742

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 K+++  IH S + LL +IN+ILD S+IEA + EL     +L +++ +  ++   
Sbjct: 743 ----KEKDFLLKIHSSSKMLLGIINDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQ 798

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
            A E  +E++      +  +   DE  + QV+ NLLSNA+KFT  G   + + +      
Sbjct: 799 SAAEHGLELYFHKKSDVPEIIVGDELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHEN 858

Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              I  S+ D G GI++ +I  +   F Q   ++     G GLGL I++ ++   GG+  
Sbjct: 859 RAIIGFSLTDTGIGISDEDISKLFQPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELS 918

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           + S   EG      +    V     E +HE  + + Y
Sbjct: 919 LSSVKGEGSTFSFDI---DVEVVSWEQSHEHIENEGY 952


>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 642

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +IA+    +      ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I    +    
Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  +EY+  I +SG  LLN+IN+ILD S+IE+GR EL E   SL   + E + M+  +A
Sbjct: 296 DEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKA 355

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
            +KNIE+   +   +   V+ D   +RQV++NLLSNA+KFT   G V ++V     +   
Sbjct: 356 LDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCVRDQANS 414

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G G+   +I  +   F Q    +    +G GLGL I + ++   GG    
Sbjct: 415 KLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWY 474

Query: 459 RSKLR-EGVEVIAI 471
                 +G      
Sbjct: 475 ERNPNQQGSVFTFT 488


>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
 gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
          Length = 1262

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 140/275 (50%), Gaps = 10/275 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           +    + K+  +I       + +  +L+ +       +++AE  N AKS FLA+MSHE+R
Sbjct: 506 FSQRIVKKAEDEIGQLGTSFNTMADDLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIR 565

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N I+G +++     +        ++Y+  +  S Q LL +I++ILD S+IEAG  ++
Sbjct: 566 TPMNGIIGLTQLALKTDLTA----EQQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQM 621

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                SL  ++     +L +R +EK +E+   ID S+   +  D   + QV++NL++NA+
Sbjct: 622 ELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAI 681

Query: 381 KFTAIGGRVHVTVG---WTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + + +     T+ +     SIKD+G GI+   I  +  +F Q   +      
Sbjct: 682 KFTDQ-GEILIKIEMLNLTAKQITLCFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFG 740

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I + ++   GG   + S+L +G      
Sbjct: 741 GTGLGLAICKRLVEMMGGNIWVESQLEQGSSFSFT 775


>gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1136

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/269 (40%), Positives = 153/269 (56%), Gaps = 2/269 (0%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             + + Q + +  I  L   +    E +  AE  N AKS FLA+MSHELRTPLNA+LGF++
Sbjct: 864  DLRNTQKDLEASIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELRTPLNAVLGFAQ 923

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++  E  G L N+ YKEYIG I  SGQHLL LI ++LD+S IEAGR  L ES +++ D++
Sbjct: 924  IMADEMWGSLGNDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTLRESNVNISDVI 983

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               + +L  +A+   I +   +   L  +  D   +++++LNLL NA+KFT  GG V +T
Sbjct: 984  VTSMRLLSSQAENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALKFTPAGGAVTLT 1043

Query: 393  VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMAN 451
                      I ++D G GI+  ++  VL  F QG   I   E +GVGLGLPI +S+M  
Sbjct: 1044 ASHDQSG-VTICVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLGLPITKSLMEL 1102

Query: 452  HGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            HGG   I SK  +G       P +R L  
Sbjct: 1103 HGGTLSIDSKEGKGTTACVHFPASRSLAA 1131


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL D++     ++ L+AQ
Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + ++        Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
 gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
          Length = 756

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 103/283 (36%), Positives = 155/283 (54%), Gaps = 5/283 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSH 258
            +T    +    +   Q  +  L  +      +++   E + RAE  N AKS FLA++SH
Sbjct: 471 RLTESEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRAEAANQAKSEFLANISH 530

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAI+GFS+++  E  GPL  + Y +Y  DI+ SG +LLN+IN+ILD+S+IEAGR
Sbjct: 531 ELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVINDILDMSKIEAGR 590

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             +    ++  +   +   ++   A EKNI I   +  +L  V  D++ ++QV+LNLL+N
Sbjct: 591 MSIETEVVNASEAAEDAARIITGAASEKNIVISADVADNL-HVDVDKRALKQVLLNLLAN 649

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT   G V +      G      + D G GI+E +I  +   F Q         QG 
Sbjct: 650 AVKFTPDHGTVTLKARPR-GDKVRFEVTDTGIGISERDIERLAKPFVQVENQFTKTHQGS 708

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GLGL IA+S++  HGG+  I S++++G  V   LP  R  +  
Sbjct: 709 GLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLPLARTDSTQ 751


>gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 835

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 13/356 (3%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           + L         +     +    I  ++ A+ N +    V      V          +  
Sbjct: 210 IPLASTYAEANSFSLKLSALLFGIIAALFAVQNRIFERLVLKPLAVVTEG-------ARR 262

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           +            L     +       NV          +L  ++E   +     RK AE
Sbjct: 263 IAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKDAE 322

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E + AKS FLA+MSHE+RTP+NAI+G ++++    +     +  +  + D   + + LL 
Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLDDSTTAAESLLI 378

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN+ILDLSR+EA R EL   A+ L   V     +  ++A  K I +   +       VW
Sbjct: 379 IINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVW 438

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVL 421
            D   +RQ++ NLLSNA+KFT  GG V +         G   ++ D G GI + +  ++ 
Sbjct: 439 CDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIF 498

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             F Q   +      G GLGL I + ++   GG   + S+   G      LP    
Sbjct: 499 EMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPA 554


>gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
 gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
          Length = 1656

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 142/262 (54%), Gaps = 12/262 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+E++      +E ++RA+  + AKS FLA+MSHE+RTP+NAI+G S +     +G ++N
Sbjct: 1033 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1088

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + YI  +HRSG  LL++IN+ILD S+IEAG+  +       +   ++ I +++ +A 
Sbjct: 1089 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1148

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            EK + +   IDP L + +  D   + QVILNL+ NA+KFT   G V +TV         +
Sbjct: 1149 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTET-GSVSLTVALVESDDNSL 1207

Query: 404  S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +    + D G GI++  +  +  +F Q          G GLGL I+Q ++   GGQ  + 
Sbjct: 1208 TMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVG 1267

Query: 460  SKLREGVEVIA--ILPNTRVLN 479
            S   +G E      LP + V  
Sbjct: 1268 SVFGQGSEFSFVLTLPRSSVEE 1289


>gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1039

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/272 (33%), Positives = 131/272 (48%), Gaps = 5/272 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            ++     E E         R  AE  N  K  FLA++SHELRTPLNAILG+++++    
Sbjct: 633 TDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRK 692

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +  T    +  I R+ + L  LI ++LD+SRI  G   LS   I L+ +V   I  
Sbjct: 693 F---DEATTARALETIERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDT 749

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++  A+ K I I  K DP +  V  D   ++QV+ NLLSNAVKFT+ GG V V +     
Sbjct: 750 VRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIES 809

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GIA   +P V   F Q   +   +  G+GLGL I + ++  HGG   +
Sbjct: 810 -SVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSV 868

Query: 459 RS-KLREGVEVIAILPNTRVLNFIPEDNHEST 489
            S  + +G   I  LP   V          S+
Sbjct: 869 ESLGVGQGATFIVNLPMKAVYVEANTAEQPSS 900


>gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 969

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 12/296 (4%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           + +   +    ++         +     +  + +  +E+     D  RK A E +  KS 
Sbjct: 243 LESGLNAMAAALSKAQADMQQNVDQATEDLRETLETIEIQNIELDFARKEALEASRIKSE 302

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN I+GF+E++   ++        ++++  I +S + LL +IN+ILD 
Sbjct: 303 FLANMSHEIRTPLNGIIGFTELLLKGSLAR----QQRDHLNTIRKSSEILLTIINDILDF 358

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+         L DIV E ++ML   A +KN+++   +   + + +  D   ++Q
Sbjct: 359 SKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLVYNDVPNNLMGDPLRLKQ 418

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSF 424
           +I NLL+NA+KFT   G V +                 +S+ D G G++  +  ++  +F
Sbjct: 419 IITNLLNNAIKFTHT-GEVVLRASLEEEDASNGSVTLRVSVADTGMGLSRAQQRSLFDAF 477

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            Q   +      G GLGL I++ +    GG+  + S+L +G      L +TR    
Sbjct: 478 SQADASTARQYGGTGLGLAISKRLAEEMGGKIGLESELGKGSTFWFTLTSTRASQH 533


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 158/285 (55%), Gaps = 9/285 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L    ++ +L A  +       + ++ A+  N AKS FLA+MSHELRTPLNAILGF++++
Sbjct: 531 LGVAVQQAELFAHTQHQAEELKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLM 590

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + +         +++YI  +++SG+HLL LIN++L+LS+IEAGR  L+E+   L  ++  
Sbjct: 591 QRDV---SLKADHQQYIKIVNKSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCS 647

Query: 335 CIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +L+L+AQ KN+ +  +ID      +  DE  +RQV++NLL NA+KFT   G V + V
Sbjct: 648 LETLLKLKAQAKNLSLRFEIDSQVPPFIKNDENKLRQVLINLLGNAIKFTNK-GNVTLRV 706

Query: 394 ---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                        +++D GPGI   E+  +  +F Q     +S  +G GLGL I+Q+ + 
Sbjct: 707 INQELEQLNTLIFAVEDTGPGIPPEEVQDLFKAFKQTKTGRESQ-EGTGLGLRISQNFVQ 765

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
             GG+  I S++ +G      LP + V       + + +Q    A
Sbjct: 766 MMGGKITIESEVGKGSCFSFALPISVVEATPTVPSPDISQVSGLA 810


>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 642

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +IA+    +      ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I    +    
Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  +EY+  I +SG  LLN+IN+ILD S+IE+GR EL E   SL   + E + M+  +A
Sbjct: 296 DEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKA 355

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
            +KNIE+   +   +   V+ D   +RQV++NLLSNA+KFT   G V ++V     +   
Sbjct: 356 LDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCVRDQANS 414

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G G+   +I  +   F Q    +    +G GLGL I + ++   GG    
Sbjct: 415 ELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWY 474

Query: 459 RSKLR-EGVEVIAI 471
                 +G      
Sbjct: 475 ERNPNQQGSVFTFT 488


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 12/292 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +     + L  + +   LI EL++AK     +R+ A   N AKS FLA+MSHE+RTP+N
Sbjct: 144 QITDITRQELRVR-QLKGLIRELKLAKEELKVSREMAVVANRAKSEFLANMSHEIRTPMN 202

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF ++    T+    N    +Y+G +  + Q L+ L+ ++LD+S+IE+G+  + +  
Sbjct: 203 AILGFVDL----TLATELNAEQSKYLGMVRSAAQSLMRLLEDVLDISKIESGQLVVEQQP 258

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384
            SL  ++R  + +L ++A +K +++  +I   +  V   D   + QV++NLLSNAVKFT 
Sbjct: 259 FSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGDANRLTQVLVNLLSNAVKFTD 318

Query: 385 IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V + +       + IS    ++D G GIA   +  V   F Q   +      G GL
Sbjct: 319 A-GEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTRRFGGSGL 377

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           GL I + ++ N GG+  + S+L +G      LP   +    P+   E    +
Sbjct: 378 GLAIVRQLVENMGGRVWVESELGKGSTFYVTLPFG-IAAPQPDQYAEDVSER 428


>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 2035

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 11/279 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             F+  ++        K        +D+  E E A       +  AEE    KS FLA+MS
Sbjct: 1262 LFWARLSGRAIDYLDKEKGVVVVVEDISTEKE-ALEAIQRAKSLAEEATQVKSAFLANMS 1320

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HE+RTP+NAI+G + +     +        + Y+  I  + +HLL +IN+ILD S+IEAG
Sbjct: 1321 HEIRTPMNAIIGMAHLALQTELSN----QQRNYLVKIDSASKHLLGIINDILDFSKIEAG 1376

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            +         L D++     +  ++AQEK +E+   I+ ++ + +  D   + Q+++NL+
Sbjct: 1377 KMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIETNIPTALRGDPLRLGQILINLV 1436

Query: 377  SNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            +NA+KFTA  G + + V   +           + D G GI E +   +  +F Q  ++  
Sbjct: 1437 NNAIKFTAQ-GEIRLFVKLLAQEAKQVHLLFEVHDTGIGIDEAQQAKLFEAFSQADLSTT 1495

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                G GLGL I + ++    G+  ++S L EG      
Sbjct: 1496 REFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFSFS 1534


>gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 734

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/288 (37%), Positives = 161/288 (55%), Gaps = 3/288 (1%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            ++++       L +     +       + I   + A+      +++AE  + AKS FLA
Sbjct: 448 GSIAWVNLTLSALRRD--GRVEYLIGVTEDIERRKQAEVQLLAAKEQAESASRAKSDFLA 505

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSHELRTPLNAI+GF+E +  + +GP+  E Y+EY GDI  SG+HLL +I +ILDL++I
Sbjct: 506 GMSHELRTPLNAIIGFAETMYSQVLGPI-PERYREYAGDIAASGRHLLGIITDILDLAKI 564

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGR EL E+ + +  +V   I +L+ R     +++   I  SL  + ADE+ +RQV++N
Sbjct: 565 EAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERRIRQVVIN 624

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LL+NAVKFT  GG V V+   T+  G  + + D G G+ + E+   +  F Q    I   
Sbjct: 625 LLANAVKFTPHGGSVSVSANLTTDGGLALHVSDTGIGMTDEEMSQAVEPFVQVDARIARR 684

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +G GLGLP+  +IM  H G   I S+  +G  V    P  RVL+  P
Sbjct: 685 HEGTGLGLPMVAAIMEMHRGTIAIASRPNQGTTVTVTFPRDRVLSADP 732


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 28/397 (7%)

Query: 103 VYVWRIW-LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            Y WR    L      G     L L        ++L  Y    L+   +  A++  +   
Sbjct: 122 AYSWRRIDFLAPAQVAGQPAGWLRLSTDLGGAYQHLLGYLGLILVEMAAALAIALHLQSR 181

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            V     P+         ++ H+ D+S+  +   A          L     +++    E+
Sbjct: 182 QVGRLIEPLQ-------DLTRHMADVSVGRLDIRAADSRVTEIDQLVTGFNQMVEQIRER 234

Query: 222 DDLIAEL--------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           D  ++          E         ++ AE  + AKS FLA+MSHE+RTP+N +LG +E+
Sbjct: 235 DHWLSTHLGNLEQIVEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTEL 294

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +G     T ++++  + RSG+HLL++IN+ILD S+IEAG+ EL      L +++ 
Sbjct: 295 L----LGTELEPTQRQFVEAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLE 350

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E + +    A+ K +E+   + P     V  D   +RQ++ NLL NAVKFT   G + + 
Sbjct: 351 ESLELFSQPARRKGLELVADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTET-GEILLR 409

Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           +       +G    + + D G GI       +   F Q   +      G GLGL I + +
Sbjct: 410 LLVVEPRDNGLKLALVVSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHL 469

Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPE 483
           +   GG+  + S   +G        LP  ++    PE
Sbjct: 470 VDMMGGRIHVESTPGKGAAFTVELDLPLGKLPVASPE 506


>gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 937

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I RS  +LL++IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   S     +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 365 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 421

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 422 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 480

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 481 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 539

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 540 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 599

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 600 SEEGKGSTFEFS 611


>gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 928

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 13/298 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +       VK+L+  A +  +        +   + ++ A+  N AKS FLA+MSHELRTP
Sbjct: 417 SRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLANMSHELRTP 476

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGF++++             +EY+  I +SG++LL+LINE+LDLS+IEAG   L+ 
Sbjct: 477 LNAILGFTQLLGQNYG---LTSQQQEYLQIIQQSGKYLLSLINEVLDLSKIEAGAVTLNP 533

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
           +  +LI +++    MLQ++A  KN+ +  ++   +   V  DE  +RQV++NLL NA+KF
Sbjct: 534 TNFNLITLLKRINTMLQIKASSKNLVMNIQLQQDIPDYVQTDESKLRQVLVNLLDNAIKF 593

Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V + S     Y  ++D GPGI   E   +   F Q  +     +QG GLG
Sbjct: 594 TDA-GSVTLRVSFVSSVSQLYFEVEDTGPGITPDEQERLFKPFVQTDVGR-RHQQGTGLG 651

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNHESTQYKC 493
           L I+Q  ++  GG+  I S +  G + +  +P   +      + ++PE+        C
Sbjct: 652 LAISQQYVSLMGGKITIVSVVDGGAKFMFNIPVEVIKSENIDIEYLPEEELTLDDISC 709


>gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1191

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 156/327 (47%), Gaps = 15/327 (4%)

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----AEL 228
            L      S+               S F  I Y +    ++      ++ + +      EL
Sbjct: 754  LVASFEFSIKPYFHQTTTFYILTASCFLLIGYLINYLRLRASRLHHQRLEELVGQRTQEL 813

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +         ++ AE  N  KS F A++SHE+RTP+N+I+GF++++  ET+    N T++
Sbjct: 814  QRQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDETV----NPTHQ 869

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             Y+  + +SG  LL++I+++LD+S++EA +  L     +L    R+ + M Q +  EK +
Sbjct: 870  HYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKLSEKAL 929

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYI 403
            ++    DP++ S +  D    RQV+LN++ NA+KFT   G++ + +              
Sbjct: 930  DLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDS-GKISIRLELVRQYALHAHVRC 988

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +I D G GI E ++  +  +F Q S     +E G GLGL I++ ++    GQ  + S++ 
Sbjct: 989  AISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVVSRVG 1048

Query: 464  EGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G       P   + +  PE    + +
Sbjct: 1049 RGSTFTVDFPKIPISDSAPEQKAGAPE 1075


>gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 974

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/331 (28%), Positives = 160/331 (48%), Gaps = 6/331 (1%)

Query: 148 ALSISALSNFMLPYAVFLSFF---PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            L+   L +    ++V        P   A     I +     +++   +   L FF    
Sbjct: 374 GLAGRVLVSGAPEWSVGDPTLAADPRAPAAVEHGIRAGFGFPVTVGRDVVAVLEFFARDA 433

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                S ++++S    +   + E + A+    + ++ AEE + AKS FLA+MSHELRTPL
Sbjct: 434 SPPDASLLRVMSNIGAQLGRVIERKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPL 493

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GF+ ++       L  + + E +  I  S +HLL+LIN ILDL+++EAGR E+  S
Sbjct: 494 NAIIGFTRLVMRRAKDVLPVKQF-ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPS 552

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             +L  ++  C+  ++   + + + + + +      +  DE+ +RQ+++NLLSNA+KFT 
Sbjct: 553 DFALEPVLDLCLRTVEPLVKNEGVRLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTE 612

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V + V          ++ D G GI  G +  +   F Q   +   +  G GLGL I
Sbjct: 613 A-GSVTLRVRSVDEG-IEFAVMDTGIGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAI 670

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  +    GG+  + S+  EG      +P  
Sbjct: 671 SHRLARLLGGRIDVESREGEGSTFTLTIPPR 701


>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
 gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
          Length = 1756

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAELEVAKS 233
               +++     ++             +      + K     LS        + E      
Sbjct: 964  LAPLLAGEQRHLAQEMRYRKPDGSLRWADMRAVVLKDYQGGLSALVLTMSDVTERRQINE 1023

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               + ++ A+  + AK+ FLA+MSHE+RTP+NAI+G +++     +         +Y+  
Sbjct: 1024 ALRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTDL----PPRQADYLRK 1079

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  + Q LL +IN++LD S+IEAGR EL +   +L +++ +   +  +RA+EK +E+   
Sbjct: 1080 IDSASQSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLFA 1139

Query: 354  IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKD 407
            ++P +   +  D   + Q+++NLLSNA+KFT   G V + +    G          S++D
Sbjct: 1140 VEPEVPARLNGDMLRLGQILINLLSNAIKFT-DHGEVVLAIRQLDGAPPGQTRLTFSVRD 1198

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G G++  +   +  SF Q   +      G GLGL I+Q +++  GGQ  + S    G  
Sbjct: 1199 TGIGMSPEQQARLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMGGQIQVNSAAGAGST 1258

Query: 468  VIAILPNTRVLNFIPEDNHE 487
                +           +  E
Sbjct: 1259 FHFSIELALPEQPPQPELFE 1278


>gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1048

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 10/297 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
            M          ++  +    +            I+  + A+      R+ AE  N  KS
Sbjct: 378 VMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEAEKALVTARQAAEAANRTKS 437

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+NA++G S +     + P      ++Y+  +H S   LL ++N+ILD
Sbjct: 438 DFLANMSHEIRTPMNAVIGLSHICLQTELTP----KQRDYLEKVHNSAHSLLGILNDILD 493

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           LS+IE+GR E+ E   +L +++     ++  R   K ++    + P +   +  D   + 
Sbjct: 494 LSKIESGRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPVNLRGDPLRLG 553

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFG 425
           QV+ NL+ NAVKFT   G + VTV   +   Q I+    ++DNG G+ + +   +   F 
Sbjct: 554 QVLTNLVGNAVKFTEE-GEIAVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFS 612

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           Q   +      G GLGL I++ ++   GG+  + S+  +G   I  LP  +     P
Sbjct: 613 QADTSTTRKYGGTGLGLSISRQLVELMGGEIRVESEAGKGSSFIFTLPLQKDAAISP 669


>gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 859

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 14/293 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                +K  S        I +   ++    + +  AEE N+ KSRFLA+MSHE+RTP+N 
Sbjct: 459 WNSFVIKEYSLIYSIGRDITKRMESEDELKKAKIAAEEANIEKSRFLANMSHEIRTPING 518

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G +++  +  +        +EY+  +  S  HLL++IN+ILD+S+IE+G+++L     
Sbjct: 519 IMGMTDLTLMTELTN----EQREYLNMVKASSSHLLDIINDILDISKIESGKFKLDLVPF 574

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA 384
           +L + + + +  + + A +K IE+   IDP++S   +  D   + Q+++NLLSNA+KFT 
Sbjct: 575 NLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNIIGDPSKLDQILMNLLSNAIKFTD 634

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G + V      G         S+ D G GI E ++  +  +F Q   +      G GL
Sbjct: 635 R-GNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDKLFKTFSQIDDSYTKKYGGTGL 693

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI---LPNTRVLNFIPEDNHESTQ 490
           GL I++ ++    G   + SK  EG          P+        ED++E  Q
Sbjct: 694 GLSISKHLVNMMNGDIWVTSKHNEGSCFYFTAEFFPDENSSKCFLEDDNEINQ 746


>gi|46204504|ref|ZP_00049895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 349

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 135/227 (59%), Positives = 168/227 (74%)

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLNAILGFSEV++ E  G      Y+EY  DIH SG HLLNLINEILDLSRIE
Sbjct: 1   MSHELRTPLNAILGFSEVMKNEVFGVHTAPAYREYANDIHDSGMHLLNLINEILDLSRIE 60

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGRY+L+E A+ L   V EC  M+ LRA+ K       ID SL  +WADE+ +RQ++LNL
Sbjct: 61  AGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFTSLIDDSLPRLWADERALRQIVLNL 120

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNAVKFT  GG + + VGWTS  GQY+S+KD+GPGI E E+ TV++SFG+GS+AIK+AE
Sbjct: 121 LSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRGSLAIKTAE 180

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           QG GLGLPI + ++  HGG F ++SK REG EVI   P +R ++ +P
Sbjct: 181 QGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 227


>gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
 gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
          Length = 950

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 169/398 (42%), Gaps = 23/398 (5%)

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
                 W+ +       +G     + ++    ++          TL I +    +  F+ 
Sbjct: 148 PENYESWQNYSQANAQLLG----YVAVMMTNEFSAISRYNTILTTLFITIIGLLIGGFLA 203

Query: 160 PYAVFLSFFPVV-VALSTQAIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSN 211
                    P+  +      I   H+           L  +          + ++  +  
Sbjct: 204 RRMSMSVTTPIEKMVEGINRIKDGHLDTRLESEASAELLTLQEGINLMAENMEHNQEEMQ 263

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +     +  + +  LEV     D  R++A E +  K+ FLA+MSHE+RTP+N ++GF+
Sbjct: 264 LAVDQATEDLRETLETLEVNNLELDIARRQALEASRIKTEFLANMSHEIRTPMNGVIGFT 323

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++    +        K+++ DI RS   LL++I++ILD S+IEAG+         L + 
Sbjct: 324 ELLLKTELNN----KQKDFLFDIKRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLREC 379

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           V +   ML   A +K IE+   I   +   +  D   ++Q+I NL++NA+KFT   G V 
Sbjct: 380 VDDIFRMLGPNANKKGIELVSLIYSDVPKALLGDPIRIKQIITNLVNNAIKFT-KSGSVE 438

Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +     S         + +KD+G G+ + +   +  +F Q   + K    G GLGL I++
Sbjct: 439 LYAEVESENQKGLKLKVQVKDSGIGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISK 498

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           S++   GG   + S   +G      L   R  + +PED
Sbjct: 499 SLVEKMGGNIGVNSTAGDGSTFWFTLQCERT-DSLPED 535


>gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 585

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GF+E +    M   + +T + ++  I +  + 
Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--KDEQTLEYFLSIIWKESER 408

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++LDLS+IE   + L    + L D++RE  +M Q +++EK I+ +    P    
Sbjct: 409 LQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDFYLH-APKSVY 467

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++Q+ +NL++NA+ +T  GG+V + +     +   + +KD G GI E EIP +
Sbjct: 468 MEGDANRIKQIFINLITNALTYTPKGGKVELMIE-EKEKEILVHVKDTGIGIDEQEIPRI 526

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   ++S + +G       P  
Sbjct: 527 FERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPKQ 581


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 1325

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL D++     ++ L+AQ
Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + ++        Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
 gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
          Length = 1517

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 13/355 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A          L          V+ A+     + +      L   +    +  + I   
Sbjct: 309 LAAHADTYLAQRLRNLFIALGIWVLAAILVVFALGITRR---LRQNVTDLGNVLSRIGDL 365

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             +     +      +   + +E A  L    +  AE+ N AKS FLA+MSHE+RTPLN 
Sbjct: 366 TNQHEHIDVRTSEGVNKAYSLIEDALDLIAYQKGAAEDANKAKSIFLANMSHEIRTPLNG 425

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GF+E+++   +    +E  ++Y+  I +S ++LL +IN ILD+S+IE+ + EL +   
Sbjct: 426 IIGFTELLKNTDL----DEEKRDYVDTIEKSSENLLTIINNILDVSKIESNKVELEDILF 481

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           + I      + +   +A EKNI+I   IDP+L   ++ D   +++V++NL+SNAVKFT  
Sbjct: 482 NPIQDFESAVEIYVAKAAEKNIDILLYIDPTLVHHLYGDITKIKEVLINLMSNAVKFTPE 541

Query: 386 GGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G + V +     +         S++D G GI+E ++  V  +F Q    I     G GL
Sbjct: 542 HGTIVVEILREPSKAPGEAIVTFSVEDTGIGISEDKLANVFNAFSQADSTITRKYGGTGL 601

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GL I+   +A  GG+  ++S + +G      L          +   ES +   +A
Sbjct: 602 GLTISSKYVAMMGGKLQVKSTVGKGTRFYFTLAFKETQKTDADAVFESIKGLNFA 656


>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1358

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 148/320 (46%), Gaps = 14/320 (4%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              + + +      +          +   A   +      L     ++    +E+    +E
Sbjct: 813  VSLAIVVLAPWWATWWFRSTVGLVIAGMAFGAYQSRVRILRLGAARLERQVSER---TSE 869

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            L          +  AE  N AK+ FLA+MSHELRTPLNAILGFS ++    +    +E  
Sbjct: 870  LLERTGELQIAKDAAEAANRAKTIFLANMSHELRTPLNAILGFSNLLREGDV----SEWQ 925

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +  +  I+RSG+HLL+L++E+LD+++IEAGR  L  +   L  +VR+ + M+  RAQ K 
Sbjct: 926  RNDLDIINRSGEHLLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKG 985

Query: 348  IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--- 402
            + +       L   V AD   +RQV++NL+ NA+KFT  G   + +  G     G++   
Sbjct: 986  LALLHADSSGLPRYVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLT 1045

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
              ++D G G+A  +   +   F Q   A      G GLGL I + ++   GG   + S  
Sbjct: 1046 FYVEDTGCGVAPEDHERIFEPFVQVGPAATKK--GSGLGLAITRQLVEMMGGTVSVESTP 1103

Query: 463  REGVEVIAILPNTRVLNFIP 482
             +G      +P     +  P
Sbjct: 1104 GKGSRFRVEVPVYAHEDAGP 1123


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + R+ A E +  KS+FLA+MSHE+RTP+N +LG + ++    +        K+++  
Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQA 622

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S  HLL++IN+ILD S++EA   EL E    L + +   I +L  +A+ K IE+   
Sbjct: 623 IRTSADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAI 682

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIK 406
           +D ++   +  D   +RQV+LNL+SN +KFT   G V + V                 ++
Sbjct: 683 VDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLTLRYEVQ 741

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI       V  +F Q   +      G GLGL I + ++   GG+  + S + +G 
Sbjct: 742 DTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGS 801

Query: 467 EVIAILPNT 475
                LP +
Sbjct: 802 TFWFTLPFS 810


>gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 835

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 13/356 (3%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           + L         +     +    I  ++ A+ N +    V      V          +  
Sbjct: 210 IPLASTYAEANSFSLKLSALLFGIIAALFAVQNRIFERLVLKPLAVVTEG-------ARR 262

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           +            L     +       NV          +L  ++E   +     RK AE
Sbjct: 263 IAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKDAE 322

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E + AKS FLA+MSHE+RTP+NAI+G ++++    +     +  +  + D   + + LL 
Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLDDSTTAAESLLI 378

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN+ILDLSR+EA R EL   A+ L   V     +  ++A  K I +   +       VW
Sbjct: 379 IINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVW 438

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVL 421
            D   +RQ++ NLLSNA+KFT  GG V +         G   ++ D G GI + +  ++ 
Sbjct: 439 CDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIF 498

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             F Q   +      G GLGL I + ++   GG   + S+   G      LP    
Sbjct: 499 EMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPA 554


>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 1320

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +S   E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 575 LTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 630

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL ++      ++  +AQ
Sbjct: 631 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 690

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + V+V          
Sbjct: 691 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 749

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KD G GI + +I  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 750 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 809

Query: 460 SKLREGVEVIAIL 472
           S +  G      +
Sbjct: 810 SAVGMGSTFTFTI 822


>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1550

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            HL +     +     +  L+      +   +  R +AE  + AKS FLA+MSHE+RTP+N
Sbjct: 848  HLLRQIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMN 907

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            A+LG + ++    +    N+  ++++  I  SG  LL LINEILDLS++EAG   L    
Sbjct: 908  AVLGMTGLMLETLL----NQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLN 963

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             +L   V E + +L  +A  K +EI           +  D   +RQ+++NL+ NA+KFT 
Sbjct: 964  FNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT- 1022

Query: 385  IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G V + V   S        + ++ D+G GI   +   + T F Q   +      G GL
Sbjct: 1023 SFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGL 1082

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GL I + ++   GG+  + S+L +G +    +P  + L  +
Sbjct: 1083 GLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPV 1123


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1138

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 10/298 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSR 251
                   L     ++     E ++    LE+     D+ RK         E+ +  KS 
Sbjct: 427 LLEASEEELRVQQEELTQTNNELEEKAKLLELKNEDLDKARKNITDKINEVEQASKYKSE 486

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A+MSHELRTPLN+IL  +++++      LN +  K Y   IH +G  LL+LINE+LDL
Sbjct: 487 FMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIK-YATVIHSAGSDLLHLINELLDL 545

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           ++IE+G+ +L E  I +  + R    + ++ A+EK+I     IDP    +   DE  + Q
Sbjct: 546 AKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPSTFLCDEYRLEQ 605

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ NLLSNA KFT  GG++ +T         +  ++D+G GIA  +   +  +F Q   +
Sbjct: 606 VLKNLLSNAFKFTLNGGKIELTYKHV-NGNIHFIVQDDGIGIAPEKQKLIFEAFKQEDGS 664

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
                 G GLGL I + +    GG+  + S+  +G     ILP          +  E+
Sbjct: 665 TSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILPYRPAQKNDIHEEDEN 722


>gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 846

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   +       L  + E+  L              ++ AE  N AKS FLA+MSHELRT
Sbjct: 391 LQDRVLDLQHTSLQLEQERAKLT----RTAQDLSIAKEAAENANRAKSAFLATMSHELRT 446

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N +LG ++++    +     +  ++ +  I  SG+ LL ++N+ILDLS++EAGR EL 
Sbjct: 447 PMNGVLGMADLLLSGPL----TQEQRDGVTTIRESGECLLTILNDILDLSKLEAGRLELE 502

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
               S + ++   + +L+  A+EK + + +  +  +   + +D   +RQ++ NL+ NA+K
Sbjct: 503 PEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGHIPQRIMSDPTRLRQILFNLVGNAIK 562

Query: 382 FTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   G V V++   +           +++D G GI E  +P + T F Q   +I     
Sbjct: 563 FTPQ-GEVSVSLAARACDDPDTAELVFTVRDTGIGIPEAMLPRLFTRFQQADSSISRTYG 621

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G GLGL I + +     G   + S   +G      LP  RVL+    D   + 
Sbjct: 622 GTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRLPV-RVLSEGKADTQPAA 673


>gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1691

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 13/292 (4%)

Query: 202  YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRAEEENLAKSRFLA 254
            Y    + +     L  +  ++ L  ++ +  +  +         +  AE  N AKS FLA
Sbjct: 1261 YHGEVVRRRIHSQLELKRHRERLEKQVRMRTAELELATREAELRKDEAEAGNRAKSEFLA 1320

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
             MSHE+RTPLNAILG  E++    +        +  +     +G+ LLNL+NE LDL++I
Sbjct: 1321 IMSHEIRTPLNAILGTHELLSESALSS----EQQRLMEISRNAGELLLNLVNETLDLAKI 1376

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
            EAG+ +L  +   L  +V E   + ++ A+ K + +  ++   +   V  D   +RQ+++
Sbjct: 1377 EAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMALEVPRFVMGDPDRLRQILV 1436

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NLLSNA+KFT   G V + +        +  + D G GIA   +  +   F Q   +   
Sbjct: 1437 NLLSNAIKFTNS-GTVSLQMSRGVADRTFFKVSDTGVGIAAHSMEKIFHPFTQADTSTTR 1495

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
               G GLGL I + +    GG   + S++  G      LP  R  + + E +
Sbjct: 1496 KFGGTGLGLTICKHLCEAMGGDIQVESQVGVGSTFSVNLPLPRAESSMDEPS 1547



 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +      +ET   AE  + AKS F+A+MSHE+RTP+NA+LGF+++     + P   
Sbjct: 379 ITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALRGDLSP--- 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+     +   L+ +IN+ILD S+++ GR EL      L  ++     +   +A 
Sbjct: 436 -KVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAA 494

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQ 401
           +  +++      + + V + D   + Q+ +NL+ NAVKFT   G + V        G   
Sbjct: 495 DHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFT-KNGFITVRAQPELLEGHRV 553

Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +  S+ D+G GI   ++P +   F Q   +      G GLGL I + +++   G     
Sbjct: 554 RLTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAE 613

Query: 460 SKLREGVEVIAIL 472
           S+  +G +    +
Sbjct: 614 SEPGKGSQFHFEI 626


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
          Length = 1325

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL D++     ++ L+AQ
Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + ++        Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQINEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 699

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 23/384 (5%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
              +     G    ++  +    +      +   A +++ L+   +              
Sbjct: 196 RFPIPDFLGGTPLAVIVEIPHDGYQSMLYAVLLVALIMVVLTSITVFVINCR-------- 247

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
                   Q ++   +  +  A                L +  +  L+   + + ++  +
Sbjct: 248 -------IQPMLFGRLRLVHNAVRSIARGGALDQRVPVLGRDEIGALA--EDFNAMVDSI 298

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A++   + R +AE+ +  KS+FLA++SHE+RTP+ AILG++E++   ++   +    +
Sbjct: 299 HHAQTQLAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATDK---R 355

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  +G  LL LIN++LDLSRIEAG+    +   S   ++ E I  LQLRA EK+I
Sbjct: 356 RYLTIIQHNGDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDI 415

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIK 406
           ++       L  +V  D   +RQ+++NL+ NAVKFT   GRVHV V W     +  +S++
Sbjct: 416 DLRIHYLTDLPPTVSGDAFRLRQILVNLIGNAVKFTER-GRVHVGVNWDEEASRLNVSVE 474

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+EGE+  +   F Q   +      G GLGL IA+ +     G   + S L +G 
Sbjct: 475 DTGIGISEGELSRIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGS 534

Query: 467 EVIAILPNTRVLNFIPEDNHESTQ 490
             +  +P  R  + + +   +   
Sbjct: 535 CFVLDIPLVRACDTVSQTAGDRPD 558


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
          Length = 1342

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 594 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 650

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 651 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 709

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 710 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 768

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 769 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 828

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 829 SEEGKGSTFEFS 840


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 1121

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 18/314 (5%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            ++    L           L+               +L    E   L  +     + + E
Sbjct: 413 RMIMGIPLKSGSQVTGVLGLACHRETDQTFSDEEKALLERFGELASLALDNAKLYAEASE 472

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R  AE  N AKS FLA+MSHE+RTP+N ++G + ++    +    NE  +E+   I  S
Sbjct: 473 ARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDTPL----NEEQREFCETIRGS 528

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ LL +IN+ILD S+IEAG+ EL      L + +   + ++   AQ+K +E+   +D  
Sbjct: 529 GEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVDKQ 588

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----------YISIK 406
           +  ++  D   +RQ++LNLL+NAVKFT   G + +TV    G               S+ 
Sbjct: 589 VPATIAGDVTRLRQILLNLLNNAVKFTEQ-GEISLTVRGEDGPDAAALPPGSMLLRFSVA 647

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LRE 464
           D+G GI    +  +  SF Q   +      G GLGL I++ +    GG+  + SK    +
Sbjct: 648 DSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVESKGVPGK 707

Query: 465 GVEVIAILPNTRVL 478
           G     ++    V 
Sbjct: 708 GSTFHLLIRTEPVA 721


>gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
          Length = 470

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 101/263 (38%), Positives = 157/263 (59%), Gaps = 1/263 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +   ++++   A     E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+++ E+
Sbjct: 205 YKNAKMLSKQYNANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAES 264

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           MG + N  YKEYI DIH +G HLL+LIN+ILD S+ EA +  +      L  ++  C  M
Sbjct: 265 MGAIENVHYKEYINDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNM 324

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397
           +  RA+E  + + Q +  +   + AD K M+QVI+NLLSN++KFT   G V + V +   
Sbjct: 325 ILPRAEEAKVRLEQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLE 384

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I + DNG GIA+ ++  V++ FGQ         +G GLGLP+++ ++    G F 
Sbjct: 385 NSMIVIEVIDNGIGIAQQDLYKVMSVFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFK 444

Query: 458 IRSKLREGVEVIAILPNTRVLNF 480
           I+S+   G  V  + P T  L  
Sbjct: 445 IKSEPNLGTIVTLMFPYTNTLEE 467


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++ AE  + AKS F+A+MSHE+RTP+N I+G +++     +        +EY+  +  S
Sbjct: 1336 AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTA----EQREYLSMVQSS 1391

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               LL +IN+ILD S+IEAGR EL ++  SL   + + +  L  RA +K IE+   I   
Sbjct: 1392 AGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASD 1451

Query: 358  LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY--ISIKDNGPG 411
            +  S+  D   +RQ++ NL+ NA+KFT+  G V + V               S+ D G G
Sbjct: 1452 VPDSLIGDPGRLRQIVNNLVGNAIKFTSQ-GEVDLVVKVEKSLSCGEVVLKFSVIDTGIG 1510

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I + ++  +  +F Q   +I     G GLGL I+  ++    G+  + SK  +G      
Sbjct: 1511 IPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFT 1570

Query: 472  --LPNTR 476
               P + 
Sbjct: 1571 AQFPTSP 1577


>gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 789

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 9/285 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   ++++ +       +K  L   +        +  +  +  N AKS FLA+MSHELR
Sbjct: 371 HLAVAIYQAQLYA-QLHQQKSSLEQRVIERTQELRDALQATQAANHAKSEFLAAMSHELR 429

Query: 262 TPLNAILGFSEVIELETMGP-----LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           TPL  ++G S  +   ++G      ++ E  + Y+  I  +G+HLL LIN+ILD S++EA
Sbjct: 430 TPLTCVIGLSATLLRWSLGEGGSKTVSIEKQRRYLQTIQENGEHLLALINDILDFSQLEA 489

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILN 374
           G+  L+ +  SL  + ++ +  L+ +A    +E+              AD + +RQ++ N
Sbjct: 490 GKAVLNINEFSLRYLAQQTLRSLKEKASSGQVELILDWQVPTPKDRFQADPRRLRQILFN 549

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LL NA+KFT  GG+V +  GW         I+D G GI + +IP +   F Q     +  
Sbjct: 550 LLGNAIKFTPAGGQVTLR-GWREQNRAVFQIEDTGIGIPQEQIPLMFQKFQQLEKTYQRT 608

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +G GLGL + Q ++  HGG   + S + +G      +P   V+ 
Sbjct: 609 YEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTVRVPIQSVVP 653


>gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 508

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 108/342 (31%), Positives = 160/342 (46%), Gaps = 4/342 (1%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +   A   +   + A +         +    +       A++  + L  SL   +    +
Sbjct: 171 LVNRAEADMLAQVDAGAAGYARSRALV--LSIAAGSVVLALLLGYALSWSLVEPVREMDA 228

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               I    F+  + I + + E   L A+L    +      +  E  N  KS FLA+MSH
Sbjct: 229 RLAEIAAGQFERRIDIPN-RDELGALAADLNRMSAELGRLVREVEAANRNKSAFLANMSH 287

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAI+GFSEV+  +  G + N    EY+ DIH SG HLL LIN++LDLS+IEAGR
Sbjct: 288 ELRTPLNAIIGFSEVLIEQMFGEV-NAKQLEYLRDIHASGHHLLTLINDVLDLSKIEAGR 346

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            EL  S   L +++   + +++ RA    + +   +   L    AD + ++QV++NLLSN
Sbjct: 347 MELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPRKIKQVVVNLLSN 406

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT  GG V +           I++ D G GIA  E   V   F Q         +G 
Sbjct: 407 AVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQAGTDPLRKSEGT 466

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GLGL +A+  +  HGG   + S    G      LP+  +   
Sbjct: 467 GLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLPDRTLEPT 508


>gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 1049

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 101/343 (29%), Positives = 161/343 (46%), Gaps = 23/343 (6%)

Query: 152 SALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
              S+  LP  V      V    +L+     +  +  +         +   + +   L +
Sbjct: 428 GVQSSLSLPLLVGGEVLGVFFLDSLTAGTYAAHDIERLLPLADQVAIVVKHSRLWGSLQR 487

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
              ++     E+    A ++ AKS+       AE  + AK  FLA MSHE+RTPLNAI+G
Sbjct: 488 HTEELRREVEERKRAEAAMQQAKSV-------AEAASRAKGEFLAKMSHEIRTPLNAIIG 540

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +E+     +        +E++  +  S + LL +IN+ILDLSRIEAG+  + E+A  L 
Sbjct: 541 MTELTLDTALTT----EQREFLQVVQSSSEALLTVINDILDLSRIEAGQMAIEETAFHLR 596

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           ++V     +L +RAQ+K +E+   +DP+L   V  D   +RQV++NL+ NA+KFT   G 
Sbjct: 597 EVVEGVAEVLSIRAQKKGLELTCYVDPALPSRVLGDPMRLRQVLVNLVGNAIKFTER-GE 655

Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V  T        G +IS+ D G GI   +   +   F Q          G GLGL 
Sbjct: 656 VTIQVERTQVEAPGRIGVHISVADTGIGIPTHQQARIFDPFAQADATTARRFGGSGLGLS 715

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I++++M   GG+  + S++ +G      L    V    PE   
Sbjct: 716 ISKALMELMGGRIWVESEVGKGSTFHCDL---VVTVAEPEAET 755


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
          Length = 1316

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 152/320 (47%), Gaps = 16/320 (5%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAE 227
           V + L   A  S    +         +++    +        +   + + E        +
Sbjct: 626 VTIGLIALANASEGFTETDRTTAEDLSVALAEALQRKKADQALHAFNAELEERVRARTTD 685

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           LE A +  +E +  AE  N  KS FLA+MSHE+RTP+NAILG   +I+   +    +   
Sbjct: 686 LEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTHL----SAKQ 741

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             Y+  +H S + LLN+IN+ILD S+IE+G+ +L ++   +   +R    +L L AQ+K 
Sbjct: 742 ANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKG 801

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQY 402
           I +   +D +       D   +RQV++NL+ NA+KFT   G + VT   T    +     
Sbjct: 802 IVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFT-EHGHIQVTQRLTQWVEAQAECI 860

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             ++D GPGIA G+   +  +F Q   +      G GLGL I++ ++   GG+  ++S  
Sbjct: 861 FEVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTP 920

Query: 463 REGVEVIAILPNTRVLNFIP 482
            +G      +    VL+  P
Sbjct: 921 GQGSRFTFRV----VLDVPP 936


>gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 676

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 182/377 (48%), Gaps = 9/377 (2%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              L      G+   +   V         + + +SA  ++ L  + ++   +  ++F++ 
Sbjct: 296 RLSLQADRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMAL 355

Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                    +    +              +          +           L       
Sbjct: 356 LAANDTPPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRSSSMPGGGLILSFTD- 414

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + +  +    E +  AE  N AK+ FLA++SHELRTPLNAI+GFSE+++ E  GPL
Sbjct: 415 --VTDRKRVEQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPL 472

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              +Y+ Y+ DIH SG HLL LIN+ILD+S+ EAG  +L E+A+ + D+VR  I +L  R
Sbjct: 473 EPASYRTYVDDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLLTRR 532

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+   I + + + P+L  + ADE+ +RQVILNL SNAVKFT  GG V +    T      
Sbjct: 533 AENAGITLSEDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAKVTEAGFI- 591

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I++ D G G+   E+  V+  F Q    +    +G GLGLP+A++++  HGG   + S+ 
Sbjct: 592 ITVADTGIGMTPEELLRVMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLDSQP 651

Query: 463 REGVEVIAILPNTRVLN 479
             G       P +R+++
Sbjct: 652 GRGTVATVTFPPSRIID 668


>gi|83312294|ref|YP_422558.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947135|dbj|BAE51999.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 601

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 190/468 (40%), Gaps = 23/468 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI---FPMWSLITLAVYAANL 87
              D  +    V  L R  P   L    +A +               W+   +AV A  L
Sbjct: 6   ASIDTRVRAEQVRVLARNLPFTALTGTAIALLAALGAAPVAGEMVWWWAGAFVAVAALRL 65

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
           ++ +       +      W  ++    +  GL W +  L         +          +
Sbjct: 66  AMLRFYWTVADRDRRPDFWGPYMAFNLLLSGLMWLIFGLAAFDAHDAGHALFIAVILTGL 125

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             +  A  +   P  +     P +        +S   +   LA M A  L   T      
Sbjct: 126 TAASLASLSAYFPGQM-AFALPTIAGFVIPVALSGERVMTILAVMAAVFLVVVTLSCRAA 184

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  V+ +  + E + LI +L  A + ++         N AKS FLA MSHELRTP+ +I
Sbjct: 185 ERVLVQSIRLRFENERLIGDLRRAGAEAE-------AANRAKSDFLAVMSHELRTPIASI 237

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LGF ++              +  +  + R+G+HLL ++++ILD+SRIEAG+Y L  +  S
Sbjct: 238 LGFVQL----AGMAPTLARARAILPKVGRAGRHLLAIVDDILDISRIEAGKYALDLAPFS 293

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           L +++     + +  A+EK +E+  +      ++   D   + Q+++NL+ NAVKFT+  
Sbjct: 294 LDEMLGHVEDLTRPLAEEKGVELSLQHSDDAPALLVGDALRLGQILINLVGNAVKFTSR- 352

Query: 387 GRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G VHVTV         +     + D+G GI    +  +   F QG  +      G GLGL
Sbjct: 353 GAVHVTVRTMPIDEISLLLECEVADSGIGIPADRLEAIFEPFTQGDGSTTRRYGGTGLGL 412

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + ++++   GG+  + S+   G            +   P+   E+T+
Sbjct: 413 SVCRTLVEMMGGEITVESQPGRGSVFRFS--ALLGVAGAPQAQTEATE 458


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 149/338 (44%), Gaps = 22/338 (6%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I+    L + +    L    L  +         +A    A+  + + +     + +    
Sbjct: 174 IWLQVWLALVVFAGGLGLAFLLASRLHRLISEPIARVAVAMERITLDEDYGVRLGSIGTD 233

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +T                 D ++  +E   +   E R  AE  N AKS FLA+MSH
Sbjct: 234 ELATLTRAF--------------DAMLERIEQRDAELREARDAAERANRAKSHFLANMSH 279

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N I+G +E+++   +    N   ++    I  S   L+ +IN+ILD+SRIEAGR
Sbjct: 280 EIRTPMNGIIGMTELLQETDL----NAAQRDCTRVIQDSAAALMRIINDILDMSRIEAGR 335

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            EL        + +   +  L+  AQ K +E   ++DP L   +  D   +RQ++ NL+S
Sbjct: 336 LELERLDFDPRESIERTLEPLREIAQRKGLEFAIELDPELPARLRGDPGRLRQILTNLVS 395

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G   V +     +       I+++D G G++  E   +   F Q  ++ +  
Sbjct: 396 NAIKFTEQGRVSVTLDCLERTDDWVRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRR 455

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I++ ++   GG   + SK   G      L
Sbjct: 456 YGGTGLGLAISRQLVELMGGGIDVESKPGLGSVFRVEL 493


>gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 467

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 5/330 (1%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            +++ A    +L   V    F + +A S    +   + +  L  +L  AL     +   +
Sbjct: 132 VIAMDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYDLEKLLNQALETGRCMQKQI 191

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLN 265
                +    Q     L         +    R   E       +S F+A++SHELRTPL 
Sbjct: 192 QILAPEPRVFQVHVIPLQNSGAERGGVVALLRDITERKILQEMRSEFVANVSHELRTPLT 251

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I GF+E +    +     +T + ++  I+   + L  LI+E+L+LSR+E+ ++      
Sbjct: 252 SIRGFAETLLDGAL--EEPDTARRFLEIINSETERLSRLIDELLNLSRLESHKWVPKRQP 309

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +++ ++++  + +LQ RA EKN+ I   +   L  V  D   + QV+LNL+ NAV +T  
Sbjct: 310 VNMGELIKRAVAILQPRAVEKNLAIKINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQA 369

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V ++   T    + + +KDNG GI    +  V   F +   A    + G GLGL I 
Sbjct: 370 GGEVSISAAATQDEMK-VDVKDNGIGIPPESLSRVFERFYRVDKARSREQGGTGLGLSIV 428

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + I+  H G   + SK+  G     ++P  
Sbjct: 429 KHIIDAHRGSVQVESKVGIGSTFSFVIPLE 458


>gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica]
          Length = 776

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 158/362 (43%), Gaps = 27/362 (7%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +                 L+I L  ++L  + L   V     P+   + T   +    L+
Sbjct: 165 LRAAHLQRYKDIAIFILLLVICLGGASLFAYYL---VRKITEPISEIVRTVDRIRQGQLN 221

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLS 235
             ++G           +   +      + S + E    I            + E+     
Sbjct: 222 SRVSG---KYFGELDTLKNGINAMAKSLSSYKEEMQHDIDQATSDLRETMEQFEIQNVEL 278

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +KRA+E    K+ FLA+MSHELRTPLN ++GF+     +T+         EY+  I 
Sbjct: 279 AIAKKRAQEAARIKTEFLANMSHELRTPLNGVIGFT----RQTLKTSLTIQQTEYLHIIE 334

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RS  HLLN+IN+ILD SR+EA +  L      L + + E I++L   A+ KNI++   ID
Sbjct: 335 RSANHLLNIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHSID 394

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGP 410
           P + + V  D   ++Q++ NL+ NA+KFT   G V + +     +   I    ++ D G 
Sbjct: 395 PQIPNLVIGDPMRLQQILTNLIGNAIKFTEQ-GSVKIDINLVQQQHHKINLAMTVSDTGI 453

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+  + P +  +F Q   +I     G GLGL I Q ++   GG     S+  +G     
Sbjct: 454 GISPEQQPHLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTSEQGKGSVFHF 513

Query: 471 IL 472
            L
Sbjct: 514 DL 515


>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
 gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1480

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 162/401 (40%), Gaps = 17/401 (4%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
               ++++     +      +  + IG+ W           +  ++   +    L+  S  
Sbjct: 747  ARTAEVREAHARLQITQFAMDSVGIGIQW-------IDPDSGRFVYANRHTAELLGYSEQ 799

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
             +    +         P   A   +   S +    S                Y++     
Sbjct: 800  EMLTLTVSDIDPAFPLPAFHATMARLRQSRYTQFQSQIETRGGVPIPVEITLYYMEGDAD 859

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                  A   D I+  +  +    + ++ AE+ NLAK+ F+A+MSHE+RTP+NAILG   
Sbjct: 860  APARVIAFLTD-ISRRKETEQTLVQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVY 918

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++    +    +   +  +  I RS +HLLNLIN+ILDLS+ + G+ +L+ S   L  + 
Sbjct: 919  LLSQGRL----SAQQQHQLDTIDRSARHLLNLINDILDLSKADVGKLQLALSDFDLARLP 974

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             + + ++  +A+ K +++  + D     V  D   + Q +LNLLSNAVKFT   GR+ ++
Sbjct: 975  ADVMGLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLSNAVKFTER-GRIAIS 1033

Query: 393  VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +               ++D G GI     P +  +F Q   +      G GLGL I + +
Sbjct: 1034 LSIDGEDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTRRYGGTGLGLAITKRL 1093

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                GG   + S   +G          R      +   + T
Sbjct: 1094 AELMGGAVGVESAPGQGSLFWFTARVARSGQAAADQYPQQT 1134


>gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/272 (33%), Positives = 139/272 (51%), Gaps = 23/272 (8%)

Query: 225  IAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            IAE    + L++E +K A+     N AKS FLA+MSHELRTPLNAI+G+S++++ +    
Sbjct: 852  IAEDITQRKLAEEFQKVAQSAVAANQAKSAFLANMSHELRTPLNAIIGYSDLLKEDAED- 910

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            L  E +   +  I R+G+HLL LI++ILD+S+IEAGR EL     + +D++ E I  ++ 
Sbjct: 911  LGAEEFISDLDRIQRAGKHLLGLISDILDISKIEAGRMELYLENFNPVDLIEEVIATVEP 970

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
               + + ++      +L  ++AD    RQ++LNLLSNA KFT   G + +T+      G 
Sbjct: 971  LVMKNSNKLEVSFGSNLDEMYADPTKTRQILLNLLSNAAKFT-KDGTITITLTKDEKVGN 1029

Query: 401  -----------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                                 + D G G++  ++  +   F QG  +      G GLGL 
Sbjct: 1030 EEIFNGDIESEGDYLCFLLFQVADTGIGMSATQLEHLFQPFMQGDTSTTRQYGGTGLGLA 1089

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I++      GG   + SKL  G      LP  
Sbjct: 1090 ISRHFCLMMGGDIEVESKLGSGSVFTVRLPVK 1121


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 594 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 650

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 651 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 709

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 710 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 768

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 769 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 828

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 829 SEEGKGSTFEFS 840


>gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1514

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/263 (34%), Positives = 155/263 (58%), Gaps = 3/263 (1%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
              L  +  ++ L   +E+     ++ +++A+  +L KS FLA+MSHELRTP+N+I+GF+ 
Sbjct: 1252 SELELEIYRNKLEDLVELRTLELEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTG 1311

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++  +  GPLN+E  K+ +  +  SG+ LL+LIN+ILD+S+IEAG+  ++ SA   ++I+
Sbjct: 1312 ILLKQLAGPLNDE-QKKQLTMVKSSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEIL 1370

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             + I  L  +A++K ++I  +I      + +DE+ + Q++LNL+SNA+KF+   G + + 
Sbjct: 1371 EKTIAFLTPQAEKKGLKIKTEISNFDIVIESDERRVEQILLNLISNAIKFSNK-GIISIK 1429

Query: 393  VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            V    G      I D G GI    I T+   F Q    +    +G GLGL I++S++   
Sbjct: 1430 VKL-EGNFVITKIIDQGIGIEAKHIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKL 1488

Query: 453  GGQFLIRSKLREGVEVIAILPNT 475
            GG+ L++S+L EG      LP  
Sbjct: 1489 GGEILVKSQLGEGSTFTFKLPLK 1511


>gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 605

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 187/378 (49%), Gaps = 12/378 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----------- 171
           +  ++           I  +A  L+ + +S L    L   V ++  P             
Sbjct: 209 MCDVISRHRRNGAVQFISPAAESLLGVPVSELQGHGLFDRVHVADRPAYLTALAAAALGK 268

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A S +  +       +      +    +  +     + +             + + +  
Sbjct: 269 GAQSVEFRLRRDAASDAEFEGHPSGNFIWVEMRCQPLEPSSPAEPEVVAVMRDVTDRKQQ 328

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   D  R  AE  + AK+RFLA+MSHELRTPLNAI+GFS++I  E   PL+    KEY 
Sbjct: 329 EHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMIVQEATLPLDATRRKEYA 388

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ SGQHLL+++N ILD+S++E+G +E+     +  +++     +L L+A++ +IE+ 
Sbjct: 389 QLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKARDNDIELV 448

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            ++  +L  +  D +  RQ++LNL+SNA+KFT  GGRV ++     G    + + DNG G
Sbjct: 449 TRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISA-RVEGARMVLRVVDNGVG 507

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA+ ++  +   F Q     +   +G GLGL I +S++  HGG+  ++SK+ EG  V  +
Sbjct: 508 IAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEEGTTVTVM 567

Query: 472 LPNTRVLNFIPEDNHEST 489
           LP T +    P  N+ +T
Sbjct: 568 LPLTLMPAAEPPSNNIAT 585


>gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 807

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 3/254 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E ++ ++L  E ++ AE  N  KS FLA+MSHELRTPLN+I+GFS+++  +  G L
Sbjct: 556 RDITEKKITENLLHE-KQMAEFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGEL 614

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+     I +I  SG+HLLNLIN ILDLS+IEA + EL      L   +     +L   
Sbjct: 615 -NQKQLRAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPI 673

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A +KNIEI   +D S+S + ADE    +++ NL+ NA+KF+     V +      G    
Sbjct: 674 ADKKNIEIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKIGT-RKKGELVE 732

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I+++D G GI   +   +   F Q +       QG GLGL + + I+  HGG    +S+ 
Sbjct: 733 ITVEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQ 792

Query: 463 REGVEVIAILPNTR 476
            +G      +P T+
Sbjct: 793 GKGSTFAFAIPITK 806


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 8/263 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +  + +    E ++ AE  N  KS FLA+MSHE+RTP+N ++G + ++    +   
Sbjct: 437 RDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKL--- 493

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  + +   I  SG+ LL +IN+ILD S++EAG+ +L  +   L+ +V   + +L  R
Sbjct: 494 -TEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPR 552

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR- 399
           A  K IEI   IDP L   V +D   +RQV++NL  NAVKFT  GG  + VT+    G  
Sbjct: 553 AHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQ 612

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +  ++D G GI       + + F Q   +      G GLGL I + +    GG+  +
Sbjct: 613 PMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGL 672

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S+  +G      +P   +    
Sbjct: 673 ESQPGKGSRFWMSVPMELLAPQS 695


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1202

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 10/282 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +       + +   K     A     I++ +  +    +    AE  N +KS FLA+MS
Sbjct: 491 VWILSSGRVIERDEEKRALRMAGIHKDISDRKRVEDELKKAMLDAESANRSKSEFLANMS 550

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ++G  E++    + P      + ++     S + LL +IN+ILD S+IEAG
Sbjct: 551 HEIRTPMNGVVGMMELLSNTELTP----EQQSHMRTARNSAESLLTIINDILDFSKIEAG 606

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + EL E A  L ++V +   +L  R   + +E+       L   V  D   +RQV++NL+
Sbjct: 607 KLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADLPMQVAGDPTRLRQVLVNLV 666

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NAVKFT  G   V +TV         +   ++D G GI E   P +   F Q   +   
Sbjct: 667 GNAVKFTPEGEVEVRMTVERQDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTR 726

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILP 473
              G GLGL I++ ++   GG+    S + +G         P
Sbjct: 727 RFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFP 768


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 175/452 (38%), Gaps = 17/452 (3%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV- 103
           L  +  I+ +   L+    +         +W +  +  Y+     G    ++        
Sbjct: 210 LLVMGTIVMIIADLILAYQSLNNIYDSGGIWDVGWIMAYSMIGLAGILQASTSPSDAPPF 269

Query: 104 ------YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157
                        +    +     + +       + P          L+ +       + 
Sbjct: 270 QKVPSEEPAYARTVASSASPYALDSGMVRFPGAHYIPYIFVAGAYIILIWSFDRPLAIST 329

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
                       ++V     A+     L  +             ++   +      + + 
Sbjct: 330 PHLSYSVGGIIGLIVIRQIVALKENERLFQTSKRAEEEVRRLNQHLESRVMDRTAMLKAA 389

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             + ++ I E +  +     +++ AE    AKS FLA+MSHE+RTPLNA++G + ++   
Sbjct: 390 NRKLEEDILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGIL--- 446

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +G   N   ++++  I  SG  LL +IN+ILD S+I++G+ EL      +   + + + 
Sbjct: 447 -LGTDLNREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVD 505

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++   AQEK + +   I+ S+   + +D   +RQ+++N+L NAVKFT+  G V + V   
Sbjct: 506 LMAPVAQEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSS-GEVRILVSGR 564

Query: 397 S----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                    + ++ D G GI   ++  +  SF Q          G GLGL I++ ++   
Sbjct: 565 DLGGREHEIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELM 624

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            G     S+  +G      +     L+  P +
Sbjct: 625 DGSIWAESEEGKGSTFHFTIKAMEALSPPPGE 656


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1331

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 752

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 16/279 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E+   +    E ++ AE  + AKS FLA+MSHELRTPLN I+G SE++    +      
Sbjct: 341 EEIHAYQERLKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG---- 396

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              EY   I  +G++LL LIN+ILD+S++E+G+ ++      L  ++      L  +   
Sbjct: 397 ELVEYARTIQTAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIH 456

Query: 346 KNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K++    ++   + +V   DE  + QV+ NL+ NA+KFT+  G V + V           
Sbjct: 457 KSLRFVLEVASEVPAVVVSDEARLSQVLFNLVGNAIKFTSR-GEVVLRVWMEEAEEGRAK 515

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               ++D G GI   E+P V   F Q    +    QG GLGL IA+ ++   GG+  + S
Sbjct: 516 IVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVES 575

Query: 461 KLREGVEVIAILPN------TRVLNFIPEDNHESTQYKC 493
           +  +G      +P        RVL F+ +   E  +++ 
Sbjct: 576 EEGKGSCFTVRIPFQVPVSSARVLPFVRDGLEEKVEWRG 614


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+       + +  A+  N AKS FLA+MSHE+RTP+NAI+G S++     +    +
Sbjct: 1013 ITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----D 1068

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + YI  I R+ + LL +IN+ILD S+IEAG+ ++      L  ++ +   M  ++A 
Sbjct: 1069 AKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKAS 1128

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
            +K +E+   + P++   +  D   + QV++NL++NA+KFT   G V +++          
Sbjct: 1129 DKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQ-GEVLLSISQLERVEDDI 1187

Query: 401  Q-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S++DNG G+ E +   +  SF Q   +      G GLGL I++ ++   GG+  + 
Sbjct: 1188 VLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVE 1247

Query: 460  SKLREGVEVIAI 471
            S+   G      
Sbjct: 1248 SQFGNGSTFFFS 1259


>gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 710

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 110/446 (24%), Positives = 188/446 (42%), Gaps = 21/446 (4%)

Query: 36  EIITLHVESLFRVSPILPLFVLLV-----ANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
           E       S+        L   L+     A     +    +   W  +T     A+L + 
Sbjct: 131 EKAIAFWLSMRACGAFGLLVAALLPWRRFATPLGHWLAMAVVLAWVAMTYWGALAHLEIL 190

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +   S   +    V    +LV          L   +              SA+ ++ L+
Sbjct: 191 PRTFISGQGLTPFKVVAEAILVLVYL------LAAFLFWHAANLPNARWLASASWVMGLA 244

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            +    +  P+ ++     + + ++   +             ++T    +  +     + 
Sbjct: 245 GAYFCLYDDPFDIYNQVGHLYIVIAYALLYQG--------LFISTIRDPYVRLQQAQDEL 296

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +++    E  D +  LE  +   ++ +  A+  N AKS FL+SMSHELRTPLNA++GF
Sbjct: 297 ENRVVERTRELHDALISLERQQHDLEQAKLGADRANQAKSEFLSSMSHELRTPLNAVIGF 356

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++  E  GPL NE     +  I R GQHLL LINE+LDL+RIE G+  LS   I  + 
Sbjct: 357 TQLLRTERPGPL-NEKQAGQLDHILRGGQHLLELINEVLDLARIETGKLSLSVEVIDPVV 415

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++ EC+   +  A+E+ +EI +     +  +  D    +Q++LNL+SNA+K+    GRV 
Sbjct: 416 VMNECLAFGRAYARERGVEIGEWQGGPVLPISVDYTRFKQILLNLISNAIKYNRADGRVT 475

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +T           SI D GPGIA  +   +   F +   A     +G G+GL I + ++ 
Sbjct: 476 LTAQPWGTGMMRFSIADTGPGIARDKQAHLFEPFNRL-GAESRDVEGTGIGLTITKRLVQ 534

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
              G     S+  +G       P  R
Sbjct: 535 AMNGLIGFHSQEGQGSVFWIDFPIAR 560


>gi|313113960|ref|ZP_07799516.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623723|gb|EFQ07122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 780

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L  A +++     +      I+ +  +  S+  +              L       L 
Sbjct: 288 AFLVPAKYVAVNTQKLVSIVMIIIIVIAMVFSVITVFVGWFLLRQKQQQELQAEKEANLR 347

Query: 217 CQAEKDDLI---AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +     L     EL  A+ ++ E  + AE  + AK+ FLA+MSH++RTP+NAI+G + +
Sbjct: 348 LEQYNIHLTQVNDELRQAQDIAAEALQSAERASKAKTDFLANMSHDIRTPMNAIIGITTL 407

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ E       E   E++G +  SGQ LL +IN+ILD+SRIE+G+  L+   ++L   + 
Sbjct: 408 MKNEL---HQPEKLAEHLGKLENSGQLLLGIINDILDMSRIESGKTTLNVEKMNLPQQIS 464

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   +++ +A ++             +V AD   + +V++N+LSNAVK+T  GG +   V
Sbjct: 465 QLDSIIRQQAGQRRQTFTVNTHLQHENVLADPNRLNRVLMNILSNAVKYTPTGGHIRFEV 524

Query: 394 GWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                   Y      ++D+G G+++    T+   F +   +  +  QG GLG+ I ++I+
Sbjct: 525 DELPRNEHYARYRFVVQDDGIGMSKAYQKTLFDPFTREERSGTNKVQGTGLGMAITKNIV 584

Query: 450 ANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPEDN 485
              GG   + S   +G     +L  P     + +PE  
Sbjct: 585 DLMGGSINVESTTGKGTRFEVVLEFPVDAEADTVPEAQ 622


>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1196

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 7/373 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  + V     G+    +      ++TP  L    S +  I ++I    N          
Sbjct: 385 RNVVAVPVFRDGVVVGAMEFGALQSYTPLQLDFLNSISTNIGIAIHVSQNRKKLQEFLEE 444

Query: 167 FFPVVVALSTQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q      +     A    + T+          L +SN ++    +  ++ 
Sbjct: 445 TQAQAEELQAQHRELEGLNAELEAQTQRIQTSEEELRVQQEELLQSNQELEERTSLLEEK 504

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              ++          ++ E+    KS FLA+MSHELRTPLN+IL  S+++         +
Sbjct: 505 NQLIQERNLDIQHKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSEN---KELD 561

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           + Y EY   I  SGQ LL LI+EILDLS+IEAG+ +L  + +++ ++  +   +    A+
Sbjct: 562 KEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAK 621

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-I 403
            KN+++   ++  +S +  D   + Q++ NLLSNA+KFT+  G+V +TV           
Sbjct: 622 NKNLDLVIDVESDISGINTDRMRLEQILKNLLSNAIKFTST-GKVALTVKQDDAGKAILF 680

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   +   +  +F Q   + +    G GLGL I++ +    GG+  + SK  
Sbjct: 681 KVTDTGIGIPLDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTSKEN 740

Query: 464 EGVEVIAILPNTR 476
            G E    LP  R
Sbjct: 741 VGSEFTLALPVDR 753


>gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S FLA++SHELRTPL +I GF E +        +    K ++  I      L  L
Sbjct: 348 LEKLRSEFLANVSHELRTPLTSIKGFVETLLEGAY--KDPGLAKRFLSIIDAEAGRLYRL 405

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN ++DLS+IE  + +L    +S  +++ E II+ + R +EK ++    I   L  V AD
Sbjct: 406 INNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKAD 465

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              +RQV +NLL NA+K+T  GGRV +      G      + D G GI E ++P V   F
Sbjct: 466 PDWLRQVFINLLDNAIKYTQSGGRVWIEAEP-KGDVVEFRVCDTGIGIPEEDLPRVFERF 524

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A      G GLGL I + I+   GG   + S++ +G + I  L  ++
Sbjct: 525 YRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVNQGSKFIFTLKRSK 576


>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
          Length = 1328

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +S   E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 LTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL ++      ++  +AQ
Sbjct: 639 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + V+V          
Sbjct: 699 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 757

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KD G GI + +I  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 817

Query: 460 SKLREGVEVIAIL 472
           S +  G      +
Sbjct: 818 SAVGMGSTFTFTI 830


>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
           [Shewanella putrefaciens 200]
          Length = 1234

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++ P   
Sbjct: 698 ITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI++ +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+       + +  A+  N AKS FLA+MSHE+RTP+NAI+G S++     +    N
Sbjct: 1013 ITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----N 1068

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + Y+  I R+ + LL +IN+ILD S+IEAG+ ++      L  ++ +   M  ++A 
Sbjct: 1069 RKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKAT 1128

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
            +K +E+   + P++   +  D   + QV++NL+SNA+KFT   G V +++          
Sbjct: 1129 DKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQ-GEVLLSISQLERIEDDI 1187

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S++DNG G+ E +   +  SF Q   +      G GLGL I++ ++   GG+  + 
Sbjct: 1188 VLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVE 1247

Query: 460  SKLREGVEVIAI 471
            S+   G      
Sbjct: 1248 SQFGNGSSFYFS 1259


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  292 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3]
 gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 937

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 165/354 (46%), Gaps = 21/354 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  + G L 
Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 240 GELDLLKRGINAMAGSLSDYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++YI  I +S   LL +IN
Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYINTIEKSATTLLGIIN 355

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     +L +++ + I +L   A+EK+IE+   I+  +   +  D 
Sbjct: 356 DILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVDIESDVPEDLSGDA 415

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             + Q++ NL+ NA+KFT   G VH+ +  T    + +     + D G GI + +   + 
Sbjct: 416 MRISQIMTNLVGNAIKFTDQ-GSVHLKLQLTESNNEQVHLRCEVTDTGIGIDDSQKEVLF 474

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +FGQ   +I     G GLGL I + ++   GGQ    SKL +G      LP  
Sbjct: 475 QAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGSTFWFTLPLQ 528


>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1302

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 10/260 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I   +         R  AE    AKS FLA+MSHELRTP+N ++  + ++    +   
Sbjct: 897  RDITLRKKVHQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISMANILLDTDL--- 953

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +ET ++Y   I  SG+ LL L+N+ILDLS+ EAG+  +    + L +++ + + +L   
Sbjct: 954  -DETQRDYTSTIRDSGESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTT 1012

Query: 343  AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
            AQ+KNI++   +     ++   D   ++QVILNL  NA+KFT   G V + V        
Sbjct: 1013 AQQKNIQLETNVTDDTPTLLIGDAGRIKQVILNLTGNAIKFT-EDGHVKINVSKLEDTNK 1071

Query: 401  ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 I I+D G GI+E     +   F Q   +      G GLGL I++ I+    G+  
Sbjct: 1072 HVNIRIEIEDTGVGISETAASRLFRPFEQADGSHSRRFGGTGLGLAISKEIVELMDGEIG 1131

Query: 458  IRSKLREGVEVIAILPNTRV 477
            + S L +G      L   +V
Sbjct: 1132 VDSVLGKGSTFWFTLKLEKV 1151


>gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1068

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 17/271 (6%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A     + +K AEE + AKS FLA+MSHE+RTPLN I+GF+E+++   +    +E  +E
Sbjct: 369 KAIENIAKEKKNAEEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNSDL----DEEKRE 424

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  I +S ++LL +IN ILDLS++E+ + E+ ES  S ID     + +   +A EKNI+
Sbjct: 425 FVDVIEKSSENLLAIINNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQ 484

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403
           +   +DPSL   +  D   +++V++NL+SNAVKFT   G++ V +               
Sbjct: 485 LSLYMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLF 544

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D+G GI + +I  +  +F Q    I     G GLGL I+   +A  GG+  + S+  
Sbjct: 545 SVRDSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDVESEEG 604

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           +G     IL        +PE +   T YK +
Sbjct: 605 QGSRFFFIL-------DLPESSASGTDYKNH 628


>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
          Length = 932

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   V V +   +G    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 171/370 (46%), Gaps = 15/370 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             L  LV       + + +  + ++++ ++ +A+ N  L      +         + A  S
Sbjct: 709  ALPDLVLRLRPDGQVVDVVAAESMVLPMAPTAMINSTLEQLFPAAIATQYRQALSAAFAS 768

Query: 182  MHVLDISLAGMLATALSFF-------------TYITYHLFKSNVKILSCQAEKDDLIAEL 228
              +  ++   ++     FF               I   +       L+ Q E+D L   +
Sbjct: 769  GELQTLAYQLIVEAKEYFFEARIKAALPAEEAIAIVRDVTAWRNAELALQVERDLLAQRV 828

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                +               K  FLA+MSHELRTPLN+IL  SE +  E  GPL  +  +
Sbjct: 829  AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPL-RDQQQ 887

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + I  I  SG+HLL LIN++LDL++IEA R EL +  ++  D+    + +++ +A +K I
Sbjct: 888  KAIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQI 947

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKD 407
             +  ++D   +   AD + ++Q+++NLLSNAVKFT  GG V + V   T+      ++ D
Sbjct: 948  HLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSD 1007

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GIAE ++  +   F Q    +    +G GLGL + + ++  HGG+  + S    G  
Sbjct: 1008 TGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSR 1067

Query: 468  VIAILPNTRV 477
                LP   V
Sbjct: 1068 FTVTLPYQPV 1077


>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
           amazonensis SB2B]
 gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1236

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 10/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL KS FLA+MSH
Sbjct: 672 WMLSRGRVVEFTQDAQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++    ++     E  K+Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAGRTSL----TEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLS 377
            EL + A  L  ++   + +  LRAQEK IE+       +   +  D   + QV++NLLS
Sbjct: 788 LELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI+  +   +  +F Q   +   
Sbjct: 848 NAVKFT-QNGEIELGCEDVGERDHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I++ +++  GG   + S+   G      
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFT 944


>gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 607

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 3/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++ +  +  F+A++SHELRTP+ +I  ++E +    M   + ET K ++  I      + 
Sbjct: 377 QKLDSMRREFVANVSHELRTPITSIKSYTETLLEGAM--EDQETSKRFLCVIDSEADRMT 434

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR++  +       +SL  IV+  +  LQ+ AQ K+ ++   +   + ++ 
Sbjct: 435 RLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIPAIS 494

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD+  M QVI+NL+SN++K+T+  G + V VG       Y+ + D G GI    +P V  
Sbjct: 495 ADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYND-IYVKVTDTGIGIPSESLPRVFE 553

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ I+  HGG   I S++ +G EV   LP  
Sbjct: 554 RFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLPRE 606


>gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 927

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 2/243 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N +KS FLA+MSHELRTPLNAI+G+SE++E +      ++   + +  I  S +HLL LI
Sbjct: 422 NKSKSEFLANMSHELRTPLNAIIGYSEMLEEDAEDMGQDDFVPD-LQKISGSAKHLLELI 480

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N +LDLS++EAGR EL   +  +  +V+     LQ  A +++  I      ++ +++AD+
Sbjct: 481 NAVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQ 540

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +RQ + NLLSNA KFT   G V +T+   +G     SIKD G G+   ++  V  +F 
Sbjct: 541 TKVRQSLYNLLSNACKFT-ESGEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFT 599

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +      G GLGL I +  +   GG   + S+   G E    LP            
Sbjct: 600 QADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPRQVESESKASAP 659

Query: 486 HES 488
            +S
Sbjct: 660 AQS 662


>gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 828

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             L+      +E  + A+E+N AKS FLA+MSHE+RTP+N ++G + ++    +    +E
Sbjct: 293 EHLKELNVQLEEKSRIADEQNKAKSEFLANMSHEIRTPMNGVIGMTSLLRNTRL----DE 348

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +++  I  S   LL +INEILD S+IE+G+ EL E    L  IV E   +L  +AQE
Sbjct: 349 DQFDFVESIRISADALLEIINEILDFSKIESGKLELEEHPFVLSKIVEETYDLLSFKAQE 408

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K++++   IDP +   V  D   +RQ+I+NL+ NA+KFT   G +  ++     +G    
Sbjct: 409 KDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDE-GEILTSIKLLEKKGSTYE 467

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S++D+G GI + ++  +  SF Q   +      G GLGL I+  ++    G+  + S
Sbjct: 468 LEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRIWVES 527

Query: 461 KLREGVEVIAIL 472
           ++  G      +
Sbjct: 528 EVNVGTTFKFTI 539


>gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
 gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
          Length = 930

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 20/363 (5%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--------LA 190
           +     +++AL ++A+              P+   ++    +    L I+        L+
Sbjct: 175 LLTLFLVMLALIMAAMIPA--MRFSRQLTQPISEMVNAVHRIRDGDLSITIQTQAKSELS 232

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
            +          +     +    +     +  + +  +E+     D  RK A + +  KS
Sbjct: 233 ELETALQQMIAALADAQTELQKNVDQATLDLRETLETIEIQNIELDMARKEALKASHIKS 292

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPLN I+GF++++    +    +   +EY+  IH+S + LL +IN++LD
Sbjct: 293 EFLANMSHEIRTPLNGIIGFTKLLHRSPL----SARQEEYLSTIHKSAESLLAIINDVLD 348

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMR 369
            S+IEAG+  L  + ++L D++ +   +L   AQE+ +E           ++  D   +R
Sbjct: 349 FSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASIIYSDVPVALLGDPLRIR 408

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFG 425
           QV+ NLLSNA+KFT   G V V       RG      I++ D G G+++     +  +F 
Sbjct: 409 QVLTNLLSNAIKFT-DHGSVVVRAMLEEDRGAEAIIKITVTDTGHGLSQENQKNLFRAFT 467

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   + +  E G GLGL I++ ++ + GG+  I S    G      L   R      +  
Sbjct: 468 QTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGSTFWFTLRTERAPQQPVQAL 527

Query: 486 HES 488
            E+
Sbjct: 528 SEA 530


>gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 773

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 180/461 (39%), Gaps = 29/461 (6%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
           +     E       IL   V    ++  +         +S+    + +    +G      
Sbjct: 199 LTRRQPEDFLYALFILGNLVYNSTSLNVFSDVFGWTSFYSIGFPIMASNMAYIGFVWRLL 258

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS- 155
            I      V         I +G  W ++  +   +       +   A   I+  I     
Sbjct: 259 GINRYRTPVLFRISQGALIVMGSFWLIVPFMPEMSLEFARYGVGMFALYGISSGIVMALK 318

Query: 156 ----NFMLPYAVFLSFFPVVVALSTQAIMSMHVL--DISLAGMLATALSFFTYITYHLFK 209
                     A      P ++++   ++ +  ++   I L  +    +     I+Y L  
Sbjct: 319 GHHIARYYLIANVAFIIPALISIGLNSLPNSTLMIEHIGLFAVAIEVILLSLVISYQL-- 376

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                L  + +  +LIA        ++E    A+    AK RFLA++SHELRTPLNAI G
Sbjct: 377 ----SLVYKEKSANLIA--------AEEALTIADNAVRAKERFLANVSHELRTPLNAIQG 424

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++   +     +E+ KE I  I  S   LL LIN+ILDL+++ A    + E   +L 
Sbjct: 425 SVDLLSHSS----QDESLKEPIDMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPFNLH 480

Query: 330 DIVRECIIMLQ-LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +++   +     A          I P +   +  DEK + QVI NLLSNA KFT   G
Sbjct: 481 GSIQQICSIYSNSLANNAQTRFELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTEK-G 539

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V   +         IS++D G GI    +  +  +F Q   +I     G GLGL I+  
Sbjct: 540 KVTCRLTLKDTHTLMISVQDTGIGIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRISSK 599

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           I+   GG+    S+  +G      LP   +    PE+NH S
Sbjct: 600 IIEQMGGEIWAESETGQGSTFTFTLPLV-LAEAQPENNHAS 639


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1331

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 11/278 (3%)

Query: 200  FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255
                   L  S+ ++ +   E+   + E     E          + AE  N AKS FLA+
Sbjct: 1496 LASANAKLQASHQQLEAKVKERTQQLEEKNLQLEQEVRERQRAEEIAEAANRAKSEFLAN 1555

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            MSHELRTPLN ILG++++ +        NE  K  I  IH+ G+HLL LIN+ILD+S+IE
Sbjct: 1556 MSHELRTPLNGILGYAQICKK---DKNLNEQQKNRIEIIHQCGEHLLTLINDILDISKIE 1612

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
            A + EL  +     D +R  + + Q++A++K I +  +   SL   V  DEK +RQ+++N
Sbjct: 1613 ARKMELCPTDFYFGDFLRGILEICQIKAEQKGISLIFQPLSSLPKIVQVDEKRLRQILIN 1672

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            LL+NAVKFT   G +   V +         ++D G GIA  ++  +   F Q        
Sbjct: 1673 LLNNAVKFTEK-GSITFKVSYQK-GKVNFQVEDTGIGIAPNQLEEIFLPFQQV-GEYSRK 1729

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +G GLGL I++ +    GG   ++S L +G      L
Sbjct: 1730 TEGTGLGLSISRQLAQMMGGTITVKSSLGKGSIFSLDL 1767


>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 867

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 8/254 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D+   +E+ K LSDE +K A     AKS FLA+MSHE+RTP+NAI+GFSE++       
Sbjct: 349 RDISERIEIEKKLSDEVKKSA-RATKAKSEFLANMSHEIRTPMNAIMGFSEILLESEKRN 407

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 +  +  +H+S  +L+ LIN+ILD S++EAG+  L E    L ++V     +   
Sbjct: 408 ----EQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAY 463

Query: 342 RAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399
           +A +K++++   +   + + V  D   + Q++LNL+ NAVKFT  G   + +T   T   
Sbjct: 464 QANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQG 523

Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             Y   + D G GI E  +P ++  F Q   +I    +G GLGL I++ ++  +GG   +
Sbjct: 524 NVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSV 583

Query: 459 RSKLREGVEVIAIL 472
            S L  G      L
Sbjct: 584 TSTLGSGSCFSFSL 597


>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 932

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   V V +   +G    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
          Length = 1331

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 1452

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E + +++     + +AE  N AKS FLA+MSHE+RTPLN ILG  ++++        N
Sbjct: 1054 INERKRSQADLLSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTT----EPN 1109

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  KEY+    RS + L  L+++ILD+SRIEAGR ++ E+   +  +      +    AQ
Sbjct: 1110 DEQKEYLAGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDTDAQ 1169

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398
             K + +    D  L + +  DE  +RQ++ NL+ NA+KFT   G V V         TS 
Sbjct: 1170 GKGLVLDFIWDDELPTALIGDEARLRQILFNLVGNAIKFTDK-GEVLVEASLLPSPNTSS 1228

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++ D G GI E  +  +   F Q  I+     QG GLGL I + + +  GG   I
Sbjct: 1229 VRVLLTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDISI 1288

Query: 459  RSKLREGVEVIAILPNT 475
             S L EG  V   LP  
Sbjct: 1289 DSALGEGTTVYLSLPFK 1305


>gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
 gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
          Length = 928

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 157/366 (42%), Gaps = 29/366 (7%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              +     ++++L ++A+  F L          +V+A          V      G+  T
Sbjct: 172 RALLISGIVIILSLVLAAIMAFKLSRMFMTPLNKLVLA------TDKLVEGKRSTGLTDT 225

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEE 244
            L  F  +   L      ++  + E    I            + E         +K A++
Sbjct: 226 MLGEFDILREGLNTIADTMVMQKDEMQKNIDQATSDYRETLEQYETQNIQLTMAKKEAQD 285

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS FLA MSHELRTPLN ++GF+  +    +        K+Y+  I  S   L+ +
Sbjct: 286 ANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKH----QKDYLDTIMLSANSLMTI 341

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           I++ILD S++EAG  EL      L D V E + +L   A EK +E+   I+P +   +  
Sbjct: 342 ISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYINPQVPDDLTG 401

Query: 364 DEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTV 420
           D    +QV++NLLSNA+KFT  G  +V ++            +S+ D G GI   +  ++
Sbjct: 402 DPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTGVGIPMDKQDSL 461

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----AILPNTR 476
            T FGQ   +I     G GLGL I + I+    G+  + S    G          LPN  
Sbjct: 462 FTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTFNSVFRLPNHV 521

Query: 477 VLNFIP 482
             N +P
Sbjct: 522 FTNDLP 527


>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1382

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
             F   +T    +     L   ++    I E + A+  +   R  AEE N  KS FLA+M
Sbjct: 500 QVFPISVTLSPIRDETGTLMGASKIARDITERKQAEEETRLARIAAEEANRTKSDFLANM 559

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NAI+G + + +            K Y+  I  + + LL +IN+ILD S+IEA
Sbjct: 560 SHEIRTPMNAIIGMTHLAQRT----NPTPKQKGYLTKIGNAAEALLGIINDILDFSKIEA 615

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G+ +L     SL D++   + M+ ++A +K +E+   + P +   +  D   + Q+++NL
Sbjct: 616 GKLDLESIPFSLDDVLGNLVDMVGIKAGQKGVEVVLAVAPDVPRTLIGDPLRLGQILINL 675

Query: 376 LSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +NAVKFT   G + + V             +S++D G G+   ++  +  SF Q   +I
Sbjct: 676 ANNAVKFTDK-GEIIIRVVNAPDIPTAGRLMVSVRDTGIGMTSEQVSNLFHSFNQADTSI 734

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                G GLGL I++ +    GG   + S+  +G   I  
Sbjct: 735 TRKYGGTGLGLAISKQLCEMMGGTVCVESEPGKGSTFIFT 774


>gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
          Length = 932

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   V V +   +G    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 6/270 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              N +      E +D IA  +  ++   E ++ AE  N AKS FLA+MSHE+RTPLN I
Sbjct: 339 IDGNDEFTRFAHELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLNGI 398

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E++    +    N + KE + DI  S   LL LIN+ILDLS+IE+G   LS    +
Sbjct: 399 IGMTEILSDSQL----NGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTAN 454

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386
           L +I+ + + M+  +A ++ + +  +    +      DE  ++Q+++NLLSNA+KF+   
Sbjct: 455 LREIIFDTMNMVNAQALKQEVTLEVEFADDVPVYAEMDEFRVKQILMNLLSNAIKFS-AN 513

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V V     +     I + D G GIA  ++  +   F Q    I     G GLGL I +
Sbjct: 514 GSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICR 573

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            ++    G+ ++ S + EG     ILP  +
Sbjct: 574 QLVELMRGELVVESNVGEGSRFTVILPLVK 603


>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
          Length = 932

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   V V +   +G    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 921

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 153/362 (42%), Gaps = 12/362 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G    +L L          +  + S T+L A     L+   L         P+    +  
Sbjct: 140 GNVVGVLDLDLDLRPLYLQVLAHGSITVLAAAIALLLATHTLRRLNRAVLQPLSTLSALM 199

Query: 178 AIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             ++      + A    +    S  +     L +   +     + +D L  E+       
Sbjct: 200 ERVAHTEDYSARAEPSRIIELDSLASGFNRMLGQIAERDARLASHRDHLEDEVATRTEEL 259

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              ++ AE  + AKS FLA+MSHE+RTP+N +LG +E++    +    N   + +   + 
Sbjct: 260 LRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGL----NHEQRHFAEAVE 315

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+HLL +IN+ILD S+IE+G  EL      L D++ + + M    A++K +E+   + 
Sbjct: 316 NSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLP 375

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
           P +   V  D   +RQ++ NL +NA+KFT   G V V               IS++D G 
Sbjct: 376 PEVRRCVRGDPFRLRQIVGNLANNAIKFTER-GEVVVRARLLGEGTDGYRLRISVEDTGI 434

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI       +   F Q   +      G GLGL I + ++   GG+  + S+   G     
Sbjct: 435 GIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGACFHI 494

Query: 471 IL 472
            L
Sbjct: 495 DL 496


>gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1102

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 161/420 (38%), Gaps = 17/420 (4%)

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +W +      +  +     +++  I           L            +  +      
Sbjct: 347 TLWMVGLTGSLSLLIFGWIWLIDRRIM-RPAQRQSRRLQESDALGRFVIEVAGVGLMIVE 405

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                 +  +A     +  +A +          +               +   D+ +A  
Sbjct: 406 RNTRQVLLANAAAQSLIDQAAPAGLAQLQDACEARLASCDTSPEGPPQVLPRFDVDMAC- 464

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              A     Y+   L +    + +      + + E    ++   E  + A+  N AKS F
Sbjct: 465 ---ANGETRYLEVRLVQITYDVRAALLCALNDVTEARRGEARLREAIRAADAANRAKSSF 521

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLN +LG  E++ L  + P      ++ +  +  + Q L+++IN++LD S
Sbjct: 522 LATMSHEIRTPLNGMLGSIELLSLSRLDP----RQRDQLAVMQHASQSLIDIINDVLDFS 577

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           +IEAG+  L      L ++V E        A  K + +    DPSLS  V AD   + Q+
Sbjct: 578 KIEAGQMSLQPRPCRLDEVVEEVTRNFAAEAARKRLRLLCINDPSLSEPVMADAVKLEQI 637

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + NL+SNAVKFT   G+V VT             G  + + D G GIA  +   +   F 
Sbjct: 638 LNNLISNAVKFTEQ-GKVIVTARRKRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFV 696

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +      G GLGL I + ++    G+  + S+   G   I  LP        P + 
Sbjct: 697 QAEQSDTRHYGGTGLGLSICRRLVELMRGEIRVVSEPGLGSCFIVSLPLASAGIAAPAEA 756


>gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 389

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 168/336 (50%), Gaps = 6/336 (1%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           A  ++ + +   S   L   +      ++  + T  + +   ++    G           
Sbjct: 52  AVAMVDIRLGGTSGVDLLSRLKAEAPGLIGIMITAHVDTPSAIEAMRRGAYDYIDKSCA- 110

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
                    V IL    E   L  E           ++ AE  N AKS FLA++SHELRT
Sbjct: 111 -----PGELVAILERAFETHHLRMEKSRMIEALRLAKEGAEAANQAKSNFLATISHELRT 165

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+GFS +I +E MGPL+NE Y+EY+ DI+ SG+HLL++IN+ILDL++ EAG+ EL 
Sbjct: 166 PLNAIIGFSNLILMELMGPLSNERYREYLRDINASGEHLLSIINDILDLTKAEAGQTELF 225

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           ES I   D +     +L  +A+E  + +   I   L  + ADE+  +Q+ LNLLSNAVKF
Sbjct: 226 ESVIHPRDAIIPVERLLMPKAREAGLTLTSNITEHLPLLRADERKAKQIFLNLLSNAVKF 285

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GG + +    T      I++ D G GIA   I  V   F Q   ++     G GLGL
Sbjct: 286 TPPGGSIEIDAHLTHKGDLAIAVADTGIGIAPEHIDRVCEPFVQIDSSLSRRHDGTGLGL 345

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           P+ +S M  H G   +RSK   G   I   P  R++
Sbjct: 346 PLVKSFMELHEGSLHLRSKSGIGTCAIVTFPAKRLV 381


>gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 885

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 103/335 (30%), Positives = 167/335 (49%), Gaps = 8/335 (2%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           N +L +   L    V++A+    +    +  +S      + +      +  + +     L
Sbjct: 289 NLILLFCTALFASLVIIAIIGANLYRRIINYLSHVINTMSQIEETHDYSQKINEEGSDEL 348

Query: 216 SCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           S  ++  + LI E         + ++ AE+ N AKS FLA+MSHE+RTPLN I+G S+++
Sbjct: 349 SLFSKMLNKLINERHQNVLKILQAKQEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIM 408

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                G     T  EY+  I  S Q LL LIN+ILDLS+IE+G   ++ +   + ++V +
Sbjct: 409 A----GTKLTATQNEYLQTIETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYD 464

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
            + ++  +  EKN+ +  +ID     + + DE  MRQV++NLLSNAVKFT  GG +V ++
Sbjct: 465 TLTIVLAKIAEKNLTLEVEIDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVIS 524

Query: 393 VGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              T+      ISI D+G GIA+ +   + + F Q          G GLGL I + ++  
Sbjct: 525 CSNTADYCDLLISIHDSGIGIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITL 584

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GG+  + S+  EG      L +  V    P  N 
Sbjct: 585 MGGEISLISEKGEGCCFSIKLRSQIVTQEKPVSNQ 619


>gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 810

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 13/295 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                  + I S   E+     EL+      +  R  AE  N AK+ FLA+MSHE+RTP+
Sbjct: 364 RGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLANMSHEIRTPM 423

Query: 265 NAILGFSEVIELETMGP-LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            AILG++E++   +      +    E I  I R+G HLL +IN+ILDLS+IEAG   + +
Sbjct: 424 TAILGYTELLAENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLSKIEAGMMTVEK 483

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
               L  +V++   ++Q +A  K I +   +   L ++   D   ++Q+++NLL NA+KF
Sbjct: 484 IPTDLAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQILVNLLGNAIKF 543

Query: 383 TAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T   G V + V   +        I + D G G+   ++  +  +F Q   +      G G
Sbjct: 544 T-EHGEVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADTSTTRKFGGTG 602

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-------PNTRVLNFIPEDNHE 487
           LGL I++S+    GG   I S+  +G      +       P+  V    PE + +
Sbjct: 603 LGLRISKSLAQLLGGNITISSEPGKGSVFQLTISTGLAEAPHEVVTEVKPESSTK 657


>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
 gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
          Length = 919

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISGLMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLTIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  +F 
Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+  +G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTFWFHI 516


>gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ]
 gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ]
          Length = 470

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 170/300 (56%), Gaps = 14/300 (4%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           +     ++  A +    +T  +++ NVK+L+ Q +          A     E ++ AE+E
Sbjct: 182 NFVFVILVGIAAAICIVLTLVIYRKNVKLLNSQYD----------ANLELQEKKENAEKE 231

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +++KS+FLA++SHELRTPLN+I+GFSE+++ E++GPL N  YKEYI +I+ +G HLL+LI
Sbjct: 232 SVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEYIKEINHAGVHLLSLI 291

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD S+ EA +  +      L  IV  C  M+  +AQE  +E+ + +  S   +  D 
Sbjct: 292 NDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVELKRDMPESQIVLMVDA 351

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + M+QVILN+L+N++KFT   G V ++V         I I DNG GIA+ ++  V++ FG
Sbjct: 352 RRMKQVILNILTNSMKFTPEKGFVRLSVEKKQE-EVVIEICDNGIGIAQQDLYKVMSVFG 410

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q         +G GLGLP+++ ++    G F I+ +   G  V    P    +   PE  
Sbjct: 411 QADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTLSFPC---VEESPESE 467


>gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1239

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/507 (20%), Positives = 191/507 (37%), Gaps = 32/507 (6%)

Query: 6   KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLF----RVSPILPLFVLLVAN 61
           ++  +D    I      L         F   + TL  ++L       + +      ++  
Sbjct: 283 EHVSRD-ENDIQAATGLLHNAAALSKRFAERVATLEAQTLSFRLSPSAEVAGSVGEILDE 341

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKK--VMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           +       P           +  ++   G +      +     +   R  +     + GL
Sbjct: 342 LSRLARVLPSSVGLQAKATPLTVSDQIAGYRAAFARFNQASNALSGARDQVRNEARSAGL 401

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
                                 +  +   ++I          + F++   V +A   + +
Sbjct: 402 LVARFAGQARSDALIHNDRGMLATIVAGTVAILLAGAIAWSTSRFIAQPIVALASVMRRL 461

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL----------- 228
            +  +     +      +   T       ++ ++I   +AE +    ++           
Sbjct: 462 AAGDLNAKIASAERGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAER 521

Query: 229 -----------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                      E       + R +AE  N AKS F+A++SHELRTPL  IL   E +   
Sbjct: 522 TDALHHQTEVLEAQAIELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAA 581

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           T  P +       +    R+   L+N +N+ILD S+ EAG++EL    + L   V     
Sbjct: 582 TTPPADWHVQ---VDRAQRNALRLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAE 638

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
              + A+ K   +   IDP+L +V+ D +   +++LNL+SNA+KFT  GG VH+TV    
Sbjct: 639 DAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLTVTALD 698

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G     +++D+G GIA  ++P +   F Q   +      G G+GL + + ++   GG+  
Sbjct: 699 GERFEFAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVG 758

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPED 484
           + S+  +G      LP     N +P +
Sbjct: 759 VNSEPGQGSCFFVRLPLGAEQNTVPTE 785



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF- 382
              + + +++ + + M       + + + + I   L  +  D   M  +++NL++NA +  
Sbjct: 1084 ETVPVAELIDDALRMSAGLLARQEVTVVKDIA-DLPLLPLDRHRMLLILVNLINNAKQAL 1142

Query: 383  ---TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                     V  +     G    I++ DNG GIA   +  +       S    + + G G
Sbjct: 1143 DGVIDRSRCVTFSASLADGAVLRITVADNGNGIAPEHLARIF------SHGFTTRKDGHG 1196

Query: 440  LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479
             GL          GG   +RS    +G   I  +P    L+
Sbjct: 1197 FGLHSCALAAQEMGGSLTVRSDGAGQGATFILDIPLDAPLS 1237


>gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 458

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R++ E     ++ F+A++SHELRTPL +I GF E +    +     E  + ++  +    
Sbjct: 224 RRKLE---QMRTEFVANVSHELRTPLTSISGFLETLLDGAL--EEPEIARRFLEHMSDET 278

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  LIN++L+LS IE  ++  +   + + +++     + + RA+EK + +   + P+L
Sbjct: 279 ERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNL 338

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  DE  + QV+ NL+ NA+K+T   G++ +    +    + I + D G GI    + 
Sbjct: 339 PPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVI-VTDTGIGIPTESLA 397

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +   A      G GLGL I + I+  HGG   + S + +G     ILP  
Sbjct: 398 RIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFILPVA 454


>gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 640

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 170/412 (41%), Gaps = 23/412 (5%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
             +  A+ A  L   ++++   +       W        +      ++L        T  
Sbjct: 75  LGLIAALIANVLFGAQRLVTELLTNQVTGWWINVFGAVAL------SMLYFYFRMDQTKR 128

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST--QAIMSMHVLDISLAGML 193
           +         L AL +     + +  + +      + A+               +L  + 
Sbjct: 129 FRLCAHIGIALCALGLVVPVLYGMTSSSWWLVILPLAAVLLMGVRHGVPWAGICALTMVA 188

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIA--------ELEVAKSLSDETRKRAEEE 245
                    I     ++ V+    +     ++           E       + R  AE+ 
Sbjct: 189 IHLFGESLLIANAAGETTVESSGSRVMLVLILFGIAARSRWVAERQTDELRQARDAAEQA 248

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+N +LG + ++    +    N+  ++Y   I  SG+ LL +I
Sbjct: 249 NQAKSDFLANMSHEIRTPMNGVLGMTGLLLESNL----NKEQRDYATSICHSGEALLAII 304

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWAD 364
           N+ILDLS+IEAGR E   +  SL  +V   + +L++RA++K +       +        D
Sbjct: 305 NDILDLSKIEAGRMEFESNPFSLDVLVDSVVSVLRIRAEDKGVFFSVGLPEGDGMDYVGD 364

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              +RQV+ NLL NAVKFT   G V + +   +       ++D+G GI++  +  + ++F
Sbjct: 365 SLRIRQVLFNLLGNAVKFTMQ-GEVRLEIKVITNG-LRFEVRDSGIGISQEGLARIFSNF 422

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q   +      G GLGL I++ ++    G   + S+L +G      LP  +
Sbjct: 423 VQVDSSTSRKFGGTGLGLVISRKLVEGMNGSMGVESELGQGSCFSFELPLKQ 474


>gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
 gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
          Length = 424

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 11/243 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F++++SHELRTPL +I G++E +  + +   + E  ++++  I      +  LIN++
Sbjct: 189 RKEFISNVSHELRTPLTSIHGYAEALLEDDL--EDKELIRKFLSIIESEAARMTRLINDL 246

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL ++E+G  +     I+  +++     +++  A++  +E+       L  V  D+  +
Sbjct: 247 LDLEKLESGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVYPDELYLV-GDKDRL 305

Query: 369 RQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
            Q+ LNL+ NA+K+T     G+  VTV  W       + +KD G GI E     +   F 
Sbjct: 306 TQMTLNLVDNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVGIPEKAQKKLFERFY 365

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +   A      G GLGL I ++I+  H G     SK   G + +  LP  R      EDN
Sbjct: 366 RVDKARSRKMGGTGLGLSIVKTIVEKHNGVIEFTSKEGVGTKFVVTLPINRE-----EDN 420

Query: 486 HES 488
           +E+
Sbjct: 421 NET 423


>gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s]
          Length = 607

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 16/266 (6%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + ++ +L  +    K +++E +      N AKS FLA+MSHE+RTP+NA+LGF+++++
Sbjct: 286 QEKEQRQELTYKNIRLKKMTEEAK----AANRAKSEFLANMSHEIRTPMNAVLGFADLLQ 341

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   +     YI  I  SG+ LL LIN+ILDLS+IEAG+ +L    +++  I+ E 
Sbjct: 342 STI----TDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEI 397

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
             + + +A+EKNIE+   I P +   +  DE  +RQ++ N++ N++KFT  G  ++  + 
Sbjct: 398 EHIFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASC 457

Query: 394 GWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   Y      I+I D G GI+  +   +  SF Q          G GLGL I + 
Sbjct: 458 SQLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITER 517

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           ++   GG   + S++ +G       P
Sbjct: 518 LVHLLGGSIHLESQINQGSTFTFDFP 543


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 183/441 (41%), Gaps = 29/441 (6%)

Query: 55  FVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY-VWRIWLL 111
             LL A      +          S+    +   +     +     +   + +      L 
Sbjct: 220 VGLLAACFDGMLFKLLPEHVAFQSVSIYILMYLHCLTAIQFSRHFLHARQYFPRLDTGLR 279

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           +  +A       + L+    W           +L + L+   +    + Y  + +    +
Sbjct: 280 LLMLACAGILVSVPLIGLTVWNILASVTVSLVSLALLLTGLYVWRRGVRYGSYYTLAWAI 339

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +  +     +  +         ATA+                 +        L   + + 
Sbjct: 340 MLFAFIQATTGSLGLEVFGVFGATAVKIGV------------TIELITLSIGLADRINLL 387

Query: 232 KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           K    ++R+ AE+    + AKSRFLA MSHE+RTPLN +LG  +++    +    + + +
Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQR 443

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  SG  L+ +IN+ILD +RIE+G+  L +    L D++ E + +   +A +K +
Sbjct: 444 FYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRL 503

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
            ++  ++  +   +  D   ++QV++NLLSNA+KFTA  G V V+V   S          
Sbjct: 504 RLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHGQPHLVF 562

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D+G GI+E  +  +  SF QG  +      G GLGL I++ ++   GG+  ++S   
Sbjct: 563 AVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPG 622

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           +G      +P        P+D
Sbjct: 623 QGTRFAFDIPLLEA-PEAPDD 642


>gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 910

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 166/371 (44%), Gaps = 6/371 (1%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-PVVVALSTQA 178
             T +   E    +     I+  + ++  L I   +N++L   +F         A    +
Sbjct: 266 LITEIPESEATELSTRSGIIFTISLIISGLVILLATNYLLDRFIFRILAELRRGAERVGS 325

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                 L +     +A   S F  +   L   N +I          + E    +      
Sbjct: 326 GDLSQPLPVPQEREVAQVASAFNTMMSQLRARNAEIARQTESLKAEVQERRRIEQELIRA 385

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R  AE  + AKS FLA+MSHELRTPL AI+G+S+++  + +     ET    +  I  +G
Sbjct: 386 RDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLL-EQLVDKGIYETVAHDVRRIRAAG 444

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            HLL LIN+ILD+S+IEAGR  +S     + D+VR+ +  +  + ++ +  +     P +
Sbjct: 445 NHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQMEKNHNRLQLHCPPDI 504

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEG 415
             + +D   +RQ ++NLLSNA KFT   G V +TV      G+     ++ D G GI   
Sbjct: 505 GMLNSDATKVRQALINLLSNAAKFT-ENGTVTLTVTRYEDEGRLWFRFTVADTGIGIPPD 563

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +  +F Q   +      G GLGL ++Q +    GG+  ++S +  G      +P +
Sbjct: 564 KLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQSTVGVGSVFTIEVPAS 623

Query: 476 RVLNFIPEDNH 486
             L      +H
Sbjct: 624 LSLPTPVPADH 634


>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1236

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL KS FLA+MSH
Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +  ++        K+Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL      L  ++   + +  L+AQE+ +E+      +   +   D   + QV++NLLS
Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +   +  +F Q   +   
Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GG+  ++S+L  G      +
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945


>gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 837

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 141/254 (55%), Gaps = 3/254 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +   + A+      +  AE  + AKS  LA+++HELRTPL +I+GFS+V+     G L
Sbjct: 587 RDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDVLLKGKAGDL 646

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE+ K Y+  +H +G+HLL+LI +ILDLS+IE+G+  L+   IS+I++V +    +Q  
Sbjct: 647 -NESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERISIIELVNDLKEYIQPF 705

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K + +  ++D  L+ ++AD   ++Q++ NLL NAVKFT   G + + V         
Sbjct: 706 VSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEE-GSITLEVSQNEDD-VQ 763

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI +G    +  SF Q         QG GLGL +   ++  HGGQ  + S++
Sbjct: 764 FSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHGGQIWVESEI 823

Query: 463 REGVEVIAILPNTR 476
           ++G      +P+ R
Sbjct: 824 KKGSRFTFTIPDNR 837


>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1102

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +  AEE +  KS FLA+MSHELRTPLN ++G +E+++    G   N
Sbjct: 428 IQRRKETEQKLKAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQ----GTHLN 483

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +E++     SG+ LLNLIN+ILD S+IEAG+ +L      L +++ + +  L  R  
Sbjct: 484 QHQQEFVDACRSSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTN 543

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EKN+E+   +DP    ++  D   +RQ+++NL+ NA+KFT   G V V     S      
Sbjct: 544 EKNLELPCFVDPESRLTLKGDSYRLRQILVNLIGNAIKFTDS-GEVVVRTRTVSRENGNI 602

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + S+ D G GI+E +I  +  SF Q   +      G GLGL I+Q+++   GG+  I 
Sbjct: 603 RIHFSVTDTGIGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIE 662

Query: 460 SKLREGVEVIAILPNT 475
           S+   G      +P  
Sbjct: 663 SQDGVGSTFWFEIPFE 678


>gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 968

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 7/285 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L           +    IL   + +  +  E E  +      ++RAE  + AKS FL
Sbjct: 541 LGILVVMDVQPLTDIELARSILGIFSGRAAMELEREETELALRVAKERAEAASQAKSEFL 600

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A MSHE+RTP+NAILG +E+++ +     + +   E++    ++GQ LL LIN+IL+LSR
Sbjct: 601 AMMSHEIRTPMNAILGITELLQEQP----SKKEQLEFLTVQAKAGQALLTLINDILELSR 656

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVI 372
           +EAGR +L  +   L +++R    +L+  A+ K + +  +I   L  +   DE+ +RQV+
Sbjct: 657 LEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHLEIAEGLSPNWIGDERRLRQVL 716

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NL+ N +KFT   G + ++    +     I +KD+G GI       +   F Q      
Sbjct: 717 INLVGNGIKFTNR-GSIWISAQPMANG-LEIRVKDSGAGINPRHHDKIFERFHQVDSTAT 774

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               G GLGL I + +M   GG+  + S+  +G      LP +  
Sbjct: 775 RKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLALPLSEA 819


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1331

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 914

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 12/276 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E    K    + ++ AE    AKS FLA+MSHE+RTPLN I+G+S+++    +   
Sbjct: 500 RDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTPLNGIIGYSDLLAETLVDTS 559

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE    Y   + +S   LL+++N+ILD S+ EAG+ +L+E    L +++ E I ++ ++
Sbjct: 560 FNE----YAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEVPNDLKNLILEAIKIMDIQ 615

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A    ++I   ID S+ +V   D   +RQV+LNL+ NA+KFT   G +   +        
Sbjct: 616 AIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFTET-GFIECRLTRLESAIK 674

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 IS+KD G GIA+     +  SF Q   +      G GLGL I + ++     + 
Sbjct: 675 QEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTGLGLAICRQLLQLMKSEL 734

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            ++S++ +G E    +P  R+    P    EST+ K
Sbjct: 735 KLKSEVGQGSEFFFEIPF-RIPEIDPNLLLESTESK 769


>gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1122

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            Y      V+ L    E   L  E   ++   ++ R  AE  + +KS F+A+MSHE+RTP
Sbjct: 679 PYRWRDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTP 738

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           + AILG+++++       + +    E++  I R+G +LL +IN+ILDLS+IEAG+ E++ 
Sbjct: 739 MTAILGYADLVRD----MIEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNH 794

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
                  ++ +   ++++RA+E  + +  +    L   + +D K ++Q+++NL+ NA+KF
Sbjct: 795 EKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKF 854

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V + V +   +  +I I D G G+++ +   +   F QG  ++     G GLGL
Sbjct: 855 TQK-GWVQIRVRF--NKWLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGL 911

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I++ +    GG  +  S    G      
Sbjct: 912 AISKRLTEMLGGTIIASSTEGVGSTFTVS 940


>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
 gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
          Length = 1059

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 157/345 (45%), Gaps = 16/345 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L  ++      +V+ L+      +      +   L +           L +   ++   
Sbjct: 297 TLFISIVALLATIVMGLTLTLARQVTNNLKLVLDFLKSESDETRPSLEKLIQGKDELSVF 356

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGF 270
             + + L  E E AK       + AE       + + AKS FLA+MSHE+RTPLN ++G 
Sbjct: 357 AQKVERLTIEREHAKEKLTLAVEDAEKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGI 416

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           SE++    + P    T ++Y+  I  S Q LL+LIN+ILD S+IE+G   +S  + S+ +
Sbjct: 417 SEILADTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRE 472

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-R 388
            + +   ++  +A+E+ I +   I P     V  D+  +RQ+++N +SNAVKFTA GG  
Sbjct: 473 SIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVT 532

Query: 389 VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + +     S     I   ++D G GI + +   +   F Q   +      G GLGL I+ 
Sbjct: 533 LSIKTLEQSDDNVTIRFAVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAIST 592

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            ++   GGQ  + S   EG      L    V   +P+ +  +   
Sbjct: 593 QLVELMGGQIQLDSVKGEGSCFYFDLEL-PVDMMLPKPSTATADI 636


>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1236

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL KS FLA+MSH
Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +  ++        K+Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL      L  ++   + +  L+AQE+ +E+      +   +   D   + QV++NLLS
Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +   +  +F Q   +   
Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GG+  ++S+L  G      +
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945


>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
 gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
          Length = 641

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 15/331 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML---ATALSFFTYITYHLFKSNVK 213
           F++      +F  ++  L     + +  L +    +       +     +    F   V 
Sbjct: 151 FLMVAEAIKTFLLILAVLWVTFRLIVKPLQLLSGAVSDFSGGYVPSKVQLPKRWFFDEVS 210

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L  +      +  +   +   +E R +AE  N  KS FLA+MSHE+RTP+N I+G + +
Sbjct: 211 LLEYKYNLS--VERVRERQVEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASL 268

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    ++  K+ +  I+ S   L+ +I++ILD S+IEAG+ EL  +  +L D++ 
Sbjct: 269 LNDTKL----DKQQKDLVNVINSSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLS 324

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E   +  ++AQ+K++++   IDP L   V  D   ++QV+ NLL+NAVKFT   G V + 
Sbjct: 325 EVGRLHTVKAQQKSLQLVCDIDPQLPLEVEGDVGRLKQVLNNLLTNAVKFTER-GYVKLL 383

Query: 393 VGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V   S RG+       + D+G GIA+     V   F Q   +      G GLGL I   +
Sbjct: 384 VSQVSRRGRVANVLFRVVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRL 443

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   GG+ L+ S+L  G      +P   V +
Sbjct: 444 IEVMGGKILLTSELGLGSCFEFTIPLNIVSD 474


>gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 639

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
               +    + +AL    +++  ++                     +   +       A+
Sbjct: 317 QTFAVGLIGLFIALLVSYLINRGIIKPLEQLKQGAERLSNGRYDQKVIVDSDDEFGELAK 376

Query: 221 K-----DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                   +    E  K  ++E +      +E +  KS  +A +SHELRTPL +I G+ E
Sbjct: 377 AFNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVE 436

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++   TMG + N++ ++ +     +   L  LI  +LDLS+IE G  E+    +++ +IV
Sbjct: 437 LVLDGTMGAI-NDSQRKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIV 495

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + I  L+  A EKNI++ + ++    ++ AD+  + QV+ NL+ NA+KF+     + V 
Sbjct: 496 GDVIQYLKPLATEKNIKLNKNVEK--ITLEADKDRITQVLTNLIENAIKFSPANESILVN 553

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            G     G ++ + D+G GI + ++  V   F Q   + K  + G GLGL + +SI+  H
Sbjct: 554 -GTLEDEGLHLKVTDHGAGIPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAH 612

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
           GG   + S+L +G     ILP +
Sbjct: 613 GGSIWVESELGKGSTFHIILPIS 635


>gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 685

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 165/370 (44%), Gaps = 16/370 (4%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W  W+               L E          +       +A ++      +L + + L
Sbjct: 32  WNRWMERASGLKRAEVLGRPLREVFPELVGGRLLRA-----VATALETGLPALLSHKLNL 86

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              P+  + + +         I +  +       F  I        V+      E+  ++
Sbjct: 87  WPLPLYPSYAVRPHGPRLCQQIMINALRPHGEKRFVLIQIQDISHTVQREQLLQEQTRVL 146

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + E        +R +A++ N AKS FLA+MSHE+RTP+NAI+G ++++    +    N+
Sbjct: 147 MQRE---EELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETEL----NK 199

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + Y+    R+G  LL LIN++LDLS++EA R EL      L  +V   + +  LR QE
Sbjct: 200 DQRRYVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRTQE 259

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQ 401
           K +++  ++       V +D+K +RQ+++NLL NAVKFT  G     V V     +G   
Sbjct: 260 KGVKLDFELSARAPRYVISDQKRLRQILVNLLGNAVKFTQSGQIQLWVDVRDCEDAGGWL 319

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  ++D+G G+++ +  ++   F Q   ++     G GLGL I + ++    G   + S+
Sbjct: 320 YFRVQDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAICKKLVELLSGDIWLESE 379

Query: 462 LREGVEVIAI 471
           L +G      
Sbjct: 380 LGQGSRFHFT 389


>gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 885

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 143/262 (54%), Gaps = 7/262 (2%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                     I + +  +    + ++ AE  + AKS FLA MSHELRTPLNAILGF++++
Sbjct: 376 REYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLM 435

Query: 275 ELETMGPLNNE--TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           E E     N     +KE++  I RSG+HLL LIN++L++S+IEAGR  L+ +  +LI ++
Sbjct: 436 ERELYHNPNIPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLL 495

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-H 390
                ML+L A  K + +   ID  + + ++ADE+ +RQ ++NLL NA+KFT  GG +  
Sbjct: 496 NSLREMLELPASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIKFTVKGGVILR 555

Query: 391 VTVGW--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +G         +  ++D GPGI   E+  +   F Q      S  QG GLGL I Q  
Sbjct: 556 VKLGKFNHDFGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQ-QGTGLGLSITQKF 614

Query: 449 MANHGGQFLIRSKLREGVEVIA 470
           +   GG+  + S+  +G     
Sbjct: 615 IGLMGGEIQVSSERGKGTIFRF 636


>gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida
           LFI1238]
 gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida
           LFI1238]
          Length = 929

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 161/332 (48%), Gaps = 19/332 (5%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYI 203
           S +  F L   V     P+   +S    +    L++ +   L   L        +    +
Sbjct: 188 SGVFAFRLMQDV---TQPISHMVSVVDRIRRGHLNVRIENKLHGELDTLKNGINAMAISL 244

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MSHELRTP
Sbjct: 245 SDYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF+  +   ++    ++  K+Y+  I RS  +LL +IN+ILD S++EAG+  L  
Sbjct: 305 LNGVIGFTRQMLKTSL----SDNQKDYLQTIERSANNLLTIINDILDFSKLEAGKLLLEN 360

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
                 D + E + +L   A EK +EI  KIDP + S +  D   ++QV+ NL+ N++KF
Sbjct: 361 LPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDPRIPSGLIGDPLRIQQVLNNLVGNSIKF 420

Query: 383 TAIGG-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G   + + +   +         ++D G GI+E +   +  +F Q   +I     G G
Sbjct: 421 TEKGNIDISIELKHLNDDFIDVQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           LGL I Q +++  GG+  + S+L +G      
Sbjct: 481 LGLVITQKLVSQMGGEIGLSSRLHQGSTFWFT 512


>gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
 gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
          Length = 470

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  FLA++SHEL+TP+ +I GFSE +    M   N +  + ++  I +  + 
Sbjct: 236 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLHIILKESER 293

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI ++LDLS+IE   ++L+   + + +++ E  ++L+ ++QEK I +   +     S
Sbjct: 294 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQVDVL-RHVS 352

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++Q+ +NL++NA+ +T  GG V V +        YI + D G GI+  EIP +
Sbjct: 353 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVAL-LEDEHNAYIKVSDTGIGISTEEIPRI 411

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   + S + EG      LP  
Sbjct: 412 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPKA 466


>gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
 gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
          Length = 580

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHEL+TP+ +I GFSE +    +   + E   E++  I +    L  
Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTEFLSIILKESVRLET 409

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++LDLS+IE  +++L+    +  +I++E  ++L+ +A EK I++  ++      V A
Sbjct: 410 LIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYVMA 469

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++Q+ LNL++NA+ +T  GG V ++            + D G G+ + EIP +   
Sbjct: 470 DPLRLKQIFLNLVNNALTYTPEGGSVTISARPRK-GAYEFDVADTGIGMKKSEIPRIFER 528

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +          G GLGL I + ++  H G   +RSK  +G      L
Sbjct: 529 FYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSL 577


>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 735

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 43  IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 99

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 100 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 156

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 157 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 212

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 213 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 272

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 273 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 332

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 333 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 382


>gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 522

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 147/271 (54%), Gaps = 9/271 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L    ++ +L+A+ +       + ++ A+  N AKS FLA+MSHELRTPLNAILGF++
Sbjct: 92  SQLGVAVQQAELLAQTQEQARQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQ 151

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++             +++I  I+RSG+HLL LIN+IL++SRIEAG   L  +A  L D +
Sbjct: 152 LMSTN---QNLAPEKRQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFL 208

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      +LRA  KN+ +  +    L   + AD+K +RQV++NLL NA+KFT   G V V
Sbjct: 209 KSLEDFFKLRATSKNLHLIFERPQGLIRYIKADDKKLRQVLINLLVNAIKFTDE-GSVTV 267

Query: 392 TVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V   +          ++D G GIA  +   +  +F Q    +  A +G GLGL IAQ  
Sbjct: 268 RVSHQNQDTSDILKFEVEDTGLGIAPEDCEGLFEAFAQTETGLN-ASEGSGLGLAIAQQF 326

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   GG+  +RS L +G      +P  R  +
Sbjct: 327 VTLMGGEITVRSCLNQGSTFSFTIPVQRTED 357


>gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 576

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 41/397 (10%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G    ++ +  P   T   L    +  L  A+  + L       A+  ++  V   +   
Sbjct: 170 GDLIGMVKISFPLEKTQRSLAWNNAILLTTAIVTAFL-------AMLAAYAIVRYVIVKP 222

Query: 178 AIMSMHVLDISLAGML-----ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            +    V D    G L           F  +++   +    +++ Q E   +  +L+   
Sbjct: 223 VLHLKDVSDAIARGSLDMRADIRTGDEFEELSHAFNRMLRHLVTVQEELQHVNHDLDGKV 282

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               +   R  E N  K+ FLA+MSHELRTPLN+ILGFSEV+   +  P   +  + Y+ 
Sbjct: 283 DELAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLSTSTLP---DKQRRYVS 339

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +I  +G++LLNLIN++LDL++IE+GR EL  S  S+ D+V   +  L   A++K++E+  
Sbjct: 340 NIQTAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTS 399

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYIS-- 404
           ++ P +  +W D   ++Q++ NLLSNA+KFT  GG+V V V           + + I   
Sbjct: 400 EVSPEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAG 459

Query: 405 ------------IKDNGPGIAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQ 446
                       ++D G GI   E   V   F QG         +    +G GLGL I +
Sbjct: 460 DAPPVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVR 519

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            +    GG+  ++S+  +G     +LP         E
Sbjct: 520 ELSRLMGGEVRLQSEFGKGSVFTVVLPLKLKAQSESE 556


>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 815

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 162/386 (41%), Gaps = 22/386 (5%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VA 173
           +  G     + L        + L  +      + LS   L+ F+          P+  +A
Sbjct: 152 LLDGQQIGTVVLQSDSREFTDRLARFFFLVAGVMLSALLLAYFLASRLQRFISAPITHLA 211

Query: 174 LSTQAIMSMHVLDIS--------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              +A+ +     +         L  ++         I     K        +AE     
Sbjct: 212 QVIKAVSAEKTYSVRAQKQGNDELGTLIEGFNDMLVQIQQRDEKLEAHRQELEAEVQRRT 271

Query: 226 AELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AEL  A    ++       +++ AE  +LAKS+FLA+MSHE+RTP+N +LG   V+    
Sbjct: 272 AELSAANCELNQTVAELRVSKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESG 331

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +        + +   +  SG+ LL++IN+ILD S+IEAGR EL  +   L D++   + M
Sbjct: 332 LAG----EQRRFAEAVRNSGESLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEM 387

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
               AQ K + +  ++DP+L   V  D   +RQ+++NLL NAVKFT+ G           
Sbjct: 388 FAAGAQRKGVTVSLQLDPALPRYVEGDPVRLRQILVNLLGNAVKFTSRGSVQLKAAALAG 447

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GI       +  SF Q   +      G GLGL I++ +    GG+  
Sbjct: 448 EGWLRFEVADTGIGIRPEAQAHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELG 507

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPE 483
           ++S+   G      +    VL   PE
Sbjct: 508 LQSEYGVGSAFWFSV-RLEVLCGAPE 532


>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
 gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
          Length = 731

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 18/293 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           Y L K  + +     E   L  E+   K+      K  EE NLAKS FL+ M HE+RTPL
Sbjct: 39  YQLEKLIISLGDYFQELQYLQEEIAEQKASE----KALEELNLAKSEFLSMMGHEIRTPL 94

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA+ G + ++    +    ++  KE++  I  SG++LL +IN ILD S+IEA + EL E+
Sbjct: 95  NAVTGMTGLLLDTEL----SDQQKEFVNIIRNSGENLLTMINNILDFSKIEANKLELEEA 150

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L   + E + +   +A +K +E+   ++P+  S +  D   ++Q++ NL+ NAVKFT
Sbjct: 151 PFELGLCIEEVLRLFVSQASQKKLELAYLLEPNTPSGIVGDSTRLKQILANLIGNAVKFT 210

Query: 384 AIGGR-VHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
             G   ++V+     G             ++KD G GI +     +   F Q   +    
Sbjct: 211 PEGEVVIYVSSTVIEGGEGEVNPNYELRFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQ 270

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             G GLGL I++ +    GG+  + S+  +G      L      +  P  + E
Sbjct: 271 YGGTGLGLVISKRLSELMGGKMWVHSEEGKGSTFNFTLRAKAATSSSPVTSQE 323


>gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1447

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 3/257 (1%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +++++L  E ++ AE  N  K+ FLA+MSHELRTPLN+I+GFS+++  +  G LN 
Sbjct: 1190 ITEKKISENLLHE-KQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELNR 1248

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  +  IG+I  SG+HLLNLIN ILDLS+IEA + EL+     L   +     +L   A 
Sbjct: 1249 KQLR-AIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVAD 1307

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            +KNI+I   +D  L+ + ADE+   +++ NL+ NA+KF+     V +     +G    I+
Sbjct: 1308 KKNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGA-RKNGNLVEIT 1366

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GI   +   +   F Q +       QG GLGL + + I+  HGG    RS+  E
Sbjct: 1367 VTDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGE 1426

Query: 465  GVEVIAILPNTRVLNFI 481
            G      +P    +  +
Sbjct: 1427 GSTFAFAIPIASKMKVL 1443


>gi|119774168|ref|YP_926908.1| hybrid sensory histidine kinase BarA [Shewanella amazonensis SB2B]
 gi|119766668|gb|ABL99238.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 941

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 159/367 (43%), Gaps = 24/367 (6%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +     +    LD  L G L 
Sbjct: 193 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITDMVKLVGKIREGKLDARLEGNLI 249

Query: 195 TALSFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L             ++ +  +    I    ++  + + ++E+     D  +K A+E +
Sbjct: 250 GELDLLNRGINAMAASLSEYHDEMQQNIDQATSDLRETLEQIEIQNIALDRAKKDAQEAS 309

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  EYI  I RS   LL +IN
Sbjct: 310 RIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHS----SQMEYIKTIERSATSLLQIIN 365

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EA +  L      L   + + I +L   A  K +E    +D ++   +  D 
Sbjct: 366 DILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPENLSGDV 425

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
             + QV+ NLL NA+KFT  G   + +++         +   + D G GI   +   +  
Sbjct: 426 MRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDPEQQELLFQ 485

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSI-MANHGGQFLIRSKLREGVEVIAILPNT----RV 477
           +FGQ   +I     G GLGL I + + +   GG+    S++ +G      +P       V
Sbjct: 486 AFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVPLQLSPFPV 545

Query: 478 LNFIPED 484
            + +P +
Sbjct: 546 HDTLPLE 552


>gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 528

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 172/436 (39%), Gaps = 42/436 (9%)

Query: 80  LAVYAANLSLGKKVM--NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           +AV A     G+        +  GEV              G       ++          
Sbjct: 84  IAVAALYTKEGRTFALYRRQVSDGEVIPAAPRADGSAFEGGRLILFHPIILDYEKIGTLY 143

Query: 138 T------IYKSATLLIALSISALSNFMLPYAVFLSFF-------PVVVALSTQAIMSMHV 184
                   Y    + + +    L    L      S          V +A +   +     
Sbjct: 144 IQADTQEAYARLQVSVVIVFGVLLASSLVALYLASTLEGVISKPIVNLAETAAIVSEKQD 203

Query: 185 LDISLAGMLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
             + +AG     L          L +   + ++ Q  +D L   +E       E +++AE
Sbjct: 204 YSVRVAGSGRDELGRLIAGFNEMLAQIQRRDVAIQEARDRLEGAVEERTRQLLEAKQQAE 263

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS FL++MSHELRTPLN+I+GF+ +++   +  L  +  +  +  I  SG+HLL 
Sbjct: 264 EASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQ-LMRHISTSGEHLLA 322

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+S++EAG+  L   A  L + +   +   + +A +K  ++   +D  +  + A
Sbjct: 323 LINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLSMDHDMPIIKA 382

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------------------SGR 399
           D    +Q++ NLLSNAVKFT +GGR+ V                              G 
Sbjct: 383 DPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPLHPIPCTQYPGE 442

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D G GI   ++  +   F Q    +    QG GLGL + + ++  HGG     
Sbjct: 443 CVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTKQFQGTGLGLALTKQLVELHGGTIGAA 502

Query: 460 SK-LREGVEVIAILPN 474
           S+    G      LP 
Sbjct: 503 SEGPGRGSTFTVRLPL 518


>gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
 gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
          Length = 937

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/352 (27%), Positives = 161/352 (45%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  + G L 
Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 240 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF++ +    +      + ++Y+  I +S  +LL  IN
Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYVNTIEKSATNLLGSIN 355

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L     +L + + + I +L   A++K+IE+   IDPS+   +  D 
Sbjct: 356 DILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVDIDPSIPEDLSGDA 415

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
               Q+I NL+ NA+KFT  G   + + +   +     +   + D G GI E +   +  
Sbjct: 416 MRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTGIGIDEDQQELLFQ 475

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    SK   G      LP 
Sbjct: 476 AFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHSKPNTGSTFWFTLPL 527


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1236

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL KS FLA+MSH
Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +  ++        K+Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL      L  ++   + +  L+AQE+ +E+      +   +   D   + QV++NLLS
Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +   +  +F Q   +   
Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GG+  ++S+L  G      +
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945


>gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
 gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
          Length = 929

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  LLI L +SA+  + L Y V     P+    +    +    LD+ + G      
Sbjct: 174 IFSAFLVLLIGLGLSAVFAYRLMYDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 228 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +   T+      +  +Y+  I +S  +LLN+IN
Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIEKSANNLLNIIN 343

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L          + E + +    A EK +E+  KIDP + + +  D 
Sbjct: 344 DILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDP 403

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++QV+ NL+ N++KFT  G   + V +         +   ++D G GI+E +   +  
Sbjct: 404 LRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDLVELQFMVRDTGIGISERQQSQLFQ 463

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 464 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
 gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
          Length = 1030

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 150/285 (52%), Gaps = 12/285 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L+  L+  T IT    + ++       E   ++ E   A  ++ E+ ++AEE   AKS F
Sbjct: 342 LSNLLTSLTPITGKEVQIDITTPQGMDEALKIVDE---AIKVTQESVRKAEEATKAKSLF 398

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLN ILGF E++    +     E   +Y+  I +S ++LL ++N ILD+S
Sbjct: 399 LANMSHEIRTPLNGILGFLELLNTTDL----TEEQLDYVNTIAQSAKNLLQIVNNILDVS 454

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371
           +IE+ +  L       +D     I +    A +KNIE+  +I P++ S+   D   ++++
Sbjct: 455 KIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIPSIIKGDILKIKEI 514

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + NLLSNA+KFT   G +HV +            Y  ++D+G G++E +   +  +F Q 
Sbjct: 515 LTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYFEVRDSGIGMSEEQKEKIFEAFSQA 574

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++     G GLGL I +S +   GG+  + S+L +G +    L
Sbjct: 575 DESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGTKFYFNL 619


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1258

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 144/333 (43%), Gaps = 38/333 (11%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE 244
           + + G L   L F +         +++I   +     +  E+E  ++  +    R  A  
Sbjct: 484 VIVNGQLYGTLCFVSLTPRQTPFKDIEIELLRLMAQWIGGEIERQQAAQELAQARDVALA 543

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              AKS FLA+MSHE+RTP+N ++G + ++    +        +E++  I  SG  LL +
Sbjct: 544 ATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTS----QQQEFVTTIRHSGDTLLTI 599

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           IN+ILD S+IE+G+ EL E +  L   +  C+ +L  +A +KN+E+  +I P     +  
Sbjct: 600 INDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIG 659

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------------------ 399
           D   +RQ+++NLLSNAVKFT   G V V+V                              
Sbjct: 660 DVTRLRQILVNLLSNAVKFT-QSGEVIVSVNAEKLDYEQWERPETKTSLTPRITPSVATP 718

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++KD G GI    +  +   F Q   +      G GLGL I + +    GG   
Sbjct: 719 HYRIQFAVKDTGIGIPPERLNRLFQPFSQVDSSTTRKYGGTGLGLAICKQLCEMMGGTMW 778

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + S+   G      L    V+   P     + Q
Sbjct: 779 VESQEDIGSTFYFTL----VVPADPSTQQNTNQ 807


>gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 755

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 150/255 (58%), Gaps = 1/255 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+  + A+      +++AE  + AKS FLA MSHELRTPLNAI+GF+E +  + +GP+
Sbjct: 494 EDISWRKRAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPM 553

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E Y+EY GDI  SG+HLL +I +ILDL++IEAGR EL +  + +  +V   + +L+ R
Sbjct: 554 -PERYREYAGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDR 612

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
                + +   + P L  V ADE+ +RQV++NLL+NAVKFT  GGRV V+   T   G  
Sbjct: 613 GAAAGLNLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLE 672

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G G+ E E   V+  F Q    I    +G GLGLP+  +IM  HGG   I S+ 
Sbjct: 673 LHVSDTGIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQP 732

Query: 463 REGVEVIAILPNTRV 477
             G  V    P  R+
Sbjct: 733 DAGTRVTVTFPPRRI 747


>gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 917

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/395 (26%), Positives = 167/395 (42%), Gaps = 14/395 (3%)

Query: 91  KKVMNSDIKIGEVYVWRIWLL-----VGQIAIGLCWTLLTLVEPGTWTP---EYLTIYKS 142
           +    S    GE   +          V     G  W L   +     T    +    +  
Sbjct: 229 RPEFRSFPPDGEQRFYINLFGEETLGVALAIPGTPWRLFAEIPEAEATELSTQAGITFTF 288

Query: 143 ATLLIALSISALSNFMLPYAVFLSFF-PVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
           + ++  + +    N++L   VF +       A    +    H L +     LA     F 
Sbjct: 289 SLIIFGVVMVLAVNYLLNRFVFRTLEELQQGAERIGSGDLSHPLPVPPEQELAQVAQSFN 348

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + + L   N +I    A     I E    +    + R  AE  + AKS FLA+MSHELR
Sbjct: 349 TMMHQLRTRNTEIARQTANLKAEIQERRRVEQELIKARDAAEAASRAKSTFLATMSHELR 408

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL AI+G+S+++E      + +    + +G I  +G HLL LIN+ILD+S+IEAGR  +
Sbjct: 409 TPLTAIIGYSQLLEQLVSKGIYDTVAHD-VGRIRAAGTHLLALINDILDISKIEAGRMTV 467

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S     + D+VR  +  +  + ++    +     P +  + +D   +RQ ++NLLSNA K
Sbjct: 468 SVEYADVADLVRSAVNTIIPQIEKNRNRLHVHCPPDIGILNSDATKVRQALINLLSNAAK 527

Query: 382 FTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT   G V +TV       Q      + D G GI   +   +  +F Q   +      G 
Sbjct: 528 FT-EDGEVTLTVSRYQKDHQTWFRFVVADTGIGIPADKHDKLFKAFSQVDDSPTRKYGGT 586

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL ++Q +    GG+  + S +  G      +P
Sbjct: 587 GLGLALSQRLCELIGGRITMESAVGVGSTFTMEIP 621


>gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
 gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
          Length = 423

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 16/264 (6%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+  +I      + + +  RK           F++++SHELRTPL +I G++E 
Sbjct: 165 TLEQNNERYIIILHDVTQERILENARK----------EFISNVSHELRTPLTSIHGYAEA 214

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  + +   + E  + ++  I      +  LIN++LDL ++E+G  +     I+  +I+ 
Sbjct: 215 LLEDNLD--DKELIRRFLTIIESEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILE 272

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT--AIGGRVHV 391
               +++   ++ N+++     P    +  D+  + Q++LNL+ NAVK+T     G   V
Sbjct: 273 HVRNIIEPLTKDYNVDVEFV-SPDKIELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKV 331

Query: 392 TVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            V  +       + +KD G GI E     +   F +   A      G GLGL I ++I+ 
Sbjct: 332 LVEAYKDNNHVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVE 391

Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474
            H G     SK   G + I  LP 
Sbjct: 392 KHNGTIEFTSKEGVGTKFIVTLPV 415


>gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
 gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
          Length = 555

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R +AE  +  K+ FLA+MSHE+RTP+N I+G  E++E   +        + YI  I
Sbjct: 165 LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQTPLDT----QQQHYIKSI 220

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S +HLL ++N+ILDLS++E+G+       + L  + ++        A++ ++E+    
Sbjct: 221 KTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFLATAKDNSVELTFDY 280

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGI 412
             +L   V  D   +RQ+++NL++NA+KFT   G+V +       + Q   ++ D G GI
Sbjct: 281 PDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKFNVIDTGVGI 340

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +  +  ++ Q          G GLGL + +++    GG   + S+  +G      L
Sbjct: 341 KPESLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEKNKGSTFTLSL 400

Query: 473 P 473
           P
Sbjct: 401 P 401


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1331

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GG   + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGHITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
          Length = 752

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 18/348 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L  A +++     +     A++       S+  ++A            L       L 
Sbjct: 276 AFLVPAEYVAVNTQKLVNIVMAVIVGFATVFSIMAVIAGWFLLREKQQRELQAEKKTNLR 335

Query: 217 CQAEKDDLI---AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +     L     E+  A+  + E  + AE  + AK+ FL++MSH++RTP+NAI+G + +
Sbjct: 336 LEQYNVQLTQANDEMRRAQDAAAEALQSAERASKAKTDFLSNMSHDIRTPMNAIIGITAL 395

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ E       E   E++G +  SGQ LL +IN ILD+SRIE+G+  L    ++L   + 
Sbjct: 396 MKNEL---HEPEKLAEHLGKLESSGQLLLGIINNILDMSRIESGKTTLHVEKMNLPQQIS 452

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   +++ +A +++       +    +V AD   + QV++N+LSNAVK+T  GG + + V
Sbjct: 453 QLDSIIRQQAGQRSQSFTVSTNLQHENVLADPNRLNQVLMNILSNAVKYTPTGGHIRLEV 512

Query: 394 GWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                   Y      ++D+G G++     T+   F +   +  +  QG GLG+ I +S++
Sbjct: 513 EELPRNEHYARYRFVVQDDGIGMSADYQKTLFDPFTREERSGTNKVQGTGLGMAITKSVI 572

Query: 450 ANHGGQFLIRSKLREGVEVIAIL--PNT------RVLNFIPEDNHEST 489
              GG   + S   +G     +L  P        +    +PE+   ++
Sbjct: 573 DLMGGSISVESATGKGTRFEVVLEFPIDTEADTVQKAQALPEEEETTS 620


>gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 498

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 148/330 (44%), Gaps = 6/330 (1%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +  ++   +      A   +   V V      ++    L   L+  ++  L     +   
Sbjct: 160 VVGAVLVSAALQSIDANLRALQGVSVYSLLGGLLLATGLSWLLSRSISRPLLKMNKVARA 219

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTP 263
           + + +          D++    +   +LS E   +     + +  +  F+AS+SHELRTP
Sbjct: 220 MAQGDYTNRIDMTRHDEIGMLAQSLNTLSKELNDKINLLRQIDETRRDFVASVSHELRTP 279

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  I G++E +  E +     E  +EY+  I      L  L+N++LDL +IE G+ +L++
Sbjct: 280 LTIIQGYTEALLDEVV--ETPEKKEEYLHSILEETLRLRRLVNDLLDLRQIETGQVKLNK 337

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            A+ L D+    +  ++   +EK +++   +         D   + QV++NL+ NA++ T
Sbjct: 338 QAVDLADLFSAVLQKMEGLFREKQVDLKLALPEKPVVAEVDPDRIGQVLINLVDNALRAT 397

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGR+ V +   S     + + D+GPGI + E   +   F +   +   +  G GLGL 
Sbjct: 398 PGGGRILVKL-MVSDNEITVKVTDSGPGIPKEEQKLIWHKFYKIDKSRSRSGGGTGLGLA 456

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I + ++  HGG+  + S+  +G      LP
Sbjct: 457 IVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486


>gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
 gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
          Length = 921

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 19/304 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L   N ++     E +    ELE  K   +E  ++  + +  KS FLA+MSHELRTP
Sbjct: 474 SEELRMINEQLEERTKEAEKRAQELEKTKHQLEEKAEQLIQSSQYKSEFLANMSHELRTP 533

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++  E+      E  KE+   IH SG  LLNLIN+ILDLS++EAG+ E+  
Sbjct: 534 LNSILLLSEMLADESEEGNLTEEQKEFARVIHSSGSDLLNLINDILDLSKVEAGKMEIVI 593

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              +  ++           A++K +E+   +D ++   ++ D++  +Q++ NLLSNAVKF
Sbjct: 594 EETNTRELPVYVGNQFAYLAEQKGLELKIDVDDNVPDLIYTDQRRFQQIVKNLLSNAVKF 653

Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   G V   +   S                  ++++D G GI E +   +  +F QG  
Sbjct: 654 T-ENGSVTFRMRKVSAETAGKYVKTEGADFWLEVAVQDTGIGIPEKKQDLIFEAFQQGDG 712

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR----VLNFIPEDN 485
           A      G GLGL I +      GG   + S + +G   I  +P+          +P   
Sbjct: 713 ATGRKYGGTGLGLSICREFARLLGGTICLDSTVGKGSTFILYIPSLPNGMTATEEVPASE 772

Query: 486 HEST 489
            E+ 
Sbjct: 773 SEAA 776


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
          Length = 1331

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1058

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/254 (37%), Positives = 149/254 (58%), Gaps = 8/254 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  ++    +   E +++AE  N AKSRF+A+MSHELRTPLNAILGFS+++   T  P  
Sbjct: 577 LEKQVIQRTAELAEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRSTTLP-- 634

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
              ++E I  I+RSG++LL LIN IL L++IEAG+  L+ S   L  ++ E   +  L A
Sbjct: 635 -PEHQENIQIINRSGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAA 693

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--G 400
           ++KN+ +  + D ++   +  DE  +R+V++NLLSNA+KFT   G + V V   S +   
Sbjct: 694 KKKNLNLTFERDKTIPQYIRTDEVKLREVLINLLSNAIKFTPR-GDILVDVQTLSQKPIT 752

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++KD G GI   E+  +  +F Q   + K++++G GLGL I++  +   GG+  + S
Sbjct: 753 LLFTVKDTGVGITPEELDILFDAFSQT-QSGKNSQEGTGLGLAISRQFVELMGGELTVDS 811

Query: 461 KLREGVEVIAILPN 474
           ++  G      LP 
Sbjct: 812 QIAVGTIFRFTLPV 825


>gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
 gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   + +  ++++  I    Q 
Sbjct: 355 ELKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAM--EDPQLRQQFLSIILTESQR 412

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           + +LI ++LDLS++E   ++LS  ++ L  ++ E   +L  RA EK I +     P  + 
Sbjct: 413 MESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAW 472

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D + + QV +NL+ NA+ +T  GG VHV++         + ++D G GI   EI  +
Sbjct: 473 IDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEE-TITVHVQDTGIGIDSDEISRI 531

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  H G+  ++S++ +G      L
Sbjct: 532 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKL 583


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 1331

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 1508

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 10/271 (3%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            L +S    +     +  L+   ++ +   +  R+ AE  + AKS FLA+MSHE+RTP+NA
Sbjct: 842  LLRSLADQVGIALAQAKLLEGEKLQREELEIARQEAELASQAKSAFLANMSHEIRTPMNA 901

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +LG + ++    +    N   +++   I  SG  LL LINEILDLS++EAG   L     
Sbjct: 902  VLGMTGLLLETNL----NREQRDFAETIRISGDALLCLINEILDLSKLEAGEMFLETLDF 957

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L   V E + +L  +A ++ +EI           +  D   +RQ+++NL+ NA+KFT+ 
Sbjct: 958  DLSTCVEEVLELLAPQAHKQELEIAGLIHRNVPVHLQGDASRLRQILMNLVGNAIKFTST 1017

Query: 386  GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             G + V     S        + S+ D G GI+  +   +   F Q   +I     G GLG
Sbjct: 1018 -GEIVVRAELLSQTPNTVTIHFSVTDTGIGISSEDQNKLFQPFTQVDASITRKYGGTGLG 1076

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I+Q +++  GG   + S+L +G +    L
Sbjct: 1077 LAISQQLVSLMGGTIGVNSQLGKGSQFWFKL 1107


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 11/274 (4%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + +    I + + A+    ++++ AE  N AKS FLA+MSHE+RTPLN ILG  ++++  
Sbjct: 563 RVQISLDIGQRKQAEEALRQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT 622

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 N+  KEY+    RS   L  L+++ILD+SRIEAGR ++ E+   +  +      
Sbjct: 623 ----DPNDEQKEYLLGAIRSTNRLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISE 678

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393
           +  + A+ K + +  + + +L   +  DE  +RQ++ NL+ NA+KFT   G + +     
Sbjct: 679 LFDMEARGKGLLLEFRWNDNLPLRLIGDEVRLRQILFNLVGNAIKFTEK-GTIRIDACLL 737

Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                S     +++ D G GI+E  +  +   F Q   +     QG GLGL I + ++  
Sbjct: 738 PRASDSSVRVLVTVGDTGIGISEEHLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKL 797

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             G   I S   EG      LP          + 
Sbjct: 798 LDGDISIDSTPGEGSTFYLSLPFKLPATSQKTEE 831


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 14/275 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   +  +N            L A +  A +++ E    A+  N AKS FLA+MSHE+RT
Sbjct: 295 LINLVEDANRARNELMNANRKLEASIARANTMASE----ADAANKAKSEFLANMSHEIRT 350

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G SE++   T+    ++  K++   I+ SG++LL+L+N+ILD S+IEA + E+ 
Sbjct: 351 PMNGVIGMSELLLRSTL----DKEQKKFAETINASGKNLLHLLNDILDFSKIEADKLEIE 406

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           E   +L+D++ E I M   +A +K +      D  +   +  D   ++Q+++NL+SNA+K
Sbjct: 407 EIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLLLRGDPGRIKQILVNLISNAIK 466

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G + V V              ++ D G GI E  +  +   F Q   +      G
Sbjct: 467 FTDE-GEILVNVELEEDFGDNARIRFTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGG 525

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I+  +  N GG+  +RS   +G      +
Sbjct: 526 TGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSI 560


>gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 8/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +V +    + R+ A     +KSRFLA+MSHE+RTPL+ ILG +E++E   +    +
Sbjct: 116 ITDQKVTEEHLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----D 171

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  I  SG+ LL LIN+ILD S+IEAG+  +      L ++V + + M+ L+A 
Sbjct: 172 EEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAH 231

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K++E+   I   +   V  D   +RQ+++NL +NAVKFT  G    RV +         
Sbjct: 232 KKHLEVVVDIGEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAW 291

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI E +   +   F Q   +      G GLGL I++S++    G+  +RS
Sbjct: 292 VAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRS 351

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  EG     +LP   V ++ P
Sbjct: 352 REGEGSSFWFLLPLPIVESYEP 373


>gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   + +   +++  I +    
Sbjct: 354 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--EDKQALNDFLSIILKESDR 411

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS+IE   + LS   + L D++ + + +++ +A EK I    + D     
Sbjct: 412 LQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVY 471

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++QV +N++SNA+ +T   G ++++   T        I+D G GI   EIP +
Sbjct: 472 IEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKTGSTVLT-EIRDTGIGIEASEIPRI 530

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   ++S++ +G   I  LP 
Sbjct: 531 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELPK 584


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1209

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 22/295 (7%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +    ++  + + +    EL V      E  ++A E + AKS FLA+MSHE+RTP+NA
Sbjct: 507 LAQDVTALMEKEQDLEQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNA 566

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G +E+     + P      KEY+  I  S + LL L+N+ILD S+IEAG+ +L     
Sbjct: 567 IMGMTELAGNTELTP----EQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDF 622

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           SL + V   +  + + A +K +E+  +++P +      D   +RQV++NL+ NA+KFT  
Sbjct: 623 SLRETVHNAVYSVAMLAHQKGVELVVRVEPDMEDGFKGDPDRLRQVLVNLVGNAIKFTQQ 682

Query: 386 GGRVHVTVGWTSGRG----------------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            G V V V   +                       + D G GIA  +   +  +F Q   
Sbjct: 683 -GEVQVEVRLAAAEEMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADG 741

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           + +    G GLGL I+  ++    G+  ++S+   G     +LP     +   E 
Sbjct: 742 SSRRKYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLPLEPGEDAQKEQ 796


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1331

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 211/475 (44%), Gaps = 25/475 (5%)

Query: 6   KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65
           + +   V  +         L   ++ +  R++     +SLF +S  + +   + A I   
Sbjct: 4   ERRAIGVSAVSQEAR----LARKTEEEVTRDLAVTFRDSLFPISICIAVLFAIFAAI-HP 58

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
           F   P   +W +      +A  ++    +     I   Y      ++    +      + 
Sbjct: 59  FILPPELRLWMVGVALSGSAASAI-IAFLAGRNLIAAPYAPVAGFVLVAFCLLNSTAHMY 117

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L      +  Y  +  +  L     +    +F+L   V+      +  L      +    
Sbjct: 118 LTGDENQSTNYGLLLVAMGLFFLSRLYLALSFVLILGVWAGTAHFMGGL------NGEGF 171

Query: 186 DISLAGMLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-- 242
             +    L   ++     I   +++  + +    AE++  +A+           + R   
Sbjct: 172 HFAFMMFLGMVIAILAQEIRVRIYRRVISMREEAAERERSLAQA--------LAKTRLYA 223

Query: 243 --EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E EN AK+ FLA+MSHELRTPLNAILGFSE +++E  GPL +  Y EY+ DIH +G H
Sbjct: 224 SMERENKAKTEFLANMSHELRTPLNAILGFSEAMQMELFGPLGHPRYVEYMHDIHHAGTH 283

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL+L+N+ILDLSRIE     L+   I    +   C+ +++ RA+   +++  +  P    
Sbjct: 284 LLSLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLIFECAPPFPE 343

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE+ ++QV++NLLSNAVKFT  GG V + V      G  I I+D G G++E E+   
Sbjct: 344 VETDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAPDGGGIIRIRDTGIGMSETEVEQA 403

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L  F Q    +  + +G GLGL +   ++   GG   I S+   G  V   LP +
Sbjct: 404 LRPFWQADAGLDRSFEGAGLGLALVSELLQLMGGSITIESERGAGTLVTVGLPPS 458


>gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 704

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/418 (30%), Positives = 193/418 (46%), Gaps = 18/418 (4%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
             +    Y A +    +          +Y       +  +       +   + PGT T  
Sbjct: 289 LFLVAPAYYAFICYLFREGRVVWVDKLIYGVSAVFCLFALL------VAPFMAPGTVTLL 342

Query: 136 YLTIYKSATLLIALSISALSNFMLPY---AVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               ++    +I L++       L     A   +   ++ A+   A   +  + I  A M
Sbjct: 343 REP-FQLLWAVIILAVGVTILRTLLMEKEARRDALAVLLAAMVYFAYEVLTSMKIIGASM 401

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEE 245
             + L        H+    +K    + E+D L   L  A ++ +            AE+ 
Sbjct: 402 ELSNLLIVFVTMLHIRAFMLKYRRVEGERDTLHRTLRDANAVLEARADELTRALMAAEQA 461

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +LAKS FLA+MSHELRTPLNAI+GFSE ++LE  GPL +  Y EY  DI+ SG HLL+L+
Sbjct: 462 SLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLGHGKYAEYAKDINNSGTHLLDLV 521

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           ++ILD+SR+E+G   L+E  + +  + R  +     +A +  +      D  L  V+ADE
Sbjct: 522 SDILDISRVESGTDALNEEEVCIESVARAVLAATAAQAGKAEVVCRLDADAGLPPVFADE 581

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + +RQ++ NL+ NA+KF   GG V VT+         I++ D G GI   +IP  L  FG
Sbjct: 582 RKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGY-RIAVADTGIGIVAEDIPKALARFG 640

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q     +   +G+GLGLPI Q +   HGG F I S    G  V   LP  R L   P+
Sbjct: 641 QLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGRGTTVTITLPRERCLPSAPD 698


>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 1205

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 8/341 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           +I  +   +       A      P                +     +          ++ 
Sbjct: 456 VIHDAREVVMRAAALTAELGVPVPAGFETFVAKARIRVPDEGEWTYIRKDGTRLPVLLSV 515

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +    L+        I E    ++     +++AE  N AK  FLA+MSHE+RTP+N
Sbjct: 516 TGLTNAEGALTGFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+G S ++    +      + ++ +  I  SG+ L+++I +ILD S+IEA R +L E  
Sbjct: 576 GIIGMSGLLLETKL----ESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEET 631

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
            SL  ++   + +L  + Q K + +   +DP +  S+  D   +RQ++ NL+ NA KFT 
Sbjct: 632 FSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTD 691

Query: 385 IGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G     + V  G         ++ D G G+   +I  +   F Q   +      G GLG
Sbjct: 692 EGEVNLFISVARGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLG 751

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           L I++ ++   GG   + S   +G      LP        P
Sbjct: 752 LVISKRLVEMMGGAIHVESTPGKGSRFFFRLPARHSAPEEP 792


>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1187

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 10/286 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           Y+ Y  F   + I+           EL+   +   E R  AE  N AKS FLA+MSHE+R
Sbjct: 436 YLIYSAFVFILAIILLAYTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSHEIR 495

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI+G S ++    +        K YI  +HRS + LL L+N+ILD S++EAG+ EL
Sbjct: 496 TPMNAIIGMSHLVLESELNKH----QKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLEL 551

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +  SL +++ + I +L +++Q+K++++   +D +L   +  D   ++Q+ILNL  NA+
Sbjct: 552 ERTPFSLDELLDQAIDILSVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAI 611

Query: 381 KFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G+V + +       QY    + ++D G G+  G++  +  SF Q   +      
Sbjct: 612 KFTHQ-GKVTLRLNLLHKTKQYSTLELVVEDEGIGMTPGQLNKLFNSFSQADTSTTRKYG 670

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           G GLGL I ++I+    G   + S L +G               +P
Sbjct: 671 GSGLGLAITKNIIDLMKGTISVTSTLGKGSTFKVQFELEYCNEDVP 716


>gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 742

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + A     + ++ AE  N  KS FLA++SHELRTPLN+I+GFS+++  +  G L NE   
Sbjct: 480 KKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGEL-NEKQL 538

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y G+I +SG+HLL+LIN+ILDLS++EAG+ EL  +   L   +     +L   A  K+I
Sbjct: 539 RYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAPIADRKSI 598

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +I  ++D  L++++ADE    Q++ NL+ NA+KF +    V+V      G    I++ D 
Sbjct: 599 QIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVGARM-KGDKVEITVTDI 657

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +   +   F Q         QG GLGL + + I+  H G    RS   EG   
Sbjct: 658 GAGIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRSVPGEGSTF 717

Query: 469 IAILP 473
              +P
Sbjct: 718 AFAIP 722


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 14/264 (5%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E D  + E E  + L++E    A+E +  KS+FLA+MSHE+RTP+  ++G +E++    +
Sbjct: 706 ENDLQMQERENTRLLANEA--AAKEASRLKSQFLANMSHEIRTPIAGVIGMAELLTDMNL 763

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +E  +E   +I RS   LL +IN+ILD S++E+GR ++ E   SL  +VR+   ML
Sbjct: 764 ----DEEQQECAENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVVRDVSKML 819

Query: 340 QLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              A+ KN+     I         V  D   +RQ+I NLL+N++KFT+  GRV  +V   
Sbjct: 820 GFAAERKNLMFDSDITVGVDKDLIVMGDPGRVRQIITNLLTNSIKFTSE-GRVKFSVIKE 878

Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                 I +K    D G GI E     +   F Q   +      G GLGL I+++++   
Sbjct: 879 REDADTIEVKFVVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLM 938

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
            G+  + S L +G      +P  +
Sbjct: 939 HGRITLESSLGQGTTATFWIPFNK 962


>gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 727

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 19/322 (5%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           + +  +  +  G++         +          +L           E   A+    +  
Sbjct: 256 LGIFPIPATNGGIIGVLTLESRNLEQLQAYPQRDMLYAACRTLGTAIERAQAQDRLRQIN 315

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  E  +  KS FLASMSHELRTPLN+ILGFS++++ +  G L N     ++  I +SGQ
Sbjct: 316 EDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGEL-NHRQINHVKLIEKSGQ 374

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+ILDLS+IEAG+ EL+  A+ +  +  EC+ M+Q RA +K + +  ++D  L+
Sbjct: 375 HLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRADKKRLALSLELDYRLN 434

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------------GQ 401
            V  DE+ +RQ+I+NLLSNAVKFT   G + ++     G                     
Sbjct: 435 QVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGDYRPDCSPVNASTPYL 494

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D+G GI E     +   F Q   ++    +G GLGL + + +   HGG   ++S 
Sbjct: 495 CLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTKRLAELHGGTVSLQSD 554

Query: 462 LREGVEVIAILPNTRVLNFIPE 483
           + +G      LP T +   + E
Sbjct: 555 VNQGSRFRVWLPLTEMRQTLAE 576


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +       N  I    AE  + +  +E+     D  RK A + +  KS FLA+ SH
Sbjct: 220 LAAKLKGAQDNLNYSIEQTTAELRETLETVEIQNIELDIARKGAIQASKVKSEFLANTSH 279

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ILGFSE+++   + PL     ++Y+  I+ S + LL +IN+ILD SR+E G+
Sbjct: 280 EIRTPLNGILGFSELLKKTELNPL----QEDYLETIYESAKGLLTIINDILDFSRLETGK 335

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L    + L  ++ E + +    A EK + +   +D  +   +  D   ++QV+ NLLS
Sbjct: 336 LTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIVDHDIPEHLLGDPLRLKQVLTNLLS 395

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT + G + ++V               I D+G G+ + +   +  +F Q   +   
Sbjct: 396 NAIKFTNV-GHILISVSKEDRADNQITLQFRITDSGIGLNQDQQEKLFDAFTQLDASDSR 454

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL IA+ ++    G+  + S+  +G      
Sbjct: 455 THGGTGLGLAIAKGLVDRMHGEIGVESEPGKGATFWFT 492


>gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1062

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 129/257 (50%), Gaps = 11/257 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + +++     + +AE  N AKS FLA+MSHE+RTPLN ILG  ++++        N
Sbjct: 664 INERKRSQADLLSAKLQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTT----EPN 719

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+    RS + L  L+++ILD+SRIEAGR ++ E+   +  +      +    AQ
Sbjct: 720 EEQNEYLTGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYTEAQ 779

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K + +    D  L +V   DE  +RQ++ NL+ NA+KFT   G V V V          
Sbjct: 780 GKGLVLDFIWDDELPTVLIGDEARLRQILFNLVGNAIKFTDK-GEVLVEVSLLPNSNFSS 838

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GI E  +  +   F Q  I+     QG GLGL I + +++  GG   I
Sbjct: 839 VRVLFTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDISI 898

Query: 459 RSKLREGVEVIAILPNT 475
            S L EG  V   LP  
Sbjct: 899 DSALGEGTTVYLSLPLK 915


>gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina
           NCIMB 400]
 gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 952

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               I     +LI +  +    F L   V     P+   +   A +    LD  L G L 
Sbjct: 202 HRAAIAAFIIVLIGVQFNLFFTFRLVKHVNY---PITEMVRVVAKIREGKLDTRLEGNLI 258

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 259 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDIAKKRALEAS 318

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 319 RIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHT----SQLDYIKTIERSASNLLGIIN 374

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L +   +L + + E + ++   AQEK +E+   ID ++   V  D 
Sbjct: 375 DILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSAQEKGLELVIDIDANVPESVSGDA 434

Query: 366 KGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G  +  + +         +   + D G GI E +   +  
Sbjct: 435 MRVSQIITNLVGNAIKFTDKGSVILKIHLVGQDEDNITLRCEVIDTGIGIDESQQEYLFQ 494

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G     ILP 
Sbjct: 495 AFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGFTSAPNKGSNFWFILPL 546


>gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes]
          Length = 538

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 11/267 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A++      KRAEE +  K  FLA+MSHE+RTPLN I+GF  ++  E +    N+  +E
Sbjct: 254 RAQNALRVALKRAEEADRVKGVFLANMSHEMRTPLNGIIGFGRLLLEENL----NQEQRE 309

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I +SG+HLL +IN+ILDLS+IE+G++EL    + L + +R      +++A+EK ++
Sbjct: 310 YVEIIDKSGEHLLGIINDILDLSKIESGKFELESLPMKLSEELRAVADFCEVKAREKGVK 369

Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----S 404
           +     +     +  D   ++QV  NLL NA+KFT  GG V + V     R + I    S
Sbjct: 370 LLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEGGEVRLGVEVLEEREEAIALDFS 429

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GIA   +  +   F Q   +      G GLGL I+Q ++   GG+   +S+  +
Sbjct: 430 VSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGLSISQELVRLMGGEMRCQSEEGK 489

Query: 465 GVE--VIAILPNTRVLNFIPEDNHEST 489
           G        LP  + L     +  +  
Sbjct: 490 GSRFSFTLTLPKAKGLTQAEREIPKEA 516


>gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
 gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
          Length = 931

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 239 AMAISLSEYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +   ++    +E  ++Y+  I RS  +LL +IN+ILD S++EAG
Sbjct: 299 HELRTPLNGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAG 354

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        D + E + +L   A EK +EI  KID  + S +  D   ++QV+ NL+
Sbjct: 355 KLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLV 414

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NA+KFT  G   + V +   +         ++D G GI+E +   +  +F Q   +I  
Sbjct: 415 GNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISR 474

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I Q +++  GG+  + S+L +G      +
Sbjct: 475 RYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTI 513


>gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
 gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
          Length = 577

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 16/287 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 + ++++   A++              ++    AEE +  KS FLAS +HELRTP
Sbjct: 276 HRSWSPAEIELVQELADQVGTAIAHATLYQELEQATHAAEEASRLKSEFLASTTHELRTP 335

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I+GF ++I        ++E  +E++ + H+S  HLLNLIN+ILDL++IEAG+  L  
Sbjct: 336 LNGIIGFLKLILDGM--ADDSEEQQEFLEEAHKSALHLLNLINDILDLAKIEAGKMVLEL 393

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVK 381
             + L +++         +A++K +    K   +    +++ + + + QV+LNL+ NA+K
Sbjct: 394 EPVDLEELLTAVNNFTAPQAEQKGLTFKIKKPQTHTPITLYGNYQRLLQVMLNLVGNAIK 453

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT  GG + V+                    IS+ D G G++  +   +   F Q   + 
Sbjct: 454 FTHEGG-IVVSAEIVKKKILCHEQEFPGIVKISVADTGIGVSLEQQAKLFEKFVQIDGSR 512

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477
             A  G GLGL I+Q ++   GGQ    S     G  V    P   V
Sbjct: 513 TKAYGGTGLGLAISQKLVQAMGGQIDFYSMGEGLGATVTFTTPLQEV 559


>gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 748

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 15/282 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + + + ++   +LE   +     +  AE+ N AKS FLA+MSHE+RTPLNA++GFSE+++
Sbjct: 409 NLEEKVEERTKKLEKTNTELKYAKIEAEKANEAKSEFLANMSHEIRTPLNAVIGFSELLK 468

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   +E +K YI  I+ +G  LL +IN+ILDLS+IEAGR EL    + L +I RE 
Sbjct: 469 NTI----KDEKHKSYIETINVAGNSLLTIINDILDLSKIEAGRIELQYKPLKLSNIFREI 524

Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             + + + + KNIE    I      S+  DE  +RQ++LNL+ NAVKFT   G V +++ 
Sbjct: 525 KYIFKQKTKSKNIEFLLDIQEDFDESILLDEVRIRQILLNLVGNAVKFTDK-GYVKLSLK 583

Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            T+ + +      ISI+D G GIAEGE   +  +F Q S        G GLGL I + + 
Sbjct: 584 GTTSQNKSSVDFRISIEDTGIGIAEGEREKIFDAFKQASGQSIKKFGGTGLGLSITKKLT 643

Query: 450 ANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIPEDNHES 488
               G+  + S   +G          P       +PED   +
Sbjct: 644 EIMQGKIFVESIEGKGSTFYVEFYNVPIA-ATEELPEDTSTA 684


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 13/330 (3%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            +   L T  I+   V  I     L    + F+   +   +   + +  + E+D  + +L+
Sbjct: 1073 MAAYLGTPIIVGNEVYGILAFYSLKPRRTAFSSSDHEFLRLMAQWIGAEIERDRYLKQLQ 1132

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                     R +A E +  KS FLA+MSHE+RTPLNA++G SE++    +    NE   +
Sbjct: 1133 RISDELALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPL----NEEQAD 1188

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +   I  SG+ LL++IN+ILD S+IEAGR  L      L+ +V   I M     Q+KN+ 
Sbjct: 1189 FARIIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLH 1248

Query: 350  IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK- 406
            +F  I P +   V  D   +RQV++NL+ N VKFT  G   V +++         + ++ 
Sbjct: 1249 LFGWIAPDVPNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEV 1308

Query: 407  -DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G G++E     + T F Q   ++     G GLGL I++S++   GG+  + S   +G
Sbjct: 1309 HDTGIGLSETARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQG 1368

Query: 466  VEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
                  +     L+  PE    S +++ +A
Sbjct: 1369 STFWFTV----TLSVRPE-QPASVEWEAFA 1393


>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 916

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 185/441 (41%), Gaps = 29/441 (6%)

Query: 55  FVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLL 111
             LL A      +        + S+    +   +     +     +           +L 
Sbjct: 220 VGLLAACFDGMLFKLLPEHVALQSVSIYILMYVHCLTAIQFSRHFLHAPQYFPRLDTYLR 279

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           +  +    C   + L+    W           +L++ L+   +    + Y  + +    +
Sbjct: 280 LMMLICVGCLLSVPLIGFAAWNILASVTVSLVSLILLLTGIYVWRRGVRYGSYYTLAWAI 339

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +  +     +  +    L    AT +                 +        L   + + 
Sbjct: 340 LLFAFIQATTGSLGLEVLGVFGATVVKIGV------------TIELITLSIGLADRINLL 387

Query: 232 KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           K    ++R+ AE+    + AKSRFLA MSHE+RTPLN +LG  +++    M    + + +
Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPM----DRSQR 443

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  SG  L+ +IN+ILD +RIE+G+  L +    L D++ E + +   +A +K +
Sbjct: 444 FYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRL 503

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
            ++  ++  +   +  D   ++QV++NLLSNA+KFTA  G V V+V   S          
Sbjct: 504 RLYVSLENGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHGKPHLVF 562

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D+G GI+E  +  +  SF QG  +      G GLGL I++ ++   GG+  ++S L 
Sbjct: 563 AVSDSGIGISEQALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTLG 622

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           +G      +P        P++
Sbjct: 623 QGTRFAFDIPL-LNEQDAPDE 642


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 914

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 174/455 (38%), Gaps = 42/455 (9%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
           + L +         F + P    + + +L      L     +      +         + 
Sbjct: 191 VLLALFCCQLFLFLFLREPSQGWYLVYSLNSILLALGFDGYLFQWPPGLQH-------IT 243

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           V  +      T   L       P+Y  +      L  L + A+        +        
Sbjct: 244 VLLLIFSFWLTATQLTRHFLNIPQYFPLLDRILRLWMLGLGAVLLAAPLIGLSAWTTLAH 303

Query: 172 VALSTQAIMSM----------------HVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
            A    A++                  H+   +L  +     +F       L +    + 
Sbjct: 304 FATLIGALLLPSCGAHVWRKNLRAGAYHLTAWALLLVSLGGQAFAELGLDLLGEHATMLA 363

Query: 216 SCQAEKDDLI------AELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNA 266
                 + LI         +  +     + + AEE    N AKSRFLA MSHE+RTPLN 
Sbjct: 364 KIGIASNLLILAVGLADRFQQLRREGLYSHRAAEEALLQNQAKSRFLAKMSHEIRTPLNG 423

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  ++++   +      + + Y+  I  SG  L+ +IN+ILD +RIE+G+  L     
Sbjct: 424 VLGMLQLLKETRLDH----SQRFYVDTIASSGSTLMAVINDILDYARIESGKLSLEHIEF 479

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L +++ + + +   +A EK + +   +D  +   +  D   ++QV+ NLLSNA+KFT+ 
Sbjct: 480 DLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPRHIQGDPTRLKQVLTNLLSNALKFTSE 539

Query: 386 GGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G+V + V            Y  + D+G GI +     +  SF QG  +      G GLG
Sbjct: 540 -GQVRLDVSRRRKSDGSEHLYFGVSDSGIGIRQEAQARLFESFSQGDSSTTRRYGGSGLG 598

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           L I++ ++   GG   ++S    G      LP  R
Sbjct: 599 LAISKELVEMMGGHIEVQSTPGLGSRFTFNLPLQR 633


>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 919

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISGVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLTIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + + + +L   + +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  +F 
Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQTRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586]
 gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586]
          Length = 927

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 162/351 (46%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDALKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        DI+ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   S R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
 gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
          Length = 643

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 185/437 (42%), Gaps = 9/437 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              + ++ +       +  +     +   W    +    A  ++G     +   +     
Sbjct: 140 TIAASVIAVLGAFAVALSGYLPVGSLALAWPNAVVMPVFAVTAIGHIAAQAMEHMRREGE 199

Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           WR  +   +    L  + +  LV         L    SA   +    S L    L   V 
Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--- 221
           +   P ++   +          +     L    +  +   Y   +++             
Sbjct: 260 IGDRPALLQAISDVAAHGMPATVPFRLHLDAPRADGSRTIYAEMRAHRIEAGLAGANGST 319

Query: 222 ----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++E        D  R  AE  +  K+ FLA++SHELRTPLNAI+GFS+V+  E
Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGE 379

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L+ E  +EY G I +SG+HLL+++N +LD+SRI  G ++     + +  ++R C  
Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCD 439

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++L+A    I +     P+  ++ AD +  RQ+++NL+SNAVKFT  GGRV V V    
Sbjct: 440 LMRLKADASGIALVSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    + + DNG GI E ++P +   F Q       + +G GLGL + + +   HGG   
Sbjct: 499 GAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 458 IRSKLREGVEVIAILPN 474
           + S   +G  V   LP 
Sbjct: 559 VESAPGKGTAVTVTLPL 575



 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 18/191 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV-WRIWLLV 112
             +  +A         P + +W  +   + A  ++     + + + +      W    L 
Sbjct: 39  FLISRLATGAVMMAGLPPYLVWRGVPSGIEALAIASLFLPLVAAVILSRTGSLWIAHALS 98

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
                G+   L  L    +       +      +I+ S  A     +   +      +  
Sbjct: 99  SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMISGSRRATIAASVIAVLGAFAVALSG 158

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231
            L   ++       + +     TA+                        + +  E E  A
Sbjct: 159 YLPVGSLALAWPNAVVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202

Query: 232 KSLSDETRKRA 242
           +   +E R R 
Sbjct: 203 RMQDNEARDRL 213


>gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
 gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
          Length = 1182

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 14/253 (5%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           +   S E ++ AE  N AKS FLA+MSHE+RTP+NAI+G +++     +   + E ++EY
Sbjct: 539 SNKQSQELKEEAEAANTAKSEFLANMSHEIRTPMNAIIGLAQL----GLKDKSGEKHEEY 594

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +S ++LL +IN+ILD S+IEAG+  + +    L +++ +    L+ R   +N+++
Sbjct: 595 LYKIKQSSENLLTIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGGTLRGRMTNRNVDL 654

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
                 S   V  D   + QV+LNLL NA+K+T   G V ++V     +        S++
Sbjct: 655 IFPGPLSYKLV-GDPLRLEQVLLNLLGNALKYTRK-GHVILSVDEKELKEDSICLQFSVE 712

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+++ +   +   F QG  +      G GLGL I++ I+   GG+  + S   +G 
Sbjct: 713 DTGIGLSDTQRNRLFQPFAQGDTSTTRKYGGTGLGLSISKKIVKYMGGEIWLDSMPHKGS 772

Query: 467 EVIAI----LPNT 475
                    +P  
Sbjct: 773 VFCFTANFEIPLE 785


>gi|16330815|ref|NP_441543.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1653308|dbj|BAA18223.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 674

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 157/366 (42%), Gaps = 25/366 (6%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +    +L+ L  +AL    +         P+++       +S    +     +    L  
Sbjct: 307 FTRMLVLVGLVSTALLLIAVYLLSIKITKPILLITKAAIDISSGDREARAPVLGEDELGI 366

Query: 200 FT----YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-RKRAEEEN-------- 246
                  +T  L +SN  +     E +    +L VA S  +E  ++R EE          
Sbjct: 367 LAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKALEL 426

Query: 247 ---------LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                      KS FLA+MSHELRTPLNAI+G+SE++  E    L++E     +  I RS
Sbjct: 427 ASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAED-LDSEELVPDLDKILRS 485

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ LL LIN++LD+S+IEAG+ EL     +L +++   +  +    +  N ++  +I   
Sbjct: 486 GKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLE 545

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
              V+ D   +RQ ILNLLSNA KFT  G    +               +KD G G+ E 
Sbjct: 546 SEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEE 605

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +   F Q   +      G GLGL I +      GG   + S++  G      LP  
Sbjct: 606 QMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLPKY 665

Query: 476 RVLNFI 481
             LN  
Sbjct: 666 AQLNSA 671


>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 763

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 12/328 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P+ V      + +       +          +  I     +     ++        I+E
Sbjct: 199 LPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITSYCSIIQDISE 258

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + A+    + ++ AE  N AK+ FLA+MSHE+RTPLNAI+G + +    ++        
Sbjct: 259 HKQAEENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMTSL----SLLSNPEPDQ 314

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           KE +  I  +G  LL++I+ ILD S+IEAG+  + +   +L +++ + I + + RAQEK 
Sbjct: 315 KENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTVEKINFNLHELIEKNITIHKARAQEKG 374

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYI- 403
           + +   IDP++   V  D   ++QV  NL+ NA+KFT   G V V +           + 
Sbjct: 375 LLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAIKFT-DHGEVEVRLKLLDIFDDHIVLQ 433

Query: 404 -SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI  G+   +  SF QG  +I     G GLGL I++ I+    G+  + S +
Sbjct: 434 ASVADTGRGITAGQQEKMFESFYQGDSSISRTYGGTGLGLNISKKIVEMMQGKIWLESDI 493

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G            +    +   ES Q
Sbjct: 494 ESGSTFYFT--VELGIPESSKLEAESNQ 519


>gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1105

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            + I E + A+    + +++AE  N AKS FLA+MSHE+RTP+NA+LGFSE++       
Sbjct: 594 QEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELLSELV--- 650

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  K Y+  I  +G+ LL LI++ILDL++IEAGR ++   A++  +I  E   +  L
Sbjct: 651 -TNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQIFVL 709

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +  +K ++    ID +L  ++  DE  +RQV+LNL+ NAVKFT   G + +         
Sbjct: 710 KIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEK-GYIKLGAQKIDKMD 768

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  IS++D G GI   +   +  +F Q          G GLGL I + ++    G 
Sbjct: 769 KSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMMNGD 828

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             +   + +G      L   + ++  P     +TQ
Sbjct: 829 ISVTGTVGKGSIFNISL---QDVDISPTLVPANTQ 860


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 29/294 (9%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------ENLAKSRFLASMSHE 259
           +  +    +  +L  +LE  K L +E + +                N+AKS+FLA+MSHE
Sbjct: 118 LARIRIHLKLYNLTRKLEQQKQLLEE-KVKLRTVELLAAKEAAEAANIAKSQFLANMSHE 176

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+G+SE+++ E       +   + +  IH +G HLL LIN+ILDLS+IE+G+ 
Sbjct: 177 LRTPLNAIIGYSEMLQEEAEDLAQEDLIPD-LKRIHGAGTHLLGLINDILDLSKIESGKV 235

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL    +++  ++RE IIM++   ++    +      +L  +  D   +RQ + NLLSNA
Sbjct: 236 ELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKVRQSLFNLLSNA 295

Query: 380 VKFTAIGGRVHVTVGWTSGR--------------GQYISIKDNGPGIAEGEIPTVLTSFG 425
            KFT   G++ + V     +                   + D G GI+   +  +   F 
Sbjct: 296 CKFTKK-GKITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGISPERMEKLFQPFT 354

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           Q   +      G GLGL I + +    GG   + S++ +G     +LP   +L 
Sbjct: 355 QADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLPAEVLLP 408


>gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 470

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 155/343 (45%), Gaps = 17/343 (4%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----- 195
                +  +    +   +  +A        ++ +    ++S  V  I    +++      
Sbjct: 137 VLTVGVPLVINGRIEGAIFMHAPLTEMNKTIINIFILMLLSGGVALIIGFVLISYTSSKI 196

Query: 196 --ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L   +     + K N        E+D++    +    ++ E     E+    +  F+
Sbjct: 197 SQPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNVMAKE----LEQLEDMRKDFV 252

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A++SHELR+PL +I G+ + I     G +  E   +Y+  + +  + +  LIN+ L++++
Sbjct: 253 ANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQKETRRMSRLINDFLEMTK 309

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E+G++ L+++   + +++R  +I  + R  EK++ +    +     V AD+  + QV+ 
Sbjct: 310 LESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIADKDKIEQVLT 369

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NA+KF+   G +H+          +I+IKDNG GI+  +   +   F +   +   
Sbjct: 370 NLIDNAIKFSKEKGIIHI-FTEIKDDKAFITIKDNGIGISPEDQEHIWDRFYKADKS--R 426

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            + G GLGL I + I+  H  +  + S+L +G      LP  +
Sbjct: 427 GKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLPMKK 469


>gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
 gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
          Length = 580

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHEL+TP+ +I GFSE +    +   + E   E++  I +    L  
Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTEFLSIILKESVRLET 409

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++LDLS+IE  +++L+    +  +I++E  ++L  +A EK I++  ++      V A
Sbjct: 410 LIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYVMA 469

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++Q+ LNL++NA+ +T  GG V ++            + D G G+ + EIP +   
Sbjct: 470 DPLRLKQIFLNLVNNALTYTPEGGSVTISARPRK-GAYEFDVADTGIGMKKSEIPRIFER 528

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +          G GLGL I + ++  H G   +RSK  +G      L
Sbjct: 529 FYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSL 577


>gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 918

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++Q+I NL+ NA+KFT   G + + V   +         + I+D G GI E +   + 
Sbjct: 407 LRLQQIITNLVGNAIKFT-ENGNIDILVEKRAQSNTKVQIEVQIRDTGIGIPERDQSRLF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1122

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            Y      V+ L    E   L  E   ++   ++ R  AE  + +KS F+A+MSHE+RTP
Sbjct: 679 PYRWRDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTP 738

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           + AILG+++++       + +    E++  I R+G +LL +IN+ILDLS+IEAG+ E++ 
Sbjct: 739 MTAILGYADLVRD----MIEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNH 794

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
                  ++ +   ++++RA+E  + +  +    L   + +D K ++Q+++NL+ NA+KF
Sbjct: 795 EKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKF 854

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V + V +   +  +I I D G G+++ +   +   F QG  ++     G GLGL
Sbjct: 855 TQK-GWVQIRVRF--NKLLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGL 911

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I++ +    GG  +  S    G      
Sbjct: 912 AISKRLTEMLGGTIIASSTEGVGSTFTVS 940


>gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 421

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N  +  F++++SHELRTPL +I G++E +  +    ++ ET   ++  I      +  
Sbjct: 183 ELNEMRREFVSNVSHELRTPLTSIHGYAETLLNDP--DMDAETRDRFLKIIENESARMSR 240

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LDL R+E+G        I L  +V+  + + +  + + ++++    +    ++  
Sbjct: 241 LINDLLDLERLESGEARFDFQKIDLCSVVKYVVSITEPLSIDYDVKVEYDCEE--VTIDG 298

Query: 364 DEKGMRQVILNLLSNAVKFT--AIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTV 420
           D+  + Q++LNL  NAVK+T     G   V++       Q  I + D GPG+    +  +
Sbjct: 299 DQDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGMPRDALNRI 358

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              F +          G GLGL I ++I+  H GQ  + S+   G      LP  R+
Sbjct: 359 FDRFYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLPVERI 415


>gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 1003

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 11/248 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE  + AK+ FL  MSHELRTP+N I+G  E++    +    +E  + YI
Sbjct: 750 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTEL----DEDQQNYI 805

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  S   LL+++NEILD S+IE G   L+   I L  ++   + +   +A++K + + 
Sbjct: 806 HILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSLS 865

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405
                ++  V   D   +RQV++NL+SNA+KFT   G + ++V       T        +
Sbjct: 866 FINSANVPDVIIGDALRLRQVLVNLISNAIKFTHE-GSITMSVEGLRRTGTQEFTLAFQV 924

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GIA      + TSF Q   ++     G GLGL I++ ++   GG   + S+   G
Sbjct: 925 KDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENAG 984

Query: 466 VEVIAILP 473
                 +P
Sbjct: 985 SSFYFTIP 992


>gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
          Length = 648

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/293 (30%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              LA ++   +      T       +     + ++    A+LE      +   +     
Sbjct: 76  SALLAALIFYLICVAVLQTLRRRSMKLAEQQKKEQEQKYHAQLEEQNRKLELAVRHEAAA 135

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK  FL +MSH++RTP+NAI+GF+ +         N E   +Y+  I  S QHLL+LI
Sbjct: 136 NRAKREFLFNMSHDIRTPMNAIIGFTSLAATHV---DNKEQVLDYLKKISTSSQHLLSLI 192

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWAD 364
           N++LD+SRIE+G+ ++ E A+ L D+V +   ++Q     K + +F   +D     +  D
Sbjct: 193 NDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISSKRLSLFIDTMDVVDEDIITD 252

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPT 419
              + QV+LN+LSNA+KFT  GG V + +    G           IKDNG GI +     
Sbjct: 253 PLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCGNYEFRIKDNGIGINKEFQKH 312

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +  S  QG GLGL I ++I+   GG   + S+  +G E I  L
Sbjct: 313 IFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLESEPGKGSEFIVNL 365


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 12/301 (3%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLS 235
             +M      + L   L        ++  ++   + K    ++    +  I+ L++     
Sbjct: 967  HLMGDGADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSEEL 1026

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             + +  A+  + AKS FLA+MSHE+RTP+NAI+G S++    ++    ++  + Y+  I 
Sbjct: 1027 TQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSL----DKKQQNYVEKID 1082

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            R+ + LL +IN+ILD S+IEAG+ ++      L  ++ +   M  ++A +K +E+   + 
Sbjct: 1083 RASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVA 1142

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWTSGRGQYISIKDNGP 410
            P++   +  D   + QV++NL++NA+KFT   G V ++    V          S++DNG 
Sbjct: 1143 PNIPRHLVGDPLRLSQVLINLMNNAIKFTEQ-GEVMLSISQLVREDEEILLKFSVRDNGI 1201

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+ E +   +  SF Q   +      G GLGL I + ++   GG+  + S+   G     
Sbjct: 1202 GLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFF 1261

Query: 471  I 471
             
Sbjct: 1262 S 1262


>gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 915

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALVFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NPTQRDHLNTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L + + E + +L   A +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +QVI NL+ NA+KFT  G   + V     S     + +  +D G GI E +   +  +F 
Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQVEVQIRDTGIGIPESDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 778

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/291 (36%), Positives = 164/291 (56%), Gaps = 9/291 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRA 242
              + T ++        L  S  ++++   +      +LE  K+   +        ++RA
Sbjct: 480 LVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDANANYLAEKERA 539

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKS FLA+MSHELRTPLNAILGFSE+++ E  GP+ +  Y EY  DIH SG+HLL
Sbjct: 540 QAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSEYARDIHDSGKHLL 599

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           N+IN+ILD+S+IEAG   ++   I L  ++ E + +  ++A++KNI + QK+   L ++ 
Sbjct: 600 NVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQQKVCAGL-TMQ 658

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D + M+Q++LN+LSNAVKFT  GGR+ +           ++I D G GI    +  +  
Sbjct: 659 GDRRAMKQIMLNILSNAVKFTGDGGRIALRT-HVHEAAMILTIADTGIGIPAQALQKIGQ 717

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q       ++ G GLGL I++S++  HGG   IRS    G  V  I+P
Sbjct: 718 PFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTIIIP 768


>gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 611

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/506 (22%), Positives = 203/506 (40%), Gaps = 57/506 (11%)

Query: 40  LHVESLFRVSPILPLFVLLVANI-GTWFTQNPIFPM-----------WSLITLAVYAANL 87
            HV S    + ++ +  +    I         + P+                LAV     
Sbjct: 87  AHVLSSIAFAGLVMMIAIPTGGIESFAAVWLVVVPLEAALSASRRVIAFASMLAVSCVLA 146

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP------------------ 129
            +     +               +   IA    +                          
Sbjct: 147 LISISYFDVLPPSDAGAAAHGVFMAFGIASATLYAAGVAFGCEVLMRTGASLLNVEEDRY 206

Query: 130 -------------GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS- 175
                                 I  +A  L+ + +S L +  L   V ++  P  +    
Sbjct: 207 RLLARHMGDVISRHRRNGAVQFISPAAESLLGVPVSELQDHGLFDRVHVADRPAYLTTLA 266

Query: 176 ----------TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                      +  +       +      +    +  +     +S+             +
Sbjct: 267 AAALGKGAQSVEFRLRREAASDARFEAHLSGDFIWVEMRCQPLESSSPAEPEVVAVMREV 326

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + +  +   D  R  AE  + AK+RFLA+MSHELRTPLNAI+GFSE+I  E   PL+  
Sbjct: 327 TDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMIVQEATLPLDAT 386

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KEY   I+ SGQHLL+++N ILD+S++E+G +E+     +  +++     +L L+A++
Sbjct: 387 RRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKARD 446

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             IE+  ++  +L  +  D +  RQ++LNL+SNA+KFT  GGRV ++     G    + +
Sbjct: 447 NGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISA-RVEGARMVLRV 505

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GIA+ ++  +   F Q     +   +G GLGL I ++++  H G+  ++SK+ EG
Sbjct: 506 MDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEEG 565

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491
             V  +LP    L  +P+    S+  
Sbjct: 566 TTVTVMLPL--TLTLVPDAEPPSSNI 589



 Score = 37.9 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 12/212 (5%)

Query: 21  DHLGLEYPSKMDFD----REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
           D L         +D        T     L      L  F + +A  G           W 
Sbjct: 9   DRLDALLHPSARYDALTRARHRTFMAPRLLGSLVALAAFPMYLALRGAPTALEVAAFAWL 68

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           ++ + +       G+      +                + I +    +       W    
Sbjct: 69  VVPILLSYFLSRTGRYEGAHVLSSIA-------FAGLVMMIAIPTGGIE-SFAAVWLVVV 120

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
                 +     ++ +++       A+    +  V+  S     +  V            
Sbjct: 121 PLEAALSASRRVIAFASMLAVSCVLALISISYFDVLPPSDAGAAAHGVFMAFGIASATLY 180

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            +   +    L ++   +L+ + ++  L+A  
Sbjct: 181 AAGVAFGCEVLMRTGASLLNVEEDRYRLLARH 212


>gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 803

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 146/324 (45%), Gaps = 14/324 (4%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAEL 228
            +A   +   +      +   M      +   +     + ++              I++ 
Sbjct: 227 ALACLERHFTTPEEPYRAEFRMRTKQGGWCWILARGKVVARTADGQPHRMVGAHQDISQR 286

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +  ++     +  AE+ N AKSRFLA+MSHE+RTP+N ILG  E++      P       
Sbjct: 287 KQLEADLLAAKTEAEQANQAKSRFLANMSHEIRTPMNTILGMGEILLN---APNLTPKQH 343

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+    R+G  LL LIN+ILDLS+IEAG   L  +  +L D ++  I ML+  A++K +
Sbjct: 344 RYLSISQRAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMARDKGL 403

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            +   IDP L   V  D +  RQ++LNLLSNA+KFT   G + +            ++ D
Sbjct: 404 SMQCVIDPQLPTHVHGDPQRFRQIVLNLLSNALKFTDQ-GSITLHAKPIETGRLQFTVSD 462

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+ E  I  +   F Q          G GLGL I + ++    G+    S++ EG +
Sbjct: 463 TGIGMPEQVITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANSQVGEGSQ 522

Query: 468 VIAILPNTRVLNFIPEDNHESTQY 491
            I  +        +P  N E+ + 
Sbjct: 523 FIFEI-------ELPAANSETVKQ 539


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 11/279 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +    L  E E A +   E  +RA E + AKS F+A +SHE+RTPLNAI+G + +++   
Sbjct: 456 SRNIQLRKETEKAYA---EAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQSC 512

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                +   + Y+  +  S ++LL++IN++LD S+IE+G+ E+ ++ +S+  +VR+ + +
Sbjct: 513 ----TDPVQESYLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSI 568

Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396
            + +A+  N      IDP +  V   D   + Q++LNL+SNAVKF+  G  ++ V     
Sbjct: 569 NEPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERV 628

Query: 397 SGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            G       S++D G G+++ ++  +   F Q   +      G GLGL I + ++    G
Sbjct: 629 HGENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHG 688

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +    ++   G      L   +     P   H  T+   
Sbjct: 689 EIWAVTEEGVGSTFFFRLQLEKKDAATPAAQHPETKQSA 727


>gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 631

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +     +    E + A +   + R+ +E+ N AKS FLA MSHELRTP+N 
Sbjct: 219 LTDLARHINNLACALEQSGREQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNG 278

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E  ++    N+   EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 279 VLGMLQLLETTSL----NDEQTEYAALATESTEHLLKVINDILDFSRIERGALELEAIPF 334

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++++  + + Q  AQ++ +++  +  P L    V  D   +RQ+++NL+ NA+KFT 
Sbjct: 335 NLLELLQGSVQVFQHSAQQRGLQLLLETQPGLQQLEVRGDPTRIRQILVNLIGNALKFTE 394

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G++ V   W     Q +    ++ D+G GI    +  +  +F Q   +I     G GL
Sbjct: 395 E-GQIRVETRWQPLDDQVLWFTCAVHDSGIGIDAERLEHMFDAFQQADTSISRRYGGTGL 453

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLPIA+++    GG     S+L +G      +P 
Sbjct: 454 GLPIARTLAERMGGTLQAESQLGKGSVFTLEIPL 487


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +     + +L    E           ++   + R  AE  N AKS FLA+MSHE+RTP+
Sbjct: 829  KNWGDEEISLLRVLTELFTNAELRYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPM 888

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ++G + ++   ++     E  + +      SG+ LL +IN+ILD S+IEAG+ EL E 
Sbjct: 889  NGVIGMTRLLLNTSLA----EEQRSFAQTALASGESLLTVINDILDFSKIEAGKLELEEI 944

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            +  L  ++ +   ++ ++A +K +E      P +      D   +RQ++ NL  NAVKFT
Sbjct: 945  SFDLRLLLDDFAAIMAVKAGDKGLEFICAALPDVPVRFIGDPDRIRQILTNLAGNAVKFT 1004

Query: 384  AIGGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G   V+V++   +        S+KD G GI   ++  +  SF Q   ++     G GL
Sbjct: 1005 HKGEVAVYVSLLRETDEEVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGL 1064

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GL I++ ++    G+  + S+   G E    L   +
Sbjct: 1065 GLAISRQLVELMSGEIGVNSQSGIGSEFWFTLSLKK 1100


>gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
 gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
          Length = 845

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 141/287 (49%), Gaps = 12/287 (4%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +     I   + +  +     +     L   +            RAE  +  KS FLA+M
Sbjct: 554 VVEILSIGNDITERLLAEQEIRELNASLEKRVTERTEELQTALIRAEAADKIKSAFLATM 613

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+I+GF+ +I     GPLNNE  K+ +G +  S +HLL LIN++LD+S+IEA
Sbjct: 614 SHELRTPLNSIIGFTGIILQGLAGPLNNEQTKQ-LGMVRGSARHLLELINDVLDISKIEA 672

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ E++    +L+ ++   +  L    ++K + +   I   L  + +D + + Q+++NL+
Sbjct: 673 GQLEVNSETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEIVSDRRRLEQILINLV 732

Query: 377 SNAVKFTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +NA KFT   G + +T    +           R   +S+ D G GI   ++  +   F Q
Sbjct: 733 NNAAKFTEK-GSITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGIKPDDLDLLFKPFHQ 791

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               +    +G GLGL I + ++   GGQ    S+   G +   +LP
Sbjct: 792 IDSGLSRLHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLLP 838


>gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
 gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   + +  ++++  I    Q 
Sbjct: 355 ELKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAM--EDPQLRQQFLSIILTESQR 412

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           + +LI ++LDLS++E   ++LS  ++ L  ++ E   +L  RA EK I +     P  + 
Sbjct: 413 MESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAW 472

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D + + QV +NL+ NA+ +T  GG VHV++         + ++D G GI   EI  +
Sbjct: 473 IDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEE-TITVHVQDTGIGIDSDEISRI 531

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  H G+  ++S++ +G      L
Sbjct: 532 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKL 583


>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 758

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 12/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +         R++A+E N AKS FLA MSHE+RTPL  I+G +E+     +G   N
Sbjct: 363 VHIRKQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAEL----AIGNPGN 418

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I +SGQ+LL++IN+ILD S++EAG+ EL ++  +   ++   I   +   +
Sbjct: 419 PGVQEYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIR 478

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTS 397
           EK + +   +   L   V  DE  +RQ+  NL+ NAVKFT   G++ + +        ++
Sbjct: 479 EKGVTLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEK-GKIELRLTGLTSEENSA 537

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  I D+G GI   +  ++   F Q +       QG GLGL I + ++   GG   
Sbjct: 538 RMMLHFEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIG 597

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +RS    G      +P  R L   P  + +
Sbjct: 598 VRSTEGVGTTFFFNIPVERALPEEPAQDPD 627


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/458 (22%), Positives = 180/458 (39%), Gaps = 26/458 (5%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           +  T  H  +   +  DF+R  +   ++                     ++ +  +    
Sbjct: 86  VKQTNLHPRIPENAPDDFERAALEYFIKDPQNNE---------------FWQRVTLSDGT 130

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
                 +         +         +   +    L      G    +L + E       
Sbjct: 131 PAFRYVMALRAEESCLRCHGQPKGELDPTGYPKEGLELGDVAGAISVVLPMRETLASART 190

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                 +  + IAL    L   +L   V  +     +A     I + + +          
Sbjct: 191 ESLRLAALVVFIALLCFGLIWLILYRQV--ATPLAELADVATHIGTGNFVIEPERLQSLK 248

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A      +     + + ++    A  +  +AE        +E  +  E  +  KS FL  
Sbjct: 249 ANQETAVVAQAFEQMSDRLQELYAGLEQKVAE---RTRELEEANRELERASRYKSEFLTM 305

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPL +I+ F+E++      P      +E + ++  S Q LL +I  +LD SR+E
Sbjct: 306 ISHELRTPLTSIIAFTELLLN---DPRLAPEQRESLSEVLESSQKLLGMITNLLDYSRLE 362

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG+ +L    + L D++R+ +  +Q  A +K I +     P +  V AD   + QV+LNL
Sbjct: 363 AGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDCAPEVPLVHADPLRISQVLLNL 422

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNAVKFT  GGRV V       R   ++++D GPG+ E E   +   F QG    K   
Sbjct: 423 LSNAVKFTPEGGRVAVEC-RADQREVRVTVRDTGPGVPEEEQELIFQPFRQGR--EKGRP 479

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +G GLGL ++ S++  H G+  + S+   G      LP
Sbjct: 480 EGWGLGLALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517


>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 993

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I  +E  K    + R  AE  N AKS FLA+MSHE+RTPLNA+LGF++V+    +   
Sbjct: 288 EDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNG 347

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +     +++  IHRSG HLL LIN+ILDLS+IE+G  +      SL DIV +    L+++
Sbjct: 348 DEAV--DHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVK 405

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A E+N+ +      ++   + +D   +RQVI NL+ NA+KFT  G   +  ++  T    
Sbjct: 406 ADEQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNA 465

Query: 401 -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    + I D G G+   +   +  SF Q   +      G GLGL I++ +    G
Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMG 525

Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493
           G   + S++  G      LP    +      PE+     Q K 
Sbjct: 526 GSLTVHSEVGIGSTFRVELPTSIASLQDMVSPEELARLAQEKS 568


>gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 797

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 142/267 (53%), Gaps = 14/267 (5%)

Query: 216 SCQAEKDDLIAELEVAK---SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +  K+ L       +      +  ++RAE+   +KS FLA+MSHE+RTP+ AILG+++
Sbjct: 358 DLRISKEQLEKNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEIRTPMTAILGYTD 417

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+  E     +N  +++ +  I R+G+HLL +IN+ILD+S+IEAG+ E+     S   ++
Sbjct: 418 VLLHEVA---DNPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEVEIIPTSPTQLI 474

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +   ++ +RAQEK++E+  +    L   +  D   +RQ++LNL+SNA+KFT  GG V +
Sbjct: 475 ADVYTLMAVRAQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAIKFTDKGG-VRI 533

Query: 392 TVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                            I ++D+G G+++ +   +   F Q   ++     G GLGL I+
Sbjct: 534 RAAIEQGLPGQTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRRFGGTGLGLTIS 593

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q +    GG+  + S   +G      +
Sbjct: 594 QRLAQKLGGKISVESMPGKGSTFCVSI 620


>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1053

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 18/337 (5%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLF 208
           ++ +  +         +   + + L+   +  +  +L   L+  +A  +     +   + 
Sbjct: 282 AVLSTMDKRAVQVKTEALQFLTITLTIWLVSIILAILGFLLSNEIAKNIQNLENVLKRVA 341

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELR 261
           +   +               E A SL +       + ++ A+E + AKS FLA+MSHE+R
Sbjct: 342 EDTNESDKAIDINLHTAKGTEEAYSLLEKIIEQTKQDKEAAQEASEAKSMFLANMSHEIR 401

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+GF+E+++   +     E  +E++  I +S ++LL +IN ILDLS+IE+ + E+
Sbjct: 402 TPLNGIVGFTELLKDTGL----KEEQQEFVEIIEKSSENLLEIINNILDLSKIESNKLEI 457

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
            +   + I+     + +  +RA EK+I++   IDP L   +  D   +++V++NLLSNAV
Sbjct: 458 EDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDPELEQPLKGDPTKIKEVVINLLSNAV 517

Query: 381 KFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           KFT+  G ++V +                ++D+G G+   +   +  +F Q   +I    
Sbjct: 518 KFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKY 577

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I+   +   GGQ  + S+  EG      L
Sbjct: 578 GGTGLGLTISARFIELMGGQLDLHSEPGEGTTFFFTL 614


>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 985

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I   +  +    E +  AE  + AKS FLA+MSHE+RTP+N I+G ++++    +  
Sbjct: 581 ERDITRSKQRERELAEAKLAAEHADRAKSEFLANMSHEIRTPMNGIIGMADLLAEAELTA 640

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            +    ++ +  I  S Q LL +IN+ILDLSR+EAG++ +S    +L D +     + + 
Sbjct: 641 DD----QQNVETIRSSAQALLKIINDILDLSRLEAGKFAISREDFNLRDCIGGAADLFRP 696

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +A EK + +       L   +  D+  +RQ+++NL+ NAVKFT   G++ V V       
Sbjct: 697 KALEKGLSMQVSYANGLPDRLHGDDGRLRQILVNLIGNAVKFTPD-GKIAVRVSQAGEDP 755

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D+G GI+E +   +   F Q   A   A  G GLGL I+  +    GG   +
Sbjct: 756 CRLVVEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTGLGLTISSMLAKRMGGGITV 815

Query: 459 RSKLREGVEVIAIL---PNTRVLNFIPEDNHEST 489
           +S+  +G      L   P ++ ++       E+ 
Sbjct: 816 QSQPGKGSCFRLELQMVPASQAVDATAPALPEAP 849


>gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134]
 gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134]
          Length = 670

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 100/263 (38%), Positives = 142/263 (53%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+      + +AEE N  KS FLA+MSHE+RTPLN ILG  ++IE+E+    +N
Sbjct: 417 ITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIEIES----DN 472

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET   Y   I +SGQ LLN IN ILDLSRIEA R E+S   +++I++V   +  L++ A 
Sbjct: 473 ETMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLAN 532

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            +NI +  + + +   V  D   + QV+ NLL NA+KFT  GG V + +         I 
Sbjct: 533 SRNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRLN-DENNCLTIE 590

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  +  +   F Q S  ++   QG GLGL IA+ I+   GG   + SK   
Sbjct: 591 VIDTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIKVHSKKNL 650

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G     I P  ++    PE   +
Sbjct: 651 GSCFTVIFPEQKLN---PEAESQ 670


>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 802

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            EL  AK  S+  ++ AE     KS FLA+MSHE+RTP++ I+G SE++    + P    
Sbjct: 128 QELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSETALDP---- 183

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +EY   I      LL+LIN+ILD S+IEAG+  L      L D   + + M+ L A +
Sbjct: 184 EQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHK 243

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           K +E    I+  +  +   D   +RQ+I+NL +NAVKFT  G   + +++   S      
Sbjct: 244 KGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRISLDDRSDGKVRL 303

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GIAE ++  +   F Q   +      G GLGL I++++    GG+  + S+
Sbjct: 304 RFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIGVESR 363

Query: 462 LREGVEVIAI 471
              G      
Sbjct: 364 ESVGSNFWFT 373


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1235

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 12/249 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + R+ A E +  KS+FLA+MSHE+RTP+N +LG + ++    +        K+++  
Sbjct: 560 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQA 615

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S  HLL +IN+ILD S++EA   EL +    L + +   I +L  +A+ K IE+   
Sbjct: 616 IRTSANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAI 675

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIK 406
           +D ++   +  D   +RQV+LNL+SN +KFT   G V + V                 ++
Sbjct: 676 VDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLILRYEVQ 734

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI       +  +F Q   +      G GLGL I + ++   GG+  + S + +G 
Sbjct: 735 DTGIGIPPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGS 794

Query: 467 EVIAILPNT 475
                LP +
Sbjct: 795 NFWFTLPFS 803


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 16/285 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L    ++   +  +  +    + E  +               +  AE  N AKS FLA +
Sbjct: 568 LDLLKHLADQMGVALTQAHLLEQETRNAYLLTRQ-NEELTAAKHAAEVANAAKSNFLAIV 626

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NA++G S ++    + P       +Y+  I  S   LL +IN+ILD S+IE+
Sbjct: 627 SHEIRTPMNAVIGMSGLLLDTCLTP----EQFDYVETIRNSSDTLLTIINDILDFSKIES 682

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G+ EL E    L   + E + +L  +A  K +++   IDP L + +  D   +RQ++ NL
Sbjct: 683 GKLELEEQPFDLRICIEEALDLLAPQAASKGLDLVYFIDPHLPTQIIGDITRLRQILWNL 742

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           LSNAVKFTA+ G V ++V                   +++D G GIA  ++  +   F Q
Sbjct: 743 LSNAVKFTAM-GEVVISVQGRELEFYPPFISTYEIQFAVQDTGVGIAREQMERLFKPFSQ 801

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G  ++     G GLGL I++ +     G+  + S+  +G      
Sbjct: 802 GDASMTRRYGGTGLGLAISKRLSELMRGRMWVASQEGKGSTFYFT 846


>gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 973

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 6/302 (1%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +  A +S      S+   L      + ++     +               + +    +  
Sbjct: 514 AAAASLSRERPTASVVFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQERH 573

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +  R  AE    AK+ FLA+MSHELRTPL  +LG  +++         ++  +  +G  
Sbjct: 574 LERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLA---GDASLSDAQRHLVGLA 630

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G+ LL ++N+ILD S+IEAG+  +     SL  +V  C  ++   A++K + +   I
Sbjct: 631 QEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTDI 690

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412
           +         D   +RQ++LNL SNAVKFT   G + + VG+ +      +++ D G GI
Sbjct: 691 EGDAPDRFVGDPTRLRQILLNLASNAVKFTPR-GEITMRVGFAASTGRVRVAVTDTGIGI 749

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++P +   F Q   +      G GLGL I + ++   GG   + S    G      L
Sbjct: 750 PADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVESVPGRGSTFWFEL 809

Query: 473 PN 474
           P 
Sbjct: 810 PL 811


>gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 936

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        + 
Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EDV 742

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  ++++A+
Sbjct: 743 AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E ++E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 803 E-DVELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYELKEGELEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 859 YVKDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 915 KGSRFWFTIPGVIVTEEM 932


>gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 926

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        + 
Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EDV 732

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  ++++A+
Sbjct: 733 AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAK 792

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E ++E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 793 E-DVELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYELKEGELEF 848

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 849 YVKDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 905 KGSRFWFTIPGVIVTEEM 922


>gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
 gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
          Length = 421

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 135/251 (53%), Gaps = 3/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++A+    ++    +E +  KS F A +SHE+RTP+ +I G++E++  E+MG LNN
Sbjct: 174 ITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGKLNN 233

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  I  +   L  L++++LD+SRIE   + L+   + + D++   +  L   A 
Sbjct: 234 -NQKMCLNTILENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPIAL 292

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K+I++  +I     ++ AD+  + QV  N+  NA+KF+    +V +T          IS
Sbjct: 293 KKHIKLSLEIPN--ITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDILIS 350

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKDNG GI++ E   +   F Q   + +  + G GLGLPI++ I+  H G+  + S+L +
Sbjct: 351 IKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESELNQ 410

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 411 GSTFYISLPKK 421


>gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1057

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 13/311 (4%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSD 236
                 ++   LA        F  ++      +       +    DL    E  K+   +
Sbjct: 481 FFKQPWIVKFVLACGFLFTGLFGWFLLIVSSHTAEVENRVRLRTRDLQLANEHLKASELE 540

Query: 237 E--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           +   ++ A+E N AKS FLA+MSHE+RTPLN ++G   ++    + P             
Sbjct: 541 QSKAKEEAQEANRAKSEFLANMSHEIRTPLNGVIGCLSLLMNTKLQP----DQSNLAKIS 596

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +S + LL++IN+ILDLS+IE G   L +    L  ++ E   +  L+A+EK I +    
Sbjct: 597 QQSAESLLDIINDILDLSKIEMGTLVLDKQEFELRALIEEVTNIFVLKAEEKGIVLNSPT 656

Query: 355 DPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQ--YISIKDNG 409
            P    +++ D   ++QV++NL+ NAVKFT   G V +   +   +       I I+D+G
Sbjct: 657 TPIPNVTLFGDRLRIKQVLVNLMGNAVKFTQE-GEVALRFAIEPLADDSVILRIVIEDSG 715

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++     +   F Q   +      G GLGL I++ I+    G+  + S   +G    
Sbjct: 716 IGISKENQSHLFQRFKQADGSTTRKFGGSGLGLAISKEIIQAMDGEIGLNSVEGQGSSFW 775

Query: 470 AILPNTRVLNF 480
             +P + V   
Sbjct: 776 FRIPLSVVSTA 786


>gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 1328

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +S   + +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +    +
Sbjct: 583 LTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + ++Y+  I+ S ++LL +IN+ILD S+IEAG+  +     SL ++      ++  +AQ
Sbjct: 639 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + V+V          
Sbjct: 699 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 757

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KD G GI + +I  +  +F Q   +I     G GLGL I++ ++   GGQ  + 
Sbjct: 758 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 817

Query: 460 SKLREGVEVIAIL 472
           S +  G      +
Sbjct: 818 SAVGMGSTFTFTI 830


>gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126]
          Length = 983

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 31/453 (6%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPI--------FPMWSLITLAVYAANL-----SLGKK 92
            R   ++     + A I   F              P W +    +    +        K 
Sbjct: 147 VREKSLIAYVGYIAAVILWQFVWGGHTHLLFSQGIPSWLVGHSELIFVIIGISSGFFTKT 206

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            + ++      +     LLV Q   GL C+  L            + +    + + A   
Sbjct: 207 FLETEKHSPTAHPVINLLLVCQALTGLVCFVDLLPSIWKNNLVYGVGLVAILSYIYAGFE 266

Query: 152 SALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203
           +  + F    Y +F        A+     +   +           +   L   L  F  +
Sbjct: 267 AFFNKFKPARYFIFAWSMLATGAIIGMLSLIGILPSNDFTTYCFQVGVFLEAGLFSFALM 326

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +   ++     +  + +  +E   +  D  RK A + +  KS+FLA+MSHE+RTP
Sbjct: 327 EKSRGQLESEVEQATNDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 386

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS     E          +E +  ++ +  +LL ++N+ILD S+IEAG+ +++ 
Sbjct: 387 LNAILGFS----KELNNASLPTDQQEQVRIVNTAADNLLTIVNDILDFSKIEAGKLQINN 442

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              S   ++ E + ++   +  K IE    + P    +  D   ++QV+ NLLSNA+KFT
Sbjct: 443 QPFSPNKLLEEMVTIMAKSSHSKRIEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFT 502

Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +  G +  +V             I+++D G GI+  +   +  +F Q   A+    QG G
Sbjct: 503 SS-GTITFSVSGRSLPHGIHEVNITVEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTG 561

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ ++    G   ++S L +G      L
Sbjct: 562 LGLVISRELVRLMNGDLTLKSVLGQGSTFNVSL 594


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L     L+   V + +S    ++ ++  +        +            K  +      
Sbjct: 287 LTLVGVLTILVVGIGISLAHRVTRNLSLVLSYLENEKSTGDIPLTARIGGKDELS--RFA 344

Query: 219 AEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGFS 271
            E + L  E + ++    E +  AE       E + AKS FLA+MSHE+RTPLN ++G S
Sbjct: 345 REVERLTNEQQESQRNLLEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGIS 404

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+    +      T K+Y+  I  S Q LL+LIN+ILD S+IE+G  +++  + S+ + 
Sbjct: 405 EVLSDTDLTA----TQKDYVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRET 460

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + +   ++  + +EK IE+   ID ++   V AD+  MRQV++N +SNAVKFT   G V 
Sbjct: 461 IYDIASIVAPKVKEKGIELNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDK-GSVT 519

Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + V +             ++D+G GI +     +  +F Q   +      G GLGL I+ 
Sbjct: 520 IGVHYQGESNNMASLMFEVQDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAIST 579

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            ++   GG+  + S    G      L
Sbjct: 580 QLIELMGGEIQLDSVKGVGSRFYFTL 605


>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
 gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
          Length = 1316

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 12/299 (4%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               + +H     +                 + ++        A    L   +  A  ++ 
Sbjct: 720  GHWVWVHDRGQVMTWTADGKPLMMFGTHMDINQAKQVEQELMATNFQLEDAMARANQMAT 779

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E    AE  NLAK  FLA+MSHE+RTP+N I+G + ++    +     +  + Y   +  
Sbjct: 780  E----AELANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL----TDEQRRYARIVQA 831

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            SG+ LL +INEILD S+IEAG+ +L     +L D        L ++A E+ IE    +DP
Sbjct: 832  SGESLLRIINEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDP 891

Query: 357  SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGI 412
             +   +  D   + Q++ NL  NAVKFT+ G   + V V   + +    Y S+KD G GI
Sbjct: 892  DVPLGLRGDSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSVKDTGIGI 951

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
               ++  +   F Q   +      G GLGL I++ +    GG+  + S   EG      
Sbjct: 952  QREKLGMIFNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEGSNFWFT 1010


>gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1120

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 6/252 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    + ++ AE    AKS FLA+MSHE+RTP+NAI+GFS+V+    +     
Sbjct: 517 ITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTTDL----V 572

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  I+ S   LL+L+N+ILD +++E G+ +L     SL +++      L ++ +
Sbjct: 573 AAQRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQTR 632

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K ++I   + P L+  +      +RQV++N++ NAVKFT   G+VH+++  T       
Sbjct: 633 KKRLDIELSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEK-GQVHLSIKPTQDGKVLF 691

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G GIA   I  +   F Q   ++     G GLG  I++ ++   GG+    S+L 
Sbjct: 692 SVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASSELG 751

Query: 464 EGVEVIAILPNT 475
           +G     ILP  
Sbjct: 752 KGSCFEFILPLK 763


>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1172

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 138/260 (53%), Gaps = 14/260 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL  A+  ++  +++AE  N AKS FLA MSHE+RTP+N ILGF+E++  + +     
Sbjct: 407 VTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQALSS--- 463

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE +  I   G+ LL+LINEILDLS+IE+G+  L E+  SL +I+++ I  ++ +AQ
Sbjct: 464 -EQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKAQ 522

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K +EI       +      D   +RQ++ NLL NAVKFT  G  + ++V          
Sbjct: 523 DKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGSVI-ISVSKRQEECHER 581

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G GI++ +   +  +F Q    I     G GLGL I +S++   GG+
Sbjct: 582 DDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLDLMGGE 641

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + S   +G      LP  
Sbjct: 642 IWVNSNKPQGTIFTFCLPVK 661


>gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 792

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 179/362 (49%), Gaps = 13/362 (3%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISL-AGMLA 194
           L       ++  L+++ L ++ L   +      +   A+        +          + 
Sbjct: 166 LLSLFLVLIVGMLALTLLVSYWLKSHITQPLASLSEWAMQVSKHKDFNARASKRNEDEIG 225

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             +     +   L +    I+S   E +  I E +V +     TR RAEE N AKSRFLA
Sbjct: 226 HLVDSLNVMLSELARQE-TIVSLNRELEWEIQERKVVEKDLIATRNRAEEANKAKSRFLA 284

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI---HRSGQHLLNLINEILDL 311
           +MSHELRTPLNAI+G+SE+++   +   ++   +E + DI     +G+HLL+LIN+ILD+
Sbjct: 285 NMSHELRTPLNAIIGYSEMLQE--VVAEDDYEREEILDDIGKVRSAGKHLLSLINDILDI 342

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IEAG+ ++S  A S+ D+V E    L+L A E+  ++  +    +  V +D   +RQ+
Sbjct: 343 SKIEAGKMQISIEAFSMEDLVDEVAGALRLLADERRNKLVVRGAGDVGVVHSDLVKVRQI 402

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           + NLLSNAVKFT   G V +     S          ++D G GI++  I  +   F Q  
Sbjct: 403 LFNLLSNAVKFT-EDGVVELICERESVAGEDWMLCKVRDTGIGISDRAIKELFRPFSQAD 461

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            +      G GLGL I++S     GG+  + SK  EG E    LP T  +N  PE+  E 
Sbjct: 462 PSTTRRYGGTGLGLAISRSYATMLGGEITVSSKEGEGSEFCIRLPTTAEING-PEERIEG 520

Query: 489 TQ 490
            +
Sbjct: 521 VE 522


>gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
          Length = 918

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 162/373 (43%), Gaps = 29/373 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +     L+  P
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI----NLDLNP 522

Query: 483 EDNHESTQYKCYA 495
               E    +C+A
Sbjct: 523 NIIIEGPSTQCFA 535


>gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 775

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 9/291 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRA 242
              + T ++        L  S  ++++   +      +LE  K+   +        ++RA
Sbjct: 477 LVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDANANYLAEKERA 536

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  NLAKS FLA+MSHELRTPLNAILGFS++++ E  GP+ +  Y EY  DIH SG+HLL
Sbjct: 537 QAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSEYARDIHDSGKHLL 596

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           N+IN+ILD+S+IEAG   ++   I L  ++ E + +  ++A++KNI + QK+   L ++ 
Sbjct: 597 NVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQQKVCAGL-TMQ 655

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D + M+Q++LNLLSNAVKFT  GGRV +           ++I D G GI    +  +  
Sbjct: 656 GDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMI-LTIADTGIGIPAEALDKIGQ 714

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q       ++ G GLGL I++S++  HGG   IRS    G  V  I+P
Sbjct: 715 PFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVTIIIP 765


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + + A++      + A   + AKS FLA+MSHE+RTP+N ++G   ++    +    N
Sbjct: 415 VTKEKNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL----N 470

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  I  S   LL++IN+ILD S+IEAG+  L    + L  ++   + +L L+A 
Sbjct: 471 GEQKSMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQAN 530

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI----GGRVHVTVGWTSGR 399
            K IE++   D SL  V  +D   + QV+LNL+ NAVKFT       G+V V+       
Sbjct: 531 NKGIELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQHD 590

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I I+DNG G+ E +I  +  +F Q   +      G GLGL I +S++   GG  
Sbjct: 591 IAPYVEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGDI 650

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+   G      LP   V    P+D   +
Sbjct: 651 HVDSRFGVGSRFSVELPFIEV-EEPPQDPTPN 681


>gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 923

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 11/276 (3%)

Query: 208 FKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +++N++ +  +   D    I E E  +      +  AEE N  K+ FLA ++HE+RTPLN
Sbjct: 357 YRTNLETIIFERTNDLQQKILENEQYQKELKLAKDLAEEANKTKTDFLAKVTHEIRTPLN 416

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I G ++ +   ++    N+  +E +  I  S  HLL ++N++LDLS+IEAG+       
Sbjct: 417 SIKGMNDYLLSTSL----NDDQRECLSIIKESSNHLLTIVNDLLDLSKIEAGQLVFEHID 472

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L  ++   I +LQ  A +K +++    +      V  D   +RQV+ NL +NA+KFT 
Sbjct: 473 FALKQLIESTIRILQPLANQKKLDLHVAYEGDADIVVRGDPSRIRQVLFNLANNALKFTQ 532

Query: 385 IGGR-VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G   +  +V W      Y   ISIKD G GIA   +  +   F Q   +      G GL
Sbjct: 533 TGTVGIVASVAWQESLDAYAITISIKDTGIGIAAEALQRIFQPFVQSDNSTSRKFGGTGL 592

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GL I   ++A  GG   + S+  +G      L   R
Sbjct: 593 GLSICNQLIALMGGTIAVSSRPGQGSTFTFTLQLQR 628


>gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
 gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
          Length = 639

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 21/350 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
            +           +     LLIAL +S L N  +         P+         +S    
Sbjct: 307 FLALQADVRNQTFVVGLIGLLIALIVSYLINRGI-------IKPLEQLKQGAEWVSNGRY 359

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           D     ++  +   F  +     K            D L    E  K   +E +    E 
Sbjct: 360 DQK---VIVDSDDEFGELAKAFNKM---ATQINISDDKLKKHAEELKISYNELK----EL 409

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS  +A +SHELRTPL +I G+ E++   TMG + N++ K+ +     +   L  LI
Sbjct: 410 DKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQKKCLQVADDNIVRLRRLI 468

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS+IE G  E+    ++L  IV + I  L+  A EKNI++ ++++    ++ AD+
Sbjct: 469 ESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVED--IAIEADK 526

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+ NL+ NA+KF+     + V+ G       ++ + D G GI + ++  +   F 
Sbjct: 527 DRITQVLTNLIENAIKFSPANESILVS-GVLEDEHIHLKVTDRGAGIPKKDMEKIFNRFY 585

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           Q   + K  + G GLGL + +SI+  H G   + S+L +G     ILP +
Sbjct: 586 QVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPIS 635


>gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 17/346 (4%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            L I  +  +LI   I    +  L   +                +S +V  I   G +  
Sbjct: 192 RLLITAAIFILIGACIVLFVSERLSRPLMHLTRLANELAQGNFAVSDNVKKIHPDGEIGA 251

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             + F+ +  +L  S  K+         L  ++    S   E R +A   + +KS FL+ 
Sbjct: 252 LTTAFSQMARNLKISYDKLEEY---SRTLEQKVINRTSELAEARDQAIAADKSKSEFLSM 308

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NAI+G + +     +        ++Y+  +  S + LL +IN+ILD S+IE
Sbjct: 309 MSHEIRTPMNAIIGMTRLALQTDLTA----KQQDYLTKVQISSRALLGIINDILDFSKIE 364

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           AG+ EL   A +L D++ +   ++  +A+EK ++I       + S +  D   + QV+LN
Sbjct: 365 AGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFITADDVPSDLIGDPLRLGQVLLN 424

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQY---------ISIKDNGPGIAEGEIPTVLTSFG 425
           L++NAVKFT+ GG V + V    G  Q           S+KD G G+   +I  +  SF 
Sbjct: 425 LVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEFSVKDTGIGLTTEQIGGLFQSFN 484

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q   +      G GLGL I + ++   GG   + S++ +G   I  
Sbjct: 485 QADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQGSTFIFT 530


>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
 gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
          Length = 931

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 27/357 (7%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD     +  
Sbjct: 177 HRAAVAAFIMVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTR---VDG 230

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAE 243
             +     +   +      +     E    I            ++E+     D  +KRA 
Sbjct: 231 HLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRAL 290

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS FLA+MSHELRTPLN ++GF++ +    +      + ++Y+  I +S  +LL 
Sbjct: 291 EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYVNTIEKSATNLLG 346

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN+ILD S++EAG+  L     +L + + + I +L   A+EK+IE+   ID S+   + 
Sbjct: 347 IINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQSIPEDLS 406

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIP 418
            D     Q+I NL+ NA+KFT I G VH+ +  T      +     + D G GI E +  
Sbjct: 407 GDAMRFSQIITNLVGNAIKFTDI-GSVHLRLQLTESTNDKVNLRCEVIDTGIGIDESQQE 465

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +FGQ   +I     G GLGL I + ++   GGQ    SK   G      LP +
Sbjct: 466 LLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSFWFTLPLS 522


>gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1200

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/269 (34%), Positives = 145/269 (53%), Gaps = 21/269 (7%)

Query: 238 TRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +K+AEEE           N  KS+F+A++SHE+RTP+NAILGF E++        N+  
Sbjct: 693 AKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLN----IHNDPR 748

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              YI  I  SG+ LL LIN+ILDLS+IEAG+ EL+   I+L +++ +   +   +AQ K
Sbjct: 749 TLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFSTQAQTK 808

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYI- 403
            +++  + +P++  V   DE  +RQ++ N++ NA+KFT  G  +V V     +    YI 
Sbjct: 809 KLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLATNNNYIQ 868

Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S++D G GIA G+   +   F Q          G GLGL I + +    GGQ +++S
Sbjct: 869 LKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGGQIILQS 928

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489
           +L +G     I P  + +    +   ES+
Sbjct: 929 ELGKGSIFTLIFPKIQSVTSGKKPPRESS 957


>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1106

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/471 (20%), Positives = 168/471 (35%), Gaps = 11/471 (2%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83
                      R+ +  +V  L           + V  +G  + Q     +W L      
Sbjct: 298 TRPGRVSSALVRQGLLDYVVVLEYQFDAWGWRTVGVIALGQVWHQFRQNALWMLGLTGSL 357

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
           +  +     +++  I         + L            +  +            +  +A
Sbjct: 358 SMLILAWIWLIDRRIM-RPAQRQSLRLQESDALGRFVIEVAGVGLMIVERSTRQVLLANA 416

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
                   +  +          +        +          D+ L G            
Sbjct: 417 AAHSITDQATPAGLAQLQDACDARLTSEGTTTEGMPRVQPCFDVDLVGRNGQTRYLEVRQ 476

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               ++    +L    +    + +   +++   E  + A+  N AKS FLA+MSHE+RTP
Sbjct: 477 VEITYEGRAAVLRALND----VTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTP 532

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG  E++ L  +        ++ +  +  + Q L+ +IN++LD S+IEAG+  L  
Sbjct: 533 LNGMLGSIELLGLTRLDS----RQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQL 588

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               + +IV +        A  K + +    DPSL   V AD   + Q++ NL+SNAVKF
Sbjct: 589 RPCRVEEIVEDVTRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKF 648

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G+V VT     G G  I + D G GIA  +   +   F Q          G GLGL
Sbjct: 649 TEQ-GKVIVTAMRKPGGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGL 707

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            I + ++    G+  + S+   G      LP        P D    T  + 
Sbjct: 708 SICRRLVGLMSGEIRLVSEPGLGSCFTVSLPLASAGAEAPADAWPRTALRG 758


>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 568

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 12/311 (3%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
             F+    +++ ++   +++ + +             +FT       +     LS   E 
Sbjct: 263 LFFMCTALLLLGVAVTFVLNRYFVSRVKRVQEQLRGEYFTGPEQRTVR-----LSGNDEL 317

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL   +     L  E + +AE  +  K+ FLA+MSHE+RTP+++ILG  E+++   +  
Sbjct: 318 SDLSESINDILVLLQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKETNV-- 375

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  +E++     +G+ LL +IN++L++S+IEAG  ++      L ++V   + +  L
Sbjct: 376 --DEEQREFLNIAGTAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFAL 433

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            A  K +++   ID ++   V  D   +RQV+ NL+SNAVKFT+  G + V++ W + + 
Sbjct: 434 DAARKGLKLVCHIDENVPDKVVGDATRIRQVLNNLISNAVKFTSE-GTIVVSIYWEAEK- 491

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++KD G GIA  +I  +  SF Q   +      G GLGLPI++ +++  GG+  + S
Sbjct: 492 LIFAVKDEGIGIAADKINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCS 551

Query: 461 KLREGVEVIAI 471
            + EG      
Sbjct: 552 SVGEGTTFRFY 562


>gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
 gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
          Length = 885

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 14/342 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L++ +S+  L   +      L   P+ +       +    L ++L       +
Sbjct: 290 AISVITGLIVIISVITLPILIFIVVRNLLLNPIELLGEASHRVGDGDLSVTLPAYTTDEV 349

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAK 249
                   H+            E    + +         E   S  +    +AE+ N  K
Sbjct: 350 GILFNDFNHMINQIKHYQQQLEEYKHHLEDKVESRTKALESMNSKLETAIAQAEQANQLK 409

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           SRFLA+MSHE+RTPL AI+GF+E +        +    K ++G I R+ +HLL LIN IL
Sbjct: 410 SRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTND----KHHLGTILRNSKHLLELINNIL 465

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IEA +  + ++ ++++ ++ +   +++  AQEK +         L   + +D   +
Sbjct: 466 DLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTINYALPLPHTINSDITRL 525

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+++N+ SNAVKFT   G+V +T  + + +     I+D G G++  +I  + T F Q  
Sbjct: 526 KQILINIASNAVKFTEQ-GQVTITAKYQAPKTLTFVIEDTGIGMSSNQIKRLFTPFEQAD 584

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
                   G GLGL I++++    GG   + S++  G     
Sbjct: 585 ATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTI 626


>gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 728

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 166/332 (50%), Gaps = 22/332 (6%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           + +  +  +   ++         +T       + +L           E   A+    ++ 
Sbjct: 256 LGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAQAQENLRQSN 315

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E  +  KS FLASMSHELRTPLN++LGF+++++ +  G LN+    + +  I +SG 
Sbjct: 316 EKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQ-VQFIEKSGL 374

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+ILDLS+IE+G+ EL+   +++ ++  EC+ M+Q RA +K + +  + D  ++
Sbjct: 375 HLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKMVQPRADKKCLALSLESDYRIT 434

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----------------VGWTSGR--GQ 401
               D++ +RQ+I+NLLSNA+KFT  GG+V ++                    +      
Sbjct: 435 QALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYGSQIDGDYRPDCSPINDSTPYL 494

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D+G GI +     +   F Q   ++    +G GLGL + + +   HGG   ++S+
Sbjct: 495 CLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 554

Query: 462 LREGVEVIAILPN---TRVLNFIPEDNHESTQ 490
           + +G      LP     R L       HES +
Sbjct: 555 VNQGSRFRVWLPLTEMRRELAKSYHPEHESQE 586


>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
 gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
          Length = 1053

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 11/357 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIM 180
            L  L+  G   P  L   ++A       ++                P +V A    +  
Sbjct: 268 ALRALLPAGAKPPLLLNAIRAAGGHFVAELNFRRADAASEHDLEGTVPYLVHASLIHSQA 327

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                 I ++  ++   +    +  +  + +      +  +D+L A +E       + ++
Sbjct: 328 GKLEGAIVISTNISVLKAREKALRNNERQLHETAEELRNHRDNLAAMVEEQTRDLRQAKE 387

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AEE + AKS FL++MSHE+RTPLNAILG S++     +    N    +++  I  +  H
Sbjct: 388 QAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQTPL----NPQQNQHLSKIRLAADH 443

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD SRIEAG+  + +    L  ++ E   +L  R +EKN+E+   I    S 
Sbjct: 444 LLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCVDIAAEASR 503

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
               D   ++QVI+NLL NA+KF+   G V +     S        + S+ D G GI+E 
Sbjct: 504 SFVGDPLRLKQVIINLLGNAIKFSDQ-GSVRLGCRIDSTDHNSTSLHFSVSDEGIGISEE 562

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   + ++F Q   +      G GLGL I++ ++   GG+  + S    G      +
Sbjct: 563 QQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLESTPGNGSTFHFTI 619


>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297]
 gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
          Length = 767

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 204/465 (43%), Gaps = 34/465 (7%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90
           + L             LF+   A +           +W             + A +L  G
Sbjct: 196 LFLFATVRDVSYLYYVLFITTFACLHLSLDGYIFQHVWPESMAYSPIPDTLLSAGSLIFG 255

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
              +   + +         ++   I I L    L L  PG     +        LL+A+ 
Sbjct: 256 LLFITYFLNLKSELPLLNRIIQVMIGIMLAVIALALYYPGLPIDSWTVPLMGTLLLMAVL 315

Query: 151 ISALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           I   + F  L  A + +   VV A+    ++      + L G     +          F 
Sbjct: 316 IGVYAAFKGLVTARYFTLAWVVFAVGNLYLV------LVLTGTNLLPVPPLMVSKAAAFA 369

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             + +    A +  ++ E    + L      +AE    A+S FLA +SHE+RTPLN +LG
Sbjct: 370 EAMLLSFALAHRIRVLREERQKQQL------KAE----AQSYFLAQISHEIRTPLNGVLG 419

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++   +    +E  K+YI  I  SG+ LLNL+N++LD SRIEAG+  + E  I + 
Sbjct: 420 TVDLLDQTQL----DEEQKKYIETIQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQ 475

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           D+ R  + + + +A +K++     IDP++   + +D + +RQ+  NL+SNA+KFT   G+
Sbjct: 476 DLFRHQVELFRAQANQKSLNFKLTIDPNVPEWILSDAQRIRQIATNLISNAIKFTDQ-GQ 534

Query: 389 VHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           V V++  T   G     I ++D G GIA  EI  +  ++ Q  +  +    G GLGL I+
Sbjct: 535 VVVSLSSTRRNGHPYLSIQVRDTGIGIASHEIAHLFDAYQQVDVGKRRVYGGTGLGLAIS 594

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489
           Q ++   GG   ++S+  +G E    LP   R L+  P  N E+ 
Sbjct: 595 QQLVDLLGGTITVQSQQNQGSEFTVQLPLKTRTLSAPPTANVETA 639


>gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 660

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 150/273 (54%), Gaps = 15/273 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A++   ++++ AE  N AK+ FL +MSHELRTPL AILG++++++       
Sbjct: 378 RDITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQ---DKR 434

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  +E I  I+RSG+HLL LI++ILDLS+IEAG+ EL  S   L  + ++ + +  +R
Sbjct: 435 LTDEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIR 494

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
            ++K IE+  +    L     AD K +RQ++LNL+SNA+KFT   G+V + V +T     
Sbjct: 495 FEQKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTET-GQVSLKVQYTPIPDN 553

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + ++D+G GIA   +  +   F Q    +    +G GLGL I ++++   GGQ
Sbjct: 554 KNQGKMRVDVEDSGIGIAAAHLEKIFLPFQQVGNKM-YYSEGTGLGLSITKTLVEMMGGQ 612

Query: 456 FLIRSKLREGVEVIAILPN---TRVLNFIPEDN 485
             ++S+L  G      +P       LN  P   
Sbjct: 613 LQVKSRLGRGSHFWFEIPIQIHAFALNEPPPPE 645


>gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
          Length = 918

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
 gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
          Length = 918

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
 gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
          Length = 918

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|83944788|ref|ZP_00957154.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851570|gb|EAP89425.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 577

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 186/442 (42%), Gaps = 26/442 (5%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
                R  P+     L  A +  +         ++++ +A    +  +  K  +      
Sbjct: 14  ARKRARELPMRIGTALFGAFVLFFAGLKLFALGYAVLAVASQCLDHWIASKFRDESRTAP 73

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW--TPEYLTIYKSATLLIALSISALSNFML 159
                +I   +  +   + ++ L+L     W  T E + +      L  +++ +  N  L
Sbjct: 74  VTRPEKISANLSMLLASIIYSSLSLGLWTAWGQTGESIALLLLCGSLFHIAVHSNENLSL 133

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             +        ++ L   A+     +++     L  A  F  +      +        + 
Sbjct: 134 TLSGGGPAAAYLLGLPASALFRDGEMNVEYLLALIAATLFLLHFFIAARRFGDASHRIKD 193

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                               ++AE+ N AKSRFLA+MSHE+RTPLN ++G ++++E   +
Sbjct: 194 ------------------AYRQAEKANAAKSRFLANMSHEIRTPLNGVMGMAQLLEQTEL 235

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               ++  ++Y+  ++ SG  L  LI+++LD+SRIEAG  EL ++     D++R     +
Sbjct: 236 ----DDRQRDYVRMLNSSGTALRGLIDDVLDISRIEAGELELDDTPYRPADLLRNTADTI 291

Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             +A  K + +   I P L + V  D   + Q++ N   NAVKFT + G + ++      
Sbjct: 292 ASQAASKKLTVELDIAPELEALVAGDATRVLQILTNFAGNAVKFTDV-GAIAISGRVLET 350

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D GPGIA  ++ ++   F Q   ++    +G GLGL IAQ I    GG   +
Sbjct: 351 GQMELSVSDTGPGIAPDQVKSIFERFSQLDDSVGRQHEGAGLGLTIAQEIAVLAGGDIGV 410

Query: 459 RSKLREGVEVIAILPNTRVLNF 480
            S+L  G      LP+  V   
Sbjct: 411 ESELNAGSRFWVRLPHRPVKPA 432


>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
           35469]
 gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia fergusonii ATCC 35469]
 gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
          Length = 918

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLTIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|16125173|ref|NP_419737.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233906|ref|YP_002516342.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13422191|gb|AAK22905.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220963078|gb|ACL94434.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 586

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 175/449 (38%), Gaps = 27/449 (6%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           +K   D  +  +  ++ +R++    +   LVA I  +     I   W L         L 
Sbjct: 5   AKAWSDERLDEVAADT-YRLTLSRLISAALVAVIMVFALGPAIATGWLLSLYIGEGLALL 63

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           + ++  +          W        I I + WT L ++              +      
Sbjct: 64  VTRRFKDGRTGTPRERAW---FAWASIPINISWTTLAILLWLHGEDLMKIAAVAIWCGQV 120

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +      +      +     P+   L             +        L           
Sbjct: 121 IYTQNFRHQSAALLLLNGLTPMASLLIFPFFFMPDASAAAQTARWGLVLLVG-------- 172

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                 L+   +       ++       E R++A E   AKS F+A  SHELRTP+N +L
Sbjct: 173 ----TTLNVMIQNRAAARRMDELTRGLREEREKALEAARAKSTFIAVTSHELRTPMNGLL 228

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +  ++  T+ P+     +E I  + +SG  L+ L+N++LDLSR+E G+ EL+   +SL
Sbjct: 229 GMAHALQRSTLDPV----QREQIALMIKSGDSLMQLLNDVLDLSRVETGKVELAPIDMSL 284

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+V E +   +  A  KN+ +     P L   V AD   +RQV+ NL+SNA+KFT  GG
Sbjct: 285 QDLVGEVVDAWRDAAVFKNLSLSVDYAPDLPPGVHADPLRIRQVVTNLVSNAIKFTVDGG 344

Query: 388 RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + V         +   I++ D GPG+    +  V  SF Q    I     G GLGL 
Sbjct: 345 -VRLEVAARPANGGDQRVSITVADTGPGVPADAMERVFDSFTQADQTISREHGGAGLGLS 403

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           IA+++    GG  ++      G   +   
Sbjct: 404 IARALARQMGGDLVLVPS-GRGACFVFTF 431


>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
 gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
          Length = 916

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L + V     P+    +    +    LD+ + G      
Sbjct: 164 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 218 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 333

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503


>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
 gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
          Length = 932

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   SG    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513


>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 804

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/523 (18%), Positives = 195/523 (37%), Gaps = 40/523 (7%)

Query: 5   RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64
              +  +   L       L L +   M      + +   +   +   + +    V     
Sbjct: 153 ESEENFNFTKLFRAILFGLTLGFGIAMGLYNFSLYMFFRTRSYLYYFIMILFSTVYLASW 212

Query: 65  -----WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
                   +      +    L ++  +           +   +   +   ++   + + L
Sbjct: 213 DGLISPLFKPNYGRYYLPFILVLFYTSALFLFLFSMEFLYPEKKERYVKIIIFLYVVVNL 272

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISA-------------LSNFMLPYAVF 164
              L+ L          ++ Y      L+I                   + + + P A  
Sbjct: 273 L--LIPLSIFYPTHLNRISYYLGLVNNLIIVYFCIVRIRGGFKSAKNFLIIHLVFPVAGI 330

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L+      A+S   +    +    ++  +  ++     I    F+    + S   +   L
Sbjct: 331 LTNLSTFGAISIDYLSLHLLKLAFISQSVLFSVMLVQRIKELEFRLKDGLQSEIHKNIVL 390

Query: 225 IAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + +    +  ++    + ++ AE+ +  KS FLA+MSHE+RTP+N +LG  +++    + 
Sbjct: 391 LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL- 449

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N+  KEY+  +  S + LL +IN+ILD S+IEAG+  L     S+  ++ E   +L 
Sbjct: 450 ---NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLY 506

Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--- 396
             A++K I    +    +   V+ D   +RQ++ NL  N +KFT+  G V + V      
Sbjct: 507 PLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSR-GEVVLKVTQKNIS 565

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            S      ++ D+G GI   +   V  +F Q   +      G GLGL I + ++   GG 
Sbjct: 566 KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGV 625

Query: 456 FLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHESTQYKCY 494
             + SK  EG +        +P+   +  I E        K +
Sbjct: 626 LKLESKDGEGSKFTFTIDYDIPSALEIEKILEAEKTKDLEKSF 668


>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
          Length = 918

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
 gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
          Length = 1688

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 142/257 (55%), Gaps = 10/257 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+E++      +E ++RA+  + AKS FLA+MSHE+RTP+NAI+G S +     +G ++N
Sbjct: 1065 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1120

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + YI  +HRSG  LL++IN+ILD S+IEAG+  +       +   ++ I +++ +A 
Sbjct: 1121 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1180

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            EK + +   IDP L + +  D   + QVILNL+ NA+KFT   G V +TV         +
Sbjct: 1181 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTET-GSVSLTVALVESDDNSL 1239

Query: 404  S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +    + D G GI++  +  +  +F Q          G GLGL I+Q ++   GGQ  + 
Sbjct: 1240 TMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVG 1299

Query: 460  SKLREGVEVIAILPNTR 476
            S   +G E   +L  +R
Sbjct: 1300 SVFGQGSEFSFVLTLSR 1316


>gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
 gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
          Length = 587

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   +      ++  I +    
Sbjct: 354 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--HDQAALSAFLDIILKESDR 411

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS+ E   + LS   + L  ++ EC+ +L  +A++K I+I          
Sbjct: 412 LQSLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGW 471

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++QV +NLL+NA+ +T  GG++ V++         + +KD G GI + EIP +
Sbjct: 472 IKGDPHRLKQVFINLLTNAITYTPQGGKISVSLE-EKEDKVQVEVKDTGMGIDQDEIPRI 530

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  H G   + S++ +G      L
Sbjct: 531 FERFYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKVQL 582


>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 916

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 7/293 (2%)

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L+    I         ++    AE+     +L  +      + +        K  FLA+M
Sbjct: 835  LATQLAIAIQQASLVEQLQQELAERQQAELKLTQSNQQLAISNQELARATRLKDEFLANM 894

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLNAILG +E ++    G +N++ +K  +  I RS  HLL+LIN+ILD+++IEA
Sbjct: 895  SHELRTPLNAILGMTEGLQEGVFGMINDKQFK-ALETIERSSSHLLDLINDILDVAKIEA 953

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
            G+ +L  +AIS+  + +  ++ ++ +A +K I++  KI  +L  ++ DE+ +RQV++NLL
Sbjct: 954  GQIKLDCTAISVAALCQSSLVFIKQQALQKRIQVEIKIPLNLPDLFVDERRIRQVLINLL 1013

Query: 377  SNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            +NAVKFT   GR+ + V   S           I++ D G GI +  I  +   F Q   A
Sbjct: 1014 NNAVKFTPETGRISLEVTQVSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSA 1073

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            +    +G GLGL + + I+  HGG+  + S+L  G      LP T      PE
Sbjct: 1074 LNRQYEGTGLGLALVKKIVELHGGRVGLTSELGVGSCFTIELPCTPSTPSSPE 1126


>gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
 gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
 gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1233

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 140/270 (51%), Gaps = 11/270 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + +   ++     +  I     A++   + ++ AE  + AK  FLA+MSHE+RTP+N I+
Sbjct: 563 RDSNGRVTRMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGII 622

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +E+     +    N   +EY+G +  S   LL ++N+ILD S+IE+G+ ++     SL
Sbjct: 623 GMTELALDTEL----NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSL 678

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++RE +  L +RA +K +E+   + P +   +  D   +RQVI+NL+ NA+KFTA  G
Sbjct: 679 EHMLRETMKSLAVRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTAS-G 737

Query: 388 RVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            + V V    G          S++D G GIA  +  T+  SF Q   +      G GLGL
Sbjct: 738 EIEVDVQCLKGAPEGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGL 797

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I+  +++  GG   + S++ +G      L
Sbjct: 798 TISAQLVSLMGGSIALESEVGQGSNFYFTL 827


>gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 917

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 131/269 (48%), Gaps = 8/269 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +   +  +  AE  N AKS+FLASMSHELRTPLNAI+G+SE++  E       
Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPLNAIIGYSEMLIEEARDHKEE 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  I  +G+HLL LIN+ILDLS+IEA + ++     SL +++R+    +     
Sbjct: 457 ELVPD-LDKIASAGRHLLTLINDILDLSKIEANKMDVFLETFSLAELLRDVAATVAPLMA 515

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
                  Q  +  L  + +D+  +RQ + NLLSNA KFT  GGRV + V           
Sbjct: 516 RNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKFT-KGGRVILRVRREQRAEHDWL 574

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G+   +   +  +F Q   +      G GLGL I +S     GG   + S+
Sbjct: 575 VFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGLSITRSFCRLIGGVVTVESE 634

Query: 462 LREGVEVIAILPN---TRVLNFIPEDNHE 487
             +G      +P    + V    PE   +
Sbjct: 635 AGKGSVFTMEVPAKCESEVDRPPPEQAAQ 663


>gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 1025

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 138/255 (54%), Gaps = 11/255 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++I + ++A+    + +++AE    AK++FL++MSHE+RTP+NA++GF+ ++        
Sbjct: 623 EIITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQN----- 677

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   EY+  +  SG++LL LIN+ILD S+IEAG+ E      +L D+VR     +Q R
Sbjct: 678 PREDQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQR 737

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A EK I++   +D  L   V  D   + Q++ NL+SNA+KFT++ G+V V+    S   +
Sbjct: 738 AIEKGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSV-GKVVVSASLVSRNNE 796

Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           Y      +KD G GI   +   +  SF Q S        G GLGL I + ++   G    
Sbjct: 797 YTIVSFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQ 856

Query: 458 IRSKLREGVEVIAIL 472
           + S+  +G      L
Sbjct: 857 LDSEPGKGSTFSFNL 871


>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
          Length = 916

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503


>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1075

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 143/273 (52%), Gaps = 10/273 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             ++  + A+ +  + RK+AEE +LAK RFLA+MSHE+RTPLNAI+G   ++   ++   
Sbjct: 548 RDVSNKKKAQKVLIQARKKAEESSLAKERFLANMSHEIRTPLNAIIGMQRLLSKTSL--- 604

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  + Y+  I  S  +LL +IN+ILD+S+IEAG+ EL      L  ++R  +  L  +
Sbjct: 605 -EERQQRYLDAIGTSADNLLVIINDILDISKIEAGKLELENVGFDLCKLIRHLVFTLGYK 663

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A+EK I ++  ID ++   V  D   + Q++LNLL+NA+KFT + G+V ++         
Sbjct: 664 AEEKGIGLYANIDDNMHPIVLGDSVRLHQILLNLLNNAIKFTDV-GKVIISTSLVEANPD 722

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     + D G GI    I  V  SF Q   +I     G GLGL I + ++   GG+  
Sbjct: 723 TQTVCFEVSDTGRGIKAENIEAVFESFTQEDASITRKFGGSGLGLAIGRQLVELFGGKLT 782

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + S+  +G      L   +         HE TQ
Sbjct: 783 VTSEYSKGTTFSFTLTFKKETLDAIAPVHEVTQ 815


>gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 883

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 9/273 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            +    +  L  + E  +L   ELE       +    AE  + AKS FLA+MSHE+RTP+
Sbjct: 442 QVRDLALNELKDRTENLELTRRELEEKAERLKQANTDAEAASRAKSEFLANMSHEIRTPM 501

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            A+LG+++++  E+ G        + +  I R+G +LL LIN+ILDLS+IE+G   +   
Sbjct: 502 TAVLGYTDLLIEESWG---RPGSIQLLDVIKRNGHYLLELINDILDLSKIESGNLTIETI 558

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             SL++ ++E   ++++RA+ + +      + +L   + +D   ++Q+++NL+ NA+KF+
Sbjct: 559 QFSLLEKMKEIQSLMKVRAELRGLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFS 618

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             GG+V V   + +           I D G G+   +I  +   F Q   +      G G
Sbjct: 619 PDGGKVSVETSFLNSSADNPLLEFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTG 678

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ +    GG     S   EG      +
Sbjct: 679 LGLAISKRLAEMLGGDLTCESVPGEGTVFTLTI 711


>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
          Length = 932

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   V V +   SG    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513


>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 587

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHELRTP+ +I GF+E +    M   + ET + ++  I    +
Sbjct: 358 RRLE---KMRSEFVANVSHELRTPITSIKGFTETLLEGAM--QDEETCRNFLQIISDESE 412

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  +I +ILDLS+IE  R  L    + L D++   + ++  +AQ K + I         
Sbjct: 413 RLYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDI 472

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D+  ++Q+ILNLL+NA+ +T  GG++ +     S     I + D G GI E E+  
Sbjct: 473 WLMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTEADSEN-ITIQVMDTGIGIPEKELTR 531

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   A      G GLGL I + ++ N  G   + SK   G      LP 
Sbjct: 532 IFERFYRVDKARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTTFTVTLPL 586


>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
 gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
 gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
 gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 927

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
 gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
          Length = 1188

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL KS FLA+MSH
Sbjct: 624 WVLSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 683

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +  ++        K+Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 684 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 739

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL      L  ++   + +  L+AQE+ +E+      +   +   D   + QV++NLLS
Sbjct: 740 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 799

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +   +  +F Q   +   
Sbjct: 800 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 858

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GG+  ++S+L  G      +
Sbjct: 859 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 897


>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 927

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L + V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 600

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +++ E  N+ K  F+A++SHELRTPL +I  ++E +    +   + E   +++  I+  
Sbjct: 367 EQQKLE--NMRK-EFVANVSHELRTPLTSIKSYAETLLDGAL--EDRELAGKFLSVINSE 421

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              +  L+ ++L LSR++  + +     IS  D+VR C+  ++  ++EKN  +       
Sbjct: 422 ADRMTRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGE 481

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              + AD+  M QV+LN+L+NA+K+T  GG++ V +G       Y+ + D+G GI   ++
Sbjct: 482 ELEIVADKDRMEQVVLNILTNAIKYTPEGGKITVYIGRMYS-EVYVKVVDSGIGIPREDL 540

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F +   A      G GLGL IA+ I+  H G   + S+  +G EV   LP  
Sbjct: 541 GRIFERFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLPAA 598


>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +++   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 611

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 7/253 (2%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I  + V + ++++ +  A     ++  F+A++SHELRTPL  I  ++E +E   M   +
Sbjct: 360 IIGTIAVLQDVTEQEKLEA-----SRREFVANVSHELRTPLTTIKSYTEALEDGAM--ED 412

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E    ++  I    + ++ L+ ++L LSR ++   EL +   ++++++ + +     + 
Sbjct: 413 PELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQM 472

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           QEK I+    I   + + W D   + QV+ NL+SNA+K+T  GG + +    T  R   I
Sbjct: 473 QEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAI 532

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G GI + ++  +   F +   A      G GLGL IA+ I+  HGG   ++S+L 
Sbjct: 533 SVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELG 592

Query: 464 EGVEVIAILPNTR 476
           +G +V   LP  +
Sbjct: 593 KGTKVTFTLPAEK 605


>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O127:H6 str. E2348/69]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 993

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I  +E  K    + R  AE  N AKS FLA+MSHE+RTPLNA+LGF++V+    +   
Sbjct: 288 EDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNG 347

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +     +++  IHRSG HLL LIN+ILDLS+IE+G  +      SL DIV +    L+++
Sbjct: 348 DEAV--DHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVK 405

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A E+N+ +      ++   + +D   +RQV+ NL+ NA+KFT  G   +  ++  T    
Sbjct: 406 ADEQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNA 465

Query: 401 -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    + I D G G+   +   +  SF Q   +      G GLGL I++ +    G
Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMG 525

Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493
           G   + S++  G      LP    +      PE+     Q K 
Sbjct: 526 GSLTVHSEVGIGSTFRVELPTSIASLQDMVSPEELARLAQEKS 568


>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 918

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
 gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
           CMCP6]
          Length = 928

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L   V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   +  G        +KD G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSIDLQFMVKDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           ++    +    I     +  + +  +E+     D  RK A E +  KS FLA+MSHE+RT
Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+GF+E++    +        ++++  I +S + LL +IN+ILD S+IEAG+  L 
Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLNTIRKSSEILLTIINDILDFSKIEAGKLILD 361

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                L DIV E ++ML   A  KN+++     +    ++  D   ++QVI NL++NA+K
Sbjct: 362 RVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421

Query: 382 FTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           FT   G V +                 +SI D+G G++  +  ++  +F Q   +     
Sbjct: 422 FTQT-GEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I++ ++   GG+  + S+L +G      L
Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
 gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
           with GacA [Vibrio fischeri ES114]
          Length = 931

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 239 AMAISLSEYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +   ++    +E  ++Y+  I RS  +LL +IN+ILD S++EAG
Sbjct: 299 HELRTPLNGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAG 354

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        D + E + +L   A EK +EI  KID  + S +  D   ++QV+ NL+
Sbjct: 355 KLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLV 414

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NA+KFT  G   + V +   +         ++D G GI+E +   +  +F Q   +I  
Sbjct: 415 GNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISR 474

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I Q +++  GG+  + S+L +G      +
Sbjct: 475 RYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTI 513


>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1373

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 17/265 (6%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A+ + ++ +  AE  N AKS FLA+MSHELRTPLNAILGFS+++      P   
Sbjct: 877  ITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNR---DPSLT 933

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +  +  I+ SG+HLL LIN ILDLS+IEAGR  L+E++  L  ++     ML L+ +
Sbjct: 934  SEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVE 993

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396
             K + +  + D ++   +  DE  +RQV++NLL NA+K+T  GG V + V          
Sbjct: 994  TKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGG-VSLKVKQQSYPLEKS 1052

Query: 397  -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                     + D G GI+  EI T+  +F Q +   KS  QG GLGLPI++  +   GG 
Sbjct: 1053 PETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQ-QGTGLGLPISRKFVQMMGGD 1111

Query: 456  FLIRSKLREGVEVIAILPNTRVLNF 480
               +S+L  G      L   RV+  
Sbjct: 1112 IRAKSELGTGTSFEFNL---RVIPT 1133


>gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1180]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 637

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 152/354 (42%), Gaps = 3/354 (0%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           ++   EP         +      ++A   +  +  ++   + L F   +  +   ++   
Sbjct: 280 VIMFYEPVKTGNYSFILVVPKDEMLAGVTALRNKLIIVSVIALFFMGGLGYMIALSVTKP 339

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               +     ++         +    +  V         ++++  L+       +  +  
Sbjct: 340 IEDIVDDFKHISDGALHGKLDSRADTEVEVDFKEIPVGLNEILDALKKNSDELRKANEEL 399

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  K  FL+++SHEL+TPL  I G++E++    MG LN E   E    + R+ + L 
Sbjct: 400 KSLDRMKDEFLSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQI-EVQNKVVRNAERLK 458

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L++ +L LS+I+A   E     + + +I+   +  +++ A  K IE+   ++  L  + 
Sbjct: 459 RLVDSLLYLSKIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGIELEMNLEEDLPKIN 518

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  +  +I N++ NA+KFT  GG+V VT  +      +I +KD G GI E  I  +  
Sbjct: 519 GDKDKLTDMITNIVDNAIKFTPSGGKVTVT-SFKKEGDIHIVVKDTGIGIPEDMIDNLFQ 577

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
            F Q   +      G GLGL I+ +I   H G     S+   +G E+   +P +
Sbjct: 578 RFYQLDASRTRKYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEMHIEIPIS 631


>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
 gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
          Length = 927

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
 gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
 gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
 gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. W3110]
 gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
 gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
 gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
 gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
 gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
 gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
 gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
 gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
 gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9]
 gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B]
 gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O157:H7 str. FRIK966]
 gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
 gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
 gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
 gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
 gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
 gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
 gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
           Ss046]
 gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
 gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K12 substr. W3110]
 gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           HS]
 gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E24377A]
 gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           SMS-3-5]
 gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
           CDC 3083-94]
 gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
 gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
 gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli IAI1]
 gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli UMN026]
 gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. TW14359]
 gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
 gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
 gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
 gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1357]
 gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
 gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
 gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
 gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
 gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
 gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 675

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 176/408 (43%), Gaps = 19/408 (4%)

Query: 74  MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT 133
           +W + +     + L     ++           +         ++ L W        G   
Sbjct: 109 LWIVSSYMQAVSLLIAPVFLVRKLWAEKVFLTYFALTAALLASVFLGW-FPECYVEGVGL 167

Query: 134 PEYLTIYKSATLLIALSISALSNFM----LPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
             +    +    LI ++ +A  +       PY        +V+++      +++V    +
Sbjct: 168 TPFKVWSEYIISLILVAAAAFLHLRRQNFAPYVYGYLLASMVLSVIAHLAFTLYVDVYGI 227

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +L   L   +Y     F   +   S +   D L  EL   +      ++ AE  + AK
Sbjct: 228 LNVLGHVLKVGSYF---FFYKALVETSLRRPLDFLFWELAQQREELTLAKEEAERASRAK 284

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTP+N +LG S +     +   +    +E +  + +SG++L+++IN+IL
Sbjct: 285 SEFLANMSHEIRTPMNGVLGMSRL----ALDMSSEAQVRECLELVRQSGENLMDIINDIL 340

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IEAG+ +   +   L   +      LQ+ A ++ +     +DP++   +  D   +
Sbjct: 341 DLSKIEAGKIDFQHTNFDLGQTLEATFKPLQIMAAQRGLAFESDLDPAVPVQLLGDPGRL 400

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           RQV+ NL+ NA+KFT  GG + V V       T        ++D+G GI   ++  +  S
Sbjct: 401 RQVLTNLIGNAIKFTRKGG-IKVKVALQGQQETESACLLFEVRDSGVGIPADKLDRIFES 459

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           F Q   A    + G GLGL I++ ++   GG   + S++ +G      
Sbjct: 460 FSQVRHAPDLEQGGTGLGLAISKELVRMMGGGIQVESEVGKGSTFSFT 507


>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
 gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
          Length = 811

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 70  IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 126

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 127 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 183

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 184 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 239

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + + + +L   + +K +E+   I   +   V  D 
Sbjct: 240 DVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 299

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QVI NL+ NA+KFT  GG + + V   +         + I+D G GI E +   + 
Sbjct: 300 LRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLF 358

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 359 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 409


>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
           MO6-24/O]
 gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
           MO6-24/O]
          Length = 928

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L   V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   +  G        +KD G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
 gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
 gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 10/253 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   + ++    E +  A+  NLAKS FLA+MSHE+RTP+N ++G + ++    + P   
Sbjct: 845  ITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTTDLTP--- 901

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++Y+ +I  S   L  LI++ILDLS+IE+G+  L  +A SL   +++ +   Q   Q
Sbjct: 902  -EQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFIQ 960

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +K I +  +I   L  ++  D+   RQ++LN+L NA+KFT   G++++         + I
Sbjct: 961  QKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQ-GQINIVAELVEQHDRDI 1019

Query: 404  SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++    D G G++E     +   F Q   +      G GLGL I + +    GG+  + 
Sbjct: 1020 HVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVE 1079

Query: 460  SKLREGVEVIAIL 472
            S+   G      L
Sbjct: 1080 SREGAGSCFYIEL 1092


>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
 gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
 gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 927

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E    + E    +   +  R  AE    AKS FLA+MSHE+RTP+N+I+GF  +++   
Sbjct: 911  VECMRNVTERRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSAD 970

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            +        +EY+  +  S   LL++I +ILD S+IEAG++ L      L  ++ +   M
Sbjct: 971  LDS----AQREYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNM 1026

Query: 339  LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            + ++A+ K I+    + P +   +  D   + QV+ NL++NAVKFT   G V++ V    
Sbjct: 1027 VSVKAESKGIDFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDR-GEVNLIVTCEE 1085

Query: 398  ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       ++D+G G++  E+  +  SF Q   +      G GLGL IA+S++   G
Sbjct: 1086 NCTGEASIKFIVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMG 1145

Query: 454  GQFLIRSKLREGVEVIAI 471
            G   + S   EG      
Sbjct: 1146 GTVSVESHPGEGSSFYFT 1163


>gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 664

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 1/302 (0%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A     ++   +       + AT  +        L      + + +A+ +     L    
Sbjct: 364 ADGRIFLIRERLTADGGVVITATDATDLKVKEQTLEAQVQALHAARADAEQHAEHLARMT 423

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            +    ++RAE  +  KS+FLA+MSHELRTPLNA+LGFSE+++ E  GPL  + YKEY  
Sbjct: 424 DMLTREKERAEAASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYAD 483

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           DIH SG HLL+LIN+ILD+S+IEAG+Y L +   +L  I+     M++ RA E ++ +  
Sbjct: 484 DIHASGHHLLSLINDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQV 543

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           ++      V  D + ++QV++NLL+NA+ FT  GGRV + V      G  + + DNG GI
Sbjct: 544 ELPDPALVVNVDVRAIKQVLINLLANAITFTPAGGRVRLGV-RVHDDGVAMYVADNGIGI 602

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E E+P +L  F Q   A +   +G GLGL ++ +++  H G   + S++  G  V   L
Sbjct: 603 PEEELPRLLRPFEQIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRL 662

Query: 473 PN 474
           P 
Sbjct: 663 PA 664


>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 822

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/523 (18%), Positives = 197/523 (37%), Gaps = 40/523 (7%)

Query: 5   RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA---- 60
              +  +   L       L L +   M      + +   +   +   + +    V     
Sbjct: 171 ESEENFNFTKLFRAILFGLTLGFGIAMGLYNFSLYMFFRTRSYLYYFIMILFSTVYLTSW 230

Query: 61  -NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
             + +   +      +    L ++  +           +   +   +   ++   + + L
Sbjct: 231 DGLISPLFKPNYGRYYLPFILVLFYTSALFLFLFSMEFLYPEKKERYVKIIIFLYVVVNL 290

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISA-------------LSNFMLPYAVF 164
              L+ L          ++ Y      L+I                   + + + P A  
Sbjct: 291 L--LIPLSIFYPTHLNRISYYLGLVNNLIIVYFCIVRIRGGFKSAKNFLIIHLVFPVAGI 348

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L+      A+S   +    +    ++  +  ++     I    F+    + S   +   L
Sbjct: 349 LTNLSTFGAISIDYLSLHLLKLAFISQSVLFSVMLVQRIKELEFRLKDGLQSEIHKNIVL 408

Query: 225 IAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + +    +  ++    + ++ AE+ +  KS FLA+MSHE+RTP+N +LG  +++    + 
Sbjct: 409 LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL- 467

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N+  KEY+  +  S + LL +IN+ILD S+IEAG+  L     S+  ++ E   +L 
Sbjct: 468 ---NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLY 524

Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--- 396
             A++K I    +    +   V+ D   +RQ++ NL  N +KFT+  G V + V      
Sbjct: 525 PLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSR-GEVVLKVTQKNIS 583

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            S      ++ D+G GI   +   V  +F Q   +      G GLGL I + ++   GG 
Sbjct: 584 KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGV 643

Query: 456 FLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHESTQYKCY 494
             + SK  EG +        +P+   +  I E        K +
Sbjct: 644 LKLESKDGEGSKFTFTIDYDIPSALEIEKILEAEKTKDLEKSF 686


>gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-272]
 gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-227]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + +++   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLVAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 762

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F + + + +  + +  L     K++  A++     +  +  + A+  N AKS+FL +MSH
Sbjct: 196 FSSILIFAVISALIIYLLILKRKEEYEAQMRQ---ILRQALESAQTANAAKSQFLFNMSH 252

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ++RTP+NAI+G + +     +     +  ++Y+  I  S +HLL LIN++LD+S+IE G+
Sbjct: 253 DIRTPMNAIIGMTTLAL---IHLNEPQKIRDYLVKISSSSKHLLELINDVLDMSKIENGK 309

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L++    L +++     ++  +A  +++ +    D     V  D   + Q++LN+  N
Sbjct: 310 IALNDEEFVLPELIEHFCTIILQQAHTRHLTLDINTDLIHEKVTGDTLRINQMLLNIAGN 369

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+KFT  GG++ + +     +          I D G G+    I  +   F +   +I +
Sbjct: 370 ALKFTPAGGKIDIQIRELPPQYAGYGTYQFIISDTGIGMPADFIEKIFEPFERAHNSIGN 429

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +G GLG+ I ++I+    G+  + S+  +G      +P  
Sbjct: 430 KIEGTGLGMAITKNIVDMMNGRIDVESEPGKGTTFTVTVPLK 471


>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TPL +I GF+E +          E  ++++  IH   + +  L
Sbjct: 350 LEQMRKDFVANVSHELKTPLTSIKGFAETLLDGAQDV--PEIREQFLNIIHDESERMQTL 407

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L+LSR+E   Y+L  + + +  ++ E   +LQ +A EK + I  + +  +  + AD
Sbjct: 408 VEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEV-FIRAD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV++NL++NA+ +T  GG V +++         + IKD+G GI   E+  +   F
Sbjct: 467 LNRLKQVVVNLVANALNYTPNGGNVWISLE-DGEEAVMLRIKDDGIGIHPKEMQRIFERF 525

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   A      G GLGL I + I+  H G   + S+  +G      LP  
Sbjct: 526 YRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPKK 576


>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 932

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   SG    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 155/386 (40%), Gaps = 20/386 (5%)

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA----------LSNFMLPYA 162
                G    L+ L EP   T   L  +  A     +   A           S   L   
Sbjct: 294 AVALTGSADGLIALFEPARETFRLLAAHPGALSAFGMPPGAQSFDARRIEPFSTAWLSQQ 353

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             +S  P  V  + Q++    ++           L            ++V  L    E  
Sbjct: 354 PVISNTPPTVPEA-QSLPWRSLVVPVEGEGENRLLIVVIDKDEPYDDADVHRLILLGEGV 412

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
               +    +   +  RK+AE  + AKS FLA+MSHE+RTPL+ I+G +++    T+   
Sbjct: 413 LGHVKDRARERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQM----TLSQT 468

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +E++  I  S + LL ++N+ILD S+IEAG+ E S     L +I+   +      
Sbjct: 469 PRPEVREHLELILDSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFS 528

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           +++K + +  +I   L  +   D   + QV+ NL+ NA+KFT   G V V          
Sbjct: 529 SRQKGLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDK-GEVAVEFRLLRPGDP 587

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI E  +P +   F Q   +      G GLGL I++ ++   GG   +
Sbjct: 588 MLVECSVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGV 647

Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484
           RS+  +G      +          E 
Sbjct: 648 RSRPGQGSVFSFTVSLRPAQEECSEA 673


>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
 gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
          Length = 927

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
 gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
          Length = 1088

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 17/334 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                   L F  V + +   +++   +       +     +    +      ++ +   
Sbjct: 306 AAQVQEASLQFLIVTLTIWLVSLILATLGYFLSNEITRNIKNLEDVLKRVAEDTSDEDDE 365

Query: 217 CQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                         A  L +       E ++ A+E + AKS FLA+MSHE+RTPLN I+G
Sbjct: 366 TAVINLQTADGTAQAYDLLEKIIAQTREDKESAQEASEAKSMFLANMSHEIRTPLNGIVG 425

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F+E+++   +G    E   E++  I +S ++LL +IN ILDLS+IE+ + E+ +   + I
Sbjct: 426 FTELLKDTGLG----EEQHEFVEIIEKSSENLLEIINNILDLSKIESNKLEIEDIVFNPI 481

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
           D     + +  +RA EK+I++   IDP+L   +  D   ++++I+NLLSNAVKFT+  G 
Sbjct: 482 DEFESAVEVYAVRASEKHIDLGCFIDPTLEHPLKGDPTKIKEIIINLLSNAVKFTSSAGS 541

Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           ++V +                ++D+G G+   +   +  +F Q   +I     G GLGL 
Sbjct: 542 INVDIRRVECDQDGKTRVRFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLT 601

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           I+   +   GG+  + S+   G      +    V
Sbjct: 602 ISSRFVELMGGELDLHSETGSGTTFFFTIDFEEV 635


>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
          Length = 583

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 13  IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 69

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 70  DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 126

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 127 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 183 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 242

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 243 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 302

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 303 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 352


>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
 gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
          Length = 1594

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 140/255 (54%), Gaps = 9/255 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A++  +     A++ N AKSRFLA+MSHE+RTP+N ++G  +++    +    +
Sbjct: 942  ITDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRETNL----S 997

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                  +  I  S   LL +IN+ILD S+IE+G+ EL  + ++++++V + +  L + A 
Sbjct: 998  RDQVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAH 1057

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRG 400
            +K++ ++ +++ +L   +  D    RQV+LNLL NA+KFT      G V V VG+T    
Sbjct: 1058 QKDVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTE-GE 1116

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I+++DNG G+ + ++  +   F Q   +      G GLGL I++S +   GG+  + S
Sbjct: 1117 LRIAVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTS 1176

Query: 461  KLREGVEVIAILPNT 475
            K   G      +P  
Sbjct: 1177 KHHHGSRFTFTIPVE 1191


>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 919

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISGVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  +F 
Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 16/262 (6%)

Query: 224 LIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +I   E   + S E     ++ AE+ + AKS FLA+MSHE+RTP+N +LG  +++    +
Sbjct: 163 MIKRKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTEL 222

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G    +  +  +    RS   LL L+N+ILD SRIEA +         L   V   + +L
Sbjct: 223 G----DEQRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEIL 278

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              A+ K + +  ++ P +  +V  DE  +RQV++NL+ NAVKFT   G+V VT      
Sbjct: 279 AFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDR-GKVEVTAARAER 337

Query: 399 RG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +         IS++D G GIA  E   +   F Q   A      G GLGL + + I+   
Sbjct: 338 QSDPLRTAIRISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAM 397

Query: 453 GGQFLIRSKLREGVEVIAILPN 474
           GG   + S+  +G      +P 
Sbjct: 398 GGAIDVESQSGQGSTFTITIPL 419


>gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 975

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 159/305 (52%), Gaps = 5/305 (1%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + +     +++   +   L FF         + +++++    +   + E + A+    + 
Sbjct: 407 LRAGFGFPVTVGREVVAVLEFFACDAPPPDPALLRVMTNIGAQLGRVIERKRAEESLRQA 466

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE+ + AKS FLA+MSHELRTPLNAI+GF+ ++       L  + + E +  I  S 
Sbjct: 467 KEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKEALPTKQF-ENLEKILASS 525

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL+LIN ILDL+++EAGR E+  S  +L  ++  C+  ++   + + + + + ++   
Sbjct: 526 EHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVEPLIKSEGVRLVRDVEDPP 585

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           + +  DE+ +RQ+++NLLSNA+KFT   G V + V  ++G     ++ D G GI +  + 
Sbjct: 586 TMLRTDEEKLRQILINLLSNAIKFTEA-GSVTLRV-RSAGEHVEFAVTDTGIGIPQEALS 643

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q   +   +  G GLGL I+  +    GG   + S++ +G      +P    +
Sbjct: 644 AIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVESRVGQGSTFTLSIPPR--I 701

Query: 479 NFIPE 483
              PE
Sbjct: 702 AGAPE 706


>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
 gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 928

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L   V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   +  G        +KD G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 11/303 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +  ++     L   +   L+  L         + + N      Q   D+L +    A+++
Sbjct: 167 AIGSLFLGIGLTYFITKKLSQPLVSMEKAARQIARGNYNTRIIQKSGDELGSL---ARAI 223

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           +D      +  N  +  F A++SHELRTP+  + G+S+V+          E   +Y+  I
Sbjct: 224 NDLA-FSLQRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRW--KTEEERNQYLEII 280

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK- 353
                 L  L++++ DL+++E GR+ L    +++ +I++  +     +A E+N++I  + 
Sbjct: 281 DHEATRLTYLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRG 340

Query: 354 --IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              D   S V  D   + QV++NL+ NA+K+T   G + +    ++     I ++D G G
Sbjct: 341 GLSDKDDSIVLGDPLRLEQVLINLVENAIKYTKE-GSITIYT-VSNDENIKIKVRDTGIG 398

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           + E E+P +   F +   +   A  G GLGL I + ++  H G   + S + EG E   I
Sbjct: 399 MEEEELPYIFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTII 458

Query: 472 LPN 474
           LP 
Sbjct: 459 LPK 461


>gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
           REL606]
 gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli B str. REL606]
 gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1019

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 130/252 (51%), Gaps = 9/252 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +E  KRAE  N AKS FLA+MSHE+RTP+NAILGF ++++    G + ++  + Y+  
Sbjct: 522 ALEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDA 577

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I   G+ L++LI++ILDLS+IEAG+ EL    + L  +++E   +    A  K + +   
Sbjct: 578 IAAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQIN 637

Query: 354 IDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDN 408
            +P++  + A DE  +RQ++ N++ NA+KFT  G   + V         +    I + D 
Sbjct: 638 FEPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADT 697

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +   +  +F Q          G GLGL I + +    GG   + S+L  G   
Sbjct: 698 GIGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVF 757

Query: 469 IAILPNTRVLNF 480
               P+ ++   
Sbjct: 758 TFTFPDVQITQS 769


>gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
 gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
          Length = 883

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  ++   E +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 643 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 698

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  +  +   LL LI++ILDLS+IEAG ++ +E  + +  +  + ++ ++++A+
Sbjct: 699 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 758

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+EI          + +D   + QVI N ++NA+KFT   G + V             
Sbjct: 759 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 816

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI       +   F +      S   G GLGL I +SI+   GG+  + S+  +
Sbjct: 817 VADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 872

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 873 GSCFWFTLPIK 883


>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7
           EDL933]
 gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 918

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 928

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 133/261 (50%), Gaps = 12/261 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E    + E ++ +      +  AE    AKS FLA MSHE+RTP+N+ILG SE++E  +
Sbjct: 258 VECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEETS 317

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +        K Y+  +H SG+ LL +IN+ILD S+IEAG+ +L      LID+V     +
Sbjct: 318 LDF----DQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRI 373

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
           L L+AQEK +++   + P +   V  D   ++Q+++NLLSNA+KFT   G V + +    
Sbjct: 374 LGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFT-EHGEVTLHILPGP 432

Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    +++ D G GI + +  +V  SF Q   +      G GLGL I++ ++    
Sbjct: 433 LPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMD 492

Query: 454 GQFLIRSKLREGVEV--IAIL 472
           G   I S    G        L
Sbjct: 493 GGIRIESNEGAGTTFLLTVRL 513


>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
 gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 927

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 916

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 16/370 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFF---PVVVAL 174
           L W  L L   GT    Y +++ S  L+   L+++AL    +  ++          V  L
Sbjct: 148 LGWVELELSHQGTLLSGYRSLFASLLLIAGGLAVTALLALRMSRSINGPLREIKAGVAQL 207

Query: 175 STQAIMSMHVL--DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
               + +         +  + A        +     +    I     +    +  +E+  
Sbjct: 208 KDGHLQTRLPPLGSHEMDELAAGINRMAEALQNAQEELQHSIEQATEDVRQNLETIEIQN 267

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P      ++Y+ 
Sbjct: 268 IELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLS 323

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351
            I +S   LL +INE+LD S+IEAG+  L     +L D++++ + +L   A EK +E+  
Sbjct: 324 TIEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVS 383

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408
                +  ++  D   ++QV+ NL+SNA+KFT  G  V    V    T      IS+ D 
Sbjct: 384 LIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDT 443

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+++ ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E 
Sbjct: 444 GIGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 503

Query: 469 --IAILPNTR 476
                LP  R
Sbjct: 504 WITLTLPKAR 513


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 10/270 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +S     + +A E + AK  FLA+MSHE+RTP+NAILG S +  L  +    N
Sbjct: 572 VTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDL----N 627

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y+G+I ++G+ LL +IN+ILD S+IEAG+  +        +++     ++ ++A+
Sbjct: 628 DKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAK 687

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+   IDP+L   +  D   + Q+I+NL  N+VKFT   G + +     +   + I
Sbjct: 688 EKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFT-ESGEIIIRARKVTDVNEII 746

Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            I+    D G G+ E ++  +  SF Q   +I     G GLGL I++S +   GG+  + 
Sbjct: 747 EIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVE 806

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S+  +G      +   R  + I E   ++T
Sbjct: 807 SQPGKGSTFSFTIRCGRSNSSIKEQIAKTT 836


>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 927

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 568

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 4/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL  I  + E +       ++ E  K ++  I      +  L
Sbjct: 342 LDAMRKEFVANVSHELRTPLATIKSYVETLL---YSDVDAEYLKRFLKIIDSETDRMTRL 398

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS++++    L     +L +++ + I  L + A +KN ++   +      V+ D
Sbjct: 399 VKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYID 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  M QVI+NL++NA+K+T   G + V   +         ++DNG GI + ++P +   F
Sbjct: 459 KDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENFATFIVEDNGIGIPKEDLPRIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   A      G GLGL I + I+  H G+  I S++ +G  V   LP
Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 639

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 161/362 (44%), Gaps = 20/362 (5%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIY---KSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
            G    +L +  P +              A  LI L I+ + ++++   +          
Sbjct: 291 NGKIIGMLFVGTPESKFLALQADVRNQTFAVGLIGLFIALMVSYLINRGIISPL------ 344

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
              +              ++  +   F  +     K            + L    E  K+
Sbjct: 345 EQLKQGAERVSNGRYDQKVIVDSDDEFGELAKAFNKM---ATQINISDEKLKKHAEELKA 401

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +E +    E +  KS  +A +SHELRTPL +I G+ E++   TMG + N++ K+ +  
Sbjct: 402 SYNELK----ELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQKKCLQV 456

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
              +   L  LI  +LDLS+IE G  E+    ++L  IV + I  L+  A EKNI++ ++
Sbjct: 457 ADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKLNRE 516

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           ++    ++ AD+  + QV+ NL+ NA+KF+     + ++ G       ++ + D+G GI 
Sbjct: 517 VEE--ITIEADKDRITQVLTNLIENAIKFSPANESIMIS-GVLEDEHVHLKVTDHGAGIP 573

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++  V   F Q   + K  + G GLGL + +SI+  H G   + S+L +G     +LP
Sbjct: 574 KKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHILLP 633

Query: 474 NT 475
            +
Sbjct: 634 IS 635


>gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   + ++ V            I E +  ++L  + ++ AE  + +KS FLA+MSHE+RT
Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRT 294

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G  ++       P       +Y+  I  S   LL LIN+ LDL+R+E G+  + 
Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAID 352

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           +    L DI+ +   ++  RA EK +++   + P++   +  D   + QV++NL SNA+K
Sbjct: 353 QVPFDLSDILNKLEKLMGERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           F+   G V ++              ++++D G GIA  ++ T+   F Q   +      G
Sbjct: 413 FSEK-GEVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGG 471

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNH 486
            GLGL IA  ++   GG+  ++S+  +G       P  R       IPE   
Sbjct: 472 TGLGLSIANRLVELMGGKLEVKSEPGQGSSFFFNCPLRRSAQRKAIIPEQED 523


>gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 687

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 6/264 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+  +   ++ AE  N AKS FLA+MSHELRTPLNAI+G+SE+++ E      +
Sbjct: 179 ITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQD 238

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   + +  IH +G+HLL LIN++LD+S+IEAG+ +L   A  +  +V + +  +    Q
Sbjct: 239 DLIPD-LAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQ 297

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +    +       + ++ AD   +RQ + NLLSNA KFT+  G + ++     G     +
Sbjct: 298 KNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSD-GTITLSTRRQ-GEWIEFA 355

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+A  E+  +  +F Q   +      G GLGL I+++     GG   + S+   
Sbjct: 356 VADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGR 415

Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488
           G      LP    ++  P+    +
Sbjct: 416 GTTFTVRLPA---VSASPKAARPA 436


>gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 606

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +    +   + E  + ++  I+  
Sbjct: 367 AVRRLE---RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMARSFLQIIYDE 421

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI +IL+LS+IE+ R  L  S + +  IV   I M++  A++K+I +   ++  
Sbjct: 422 SDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENE 481

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGP 410
           L  + ADE  +RQ+++NLLSN + +T  GGRV + V +              I I D G 
Sbjct: 482 L-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGI 540

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   A   +  G GLGL I + +   H G   + S+  +G     
Sbjct: 541 GIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNI 600

Query: 471 ILPN 474
            LP 
Sbjct: 601 ELPV 604


>gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 931

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        N 
Sbjct: 686 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 741

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  +Q++ +
Sbjct: 742 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 801

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           E N+E+      +   + +D   + QVI N ++NA+KFT+ G    + VG+   G     
Sbjct: 802 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 857

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI       +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 858 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 913

Query: 464 EGVEVIAILPNTRVLNF 480
           +G      LP   V++ 
Sbjct: 914 KGSRFWFSLPCFVVMSE 930


>gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 931

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        N 
Sbjct: 686 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 741

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  +Q++ +
Sbjct: 742 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 801

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           E N+E+      +   + +D   + QVI N ++NA+KFT+ G    + VG+   G     
Sbjct: 802 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 857

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI       +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 858 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 913

Query: 464 EGVEVIAILPNTRVLNF 480
           +G      LP   V++ 
Sbjct: 914 KGSRFWFSLPCFVVMSE 930


>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
 gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
          Length = 768

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 12/342 (3%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYITYHLFKSN 211
               +L  AV      + +      I+   + ++S A     +  L     +T  LF   
Sbjct: 149 FVVLLLSQAVKTFMVALFIIFVVYKIIIRPLTEMSDAVSKFDSEQLPQPLELTTRLFDDE 208

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  L+     +  +          +  +++AE+ NL KS FLA+MSHE+RTP+N ++G +
Sbjct: 209 ITTLTTSY--NASVKHTRHHYRELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTA 266

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++   MG       KE++  ++ S   LL+LIN+ILD S+IE+G+  L+++ ++L ++
Sbjct: 267 SLLQEMPMGR----EQKEFVDMLYSSSITLLDLINDILDFSKIESGQLILAKNPLNLFEL 322

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG--- 387
            +E      + A++K I +   ID ++   V  D   +RQV+ NLLSNA+KFT+IG    
Sbjct: 323 CKEIESNFSIIARQKQIALVCHIDDNIPDMVLGDITQLRQVLNNLLSNAIKFTSIGCVRL 382

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +     +  G    I D+G GIA      +   F Q   +      G GLGL I +S
Sbjct: 383 NIKLMDRKDNNAGIMFQIIDSGIGIAAENQQKIFEKFQQADGSTTRNYGGTGLGLAICRS 442

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           I+       L+ SK  +G      +    +   +   + E +
Sbjct: 443 IVKLMDSDILVYSKPGKGSRFEFAVQFESIDELLQRPDSEQS 484


>gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        N 
Sbjct: 676 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 731

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  +Q++ +
Sbjct: 732 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 791

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           E N+E+      +   + +D   + QVI N ++NA+KFT+ G    + VG+   G     
Sbjct: 792 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 847

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI       +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 848 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 903

Query: 464 EGVEVIAILPNTRVLNF 480
           +G      LP   V++ 
Sbjct: 904 KGSRFWFSLPCFVVMSE 920


>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
 gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
          Length = 1969

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            D +     A       ++ AEE N AKS FLA+MSHE+RTP+NAI+G + +++ +     
Sbjct: 1204 DDVTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKRD----- 1258

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                    +  +  + QHLL +IN+ILD S+IEAG+  L      L +++     +L  +
Sbjct: 1259 ATPQQVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEK 1318

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
            A +K +E    I      +  D   + Q++LN  +NAVKFT   G + +           
Sbjct: 1319 AVDKGLEFITNIADLPQYLHGDGLRLGQILLNFAANAVKFT-TNGSISLHAEQLGEESDT 1377

Query: 400  -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++ D G G+ E +   +  +F QG  +      G GLGL I++ +    GG+  +
Sbjct: 1378 IWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDLMGGEIGV 1437

Query: 459  RSKLREGVEVIAILPNTRVLN 479
            +S+   G +    LP  RV+N
Sbjct: 1438 KSEPGSGSKFWVDLPFGRVVN 1458



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLG 441
               GR+ +  G +      + I D G G+ +  I  +            +    G GLG
Sbjct: 1   MEAQGRITICTG-SDAHTICVEISDTGCGMPQSVIDKIFDPLF-----TTNPVGLGTGLG 54

Query: 442 LPIAQSIMANHGGQFLIRSKLREG 465
           L I    M  H G   + S + +G
Sbjct: 55  LSIYADNMRRHSGTIAVNSVIGDG 78



 Score = 36.8 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 181  SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
            +   ++ ++             I   L    +            I+E +  ++   E ++
Sbjct: 1004 TGAAVNKTVELSAICKDGREIPIALSLSAVQLNASWHAVAIVRDISEAKQHEAELLEAKQ 1063

Query: 241  RAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            RAE+   AK++        +A+ + EL+         S +         ++   +     
Sbjct: 1064 RAEQSEQAKTQVLEQLEDMVANRTRELK--------QSNLKLQAIFDAASSGIAQIKDRT 1115

Query: 294  IHRSGQHLLNLI----NEILDLS 312
            I R  + +  +      E+L+LS
Sbjct: 1116 IIRCNRRMEEIFGYGPGEMLNLS 1138


>gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
          Length = 918

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1248

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 10/264 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +         D    +E+     +    RA+E   AK  FLA+MSHE+RTP+N ++G + 
Sbjct: 559 EQRRSVDSLADYANRMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAG 618

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++   ++     +  + +   I  SG+ LL L+N+ILD S+IEAG+ EL      L+ I+
Sbjct: 619 LLLDTSL----TDEQQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQIL 674

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + +  + + +  K +E+    DPS+   +  D   +RQ++ NL+ NA+KFT   G+V V
Sbjct: 675 DDVMDSMAVGSHSKGLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQ-GQVSV 733

Query: 392 TVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   + +        S+ D G GI   +   +   F Q   +      G GLGL I++ 
Sbjct: 734 RVSIVNEKESDCILKFSVSDTGIGIQSDKQVLIFEQFNQVDASTTRKFGGTGLGLAISKR 793

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S L EG      
Sbjct: 794 LVEMMGGTIGVESNLGEGASFWFT 817


>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 918

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 784

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 9/279 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I     +    +L+        + E +  +     + + A   N +KS FLA+MSHE+RT
Sbjct: 331 IARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRT 390

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+ AILG+++V+    +G L +   +  +  I R+G+HLL+LIN+ILDLSRIEAG+  + 
Sbjct: 391 PMAAILGYADVL----LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVD 446

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
             ++ L  +V +   ++Q+RA EKN++   + +  +   +  D   +RQV++NL+ NA+K
Sbjct: 447 AESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIK 506

Query: 382 FTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT   G V + V +  G        SI D G GI++ +   +   F QG  ++     G 
Sbjct: 507 FTDE-GSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGS 565

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           GLGL I+Q ++    G+  + S+L EG      LP   V
Sbjct: 566 GLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLPVHSV 604


>gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 652

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 17/355 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATA 196
            I  S  + I      + + ++ Y V      +  V+ +     +    +IS        
Sbjct: 296 AIVVSIAMFIVAVTLFVLHAIVRYLVLQPLLHLRDVSDAITHGDTNQRANISTDDEFREL 355

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              F  +  HL ++  ++ S   E D  + +         E        N  K+ FLA+M
Sbjct: 356 ADAFNRMLRHLTETQTQLQSVNRELDARVDQFAQLNLQLYEA-------NRLKTDFLANM 408

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+I+GFSEV++        +E  + Y  +I +SG+ LL +IN+ILDL+++EA
Sbjct: 409 SHELRTPLNSIIGFSEVLQ---GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEA 465

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ E+  S   L  +V     M+Q  +++KNI +  ++   L   + D   + Q++ NLL
Sbjct: 466 GKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLL 525

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIAI 431
           SNA+KFT  GG + V V         +S+ D G G+A+ + P +   F Q         +
Sbjct: 526 SNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGL 585

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                G GLGL I + +    GG+   +S+L  G     ILP  R+ +   E+N 
Sbjct: 586 TREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILP-YRLSDHEMEENE 639


>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 918

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 918

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 568

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL  I  + E +       ++ E  K ++  I      +  L
Sbjct: 342 LDAMRKEFVANVSHELRTPLATIKSYVETLL---YSDVDAEYLKRFLKIIDSETDRMTRL 398

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS++++    L     +L +++ + I  L + A +KN ++   +  +   V+ D
Sbjct: 399 VKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYID 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  M QVI+NL++NA+K+T   G + V   +         ++DNG GI + ++P +   F
Sbjct: 459 KDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENFATFIVEDNGIGIPKEDLPRIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   A      G GLGL I + I+  H G+  I S++ +G  V   LP
Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
 gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
          Length = 927

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L + V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
          Length = 738

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 13/263 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             ++     RK+AE  N AKS FLA+MSHE+RTP+N I+G ++++    +    N+  + 
Sbjct: 199 QHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLLSETQL----NDEQRL 254

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I  SG+ LL +IN++LD S+IEA +  L      L   + E +++LQ  A++K + 
Sbjct: 255 YVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEVVMLLQPSARDKGLT 314

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403
           +    D  L +++  D   +RQ++ NL+ NAVKFT   G V + V             +I
Sbjct: 315 LLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLH-GHVLIRVTGVPDESRNDCDIHI 373

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I+D G GI   +I  +   F Q          G GLGL I + +++  GG   + S   
Sbjct: 374 AIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLISLMGGTLWVDSDPG 433

Query: 464 EGVE--VIAILPNTRVLNFIPED 484
           +G        LP        P  
Sbjct: 434 KGSCFGFRLTLPTVVGSQPAPPA 456


>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
          Length = 927

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1175

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 12/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L+  +    E RK+AE  N +KS FLA+MSHE+RTPLN I+GF++++   ++ P   
Sbjct: 636 ISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLAPF-- 693

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  +H S   L++LIN+ILD S+IEAG+ EL+E    LI++  + + +++ +A 
Sbjct: 694 --QQKYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQAH 751

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTS 397
           +K +E+  +I P +   V AD   +RQ+++NLL NAVKFT   G V +TV         +
Sbjct: 752 QKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQ-GEVALTVTASNTIAQEN 810

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  I+D G GI    I  +  +F Q  ++      G GLGL I+  ++   G +  
Sbjct: 811 EAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSKLK 870

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S    G      L        I
Sbjct: 871 VNSVQGTGSTFYFDLKLKTEEEPI 894


>gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 159/382 (41%), Gaps = 15/382 (3%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFL 165
           +  L   +    L   +   +         +  + K+A  LI           L  A+  
Sbjct: 33  QRRLSDLERFRVLLDAVSDAILLVDIASNRIIDLNKAACRLIGRCKPEAVRISLRDALPG 92

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                     +    +    +      +  +      +  +L     +           I
Sbjct: 93  ETADAWGEHLSAGGEAGLPTEERFQMSMRASDGHIVPLEINLSLHYFESKRYAVAVVRDI 152

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + + A+    + ++ AE  +  KS FLA++SHE+RTP+N I+G  E+     +   ++ 
Sbjct: 153 TDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL----ALLTASDV 208

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +EY+G I +SG  LLN+IN+ILD S+IEAGR +L         +V   +  L   A+E
Sbjct: 209 QTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAKE 268

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           K++ +   IDP +   +  D+  +RQV+ N++ NA+KFT   G V V V  T   G    
Sbjct: 269 KDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTER-GSVVVRVDRTEPEGLAGG 327

Query: 402 -----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S++D G GI   +   +  SF Q   +      G GLGL I++ ++   GG+ 
Sbjct: 328 ESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRI 387

Query: 457 LIRSKLREGVEVIAILPNTRVL 478
            + S   +G      +  +R  
Sbjct: 388 WVESDPGKGSTFHFTVRLSRAA 409


>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1320

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 152/325 (46%), Gaps = 15/325 (4%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                  +++     + +         +     F  ++     + + ++    +E+   + 
Sbjct: 735  TTSFAFSIAPPIYRTWYAYLTYFLSFILIVSLFSKWLLSRARRHSAQLEKVVSERTRELD 794

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            E          + K A++   AKS+FLA+MSHE+RTP+N ++G   ++    +      T
Sbjct: 795  ET---NDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSN----T 847

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             ++Y+  I  S + LL +IN+ILD S+IEAG+ ++      L+D+V + + +     ++K
Sbjct: 848  QRDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQK 907

Query: 347  NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYIS 404
             +++   I  S+S+    D   +RQ+++NL+ NA+KFT   G +++++          I 
Sbjct: 908  KLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFT-TSGDIYISIESGDDPDEITIE 966

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            ++D+G GI + ++  +   F Q   +I     G GLGL I++ +     G+    S++  
Sbjct: 967  VRDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAESEIGV 1026

Query: 465  GVEVIAIL--PNTRV---LNFIPED 484
            G      +  P  +       IPE+
Sbjct: 1027 GSSFFFTIKTPVDKSSTNTEAIPEN 1051


>gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 1016

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/271 (32%), Positives = 148/271 (54%), Gaps = 11/271 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + +     ++  L+ ++   ++  +RAE  N AKS FLA+MSHE+RTP+NAILGF ++++
Sbjct: 501 ALELRNILMLTALQSSQLALEQVAQRAEIANQAKSEFLANMSHEIRTPMNAILGFCDLLQ 560

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               G +     + Y+  I  SG+ LL+LIN+ILDLS+IEAG+++L    ++L  ++ E 
Sbjct: 561 ----GLVTEPRQRSYLELIAASGESLLDLINDILDLSKIEAGKFQLYYEPLNLRQLIAEV 616

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTV 393
             +   RA+EK + +   ID ++   ++ D   +RQ++ N+L NA+KFT  G  ++ +  
Sbjct: 617 QKIFTHRAKEKGLSLISHIDDAVPQGIYFDGIRLRQILFNVLGNAIKFTERGFIQISIRA 676

Query: 394 G-WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             +T          I+I D G GIA+ +   +  +F Q          G GLGL I + +
Sbjct: 677 QVYTQENIKKVWLEIAITDTGIGIAKNQQDDIFEAFVQSEGQSTRKYGGTGLGLAITRRL 736

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               GG  +++S+L  G   I I P   V +
Sbjct: 737 TTLLGGTLVLQSELSHGSSFIFIFPEIEVSD 767


>gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 916

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503


>gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2]
          Length = 1043

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 180/453 (39%), Gaps = 31/453 (6%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLSLGKKVMN-S 96
            R   ++     + A I   F              P W +    +    + +       S
Sbjct: 206 VRERSLIAYVGYICAVILWQFIWGGHIHLLFSGGIPYWLVGHTELIFVIIGISSGFFTVS 265

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY-KSATLLIALSISALS 155
            ++  +       ++V  +A+ +   ++  +       +   +Y      + +   + + 
Sbjct: 266 FLETKKNAKAAHPVIVLLLAVQMVIGVVCFLGVLPSIWKNNLVYGVGLIAICSYIFAGIE 325

Query: 156 NF-----MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203
            F        Y +F        A+     +   +           +   L + L  F  +
Sbjct: 326 AFINRFQPARYFIFAWGMLASGAIIGMLSLIGVLPSNDFTTYCFQVGVFLESGLFSFALM 385

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +   ++     +  + +  +E   +  D  RK A + +  KS+FLA+MSHE+RTP
Sbjct: 386 EKSRSQLEHEVEQATDDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 445

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ILGFS     E          +E +  I+ +  +LL ++N++LD S+IEAG+ +++ 
Sbjct: 446 LNGILGFS----RELTHASLPSDQQEQVRIINTAADNLLTIVNDVLDFSKIEAGKLQINN 501

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              S   ++ E + ++   +  K +E    + P    +  D   ++Q++ NLL NA+KFT
Sbjct: 502 QPFSPNTLLEEMVTIMAKSSHSKKLEFVFDLAPLPEKLIGDVFRIKQILNNLLGNALKFT 561

Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G + + V             I+++D G GI   +   +  +F Q   +I    QG G
Sbjct: 562 PS-GTITLAVKGRPLLHGIHEIEITVEDTGIGINRQDRKKLFNAFSQVDDSINRNYQGTG 620

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ ++    G   ++S  R+G   +  L
Sbjct: 621 LGLVISRELVRLMRGDLTLKSTPRQGSTFVVTL 653


>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 918

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|291615037|ref|YP_003525194.1| integral membrane sensor hybrid histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585149|gb|ADE12807.1| integral membrane sensor hybrid histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 606

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 167/450 (37%), Gaps = 20/450 (4%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKK 92
           I +  + +     P++ +  L +A +        I       W      V+        +
Sbjct: 19  IRSEQIRARLDSYPLMVVSQLALAPLLVMLMWGKISHEVLQAWLAAVYCVHGIEYFFWHR 78

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                  + +   W          I L W    ++        Y  +     + ++   +
Sbjct: 79  HRALTKSVVQNRYWDRMFRRLTAMIALAWGSAGVLMFVPGDLAYQALMICVVMGLSAGAA 138

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
             + F  P ++F+     ++ L  +           L  ML    +F       L ++  
Sbjct: 139 TSNPF-HPPSMFIYLIGTILPLLGRLAWENDTTHWILFVMLGMFCAFVLKSALELIRTFE 197

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +    + E + L+  L   K  ++ +R  AE+ N AKSRFLA+ SH+LR PL A+  FS+
Sbjct: 198 QSQRRRFENEILVGALLERKRDAEASRLAAEQANHAKSRFLATASHDLRQPLQALRLFSD 257

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++                G I +S   L+++ +++LD+SR++AG  E       L D+ 
Sbjct: 258 ALQDTAREKETV----RLAGQIGKSVNALVDMFDDLLDVSRLDAGIVEPRMQHFLLGDLF 313

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPS---------LSSVWADEKGMRQVILNLLSNAVKFT 383
                     AQ K +     +               V +D   + +++ NL+SNA++++
Sbjct: 314 DRLYGDFAPLAQAKGLSFELPVCTGRTCGPQNICDVVVRSDPFLLERMLRNLISNAIRYS 373

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V           + I D G GI    +P +   + Q     +   +G+GLGL 
Sbjct: 374 DSGG-VTVRC-ICMLGKVGLDIADTGIGIRAETLPHIFEEYYQADNPHRDRRKGLGLGLA 431

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I + I      +  + S+   G      +P
Sbjct: 432 IVRRIEQLLECKVRVSSEPGVGSVFSFEVP 461


>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
 gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 918

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 159/350 (45%), Gaps = 27/350 (7%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
              S  LL  + I+ L  + L   V     P+   + T   +    LD  + G +   L 
Sbjct: 173 FMASCLLLGCMGIALLLAYRLMRDV---TIPIRNMVETVDRIRRGQLDSRVEGRMLGELD 229

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247
               +   +    + + +   E    I            ++E+     D  +KRA+E   
Sbjct: 230 M---LKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 286

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+     +T+      T ++Y+  I RS  +LLN+IN+
Sbjct: 287 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLTPTQQDYLQTIERSANNLLNIIND 342

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LD S++EAG+  L     SL + + E +++L   A EK +E+   I   +      D  
Sbjct: 343 VLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQFIGDPL 402

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422
            ++Q+I NLL NA+KFT   G + + +             I IKD G GIAE +   +  
Sbjct: 403 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQEQHQVLLEIQIKDTGIGIAEIQQAQLFQ 461

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     SKL +G      L
Sbjct: 462 AFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWCTL 511


>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 934

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 165/299 (55%), Gaps = 21/299 (7%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIAEL-------EVAKSLSDETRKRA 242
            +    L+        + +   K     Q  +D L +E+       +   +  ++ ++ A
Sbjct: 400 ALWFHELAEMANYANQMLRDKRKAQRKLQQHRDHLESEVAKRTYWLKEKTTQLEQAKEIA 459

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKS FLA+MSHELRTPLNAILGF++++         ++ ++E +  I+RSG++LL
Sbjct: 460 EAANQAKSLFLANMSHELRTPLNAILGFAQIMHR---SQTLSQEHQENVNVINRSGEYLL 516

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           +LIN++LD+S+IEAG+  L E+ I L  ++ E   +  LRA+ K +++  + D ++   +
Sbjct: 517 SLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQLQLDIERDNNVPRYL 576

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG------RVH--VTVGWTSGRGQYISIKDNGPGIA 413
           + D K +RQV++NLLSNA+KFT  GG       +   ++    +       ++D GPGIA
Sbjct: 577 YTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEVILEFQVRDTGPGIA 636

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E E+  +  +F Q +  I S  +G GLGLPI++  +   GG   ++SK+ EG      +
Sbjct: 637 ENEMDKLFEAFTQTATGIASQ-EGTGLGLPISRKFVQLMGGDISVQSKVGEGTTFTFSI 694


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/401 (25%), Positives = 165/401 (41%), Gaps = 19/401 (4%)

Query: 90  GKKVMNSDIKIGEVYVWRIWL---LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
            +            + W        V      +   LL  +      P     +     +
Sbjct: 16  ARWYCGHAWYEEPAWGWIHIFSDIAVWGAYTAIPIVLLYFLRRRKDIPFPAVFWLFVAFI 75

Query: 147 IALSIS-ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            A   +  +   +  + V+     V +A +  +  +       +A +  T L+       
Sbjct: 76  FACGTTHVIEAIIFWWPVYRLSAVVKLATAIVSWGT------VIALLRVTPLAMSLRGPR 129

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L     K      E   L A+LE          + A   +  KS FLA+MSHELRTPL 
Sbjct: 130 QLQDEVHKRTQ---ELQSLNAQLEKEIVARQLAEQAAHAASQTKSEFLANMSHELRTPLT 186

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A++G +EV+  E      ++  ++ +  I + G HLLNLIN+ILDLS+IEAGR E ++ A
Sbjct: 187 AVMGLTEVLNTE----ETDQEKRQLLAMIRQGGDHLLNLINDILDLSKIEAGRIENNKIA 242

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
               +I  E +  L++ A  K+IE+   +D ++ + + A    +RQ++ NL  NAVKFT 
Sbjct: 243 CQPGEIAAEVVDSLRVSAAAKSIELSWTMDDNMPTTIAAAPIRLRQILFNLAGNAVKFTD 302

Query: 385 IGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            G   VH+ +     +    S+ D G GI    +  +   F Q          G GLGL 
Sbjct: 303 HGSVTVHLQIDPLDSQLLRFSVTDTGEGIPPEGLKLLFEPFSQLDGTAARRRDGAGLGLS 362

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           I++ +    GG   + S+  +G      LP   +    P  
Sbjct: 363 ISKRLAETMGGTIEVESQPGQGSTFALRLPLEIMAAEEPTA 403


>gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 601

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 17/355 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATA 196
            I  S  + I      + + ++ Y V      +  V+ +     +    +IS        
Sbjct: 245 AIVVSIAMFIVAVTLFVLHAIVRYLVLQPLLHLRDVSDAITHGDTNQRANISTDDEFREL 304

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              F  +  HL ++  ++ S   E D  + +         E        N  K+ FLA+M
Sbjct: 305 ADAFNRMLRHLTETQTQLQSVNRELDARVDQFAQLNLQLYEA-------NRLKTDFLANM 357

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+I+GFSEV++        +E  + Y  +I +SG+ LL +IN+ILDL+++EA
Sbjct: 358 SHELRTPLNSIIGFSEVLQ---GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEA 414

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ E+  S   L  +V     M+Q  +++KNI +  ++   L   + D   + Q++ NLL
Sbjct: 415 GKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKLGQILNNLL 474

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIAI 431
           SNA+KFT  GG + V V         +S+ D G G+A+ + P +   F Q         +
Sbjct: 475 SNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGL 534

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                G GLGL I + +    GG+   +S+L  G     ILP  R+ +   E+N 
Sbjct: 535 TREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILP-YRLSDHEMEENE 588


>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 918

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 992

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 662

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L  ++ E    LQL+ +
Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
            + +++   +      +  ++  + Q+++NL+SNA+KFT  G   ++  G+   G+  Y 
Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 779

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + +  ++   F +      S EQG GLGL I Q+++ + GG   + S+  
Sbjct: 780 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 835

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 836 KGSTFWFTLP 845


>gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1014

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 629 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 684

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L  ++ E    LQL+ +
Sbjct: 685 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 744

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
            + +++   +      +  ++  + Q+++NL+SNA+KFT  G   ++  G+   G+  Y 
Sbjct: 745 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 801

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + +  ++   F +      S EQG GLGL I Q+++ + GG   + S+  
Sbjct: 802 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 857

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 858 KGSTFWFTLP 867


>gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
 gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
          Length = 992

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 662

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L  ++ E    LQL+ +
Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
            + +++   +      +  ++  + Q+++NL+SNA+KFT  G   ++  G+   G+  Y 
Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 779

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + +  ++   F +      S EQG GLGL I Q+++ + GG   + S+  
Sbjct: 780 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 835

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 836 KGSTFWFTLP 845


>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str.
           8401]
 gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
          Length = 918

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1299

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L    ++   +    +      A++      L +     +  ++ AE+ N+AKS FLA+M
Sbjct: 575 LDLLKHLADQMG-IALTQSQLLAQETRQAQLLALQNEELNVAKQVAEKANMAKSNFLATM 633

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NAI+G S ++   T+ P       +Y+  I  S   LL +IN+ILD S+IE+
Sbjct: 634 SHEIRTPMNAIIGMSGLLLDTTLKP----EQFDYVETIRNSSHTLLTIINDILDFSKIES 689

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G+ EL E    L   V E + +L  +A  K IE+  +++P   + V  D   +RQ++ NL
Sbjct: 690 GKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTLVVGDITRIRQILWNL 749

Query: 376 LSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +SNAVKFT   G + +T+G                  +++D G GI    +  +   F Q
Sbjct: 750 VSNAVKFT-KIGEICITIGAKQKIYKQTDPTRYEFQFAVQDTGIGIERDRLHRLFKPFSQ 808

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              ++     G GLGL I++ +    GG+  + S+  +G      
Sbjct: 809 VDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFT 853


>gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 519

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 6/270 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           + + +      + Q   ++L           ++     +  ++ K+ FL+++SHEL+TPL
Sbjct: 256 WRIIQRKQSEEALQKYANELSE----VNKELEKVNDDLKSLDVMKNEFLSNISHELKTPL 311

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +I G+ E++   ++G L NE  K+ +  + R+ + L  LI  +L +S +E+   +    
Sbjct: 312 VSIKGYVELVFDGSLGTL-NEQQKKAVNIVLRNSERLRRLIESLLFISGLESRAIQYHIE 370

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + + +I+   +  + L+ ++K + I   +  +L  +  D+  +  ++ NL+ NA+KFT 
Sbjct: 371 KVRIAEIIDNVVNDVNLQIEDKGLLIENNVPENLPLINGDKARLSDMLTNLVDNAIKFTP 430

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GR+ +   +      +I +KD G GI +  IP +   F Q   +IK    G G+GL I
Sbjct: 431 SEGRIILNA-YEEEDDLHIEVKDTGIGIPKELIPNLFQRFYQVDASIKRRYGGTGVGLYI 489

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++I+  H G   I S+  +G  V   LP 
Sbjct: 490 CKNIVEAHKGNIWIESEEEKGTTVHIRLPR 519


>gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
 gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
          Length = 833

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +  + +    ++L    E  +   EL+       + R+ AE  N AKSRFLA+MSHE+RT
Sbjct: 254 LERYRYHLEEQVLQRTQELHETNEELQKTVDKLAQARQAAETANHAKSRFLANMSHEIRT 313

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+  ++G +E++    +        +E    IH SG+ LL ++N+ILD S+IEAGR  + 
Sbjct: 314 PMIGVIGVAELLSGTPLSDH----QRELAHMIHSSGESLLKVLNDILDFSKIEAGRLVVE 369

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
               +L+D+V E + ++   AQ+K +E+  +I P     +  D   +RQ++ NLL NAVK
Sbjct: 370 RVPFNLVDVVEEPLSLIAKNAQDKKVELICRIQPGTPVSLLGDPARLRQIVFNLLGNAVK 429

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT+  G + V +G           ++ ++D G GI       +  +F Q   +      G
Sbjct: 430 FTSE-GEISVRIGCRDENCASASIFLEVRDTGIGIDREAQQAIFDAFSQADSSTTRHYGG 488

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I + ++    G   + S+L +G      +
Sbjct: 489 TGLGLAIVRQLLDLMRGHIHLESELGQGSVFTCTI 523


>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
 gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
          Length = 921

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 156/349 (44%), Gaps = 27/349 (7%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
              +  LL  + ++ L  + L   V     P+   + T   +    LD  + G     L 
Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDV---TIPIRNMVETVDRIRRGQLDSRVEG---HMLG 228

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247
               +   +    + + +   E    I            ++E+     D  +KRA+E   
Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+     +T+      T K+Y+  I RS  +LLN+IN+
Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTSTQKDYLQTIERSANNLLNIIND 344

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LD S++EAG+  L     SL + + E I++L   A EK +E+   I   +      D  
Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422
            ++Q+I NLL NA+KFT   G + + +             I IKD G GIAE +   +  
Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRRQESLQVLLEIQIKDTGIGIAEAQQTQLFQ 463

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q ++   GG     SK  +G      
Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCT 512


>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
 gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
          Length = 925

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   S R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSR 251
                   L     ++     E ++    LE+     D+ RK         E+ +  KS 
Sbjct: 427 LLEASEEELRVQQEELTQTNNELEEKAKLLELKNEDLDKARKNITDKINEVEQASKYKSE 486

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A+MSHELRTPLN+IL  +++++      LN +  K Y   IH +G  LL+LINE+LDL
Sbjct: 487 FMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIK-YATVIHSAGSDLLHLINELLDL 545

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           ++IE+G+ +L E  I +  + R    + ++ A+EK+I     IDP    +   DE  + Q
Sbjct: 546 AKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPSTFLCDEYRLEQ 605

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ NLLSNA KFT  GG++ +     +    +I ++D+G GIA  +   +  +F Q   +
Sbjct: 606 VLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFI-VQDDGIGIAPEKQKLIFEAFKQEDGS 664

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I + +    GG+  + S+  +G     ILP
Sbjct: 665 TSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILP 707


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A+      ++ AE    AKS FLA+MSHE+RTP+NAI+G S +     +    +
Sbjct: 1458 ITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTGL----D 1513

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++YI  I  + + LL LIN+ILD S++EAG+ E+     +L D + +   ++ ++ +
Sbjct: 1514 RKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKTR 1573

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
            EK +E+       +   +  D   + Q+++NL +NAVKFT   G V V++        Q 
Sbjct: 1574 EKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEK-GEVVVSIEKVCVDDEQV 1632

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++KD G G+ + ++  +  SF Q   +      G GLGL I++ +    GG   + 
Sbjct: 1633 TLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISVE 1692

Query: 460  SKLREGVEVIAI 471
            S   +G   +  
Sbjct: 1693 STFGKGSSFVFT 1704


>gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1052

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 10/266 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  +L ++LE    + +   + A++ N AKS FL+ MSH++RTP+N I G +E+     
Sbjct: 523 TELRELQSKLEERTVMLNTALEEAKQANEAKSDFLSRMSHDIRTPMNVIAGMTEIAGSHV 582

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   E  K+ +  I  S  HLL LIN++LD+SRIE G + ++   +SL  ++RE I++
Sbjct: 583 YEP---ERVKDCLQKIRLSSHHLLGLINDVLDMSRIENGNFHINMVPVSLPAVLREVIMI 639

Query: 339 ----LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               ++ +AQ  ++ +    D      ++D   +RQ++LNLLSNA KFT + GR+   V 
Sbjct: 640 TLAGIREKAQIFDVHLVNLEDE---QFYSDALRLRQILLNLLSNACKFTPVSGRIVFEVE 696

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    ++ D G G++   +  +  +F +   +     +G GLG+ I + ++    G
Sbjct: 697 QKDRTALIFTVSDTGAGMSPEFLEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDMMEG 756

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480
              + S   +G      LP   V   
Sbjct: 757 TITVSSCPGKGTTFQVTLPAAVVQEE 782


>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 944

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 105/439 (23%), Positives = 173/439 (39%), Gaps = 23/439 (5%)

Query: 40  LHVESLFRVSPILPLFVLLVA--NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
             +++L        L +L      +     Q    P+W+ +   V A    L    +   
Sbjct: 3   AQLDTLRAHFGKFLLLILWAHVPALVLIALQTGHSPLWTALAGMVLAGCYHLS--WLRHG 60

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157
                      +L    +       L  L         ++  +    L IA         
Sbjct: 61  AAPVT-----RYLSAVALMGEPAIMLFLLTGHTWQMDMHMYFFAMLALTIAWCDWRAIVT 115

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
                       + +  S       ++  + L   +    +        L   + K++  
Sbjct: 116 GAVAVSLHHLVLLYLLPSAVFSQDGNIGRVILHAGIVIFQTIV------LVWISHKLVES 169

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                 +  E+ +      +  + AEE N AKS FLASMSHE+RTP+NAILGF  +I   
Sbjct: 170 FDRIGRMSEEILIKNEALTQRTREAEEANRAKSLFLASMSHEIRTPMNAILGFCHLIART 229

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            + P      K+++  I+ +G  LL LIN+ILD S+ EAG+  L      +   +   I 
Sbjct: 230 DLSP----KQKDHVSKINDAGVSLLRLINDILDFSKNEAGKLTLEARPFDVRAAITNQIN 285

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTV 393
           ++ + A  K +++  +I P++   +  DE    QV+LNLLSNAVKFT  G  +    V  
Sbjct: 286 LVNIDADNKRVKLETRISPAVPRKIIGDELRFNQVVLNLLSNAVKFTENGTVIVRADVAS 345

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    +S++D+G G+ E +   +  SF Q   +      G GLGL I + I+   G
Sbjct: 346 SQDRDVVLELSVRDSGIGMDEQQQAKLFKSFSQADSSTTRQFGGTGLGLAICRQIVEQMG 405

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G   + SK+ EG      +
Sbjct: 406 GNIRVESKIGEGSTFTFRI 424


>gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 903

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L ++    L+     +       P+  +    + +     +D          +       
Sbjct: 289 LFSIIGIFLACITAYFLASRIMIPINTITEVFKKLAKGEDVDAIPGITRHNEIGQLANAA 348

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               + N +  +  A+   L +E E+  +   E++ +AE+  ++KS FLA+MSHE+RTP+
Sbjct: 349 DVFHEKNKQTSALLAQAQRLNSEQEMLNAELVESKHKAEQATVSKSMFLANMSHEIRTPM 408

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+G  +V+    + P    T ++++  +  S Q L++LIN+ILD S++EAG+ ++ + 
Sbjct: 409 NGIIGLLDVVMKSDLTP----TQRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQV 464

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             SL  +    +  +  RAQEKN+ +    DP++  ++  D   + QV+LNL SNAVKFT
Sbjct: 465 EFSLNSVFANLLTNISARAQEKNLNVRFICDPNIPPTLIGDPLRISQVLLNLTSNAVKFT 524

Query: 384 AIGGRVHVTVGWT---SGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
              G + +++      +     +   +KD G G+++ ++  V  SF Q          G 
Sbjct: 525 -RNGSITISITHDVIPNSDKVLLKARVKDTGIGMSKEQLGKVFESFTQADGTTSRDFGGT 583

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL I + ++   GG    +S+L  G       
Sbjct: 584 GLGLTIVKQLVHLMGGNVTAQSELNVGSTFEVTF 617


>gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 610

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 190/438 (43%), Gaps = 20/438 (4%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              +    L    VA+   +             T     +      +++  ++       
Sbjct: 161 TNPALRTSLLAFGVASATLYAAVLAFAADTLARTSVTLLSMEEERYRLLARNMSDVISRH 220

Query: 106 WRIWLLV-GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            R   ++    A+            G    E + +      L ALS +A  +        
Sbjct: 221 RRNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGS-------- 272

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--- 221
                   A S +  +         AG  +    +       L ++ V       E    
Sbjct: 273 -------EASSVEFRLRRDAPGEGRAGQQSVDFIWVEMRCRPLDRAGVTCAGTDQEVVAV 325

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              + + ++ +   +  R  AE  + AK+RFLA+MSHELRTPLNAI+GFSE++  E +  
Sbjct: 326 MRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLV 385

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           LN    +EY   I+ SGQHLL+++N ILD+S++E+G +EL+    +    +  C  +L L
Sbjct: 386 LNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLAL 445

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           RA+E  +++       L  +  D +  +Q+++NL+SNA+KFT  GGRV V+ G   G   
Sbjct: 446 RARENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAG-VDGARL 504

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + I D G GIA  ++  +   F Q     +   +G GLGL I +S++  HGG+  I SK
Sbjct: 505 LLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESK 564

Query: 462 LREGVEVIAILPNTRVLN 479
           L EG  V   LP   V  
Sbjct: 565 LDEGTTVTIALPINCVAE 582


>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 897

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 142/262 (54%), Gaps = 7/262 (2%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                     I + +  +    + ++ AE  + AKS FLA MSHELRTPLNAILGF++++
Sbjct: 388 REYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLM 447

Query: 275 ELETMGPLNNE--TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           E E     N     +KE++  I RSG+HLL LIN++L++S+IEAGR  L+ +  +LI ++
Sbjct: 448 ERELYHSPNIPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLL 507

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-H 390
                ML+L A  K + +   ID ++ + ++ADE+ +RQ + NLL NA+KFT  GG +  
Sbjct: 508 NSLREMLELPASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNLLGNAIKFTLQGGVILR 567

Query: 391 VTVGW--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +G            ++D GPGI   E+  +   F Q      S  QG GLGL I Q  
Sbjct: 568 VKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRNSQ-QGTGLGLSITQKF 626

Query: 449 MANHGGQFLIRSKLREGVEVIA 470
           +   GG+  + S+  +G     
Sbjct: 627 IGLMGGEIQVSSERGKGTIFRF 648


>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
 gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
          Length = 809

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 140 YKSATLLIALSISALSN----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
           +  ATL +   +S + N     +L    F +    +++L    I+   V+   +      
Sbjct: 125 FPLATLTVQSDLSMILNDFEERVLLLLAFEAVKIFLLSLVCLTIVYRLVVKRLMTMSSQI 184

Query: 196 AL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
                      F   T   +K  +  L      +  +  +       ++ +  AE  N  
Sbjct: 185 NQQQVEDNKPRFITPTDSTYKDEISTLESSY--NQSVERIRQQYQELEKAKDVAEVANRN 242

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N I+G S ++    M     +  KEY+  ++ S   LL+LIN+I
Sbjct: 243 KSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSLTLLDLINDI 298

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAGR EL +  + ++ I  +     +++A++K +     IDP +   V  D   
Sbjct: 299 LDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLAIDPKIPTMVIGDGTQ 358

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVL 421
           +RQV+ NL+ NA+KFT   G V +++                 + D+G GIAE +  +V 
Sbjct: 359 LRQVLNNLVGNAIKFT-EHGHVTLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQSVF 417

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             F Q   +      G GLGL I   I+   G +  + S + +G      
Sbjct: 418 DKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSVVGKGSTFYFT 467


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 157/411 (38%), Gaps = 20/411 (4%)

Query: 69  NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
             +  + ++      A          +   +       R  LL   ++       L ++ 
Sbjct: 417 GTVLEIRTVPLAGGGAVRTYTDITARHGAEQARRESEARYRLLADNVSD------LIVLG 470

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLD 186
                  Y++    A L   +  +          +     P  +    +T   +S     
Sbjct: 471 HADGRRSYISPAVHAMLGYTVEEA------HRIGMREWLHPEDLGRVFATTTSLSPERPT 524

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            S+   L      + +      +               + E    +   ++ +  AE   
Sbjct: 525 ASVVYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQERRLEQAKVAAEAGA 584

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+ FLA+MSHELRTPL  +LG  +++         +   +  IG    +G+ LL ++N
Sbjct: 585 RVKAEFLANMSHELRTPLTGMLGVHDLLA---GDTSLSAAQRHLIGLAQEAGRSLLAIVN 641

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADE 365
           +ILD S+IEAG+  +     SL  +V  C  ++   A+ K + +  +I+  +   +  D 
Sbjct: 642 DILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVAEIEGDVPDWYVGDP 701

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSF 424
             +RQ++LNL SNAVKFT   G + + V   +G     + + D G GI   ++P +   F
Sbjct: 702 TRLRQILLNLASNAVKFTPQ-GEIALRVRSAAGTGRVRVEVTDTGIGIPADKLPLLFERF 760

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +      G GLGL I + ++   GG   + S   +G      LP  
Sbjct: 761 SQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIPGQGSTFWFELPLA 811


>gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri VA-6]
          Length = 918

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 581

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK+ EE    +  F+A++SHEL+TP+ +I GF+E +    M     ET  +++  I + 
Sbjct: 348 ERKQLEE---MRKDFVANVSHELKTPITSIKGFTETLLDGAMNER--ETLLQFLSIILKE 402

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI ++LDLS+IE   + L+    ++ +I+ E  ++L+ +A+EK I +  +    
Sbjct: 403 SSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPDK 462

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            +    D   ++Q+ LNL++NA+ +T   G V ++          + ++D G GI + EI
Sbjct: 463 PAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLED-AVQVKVRDTGIGIKQSEI 521

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           P +   F +          G GLGL I + ++  H G+  + S+  +G E    L
Sbjct: 522 PRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRL 576


>gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI]
 gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 621

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 15/294 (5%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   +     ++L    +    I E +  +    ++ ++  E +  K+ FL+++SHEL
Sbjct: 93  ARVAKLMMDLFEELLETNRKLKMEITERKKVEEALRQSNEKLTELDELKTDFLSTVSHEL 152

Query: 261 RTPLNAILGFSEV-------------IELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           RTPL ++LGF+++             I  +       +  K+ +  I   G+ L  LIN+
Sbjct: 153 RTPLTSVLGFAKITQKRLEEHIFPLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELIND 212

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LD++++EAG+ E     +S+ D++           ++K +  F++I+  L  +  D   
Sbjct: 213 VLDIAKLEAGKIEWKMEKLSMADVIERATAASSYLFEQKGLAFFKEIEEGLPDLTGDRDR 272

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QVI+NL+SNAVKFT   G V        G    +S+ D G GIA  +   +   F Q 
Sbjct: 273 LIQVIINLISNAVKFTNE-GSVTCRARMI-GDEITVSVIDTGIGIAREDHERIFEKFKQA 330

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              +    +G GLGL I + I+ +HGG+  + S+  +G      LP +R  + +
Sbjct: 331 GETLTDKPKGTGLGLAICKQIVEHHGGRIWVESEPGKGSSFSFALPVSRQADVL 384


>gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 758

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 152/306 (49%), Gaps = 9/306 (2%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +  +    +L   L F  ++ YH+ + + + L+  ++   +      AK      +++A
Sbjct: 342 TLRYMLGLVILGVLLIFTIFVAYHMKRRDNQRLAAHSKDLQI------AKDRLAIAKRKA 395

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ + AKS FL+ MSHELRTPL AI+G++E++  E     ++   K+ +  +  +G+ LL
Sbjct: 396 EDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLDSDDRHVKD-LERVIHNGERLL 454

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LIN +LD+++IE+G  +L  + + L  +V E    +    ++  I++ Q++D   S   
Sbjct: 455 RLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDDGESLPK 514

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD + +  +++NLL NA KF    G V +     + +  YIS+ D G G++  +   +  
Sbjct: 515 ADPEKLLHILINLLGNASKFAPK-GVVSIKAYHRAEK-IYISVADTGIGMSPEQQQHIFD 572

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q         QG GLGL I + +    GG   + S+L +G   I  LP   V     
Sbjct: 573 PFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKGSTFIVELPLPIVPPAPK 632

Query: 483 EDNHES 488
           +   E+
Sbjct: 633 DQEPEA 638


>gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 883

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  ++   E +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 643 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 698

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  +  +   LL LI++ILDLS+IEAG ++ +E  + +  +  + ++ ++++A+
Sbjct: 699 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 758

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+EI          + +D   + QVI N ++NA+KFT   G + V             
Sbjct: 759 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 816

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI       +   F +      S   G GLGL I +SI+   GG+  + S+  +
Sbjct: 817 IADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 872

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 873 GSCFWFTLPIK 883


>gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
 gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
          Length = 744

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 112/274 (40%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL--EVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           +     + +  L    +K +L A+   E+ +  +DE + RAE+ N AKS FLA++SHELR
Sbjct: 456 SERGHMATIADLRQSRQKLELQAQQLVELTEKYADE-KTRAEDANQAKSEFLANISHELR 514

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+GFSE+++    G L ++ YKEY  DIH SG +LLN+IN+ILD+S+IEAGR EL
Sbjct: 515 TPLNAIIGFSEIMDQGMFGDLGSDKYKEYCKDIHSSGNYLLNVINDILDMSKIEAGRIEL 574

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S   + +  IV++   ++   A EKNI++  +  P +  + AD + ++Q++LNLL+N+VK
Sbjct: 575 SVEDVQIQQIVQDAARIISATAAEKNIKVVNENLPHM-HLQADRRAVKQILLNLLANSVK 633

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V V+     G    + I DNG GIA+ +I  +   F Q         +G GLG
Sbjct: 634 FTPENGEVRVSARKV-GAFAELKITDNGIGIAKKDIDRLAKPFVQVENQFTKTHKGSGLG 692

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L IA+S+   HGG   I S++ +G EV   LP  
Sbjct: 693 LAIARSLSELHGGYMEIDSEVGKGTEVTIKLPLK 726


>gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 669

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 143/291 (49%), Gaps = 8/291 (2%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           V      G+    L           + +V  +    E   +      A+    E ++ A 
Sbjct: 142 VPMWDSCGVTVGYLGLDASAEKQWTREDVTFVRLVGELIAIAESRYEAEKELKEAKEAAV 201

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N AKS FLA+MSHELRTPLNAILGF+ +I         +  Y++Y+  ++RSG+HLL 
Sbjct: 202 KANKAKSEFLANMSHELRTPLNAILGFTRLISR---DSSISSEYRQYLEIVNRSGEHLLE 258

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           LIN+IL++S+IEAGR   + S   L  ++     ML+ +AQ K + +       L   + 
Sbjct: 259 LINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLIFDRSSDLPQYIC 318

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            DE  +RQV++NLL N +KFT  GG   RV +       +     I+D G GIA  EI  
Sbjct: 319 TDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDDQRLLWEIEDTGLGIAPEEIYK 378

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           +   F Q     KS  QG GLGLPI++  +   GG   + S L +G     
Sbjct: 379 LFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILGQGSIFSF 428


>gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 620

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 4/258 (1%)

Query: 218 QAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            AEK  +   ELE      +E     ++ +  KS  +A +SHE+RTPL +I G+ E++  
Sbjct: 362 MAEKIAISNKELEKRALELEEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLD 421

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           E +G +NN + ++ +     +   L  LI+ +LDLS++  G  E+    I++   + E I
Sbjct: 422 EAVGKINN-SQRKCLTTARENVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVI 480

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L+  + EKNI I  +ID     + AD+  M+QV +NL+ NA+KF+     + +     
Sbjct: 481 DDLKPISAEKNINITLEIDD--IIINADKDRMKQVFINLIENAIKFSPENEIIEIKGKEE 538

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I++KDNG GI + ++  V   F Q  ++ K   +G GLGL + +SI+  HGG  
Sbjct: 539 YHGDVSITVKDNGEGIPKDKLEKVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSI 598

Query: 457 LIRSKLREGVEVIAILPN 474
            ++S++ +G     +LP 
Sbjct: 599 WVKSEIGKGCTFYIVLPK 616


>gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 853

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +K  L   +        +  + AE  N AKS FLA+MSHELRTPL  ++G S  + 
Sbjct: 445 ELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSEFLATMSHELRTPLTCVIGISSTLL 504

Query: 276 LETMG-----PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             + G      +  +  ++Y+  IH SG+HLL LIN+ILDLS++EAG+  L  S  SL  
Sbjct: 505 QWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEFSLSK 564

Query: 331 IVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           I  E +   + +A++  +++  +   +P L    AD++ ++Q++ NLLSN +KFT  GG 
Sbjct: 565 ISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGS 624

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + V           ++D G GI++ + P +   F Q +      + G GLGL + + +
Sbjct: 625 VRLKVMRYK-NTAIFQVEDTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQL 683

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  H G   + S +  G      LP  ++ +
Sbjct: 684 VELHNGIIEVESTVNVGSTFTVKLPAQQLKS 714


>gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1]
          Length = 376

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 94  RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 152

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 153 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 212

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 213 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 271

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 272 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 330

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 331 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 374


>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1319

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 10/351 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   +   +YLT+      +  L++  +           S   V   +  +   +    +
Sbjct: 486 MYCLSPHGKYLTVNAKFCEMFGLTMQEIVGRTPNEVFNASTGQVFTTVHQELRQTKGSRN 545

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L+    ++ +    +    F +    +S        + E +  ++   E ++ A+  +
Sbjct: 546 YELSLCDGSSQNREMLVYEASFSNGDGEISGIVGILLDLTERKQFENELREAKELADAMS 605

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  FLA+MSHE+RTP+NAILG + +     +    + + K+Y+  I+ S ++LL +IN
Sbjct: 606 QAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----DPSQKKYLTRINESAKNLLGIIN 661

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S+IEAG+  +     SL ++    + ++  +A EK +E    IDP +   +  D 
Sbjct: 662 DILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKVPIGLVGDP 721

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             + QV++NL SN+VKFT   G + V+               S+KD G GIA+ +I  + 
Sbjct: 722 LRLGQVLVNLCSNSVKFTEK-GEIVVSALVEQLDENRATIRFSVKDTGIGIAKEKIQHLF 780

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I++ ++   GG+ ++ S    G      +
Sbjct: 781 RAFSQADSSITRQFGGTGLGLSISKQLVELMGGELVVSSSEGTGSVFSFTI 831


>gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1977

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 37/319 (11%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
              L   ++    I         ++     E+     +L        E+ ++       K 
Sbjct: 1512 AQLLQQIANQLAIAIQQANLFEQLQQELTERQQTQQQLTERNQQLAESNQKLAHATRLKD 1571

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA+MSHELRTPLNAILG +E +     G +N    K+ +  I RS  HLL LIN+ILD
Sbjct: 1572 EFLANMSHELRTPLNAILGMTEGLTDVIFGSINT-QQKKALQTIDRSAHHLLELINDILD 1630

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            +++IE+G+ EL+ +A S++ + +  +  ++ +A  KNI +  +I P +  VW DE+ +RQ
Sbjct: 1631 VAKIESGQIELNCAATSVLLLCQSSLSFIKQQALRKNIHLEVQIPPHVPDVWVDERRIRQ 1690

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGW----------------------------------- 395
            V++NLL+NAVKFT  GG V ++V                                     
Sbjct: 1691 VLINLLNNAVKFTPEGGSVTLSVQRQLIVQDPPPLQGITKVRVHRTPIEQQLGIQLQTSQ 1750

Query: 396  -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    I++ D G GI    +  +   F Q   A+     G GLGL + + I+  HGG
Sbjct: 1751 FEVHNYLRIAVTDTGIGIPSHYLHKLFQPFVQIDSALNRQYTGTGLGLALVKRIVELHGG 1810

Query: 455  QFLIRSKLREGVEVIAILP 473
            +  + S    G      LP
Sbjct: 1811 EVGVTSTEGAGSCFTIDLP 1829


>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736]
 gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
          Length = 918

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    I    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINAMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  +F 
Sbjct: 410 QQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 764

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 13/286 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTP 263
           + +   +    QA  + L AE+EV +    E    ++RAE  + AK+ FLA MSHE+RTP
Sbjct: 343 MAQLAERTRETQATNEALKAEMEVRRETERELALAKERAEAADRAKTDFLAGMSHEIRTP 402

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N ILG ++++             ++YI     SG  LL +IN++LDLS+IEAG   L  
Sbjct: 403 MNTILGMADLMLET----DPTPVQRQYIEVFQSSGAMLLGIINDVLDLSKIEAGEVRLET 458

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
             + + D +     ++  RA +K +    +           D   +RQV++NL+ N +KF
Sbjct: 459 VPVDMADFLNRTREIVAGRAAQKGLAFRIEQADHAPRRFLGDPVRLRQVLVNLIDNGIKF 518

Query: 383 TAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           T   G V + VG  +        ++ D G GIA      +   F Q   +      G GL
Sbjct: 519 T-ESGTVRLAVGQAADPPGRLTFAVTDTGIGIAPESQEQIFQRFTQADASTTRKYGGTGL 577

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPED 484
           GL I++ ++   GG+  + S   +G        LP        P  
Sbjct: 578 GLAISRRLVELMGGEIRLESAPGQGSTFSFTVDLPEANGAEADPAP 623


>gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 671

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 145/291 (49%), Gaps = 8/291 (2%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           V      G+    L           + +V  +    E   +      A+    E ++ A 
Sbjct: 144 VPMWDSCGVTVGYLGLDASAEKQWTREDVTFVRLVGELIAIAQSRYEAEKELKEAKEAAV 203

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N AKS FLA+MSHELRTPLNAILGF+ +I         +  Y++Y+  ++RSG+HLL 
Sbjct: 204 KANKAKSEFLANMSHELRTPLNAILGFTRLISR---DSSISSEYRQYLEIVNRSGEHLLE 260

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           LIN+IL++S+IEAGR   + S   L  ++     ML+ +AQ K + +       L   + 
Sbjct: 261 LINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLIFDRSSDLPQYIC 320

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPT 419
            DE  +RQV++NLL N +KFT  GG  + V +G      Q +   I+D G GIA  EI  
Sbjct: 321 TDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDYQRLLWEIEDTGLGIAPEEIYK 380

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           +   F Q     KS  QG GLGLPI++  +   GG   + S L +G     
Sbjct: 381 LFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILGQGSIFSF 430


>gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187]
 gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 908

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 141/278 (50%), Gaps = 9/278 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +    I    ++  + + ++E+     D  +KRA+E    KS FLA+MSHELRTPLN +
Sbjct: 250 NEMQQSIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTPLNGV 309

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GF+  +    +        ++Y+  I  S ++LL++IN+ILD S++EAG+  L     +
Sbjct: 310 IGFTRQLFKTQLSLH----QRDYLSTIEHSAKNLLSIINDILDFSKLEAGKLTLENIPFN 365

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           + +++ + + +L   A +K +E+   +   +   V  D   ++Q+I N++ NA+KFT  G
Sbjct: 366 IREMINDTVTLLAPSAHDKKLELSLLVSQPIPDLVAGDPLRLQQIITNIVGNAIKFTEQG 425

Query: 387 -GRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              +HV+   +  +        I+D G G+ + ++  +   F QG  +I     G GLGL
Sbjct: 426 MVNIHVSTTPSIDQQKVLLRFRIRDTGIGMDDEQLMRLFQPFIQGDSSISRRYGGTGLGL 485

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            I+Q ++    G   + S+  +G E    +P   V   
Sbjct: 486 VISQKLIEQMDGSMQVHSEPNQGSEFTITMPLELVSEE 523


>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 822

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 12/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R  AE+ N  KSRFLASMSHE+RTPLNAI+G +++     +     
Sbjct: 299 ITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLTLRSELST--- 355

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +  +  S   LL LIN+ILDLS++EA    L ES  SL + +R+ +  ++ +A+
Sbjct: 356 -KQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRDVVRSMEQQAR 414

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D  +   V  D+  ++Q++ NL+ N++KFT  GG V V V     R    
Sbjct: 415 DKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGG-VFVQVSKLEDRKDSD 473

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                +S++D G GI + +   V  SF Q   +      G GLGL I++ ++   GG+  
Sbjct: 474 EAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRELVEMMGGRIG 533

Query: 458 IRSKLREGVEVIAI 471
           ++S    G      
Sbjct: 534 VKSSEGFGSVFSFH 547


>gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 882

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  ++   E +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 642 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 697

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  +  +   LL LI++ILDLS+IEAG ++ +E  + +  +  + ++ ++++A+
Sbjct: 698 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 757

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+EI          + +D   + QVI N ++NA+KFT   G + V             
Sbjct: 758 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 815

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI       +   F +      S   G GLGL I +SI+   GG+  + S+  +
Sbjct: 816 IADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 871

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 872 GSCFWFTLPIK 882


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 1040

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 12/273 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I  ++                L      AK L+++    A+E + AKS FLA++SHE+RT
Sbjct: 474 IVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQ----AQEASKAKSEFLANISHEIRT 529

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G + ++    + P        Y G I  S Q LL+LIN+ILD+S+IEAG+  L 
Sbjct: 530 PMNGVIGMTGLLLETDLTP----QQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTLE 585

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                L +++ +      ++A++KN+E    I+P +   +  D   +RQ+++N+  NAVK
Sbjct: 586 ILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAVK 645

Query: 382 FTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT+ G   ++VT+             I+D G GIA+ +I T+   F Q   +      G 
Sbjct: 646 FTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGT 705

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL IA+ ++    G   + S + +G      
Sbjct: 706 GLGLSIAKDLVELMQGSIGVESTVNQGSLFWFT 738


>gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium]
          Length = 595

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 214/476 (44%), Gaps = 6/476 (1%)

Query: 4   SRKNKEKDVGLLI---SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           S ++  + V + +   S   + +      +     ++     + L    P+  L   +VA
Sbjct: 116 SGRHVNRGVPVSVPWESTLAEPMRRALRGESGTVIDLDYRAAKVLAAFEPVRRLNAGVVA 175

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
            I     + P      +  +++               + + E       +   +      
Sbjct: 176 KIDLAEIRRPFLRAAGVCFVSLLLMIAIGASLFRRISVPLIEGEKA---MGELRKLHQSI 232

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
                ++           +      +   S+  +                  A     ++
Sbjct: 233 EQSPLMIFITDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLL 292

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           S       +        SF+  I     ++   +++      + I + + A+  +   R+
Sbjct: 293 SGRQFKAEIKDRRKDGSSFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAARE 352

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  N AK+  LA+MSHELRTPLNAI+GFSE ++L+  GPL +  Y+EY  DI+ SGQH
Sbjct: 353 QAEIANRAKTELLANMSHELRTPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQH 412

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN+ILD+S IEAG+  L E  +++++I    + +++ RA++ ++ +F +    L  
Sbjct: 413 LLKLINDILDVSAIEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLEASDGLPP 472

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD + ++Q++LNLLSNAVKFT  GGRV +  G       ++++ D G G+ E E+   
Sbjct: 473 LLADGRRIKQILLNLLSNAVKFTPEGGRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLA 532

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +T FGQ    +    +G GLGLP+ + ++  HGG F + SK   G    AI P +R
Sbjct: 533 MTEFGQVDGGLDRRHEGTGLGLPLTKGLVEIHGGIFSVESKKGHGTTASAIFPASR 588


>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
 gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
          Length = 914

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 169/363 (46%), Gaps = 28/363 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L++ L +S    + L   V     P+   +S    +    LD+ + G L   L
Sbjct: 171 IISAGVVLVLGLILSCFFAYRLLQDVE---MPIKQMISMIDRIRRGHLDVRIEGKLLGEL 227

Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                   +    ++ +  +    I    ++  + + +LE+     D  +K A+E    K
Sbjct: 228 DTLKNGINAMAISLSEYHLEMQQSIDQATSDLRETLEQLEIQNVELDIAKKNAQEAARVK 287

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+  +    +      + ++Y+  I +S  +LL +IN+IL
Sbjct: 288 SEFLANMSHELRTPLNGVIGFTRQMLKTQLSS----SQQDYLQTIEKSANNLLTIINDIL 343

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L        D + E + +L   A EK +E+  +IDP + + V  D   +
Sbjct: 344 DFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGVIGDPLRI 403

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSF 424
           +QV+ NL+ NA KFT   G ++V+V     R + +     I+D G GI+E +   +  +F
Sbjct: 404 QQVLTNLIGNATKFTER-GHINVSVELKQQRDERLELQFVIRDTGIGISERQQSQLFQAF 462

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRV 477
            Q   +I     G GLGL I Q ++   GG     S+L +G             LP  + 
Sbjct: 463 RQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFTMTLIKTDLPLVQP 522

Query: 478 LNF 480
           ++ 
Sbjct: 523 IDA 525


>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
 gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
          Length = 2241

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 13/264 (4%)

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            L   +       ++ R  A + N +KS FLA+MSHE+RTP+N ++G S+++    +    
Sbjct: 1470 LENRITERTRELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTNLDN-- 1527

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                K Y      S   LL +IN+ILD S+IE G+  L E+  +L  +V+    + +LRA
Sbjct: 1528 --KQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRA 1585

Query: 344  QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSG 398
              K++E+   I P++  ++  D   + Q++LNL SNAVKFT   G V + V         
Sbjct: 1586 HTKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVKFT-KSGHVIIRVQSLNEVEID 1644

Query: 399  RGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   I ++D G GI+E +   +  SF Q + +I     G GLGL I + ++    GQ
Sbjct: 1645 DMHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQ 1704

Query: 456  FLIRSKLREGVEVIAILPNTRVLN 479
              +RS+   G      +   R   
Sbjct: 1705 IQVRSQPNIGSTFSLKINLERAEE 1728


>gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 622

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 18/337 (5%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML--------ATALSFFTYI 203
           + L +  L  A+       ++          H+ D+S A                 F  +
Sbjct: 219 AILISAALVTAILAMVGSYIIVRYVIVKPVQHLRDVSDAIGAGNLSIRANIHTGDEFEEL 278

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           ++   +    +++ Q E  D+ A+L+       +      E N  KS FLA+MSHELRTP
Sbjct: 279 SHAFNRMLHNLMAYQQELRDVNADLDRKVDELAQANLALYEMNRLKSDFLATMSHELRTP 338

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+ILGFSEV+         +E ++ +  +I  SG+ LL +IN+ILDL++IE+G+ E+  
Sbjct: 339 LNSILGFSEVLA---GSDQLSEKHRRFANNIMTSGRMLLTMINDILDLAKIESGKMEVRI 395

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              S  D+      +++   + KNI++   ID  L  +  D   +++++ NLLSNAVKFT
Sbjct: 396 ENCSARDLCESLAAVMRDAFEAKNIDLKCVIDDQLPLIRQDPGKVKRIVSNLLSNAVKFT 455

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------SIAIKSAEQG 437
             GGRV + V +  GR   I ++D G GIA  +   +   F Q          +    QG
Sbjct: 456 PEGGRVELRV-FAEGRFLVIQVEDTGIGIAPEDQEAIFEKFRQLAQPQRDDAVLTREHQG 514

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL I + +     G   + S+   G      LP 
Sbjct: 515 TGLGLSIVRELCRLLEGDIKLVSQPGLGSIFTVRLPL 551


>gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
 gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
          Length = 928

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    E +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 688 ITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVET----EDP 743

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY   +  + + LL LI++ILDLS+IEAG ++       +  +  + +  +QLR +
Sbjct: 744 EEKLEYAKMVEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVK 803

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       + +D   + QV+ N ++NA+KFT   G + +       +   + 
Sbjct: 804 -PGVELIFESTLPQCVIVSDPNRLHQVVSNFINNAIKFTTT-GSIRIGYDKPDDKHLRVY 861

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GIA      +   F +      S  QG GLGL I++SI+   GG   + S+L +
Sbjct: 862 VTDTGIGIAPEACRKIFDRFIKL----NSFVQGTGLGLSISKSIIEQLGGTIGVNSELGK 917

Query: 465 GVEVIAILPNT 475
           G     ILP  
Sbjct: 918 GSTFWFILPLE 928


>gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1350

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             L +      S        ++E +      ++ R  AE+ + AK+ FLA MSHE+RTPLN
Sbjct: 816  RLLRGADGAPSGYVASLRDVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLN 875

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
             ILG+++++          E  +     I  +G  LL ++N+ILD S+IEAG+ EL    
Sbjct: 876  GILGYTDLLLE---DATLGEGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRP 932

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
              L  +V   I +++    +K I I   +DP +   +  D+  +RQV+LNLL+NAVKFT 
Sbjct: 933  FLLDALVDNTISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTH 992

Query: 385  IGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G V ++V      G       S+ D G GI E +   +   F Q   +I     G GL
Sbjct: 993  A-GSVTLSVSCLEPAGATAALRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGL 1051

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489
            GL I+++++   GG   + S++ +G        LP    L    E +  + 
Sbjct: 1052 GLAISKNLVELMGGTIDVESEVSKGTTFWFTVTLPVGGALTAPSEPSRAAA 1102


>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           301]
 gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           2457T]
 gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
 gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
 gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella
           flexneri 2002017]
 gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2a str. 2457T]
 gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 4343-70]
 gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-671]
 gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2747-71]
 gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 2930-71]
 gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-218]
 gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-304]
          Length = 918

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 12/297 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +   V+   +A +          +   +   N  +L   +E +  I +L+ A    +E 
Sbjct: 189 AIIGSVMLFVIAILTLLVNRGIVVLERVVENRNKMLLLVNSELEQEIQKLKSA----EEA 244

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R  AE  +  K  FLA+MSHELRTP+NA++G S +     +    ++  ++Y+  IH S 
Sbjct: 245 RSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTEL----SDKQQDYLQKIHSSA 300

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL ++N+ILD+S+IEAG+ EL   A  L +++     +L  ++ EKN+E+  +  P +
Sbjct: 301 KSLLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDV 360

Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAE 414
            SV   D   + QV++NL  NAVKFTA G   V + +    G       ++KD G G+++
Sbjct: 361 PSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVSIDLEKEEGDQVVLRFAVKDTGIGMSQ 420

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            EI  +   F Q   +I     G GLGL I++ ++   GG+  + S    G + I  
Sbjct: 421 SEIDKLFRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFT 477


>gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 993

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L+ + E  + L+ +    AEE N+AKS FLA+MSHE+RTPLN+I+GFS+++    + 
Sbjct: 360 NRKLLDQSEQLQKLAVD----AEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCASDIN 415

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +    KEY   I +S + LL++IN+ILD+S+IE+G+ EL +    L  ++   I M+ 
Sbjct: 416 AND----KEYALTISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMIS 471

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GW 395
           +RA EK+I      D ++   +  D + ++QV++NLL NAVKFT  GG + ++V      
Sbjct: 472 VRASEKDINFLFYCDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKA 531

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    + D G GI+E  +  +   F Q    I     G GLGL I   I+     +
Sbjct: 532 DDTVDVRFEVHDTGIGISEAAVAHIFEPFHQADAGINRKYGGTGLGLTICNKILHIMESE 591

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI-PEDNHESTQYKC 493
             + S    G      +   +    I P DN +     C
Sbjct: 592 IRVYSSEGVGSTFDFTVSFEKDEKHIKPLDNRKKNTAFC 630


>gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 666

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 10/299 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                   + L          +  + Y +  +  +        D  + +    + +  E 
Sbjct: 217 WTLGFQEHVELRVSHPWRGLCWFVVAYEVVGTQDEPRITGYVHD--VTKQRQHECMLREA 274

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE  N AKS FLA+MSHE+RTP+N I+G + ++    + P      ++Y+  IH + 
Sbjct: 275 KESAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDLSP----QQRDYVEKIHSTC 330

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL++IN++LD S+IEA   +L       ++ +   + +L+ R Q KN  +   IDP +
Sbjct: 331 ESLLDIINDLLDFSKIEANHMDLEALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDI 390

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAE 414
              +  D   +RQ++LNL  NA+KF+  G  RV + +    G    ++  + D G G++E
Sbjct: 391 PQTLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHREGNSVTLACLVSDEGIGMSE 450

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            E   + T F Q   +I     G GLGL + + ++   GG+  ++S   +G      LP
Sbjct: 451 EEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGGRIHVQSAPGKGSVFRVELP 509


>gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 655

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 143/286 (50%), Gaps = 10/286 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +     +    +    +  L++A+    + + +AE  N AKS FLA+MSHE+RTP+NAI+
Sbjct: 136 QKLYTTIRLALKSYQDLNTLKIAEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAII 195

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS+++       + ++    YI  I  + + LL LI++ILDLS+IEAGR E+    ++L
Sbjct: 196 GFSDILAS----KITDKKQINYISSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNL 251

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             I      +  L+  EKNIE   +ID +L   ++ DE  +RQ++LNL+ NA+KFT   G
Sbjct: 252 QGIFIALQQVFSLKIAEKNIEFIMEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNS-G 310

Query: 388 RVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V +          YI    +++D+G GI   +   +  SF Q          G GLGL 
Sbjct: 311 YVKLCANKIDTEENYIDLTLAVEDSGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLT 370

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           I + ++    GQ  + S   +G      L   +V         ++T
Sbjct: 371 ITKRLVEMMNGQISLTSSPGKGSRFEIALHKVKVAVTEQTVKTDNT 416


>gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 551

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 16/321 (4%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-------- 225
           +       + +   +  G +   +  F    +   +  V+     AE+  +         
Sbjct: 99  MPAGYAAYLGIPIKTPMGKVLGTVCSFYRQPHRCTEEEVQFAEVLAERAAIAIDNYQLYQ 158

Query: 226 ------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                 A+               E     K  FL++MSHELRTPL AI+G +EV+  E  
Sbjct: 159 RQQLVNAQYRQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVY 218

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L N    + +  I  SG+ LL  +N+++DLS+IE+G   L    +S+  +V  C+ M+
Sbjct: 219 GSL-NPKQLKSVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMV 277

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + +AQ++NI +   I   L+ V  DE  +RQV+ NL+SNA+KFT  GG V V     + +
Sbjct: 278 RPQAQKQNITLSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQ 337

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GIA  ++  +   F Q   +      G GLGL + Q ++  HGG   + 
Sbjct: 338 -VQVRVTDTGIGIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVE 396

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S++  G   I  LP + V   
Sbjct: 397 SEVGSGSTFIVTLPCSYVSAE 417


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 1010

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 162/319 (50%), Gaps = 4/319 (1%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +AL     ++ H    ++   +  A      +   +F   ++           +   + A
Sbjct: 562 LALMVSHDLAEHHYFTTIDLQIQRANGEMLDVAMRVFGLTLQGQPHYLATLRDVTTEKHA 621

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +           K  FLASMSHELRTPLNAILG SE +     GPL NE   + +
Sbjct: 622 EEKLRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPL-NERQLDAL 680

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I  SGQHLL LIN+ILDLS++EAGR +L   A+S+ ++ +  ++ ++ +A +K++ + 
Sbjct: 681 HNIEASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLS 740

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGP 410
             +D  ++ + AD + ++Q+++NLLSNAVKFT   G V++ V            ++D G 
Sbjct: 741 FHLDDQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGI 800

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA+ ++P +   F Q    +    +G GLGL + + +   HGG  ++ S+L +G     
Sbjct: 801 GIAQDDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSI 860

Query: 471 ILPNTRVLNFIPEDNHEST 489
            LP  +    +P    + T
Sbjct: 861 QLPYRQ--PEMPNTTPDPT 877


>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 1079

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 181/475 (38%), Gaps = 33/475 (6%)

Query: 13  GLLISPTGDHLGLEYPSKM-----DFDREIITLHVESLFRVSPILPLFVLLVA--NIGTW 65
             L+S     L    P +       +D   IT  ++ L   +          A    G  
Sbjct: 172 AELVSQAWSRLTAGAPGQPLDTTTRYDLRRITGVIDYLHTQASEALAKAQTAAPQAAGHL 231

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
               P             +   +L       +       +        Q+A  + + L+ 
Sbjct: 232 QIPKP----------VSDSIERALSSNTWRLEPSTLATALTARLDADYQLADKVSFVLVD 281

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L+       +   I      ++ L I +   + L   +        ++ + QAI    + 
Sbjct: 282 LLHQRIDRLQRRVILSLVIGVLGLLIVSALGWSLIRDITQPLG--ELSTTAQAIEEGELD 339

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRK---R 241
                      +         +  +  +      E + +++A  E  ++ + E       
Sbjct: 340 APVTVRHRRDEIGRLADALRRMIIAQRQSRQKLVENNLEMLAANEKLQAKTAEAEHLAVE 399

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A   N AK  FLA MSHE+RTP+N I+G +E+     + P+     +EY+  +  S + L
Sbjct: 400 ATAANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPI----QQEYLEMVRSSAETL 455

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L L+N+ILD S+IEAGR EL      L D++ + +  L +RA    +E+  +I P +  +
Sbjct: 456 LELLNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLELALQIRPDVPDA 515

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416
           +  D   +RQV++NL+ NA+KFT   G V V V               ++D G GI    
Sbjct: 516 LTGDPHRLRQVVVNLVGNALKFTER-GEVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEA 574

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +  +F Q   +      G GLGL I   ++   GGQ  + S++ +G      
Sbjct: 575 QARIFNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVESQVGQGSTFTFT 629


>gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 939

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 18/277 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           ++  ++NV +   Q E   +        I EL+  +++  E +++AE  +  KS FLA+M
Sbjct: 671 WNWIRTNVVVNQYQPENGQIELIGVNYDITELKETEAMLIEAKEKAEAADRLKSAFLANM 730

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNAI+GFS ++        N E  K+YI  +  +   LL LI++ILDLS+IEA
Sbjct: 731 SHEIRTPLNAIVGFSSLLGET----ENVEERKQYIAIVEENNDLLLQLISDILDLSKIEA 786

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G ++ ++ A+ +  +  + +  ++++ +   +E+          + +D   + QV+ N +
Sbjct: 787 GTFDFTKRALDVNLLCEDIVRTMRMKVK-PGVELLFDSHLPECQIVSDRNRLNQVLANFV 845

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NAVKFT+  G + V             + D G GI   +   V   F +      +   
Sbjct: 846 NNAVKFTSA-GSIRVGYEPLDENRLRFYVADTGIGIEPEKQVQVFDRFVKLD----TFVP 900

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++SI+   GG   + SK+ EG      LP
Sbjct: 901 GTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLP 937


>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 764

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 11/249 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      R+RAE  N AKS FLA+MSHE+RTP+N ++G +E++   ++    +E  K Y 
Sbjct: 199 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTSL----SEEQKLYA 254

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA +  L E    L   + E +++LQ  A++K + + 
Sbjct: 255 NTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTML 314

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISI---- 405
              D  L      D   +RQV+ NL  NAVKFT   G V + V G ++      S+    
Sbjct: 315 VDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNE-GHVTLRVTGISNPDEGTCSVHCLI 373

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI   ++  V   F Q         +G GLGL I++ ++    G+  + S   EG
Sbjct: 374 EDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWVESDEGEG 433

Query: 466 VEVIAILPN 474
                 +P 
Sbjct: 434 SCFGFRIPL 442


>gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 915

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 156 IFSACLVLIMGLLLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 209

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 210 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 269

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 270 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 325

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E + +    A EK +EI  K+DP + + +  D 
Sbjct: 326 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDP 385

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + ++V   S R   +     ++D G GI+E +   + 
Sbjct: 386 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLF 444

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 445 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 495


>gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 959

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 9/281 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +     ++     E +       E     +  +  K  FLA+ SHELRTPLN ++G S
Sbjct: 554 IGVFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLS 613

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E +     GPL  E  ++ +  I +SG  L  L+N+ILD S++     EL    + L +I
Sbjct: 614 ESMLDGVAGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREI 672

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V   +++ +     K+IE+  +I     +V ADE  ++Q++ NL+ NA+KFT   G V +
Sbjct: 673 VEVVVVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLIGNAIKFTDS-GTVKI 731

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           T              I+I D G GI   +   +  SF QG  +      G GLGL I + 
Sbjct: 732 TASVLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQ 791

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           ++  H G+  + S +  G      LP +     IPE   ++
Sbjct: 792 LVELHQGKIWLDSVVGSGSTFSFTLPIS---EEIPETTAKA 829


>gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1084

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/290 (30%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 196  ALSFFTYITYHLFKSNVKIL---SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
             +  F  +   L  +          QA    +  ++    +  ++   R  E +  +S F
Sbjct: 772  FVDLFAVLANQLAMAAANAQLYGEVQAYSHAMEEKVARRTAELEQANTRLLELDRLRSDF 831

Query: 253  LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            L+++SHELRTPL +I  FSE++        + E  ++++  I    + L  +IN++LDLS
Sbjct: 832  LSTVSHELRTPLTSIRSFSEILLR--YEVDDPEKRRKFVAIIASEAERLTRMINDLLDLS 889

Query: 313  RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
            RIEAGR EL    + L  +    +   Q    EK ++   +I+  L  V AD   M QV+
Sbjct: 890  RIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIEAGLPQVLADADRMHQVL 949

Query: 373  LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             NLLSN+VKF+  GG + +  G   G    IS+ D GPGI    +  V   F Q     K
Sbjct: 950  TNLLSNSVKFSPEGGTIRLG-GRRQGEFALISVTDQGPGIPADRLEQVFERFHQVRTPQK 1008

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            S   G GLGL I++ I+   GG+  + S+L  G      +P  +     P
Sbjct: 1009 SHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVPLLQEAGASP 1058


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1547

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I E    +        +A+  + AKS FLA+MSHE+RTP+N ++G + ++    +  
Sbjct: 815  QQDITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDL-- 872

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              NET + Y   +  SGQ LL L+N+ILD S+IE+G+ EL      L D +     M+  
Sbjct: 873  --NETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAF 930

Query: 342  RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
            +A+EK +E     DP +   +  D   +RQ++ NL+ NAVKFT   G V V V       
Sbjct: 931  KAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTER-GEVVVRVSIQESGV 989

Query: 400  ---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                       + S++D G GI   ++  +  SF Q   +I     G GLGL I++ +  
Sbjct: 990  RSQESQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAE 1049

Query: 451  NHGGQFLIRSKLREGVEVIAIL 472
              GG   + S   +G      +
Sbjct: 1050 MMGGDVGVDSVEGQGTTFWFTI 1071


>gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 497

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 16/266 (6%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + ++ +L  +    K +++E +      N AKS FLA+MSHE+RTP+NA+LGF+++++
Sbjct: 154 QEKEQRQELTYKNIRLKKMTEEAK----AANRAKSEFLANMSHEIRTPMNAVLGFADLLQ 209

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   +     YI  I  SG+ LL LIN+ILDLS+IEAG+ +L    +++  I+ E 
Sbjct: 210 STI----TDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEI 265

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
             + + + +EKNI++   I P +   +  DE  +RQ++ N++ N++KFT  G  ++  + 
Sbjct: 266 EHIFEQKTKEKNIKLQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASC 325

Query: 394 GWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   Y      I+I D G GI+  +   +  SF Q          G GLGL I + 
Sbjct: 326 SQLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITER 385

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           ++   GG   + S++ +G       P
Sbjct: 386 LVHLLGGSIHLESQINQGSTFTFDFP 411


>gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 569

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/345 (31%), Positives = 174/345 (50%), Gaps = 13/345 (3%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
           ++  ++    +++ L   +    +L     +    +   +    I S+          L+
Sbjct: 95  DHTILFLLPIIMVGLISGSFR-MILSGFFNIGLVFIFFYIYQAEIRSIT---YYNLLFLS 150

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKS 250
             +     +   L  +  + L  QA    L+ E     + S +     ++ AE+ NL KS
Sbjct: 151 IVIFLLWLLVRALENALRQSLHLQANLQHLVDERTAQLATSVQEAKSAQRLAEQANLRKS 210

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +FLA+MSHELRTPLNAI+  +E I  +  GPLN+   K Y   +  +G+HLL+LIN+ILD
Sbjct: 211 QFLATMSHELRTPLNAIINMTEFI--DWFGPLNS-QQKSYQDQVRGAGEHLLHLINDILD 267

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LS+IEAGR EL    +   DI +E +  ++  A+ K ++I           WAD K ++Q
Sbjct: 268 LSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIAYHHADGTGLAWADSKAIKQ 327

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++LNLLSNA+KFT   G++ V + +++     IS+ D G GIA  +   +  SF Q   A
Sbjct: 328 IVLNLLSNAIKFTET-GQIRVALEFSA-TTVNISVHDTGIGIAREQQQFIWESFRQIQSA 385

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                +G GLG+ I + ++  HGG   + S+L +G +    LP  
Sbjct: 386 DDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVCLPTK 430


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 158/366 (43%), Gaps = 10/366 (2%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L      G  W L+T+           +  +   ++  LS+      +    +     P+
Sbjct: 344 LAVAPIKGPDWLLVTVYPKALVNEAAQSTARFVLIIGLLSLIVEMLMLYVVTLNKVVNPL 403

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +     + +      +  +G +    +    +                   +L  ++  
Sbjct: 404 KMLGKASSEIGKANYQLVASGAIELPSNRKDEVGILANAFKSMATRIFDYNTNLEQKVSE 463

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             S   E RK+AE  + AKS FLA MSHE+RTP+NAI+G S+++    +    N+  +++
Sbjct: 464 RTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL----NKRQRDF 519

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  S   LLN +N++LD S+IEA +  L  +   + D++R    +   +AQ K +E+
Sbjct: 520 MEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVEL 579

Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISI 405
              ID  +   W  D   + Q+++NL SNAVKFT   G V + V       Q      S+
Sbjct: 580 LLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQ-GEVIIRVKLLEQHNQQSTLRFSV 638

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI +  I  + T F Q   +I     G GLGL I++ +    GG+  + S+L  G
Sbjct: 639 IDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVESQLNVG 698

Query: 466 VEVIAI 471
            +    
Sbjct: 699 SQFHFT 704


>gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 957

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           ++    +    I     +  + +  +E+     D  RK A E +  KS FLA+MSHE+RT
Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+GF+E++    +        ++++  I +S + LL +IN+ILD S+IEAG+  L 
Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILD 361

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                L DIV E ++ML   A  KN+++     +    ++  D   ++QVI NL++NA+K
Sbjct: 362 RVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421

Query: 382 FTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           FT   G V +                 +SI D+G G++  +  ++  +F Q   +     
Sbjct: 422 FTQT-GEVVLRASLEEEEADTNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I++ ++   GG+  + S+L +G      L
Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 631

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 6/254 (2%)

Query: 225 IAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           I   E  K  ++E     +  +  +  K RFL+++SHEL+TPL +I G++E+I  E++G 
Sbjct: 380 IESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYDESLGT 439

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L+ E  KE    + R+   L  L++ +L +SR ++G  +     +S+++IV   +  L++
Sbjct: 440 LS-EQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQDLKI 498

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           + +EK + + + I   + ++  D   +  ++ N++ N++KFT  GG +  T+        
Sbjct: 499 QIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKFTIK-EEDEFI 557

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I +KDNG GI    IP +   F Q   +      G GLGL I + I+  H G+  + SK
Sbjct: 558 HIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIWVESK 617

Query: 462 -LREGVEVIAILPN 474
              +G E+   LP 
Sbjct: 618 GENKGTEMHIQLPK 631


>gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3309

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 154/326 (47%), Gaps = 16/326 (4%)

Query: 162  AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            A      P++ A    A +S +   +         +         L ++   + +   E 
Sbjct: 2752 AELGIVEPILTADGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEEL 2811

Query: 222  DDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
            +  ++E     E       E ++ A+  N AKS FLA+MSHELRTPLN ILG+++++   
Sbjct: 2812 EARVSERTAALEQTNHALAEAKEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRS 2871

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  +   K  +  IH+ G HLL LIN+ILDLS+IEA + EL+     L+ ++   + 
Sbjct: 2872 D---QISPRDKRGLEVIHQCGSHLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVD 2928

Query: 338  MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            M  L+A +K IE+  ++D  L   V  DEK  RQV++NL+ NA+KFT   G V   +   
Sbjct: 2929 MFHLKATQKGIELLFQLDNDLPKGVEIDEKRFRQVLINLMGNALKFTEK-GSVTFQILQL 2987

Query: 397  SGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       +I D G GIA  ++  +  +F Q         +G GLGL I+Q I+   
Sbjct: 2988 EANAGQATLRFAIIDTGVGIATEQLSRLFKAFEQVGDPRN-HTEGTGLGLAISQRIVQLM 3046

Query: 453  GGQFLIRSKLREGVEVI--AILPNTR 476
            GG   + S+L  G E      +P  +
Sbjct: 3047 GGDIQVSSQLGAGSEFSFCVTVPLAQ 3072


>gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1568

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 134/315 (42%), Gaps = 37/315 (11%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                +   +  +  +    + E        E      ++ R+ AE    AKS FLA+MSH
Sbjct: 859  LLEAVADQVGIAIAQAHLWEQETRQRQQLTEQ-NVALEKARQTAEAATQAKSEFLATMSH 917

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+NA++G + ++    +        + +   I  SG  LL +IN+ILD S+IE+G+
Sbjct: 918  EIRTPMNAVIGMTGLLLDTELTS----DQRYFAETIRNSGDALLTIINDILDFSKIESGK 973

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             EL E    L   + E + +L  +A EKN+E+   ID      +  D   +RQ+++NL+S
Sbjct: 974  MELEEQPFELRTCIEEALDLLTTKAAEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLIS 1033

Query: 378  NAVKFTAIGGR-VHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NAVKFT  G   V VT    +             ++KD G GI    I  +  SF Q   
Sbjct: 1034 NAVKFTPTGEVLVSVTAQILADEEDRGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDS 1093

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-------------------KLREGVEVIA 470
            +      G GLGL I + +    GGQ  + S                   +   G     
Sbjct: 1094 STSRQYGGTGLGLAICKRLCEMMGGQMWVESGGSVAGNPPAGWIATDSGEESSGGSTFYF 1153

Query: 471  ILPNTRVLNFIPEDN 485
             +    +   IP+  
Sbjct: 1154 TI----LSESIPDSA 1164


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/273 (35%), Positives = 139/273 (50%), Gaps = 19/273 (6%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                          ++ AE  NLAKSRFLA+MSHELRTPLNAILGF++++  +   P  +
Sbjct: 1222 AELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQ---PQFS 1278

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                EY+  IHRSG+HLL LIN+IL LS++EAGR  L      L  +++    M  L+A 
Sbjct: 1279 GEPSEYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAA 1338

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------ 397
             K +++  K D ++   +  DE  + QV++NLLSNA+KFT   G V +TV          
Sbjct: 1339 NKRLQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFT-SFGEVCLTVRSQPVPAEMS 1397

Query: 398  --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                     ++D G GI   E+  +   F Q     K   Q  GLGL I++  +   GG+
Sbjct: 1398 SNSCYLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVK-QSTGLGLAISREFVELMGGK 1456

Query: 456  FLIRSKLREGVEVIAILPNTRV-----LNFIPE 483
              + S+L+ G      +P  RV        +P+
Sbjct: 1457 ITVESQLKHGSVFQFTIPLERVQLASIQPELPQ 1489


>gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 931

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L ++++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---NMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    M      +  +Y+  I +S  +LLN+IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQMSN----SQMDYLQTIEKSANNLLNIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E I +    A EK++EI  KIDP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLKIDPKIPQGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ N++KFT  G   + V +   SG    +   ++D G GI+E +   +  
Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514


>gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 801

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 9/279 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I     +    +L+        + E +  +     + + A   N +KS FLA+MSHE+RT
Sbjct: 348 IARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRT 407

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+ AILG+++V+    +G L +   +  +  I R+G+HLL+LIN+ILDLSRIEAG+  + 
Sbjct: 408 PMAAILGYADVL----LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVD 463

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
             ++ L  +V +   ++Q+RA EKN++   + +  +   +  D   +RQV++NL+ NA+K
Sbjct: 464 AESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIK 523

Query: 382 FTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT   G V + V +  G        SI D G GI++ +   +   F QG  ++     G 
Sbjct: 524 FTDE-GSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGS 582

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           GLGL I+Q ++    G+  + S+L EG      LP   V
Sbjct: 583 GLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLPVHSV 621


>gi|189426492|ref|YP_001953669.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422751|gb|ACD97149.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 717

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 159/365 (43%), Gaps = 23/365 (6%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
                 G C   +              +   A     L + +++     + +F+   P  
Sbjct: 92  CASRLQGACDAAIMDGAFAWALNRNQAVMVPAQGGGTLLLQSITTRSRIHGMFVGQVPDE 151

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A       +  +  +S+    A      T +   L K ++  L  +          E  
Sbjct: 152 SAT----FDAPSLNALSILLNAAAYALESTTL-RGLLKEHMANLEQRV---------EER 197

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                  R++AE  + AKS FLA+MSHE+RTP+N ++G +E++      P   E  ++ +
Sbjct: 198 TRELAIAREKAEAASRAKSEFLANMSHEIRTPMNGVMGMTELLLDGGFSP---EQQRKQL 254

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S ++L+ +IN+ILD S+IEAG+ EL+ +   L   + + +  L L+A++K + + 
Sbjct: 255 LAIRDSAENLMVIINDILDFSKIEAGKLELAAAPFLLRKNLEQGLYSLGLKAEQKGLRLV 314

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
            ++D ++   +  D   +RQ+++NL+ NA+KF+   G + V+    + RG        + 
Sbjct: 315 IRVDQAVPDRLDGDCYKLRQILINLVGNAIKFSDQ-GEITVSAQLEASRGGFLLVRFCVA 373

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI       +  +F Q  +       G GLGL I + +    GG+  ++S+  +G 
Sbjct: 374 DQGIGIPLESQSRIFETFEQADVTTTKKFGGTGLGLTICRRLAELMGGRIWVKSEPGKGS 433

Query: 467 EVIAI 471
                
Sbjct: 434 SFFFT 438


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 11/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+ +    + +AEE    K+ FLA+MSHE+RTP+N +LG   ++     G    
Sbjct: 125 ITDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLL----TGSPLT 180

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++     S + LL +IN+ILD S++EAG+ +L  +   L  ++ E + +L+  A+
Sbjct: 181 PDQRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAAR 240

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K + +  +I  ++      D   +RQV+ NL+ NAVKFT   G V V+V          
Sbjct: 241 DKGLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEK-GDVAVSVEPEESDSSRL 299

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G GI     P + + F Q   +I     G GLGL I + ++   GG+    S 
Sbjct: 300 RFEVADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSI 359

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             EG      LP +     +P+ +  + +
Sbjct: 360 PGEGTTFHFTLPLS---AALPDQDSGAAE 385


>gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 582

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +    +   + E  + ++  I+  
Sbjct: 343 AVRRLE---RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMARSFLQIIYDE 397

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI +IL+LS+IE+ R  L  S + +  IV   I M++  A++K+I +   ++  
Sbjct: 398 SDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENE 457

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGP 410
           L  + ADE  +RQ+++NLLSN + +T  GGRV + V +              I I D G 
Sbjct: 458 L-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGI 516

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   A   +  G GLGL I + +   H G   + S+  +G     
Sbjct: 517 GIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNI 576

Query: 471 ILPN 474
            LP 
Sbjct: 577 ELPV 580


>gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437]
          Length = 595

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 1/234 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ +  +  F+A++SHELRTPL  I  + E +  E       E    ++    +  + 
Sbjct: 355 EEEKLDRQRKEFVANVSHELRTPLTTIKSYLEAL-DEGGAMEEPELASRFMRVTRQEAER 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI+++L LSR++A +    ++ + L  ++ +       + ++K I+    ++  L  
Sbjct: 414 MTRLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPR 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+AD   + QV+ NLLSNAVK+T  G ++ +T    S     +++ D G GI + ++  +
Sbjct: 474 VYADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDLERI 533

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A   +  G GLGL IA+ I+  HGG   + S   +G  V   LP 
Sbjct: 534 FERFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLPP 587


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/337 (29%), Positives = 165/337 (48%), Gaps = 29/337 (8%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P+   +    + +   ++  + G+   A+ +         +  +  +    +   L   L
Sbjct: 77  PISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQ--EEVLARVRLHLKLYFLTKTL 134

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN----- 283
               +   E +++AE  N AKS FLA+MSHELRTPLN ILG++++++ +     +     
Sbjct: 135 AEQNAYLQEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDAALAASKGERN 194

Query: 284 -NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E +  I +SG HLL LIN+ILDLS+IEAG+  L  +  +L+  + E + ++++R
Sbjct: 195 LTAKQLEGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMR 254

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A EKNI +  + + +L + V ADEK +RQV++NLL NAVKFT   G V   VG    +  
Sbjct: 255 ASEKNIVLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQ-GNVTFNVGVIEDQNP 313

Query: 401 ---------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                              + D G GI+  ++ T+   F Q   + K    G GLGL I+
Sbjct: 314 TSLDQGKDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDS-KYRAAGTGLGLAIS 372

Query: 446 QSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF 480
           + ++   G Q  ++S+L +G        LP  +V   
Sbjct: 373 RQLVEFMGSQLNVKSELIKGSMFWFDVALPVVKVTEA 409


>gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 600

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 191/457 (41%), Gaps = 16/457 (3%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
             P +         +       +     L VL   N       +            V A 
Sbjct: 119 AVPLEAALSASRRVVTAAVALALGCAAMLVVLESMNALPPSHLSSDVASLFTGLCIVLAT 178

Query: 86  NLSLGKKVMNSDIKIGE---VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
             + G       +       + V      +    I                 +   I  +
Sbjct: 179 IYAAGLAFGAESLARTSKHLLAVEERRYRLLARNISDVIA------RHRANGDLNFISPA 232

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS-FFT 201
           A +L+ +    L    L   V ++  P  +   + A        +       +     F 
Sbjct: 233 AEVLLGVPGPTLLLHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRVRRESPHGPEFA 292

Query: 202 YITYHLF-----KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           ++          +               + E ++ +   +  R+ AE+   +KSRFLA+M
Sbjct: 293 WVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQEAEQAGASKSRFLATM 352

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAI+GFSE+I  E    L+    +EY G I+ SG HLL+++N ILD+S++E+
Sbjct: 353 SHELRTPLNAIIGFSEMIAREDEMKLDAARRREYAGLINESGLHLLSVVNGILDMSKMES 412

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G++EL     +  + +  C  ++ L+A++  I++  ++   L  +  D +  +Q++LNLL
Sbjct: 413 GKFELVSEPFAPREALSSCCNLMVLKARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLL 472

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+KFT  GG V V+     GR   + + D G GI + ++  +   F Q   + +   +
Sbjct: 473 SNAIKFTGEGGSVTVSA-QVEGRELLLRVADTGIGIGKDDLARLGNPFFQAGASYQGRRE 531

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I +S+++ HGG+  + S+L  G  +   LP
Sbjct: 532 GTGLGLSIVKSLVSLHGGEMKVESELDRGTTISVRLP 568


>gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory
           transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 893

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 171/373 (45%), Gaps = 16/373 (4%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            ++      G  +           + + +++     ++I++    +  F++   +     
Sbjct: 267 RMIFAVQMSGGYYVSTIPKAVLYQSGKAISLITGLIVIISVITLPILIFIVVRNLL--LN 324

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P+ +  +    +    L +SL       +        H+            E    + + 
Sbjct: 325 PIELLGAASHRVGDGDLGVSLPAHTDDEVGILFNDFNHMVNQIRHYQEQLEEYKHHLEDK 384

Query: 229 --------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                   E   S  +    +AE+ N  KSRFLA+MSHE+RTPL AI+GF+E +      
Sbjct: 385 VESRTKALETMNSQLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKI 444

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             N    K+++  I R+ +HLL LIN ILDLS+IEA +  + ++ ++++ ++ +   +++
Sbjct: 445 TNN----KQHLSTILRNSKHLLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIE 500

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             AQ+K +++       L   + +DE  ++Q+++N+ SNAVKFT   G V +TV +   +
Sbjct: 501 PLAQQKKLKLSINYQLPLPHTINSDETRLKQILINIASNAVKFTEQ-GHVSITVHYLPSQ 559

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I+D+G G+ E +I  + T F Q          G GLGL I++++    GG   ++
Sbjct: 560 ELMFVIQDSGIGMVESQIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVK 619

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 620 SELDVGSCFTITI 632


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
            +    V                 ++T ++          ++    ++   E  K LSDE 
Sbjct: 968  LAEGRVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTE-LKLLSDEL 1026

Query: 238  --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I 
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            R+ + LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K +E+   + 
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
            P++   ++ D   + QV++NL++NA+KFT   G V +++     +        S++D+G 
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+   +   +  SF Q   +      G GLGL I + ++   GG   + S+   G     
Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 471  I 471
             
Sbjct: 1262 T 1262


>gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 453

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 6/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     +S F+A++SHELRTPL +I GF E +    +   N E   +++  I    +
Sbjct: 222 RKLE---KIRSDFVANVSHELRTPLTSIRGFIETLREGAID--NVEERDKFLEIIEFEAE 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +    +  I++ D V E   +++  A +K+I++ + ++ S  
Sbjct: 277 RLTRLINDILTLSEIENLKEGFVKEDIAIDDEVNEIFYIMEKTANDKSIKLIKDLNCSGV 336

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +   +  +RQ+I+NL+ N +K+T  GG V VT          I +KD+G GI++  IP 
Sbjct: 337 VIKTSKDRLRQMIINLVDNGIKYTPEGGYVKVTT-IDRKGDVVIEVKDSGIGISKENIPR 395

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +          G GLGL I + I+ +  G   + S++ +G +   +LP  +
Sbjct: 396 LFERFYRVDKGRSRKLGGTGLGLAIVKHIVESMKGSISVESEVGKGTKFTIVLPKDQ 452


>gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 574

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 27/341 (7%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           +      +    ++A+ T   ++  +   +      +  S F         ++ ++    
Sbjct: 237 ISSLTLSAAIAAMLAIYTSKAIARPLEATTKIAQQVSEESNFDL--QVPITTSDEVGQLA 294

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              ++LI  +        E +  AE  N +KS FLA+MSHELRTPLNAI+ +SE+++ + 
Sbjct: 295 IALNELILRVGEYTEELQEAKIAAEAANRSKSAFLANMSHELRTPLNAIINYSEMLQEDA 354

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +   + +  I  +G+HLL++I++ILD+S+IEAG   L      + +++ E +  
Sbjct: 355 QDEGYEDFLPD-LERIQTAGKHLLDMISDILDISKIEAGHVTLYLENFDIANMIEEVVTT 413

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            Q   ++K   +  +I+  + +++AD+  +RQ++LNLLSNA KFT   G + +++     
Sbjct: 414 AQPLVEKKGNTLAMQINGDVGTMYADQPKVRQILLNLLSNAAKFTEK-GVITLSIERIKN 472

Query: 399 RG----------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
                                       + D G G+ E ++  +   F Q   +      
Sbjct: 473 DKFKSKNKKYKQEYPPALNSNSQVLIFRVSDTGIGMTEEQLQHIFKPFTQADASTTRKYG 532

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           G GLGL I+Q +    GG+  + S++  G      LP  RV
Sbjct: 533 GTGLGLTISQRLCQILGGEIAVESEVERGSTFTVRLP-ERV 572


>gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 854

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/319 (30%), Positives = 155/319 (48%), Gaps = 14/319 (4%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD----------LIAE 227
                 +  ISL       + F+  +     + +        E+D           L  E
Sbjct: 295 YWAQAIITIISLVVAGILFVFFYWLLGRIERRIHAGEKRIIEERDRSEGLRLQSETLRVE 354

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E  +  ++  R  AE+ +  KS FLA MSHELRTPLNAI+G SE++  + +    +E Y
Sbjct: 355 AEEHRESAERARDDAEKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAV-EFGDEDY 413

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  + RS +HLLNLINEILD+S+IEAG+ ELSE+ +    ++ E    ++  A+ K 
Sbjct: 414 IEPLERVVRSSKHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKP 473

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           +    +   S+  +  D   ++Q+  NLLSNAVKFT   G+V + V   S + Q + + D
Sbjct: 474 LSFEYE-SASVGVIVGDALRIKQIFFNLLSNAVKFT-ESGKVKLKVVEQSDQLQ-VDVID 530

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  +  T+   F Q   ++    +G GLGL I++       G   ++S++ +G  
Sbjct: 531 TGLGMSIEQTETLFQDFVQVDSSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSV 590

Query: 468 VIAILPNTRVLNFIPEDNH 486
               LP  RV        H
Sbjct: 591 FSVRLPVKRVSQTQSNVEH 609


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 1034

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 7/287 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEV--AKSLSDETRKRAE--EENLAKSRFLASMSHELRTPL 264
           +        +AE   L +ELE   A+  +D +R  AE       K  FLA+MSHELRTPL
Sbjct: 597 RDITDRKRREAEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPL 656

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N IL FSE+++ E  GP+ NE  +  +  I  SG+HLL LIN+ILDLS++EAGR E+   
Sbjct: 657 NGILSFSELLQEEISGPI-NEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             S+++I    ++ ++  A  K +++      +L+ +  D K ++Q+++NLLSNAVKFT 
Sbjct: 716 IYSVVEICEASLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTP 775

Query: 385 IGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            GG+V + V   +        + D G GI   ++  +   F Q   ++    +G GLGL 
Sbjct: 776 DGGQVLLEVTTDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLA 835

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
           + + +    GG   + S    +G   I  LP   +    P   + + 
Sbjct: 836 LVRRLADLMGGSIGVESDGEGQGCRFILALPWNPISVIPPVAENPAP 882


>gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 830

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 162/399 (40%), Gaps = 11/399 (2%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
            L   A  ++   +   +   I E   +   +            L+ + +  T    Y  
Sbjct: 295 FLCSAADMIAAAIRQWETLRTIQEREHFIQRVTQATP------DLIYVYDLQTDQVIYTN 348

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           + +    +   +I   ++     A  L+     +     A                 +  
Sbjct: 349 MEQGPGGMPLTAIIGRTSDADLSARELATRQAYLTQIINAADMQVCSLEYRLQQADGSNL 408

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +         +      +        + E           ++ AE  N AKS FL+ MSH
Sbjct: 409 WLLRRDTVFVRDAQGYPTQILGIVQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSH 468

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL AI+G+S+++  + M   + E  K  +  I+ SG+HLL LIN++++LSRI++G+
Sbjct: 469 ELRTPLTAIIGYSQLL-GQLMTVGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQ 527

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L    ++++D+V E + M++         +  +    +  V  D   +RQ+ILNLL+N
Sbjct: 528 RNLDMRPVNIVDLVTEAVSMVRPLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNN 587

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A KFT   G +  T  +            I D G GI + +IP +   F Q   A+    
Sbjct: 588 AAKFT-ENGEITFTTIYDPQGEVPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRY 646

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +G GLGL + + +    GG+  ++S L  G      LP 
Sbjct: 647 EGTGLGLALCRRLCEVLGGEISVQSTLGVGSIFTVRLPL 685


>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 988

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 132/268 (49%), Gaps = 9/268 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +   +  ++ AE  N AKS FLA+MSHE+RTPLN I+G  +++E        +
Sbjct: 577 ISSRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLEST----DTD 632

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI     S ++L  LI++ILDLSRIE G   L     ++  +  E I        
Sbjct: 633 HEQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITELS 692

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRG 400
            K IE+   I+ ++   V+ D   +RQ+I N+  N++KFT+  GR+ +   ++       
Sbjct: 693 SKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSS-GRIFINIDSLIQRQTIY 751

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +I + D G GI E ++  +   F Q   ++     GVGLGL I + ++   GG   + S
Sbjct: 752 LFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMGGTITVES 811

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488
            + +G      +P       I ++ +++
Sbjct: 812 NIDKGTTTCIAIPFQTSEPPILDNTNKN 839


>gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 888

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 22/264 (8%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +   + ++ A+  N AKS+FLA+MSHELRTP+NA++G + ++    +         +++
Sbjct: 357 NTALVQAKRDADTANTAKSQFLANMSHELRTPMNAVIGMTGLLLNTDLDL----QQADFV 412

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG  LL+LIN+ILD S+IEAG+ E       L   + + + ++  RA +K++E+ 
Sbjct: 413 ETIRSSGDALLSLINDILDFSKIEAGKLEFENQPFDLRICIEQALRIVAPRAVDKSLELA 472

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRG 400
              +P     +  D   +RQ+I+NLL+N VKFT   G V V +                 
Sbjct: 473 YLFEPDTPEWIIGDVTRLRQIIVNLLTNGVKFTDT-GEVVVYIQDVTADHAAPVRKGHHI 531

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I +KD G GI    +  +  SF Q   +      G GLGL I   +    GG+  + S
Sbjct: 532 LQIVVKDTGIGIPADRMDRLFKSFSQVDASTTRKYGGTGLGLAICHRLCELMGGRMWVES 591

Query: 461 KLREGVEVIAIL------PNTRVL 478
            + +G      +      P  R +
Sbjct: 592 DVGKGSSFCFTISVPIADPAQRPI 615


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 153/293 (52%), Gaps = 7/293 (2%)

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L+    I         ++    AE+     +L  +      + +        K  FLA+M
Sbjct: 847  LATQLAIAIQQASLVEQLQQELAERHQAELKLTQSNQQLAISNQELARATRLKDEFLANM 906

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLNAILG +E ++    G +NN+ +K  +  I RS  HLL+LIN+ILD+++IEA
Sbjct: 907  SHELRTPLNAILGMTEGLQEGVFGMINNKQFK-ALETIERSSSHLLDLINDILDVAKIEA 965

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
            G+ +L  + IS+ ++    ++ ++ +A +K I++  KI  +L  ++ DE+ +RQV++NLL
Sbjct: 966  GQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLPDLFVDERRIRQVLINLL 1025

Query: 377  SNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            +NAVKFT   GR+ + V   S           I++ D G GI +  I  +   F Q   A
Sbjct: 1026 NNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSA 1085

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            +    +G GLGL + + I+  HGG+  + S+L  G      LP        P+
Sbjct: 1086 LNRQYEGTGLGLALVKKIVELHGGRVGLTSELGIGSCFTIELPCIPSTPASPD 1138


>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 927

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +  +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLPGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 844

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/278 (38%), Positives = 154/278 (55%), Gaps = 10/278 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELR 261
            +   + L+ +  +  +       + L++  RK      +AE  N AKS FLA+MSHELR
Sbjct: 556 NQEEARRLNEEQLQHAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELR 615

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI GFSE++  E  GPL ++ YK Y  DIH SGQHLL LIN+ILD+S+IEAG+  L
Sbjct: 616 TPLNAINGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNL 675

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               +SL D+  + + +++ RA+   +++     P L  V AD + ++QV+LNLLSNA+K
Sbjct: 676 KFEPLSLEDVTEDAVRLVRNRAEAAGLKLEIDFPP-LPEVEADYRAVKQVLLNLLSNAIK 734

Query: 382 FTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT   GR+ V              +S+ D G GIA  ++  +   F Q         QG 
Sbjct: 735 FTPRAGRIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGT 794

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGL + +S++  H G   + S   EG  V  ILP ++
Sbjct: 795 GLGLALTKSLVEMHDGALEMTSTPGEGTTVSFILPISQ 832


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 9/265 (3%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +  +    E    I E + A+    + +  AE     KS FLA MSHE+RTPLN +LG  
Sbjct: 969  INTVGQMIENTRAIRERDNAQQALVKAKNAAELAARTKSEFLAMMSHEIRTPLNGVLGML 1028

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             +++   +     +  +  I     S + LLNLIN+ILD S+++AG+ +L     ++I +
Sbjct: 1029 NLVKRTQL----EDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDFNIITL 1084

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            + +    +  RA E+  E+         + +  D   +RQ+++NL+ NA+KFT   G V 
Sbjct: 1085 LEDIAHAMAGRALERGNELIIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFT-QNGEVT 1143

Query: 391  VTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            VT   T         IS+ D G GIAE +IP + ++F Q   +      G GLGL I + 
Sbjct: 1144 VTASLTKNTSGFNLNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKK 1203

Query: 448  IMANHGGQFLIRSKLREGVEVIAIL 472
            + A  GG   I S+   G E    +
Sbjct: 1204 LCALMGGDINITSQEGNGSEFSFQI 1228


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+      ++ AE  N AKS FLA+MSHE+RTP+N ++G +++     +     
Sbjct: 380 ITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALETAL----T 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+     S + LL +IN+ILD S+IEAG+ ++ +    L  ++ + +  L LRA 
Sbjct: 436 EEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRAH 495

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399
           EK+IEI   +   +   V  D   +RQV++NL+ NA+KFT   G + +            
Sbjct: 496 EKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQ-GEIALQADLMQLQNGHA 554

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + +++D G GI+  +   +  +F Q   +      G GLGL I + ++   GG   + 
Sbjct: 555 VIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLH 614

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           S+  +G      +      N IP
Sbjct: 615 SEPGKGSTFHFSVQLQISENAIP 637


>gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1161

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 20/387 (5%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            ++ L              ++ T  I + +++    +   A+F         L +Q    
Sbjct: 360 AVIELGLNQQPNDSISLFLQAITESIGVGVNSAVARVKLRALFEQTQQQAEELESQQEEL 419

Query: 182 MHVLD--ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +  +  +  L  +          L ++N ++     + ++    +  AK       
Sbjct: 420 RTTNEELVYKSEQLQASEEELRVQQEELRQTNSELEEKAQQLEERNIAVNQAKEAMSLKA 479

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  E  +  KS FLA+MSHELRTPLN+IL  + +++      L NE   +Y G IH +G 
Sbjct: 480 EELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQIKYAGVIHNAGT 538

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LIN+ILDLS+IE+G+ +LS   +  + I ++   +    A+ K I     +D  L 
Sbjct: 539 DLLTLINDILDLSKIESGKLDLSILPLKPLVIKQDMEALFNELAKSKKISFHTVLDKELP 598

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------------TSGRGQYIS 404
            ++  D+  + Q++ NLLSNA KFT   G + +T+                T+     IS
Sbjct: 599 ATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSRQLKTTTEDIIAIS 658

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD+G GI   +   +  +F Q   +      G GLGL I++ +    GG+  + SK  E
Sbjct: 659 VKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHILGGEIQVNSKQGE 718

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQY 491
           G      LP        PE+    ++ 
Sbjct: 719 GSTFTLYLPKN--NATAPENQENISEI 743


>gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1391

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 19/294 (6%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKD---DLIAELEVAKSLSDETRKRAEEENL 247
                  +     +   L  +         EK+   +L  +    K ++ E +      N 
Sbjct: 855  VWTLDEIELLEAVARQLGIAIAHAQLLSQEKEQRQELTYKNIKLKKMTQEAK----AANR 910

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS FLA+MSHE+RTP+NA+LGF+++++        +     YI  I  SG+ LL LIN+
Sbjct: 911  AKSEFLANMSHEIRTPMNAVLGFTDLLQSTI----TDPKATSYIKAIASSGRTLLALIND 966

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
            ILDLS+IEAG+ +L    +++  ++ E   + + +A EKN+ +  ++DP L   +  DE 
Sbjct: 967  ILDLSKIEAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIMTDEV 1026

Query: 367  GMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPT 419
             +RQ++ N++ N++KFT  G  R+  +         Y      I+I D G GI+  +   
Sbjct: 1027 RLRQILFNIVGNSIKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISREDQHK 1086

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  SF Q          G GLGL I + ++   GG   + S+  +G      LP
Sbjct: 1087 IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140


>gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1058

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 180/429 (41%), Gaps = 24/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           +++    + +       ++ LI +      L      + +     +   +    +     
Sbjct: 248 MILPQGLSHWFDMHTDIIFVLIGIGSGVFTLV----FLEAKHTAPKTLPFIKVSIGFLAV 303

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS----------ISALSNFMLPYAVFLS 166
           +GLC +++ L  P         +   A      +           +    F        +
Sbjct: 304 MGLC-SMINLFPPIWQNAAVYVVSMLAISCYTYAGFESYSNQFYAARYFIFAWSILATCA 362

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +   +       +          L +AL     +     +  +++     +  + I 
Sbjct: 363 LIGMFSLVDMLPSNFITTYCFQFGVFLESALFSLALMDKSRHQLQLEVQQATNDLRNNIE 422

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +E      D  RK A   +  KS+FLA+MSHE+RTPLNAILGFS+ ++        +  
Sbjct: 423 LVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQADF----SAD 478

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++ I  I+ +  +L+ ++N++LD+S+IEAG+ +++    S+ +++ E I ++   A  K
Sbjct: 479 KRDQINIINAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLK 538

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQY--- 402
            +E    I+P    +  D   +RQ++ NLL NA+KFT   G + ++  G     G +   
Sbjct: 539 GLEFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKFTDT-GHIGLSASGKLLEHGIFELN 597

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I I+D G GI+  +   + T+F Q   A+  + QG GLGL I + ++    GQ  ++S  
Sbjct: 598 IKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSP 657

Query: 463 REGVEVIAI 471
            +G      
Sbjct: 658 GQGSVFNVT 666


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
            +    V                 ++T ++          ++    ++   E  K LSDE 
Sbjct: 968  LAEGRVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTE-LKLLSDEL 1026

Query: 238  --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I 
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            R+ + LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K +E+   + 
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
            P++   ++ D   + QV++NL++NA+KFT   G V +++     +        S++D+G 
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+   +   +  SF Q   +      G GLGL I + ++   GG   + S+   G     
Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 471  I 471
             
Sbjct: 1262 T 1262


>gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
 gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
          Length = 508

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 149/331 (45%), Gaps = 8/331 (2%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV--KILSC 217
              V      + +      I+  +           T L     +++ +  ++   ++   
Sbjct: 181 RITVGAFITTLFLTFLLGFILVRYTNRSFKRLQKGTELIGAGDLSFRIQTADQSGELADL 240

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               +D+  +L  A       +++A+  N AKS FLA++SHELRTPLNAI+G+SE+I+ E
Sbjct: 241 GRAFNDMSEKLANAIGEVQMAKEQADSANAAKSTFLANVSHELRTPLNAIIGYSEMIQEE 300

Query: 278 TMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                 +N +  +E +  I  SG+ LL LIN++LDL++IE G+  +   +   I  +   
Sbjct: 301 VNDGEAINKDQLQEDLTKIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTV 360

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              +      +  E+   I   L  +  D    RQ++ NLLSNA KFT   G + +  G 
Sbjct: 361 ADSMAPLLNTQGNEMCWDIQGPLPCIHTDATKFRQIVTNLLSNANKFTEA-GSITIRAGI 419

Query: 396 TSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           T  + Q +I ++D G G+ + ++  +  +F Q   +  S   G GLGL + Q      GG
Sbjct: 420 TDSQEQIWIEVRDTGIGMTDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGG 479

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
                S    G   I  LP    L   PED 
Sbjct: 480 DITASSTPNVGSSFIVTLPVN--LELDPEDA 508


>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 855

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 142/268 (52%), Gaps = 10/268 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + L         + E +  ++   + +  AE  +  KS FLASMSHE+RTP+NA++G ++
Sbjct: 368 RTLQGVFAAARDVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIAD 427

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    + P       +Y+    RSG +LLNLIN+ILDLS++EA + +L ++  SL D +
Sbjct: 428 LLAKTALTP----EQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHL 483

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + I M+  +AQEK + +  +I P +S  +  D   +RQV+LNLL NA+KFT   G+V +
Sbjct: 484 EKAIEMVAPKAQEKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQA-GQVSL 542

Query: 392 TVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   +          S+ D G GIA  ++  V   F Q   +      G GLGL I++ 
Sbjct: 543 KVERDADGSVPTALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKR 602

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++   GG+  + S L +G      +P  
Sbjct: 603 LVELMGGRIGVTSTLGQGSVFAFSVPFE 630


>gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 493

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +  +K          L  ++      ++  R+ AE+ N+AKS+FL++MSHELRTPLN 
Sbjct: 130 LHELELKNEELANHGTLLEEKVIRRTRDAERAREDAEKANVAKSQFLSNMSHELRTPLNG 189

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG+++V++         + YK  +  I   G+HLL +IN+ILD+S+IEAG+ +L    +
Sbjct: 190 VLGYTQVLQN---ASDLQDKYKGSLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYDEV 246

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            ++ +V +   +L+ +A EK + +   +DP +   + +D   +RQ+++NL+ NAVK+TA 
Sbjct: 247 DVLKVVSDTEDILRYKALEKGLSLNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYTAS 306

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V + +   SG     SI D G GI + +   V  +F Q        E G GLGL I 
Sbjct: 307 GG-VELKLK-KSGDMIKFSIIDTGIGIPKDKQSHVFEAFRQDEGG--RQEGGTGLGLAIC 362

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHESTQ 490
             ++   GG+  + S+  +G       P      +V      +  ES++
Sbjct: 363 VKLVEAFGGEIGLESEEGKGSTFWFTHPANFDGVKVKLQEKVETAESSE 411


>gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
 gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
          Length = 430

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 3/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  +  K+  +A+MSHE++TPL +I GF+E +    M   + ET + ++  I      
Sbjct: 188 ELKRLDQVKAELVANMSHEIKTPLTSIKGFAETLLDGAMD--DRETCRRFLTIIDSEADR 245

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LIN+ L LSR+E+    +S   I+L +++   + M+   A+ KNI++      +   
Sbjct: 246 MSRLINDSLTLSRLESQDRNISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDMK 305

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  +E  M Q++LNL+ NA+K+T  GG+V +T+    G   +IS+KD G GIA+  +P +
Sbjct: 306 IDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIK-DEGEDAFISVKDTGIGIAKEHMPRL 364

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +          G GLGL I + ++ +  G   + S+L  G E I  LP 
Sbjct: 365 FERFYRVDKGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPK 418


>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1002

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/251 (35%), Positives = 150/251 (59%), Gaps = 12/251 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + ++ + +E  ++A   NLAKS+FLA MSHELRTPLNAILGF++++         +   +
Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNR---DSSLSSQQQ 566

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+G I+RSG+HLL+LIN++L++SRIEAG+  L+++  +L ++++    +L L+A  K +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQ 401
           E+    D  L   +  DE  +RQ+I+NL+ NA+KFT + G + + +       +T     
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHV-GHIDLYLSVLSHQPYTKEMML 685

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + +KD G GI + E+ T+  +F Q     +S  +G GLGL I++      GG   ++S+
Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744

Query: 462 LREGVEVIAIL 472
           L +G      +
Sbjct: 745 LGQGSTFTCTI 755


>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1002

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/251 (35%), Positives = 150/251 (59%), Gaps = 12/251 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + ++ + +E  ++A   NLAKS+FLA MSHELRTPLNAILGF++++         +   +
Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNR---DSSLSSQQQ 566

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+G I+RSG+HLL+LIN++L++SRIEAG+  L+++  +L ++++    +L L+A  K +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQ 401
           E+    D  L   +  DE  +RQ+I+NL+ NA+KFT + G + + +       +T     
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHV-GHIDLYLSVLSHQPYTKEMML 685

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + +KD G GI + E+ T+  +F Q     +S  +G GLGL I++      GG   ++S+
Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744

Query: 462 LREGVEVIAIL 472
           L +G      +
Sbjct: 745 LGQGSTFTCTI 755


>gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
 gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
          Length = 1160

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 164/383 (42%), Gaps = 18/383 (4%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              L+          ++          + + +  + +  I ++I++    +   A+F   
Sbjct: 346 HLFLLPIQYQKQTLAVIEFGLYQQPEEKTMLLLNAISESIGVAINSALARIQMRALFEET 405

Query: 168 FPVVVALSTQAIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                 L +Q        +  +     L  +          L ++N ++     + ++  
Sbjct: 406 QQQAEELESQQEELRTTNEELMYKTDQLQASEEELRVQQEELRQTNAELEEKALQLEERN 465

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             +E A+       K  E  +  KS FLA+MSHELRTPLN+IL  + +++      L NE
Sbjct: 466 LSIEQAREAISLKAKELEVSSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NE 524

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +Y G IH +G  LL LIN+ILDLS+IE+G+ +L    +    +      +    A+ 
Sbjct: 525 DQIKYAGVIHNAGNDLLTLINDILDLSKIESGKVDLILEPVKPESVAYSMESLFSELAKS 584

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------- 395
           K+IE    +  +L  S+  D+  + QV  NLLSNA KFT   G++  ++           
Sbjct: 585 KHIEFSTLLGNNLPDSIITDQSRVEQVAKNLLSNAFKFTPEQGKITFSIQRAAAGTLFYS 644

Query: 396 -----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                TS     I++ D G GIAE +   +  +F Q   +      G GLGL I++ +  
Sbjct: 645 DQLKDTSEDILAIAVTDTGIGIAESKQKLIFEAFQQEDGSTSRKYGGTGLGLSISKELAN 704

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
             GG+  ++SK  EG      +P
Sbjct: 705 IMGGEIQLKSKPGEGSTFTFFIP 727


>gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
 gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
          Length = 1640

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 12/258 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+E++      +E ++RA+  + AKS FLA+MSHE+RTP+NAI+G S +     +G ++N
Sbjct: 1032 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1087

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + YI  +HRSG  LL++IN+ILD S+IEAG+  +       +   ++ I +++ +A 
Sbjct: 1088 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMESKAD 1147

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            EK +++   IDP L + +  D   + QVILNL+ NA+KFT   G V + V       + +
Sbjct: 1148 EKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFT-SHGNVTLNVTHLESNDRSV 1206

Query: 404  S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            S    + D G GI+E     +  +F Q          G GLGL I+Q ++   G +  + 
Sbjct: 1207 SMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLNISQKLVQAMGSKISVA 1266

Query: 460  SKLREGVEVIA--ILPNT 475
            S L +G E      LP +
Sbjct: 1267 SVLGKGSEFSFVLTLPRS 1284


>gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
 gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
          Length = 896

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    + 
Sbjct: 488 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DE 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   +  + + LL LINEILDLS+IE+G  E + + + L  + +E       R  
Sbjct: 544 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
           E  +E+  +       +  D+  + QVI NL+ NA KFT  G   H++ G    G+    
Sbjct: 604 E-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTSG---HISYGYRREGKYVAF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  ++  V   F + +       QG GLGL I ++I+   GG   + S++ 
Sbjct: 660 HVTDTGMGIAPDKVDRVFERFVKVNN----FAQGTGLGLSICKTIIERLGGNISVTSEVG 715

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G     +LP         E   E  Q
Sbjct: 716 KGTTFTFVLPLESTSKTEAEKKEEDNQ 742


>gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
 gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
          Length = 1427

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 13/285 (4%)

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +I     +     +      +  + E   A     E ++ AE  N AKS FLA+M
Sbjct: 723  EPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELANRAKSSFLAAM 782

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHE+RTPLN ++G  +++E   +        ++ +     S   L+ +I+++LD S+IEA
Sbjct: 783  SHEIRTPLNGVVGTIDLLEHTRL----ESNQRDMVRTARDSSLTLMGIIDDVLDFSKIEA 838

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
            G+ EL ++ +SL  +V  C+  +Q  A + NIE+    +P++  V  D   +RQ++LNL 
Sbjct: 839  GKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNLT 898

Query: 377  SNAVKFTA-----IGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             NA+KF+A       GRV V+              +S+KDNG G++      +   F Q 
Sbjct: 899  GNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQA 958

Query: 428  SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +      G GLGL I++ ++   GG   + S+L +G      L
Sbjct: 959  ESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVAL 1003


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 37/281 (13%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + EL  A+    + ++ AEE   AKS FLA+MSHE+RTP+N ++G + ++    +   
Sbjct: 375 RDVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDS- 433

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y   +  S + LL +IN+ILD S+IEAGR ++      L  ++R+   M+ ++
Sbjct: 434 ---EQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVK 490

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A+EK +E+   +DP++   V  D   +RQ+++NL+ NAVKFT   G V + V  +     
Sbjct: 491 AEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFT-EHGEVEIRVSKSEVVDQ 549

Query: 398 -----------------------GRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIA 430
                                  G  + +     I+D G GI + +  ++  SF Q   +
Sbjct: 550 RSEVSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDAS 609

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                 G GLGL I++ +    GG   + S   +G      
Sbjct: 610 TTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFT 650


>gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39]
          Length = 846

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 9/252 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +E  KRAE  N +KS FLA+MSHE+RTP+NAILGF ++++    G + +E  + Y+  
Sbjct: 349 ALEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDA 404

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I   G+ L+ LI++ILDLS+IEAG+ +L    ++L  +++E   +    A  K + +   
Sbjct: 405 IAAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQIN 464

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDN 408
           I+P++  +   DE  +RQ++ N++ NA+KFT  G   + V         +    I I D 
Sbjct: 465 IEPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADT 524

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+  +   +  +F Q          G GLGL I + +    GG+  + S+L  G   
Sbjct: 525 GMGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQLGLGSVF 584

Query: 469 IAILPNTRVLNF 480
               P+ ++   
Sbjct: 585 TFAFPDVQITQS 596


>gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium]
          Length = 834

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 148/273 (54%), Gaps = 1/273 (0%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +         A  D  I +  + ++     +  AE  N AK+ FLA+MSHELRTPLN+
Sbjct: 559 VQRDTQGRPERMAGTDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHELRTPLNS 618

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS+++  ++ GP+    Y EY  DI+ +G HLL+LIN+ILD+SRIE     L+E  I
Sbjct: 619 IIGFSDILVNQSFGPMGVPEYVEYARDINSAGSHLLSLINDILDVSRIEVEALSLNEQRI 678

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
               +   C  ++  RA+   + +   +     + ++ADE+ ++QV+LNLL+N++KFT  
Sbjct: 679 DAAHMANSCQRLVLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANSIKFTEP 738

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V +            ++ D G GIA  +I   +++FGQ   +     +G GLGLP++
Sbjct: 739 GGTVTLKGMLDEEGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTRRYEGAGLGLPLS 798

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           + ++  HGG   + S+   G  V    P  R +
Sbjct: 799 KKLVELHGGGLSLESQPGVGTTVTIRFPKERTV 831


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+E + AK  FLA+MSHE+RTP+NAI+G S +     +    N
Sbjct: 577 VTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHLALNADL----N 632

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  I  + + LL +IN+ILD S++EAG+    +    L +++     ++ ++A+
Sbjct: 633 PKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDNLTNIIAVKAE 692

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           EK +E    IDP +  ++  D   + QV++NL  NA+KFT   G V V V        G 
Sbjct: 693 EKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDS-GEVVVGVKLLNKSEDGL 751

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +++D+G G+++ +   +  SF Q   +I     G GLGL I++ ++   GG+  + 
Sbjct: 752 NLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVT 811

Query: 460 SKLREGVEVIAIL 472
           S   +G      L
Sbjct: 812 SDEGQGSTFSFTL 824


>gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1362

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 179/378 (47%), Gaps = 10/378 (2%)

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-----IYKSATLLIALSISALSNF 157
           +  ++   L G++ + L    ++   P   +P         I  +    + +S+ A    
Sbjct: 433 LRRFQRRHLEGELGVILASGTVSCYTPQEGSPLRFATSFGEIVPAEIATVPISVDAEIRA 492

Query: 158 MLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS-FFTYITYHLFKSNVKIL 215
            +  A    F P V   L    +         L+G     L+         L + + +++
Sbjct: 493 FVSIASERPFPPKVHEILELVQMPLGAAFARILSGEDVRLLANELALKNEELTQQSEELV 552

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               E      EL     + D  +++ EE    KS FL++MSHELRTPLN++L  S V+ 
Sbjct: 553 QQSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLA 612

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           ++    L  +  K Y+  I R+G+HLL+LIN+ILDL++IE+GR E+    +SL  +  E 
Sbjct: 613 VQGGSRLTEDE-KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEV 671

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L + A+EK I I  +   +L +   D K +RQ++ NL+ NAVKFTA  G V V +G 
Sbjct: 672 VDGLSVLAREKGIAISLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAE-GAVTVRLGA 730

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    + ++D G GIA   + T+   F Q   +   + +G GLGL I +      GG 
Sbjct: 731 -EGEEFLVEVEDTGIGIAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGD 789

Query: 456 FLIRSKLREGVEVIAILP 473
             +RS+L +G      LP
Sbjct: 790 VSVRSELGKGSVFTLRLP 807


>gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1765

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 14/301 (4%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
            ++   +                 ++T ++          ++    ++   E  K LSDE 
Sbjct: 968  LVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTE-LKLLSDEL 1026

Query: 238  --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               +  A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I 
Sbjct: 1027 LVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL----DKKQKNYLEKIE 1082

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            R+ Q LL++IN+ILD S+IEAG+ ++   +  L  ++ +   M   RA +K IE+   + 
Sbjct: 1083 RASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVA 1142

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
            P++   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G 
Sbjct: 1143 PNVPRHLLGDPLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQNDDVVLRFSVRDSGI 1201

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+ + +   +  SF Q   +      G GLGL I++ ++   GG   + S+L  G     
Sbjct: 1202 GLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFF 1261

Query: 471  I 471
             
Sbjct: 1262 T 1262


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 25/381 (6%)

Query: 116  AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              G    ++ L     +   +LT +   T  IA+ ++ ++  M    +      +   L 
Sbjct: 1111 FEGAITGVIELASFHYFNEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAQELQ 1170

Query: 176  TQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-AELEVAKS 233
            TQ          +        A            +   + L  +A    L   E+E   +
Sbjct: 1171 TQQGELRETNQRLEQQAQSLKASEELLKKQQEQLQQTNEALEEKARLLSLQNEEVERKNA 1230

Query: 234  LSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
              ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++       L    
Sbjct: 1231 EIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNVENNLT-PK 1289

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              EY   IH SG  LL LIN+ILDL++IE+G   +    + L ++  +     +  A +K
Sbjct: 1290 QVEYAATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDRAFRQIAHDK 1349

Query: 347  NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRG 400
             ++     DP L   ++ D K ++QV+ NLLSNA KFTA  G+V + V     GW+    
Sbjct: 1350 GLDFEINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAK-GQVSLEVEPAYQGWSQDHE 1408

Query: 401  QY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       S+ D G GIA  +   +  +F Q          G GLGL I++ I    
Sbjct: 1409 ILNQAELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLSISREIARLL 1468

Query: 453  GGQFLIRSKLREGVEVIAILP 473
            GG+  + S+L  G      LP
Sbjct: 1469 GGEITVISRLGHGSTFTLYLP 1489


>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1282

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRAE 243
           G     L     IT    +  ++      E+      +  A    +          + AE
Sbjct: 697 GTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQLEAAIVRAERLAREAE 756

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + AKS+FLA+MSHE+RTP+NAI+G + +         +++    ++  +  S + LL 
Sbjct: 757 SASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTR----DDDKRGRFLDTVRHSAESLLG 812

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           L+N+ILD S++EAG+ +LS +  S   ++ E +  LQ+ A EK + +   I P+L   + 
Sbjct: 813 LLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLAMDIAPNLPPCLV 872

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGE 416
            D+  +RQ++LNL+ NA+KFTA  G + + +         S    + ++ D G GIAE +
Sbjct: 873 GDDLRLRQILLNLVGNAIKFTAA-GSITLRITQEQPSSGGSEPLIHFTVIDTGIGIAEEK 931

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +  SF Q   +      G GLGL I + ++   GG+  + S++ +G     ++P   
Sbjct: 932 RALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRINQGSAFHVLVPLPV 991

Query: 477 VLNFIPED 484
               +P D
Sbjct: 992 CDQPLPAD 999


>gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 982

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 136/265 (51%), Gaps = 9/265 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                      +    AE  N AKS FL++MSH++RTP+NAI+GF+ +            
Sbjct: 449 TADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNIDDKN--- 505

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+Y+     S  HLL+LIN++LD+SRIE+G+  L E  ++L D++ +   ++  +   
Sbjct: 506 RVKDYLAKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYA 565

Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399
           K +E++   +D +   V+ D+  + QV+LNLLSNA+KFT  GG V V V   +G      
Sbjct: 566 KQLELYMDAMDVTDEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRVRQLAGAVRGCG 625

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                +KDNG G+++     +   F +   +  S  QG GLG+ I ++I+   GG   ++
Sbjct: 626 QYEFRVKDNGIGMSQEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQ 685

Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484
           +   +G E I  +P        P +
Sbjct: 686 TAQGKGSEFIIRVPMRAQAEHRPVE 710


>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 919

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +LI ++ + L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IAISLLMMLICMACAVLFAWRLMRDV---TAPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL++IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTP----TQRDHLNTIERSANNLLSIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   A +K +E+   +   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHI 516


>gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
 gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
          Length = 914

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    + 
Sbjct: 506 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DE 561

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   +  + + LL LINEILDLS+IE+G  E + + + L  + +E       R  
Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
           E  +E+  +       +  D+  + QVI NL+ NA KFT  G   H++ G    G+    
Sbjct: 622 E-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTTG---HISYGYRREGKYVAF 677

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  ++  V   F + +       QG GLGL I ++I+   GG   + S++ 
Sbjct: 678 HVTDTGMGIAPDKVDRVFERFVKVNN----FAQGTGLGLSICKTIIERLGGNISVTSEVG 733

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G     +LP         E   E  Q
Sbjct: 734 KGTTFTFVLPLESTSKTEAEKKEEDNQ 760


>gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
 gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
          Length = 1316

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 153/283 (54%), Gaps = 10/283 (3%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             L  Q ++  ++ EL  AK ++++  K AEE   AK +FL++MSHE+RTP+NAI+GF+ V
Sbjct: 904  ALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQQFLSNMSHEIRTPMNAIIGFTNV 963

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +    +    NE  KEYI  I  SG+ L+ LIN+ILDL+++EAG+     S   L   V 
Sbjct: 964  VMKTKL----NEAQKEYINAIKVSGESLIILINDILDLAKVEAGKMVFEHSPFRLFSSVS 1019

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + + + + + QEKN+ + ++ D ++  +   D   +RQ++LNL+SNAVKFT   G++ V 
Sbjct: 1020 DMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLRQIMLNLISNAVKFTNA-GKITVR 1078

Query: 393  VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V              S+ D G GI E  +  +  +F Q +        G GLGL I + +
Sbjct: 1079 VDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQIAPETTRLNGGTGLGLAIVKQM 1138

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            +   GG   ++SK+ +G      L   +V + +  +N+    +
Sbjct: 1139 VKLQGGNVKVKSKVDKGSTFSFSLSFKKVKSLVAIENNHKVDF 1181


>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
 gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
          Length = 727

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 585

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GF+E +    M   +  T + ++  I +  + 
Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--KDERTLEHFLSIIWKESER 408

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++LDLS+IE   ++L    + L  ++ E  IM Q +A+EK I+       S+  
Sbjct: 409 LQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFRMHAAKSI-Y 467

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++Q+ +NL++NA+ +T  GG+V V +         + +KD G GI E EIP +
Sbjct: 468 MEGDANRLKQIFINLITNALTYTPKGGQVEV-IAEEQEEETLVHVKDTGIGIEEAEIPRI 526

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   ++S + +G       P  
Sbjct: 527 FERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPKQ 581


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1233

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +       +  +   + S        I   +  +    E +  AE  N+ KS FLA+MS
Sbjct: 671 LWVLSRGRVVEFTADGMPSRMLGTHKDITRQKSNEVALLEAKHDAELANMYKSEFLANMS 730

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+NAI+G  ++     +        ++Y+     S + LL +IN+ILD S+IEAG
Sbjct: 731 HEIRTPMNAIIGMLQLASRTQLTL----QQQDYLNKAGFSAESLLRIINDILDFSKIEAG 786

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376
           + EL     SL  ++   I M  L AQEK +E+       +  ++  D   + QV++NLL
Sbjct: 787 KLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLL 846

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNAVKFT   G + +       R   IS    ++D G GI+  +   +  +F Q   +  
Sbjct: 847 SNAVKFT-QDGEIELGCEDVGERDTQISLKFWVRDTGIGISREQQANLFDAFSQADGSTT 905

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I++ +++  GG   + S+ ++G      L
Sbjct: 906 RQYGGTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTL 945


>gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1853

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 137/297 (46%), Gaps = 10/297 (3%)

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244
            +     + ++      +   L +SN ++ +  AE ++    LE   S  +   +  EE  
Sbjct: 1387 VGFVLNMISSNMRMEGLLLELKRSNAELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1446

Query: 245  -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                  +  KS FLA+MSHELRTPLN++L  S+++     G L  E  K +   ++ SG 
Sbjct: 1447 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVK-FASTVYTSGH 1505

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             LL LINEILDLS+IEAG+  +      L  +  +     +  A+ K +    ++ P L 
Sbjct: 1506 ELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMAPDLP 1565

Query: 360  -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
              +  D   ++Q++ NL+SNA KFT   G V + V   +G     +++D G GI   +  
Sbjct: 1566 DRIHTDPTRLQQILKNLISNAFKFTER-GEVVLEVSPAAGGALAFAVRDTGIGIPADKQK 1624

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +  +F Q          G GLGL I++ I    GG   + S    G     +LP  
Sbjct: 1625 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLPAR 1681


>gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 585

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 125/234 (53%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  FLA++SHEL+TP+ +I GFSE +    M   N +  + ++  I +  + 
Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--KNQKFCEHFLHIILKESER 410

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           + +LI ++LDLS+IE   ++L+   + + D++ +  ++L  +AQ+K I +         S
Sbjct: 411 MQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMD-AMQHVS 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++Q+ +NL+ NA+ +T +GG V V++ +   +  Y+ + D G GI++ EIP +
Sbjct: 470 VIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSL-FEDEQNAYVQVADTGIGISKEEIPRI 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + SK+ EG      LP 
Sbjct: 529 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALPK 582


>gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 815

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 16/342 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYIT 204
           + ++ + + +            P         +    ++   + G+L  A     +    
Sbjct: 285 VMVTKAPVISNHPARDPRAGGIPAGHPPLRSFLGLPIMMGDHMVGLLGLANRPGGYDEAL 344

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               +  ++  +   E   +       +      ++ AEE N AKSRFLA++SHE+RTP+
Sbjct: 345 VAFLQPFLQTCAGIIEAHRVEQLQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPI 404

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            A+ G+SE++       +     ++ +  I R+ +HLL L+++ILD S+IEAG   +   
Sbjct: 405 AALCGYSEMVLE---PQMEEPERRQTLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHC 461

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            +S   I+ + +  +  RA+ K I I  +I   +  ++  D   +RQ++LN LSNA+KFT
Sbjct: 462 PVSPRWILEDLLTTMGGRARSKGIAIHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFT 521

Query: 384 AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
               R+ + +             +      +++D GPGIA   +  +   F Q   +I  
Sbjct: 522 DRDKRIDLILQVEPVPASGTLHSAANRLVFTVEDQGPGIAPENLSRLFQPFWQVDGSITR 581

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              G GLGL I+Q +    GG   + S++  G      LP  
Sbjct: 582 RYGGTGLGLSISQRLAELLGGVIEVESEVGRGSRFRFALPLQ 623


>gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 940

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    ++   +     ++AE ++ AKS FL+ MSHE+RTP+NAI G ++++ +E   P  
Sbjct: 542 LTYRSKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDG 601

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E +  IH S Q++L+LIN+ILD+S+IE G+  +     SL +++   I M++++A
Sbjct: 602 A---REKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQA 658

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           +EK I      +     V  D   +RQV+ NLLSNA KFT  GGRV +TV       S  
Sbjct: 659 EEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTG 718

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + S+KDNG GIA+     +  +F Q   +  +  +G GLGLPI+ SI+   GG  ++ 
Sbjct: 719 EYFFSVKDNGIGIAQDRQKQIFEAFEQLGAS-SARSEGTGLGLPISSSIIKAMGGNLMVE 777

Query: 460 SKLREGVEVIAIL 472
           S+  +G E    L
Sbjct: 778 SQTGKGSEFYFRL 790


>gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
 gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
          Length = 940

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    ++   +     ++AE ++ AKS FL+ MSHE+RTP+NAI G ++++ +E   P  
Sbjct: 542 LTYRSKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDG 601

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E +  IH S Q++L+LIN+ILD+S+IE G+  +     SL +++   I M++++A
Sbjct: 602 A---REKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQA 658

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           +EK I      +     V  D   +RQV+ NLLSNA KFT  GGRV +TV       S  
Sbjct: 659 EEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTG 718

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + S+KDNG GIA+     +  +F Q   +  +  +G GLGLPI+ SI+   GG  ++ 
Sbjct: 719 EYFFSVKDNGIGIAQDRQKQIFEAFEQLGAS-SARSEGTGLGLPISSSIIKAMGGNLMVE 777

Query: 460 SKLREGVEVIAIL 472
           S+  +G E    L
Sbjct: 778 SQTGKGSEFYFRL 790


>gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 784

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 5/277 (1%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259
           +     +    +   Q  +  L  +      ++D   E + RAE  N AKS FLA++SHE
Sbjct: 506 LVDSEKRLKATVTDLQKSRQTLEVQARQLVEMADKYQEEKTRAEAANKAKSEFLANISHE 565

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFS+++  E  GP+  + Y +Y  DI+ SG +LLN+IN+ILD+S+IEAGR 
Sbjct: 566 LRTPLNAIIGFSDIMTQEMFGPVGTDRYSDYCKDIYSSGTYLLNVINDILDMSKIEAGRM 625

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            +    ++  +   +   ++   A EKNI +   +  ++ SV AD++ ++Q++LNLL+NA
Sbjct: 626 TIETETVNASESAEDASRIVTGAATEKNITVTTDVVENV-SVHADKRALKQILLNLLANA 684

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G V +      G   +  + D G GI+E +I  +   F Q         QG G
Sbjct: 685 VKFTPDNGTVTLKARPR-GDKLHFEVIDTGIGISERDIERLAQPFVQVENQFTKTHQGSG 743

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL IA+S++  HGG  +I+S++++G  V   LP   
Sbjct: 744 LGLAIARSLVELHGGALVIKSEVKKGTTVSFTLPLAE 780


>gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
          Length = 842

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/289 (35%), Positives = 154/289 (53%), Gaps = 4/289 (1%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             M A  ++          ++  ++ +  A  +    +L       +  + +AE  N AK
Sbjct: 542 LVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAESANKAK 601

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLNAI GFSE++  E  GPL ++ YK Y  DIH SGQHLL LIN+IL
Sbjct: 602 SEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDIL 661

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S+IEAG+  L   ++ L D+  + + +++ RA+   +++     P L  + AD + ++
Sbjct: 662 DMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEADYRAVK 720

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           QV+LNLLSNA+KFT   G V V V            +S+ D G GIA+ ++  +   F Q
Sbjct: 721 QVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQ 780

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                    QG GLGL + +S++  H G   + S   EG  V   LP  
Sbjct: 781 VESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829


>gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 11/292 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   + ++ V            I E +  ++L  + ++ AE  N +KS FLA+MSHE+RT
Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRT 294

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G  ++       P       +Y+  I  S   LL LIN+ LDL+R+E G+  + 
Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAID 352

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           +    L DI+ +   ++  RA EK +++   + P++   +  D   + QV++NL SNA+K
Sbjct: 353 QIPFDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           F+   G V +               ++++D G GIA  ++ T+L  F Q   +      G
Sbjct: 413 FSDK-GEVSLNFEMADSTADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDG 471

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486
            GLGL IA  ++   GG+  + S+  +G       P  R+      IPE   
Sbjct: 472 TGLGLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQRKASIPEQED 523


>gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 627

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 177/383 (46%), Gaps = 19/383 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  ++           I  +   LI +  SALS   L   V ++  P  +   + A    
Sbjct: 234 MSDVISRHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGG 293

Query: 183 HVLDISLAGMLATA--------LSFFTYITYHLFKSNVKILSCQAEKD-----DLIAELE 229
               +        A         + F ++          ++S   E D       + + +
Sbjct: 294 EARSVEFRVRREVARDDRGRPSAAEFIWLEMRCRPFETGVVSAAGEADVVAVMRDVTDRK 353

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +   +E R  A   +  KSRFLA+MSHELRTPLNA++GFS++I  E    L  E  KE
Sbjct: 354 QQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPERRKE 413

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I+ SGQHLL+++N ILD+S+IE+G +E++    +    +  C  +L L+A+E  I+
Sbjct: 414 YAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARENGID 473

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +   +L  +  D +  +Q++LNL+SNA+KFT  GG V V      G    + + D G
Sbjct: 474 LVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDA-MVEGARLVLRVSDTG 532

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA  ++  +   F Q     +   +G GLGL I +S++  HGG   ++S++  G  V 
Sbjct: 533 VGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKSEVDRGTTVT 592

Query: 470 AILPNTR-----VLNFIPEDNHE 487
             LP  +     V    P    E
Sbjct: 593 VSLPLAQPALTNVTPLAPPQPTE 615


>gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42]
 gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42]
          Length = 579

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   + +   +++  I +  + L +L
Sbjct: 349 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDEKALSDFLSIILKESERLQSL 406

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS++E   + +   +     I+ E   +L+ +A+EK I     +      V  D
Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL +NA+ +T   G V ++V         I + D G GI + EIP +   F
Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISV-HVKETVVDIKVSDTGIGIQKEEIPRIFERF 525

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  + S+  +G      L
Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTL 573


>gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 812

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 27/344 (7%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI-------TYHLFKSNVKILSCQA 219
              + + + T   ++  +L +  A        F   +       T  L ++  ++ S   
Sbjct: 354 IVAIFLGVYTSRWIAEPILQLIKASEAIANGEFTHRVDIKKIKETEQLSQTFNQMSSQLQ 413

Query: 220 EK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           E  + L   +E   +   + ++ AE  N AKS+FLA MSHELRTPLNAILGF++++  + 
Sbjct: 414 ELFETLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQI 473

Query: 279 --MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 N   +++++  I RSG+HLL LIN++LD+S+IEAG+  L+ +   L  ++    
Sbjct: 474 SLENNHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLE 533

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            M  +RA  + +++     P+L   + +DE+ +RQV++NL+ NAVKFT   G V +    
Sbjct: 534 EMFSIRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFT-ENGSVTLHSQV 592

Query: 396 TSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                Q             +++D GPGIA  +I  +   F Q     K   QG GLGLPI
Sbjct: 593 IDPPNQIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPI 651

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +Q  +   GG   + S L  G      +   RV    PE+   S
Sbjct: 652 SQQFVQLMGGDISVSSTLGVGSVFKFKI---RVSLGYPEEIASS 692


>gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 606

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 130/268 (48%), Gaps = 10/268 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +     ++  AE    +      +      ++ AE  + AKS FLASMSHE+RTP+N +L
Sbjct: 191 RDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTPMNGVL 250

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++    ++    +E  +EY+  +  S + LL+LIN+ILD S+IEAG  EL +    L
Sbjct: 251 GMLDLAMTTSL----DEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQVFRL 306

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              +     M   RA E+N+E    I P +   +  D   +RQ+++NLL NA KFT   G
Sbjct: 307 SKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFTDQ-G 365

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           +V ++V              S++D GPGI E     +  SF Q   +     QG GLGL 
Sbjct: 366 QVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGLGLA 425

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + +    GG   +RS   EG   +  
Sbjct: 426 ICKRLTGLMGGDIKVRSTPGEGSTFVFS 453


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + +K A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 LTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++   I ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT   G + ++        Q  
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQ-GEIVISARVRQLNEQQV 757

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + ++KD G GI + ++  +  +F Q   +I     G GLGL I++ ++   GG+    
Sbjct: 758 TLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEISAH 817

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 818 SEEGKGSTFEFS 829


>gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
 gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
          Length = 621

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRA 242
             +  G L    +  T +        +K    +    +L    E    L+   +  + RA
Sbjct: 310 RPTAEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNLERSQEQLSELARKYEAEKIRA 369

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  + AKS FLA+MSHELRTPLNAI GFSE++  E  GPL +  Y++Y  DI  SGQHLL
Sbjct: 370 EGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQHLL 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LIN+ILD+S+IEAG+  L     SL +I  + + +++ RA+   + +       L  V 
Sbjct: 430 ALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTLVLDF-VELPEVE 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPT 419
           AD + ++QV+LNLLSNA+KFT  GGR+ +          +   +S++D G GIA  ++  
Sbjct: 489 ADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDLER 548

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F Q        +QG GLGL + ++ +  HGG   ++S   +G      LP  +
Sbjct: 549 LARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQ 605


>gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 1004

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 12/249 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE  + AK+ FL  MSHELRTP+N I+G  E++    +    +E  + YI
Sbjct: 750 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTEL----DEDQQNYI 805

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  S   LL+++NEILD S+IE G   L+   I L  ++   + +   +A+EK + + 
Sbjct: 806 HILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKEKGLSLS 865

Query: 352 QKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYIS 404
             I+ +     +  D   +RQV++NL+SNA+KFT   G + + V       T        
Sbjct: 866 FNINSANVPDVIIGDALRLRQVLVNLISNAIKFTHE-GSITLNVEGLRRTGTQEFTLAFQ 924

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA      + TSF Q   ++     G GLGL I++ ++   GG   + S+   
Sbjct: 925 VKDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENV 984

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 985 GSSFYFTIP 993


>gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 938

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 13/270 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q   D+L A +        + + RAE  N AKS FL+ MSHELRTP+NA++G  +++ 
Sbjct: 372 ELQKANDELEARVTQRTQEFQQAKVRAERANQAKSEFLSMMSHELRTPMNAVIGSLDLL- 430

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   N      I     S  +L+ ++N+ILD+++IE+G+ +L +   S+ +++   
Sbjct: 431 ---TLSKQNPESMSLIETATTSATNLIYILNDILDINKIESGKMQLEQRDFSITEVIDNV 487

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA----IGGRVH 390
           + +    A +K + +    DP +  +   D   +RQ++ NLL NA+KFT       G + 
Sbjct: 488 VQVFLPLAHKKRLNLHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFTHTVEGKPGEIR 547

Query: 391 VTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +    +           SI DNG GI +     + T F Q   +      G GLGL I+ 
Sbjct: 548 LITNISEHNDIIYKISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKYGGTGLGLAISG 607

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++ +  GG+  + S   +G     +LP  R
Sbjct: 608 NLTSMMGGEIKLNSTPEQGSTFTVVLPFWR 637


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 134/252 (53%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +VA+    + ++ AE  N AKS FLA+MSHE+RTPLN I+G +++++ E +     
Sbjct: 379 INDKKVAEQELIKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENLPKH-- 436

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+  ++ +  HLL+LIN+I D SRIE+G  ++     SL D + E + +L  RA+
Sbjct: 437 --VVEYVKHLNMASHHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAK 494

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           EKNIE+   +DP +   +  D   ++Q++ NLL NA+KFT +G     V +         
Sbjct: 495 EKNIELTVFVDPLIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSVD 554

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               IKD G GI+  +   + T F QG  ++     G GLGL I + ++    G     S
Sbjct: 555 ILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFIS 614

Query: 461 KLREGVEVIAIL 472
           +  +G      L
Sbjct: 615 EPGKGTTFYVTL 626


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1157

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 5/377 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            +  +      +       K+   ++ +SI+   +  + + +F         L  Q    
Sbjct: 360 GVFEIAFQNGLSSRNEGYLKAIADIVGVSINTAQSRTIMHDLFEEVQQQAEELEAQQEEM 419

Query: 182 MHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +  +    ML  +          L  +N ++    +  ++    +E A+    +  
Sbjct: 420 RVTNEELMKKTEMLQASEEELRVQQEELRTTNAELEEKASLLEEKNQAIEEARRSISQKM 479

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  E     KS FLA+MSHELRTPLN+IL  + +++      L  +  K Y   I  +G 
Sbjct: 480 RELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQIK-YSTVIFNAGN 538

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LIN+ILDLS+IE+G+ E+    + + +I+++   +    A+ KNI    + + ++ 
Sbjct: 539 DLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNITFTTQQNNNVP 598

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEI 417
             +  D    +QVI NLLSNA KFT+  G V V       G+   +SIKD+G GI   + 
Sbjct: 599 EYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKDSGIGIPYDKQ 658

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q   +      G GLGL I++ +    GG   ++SK  EG E   +LP   V
Sbjct: 659 KLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKSKPGEGSEFTLLLPLEGV 718

Query: 478 LNFIPEDNHESTQYKCY 494
           L    +D       K +
Sbjct: 719 LATPIDDADNVPTLKSW 735


>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 788

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           + +       +       +         I  ++ A+      ++ AEE   AKS FLA+M
Sbjct: 5   IVWVHAAGKLVRDEANGAIRFMYGAYQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANM 64

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NAI+G S +     +    ++  + YI  +HRSG++LL +IN+ILD S+IEA
Sbjct: 65  SHEIRTPMNAIIGMSHLALQTKL----DKKQRNYIEKVHRSGENLLGIINDILDFSKIEA 120

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+  +      L D++     ++ L+A+++ +E+   + P +  ++  D   + Q+++NL
Sbjct: 121 GKMTMESIDFRLEDVMDNLANLVGLKAEDRGLELLFNVAPDIPSALIGDPLRLGQILINL 180

Query: 376 LSNAVKFTAIGGRVHVT---VGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +NAVKFT   G + V    V  +  +   +  ++D+G G+   +   +  SF Q   + 
Sbjct: 181 GNNAVKFTEK-GEIIVGAELVERSEDQAELHFWVRDSGIGMTPEQCGKMFKSFSQADTST 239

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--------PNTRVLNF 480
                G GLGL I+++++    G+  + S+  +G      +        P  RV + 
Sbjct: 240 TRKYGGTGLGLAISKTLVELMDGRIWVESEAGKGSTFHFHVRVGVQSHPPLRRVFSP 296


>gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1310

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 8/286 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +   ++    A+   L   L+ A+  +D  R RAE    AKS FLA+MSHE+RTP+N I+
Sbjct: 589 RFEAELQRQAADMCALAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIM 648

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +E++    +     E  +++   I  S   LL +IN+ILD+S++EAGR  +       
Sbjct: 649 GMTELLFDTPL----TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDP 704

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+V   + +L  RA EK IEI   IDP L   +  D   +RQ+++NL+ NAVKFT  G 
Sbjct: 705 ADLVEGVVELLTPRAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGS 764

Query: 388 R-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             V +     +     +  ++ D G GI    +PT+   F Q   +I     G GLGL I
Sbjct: 765 VAVELEAREATDAHLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAI 824

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + +    GG   + S+L  G   +  LP         ++  +  Q
Sbjct: 825 CRQLSELMGGSIAVESRLGSGSRFLVDLPLALPDEVRDDELSDGMQ 870


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 6/274 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +     ++     E +       E     +  +  K  FLA+ SHELRTPLN ++G S
Sbjct: 554 IAVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLS 613

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E +     GPL  E  ++ +  I +SG  L  L+N+ILD S++     EL    + L +I
Sbjct: 614 ESMLDGVGGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREI 672

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V   +++ +     K+IE+  +I     +V ADE  ++Q++ NL+ NA+KFT   G V +
Sbjct: 673 VEVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDS-GTVKI 731

Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           T        +     I+I D G GI   +   +  SF QG  +      G GLGL I + 
Sbjct: 732 TASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQ 791

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           ++  H G+  + S +  G      LP +  +   
Sbjct: 792 LVELHQGKIWLDSVVDSGSTFSFTLPISEEIPET 825


>gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 3557

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 157/302 (51%), Gaps = 13/302 (4%)

Query: 182  MHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              ++ ++L+G++       +       + +     ++ +   + L   +    +   + +
Sbjct: 3034 GSLVPVALSGLIVERNGEQYIWSCVEDISQRKQAEVALKEANNQLEQRVLERTAQLQQAK 3093

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            + AEE N AKS FLA+MSHELRTPLN I+G++++++     P  +  +K  I  I++ G 
Sbjct: 3094 ELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQR---SPQLSSDHKSNIQVIYQCGS 3150

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            HLL LI +ILD+S+IEAGR EL      L   ++  + + +++A++K++    +   SL 
Sbjct: 3151 HLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERPSSLP 3210

Query: 360  SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIA 413
            +V   D+K +RQV+LNLL NA+KFT   G +   V +TS            I+D G GI+
Sbjct: 3211 TVINTDQKRLRQVLLNLLGNAIKFT-SLGSIKFRVSFTSSRTNHNGFLQFEIEDTGVGIS 3269

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              ++  +   F Q   ++    +G GLGL I+Q ++   G Q  + S L  G     ILP
Sbjct: 3270 AEQLDRIFLPFEQV-GSLSQKAEGTGLGLAISQKLLQMMGTQLTVESTLGVGSIFSFILP 3328

Query: 474  NT 475
              
Sbjct: 3329 IA 3330


>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
 gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
          Length = 933

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S +  F L + V     P+    +    +    LD+ + G      
Sbjct: 174 IFSACLVLIMGLLLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 227

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 228 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 343

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E + +    A EK +EI  K+DP + + +  D 
Sbjct: 344 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDP 403

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + ++V   S R   +     ++D G GI+E +   + 
Sbjct: 404 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLF 462

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 137/271 (50%), Gaps = 9/271 (3%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +  + +         I   +  +      RK AE  N AKS FLA+MSHE+RTP+N +LG
Sbjct: 383 AAAQDVREFYFSGQDITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLG 442

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              ++   T+ P    + +E  G    SG+ LL +IN+ILD S+IEAG+  +S     L+
Sbjct: 443 AVGLLLNTTLTP----SQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLL 498

Query: 330 DIVRECIIMLQLR-AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             V E   M+ ++ A++ N+ +  +  P++   V+ D   +RQV++NL +NA+KFT  G 
Sbjct: 499 QAVEEVAGMVAMQPARKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGH 558

Query: 388 R-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             + V     S       IS++D+G GIA  ++ ++   F Q   +      G GLGL I
Sbjct: 559 VLIDVEAEALSEDEVSLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAI 618

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++ ++   GG    +S++  G      LP  
Sbjct: 619 SKQLVQLMGGTIAAKSRVGAGSTFWFTLPLA 649


>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1000

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 21/275 (7%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I   ++ +    + ++ AE  N AK  FLA+MSHE+RTP+NA+LG  E++   ++  
Sbjct: 418 LQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSL-- 475

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +  +EY+   H S + LL++I+++LD S+IE  + EL + +  L  ++   I +L  
Sbjct: 476 --TDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSG 533

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----- 395
           +A  K +++   I+  L  +   D   ++QV+ N+L NA+KFT   G + ++V       
Sbjct: 534 KAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKK-GEIALSVEVYMPSE 592

Query: 396 ----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                              +KD G GI   ++  +   F Q   ++     G GLGL I+
Sbjct: 593 RNSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAIS 652

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             ++    G+  + S++ +G      +   R  + 
Sbjct: 653 SQLVELMEGRIWVESEVGKGCTFYFTVRVKRGESS 687


>gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 736

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 10/273 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            LF + +  L         I + E      D +R++ ++  + K +FLA+MSHE+RTP+N
Sbjct: 189 MLFFACLSSLLSFLYITSRIYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMN 248

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LGF+ +++ + +    NE  +EY+  I  +G++LL++IN+ILD+S+IE+G   L   +
Sbjct: 249 AVLGFTHLLQQQPL----NEKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVS 304

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTA 384
            SL  ++    +M Q +AQEK +++   ID  +  + + D   + QV++NL++NA+KFT 
Sbjct: 305 FSLRGMMHSLQLMFQPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTP 364

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V V    G         +I D G GI+  ++ T+   F Q    I     G GL
Sbjct: 365 Q-GQVTVRVSPVGGNESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGL 423

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I + ++    G   + S+L +G   +  LP
Sbjct: 424 GLTIVKQLVELQHGTISVESELGKGSTFLVQLP 456


>gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 882

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 9/262 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI   +  +      ++ AE  N AKS FLA+MSHE+RTPLN I+G +E++    +    
Sbjct: 363 LIQAQKDHERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSRL---- 418

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N + K+ + DI  S   LL LIN+ILDLS+IE+G   LS S   + + V E + M+  +A
Sbjct: 419 NSSQKDILSDIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKA 478

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
            ++ +E+   + P +  S++ DE   +Q+++NLLSNAVKFT   G V V V   +     
Sbjct: 479 LKQQVELRATLSPDIPDSLYIDEFRFKQILMNLLSNAVKFT-QDGSVSVVVKLMNEGEKA 537

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + S+ D G GI E ++  +   F Q   +I     G GLGL I + I    GG     
Sbjct: 538 YLHCSVVDTGVGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITAS 597

Query: 460 SKLREGVEVIAILPNTRVLNFI 481
           S    G     ++P   V+   
Sbjct: 598 STPGLGSRFSFVIPAQSVVETS 619


>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 792

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 6/279 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                  L      +  + E +  ++    T + A   N AKS FLA+MSHE+RTP+N +
Sbjct: 382 ISDENGNLDRFIAIERDVTEYKRLENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGV 441

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++E E      +  ++E +  I  SG HL++++N+ILD+S+IE     L  S   
Sbjct: 442 LGLTQILEKEI----TDPNHREVLQLILSSGNHLVSILNDILDISKIENEALTLEHSPFK 497

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +I+I+       Q    EK +        P  +    DE  +RQ++LNL+ NA+KFT   
Sbjct: 498 MIEILSPVKNTYQSLCSEKGLLFEVIDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQK- 556

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + ++V    G      +KD G GI    + +V   F Q   +      G GLGL I +
Sbjct: 557 GSIVISVEVNVGGMCRFEVKDTGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVK 616

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           S++   GG+ L+ SK+  G     +LP   ++N    + 
Sbjct: 617 SLVELMGGEILVDSKVGRGSTFTVLLPLPSIVNEKKNEE 655


>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1095

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 17/295 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + +   +    Q E       LE      +  R  AEE   AKS FLA+MSHE+RTP
Sbjct: 288 AVGVVRDITEKKEAQEELQRHGRNLERKNVELNAARLEAEEATRAKSEFLANMSHEIRTP 347

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NAI+G S +     +         +Y+  +H S Q LL +IN+ILDLS++EAG+ E+  
Sbjct: 348 MNAIIGLSYLCLQTDLNN----KQHDYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEH 403

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              +L D+      ++ ++AQEK +    +    +   +  D   + Q+++NL  NA+KF
Sbjct: 404 IPFALQDVTDHLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKF 463

Query: 383 TAIGGR-VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           T+ G   + + +   + +       + +IKD G G+   +I  +  +F Q   +      
Sbjct: 464 TSQGQVMLQIVLAEQTEQTEQTARIHFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFG 523

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFIPEDN 485
           G GLGL I++ ++   GG+  + S+  +G   +  +      P+      +P  +
Sbjct: 524 GTGLGLVISKQLVETMGGEISVESEPGKGSTFMFTINLEKADPSRFEQPAVPSSD 578


>gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 589

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   + +T + ++  I +    
Sbjct: 353 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--NDKDTLEYFLSIILKESDR 410

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS+IE   + L+   + + +++ E  ++L+ +A+EK I++          
Sbjct: 411 LQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELY 470

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++AD   ++QV +NL++NA+ +T  GG V V V     +   I + D G G+ + EIP +
Sbjct: 471 LFADASRIKQVFINLINNAIAYTPAGGEVKVKVEEV-DKEVVIVVSDTGIGMEQDEIPRI 529

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + I+  H G   + S+L +G      L
Sbjct: 530 FERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKGTAFTVKL 581


>gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 667

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   ++A+    + +K AEE    KS FL++MSHE+RTP+NAI+GF++++          
Sbjct: 263 ITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDLLLSSGFTG--- 319

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  I  S  +LL ++N+ILD S+IEAG++ L      L + +   +   ++RA+
Sbjct: 320 -QEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLGYLMKTFEIRAK 378

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK+I+   +    +   V  D   + Q+++NL+ NA+KFT  GG V V+V      G   
Sbjct: 379 EKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVSVHLDKDHGDSI 438

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I + D+G GI+E ++  +  SF Q           G GLGL I + I     G    
Sbjct: 439 DLKIDVSDSGIGISEDKLSVIFDSFSQAHNNNAVRNFGGTGLGLSITRKITELMNGSISA 498

Query: 459 RSKLREGVEVIAIL 472
           RS L +G     +L
Sbjct: 499 RSTLGKGSTFTVVL 512


>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 932

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 9/264 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +        ++++AEE +  K+ FLA++SHE+RTP+N ILGF+E+++      L
Sbjct: 541 EDITEKKKLWVDLIASKEKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKE---PHL 597

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EYI  I++SG+ +L LIN+I+D+SRIEAG   +      +  ++       +  
Sbjct: 598 SGEEQAEYIELINQSGKRMLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPL 657

Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGR 399
           A  KN+ +            +  D   + Q++ NL+ N +KF+  G    V VG+     
Sbjct: 658 AANKNLLLSCNNGLSDEECVIETDSAKLTQILTNLVQNGLKFSVEG---EVRVGYIRKED 714

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D+G GI E    ++   F Q   ++    +G GLGL I+++ +   GG   + 
Sbjct: 715 LLEFSVSDSGIGIPESMKESIFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVE 774

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S    G   I  LP        PE
Sbjct: 775 SGEGNGSTFIFTLPFNPPGVQTPE 798


>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 927

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L+I + +S +    L Y V     P+    +    +    LD+ + G      
Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        +++ E + +    A EK +EI  KIDP +   V  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NL+ N++KFT   G + V+V   + R   I     ++D G GI+E +   + 
Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 464 QAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
             ++        +  +      D+   E    K    +    A+  N AKSRFL++MSH+
Sbjct: 535 IIHVRNRNNSKEINAVFLARISDEQKIEEANQKRNLQDALSAAKLANEAKSRFLSNMSHD 594

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN+I+G +++++     P + +  +E +  I  SG+HLL LIN+ILD+SRIE+G+ 
Sbjct: 595 IRTPLNSIIGMTDILKSH---PDDTKQVEEGLDKISMSGRHLLELINDILDMSRIESGKM 651

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSN 378
            L ES  ++  ++ E I +++ +A    I     I      +V  DE  ++Q+ LN+LSN
Sbjct: 652 SLQESGFNIRAMMSELIELVRPQALGSGITFISDIVSIEHDNVIGDELRIKQIYLNILSN 711

Query: 379 AVKFTAIGGRVHVTVGWTSG-----RGQYISI-KDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           AVK+T  GG + +T+          R  YI I  DNG G++      +  SF +      
Sbjct: 712 AVKYTWAGGSITITLREDGDVKNGRRHSYIFICSDNGIGMSREFQKHIFDSFERAEDNAI 771

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               G GLG+ IA++++   GG   + S+L +G      +P  
Sbjct: 772 GNVTGTGLGMAIARNLVNLMGGTIDVDSRLGKGSVFTVTIPLE 814


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 10/246 (4%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                    +   + N+AKS FLA+MSHE+RTP+NAI+G SE+   + M P      ++Y+
Sbjct: 810  NRRLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTP----QLRDYL 865

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              IH SG  LL +IN ILD S+IEAG+ +L     SL+D++            EKNIE+ 
Sbjct: 866  SKIHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELI 925

Query: 352  QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
              IDP +   +  D     Q+  NL++NA+KFT   G++ +                S+ 
Sbjct: 926  TSIDPDVPWHLVGDPLRTGQIFTNLINNAIKFTNK-GQITICASCLEKDDKQVRLLFSVA 984

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI +  I ++   F Q   +      G GLGL I + ++    G+  I S+  +G 
Sbjct: 985  DTGLGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGS 1044

Query: 467  EVIAIL 472
                 L
Sbjct: 1045 VFSFEL 1050


>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1183

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 6/258 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             ++ K +L  E++      +  + +AEE   AKS FLA+MSHE+RTP+N I+G S +  
Sbjct: 454 EIKSNKKNLEIEVDNRTKELEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLAL 513

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    N+  K YI  I    ++LLN++N+ILD S+IEAG+  L +   +L + +   
Sbjct: 514 QTRL----NDKQKNYIEKIDICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENI 569

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + ++     EKN+E+       +    + D   + Q++ NLLSNA+KFT   G++ V + 
Sbjct: 570 VNIIDFSVYEKNLELVVSYGTDVGKNFYGDNLRLAQILTNLLSNAIKFTND-GQIGVYIT 628

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     IKD G G+ E +   +  SF Q          G GLGL I++ ++    G
Sbjct: 629 KIDINRYQFEIKDTGIGLTEEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNG 688

Query: 455 QFLIRSKLREGVEVIAIL 472
           +  + S++  G   I  +
Sbjct: 689 KIWVESQINVGSRFIFQI 706


>gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 843

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 10/264 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +   + +  AE+ + AKS FLA+MSHE+RTP+N I+G ++++    +    +   ++
Sbjct: 443 KRNTELTQAKLAAEKADQAKSEFLANMSHEIRTPMNGIVGMADILANTDL----SAEQQQ 498

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +IN+ILDLSR+EAG+ E+S     L   V   +  L+ R  EK + 
Sbjct: 499 CVDTVRESSSALLKIINDILDLSRLEAGKMEISPIDFDLRKCVDGVVDTLRPRMVEKGLT 558

Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIK 406
             Q     L  +   D   +RQ++LNLL NAVKFT   G V + V             +K
Sbjct: 559 FTQTYTADLPELAHGDNGRLRQILLNLLGNAVKFTKE-GSVGLHVSRDKSDPYRMCFEVK 617

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+E +   +   F Q   A      G GLGL I+  +    GGQ  + S+  +G 
Sbjct: 618 DTGIGISEDQAEHIFERFSQADAATTRHFGGTGLGLTISNILAERMGGQITLASEPGKGA 677

Query: 467 EVI--AILPNTRVLNFIPEDNHES 488
                  L   +     P     S
Sbjct: 678 TFRLEIRLEPPKAAQNAPHAPTSS 701


>gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 901

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 151/298 (50%), Gaps = 21/298 (7%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            K  + I     E+  L   LE AK  ++E R  AE+ N AKS FL+SMSHELRTPLN+I
Sbjct: 474 IKEFLSIREDITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFLSSMSHELRTPLNSI 533

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GF++++EL  +    +E  K+ + +I  SG+HLL+LIN++L+L++IE+G   LS     
Sbjct: 534 IGFAQLLELSDL----SEKQKKQLKNISTSGEHLLHLINDLLELAKIESGNISLSVERTE 589

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L  IV EC+ M+   A++ +I+I   +       V AD   ++QV++N L+NA+K+    
Sbjct: 590 LKPIVEECLQMVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVLVNFLTNAIKYNREN 649

Query: 387 GRVHVTVGWTS-------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           G + +                  ISI+D G GIAE     +   F +      S  +G G
Sbjct: 650 GSITLFAEKKPAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFNRLGH-ETSTIEGTG 708

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF--------IPEDNHEST 489
           +GL I + ++    GQ    S    G +    +P    ++          PE   E+T
Sbjct: 709 IGLAITKDLIEKMDGQVGFESTEGVGSKFWFDIPIASDIDSDSLEQCRLKPETEIENT 766


>gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
 gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
          Length = 367

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 85  RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 143

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 144 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 203

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 204 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 262

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 263 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 321

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 322 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 365


>gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 783

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 167/272 (61%), Gaps = 3/272 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+    E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 502 RLMATIHDLSIARKGERDRVRELSELARKYGQE-KERAEAANRAKSEFLANMSHELRTPL 560

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 561 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 620

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + M+ L+A EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 621 EIDLCPLINETVRMISLQADEKNIAVNTRIEDAM-QLYADRRAIKQVLINLLSNAVKFTS 679

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG++ V    T G   +++I+D G GI +  I  +   F Q          G GLGL I
Sbjct: 680 YGGQITVRARKT-GSALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAI 738

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +S+   HGG   IRS    G  V   +P+ +
Sbjct: 739 TRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 10/288 (3%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                +    E    I + + +++      ++AE  N AKS FLA+MSHE+RTP+N I+G 
Sbjct: 768  EEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFLANMSHEIRTPINGIMGG 827

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             +++E  ++        K+ +     S + L  L+ +ILDLSRIEAG+ E+ ++   +  
Sbjct: 828  LQLLEATSLDH----EQKQLVEMGIASARRLTRLLTDILDLSRIEAGKMEIRKADFEVDR 883

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +      +    A EKN+ I   +DP L  +   D+  ++Q++LNL+ NA+KFT     V
Sbjct: 884  LCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQILLNLVGNALKFTHDD-TV 942

Query: 390  HVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
             +       +G      IS+ D+G GI++ ++  +   F Q   A     +G GLGL I 
Sbjct: 943  ELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQADGAFTRNFEGAGLGLSIV 1002

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
              ++   GG   + S   EG      LP          +N E+ Q K 
Sbjct: 1003 VRLVQMMGGNISVESTPGEGSTFYVSLPLEAGSGESAGENKENIQVKA 1050


>gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
 gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
          Length = 1497

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 219  AEKDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             E+  +  EL       +E     + A+  N AKS FLA+MSHE+RTP+N+I+   +++E
Sbjct: 1089 TERKRIEQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVGQLLE 1148

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        K+ +  +  +  HLLN+IN+IL LS++E+   EL      L ++ +E 
Sbjct: 1149 GTKLDT----QQKKLLQTLTNNSNHLLNIINDILSLSKLESRSLELEHRPFHLNEMFQEL 1204

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                  +AQ K I +   I   +  V   D+  ++QV  NL+SNA+KFT+  G+V V   
Sbjct: 1205 SNTFTPQAQSKEIGLTFTIASDVPDVLMGDDFRLQQVFRNLISNAIKFTSS-GQVTVNAS 1263

Query: 395  WTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          Y +++D G GI   +   +   F Q   +      G GLGL I + 
Sbjct: 1264 CDRDSVSEKSQVNLYFTVQDTGIGIDPAKQEDLFQPFVQADNSTTRQFGGTGLGLTICRR 1323

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            I+    G+  + S + EG      +P +   N    +  E+  
Sbjct: 1324 IIQTMNGEIGLDSIVGEGSTFWLKIPFSLGDNTRVPETEETND 1366


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +V +    E +  A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 583 LTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKLDT--- 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +INEILD S+IEAG+  +     +L D++     ++ L+AQ
Sbjct: 640 -TQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNVTAVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK IE    IDP +   +  D   + QVI+NL  NAVKFT   G + +T   +    QY+
Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQ-GEIVITARVSQLNDQYV 757

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    +KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GGQ  +R
Sbjct: 758 TLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVR 817

Query: 460 SKLREGVEVIAI 471
           S   EG      
Sbjct: 818 STEGEGSIFEFS 829


>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1238

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSLKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40]
 gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 942

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 16/363 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
            W ++ + +      EY           + L ++         A+      +   L    
Sbjct: 137 LWVIIAIDKRSWAISEYQGTITILLAGSLCLFLTFYFARRFRDALATPLQKIETGLRDFL 196

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-----EKDDLIAELEVAKS 233
             +           +   L+        L KS    L         E  + +  +E+   
Sbjct: 197 KGNFEKSITIEPSSVFKDLASNINRLGALQKSANDELQLNIDQSTHELRETLETVEIQNI 256

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             D  RK A + +  KS FLA+ SHE+RTPLN ILGFSE++    +         +Y+  
Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTELNN----QQVDYLTT 312

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S + LL +IN+ILD SR+E G   L    + +  ++ + + +    A EKNI +   
Sbjct: 313 IEESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTI 372

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
           ID  +   +  D   ++QV+ NL+SNA+KFT + G + + V               + D+
Sbjct: 373 IDHDVPENLLGDPLRLKQVLSNLVSNAIKFTDV-GYILLGVSKDQSSENQFTLKFRVTDS 431

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+++ +   +   F Q   +      G GLGL IA+ ++    G   + S L +G   
Sbjct: 432 GIGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVESTLGKGATF 491

Query: 469 IAI 471
              
Sbjct: 492 WFT 494


>gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 894

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 19/360 (5%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G     L +  P              +L +A + + +   +L     +   P+   L 
Sbjct: 249 LDGQPMLTLAVTTPRQIAARGQESLWLTSLSLAGAGTLVLGLLLVMLNRIVLAPLS--LL 306

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           T+    +   D   A +          +     +    +   +    D +          
Sbjct: 307 TRHATRLGTSDALDARLDLDRHDEIGVLAEAFDRMTAHLAQARQRLLDQLD-------AL 359

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E R  AE  N AKS FLA+MSHE+RTP+NA+LG +E++    +    +   + +   IH
Sbjct: 360 AEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLATDL----DAQQQRFAQTIH 415

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RSG  LL++IN+ILD+S+IEAG+  L+        ++ E        A  K + +  ++ 
Sbjct: 416 RSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTVRLP 475

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGP 410
             L   V  D   +RQ++ NL+ NA+KFT   G + V+   T          I ++D G 
Sbjct: 476 RDLPGLVHGDSTRLRQILFNLIGNALKFT-EHGEIRVSASLTIHADERMTLAIEVRDTGS 534

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA      +  +F QG  +      G GLGL I+Q +     G   + S   +G     
Sbjct: 535 GIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQGSCFTL 594


>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1238

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1238

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 629

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 34/383 (8%)

Query: 106 WRIWLLVGQIAIGLCWTL----LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
           W+  L+   I       L    +  +     +      +    LL    I A        
Sbjct: 24  WQTGLVWLHIISDATIALAYYSIPFLLIYFISKRKDVPFNGVFLLFGAFIIA-------- 75

Query: 162 AVFLSFFPVVVALSTQA---IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
                   ++   +       ++  +  ++    + TA + F  +   L   +   L   
Sbjct: 76  ---CGTGHLMDIWTLWYPDYWIAGGLKALTAIISIYTAFALFYLMPQALALPSPDQLEAI 132

Query: 219 AEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  I E +  +    +  + A+  + AKS FLA+MSHELRTPLN ILG++++++  
Sbjct: 133 NRILSTEIVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQILQRT 192

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 +E  ++ +  I++ G HLL LIN++LDLS+IEA + EL      L   +     
Sbjct: 193 ---ESLSEKGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTE 249

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + ++RA++K I    +IDP+L + +  DEK +RQV++NLLSNA+KFT   G V       
Sbjct: 250 ICRIRAEQKVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQ-GSVTFKTQVI 308

Query: 397 SGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +                + D G GI   +   +   F Q   + K   +G GLGL I+Q 
Sbjct: 309 NQESNANGKTNYKIRFEVVDTGTGITPEQAEKIFQPFEQV-GSQKRQSEGTGLGLAISQK 367

Query: 448 IMANHGGQFLIRSKLREGVEVIA 470
           I+   GGQ  ++S+  +G     
Sbjct: 368 IVLLMGGQIKVQSEFGKGSTFWF 390


>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 1000

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-Y 205
           +  +I+  +   L +   +SF  + V      ++     ++ L        S+       
Sbjct: 232 VGQAITIANQQRLMFIGVMSFITIAVISLALRLVRKVTNNLQLVLEFLRRDSYSEESPLR 291

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE+        + AKS FLA+MSH
Sbjct: 292 ELIKGKDELSKFAQEVERLSYEREQAKVKLTQAKEDAEQAKDDAIKASKAKSSFLANMSH 351

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+   ++      T K+Y+G I  S Q LL+LIN+ILD S+IE+G 
Sbjct: 352 EIRTPLNGVIGISEVLSDTSLTA----TQKDYVGTIETSSQLLLSLINDILDFSKIESGM 407

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  +A+EK I++   I  +    +  D+  +RQVI+N +S
Sbjct: 408 LLISPHSTCVRESIYDIASIVSPKAKEKGIDLKVSISRNTPYRLMIDDHRLRQVIMNFMS 467

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + VT    SG       S++D+G GI E +   +   F Q   +    
Sbjct: 468 NAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDSGIGIDEQQQKNIFEPFAQEDNSTTRQ 527

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG+  + S+   G      +
Sbjct: 528 FGGTGLGLAISTQLVELMGGKIQLESEKGHGSRFFFQI 565


>gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1238

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1179

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 144/269 (53%), Gaps = 15/269 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  ++     ++ AE  N AKS FLA+MSHE+RTPLN I+GF++++    +    N
Sbjct: 526 ITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL----N 581

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET ++Y+  + +SG  LLN IN+ILD S+IEAG+ E++ S  +L ++  E   +++ + Q
Sbjct: 582 ETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKYQVQ 641

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            K +E+   I   L   +WADE  ++Q+++NLL NAVKFT   G + + V   +      
Sbjct: 642 SKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFT-ESGEIELKVEALTNPELPE 700

Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI   +   +  +F Q   +      G GLGL I+  ++     Q  +
Sbjct: 701 IKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQLQV 760

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S + +G      +    +L   P ++ E
Sbjct: 761 ESVIGKGSVFYFEI----ILQSEPGESIE 785


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 33/334 (9%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                + L  Q  +     D+ +             +     K    +     E   ++A
Sbjct: 90  TAVQALRLGAQDYLFKPFDDLEMVIATVNKALERRRLVEERDKLVRTLAELAIENGRILA 149

Query: 227 ELEVAKSLSDE--TRKRAE--EENLAK---------------------SRFLASMSHELR 261
           E     S  +E   ++ AE  + NL +                     S+FLA+MSHE+R
Sbjct: 150 ECRRVNSSLEEKVAQRTAELSKANLQQKAIIAELREAKEAAEAANRAKSQFLANMSHEIR 209

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N +LG +E++    +    +E  K Y   +H SG+ LL++IN+IL++S+IEAG+ E+
Sbjct: 210 TPMNGVLGMAELLLHSEL----DEKQKSYAKMLHHSGESLLDIINDILNISKIEAGKLEI 265

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L +  R  + + +   + K + +  +I+  +   V  D   +RQV++N+++N +
Sbjct: 266 ERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLRQVLINVVNNGL 325

Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  G  +V V++   +  GQY    +KD G GI    I  +   F Q   +      G
Sbjct: 326 KFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQVDGSTTRKYGG 385

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL IA+ ++   GG+  + S+  +G     I
Sbjct: 386 TGLGLAIAKQLVELMGGEIGVESEPGQGSTFTFI 419


>gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 939

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/323 (30%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  S F  +   L  S   + + ++E   L A +E   S   + +  A+  N AK+
Sbjct: 411 AELDTLASSFNQMAQQLQASFTALETAKSE---LEARVEERTSELKDAKIAADTANRAKT 467

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHELRTPLN ILG++++++        +E  K+ +  I++ G HLL LIN+ILD
Sbjct: 468 EFIANMSHELRTPLNGILGYAQILQ---PLKTTDEKVKDGLRIIYQCGSHLLTLINDILD 524

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S+IEA + EL  +       +   + + +L+A++K I +  +   SL  S+ +DEK +R
Sbjct: 525 ISKIEAQKMELHPTDFHFPSFLSGVVEICRLKAEQKGIVLAYQPQNSLPDSIRSDEKRLR 584

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------------QYISIKDN 408
           Q+++NLLSNA+KFT   GRV   V     +                          I+D 
Sbjct: 585 QLLINLLSNAIKFTDE-GRVDFKVEVIGTQECPQAELREKSSITNHQLPITKIRFQIEDT 643

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++  +   F Q S A     QG GLGL I+Q I+   G    ++S+   G   
Sbjct: 644 GIGINSEQLEKIFLPFEQVSEA-SRNHQGSGLGLAISQKIVELMGSTIKVKSQPGVGSTF 702

Query: 469 IAILPNTRVLNFIP---EDNHES 488
           +  L   ++   +P   E NH++
Sbjct: 703 LVELDLIQLPESVPPSVEPNHKN 725


>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
 gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
          Length = 1367

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +     +   +     I + ++ +      ++ AE+    K RFLA+MSHE+RTP+N I
Sbjct: 812  IRLEDGRIEEVSAISHDITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGI 871

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            +G  +++    +        +EY+  I +S + LLN++N+ILDLS++EAG+  L    + 
Sbjct: 872  IGMIDLMMDTPLEN----KQQEYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMD 927

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
            +  +V +   +   +A+ KN  +  ++DP +   + ADE  + Q+I NL+SNA+KFT   
Sbjct: 928  IRFMVEKVYTLFLQQAKAKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFT-ED 986

Query: 387  GRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G+V +     S         + + D+G GI+  +   + ++F Q   +   +  G GLGL
Sbjct: 987  GQVAIKFTLASKGELSVHLLVEVADSGLGISPEDQNRLFSTFTQLDNSSSKSYSGTGLGL 1046

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             I++ +     G   + S++  G          +  +  PE
Sbjct: 1047 AISKELCRLMNGDIGVISEIGHGSTFWFTF-EAQPTDEKPE 1086


>gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
          Length = 412

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL +I G++E +  + +   N E  K ++  I      +  L
Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL ++E          + L ++V     ++Q  A+E  +++  + +     V  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECED--VVVKGN 297

Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           ++ + Q++LNL+ NAVK+T     G   V V  + +     + +KD GPGI +     + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGIPKESQSRIF 357

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I ++I+  HGG+  + S++ +G  +   LP  
Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411


>gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 784

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 167/272 (61%), Gaps = 3/272 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+    E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 502 RLMATIHDLSIARKGERDRVRELSELARKYGQE-KERAEAANRAKSEFLANMSHELRTPL 560

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 561 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 620

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + M+ L+A EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 621 QIDLCPLINETVRMISLQADEKNIAVNTRIEEAM-QLYADRRAIKQVLINLLSNAVKFTS 679

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG++ V    T G   +++I+D G GI +  I  +   F Q          G GLGL I
Sbjct: 680 YGGQITVRARKT-GSALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAI 738

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +S+   HGG   IRS    G  V   +P+ +
Sbjct: 739 TRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 14/260 (5%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +       ++     EL +     ++ ++ AE  N AKS FLA MSHE+RTP+NA++G 
Sbjct: 1102 ALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1161

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            + ++    +        ++++  +  SG  LL++IN+ILD S+IE+G+ EL E    +  
Sbjct: 1162 TGLLLDTELTS----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRT 1217

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             V + I +L  +A +K+IE+   I P +   +  D   +RQ++ NLL+NA+KFT   G V
Sbjct: 1218 CVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPE-GEV 1276

Query: 390  HVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V+V                  +IKD G GIA   +  +   F Q   ++     G GLG
Sbjct: 1277 VVSVRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLG 1336

Query: 442  LPIAQSIMANHGGQFLIRSK 461
            L I++ +    GG   + S+
Sbjct: 1337 LVISKRLGEMMGGYLWVESR 1356


>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
 gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
          Length = 954

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 145/311 (46%), Gaps = 22/311 (7%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             I +  +L  ++ F  +      KS +KI                      E   +A  
Sbjct: 517 PLIVIFILLVASILFMIFWQEARRKSYLKIAE--------------KNEQLLEAVDQANR 562

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FLA MSHE+RTP+NAI+G +E+ +       + +  ++Y+  I  S + LLN+
Sbjct: 563 ANQAKSDFLARMSHEIRTPMNAIVGLTEIAKH---YEDDPKKIEDYLDKIDVSSKVLLNI 619

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWA 363
           IN+ILD+S IE  + ++++    L +I+     + + + ++K I    + +  + + +  
Sbjct: 620 INDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGIVFEVQDEEVTHTYLIG 679

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQYIS--IKDNGPGIAEGEIPT 419
           D   + Q++LNL+SNA KFT+ GG++ + V   +      Y +  ++D G G++E     
Sbjct: 680 DGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNFLVEDTGEGMSEEMQTR 739

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q S        G GLGL IA++ +    G   ++SK  EG   +  +P      
Sbjct: 740 LFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKGEGTTFVVSIPFEFEQA 799

Query: 480 FIPEDNHESTQ 490
             PE      +
Sbjct: 800 AEPEITERPVE 810


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 3/271 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  L +    +       +    E++  +   +      E  +  KS FLA+MSHELRTP
Sbjct: 394 TKELERQKTDMQQKNFALEQTQVEMQKTQVALETKANELELASRYKSEFLANMSHELRTP 453

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN++L  ++++     G L +    EY   IH +G  LL LIN+ILDLS++EAG+ E+  
Sbjct: 454 LNSLLILAQLLANNKPGNLTD-KQIEYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHA 512

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKF 382
           + ISL +++       +  A+++ +     I + SL++++ D + ++Q++ NLLSNA KF
Sbjct: 513 NDISLTNLLETIEQKFRPIAEQQELNFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKF 572

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G + + V  +       S+ D G GI + +   +  +F Q   + +    G GLGL
Sbjct: 573 TQQ-GNIKLIVQKSEADFISFSVSDTGIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGL 631

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            I++      GG+  + S+  +G      LP
Sbjct: 632 SISRQFARLLGGEITLHSEEGKGSTFTFSLP 662


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 4/280 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              Y+     +     ++        I E +  +    E    AE  N AK +FLA+MSH
Sbjct: 375 LIVYMQKVPVRDEAGRVTGIIGLAVDITEHKQLEVKLTEALAAAEAANQAKDQFLAAMSH 434

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAI+GFSEV+  +  GPL N+  + Y+ DI  S +HLL +IN++LDL+++ AG+
Sbjct: 435 ELRTPLNAIMGFSEVLLDQHFGPL-NDKQQVYVNDILDSARHLLEIINDVLDLAKLNAGK 493

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLS 377
                  + +  ++R+ + +++ RA  KNI +   +D      V  D +  +Q++ NLLS
Sbjct: 494 TNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRRFKQIMYNLLS 553

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT  GG + V     +G    IS++D G GIA      +   F Q S  + +   G
Sbjct: 554 NAVKFTPDGGAIKVEC-RDAGEWLEISVEDTGIGIAATHAEHIFEPFYQVSGNLTAKTPG 612

Query: 438 VGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAILPNTR 476
            GLGL I + ++  HGG+  +  S+  +G     +LP  +
Sbjct: 613 TGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLPVRQ 652


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 17/327 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA---------LSFFTYITYHLFK 209
           +     ++   V + L     ++ ++  +       T          L+  T     L K
Sbjct: 300 IALMSLVTLLIVSLTLRLVRKVTGNLNLVLEFLSRDTYEEDNNENSPLTELTKGKDELSK 359

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
              ++     E++    +L  AK  +++ +  A E + AKS FLA+MSHE+RTPLN ++G
Sbjct: 360 FAKEVKKLSYEREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIG 419

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G   +S  +  + 
Sbjct: 420 ISEVLSDTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVR 475

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387
           + + +   ++  +A+EK I++   I  +    V  D+  +RQ+I+N +SNAVKFT  G  
Sbjct: 476 ESIYDIASIISPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCV 535

Query: 388 RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + V              S+KD+G GI E +   +   F Q   +      G GLGL I+
Sbjct: 536 ELSVITREIKNGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAIS 595

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++   GG+  + S+  +G      L
Sbjct: 596 TQLVELMGGEIQLESEKGKGSRFFFEL 622


>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1238

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
 gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
          Length = 931

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/340 (28%), Positives = 161/340 (47%), Gaps = 23/340 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212
             +     P+   +S    +    LDI + G L   L        +    ++ +  +   
Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    ++  + + +LE+     D  +KRA+E    KS FLA+MSHELRTPLN ++GF+ 
Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +    N + K+Y+  I  S  +LL +IN+ILD S++EAG+  L        D +
Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390
            E + +L   A EK +E+  KID  + + +  D   ++QV+ NL+ NAVKFT  G   V 
Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429

Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +         +   ++D G GI+E +   +  +F Q   +I     G GLGL I Q +
Sbjct: 430 VELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489

Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
           ++  GG+  + S+L +G             LP ++ ++  
Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLPVSQPIDTT 529


>gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLP---YAVFLSFFPVVVALSTQAIMSMH 183
              G +T   LT+     +   +  +   +  L      V   F  ++++     ++S  
Sbjct: 127 YFGGAFTSPVLTVGVPLVIKGHIEGAIFMHASLEEMNRTVLNIFLLMLLSGGMAFVVSFI 186

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           ++  + +  ++  L   +     + K N        E+D++         +    R+ A+
Sbjct: 187 LISYT-SNRISEPLKKMSLAAREIAKGNFSARVDHFEEDEIGDLARSFNVM---ARELAQ 242

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E++ K  F+A++SHELR+P+ +I G+ + I     G +  E   +Y+  +    + +  
Sbjct: 243 LEDMRK-EFVANVSHELRSPITSIQGYIDGILD---GTIPKEKTYDYLKVVQEETRRMSR 298

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++L+++++E+G + L+ +   + +++R CII  + R  EK++ +    +     V+A
Sbjct: 299 LINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEEDRRFVFA 358

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA+KF+   G +H+      G   +I++KDNG GI+  ++  +   
Sbjct: 359 DRDKIEQVLTNLIDNAIKFSKPKGIIHL-FTEVKGDKVFITVKDNGIGISPEDLEHIWER 417

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           F +   +    + G GLGL I + I+  H  +    S+L++G      LP  +V
Sbjct: 418 FYKADKS--RGKDGAGLGLYIVKKIIEAHKEEIWAESELKKGTSFTFTLPIKKV 469


>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
 gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
          Length = 808

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 21/359 (5%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +       E+     +    +++ ++   + +L    F +    +++L    I+   V+ 
Sbjct: 116 MVHQMGGSEFQLATLTVQSDLSMILNDFEDRVLLLLAFEAVKIFLLSLVCLTIVYRLVVK 175

Query: 187 ISLAGMLATAL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             +                 F   T   +   +  L      +  I  +       ++ +
Sbjct: 176 RLMTMSSQINHQQVEDNKPRFLTPTNSTYSDEISTLESSY--NQSIERIRQQYQELEKAK 233

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE  N  KS FLA+MSHE+RTP+N I+G S ++    M     +  KEY+  ++ S  
Sbjct: 234 DTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSL 289

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL+LIN+ILD S+IEAGR EL +  + ++ I  +     +++A++K ++    IDP + 
Sbjct: 290 TLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIP 349

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGI 412
             V  D   +RQV+ NL+ NA+KFT   G V +++                 + D+G GI
Sbjct: 350 TMVIGDGTQLRQVLNNLVGNAIKFT-EHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGI 408

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           AE +  +V   F Q   +      G GLGL I   I+   G +  + S + +G      
Sbjct: 409 AEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSVVGKGSTFYFT 467


>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 639

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 15/340 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213
           F++       F  ++  L     + +  L +    +   +         +    F   V 
Sbjct: 151 FLVIAEAIKIFLLIIGVLWVTFRLMVKPLQLLSGAVSDFSGGHVPSKVQLPKRWFFDEVG 210

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L  +   +  +  +   +   +E R +AE  N  KS FLA+MSHE+RTP+N I+G + +
Sbjct: 211 LLELKY--NRSVERVSEHQLEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    +E  K+++  I+ S   L+ +I++ILD S+IEAG+ EL  +  +L+D++ 
Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLH 324

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E   +  ++AQ+K +++   ID  L   V  D   ++QV+ NLLSNAVKFT   G V + 
Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDAQLPSEVEGDVGRLKQVLSNLLSNAVKFTER-GHVKLM 383

Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V   +        +  + D+G GIA+     V   F Q   +      G GLGL I  S+
Sbjct: 384 VSQVNREDDIASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSL 443

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +   GG+  + S+   G      +P   V +     +  +
Sbjct: 444 VEVMGGEIRLTSEPGLGSCFEFTIPLNIVSDTPIAPSTPN 483


>gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 711

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 4/244 (1%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + +K+AEE N++KS FLA+MSHELRTP+N I+G++E++E E      N    + I  
Sbjct: 190 ELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTEMLEEEI-KECPNPNLLQDIKS 248

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           IH + +HLL L++ ILD+S+IEAG+  L      L  +++  I  +Q   ++K   +   
Sbjct: 249 IHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEKKANALQIS 308

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYISIKDNGPG 411
            D  L   + D   +RQ+++NLLSNA KFT   G + + V    T G    I + D G G
Sbjct: 309 FDEDLGEAYTDLTKVRQILINLLSNASKFTDQ-GIITLEVRRQRTQGDWITIRVSDEGIG 367

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +   +   +   F Q   +I     G GLGL I +      GG   I S+  +G      
Sbjct: 368 MTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFGKGSHFKVR 427

Query: 472 LPNT 475
           LP  
Sbjct: 428 LPAQ 431


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 4/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHELRTP+ +I GFSE +    M   + ET + ++  I R    
Sbjct: 341 ELKKLEQMRKDFVANVSHELRTPITSIKGFSETLLDGAM--NDKETLEMFLNIILRESDR 398

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS++E   ++L+     + +++ E I +L+ + ++K+IE+    D ++ +
Sbjct: 399 LQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA 458

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   ++QV +NL+ NA+ +T  GG V V++   S     I ++DNG GI E E P +
Sbjct: 459 -EVDSFRIKQVFINLIGNAITYTPAGGEVSVSLKQ-SDSVIVIEVRDNGIGIEESEFPRI 516

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  HGG   + SK+ EG      L
Sbjct: 517 FERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTL 568


>gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 680

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 6/285 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              Y    + + +           + I +    +      ++ AE    AKS FL++MSH
Sbjct: 256 RIVYARGGVERDDEGQPEFIFGILEDITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSH 315

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPL  ILG++ +++     P +    + YIG I+++G+ LL+LI ++LD S++EAG+
Sbjct: 316 EIRTPLTTILGYANLLKGVGDLPKDA---RHYIGRINKAGEALLSLITDVLDFSKLEAGQ 372

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L      L  +  + +         +NI I    D +    +  D+  +RQV+ NL+ 
Sbjct: 373 VTLDPQPTDLRQLAGDVVDQFMAMTDTRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIG 432

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA KFT   G V VT+   S     + +KD+GPG+   +   + T F Q   +I     G
Sbjct: 433 NACKFTHD-GYVAVTLA-VSDGQLRVKVKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGG 490

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            GLGL I   I+    G+  + S+  +G      +P        P
Sbjct: 491 SGLGLSICHEIVKLMQGRIGVESEAGQGSTFWFEIPVVPTEAPAP 535


>gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
 gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
          Length = 1039

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----EEE 709

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EY+  I  +   LL LI++ILDLS+IEAG  EL+ S I L +++RE      LR +
Sbjct: 710 QEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVK 769

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
              +++          V+ ++  + Q+++NL++NA+KFT  G    +  G+       Y 
Sbjct: 770 TDAVKLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTEKGS---IRFGYEMRENELYF 826

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + +   +   F +      S  QG GLGL I Q+++   GG+  + S+  
Sbjct: 827 YVADTGCGIPKDKQQNIFGRFVKL----NSFAQGTGLGLSICQTLIERMGGRIGVESEEG 882

Query: 464 EGVEVIAILPNTRVLNF 480
           +G      LP    +  
Sbjct: 883 KGSTFWFTLPYKPAVKE 899


>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 1313

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+E + A+    E ++ AE  N AKS FLASMSHELRTPLN ILG++++           
Sbjct: 814  ISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIF---NHDKSLT 870

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E  +E I  I RSG+HLL LIN+ILDLS+IE+G+ EL  +     + +++   + ++RA+
Sbjct: 871  EKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAE 930

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------G 394
            +KN+E   +    L + V+ADEK +RQV+LNLLSNAVKFT   G+V   V          
Sbjct: 931  QKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQE-GQVSFKVIYQSVPAPST 989

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              +       ++D G GIA  ++  +   F Q         +G GLGLPI++ ++    G
Sbjct: 990  EENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGD-QSEQVEGTGLGLPISKKLVEMMAG 1048

Query: 455  QFLIRSKLREGVEVIAILPN 474
            Q  ++S L  G      +P 
Sbjct: 1049 QLQMQSMLGVGSIFWFEIPL 1068


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 17/327 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA---------LSFFTYITYHLFK 209
           +     ++   V + L     ++ ++  +       T          L+  T     L K
Sbjct: 304 IALMSLVTLLIVSLTLRLVRKVTGNLNLVLEFLSRDTYEEDNNENSPLTELTKGKDELSK 363

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
              ++     E++    +L  AK  +++ +  A E + AKS FLA+MSHE+RTPLN ++G
Sbjct: 364 FAKEVKKLSYEREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIG 423

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G   +S  +  + 
Sbjct: 424 ISEVLSDTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVR 479

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387
           + + +   ++  +A+EK I++   I  +    V  D+  +RQ+I+N +SNAVKFT  G  
Sbjct: 480 ESIYDIASIISPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCV 539

Query: 388 RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + V              S+KD+G GI E +   +   F Q   +      G GLGL I+
Sbjct: 540 ELSVITREIKNGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAIS 599

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++   GG+  + S+  +G      L
Sbjct: 600 TQLVELMGGEIQLESEKGKGSRFFFEL 626


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 891

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           ++      +      ++ AE  + AKS FL+ MSHELRTP+N I+G + ++    +    
Sbjct: 617 MVFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---- 672

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  + YI  I  S   L+ ++NEILDLS+IEAG+  L   +  L D+V     +   +A
Sbjct: 673 DEEQRSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQA 732

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
            EK I++   +D  +   +  D   +RQ+++NL+SNA+KFT   G V++ V   +     
Sbjct: 733 MEKGIQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTER-GHVNIFVERKAYSRRK 791

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+ D G GI       +   F Q   A+     G GLGL I ++++   GG  
Sbjct: 792 KKCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSI 851

Query: 457 LIRSKLREGVEVIAIL 472
            + S    G      L
Sbjct: 852 GVDSDEARGATFRFQL 867


>gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 953

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 141/259 (54%), Gaps = 11/259 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E ++ +    +T    +     K  FLA+MSHELRTPLN ILG SE ++   +G LN+
Sbjct: 546 ISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNS 605

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I  I +SG+HLL LI++ILD+S+IEAG+ EL  + + + ++    + ++   A 
Sbjct: 606 -NQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAF 664

Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            K I I   I  +L    +  D + +RQV++NLLSNA+KFT   G++++ VG  +     
Sbjct: 665 TKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAA 724

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +  Y S+ DNG GIA  ++  +   F Q   ++     G GLGL + + I+  HGG
Sbjct: 725 ISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 784

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S+L +G      LP
Sbjct: 785 CVEVSSQLGKGSCFTVYLP 803


>gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1118

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 161/414 (38%), Gaps = 36/414 (8%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWR---IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            L        +       + +       L   +     W  +  +               
Sbjct: 223 MLLNEDGYWLASPYPERNWAFMFKGREDLRFSLEHPRAWARIQAM---DQGQFTTPTGIY 279

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
            T  I+++ +A +   +  A       +      +A +                +S    
Sbjct: 280 TTSTISVAPTAGATVKVANAQSWKVVCMTSTAVIRAHVDPVRGHYLAILGGIFLMSALIG 339

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +T                    IA  E      +  R+ AEE N AKS FLA MSHE+RT
Sbjct: 340 LTRA----------------RFIAARERNGRELETARRAAEEANRAKSDFLARMSHEIRT 383

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G + +     +         +Y+  +  S   LL +IN+ILD S+IEAGR  + 
Sbjct: 384 PMNAIIGLTHLALKTQLTA----KQADYLAKVSLSANSLLGIINDILDFSKIEAGRLTVD 439

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           E+   L D++   I ML L A++K IE    +  ++   V  D   + QV+LNL +NA+K
Sbjct: 440 EADFLLDDVLNNIINMLGLSAEQKGIEFLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIK 499

Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V +        G       S++D G GI    +  +   F Q   +I     G
Sbjct: 500 FTEK-GEVILQADLLEQDGTTAVIRFSVRDTGIGIGPEHLDQLFQPFSQADGSITRQFGG 558

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            GLGL I++ ++   GG   + S+  +G E    LP        P+  +++ +Y
Sbjct: 559 TGLGLSISKRLVKMMGGDMAVVSEPGKGSEFSFTLPLK----LQPDHANDTFEY 608


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRF 252
            T  +  L  S  ++   + E   +  E+ V     +  R       +  E+ +  KS F
Sbjct: 443 LTRQSEILQASEEELRVQEEELRQINDEMTVQNKALEIARQQLSLKAEELEQSSRYKSEF 502

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN++L  + ++E      L+++   +Y G IH+SG  LL LIN+ILDLS
Sbjct: 503 LANMSHELRTPLNSVLILARLLEENKDRNLSSKQV-DYAGIIHKSGSDLLKLINDILDLS 561

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           +IEAG+ E+    +S+  +V +   + ++ A EK+I    +I   +  +V  D + + QV
Sbjct: 562 KIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFSTEIAAGVPATVQTDRQRLEQV 621

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           I NLLSNA KFT   G + + +   +    YI++ DNG GI   +   +  +F Q   + 
Sbjct: 622 IKNLLSNAFKFTPKNGNIQLRLTAAADG-VYIAVSDNGTGIPVEKQQLIFEAFRQADGST 680

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGL I++ +M   GG+  + SK  +G     +L
Sbjct: 681 SRKYGGTGLGLSISKELMKRLGGEIRLESKEGQGSTFTVVL 721


>gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 1195

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 14/260 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   ++ ++ AE  N AKS FLA+MSHE+RTP+NAILGF ++++ +     N+
Sbjct: 691 ITERKKYQEALEKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKKV----ND 746

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y+  I  +G+ LL+LIN+ILDLS+IEAG+ ++   +I L +++ E   M    A+
Sbjct: 747 ERSRRYLESITSAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFAETAK 806

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG-- 400
           +K +E+   ID ++  V   DE  ++Q++ NL+ NA+KFT  G  ++ +           
Sbjct: 807 QKQLELLIDIDDNVPDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKSDNHQ 866

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   ISI+D G GIAE +   +   F Q          G GLGL I + +     G
Sbjct: 867 KFSHCSLKISIEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTEILEG 926

Query: 455 QFLIRSKLREGVEVIAILPN 474
              + S+L +G   I   P 
Sbjct: 927 TIDLDSQLGKGSIFILSFPK 946



 Score = 37.6 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 10/174 (5%)

Query: 57  LLVANIGTWFTQNPIFPMW--SLITLAVYAANLSLGKKVM--NSDIKIGEVYVWRIWLLV 112
            L  +I            W      LA        G       + ++   + +W      
Sbjct: 33  FLFGSIAVLIVVYCYGIFWGTLAGMLAGSITFYLWGHPYAMIIATLEAAFIALWSRRQRN 92

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA-VFLSFFPVV 171
             +  G+ W LL +   G +    L +  S TLLIAL       F    A + +S+ P+ 
Sbjct: 93  FVLLDGIYWVLLGMPLVGLFYGLILPVSASGTLLIALKQGLNGIFNALIANLLISYIPLD 152

Query: 172 VALSTQ-----AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             ++ Q       ++  + +  LA +L  +L                 +  + E
Sbjct: 153 HLINPQKSKQPLSLTQTLFNFLLAFILFPSLFLTVLHGKESLSFIEAEIQSELE 206


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 14/260 (5%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +       ++     EL +     ++ ++ AE  N AKS FLA MSHE+RTP+NA++G 
Sbjct: 1105 ALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1164

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            + ++    +        ++++  +  SG  LL++IN+ILD S+IE+G+ EL E    +  
Sbjct: 1165 TGLLLDTELTS----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRT 1220

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             V + I +L  +A +K+IE+   I P +   +  D   +RQ++ NLL+NA+KFT   G V
Sbjct: 1221 CVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPE-GEV 1279

Query: 390  HVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V+V                  +IKD G GIA   +  +   F Q   ++     G GLG
Sbjct: 1280 VVSVRSQPSPNQKTKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLG 1339

Query: 442  LPIAQSIMANHGGQFLIRSK 461
            L I++ +    GG   + S+
Sbjct: 1340 LVISKRLGEMMGGYLWVESR 1359


>gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 753

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 8/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +      +E R  AEE   AKS FLA+MSHE+RTP+N ++G ++++E   +  
Sbjct: 350 ERDMTAAKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDL-- 407

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   + Y   I  S + LL LIN+ILDLS+++AG+  L+     L   + E I +L  
Sbjct: 408 --DGDQRLYTNTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLT 465

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
           +A+ K + +  + D  L   +  D+  +RQ++ NL+ NA+KFT  G  +V V +      
Sbjct: 466 QAEAKGLTLEVERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKVSVEMEPAQDG 525

Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G  +  +I D G GI +  +  +   F Q   AI     G GLGL I++ +    GG+  
Sbjct: 526 GVLLNCAIIDTGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRIT 585

Query: 458 IRSKLREGVEVIAILPNT 475
           + S++  G     +LP  
Sbjct: 586 VTSEIGSGSCFTLVLPFA 603


>gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 636

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 13/356 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAV--FLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
           +  A LL    ++   + +  + V  ++   P+    S    ++   L            
Sbjct: 255 WTRAVLLAVGILTVFMSMVALWMVVKYVVIKPLSHLRSVSEAVTRGDLQQR---ADIHTN 311

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             F  +     K    +   Q+E  +   +L+       +   R  E N  K  FLA+MS
Sbjct: 312 DEFEDLAASFNKMLRHLTDAQSELKEANYDLDAKVDQLAQLNMRLHEMNRLKGEFLANMS 371

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFSEV+          +  K Y  +I +SG+ LL +IN+ILDL+++EAG
Sbjct: 372 HELRTPLNSIIGFSEVLA---GIDSLTDKQKRYAQNIQKSGRSLLEMINDILDLAKLEAG 428

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + ++  S   +  I+     M++   ++KNI++   I+  L +++ D+  ++Q++ NLLS
Sbjct: 429 KMDVRLSEFRIDSILSAHCDMVRSLTEDKNIDLVLDIENDLPALYQDQAKLQQILTNLLS 488

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS-----IAIK 432
           NA+KFT  GGR+ V     S     + + D G GIA+ +   +   F QG+       + 
Sbjct: 489 NAIKFTPEGGRITVGAKGDSRGFIEMYVSDTGVGIADADKEIIFEKFRQGTAVLGRDNLT 548

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I + +    GG+  + S+L  G      +P  R          +S
Sbjct: 549 REYSGTGLGLSIVKELCKLLGGEVSVESELGRGSTFRVTIPWMRADQPQAAAKLQS 604


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE    +  F+A++SHELRTPL  I  ++E ++   M          ++G I    + ++
Sbjct: 372 EEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAE--RFVGVIRNETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++    L      +++++ E       + ++K+I     ++  +  V 
Sbjct: 430 RLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVV 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ NL+SNA+K+T  GG + +     S     IS++D G GI + ++  +  
Sbjct: 490 IDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ I+  HGGQ  + S+  +G      LP +
Sbjct: 550 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPMS 602


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 154/308 (50%), Gaps = 8/308 (2%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
           H++   ++  +A   S    + +   +    +       ++  AE +  +   ++ R+ A
Sbjct: 174 HMIHKRMSDAIAGLRSPLRPLPWFASREFRALDFSVGVLEETFAERDEREFALEQAREAA 233

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKS FLA+MSHE+RTP+N ++G +E+++   +    ++  + Y   I +SG  LL
Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRL----DDDQRMYAETIGKSGSALL 289

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN+IL+ S+IEAG+ ELS +  +L   V + + +L  +A EK +E+  + DP+L  ++
Sbjct: 290 TIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELF 349

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             D   +RQVI N+  NAVKFT  G     V  T     G    + + D G GIA+  I 
Sbjct: 350 EGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIG 409

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +  +F Q   A     +G GLGL I+  ++   GG   ++S   +G      +P     
Sbjct: 410 RIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIPLRASE 469

Query: 479 NFIPEDNH 486
             +P  + 
Sbjct: 470 KTLPAQDS 477


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
           +A  +  +       +      +   +     ++   +    AE   +   LE      +
Sbjct: 314 RAATTPAIALAGGLAVTLILFIYLVSLANQRARTEQVVAQRTAELRGVNMRLEERTIQLE 373

Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           E        + RAEE   AKS+FLA+MSHE+RTP+N ++G +E++    +    N + +E
Sbjct: 374 ESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL----NASQRE 429

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I +S   LL+LIN+ILD S+IEAGR EL   A SL D + + +     RA EK IE
Sbjct: 430 YLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIE 489

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR--GQYISI 405
           +   +   +  ++  D   +RQV++NL+ NA++FT  G  V  V V     +      ++
Sbjct: 490 LACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLRFAV 549

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D GPGIA  +   +  +F Q   +      G GLGL IA  ++   GG+  + S +  G
Sbjct: 550 SDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRG 609

Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489
                 +         P    E  
Sbjct: 610 SVFHFTIAFALAQGETPHPPAEQP 633


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/378 (27%), Positives = 163/378 (43%), Gaps = 27/378 (7%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           WT  T             IYK AT  I   +    + M+ YA+   FF +++ +      
Sbjct: 266 WTAATDKRLNKLALASSNIYKLATERINTRLETEKSRMIQYAIAAVFFLILLMILAVIFY 325

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           ++      L   L               +  V      A    L   +            
Sbjct: 326 NVTKESRLLDETLKNIQFELDPQKKRELQRIVASRDLAAIYKFLGETI------------ 373

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
              E N AK  FLA+MSHE+RTPLN I+GF+++++   + P      +E+I  I  S  +
Sbjct: 374 --VEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSP----DQQEFISVIENSSDN 427

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL+++N+ILDLS+I A + EL + A + I+   + +     +A EKNI+    +DPS+  
Sbjct: 428 LLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK 487

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEG 415
            +  D   + QVI+NL+SNA+KFT   G V V +  T         Y +++D G GI E 
Sbjct: 488 TLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEE 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  +F Q          G GLGL I+  ++   GG+  I S+  +G      L   
Sbjct: 548 QKAKIFGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTL--- 604

Query: 476 RVLNFIPEDNHESTQYKC 493
             L   P+   E   +  
Sbjct: 605 -TLPKGPDQAKEIPDFHG 621


>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
 gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
          Length = 918

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISTVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L     +L + + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 412

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL +I G++E +  + +   N E  K ++  I      +  L
Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL ++E          + L ++V     ++Q  A+E  +++  + +     V  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECED--VVVKGN 297

Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           ++ + Q++LNL+ NAVK+T     G   V V  + +     + ++D GPGI +     + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKESQSRIF 357

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I ++I+  HGG+  + S++ +G  +   LP  
Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411


>gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1474

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 142/293 (48%), Gaps = 14/293 (4%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             +       E+  +  +L       ++ R+ AE  N AKS FLA+MSHELRTPLN ILG+
Sbjct: 961  ALAQSQLLEEQTRISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGILGY 1020

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             +V++ E   P      ++ +  I + G+HLL L+N+ILDLS+IEA + +L  S      
Sbjct: 1021 VQVLKRE---PHPTAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQFPH 1077

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             +   I M+++RA EK I    +    L   V  DEK +RQV++NLL NA+KFT   G +
Sbjct: 1078 FLEGIIEMVRIRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQ-GSI 1136

Query: 390  HVTVGWT--------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
               VG+T        +       I+D G GIA  ++  +   F Q         +G GLG
Sbjct: 1137 TFKVGYTSAQAPATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQIGD-RNRQVEGTGLG 1195

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
            L I+Q ++   GG+  + S + +G      L    V      D  E      +
Sbjct: 1196 LAISQRLVQLLGGELHVESNVGQGSTFYVDLELPAVSPDQAIDVVEDRIISGF 1248


>gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
 gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
          Length = 918

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/467 (22%), Positives = 181/467 (38%), Gaps = 15/467 (3%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
            + P++++          +             L  A                L+      
Sbjct: 63  RQAPAQLERIAAQALEQTDVRAVAFLAADRTRLAHAGPSMLNQPPSGGTGTQLLQRTGND 122

Query: 85  ANLSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
           A   L                      L   +I +    TLL        +   + +  S
Sbjct: 123 ATRYLMPVFGHHRDLATDAVPAEAERLLGWVEIELSHDGTLLRGYRNLFTSLLLIIVCLS 182

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
            T L+A+ +S   N  +              L  +           LA  +         
Sbjct: 183 LTALLAVRMSRTINGPINRIKHTVNQLKDGHLEERLPAMGSHELDELAAGINRMAETLHS 242

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
               L  S  +      +  + I   E+     D  RK A E +  KS FLA+MSHE+RT
Sbjct: 243 AHEELQHSIDQATEDVRQNLETI---EIQNIELDMARKEALEASRIKSEFLANMSHEIRT 299

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILGF+ +++   + P       +Y+G I +S  +LL +INEILD S+IEAG+  L 
Sbjct: 300 PLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLD 355

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               +L D++++ + +L   A  K +E+       +  S+  D   ++Q++ NL+SNA+K
Sbjct: 356 SIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDTPLSLVGDPLRLKQILTNLVSNAIK 415

Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G + V       +       IS++D G G++  ++ T+  +F Q   ++     G
Sbjct: 416 FTRE-GTIVVRAMLEDDQDDTVQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLSRQPGG 474

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            GLGL I++ ++   GG+  + S   EG +    L   R  +   E 
Sbjct: 475 TGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLPRAHDDAEEQ 521


>gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 911

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 9/269 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + L  +++   +  +  ++  E+   AKS F+A MSHE+RTP+NA++G S +     + 
Sbjct: 160 NETLDRKVKERTAALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQL- 218

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N    +Y+  I  SG  LL L+N++LD S+IEAG  +L        ++VR  I M  
Sbjct: 219 ---NAEQNDYLTKIKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNS 275

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398
             A EKN+E+   I   +   +  D   ++Q+++NL++NAVKFT+ G   + ++      
Sbjct: 276 FSAYEKNLELITDIAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEE 335

Query: 399 RGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
               +   + D G GI E  + T+ +SF Q   +I     G GLGL I   +    GG  
Sbjct: 336 GHVSLKCEVSDTGIGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSI 395

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            ++S+L  G      LP  ++ +  P+  
Sbjct: 396 TVKSELGSGTTFTVHLPL-KISSHQPKAQ 423


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 143/322 (44%), Gaps = 23/322 (7%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD----------- 223
              +I    VL + L G+ A   +    +   + ++ +     +AE D            
Sbjct: 186 LLVSIALAAVLLLVLLGITARITTPLRNLAETMRQAQLGEKQVRAEMDGPKDIMDMESAF 245

Query: 224 --LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             ++  LE  +      R  A E    K  F A++SHELRTPLN +LG  E++    + P
Sbjct: 246 NTMMTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTP 305

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 +EY+     SG+ LL LI  ILD SRIE+GR++L  +   L +I+ + I +L  
Sbjct: 306 ----KQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAG 361

Query: 342 RAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +AQ K++++   +  +   S+  D   +RQ+++NL+ NAVKFT   G V V V       
Sbjct: 362 QAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQ-GEVSVEVQLLEKTA 420

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   +KD G GI       +  +F Q   +      G GLGL I + ++   GG  
Sbjct: 421 KKLVLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDI 480

Query: 457 LIRSKLREGVEVIAILPNTRVL 478
            + SK   G      +P    +
Sbjct: 481 GVESKFGGGSRFWFTVPLEEAV 502


>gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 549

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 141/259 (54%), Gaps = 11/259 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E ++ +    +T    +     K  FLA+MSHELRTPLN ILG SE ++   +G LN+
Sbjct: 142 ISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNS 201

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I  I +SG+HLL LI++ILD+S+IEAG+ EL  + + + ++    + ++   A 
Sbjct: 202 -NQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAF 260

Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            K I I   I  +L    +  D + +RQV++NLLSNA+KFT   G++++ VG  +     
Sbjct: 261 TKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAA 320

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +  Y S+ DNG GIA  ++  +   F Q   ++     G GLGL + + I+  HGG
Sbjct: 321 ISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 380

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S+L +G      LP
Sbjct: 381 CVEVSSQLGKGSCFTVYLP 399


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                +  L   +        +  +RAE  N AKS FLA+MSHE+RTP+NAILG + +++
Sbjct: 679 ELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLK 738

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +T     + T ++ +  I  + QHLL +IN+ILDLS+I+AG+  L +S  SL  ++   
Sbjct: 739 RDT----PDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNV 794

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             ++  +A+ K + I   I  + + V  D   +RQ +LN  +NA+KFT   G V + V  
Sbjct: 795 SALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANAIKFTEQ-GSVTLRVRV 853

Query: 396 T----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                 G      ++D G GI+  +   +  +F Q  ++      G GLGL I   +   
Sbjct: 854 DHPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKYGGTGLGLAITSRLATL 913

Query: 452 HGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHESTQYKCY 494
            GG+  + S L +G        L   +     P    ++ Q   +
Sbjct: 914 MGGEVGVTSTLGKGSCFWFTARLAVGQGEPQQPAALEQTVQQALF 958


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
            +    V                 ++T ++          ++    ++   E  K LSDE 
Sbjct: 968  LAEGKVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTE-LKLLSDEL 1026

Query: 238  --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I 
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKIE 1082

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            R+ + LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K +E+   + 
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
            P++   ++ D   + QV++NL++NA+KFT   G V +++     +        S++D+G 
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+   +   +  SF Q   +      G GLGL I + ++   GG   + S+   G     
Sbjct: 1202 GLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 471  I 471
             
Sbjct: 1262 T 1262


>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1055

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 9/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    + + +AE  N AKS FLA+MSHE+RTP+N ++G  +++E   +   
Sbjct: 656 RDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLETTPL--- 712

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +     YI     +   L  L+ +ILDLSR+EAG+ E+ E+   + DI+     +  + 
Sbjct: 713 -DAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVSGLFAVT 771

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400
           A+ KN+ +  ++ P +  V   DE  +RQV+ NL+ NA+KFT  G  V  +T       G
Sbjct: 772 ARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITALPAKDDG 831

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  + D G GIAE  +  +   F Q   ++    QG GLGL I Q ++   GG   
Sbjct: 832 DYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGLMGGTIT 891

Query: 458 IRSKLREGVEVIAILPNT 475
           I S L +G     +LP  
Sbjct: 892 IESTLGQGTSAHVVLPFK 909


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              + ++ +       +  +     +   W    +    A  ++G     +   +     
Sbjct: 140 TIAASVIAVVGAFAVALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199

Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           WR  +   +    L  + +  LV         L    SA   +    S L    L   V 
Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259

Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217
           +   P ++   +          +             S   +      +    +       
Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++E        D  R  AE  +  K+ FLA++SHELRTPLNAI+GFS+V+  E
Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L+ E  +EY G I +SG+HLL+++N +LD+SRI  G ++     + +  ++R C  
Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++L+A    I +     P+  ++ AD +  RQ+++NL+SNAVKFT  GGRV V V    
Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    I + D+G GI E ++P +   F Q       + +G GLGL + + +   HGG   
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 458 IRSKLREGVEVIAILPN 474
           + S   +G  V   LP 
Sbjct: 559 VESAPGKGTAVTVTLPL 575



 Score = 41.4 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112
             +  +A         P + +W  +   + A  ++ L   ++ + +      +W    L 
Sbjct: 39  FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
                G+   L  L    +       +      +++ S  A     +   V      +  
Sbjct: 99  SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAVALSG 158

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231
            L   A+       I +     TA+                        + +  E E  A
Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202

Query: 232 KSLSDETRKRA 242
           +   +E R R 
Sbjct: 203 RMQDNEARDRL 213


>gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1482

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           DL  +  V  + S+  +++  + N AKSRFLA+MSHE+RTPLN ILG ++++   ++   
Sbjct: 605 DLTDQRRVNAAESEALKEK--QANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSL--- 659

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+   +Y+G I  S Q LL +IN+ILD S+IEAG+  +     + + I    + +L   
Sbjct: 660 -NDEQSDYLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPS 718

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A  KN+ +   IDP L  V+  D    +Q+++NL+SN +KFT   G V +          
Sbjct: 719 AATKNLLLSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTT-GSVSLRCLLDEDVDD 777

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   I D G GI    +  +   F Q   +I  +  G GLGL I +S++   GG  
Sbjct: 778 QNMVVRFEIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVNLMGGTI 837

Query: 457 LIRSKLREGVEVIAIL 472
            + S L +G      +
Sbjct: 838 GVDSTLGQGSRFWFTI 853


>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 742

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 50  AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 109

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 110 HELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 165

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        + + E I +    A EK +EI  K+DP +   +  D   ++Q++ NL+
Sbjct: 166 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 225

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            N++KFT  G   V V +   +G    +   ++D G GI+E +   +  +F Q   +I  
Sbjct: 226 GNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 285

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 286 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 324


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
            phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
            phototrophica DFL-43]
          Length = 1337

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   +  ++   +   +AE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 745  ITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDT--- 801

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +   I +SG  LL +IN+ILD S+I+AG+  L      L + + +   ++  RA 
Sbjct: 802  -RQRTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAA 860

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401
            EK+IE+  +IDP+L   +  D   +RQV+ NL+ NA+KFT  G   + VT    S     
Sbjct: 861  EKDIELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSPASEGSVD 920

Query: 402  -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              + + D G GI   ++  V   F Q   +     +G GLGL I   ++A   G     S
Sbjct: 921  LTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAES 980

Query: 461  KLREGVEVIA--ILPNTRVLNFI 481
               EG        +P  +    +
Sbjct: 981  TPGEGSVFCVKITMPVEKRTETV 1003


>gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 590

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 6/236 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + R E     +  F+A++SHELRTPL  I  ++E +    +     E  +++   I+   
Sbjct: 352 QHRLEA---MRKEFVANVSHELRTPLTTIKSYAETLLDGAL--EEAEISRQFTSVINDEA 406

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             +  L++++L+LSR++    +     I +  I++  I  + +  + K   I   I   L
Sbjct: 407 DRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEEL 466

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V+AD   + QV  N+LSNA K+T  GG++++ V + + +   ++ KD G GI + ++P
Sbjct: 467 PEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEY-AEKMVKVTFKDTGVGIPKEDLP 525

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F +          G GLGL IA+ I+  HGG+  I S+L +G  VI  +P 
Sbjct: 526 RIFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIPA 581


>gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1]
 gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1]
          Length = 671

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 18/286 (6%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKS----------LSDETRKRAEEENLAKSRFLAS 255
              ++ V +   +   D L+ E    +                R  AE  N AKS FLA+
Sbjct: 234 RRKETEVALKEARKLNDKLVTEKRNVEEKEKIQQGLIENLKNARIEAESANKAKSEFLAN 293

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPL+A++G +E++   T+    ++  + Y   ++ S Q LL LIN+ILD SRIE
Sbjct: 294 ISHELRTPLHAVIGMTELLIETTL----DKDQRYYSDTLYSSAQMLLMLINDILDFSRIE 349

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374
           AGR +  +   +L  ++++ I +++ +A  K + +   ID ++ SV       ++QV+LN
Sbjct: 350 AGRIDEDKEVFNLRQLLQDIIAIMKEKASCKGLVLASDIDENIPSVISGYPGYIKQVLLN 409

Query: 375 LLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L+ NA+KFT  G         +         +S++D G GI E +   +   F Q   + 
Sbjct: 410 LIQNAIKFTYRGQVTVTVTVVSETPQDVSLKVSVQDTGIGIPEEQQHLIFNPFTQIDASS 469

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              E G GLGL I + ++A  GG+  + S  R+G      L   +V
Sbjct: 470 TRKEGGTGLGLAIVRKLIAFMGGEIQVTSSERDGSTFSFTLAFDKV 515


>gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1067

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 143/265 (53%), Gaps = 18/265 (6%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   I E + A+    + ++ A+  N AKS FLASMSHELRTPLNAILGF++V+  
Sbjct: 573 LFTAIVRDITERKQAEEALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLAR 632

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            +      E  K  +  I RSG+HLL+LIN+IL++S+IEAGR   ++S+  L  ++    
Sbjct: 633 NSA---LKEEEKTNLEIISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLE 689

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            ML+LRA+ K +++       +   +  DE  +RQV++NL+ NA+KFT  GG   VT+  
Sbjct: 690 DMLRLRAEAKGLQLIFDSASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGG---VTLRV 746

Query: 396 TSGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            SG                ++D GPGIA  EI  +  +FGQ     KS  QG GLGLPI+
Sbjct: 747 KSGGKVPLESPKMATITFEVEDTGPGIALDEIDNLFEAFGQTETGRKSN-QGTGLGLPIS 805

Query: 446 QSIMANHGGQFLIRSKLREGVEVIA 470
           +  +   GG+  + S    G     
Sbjct: 806 KKFVELMGGEIRVSSVPGNGSLFAF 830


>gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 534

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 16/324 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
            +    +   +     +  +    L  +     S    I +   KS +      A   + 
Sbjct: 196 AASQLDLAPAAEGRPRAPRLRPERLGAIADHLRSVLDLILFSGHKSLLTSTMHVASIRES 255

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             EL    +  ++  +R +E +  KS FLA++SHELRTPL +I+G+SE++     GPL +
Sbjct: 256 FRELSQKNAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIMGYSEMLAEGIGGPLTD 315

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E+I  I    + LL LI  +LDLS++E+G   +  + +++  ++ E    +   A 
Sbjct: 316 E-QREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVGPVLVEAASTIAPAAS 374

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           +K +E+  + +  L  V  D   +RQV +NL+ NAVKFT  GG V +     S       
Sbjct: 375 KKGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEVLLVARAVSEDMDDLP 434

Query: 401 -----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        I + D G GI  GE   V   F Q   +      G GLGL I + ++
Sbjct: 435 GLVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTREHGGTGLGLSIVKRLV 494

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             H G   I      G   +  LP
Sbjct: 495 EAHSGTVRIEPNDPRGTVFVVKLP 518


>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 890

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +D+L A ++      ++  + AE    AKS FLA+MSHE+RTP+NAILG + +     + 
Sbjct: 132 RDELFAVMQTKNQELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRLD 191

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P       +Y+G I RS QHLL +IN+ILD S+IEAG+ +L +    L  ++     ++ 
Sbjct: 192 P----QQADYVGKIQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVG 247

Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-- 397
            +A+ K IE+  ++D  L ++ + D   + Q+++N  +NAVKFT   G + V V      
Sbjct: 248 EKAEAKGIELLFEVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQ-GEILVKVTCLEKL 306

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 + S++D G G+++ +   +  SF Q   +      G GLGL I++ + A  GG+
Sbjct: 307 PKEVLLHCSVQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGE 366

Query: 456 FLIRSKLREGVEVIAI 471
             ++S+  +G      
Sbjct: 367 VGVQSEPGKGSTFWFT 382


>gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 659

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 22/343 (6%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A++ S +                ++   T  ++      I+      TA         +
Sbjct: 155 VAITESVIIEGQQRIVYSSFTVAALLMFLTYLLIRNMARSIANPIEQLTAGVELIKNGDY 214

Query: 207 LFKSN----VKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLAS 255
             ++     +++   +   + L   LE A     E        R  AE  + AKS FLA 
Sbjct: 215 RTRAPDIRGLELSRLRNSINQLAVALEKASVEQTEHLGMIETARNEAESASKAKSEFLAI 274

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTP+N +LG  ++++        +E  KEY     RS +HL+ +I++ILD S+IE
Sbjct: 275 MSHELRTPMNGVLGMLQLLQET----QQDEEQKEYTHVAMRSTEHLIAIIDDILDFSKIE 330

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVIL 373
            GR  +     +L  +V E +   + + +EK + + Q+ +  L  + V AD   +RQV+ 
Sbjct: 331 RGRLSIDPIEFNLRALVEETLNAFRPQVEEKGLLLHQEYEGELQDALVTADPARIRQVLA 390

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL++NA+KFTA  G + V   W       +     ++D+G GIA  +   + +SF Q   
Sbjct: 391 NLINNAIKFTAE-GYIRVHANWEEIGADKVCFTCEVEDSGIGIAPEQQRRMFSSFQQADQ 449

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL IA+ ++    G+  + S+  +G      L
Sbjct: 450 SNSRRYGGTGLGLAIAKRLLELMEGEIFVESESGKGSCFKFAL 492


>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
 gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
           turicensis z3032]
          Length = 919

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +LI ++ + L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IAISLLMMLICMACAVLFAWRLMRDV---TAPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL++IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTP----TQRDHLNTIERSANNLLSIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   A +K +E+   +   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QVI NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHI 516


>gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 587

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHELRTP+ +I GF E +        + E+   Y+  I      L  L
Sbjct: 360 LEQMRRDFVANVSHELRTPMTSIQGFVEALLDGL--AEDKESQDRYLNVILDETVRLNRL 417

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++++LDLSR+E G        I L  +  +    LQ +  ++ + +      ++S+V  +
Sbjct: 418 VSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTGN 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV++NLL NA+ FT  GG++ ++     G    + + D G GI   E   +   F
Sbjct: 478 RDRIQQVLINLLGNAISFTPPGGKITLSAK-DVGDKVEVQVTDTGMGIPPEEQDKIWERF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   A   +  G GLGL I + I+  HGG   + S   +G      L
Sbjct: 537 HKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPGKGSTFYFTL 584


>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
 gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
          Length = 918

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + + + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QVI NL+ NA+KFT  GG + + V   +         + I+D G GI E +   + 
Sbjct: 407 LRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 13/255 (5%)

Query: 225  IAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            IA +   K LSDE    ++ A+  N AKS FLA+MSHE+RTP+NAI+G S++     +  
Sbjct: 1010 IANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL-- 1067

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +   + Y+  I R+ + LL +IN+ILD S+IEAG+ ++      L  I+ +   M  +
Sbjct: 1068 --DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSV 1125

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            +A +K +E+   + P +   +  D   + QV++NL++NA+KFT   G V +++   +   
Sbjct: 1126 KAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTER-GEVMLSISELARDE 1184

Query: 401  ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   +++D+G G+   +   +  SF Q   +      G GLGL I + ++   GG+ 
Sbjct: 1185 DQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEI 1244

Query: 457  LIRSKLREGVEVIAI 471
             + S+   G      
Sbjct: 1245 GVDSQFGNGSTFYFT 1259


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 16/379 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           +C  ++ +    +     +   +     +A+ +++  +++               L  Q 
Sbjct: 405 VCIGVIEVGLLHSPDSLEVAFLEHNLEAMAIGVNSALDYIRLQNFLEETQAQAEELQAQH 464

Query: 179 IMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               ++       A  L  +          L ++N ++       ++   E++       
Sbjct: 465 TEMENLNAELEMQAQKLQASEEELRVQQEELQQTNTELEERGLLLEEKNDEIQKKADEL- 523

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                 E     KS FLA+MSHELRTPLN+IL  S ++       L  +   EY   I  
Sbjct: 524 ------ELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATLTPDQV-EYARVIQS 576

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG  LL LI+EILDLS+IEAG+ +L    +S+ +I  E   +  L A+EK ++    + P
Sbjct: 577 SGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAITVKP 636

Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQYISIKDNGPGIA 413
            + +V   D   + Q++ NLLSNA+KFT+  G+V + +  +  +       +KD G GI 
Sbjct: 637 DVPTVIETDRMRLGQILKNLLSNAIKFTSS-GQVSLRIERSTSAASTLCFVVKDTGIGIP 695

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             + P V  +F Q   + K    G GLGL I++ +    GG+  + S++  G E   +LP
Sbjct: 696 PEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSSEVNVGSEFTILLP 755

Query: 474 NTRVLNF--IPEDNHESTQ 490
            ++ +     PE      Q
Sbjct: 756 LSKDMPEAVSPEIPKPEPQ 774


>gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 722

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/467 (23%), Positives = 188/467 (40%), Gaps = 38/467 (8%)

Query: 39  TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVMNSD 97
            L ++S +  +  L +++LL+      F     +   W  I  +     L     ++   
Sbjct: 12  RLLLQSHYYEADKLMMWILLIHAFVAIFVTANYYNTYWLGIVGSAVILTLCSAAFILLRG 71

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157
                +      +L   I I      + +          LTIYK    +   + + L + 
Sbjct: 72  TLWFRLIAAVAIMLFSAIYIQQHLGRIEMHFHVFIGLAILTIYKDVVPMFIATAAILIHH 131

Query: 158 MLPYAVFLS-FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           +L   +           +   +        I    M+       TYI  +  +  ++++ 
Sbjct: 132 LLFNWMQSLHVILGNEPVMIFSYGCGTEYVILHGVMVIAETVLLTYIIKNSAQQFIEVIR 191

Query: 217 CQAEKDDLIAELEVAKSLSDE-------------------------TRKRAEEENLAKSR 251
            Q   D    +L       +E                          ++ A   N  KS 
Sbjct: 192 AQEALDISNQQLSRFNITLEEQVRLRTQELESALQKHIGMAEDLKMAKEEAVSANQLKSE 251

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN+++GFS+++E E           +Y+  I   G+ LL+LIN ILDL
Sbjct: 252 FLANMSHEIRTPLNSVIGFSDLLEQEV----KEPKQVQYLHAIKNGGKALLSLINNILDL 307

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IE+G  ++    +     +RE + M     ++K +E+  +I+ +L   + ADE  +RQ
Sbjct: 308 SKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVTYEIEKNLPEWIIADEIRIRQ 367

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFG 425
           ++ NL+SNA+KFT   G V ++V  T  +         SIKD G GI+      +  +F 
Sbjct: 368 ILFNLISNAIKFTEK-GSVRLSVLSTPSKNEGFVDLIFSIKDTGIGISPKNQIKIFDAFI 426

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q          G GLGL I + +     G   I S+L +G E    +
Sbjct: 427 QNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGSEFTFTI 473


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/410 (26%), Positives = 171/410 (41%), Gaps = 29/410 (7%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +    +  +G+  +    + +  +  G       L          L I     +L  L +
Sbjct: 600  RFALGEGLVGQAALEAKQITIDNVPPGSITVETGLSRSTPAQIVVLPIQFEDQVLGVLEL 659

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITY 205
            ++ ++F   +  FL+ F      +   I +    +  L      A               
Sbjct: 660  ASFTSFSEVHMAFLTQFVEATGPTINTIKANSRTEALLKESQRLATELQKRSDELQRQQE 719

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++    A        +E+     ++ R+  EE        +  KS FLA+MSH
Sbjct: 720  ELRRSNAELEEKAALLAKQNRAIEIQNFQIEQARRALEERAEQLAISSRYKSEFLANMSH 779

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++     G L      E+   IH +G  LL LIN+ILDLS++EAGR
Sbjct: 780  ELRTPLNSLLVLAKLLADNAEGNLT-PRQVEFAKTIHEAGTALLQLINDILDLSKVEAGR 838

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             ++    ISL  +V          A++K +    ++DPS    ++ DE+ ++QV+ NLLS
Sbjct: 839  MDIHPQQISLPRLVEYMEATFAPLAEDKELAFTVRLDPSAPQEIYTDEQRLQQVLRNLLS 898

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSF 424
            NA+KFT   G V + VG      QY               + D G GIA  ++  +  +F
Sbjct: 899  NAIKFTHE-GEVRLEVGRAPADVQYADEALKNTPDMLAFRVIDTGIGIAPNKLDVIFEAF 957

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q          G GLGL I + I    GG+  + S   EG      LP 
Sbjct: 958  RQADGTTSRKYGGTGLGLSICRQIARLLGGEIHVASTPGEGSTFTLYLPA 1007


>gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1099

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 34/381 (8%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
             +        +     +   ++ I      + A         +      L   P ++A 
Sbjct: 616 APLSAADDSPVIDRVLNYFIPFVAIILFIQAIYAAIKRVKFANLFLLFYVLCISPFILAF 675

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                 S  ++ I+      + L       Y++ +    +   QAE              
Sbjct: 676 VITFSGSDGMIRIAYVLWTLSTLGLMLITAYYIKQ----LREDQAE-------------- 717

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               +++A+    AK +FLA+MSHE+RTP+NAI G ++++          +  KEY+  I
Sbjct: 718 ----KEKAQASERAKHQFLANMSHEIRTPMNAIKGMTDILLRR----NPKDDQKEYLEGI 769

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +S   LL +IN+ILD+S+IEAG+ EL     S++++V     ++Q +A+EK +E+ + I
Sbjct: 770 KQSSDSLLIIINDILDISKIEAGKVELENEPFSVVELVNNVHTIMQFKAEEKGLELLKDI 829

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPG 411
                +V  D   +RQ++LNL+ NA+KFT   G V  +V           +  I D G G
Sbjct: 830 PEENLTVQGDATRLRQILLNLIGNAIKFTEK-GVVTTSVKSEQSGEKVNVHFIISDTGIG 888

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +  +  +  SF Q          G GLGL I++ ++  HGG+  + S+  +G +    
Sbjct: 889 IDQDRMDKIFKSFEQAYSDTSRKFGGTGLGLSISKKLVELHGGKIWVESEKGKGSQFHFT 948

Query: 472 LPN----TRVLNFIPEDNHES 488
           +P     T V    PED + +
Sbjct: 949 IPYVIAGTAVDTPQPEDANAN 969


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 10/243 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            + + ++ AE+    KS FLA+MSHE+RTP+N I+G S +     + P      ++Y+  
Sbjct: 130 AAHQAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDP----RQRDYVKK 185

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I ++G+HLL +IN+ILD S+IEAG+  + E    + +++     M+  +  EKN+E+   
Sbjct: 186 IQQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFH 245

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
               L   +  D   + Q+++N  +NA+KFT   G V ++               ++ D 
Sbjct: 246 FPQDLPHKLIGDPLRLSQILINYGNNAIKFTEK-GEVIISAEILERDDEGIFIKFNVSDT 304

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + +   +  SF Q   +      G GLGL IA+ +    GG+  + S+  +G   
Sbjct: 305 GIGLTKEQKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTF 364

Query: 469 IAI 471
              
Sbjct: 365 WFT 367


>gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
 gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein
 gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
          Length = 842

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/289 (35%), Positives = 153/289 (52%), Gaps = 4/289 (1%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             M A  ++          ++  ++ +  A  +    +L       +  + +AE  N AK
Sbjct: 542 LVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAESANKAK 601

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLNAI GFSE++  E  GPL ++ YK Y  DIH SGQHLL LIN+IL
Sbjct: 602 SEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDIL 661

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S+IEAG+  L   ++ L D+  + + +++ RA+   +++     P L  + AD + ++
Sbjct: 662 DMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEADYRAVK 720

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           QV+LNLLSNA+KFT   G V V              +S+ D G GIA+ ++  +   F Q
Sbjct: 721 QVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQ 780

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                    QG GLGL + +S++  H G   + S   EG  V   LP  
Sbjct: 781 VESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829


>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 788

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 161/345 (46%), Gaps = 17/345 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
               +  I+         + S++ +  L   +          L    ++S  ++   L  
Sbjct: 285 QNQAHPLIHLKTVDTTHHADSSIQSAKLVIGILACLGT-FSGLLLAWMISRGIVSPILEL 343

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
             +  L     + + +       +  Q E   L              ++ AE+ +  KS 
Sbjct: 344 SQSAELIASGNVEHRI------SIDSQDEIGRLAETFNRMVEDLVIAQQDAEKASHIKSS 397

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+ AILGF+E+++       ++     +I  I ++G++LL LIN+ILD+
Sbjct: 398 FLANMSHEIRTPMTAILGFAEIMKQR----NDDPEMSRHIDTIRKNGEYLLELINDILDV 453

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEA + E+     SLI+++ +   ++++RA ++ +++  KID S+   + +D   +RQ
Sbjct: 454 SKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGSIPRWIQSDPVRLRQ 513

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +++NLLSNA+KFT   G V + V      T+       + D+G G+ + +I  +   F Q
Sbjct: 514 ILINLLSNAIKFTRQ-GHVQLIVTASSIDTNEPVIQFDVIDSGIGMTDEQISRLFQPFMQ 572

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +      G GLGL I + +    GG+  + S+   G      
Sbjct: 573 ADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFSVT 617


>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
           265]
          Length = 869

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 9/282 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             ++   T       +    +     E ++    LE +   +++    A + N+AKS+FL
Sbjct: 169 VASVVILTSDISPRKQLERDLQQSFGELEEFNRRLEESVLKTEQMAAEARDANVAKSQFL 228

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+N ++G ++++    +        ++Y   I RS + LL +IN+ILD S+
Sbjct: 229 ANMSHEIRTPMNGVIGMADLLLETALDT----EQRKYAQTIIRSARSLLKIINDILDFSK 284

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           IEA R+EL  S   L D++ E   +L + A E  +E+   + P + + +  D   +RQ++
Sbjct: 285 IEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLIGDSGRIRQIL 344

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +NLL NAVKFT +GG V V +       ++     S+ D G GI   ++ ++   F Q  
Sbjct: 345 VNLLGNAVKFTPVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQAD 404

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            +      G GLGL I+  +    GG+  + S   EG     
Sbjct: 405 GSTARKYGGTGLGLSISNHLATRMGGRINVESHPGEGSVFSF 446


>gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 579

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   +++   +++  I +  + L +L
Sbjct: 349 LEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSL 406

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS++E   + +   +     I+ E   +LQ +A EK I     +      V  D
Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL +NA+ +T   G V ++V         I + D G GI + EIP +   F
Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISVN-VKETVVDIKVSDTGIGIQKEEIPRIFERF 525

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G   + S+  +G      L
Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573


>gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 579

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    M   +++   +++  I +  + L +L
Sbjct: 349 LEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSL 406

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS++E   + +   +     I+ E   +LQ +A EK I     +      V  D
Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL +NA+ +T   G V ++V         I + D G GI + EIP +   F
Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISVN-VKETVVDIKVSDTGIGIQKEEIPRIFERF 525

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G   + S+  +G      L
Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573


>gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 754

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 7/254 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +  +    + R  AEE    KS FLA+MSHE+RTP+N ++G ++++E   +  
Sbjct: 353 ERDVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL-- 410

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  K Y   I  S + LL+LIN++LDLS+++AG   LSE    L    ++ + + + 
Sbjct: 411 --DEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEP 468

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399
           +AQEK I +   I P +  +   D++ +RQV+LNL+ NAVKFT  GG  V VT      R
Sbjct: 469 QAQEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDR 528

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G GIA+ +   +   F Q   AI     G GLGL I++ +    GG+  +
Sbjct: 529 LRLRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDV 588

Query: 459 RSKLREGVEVIAIL 472
            S   +G      L
Sbjct: 589 TSDPGKGSCFSVHL 602


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              + ++ +       +  +     +   W    +    A  ++G     +   +     
Sbjct: 142 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 201

Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           WR  +   +    L  + +  LV         L    SA   +    S L    L   V 
Sbjct: 202 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 261

Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217
           +   P ++   +          +             S   +      +    +       
Sbjct: 262 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 321

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++E        D  R  AE  +  K+ FLA++SHELRTPLNAI+GFS+V+  E
Sbjct: 322 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 381

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L+ E  +EY G I +SG+HLL+++N +LD+SRI  G ++     + +  ++R C  
Sbjct: 382 GAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 441

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++L+A    I +     P+  ++ AD +  RQ+++NL+SNAVKFT  GGRV V V    
Sbjct: 442 LMRLKADASGIALTSAPVPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 500

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    I + D+G GI E ++P +   F Q       + +G GLGL + + +   HGG   
Sbjct: 501 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 560

Query: 458 IRSKLREGVEVIAILPN 474
           + S   +G  V   LP 
Sbjct: 561 VESAPGKGTAVTVTLPL 577



 Score = 41.8 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112
             +  +A         P + +W  +   + A  ++ L   ++ + +      +W    L 
Sbjct: 41  FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 100

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
                G+   L  L    +       +      +++ S  A     +   V      +  
Sbjct: 101 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 160

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231
            L   A+       I +     TA+                        + +  E E  A
Sbjct: 161 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 204

Query: 232 KSLSDETRKRA 242
           +   +E R R 
Sbjct: 205 RMQDNEARDRL 215


>gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3]
 gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 935

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + E I ++   AQ K +E+   I P++   V  D 
Sbjct: 355 DILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   +     +   + D G GI E +   +  
Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTGIGIDENQQDFLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 526


>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1162

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 155/283 (54%), Gaps = 20/283 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ + A+    + ++ AE  N AKS FLA+MSHELRTPLN+ILGF++++          
Sbjct: 678 ISDRKQAELELRQAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLMS---YENNLT 734

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + +E +  I+RSG+HLL+LIN+ILDLS+IE+GR  L+ S   LI+++     MLQ++ Q
Sbjct: 735 SSLQERLQIINRSGRHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVKVQ 794

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K++++  + +  L + V  DEK + QV++NLLSNA+KFT   G + + V          
Sbjct: 795 SKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSNALKFTQQ-GSITLRVRAEQKEKHSC 853

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G GIA  EI  +   F Q   A  +  QG GLGL I+Q ++   GGQ  ++
Sbjct: 854 RLCFEVEDTGVGIAPTEIDKLFKVFVQA-QAGNNLSQGTGLGLAISQKLVQLMGGQIQVQ 912

Query: 460 SKLREGVEVIA----------ILPNTRVLNFIPEDNHESTQYK 492
           S L  G                LP+ ++   +     E   Y+
Sbjct: 913 STLNRGSTFSFEIKVQLSQIASLPSEQINQRVISLAPEQPNYR 955


>gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 178/374 (47%), Gaps = 13/374 (3%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
           +GL W L+ +V P +     +      TL + L    ++ F+          P++     
Sbjct: 321 LGLDW-LIAIVIPESDFMAQIYANIRTTLALCLGALGIATFLGILTSRWILQPILRLQIA 379

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLS 235
              ++   LD ++       LS        + +   +      + +  L   ++   +  
Sbjct: 380 SNSLAAGQLDQAIEVKGIHELSSLGSAFNSMARQLQESFQALEDNNAKLDQRVQQRTAEL 439

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +++AE  N AKS F+A+MSHELRTPLN ILG+++V+E     P  ++  ++ +  IH
Sbjct: 440 KVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQQQVHIIH 496

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           + G HLL +IN+ILDLS+IEAG+ +L    + L   ++      ++RA +K +E    +D
Sbjct: 497 KCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVD 556

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHV-TVGWTSGRGQYISIKDNGP 410
           P L   V  DE+ +RQV+ NLLSNA+KFT  G    +V V  V  +  R     + D G 
Sbjct: 557 PGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRFGVTDTGV 616

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA   +  +  +F Q     +   +G GLGL I++ ++   G Q  ++S + +G +   
Sbjct: 617 GIAPAHLDQLFNAFVQVGD-RQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFSF 675

Query: 471 IL--PNTRVLNFIP 482
            L  P        P
Sbjct: 676 ELEVPLATEWELSP 689


>gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 578

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +    +   + E   E++  I +  + L +L
Sbjct: 349 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGALD--DREALLEFLSIILKESERLQSL 406

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++LDLS+IE   + LS        ++ E   +LQ +A EK+I     I      V  D
Sbjct: 407 VQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKASEKDIRFELNIPKDPLYVQGD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV LNL +NA+ +T   G V ++        Q I + D G GI + EIP +   F
Sbjct: 467 VYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDIQ-IEVADTGIGIEKEEIPRIFERF 525

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL I + ++  H G+  ++S+  +G   I  L
Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQGQGTIFIVAL 573


>gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 918

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 143/277 (51%), Gaps = 9/277 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  I   + +  +     +  + DL A +    S   E + +AE  N AKS FLA+MSHE
Sbjct: 365 YVAIQKDITQKKLMDEELEIYRRDLEALVVKRTSEMFEAKTQAEAANKAKSEFLANMSHE 424

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+GF+E+     +    ++  K+Y+     + Q LL++INE+LDLS+IEAG++
Sbjct: 425 IRTPMNAIIGFNELCLRTQL----SDKQKDYLTKAGSAAQSLLHIINEVLDLSKIEAGQH 480

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLS 377
            L    + +  +V+    ++ + A +K + I   +D  +    +  D   ++Q++LNL S
Sbjct: 481 MLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIEQYPLRGDPMRLQQILLNLCS 540

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KF+  G   +   +G  SG+      +++D+G GI+  ++  +   F Q   +    
Sbjct: 541 NAIKFSTQGSISIRCQLGAISGQAVELKFAVQDSGIGISPAQLGLLFKPFSQADSSTTRR 600

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             G GLGL I + ++   GG+  + S+   G      
Sbjct: 601 FGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFT 637


>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 872

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 10/287 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +       L +        +  KD L  E++   +     R  AE  N AKS FL+SMS
Sbjct: 364 LYLISAVLDLSERKQAENELKRYKDHLEEEVQQRTADLVLARDAAEAANRAKSVFLSSMS 423

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAILGFS ++  +TM        +E +  I+RSG+HLL+LIN++L++++IEAG
Sbjct: 424 HELRTPLNAILGFSALMSRDTMLSH---IQRENLNIINRSGEHLLSLINDVLEMAKIEAG 480

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R ++   A  L  +VR+   M+ +RAQEK +++           +  DE  +RQV++NL+
Sbjct: 481 RVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSDFPRYIMGDEARLRQVLINLV 540

Query: 377 SNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NAVKFT  GG + +  G           I ++D+G GI   +   +  +F Q      S
Sbjct: 541 GNAVKFTQHGG-ITMRFGIKPNLLPERLLIEVEDSGIGIKPEDQQRIFDAFVQIGDL--S 597

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           A++G GLGL I +  +   GG   + S    G      LP  +V   
Sbjct: 598 AQKGTGLGLTITRQFVQLMGGVITLESTPGVGAVFSVELPIEKVSPA 644


>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
 gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
 gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
 gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
 gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli UTI89]
 gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
           [Escherichia coli APEC O1]
 gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli S88]
 gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli ED1a]
 gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
 gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
 gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
          Length = 918

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S    G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516


>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 931

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/340 (27%), Positives = 159/340 (46%), Gaps = 23/340 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212
             +     P+   +S    +    LDI + G L   L        +    ++ +  +   
Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    ++  + + +LE+     D  +KRA+E    KS FLA+MSHELRTPLN ++GF+ 
Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +    N + K+Y+  I  S  +LL +IN+ILD S++EAG+  L        D +
Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388
            E + +L   A EK +E+  KID  +   +  D   ++QV+ NL+ NAVKFT  G     
Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDNRIPPGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +     +       ++D G GI+E +   +  +F Q   +I     G GLGL I Q +
Sbjct: 430 VELKSDIDNNIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489

Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
           ++  GG+  + S+L +G             LP ++ ++  
Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIKMNKTDLPVSQPIDTT 529


>gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 545

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 12/270 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + V     + EKDD    L V        ++ AEE +  KS FLA++SHELRTPL 
Sbjct: 281 QLLATAVGAGLQRLEKDDETNRLRV-------AKEAAEEADRTKSGFLATVSHELRTPLT 333

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+G+SE++  +     N   Y   +  +H +GQHLL LIN+ILD S+IEAG+ E++   
Sbjct: 334 TIIGYSEMLLEQA-AVDNLPQYTADLQQVHSAGQHLLALINDILDFSKIEAGKLEIANDP 392

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +   ++ + ++ ++  A++ N  I     P L     D   +RQ +LNL+ NA KFT  
Sbjct: 393 YAPASLIHDLMVSVEPLAKKNNNRIELDCPPDLGRAMGDPTRIRQCVLNLVGNACKFT-R 451

Query: 386 GGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G V VT      +      +++ D G G+   ++  +  +F Q          G GLGL
Sbjct: 452 DGLVKVTARRAPVSGVDSVQVAVSDTGIGMTPEQVGRLFQAFTQVDSTAGRKFGGTGLGL 511

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I+Q + A  GGQ  +RS+  +G      +
Sbjct: 512 AISQRLCAAMGGQITVRSEPGKGSTFTMTI 541


>gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B]
 gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B]
          Length = 465

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 134/244 (54%), Gaps = 9/244 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +   ++ ++ +  K+ F+A++SHELRTPL AI  ++E +       ++ E+ +E++  ++
Sbjct: 228 EIELEKLKQLDKMKTEFVANISHELRTPLTAIKAYTETLLN---MEVDRESQREFLETVY 284

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
              + L +L+N++LD + IE+G  EL  S   L ++++E +  L+  A++  ++I    +
Sbjct: 285 EQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSCE 344

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGI 412
               S+ AD++ ++Q I NL+ N++KF+        V+++V         I I+DNG GI
Sbjct: 345 S--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSII-IEDNGIGI 401

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++ +   +   F +G  ++     G GLGL I Q I+  HGG+  + S L EG     ++
Sbjct: 402 SQEDKEKIFEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTFELVI 461

Query: 473 PNTR 476
           P  +
Sbjct: 462 PYRK 465


>gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 919

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 13/251 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +++  E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDL 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  +   LL LI++ILDLS+IEAG +E +     +  +  + +   Q++  
Sbjct: 737 EERREYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 796

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+     PS  SV +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 797 Q-GVELVFDPHPSECSVVSDRNRLHQVISNFVNNALKFTSSGS---IRVGYEEKEECVEF 852

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI  G++P +   F +      +   G GLGL I +SI+   GG   + S+  
Sbjct: 853 YVRDTGIGIPAGQLPHIFERFVKL----NTFIHGTGLGLSICKSIVEQLGGVIGVDSEEG 908

Query: 464 EGVEVIAILPN 474
           +G      +P 
Sbjct: 909 KGSRFWFTIPK 919


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 16/370 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L W  L L   GT    Y +++ S  L+   L+++AL    +  ++      +   ++  
Sbjct: 148 LGWVELELSHQGTLLIGYRSLFASLLLIAGGLAVTALLALRMGRSINEPLRAIKAGVAQL 207

Query: 178 -----AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                      +    +  + A        +     +    I     +    +  +E+  
Sbjct: 208 KDGHLETRLPPLGSHEMDELAAGINRMAEALQNAQEELQHSIEQATEDVRQNLETIEIQN 267

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P      ++Y+ 
Sbjct: 268 IELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLA 323

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351
            I +S   LL +INE+LD S+IEAG+  L     +L D++++ + +L   A EK +E+  
Sbjct: 324 TIEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELIS 383

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408
                +  ++  D   ++QV+ NL+SNA+KFT  G  V    V           IS+ D 
Sbjct: 384 LIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDT 443

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+++ ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E 
Sbjct: 444 GIGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 503

Query: 469 IA--ILPNTR 476
                LP  R
Sbjct: 504 WISLSLPKAR 513


>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1005

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 24/330 (7%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--------------FTYITYHL 207
            +F+    + + ++   +    +  I     +    +                       
Sbjct: 172 LMFIFSLTIFLIMAFIFLWKRVIRPIVFISKILPEYAIGSDLEPLKWKYNDEIGIFVNTF 231

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +  K    + E   +  +L        + R  AE+ + AKS FLA+MSHE+RTPLN I
Sbjct: 232 NDTLEKRNEWENELTLINRQLLNTNKDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGI 291

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G ++++    +        K+Y+  I RS + LL ++N++LDLS+IEAG+  +      
Sbjct: 292 IGLTKLMLDLELSN----KQKDYMRKIDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFV 347

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
              + +    +  ++ +EK +E+F +IDP +   +  D   ++QV++NL+SNAVKFT   
Sbjct: 348 FESVFKSIDDLFTIKIEEKGLELFFEIDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDE- 406

Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G +H+    T           S++D G GI   E+  + T+F Q         +G GLGL
Sbjct: 407 GEIHIKAEVTEITDSDISILFSVRDTGVGIPANELEKIFTAFTQVDETSTRRYEGTGLGL 466

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I +++++  GG   + S +  G      L
Sbjct: 467 AITKNLVSMMGGTVTVESDINMGSIFSFKL 496


>gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 622

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+R E     +  F+ ++SHEL+TP+ AI G +E +  E + P   E  + ++  IHR 
Sbjct: 385 ERRRLE---QVRKEFVTNVSHELKTPVTAICGLAETVVEEDLAP---EERRHFLELIHRE 438

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  L+ ++LDLSR+E+    L    + L ++ R+ +      A++   +++   +  
Sbjct: 439 ARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMARDVVQDYGYAAEQAGTDLYLDKEGD 498

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
                 D   +RQV+ NL+ NA+K+T  GGRV V V  T  R   + + D G GI   + 
Sbjct: 499 -CRAEVDPDRVRQVLSNLIDNALKYTPAGGRVDVRVLGTDPREVKVEVADTGVGIPPEDR 557

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V   F +   A      G GLGL I + ++  HGG+  + S++ +G       P    
Sbjct: 558 DRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLHGGRVGVESEVGKGSRFFVQFPRRWP 617

Query: 478 LNFIP 482
            + +P
Sbjct: 618 PDSLP 622


>gi|284052131|ref|ZP_06382341.1| periplasmic sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570319|dbj|BAI92591.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 573

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 161/379 (42%), Gaps = 39/379 (10%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDIS 188
           +P    +Y  +   + L+++      L      +   +     +     AI+   +L   
Sbjct: 190 SPAATNLYNLSGEALQLAVNFRDRADLALVELQTGQSIARNIILISLLTAIVLGWLLAKY 249

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILS-------------CQAEKDDLIAELEVAKSLS 235
               +A  +     I   + + +   L                   + LI  +       
Sbjct: 250 TGQAIADPIEQMISIADQVGEDSDFALRIPLTEDQNTEIGKLTTTLNQLIKRVAQYTEEL 309

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + +  AE  N +KS FLA+MSHELRTPLNAI+G+SE++  E+     ++   + +  I 
Sbjct: 310 QKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPD-LERIQ 368

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +G+HLL++I++ILD+S+IEAG   L     ++  ++ + +       ++    +  K  
Sbjct: 369 TAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNQNALKVKTA 428

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------- 398
             L +++AD   +RQV+LNLLSNA KFT   G + + V   +                  
Sbjct: 429 KDLGTMYADLPKVRQVLLNLLSNASKFTDK-GTITLQVQRVTKIPNEWKKDTSNAERFAS 487

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +     +KD G G+ + ++  +  +F Q   +      G GLGL I+Q +    GG 
Sbjct: 488 AKTQYLVFQVKDTGIGMNQEQVQHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILGGG 547

Query: 456 FLIRSKLREGVEVIAILPN 474
             ++S+   G   +  LP 
Sbjct: 548 IYVKSREGVGSTFVVWLPV 566


>gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
 gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
          Length = 903

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 15/274 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + LI E  + +    + ++ AE+ N+AKS FLA+MSHE+RTPLN ++G S ++    + P
Sbjct: 355 NKLIEERHINEKQIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTKLTP 414

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
               + ++++  I  S Q LL LIN+ILD S+IE+G   ++     L +++ + + ++  
Sbjct: 415 ----SQQDHLAIIENSSQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITP 470

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WT 396
            A  KN++    I P L      DE  +RQV++NLLSNAVKFT   G+V +T+       
Sbjct: 471 SAAAKNLDFSVNIAPELPNEFLLDEHRLRQVLMNLLSNAVKFTDS-GQVSLTLSSKVIEN 529

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           S    Y S+ D G GI E +   +   F Q   +I     G GLGL I+  ++   GG+ 
Sbjct: 530 SRSELYFSVADTGTGIEEDKQQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEI 589

Query: 457 LIRSKLREGVEVIAILPNT-----RVLNFIPEDN 485
            + S   +G      +        RV   +P + 
Sbjct: 590 GVDSTKGQGSNFYFTIEAEFTAEVRVQKIVPTNT 623


>gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 789

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 141/263 (53%), Gaps = 8/263 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + +    +L  +++      +  ++  EE   AKS F+A MSHE+RTP+NA++G S +  
Sbjct: 157 ALETINQELDRKVQERTKELENAKRIVEESLEAKSSFVARMSHEIRTPINAVIGLSHLAL 216

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++    N   ++YI  I  SG++LL+L+N++LD S+IEAG+  + E   S   IV+  
Sbjct: 217 KTSL----NHEQQDYINTILSSGENLLSLVNDVLDFSKIEAGKMGIEEVPFSPKSIVQHA 272

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           I M  ++A+EK + +   I PSL   +  D   ++QV++NL++NAVKFT  GG  V +  
Sbjct: 273 INMNAIKAEEKKLTVTVDISPSLPPMLLGDPLHIQQVLVNLVTNAVKFTERGGVCVRMYT 332

Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                +   +   + D G GI++  +  +  SF Q   ++     G GLGL I++ + + 
Sbjct: 333 DENDDKSVLLRCDVIDTGIGISKAYLDQLFQSFHQADDSVTRKFGGTGLGLTISRQLCSL 392

Query: 452 HGGQFLIRSKLREGVEVIAILPN 474
             G   + S+L +G     +LP 
Sbjct: 393 MSGDIWVHSELGQGSTFSFVLPL 415


>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 1092

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 10/285 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L +               I +L+ A       +  AE     K +FLA+MSHE+RTP+N
Sbjct: 544 RLVRDKDSREVTIEGVARDITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMN 603

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G  +++    +    N     ++  I RS + LL ++N+ILDLS+IEAG+ ++    
Sbjct: 604 GVIGMVDLLSQTQL----NPEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHI 659

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             +  +  + + +   +A +K+I++  KID  +   +  DE  + Q+I NL SNA+KFT 
Sbjct: 660 TEVKSVFDKVLNLFSQQANQKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTE 719

Query: 385 IGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G+V + +          I+++D G GI+E +   +   F Q   +   A  G GLGL 
Sbjct: 720 KEGKVLLHISKEIKDNLYRIAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLA 779

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           I++ + +  GGQ  + S+  EG      L    V     E   E+
Sbjct: 780 ISKQLSSLMGGQIGVSSEPDEGSVFWFTL----VGEQASEAEIEA 820


>gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 470

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 156/352 (44%), Gaps = 14/352 (3%)

Query: 129 PGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVALSTQ---AIMSMHV 184
                     +     L+I      A+        +  +   + + +      A++   V
Sbjct: 128 YFGGRFNQPVLTVGVPLVIKGRIEGAIFMHAPLTEMNKTIINIFLLMLLSGGVALIIGFV 187

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L    +  ++  L   +     L K N        E+D++    +    ++ E     E+
Sbjct: 188 LISYTSSKISQPLKEMSLAVQQLAKGNFSARVQHREEDEIGELAKSFNVMAKE----LEQ 243

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHELR+PL +I G+ + I     G +  E   +Y+  + +  + +  L
Sbjct: 244 LEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPVEKACDYLKIVQKETRRMSRL 300

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I++ L+++++E+G++ L ++   + +++R  +I  + R  EK++ +    +     V AD
Sbjct: 301 IDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIAD 360

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  + QV+ NL+ NA+KF+   G +H+    T     +I+IKDNG GI+  +   +   F
Sbjct: 361 KDKIEQVLSNLIDNAIKFSKEKGIIHI-FTETKDDKVFITIKDNGIGISPEDQEHIWDRF 419

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   +    + G GLGL I + I+  H  +  + SK+  G      LP  +
Sbjct: 420 YKADKS--RGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              +    +   + E +D   +LE+    S+    +A+  N+AKS FLA+MSHE+RTP+N
Sbjct: 256 RQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLANMAKSEFLANMSHEIRTPMN 315

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G   ++    +        KEY   +  S   LL +IN+ILD S+IEAG+ +L    
Sbjct: 316 GVVGMISLLLETELTR----EQKEYAETVRNSAHSLLEIINDILDFSKIEAGKLDLEAID 371

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
             L + + E   ++ LRAQEK +E    IDP +   +  D   +RQ++LNL +NAVKFTA
Sbjct: 372 FDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDPVRLRQIVLNLANNAVKFTA 431

Query: 385 IGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G   + V +   +        S+ D G G+A     ++  +F Q   +      G GLG
Sbjct: 432 QGSITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRNYGGTGLG 491

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I++ +     G+  + S+  +G      
Sbjct: 492 LAISKKLAQMMKGRIGLESEEGKGSTFWFT 521


>gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 470

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 151/339 (44%), Gaps = 17/339 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----- 195
                +  +    +   +  +A        ++ +    ++S  V  I    +++      
Sbjct: 137 VLTVGVPLVINGRIEGAIFMHAPLTEMNKTIINIFILMLLSGGVALIIGFVLISYTSSKI 196

Query: 196 --ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L   +     + K N        E+D++    +    ++ E     E+    +  F+
Sbjct: 197 SQPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNIMAKE----LEQLENMRKDFV 252

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A++SHELR+PL +I G+ + I     G +  E   +Y+  + +  + +  LI++ L++++
Sbjct: 253 ANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQKETRRMSRLIDDFLEMTK 309

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E+G++ L ++   + +++R  +I  + R  EK++ +    +     V  D+  + QV+ 
Sbjct: 310 LESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIGDKDKIEQVLT 369

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NA+KF+   G +H+          +I+IKDNG GI+  +   +   F +   +   
Sbjct: 370 NLIDNAIKFSKEKGIIHI-FTEIKDDKVFITIKDNGIGISPEDQEHIWDRFYKADKS--R 426

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + G GLGL I + I+  H  +  + S++ +G      L
Sbjct: 427 GKDGAGLGLYIVKRIINAHNEEIWVESEVGKGTAFTFTL 465


>gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1123

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 156/386 (40%), Gaps = 32/386 (8%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
                 +  L   Q    +   L   +       +      +   +  L+ +AL      
Sbjct: 519 ERTAALQNTLAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKGHYRE 578

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                   P+       A    H  ++  A +  T       +   +FK  V+       
Sbjct: 579 -------LPISGLAELVARTQSHPEEVFSAEVALTKERIGQAVATAIFKKTVEQEPLACF 631

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276
              L+     A+   D            K+ F++++SHELRTPL ++LGF+ +    +E 
Sbjct: 632 GSALLIRDITAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIKEKLET 681

Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +    ++ E  K         + +  I    + L +LIN++LD++++EAG+ E     + 
Sbjct: 682 DVFPIISTEDRKLQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPLD 741

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +++           +   +++  +I+P L  +  D   + QV++NL+SNAVKFT   G
Sbjct: 742 PSELLDWATNSTAGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINLISNAVKFT-ESG 800

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   V         IS+ D G GIA  + P V   F Q    +    +G GLGLPI + 
Sbjct: 801 CVTCRVKQGHDG-VCISVIDTGIGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 859

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+ +HGG+  + S+  +G     I+P
Sbjct: 860 IIDHHGGRIWVESEPGKGSVFSFIIP 885


>gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 375

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 12/267 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             ++   C       I  L+  +    + R++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 117 MEIEGRDCMVITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++        + E   +++G +  + + L  LI +ILDLS+IEAG  E   S I + 
Sbjct: 177 FSELLAS----ASSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDIN 232

Query: 330 DIVRECIIMLQLRAQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            ++ +     ++R +E+   +++ ++  P    +  D   + QVI N ++NA+KFT   G
Sbjct: 233 QLMSDLEQQFRMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDE-G 291

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +    T+  G Y  +KD G GI + ++PT+   F +        ++G GLGL I Q+
Sbjct: 292 SITLGY-RTNEDGFYFYVKDTGSGIPKEKLPTIFDRFVKLEQ----EKKGTGLGLSICQT 346

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I++  GG+  + S++ +G      LP 
Sbjct: 347 IVSKLGGKIGVDSEVGKGSTFWFTLPR 373


>gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 854

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 132/272 (48%), Gaps = 17/272 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +      ++L +  R  AE  N AKS FLA+MSHE+RTP+N ++G +E++    +     
Sbjct: 315 VTAAREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNL----T 370

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + +   I  SG+ LL +IN+ILD S+IEA R  L      L   + E  ++LQ RA+
Sbjct: 371 EEQRLFADTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRAR 430

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
            K +++    D  L      D   +RQV+ NL+ NAVKFT   G V V V         +
Sbjct: 431 AKGLDLMIDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTET-GHVLVRVVGIEAEPGSQ 489

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +I+++D G GIA   +  +   F Q         +G GLGL I Q ++   GG   + 
Sbjct: 490 QLHITVEDTGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVD 549

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           S+  +G      L        +P    ++TQ+
Sbjct: 550 SEPGKGSCFGFRL-------ALPVAEEDATQH 574


>gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            D+  E E A+   +   K A+E   AKS FLA+MSHE+RTP+NAI+G S +I+   +   
Sbjct: 985  DITTEKENARQ-LEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQTDL--- 1040

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N    +Y+  I  S + LL +IN+ILD S+IEA + EL  +  +L D     + ++  +
Sbjct: 1041 -NRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHK 1099

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             Q+K +E+   I+P+L   +  D   + Q+++NL +NA+KFT   G + +         Q
Sbjct: 1100 TQQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDE-GEIIIKARAVEQHEQ 1158

Query: 402  YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             ++    +KD G G+   ++  +  SF Q   +      G GLGL I++++     G+  
Sbjct: 1159 QVTIEFAVKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIW 1218

Query: 458  IRSKLREGVEVIAI--LPNTRVLNFIPEDNHES 488
            + S   EG   +         V + I + + +S
Sbjct: 1219 VESSYGEGSTFLFTAKFAIAAVNSAIEKASSKS 1251


>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
 gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
          Length = 918

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +     + P    T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++Q+I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  
Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S    G      +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516


>gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 412

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL +I G++E +  + +   + E  K ++  I      +  L
Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--EDKELVKRFLKIIEEESARMTRL 239

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL ++E          + L +++     ++Q  A+E  +++  + +     V  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECED--VVVRGN 297

Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           ++ + Q++LNL+ NAVK+T     G   V V  + +     + ++D GPGI +     + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQSRIF 357

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I ++I+  HGG+  + S++ +G  +   LP  
Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPKR 411


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 170/420 (40%), Gaps = 24/420 (5%)

Query: 91   KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            ++    +  IG+    R  ++V Q          ++          L I      L  + 
Sbjct: 693  RRFGLGESLIGQAARTRRTIVVEQTPPDYITIGSSVGRAAPAALVVLPILFEDQALGVIE 752

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHL 207
            +++ + F   +  FL      + ++   I++    D  L      A         +    
Sbjct: 753  LASFNPFTAVHHAFLDQLTETIGVNVNTIVANARTDALLEESQRLAGELRARSEELQSRQ 812

Query: 208  FKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
                      + + D L  +    EV     ++ R+  EE        +  KS FLA+MS
Sbjct: 813  EDLQRSNDELEVKADLLAQQNHDIEVKNREIEQARQELEERARQLALASKYKSEFLANMS 872

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN++L  + ++     G L      EY   IH +G  LL LIN+ILDLS++EAG
Sbjct: 873  HELRTPLNSLLILAGLLARNPKGNLT-AKQVEYAHVIHSAGSDLLQLINDILDLSKVEAG 931

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
            + +L    ++L  +V +          EK + +  +I P +   +  D   + Q++ NLL
Sbjct: 932  KMDLHVEPVALAAVVDDLRATFTPVTTEKGLRLKVEIAPDVPGRLLTDRHRLAQILRNLL 991

Query: 377  SNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            SNAVKFT   GRV +T+       G   G     ++ D G GIAE  +  +  +F QG  
Sbjct: 992  SNAVKFTEQ-GRVELTITMMAPASGRPGGEHVLFAVTDTGIGIAEENLDRIFGAFQQGDG 1050

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPEDNHES 488
                   G GLGL I + +    GG+   RS    G      LP         PE   ++
Sbjct: 1051 TTSRRYGGTGLGLSICREVATLLGGEIRARSVYGSGSTFTLDLPTNPPAELTSPEPPRDA 1110


>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1287

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 24/299 (8%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +L T           + + +V++L                +    + +++AE    AKS 
Sbjct: 577 ILGTFGFESVSSKRLINEEHVQLLQILGNILGDALIRNSFERDLLQAKEQAEAATQAKSE 636

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+NAI+G S +     +    +     Y+  I  + + LL +IN+ILD 
Sbjct: 637 FLANMSHEIRTPMNAIIGISHLALRSGL----DRRQHSYLTRIDGAARSLLGIINDILDF 692

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA + EL     +L D++     +   +A+EK +++  ++DP    S+  D   + Q
Sbjct: 693 SKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQLDPDTPLSLKGDSMRLSQ 752

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------------ISIKDNGPGI 412
           V+ NL+SNA+KFT   G + V+V   +    +                   S++D+G G+
Sbjct: 753 VLTNLISNAIKFT-SHGEIVVSVSPGTSNTAHEAIPECLPAKGYNQVCLMFSVRDSGQGM 811

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + +   +  +F Q   +I     G GLGL I++ ++   GG   ++S+  EG      
Sbjct: 812 DQDQASRLFDAFFQADSSITRRFGGTGLGLSISKQLVEMMGGSIQVQSQPGEGSTFSFT 870


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1179

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 17/274 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  +      ++ AE  + AK  FLA+MSHE+RTP+N I+G +E+     M    +
Sbjct: 534 ISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEM----S 589

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S   LL +IN+ILD S+IE+G+ EL      + ++       L +RA 
Sbjct: 590 AEQREYLNMVKSSADALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAA 649

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400
           +K +E+   +D ++  +   D   +RQV+ NLL NA+KF+   G + + +     TS   
Sbjct: 650 QKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFS-EHGAITLRMKLLMQTSDGL 708

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI   ++  +  +F Q   +      G GLGL I+  ++A  GG   + 
Sbjct: 709 CVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVE 768

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           S++  G               +P   ++ ++  C
Sbjct: 769 SQVGIGSVFGFT-------TTLPVALNQPSEISC 795


>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
 gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
          Length = 929

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/340 (28%), Positives = 161/340 (47%), Gaps = 23/340 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212
             +     P+   +S    +    LDI + G L   L        +    ++ +  +   
Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    ++  + + +LE+     D  +KRA+E    KS FLA+MSHELRTPLN ++GF+ 
Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +    N + K+Y+  I  S  +LL +IN+ILD S++EAG+  L        D +
Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390
            E + +L   A EK +E+  KID  + + +  D   ++QV+ NL+ NAVKFT  G   V 
Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429

Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +         +   ++D G GI+E +   +  +F Q   +I     G GLGL I Q +
Sbjct: 430 VELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489

Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
           ++  GG+  + S+L +G             LP ++ +N  
Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLPVSQPINTT 529


>gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 590

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F+A++SHELRTPL  I  ++E +    +   ++   ++++  I+     + 
Sbjct: 359 QRLEEMRKEFVANVSHELRTPLTTIKSYAETLLDGALD--DSSVARQFLSVINDEADRMT 416

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L+LSR++       +  I +  ++   I  + +  ++K +E+   +   L  V+
Sbjct: 417 RLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPEDLPKVF 476

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD   M QV  N+LSNA+K+T  GGR+ V       +   +SI+D G GI + ++P +  
Sbjct: 477 ADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQ-VQVSIRDTGIGIPKEDLPRIFE 535

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +          G GLGL IA+ I+  H G+  + S+L +G EVI  LP 
Sbjct: 536 RFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLPA 587


>gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 628

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 9/269 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+E +  +   +++R +A     AKS FLA+MSHE+RTP+N ILG + +++  ++ PL
Sbjct: 236 RDISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLNPL 295

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +E +  I+  G  LL +IN+IL  S+IE+G+  + + + +L   V +   ++   
Sbjct: 296 ----QEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANI 351

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A EK I I  KID S+   + +D   ++Q+I NLLSNAVKF+    +V + +  T   G 
Sbjct: 352 ASEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGN 411

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S+KDNG G++E E   +   F Q    +     G GLGL I+  +    GG+  
Sbjct: 412 IVKVLFSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGKIK 471

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           + S+  EG +    L   +   F  E+  
Sbjct: 472 VESRKGEGSKFSFELEFEKGNEFQSEEQD 500


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +          S+           D + + +  +      R +AE  N AKS+FLA MSH
Sbjct: 245 WLRLRGKVAHDSHGDANRLLGSMTD-VTQRKRDEQALQVARDKAESANRAKSQFLAVMSH 303

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N ++G + ++    +    +E    Y+  I  SG+ LLN+I+E+L  S++EAG 
Sbjct: 304 EIRTPMNGVMGMAALLASTKL----DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGN 359

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            EL ++A ++ + +   + ++   A+EK +E+   ID SL   V  DE  ++QV++NLL 
Sbjct: 360 IELEQNAFNIGECLTSALQIISPMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLG 419

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---------QYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           NAVKFT   G + +     +              ++++D G GI+   I ++   F Q  
Sbjct: 420 NAVKFTHA-GEIELRAKAENHEDPTTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQED 478

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            +      G GLGL I++S++   GG   I S   EG    
Sbjct: 479 ASTTRRYGGTGLGLAISRSLLELMGGAIEIDSAPGEGSTFT 519


>gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 617

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 180/357 (50%), Gaps = 5/357 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             L +      T   +    +A  L  +  +    F +         P  +    + ++ 
Sbjct: 256 APLPISLVDPSTFRVMQANMAALALFGIDETEADGFDVREFFDEEDLPARL---DRLVLG 312

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                     +     +    +      S     +      D+    + A++   E R +
Sbjct: 313 GRAGAPVEFCLKRRDGAVIWALVSAAVVSFHGRRALLIGIQDVTVRHKEAEA-LREARDQ 371

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A   + +KS FLA+MSHELRTPLNAI+GFSE +E E  GP+ N  Y+EY  DIH SG HL
Sbjct: 372 ATAASRSKSEFLANMSHELRTPLNAIIGFSEALERELFGPVGNPRYREYAEDIHDSGVHL 431

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L+LIN+ILDLS+IEAG ++L E    L  IV     +++ RAQ+ NI I  ++     +V
Sbjct: 432 LSLINDILDLSKIEAGHFKLHEDETDLDHIVAAATRIVRHRAQQANIAIECRLPQPPLAV 491

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             DE+ ++QV++NL+SNAVKF+  G  + V    T+ +G  IS+ D G GIA  +IP  L
Sbjct: 492 LVDERALKQVLINLVSNAVKFSPDGSLILVEANVTT-QGLRISVADKGVGIAPEDIPRAL 550

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           T F Q   ++  A +G GLGLP+A+ +   H G+  I S +  G  V   LP +RV+
Sbjct: 551 TPFTQLDGSLSRAHEGTGLGLPLAKHLTELHDGKLFIESAVDVGTTVYVDLPLSRVV 607



 Score = 46.0 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 59/227 (25%), Gaps = 14/227 (6%)

Query: 29  SKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
           +    +   +        S  +   I     +  A             +   +       
Sbjct: 32  ADPALEAGYLRASWTEAHSRLKALLIAIYVFVSWAAFDLVAMGFGWPFVLLTVARFAALG 91

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
           +  L  KV  +          R   ++          ++  +       ++     S  +
Sbjct: 92  STLLALKVFRTPDN-------RSAFMICAGVTQAIVCIVAPLSLMLGGVQFAAALLSIVV 144

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL----SFFT 201
           ++      + + +       +   +     T  +  + +L I   G+L   +    +   
Sbjct: 145 ILFAFYVGVPSRLPVNLALSASLSLGFVAVTPFLTEVSLLTILEIGVLFMVVNAIGAELV 204

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
                L ++    L  Q E  + +      +  +++  +  EE   +
Sbjct: 205 RSANRLRRTGFLTLMRQQELYEQLKREVEVRQEAEQAVRATEESFQS 251


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              + ++ +       +  +     +   W    +    A  ++G     +   +     
Sbjct: 140 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199

Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           WR  +   +    L  + +  LV         L    SA   +    S L    L   V 
Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259

Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217
           +   P ++   +          +             S   +      +    +       
Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++E        D  R  AE  +  K+ FLA++SHELRTPLNAI+GFS+V+  E
Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L+ E  +EY G I +SG+HLL+++N +LD+SRI  G ++     + +  ++R C  
Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++L+A    I +     P+  ++ AD +  RQ+++NL+SNAVKFT  GGRV V V    
Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    I + D+G GI E ++P +   F Q       + +G GLGL + + +   HGG   
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 458 IRSKLREGVEVIAILPN 474
           + S   +G  V   LP 
Sbjct: 559 VESAPGKGTAVTVTLPL 575



 Score = 41.8 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112
             +  +A         P + +W  +   + A  ++ L   ++ + +      +W    L 
Sbjct: 39  FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
                G+   L  L    +       +      +++ S  A     +   V      +  
Sbjct: 99  SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 158

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231
            L   A+       I +     TA+                        + +  E E  A
Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202

Query: 232 KSLSDETRKRA 242
           +   +E R R 
Sbjct: 203 RMQDNEARDRL 213


>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
 gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
          Length = 1258

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 168/360 (46%), Gaps = 41/360 (11%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +           + +L + +  M+       + +     +  ++++    E  +   E
Sbjct: 686  ITITPPWWETTFFRISLLLLIMGFMVGGFRWRISIVENQKCQLEIQVVQRTKELSEKTEE 745

Query: 228  LEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            L  +     +        +++AE  N AKS FLASMSHELRTPLNAILGF++++   +  
Sbjct: 746  LMQSHQELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHRSSTL 805

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            P     +++ +  I+RSG +LL+LIN++LD+S+IEAG+  L E    L  ++ E   +  
Sbjct: 806  PT---EHRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLFY 862

Query: 341  LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG------------ 387
            L+A+ K +++  +    L   +  D K +RQVI+NL+SNA+KFT  GG            
Sbjct: 863  LKAESKQLQLQVERSDHLPRYIRTDGKKLRQVIINLISNALKFTQDGGVSLYADKIASNT 922

Query: 388  --RV------HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
               V       +  G               + S+ D G G+A+ E+  +  +F Q +   
Sbjct: 923  SGEVPPPSGRRLRGGKNPDGEDVNTEITTLHFSVADTGAGVAQEEMDKLFEAFSQTATGR 982

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             S  +G GLGLPI++      GG   +RS++ +G      +   +++      + + TQ 
Sbjct: 983  ASQ-EGSGLGLPISRQFTQLMGGNIQVRSEVGKGTVFEVTI-RAQIVEAADSTSEQPTQQ 1040


>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1129

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 20/304 (6%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             IT    +   + +   +  +  I      +    + +  AE+   A+  FLA++SHEL
Sbjct: 407 VAITVSPIRGMDQQVVGSSSIERDITARRRREEELSKAKDEAEQATRAQGEFLANVSHEL 466

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAILG  E+   E + PL     ++Y+     S   LL L+N+ILD SR+EAG +E
Sbjct: 467 RTPMNAILGMLELTLQENLTPLK----RDYLQTAKDSADSLLLLVNDILDFSRLEAGHFE 522

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L     SL  ++ E +  L LRA EK +E+  +ID  +   V  D   +RQ++ NL  NA
Sbjct: 523 LEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNLAGNA 582

Query: 380 VKFTAIG------------GRVHV-TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +KFT  G            G + +  +          S+ D G GIA  +   +   F Q
Sbjct: 583 IKFTEQGEVVVDVKLIEPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIFAPFAQ 642

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPED 484
              +      G GLGL I   ++    G+  + S+  EG       ILP       +  +
Sbjct: 643 ADASTTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAEPEESVQGN 702

Query: 485 NHES 488
              S
Sbjct: 703 EKAS 706


>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 1245

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  + +  E ++ AE  NL KS FLA+MSH
Sbjct: 684 WLLSRGRVVEFTTDNQPKRMVGTHKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSH 743

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +  ++ P      ++Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 744 EIRTPMNAIIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGK 799

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL   +  L  ++   + +  L+AQEK +E+      +   +   D   + QV++N+LS
Sbjct: 800 LELERVSFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 859

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +  ++  +F Q   +   
Sbjct: 860 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTR 918

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GG   ++S++  G      +
Sbjct: 919 KYGGTGLGLSISKHLVSMMGGTMQVQSEMGVGSTFSFTI 957


>gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32]
 gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
          Length = 808

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 21/359 (5%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +       E+     +    +++ ++   + +L    F +    +++L    I+   V+ 
Sbjct: 116 MVHQMGGSEFQLATLTVQSDLSMILNDFEDRVLLLLAFEAVKIFLLSLVCLTIVYRLVVK 175

Query: 187 ISLAGMLATAL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             +                 F   T   +   +  L      +  I  +       ++ +
Sbjct: 176 RLMTMSSQINHQQVEDNKPRFLTPTNSTYSDEISTLESSY--NQSIERIRQQYQELEKAK 233

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE  N  KS FLA+MSHE+RTP+N I+G S ++    M     +  KEY+  ++ S  
Sbjct: 234 DTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSL 289

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL+LIN+ILD S+IEAGR EL +  + ++ I  +     +++A++K ++    IDP + 
Sbjct: 290 TLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIP 349

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGI 412
             V  D   +RQV+ NL+ NA+KFT   G V +++                 + D+G GI
Sbjct: 350 TMVIGDGTQLRQVLNNLVGNAIKFT-EHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGI 408

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           AE +  +V   F Q   +      G GLGL I   I+   G +  + S + +G      
Sbjct: 409 AEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSIVGKGSTFYFT 467


>gi|225568760|ref|ZP_03777785.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
 gi|225162259|gb|EEG74878.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
          Length = 806

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 149/289 (51%), Gaps = 15/289 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++  +    Q E    I +    K + +E  ++AE    AKS FL+ MSH++RTP+NA
Sbjct: 373 LSRNIDEERRIQEET---IEKERRTKQILEEALEKAERTGQAKSDFLSRMSHDIRTPMNA 429

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G +E+     M   N E  KEY+  I  SG+ LL+L+NE+LD+S+IE+G +EL+E   
Sbjct: 430 IIGMTELAL---MNTGNEEKIKEYLKTIAGSGERLLSLVNEVLDVSKIESGTFELAEKEA 486

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385
            L ++V E   M ++  ++ +      ++  + + V AD   + Q+++N+L+NA K+T  
Sbjct: 487 DLCELVDEVAEMFRVTTEKMHQTFVVHVEKEIHARVLADAGRINQILVNVLANASKYTEE 546

Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG + +++               +++DNG G+    +  +   F +   +  S   G GL
Sbjct: 547 GGMLSLSLRELKKEENQVGTYQFTVEDNGIGMKPEYVEHIFEPFSRADDSRISKIAGTGL 606

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI---PEDNH 486
           G+ I +++++   G   + S+  +G + I  L  T+        P + H
Sbjct: 607 GMTIVRNLVSMMDGDIQVESEYGKGSKFIITLYLTKCDASALTKPAETH 655


>gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 179/374 (47%), Gaps = 13/374 (3%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
           +GL W L+ +V P +     +      TL + L    ++ F+          P++   + 
Sbjct: 321 LGLDW-LIAIVIPESDFMAQIYANIRTTLALCLGALGIATFLGILTSRWILQPILRLQTA 379

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLS 235
              ++   LD ++       LS        + +   +      + +  L   ++   +  
Sbjct: 380 SNSLAAGQLDQAIEVKGIHELSSLGSAFNSMARQLQESFQALEDNNAKLDQRVQQRTAEL 439

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +++AE  N AKS F+A+MSHELRTPLN ILG+++V+E     P  ++  ++ +  IH
Sbjct: 440 KVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQQQVHIIH 496

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           + G HLL +IN+ILDLS+IEAG+ +L    + L   ++      ++RA +K +E    +D
Sbjct: 497 KCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVD 556

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHV-TVGWTSGRGQYISIKDNGP 410
           P L   V  DE+ +RQV+ NLLSNA+KFT  G    +V V  V  +  R     + D G 
Sbjct: 557 PGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRFGVTDTGV 616

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA   +  +  +F Q     +   +G GLGL I++ ++   G Q  ++S + +G +   
Sbjct: 617 GIAPAHLDQLFNAFVQVGD-RQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFSF 675

Query: 471 IL--PNTRVLNFIP 482
            L  P        P
Sbjct: 676 ELEVPLATEWELSP 689


>gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 629

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 13/286 (4%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +       +      Q   + L   +    +  ++ R+ AEE N AKS FLA+MSHELR
Sbjct: 244 RVLRDARFQHAATREIQRLNEGLEQRVRERTAELEQARQSAEEANRAKSVFLANMSHELR 303

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAILGF+ +       P      +E +G + R+G+HLL+LIN++LD+++IE+GR  L
Sbjct: 304 TPLNAILGFARLAGQ---APQATPDQREQLGFVERNGEHLLSLINDVLDMAKIESGRQTL 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
            E  + L   + + +  L+ RA+ K + +  ++   L   + +D + +RQ+++NL+SNAV
Sbjct: 361 EEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEVAEDLPRHILSDGRKLRQILINLVSNAV 420

Query: 381 KFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           K+T   GRV ++    S        G  +++ D G GI   +   V   F Q        
Sbjct: 421 KYTDA-GRVVLSARRQSAEPSGGHDGLLLAVADTGRGIPVEDQDRVFEPFVQ--SGRVGT 477

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +G GLGLPI +  +   GG+  + S   EG      LP    ++ 
Sbjct: 478 TEGTGLGLPITREFVELMGGEIGLESTSGEGSRFTVSLPLVPAVDE 523


>gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 2341

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1830 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1889

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    ++   EY+  I      LL LIN
Sbjct: 1890 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1945

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + ++       V  D
Sbjct: 1946 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 2005

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    T      I    S+ D G GI E +   +
Sbjct: 2006 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2064

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +V +
Sbjct: 2065 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2124

Query: 480  FIPEDN 485
               + +
Sbjct: 2125 ASAKAS 2130


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
          Length = 906

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 161/362 (44%), Gaps = 15/362 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TLL        +   +      T L+AL +S   +  L              L T+    
Sbjct: 148 TLLRGYRSLLTSLFLVGTGLIITALLALRMSRAISLPLQRVKAAVAQLKDGHLETRLPPL 207

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                  LA  +             L +S  +      +  + I   E+     D  RK 
Sbjct: 208 GSHEMDELASGINRMAEALLSAREELQQSIDQATEDVQQNLETI---EIQNIELDLARKE 264

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E +  KS FLA+MSHE+RTPLN ILGF+++++   + P      ++Y+G I +S   L
Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGTIEKSADSL 320

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360
           L +INEILD S+IEAG+  L     +L D++ + + +L   A  K +E+       +  S
Sbjct: 321 LGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLS 380

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416
           +  D   ++QV+ NL+SNA+KFT   G + V               IS++D G G+ + +
Sbjct: 381 LVGDPLRLKQVLTNLISNAIKFTNE-GTIAVRAMVEDDNAERAQLRISVQDTGIGLTDQD 439

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
           +  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E      LP 
Sbjct: 440 LRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLSLPK 499

Query: 475 TR 476
            R
Sbjct: 500 AR 501


>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1683

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 12/257 (4%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I     A+    E ++ +++ + AKS FLA+MSHE+RTP+NAI+G S +     +G  
Sbjct: 919  RDITLDRQAEFALLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHL----ALGCE 974

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   K Y+  ++++ + LL +IN+ILD S+IEAG+ ++     SL D   +   ++ L+
Sbjct: 975  LDRKPKNYVTKVYKAAESLLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLK 1034

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-------VTVG 394
            A EKN+E+   I P +   +  D   + Q+++NL  NAVKFT  G  V        V+  
Sbjct: 1035 AGEKNLELLFDISPDVPVNLKGDPLRLNQILINLAGNAVKFTEQGQVVISVNVVTNVSTS 1094

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     S+KD+G G+ + +   +  SF Q   +      G GLGL I++ ++    G
Sbjct: 1095 HCDDINLEFSVKDSGIGMDDEQQKKLFQSFSQADSSTTRKYGGTGLGLTISKKLVELMNG 1154

Query: 455  QFLIRSKLREGVEVIAI 471
            Q  + SK  EG      
Sbjct: 1155 QIWLESKAGEGSCFSFT 1171


>gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 823

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L  ++ +A+         + +S V  L            ++      ++      E + 
Sbjct: 258 ILGVLILSAMHKLDDTVRRIVESTVGTLGSALNNAMTYKTVQQQALQLEQANMELLEADH 317

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A+MSHELRTPLN+I+GFS ++     G L   T   Y   I+R+G+HLLNLIN+
Sbjct: 318 LRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNL-VATDLSYAEKINRNGKHLLNLIND 376

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLS+IEAGR EL      +  + +E + ML+ +A E+N+ +  +    +     D + 
Sbjct: 377 ILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIPMFETDGEK 436

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +++V++NLL NA+KFT  GG V V +   SG    I + D+G GI + ++ T+   F Q 
Sbjct: 437 LKRVLINLLGNAIKFTHKGG-VKVRLISQSGHRLNIEVNDSGIGIPQDKLETIFQPFRQV 495

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             +      G GLGL I +SI+    G+  + SK  EG      LP        P    E
Sbjct: 496 DSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLPLGGDAARQPAPAVE 555

Query: 488 ST 489
             
Sbjct: 556 EP 557


>gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 15/312 (4%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             A  +    +I  A     A+    +I   +          + E  +    L       
Sbjct: 327 MLAFNAKFRDNILFAISTYLAVELLVFILLRMGTG-----QFRREVLERTVALHKNNRQL 381

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              ++ AEE N AKSRFLA+MSHE+RTP+NAI+G +++++   +    +     ++    
Sbjct: 382 ALAKREAEEANAAKSRFLATMSHEIRTPMNAIVGMADLLKDTPL----DREQARFVATFQ 437

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+G  L++L+N+ILDLS++++G+  +      +  ++ +   M+  +A+ K +++     
Sbjct: 438 RAGDQLMDLLNDILDLSKVQSGQIHIEVVETDIRTLLDDLSAMMVAKARVKQVDLLFNPH 497

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGP 410
           P+L   V  D   +RQV++NLL NA+KFT   G V +   +TS           I D G 
Sbjct: 498 PNLPARVGVDPLRLRQVMINLLGNAIKFT-ANGEVELRAYFTSSSEVPYGLGFEISDTGI 556

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E  +  +  +F Q  +++     G GLGL I++ ++A  GG   + S + +G     
Sbjct: 557 GIDETRLKAIFEAFTQADLSVTRQFGGTGLGLTISRHLVALMGGDIQVESTIGQGSRFWF 616

Query: 471 ILPNTRVLNFIP 482
            +P    +   P
Sbjct: 617 EIPIDEPVQRQP 628


>gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 470

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 156/352 (44%), Gaps = 14/352 (3%)

Query: 129 PGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVALSTQ---AIMSMHV 184
                     +     L+I      A+        +  +   + + +      A++   V
Sbjct: 128 YFGGRFNQPVLTVGVPLVIKGRIEGAIFMHAPLTEMNKTIINIFLLMLLSVGVALIIGFV 187

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L    +  ++  L   +     L K N        E+D++    +    ++ E     E+
Sbjct: 188 LISYTSSKISQPLKEMSLAVQQLAKGNFSARVQHKEEDEIGELAKSFNVMAKE----LEQ 243

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHELR+PL +I G+ + I     G +  E   +Y+  + +  + +  L
Sbjct: 244 LEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPVEKACDYLKIVQKETRRMSRL 300

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I++ L+++++E+G++ L ++   + +++R  +I  + R  EK++ +    +     V AD
Sbjct: 301 IDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIAD 360

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  + QV+ NL+ NA+KF+   G +H+    T     +I+IKDNG GI+  +   +   F
Sbjct: 361 KDKIEQVLSNLIDNAIKFSKEKGIIHI-FTETKDDKVFITIKDNGIGISPEDQEHIWDRF 419

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   +    + G GLGL I + I+  H  +  + SK+  G      LP  +
Sbjct: 420 YKADKS--RGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469


>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 611

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 145/267 (54%), Gaps = 23/267 (8%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +L  E++      +  +++AE  N AKS F+A+MSHELRTPLNAILGFS++++      
Sbjct: 112 QELEQEVKRQTEELEIAKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKR---SS 168

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  KE I  I RSG +LL LIN ILDL++IEAG+  L+     L   ++E   +L L
Sbjct: 169 TLSQEEKENINIIGRSGDYLLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHL 228

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------ 394
           +A  K +++    D  +   +  DE  +RQV++NL++NA+KFT+ GG V V V       
Sbjct: 229 KANNKGLKLEINHDQDVPQYINTDETKLRQVLINLINNAIKFTSEGG-VFVQVRNQPSDI 287

Query: 395 -----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                       T+     I+++D G GIA GE+  +  +F Q   + K + +G GLGL 
Sbjct: 288 KDSNLNNDSKSLTNNDYINITVQDTGVGIAAGELDKLFEAFAQTE-SGKKSSEGTGLGLA 346

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470
           I++  +   GG   + +++  G     
Sbjct: 347 ISRKFVQLMGGDITVTTEVESGTTFSF 373


>gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 775

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 8/269 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +    I    ++  + + + E+        +KRA++    K+ FLA+MSHELRTPLN +
Sbjct: 251 EEMQNDIDQATSDLRETMEQFEIQNVELAIAKKRAQDAARIKTEFLANMSHELRTPLNGV 310

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GF+     +T+         EY+  I RS  HLLN+IN+ILD SR+EA +  L      
Sbjct: 311 IGFT----RQTLKTPLTIQQTEYLYIIERSANHLLNIINDILDFSRLEADKLVLENVPFL 366

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L D + E +++L L A+ KNI++   +DP + + V  D   ++Q+  N++ NA+KFT  G
Sbjct: 367 LQDTIDEVMVLLTLSAKSKNIQLTHHVDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQG 426

Query: 387 G-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              + + +           I++ D G GI+  + P +  +F Q + +I     G GLGL 
Sbjct: 427 SVEIKINLLQQKHHKINLEITVSDTGIGISPEQQPHLFQAFHQANASISRHYGGTGLGLV 486

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I + ++   GG     S+ ++G      L
Sbjct: 487 ITRKLIQEMGGNISFTSEPKKGSVFRFDL 515


>gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1203

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 174/391 (44%), Gaps = 6/391 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  + V     G    ++ L     +TP  L   +S    I LSI+   N      +   
Sbjct: 386 RNIVAVPIHYEGYVRGVIELASLTAYTPNDLAFLESVMHNIGLSINTSENRRRVQELLEE 445

Query: 167 FFPVVVALSTQA--IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q   + +++    + A  L  +          L ++N ++       +D 
Sbjct: 446 TQAQSEELQVQHGELENINTELEAQAQKLQASEEELRVQQEELQQANQELEERSRLLEDR 505

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              +        +  +  E     KS FLA+MSHELRTPLN+IL  S ++       L++
Sbjct: 506 NQVIVERNLEIQKKAEELEISTKYKSEFLANMSHELRTPLNSILLLSRLMAENNEKNLSD 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E    I  SG+ LLNLI+EILDLS+IEAG+ +L  + + + +I  +   +    A+
Sbjct: 566 DQI-ESAQVIQSSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDMEALFGPIAR 624

Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           EKN+ +  + +  + + +  D+  + Q++ NLLSNA+KFTA G   + VT          
Sbjct: 625 EKNLALNVQVMSDAPALIETDKMRLEQILKNLLSNALKFTAKGAVTLQVTAVAQDPSIVR 684

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            +++D G GI   +   +  +F Q   + +    G GLGL I++ +    GG+  + S+ 
Sbjct: 685 FAVRDTGIGIPVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLGGEIRLESEP 744

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G E +  +P  R      +   E+TQ + 
Sbjct: 745 GHGSEFVVTIPL-RPQENREQPVQEATQQQA 774


>gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1022

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 158/436 (36%), Gaps = 19/436 (4%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
            S    +     +VL  A++             +  TL        L  +     +    
Sbjct: 307 RSRLAATGWTIAYVLSWADVAA--GIGVQAGALAASTLVAIVVMWLLLVRFHRRVLVPVY 364

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                  +   +        +  +        +   +  S  L   L +    +  L   
Sbjct: 365 ARSA--RVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDVLAQMLVLHGGDHHALAAQ 422

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
               +   V        M   ++  +                Y      + + +    + 
Sbjct: 423 ALAQYDAFVANGGAGRTMMTELVLDAHGDAPLHLEVIAHSARYQGEDVLIAVFADTTAQR 482

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L+ +        +E  + A+  N AKS FLA+ SHE+RTPLN ILG  E++E   +   
Sbjct: 483 RLVHQ-------LEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERTAL--- 532

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            + + +  +  +  S + LL ++++ILD S+IEAG   +      +I ++   +      
Sbjct: 533 -DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFDVIAVIERELAAFAPV 591

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400
           A+ K + +F  ID S +  +  D   + QV+ NLL NA+KFT  G  V  V VG      
Sbjct: 592 ARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTGEGRIVARVAVGHDVRGK 651

Query: 401 QYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             I+I  +D G GI   +   +   F Q   +I     G GLGL +   ++A  GG   +
Sbjct: 652 PEIAIGIEDTGIGIDPAQQNRLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISV 711

Query: 459 RSKLREGVEVIAILPN 474
            S    G      LP 
Sbjct: 712 HSAPGVGSLFTVRLPL 727


>gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 793

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 12/296 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +  +      ++     +      ELE A +   + ++ A+  + +KSRFLA++SHE+
Sbjct: 238 ANLKRNREDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEI 297

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N +LG   ++    +        +EY   I  SG+ L+ +IN++LD SRIE+G+ +
Sbjct: 298 RTPMNGVLGMVSLLLETDL----QAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLK 353

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           + +   +   ++ E   +   RA++K + +   +   +   +  D   +RQV+ NLL NA
Sbjct: 354 MEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNA 413

Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           VKFT   G + +TV     G    +S  + D G GI +  +P +   F Q   +      
Sbjct: 414 VKFTLK-GTITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFG 472

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL---NFIPEDNHEST 489
           G GLGL I + ++   GG     S+   G      +  + V       PE +HE+ 
Sbjct: 473 GTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFTVALSVVPDTGEPEPEPSHEAA 528


>gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1141

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 10/248 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                     +  AE  N AKS+FLA+MSHE+RTPLN I+G +E+  +  M       ++
Sbjct: 571 RKRAEALHREKLTAEAANRAKSQFLANMSHEIRTPLNGIIGMTELAMMRDMDS----KHR 626

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I      LL +IN+ILD S+IEA   +L E +     +V   +     RA++K +
Sbjct: 627 NILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISFDPASVVENVVKAFVHRAEQKGL 686

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYI 403
            I   ++  +   V  D   +RQ+++NL+ NAVKFT   G + +                
Sbjct: 687 GITVSMERDIPDGVIGDPGRLRQILINLVGNAVKFTQK-GEIGIEARVAEDLDKRIKLRF 745

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++KD G GI + +  T+  SF Q   +      G GLG  I++ +    GG+  + S++ 
Sbjct: 746 AVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGTGLGTTISKHLAELMGGEIGVESEVG 805

Query: 464 EGVEVIAI 471
            G      
Sbjct: 806 TGSIFWFT 813


>gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 765

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 28/347 (8%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI----- 203
           ++  A  +  LPY       P+     T   ++    +   A        +   I     
Sbjct: 275 VAREAFLSLGLPYDNLHLREPIF----TTFTLAGEKYNAMFAPFTGAEWPWVIGIYMPED 330

Query: 204 ----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
               +    ++   +++  A    LI  L VA  LS   R+ AE  + AKS+FLA MSHE
Sbjct: 331 DYLGSIKANRTVNILIALVAVVIALIIGLLVANKLSR-AREMAESADEAKSQFLARMSHE 389

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA+LG  E++   ++    N   + Y+     +G+HL  L+ ++LDLSR E+GR+
Sbjct: 390 IRTPMNAMLGAGELLAETSL----NGDQRRYVSIYQSAGEHLRELVRDVLDLSRFESGRF 445

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            L E+  SL   + +   +  L A+ K +++   +DP     +  D   +RQV++NLL N
Sbjct: 446 RLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVDPDTPDRLVGDPTALRQVLVNLLGN 505

Query: 379 AVKFTAIG----GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++KFT  G    G   V  G  +         +++D G GI   +   +   F Q   + 
Sbjct: 506 SIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQDTGIGIPVDKQEVIFERFSQADGST 565

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTR 476
                G GLGL I ++++   GG   + S+  EG        LP  +
Sbjct: 566 SRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTTLTFTVRLPLDQ 612


>gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
 gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
          Length = 906

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    + 
Sbjct: 489 ITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 544

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   +  + + LL LINEILDLS+IEAG  E + + + L  + +E    L+ R  
Sbjct: 545 EERQNYYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCP 604

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
           E  +E+  +      +V  D+  + QVI NL+ NA KFT  G    V  G    G     
Sbjct: 605 E-GVELVYEASDEEITVEGDKNRIFQVISNLIGNAFKFTTRGS---VGYGYRRKGNEIEF 660

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F +      +  QG GLGL I ++I+   GG   + S++ 
Sbjct: 661 YVSDTGIGIQTDKLAKVFERFVKV----NTFAQGTGLGLSICKTIIERLGGTISVCSEVG 716

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP  +      E+ +  ++
Sbjct: 717 KGTTFTFTLPLAKDKRETAEEQNSVSE 743


>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 714

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 10/280 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 27  AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 86

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN+ILD S++EAG
Sbjct: 87  HELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIINDILDFSKLEAG 142

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        +++ E + +    A EK +EI  KIDP +   V  D   ++QV+ NL+
Sbjct: 143 KLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLV 202

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            N++KFT   G + V+V   + R   I     ++D G GI+E +   +  +F Q   +I 
Sbjct: 203 GNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASIS 261

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I Q ++++ GG+  + S+L +G      L
Sbjct: 262 RRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 301


>gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 499

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 3/253 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    + R  AE+ + AKS F+A++SHEL+TPLN+I+GFS+++  ++ G L
Sbjct: 224 RDITERQRAEDALLKVRI-AEDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKL 282

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E    YI +I  SG+HLL  I++ILDLS+IEAG+  L         I ++   + + R
Sbjct: 283 S-ERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFEFTKIFKDIEKVFRPR 341

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K + +  ++D  + S +AD+   +Q++ NL+SNAVKFT   G + V+     G    
Sbjct: 342 VSGKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEGSITVSAAKI-GNMVR 400

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I +KD G GI+  ++ +    F Q     K   +  GLGL + +  +  HGG     S  
Sbjct: 401 ICVKDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKRFVEMHGGNIQAESVP 460

Query: 463 REGVEVIAILPNT 475
            EG   I  LP  
Sbjct: 461 GEGSSFIIELPLK 473


>gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 502

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K    + ++ AE  N AKS FLA+MSHE+RTPLN I+G +++    T+     E  KE +
Sbjct: 10  KEELFKLKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTDL----TLSTNLTEEQKENL 65

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +      LL+LIN ILDLS+IEA +  +     ++  +++  I     +A EK I++ 
Sbjct: 66  SIVKSCAHSLLSLINNILDLSKIEAEKVLIENVNFNIQVLIKNVIYTNLPKANEKYIQLH 125

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIK 406
             ID ++  V   D   + QV+ NL+SNAVKFT   G V + V       +       ++
Sbjct: 126 YTIDENIPQVLVGDVYRLEQVLNNLVSNAVKFT-ESGFVIIKVRKINKSKNEYEIQFVVE 184

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+  E+  +  SF Q   +I     G GLGL I++ ++   GG   + S+   G 
Sbjct: 185 DVGIGISRDEMQHLFKSFSQVDGSITRKYGGTGLGLSISKKLVELMGGNIEVESEKGVGS 244

Query: 467 EVIAILPNTRVLNFIPEDNHES 488
           +    +   + ++ I E +H+ 
Sbjct: 245 KFYFAIKLDKAMDDIGELDHQK 266


>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1450

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 9/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I   ++ ++     +++AEE   AKS FLA+MSHE+RTP+NAI+G + +     +   
Sbjct: 678 EDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPL--- 734

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   ++YI  +HRS + LL ++N+ILD S+IEAGR ++ +    L D++     ++ L+
Sbjct: 735 -DARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLK 793

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A++K +E+   + P + + +  D   + Q++ NL +NAVKFT  GG + + V   +    
Sbjct: 794 AEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGAD 853

Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           +      ++D G G+   +   +  SF Q  ++      G GLGL I + +    GG+  
Sbjct: 854 WVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEIG 913

Query: 458 IRSKLREGVEVIAI 471
           + S+   G      
Sbjct: 914 VESEPGAGTCFRFS 927


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 97/391 (24%), Positives = 163/391 (41%), Gaps = 34/391 (8%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              +L L       P  + + K     +A++I++        A+             + +
Sbjct: 331 LIGVLELASFRILEPPVMKLLKRLMETLAVAINSSQTHEQVRALL------------ERV 378

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              + L       L            +L  S  ++   Q E   + AEL       +  R
Sbjct: 379 QQQNELVAEQQEELRQTNDSLLRQAENLQASEEELRVQQEELRQINAELVERNEAVEIAR 438

Query: 240 -------KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  +  E  +  KS FLA+MSHELRTPLN++L  ++++       L      EY  
Sbjct: 439 QSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLT-AKQIEYAT 497

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IHRSG  LL LIN+ILDL++IEAG   +   ++ +  IVR+   +  + A+EK +++  
Sbjct: 498 IIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLIT 557

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------------WTSG 398
           K+  S+   +  D   + Q++ NLLSNA KFT   GR+ +++                  
Sbjct: 558 KLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRKEK 617

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ D G GI   +   +  +F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 618 SLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEITL 677

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            S+  +G      LP +  +   P      T
Sbjct: 678 HSEEGKGSTFTLWLPLSLSVTPQPGTTPPET 708


>gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH
            1]
          Length = 1739

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 22/287 (7%)

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             +  V      E+ +RA E + +KS FLA+MSHE+RTP+ AILG++E+++      + + 
Sbjct: 1340 TQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDT 1395

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
                ++  I R+G +LL++IN+ILDLS+IEAG+ ++         ++ +   ++++RA+E
Sbjct: 1396 EGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKE 1455

Query: 346  KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
              +E+  +    + + + +D K ++QV++NL+ NA+KFT   G V + V   S      I
Sbjct: 1456 AGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPE-GNVRLVVRMESEPIRLCI 1514

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +   F QG  ++     G GLGL I++ +    GG    +S++ 
Sbjct: 1515 DVIDTGIGITPEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVG 1574

Query: 464  EGVEVIAIL---------------PNTRVLNFIPEDNHESTQYKCYA 495
             G      +               P +++++ +   +    +  CYA
Sbjct: 1575 VGSTFTLSVFPGDLTGVAMVDHSQPVSKLVDDLENSSTTPIKLNCYA 1621


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 22/261 (8%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++ +    + ++ AE  N AKS FLASMSHE+RTP+N I+G +E+     +     
Sbjct: 436 ITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTEL----ALMQEPK 491

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  + +S   LL++IN+ILDLS+IEAGR EL  +   L D++      +++ A+
Sbjct: 492 AKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAE 551

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            K +     IDP +   +  DE  +RQ+ +NL+ NA+K+T   G+V V VG   GRG   
Sbjct: 552 RKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEA-GQVSVRVGVEDGRGAQD 610

Query: 402 ------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                         S+KD G GI + ++  +   F  G  A  +   G GLGL I + ++
Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTG--ARSAKYDGTGLGLAITKRLV 668

Query: 450 ANHGGQFLIRSKLREGVEVIA 470
              GG+  ++S+L  G     
Sbjct: 669 ELMGGRITVQSELGRGSTFSF 689


>gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 754

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 2/283 (0%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G           I Y    + + +     E+     +L    +   +  +  +  +  K 
Sbjct: 470 GSSIPVELSSRIIEYEGKTAILALARDITERKRAERKLNEYANELAKANEELKSLDKMKD 529

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL+++SHEL+TPL +I G+S +I  ET+G LN+E  K+ +  I R+ + L  L++ ++ 
Sbjct: 530 EFLSNVSHELKTPLTSIKGYSNIIYEETLGKLNDE-QKKTMNTIVRNSERLRRLVDSLIY 588

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           +S  +AG+ E S   + +  ++ + I        +K + + + +  ++  +  D+  +  
Sbjct: 589 MSMSQAGKIEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIPQINGDKAKLTD 648

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NLL NA KFT+ GG + V   +      +I + D G GI E  IP +   F Q   +
Sbjct: 649 MLTNLLDNATKFTSSGGEITVEA-FEEDEHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSS 707

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I+    G GLGL I + I+  H G   I S   +G  V   LP
Sbjct: 708 IRRKYGGTGLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
              + ++ +       +  +     +   W    +    A  ++G     +   +     
Sbjct: 140 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199

Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           WR  +   +    L  + +  LV         L    SA   +    S L    L   V 
Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259

Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217
           +   P ++   +          +             S   +      +    +       
Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++E        D  R  AE  +  K+ FLA++SHELRTPLNAI+GFS+V+  E
Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L+ E  +EY G I +SG+HLL+++N +LD+SRI  G ++     + +  ++R C  
Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++L+A    I +     P+  ++ AD +  RQ+++NL+SNAVKFT  GGRV V V    
Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    I + D+G GI E ++P +   F Q       + +G GLGL + + +   HGG   
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 458 IRSKLREGVEVIAILPN 474
           + S   +G  V   LP 
Sbjct: 559 VESAPGKGTAVTVTLPL 575



 Score = 41.8 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112
             +  +A         P + +W  +   + A  ++ L   ++ + +      +W    L 
Sbjct: 39  FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
                G+   L  L    +       +      +++ S  A     +   V      +  
Sbjct: 99  SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 158

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231
            L   A+       I +     TA+                        + +  E E  A
Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202

Query: 232 KSLSDETRKRA 242
           +   +E R R 
Sbjct: 203 RMQDNEARDRL 213


>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
          Length = 641

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 13/330 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213
           F++       F  ++  L     + +  L++    +   +         +    F   V 
Sbjct: 151 FLVIAEAIKIFLLILGVLWVTFRLMVKPLELLSGAVSDFSGGHVPSKVTLPKRWFFDEVS 210

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L  +   +  +  +   +   ++ R +AE  N  KS FLA+MSHE+RTP+N I+G + +
Sbjct: 211 LLERKY--NRSVERVSEHQLEIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    +E  K+++  I+ S   L+ +I++ILD S+IEAG+ EL  +  +L+D++ 
Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLH 324

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR---V 389
           E   +  ++AQ+K +++   IDP L   V  D   ++QV+ NLLSNAVKFT  G     V
Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMV 384

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +    T     +  + D+G GIA+    TV   F Q   +      G GLGL I  S++
Sbjct: 385 SLVSRKTDIASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICNSLV 444

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              GG+  + S+   G      +P   V +
Sbjct: 445 EVMGGEIRLTSEPGLGSYFEFTIPLNIVCD 474


>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
 gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
          Length = 641

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 15/331 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213
           F++       F  V+  L     + +  L++    +   +         +    F   V 
Sbjct: 151 FLVIAEAIKIFLLVLGVLWVTFRLMVKPLELLSGAVSDFSGGHVPSKVTLPKRWFFDEVS 210

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L  +  +              ++ R +AE  N  KS FLA+MSHE+RTP+N I+G + +
Sbjct: 211 LLERKYNRSVDRVSEHQL--EIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    +E  K+++  I+ S   L+ +I++ILD S+IEAG+ EL  +  +L+D++ 
Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLH 324

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E   +  ++AQ+K +++   IDP L   V  D   ++QV+ NLLSNAVKFT   G V + 
Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTER-GHVKLM 383

Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V   S      G +  + D+G GIA+    TV   F Q   +      G GLGL I  S+
Sbjct: 384 VSQVSREADVAGVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICSSL 443

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   GG+  + S+   G      +P   V +
Sbjct: 444 VEVMGGEIRLTSEPGLGSYFEFTIPLNIVSD 474


>gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae]
          Length = 2341

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1830 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1889

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    ++   EY+  I      LL LIN
Sbjct: 1890 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1945

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + ++       V  D
Sbjct: 1946 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 2005

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    T      I    S+ D G GI E +   +
Sbjct: 2006 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2064

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +V +
Sbjct: 2065 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2124

Query: 480  FIPEDN 485
               + +
Sbjct: 2125 ASAKAS 2130


>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 760

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 10/309 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
           H++   ++  +A   S    + +   +    +       +D   E +  +   ++ RK A
Sbjct: 174 HMIHQRMSDAIAGMASRRDRLPWFASREFRALNFSVGVLEDTFEERDEREFALEDARKAA 233

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKS FLA+MSHE+RTP+N ++G +E+I    +    ++  K Y   I +SG  LL
Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DDDQKMYAETISKSGSALL 289

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN+IL+ S+IEAG+ EL  +  +L   + + + +L  +A EKN+E+  + DP L   +
Sbjct: 290 TIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPGLPEFF 349

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIP 418
             D   +RQ++ N+  NAVKFT+  G V++ V   +  G     IS+KD G GI   ++ 
Sbjct: 350 EGDVGRIRQILTNIAGNAVKFTSA-GYVYIEVSGHTAGGYSDLRISVKDTGTGIPADQLN 408

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RV 477
           ++  +F Q   A     +G GLGL I+  ++   GG   + S L EG      LP   R 
Sbjct: 409 SIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEGSTFTVELPLKVRE 468

Query: 478 LNFIPEDNH 486
               P  + 
Sbjct: 469 HQRQPRVDE 477


>gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40]
          Length = 2326

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1815 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1874

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    ++   EY+  I      LL LIN
Sbjct: 1875 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1930

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + ++       V  D
Sbjct: 1931 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 1990

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    T      I    S+ D G GI E +   +
Sbjct: 1991 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2049

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +V +
Sbjct: 2050 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2109

Query: 480  FIPEDN 485
               + +
Sbjct: 2110 ASAKAS 2115


>gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 840

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 12/312 (3%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
               +  ++             I+  L   +++           I   + A+    + R 
Sbjct: 345 RGDAIGKTIELSALDRDGREFPISLSLSAVSLQNRWHAVGIVRDITRQKDAEEKIVKARD 404

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  N AKS FLA+MSHE+RTP+N I+G  +++E  ++         +Y+     S + 
Sbjct: 405 EAEAANRAKSEFLANMSHEIRTPINGIMGMMQLLEATSLDV----EQAQYVQMGLTSARR 460

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+++ILDLSRIEAG+ E+ +    +  +      +  +  +EKNI +   +DP L  
Sbjct: 461 LTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLPE 520

Query: 361 VW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEG 415
           +   DE  ++Q++ NL+ NA+KFT   GRV V               +++ D G G+   
Sbjct: 521 ILLGDETRLQQILFNLVGNALKFTEQ-GRVQVNWHLMKRRERDIQVLLTVSDTGIGMTPH 579

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F Q   A     QG GLGL I + ++    G+  + S    G     +LP  
Sbjct: 580 RAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLPLK 639

Query: 476 RVLNFIPEDNHE 487
             +   PE   +
Sbjct: 640 --VPEQPEKEQQ 649


>gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima]
          Length = 412

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 119/235 (50%), Gaps = 7/235 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL +I G++E +  + +   N E  K ++  I      +  L
Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL +IE          + L +++     ++Q  A+E  +++  + +     V  +
Sbjct: 240 INDLLDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECED--VVVRGN 297

Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           ++ + Q++LNL+ NAVK+T     G   V V  + +     + ++D GPGI +     + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRIF 357

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             F +   A      G GLGL I ++I+  HGG+  + S++ +G  +  +LP  R
Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPKRR 412


>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
           response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
           kinase / response regulator hybrid [Rhodopirellula
           baltica SH 1]
          Length = 871

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 27/291 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +L+ +++   E  + A+  N +KS FLA+MSHE+RTP+NA++G ++++    + P 
Sbjct: 276 RDITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKLDP- 334

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+  I  S   LL LIN+ILD S+IEA R EL     SL   +   +     +
Sbjct: 335 ---DQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFK 391

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393
           A EK +E+ + I P L   +  D   +RQV+ NL+ NA+KFT  GG              
Sbjct: 392 ASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERA 451

Query: 394 --------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D+G GI   +   VL  F Q   +      G G
Sbjct: 452 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 511

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           LGL I++ ++   GG+  ++S++  G      L        +P +  +  +
Sbjct: 512 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEE 562


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 141/271 (52%), Gaps = 2/271 (0%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + +     + +L    E   +      A+   ++  K A   + +KS FLA+MSHELRTP
Sbjct: 551 SRNWSSEEIGLLKIVGEIVAISLARHEAEVAQEKAAKAAFAASKSKSEFLANMSHELRTP 610

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L AILG SE +  E  GPL  + +++ +  I +SGQHLL LIN++LDLS+IE+G+ EL  
Sbjct: 611 LTAILGLSEALRDEVFGPLTAKQHQK-LATIEQSGQHLLELINDVLDLSKIESGKMELHL 669

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S   +  +    +  ++ +A +K I++   + P +  V  DE+ MRQ+++NLLSNAVKFT
Sbjct: 670 SNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLINLLSNAVKFT 729

Query: 384 AIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G V + V            + D G GIA   I  +   F Q   +      G GLGL
Sbjct: 730 PESGAVWIEVKGDLEHETLQFIVADTGIGIAPENIGKLFQPFVQVDSSFTRRYAGTGLGL 789

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + + ++  HGG   + S+L  G      LP
Sbjct: 790 ALVRQVIELHGGSVSLESELGSGSRFTVSLP 820


>gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4]
 gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 935

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L +    L + + E I ++   AQ K +E+   I P++   V  D 
Sbjct: 355 DILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   +     +   + D G GI + +   +  
Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205
           +A +I A +   L + V +S   ++V   T  ++     ++ L     +  ++       
Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE       E + AKS FLA+MSH
Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G 
Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  +A+EK IE+   I P+    +  D+  +RQVI+N +S
Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + +T   ++     I  S++D+G GI E +   +   F Q   +    
Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG   + S+   G      L
Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 13/267 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++  +++I  L+     +   ++ AE  + AKS F+A+MSHE+RTP+N I+G    +  
Sbjct: 706 LKSIINEMIYNLKQTTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIG----MTD 761

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            T+        +EY+  +  S   LL +IN+ILD S+IEAGR EL ++  SL + + + +
Sbjct: 762 LTLDTDLTAEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTL 821

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             +  RA +K +E+   I P ++ +   D   +RQ++ NL+ NA+KFTA  G V + V  
Sbjct: 822 KTMAWRAHQKGLELVCDIAPDVADILVGDPGRLRQIVTNLVGNAIKFTAE-GEVILAVDI 880

Query: 396 TSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              R       + ++ D G GI   ++  +  +F Q   +I     G GLGL I+  ++ 
Sbjct: 881 DERRSNNVIVIHFTVTDTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVE 940

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNT 475
             GG+    S    G +       P +
Sbjct: 941 LMGGKLRAESTPGLGSKFEFTAVFPIS 967


>gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1847

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244
            +     + ++      +   L +SNV++ +  AE ++    LE   S  +   +  EE  
Sbjct: 1385 VGFVLNMISSNMRMEGLLLELKRSNVELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1444

Query: 245  -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                  +  KS FLA+MSHELRTPLN++L  S+++     G L  E  K +   ++ SG 
Sbjct: 1445 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVK-FASTVYTSGH 1503

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             LL LINEILDLS+IEAG+  +      L  +  +     +  A+ K +    ++ P L 
Sbjct: 1504 ELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQVRMGPDLP 1563

Query: 360  -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
              +  D   + Q++ NL+SNA KFT   G V + VG  +G     +++D G GIA  +  
Sbjct: 1564 ERIHTDPTRLLQILKNLISNAFKFTER-GEVVLDVGPAAGGALAFAVRDTGIGIAADKQK 1622

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +  +F Q          G GLGL I++ I    GG   + S    G     +LP  
Sbjct: 1623 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLPAR 1679


>gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           A1501]
 gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas
           stutzeri A1501]
          Length = 914

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 173/420 (41%), Gaps = 23/420 (5%)

Query: 63  GTWFTQNPIFPMWSL-ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
           G           W       +  ++  +  +     +   E+  +    L+ +  +   +
Sbjct: 230 GFLVKWLADDGGWVAQGIYVLMFSHCLIAIQFSRHFLHTREL--FPRLDLLLRCTLLAAF 287

Query: 122 TLLT---LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
             +    +++  +W+          +  + L+ + +    + Y V+ +      A     
Sbjct: 288 GSMISGLVLDVQSWSILASITVIIVSAGLLLAGAFVWRRGVRYGVYYTL-----AWGVLL 342

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
              + V   SL   L              F+     +      + L  E   ++    E 
Sbjct: 343 ASFILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSR----EA 398

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +RA  EN AKSRFLA MSHE+RTPLN +LG  +++    +    + + + Y+  I  SG
Sbjct: 399 AERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQQFYLDTISSSG 454

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ +IN+ILD +RI +G+  L +    L  ++ E I +   +A EK + +   ++P +
Sbjct: 455 NSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGV 514

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG--QYISIKDNGPGIAE 414
              +  D   ++Q+++NLLSNA+KFT  G  V  V+   T          + D+G G+ +
Sbjct: 515 PRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFCVSDSGIGMRQ 574

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +  SF QG  +      G GLGL I++ ++    G   ++S    G      +P 
Sbjct: 575 EVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGRGSRFCFEIPL 634


>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 921

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 24/341 (7%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212
             +     P+   +S    +    LDI + G L   L        +    ++ +  +   
Sbjct: 194 RLMQDVTRPISHMVSVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHVEMQQ 253

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    ++  + + +LE+     D  +KRA+E    KS FLA+MSHELRTPLN +LGF+ 
Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVLGFTR 313

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +    N + ++Y+  I +S  +LL +IN+ILD S++EAG+  L        + +
Sbjct: 314 QMLKTRL----NPSQQDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFAESL 369

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390
            E + +L   A EK +E+  K+D  +   +  D   ++QV+ NL+ NAVKFT  G   V 
Sbjct: 370 DEVMRLLAPTAHEKGLELTLKVDDRIPPSLIGDALRIQQVLTNLIGNAVKFTERGNIDVT 429

Query: 391 VTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           V +              ++D G GI+E +   +  +F Q   +I     G GLGL I Q 
Sbjct: 430 VELKSDKDDEGIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQK 489

Query: 448 IMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
           +++  GG+  + S+L +G             LP +++++  
Sbjct: 490 LVSQMGGEVSLTSRLHQGSTFWFTVRLTKTDLPVSQLIDTS 530


>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
          Length = 1054

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-Y 205
           +  +I+  +   L +   +SF  + V      ++     ++ L        S+       
Sbjct: 286 VGQAITIANQQRLMFIAVMSFITIAVISLALRLVRKVTNNLQLVLEFLRRDSYSKESPLR 345

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE+        + AKS FLA+MSH
Sbjct: 346 ELIKGKDELSKFAQEVERLSYEREQAKVKLTQAKEDAEQAKDDAIKASKAKSSFLANMSH 405

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+   ++      T K+Y+  I  S Q LL+LIN+ILD S+IE+G 
Sbjct: 406 EIRTPLNGVIGISEVLSDTSLTA----TQKDYVDTIETSSQLLLSLINDILDFSKIESGM 461

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  +A+EK I +   I  +    +  D+  +RQVI+N +S
Sbjct: 462 LLISPHSTCVRESIYDIASIVSPKAKEKGINLKVSISRNTPYRLMIDDHRLRQVIMNFMS 521

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + VT    SG       S++D+G GI E +   +   F Q   +    
Sbjct: 522 NAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDSGIGIDEQQQKNIFEPFAQEDNSTTRQ 581

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG+  + S+   G      +
Sbjct: 582 FGGTGLGLAISTQLVELMGGKIQLESEKEHGSRFFFQI 619


>gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +++  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 380 ITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++YI  I+ + Q LL LIN++LDLS+IEAG  EL     +  +++ E I   + R  
Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++F +   +   +  D   ++Q++ N +SNA+K T   G + V    T   G  IS
Sbjct: 495 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GHIEVYYE-TDTDGIRIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   ++  +   F +      S  QG GLGL I +SI+    G   + S +  
Sbjct: 553 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 608

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 609 GSTFTVELP 617


>gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
 gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
          Length = 1296

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 7/265 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++    E +K AE  N AKS FLA+MSHE+RTPLN ++GFS+++    +  L      +
Sbjct: 647 KSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVIGFSDLLRKTNLNIL----QTD 702

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I+ S   LL +IN+ILD S+IEAG+ +L    I+ +++V   +  +  +A +KN+E
Sbjct: 703 YTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGLELVESAVSFITFQASQKNLE 762

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKD 407
           +  + DP +   + ADE  +RQ+++NLL NAVKFT   G + + V            + D
Sbjct: 763 LLIEYDPDVPIYFEADELRLRQILINLLGNAVKFT-ESGNIALKVTKLHKEDKLKFEVID 821

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+  +   +  +F Q  ++      G GLGL I+  ++     +  + S++ +G  
Sbjct: 822 TGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNKLLKMMQSRLHLESEVNKGSN 881

Query: 468 VIAILPNTRVLNFIPEDNHESTQYK 492
               +  T+    + ++  E    K
Sbjct: 882 FSFSIAVTKSAKTLEQNKIEKPLRK 906


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 159/321 (49%), Gaps = 12/321 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDIS----LAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           + + F  +++AL    ++S  ++        A    ++  +  Y+  +      ++    
Sbjct: 315 ILIGFLSILLALIVSFVLSETIISPIKKLKSAAEKISSGDYNIYVNVNSNDEIGELAKAF 374

Query: 219 AEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +  + + +   A        +E+ ++ +E +  KS  ++ +SHELRTPL +I G+ E++
Sbjct: 375 NKMAEDVRKSHEALKKHAKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELV 434

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               MG L NE  +  +     +   L  LI+ +LDLS+IE+G  +     I + D++ E
Sbjct: 435 LDGLMGEL-NENQRRCLEIAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINE 493

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  LQ   +EKNIE+   I+ +L +   D+  + QV++NL+ NA+KF+ + G + +   
Sbjct: 494 VLNSLQPLTKEKNIEVKCDIEDNL-TAKVDKDRIIQVLINLIENAIKFSPVKGVIEIHAF 552

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +I IKD GPGI + ++  +   F Q +   K    G GLGL I +SI+  HGG
Sbjct: 553 R-DKNYAHIIIKDYGPGIPKKDLERIFDKFYQVNFP-KIKRDGAGLGLAICKSIIEAHGG 610

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +  + S+L +G     +LP  
Sbjct: 611 KIWVESELGKGSAFHILLPME 631


>gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
 gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +++  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 380 ITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++YI  I+ + Q LL LIN++LDLS+IEAG  EL     +  +++ E I   + R  
Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++F +   +   +  D   ++Q++ N +SNA+K T   G + V    T   G  IS
Sbjct: 495 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GHIEVYYE-TDTDGIRIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   ++  +   F +      S  QG GLGL I +SI+    G   + S +  
Sbjct: 553 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 608

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 609 GSTFTVELP 617


>gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7]
 gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 935

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L +    L + + E I ++   AQ K +E+   I P++   V  D 
Sbjct: 355 DILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   +     +   + D G GI + +   +  
Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 166/355 (46%), Gaps = 18/355 (5%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL----S 198
             +L +  +  +    L   + +    V       +      +  +L+ +L         
Sbjct: 222 IYVLQSEGLMVMLRNRLLPILSIVLLGVFGFSFVLSFTLNAHISKALSELLKGFESIKKG 281

Query: 199 FFTYIT----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            F  +       L +   ++ +     +  +  L+ +  +  +  K A++ +  KS FLA
Sbjct: 282 SFVRVKLNSNDELGEIASELNNTMVFIEKTLDRLKNSNEMLRKVSKEAQQASKMKSEFLA 341

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAILGF+E++  +      N    +Y+  I+RSG+HLL+LIN++LDLS+I
Sbjct: 342 NMSHEMRTPMNAILGFAELLMND----ETNLEKMKYLKTIYRSGEHLLSLINDVLDLSKI 397

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EA R++L  S  S   +V+E        A  K +     I   +   V  DE  +RQV+ 
Sbjct: 398 EAARFDLIISPYSPAKLVKEITETYLPMAYSKGLHFANSITERVPEYVDGDEFRVRQVLT 457

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NL+SN +KFT  G   +V+V         I +++D G G++  EI  +   F Q    + 
Sbjct: 458 NLVSNGLKFTDKG---YVSVLLDYDGHHLIYTVQDTGSGVSREEIDKIFEPFIQADGTMS 514

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
               G GLGL I + I+   GG     SK+ EG +V   +P + V   +P+   +
Sbjct: 515 RKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKVTVRIP-SNVSKEVPKQKEK 568


>gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 13/274 (4%)

Query: 225 IAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           I E   A   ++E R      +  + AKS+FLA+M HE+RTPLNA++G S +     +  
Sbjct: 412 IIEDVTANREAEELRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTEL-- 469

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   + Y+  I  S + LLN+IN+ILD S++EAG+ EL ++ ++L +++     M Q 
Sbjct: 470 --DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQS 527

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWT 396
           +AQEK IE   ++ P L   +  D   + QV+ NL++NAVKFT   G V V +       
Sbjct: 528 KAQEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEK-GEVVVAIKPLRREE 586

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                +  ++D G GIA  ++  + T F Q   +      G GLGL I++ ++   GG+ 
Sbjct: 587 EEVVVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGEL 646

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + S    G      +P        P       +
Sbjct: 647 QVESVPGSGSSFSFTVPLALPDAVNPVAQPREQE 680


>gi|17232370|ref|NP_488918.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134015|dbj|BAB76577.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 941

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 27/375 (7%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLT---IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           +GL W ++ +V    +  +  T         L   +  +A+  +   +           +
Sbjct: 342 LGLDWLVIVVVPESDFMGQINTNNRTTILLCLWALIIATAMGVYTSRWIARPIVQLTQAS 401

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            +  +      + +S    L+T  + F  +   L  S  ++     E ++ +AE     +
Sbjct: 402 SAIASGNLDQEVRVSGLKELSTLATSFNQMAGQLRDSFAELEKTNQELENRVAE---RTA 458

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                ++ A+  N AKS FLA+MSHELRTPLN ILG++++++   +    N+   + +  
Sbjct: 459 EITAAKEVADAANRAKSEFLANMSHELRTPLNGILGYAQILQ---LDSNTNDEQMQGLNT 515

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+  G HLL LIN+ILD+++IEA + EL      L  ++     M  ++ ++K I    +
Sbjct: 516 IYECGSHLLTLINDILDIAKIEAKKLELYPQEFDLGRLLLGVCEMCHIKVEQKGISFKYQ 575

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------------- 398
            +  +    +ADEK +RQV++N+LSNA+KFT   G V   V   +               
Sbjct: 576 FNDYIPSKTFADEKRIRQVLINILSNAIKFT-DNGTVTFDVEVVACTGTKLITNTNQILP 634

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  I+D G G+ + ++  +   F Q    +    +G GLGL I+  I+   G    
Sbjct: 635 VHQLRFQIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEGTGLGLAISSQILELMGSDIK 693

Query: 458 IRSKLREGVEVIAIL 472
           + S   +G +    L
Sbjct: 694 VESVYGKGTKFWFDL 708


>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
 gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
          Length = 770

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 170/346 (49%), Gaps = 23/346 (6%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
              L++ A+S  ML     L+  P+             ++   ++  +A A +  + + +
Sbjct: 157 WTVLAVIAMSLLMLYLVYRLALNPL------------QIVHARMSNAVAGAKTAHSSLPW 204

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +  +    +       +D  AE +  +   +  R++AE  + AKS FLA+MSHE+RTP+N
Sbjct: 205 YSSREFQALNVSVGVLEDSFAERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMN 264

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G +EV+    + P      + Y   I +SG  LL +IN+IL+ S+IEAG+ EL+++ 
Sbjct: 265 GVIGMAEVLRETKLTP----DQEMYTDTIVKSGNALLTIINDILNFSKIEAGKLELTQAT 320

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384
            +L  +V + +++L  +A EK +++  + DP L   +  D   +RQ+I N++ NAVKFT+
Sbjct: 321 FNLRTVVEDVVMLLAPKAAEKWVQLTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTS 380

Query: 385 IGG-RVHVT-VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G   + VT           IS+ D G GI   ++  +  +F Q   A   + +G GLGL
Sbjct: 381 QGSVHIDVTGTSRGKEMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGL 440

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF--IPED 484
            I+  ++    G+  + S   +G        LP +       +PE 
Sbjct: 441 AISTRLLQLMKGRIHVTSSEGKGSVFTIDITLPTSDRAPVAFLPEQ 486


>gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
 gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 10/263 (3%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             L+        I  L+   +   + +  A+  + AKS FLA+MSHE+RTP+NAI+G S++
Sbjct: 1013 TLNSAVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQL 1072

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                 +    ++  + Y+  I R+ + LL +IN+ILD S+IEAG+ ++   +  L  ++ 
Sbjct: 1073 CLQTEL----DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLE 1128

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            +   M  ++A +K +E+   + P++   +  D   + QV++NL++NAVKFT   G V ++
Sbjct: 1129 DLSDMFSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQ-GEVLLS 1187

Query: 393  V----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +              S++DNG G+ E +   +  SF Q   +      G GLGL I + +
Sbjct: 1188 ISQLERVDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQL 1247

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +   GG+  + S+   G      
Sbjct: 1248 VELMGGEIGVESQFGNGSTFFFT 1270


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 10/274 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +         +++S           L +AK +    ++ A+  N AK +FLA+MSHE+RT
Sbjct: 128 LAIRRQDGTFRVVSVHMLIQAQSHLLAIAKDVIQSQKESADAANRAKGQFLANMSHEIRT 187

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G +E++    + P       EY+  I  S   L+++IN+ILD S+IEAG+ E+ 
Sbjct: 188 PMNGIIGMTELLLETELAP----QQHEYLQMIKTSADCLVSVINDILDFSKIEAGKLEIE 243

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                L + + + +  L  RA  K +E+   + P +   +  D   +RQ+++NL+ NA+K
Sbjct: 244 SIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGRLRQILVNLVGNAIK 303

Query: 382 FTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G + V V            + ++ D G GI E  +  +  +F Q          G
Sbjct: 304 FT-EHGEIVVRVDIDEISETDALLHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGG 362

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I   ++    G+  + S++  G +    
Sbjct: 363 TGLGLSICSRLVELMHGKIWVESQVHVGSQFHFT 396


>gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
          Length = 843

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 27/291 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +L+ +++   E  + A+  N +KS FLA+MSHE+RTP+NA++G ++++    + P 
Sbjct: 248 RDITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKLDP- 306

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+  I  S   LL LIN+ILD S+IEA R EL     SL   +   +     +
Sbjct: 307 ---DQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFK 363

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393
           A EK +E+ + I P L   +  D   +RQV+ NL+ NA+KFT  GG              
Sbjct: 364 ASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERA 423

Query: 394 --------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D+G GI   +   VL  F Q   +      G G
Sbjct: 424 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 483

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           LGL I++ ++   GG+  ++S++  G      L        +P +  +  +
Sbjct: 484 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEE 534


>gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri DSM 4166]
          Length = 908

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 161/362 (44%), Gaps = 15/362 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TLL        +   +      T L+AL +S   +  L              L T+    
Sbjct: 150 TLLRGYRSLLTSLFLVGTGLIITALLALRMSRAISLPLQRVKAAVAQLKDGHLETRLPPL 209

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                  LA  +             L +S  +      +  + I   E+     D  RK 
Sbjct: 210 GSHEMDELASGINRMAEALLSAREELQQSIDQATEDVQQNLETI---EIQNIELDLARKE 266

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E +  KS FLA+MSHE+RTPLN ILGF+++++   + P      ++Y+G I +S   L
Sbjct: 267 ALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGTIEKSADSL 322

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360
           L +INEILD S+IEAG+  L     +L D++ + + +L   A  K +E+       +  S
Sbjct: 323 LGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLS 382

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416
           +  D   ++QV+ NL+SNA+KFT   G + V               IS++D G G+ + +
Sbjct: 383 LVGDPLRLKQVLTNLISNAIKFTNE-GTIAVRAMVEDDNAERAQLRISVQDTGIGLTDQD 441

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
           +  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E      LP 
Sbjct: 442 LRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLSLPK 501

Query: 475 TR 476
            R
Sbjct: 502 AR 503


>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1230

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++     + P   
Sbjct: 698 ITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTP--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+     S Q LL +IN+ILD S+IEAG+ EL   A  L  ++   + +  L+AQ
Sbjct: 755 -QQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+      +   +   D   + QV++N+LSNAVKFT   G + +       R   I
Sbjct: 814 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI++ +  ++  +F Q   +      G GLGL I++ +++  GG   ++
Sbjct: 873 TLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQ 932

Query: 460 SKLREGVEVIAIL 472
           S+L  G      +
Sbjct: 933 SELGVGSTFSFTI 945


>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
 gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1156

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 147/273 (53%), Gaps = 6/273 (2%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              ++  L K     ++ +   +  I + +  +    + +++AEE   +KS FLA+MSHE+
Sbjct: 744  VSLSLSLLKDEHGNVAGRIGINQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEI 803

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPL+AILGF ++++ E +     +  KEY+  I  S + LL +I +ILD S+IE+G+ E
Sbjct: 804  RTPLSAILGFIDLLKKENI----EKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLE 859

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
            + +   S        I +   +  EK+I +   +D SL   +  D   ++Q+I NLLSNA
Sbjct: 860  IDKIDFSPKIEFETIIHLFLAKCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNA 919

Query: 380  VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            +KFT  G ++ VT+ +       +S+KD G GIA+ ++  +  SF Q   +      G G
Sbjct: 920  IKFTDQGKKITVTINY-KNGFLNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTG 978

Query: 440  LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            LGL I+  ++   GG+  ++SK+  G E    +
Sbjct: 979  LGLTISYRLVKILGGELHVKSKVGAGSEFYFSI 1011


>gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
 gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
          Length = 770

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/285 (38%), Positives = 163/285 (57%), Gaps = 9/285 (3%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAK 249
           ++        L +S  ++++  A+       LE+      E        + +AE+ N AK
Sbjct: 471 ITALKRHEERLMESEKRLMALVADLRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAK 530

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLNAI+GFSE++E    GPL ++ Y EY  DI  SG++LL++IN+IL
Sbjct: 531 SEFLANMSHELRTPLNAIIGFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDIL 590

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+SRIEAGR  L+   + L ++V + I ++ +RA EK I +    D    S+ AD++ ++
Sbjct: 591 DMSRIEAGRMHLNLQPVELDEVVTDSIRVMSVRADEKQITVAADTD-GAVSLEADKRALK 649

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+ LNLLSNA+KFT   GRV V    ++ R   + I+D+G GI +  +  +   F Q   
Sbjct: 650 QITLNLLSNAIKFTPENGRVSVRTRRSA-RAALLVIEDSGIGIPKAALAKIGKPFEQVES 708

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                 +G GLGL IA+S++  HGG   IRS    G  VI  LP 
Sbjct: 709 QFTKTHKGSGLGLAIAKSLVELHGGTMRIRSSEGVGTTVIIRLPL 753


>gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 843

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 104/278 (37%), Positives = 153/278 (55%), Gaps = 10/278 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELR 261
            +   + L+ +  ++ +       + L++  RK      RAE  N AKS FLA+MSHELR
Sbjct: 555 NQDEARRLNQEQLQNAVAGLERSQEQLAELARKYETEKVRAEGANRAKSEFLANMSHELR 614

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI GFSE++  E  GPL +E YK Y  DIH SGQHLL LIN+ILD+S+IEAG+  L
Sbjct: 615 TPLNAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNL 674

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               + + D+  + + +++ RA+   + +     P L  + AD + ++QV+LNLLSNA+K
Sbjct: 675 KFEPMHVEDVAEDAVRLVRNRAEAAGLNLRIDFPP-LPEIEADYRAIKQVLLNLLSNAIK 733

Query: 382 FTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT   G V +T             +S+ D G GIA+ ++  +   F Q         QG 
Sbjct: 734 FTPRAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKEDLARLARPFEQVESQFSKTTQGT 793

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGL + +S+++ H G   + S   EG  V   LP  +
Sbjct: 794 GLGLALTKSLISMHDGALEMTSTPGEGTTVSFALPIRQ 831


>gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
 gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
          Length = 468

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +      ELE+A     E++  AEE + AKS FLA+MSHE+RTP++AI+G + +     +
Sbjct: 5   QVQARTNELELANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNL 64

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  +E++  + +S   LL+++N ILDL++IEAGR EL     ++ D++   + ML
Sbjct: 65  ----TEEQREHLDTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKML 120

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q+ A++K++++  ++   +   +  D   ++Q ILNL+ NA+KFT  G      V     
Sbjct: 121 QVSARQKDLDMSWEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQ 180

Query: 399 RG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           R          S+KD G GI++ +   V  +F Q   +I     G GLGL I + ++A  
Sbjct: 181 RREEEAVCVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMM 240

Query: 453 GGQFLIRSKLREGVEVIA 470
           GG+  + S+  +G     
Sbjct: 241 GGRIWLESEAGKGSTFYF 258


>gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
 gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 760

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/459 (23%), Positives = 186/459 (40%), Gaps = 20/459 (4%)

Query: 37  IITLHVESLFRVSPILPLFVLLV-ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
           ++     +     P+L    ++V A +           +  L T     A     ++ ++
Sbjct: 32  LVPEQQLARREGLPLLTFVAIMVLAGLAHLTGAPIFISLALLATGLAGLALHLHARRSVH 91

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCW----------TLLTLVEPGTWTPEYLTIYKSATL 145
             + + +    R    +  +A  + W           L+  +       +       A  
Sbjct: 92  RTVVLLDETTARSRAEIETLADRM-WEMQESEERFRGLIDALGDLVIHRDRDGYIVYANK 150

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           + A  +       L           V  +   A      L  +   +       +     
Sbjct: 151 VFADLVET-DQRDLAGKTLAELGIEVGIVPDAAFSDHECLSSTDVAIRTPGGPRWFSWIE 209

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              +      +        I   + A+S     R+RAE  + AKSRFLA++SHE+RTP+N
Sbjct: 210 LSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMN 269

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+G + ++   ++ P      + Y+G I  S   LL LI ++LD S+IEAGR++     
Sbjct: 270 GIMGMARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQP 325

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           +S+ +I    I +L  RA  K+I +   ++P +   + AD   +RQV+LNL+ NA+KFT 
Sbjct: 326 MSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFTD 385

Query: 385 IGGR-VHV-TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            GG  V +      +      +I D GPG+ E ++  +   F Q       A  G GLGL
Sbjct: 386 GGGVLVSIARARSETSDRICFTITDTGPGLREEDMERIFEEFEQADGTSTRAHGGAGLGL 445

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I++ ++A  GG   + S+L +G E +  +P T      
Sbjct: 446 AISKRLVAAMGGTISVSSRLGQGSEFVFEIPATEATEAP 484


>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1434

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 10/258 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               +  ++  +  R+ AE  + AKS FLASMSHELRTPLN ++G +E++    +    +
Sbjct: 692 ATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTELLANTDL----D 747

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +++     SG+ LL LIN++LD S+IEAGR EL E    L+ ++ + + ++ LR  
Sbjct: 748 ARQTQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVS 807

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
            K+I++  ++D P    +  D   +RQV++NL+ NA+KFT   G++ + V          
Sbjct: 808 GKDIQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTER-GKISLRVEPLELTEDRA 866

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G GI    +  +  +F Q   +I     G GLGL I +S++   GG+  + 
Sbjct: 867 KLRFAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVD 926

Query: 460 SKLREGVEVIAILPNTRV 477
           S    G E    L  TRV
Sbjct: 927 SIQGVGSEFYFTLELTRV 944


>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
 gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
          Length = 906

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 13/279 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             ++E     +     ++ AE   +AKS FLA+MSHE+RTP+NA++G + ++    +   
Sbjct: 376 RDVSERVRGTAELVRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLMLDTDLTR- 434

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y   I  SG  LL LIN ILD S+IE+G  EL +   SL   + E   +L  +
Sbjct: 435 ---EQRQYAETIRTSGDMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVNELLGPK 491

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A EK I +   +   +   +  D   +RQ+++NL+SNA+KFT + G V V          
Sbjct: 492 AAEKGIVLTGMVSGQVPAMISGDSTRVRQILVNLISNAIKFTNV-GEVTVRASARPDEAL 550

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   I++ D G GI E  +  +   F Q   +      G GLGL I++ +    GG
Sbjct: 551 SGEHLIITITVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRLSELMGG 610

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
              ++SK+  G         + V   +      +   + 
Sbjct: 611 SITVQSKVGVGSSFRVTFRTSAVDPHLSPTTSNTRAERT 649


>gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus]
          Length = 1364

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 16/265 (6%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++ L++E    A+E +  KS+FLA+MSHE+RTP+  ++G SE++         NE  KE 
Sbjct: 720 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMDLNEEQKEC 773

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
             +IHRS   LL +IN+ILD S++E+GR ++ E   SL  ++R+   M+   A  K +E 
Sbjct: 774 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEY 833

Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYIS 404
              I   +     V  D   +RQ++ N+L+N++KFT++G     V ++           S
Sbjct: 834 QSLIQDEVQSDLRVIGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFS 893

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI E     +   F Q   +      G GLGL I+++++    GQ  + SKL +
Sbjct: 894 IVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 953

Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489
           G      +P TR     P  + ES 
Sbjct: 954 GTTATFWIPFTR----APSQDGESP 974


>gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 981

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 30/280 (10%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   ++          ++ E  +  KS FLA+MSHE RTPLN+I+GFS+++     GPL
Sbjct: 693 HLEQTVQEKTRTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSDILRDPAFGPL 752

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E    +  +I  SGQHLL+LIN++LDLS++EAG+ +L        + +R  +  +Q +
Sbjct: 753 T-EKQARFAQNIQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAIRAALAEVQPQ 811

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
           A  K +E+  + D + S++ AD    +Q++LNLLSNAVKFT  GGR+ VTV   + +   
Sbjct: 812 ADLKQLELTPQTDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVTVRRAARQEEG 871

Query: 401 --------------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
                                       I++ D G GI   ++P +   F +   AI   
Sbjct: 872 DTSQGAAGQGLEILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEFTRLDAAIAKR 931

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            +G GLGL + + ++  HGG+    S     G      LP
Sbjct: 932 TKGTGLGLALTKRLVELHGGEIAAVSDGEGRGSTFTVRLP 971


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       + +               I   + +++     ++ AEE + AKS FLA+MSH
Sbjct: 514 WVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEAAEEASRAKSDFLANMSH 573

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N ILG + +     +    +E  +EY+  +  S Q LL +IN+ILD S+IEAG+
Sbjct: 574 EIRTPMNGILGMTRL----CLATELSEEQREYLDMVDSSAQLLLTVINDILDFSKIEAGK 629

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            ELS +  SL ++VR+ +  L L+A EK +EI   I PSL+    AD   +RQV+ NLL 
Sbjct: 630 LELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHADATRLRQVLGNLLG 689

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT + G V + V   +      S++D G GI+   +  V  SF Q   +I     G
Sbjct: 690 NAVKFTEV-GEVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSISRRYGG 748

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            GLGL I+  ++   GG   + S+   G      +P     + +P+ N+
Sbjct: 749 TGLGLTISSRLVGMMGGTLQVESEAGLGSCFHFAVPL-PPGDILPDQNN 796


>gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 572

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/336 (28%), Positives = 149/336 (44%), Gaps = 19/336 (5%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
               A+  S   +V  L+  A  +  VL +S                 HL   +   +  
Sbjct: 213 YWRQALMQSEPVIVDQLALDAFQAKSVLVVSTFYQNERNGLICLQQCKHLRPWSAAEIEF 272

Query: 218 QAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
             E  D +             ++    AEE +  KS FLAS +HELRTPLN I+GF  +I
Sbjct: 273 VQELADQVGTAIAHATLYQELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLI 332

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                   + E  +E++ + H S  HLLNLIN+ILDL++IEAG+  L+ S + L ++   
Sbjct: 333 LDGM--ADDPEEQREFLEEAHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEA 390

Query: 335 CIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                  +AQ+KN+    K   +     ++ + + + QV+LNL+ NA+KFT  GG + V+
Sbjct: 391 VNNFTCPQAQQKNLSFKLKKPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGG-IVVS 449

Query: 393 VGWTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                 +             IS+ D G G++  +   +   F Q   +   A  G GLGL
Sbjct: 450 AEVVKKKIFCHDQEFPAIAKISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGL 509

Query: 443 PIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477
            I+Q ++   GGQ    S     G  V   +P  +V
Sbjct: 510 AISQKLVQAMGGQIDFYSMGEGLGSTVTFTVPLCQV 545


>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
 gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
          Length = 553

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 136/274 (49%), Gaps = 9/274 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              + L  + +  L    +        +       E+   A   N AKS+FLA MSHE+R
Sbjct: 143 ITAHKLRMALLNALRSYRDIRRAADLQKQIMLAEQESMTAA-AANEAKSQFLAHMSHEIR 201

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG ++++    +    NE   E+I  I  SG+ LL +IN+ILD S+IEAG+ EL
Sbjct: 202 TPLNGILGLTDILAQTQL----NENQLEFIKTIRHSGEALLAIINDILDFSKIEAGKLEL 257

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                SL  +  +   +   + Q+K ++    +DP++   +  D   ++QV+LNL+SN++
Sbjct: 258 ESIDFSLPTLCDDLEGLFISQVQDKGLQFDINLDPNIPEFLNGDPLRIKQVLLNLISNSL 317

Query: 381 KFTAIGGRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           KFT   G V + +  +      +   + D+G GI+E +   +   F Q   +      G 
Sbjct: 318 KFTHE-GYVKLDIRQSQATPLVLEFKVSDSGIGISEEKQDQLFKPFTQVDSSTTRKYGGT 376

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL I+Q ++   GG   + S++ +G   I  L
Sbjct: 377 GLGLQISQRLVQLMGGNIRLHSQVDKGSTFIFDL 410


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 144/296 (48%), Gaps = 11/296 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----KRAEEEN---LAKS 250
           +     +  L  S  ++   Q E      ELE    L +E      K+AEE       KS
Sbjct: 470 AELEAQSQKLQASEEELRVQQEELQQTNGELEERSGLLEEKNLEILKKAEELELTTRYKS 529

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+IL  S ++       L +E   EY   I  SG  LL LI+EILD
Sbjct: 530 EFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQI-EYATVIQSSGNGLLGLIDEILD 588

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
           LS+IEAG+ EL    +S+ +I  +   +    A+EK ++    I   +  V   D+  M 
Sbjct: 589 LSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKGLDFSVAIGNGVPPVIETDKMRME 648

Query: 370 QVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           Q++ NL+SNA+KFT+ G   + V +   + R     ++D G G+A  +   +  +F Q  
Sbjct: 649 QILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVVRDTGIGVAPEKQQHIFEAFQQAD 708

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483
            + K    G GLGL I++ +    GG+  + S + EG E    +P     +   PE
Sbjct: 709 GSTKRKYGGTGLGLSISRELAKLLGGEISLTSVVNEGSEFTLFVPIKPTYVAAEPE 764


>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
 gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 926

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +A +          ++ H  +    I    +E  + + ++EV     D T+K+A++  L 
Sbjct: 231 IASLQLGINEMAVAMSKHHEEMQDSIDLATSELRETLDQMEVQNIELDITKKKAQQAALV 290

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLN ++GF+  +    +         +Y+  I RS  +LL +IN+I
Sbjct: 291 KSEFLANMSHELRTPLNGVIGFARQLLKTQLTT----NQIDYLQTIERSAGNLLKIINDI 346

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S++EAG++ L      L D + E + +L   A EKN+E+   +DP +   V+ D   
Sbjct: 347 LDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLIVDPEVPYEVFGDAMR 406

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTV 420
           ++Q++ NL+ NA+KFT   G + + +     +          I I D+G GI++ +   +
Sbjct: 407 LQQILTNLIGNAIKFTEK-GDIKIQIQRIEEQTNRDNKVTLKIMISDSGIGISKKQQAQL 465

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +FGQ   +I     G GLGL I Q ++    G+  + S   +G      +
Sbjct: 466 FKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGSTFGFTI 517


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 10/246 (4%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +  +++AE  +  K+ FLA+MSHE+RTP+N ++G + ++    +        ++Y G 
Sbjct: 769  ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTT----EQRDYAGT 824

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            + RSG+ LL LIN+ILD S++EAG+  +  SA  L   + E   ML  + + + +++  +
Sbjct: 825  VRRSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQ 884

Query: 354  IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDN 408
                       D   +RQV+ NL+ NA+KFT   G + + V   S         ++I D 
Sbjct: 885  YPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGE-GSIVIEVVCESQDEARAVMRVAIHDT 943

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            GPGI   +I ++   F Q   +      G GLGL I++ +++  GG   + S+L EG   
Sbjct: 944  GPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGSTF 1003

Query: 469  IAILPN 474
               LP 
Sbjct: 1004 SFTLPL 1009


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 134/275 (48%), Gaps = 10/275 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +    + ++ AEE N AKS FLA+MSHE+RTPLNA+LG +E +        
Sbjct: 344 RDITRFKRLEDRLRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLS----FIT 399

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EY+  I  S   LL +I++ILDLS+IEAG+ ++ E    L  ++ + +   + +
Sbjct: 400 EPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQ 459

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           AQEK +E+   +  ++   + AD     QV+ NL+SNA+KFT   G V ++V   +    
Sbjct: 460 AQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEE-GSVEISVTNDNRDSR 518

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G  + + D G GI       +  SF Q   +   +  G GLGL I++ ++   GG+  
Sbjct: 519 DMGLLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEMLGGRIW 578

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + S   +G      LP   V          S+  +
Sbjct: 579 VESMPGKGSSFSFTLPIASVSKPAQPAPPTSSPVR 613


>gi|28900955|ref|NP_800610.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260366168|ref|ZP_05778628.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
 gi|260879810|ref|ZP_05892165.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894484|ref|ZP_05902980.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28809401|dbj|BAC62443.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086387|gb|EFO36082.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308092066|gb|EFO41761.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114882|gb|EFO52422.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
          Length = 785

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 134/271 (49%), Gaps = 7/271 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+   S  +    +AE    AKS FLA+MSHELRTP+N +LG S++I  ET  P+  
Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE+I  I  SGQHL+ ++N+ILD S++E  + EL ++   L  ++      +Q    
Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQPLID 361

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQY 402
           EK+I++  + D P+ +    D   +RQ++ NL  NAVKFT   G V +     +  +   
Sbjct: 362 EKSIDLIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNSEDKHLL 420

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA  +   V  SF Q   +      G GLGL I + +    GG   ++S  
Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G + I  LP     +  P   H   Q + 
Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511


>gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   L + + ++ +   E   L  EL   +      R+ AE+ N AKS FLA+MSHE
Sbjct: 370 MRGVNQELQEQSEELQAQSEELRALNEELLSQRQQEQAAREDAEKANQAKSVFLATMSHE 429

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N +LG + ++E  T+        +EY+  I  SG+ LL++I+++LD S+IE+G+ 
Sbjct: 430 IRTPMNGVLGMASLLEETTLNN----EQREYVSTIKNSGETLLSVISDVLDFSKIESGKL 485

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           +L     +L   + E + +   +     +++  +I   +   + AD   ++QV++NL+ N
Sbjct: 486 DLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHIIADSLRLKQVLINLVGN 545

Query: 379 AVKFTAIGGRVHVTV---GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+KFT+  G V + V     T          +KD G GI   ++P +  +F Q   +   
Sbjct: 546 AIKFTSK-GEVFLGVSLLSRTDDHSLELAFEVKDTGIGIPRDKLPRLFKAFSQIDSSTTR 604

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              G GLGL I + ++    GQ  + S+L  G      +       
Sbjct: 605 RYGGSGLGLAICERLVHLMEGQITVESQLDLGTTFRFSIKAEESQQ 650


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1320

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 10/260 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + +       +E+     D    +AE    AKS+FLA+MSHE+RTP+N ++G + ++  
Sbjct: 632 AEQQLQQYTRRMEIQNQELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLD 691

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P      +     +  SG++LL LIN+ILD S+IEAG+ EL      L  ++ E +
Sbjct: 692 TDLDP----EQRRLAEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVL 747

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            M+   A EK++E+  +I P + + V  D + +RQVI+NL+ NA+KFT   G V + +  
Sbjct: 748 EMMAFNAHEKDLELTYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTER-GEVGLQLAL 806

Query: 396 TSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        + D+G GI E ++  + T+F Q   +      G GLGL IA+ +   
Sbjct: 807 ERAEAGRALIRFEVHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQL 866

Query: 452 HGGQFLIRSKLREGVEVIAI 471
             G   + S+  +G      
Sbjct: 867 MNGDIGLESRPGQGSRFWFT 886


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1319

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                +  L   +        +  +RAE  N AKS FLA+MSHE+RTP+NAILG + +++
Sbjct: 679 ELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLK 738

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +T     + T  + +  I  + QHLL +I +ILDLS+I+AG+  L +   SL  ++   
Sbjct: 739 RDT----PDHTQHDRLEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNV 794

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
             ++  +A+ K + I   I  S + V  D   +RQ +LN  +NA+KFT  G   + V V 
Sbjct: 795 SALMSEQARAKGLTIIVDIGDSPAWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVE 854

Query: 395 W--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              ++G      ++D G GI+  +   +  +F Q   +      G GLGL I   +    
Sbjct: 855 RPLSNGYLLRFEVEDTGIGISPEQREKLFQAFEQADASTTRKYGGTGLGLAITSRLATLM 914

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GG+  + S   +G      
Sbjct: 915 GGEVGVESTQGKGSCFWFT 933


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 10/265 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I  ++ A++     ++ AEE +  K+ FLA+MSHE+RTP+NA++G + +     + P
Sbjct: 500 LADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTP 559

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 +EY+  I  SGQHLL +IN+ILD S+IEAG+  +      L  ++     ++  
Sbjct: 560 ----RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399
           +A  K +E+   ID +L      D   + Q+++N  +NAVKFT  G   + V +     +
Sbjct: 616 KATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQ 675

Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               Y+++KD G GI    I  +  SF Q   +      G GLGL I + I    GG+  
Sbjct: 676 DVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVG 735

Query: 458 IRSKLREGVEVI--AILPNTRVLNF 480
           + S+  +G        L  + V+  
Sbjct: 736 VESEYGQGSTFWAKVCLQKSNVIPH 760


>gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1164

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   ++ ++     R++AE  ++AKS FLA+MSHE+RTPLN ++GF++++    +    N
Sbjct: 632 ITHRKILENDLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRTDL----N 687

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +H S   LL+LIN+ILD S+IE+G+ EL +  +++ D++ +   +++ +A 
Sbjct: 688 QVQRKYMETVHLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKHKAY 747

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
           EK +E+   I P +   V+ D   +RQ++LNL+ NA+KFT   G + + +  T       
Sbjct: 748 EKGLELILNISPKVPRNVFVDSLRLRQILLNLIGNALKFTLK-GEIQIKLTATPVNQNEF 806

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI +     +   F Q   +      G GLGL I+  ++     +  + 
Sbjct: 807 EFLFEVIDTGIGINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLLQLFDSKIELE 866

Query: 460 SKLREGVEVIAIL 472
           S+L  G       
Sbjct: 867 SELNHGSRFYFKF 879


>gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 642

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 99/259 (38%), Positives = 158/259 (61%), Gaps = 5/259 (1%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A +++DE    A+  N +K+RFLA++SHELRTPLNAILGFS+++  E  G  N+E  +E
Sbjct: 357 RASTMADE----ADMANASKTRFLAAVSHELRTPLNAILGFSDILAREMFGKFNDERQRE 412

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  IH+SG+HLL L+N +LD+S+IE+GRYE+      L ++V  C  ML+L+A+++ + 
Sbjct: 413 YVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAMLRLQAEQRGVV 472

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           + +++ P L  V AD + ++Q+++NL+ NA+KFT  GG ++V  G        +S+ D G
Sbjct: 473 MTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGI-HEGLLVLSVSDTG 531

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E ++  +   F Q    +    +G GLGL + + ++  HGGQF I S+  EG  V 
Sbjct: 532 IGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIASQEGEGTVVT 591

Query: 470 AILPNTRVLNFIPEDNHES 488
             LP        P+   ++
Sbjct: 592 IRLPVNGSGANAPKSQTDA 610


>gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 498

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 3/273 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L +        +A+     AEL            + E+ + AKS+FLA+MSHE RTP
Sbjct: 224 ARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTP 283

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILG++ ++     G +   T K  +  I  +G+HLL +INEILD++RIEAGR  L+ 
Sbjct: 284 LNAILGYTNMLLQGVSGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNL 342

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S  +L ++++E +  L        + +   + P L  V +D + ++Q++LNLLSNA+KFT
Sbjct: 343 SDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFT 402

Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G + V   +        IS+KD G GIA+     +   F Q   +   A  G GLGL
Sbjct: 403 HE-GSIQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGL 461

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + +    GG+  ++S L +G      LP  
Sbjct: 462 SICRRLATMLGGRITVQSALGQGSTFTLHLPRR 494


>gi|226324999|ref|ZP_03800517.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
 gi|225206347|gb|EEG88701.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
          Length = 809

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 15/291 (5%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +  I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 576 AIVGLTAIAGANV---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + +    E        I+     +V  D   ++QV LNL+SNA+K+T 
Sbjct: 633 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFLNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDQRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           LG+ I+++I+    G   + S L +G ++   +     L    ++  + + 
Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTIYLE--LQEQEKEQDKKSD 801


>gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 763

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   ++++ +     Q +K      +        +T   A+  N +KS FL++MSHELR
Sbjct: 340 HLAVAIYQAQLYA-QVQEQKKTFEQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELR 398

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPL  I+G S  +         L  +  ++Y+  I  SG+HLL +INEIL+ S++EAG+Y
Sbjct: 399 TPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKY 458

Query: 320 ELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            LS    SL    +     L+  A  ++ N+++  +I+P  +  +AD + ++Q++ +LL+
Sbjct: 459 VLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLN 518

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG V + + W  G      ++D G GIA+ +IP +  SF Q   + +    G
Sbjct: 519 NALKFTPEGGTVILRI-WREGNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGG 577

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + ++  HGG   + S L+EG      LP
Sbjct: 578 TGLGLALTKQLVELHGGTIEVESVLQEGSIFTVRLP 613


>gi|71908362|ref|YP_285949.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71847983|gb|AAZ47479.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 455

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 201/443 (45%), Gaps = 25/443 (5%)

Query: 49  SPILPLFVLLVANIGTWFTQ--NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI--GEVY 104
             I+ + +        +       +  +W L  + +    L+L +K   S ++     + 
Sbjct: 24  GQIVTIMIASSLCWVGYQEGVVPYLVGLWGLAAIGMALLRLALARKYAQSPVEERAENIL 83

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            W   + +G +  GL W++ T++               A   I+     +      +A  
Sbjct: 84  AWHRKIRLGALGSGLIWSVGTMLMMSGGNLPMQLFTAFAMAGISAGALPVLGAD-RWAYR 142

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L  +P+++ +      +   +  + + +   AL  FT       +   +    + EK  L
Sbjct: 143 LFAWPIILTVIFSVFAT-DHMHAAFSALATLALIIFTRSADAFHRMLNETFELEREKTRL 201

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++ +       D+ R+ AE+ +LAK++FLA++SHELRTP+N ILG SE++  + + P   
Sbjct: 202 LSTV-------DQARQTAEKSDLAKTQFLANVSHELRTPMNGILGLSELLSSDPLTP--- 251

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +  +  +   L+  I+ +++LS +EAG   +  +  ++ D++   +      A 
Sbjct: 252 -DQAELLSLLRDTADGLMRQIDLLIELSALEAGHVVIKPAPFAVADLLEGLVSSQLRSAN 310

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK +++ ++ DP L  V   D + +R++  +L+ NA+KFT   G + +T      + Q+ 
Sbjct: 311 EKGLKLEKQADPDLPLVLIGDLERLREIFDHLVGNAIKFT-EHGTISITAKLLEKQNQHA 369

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               SI+D GPGI+E ++  +   F  G  ++     G+G+GLPI++ ++   GG+  I 
Sbjct: 370 RIAFSIRDTGPGISEEKLQVIKGLFAPGDSSLIRRHSGIGIGLPISRKLVELMGGEISIA 429

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           S++  G      LP    L   P
Sbjct: 430 SEVGVGSNFCFTLPFA--LEAAP 450


>gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 586

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TP+ A+ GF+E +     G  + ET + ++  I+  G  L  L
Sbjct: 350 LERMRSEFVANVSHELKTPIAAVKGFAETLLAG--GVKDEETTRSFLQIIYDEGDRLNRL 407

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I ++L+LS+IE+ R  L  + + L ++      +L   A++K+I +   +   L  + AD
Sbjct: 408 IGDLLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVPEHL-FIEAD 466

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
           E  +RQ+ +NLLSNA+ ++  GG+V V+       G      I + D G GI + ++P +
Sbjct: 467 EDRLRQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDLPRI 526

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A   +  G GLGL I + ++  H G   + SK+ EG   I  LP 
Sbjct: 527 FERFYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELPL 580


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244
            +     + ++      +   L +SN ++ +  AE ++    LE   S  +   +  EE  
Sbjct: 1381 VGFVLNMISSNMRMEGLLLELKRSNAELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1440

Query: 245  -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                  +  KS FLA+MSHELRTPLN++L  S+++     G L  E  K +   ++ SG 
Sbjct: 1441 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVK-FASTVYTSGH 1499

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             LL LINEILDLS+IEAG+  +      L  +  +     +  A+ K +    ++ P L 
Sbjct: 1500 ELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMGPDLP 1559

Query: 360  -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
              +  D   + Q++ NL+SNA KFT   G V + VG  +G     +++D G GI   +  
Sbjct: 1560 ERIHTDPTRLLQILKNLISNAFKFTER-GEVVLDVGPAAGGALAFAVRDTGIGIPADKQK 1618

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +  +F Q          G GLGL I++ I    GG   ++S    G     +LP  
Sbjct: 1619 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGRGSVFTLVLPAR 1675


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           AL    +   H  ++        A      +         +IL  +        E  V  
Sbjct: 143 ALGRDHLEVTHHFELDERLARVLATGRPEALEIRRAHPQEQILEARLALAPSGGERGVLV 202

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            L D TR R  +    ++ F+A+++HELRTPL +I GF+E +    +     ET + ++ 
Sbjct: 203 MLRDITRSR--QLEQMRTEFVANVTHELRTPLTSIQGFAETLLEGALDE--PETARHFVE 258

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            + R  +HL  LI+E+LDLSR+E+G++ +        +++         +A+   +++  
Sbjct: 259 IMLRESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVT 318

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           +    L  +  D   + QV+ NL+ NA+K+T  GGR+ ++     G G  I++ D G GI
Sbjct: 319 EAPDGLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLSARR-DGDGVRIAVADTGAGI 377

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + ++  +   F +   A   A  G GLGL IA+ I+  HGG   + S++ +G     IL
Sbjct: 378 PQADLGRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVIL 437

Query: 473 PN 474
           P 
Sbjct: 438 PA 439


>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 33/312 (10%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                     +        L     + +    +  +I   + +   ++           E
Sbjct: 582 RFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMM-----------E 630

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            + RAE  ++AKS+FLA++SHE+RTP+N +LG  +++    +    +   ++Y    H S
Sbjct: 631 LKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGL----DANQQDYAETAHAS 686

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L++LINE+LD ++IE+GR EL      L   +   + +   ++ EK IE+   I   
Sbjct: 687 GKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQ 746

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------- 400
           +   V  D    RQ+I NL+ N++KFT   G + V+V                       
Sbjct: 747 VPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEETSII 806

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GI       +   F Q   +      G G+GL I++ ++   GG+    
Sbjct: 807 KLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFE 866

Query: 460 SKLREGVEVIAI 471
           S+   G      
Sbjct: 867 SEPGTGSTFSFT 878


>gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 917

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 27/344 (7%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI-------TYHLFKSNVKILSCQA 219
              + + + T   ++  +L +  A        F   +       T  L ++  ++ S   
Sbjct: 354 IVAIFLGVYTSRWIAEPILQLIKASEAIANGEFTHRVDIKKIKETEQLSQTFNQMSSQLQ 413

Query: 220 EK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           E  + L   +E   +   + ++ AE  N AKS+FLA MSHELRTPLNAILGF++++  + 
Sbjct: 414 ELFETLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQI 473

Query: 279 --MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 N   +++++  I RSG+HLL LIN++LD+S+IEAG+  L+ +   L  ++    
Sbjct: 474 SLENNHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLE 533

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            M  +RA  + +++     P+L   + +DE+ +RQV++NL+ NAVKFT   G V +    
Sbjct: 534 EMFSIRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFT-ENGSVTLHSQV 592

Query: 396 TSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                Q             +++D GPGIA  +I  +   F Q     K   QG GLGLPI
Sbjct: 593 IDPPNQIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPI 651

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +Q  +   GG   + S L  G      +   RV    PE+   S
Sbjct: 652 SQQFVQLMGGDISVSSTLGVGSVFKFKI---RVSLGYPEEIASS 692


>gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
 gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
          Length = 929

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 146/280 (52%), Gaps = 10/280 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 239 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 299 HELRTPLNGVIGFTRQMLKTKLTN----SQTDYLNTIEKSATNLLNIINDILDFSKLEAG 354

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        + + E + +    A EK +E+  KIDP + + +  D   ++QV+ NL+
Sbjct: 355 KLALESIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDSLRIQQVLTNLV 414

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            N++KFT   G + ++V   S +   +     ++D G GI+E +   +  +F Q   +I 
Sbjct: 415 GNSIKFT-EHGNIDISVEMRSQKEDVVELQFMVRDTGIGISERQQAQLFQAFSQADASIS 473

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 474 RRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 8/259 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           ++ + E +  +    E +  AEE + AKS FLA+MSHE+RTP+N ILG +E+     +  
Sbjct: 549 EEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTPMNGILGMTELALQTELST 608

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
               T + Y+   H S + LL +IN++LD S++EAG   L +++   ++ V   +  +  
Sbjct: 609 ----TQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIAY 664

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397
            A  K IE+   ID  LS  +  D   ++Q++ NLL NAVKFT  G     V V     S
Sbjct: 665 SAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDVEVQGESDS 724

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  + D G GI   +I ++  SF Q   + +    G GLGL I + ++    G+  
Sbjct: 725 EAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIW 784

Query: 458 IRSKLREGVEVIAILPNTR 476
           + S + EG     ++P  +
Sbjct: 785 VESHMGEGSTFHFVIPFRK 803


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 8/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++L+ A+      +  AE+ N+AK  FLA+MSHE+RTP+N ++G ++++     G   +
Sbjct: 121 ISDLKRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLL----DGTELS 176

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I  S   L+ LIN++LD S+IEAG+ EL      L D + + +  L  RA 
Sbjct: 177 VQQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAA 236

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ- 401
            K +E+   +   +  ++  D   +RQ+I NL+ NA+KFT  G  V  V +  T+     
Sbjct: 237 HKGLELAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQ 296

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               ++D G GI++ +   V T+FGQ   +      G GLGL IA  +    GG+  + S
Sbjct: 297 LEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLES 356

Query: 461 KLREGVEVIA 470
           +   G     
Sbjct: 357 EPGVGSTFSF 366


>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1285

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              H     + +++   ++  +  +         + ++ A+  N AKS FLA+MSHELRTP
Sbjct: 776  PRHWEDREISLMARVGDQLGVAMQQAELLEQLTKAKETADAANKAKSEFLANMSHELRTP 835

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LNAILGF++++         ++   EY+G I RSG+HLL+L+N++L++S+IEAGR  L+E
Sbjct: 836  LNAILGFTQLLAR---DSSLSDKQHEYVGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNE 892

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
            +   L  ++     M QL+AQ K +++     P +   +  DE  +RQ+++NL+ N +KF
Sbjct: 893  NHFDLYRLLNTLEEMFQLKAQSKGLQLIFDCHPDVPQYIKTDESKLRQILINLIGNGIKF 952

Query: 383  TAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            T +G  +  V +   S       ++D G GIA  E+ T+   F Q     KS  +G GLG
Sbjct: 953  TEVGSVILRVKLSLLSTMTIDFEVEDTGLGIAPEELDTLFQPFIQTVSGRKSQ-EGTGLG 1011

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            LPI+Q  +   GG   ++S L +G      +P T+  +  
Sbjct: 1012 LPISQKFVQLMGGNISVKSNLNKGSMFRFEIPFTQSESAQ 1051


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 9/260 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +     L A++       +  R+ AE  N +KS FLA+MSHE+RTPLNA+LG   ++ 
Sbjct: 623 ELEQHHTHLEAQVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLR 682

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +           + +  I  + QHLL +IN+ILD+S+IEAG+  L E+ + +  I++  
Sbjct: 683 RDAPTL----EQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRV 738

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + +L  RA++K +E+    D    +   D   + Q ++N   NAVKFT   G + +    
Sbjct: 739 VSVLGDRARQKGLELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFT-EHGSITLKARR 797

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +           ++D G GI++  I  +   F Q   +      G GLGL I + +   
Sbjct: 798 MADDSNGVLIRFEVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAEL 857

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG+  + S++  G      
Sbjct: 858 MGGKVGVSSRVGAGSRFWFT 877


>gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1162

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +      R  AEE + AKS FLA+MSHE+RTPLN ++    ++E  ++GP   
Sbjct: 386 ISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP--- 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+     S + LLN+IN+ILD SRIEAGR EL+     L   +   +++L  RA+
Sbjct: 443 -EQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRAR 501

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K +E+    D      V  D   +RQ++ NL+ NAVKFT   G + V V          
Sbjct: 502 SKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEK-GYILVQVSLAEAGEEKA 560

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS++D G GI       +   F Q   +      G GLGL I++S++   GG   + 
Sbjct: 561 RLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQVM 620

Query: 460 SKLREGVEVIAIL 472
           S+  EG      L
Sbjct: 621 SREGEGSTFFFEL 633


>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 1126

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 134/261 (51%), Gaps = 8/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    E   RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 568 VTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 624

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +I  I +SG  LL +IN+ILD S+I+AG+ +L ++A  + + V +   +L   A 
Sbjct: 625 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 683

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V     +G    
Sbjct: 684 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVAGGEIM 743

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I+D G GI E ++ +V   F Q   +     +G GLGL I   ++   GG   + S
Sbjct: 744 ANIRIEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVES 803

Query: 461 KLREGVEVIAILPNTRVLNFI 481
           +  EG      LP       +
Sbjct: 804 QWGEGSVFTVNLPFAVAAAHL 824


>gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 957

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHELRTPL ++LGF+E++  +T+     E  K+Y+  I++  Q L +
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK---EERQKKYLTTIYQEAQRLTS 637

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ R+EAG+    +    ++ ++++ I + +++  +   E     D    +V  
Sbjct: 638 LINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKH--EFDMISDQEHFTVMG 695

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + Q+  N++SNAVK++  GG V V V +      YI I+D G GI    +  + T 
Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDEGIGIPSEALGQLFTK 754

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +      G GLGL I + I+  HGG   ++S+ ++G     +LP 
Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLPL 805


>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1769

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 22/291 (7%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDET----------RKRAEEENLAK 249
              H  +S++ +    + +  +  +     E  +    E            +        K
Sbjct: 1317 PRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNQELIRATRLK 1376

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
              FLA+MSHELRTPLNAILG +E +  E  GP+ N+   + +  + RS  HLL LIN+IL
Sbjct: 1377 DEFLANMSHELRTPLNAILGMTEGLHEEVFGPV-NDRQLKALQTVERSASHLLALINDIL 1435

Query: 310  DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            D+++IE+G+ EL  S  ++  + +  I  ++ +A +K I++   +  +L  +  DE+ +R
Sbjct: 1436 DVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNLPDIILDERRIR 1495

Query: 370  QVILNLLSNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            QV++NLL+NAVKFT  GG + + V                 S++D G GI+   I  +  
Sbjct: 1496 QVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIGISPENIKKLFQ 1555

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F Q   A+    QG GLGL + + I+  HGG+  + S++  G      LP
Sbjct: 1556 PFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGSCFSIDLP 1606


>gi|238499603|ref|XP_002381036.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
 gi|220692789|gb|EED49135.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
          Length = 900

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 269 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 328

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 329 DTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNA 385

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 386 LKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIR 444

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 445 KSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKR 504

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 505 LVNLMGGDVWVTSEYGHGSTFHFT 528


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1236

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 10/283 (3%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
               +       +  S              I   +  +    E ++ AE  N+ KS FLA
Sbjct: 668 GLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEAKQDAELANMYKSEFLA 727

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+G  ++ +  ++        ++Y+     S Q LL +IN+ILD S+I
Sbjct: 728 NMSHEIRTPMNAIIGMLQLAQRTSLTV----QQQDYLNKAGFSAQSLLRIINDILDFSKI 783

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVIL 373
           EAG+ EL   A  L  ++   I +  ++AQEK +E+      +   + + D   + QVI+
Sbjct: 784 EAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLILYGDPLRLGQVIV 843

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNAVKFT   G V +       R   I+    ++D G GI++ +   +  +F Q   
Sbjct: 844 NLLSNAVKFTQT-GEVELGCEDVGERDDRITMKFWVRDTGIGISKDQQAMLFDAFSQADG 902

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I++ +++  GG   + S+L  G      +
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTI 945


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRF 252
           L ++       +A      AELE A +L  E               +  AE  + AKS F
Sbjct: 174 LQETKANADELEARVRARTAELESANALLHEEIGRRMLVELDLKRAKDAAEAADRAKSVF 233

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+N +LG + ++    +    N    +    + +SG+ LL +IN+ILD S
Sbjct: 234 LANMSHEIRTPMNGVLGMANLLLATPL----NPEQHDLAETLCQSGESLLTIINDILDFS 289

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           +IEAGR EL      L D +   + +    A  K++E+   IDP++   V  D   +RQ+
Sbjct: 290 KIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHVRGDPGRLRQI 349

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +LNL+ NA+KFT   G V V V              ++ D G GI E     +   F Q 
Sbjct: 350 LLNLVGNAIKFTEK-GEVVVKVTVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQA 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +      G GLGL I + +     G   + SK  EG      
Sbjct: 409 DTSTTRRFGGSGLGLVICKRLAELMSGSIGVESKPNEGSTFWFT 452


>gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 448

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 12/309 (3%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-----------DLIA 226
            ++  ++  +  +      +           ++ + +   + E +             I 
Sbjct: 136 RVLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVADRTRALMQEIQ 195

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E   A+    + +++AE  N AKS FLA+MSHELRTPLNAI+GFS ++E E +GPL +  
Sbjct: 196 ERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMESEIVGPLGHPK 255

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y +Y   I +SGQHLL +I++ILD+++IEAG+ E+    + + D V   ++++  RA+E 
Sbjct: 256 YLDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAERAKEG 315

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + + Q I P    +  D   ++Q++LNLL+NAVKFT  GG V + V    G    I + 
Sbjct: 316 GLTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRP-EGGRILIEVA 374

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G++   I   L  FGQ    +     G GLGLP+ +S +    G   IRS+  EG 
Sbjct: 375 DSGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLDIRSREGEGT 434

Query: 467 EVIAILPNT 475
            +   LP  
Sbjct: 435 TISVRLPVA 443


>gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 404

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 7/387 (1%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
             ++ +       + +          +     +  + L            I +   L I 
Sbjct: 22  AVRRALKKAGIAAQFHEATDAEEALALVSQTTFDCIFLDYRLPDYDGLDLIKQLKGLGIQ 81

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           + +  L+                    +++ +S   L  +L   L    +          
Sbjct: 82  VPLIVLTGQGDEQIAVEMMKAGASDYLSKSRVSPETLSQTLRNALRIYQAE-----KEAA 136

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++N+K+            ELE  +   +   ++ +E +  KS+FLA+MSHELRTP+NAI+
Sbjct: 137 QANLKLRETNQLLKQQNQELERQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIM 196

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS+++      PL      + +  I  + ++LL L+N++LD S+IEAG+  L      L
Sbjct: 197 GFSQMLLRRYPEPLT-PAQTDLVQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDL 255

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             +V      L+  A  KN+ +  +++     +  D+  +R++++NLLSNA+KFT  GG 
Sbjct: 256 KQLVVLTTEELRSLAISKNLSLQIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGG- 314

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V VTV   +     I+++D G GIA+  +  +   F Q    +     G GLGL I++S+
Sbjct: 315 VSVTVWELNPDLMAIAVEDTGIGIAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESL 374

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475
           +    G+  + S+L +G       P  
Sbjct: 375 IKMMHGKITVTSELGKGSIFQIEFPRK 401


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 142/304 (46%), Gaps = 10/304 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++      +   T  + +            +  I +   A+++    R+ AEE N AKS 
Sbjct: 526 IIVHGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQSARQAAEEANKAKSA 585

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTP+NAILG   ++    +         +Y      + + LL L+N+ILD 
Sbjct: 586 FLANMSHELRTPMNAILGMLTLLRKTGLNN----KQADYAVKSEAATRTLLRLLNDILDF 641

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+  L      +  ++R+  ++L    + K +E+   IDP+L   V  D   ++Q
Sbjct: 642 SKIEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQ 701

Query: 371 VILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NL  NA+KFT  G  V  + V     +    +  ++D G GIA     ++   F Q 
Sbjct: 702 ILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGIAPEHQESIFGGFTQA 761

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIPEDN 485
             +      G GLGL I+Q  +A  GG+  + S+  +G        LP +   N + ++ 
Sbjct: 762 EASTTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTITLPLSSPSNLVIDNE 821

Query: 486 HEST 489
             ST
Sbjct: 822 IPST 825


>gi|332532699|ref|ZP_08408575.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037915|gb|EGI74364.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 888

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 15/344 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L++ +SI  L   +      L   P+ +  +    +    L + L       +
Sbjct: 290 AISLITGLIVIISIITLPILIFIVVRNLLLNPIELLGAASHRVGDGDLSVHLPAHTNDEV 349

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAK 249
                   H+            E    + +         E   S  +    +AE+ N  K
Sbjct: 350 GVLFNDFNHMVNQIRHYQQQLEEYKHHLEDKVESRTKALEAMNSQLELAIGQAEQANQLK 409

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           SRFLA+MSHE+RTPL AI+GF+E +        +    K+++  I R+ +HLL LIN IL
Sbjct: 410 SRFLANMSHEIRTPLTAIMGFTEQLLHNDKVAND----KQHLSTILRNSKHLLELINNIL 465

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IEA +  +  SA++++ +V +   ++Q  AQEK + +       L   +++D   +
Sbjct: 466 DLSKIEAEKLAVDLSALNVVQLVHDIESIIQPLAQEKQLTLNIDYQLPLPRTIYSDVTRL 525

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +Q+++N+ +NAVKFT   G V + V +  + +     IKD G G++E +I  V   F Q 
Sbjct: 526 KQILINIANNAVKFT-ENGSVSICVHYLQASQKLEFVIKDTGIGMSEHQIERVFKPFEQA 584

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                    G GLGL I++++    GG   + S++  G      
Sbjct: 585 DATTTRRFGGTGLGLCISKNLALLLGGDVTLESEVGVGSRFTIR 628


>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 693

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 102/289 (35%), Positives = 159/289 (55%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +T    +++   ++      + + E   A  +     +++E  N AK  FLA+MSHE
Sbjct: 388 WLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHE 447

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFSE+I  +++GP+ N  Y EY  DIH SG+ LL++INEILDLS IE GR 
Sbjct: 448 LRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRVLLDVINEILDLSAIETGRR 507

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL E  + +  +VR  + +++ RA +  + +   +D +L  V ADE  ++Q++ NLLSNA
Sbjct: 508 ELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPLVRADETALKQILSNLLSNA 567

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT  GGR+      T      ++++D G G+   ++   +  F Q    +     G G
Sbjct: 568 VKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHAMEPFRQVEKPLTRHAGGAG 627

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           LGLP+ ++++  HGG F + S    G      LP  RV    P +   +
Sbjct: 628 LGLPLVKALVDLHGGSFELESTPDAGTLASVWLPADRVRRDTPPEASRT 676


>gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1115

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 137/261 (52%), Gaps = 10/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +    L +  R++AE  N AKS FLA+MSHE+RTP+NA++GFSE+   +     N 
Sbjct: 594 ITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRTPMNAVIGFSELALDDP----NP 649

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + + ++  I  S + LL ++N+ILD S+IE+ +  L    ++L +++ +   M  ++A+
Sbjct: 650 VSQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLEMEVLNLDELLGQVRRMFVMQAK 709

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           E+ +++    +  + ++   D   +RQ++ NLL NA+KFT  G   ++V    T+     
Sbjct: 710 ERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAIQTNSENVT 769

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +KD+G G++  ++ ++   F Q   +I     G GLGL I++++     G   + S
Sbjct: 770 LDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGTGLGLTISRNLARLMDGDIRVDS 829

Query: 461 KLREGVEVI--AILPNTRVLN 479
               G E      LP    + 
Sbjct: 830 VAGTGSEFHFEVTLPIANAMQ 850


>gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 2333

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ A +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1885

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   N+   EY+  I      LL LIN
Sbjct: 1886 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTNLNKEQDEYVESIRVCADTLLTLIN 1941

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + +D       V  D
Sbjct: 1942 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVLGD 2001

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +   + D G GI E +   + 
Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKGRLRLECAVSDTGIGIPEEQKSRLF 2061

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L  ++  + 
Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFRLSFSKAKDP 2121

Query: 481  I 481
            +
Sbjct: 2122 L 2122


>gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 586

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 150/296 (50%), Gaps = 2/296 (0%)

Query: 181 SMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              VL   LA +      +        + + +    + Q   + L   +       D  R
Sbjct: 292 WRWVLARGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANEQLEQRVVERTRELDLAR 351

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AEE N  KS FLA+MSHELRTPLNAI+GFS+V+     GP+ N  Y EYIG I  SG 
Sbjct: 352 CQAEEANRCKSEFLANMSHELRTPLNAIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGH 411

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL +IN+ILDL+++E GR++LS  +  ++ ++   I ++  RA    + +  K +P L 
Sbjct: 412 HLLRIINDILDLAKVEVGRFDLSRESTPVLPLLESAIRLVSERATRAEVNVGCKAEPGLG 471

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
               D   M+QV+LNLLSNAVKFT  GG V +           I + D G G+ E  +  
Sbjct: 472 DAMLDPLRMKQVLLNLLSNAVKFTPAGGSVSLEARHEGTDLVLI-VADTGIGMDEESLEK 530

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            L  F Q   ++     G GLGLP+A+S    HGG   + S+  EG  V   +P  
Sbjct: 531 ALQPFVQVESSLSRRYAGTGLGLPLAKSFSELHGGSLDLVSRPGEGTTVTVRIPRK 586


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +LT +   T  IA+ ++ ++  M    +   
Sbjct: 1102 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1161

Query: 167  FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L TQ              A  L  +          L ++N   L  +AE   L
Sbjct: 1162 SQSLAEELQTQQSELRETNQRLEQQAQSLKASEDLLRGQQEELQQTN-AELEEKAELLAL 1220

Query: 225  IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++  
Sbjct: 1221 QKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTD 1280

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 L      EY   I+ +G  LL LIN+ILDL++IE+G   +  + I L ++  +  
Sbjct: 1281 NVDSNLT-AKQVEYSQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIE 1339

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  AQ K +    ++ P L + V  D K ++QV+ NLLSNA KFT   G V + +  
Sbjct: 1340 RGFGQIAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTER-GEVRLRIEV 1398

Query: 396  TSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                                 ++ D G GIA  +   +  +F Q          G GLGL
Sbjct: 1399 AKPGWNPNQQPLNPAQNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGL 1458

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             I++ I    GG+  + S   +G      LP
Sbjct: 1459 SISREIAHLLGGEIKLTSHPGQGSTFTFYLP 1489


>gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1055

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 157/292 (53%), Gaps = 17/292 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +   L ++ +   +      + I + +  +    +    AE  N  KS FLA+MSHE
Sbjct: 542 WVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVALQQALDAAEAANHGKSEFLANMSHE 601

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAILGF++++         N+  ++Y+G I RSG+HLL+LIN +L++S+IEAGR 
Sbjct: 602 LRTPLNAILGFTQLMAR---DASLNQDQQDYLGIITRSGEHLLDLINNVLNMSKIEAGRI 658

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
            LSE++  L  +V     ML+L+A  K +++  +   ++ +   ADE  +RQ+++NL+ N
Sbjct: 659 SLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGMADEGKLRQILINLVGN 718

Query: 379 AVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           AVKFT+  GRV + V   S R             +  ++D G GI   E+ T+  +F Q 
Sbjct: 719 AVKFTSQ-GRVILRVQEISDRITAPTNTDTQSRLFFEVEDTGVGIPPDELDTLFQAFVQT 777

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             + + ++ G GLGL I++  +   GG   I S   +G  V   +P   VL 
Sbjct: 778 KTS-QRSQSGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFDIPIGIVLQ 828


>gi|153836688|ref|ZP_01989355.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
 gi|149750037|gb|EDM60782.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
          Length = 785

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/271 (33%), Positives = 133/271 (49%), Gaps = 7/271 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+   S  +    +AE    AKS FLA+MSHELRTP+N +LG S++I  ET  P+  
Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE+I  I  SGQHL+ ++N+ILD S++E  + EL ++   L  ++      +Q    
Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQPLID 361

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK+IE+  + D P+ +    D   +RQ++ NL  NAVKFT   G V +         Q  
Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNGEDKQLL 420

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA  +   V  SF Q   +      G GLGL I + +    GG   ++S  
Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G + I  LP     +  P   H   Q + 
Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511


>gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21]
 gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21]
          Length = 1361

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 178/378 (47%), Gaps = 10/378 (2%)

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-----IYKSATLLIALSISALSNF 157
           +  ++   L G++ + L    ++   P   TP         I  +    + +S+ A    
Sbjct: 433 LRRFKRSHLEGELGVILSSGTVSCYAPQEATPLRFATSFGDIVPAEIATVPISVDAEIRA 492

Query: 158 MLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS-FFTYITYHLFKSNVKIL 215
            +  A    F P V   L    +         L+G     L+         L + + +++
Sbjct: 493 FVSIASERPFPPKVREILELVQMPLGSAFARILSGEDVRLLANELALKNAELTQQSEELV 552

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               E      EL     + D  +++ EE    KS FL++MSHELRTPLN++L  S V+ 
Sbjct: 553 QQSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLA 612

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           ++    L  +  K Y+  I R+G+HLL+LIN+ILDL++IE+GR E+   ++SL  +  E 
Sbjct: 613 VQGSSRLTEDE-KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEV 671

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L + A+EK I +  +    L +   D K +RQ++ NL+ NA+KFTA  G V V +  
Sbjct: 672 VDGLSVLAREKGIALSLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAE-GSVTVRLDA 730

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    I ++D G GIA   + ++   F Q   +   + +G GLGL I +      GG 
Sbjct: 731 -EGEEFLIEVEDTGIGIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGD 789

Query: 456 FLIRSKLREGVEVIAILP 473
             +RS+L EG      LP
Sbjct: 790 VSVRSELGEGSVFTLRLP 807


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 1318

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ ++   + ++ A+  + AK  FLA+MSHE+RTP+N ILG   +     +    +
Sbjct: 583 LTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I+ S ++LL +IN+ILD S+IE G+  +     SL ++      ++ L+AQ
Sbjct: 639 PAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400
           EK IE    IDP + + +  D   + QV++NL  NAVKFT  G  V    + +       
Sbjct: 699 EKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIELLTERDVV 758

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            + S+KD G GI + +I  +  +F Q   +I     G GLGL I++ ++   GGQ  + S
Sbjct: 759 LHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSS 818

Query: 461 KLREGVEVIAIL 472
            L  G      +
Sbjct: 819 TLGAGSTFAFTI 830


>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1208

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +   +  R+ AE  + AKS FLA+MSHE+RTP+N I+G +E+     +    +
Sbjct: 534 ITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALDTRL----D 589

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  +  S + LL ++N+ILD S+IEAG+  + E   +    V E +  +  RA+
Sbjct: 590 PTQRDYLNIVLSSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEALKSISTRAE 649

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-- 400
            K +    ++ P L +V   D   +RQV+ NL  NA+KFT  G   V V    ++  G  
Sbjct: 650 RKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAGGDA 709

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +  + D G GI   +   +  +F Q   +      G GLGL I+  ++   GG+  +
Sbjct: 710 LIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGRIWV 769

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S    G      +   R     
Sbjct: 770 DSTPGVGSTFHFTVRLKRRAEPA 792


>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
          Length = 918

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 31/372 (8%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D 
Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++QVI NL+ NA+KFT   G + + V   +         I I+D G GI E +   + 
Sbjct: 407 LRLQQVITNLVGNAIKFT-ESGNIDILVEKRALSNTKVQIEIQIRDTGIGIPERDQSRLF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   +I     G GLGL I Q ++   GG     S+   G      +     L+  
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI----NLDLN 521

Query: 482 PEDNHESTQYKC 493
           P    ++   +C
Sbjct: 522 PNVISDAPPTRC 533


>gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina loihiensis L2TR]
          Length = 866

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ ++      ++ ++ AE  N +K  FLA+MSHE+RTP+NAI+G + +     +     
Sbjct: 184 ISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTEL----T 239

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K YI  I  S Q LL +IN+ILD S+I+AG+  +      L D++     M   RA 
Sbjct: 240 QKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAY 299

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K++E    +  ++   +  D   + QV++NL+SNA+KFT   G ++V V          
Sbjct: 300 DKDLEFIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFT-EDGEINVAVNLLDSSRDNV 358

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G G+ E +   +  +F Q   +      G GLGL I++ ++   GG   + 
Sbjct: 359 LLRISVTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVT 418

Query: 460 SKLREGVEVI--AILPNT 475
           S   +G        LP  
Sbjct: 419 SAAGQGSTFYIEVELPLQ 436


>gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
 gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
          Length = 649

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 30  RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 89

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 90  QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 149

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 150 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 205

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 206 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 265

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 266 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 323

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 324 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 356


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 17/300 (5%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +F      +       +         I E + A+      ++RAE  + AKS FLA++S
Sbjct: 253 VWFESTVRPVQNMETGKVQEVVFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVS 312

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL+ I+G  +++    +     E    Y   I    + L ++IN+ILD S++EAG
Sbjct: 313 HEIRTPLHGIIGMIDLLLDTAL----TEEQASYGRTIGELSRLLSSIINDILDFSKMEAG 368

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376
           R EL      L  +V + + +L++R+++KN++I   ID      +  D   +RQV++NL 
Sbjct: 369 RIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLG 428

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFG 425
            NAVKFT   G+V + +   S   Q              I D G GI +   P +   F 
Sbjct: 429 GNAVKFTEK-GKVALRIAMDSRAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFS 487

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q  ++      G GLGL I++ ++   GG+   RS    G      +P         ED+
Sbjct: 488 QADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGTTFWFTMPLLESSAQAAEDS 547


>gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1040

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/405 (27%), Positives = 196/405 (48%), Gaps = 4/405 (0%)

Query: 76   SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
             +   A  + + +  +       +          +   +    +       V        
Sbjct: 636  VMSFFASPSLSAAALRSEPEVPPQGDAAETDADLVAEVEELQAVLSAATDGVVLIDREGM 695

Query: 136  YLTIYKSATLLIALSI--SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
              ++ ++A  L  +    +A   F+   A       +    + +   +    D     + 
Sbjct: 696  IRSMNRAAHALFGIGADDAAGRPFVTLLAHESQKPTLEHIETLRTASATAPRDDGREVIG 755

Query: 194  ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              A   F  ++    +   +   C   +D  I+  +  +    + R  AE  +L KS+FL
Sbjct: 756  RVAEGGFVPLSVSFGRLPEERGWCAVIRD--ISRAKRVEQELIKARSEAEAASLQKSQFL 813

Query: 254  ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            A++SHELRTPLNAI+GF++VI  E  GP+ NE Y EY+ DI RSG H+L+L+N++LD+S+
Sbjct: 814  ANVSHELRTPLNAIIGFADVIATECFGPIGNERYLEYLDDIKRSGHHVLDLVNDLLDISK 873

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            IEAG+ EL+  A+SL +++ E + ++Q +A  + + +   +  S+  V AD + MRQ+ L
Sbjct: 874  IEAGKLELAFEAVSLNEVIGEVVALMQPQANREQVIVRSNLPSSVPPVVADRRSMRQIAL 933

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NL+SNAV+FT  GG++ V+  ++      +  +D+G G++E EI   +  F Q +   + 
Sbjct: 934  NLVSNAVRFTPAGGQIIVSTSYSPEGDVVVRFRDSGIGMSEDEIEIAMMPFQQVNPGNRR 993

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
              +G GLGLP+ +++   +   F + S   EG  V    P  RVL
Sbjct: 994  RGEGTGLGLPLTKALAEANRAGFAMSSTPGEGTLVEISFPPQRVL 1038


>gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 936

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 742

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 743 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 803 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 915 KGSRFWFTIPGVIVTEEM 932


>gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 926

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 793 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 905 KGSRFWFTIPGVIVTEEM 922


>gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 957

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 708 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 763

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 764 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 823

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 824 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 879

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 880 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 935

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 936 KGSRFWFTIPGVIVTEEM 953


>gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 936

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 742

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 743 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 803 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 915 KGSRFWFTIPGVIVTEEM 932


>gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1200

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 162/357 (45%), Gaps = 8/357 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            +L L     ++P  +   K+    + L+  ++ + +    +          L +Q    
Sbjct: 404 GVLELGATHEYSPRQIEFLKAVAGNVGLAFHSVQSRIKLQELLEETQAQSEELQSQHSEL 463

Query: 182 MHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            ++     A    L  +          L +SN ++    A  ++    +E       +  
Sbjct: 464 ENINSELEAQSQKLLASEEELRVQQEELLQSNQELEERSALLEEKNMLIEQRNIDIQQKS 523

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              E+    KS FLA+MSHELRTPLN+IL  S+++         +E Y EY   +  SGQ
Sbjct: 524 IELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTE---SEDLDEQYVEYAAVMQSSGQ 580

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LI+EILDLS+IE+G+  L    + L +I  +  ++    A++KN+E+  + +    
Sbjct: 581 GLLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLPMAKDKNLELKVETEAQAP 640

Query: 360 SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEI 417
            +   D+  + Q++ NLLSNA+KFT+  G + + V            + D G GIA+ ++
Sbjct: 641 QMLQTDKLRLEQILKNLLSNAIKFTST-GSITLQVSGDEAHTKIIFKVIDTGIGIAKDKM 699

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             V  +F Q   + +    G GLGL I++ +    GG+  + S   +G E    +P 
Sbjct: 700 RLVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLESTEGKGSEFTLTVPV 756


>gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 926

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 793 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 905 KGSRFWFTIPGVIVTEEM 922


>gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans
           OS217]
          Length = 950

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               I     +LI +  +    F L   V    FP+   +   A +    LD  L G L 
Sbjct: 202 HRAAIAAFVIVLIGVQFNLFFTFRLVKHVN---FPITEMVRVVAKIREGKLDARLDGNLI 258

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEEN 246
             L         +  S  +      +          + + ++E+     D  +KRA+E +
Sbjct: 259 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNVELDLAKKRAQEAS 318

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 319 QIKSEFLANMSHELRTPLNGVIGFARQLIKTPLHA----SQLDYIKTIDRSATNLLGIIN 374

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S++EAG+ EL +   SL + V E I ++   AQ K +E+   ID ++   V  D 
Sbjct: 375 DILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHVSGDA 434

Query: 366 KGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G  V   + V  T  R      + D G GI + +   +  
Sbjct: 435 MRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQEYLFQ 494

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G     ILP 
Sbjct: 495 AFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFWFILPL 546


>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 927

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 8/279 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 239 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 299 HELRTPLNGVIGFTRQMLKTKLTN----SQADYLQTIEKSANNLLNIINDILDFSKLEAG 354

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        + + E + +    A EK +E+  K+DP + + +  D   ++QV+ NL+
Sbjct: 355 KLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIPAGLVGDPLRIQQVLTNLV 414

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            N++KFT  G   + V +         +   ++D G GI+E +   +  +F Q   +I  
Sbjct: 415 GNSIKFTERGNIDISVELRSQKEDAVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 474

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I Q +++  GG+  + S+L +G      L
Sbjct: 475 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513


>gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 422

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  +  F++++SHELRTPL +I G++E +  + +   N E  ++++G I      +  
Sbjct: 182 QLDKLRREFISNVSHELRTPLTSIHGYAEALLDDDLS--NKELVRKFLGVIESESARMTR 239

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LDL ++E+G  + + S +++  ++   + +L+  A++  +E++ K +   S+V+ 
Sbjct: 240 LINDLLDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCE-CKSTVYG 298

Query: 364 DEKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTV 420
           D   + Q++LNL+ NAVK+T     G   V V  +         ++D GPGI E     +
Sbjct: 299 DFDRLVQLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGIPEDAQKRL 358

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + I   H       SK+ EG       
Sbjct: 359 FERFYRVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTTFRVYF 410


>gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 881

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 8/279 (2%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             ++  L    +            I E +  +    E R  AE  N AKS FLA+MSHE+
Sbjct: 459 IVVSLSLSAVFLNGRWYAVGLLRDITESKHYQEELLEARHSAEAANRAKSEFLANMSHEI 518

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N ++G ++++             +EY+ ++  S ++LL LIN+ILDLSRIE+G+ E
Sbjct: 519 RTPMNGVVGMAQLLR----YTQPTREQEEYLDNLELSCKNLLELINDILDLSRIESGKLE 574

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L  +  SL   ++E +     R ++K +++   +D  +   V  D    +Q++LNLL NA
Sbjct: 575 LEAAVFSLRSCIQEVVSNQASRIEQKGLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNA 634

Query: 380 VKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT  G       ++    +G    + + D G G+ E  +  +  SF Q   +      
Sbjct: 635 IKFTEAGSITVSGQISSRQETGCTFRLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYG 694

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL I + +    GG+    S   +G      LP  
Sbjct: 695 GSGLGLAICRRLTELMGGRIWAESTFGKGSAFFVELPFA 733


>gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
 gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
          Length = 1053

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 10/254 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              +   ++ +   ++ R +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P
Sbjct: 274 LRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP 333

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +YI  IH S   LL +IN+ILD S+IEAG+  +      L D++    ++   
Sbjct: 334 ----KQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSMVTGQ 389

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EK +E+  +ID ++  V + D   + Q+I+NL++NAVKFT   G + V V       
Sbjct: 390 KAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQ-GEITVHVTKKPYSE 448

Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           + I     ++D G G++  +   + ++F Q   +      G GLGL I + ++   GG  
Sbjct: 449 EKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGDI 508

Query: 457 LIRSKLREGVEVIA 470
            + S + +G +   
Sbjct: 509 HVESAVGKGSQFKF 522


>gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1045

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 833

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP       +P +  +
Sbjct: 890 GSRFWFTLPFQPKKELLPSEEQK 912


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205
           +A +I A +   L + V +S   ++V   T  ++     ++ L     +  ++       
Sbjct: 285 LAQTIKATTQQRLVFIVIMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE       E + AKS FLA+MSH
Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G 
Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  +A+EK IE+   I P+    +  D+  +RQVI+N +S
Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + +T   ++     I  S++D+G GI E +   +   F Q   +    
Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG   + S+   G      L
Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
 gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
          Length = 886

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 170/354 (48%), Gaps = 17/354 (4%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                + + +++     ++I++    +  F++   +     P+ +  +    +    L +
Sbjct: 282 AVLHQSGKAISLITGLIVIISVISLPILIFVVVRNLL--LNPIELLGAASHRVGDGDLAV 339

Query: 188 SLAGMLATALSF----FTYITYHLFKSNVKILSCQAEKDDLIAELEVA----KSLSDETR 239
           SL       +      F ++   +     ++   +   +D +     A     S  +   
Sbjct: 340 SLPAHTDDEVGILFNDFNHMVNQIRHYQQQLEEYKHHLEDKVESRTQALESMNSQLELAI 399

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE+ N  KSRFLA+MSHE+RTPL AI+GF+E +        +    K+++  I R+ +
Sbjct: 400 TQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKIVND----KQHLSTILRNSK 455

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN ILDLS+IEA +  + +++++++ +V +   ++   AQEK +E+    D  + 
Sbjct: 456 HLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLELNIIFDLPIP 515

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEI 417
            +++ D   ++Q+++N+ +NAVKFT   G V + V + +        I D G G++E +I
Sbjct: 516 QTIYTDVTRLKQILINVANNAVKFTEQ-GHVSICVHYHAKSNLIEFVITDTGIGMSEHQI 574

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             V   F Q          G GLGL I++++    GG   + S++ EG E    
Sbjct: 575 SRVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGSEFSIS 628


>gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
 gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
          Length = 803

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 157/342 (45%), Gaps = 14/342 (4%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +                   +  + +  +    +     +   L     +          
Sbjct: 335 MFRKAFSLESIRESVAAGETVIVRELRRLAPDGVYRWTEMIGILVISAAVGER------T 388

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           ++    + DD+  E E  ++   +    AE+ N AKS FL+ MSH++RTP+NAI+G + +
Sbjct: 389 VVLTFRDVDDIRKEEERKRAALLDALNLAEQANNAKSDFLSRMSHDIRTPMNAIIGMASI 448

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            E      +  E   + I  I  S   LL LIN+ILD+S+IE+G+  +      L  ++R
Sbjct: 449 AEANIRDTVKTE---DCIHKIQASAHFLLALINDILDMSKIESGKMSIIREPFDLCALLR 505

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E  +++  +A+EK  +    +   + +  + D   + Q+++NLLSNAVK+T  GG++ + 
Sbjct: 506 ELEVIIDAQAREKGQQFSVLMPAHMEAEYYGDSLRLNQILMNLLSNAVKYTPDGGKITLR 565

Query: 393 VGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V     +G+       ++DNG G++E  +  +   F Q     +  ++G GLGL I +++
Sbjct: 566 VNEDRKKGKKSVMRFEVEDNGIGMSEAFLKHIYEPFRQDERKEEKRQEGTGLGLSITRNL 625

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +   GG   I S+L +G      LP  +     PE + E+ +
Sbjct: 626 VHLMGGSISISSELGKGTCFTVELPFVQEEGNWPEASSENKK 667


>gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 1089

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE    AKS FLA+MSHE+RTP+N ILG   ++    +     +   + +
Sbjct: 699 QKELVIAKEMAEASEEAKSEFLANMSHEIRTPMNGILGMISLLSESDL----TKEQMDML 754

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG  L+ ++N+ILD+S+++AG+YEL      + + +     +    A EK I + 
Sbjct: 755 ETIQSSGDILMTILNDILDISKLDAGKYELDIRDFDIRNCIENTTFLFSTLASEKGINLT 814

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIK 406
             I   +   +  D   +RQ+++N LSNA+KFT   G V + VG      +     IS+ 
Sbjct: 815 STISSVVPLFLKGDVTRIRQILVNFLSNAIKFTER-GEVKIEVGAIKKSDRDVSLVISVI 873

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI       +  +F Q   +      G GLGL I   ++    G+  + S+  +G 
Sbjct: 874 DTGIGIHSDAQENIFEAFSQADSSTTRVYGGTGLGLSICSKLIEIMDGEVKLESEPGKGT 933

Query: 467 EVIAILPNTRVLNF 480
            +   LP    +  
Sbjct: 934 NITFSLPLEIGVES 947


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 152/400 (38%), Gaps = 28/400 (7%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
               +  +   + ++       R   L+  + +G   ++  L                  
Sbjct: 132 IAAWVRIEFSLAAMQEELTREARHLFLLSVLFMGATISVAQLGIRRMSGLFRE------- 184

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
                                +   V     +    S H    +              + 
Sbjct: 185 -----------TAEKLQKTLHTLHCVSEQAPSGDAASDHDNSHASPSCKGDLEQVVDLVE 233

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   +    Q+  D L   +    +   + ++ AE  N AKS+FLA+MSHE+RTP+
Sbjct: 234 TTTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPM 293

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LG +E++    +     +  +     +HRSG  L+++INEILD S+IEAG+ +L   
Sbjct: 294 NGVLGMTELLLSTAL----TQKQRSLTETLHRSGTGLMDIINEILDFSKIEAGKLKLERI 349

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              L   V + + +    A  K++E+   + P +  +V  D   +RQ++LNL+ NA+KFT
Sbjct: 350 EFGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFT 409

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V VT+   +           I+D G GI E     +  +F Q   +      G G
Sbjct: 410 -QSGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTG 468

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           LGL I + +    GG   + S   +G      +   +   
Sbjct: 469 LGLAIVKQLALLMGGDVGVDSVSGQGSTFWFTVELEQAAQ 508


>gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1321

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 11/278 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I   +  +      ++ AEE   AKS FLA+MSHELRTP+N I+G +       +   
Sbjct: 921  HDIEVRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRTPMNGIIGMT----GLLLELE 976

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 + +   I  S   LL L+N+ILDLS+ EAG+        +L D V + + +L+  
Sbjct: 977  LTRDARNFGETIRDSAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLLETT 1036

Query: 343  AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A  KN+E+  +I   L  S+  D   +RQV+LNL+ NA+KFT   G V V+V   S   +
Sbjct: 1037 ANSKNLELLSEIPEKLPDSLLGDAGRLRQVLLNLIGNAIKFT-ESGHVKVSVSKISDDNE 1095

Query: 402  ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                   I D G GI+E   P +  SF Q   ++     G GLGL I++ I+   GG+  
Sbjct: 1096 KEIYRFQIMDTGIGISEKAKPKLFQSFEQADNSLARRFGGTGLGLKISKEIVTLMGGEIG 1155

Query: 458  IRSKLREGVEVIAILPNTRVLNFIPEDN-HESTQYKCY 494
            + S   EG      LP  +  + IP    H++ Q K +
Sbjct: 1156 MESTEGEGSTFWFTLPLKKETSQIPSPTKHKTGQKKKH 1193


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 10/239 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I R+
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K IE+   + P+
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
            +   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G G+
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             E +   +  SF Q   +      G GLGL I + ++   GG+  + S+L  G      
Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTFYFT 1265


>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
 gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
          Length = 796

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 140 YKSATLLIALSISALSN----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
           +  ATL +   +S + N     +L    F +    +++L + AI+   V+   +      
Sbjct: 125 FPLATLTVQSDLSMILNDFEERVLLLLAFEAVKIFLLSLVSLAIVYRLVVKRLMTMSSQI 184

Query: 196 AL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
                      F   T   +K  +  L      +  I  +        + ++ AE  N  
Sbjct: 185 NEQQVEDNKPRFLTPTDSTYKDEISTLENSY--NQSIERIRQQYQELIKAKETAEVANRN 242

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N I+G S ++    M     +  KEY+  ++ S   LL+LIN+I
Sbjct: 243 KSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVNMLNTSSLTLLDLINDI 298

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAGR EL +  + ++ I  +     +++A++K +    +IDP +   V  D   
Sbjct: 299 LDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLEIDPKIPTMVIGDGTQ 358

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVL 421
           +RQV+ NL+ NA+KFT   G V +++                 + D+G GIAE +  +V 
Sbjct: 359 LRQVLNNLVGNAIKFTER-GHVTLSLRLEKVIEPEQKLRVRFEVADSGIGIAEDKQKSVF 417

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             F Q   +      G GLGL I   I+   G +  + S   +G     +
Sbjct: 418 DKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSIEGKGSTFYFV 467


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 32/389 (8%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L E    +     I     +L  + + +   F   +  FL     +++ +   I++   
Sbjct: 821  GLGEAPPLSLAIFPIVSEDRVLGVIELGSYGTFREIHLNFLRQLVSLLSATITTILANSK 880

Query: 185  LDISLAG---MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL---EVAKSLSDET 238
             +  LA    +          +     +   K     ++   L ++    E+     +  
Sbjct: 881  TEYLLAQSQQLTTALQERSNELQRQQEELRRKNAELHSKAGQLASQNRAIELQNRQIERA 940

Query: 239  RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            R+  E+        +  KS FLA+MSHELRTPLN++L  + ++   +   L      E+ 
Sbjct: 941  RRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNLT-PKQVEFA 999

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I+++G  LL LINEILDLS++EAGR EL+ S +S+  +V       +  A EK +   
Sbjct: 1000 QTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEKGLAFA 1059

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG------------RVHVTVGWTSG 398
             ++ P +   +W DE+ ++QV+ NLLSNAVKFT+ G              + V       
Sbjct: 1060 VEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDTFTDPD 1119

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 S+ D G GI E ++  +  +F QG         G GLGL I++++    GG+  +
Sbjct: 1120 EVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIRV 1179

Query: 459  RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             S + EG     +LP       +PE   E
Sbjct: 1180 SSTVGEGSTFTLLLPVR-----LPEGTSE 1203


>gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 914

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 13/266 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    N 
Sbjct: 506 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----NE 561

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   +  + + LL LINEILDLS+IE+G  E + + + L  + +E       R  
Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           +  +E+  +       +  D+  + QVI NL+ NA KFT  G   H++ G+   G+    
Sbjct: 622 K-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTAG---HISYGYHQEGKYVAF 677

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  ++  V   F +      +  QG GLGL I ++I+   GG   + S++ 
Sbjct: 678 HVTDTGMGIAPDKVDRVFERFVKV----NNFAQGTGLGLSICKTIIERLGGNISVTSEVG 733

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489
           +G     +LP         E   E+ 
Sbjct: 734 KGTTFTFVLPLEAASKTEAEKKEENN 759


>gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 810

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 12/296 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +  +      ++     +      ELE A +   + ++ A+  + +KSRFLA++SHE+
Sbjct: 255 ANLKRNREDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEI 314

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N +LG   ++    +        +EY   I  SG+ L+ +IN++LD SRIE+G+ +
Sbjct: 315 RTPMNGVLGMVSLLLETDL----QAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLK 370

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           + +   +   ++ E   +   RA++K + +   +   +   +  D   +RQV+ NLL NA
Sbjct: 371 MEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNA 430

Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           VKFT   G + +TV     G    +S  + D G GI +  +P +   F Q   +      
Sbjct: 431 VKFTLK-GTITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFG 489

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL---NFIPEDNHEST 489
           G GLGL I + ++   GG     S+   G      +  + V       PE +HE+ 
Sbjct: 490 GTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFTVALSVVPDTGEPEPEPSHEAA 545


>gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 1780

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 9/257 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              +    +     + K+A++ N+AKS FLA+MSHE+RTP+ A+LG+++++    +G    
Sbjct: 1375 FTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIRTPMTAVLGYTDLL----IGMEQE 1430

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +   EY+ +I R+G  LL +IN+ILDLS+IEAG+ E+S+ + SL +++ +   M+++RA+
Sbjct: 1431 QEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEISQESFSLNEMLADLQSMMRVRAE 1490

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSGRGQ 401
            EKN+E   +    L   +  D K +RQ++LNL+SNA+KFT  G  +V +  +   +    
Sbjct: 1491 EKNLEFGIEFISDLPERIETDPKRLRQILLNLISNAIKFTETGSVKVVINFLREKADAVL 1550

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
               + D G GI   +   +  SF QG  ++     G GLGL I+Q +     G   + SK
Sbjct: 1551 KFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGTGLGLAISQRLAGMLNGNISVSSK 1610

Query: 462  LREGVEV--IAILPNTR 476
              EG        LP   
Sbjct: 1611 PGEGSTFSCTINLPVRE 1627


>gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 1045

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLRDDNTLWFY 833

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP       +P +  +
Sbjct: 890 GSRFWFTLPFQPKKELLPNEEQK 912


>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 894

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + +  L    ++RAE  + AKS FL+ MSHE+RTPLN I+G  E+ +     P      
Sbjct: 352 EKRSNELLRLEKERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKNHIDEPG---RM 408

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +  I  S  HLL+LIN+ILD+S+IE+G+ EL      L  ++R    +  ++A  + 
Sbjct: 409 RNCLDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQ 468

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402
           I+    +   +   +  D   + Q++ NLLSNAVKFT   G V++ +             
Sbjct: 469 IDFQIFLRGEVTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLR 528

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GIA   I  +   F Q +  I     G GLGLPI +S     GG   + S++
Sbjct: 529 FEVKDTGRGIAPENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEV 588

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G      LP     +  P+D ++  Q
Sbjct: 589 GTGSVFTVDLPF----DCAPDDVYKDAQ 612


>gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 417

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 8/239 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             L +  F++++SHELRTPL +I G++E +    +   + ET ++++  I      +  L
Sbjct: 183 LELMRREFVSNVSHELRTPLTSIHGYAETLLEYDLS--DEETVRKFLRIIEGESARMTRL 240

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL ++EAG  +L    + L ++    I ++   A+E  + I++ ++  +  V  D
Sbjct: 241 INDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEELGVSIYEDMERGV-FVEGD 299

Query: 365 EKGMRQVILNLLSNAVKFT--AIGG--RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              + Q+ LNL+ NAVK+T     G   V + V +T+     + ++D G GI E     +
Sbjct: 300 FDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRV-YTANNYAVLEVEDTGIGIPEEARKHI 358

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A      G GLGL I + I   HGG   + S+   G      LP  +V+ 
Sbjct: 359 FERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLPLKKVIE 417


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1248

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 10/271 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              +     L       + I           + R  A E    KS FLA+MSHE+RTP+N
Sbjct: 557 RAVRDQDGKLLYYEGTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMN 616

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+G + ++    + P      +++   I  S   LL +IN+ILD S+IEAG     E  
Sbjct: 617 GIIGMTGLLLDTELSP----KQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEID 672

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             L  +V   + +L  RA  + IE+         +++  D   +RQV+ NL+ NAVKFT 
Sbjct: 673 FQLGTVVEGSVELLAARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTD 732

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V V                S+ D G GI+      +   F Q   +      G GL
Sbjct: 733 K-GEVVVRANCQENAETHTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGL 791

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL I + ++A  GG+  + S+  +G      
Sbjct: 792 GLAICKQLVARMGGEIGVTSEAGKGSTFWFT 822


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 21/411 (5%)

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV---------- 127
           +    +  +++  ++               + L   + A         L           
Sbjct: 243 LYFISHLLDVTEARRTAARLTLHANTLEALLRLGRMRGANLAALGEFVLSRGVALTASQS 302

Query: 128 -EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                  P        A    AL++  L      + +  S    +     + ++S     
Sbjct: 303 GLAAMSDPATGRFAVLAAGSEALAVFGLGEGTREFELRDSPSLAMAVGDLRPVVSDTPCS 362

Query: 187 ISLAGMLATALSFFTYITYH---LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
                +     +F   +          ++  L+   E      +    +      R++AE
Sbjct: 363 RLATALRGDGQTFILAVAGRAMPYGDDDINRLTLLGEGVLRHVKERRREEDLTTARRQAE 422

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + AKS FLA+MSHE+RTPL+ I+G +++    T+        +E +  I  S + LL 
Sbjct: 423 AASQAKSGFLANMSHEIRTPLSGIIGLTQM----TLTQNPRPEIRENLELILDSSRSLLG 478

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           ++N+ILD S+IEAG+ E       L D +   +   Q  A++K + +  +IDP +   V 
Sbjct: 479 IVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVPAMVH 538

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTV 420
            D   + QV+ NL+ NA+KFT  G   V +++           S++D G GI E  +  +
Sbjct: 539 GDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPGDPMLVSCSVRDTGIGIPEDRLHEL 598

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q          G GLGL I++ ++   GG   + S   +G      
Sbjct: 599 FQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESVPGQGSTFTFT 649


>gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 759

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/337 (32%), Positives = 165/337 (48%), Gaps = 6/337 (1%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           ++  A+     P         V +       +S        + + A  ++          
Sbjct: 416 IAALAIKAEHAPTDGRAGLREVELHDGRWLQLSERFTSEGGSVVTAADITAIKREETERR 475

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++   +    A+ +     L       +    RAE  N AKS FLA+MSHELRTPLNAI 
Sbjct: 476 RAVEDLSRTVAQLEASQQMLSQLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAIN 535

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFSE++  E  GP+  E YK Y GDI +SGQHLL+LIN+ILD+++IEAG+  L    +SL
Sbjct: 536 GFSEIMAAELFGPIG-EKYKGYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSL 594

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            D+  +   +++ +  E  + +  +    L  + AD +G++QV+LNL+SNAVKFT  GG 
Sbjct: 595 RDVCEDAARLMRGKVLESGLTLEIE-AGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGT 653

Query: 389 VHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V +++    G        ++  D G GIA   +  +   F Q         QG GLGL +
Sbjct: 654 VTLSLTPFKGAAGEDRVRVACADTGIGIAPEHMVRLARPFEQVEGQHSKTTQGTGLGLAL 713

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +S++  HGG+  I S+   G  V   LP  R +  +
Sbjct: 714 TKSLIEMHGGRLNIESEPGVGTVVSFDLPTRRPVQTV 750


>gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 865

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 145/255 (56%), Gaps = 9/255 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +    AE+ N AKS+FLA+MSHE+RTP+ +ILG++++I  + +    +E  + ++
Sbjct: 453 ERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI----DEDTRSHV 508

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I R+G  LL LIN+ILDLS+IEA   E+ + +++LI ++ + + ++Q+RA EK++EI 
Sbjct: 509 ATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIMQVRAAEKDLEIR 568

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKD 407
                 +   + AD K +RQ+++NL+ NAVKFT   G V V V           +  + D
Sbjct: 569 VDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEA-GHVRVAVRAEQSDRRTRVHFDVVD 627

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI++  +  +   F QG  +I     G GLGL I+Q ++A  GG+   RS++ EG  
Sbjct: 628 TGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSRVNEGSC 687

Query: 468 VIAILPNTRVLNFIP 482
               +   +V    P
Sbjct: 688 FSFCIDAGQVDCTSP 702


>gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 933

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + + I ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 888

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           S  +  ++ A      +              ++    +  +D+L A ++      +   +
Sbjct: 90  SRGIRLVAHADNAIALVYRLPRWPDEPLLQQMQRQFAEPTRDELFAVMQAKNQELEVAYE 149

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE    AKS FLA+MSHE+RTP+NAILG S +     + P       +Y+  I RS QH
Sbjct: 150 LAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRLDP----QQFDYVSKIQRSAQH 205

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD S+IEAG+ +L      L  ++     ++  +A+ K IE+  ++D  L +
Sbjct: 206 LLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDT 265

Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEG 415
           + + D   + Q+++N  +NAVKFT   G + V V     + Q +    S++D G G+++ 
Sbjct: 266 LLYGDPLRLGQILINYANNAVKFTEQ-GEILVKVSCLEKQPQEVLLHCSVQDTGIGMSQE 324

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +   +  SF Q   +      G GLGL I++ +    GG+  ++S+   G      
Sbjct: 325 QQQRLFQSFQQADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTFWFT 380


>gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 662

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 138/283 (48%), Gaps = 9/283 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L    ++T  L +     L   A+      EL       D  +K AE   LAK  FL
Sbjct: 128 IGTLCAVDHVTKELNEDQRNALRIVAKHVISQLELGTKNVQLDAQKKIAERAVLAKDSFL 187

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTPLNAI+GF++++    +    N   ++YI  +  +G++LL ++N+ILDLS+
Sbjct: 188 ANMSHEIRTPLNAIIGFTDLLAQTKL----NAVQRDYINSVQIAGENLLLIVNDILDLSK 243

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E+G   +     +L + ++    +L+++  ++              V  DE  + Q+++
Sbjct: 244 MESGNLTIEAVPFNLKNTLKHVYNLLKIKVPKEVEFNLFLDADMPEMVIGDEGRLNQILV 303

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KFT   G V V+V        +     S+KD G GI   ++ T+   F Q   
Sbjct: 304 NLIGNALKFTHE-GEVTVSVKMIEETETHYSLKFSVKDTGIGIPPKKLKTIFERFTQAED 362

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I + ++     +  ++S+  +G E   ++
Sbjct: 363 STTRKFGGTGLGLNIVKQLIELQNAEINVKSEQNKGSEFFFVI 405


>gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 561

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 3/273 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L +        +A+     AEL            + E+ + AKS+FLA+MSHE RTP
Sbjct: 287 ARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTP 346

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILG++ ++     G +   T K  +  I  +G+HLL +INEILD++RIEAGR  L+ 
Sbjct: 347 LNAILGYTNMLLQGVSGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNL 405

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S  +L ++++E +  L        + +   + P L  V +D + ++Q++LNLLSNA+KFT
Sbjct: 406 SDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFT 465

Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G + V   +        IS+KD G GIA+     +   F Q   +   A  G GLGL
Sbjct: 466 HE-GSIQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGL 524

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + +    GG+  ++S L +G      LP  
Sbjct: 525 SICRRLATMLGGRITVQSALGQGSTFTLHLPRR 557


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 5/254 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + +++AEE N  KS FL  +SHELRTPL  +LG   ++      P + 
Sbjct: 313 ITERKAAEFALIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLP-DA 371

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +   DI  SGQHLL LIN++LDLS+IEAG+  + +  +S+  + ++ I  +Q+ A 
Sbjct: 372 EEIADIATDIEDSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAH 431

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           EKN+ I  +ID     V+AD   ++Q++LNLL NA+KFT   G + V +   + +     
Sbjct: 432 EKNLTIETEIDD--IEVFADPIRLKQILLNLLGNAIKFT-ENGFIKVKIKPMAHQ-VCFF 487

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E ++P +  +F Q   +      G GLGL I + ++  H G+  ++S L +
Sbjct: 488 VEDCGCGIDEKDVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLLGK 547

Query: 465 GVEVIAILPNTRVL 478
           G      +P   V+
Sbjct: 548 GSVFSFSIPKNSVV 561


>gi|260903020|ref|ZP_05911415.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
 gi|308108337|gb|EFO45877.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
          Length = 785

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 134/271 (49%), Gaps = 7/271 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+   S  +    +AE    AKS FLA+MSHELRTP+N +LG S++I  ET  P+  
Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE+I  I  SGQHL+ ++N+ILD S++E  + EL E+   L  ++      +Q    
Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQPLID 361

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK+IE+  + D P+ +    D   +RQ++ NL  NAVKFT   G V +     S   Q  
Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNSEDKQLL 420

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA  +   V  SF Q   +      G GLGL I + +    GG   ++S  
Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G + I  LP     +  P   H   Q + 
Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 14/279 (5%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                +   +          Q     L  +  +A+S++ +    A++ N AKS FLA+MSH
Sbjct: 816  LIYAVARDISDRVETEARLQEANRRLEEQTALARSMALQ----ADQANRAKSDFLANMSH 871

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+N ILG + ++    + P      + +   +  S ++LL L+N+ILDLS+IEAGR
Sbjct: 872  EIRTPMNGILGMAALLLDTDLTP----EQRHFGEIVQASAENLLGLLNDILDLSKIEAGR 927

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
              L E    L  +  +    L  +AQ K +E    ++P +  ++  D   +RQV+ NLL 
Sbjct: 928  LALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRGDPGRLRQVLTNLLG 987

Query: 378  NAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NAVKFT   G V V     S          S++D G GI   ++  +   F Q   +   
Sbjct: 988  NAVKFTHR-GEVVVRARRVSESPERVQVRFSVRDTGIGIPADKVDLLFQKFTQADASTTR 1046

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I+++++   GG+  + S+   G E    L
Sbjct: 1047 HYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTL 1085


>gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
 gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
          Length = 1316

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 147/302 (48%), Gaps = 7/302 (2%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            I       +S    +A  LS    I   +++S V +   +A + +L   ++      + 
Sbjct: 625 PIAVSPPWWLSQLAYIAYVLSALALIALLMWRSRVNLAQAEARERELTQRVQERTLDLEL 684

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             + AEE N AKS FLA MSHE+RTPL+ ++G +E++    + P      + +      S
Sbjct: 685 ATREAEEANRAKSEFLAVMSHEIRTPLHGMIGMNELLIKTDITP----QQRRFTKAALNS 740

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ LL+LINEILDL++IEA R E+ E+   LI+++ E   +    AQ+K + I+   +  
Sbjct: 741 GKTLLHLINEILDLAKIEADRMEVEETDFDLIELIDEVCYLQGEPAQKKGLAIYHLPEAG 800

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           ++     D + +RQ++ NLL NA+KFT   G + V V  T      I+++D G GI E  
Sbjct: 801 IANRYRGDSQKIRQIVTNLLGNAIKFTDR-GHITVRVQRTIDDTISIAVQDTGIGIHEEV 859

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEVIAILPNT 475
              +   F Q   +      G GLGL I ++     GG+  I  S    G  V   LP  
Sbjct: 860 RDRIFEKFTQADASTTRKYGGTGLGLTICRNFATLLGGKLDILESGDGTGTLVEVELPLM 919

Query: 476 RV 477
            V
Sbjct: 920 PV 921


>gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
 gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
          Length = 938

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 9/263 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E  K A+E + AKS FLA+MSHE+RTP+N +LG  ++++   +    +E   +Y+  I
Sbjct: 543 LIEAMKAADEASRAKSEFLANMSHEIRTPMNGLLGIIDLLDHTNL----DEEQSQYLEII 598

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG  LL++I +ILD S+IEAG+ +L+ +  +  + + + I +    AQEK+I +   I
Sbjct: 599 KNSGSSLLSIIKDILDYSKIEAGKMDLNPTLGNPAEELEKQIQIFYGLAQEKSITLKTDI 658

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409
             +   ++  D   + QVILNL+ NA+KFT   G+V V++             I +KD+G
Sbjct: 659 GKAAYGLFETDFDRINQVILNLVGNALKFTPQNGQVTVSMDAEQIENELHYLKIQVKDSG 718

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  IP++   F Q   +   + QG GLGL IA+ I+   GG+  I S + EG E  
Sbjct: 719 IGIPEKHIPSLTDPFFQVESSSTRSYQGTGLGLAIAKKIVELMGGELNINSTVGEGSEFS 778

Query: 470 AILPNTRVLNFIPEDNHESTQYK 492
             +   + L    E   +S+  +
Sbjct: 779 FSVLLKKDLKAQEEKVQKSSDER 801


>gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 639

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +IA+    +      ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I    +    
Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  ++Y+  I +SG  LLN+IN+ILD S+IE+GR EL E   SL   + E + M+  +A
Sbjct: 296 DEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILPKA 355

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
            EKNIE+   +   +   V  D   +RQV++NLLSNA+KFT   G V ++V   +  G  
Sbjct: 356 LEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCLNHEGNP 414

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G G+ E ++  +   F Q    +    +G GLGL I + ++   GG    
Sbjct: 415 PLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDIWY 474

Query: 459 RSKL-REGVEVIAI 471
              L   G      
Sbjct: 475 ERNLNGSGSVFAFT 488


>gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 926

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  + + LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 793 E-EVELVFDGHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 905 KGSRFWFTIPGVIVTEEM 922


>gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185]
 gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 933

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + + I ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 2332

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 14/292 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1825 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1884

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   N+   EY+  I      LL LIN
Sbjct: 1885 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTNLNKEQDEYVESIRVCADTLLTLIN 1940

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +   + +D       V  D
Sbjct: 1941 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2000

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +   + D G GI E +   + 
Sbjct: 2001 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2060

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L
Sbjct: 2061 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHL 2112


>gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223]
 gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 933

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + + I ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1051

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 164/338 (48%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205
           +A +I A +   L + V +S   ++V   T  ++     ++ L     +  ++       
Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE       E + AKS FLA+MSH
Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G 
Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  + +EK IE+   I P+    +  D+  +RQVI+N +S
Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKVKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + +T   ++     I  S++D+G GI E +   +   F Q   +    
Sbjct: 521 NAVKFTERGSVELSITTLESNESEAVIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG   + S+   G      L
Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1]
          Length = 935

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLQGNLI 238

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + E I ++   AQ K +E+   I P++   V  D 
Sbjct: 355 DILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDS 414

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   +     +   + D G GI E +   +  
Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQ 474

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 526


>gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195]
 gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 933

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + + I ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 972

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               I     +LI +  +    F L   V    FP+   +   A +    LD  L G L 
Sbjct: 224 HRAAIAAFVIVLIGVQFNLFFTFRLVKHVN---FPITEMVRVVAKIREGKLDARLDGNLI 280

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEEN 246
             L         +  S  +      +          + + ++E+     D  +KRA+E +
Sbjct: 281 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNVELDLAKKRAQEAS 340

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 341 QIKSEFLANMSHELRTPLNGVIGFARQLIKTPLHA----SQLDYIKTIDRSATNLLGIIN 396

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S++EAG+ EL +   SL + V E I ++   AQ K +E+   ID ++   V  D 
Sbjct: 397 DILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHVSGDA 456

Query: 366 KGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G  V   + V  T  R      + D G GI + +   +  
Sbjct: 457 MRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQEYLFQ 516

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G     ILP 
Sbjct: 517 AFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFWFILPL 568


>gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver
           domain [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 655

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  I+  L K             + I + + A+    + +K AE  N AKS F+A+M
Sbjct: 219 QILWIEISNSLVKDRNGSPLYFVVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVANM 278

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLN ++GF+E++    +        KEY+ +   S   LL +IN+ILD+S+IEA
Sbjct: 279 SHEIRTPLNGVIGFNELLMTTNLDS----DQKEYVKNAISSAHGLLGIINDILDISKIEA 334

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+  L+E+  +L  IV++ + +LQ RA+EKNI++  +++P L   +  D   +RQ+++NL
Sbjct: 335 GKLVLNETISNLKHIVKDSLGVLQWRAKEKNIQLDFEVNPKLPEWIVVDATRLRQILINL 394

Query: 376 LSNAVKFTAIGGRV-HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L NAVKFT  G  +  +              SIKD G GI E   P +  SF QG     
Sbjct: 395 LGNAVKFTEKGSVILKIDSEIAENEKIKLNFSIKDTGIGIPESHKPNLFQSFWQGESNST 454

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I +S++   GGQ    S+  +G E    +
Sbjct: 455 RRFGGTGLGLRITKSLLDLMGGQIDFSSEEGKGTEFRFSI 494


>gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
 gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
          Length = 1107

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 6/252 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   ++ +  AEE   AK  F+A+MSHE+RTP+N+I+GFS+++    +     
Sbjct: 515 ITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLNN--- 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  ++ + + LL L+NE+LD +++E G+  +     SL  ++   I    L A+
Sbjct: 572 -EQQKHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLEAK 630

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K++ +   I  S+  + + D   +RQ++ NL+ NA+KFT   G V +TV  T     + 
Sbjct: 631 KKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKFT-EHGSVTITVSTTQNGHLFF 689

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI +  +  +   F Q          G GLG  I++ ++   GG   + S++ 
Sbjct: 690 EVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEVN 749

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 750 KGTCFYFSLPLK 761


>gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
 gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
          Length = 919

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 14/295 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               ++ H  +    I    +E  + + ++EV     D  RK+A++    KS FLA+MSH
Sbjct: 241 MAMAMSKHHQEMQESIDLATSELRETLDQMEVQNIELDLIRKKAQQAAKVKSEFLANMSH 300

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ++GF+  +    M      +  +Y+  I RS  +LL++IN+ILD S+IEAG+
Sbjct: 301 ELRTPLNGVIGFARQLLKTKMTS----SQVDYLETIERSAANLLHIINDILDFSKIEAGK 356

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             L      L D + E + +L   A EK +E+   ID +++  V  D   ++Q++ NL+ 
Sbjct: 357 LMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLIDANVTQSVLGDAMRLQQILTNLIG 416

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G + V +   + +       ISI D G GI++ +   +  +FGQ   +I  
Sbjct: 417 NAIKFTQQ-GDIEVKIQQVADKKGLITLKISISDTGIGISKQQQAQLFCAFGQADSSITR 475

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR----VLNFIPED 484
              G GLGL I Q ++    G+    S   +G      +   +    +L+ +P +
Sbjct: 476 QYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGSTFWFNIKFEKNSHELLSILPTE 530


>gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 490

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 130/275 (47%), Gaps = 8/275 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              + +    +    + R++AEE    KS FLASMSHE+RTP++ I G  +++    +  
Sbjct: 81  QQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASSEL-- 138

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  K Y+     S Q LL+++N+ILD S+IEAG+ ++ E+   +++ +        +
Sbjct: 139 --TEEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAI 196

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399
             QEK + +    D      V  D+   RQ++ NLL NAVKFT  G   V  ++   +  
Sbjct: 197 MCQEKGLALHFHFDLQGFHVVQGDDVRFRQILSNLLGNAVKFTDSGCIEVTTSIQQNADN 256

Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              +  S+KD G GIA+ +  T+   F Q  ++      G GLGL I++ +    GG   
Sbjct: 257 SLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMGGDIK 316

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + S    G      +   +    + +  H S+  K
Sbjct: 317 LESVKGHGSTFSFTIMLEQADEALLKPVHHSSGVK 351


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 11/290 (3%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +A ML    +       +L +   ++     E  D    LE A    ++ R ++E    
Sbjct: 58  LMAAMLGERDARLAEQRTYLERLEQEVQDRTREVRDYAVTLETANKALEQARAQSEIAAR 117

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHE+RTP+N I+G +E++    +        +EY+  +  S + LL L+N+
Sbjct: 118 LKSEFLANMSHEIRTPMNGIIGMTELVLDTHLST----EQREYLDLVKSSAESLLGLLND 173

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           ILD S+IEAG+  L     SL +I+   +  L L+A  K++ +  +I P +  ++  D  
Sbjct: 174 ILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLTWEILPDVLDTLVGDPT 233

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVL 421
            +RQ+++NL+SNA+KFT  GG + V               Y S+ D G GI   +   + 
Sbjct: 234 RLRQIVVNLVSNAIKFTERGG-IAVRAQAIVEADLRQCVLYCSVTDTGIGIPPEKRHVIF 292

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             F Q   +      G GLGL I   ++   GG+  + S+   G      
Sbjct: 293 DPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESEPGLGSTFHFT 342


>gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 763

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   ++++ +     Q +K      +        +T   A+  N +KS FL++MSHELR
Sbjct: 340 HLAVAIYQAQLYA-QVQEQKKTFEQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELR 398

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPL  I+G S  +         L  +  ++Y+  I  SG+HLL +INEIL+ S++EAG+Y
Sbjct: 399 TPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKY 458

Query: 320 ELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            LS    SL    +     L+  A  ++ N+++  +I+P  +  +AD + ++Q++ +LL+
Sbjct: 459 VLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLN 518

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG V + + W  G      ++D G GIA+ +IP +  SF Q   + +    G
Sbjct: 519 NALKFTPEGGTVILRI-WREGNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGG 577

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + ++  HGG   + S L+EG      LP
Sbjct: 578 TGLGLALTKQLVELHGGTIEVESILQEGSIFTVRLP 613


>gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
 gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
          Length = 591

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 6/281 (2%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L     +        ++    + E    I+  + A+      + RAE+ + AKS+FLA+M
Sbjct: 165 LLLEAKVKERTHNLRIREEELRDE----ISVRKDAEKELIAMKLRAEDASKAKSQFLANM 220

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPL AI+GF+E++   +      + Y  Y+  I  S Q+LL +IN ILD+S+IE 
Sbjct: 221 SHEIRTPLGAIMGFNEILLENSKSLELPDYYPLYLNYIDNSLQYLLKVINNILDISKIEE 280

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            +++L    + L    +  +   +  A+EK I    K    ++  V  D   ++QVI+NL
Sbjct: 281 RKFKLKVEDVDLEKFFKNIVYTYKHLAEEKKINFIYKNTELIAKYVKIDPVKLQQVIINL 340

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           L NA KFT +   V +TV  T  +   I ++D G GI +    T+   F Q   +   + 
Sbjct: 341 LDNAFKFTPVNKLVEMTVK-TDDQKLIILVRDEGIGIPKEYQETIFKVFEQVDDSNTRSY 399

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           QG GLGL I++  +   GG   + S + +G      LP   
Sbjct: 400 QGTGLGLSISKKFIELMGGIISLESGINQGSMFSINLPLKE 440


>gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1062

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 155/311 (49%), Gaps = 9/311 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A     I S + L   LA         +T             L    ++ +L+A+ +   
Sbjct: 510 AYIITPIFSGYQLWGLLAVYQNYHPRIWTTAEIRTVTQIGSQLGVAVQQAELLAKTQEQA 569

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + ++ A+  N +KS FLA+MSHELRTPLNAILGF++++             +++I 
Sbjct: 570 RQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTN---QNLAPENRQHIE 626

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I+RSG+HLL LIN+IL++SRIEAGR  L  +   L + ++    + +LRA  KN+ +  
Sbjct: 627 IINRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLHLIF 686

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDN 408
           +    L   + ADEK +RQV++NLL NA+KFT   G V V V      +       ++D 
Sbjct: 687 ERPKGLIRHIKADEKKLRQVLINLLGNAIKFTDE-GSVTVRVSHQNRDASDLLQFEVEDT 745

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA  +   +  +F Q    +  A +G GLGL IAQ  +   G +  +RS L  G   
Sbjct: 746 GLGIAPEDCEGLFEAFAQTETGLN-ASEGSGLGLAIAQQFVKLMGDEITVRSCLNRGSTF 804

Query: 469 IAILPNTRVLN 479
              +P  R  +
Sbjct: 805 SFTIPVQRSED 815


>gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 790

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/293 (37%), Positives = 161/293 (54%), Gaps = 12/293 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL---EVAKSLSDET-------RK 240
           G L +  +  T +  H  +   +     A   DL +     E  K+   E        ++
Sbjct: 478 GGLVSVGTDITLLKRHQERLREQERRLMATIGDLSSSQKKLERQKAELSEANEKYLAEKQ 537

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAE  N AKS FLA+MSHELRTPLNAILGFSE++     GP+ +  Y EY  DIH SG+H
Sbjct: 538 RAEAANKAKSEFLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKYGEYARDIHDSGKH 597

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LLN+IN+ILD+S+IEAG   L    +    ++ E + +  + A++KNI I Q+I   L +
Sbjct: 598 LLNVINDILDMSKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKNIAIEQRIASGL-A 656

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD + ++Q++LN+LSNAVKFT  GGR+ V           + + D G GI +  I  +
Sbjct: 657 MTADRRALKQILLNILSNAVKFTNEGGRISVRAHKI-DGAVRLLVSDTGIGIPKQAISKI 715

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F Q       ++ G GLGL I++S++  HGG   IRS+  +G  V   +P
Sbjct: 716 GQPFEQVQSQYAKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTVVSINVP 768


>gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 845

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 176/380 (46%), Gaps = 37/380 (9%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           + W L+ L+    +T  Y   Y        +     SNF        +F  ++ A++   
Sbjct: 220 ILWFLICLMGYIAFTISYPVAYMF------IPCLVWSNFRFGQVGSTTFILIISAIAV-- 271

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
           I ++H   +     L  +L         +  +N+ IL+   EK ++IA L+  ++   + 
Sbjct: 272 INTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKS 331

Query: 238 -----TRKRAEE---------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++A                  N AKS FLA+MSHE+RTPLNAI+GFS++++  
Sbjct: 332 SAQLAANQKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL 391

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                +    + Y+  I  SG  LL LIN+ILDLS+IEA + EL E  ++L  +V+E   
Sbjct: 392 VRDYKS----RSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQ 447

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGW 395
           +  ++A +KNIE+   +   +   +  DE  +RQ++ NL+ NA+KFT  G  ++ V   +
Sbjct: 448 IFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDY 507

Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                  I   ++D G GI   +   +  +F Q    I     G GLGL I + +    G
Sbjct: 508 LDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLG 567

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G   + I P
Sbjct: 568 GTISLHSESEKGSTFLMIFP 587


>gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155]
 gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 932

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 179 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 235

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 236 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 295

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 296 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 351

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + + I ++   AQ K +E+   I P++   V  D 
Sbjct: 352 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 411

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 412 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 471

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S   +G      LP 
Sbjct: 472 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 523


>gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
 gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
          Length = 930

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 148/279 (53%), Gaps = 21/279 (7%)

Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++  +SN+ + + + +++++        I EL+  ++     R +AE  +  KS FLA+
Sbjct: 658 QWNWVRSNIMVTNYRPDENEIEIIGINYDITELKETEAELILARDKAEMADRLKSAFLAN 717

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLNAI+GFS+++        N E  KEY+  +  + + LL LI +ILDLS+IE
Sbjct: 718 MSHEIRTPLNAIIGFSDLLVE----AENLEERKEYVKIVRNNNELLLQLITDILDLSKIE 773

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG +E S   + +  +  + +  +Q++  E  +E+          + +D   + QVILN 
Sbjct: 774 AGTFEFSCGDVDVNLLCEDIVCCMQMKVHE-EVELLFDSHLPQCHIISDRNRLHQVILNF 832

Query: 376 LSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           ++NA+KFT+ G    + VG+   G    + ++D G GI E +   +   F +      S 
Sbjct: 833 VNNAIKFTSQGS---IRVGYQVKGEELEVYVQDTGVGIDEEQQLHIFERFVKL----NSF 885

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             G GLGL I QSI+   GG+  + S+L +G      LP
Sbjct: 886 VPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924


>gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1507

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 10/278 (3%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            L  +    +   A   D+      AK L  E +++AE  N  KS FLA+MSHE+RTP+N 
Sbjct: 1089 LRDTRGNRIGLLAILRDVSDNKRFAKELL-EAKQKAERANRTKSEFLANMSHEIRTPMNG 1147

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            ILG +++     +     +  +E++  +H+SGQ LL++IN+ILDLS+IEAGR  L +   
Sbjct: 1148 ILGMTQLALNRDL----PDDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPF 1203

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
             L+++V   +  L L A++K +     I P +   V  D+  +RQ++ N++ NA+KFT  
Sbjct: 1204 DLVEMVESTLKPLGLLARDKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKR 1263

Query: 386  GG-RVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G   V V +      G+      IKD G GI+  +I ++   F Q + +      G GLG
Sbjct: 1264 GRVEVKVRLAEIQEPGRASLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGLG 1323

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            L I+++++   GG   + S+L  G     +L   +V  
Sbjct: 1324 LAISKALVEMMGGVIQVESELHRGSTFSFVLTLEKVAE 1361


>gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1037

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 12/280 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + +  K    + +++AE  N AKSRFLA+MSHELRTP N I+G  ++++  T+   
Sbjct: 634 RDITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQLLQTTTL--- 690

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  +EY+    +S Q    L+++ILDLS +E GR  +  S   L + +     +    
Sbjct: 691 -DEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHDIFDAS 749

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A+EK + +       +   V  D   ++Q+++ L+SNA+KFT  G   + +     +  G
Sbjct: 750 AREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVVEIRLDALCAAKGG 809

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++ D G GI E ++  + T F Q   +     QG GLGL I + ++    G   
Sbjct: 810 DVRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNID 869

Query: 458 IRSKLREGVEVIAILPN---TRVLNFIPEDNHESTQYKCY 494
           I S   EG  V  +LP     R     P     + Q + +
Sbjct: 870 IDSLPGEGTTVHVVLPFGLSARDDRETPGKALSTEQSRDF 909


>gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 907

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 16/336 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG--------MLATALS 198
               I+A +   +   ++      ++ + T   +   +L ++ A              + 
Sbjct: 339 FMAEINANTRLSILLCIYALIIATIIGIFTARWVIKPILHLNRAAKDIAKGKWNKTLTIK 398

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +       N      +   + L   +E   +   E + +AE  N AKS FL++MSH
Sbjct: 399 RSDEVGELSESFNQMARQLKESFETLEQRVEARTAEIAEAKDKAEVANQAKSEFLSNMSH 458

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG++++++ E           + +  IH+SG HLL LIN+ILDLS+IEA +
Sbjct: 459 ELRTPLNGILGYAQILKREHNLSF---RQTDGLEIIHKSGIHLLTLINDILDLSKIEARK 515

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            EL    I   + +   + ++++RA EK+I    + + +L   + ADEK +RQV+LNLL 
Sbjct: 516 MELYPDDIHFANFLDSVVGVIKMRALEKDILFKYQTESNLPIGIIADEKRLRQVLLNLLG 575

Query: 378 NAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     V V     +       I D G G+   ++  +   F Q     +  
Sbjct: 576 NAIKFTEQGQVTLGVRVKEYQVNTSTICFDIIDTGVGMNPQQLHKIFLPFEQVGD-TQRR 634

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            +G GLGL I + ++   GG+  + S+L +G +   
Sbjct: 635 SEGTGLGLAITKQLVELMGGELKVTSELGKGSKFWF 670


>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
 gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
          Length = 1319

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ ++   + ++ A+  + AK  FLA+MSHE+RTP+N ILG   +     +    +
Sbjct: 583 LTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL----D 638

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I+ S ++LL +IN+ILD S+IE G+  +     SL ++      ++ L+AQ
Sbjct: 639 PAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQ 698

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400
           EK IE    I+P + + +  D   + QV++NL  NAVKFT  G  V    + +       
Sbjct: 699 EKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIEMLTERDVV 758

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            + S+KD G GI + +I  +  +F Q   +I     G GLGL I++ ++   GGQ  + S
Sbjct: 759 LHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSS 818

Query: 461 KLREGVEVIAIL 472
            L  G      +
Sbjct: 819 TLGAGSTFAFTI 830


>gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1123

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 164/465 (35%), Gaps = 20/465 (4%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                 G  +  K      I  + + ++  V      +V+  A           F +  +
Sbjct: 261 SRRMQRGDTFTIKATSGNSIYAVSLVAVNDVGGKAAGYVISYAPAPLAGLIMREFMVSLV 320

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           +   + AA   L  ++  S     E     +  +   +A GL                 +
Sbjct: 321 VATVMLAAACVLFGRLKRSSTA-LEHERASLKAITDTMADGL--------FVMDNHGLIV 371

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM---SMHVLDISLAGMLA 194
               +A  ++    + +                 + +S   +    S             
Sbjct: 372 LANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVFKAVSGGKPYAGEEYFSH 431

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                       +       L+        I   +  +      +  AE  N+AKS FLA
Sbjct: 432 KDGRVIAMDVASMPLVQDGQLTGSVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLA 491

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N I+G + ++    +          Y   I  S + LL +IN+ILD S++
Sbjct: 492 TMSHEIRTPMNGIIGMTSLLLDTHLSS----EQNYYTNTIRVSAESLLTIINDILDFSKM 547

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVIL 373
           EAG+ E  E+   L  +V   + +L  RA+ K I +   +    S V+  D   +RQV+L
Sbjct: 548 EAGKLEFEETPFLLTPLVEGVVDILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLL 607

Query: 374 NLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NL  NAVKFT  G   + VT+            +I D G GI +     + + F Q   +
Sbjct: 608 NLAGNAVKFTEKGSVAITVTLEPKDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSS 667

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                 G GLGL I Q I+   GG     S   +G       P  
Sbjct: 668 TARKFGGTGLGLVICQRIVEALGGAIGFDSTPGQGSRFWFQFPLR 712


>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
          Length = 1248

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/405 (23%), Positives = 167/405 (41%), Gaps = 26/405 (6%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             +SL + + ++     ++          ++   +   +            YL +     
Sbjct: 520 LLISLVRDITSARQSQADLEESERRFR--ELVESMDDGV---YVASEHRANYLYLSHRTQ 574

Query: 145 LLIALSISALSNFMLPYAVFLSFF-PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L  +S   +          +      ++A            D  L          F   
Sbjct: 575 DLWGVSAEDIQAHPARLKSLVLPEDQHLLAEQEALEDQDQPTDTLLRLQHPDKGLRFLRH 634

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +             D+  E   A       R  AE  + AKS+F+A+MSHE+RTP
Sbjct: 635 RTRARRLPDGQSRIYGLVSDVTDEHGQA-LELQRARDLAEAASQAKSQFMANMSHEIRTP 693

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N ILG +E++    +G   N+  + +   ++RSG+ LL +IN+ILD ++IEAGR EL+ 
Sbjct: 694 MNGILGMTELL----LGTPLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELAT 749

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
               L  +V + + ++  RA EK +E+  +  P L SV   D   +RQ++ NL++NA+KF
Sbjct: 750 CDFVLRTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKF 809

Query: 383 TAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   G + V +    G                   ++D G GI    +P + ++F Q + 
Sbjct: 810 T-EHGEIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANG 868

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     G GLGL I++ ++   GGQ  + S    G E +  +P 
Sbjct: 869 GMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPV 913


>gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217]
 gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217]
          Length = 454

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 160/422 (37%), Gaps = 23/422 (5%)

Query: 58  LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLLVGQIA 116
           + A +  ++    +   +      +   +++L +K +  D +           + +    
Sbjct: 44  VAAILALFYIDPIVILAFYSAVALIELLDMALARKHLGWDGEDPVVGGKILKRITINTGL 103

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA----LSNFMLPYAVFLSFFPVVV 172
             +  +   +      T           L  ++  +     +   +L          + +
Sbjct: 104 SAITISAFIVGTAVQQTSSGHLTPSFLLLCASIFAAMYNSQMIGILLLRLSIYGLAFLFI 163

Query: 173 ALSTQAIMSMHV--LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           A          +          +   L F   I+   + S  + L    E+  LI     
Sbjct: 164 AFLDVFRYFPPLNSPIWLEFFTIIFVLYFICDISAKFYLSYQERL----EQIQLIK---- 215

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                 +  +RA+     KS+FLA++SHELRTPL +I+G  +++    +G +  E  K  
Sbjct: 216 ------QENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEV-PEKLKHV 268

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           IG   ++G  L NLI+++LDL +IEAG        ++  ++V E +      A +  I++
Sbjct: 269 IGIAAKNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKLGIQV 328

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                        D   + QV+ NLLSNA+KF+   G V V V    G    IS+ D G 
Sbjct: 329 TTIHCEEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEAL-GTRIRISVHDEGV 387

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +     V   F Q   +      G GLGL I++ I+  H G     S+L  G     
Sbjct: 388 GIPKDAKDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVSELGVGSTFSI 447

Query: 471 IL 472
             
Sbjct: 448 EF 449


>gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 772

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 150/286 (52%), Gaps = 27/286 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + + E +      ++ R+ AE  N+AKS FL SMSHELRTPLNAI+GFSEV++    GPL
Sbjct: 341 EDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPL 400

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +    EY+ DI  +GQHLL+LIN+ILDLS++EAG+  L   ++ + D +   ++ML+ +
Sbjct: 401 TD-KQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLVMLKEK 459

Query: 343 AQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
                I +      +   +   ADE+ ++Q+I N+LSNAVKFT  GG + + +       
Sbjct: 460 IACHGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMVLDPDP 519

Query: 400 ----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                    ISI D G GI+  ++P +   F Q    I+++  G
Sbjct: 520 IPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIRASTPG 579

Query: 438 VGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIP 482
            GLGLP+++ +   HGG  +  S+   +G     ++P   V    P
Sbjct: 580 TGLGLPLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPLMTVSGKTP 625


>gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1026

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 7/258 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I + +  +     +++ AE    AKS FLA+MSHE+RTP+NA++G +E++  E  
Sbjct: 616 ESIRDITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKD 675

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L +   +E +  I  SG  LL++IN ILDL++IEA   EL    I +   +   + ++
Sbjct: 676 EKLTSA-QRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLV 734

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397
                +K I+   KI+ ++   +  D   + Q+++NLL+NAVKFT   G + V+V  T+ 
Sbjct: 735 SGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQ-GEIAVSVSNTNL 793

Query: 398 ---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G   + ++KD G GI E ++  +  SF Q   +      G GLGL I++ +     G
Sbjct: 794 DDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNG 853

Query: 455 QFLIRSKLREGVEVIAIL 472
           +  + S +  G      +
Sbjct: 854 RMWVESAVGVGSVFHFTI 871


>gi|209525055|ref|ZP_03273599.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494464|gb|EDZ94775.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 573

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 39/379 (10%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDIS 188
           +P    +Y  +   + L+++      L      +   +     +     AI+   +L   
Sbjct: 190 SPAATNLYDLSGEALRLAVNFRDRADLALVELQTGQSIARNIILISLLTAIVLGWLLAKY 249

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILS-------------CQAEKDDLIAELEVAKSLS 235
               +A  +     I   + + +   L                   + LI  +       
Sbjct: 250 TGKAIADPIEKMIDIADQVGEDSDFALRIPLMEDQHTEIGKLTTTLNQLIKRVAQYTEEL 309

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + +  AE  N +KS FLA+MSHELRTPLNAI+G+SE++  E+     ++   + +  I 
Sbjct: 310 QKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPD-LERIQ 368

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +G+HLL++I++ILD+S+IEAG   L     ++  ++ + +       ++ +  +  K  
Sbjct: 369 TAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNHNALKVKTA 428

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------- 398
             L +++AD   +RQV+LNLLSNA KFT   G + + V   +                  
Sbjct: 429 KDLGTMYADLPKVRQVLLNLLSNASKFTNK-GTITLQVQRVTKIPNEWKKDTLNAEKFAS 487

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +     +KD G G+ + ++  +  +F Q   +      G GLGL I+Q +    GG 
Sbjct: 488 AKTQYLVFQVKDTGIGMNKEQVKHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILGGG 547

Query: 456 FLIRSKLREGVEVIAILPN 474
             ++S+   G   +  LP 
Sbjct: 548 IYVKSREGVGSTFVVWLPV 566


>gi|75910333|ref|YP_324629.1| periplasmic sensor hybrid histidine kinase [Anabaena variabilis
           ATCC 29413]
 gi|75704058|gb|ABA23734.1| Periplasmic Sensor Hybrid Histidine Kinase [Anabaena variabilis
           ATCC 29413]
          Length = 922

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIY----KSATLLIALSISALSNFMLP----YA 162
           LV QI          L          L  +     S      L +++     LP      
Sbjct: 310 LVSQILSAALDGRPLLRVCSEQAEWLLIFFWSFINSVVTWYGLQVNSQRKQSLPGWPILV 369

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           + LS   +  +  T  ++   +  +S       ++   T +   L +        Q    
Sbjct: 370 ILLSTSIIFGSSYTAFMIGWWIPVMSPLLTTFLSIIVTTNLYKQL-QLEKANQQLQDYSR 428

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  ++       +  +  A+  N AKS FLASMSHELRTPLN ILG+++++E       
Sbjct: 429 TLEEKVRDRTQELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILER---SEN 485

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              T  E I  IH+ G HLL LIN+ILDLS+IEAG+ EL  +       +   + M ++R
Sbjct: 486 IAPTVLEGINIIHQCGSHLLTLINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRIR 545

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398
           A +K I      DP L   + ADEK +RQ+I+NLL NA+KFT  GG    + V     + 
Sbjct: 546 ALQKGISFHYLPDPHLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEVGANF 605

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G G+   ++  +   F Q         +G GLGL I+  +    GGQ  +
Sbjct: 606 HKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDK-SKQVEGTGLGLAISCKMAELMGGQIQV 664

Query: 459 RSKLREGVEVIAIL 472
            S L  G +    L
Sbjct: 665 DSILGTGSKFWLDL 678


>gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1637

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I      ++   E +  A+  N AKS FLA+MSHELRTPL+AILGF+++++ +     + 
Sbjct: 1233 IETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP----DE 1288

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             T +EY+  I R+G +LL L+ ++LDLSRIEA ++  + S++SL +++ +    +++R Q
Sbjct: 1289 GTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQ 1348

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-Q 401
            +    +   +   L   +  D   +RQ+++NL++NA+KFT  G   V V           
Sbjct: 1349 DYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFL 1408

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + + D+G GIA+ ++ T+   F Q    I +   G GLGL I + +    GG   + S 
Sbjct: 1409 LLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSST 1468

Query: 462  LREGVEVIAILPNTRV 477
              EG E    LP   +
Sbjct: 1469 EGEGSEFTIRLPVDPI 1484


>gi|254420410|ref|ZP_05034134.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186587|gb|EDX81563.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 566

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/450 (22%), Positives = 169/450 (37%), Gaps = 28/450 (6%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
           D   +   + +  R          ++A      T  P    W L+   + A     G +V
Sbjct: 5   DLSRLGGAMVARARQWRTRIGLGAVIALAFFTMTGWPFALAWLLVYSILQALEFW-GFRV 63

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT--IYKSATLLIALSI 151
                      VW    +       L +    + +        +   I   A  ++   I
Sbjct: 64  SRKSEDWTPSTVWAWRAVGFIALNNLVFGAFAVRQAFGGQDLSVIAAILVIAGAIVNGVI 123

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           +   +  L +A  L       A++   +M+ +   ++    +A  L     I        
Sbjct: 124 ACAGSRHLTWASILPHIGCFCAVTASVLMAGYPPWLTAQMGVAGLLFVVLAIAAS----- 178

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                          +L     L +E R  AE  N++KS+FLA+MSHE+RTPLN ++  +
Sbjct: 179 --------------NQLAQKLRLMEEGRLTAESANVSKSQFLANMSHEIRTPLNGVVSMA 224

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++    +   +    +E +  I  S   L  L+++ILD++RIEAG   L        D+
Sbjct: 225 HLLARSPLSAPD----RELVQIIQSSADTLTTLLSDILDMARIEAGEVTLEYVPYHFGDM 280

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           VR    +  LRAQEK + +  ++       +  D   +RQV+ NL+SNAVKFT   G++ 
Sbjct: 281 VRSACALFTLRAQEKGVAVVLELPEDADRFIIGDGNRLRQVLNNLISNAVKFTTR-GQIT 339

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V V         + + D G G        +   F Q    I     G GLGL I++ ++ 
Sbjct: 340 VIVTLPEAGCVRVVVADTGVGFDPQASGDLFARFQQADATITRKFGGSGLGLAISRELVC 399

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              G+    S   EG      LP       
Sbjct: 400 LMKGRIGYDSIPGEGATFWIDLPFEPCEPS 429


>gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
          Length = 821

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
             +        +  +  A      ++    +T ++          +  +   +       
Sbjct: 500 TTTIALRTGRWLKMVERATPDGGLITVGIEVTENVRNEEELKKQKEKLRRAALDLERSEG 559

Query: 233 SLSD------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             S+      E +++AE   LAKS FLA+MSHELRTPLNA++GFSE++  E  GPL + +
Sbjct: 560 HASELSRKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPS 619

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           YKEY  DI  SGQHLL++IN+ILD+++IEAG+  +S   I  ID V   + M++ +A+EK
Sbjct: 620 YKEYAKDILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEK 679

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I++  + + +L  + AD + +RQ++LNLLSNA+KFT   G + V V        Y  + 
Sbjct: 680 AIDLVLEAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTD-IYFGVT 738

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   ++P +   F Q +       +G GLGL + +S    HGG+ L+ S   EG 
Sbjct: 739 DTGIGIPAEDLPRLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGT 798

Query: 467 EVIAILP 473
            V  +LP
Sbjct: 799 TVAFVLP 805


>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 700

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 141/265 (53%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +       E RK+AE  N AKS+F+A MSHE+RTPLNA+LG  E + L  +     
Sbjct: 305 ITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLDS--- 361

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K ++  + +S   LL +IN+ILDLSRIE+G + L  S I++++ ++     L  +A 
Sbjct: 362 -KQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSPQAT 420

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +KN+++  +ID S+   ++ D+  + QV+ NL+ NAVKFT++ G V + V         I
Sbjct: 421 KKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSV-GSVRI-VARKIEETIEI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA+     +   F Q   +I     G GLGL I+Q ++    G+  + S+L 
Sbjct: 479 AVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLESELG 538

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G      +P         E++ +S
Sbjct: 539 TGSCFKISIPIVYPSITSCENDTQS 563


>gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 607

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHELRTP+ +I  ++E +    +   ++ET   ++  I      +  L+ +
Sbjct: 382 MRREFVANVSHELRTPITSIKSYTETLLDGAV--EDHETSNRFLSVIDSEADRMTRLVKD 439

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L LSR++  +       +SL  +V+  +  L++ +Q KN ++   +   +  + AD+  
Sbjct: 440 LLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVINADKDR 499

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV++NL+SN++K+TA  G + V VG       Y+ + D+G GI    +P V   F + 
Sbjct: 500 LEQVVVNLISNSIKYTAEYGEITVYVGKIYND-VYMKVTDSGIGIPGESLPRVFERFYRV 558

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL IA+ I+  HGG   I S++ +G EV+  +P  
Sbjct: 559 DKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIPRA 606


>gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
 gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
          Length = 508

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 145/336 (43%), Gaps = 8/336 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-- 212
                   V      + +  +    +  +  D        T       + Y +   +   
Sbjct: 176 IALTDRITVLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQRLGAGELDYRIDDIDDDG 235

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++       + +  +L  A     + ++ A+E N AKSRFLA++SHELRTPLNAI+G+SE
Sbjct: 236 ELGDLAIAFNTMSDKLRRAIDEEIDAKQSADEANAAKSRFLANVSHELRTPLNAIIGYSE 295

Query: 273 VIELETMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++  E     P++ E Y+  +  I  SG+ LL LI++ILDLS+IE G+  L   A    +
Sbjct: 296 MLHDELDDEAPVDREQYQSDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVREAFHPGE 355

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +   +  L    +     +       L  +  D    RQVI+NLLSNA KFT   G + 
Sbjct: 356 ALTMAVDALAPLLRRNGNVLECDDFSDLPQIHNDAVKFRQVIVNLLSNAAKFTEQ-GVIR 414

Query: 391 VTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           V+  + +   Q  I++ D G G+ E +   V  +F Q      +   G GLGL I +   
Sbjct: 415 VSASFEASSAQLSIAVSDTGIGMTEEQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFC 474

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              GG   ++S   EG      LP       +P   
Sbjct: 475 ELMGGTIAVQSSPGEGSVFTVSLPADP--ESVPAAA 508


>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
 gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
          Length = 782

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 125/252 (49%), Gaps = 11/252 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      R+RAE  N AKS FLA+MSHE+RTP+N ++G +E++   T+    ++  K Y 
Sbjct: 204 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDTTL----SDEQKLYA 259

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA +  L E    L   + E +++LQ  A++K + I 
Sbjct: 260 NTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTARDKGLTIL 319

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISI 405
              D  L +    D   +RQV+ NL  NAVKFT   G V + V             +  I
Sbjct: 320 VDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNE-GHVTLRVTGISNPEEGTCAVHCMI 378

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI   +I  V   F Q         +G GLGL I++ ++    G+  + S   +G
Sbjct: 379 EDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWVESDEGKG 438

Query: 466 VEVIAILPNTRV 477
                 +P   V
Sbjct: 439 SCFGFRIPLPIV 450


>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 940

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 204 TYHLFKSNVKILSCQAEKDDLI------AELEVAKSLSDE--TRKRAEEENLAKSRFLAS 255
              L +  V        +  ++      + LE+A+S+ ++    ++A+  N AKS FLA+
Sbjct: 432 VRRLDRDTVNRAMQFYSRFAMLISSLSWSNLELARSVHEQKVATQQADVANKAKSEFLAN 491

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N I+G  ++++   + P      +EY      S   L  L+++ILDLSRIE
Sbjct: 492 MSHEIRTPINGIMGILQLLQSTELSP----EQQEYTNMGIVSASRLTRLLSDILDLSRIE 547

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374
           AG+ E+ +  + L  +      +  + ++EK+I +    DP L  V   DE  ++Q++ N
Sbjct: 548 AGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISLEFTQDPCLPQVLLGDEARLQQIVFN 607

Query: 375 LLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+ NA+KFT   GR+ V               +++ D G G+ +  +  +   F Q   A
Sbjct: 608 LVGNALKFTQE-GRISVNWHLQQRRGRDARVLLTVSDTGIGMTDDTLDELFKPFAQAENA 666

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                QG GLGL I + ++    G   + S   +G      LP       +PE+    T
Sbjct: 667 FTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQGSTFFVSLPL-----GMPEEPASRT 720


>gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 830

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 29/305 (9%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVA-----------KSLSDETRKRAEEENLAKS 250
            +   L      +   Q+E   L   LE                  E ++ AE  N AKS
Sbjct: 129 RVNARLQNKVEALTKAQSEILALNTALEKRVEERTAELAETNRKLLEAKEAAESANEAKS 188

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+N ILG  E++    +    +    + I  +  S   LLN++N+ILD
Sbjct: 189 LFLATMSHEIRTPMNGILGMLELLSHSQL----SAEQTKMISTVRDSAFSLLNILNDILD 244

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+IEAGR EL    +S+ +I+      +   A ++N+ +   +DP +  ++  DE  +R
Sbjct: 245 FSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLHCYVDPDIPDALVGDEVRLR 304

Query: 370 QVILNLLSNAVKFTAI----GGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVL 421
           Q++ NL SNA KFT       G V +        GQ     IS+KDNG G+ +  +  + 
Sbjct: 305 QILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIRISVKDNGIGMDQVTLDKLF 364

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-----PNTR 476
           + F QG  +      G GLGL I + +    GG   + S+  +G E    L     P  +
Sbjct: 365 SPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVASEPGQGTEFRLNLTLAAAPGAQ 424

Query: 477 VLNFI 481
           V    
Sbjct: 425 VEPPP 429


>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/268 (34%), Positives = 142/268 (52%), Gaps = 9/268 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +       E RK+AE  N AKS+FLA MSHE+RTPLNA+LG  + +    +     
Sbjct: 305 ITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADSGL----R 360

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E++  + +S Q LL +IN+ILDLS+IE+G +EL+   +S+ D +   +  L  +A+
Sbjct: 361 QEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQAR 420

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            KNI +  +ID ++ SV   D+  + Q++ NL+ NA+KFT+  G V V           I
Sbjct: 421 NKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTST-GSVRVLARRVEDN-IEI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA+     +   F Q   +I     G GLGL I++ +++   G+  + S L 
Sbjct: 479 SVIDTGIGIAKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSSLG 538

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G     ILP   V+  +  +  E  QY
Sbjct: 539 IGSCFKVILPI--VIPLMTIEVDEPEQY 564


>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 748

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 132/294 (44%), Gaps = 15/294 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIA----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              LFK+   +    AE+   +     ELE +        K AE  N+AKS FLA+MSHE
Sbjct: 43  AMVLFKNAKDLERKVAERTQSLEKARDELEKSNQELTVAMKAAESANVAKSEFLATMSHE 102

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N ++G   ++E +          ++ +G        LL LIN+ILD S+IEAG+ 
Sbjct: 103 IRTPMNGLVGVLTLLEEDL-----PFEKRKLLGTAQECADDLLVLINDILDFSKIEAGKM 157

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
            L     + +++      +    A +K +EI    DPS +     D   +RQVI NL SN
Sbjct: 158 NLESVEFNALNLAESICELHSSSAHKKGLEITSDSDPSSAFCSIGDPLRLRQVISNLTSN 217

Query: 379 AVKFTAIGGRV---HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A+KFT  G  V    +             I D+G GI +     +  +F Q + +     
Sbjct: 218 AIKFTNQGEIVVTPSIVSKDCEQNYLRFEITDSGIGITKETQEKLFNAFTQANSSTTREF 277

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI--PEDNHE 487
            G GLGL I++ ++   GG   + SK   G      +P+    +    P D  E
Sbjct: 278 GGTGLGLAISKKLIEIMGGDIGVSSKEGTGSTFWFEIPHRPAKDQRCNPADIPE 331


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 12/281 (4%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +   +  L +   + L      D  I +   A+    E ++ AE  + AKS FLA+MS
Sbjct: 570 LLYGLFSAELIRLQQRDLLLTVMVD--ITDRVNAEHALLEAKQAAESASRAKSEFLANMS 627

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +E++    +        ++Y+  I  SG +LL LIN+ILDLS+IEAG
Sbjct: 628 HEIRTPMNGVLGMAELLAFTDLTA----EQEQYLACIKSSGDNLLALINDILDLSKIEAG 683

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + EL  +  SL   + + +         K ++    +   L   V  D+   +Q++LNLL
Sbjct: 684 KIELEYADFSLRKAINDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLL 743

Query: 377 SNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNA+KFT   G V ++              +++ D G GI      T+   F Q   +  
Sbjct: 744 SNAIKFT-DHGSVSISAELIECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTT 802

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               G GLGL I++ +    GG   + S+   G      LP
Sbjct: 803 RRFGGTGLGLAISRQLAELMGGDIGLESEPGSGSRFYLDLP 843


>gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1002

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 150/386 (38%), Gaps = 32/386 (8%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
                 +  L   Q    +   L   +     T +      +   +  L+ + L+     
Sbjct: 398 ERTAALQNTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTANTLNGHYQE 457

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                   P+            H  ++  A +          +   +FK           
Sbjct: 458 -------LPIFGLADLIEHTRSHPGEVFTADVALAKDRIGQAVGTAIFKRTDTQEVAACF 510

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276
              L+     A+   D            K+ F++++SHELRTPL ++LGF+ +    ++ 
Sbjct: 511 GSALLIRDVTAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIQEKLQK 560

Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +    L+ E  K         + +  I    + L +LIN++LD++++EAG+ E     I 
Sbjct: 561 DVFPILSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPID 620

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +++           +   +++  +I+  L  +  D   + QV++NL+SNAVKFT   G
Sbjct: 621 PGELLDWATTSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFT-EFG 679

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   V         IS+ D G GIA  + P V   F Q    +    +G GLGLPI + 
Sbjct: 680 SVTCRVKQDKDG-VCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 738

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+ +HGG+  + S+   G      +P
Sbjct: 739 IVEHHGGRIWVESEPGHGSVFSFHIP 764


>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1637

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I      ++   E +  A+  N AKS FLA+MSHELRTPL+AILGF+++++ +     + 
Sbjct: 1233 IETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP----DE 1288

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             T +EY+  I R+G +LL L+ ++LDLSRIEA ++  + S++SL +++ +    +++R Q
Sbjct: 1289 GTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQ 1348

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-Q 401
            +    +   +   L   +  D   +RQ+++NL++NA+KFT  G   V V           
Sbjct: 1349 DYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFL 1408

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + + D+G GIA+ ++ T+   F Q    I +   G GLGL I + +    GG   + S 
Sbjct: 1409 LLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSST 1468

Query: 462  LREGVEVIAILPNTRV 477
              EG E    LP   +
Sbjct: 1469 EGEGSEFTIRLPVDPI 1484


>gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4]
          Length = 984

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 22/334 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L I++ ++   GG+  + S+L +G      LP +
Sbjct: 659 LAISRKLVQAMGGELQLDSQLGQGSCFWFTLPLS 692


>gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii]
          Length = 905

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 17/314 (5%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             +    L  + A        + +   +    I     +    +  +E+     D  R+ 
Sbjct: 205 PSLRSHELDELAAGINRMAEVMQHAQEEMQNSIDQATEDVRQNLETIEIQNIELDMVRRE 264

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E +  KS FLA+MSHE+RTPLN I+GF+ +++   + P       +Y+  I +S   L
Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNTIQKSADSL 320

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360
           L++INEILD S+IEAG+  L  +  +L +++++ + +L   A  K++E+       +  +
Sbjct: 321 LDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDTPLA 380

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416
           +  D + +RQV+ NL+SNA+KFT   G + V               IS+ D G G+++ +
Sbjct: 381 LNGDPQRLRQVLTNLISNAIKFTNE-GTIAVRAMVEDIGEEFAQLRISVHDTGIGLSQED 439

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E    L    
Sbjct: 440 LNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFWIRL---- 495

Query: 477 VLNFIPEDNHESTQ 490
               +P D+H   +
Sbjct: 496 ---SLPLDDHSEDE 506


>gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
 gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
          Length = 1144

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 180/373 (48%), Gaps = 7/373 (1%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           GL  ++L  +           +Y      + L ISA S       +  +      A  + 
Sbjct: 555 GLAHSVLRNLYRYLPRRFVRGLYSRLGRFVVLVISANSLLAGLLMLIFNQIGASSATESA 614

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSD 236
            +    +    +  + +  +++   + +    +  K  + Q+ K    I   E       
Sbjct: 615 LLEKALITLFIVLFIASGVIAWLFLLAHESRLTAQKESNHQSAKLTREIDAHEQTDRELQ 674

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E +++AE  N AKSR+L  +SHELRTPL +ILG+++++  +     +    K  +  IHR
Sbjct: 675 EAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKEEVASD---QKRGLKIIHR 731

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SGQ+L +LI  +LD+S+IEAGR +L  + ++L +++ + + M +++A +K++ +   +D 
Sbjct: 732 SGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQADKKSLVLNFTLDG 791

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
            L   V  DEK +RQ+++NLLSNA+K+T   G+V   + +   +     ++D GPGI + 
Sbjct: 792 RLPDYVMTDEKRLRQILINLLSNAIKYTDK-GKVDFHIRYR-NQVAEFVVRDTGPGIEKE 849

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  V   F +   +  +   G GLGL I + +    GG   ++S++  G E    L   
Sbjct: 850 NLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKSEIGTGSEFRVSLLLP 909

Query: 476 RVLNFIPEDNHES 488
            +     ED  +S
Sbjct: 910 WLDQSQAEDTSKS 922


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 11/330 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVK 213
            N  +   + LSF  + + +    + +  +    L    A            L      +
Sbjct: 351 VNMNIRTTILLSFAALTITVLLGIVTTNWITKPILQLNSAAKEISQGKWETQLKIYREDE 410

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +       D + ++L+ +    +   K+  E +  K  FLA+ SHELRTPLN I+G  E 
Sbjct: 411 LGELANSFDQMASQLKKSFETLEAQNKQLTELDRLKDEFLANTSHELRTPLNGIIGIGEF 470

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  E    LN+ T    +  I  S + L NL+N+ILD S+I   + EL   AI +  +V 
Sbjct: 471 LLEENTKNLNSITTSN-LAIIVSSARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVE 529

Query: 334 ECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             I + ++   + KN+++   I   L  V ADE  ++Q++ NL++NA+KFT   G+V ++
Sbjct: 530 SVITLNRVLVGKNKNLQLTNAIPTDLPPVLADENRLQQILYNLIANAIKFT-ESGKVEIS 588

Query: 393 VG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                            I + D G GI   ++  +  SF QG  +I     G GLGL + 
Sbjct: 589 ASLYSPKEDQDEATEIIIMVSDTGIGIPPDQLDRIFESFEQGEGSIIRKYGGTGLGLAVT 648

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + ++   GG+  + S++  G      LP +
Sbjct: 649 KELVELQGGRIWVESEVGVGSRFNVTLPIS 678


>gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
 gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
          Length = 905

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 17/314 (5%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             +    L  + A        + +   +    I     +    +  +E+     D  R+ 
Sbjct: 205 PSLRSHELDELAAGINRMAEVMQHAQEEMQNSIDQATEDVRQNLETIEIQNIELDMVRRE 264

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E +  KS FLA+MSHE+RTPLN I+GF+ +++   + P       +Y+  I +S   L
Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNTIQKSADSL 320

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360
           L++INEILD S+IEAG+  L  +  +L +++++ + +L   A  K++E+       +  +
Sbjct: 321 LDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDTPLA 380

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416
           +  D + +RQV+ NL+SNA+KFT   G + V               IS+ D G G+++ +
Sbjct: 381 LNGDPQRLRQVLTNLISNAIKFTNE-GTIAVRAMVEDIGEEFAQLRISVHDTGIGLSQED 439

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E    L    
Sbjct: 440 LNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFWIRL---- 495

Query: 477 VLNFIPEDNHESTQ 490
               +P D+H   +
Sbjct: 496 ---SLPLDDHSEDE 506


>gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 840

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/445 (23%), Positives = 168/445 (37%), Gaps = 33/445 (7%)

Query: 46  FRVSPILPLFVLLVANIG--TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
                    F L ++ IG    +   P     +L     YA   +     +   + +   
Sbjct: 240 VHYVAAALFFQLALSGIGSQLLWGDMPWMQQKNLPLSMGYANFAAAI--FVIKFLDLRGK 297

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL----TIYKSATLLIALSISALSNFML 159
             W    L+     GL   +  +V P   T  +L           L I            
Sbjct: 298 SKWACKSLMAFGVAGLATAVSCVVLPEQITVHFLQGLTFFGCLLILTITFVEVKKGKPSA 357

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSC 217
               F     ++  + T       +    L         +     ++  L K    +   
Sbjct: 358 RIFGFAWLPLLLGTIVTVLYYRGFLPRNLLIEQSQAIGVVMEMVLLSLALAKRIEILQRT 417

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E     A LE A+  +   R        AKS FLA MSHE+RTP+N ++G SE++   
Sbjct: 418 QFEAH---AALEKAEQETRIARHNM----RAKSNFLAMMSHEIRTPMNGVIGISELLSHT 470

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        + Y+  I  SG+ LL L+N+ILD S++EA +  L +    L ++++EC+ 
Sbjct: 471 QLDS----AQQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVD 526

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +L  + Q   +++  +I   L   V  D   +RQ+ILNL  NA+KFT   G V + V + 
Sbjct: 527 ILTPKIQGSAVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRK-GHVTIAVSFQ 585

Query: 397 SGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
               Q            ++ D G G+ E +I  +   F Q  I+      G GLGL I +
Sbjct: 586 DENFQPHQSNDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTARQFGGTGLGLVICK 645

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            +    GG   + S   EG      
Sbjct: 646 DLAELMGGSIGVHSISGEGATFWFT 670


>gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
 gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
          Length = 790

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/285 (37%), Positives = 159/285 (55%), Gaps = 6/285 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259
           +     + N  +      +  L  + +  + L+D   E R RAE  N AKS FLA++SHE
Sbjct: 506 LIDREKELNATVDDLTRSRKTLQLQAKQLEELADKYSEERNRAENANKAKSEFLANISHE 565

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFS+++  E  GPL  E Y +Y  DIH SG +LLN+IN+ILD+S+IEAGR 
Sbjct: 566 LRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCHDIHNSGTYLLNVINDILDMSKIEAGRM 625

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            +    +S  +   +   ++   A+EK+I++   ++  +  V AD + ++Q++LNLL+NA
Sbjct: 626 SIETEDLSAKEAAEDAARIMSTAAREKHIDVTCTVEDGI-QVRADRRALKQILLNLLANA 684

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G V +             I D G GIA+ +I  +   F Q         QG G
Sbjct: 685 VKFTPEHGTVSLKAHQ-EKNRICFEISDTGIGIADKDIARLAQPFVQVENQFTKTHQGSG 743

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPE 483
           LGL IA+S++  HGG+  I S+L EG  V  +LP++       PE
Sbjct: 744 LGLAIARSLIEIHGGKLEISSELGEGTHVRFLLPSSDPSAEVQPE 788


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 8/275 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +D  AE    +    E  K A+  N AKS FLA+MSHE+RTP+N ++G +E+I    +  
Sbjct: 213 EDAFAERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTEL-- 270

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  + Y   I +SG  LL +IN+IL+ S+IEAG+ EL  +  +L   + + + +L  
Sbjct: 271 --DEDQQMYAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSP 328

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399
           RA  K +EI  +  P L   +  D   +RQV+ N++ NA+KFT+ G   + V+       
Sbjct: 329 RATMKGVEITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAKGPKG 388

Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            Q  I + D G GI E  +  + ++F Q   A   + +G GLGL I+  +++  GG+  +
Sbjct: 389 YQLGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTV 448

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +S   +G      LP T   + +P        +K 
Sbjct: 449 KSVAGKGSVFTIRLPLTE-CDAVPSVQEGDFDFKG 482


>gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 773

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 198/459 (43%), Gaps = 7/459 (1%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
                 +   F   +          +   +   +L V  I  W  +     ++ ++    
Sbjct: 322 TTARAAAGRSFYEFLDAPQATERRALFGEVLATLLPVNGIERWGERWLDMVVFPVVDGDG 381

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            A  ++L  + + S  +  +        L+   A  L    + L +P        +  ++
Sbjct: 382 KAMGVTLFTRDITSRREAEDRARAAERHLLE--ATELMSAAMLLFDPQGILVLINSACRA 439

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           A   +   +    +F+   A  ++    V A++                 +      +  
Sbjct: 440 ALPDLEDILHPGLSFIELRAAIVARRLFVQAITESQGGIKGGTPGPAPIEVRGKDGRWLL 499

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I      S   ++         I EL+  +    + ++ AE  N AKS FLA+MSHELRT
Sbjct: 500 IRQSATSSGYTLI-----LGTDITELKRRERALADAKEVAEYANRAKSEFLANMSHELRT 554

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+GFS++   +  G L+N  Y +Y  +I+ SG HLL +I++ILDL++IEAG   L 
Sbjct: 555 PLNAIIGFSDITRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIEAGELGLD 614

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           E  +    +V   I M+  RA  K I +   +   L  +W D   ++QV++NLLSNAVK+
Sbjct: 615 EEEVDAARLVDSAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKY 674

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V VT     G G  IS+ D G G+ E  I   +T+FGQ        + G GLGL
Sbjct: 675 TQEDGAVAVTARLAGGDGLAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGL 734

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           P+ + +   H G   I S+  EG  V  +LP  R+    
Sbjct: 735 PLTRKLTEAHQGCLTIASRPGEGTTVTILLPAHRLRAAS 773


>gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1739

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 22/287 (7%)

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             +  V      E+ +RA E + +KS FLA+MSHE+RTP+ AILG++E+++      + + 
Sbjct: 1340 TQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDT 1395

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
                ++  I R+G +LL++IN+ILDLS+IEAG+ ++         ++ +   ++++RA+E
Sbjct: 1396 EGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKE 1455

Query: 346  KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
              +E+  +    + + + +D K ++QV++NL+ NA+KFT   G V + V   S      I
Sbjct: 1456 AGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPE-GNVRLVVRMDSDPIRLCI 1514

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +   F QG  ++     G GLGL I++ +    GG    +S++ 
Sbjct: 1515 DVIDTGIGITLEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVG 1574

Query: 464  EGVEVIAIL---------------PNTRVLNFIPEDNHESTQYKCYA 495
             G      +               P +++++ +   +    +  CYA
Sbjct: 1575 VGSTFTLSVFPGDLTGVALVDHSQPVSKLVDELENSSTTPIKLNCYA 1621


>gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1002

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 152/386 (39%), Gaps = 32/386 (8%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
                 +  L   Q    +   L   +     T +      +   +  L+ + L+     
Sbjct: 398 ERTAALQNTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTATTLNGHYQE 457

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                   P+            H  ++  A +          +   +FK      +    
Sbjct: 458 -------LPIFGLADLIERTRSHPGEVFAADVALAKDRIGQAVGTAIFKRTDTKEAAACF 510

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276
              L+     A+   D            K+ F++++SHELRTPL ++LGF+ +    ++ 
Sbjct: 511 GSALLIRDVTAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIQEKLQT 560

Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +    L+ E  K         + +  I    + L +LIN++LD++++EAG+ E     I+
Sbjct: 561 DVFPVLSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIN 620

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +++           +   +++  +I+  L  +  D   + QV++NL+SNAVKFT   G
Sbjct: 621 PGELLDWAANSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFT-EFG 679

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   V         IS+ D G GIA  + P V   F Q    +    +G GLGLPI + 
Sbjct: 680 SVTCRVKQDKDG-VCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 738

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+ +HGG+  + S+   G      +P
Sbjct: 739 IVEHHGGRIWVESEPGHGSVFSFQIP 764


>gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 845

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 177/380 (46%), Gaps = 37/380 (9%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           + W L+ L+    +T  Y   Y        +     SNF        +F  ++ A++   
Sbjct: 220 ILWFLICLMGYIAFTISYPVAYMF------IPCLVWSNFRFGQVGSTTFILIISAIAV-- 271

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237
           I ++H   +     L  +L         +  +N+ IL+   EK ++IA L+  ++   + 
Sbjct: 272 INTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKS 331

Query: 238 -----TRKRAEEE---------------NLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  ++A  E               N AKS FLA+MSHE+RTPLNAI+GFS++++  
Sbjct: 332 SAQLAANQKALAEQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL 391

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                +    + Y+  I  SG  LL LIN+ILDLS+IEA + EL E  ++L  +V+E   
Sbjct: 392 VRDYKS----RSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQ 447

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGW 395
           +  ++A +KNIE+   +   +   +  DE  +RQ++ NL+ NA+KFT  G  ++ V   +
Sbjct: 448 IFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDY 507

Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                  I   ++D G GI   +   +  +F Q    I     G GLGL I + +    G
Sbjct: 508 LDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLG 567

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G   + I P
Sbjct: 568 GTISLHSESEKGSTFLMIFP 587


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 161/416 (38%), Gaps = 22/416 (5%)

Query: 64  TWFTQNPIFPMWSLIT---LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
             F +      W++        +  +  L                W    L+    + + 
Sbjct: 257 FVFNELAPILSWNVCLRIEYFTFYLSPYLFFTFFRGF-YPDYYPKWMHRSLLFPTLVFIS 315

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           + L    +       Y  I     +L+ L     + +    + FL    +        + 
Sbjct: 316 FLLFLPTQIYPELNSYYQIVFLFGILMILQGVFRAAYHRKESGFLFLVGISTVAIAAFVD 375

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
            ++   I  +        F   +   L                L      A S  +   K
Sbjct: 376 LLNANQIFYSVEAIPIGIFVFILVQSLT---------------LSRRFSRAFSEVETLSK 420

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R    +  K  FLA+ SHEL+TPLN I+G +E +     G L N+  ++ +G I  SG+ 
Sbjct: 421 RLLALDKLKDEFLANTSHELKTPLNGIIGIAESMFDGIGGKL-NQEQRQNLGMIVSSGKR 479

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +L+++ILD S+++    +L   AI L  I    +++ +     KN+ +   +      
Sbjct: 480 LSSLVDDILDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPIDFPP 539

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  DE  ++Q++ N++ NA+KFT   GR+ V+      +   ISI+D G GI + +   +
Sbjct: 540 ILGDEARLQQILFNIIGNAIKFTEK-GRIDVSAEIIE-KMAVISIRDTGIGIPKDKFGDI 597

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             SF Q   +      G GLGL I++ ++  HGG   + S   EG      LP  R
Sbjct: 598 FRSFEQVDASTTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLPLAR 653


>gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 573

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 24/305 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  +   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  ++++  T+    +E   + +  +  S + LL +I++ILDLS+IE+GR++L+E 
Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
            ++L D V   I   +  A++K+++        +    W D   + Q++ NL+ NA+KFT
Sbjct: 287 WVNLRDTVTFVISQQKQIAKKKSLQFKLNCMVTTDKQFWIDSTRLSQILFNLIGNAIKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V V+V         ISI D G GI++ +   + T+F QG  +I     G GLGL 
Sbjct: 347 DE-GEVKVSVS-EQDTELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486
           I + ++    G+ +++S    G      +P                  T+ ++ +  ++ 
Sbjct: 405 ITKHLVEMMRGKIIVKSDEHVGSTFTIKIPVLTRCNQNRPVKIENNQPTKAMDLLVVEDT 464

Query: 487 ESTQY 491
           ES Q+
Sbjct: 465 ESNQF 469


>gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
 gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
          Length = 1630

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/291 (36%), Positives = 158/291 (54%), Gaps = 8/291 (2%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +     +IL  QA   D I E + A+    E ++ AE  N AKS FLA+MSHELRTPL
Sbjct: 1320 RAITDDAGRILEIQAVGRD-ITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPL 1378

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ILG+++++          E Y+E IG I RSG +LL LIN+ILDLS+IEAG+ EL  +
Sbjct: 1379 NGILGYAQIMGR---DSHLCENYREGIGIIERSGNYLLTLINDILDLSKIEAGKIELYPT 1435

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
                   ++    + Q+RA++K+I    +   SL  +V ADEK +RQ+++NLL NAVKFT
Sbjct: 1436 DFYFNQFIQAITEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFT 1495

Query: 384  AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GG + + VG    +     ++D G GIA  ++  + + F Q         +G GLGL 
Sbjct: 1496 KQGG-IVLKVGLEKEK-IRFQVEDTGIGIATEDLDNIFSPFLQVGNP-NYRAEGTGLGLS 1552

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
            I Q ++   GG+  + S L +G     +L    V   + ++  E++    Y
Sbjct: 1553 ITQKLVDMMGGELHVESVLGQGSRFWMVLDLPEVSGMVHKEPSETSIIIGY 1603


>gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 485

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 24/327 (7%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           + + L+ +   ++ VL +      +        +     K    + S QA     +   +
Sbjct: 143 LSIPLAAKEFGALGVLHLRTEKGASIPQEVMDSLEKDCQKLADAVFSAQAVGKLTVHYKK 202

Query: 230 VAKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           + +   +++      R   E    AKS FL+S+SHELRTPLNAILGFS+V++ E  G LN
Sbjct: 203 LQEREEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLN 262

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               K+Y+ DI  SG+HLL+LIN+ILDLSR+E+G  +L    + +  I+   + +++ +A
Sbjct: 263 T-KQKQYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKA 321

Query: 344 QEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
            +  IEI   +   +   ++ AD   ++Q++ NLLSNA KFT   G + V          
Sbjct: 322 FKHGIEITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVD 381

Query: 399 -----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          + ++D+G GI   +   V   F Q S  +     G GLGLP+A+ 
Sbjct: 382 GGGSQDLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKR 441

Query: 448 IMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  HGG+  + S+   +G   +  LP
Sbjct: 442 LVELHGGRIWVESEGRHQGSCFVFTLP 468


>gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1022

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 196/473 (41%), Gaps = 28/473 (5%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
           I  + +S  R+  ++ L V+                   +            G       
Sbjct: 288 IVQYGQSSSRLYMLIMLLVIGAFAAVMILLLERNVLSRIIALSLQAGRIGRTGDVQARLA 347

Query: 98  I----KIGEVYVWRIWLL--VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +    ++ ++      +L  + Q A  L  +     +    +PE + ++    ++     
Sbjct: 348 VIGNDEVAQLGRAINAMLDDIAQAARRLAESEARYRQLVEISPEAIIVHDGKRIIYTNQA 407

Query: 152 SALS-----NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
            A          L  A    F P  + L T   +  +  D+++A     +L         
Sbjct: 408 GARLVGHTDPSQLIGADATPFLPPALHLETAEGVMRYERDLTIADGTGISLELVAAPFLA 467

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             K   +I++        I   +  +    + ++ AEE N  KSRFLA+MSHELRTPL  
Sbjct: 468 EGKPAWQIVA------HNITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTT 521

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G++++I +       ++   + I  +  +G+HLL +IN++LDLS+IEAGR E+     
Sbjct: 522 IIGYADLITISVHSGEFDQVASD-IARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERF 580

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+  +  E I  +++ AQ++N ++   IDP++  + +D+  +RQ++ NL+ NA KFT   
Sbjct: 581 SVRALAEEVIASMRVFAQKRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFT-ED 639

Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G V + +  T            +I D G G+   +I  +   F Q   +      G GLG
Sbjct: 640 GAVTLDIARTVSDHDHAALLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLG 699

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHESTQ 490
           L + + +    GG+  + S+   G   +  LP    +       P D   ++ 
Sbjct: 700 LALCRRLTHLLGGKITVTSQPGVGTTFVVTLPEHLASATASEPAPVDAAPASD 752


>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1559

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 10/270 (3%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            HL +     +     +  ++      +   +  R +AE  +  KS FLA+MSHE+RTP+N
Sbjct: 853  HLLRQIADQVGIALAQAQMLYAETQQRRELEVARHQAELASKTKSAFLANMSHEIRTPMN 912

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            A+LG + ++    +    N   +++I  I  SG  LL+LINEILDLS++EAG   L    
Sbjct: 913  AVLGMTGLMLETPL----NSEQQDFIETIRISGDALLSLINEILDLSKLEAGEMALETLD 968

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
              L   + E + +L   A  K +EI   I P++ + +  D   +RQ+++NL+SNA+KFT 
Sbjct: 969  FDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFT- 1027

Query: 385  IGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G V V     S        Y +I D G GI   +   + T F Q   +      G GL
Sbjct: 1028 SNGEVVVRAELRSLSSTTATIYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGL 1087

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GL I + +++  GG+  + S+L +G +   
Sbjct: 1088 GLAICKQLVSLMGGEIGVESRLGKGSKFWF 1117


>gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 1138

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 154/364 (42%), Gaps = 8/364 (2%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
             TL +                 A  L+A+    +    +   +      +   L     
Sbjct: 148 AITLFSRTPELRGRVLATIWTTLAGALVAVVAGLIVALRMARKISAPIVAL-AGLVKHVH 206

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +                   + I   L     +     A+ + L +E+          R
Sbjct: 207 DTRDFSTRVDIKAEGEVADLVSGIDTMLSGIRERDARIAAQVEGLESEVAARTGELVVAR 266

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE+ N AKS FLA MSHE+RTPLN IL  S+++    +     +  + Y   I +SG+
Sbjct: 267 DAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL----PQRQQRYADVISKSGK 322

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +IN+ILD S++EAG+ +L    + L D   +   +   +A  K +++   +DP L 
Sbjct: 323 SLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVFVDPRLP 382

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK--DNGPGIAEGEI 417
            V  D   +RQVI NL++NA+KFT +GG V + +       + I +   D GPGI   ++
Sbjct: 383 QVLGDPTRLRQVIGNLVNNAIKFTDLGG-VLIAIDRDPEDPRRIRVAVHDTGPGIPADKL 441

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           PT+  +F Q   +      G GLGL I   ++ + GG + + S + EG       P   V
Sbjct: 442 PTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGSTFAFSAPLHPV 501

Query: 478 LNFI 481
            +  
Sbjct: 502 ADPA 505


>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 913

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  L+I + I+ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 172 VFVATLLLVICMCIALLFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     + +    N T  +Y+  I RS  +LL +IN
Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLNATQSDYLQTIERSANNLLTIIN 341

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EAG+  L      L + + E  ++L   A EK IE+   I   +   V  D 
Sbjct: 342 DVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHVIGDP 401

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422
             ++QV+ NLL NA+KFT  G   + V +   +     + +   D G GI+E +   +  
Sbjct: 402 MRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHDTGIGISERQQSQLFQ 461

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+  +G      +
Sbjct: 462 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHI 511


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 128/271 (47%), Gaps = 20/271 (7%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      +LE A + ++E   +AE  N AKS FLA+MSHE+RTP+N  +G + ++ 
Sbjct: 488 QAEEELLQANEQLENATARANELAVQAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLL 547

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +     E  ++Y G +  SG+ LL LIN+ILD S+IEAG+ E+      L  ++ + 
Sbjct: 548 DTEL----TEEQRQYAGIVKSSGESLLVLINDILDFSKIEAGKLEIETLDFDLQSLLDDF 603

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                 +  +K +E+    +P +   +  D   +RQ++ NL+ NA+KFT   G V + V 
Sbjct: 604 AATTAFKTHDKGLELLCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEK-GEVAIRVK 662

Query: 395 WTSGRGQ--------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                 Q                S++D G GI   +I  +   F Q   +      G GL
Sbjct: 663 TVGEACQTGQTSLNDDASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKYGGTGL 722

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL I++ +    GG+  + S   +G E    
Sbjct: 723 GLAISKHLAEMMGGEIGVESVEGQGSEFWFT 753


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 24/251 (9%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E      +E +  AE  + AKS FLA+MSHE+RTP+NA++G + ++    + P      +
Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQR 767

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  I  SG  LL +IN+ILD S+IE+G+ EL +    L + + EC+ +L  RA EK +
Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGL 827

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399
           E+   IDPS    +  D   +RQV++NL+SNA+KFT+  G V + V  T           
Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVILAVKATHPDAKKDVKKS 886

Query: 400 ----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                          ++D G GI    I  +  +F Q   +      G GLGL I+Q + 
Sbjct: 887 DDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLS 946

Query: 450 ANHGGQFLIRS 460
               G+  + S
Sbjct: 947 QLMNGKMWVAS 957


>gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8]
 gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 922

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 32/327 (9%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +L   +    ++ ++   S       ++E       L  ++      +  AE  
Sbjct: 515 TVVRRIILIAIVVVLIFLYWNRKLSLEVDERIRSEN-----ALRRSEDELRAAKLEAERL 569

Query: 246 NLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                     KS FLA+MSHE+RTP+NA++G+S+++       + +   + Y+  I    
Sbjct: 570 AREAEAASRAKSEFLANMSHEIRTPMNAVIGYSDLL----YNSVTDPQQRNYLNAIRAGS 625

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LIN+ILDLSRIEAG+  L    +S+  ++ +   +  LRA E+ I +   +   +
Sbjct: 626 RSLLMLINDILDLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDLRATEQGITLEVSVGSGM 685

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------------QYISI 405
             ++  DE  +RQV+ NL+ NA+KFT  GG V V                       +++
Sbjct: 686 PSAMMLDETRLRQVLFNLVGNAIKFTHEGG-VTVRAVAKPLGEPADADSEVCYYRLVVTV 744

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GIA  +   +  +F Q          G GLGL I++ ++   GG+  ++S+   G
Sbjct: 745 ADTGIGIAPDQQERIFEAFEQQEGQSSRRYGGTGLGLAISRKLVEMMGGRLTVKSEANVG 804

Query: 466 VEVIAILPN--TRVLNFIPEDNHESTQ 490
                +LP     V     +   E ++
Sbjct: 805 STFKVVLPRVEATVEQADDDGAPEESE 831


>gi|328470858|gb|EGF41769.1| putative sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 785

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/271 (33%), Positives = 133/271 (49%), Gaps = 7/271 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+   S  +    +AE    AKS FLA+MSHELRTP+N +LG S++I  ET  P+  
Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE+I  I  SGQHL+ ++N+ILD S++E  + EL E+   L  ++      +Q    
Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQPLID 361

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK+IE+  + D P+ +    D   +RQ++ NL  NAVKFT   G V +         Q  
Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNGEDKQLL 420

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA  +   V  SF Q   +      G GLGL I + +    GG   ++S  
Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G + I  LP     +  P   H   Q + 
Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511


>gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 600

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +     G  + ET + ++  I+  
Sbjct: 361 AIRRLEN---MRSEFVANVSHELKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDE 415

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  LI +IL+LS+IE+ R  L  S + +   +   +  L   A +K I +   I   
Sbjct: 416 SERLNRLIGDILELSKIESKRSTLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDE 475

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIA 413
           L  + ADE  ++Q+ LNLLSN + +T  GG+V + V              ++ D G GI 
Sbjct: 476 L-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIP 534

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++P +   F +          G GLGL I + ++  H G   + S+L  G      LP
Sbjct: 535 KKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594

Query: 474 N 474
            
Sbjct: 595 L 595


>gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    + +++A   N AKS FLA+MSHE+RTP+N I+G  ++++  T     +   +E
Sbjct: 675 QTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQLMQDTT----QDREQQE 730

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+     S Q L  L+++ILDLSR+EAG+  + E   S  D+      + ++ A+++ + 
Sbjct: 731 YVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAGSVAELFKVTAKDRGVS 790

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYI 403
           +   +DP L   +  D   +RQ++ NL+ NAVK++   G V++       G         
Sbjct: 791 LECILDPGLPGEIIGDPARVRQILFNLVGNAVKYS-EHGNVNLHMTPVPAGRNEDIRVLF 849

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI E  I T+   F Q         QG GLGL I + +    GG   I S   
Sbjct: 850 IVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRRLTQLMGGNISIDSTEG 909

Query: 464 EGVEVIAILPNT-RVLNFIPEDNHE 487
           EG  V   LP        +PE   +
Sbjct: 910 EGTAVYVALPFKLPDKASLPEYEQQ 934


>gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 651

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 154/358 (43%), Gaps = 25/358 (6%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           + +        AL ++ L    L   +     P+         +       SL  +    
Sbjct: 167 ILLKAGLLAAFALILTFLVARRLAQRL---SAPISTMGQAVEAIQSGDYKTSLPILDDGE 223

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +        +L     +             E E A       R+ AE+ N AKS FLA M
Sbjct: 224 IGDLARHINNLASGLDRASR----------EQEQAIGQLISAREEAEQANRAKSDFLAMM 273

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTP+N +LG  +++E             EY      S +HLL +IN+ILD SRIE 
Sbjct: 274 SHELRTPMNGVLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIER 329

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILN 374
           G  EL     +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++N
Sbjct: 330 GALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLEHLEVRGDPTRIRQILVN 389

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           LL NA+KFT   G +H+++ W +   + +    ++ D+G GI+   +  +  +F Q   +
Sbjct: 390 LLGNALKFTEE-GSIHLSLEWQALDHEVLWLTCAVHDSGIGISPERLEHMFDAFQQADSS 448

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           I     G GLGL IA+++    GG    +SK   G      +P       +P     S
Sbjct: 449 ISRRYGGTGLGLAIARTLAERMGGTLQAQSKEGCGSTFTLEIPL-PFQQSLPHPQQAS 505


>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1033

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 8/284 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
               +    E+   I + +  +      +++AE  + AKS FLA+MSHE+RTP+  I+G 
Sbjct: 485 EQGEILYIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGA 544

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E++   T    ++E  +  +     S + L  +IN+ILDLS++EAG+ E+         
Sbjct: 545 LEMVSART----DDEESRRLMKMTLESARSLQQIINDILDLSKVEAGKLEIEHQEFDPQS 600

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           + +  + +  ++A EKNIE+     P +   +  D+  + QV+ NL+SNAVKFT+ G  +
Sbjct: 601 LFKRVMDLYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVI 660

Query: 390 -HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             V     +         ++D G GI E  +P +  SF Q         QG GLGL I+ 
Sbjct: 661 LRVRPVQAASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISN 720

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            ++   GG    +S    G      LP          +    TQ
Sbjct: 721 RLVQMMGGDIQAQSIPGAGSIFSFSLPFAIPAEHTAGEKRSDTQ 764


>gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 2333

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1885

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G + ++   EY+  I      LL LIN
Sbjct: 1886 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQDEYVESIRVCADTLLTLIN 1941

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +   + +D       V  D
Sbjct: 1942 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2001

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +   + D G GI E +   + 
Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2061

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +    
Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKAKES 2121

Query: 481  I 481
            +
Sbjct: 2122 L 2122


>gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 636

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 163/343 (47%), Gaps = 20/343 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDISLAGMLAT 195
           +        ++++     +     ++   P+     V+    +  +    DI        
Sbjct: 250 FAFLVATGIITVALSMAALYLIVKYVIVKPLNHLREVSEQVTSGNTSVRADIRTNDEFED 309

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             + F  +  HL  +  ++     + D+ + EL        E        N  KS FLA+
Sbjct: 310 LAASFNKMLRHLIDAQNQLHLANDDLDNKVDELARVNVQLYE-------MNRVKSDFLAN 362

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLN+ILGFS+V+         N+  K Y+ +I +SG+ LL++IN+ILDL++IE
Sbjct: 363 MSHELRTPLNSILGFSDVLSD---IDSLNDKQKRYVQNIQKSGRLLLDMINDILDLAKIE 419

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           +GR E+  S  S+  +VR    M++   +EKN+++   +      ++ D+  ++Q++ NL
Sbjct: 420 SGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDVHDGGEPMFQDQTKLQQILTNL 479

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIA 430
           LSNA+KFT  GGR+   V   +     ++++D G GIAE +   +   F QG     + +
Sbjct: 480 LSNAIKFTPEGGRITCRVSREAD-MMKLAVEDTGVGIAEEDREIIFEKFRQGAVSPRNDS 538

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +     G GLGL I   I     G   + S+L  G      +P
Sbjct: 539 LTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTIRIP 581


>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 1084

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + +  +      ++ AE  + AKS FLA+MSHE+RTP+N I+G + +     +      
Sbjct: 544 TQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQTELTS---- 599

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++Y+  I  S   LL ++N+ILD S+IEAG+ E+  +   L  ++ E   +  L A E
Sbjct: 600 RQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAE 659

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K +E+  +I P +  V   D   + Q++LNL+ NA+KFT   G V V+V      G    
Sbjct: 660 KGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFT-QSGHVLVSVTQERHEGSKTR 718

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G G+   +I  +  SF Q   +      G GLGL I + ++   GG+  +RS
Sbjct: 719 LRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRS 778

Query: 461 KLREGVEVIAI 471
               G + I  
Sbjct: 779 TPGHGSDFIFT 789


>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
 gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
          Length = 632

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 159/326 (48%), Gaps = 8/326 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +    +          + V+L     +   +  +  A    ++ ++  ++         +
Sbjct: 311 IKTHTILIGFLSIILALSVSLVLSEAIIGPIKKLKYAAEKISSGNYNIHVDVSSDDEIGE 370

Query: 214 ILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +     +  + I     EL+       E+ ++ +E +  KS  ++ +SHELRTPL +I G
Sbjct: 371 LAKAFNKMAEDIRKSHEELKRHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKG 430

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + E++    MG LN+   +  +   + +   L  LI+++LDLS+IE+G  +     + + 
Sbjct: 431 YVELVLDGLMGELNS-NQRRCLEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIK 489

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           D+V + +  L  + +EKNIEI  +I+ +L +   D+  + QV++NL+ NA+KF+ + G +
Sbjct: 490 DMVVDVLNSLGPQIKEKNIEIKCEIEENL-TAKVDKDRITQVLINLIENAIKFSPVKGVI 548

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +          +I IKD GPGI + ++  +   F Q +   K  + G GLGL I +SI+
Sbjct: 549 EIHAFR-DNNYAHIIIKDYGPGIPKKDLDKIFDKFYQVNFP-KIKKDGAGLGLAICKSII 606

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475
             HGG+  + S+L +G     +LP  
Sbjct: 607 EAHGGKIWVESELGKGTSFHVLLPIE 632


>gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 631

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A  +    +FF      +  S+V +L   A     I  L  A S   E  ++AE+ N  K
Sbjct: 353 AVYIDKPQTFFQQHYVKIIASSVFLLLLIAAIVYYIRILRKAYSRLSEAVEKAEQANQLK 412

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNAI+GFS ++        +    +EY   I  +   LL LIN+IL
Sbjct: 413 SAFLANMSHEIRTPLNAIVGFSNML----PHTEDPVEMREYADIIETNTDLLLQLINDIL 468

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IEAG ++   S+I +   + E    ++LR +  ++ +           + D+  + 
Sbjct: 469 DLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPGCLFYIDKNRLI 528

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ N ++NA+KFT   G + +    T     Y  + D G G++  +   V   F +   
Sbjct: 529 QLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYVSDTGCGMSNEQCEHVFERFVK--- 584

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                 QG GLGL I ++I+   GG+  + S+  +G      LP  +
Sbjct: 585 -YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630


>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 838

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 17/337 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           ++ L       +  L+  P+ +         +    +  A +LA    +          +
Sbjct: 12  LAVLGTGSAIGSAILALPPMALP---APWPWLAPACMIAAAILAATAGWRAQQQIRELDA 68

Query: 211 NVKILSC-QAEKDDL---IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            +      ++E++ L   +   E  +    + ++ AE   LAK  FLA+MSHE+RTPLN 
Sbjct: 69  ALTRADLAESERNALQRDVHLRERLERELVQAKQAAEAAVLAKGEFLATMSHEIRTPLNG 128

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+   E+I    +        +E +   + S   LL ++++ILD S++EA R EL  +A 
Sbjct: 129 IIPMLELIAHSPLDL----DQREMLRAANTSSLQLLRIVDDILDYSKLEANRLELETTAF 184

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L +++ + + ++Q  A+ K + +  ++D ++   V  D   +RQV+ NLL NA+KFTA 
Sbjct: 185 NLRELLDDVLQLMQRAAEAKGLRMALQLDRAVRLPVRGDPVRLRQVLSNLLGNAIKFTAR 244

Query: 386 GGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG + + V               ++D G GI+      +  +F Q   +      G GLG
Sbjct: 245 GG-IDLHVRRLGESPAQHVLRFEVRDTGIGISAERQERLFQAFTQADASTTRLYGGTGLG 303

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           L I + I+   GG+  + SKL  G      +P  +V+
Sbjct: 304 LAICKRIVELMGGRIGLESKLDHGAIFWFEIPLLKVI 340


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 11/323 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                 S   L+  ++            +     + +   +         I   + A+  
Sbjct: 198 IATVFDSGEPLEEEMSLYSGDNEGLIHNVRMVPERDSSGNIVTVLAISRDITLQKQAQQA 257

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               +K AE  N +K+ FLA+MSHE+RTPLN I G  +++    +    N   +++I   
Sbjct: 258 LLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLSTPL----NSEQQKFIEMG 313

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           H++ + +  L+++ILDLSR+EAGR ++S+   +L D+      +L ++++EK I +   +
Sbjct: 314 HQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIKSREKGIPLTFNL 373

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDN 408
            PSL  ++  D   +RQ++ NL+ NA+KFT   G+V + +               ++ D 
Sbjct: 374 SPSLPDTLMGDSTMVRQILFNLVGNALKFT-EHGQVTLDIHPLPQSHQDQLQVLFTVSDT 432

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGI + +   +   F   + ++    +G GLGL +   +    GG   + S   +G  +
Sbjct: 433 GPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTISVDSAEGQGTSI 492

Query: 469 IAILPNTRVLNFIPEDNHESTQY 491
              LP   V    P +N    +Y
Sbjct: 493 YVTLPFETVPETRPAENERVNEY 515


>gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 635

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE++ L      
Sbjct: 256 HDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIMALT----E 311

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N E   EY+  I ++   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 312 NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLK 371

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             + N+++             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 372 -MKLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTET-GSITLGLKQ-EGDWLK 428

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI E ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 429 LFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVSSEL 484

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
            +G      LP       IP +  E +
Sbjct: 485 GQGSTFALYLP----YQEIPVEVAERS 507


>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 764

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 164/395 (41%), Gaps = 11/395 (2%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                   +  +R  ++V     G+      L         ++      T L+   I+ +
Sbjct: 83  REQAPNTTLTHFRTPIMVQGSFQGILVGAWDLAPDLRAIDTHVNHILLLTSLLFGLITLM 142

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
             FM+          +   L  Q        +   A      L            S+++ 
Sbjct: 143 VIFMVHRLAIQPVDAIYNRLIKQISPPQSKPETFHAARELRRLHQTVESFSRTAASHLEN 202

Query: 215 LSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                E + L+ +  E         ++ AE+ NLAK+ FLA+MSHE+RTPLN +LG S++
Sbjct: 203 ARTLQESEALLKQRVERRTRELRLAKEAAEQANLAKTEFLATMSHEIRTPLNGVLGMSDL 262

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +        + ++  IHRSG+ LL +IN+ILDLSRI+AGR  L  +A  L   + 
Sbjct: 263 LLESDLNSY----QRHHVETIHRSGRTLLRVINDILDLSRIQAGRMPLEVTAFKLRACLE 318

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   + + +A+ K +         L   +  D   + Q++ NL+ NA+KFT   G V V+
Sbjct: 319 DVQALFKDQARRKGLSFSINCQEELPQRLLGDATRLNQILFNLVGNALKFTER-GFVRVS 377

Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V       +     I ++D+G GI++     +   F Q   +I     G GLGL I + +
Sbjct: 378 VQAEQVREADLLLRIQVEDSGIGISDEYKNRLFEIFSQQDSSISRRYGGSGLGLVITRKL 437

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
               GG+    S+   G          RV + +P+
Sbjct: 438 AQIMGGKLGFSSRSGAGSTFWVTARFGRVPDTLPD 472


>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 916

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 160/350 (45%), Gaps = 27/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL+ L I+ L  + L   V     P+   ++T   +    LD  + G      
Sbjct: 176 AFVSTMLLLLCLGIATLFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---NMP 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
              + +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 230 GELSMLKNGINSMAMSLTAYHEEVQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+    + T  +Y+  I RS  HLL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLSPTQADYLQTIERSANHLLTIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L     SL +++ E +I+L   A +K +E+   +  ++   V  D 
Sbjct: 346 DVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLELTLNVHNNVPENVLGDP 405

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             M+QV+ NLL NA+KFT   G + + V   S     +     I D G GI+E +   + 
Sbjct: 406 MRMQQVVTNLLGNAIKFTET-GNIDINVELRSQNNLQVELEVQIHDTGIGISERQQSQLF 464

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +I     G GLGL I Q ++   GG     S+L  G      
Sbjct: 465 QAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFH 514


>gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 697

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +       + ++ AE  N AKS+FLA MSHE+RTPLNAILG  +V     +    +
Sbjct: 308 ISIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNESLL----S 363

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E++  +  S Q LL +I+++LD+SRIEAG + L E  I L++ +       + +++
Sbjct: 364 KEQYEWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKEKSK 423

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K I +   +  S+   V AD   + Q+I NL+ NAVKFT   G + + +  T      I
Sbjct: 424 DKGINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKK-GSIWINITQTECNSTKI 482

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D G GI++  +  +   F Q   +I     G GLGL I + +     G   ++S + 
Sbjct: 483 AITDTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSVIN 542

Query: 464 EGVEVIAILPNTRVLN 479
           EG      LP      
Sbjct: 543 EGSTFTVTLPFKETKE 558


>gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 837

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F+ ++SHELRTPL +I+G+  ++   T GPL  E  +E++  + R+   L N
Sbjct: 605 ELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQ-EQQREFLNIVARNTNRLAN 663

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+ RIE+GR  +  S  SL  +V++     +++A++K +     +   +  + A
Sbjct: 664 LINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLINA 723

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+I NL+SNAVK+T  GG V V+V     +   + + D G GI+  +   +   
Sbjct: 724 DPDRLTQIIANLVSNAVKYTKEGG-VTVSVSAVGDQ-VELEVADTGIGISPADQKRIFEK 781

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +          G GLGLPI ++++  HGG   + S+   G   I   P 
Sbjct: 782 FYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGSRFIVSFPA 832


>gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 2001

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 17/295 (5%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 +S       +    +L   +E   +   E +++AE  N AKS FL++MSHELRTP
Sbjct: 1504 AELYQQSQNYAHQLKQINQELEQRVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTP 1563

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LN ILG++++++             + +  IH SGQHLL LIN+ILDLS+IEA + E+  
Sbjct: 1564 LNGILGYAQILKR---DSNLTSFQTQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYP 1620

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              I     +     ++++RA +KNI    + D  L   + ADEK +RQV+LNLL NA+KF
Sbjct: 1621 KGIHFPSFLDSVAGIIKMRAVDKNILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKF 1680

Query: 383  TAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            T   G+V   V       +       I D G GI   +   +   F Q    I+   +G 
Sbjct: 1681 TDR-GQVTFRVNAIQTEANQAQIRFEIVDTGVGITPEQATKIFQPFEQIGD-IERRAEGT 1738

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVEV---IAILPNTRVLNFIPEDNHESTQ 490
            GLGL I Q ++   G +  + S + EG         L    V   +PE   E+ +
Sbjct: 1739 GLGLAITQQLVELMGSELKVSSTVGEGSTFSFETVFL----VEETVPEMVVETPK 1789


>gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 2333

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1885

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G + ++   EY+  I      LL LIN
Sbjct: 1886 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQDEYVESIRVCADTLLTLIN 1941

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +   + +D       V  D
Sbjct: 1942 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2001

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +   + D G GI E +   + 
Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2061

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +    
Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKAKES 2121

Query: 481  I 481
            +
Sbjct: 2122 L 2122


>gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1101

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 145/332 (43%), Gaps = 11/332 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           AL     +   L           +        + + V       +L              
Sbjct: 494 ALIEVMRTAHPLLVTRRGMRLTGLACPGQTPEVWLGVPIRVRQEVLGIMAVMHFSDPGRY 553

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + + ++L   AE+  L  E           ++ A+  N AKS+FLA MSHE+RTP+NAI
Sbjct: 554 GRKDAELLLSVAEQLALGVERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAI 613

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG +EV     +     E  ++Y+  +  S +HLLN++N+ILD S+IEA + EL      
Sbjct: 614 LGLTEVALRTEL----TEEQRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFD 669

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L +++R  I  L L A+EK + +   I P L   V  D   +RQV++NL+ NAVKFTA  
Sbjct: 670 LHELLRSAIKTLGLGAREKGLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAA- 728

Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G V V  G  +G           + D G GI    +  +  SF Q   +      G GLG
Sbjct: 729 GSVTVRAGLAAGAVGEPGRLVFEVADTGIGIRPDMLEVIFDSFRQADNSTARQYGGTGLG 788

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           L I++ +    GG+    S    G      +P
Sbjct: 789 LAISRELAGLMGGEIRAASTPGCGSRFTFTVP 820


>gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
 gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
          Length = 929

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L +S++    L + V     P+    +    +    LD+ + G      
Sbjct: 175 IFSACLVLIMGLVLSSVFAVRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    V +     E    I            +LE+     D  +KRA+E  
Sbjct: 229 GELDSLRKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +Y+  I +S  +LL +IN
Sbjct: 289 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L        + + E + +    A EK +EI  K+DP +   +  D 
Sbjct: 345 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGLVGDP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             ++QV+ NL+ N++KFT  G   + V +         +   ++D G GI+E +   +  
Sbjct: 405 LRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDMVELQFMVRDTGIGISERQQAQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG+  + S+L +G      L
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGSTFWFTL 514


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 7/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              L   +  +          L ++         +    S   +     +    +V+  +
Sbjct: 247 LDQLGQAVSVVELRNKLVERQLLLFSRHLQNELGAEIKYSQRAMWAIAGVGIIAMVIMFA 306

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQAEKDDLIAELEVAKSL 234
                   +       +   +    +     +      +      E +  IA+ +  +  
Sbjct: 307 WGTSTLYRINSKLSRILQVMSNLRGSSHVEQIPIDGRDEFAKFATELNYTIAKQKAYEQD 366

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + ++ AE  N AKS FLA+MSHE+RTPLN I+G +E++    +    +   K+ + D+
Sbjct: 367 LVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSHL----SAAQKDILNDV 422

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   LL LIN+ILDLS+IE+G   LS    S+ +I+ + + M+   A ++ + +  + 
Sbjct: 423 DASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHVEF 482

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
              +   +  DE  ++QV++NL+SNA+KF+   G V + V      G  I + D G GIA
Sbjct: 483 ADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQ-GNVIMRVSVVEHHGLSIEVADTGVGIA 541

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E ++  +   F Q    I     G GLGL I   ++    GQ  + S L EG      LP
Sbjct: 542 EDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLGEGSRFTFTLP 601


>gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 840

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    +++  L    ++RAE  N AKS FL+ MSHE+RTPLN I+G +E+          
Sbjct: 299 LRHREKLSSELLLAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAEL---GKSHTGE 355

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +  +  I  S  HLL+LIN+ILD+S+IE+G+ EL      L  ++R    +  ++A
Sbjct: 356 PDRMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQA 415

Query: 344 QEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
             + I+            +  D   + Q++ NLLSNA+KFT   G+V + V         
Sbjct: 416 VSRQIDYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSELRRDESG 475

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GIA   I  V  +F Q +  I     G GLGLPI ++ +   GG   +
Sbjct: 476 IWLRFEVRDTGRGIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMMGGSITV 535

Query: 459 RSKLREGVEVIAILPNT 475
            SK+  G      +P  
Sbjct: 536 SSKVGAGSIFTVDIPFA 552


>gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 998

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSL---SDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +   +  +       L  E+E  + +     E ++ AE  N  KS FLA++SHE+RTP+N
Sbjct: 557 RVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMN 616

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF +++  + +        K+Y+  I  S + LL LI++ILD+S+IEAG+  +    
Sbjct: 617 AILGFCDLLLQKDLSLSQT---KKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEP 673

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
           + L  I+RE   +   +A+ K++ +  +ID +L  +++ D   +RQ++ NL+ NA+KFT 
Sbjct: 674 VDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTE 733

Query: 385 IGGR-VHVTVG--WTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            G   +++ V       +G YIS    + D G GIA  +   +   F Q          G
Sbjct: 734 EGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGG 793

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I + + A  GG+  + S+L EG   I   P  R++ 
Sbjct: 794 TGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFPAVRLVE 835


>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 1057

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 15/273 (5%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +  +++   +   +   +E+          R  AE  + AKSRFLA MSHELRTP+  ++
Sbjct: 641 QRELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVI 700

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  +++    +G       + Y+  +H S   LL ++N+ILD S+IEAG+  +    + L
Sbjct: 701 GMIDLL----LGTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRL 756

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPS------LSSVWADEKGMRQVILNLLSNAVKF 382
             ++ + I +    A +K +E+  +             +  D   +RQV++NL+ NAVKF
Sbjct: 757 QALLDDVIDLFAPAASQKGVELRVRQPERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKF 816

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + +        G        ++D G GI    +P +  SF Q   +      G 
Sbjct: 817 TPA-GSIELRAEAQREDGGTWLLRFEVEDTGIGIPPDVVPMLFESFTQADASTTRRFGGT 875

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I + ++   GG+  +RS+ R G      
Sbjct: 876 GLGLAICKRLVTMMGGEIGVRSEPRRGSVFWFT 908


>gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 929

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 142/277 (51%), Gaps = 19/277 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           ++  + NV +   ++E  ++        I EL+  +++  E +++AE  +  KS FLA+M
Sbjct: 653 WNWVRMNVVVTKFESEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLKSAFLANM 712

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNAI+GFS ++        + E   EYI  +  +   LL LI++ILDLS+IEA
Sbjct: 713 SHEIRTPLNAIVGFSGLLVDT----EDMEERCEYIKIVQENNDLLLQLISDILDLSKIEA 768

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G +E +     +  +  + +   Q++  +  +E+     PS  +V +D   + QVI N +
Sbjct: 769 GTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLHQVISNFV 827

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NA+KFT+  G +HV             + D G GI++ ++  +   F +      S   
Sbjct: 828 NNALKFTSS-GSIHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKL----NSFIH 881

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I +SI+   GG   + S+  +G      +P
Sbjct: 882 GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+A++SHELRTPL +I GF E +    +  +  E    ++  I    + L  LIN+I
Sbjct: 228 RSDFVANVSHELRTPLTSIRGFIETLREGAIDNI--ERRDRFLEIIEFEAERLTRLINDI 285

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS IE  +    +  I + + + E   +++  A++KNI++ + ++     +   +  +
Sbjct: 286 LTLSEIENLKEGFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDRL 345

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ+I+NL+ N +K+T  GG V VT          I ++D+G GI++  IP +   F +  
Sbjct: 346 RQMIINLVDNGIKYTPEGGYVKVTTT-DMENNIVIEVEDSGIGISKENIPRLFERFYRVD 404

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                   G GLGL I + I+ +  G   + S++ +G +   +LP  +
Sbjct: 405 KGRSRKLGGTGLGLAIVKHIVESMKGSITVESEVGKGTKFAIVLPKDQ 452


>gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
 gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
          Length = 910

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN+ILD
Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFTITDTGIGISPEDQTKLFTAFN 474

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 531 IEKNQTHRFA 540


>gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 919

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +++  E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 671 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 726

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EYI  +  +   LL LI++ILDLS+IEAG +E +     +  +  + +   Q++  
Sbjct: 727 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 786

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +E+     PS  +V +D   + QVI N ++NA+KFT+  G +HV             
Sbjct: 787 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 843

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI++ ++  +   F +      S   G GLGL I +SI+   GG   + S+  +
Sbjct: 844 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 899

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 900 GSRFWFTIP 908


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A+      ++ AEE    KS FLA+MSHE+RTP+NAI+G S +     +    N
Sbjct: 849  ITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGL----N 904

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+  I ++GQHLL +IN+ILD S+IEAG+  + +    L  ++     ++  +A 
Sbjct: 905  PRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAG 964

Query: 345  EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
             K +E+   +      ++  D   + Q+++N  +NA+KFT   G + + V       Q  
Sbjct: 965  AKGLELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTER-GEISIAVRVQEQDAQRV 1023

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G G+   ++  +  SF Q   +      G GLGL I +S+    GG+  + 
Sbjct: 1024 RLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEVGVD 1083

Query: 460  SKLREGVEVIAILPNTRVLNF 480
            S+  +G      LP  R    
Sbjct: 1084 SEYGKGSTFWVSLPLERGAPA 1104


>gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
 gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
          Length = 912

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 131/253 (51%), Gaps = 13/253 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    + 
Sbjct: 500 ITEMERMKQELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 555

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   +  + + LL LINEILDLS+IEAG  E + + + L  + RE    L+ R  
Sbjct: 556 EERKSFYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCP 615

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
           +  +++  +      ++  D+  + QVI NL+ NA KFT  G    V+ G    G G   
Sbjct: 616 Q-GVKLIYEPSDEEITIEGDKNRIFQVISNLIGNAFKFTTQG---KVSYGYRRKGDGIEF 671

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  G++  V   F +    + S  QG GLGL I ++I+   GG     S++ 
Sbjct: 672 HVSDTGIGIEAGKLDKVFERFVK----MNSFAQGTGLGLSICKTIIERLGGTISASSEMG 727

Query: 464 EGVEVIAILPNTR 476
           +G      LP  +
Sbjct: 728 KGTTFTFTLPEKQ 740


>gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 582

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 138/252 (54%), Gaps = 2/252 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +    + + +AE  N A+S F+ ++SHELRTPLN+ +GFSE++  E +GPL
Sbjct: 326 RDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLGPL 385

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+  K+Y+ ++  SG+HLL+LINEIL++S+IE G  EL    + +   V +  +++   
Sbjct: 386 -NDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDIYTTVEDVEMLMAPI 444

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             E   E+   I+ ++    AD   ++Q++ N+LSNA+KF+     + + +    G+ Q 
Sbjct: 445 LAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENENIIMDIKVIDGKLQT 504

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            +I D G G++E E   +   F Q        ++G GLGL I +  +  H G+  I S+ 
Sbjct: 505 -NITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRFVQLHKGKIWIDSEE 563

Query: 463 REGVEVIAILPN 474
            +G      +P 
Sbjct: 564 GKGTTFCFTIPL 575


>gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
          Length = 929

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +LI + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 176 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLQGNLI 232

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 233 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 292

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 293 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 348

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S++EAG+  L      L + + E I ++   AQ K +E+   I P++   V  D 
Sbjct: 349 DILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDS 408

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   +     +   + D G GI E +   +  
Sbjct: 409 MRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQ 468

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 469 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 520


>gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1064

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +   +  R++A+  N AKS FLA MSHE+RTPLNAI+G  +++    + P+  
Sbjct: 536 MTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGDLLGETALSPV-- 593

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+     +G+ L+ LI +ILDLSRIE G  EL  +   +  +V E   ++   A 
Sbjct: 594 --QRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALVEEVCEVVTSSAH 651

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K + +  +IDP L  V   D+K +RQ++ NLL NAVKFT  G     +      ++   
Sbjct: 652 DKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLDIRHDAARSAAGA 711

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G G+AE  I  V   F QG   I     G GLGL I + +++  GG   + S
Sbjct: 712 VLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRLVSKMGGDIQLES 771

Query: 461 KLREGVEVIA--ILPNTR 476
            L  G       +LP  R
Sbjct: 772 ALGRGTTATVQLVLPVGR 789


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/403 (24%), Positives = 168/403 (41%), Gaps = 27/403 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +LT +   T  IA+ ++ ++  M    +   
Sbjct: 1102 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1161

Query: 167  FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L TQ              A  L  +          L ++N   L  +AE   +
Sbjct: 1162 SQSLAEELQTQQSELRETNKRLEQQAQSLKASEDLLRGQQEELQQTN-AELEEKAELLAI 1220

Query: 225  IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++  
Sbjct: 1221 QKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTD 1280

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
               G L      EY   I+ +G  LL LIN+ILDL++IE+G   +  + I L ++  +  
Sbjct: 1281 NVDGNLT-AKQVEYSQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIE 1339

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  AQ K +    ++ P L + V  D K ++QV+ NLLSNA KFT   G V + +  
Sbjct: 1340 RGFGQVAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTER-GEVRLKIEV 1398

Query: 396  TSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                                 ++ D G GIA  +   +  +F Q          G GLGL
Sbjct: 1399 AKPGWNSNQQPLNSAQNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGL 1458

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             I++ I    GG+  + S   +G      LP     + + + +
Sbjct: 1459 SISREIAHLLGGEIKLTSYPGQGSTFTFYLPQFSAESTLTQAD 1501


>gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1203

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++     
Sbjct: 667 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTL--- 723

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S   LL +IN+ILD S+IEAG+ EL   A  L  ++   + +  L+AQ
Sbjct: 724 -QQKDYLEKADFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 782

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+      +   +   D   + QV++N+LSNAVKFT   G + +       R   I
Sbjct: 783 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-KSGEIELGCEDVGERDHRI 841

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI++ +   +  +F Q   +      G GLGL I++ +++  GG   + 
Sbjct: 842 TLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVE 901

Query: 460 SKLREGVEVIAIL 472
           S++  G      +
Sbjct: 902 SEMGVGSTFSFTI 914


>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
 gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
          Length = 670

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               I+ +G+    +   +     L       L     ++++I+ LE+ K +     K+ 
Sbjct: 115 GAPLITPSGLALGTICTISNEPKTLTDWQRNALVVL--RNEVISRLELRKKI-----KQL 167

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N  KS F++++SHE+RTP+N ++G  +++    +    N+    Y   I RSG  LL
Sbjct: 168 ESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLLETPL----NDKQLRYAQAIKRSGDSLL 223

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN++LDLS++EAG+  + ++  +L ++V +        A EK +E+   I        
Sbjct: 224 RVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDIQLKSDRFI 283

Query: 363 ADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            D   ++Q++ NLLSNA+KFT  G    R+ V            S+ D G G++E +   
Sbjct: 284 GDHYRLKQILNNLLSNAIKFTDKGWTALRIKVVSETDDQATLKFSVSDTGLGLSEKQQSQ 343

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-L 478
           +   F Q +  I     G GLGL I + ++A   G   ++S+  +G      LP   V  
Sbjct: 344 LFKRFQQANETITREFGGSGLGLSICKQLLALMDGDIGVKSEPGKGSTFWFTLPLQVVRE 403

Query: 479 NFIPEDNHESTQ 490
               E+  E+  
Sbjct: 404 EPAVEELTETPD 415


>gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5]
          Length = 651

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 12/259 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    E + +AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 268 VTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLLAET----DDI 323

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  + + LL LI++ILDLS+IEAG +E +   + +  +  E +  L L+ +
Sbjct: 324 GERREYMRVVEENNELLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKVK 383

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K +E+      +   V  D+  + QVI N ++NAVKFT   G + +    T G      
Sbjct: 384 DKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVKFTDE-GSITLGY-RTEGGELLFH 441

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E    ++   F +      S  QG GLGL I++SI+   GG+  + S++  
Sbjct: 442 VEDTGSGISEEHRQSIFDRFVKL----NSFAQGTGLGLSISKSIVEQMGGRIGVESEVGR 497

Query: 465 GVEVIAILPNTRVLNFIPE 483
           G      +P   V    PE
Sbjct: 498 GSRFWFTIPA--VTCDAPE 514


>gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 927

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 164/385 (42%), Gaps = 10/385 (2%)

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                   L+ + A+        L +           Y    +  + + +    F     
Sbjct: 263 TREAEHQRLILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQ 322

Query: 163 VFLSFFPVVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              +      A +     A ++  + +   +G          ++     +++        
Sbjct: 323 QVAARRDESDAEADLDHDAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGGTVTLV 382

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                I +L+  +   D+ R  AE  N  KS FLA+MSHELRTPLNAI+G+S+++  +  
Sbjct: 383 MD---ITDLKQREIELDQARAEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLREDAA 439

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              N+    + +  I  +G+HLL+LIN+ILDLS+IEAG+ ++    I++ +++ +  +++
Sbjct: 440 DDGNDGAVAD-LTKIEGAGKHLLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLLI 498

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
           +  A   +  +        S +  D   ++Q +LNLLSNA KFT  GG + ++V      
Sbjct: 499 EPVAARNDNRLVVACAAGASRMVTDVTKLKQSLLNLLSNAAKFT-KGGLLTLSVDPDPDR 557

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++ D G G++  ++  +  +F Q   +      G GLGL I +S     GG   
Sbjct: 558 AGNLCFAVSDTGIGLSPEQVGRLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDIA 617

Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482
           + S L  G   +  LP    +   P
Sbjct: 618 VTSALGAGSTFVITLPAHPPVKAPP 642


>gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 637

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 17/316 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEK 221
              V + ++     +     I +A +L   L    Y+  HL ++ +      + + + + 
Sbjct: 9   VMSVNLHVAAAPWKTWWAYSIYIAFLLGIVL-MIIYLRTHLQQTEITKQKRFVQALEQQV 67

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  A L+   +   +  ++AEE    KS FLA+MSHE+RTP+N ++G   +++   +  
Sbjct: 68  SEKTASLKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTT 127

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  + +     S   LL LIN+ILD S+IEA + E+      + +++      +  
Sbjct: 128 ----EQSQRVNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAH 183

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            AQEK +++   +   S S + +D   ++Q++ NLLSNAVKFT   G + VT        
Sbjct: 184 LAQEKGLDVVVDLSKVSESKINSDPSRIQQILTNLLSNAVKFTEQ-GELSVTAELLPTNN 242

Query: 401 Q-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           Q     +I++ D G GI   ++P +  +F Q   +      G GLGL I + +    GG 
Sbjct: 243 QNTALMHIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGD 302

Query: 456 FLIRSKLREGVEVIAI 471
             + ++L +G      
Sbjct: 303 ISVTTELGKGSRFDVT 318


>gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 780

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/359 (28%), Positives = 159/359 (44%), Gaps = 22/359 (6%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-----FPVVVALSTQAIMSMHV 184
                    +  S  L++AL+IS L    L   +             V+      +    
Sbjct: 157 LWSQLYMSLLISSLVLVVALTISILLAKRLLPLITDPLEELANLAHRVSEDRNYSLRARK 216

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
            +    GML  +++F         ++  +         +L   +    +   E R+RAE 
Sbjct: 217 RNSDEIGMLVDSINFMLASVRQRDQAINET------NRNLEQLVADRTAKLVEARERAET 270

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               KS FLA+MSHELRTP+NAI+G S V++ E +    +E+    I  I +S  +LL+L
Sbjct: 271 ALETKSDFLATMSHELRTPMNAIIGMSSVLQFEDL----DESRARQIEVIRKSSVNLLDL 326

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           IN+ILD S+IEA R EL  +A  L+  + E + +     +   +      DP+L   +  
Sbjct: 327 INDILDFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFDPTLPSHIKG 386

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIP 418
           D   +RQ+++NLL+NA KFT   G V + V              IS++D G GI E  + 
Sbjct: 387 DVTRVRQILVNLLNNAFKFTKK-GTVTMDVFHLPADRRGSERIQISVRDTGIGIPEESLK 445

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           ++  SF Q + +      G GLGL I+  +    GG   + S+   G      +P  RV
Sbjct: 446 SIFESFTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVESEYGTGSVFHFTMPINRV 504


>gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 836

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 129/268 (48%), Gaps = 8/268 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
               L      +  I   +  +   +     A+  N+AK++FLA+MSHE+RTP+N +LG 
Sbjct: 425 ANGELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMSHEIRTPMNGVLGM 484

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +V+  E      ++  KE +  I  SG HL++++N+ILDL+++E  + EL     ++  
Sbjct: 485 VQVMLSEA----KDKQQKENLSLILESGNHLISILNDILDLTKVEQNKIELESCPFNIEQ 540

Query: 331 IVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-R 388
           I+       Q   QEK IE+  +    +  +   D   +RQV+ NLL+NA+KFT  GG  
Sbjct: 541 IIAPLRSTYQAVCQEKGIELNIECHIDANMTFLGDRNRVRQVMYNLLNNAIKFTERGGVT 600

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +T   T+      S++D+G GI    +  +   F Q   +      G GLGL I + +
Sbjct: 601 VVITNNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTREYGGTGLGLAIVKQL 660

Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPN 474
           +   GG     S+  +G        LP 
Sbjct: 661 VEKMGGTIDATSEQGQGTRFEFEIKLPV 688


>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 900

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 8/280 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +       +  S              I E + A++ S +  + A+  N AKS FLA+MS
Sbjct: 220 GWMLIQGQIMTLSLQGSAQKVIGTLQDITEQKNAEAASRQAVEAAKAANQAKSEFLANMS 279

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ILG +++     +        ++YI   H S   LLN+INEILD S+IEAG
Sbjct: 280 HEIRTPMNGILGMTQLCLETDLTA----DQRDYINMAHSSASALLNIINEILDFSKIEAG 335

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLL 376
           +  L+    ++  +++E    L  +  EKNIE+   I P +   +  D   +RQV+ NL+
Sbjct: 336 KLTLNAEDFAIRPLIQEITRPLMPKFSEKNIELLVDIHPDVAIEIHGDPLRLRQVLTNLI 395

Query: 377 SNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            NA+KFT   G V + +            S+ D+G GI E +   +  SF Q   +    
Sbjct: 396 GNALKFTLH-GEVVLRILPVPDALHRLLFSLHDSGIGIPEDKQKVIFESFSQADNSTTRK 454

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             G GLGL I+  ++   GG+  + S++ +G      LP 
Sbjct: 455 YGGTGLGLTISSRLVEKMGGELHLTSQVGQGSCFSFSLPV 494


>gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1494

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 24/251 (9%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E      +E +  AE  + AKS FLA+MSHE+RTP+NA++G + ++    + P      +
Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQR 767

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  I  SG  LL +IN+ILD S+IE+G+ EL +    L + + EC+ +L  RA EK +
Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGL 827

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399
           E+   IDPS    +  D   +RQV++NL+SNA+KFT+  G V + V  T           
Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVILAVKATHPDAKKDVKKF 886

Query: 400 ----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                          ++D G GI    I  +  +F Q   +      G GLGL I+Q + 
Sbjct: 887 DDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLS 946

Query: 450 ANHGGQFLIRS 460
               G+  + S
Sbjct: 947 QLMNGKMWVAS 957


>gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 608

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 2/232 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++  F+A++SHELRTPL  I  + E +    +   + +  + ++G      + ++
Sbjct: 371 EKLERSRKEFVANVSHELRTPLTTIKSYLEALGDGAI--EDPQLSERFLGVTRNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++ +  L ++  ++ D++ E      ++++++ I I   +D  + S+ 
Sbjct: 429 RLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKIRIDVSVDARVGSIS 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ NLLSNA+K+TA  G V +           IS++D G GI + ++  +  
Sbjct: 489 IDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFE 548

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  HGG   + S+   G  V   LP 
Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRVSFTLPV 600


>gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
 gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
          Length = 2330

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1821 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1880

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   N    EY+  I      LL LIN
Sbjct: 1881 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLNREQDEYVESIRVCADTLLTLIN 1936

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + +D       V+ D
Sbjct: 1937 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVFGD 1996

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +   + D G GI E +   + 
Sbjct: 1997 PVRLHQIFMNLLSNSYKFTPKGSVTVAARVTREGKGRVRLECAVTDTGIGIPEEQKSRLF 2056

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG   + S   +G  V   L   +V + 
Sbjct: 2057 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGKGTTVTFHLSFNKVKDP 2116

Query: 481  I 481
             
Sbjct: 2117 A 2117


>gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 936

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEELS--- 743

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 744 -ERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 803 E-EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 915 KGSRFWFTIPGVIVTEEV 932


>gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1229

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 160/422 (37%), Gaps = 22/422 (5%)

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI-AIGLCWTLLTLVEPGTWT 133
           W L   A     L           ++ E       L V +    GL  T   L+      
Sbjct: 324 WPLYASASALVLLLAVIGAYLHASRMLERQDAAQALAVSEARFRGLVETSPDLIWETDMD 383

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
                    A  L     +AL    +   +  +         T         +     + 
Sbjct: 384 GVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAPEDTPETWEATLPGAGEGGGKALE 443

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
            + +   T     L +  V            I E + A+ L D  R+ A   N AKS FL
Sbjct: 444 VSCVPRRTPEGEALGRRGVA---------RDITERKNAQCLLDAARQEAVRANQAKSEFL 494

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A MSHE+RTPLNA++G S +     + P      ++Y+  I  S   LL +IN+ILD S+
Sbjct: 495 ARMSHEIRTPLNAVIGMSHLALKTELTP----RQEDYLTKIRSSADTLLAVINDILDYSK 550

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           IEAGR+ +      L  ++   + ++   A EK +E    +   +   +  D   + QV+
Sbjct: 551 IEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPSWLVGDPLRLGQVL 610

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           LNL+ NAVKFT   G V V V              +++D G G+   +   +   F Q  
Sbjct: 611 LNLVGNAVKFTDS-GEVLVEVRLEKAVADAARLRFAVRDTGIGMTPEQKHNLFRPFAQAD 669

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNH 486
            +I     G GLGL I   ++   GG   + S   +G E      LP ++       DN 
Sbjct: 670 GSISRRYGGTGLGLSICHRLVELMGGNLAVESVSGQGSEFYFSLTLPVSQEGKTGCTDND 729

Query: 487 ES 488
           E+
Sbjct: 730 EA 731


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +      +E  KE    I+     +  
Sbjct: 360 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIVDDI--AATDEEKKELAKVIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG   L    + L   V   I   Q  A+EK + +  +++  L  V  
Sbjct: 418 LVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMNDELI-VSF 476

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T  GG V V V         IS++D+G GI E ++P V   
Sbjct: 477 DPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEE-VVRISVQDSGSGIPEEDLPFVFER 535

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL IA++I+  H G   + SKL EG      LP  
Sbjct: 536 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLPLK 587


>gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 917

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 164/373 (43%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169
           L W  L L     +  G  +     +   A L    L+AL +    N  L          
Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLIIAGLICTGLLALRMGRTINNPLSQIKHAVTQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L T+  +        LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            E      LP TR
Sbjct: 502 SEFWISLRLPKTR 514


>gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 770

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 174/364 (47%), Gaps = 9/364 (2%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           + W  + L +      E+  I + + L  A++ S +   +L   V L+  P+   +    
Sbjct: 181 IGWVRIGLSKEVMSRSEHRIIIRGSML--AVAFSIVGALLLYLFVSLATRPLYALIDAVK 238

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDE 237
            +              + +   T     + ++  +     +  +D L   +    +    
Sbjct: 239 EVREGEHPEVPVLSPKSEIGRLTAEFNRMSRAIKEREDELKRHRDHLEELVAERTAELTI 298

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +++AE  N AKS FL+SMSHELRTPLNAILG+++++    +    ++  ++ +  +  S
Sbjct: 299 AKEQAESANRAKSDFLSSMSHELRTPLNAILGYAQILR---LHNNLSDIQRQQLDIMRNS 355

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+HLL LIN+ILD+ +IEA + ++ ++   L  ++ +   + +L+A+EK ++   + +  
Sbjct: 356 GEHLLTLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQFHYEPETP 415

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           L   V  DE+ +RQ++LNLLSNAVK+T  G   + V+ G          + D G GI   
Sbjct: 416 LPAYVHGDERKLRQILLNLLSNAVKYTRRGSVTMRVSYGRAGDGLFRCEVADTGIGIPAD 475

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +   F Q +   +   +G GLGL I + ++    G   + S   +G      +P  
Sbjct: 476 KLGVIFEPFTQLTNDRQGR-EGTGLGLNITKRLLTLIQGTMGVESIPGKGSTFWLEVPLA 534

Query: 476 RVLN 479
            +L+
Sbjct: 535 SLLD 538


>gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 649

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/272 (36%), Positives = 152/272 (55%), Gaps = 1/272 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           A++ +   EL  A+    E  ++AE  N +KS FLA++SHELRTPLNAI+GFS+++  + 
Sbjct: 378 ADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKV 437

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            GPL +E Y+ Y  DI  SGQHLL+LI ++LDLSRIE G+  L    + L   ++  + M
Sbjct: 438 FGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLVDLPIEIQAAVAM 497

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++ R  ++   I  ++     ++ AD + +RQ+++NL+SNA KFT   GR+ VT      
Sbjct: 498 VRARRGQEIASIQIEVAEGFPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDD 557

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ D+G GI   +   VL  F Q    +    +GVGLGLP+ ++ +  H GQ  +
Sbjct: 558 G-ISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQL 616

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            S + EG  +   LP  R+    P      T 
Sbjct: 617 ESAIGEGTTITIRLPKERIDGTRPGALAAGTD 648


>gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
          Length = 925

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 141/265 (53%), Gaps = 10/265 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              ++  + + ++E+     D  +KRA+E    KS+FLA+MSHELRTPLN ++GF+    
Sbjct: 261 QATSDLRETLEQMEIQNVELDLAKKRAQEAVRIKSKFLANMSHELRTPLNGVIGFT---- 316

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +T+    + T ++Y+  I RSG HLL++IN++LD S++EAG+  L     +L  I+ E 
Sbjct: 317 RQTLKTPLSPTQRDYLQTIERSGNHLLSIINDVLDFSKLEAGKLMLETIPFALRAILDEV 376

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +I+L   A EK +E+  ++   +   V  D   ++QV+ NL+ NA+KFT   G + + V 
Sbjct: 377 VILLAHTAHEKGLELILQVQREVPEYVIGDPLRLQQVMTNLIGNAIKFTEQ-GHIIIRVS 435

Query: 395 WTSGRGQYISI----KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                 + + I    +D G GI E +   +  +F Q   +I     G GLGL I Q ++ 
Sbjct: 436 CQGHERERVEINVQIRDTGIGIPERQQSQLFQAFRQADASIARRHGGTGLGLVITQKLVH 495

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
             GG+   RS+   G      +P  
Sbjct: 496 EMGGEITFRSRTGRGSTFWFHIPLQ 520


>gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1075

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 133/277 (48%), Gaps = 6/277 (2%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  I+    +     +         I   +  +    E +++AE  N AKS FLA M
Sbjct: 647 AFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVM 706

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NAILG +E++    +           +  ++RSG+ LL+LIN+ILDLS+IEA
Sbjct: 707 SHEIRTPMNAILGMAELLRESDLTS----RQHWCVETLNRSGESLLSLINDILDLSKIEA 762

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            R  L      L+ +V +   +    AQ K + +   I P+L   V  D   +RQ+++NL
Sbjct: 763 ERLTLEHVVFDLVQLVGDVCSLFGYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNL 822

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + NAVKFT   G V V +   +       I+D G G++  +   +   F Q   +I    
Sbjct: 823 VGNAVKFTKQ-GHVSVELNPLADGRLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREH 881

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I   ++A  GG+  + S L EG      L
Sbjct: 882 GGTGLGLTICMRLVALMGGEMQLESTLGEGSCFHFEL 918


>gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1253

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 134/260 (51%), Gaps = 14/260 (5%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                ++ AE  + AKS+FLA+MSHE+RTP+NA++G S+++    +    +   ++Y+G 
Sbjct: 513 EIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPL----DAKQRDYLGK 568

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S + LL +IN+ILD S+IEAG+ +LS    SL D++ +   +    A  ++IE+   
Sbjct: 569 IRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFD 628

Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDN 408
           +   SL  V  D   +RQV++NLLSNAVKFT   G+V +++               ++D 
Sbjct: 629 LAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQ-GQVVLSIRQLDAGTASARLRFEVRDT 687

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA  +   +   F Q   +      G GLGL I+Q ++   GG  ++ S    G   
Sbjct: 688 GIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPGAGSRF 747

Query: 469 IA--ILPNT--RVLNFIPED 484
                LP +  +     P D
Sbjct: 748 YFDLTLPVSSDQTRPSSPGD 767


>gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 336

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE + AKS FLA+MSHE+RTP++ I+G + +     +     +  +E++  + +S   LL
Sbjct: 1   EEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDL----TDEQREHLETVAQSADCLL 56

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           +++N ILDL++IEAGR EL     S+ D V   I MLQ++A +K + +  ++DP +   +
Sbjct: 57  HIVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHL 116

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             D   ++Q ++NL+ NA+KFT  G    +    V   +      S++D G GI++ +  
Sbjct: 117 IGDAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQK 176

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            V  +F Q   +      G GLGL I + ++   GG+  + S+  +G     I
Sbjct: 177 EVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYFI 229


>gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1107

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 6/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++  +  + +AEE   AK  F+A+MSHE+RTP+NAI+GFS+++    +    +
Sbjct: 514 ITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDTPL----S 569

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++++  ++ + + LL L+NEILD +++E G+  +     +L  ++   I    L A+
Sbjct: 570 KEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLEAK 629

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +KN+ +   I+ S+S+  + D   +RQ++ NL+ NA+KFT   G V VTV  T     + 
Sbjct: 630 KKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQ-GAVTVTVSTTQNNHLFF 688

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GIA+  I  V   F Q          G GLG  I++ ++    G   + S++ 
Sbjct: 689 EVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEVD 748

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 749 KGSCFYFSLP 758


>gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
          Length = 1385

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/240 (35%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE+ N AKS FLA+MSHE+RTPLN ++GF+E++    +    +E  ++Y+  I +S 
Sbjct: 395 KEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTEL----DEEQQDYVDTIEQSS 450

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           ++LL +IN ILD+S+IE+ + EL +   + I      + +   +A EKNI+I   IDP+L
Sbjct: 451 ENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKATEKNIDILLYIDPTL 510

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGI 412
              ++ D   +++V++NL+SNAVKFT  GG + V +               S++D G GI
Sbjct: 511 IHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVEDTGVGI 570

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           AE ++  V  +F Q    I     G GLGL I+   +A  GG+  ++S L +G      L
Sbjct: 571 AEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKGTRFYFTL 630


>gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 558

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 12/355 (3%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                    L ++ +  L++ LS+       L           V+ +    + +      
Sbjct: 202 AALGSFRNRLFVFSAILLVVTLSVIMFVTSRLVARPLQELTNRVLEVGKGNLNADFGDIH 261

Query: 188 SLAGMLATALSFFTYITY------HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           +   +   +  F   +        ++ +            +  + E + + ++ ++   +
Sbjct: 262 AYGEVATLSREFSDMVAKIKDLYDNMERKVKSRTRELEAANLRLTEGKKSLAVLNQ---K 318

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             E +  KS F+A+M+HELRTPL +I+ F E++  E  GP+ NE  +E + DI  S Q L
Sbjct: 319 LSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPI-NEEQQENLMDIKTSAQQL 377

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           + LIN+ILD+++ EAG   L +  + L D+ R     +   A +  + +       L  V
Sbjct: 378 MLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLDVS-AVDLPLV 436

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + D + +RQ++ NL++NAVK +  GG VH+     +     IS++DNG GI    +P + 
Sbjct: 437 YGDPERLRQMLSNLIANAVKHSKEGGYVHIYAKADNE-FAAISVEDNGDGIPPELMPHIF 495

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             F QG  ++K    G GLGL + +++     G   + S++ EG      +P  +
Sbjct: 496 EKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHIPFAK 550


>gi|119476448|ref|ZP_01616799.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
 gi|119450312|gb|EAW31547.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
          Length = 458

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 5/258 (1%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM-G 280
           + +  +L  A +   + ++ A+  N AKS FLA+MSHELRTPLNAI+G+SE++  E    
Sbjct: 197 NAMSGKLRQAMADVKKLKEDADFANNAKSDFLANMSHELRTPLNAIIGYSEMMLEEIDPD 256

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            +NNE  +  + +I  +G+HLLN IN++LD S+IE+G   L         I+ E I  + 
Sbjct: 257 DVNNEGQQSDLKNILIAGKHLLNQINDVLDFSKIESGNMTLYAELFDSNAILSEVIATMT 316

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A +++  +    D  +  +  D    R +  NLLSNA KF+     + ++        
Sbjct: 317 PLAGQRDNTLIYSGDQKIPLLKNDATKFRHIFTNLLSNACKFSEQN-AIQISARLGPSGH 375

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++ D+G G+ E ++  +  +F Q   +      G GLGL + +      GG+  
Sbjct: 376 STMAIFTVSDSGIGMTEKQLSIIFEAFKQADSSTTRQYGGTGLGLTLCKQYCDLMGGKIQ 435

Query: 458 IRSKLREGVEVIAILPNT 475
           + S++  G      +P +
Sbjct: 436 VNSEVGGGTTFTVHMPLS 453


>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
 gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 918

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TSPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   + +K +E+   I   +   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425
           +QVI NL+ NA+KFT  G   V V     S     I +  +D G GI E +   +  +F 
Sbjct: 410 QQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQIRDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 470 QADASISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTFWFHI 516


>gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 767

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 11/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+      +  AE  N  KS FLA+MSHE+RTP+N ++G ++++    +   
Sbjct: 357 RDITERKRAEDELLRAKAAAETANTTKSEFLANMSHEIRTPMNGVIGNAQLLRFTDL--- 413

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E    Y+  I    +HL+++IN++LD+S+IEAG+ EL +++ SL   + + +  +  R
Sbjct: 414 -TEEQSRYLEYIEADAKHLVSVINDLLDISKIEAGKMELEQTSFSLRGCINDLLKPMTPR 472

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
              K +    +I  ++  ++  D+  ++Q++ NL+ NA+KFT   G + + V        
Sbjct: 473 IATKGLIFNTEIANTVPDALTGDQLRLKQILRNLVGNAIKFTDQ-GSITLRVELLEHSEN 531

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               Y S+ D G GI +  +  + T F Q   ++     G GLGL I   +    GG   
Sbjct: 532 KALFYFSVIDTGIGIPQEALERLFTPFTQADSSVTRKFGGTGLGLSICNRLAGLMGGNIS 591

Query: 458 IRSKLREGVEVIAILPNT-RVLNFIPEDNH 486
           + S    G      LP   R    +P++  
Sbjct: 592 VESSEGAGSCFHVTLPFQTRQAGTLPQEEP 621


>gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon
           GZfos9E5]
          Length = 424

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             + EK  L+ ELE   +   +  +     EE    K+ FL+  SHELRTPL  +    +
Sbjct: 153 RAEEEKRRLMEELETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQ 212

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   MG L+ +  ++ I  + R+   L NLI +ILDLSRIEAGR +LS  +++L D V
Sbjct: 213 MLQEGYMGKLD-KKQEKSIEVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAV 271

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +E I M +  A+ KNIEI  K+   + ++  D + +RQ I NLL+NA+KF+   G+V + 
Sbjct: 272 KEAIKMQEAFAKGKNIEISAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIE 330

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                G+    SI D G GI++ +   +   F Q   ++     G GLGL I + I+  H
Sbjct: 331 TKRL-GKNVQFSITDYGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAH 389

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480
            G+    S+L +G     ++P  + +  
Sbjct: 390 NGKIWAESELGKGSTFYFVIPTKQKITE 417


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
          Length = 1268

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 11/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    +    E ++ AE+ N AKS FLA+MSHELRTP+NAILG  ++ +   +    N
Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+     + Q LL L+N+ILD S++EAG+ E+ +   SL +++ E  I+L    Q
Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K++EI  +ID  + + +  D   +RQ++LNL  NA+KFT   G V V++   S  G   
Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEA-GEVKVSIQTESHNGDRC 683

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D G G+ E +   V   F Q   +I     G GLGL I + ++    G   ++
Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDNHE 487
           S+   G E    +    V     PE + E
Sbjct: 744 SEQGVGSEFSFTVNLGCVDEERQPEPSAE 772


>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 678

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +A   +  KS+FLA+MSHE+RTP+N I+G S ++    + P   
Sbjct: 25  ITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLDTRLSP--- 81

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E+   + +S + LL +IN+ILD S+IE+GR  + E    L  +V + + +L  RA 
Sbjct: 82  -EQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLALLGERAI 140

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           +K IE+  +    L + +  D   +RQ+I NL+ NA+KFT   G V VTV          
Sbjct: 141 DKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTER-GEVSVTVTRIQETNTTL 199

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS++D G G+A+   P +   F Q   +      G GLGL I++ ++   GG+    
Sbjct: 200 HFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIGFT 259

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           +K   G      L   ++L   P
Sbjct: 260 TKPGRGSTFWFDLCLPKLLEATP 282


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 157/379 (41%), Gaps = 23/379 (6%)

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL------IALSISALSNF 157
                  L   +A     T  T     T T        SA ++      I+L+ +  +  
Sbjct: 308 RHLWKIHLAYAVAALTLVTTHTFSWSQTVTLAQFLFLASAIIILTKSVQISLAGNVEAKL 367

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
                  L+   +   L  +         +   G L   L+    +     ++   + + 
Sbjct: 368 FTLGFGLLTLSAMNDILIYRLEWVNWYQKLYPWGTLLFILTLGVMLERQFIQARNLLQNY 427

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E               +      +  +  K  FLA+ SHEL+TPLN I+G +E +   
Sbjct: 428 AIE--------------LETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDG 473

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G L++ T +  +  I  SG+ L  L+N++LD S+++    +L+   + + ++    + 
Sbjct: 474 VTGNLSDAT-RFNLSLIVSSGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLT 532

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           + Q    +K IE+   I+P +  V ADE  ++Q++ NL+SNA+KFT   G + V+    +
Sbjct: 533 ISQPLVGKKPIELINGINPDIPPVDADENRVQQILYNLVSNAIKFTEQ-GTIEVSATPVN 591

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            R   I + D G GI+  +I  +  SF Q   +I     G GLGL I + ++  HGG   
Sbjct: 592 DR-LEIHVVDTGIGISPDKINRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIK 650

Query: 458 IRSKLREGVEVIAILPNTR 476
           + S    G      LP ++
Sbjct: 651 VDSTPGVGSRFTFTLPLSQ 669


>gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens]
          Length = 917

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 13/389 (3%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
             +             L   ++ +     LL+       +   + +    T L+AL +  
Sbjct: 133 HRNLAGELIPEEADRLLGWVELELSHSGMLLSGYRSMFASLLLIAVCLGLTALLALRMGR 192

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
             N  L              L T+           LA  +             L  S  +
Sbjct: 193 TINRPLSQIKHAVAQLKDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEELQHSIDQ 252

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                 +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +
Sbjct: 253 ATEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHL 309

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   + P       +Y+G I +S   LL +INEILD S+IEAG+  L     +L D+++
Sbjct: 310 LQKSELTP----RQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQ 365

Query: 334 ECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH-- 390
           + + +L   A  K +E+       +  S+  D   ++Q++ NL+SNA+KFT  G  V   
Sbjct: 366 DTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARA 425

Query: 391 -VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +           ISI+D G G++  ++  +  +F Q   ++     G GLGL I++ ++
Sbjct: 426 MLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLV 485

Query: 450 ANHGGQFLIRSKLREGVEVIA--ILPNTR 476
              GG+  + S   EG E      LP TR
Sbjct: 486 EQMGGEIGVDSTPGEGSEFWISLRLPKTR 514


>gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 542

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                + H+ + N          D  + E + A     + +++AE  + AKS FLA+MSH
Sbjct: 123 IVPVYSAHVMQKNPDGSKYMYCIDVDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSH 182

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN +LG  ++++         E   EYI       + L  L+++ILDLSR+EAG+
Sbjct: 183 EIRTPLNGVLGMLQLLKS----APEKEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGK 238

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLS 377
             +  +   L+++++    + +  AQ+K +++   + P+ ++ +  D   ++QV+ N++S
Sbjct: 239 LAVDPAPFDLLELMQNLTDLYRPSAQQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIIS 298

Query: 378 NAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NA+KFT   G + V                 S+ D GPGI + ++  + + F Q S   +
Sbjct: 299 NAIKFTND-GIIKVETYPLPHTTAGTTKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQ 357

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              QG GLGL I + ++   GG   I S+L  G  V   +P
Sbjct: 358 RTHQGAGLGLSICKQLVELMGGNISIESELGIGTTVYLCIP 398


>gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 954

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/259 (35%), Positives = 139/259 (53%), Gaps = 11/259 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E ++ +    +T    +     K  FLA+MSHELRTPLN ILG SE ++   +G L N
Sbjct: 547 ISERKLMEIKLQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTL-N 605

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I  I +SG+HLL LI++ILDLS+IEAG+ EL  + +S+ ++    + ++   A 
Sbjct: 606 PNQHHAIAMIEKSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAF 665

Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            K I I   I   L    +  D + +RQV++NLLSNAVKFT   G++++ VG        
Sbjct: 666 TKQINIESNIPQQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLA 725

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +  Y S+ DNG GIA  ++  +   F Q   ++     G GLGL + + I+  HGG
Sbjct: 726 ISTPQSIYFSVVDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 785

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S+L +G      LP
Sbjct: 786 CVEVSSQLGKGSCFTVYLP 804


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 9/241 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   + R +AE  N AKS FLA+MSHE+RTP+N I+G ++++    +G    E  + ++
Sbjct: 199 ENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSETGLG----EEQRLFV 254

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA R EL  +       + E + +LQ  A++K+I + 
Sbjct: 255 DTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLLQPPARDKDIALL 314

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKD 407
              D  L + V  D   +RQ++ N++ NAVKFT   G V ++V  T   G     ++I+D
Sbjct: 315 VDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPS-GHVLISVTGTHEDGVCDLRVTIQD 373

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +I  +   F Q         +G GLGL I + ++   GGQ  + S+  EG  
Sbjct: 374 TGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQIWVTSENGEGTC 433

Query: 468 V 468
            
Sbjct: 434 F 434


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 141/263 (53%), Gaps = 2/263 (0%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +    +   L  EL+ ++    E  ++    N  K  FL+SMSHELRTPLNAILG+S
Sbjct: 144 LARIRHHLQHKRLDDELKRSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYS 203

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+    MG L N    EY  +I+ SG +LL +IN++LDLS+IEAG+ EL      +  +
Sbjct: 204 EVLLDGMMGEL-NPKQLEYCKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEIL 262

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V   I +++ +A    I +   I   +     D   ++Q+++NLLSNA+KFT  G +V +
Sbjct: 263 VNSVIGIIKEKASRHGIILLTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGL 322

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMA 450
            V     +   I + D G G++E ++  +   F Q   +IK    +G GLGL +   ++ 
Sbjct: 323 KVSLHDDQELLIQVFDQGCGVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVL 382

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
            HGG   ++S+L +G      LP
Sbjct: 383 LHGGSIDVKSELGQGSSFFIRLP 405


>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 1001

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 11/250 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE  + AK+ FL  MSHELRTP+N I+G  E+++   +    +E  + Y 
Sbjct: 749 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTEL----DEDQRNYT 804

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  S   LL+++NEILD S+IE G   L+   I +  ++   + +   +A+EK + + 
Sbjct: 805 DILMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKGLLLS 864

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405
             I+ ++  V   D   +RQV++NL+SNA+KFT   G + ++V       T        +
Sbjct: 865 CSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNE-GSISMSVEGLHRTGTQEFTLAFQV 923

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI   +   +  SF Q   ++     G GLGL I++ ++   GG   + S+ + G
Sbjct: 924 KDTGIGIPAEQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESREQLG 983

Query: 466 VEVIAILPNT 475
                 +P  
Sbjct: 984 SSFYFTIPTR 993


>gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b]
          Length = 909

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 179 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 238

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 239 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 298

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN+ILD
Sbjct: 299 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 354

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 355 FSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 414

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 415 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 474 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 529

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 530 IEKNQTHRFA 539


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 919

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L+    D 
Sbjct: 625 TRFSVDLPLSPALDAGEADE 644


>gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 806

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 9/368 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L  P   T +   ++    +  +  + A  N ++   + +    V+  +     ++  V 
Sbjct: 272 LWVPMFLTEDGFPLWVGRVVDPS-PLDAFRNELIVRVLTIIAVLVLAVMGLARWIAARVE 330

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-KRAEE 244
                 +                 +  + L    E+   +A        +     +  E 
Sbjct: 331 HFGHELLGGIQRILRDGQPLRFSWTGPRELRELGERLTELAATHAEHLYAARAHTRELER 390

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS+FLA++SHELRTPLN+IL  S+++     G   + T +     IH +G+ L  L
Sbjct: 391 SNRYKSQFLANVSHELRTPLNSILLLSKML--GAEGNGLSPTQRRQAQVIHEAGRDLRAL 448

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           I+ ILD+SRIE+GR  L+   + L  ++ + I +   +  +K +E+  +++P     +  
Sbjct: 449 IDNILDISRIESGRLGLNPEPVDLRPMLEDLIELFSPQLADKPVELSLRLEPDAPEHIRT 508

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           D   +RQ++ N L+NA+KFT   G V + VG    S R   +S+ D G GI   +   + 
Sbjct: 509 DRDKLRQILKNFLANAIKFT-ECGEVRIEVGGCAESERPLILSVIDTGIGIPPDKQEIIF 567

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   + +    G GLGL I++ +    GG+  + S    G     +LP +      
Sbjct: 568 EAFQQADGSTRRRYGGTGLGLAISRELATLLGGRIEVESTPGIGSRFSLLLPLSP-EGVA 626

Query: 482 PEDNHEST 489
           PE   ES 
Sbjct: 627 PETRPESA 634


>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 920

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             L          +  A++ N AKS FLA+MSHE+RTP+NAI+G S +     +    N 
Sbjct: 137 QMLRNQARELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIGMSHLALKTDL----NA 192

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++Y+G IH S   LL +IN+ILD S+IEAG+  +   A  L D++     ++ ++ +E
Sbjct: 193 KQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNVANLVSMKVEE 252

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY- 402
           K +EI  ++D  +   +  D   + Q+++NL++NAVKFT  G  V  +T           
Sbjct: 253 KGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAITAELDCESHVVV 312

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D+G G+ + +I  +  +F Q   +      G GLGL I + ++    G   + S+
Sbjct: 313 QFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGMMDGDIWVESQ 372

Query: 462 LREGVEVIAI 471
              G +    
Sbjct: 373 PGRGSQFTFT 382


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F+A++SHELRTPL +I GF E +    +   N E   +++  I    +
Sbjct: 222 RRLE---KIRNEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +         L + + + + ++   A+ KNI + + ++    
Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGL 336

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  ++    Q+++NL+ N +K+T  GG V V+     G    I +KDNG GI++  IP 
Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVKDNGIGISKENIPR 395

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +      G GLGL I + I+ +  G+  + S++ +G + I   
Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFIMKF 448


>gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas
           ingrahamii 37]
 gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 1121

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 9/351 (2%)

Query: 149 LSISALSNFMLPYAVFLSF--FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           L+++   +F+    +FL +   P+      Q   S  V    L  ++   +S+   +   
Sbjct: 568 LALTFTLSFLSAGILFLIYQQVPLDDPRVKQVFASTLVKIFFLLLIIIGVVSWLFILVRS 627

Query: 207 LFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++ +K L  Q       +   E   S     ++ AE  N AKSR+LA +SHELRTPLN
Sbjct: 628 GNQTALKELRSQTNALAKESNAHEQTSSALQVAKEVAEAANEAKSRYLAGLSHELRTPLN 687

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG+++++  +   P      +E IG + R+G+HL +LI  +L++S+IEAGR  L    
Sbjct: 688 VLLGYAQLLSRDPALPF---KQREIIGIVKRNGEHLADLIEGLLEISKIEAGRVNLQRDE 744

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
            +L  I+++ + M Q++A +K ++ +    P+L   V  D++ +RQ+++NL+SNA+K+T 
Sbjct: 745 FNLKAILQQLVDMFQMQASKKRLKFYYLASPNLPDYVATDKQRLRQILINLISNAIKYTE 804

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   V + S    + S+ D GPGI++     +   F Q       A  G GLGL I
Sbjct: 805 Q-GSVTFKVTYRSE-VAHFSVIDTGPGISKSNQELIFKPFEQIRNDHTKAISGTGLGLTI 862

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           ++S+    GG+  + S + +G      L   ++     E      Q   Y+
Sbjct: 863 SRSLAELMGGEISLTSSIGQGSTFNFRLMLFKLHKDPKEPEFNKLQATGYS 913


>gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 674

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++ +  ++     ++ +E  N AKS FLA+MSHE+RTPLN ILG  +++E   +   
Sbjct: 271 RDISQRKQLETQLRHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDL--- 327

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E     +  +  SG+ LL LIN+ILDLS+IE G   L  +   L  +++E   +    
Sbjct: 328 -TEMQHWCVNILGNSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFS 386

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A  K I +      SL   V  D   +RQV+LNLL NA+KFT   G V ++    +    
Sbjct: 387 ALAKGITLRGHFSESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQ-GFVELSAQTMAEDEI 445

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D+GPGIA+     +   F Q   +      G GLGL I++ ++    GQ  + S+
Sbjct: 446 CFSVFDSGPGIAKERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESR 505

Query: 462 LREGVEVIAIL-----PNTRVLNFI 481
           L +G      L     P  R+    
Sbjct: 506 LGKGSRFYFSLNLPQAPTERIPPPS 530


>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 874

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                I   + +   +           ++E    +    E +++AE  N+AKSRFLA MS
Sbjct: 326 GALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEAKEQAEAANMAKSRFLAVMS 385

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ILG   ++    +    +   +E++     S + +L L+N+ILD S+IEAG
Sbjct: 386 HEVRTPMNGILGMLGLLNDRRL----DGQQQEWLATAQESAESMLTLLNDILDFSKIEAG 441

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
             EL +SA S   I++    +   RA  K I +  +   +L   V  D   +RQV++NL+
Sbjct: 442 HLELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWVQGDPGRLRQVLMNLV 501

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SN +KFT  GG V + V   + R         ++D+G GI   ++  +   F Q   +  
Sbjct: 502 SNGIKFTHQGG-VTMRVAQQAKREDSLLLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYS 560

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
               G GLGL I + ++   GG+  + S    G                P+D 
Sbjct: 561 RKYGGSGLGLAICRHLVDLMGGEIRLESPPSGGSRFTFT--ARFGYAHAPQDE 611


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 186  DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            ++  A      L     +      S    L  +  +  +    E         +  AEE 
Sbjct: 1456 NLVPAAFTTDRLQALNILAGQAAISIENALVYETLEKRVTDRTEELNV----AKVLAEEA 1511

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NAI+G S +     +        K+++  I  S + LL +I
Sbjct: 1512 NRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPLNL----DQKDFMDKILESAEGLLGII 1567

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
            N+ILD S+IEA +  L ++   L  ++   + +  L+A+EK +E+   ID  + ++   D
Sbjct: 1568 NDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALELHVDIDSDVPALLLGD 1627

Query: 365  EKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVL 421
               ++Q++ NL+SNA+KFT  G   + V++  T          + D+G G+ +     + 
Sbjct: 1628 PLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQVRFDVTDSGVGLTQEHQRELF 1687

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q   +I     G GLGL I + ++    GQ  +RS L +G      +P 
Sbjct: 1688 KPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRSHLGKGSTFGFRIPV 1740


>gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 774

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  I+  L +             + ++E     +     ++ AE  + +KS FLA MSHE
Sbjct: 189 YVRISVSLLRDANGDPQFFVAHIEDVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHE 248

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA+LG +E++E   +        KE++  I  SG+ LL +IN+ILD S++E+G  
Sbjct: 249 IRTPMNALLGMAELLESTALTV----QQKEFVSIIRSSGKTLLTIINDILDFSKVESGNL 304

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW-ADEKGMRQVILNLLS 377
            L E  + L + + + +I+   +A EK++ +   ++P ++ +V+  D   MRQ++ NL+S
Sbjct: 305 VLEEGYLDLYECIEDVLILFSNQADEKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLIS 364

Query: 378 NAVKFTAIGG-RVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           N++KFT  G   +HVT+                   ++KD G GI + ++  +   F Q 
Sbjct: 365 NSIKFTKKGEISIHVTISPIEAEALSEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQV 424

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482
             ++     G GLGL I + ++   GGQ  + S+L           LP        P
Sbjct: 425 DSSVTRKHGGTGLGLSICKRLVELMGGQMWVESELGCSSTFHFSIQLPAYENACQTP 481


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGHERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L+    D 
Sbjct: 625 TRFSVDLPLSPALDAGEADE 644


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGHERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L+    D 
Sbjct: 625 TRFSVDLPLSPALDAGEADE 644


>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 924

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 17/360 (4%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGM 192
              +     ++++L  +A+    L          +V+A   L      +    ++     
Sbjct: 172 RALLISGIVIILSLVFAAILALRLSRMFMTPLNKLVLATDKLVEGKRSTGLNDNMIGEFE 231

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKS 250
           L          T  + K  ++    QA  D  + + + E +       +K A++ N  KS
Sbjct: 232 LLREGLNTIAHTMVMQKDEMQKNIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKS 291

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHELRTPLN ++GF+  +    +        K+Y+  I  S   L+ +I++ILD
Sbjct: 292 DFLAKMSHELRTPLNGVIGFTRQLYKTPLNKH----QKDYLDTIMLSANSLMTIISDILD 347

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
            S++EAG  EL      L D V E + +L   A +K +E+   I+  +   +  D    +
Sbjct: 348 FSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFK 407

Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           QV++NLLSNA+KFT  G  +V ++            +S+ D G GI   +  ++ T FGQ
Sbjct: 408 QVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGVGIPMDKQDSLFTPFGQ 467

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----AILPNTRVLNFIP 482
              +I     G GLGL I + I+    G+  + S    G          LPN    N +P
Sbjct: 468 ADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGNGTCFTFNSVFSLPNHVFTNDLP 527


>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
 gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
          Length = 926

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 9/267 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +     +  +L     + AE ++ AKS FL+ MSHE+RTP+NAI+G +++   E   P  
Sbjct: 532 MSVRSRMRNALLQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDLTCKERDVP-- 589

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++ +  I  S Q+LL LIN+ILD+SRIE G+ E+ +   SL  +++E   M+  +A
Sbjct: 590 -PEIEKKLKKIRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQA 648

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           ++K +E       S   +  D   +RQV++NLLSNAVKFT  GG+V + V   S   +  
Sbjct: 649 EQKGLEFQVDFYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEME 708

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S++D G GI   +   + +SF Q   +I  +  G GLGLPI+++I    GG   ++S
Sbjct: 709 YRFSVQDTGVGIPYEDQERIFSSFEQLRPSISHSA-GTGLGLPISRNIARLMGGDLEVKS 767

Query: 461 KLREGVEV--IAILPNTRVLNFIPEDN 485
           +  +G E       P    +   PE  
Sbjct: 768 EPGKGSEFYMTLRFPKGANVPPSPEPA 794


>gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 614

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/268 (36%), Positives = 154/268 (57%), Gaps = 1/268 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +   D     AE  + AK+RFLA+MSHELRTPLNAI+GFSE++  E    L
Sbjct: 324 RDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGFSEMMVQEDALSL 383

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    KEY   I+ SGQHLL+++N ILD+S++E+G +E+     +  +++     +L L+
Sbjct: 384 DAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPREVLLNSSNLLALK 443

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++  IE+  ++   L  +  D +  RQ++LNL+SNAVKFT  GGRV ++     G    
Sbjct: 444 ARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVTISA-RVEGSRMV 502

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + DNG GIA+ ++  +   F Q     +   +G GLGL I +S++A H G+  ++SK+
Sbjct: 503 LRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVALHRGEIDVQSKV 562

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
            EG  V  +LP T V      +   ++ 
Sbjct: 563 EEGTTVTVMLPLTFVPGVDVSEAEPASD 590


>gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 595

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 130/240 (54%), Gaps = 7/240 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TP+ ++ GF+E +    M   +  T +E++  I+    
Sbjct: 360 RRLE---QIRSEFVANVSHELKTPVTSVKGFAETLLDGAM--YDEATLREFLKIIYDESD 414

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI++ILDLSRIE  R  L    ++++D+V E +  ++ R ++K +E+         
Sbjct: 415 RLHRLISDILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKRIEKKQLELVL-PQKRHV 473

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD+  +RQ++LNL++NA+ +T   GR+ +++         I + D G GI+E ++P 
Sbjct: 474 MMEADKDRLRQILLNLVTNAIAYTPDKGRIEISLIERENELDLI-VSDTGIGISEKDLPR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A      G GLGL I + ++ ++ G+  + S+  +G   I  LP T+   
Sbjct: 533 IFERFYRVDKARSRQSGGTGLGLAIVKHLVESYHGKIRVESEEGKGSTFIVTLPRTQTRP 592


>gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 9/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +     +    +          I +L+  +    ET+ +AE  N AKS FLA+MSH
Sbjct: 214 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 273

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNA+LG++++++           + EY+  I+RSG+HLL+LIN++LD+S+I+AG 
Sbjct: 274 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLDIINRSGEHLLSLINDVLDMSKIDAGH 330

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +     +  ++  E   ++Q++A +K + +  +++ S+   V  D    RQV++NLL 
Sbjct: 331 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 390

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     +               + D G GI+E     V   F Q    I   
Sbjct: 391 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDTGIGISEENQERVFQPFEQLDSDITQN 450

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I++  +   GGQ +++S+L  G      L
Sbjct: 451 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 486


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1786

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I R+
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K IE+   + P+
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
            +   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G G+
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             E +   +  SF Q   +      G GLGL I + ++   GG+  + S+   G      
Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 12/244 (4%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA MSHE+RTPLN ++G  ++++  ++    ++  K Y+     S   LL LIN+IL
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSL----DDRQKRYVTICRSSADTLLGLINDIL 666

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           DLS+IEAGR EL+     L  +V +   M   RA+ K +E+   I P +   +  D + +
Sbjct: 667 DLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERL 726

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           RQ+++NL+ NA+KFT++ G V + V      T      I +KD G GI+  +   +   F
Sbjct: 727 RQILVNLVGNALKFTSV-GYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQQQKLFQPF 785

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIP 482
            Q  +       G GLGL I + +     G   I S +  G      LP     V    P
Sbjct: 786 TQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPLTSAEVSKVAP 845

Query: 483 EDNH 486
           E   
Sbjct: 846 EHEP 849


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 24/307 (7%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++   Y +        +  + QA ++     +E   +      ++ EE  LAKS FLA+
Sbjct: 135 LIARLRYHSKAFLGQLQRDEAYQALRESQKQLVEK-NASLVALNQKLEEATLAKSEFLAN 193

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N ++G + ++    +     +  +EY+     S   +L +IN+ILD S+IE
Sbjct: 194 MSHEVRTPMNGVIGMTALLLDTEL----TDEQREYVEATRSSADAMLTIINDILDFSKIE 249

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374
           +G+ +L      L   + E + +L  +A EK++++   +D ++  +   D   +RQ+++N
Sbjct: 250 SGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVN 309

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR-----------------GQYISIKDNGPGIAEGEI 417
           L+ NAVKFT   G V + V                           S++D G GI   + 
Sbjct: 310 LIGNAVKFTNE-GEVFIQVKPAPKHFNDRDRSASSITGPDMWMLQFSVRDTGVGIPIDKQ 368

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  SF Q   +      G GLGL I + +    GG   + S   +G      +     
Sbjct: 369 HRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFHFTIQARAT 428

Query: 478 LNFIPED 484
            + IP  
Sbjct: 429 ASVIPPA 435


>gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 361

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298
           +R E     +S F+A++SHELRTPL +I GF E +     G ++N   ++ ++  I    
Sbjct: 127 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 180

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  LIN+IL LS IE  +    +  I L + + + + ++   A+ KNI + + ++ + 
Sbjct: 181 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 240

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  ++    Q+++NL+ N +K+T  GG V V+     G    I+++DNG GI++  IP
Sbjct: 241 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIITVEDNGIGISKENIP 299

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F +   +      G GLGL I + I+ +  G+  + S++  G + I   
Sbjct: 300 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 353


>gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 635

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE++    +   
Sbjct: 256 HDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIM----VLTE 311

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N E   EY+  I ++   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 312 NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLK 371

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             + N+++             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 372 -MKLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTET-GSITLGLKQ-EGDWLK 428

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI E ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 429 LFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVSSEL 484

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
            +G      LP       IP +  E +
Sbjct: 485 GQGSTFALYLP----YQEIPVEVAERS 507


>gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 774

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/271 (40%), Positives = 163/271 (60%), Gaps = 3/271 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   L+ +AE++     +E+ +    ET +RAE  N AKS FLA+MSHELRTPL
Sbjct: 500 RLMATIHDLSLARRAEQERGQELVELNRKYMRET-ERAESANRAKSEFLANMSHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+++    GPL +E Y+EY+ DI+ SG +LL +IN+ILD+S+IEAG++ +   
Sbjct: 559 NAIIGFSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRE 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +I L +++RE + ++ L+A +KNIE+   +  SL S+ AD + ++Q+++NLL NAVKFT 
Sbjct: 619 SIDLSEVIRETMRVVTLQAGKKNIELTSDVPASL-SLHADRRAVKQILINLLFNAVKFTG 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGRV +           ++IKD G GI    +  +   F Q       +  G GLGL I
Sbjct: 678 QGGRVTLRARVV-SNSLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++S+   HGG   IRS    G  V   LP  
Sbjct: 737 SRSLTELHGGALRIRSTEGVGTIVSIRLPVQ 767


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 7/335 (2%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              +++     +  F     + ++  P    L        +  +I           F   
Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERFLQAWYFEQGNDAEIIAPLPPQVNELFIRV 317

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE--ENLAKSRFLASMSH 258
           +     +S    L  +     +    +           R   EE   +  +  F+A++SH
Sbjct: 318 VREEKEQSIELSLQGRTWVILMTPLYDKTNVRGAVAVLRDMTEERRLDKLRKDFIANVSH 377

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTP+  + G+SE I  +      +E  KE    I+     +  L+N++LDL+R+EAG 
Sbjct: 378 ELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGH 435

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L+   + L   +   I   Q  A+EK I++  + D     +  D   + QV+ NL+ N
Sbjct: 436 ITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIRIRMDPDRIEQVLTNLIDN 495

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A++ T   G V + +   +G G  I ++D+G GI E ++P V   F +   A      G 
Sbjct: 496 AIRHTDQNGTVKI-IAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFYKADKARTRGRSGT 554

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL IA++I+  H G   + SKL EG      LP
Sbjct: 555 GLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589


>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 1272

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +AE    AKS FLA+MSHE+RTP+NA++G + +     + P   
Sbjct: 486 ITHRKKMEEELIVARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTP--- 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  I  S   LL +IN+ILD S+IEAG+  +     +L +++     M+ ++ +
Sbjct: 543 -KQRDYLHKIQISANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLR 601

Query: 345 EK-NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           EK  IE+       +   +  D   + Q+++NL +N++KFT   G + V+    S     
Sbjct: 602 EKEGIEVLFDTGADVPRQLVGDPLRLSQILVNLANNSIKFT-ESGEIVVSTKVVSQGNHV 660

Query: 403 I----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           I    S++D G G+ E  +  + T+F Q   +I     G GLGL I Q ++   GG+  +
Sbjct: 661 IVLQFSVRDTGIGLTEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWV 720

Query: 459 RSKLREGVEVIAI 471
            S   +G      
Sbjct: 721 ESIYGKGSTFYFT 733


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++   ++    E R  AE+    K  FLA+MSHE+RTPLNA+LGFSE++E   +    +
Sbjct: 335 ISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTNL----D 390

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++  I  +G++LL ++N+ILD+S+IEAG  +L     S+  +      M Q  A 
Sbjct: 391 ADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAAT 450

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K +++  ++DP+L +V   D   + Q++LNL++NA+KFT   G V + +     +    
Sbjct: 451 DKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQ-GSVTLLIEQGERKTSAS 509

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G G+A   +PT+   F Q          G GLGL I +S+     G   +
Sbjct: 510 IPVRFIVQDTGIGMAREALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQKGSVSV 569

Query: 459 RSKLREGVEVIAILP 473
            S L +G      +P
Sbjct: 570 ESTLGKGSRFTVEIP 584


>gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 909

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 179 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 238

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 239 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 298

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN+ILD
Sbjct: 299 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 354

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 355 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 414

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 415 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 474 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 529

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 530 IEKNQTHRFA 539


>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1234

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++ P   
Sbjct: 698 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S   LL +IN+ILD S+IEAG+ EL   A  L  ++   + +  L+AQ
Sbjct: 755 -QQKDYLEKAGFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 813

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+      +   +   D   + QV++NLLSNAVKFT   G + +       R   I
Sbjct: 814 EKGVELLLYAPVTAGLILEGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    I+D G GI++ +  T+  +F Q   +      G GLGL I++ +++  GG   + 
Sbjct: 873 TLKFWIRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVE 932

Query: 460 SKLREGVEVIAIL 472
           S++  G      +
Sbjct: 933 SEMSVGSTFSFTI 945


>gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3]
          Length = 1287

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 795

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 112/284 (39%), Positives = 162/284 (57%), Gaps = 7/284 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + S QAE     AEL           +RAE  + AKS FLA+MSHELRTPL
Sbjct: 503 KRLMATIGDLTSSQAELKRKAAELSELNMDYQVETERAEAASRAKSEFLANMSHELRTPL 562

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSEV++    GPL ++ Y EY  DIH SG HLL +IN+ILD+++IEAG+ +L   
Sbjct: 563 NAIIGFSEVLQARMFGPLGSDKYGEYADDIHNSGIHLLTVINDILDMAKIEAGQMQLERE 622

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L  +++E + ++ ++A++K+I + Q+I   L S+ AD + M+Q++LNLLSNAVKFT 
Sbjct: 623 DVDLAPLLKETLRLVAIQAEQKDIRVDQRISAKL-SLNADRRAMKQILLNLLSNAVKFTE 681

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG++ V    T      ++I+D G GI +  +  +   F Q       +  G GLGL I
Sbjct: 682 PGGKILVRARKT-SCAVTLTIEDTGIGIPKALLNRIGQPFEQVQNQFSKSTGGSGLGLAI 740

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           ++S+   HGG   +RS    G  V   +P        PED   S
Sbjct: 741 SRSLAELHGGAMKVRSIEGMGTIVSVRVPI-----NCPEDQPSS 779


>gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 498

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 11/276 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +    ++     E           R  AE  N  K  FLA++SHELRTPLNAILG++ +
Sbjct: 226 AIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGL 285

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  + + P   +  +  +  I R+ +    LI+++LD+SRI  G   L+   + L  I+ 
Sbjct: 286 LRRKQLSP---DKVQRALEVIERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIIN 342

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             I  LQ  A  K+I+I   ++PS + +  D   ++Q++ NLLSNA+KFT   G+V + +
Sbjct: 343 AAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVKIYL 402

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            W       I ++D G G++    P +   F Q   +I  +  G+GLGL I + ++  HG
Sbjct: 403 EWLE-NAVQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSHGGLGLGLAIVRHLVELHG 461

Query: 454 GQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHES 488
           G     S    +G   I  LP        P+ + ES
Sbjct: 462 GTVWCESDGDGKGATFIVELPLK------PQADAES 491


>gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1014

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/259 (33%), Positives = 134/259 (51%), Gaps = 12/259 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 630 ITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 685

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  I  +   LL LI++ILDLS+IEAG  E   S + L  +++E    LQL+ +
Sbjct: 686 EEKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIK 745

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
            + +++          V  ++  + Q+I+NL++NA+KFT  G    +  G+   G+  Y 
Sbjct: 746 SEAVKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGS---IRFGYELRGKELYF 802

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA+ E  ++   F +      S  QG GLGL I Q+++ + GG   + S+  
Sbjct: 803 YVADTGCGIAKDEQESIFGRFVKL----NSFAQGTGLGLSICQTLVNHMGGHIGVESEKG 858

Query: 464 EGVEVIAILPNTRVLNFIP 482
           +G      LP        P
Sbjct: 859 KGSTFWFTLPYEAASTAEP 877


>gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146]
 gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella
           ictaluri 93-146]
          Length = 918

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 25/360 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LLI++ I+ L ++ L   V     P+   ++T   +    LD  + G     L
Sbjct: 172 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     + M    + T  +Y+  I RS  +LL +IN
Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVMKTPLSATQIDYLHTIERSANNLLTIIN 341

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EAG+  L      L + + E   +L   A +K +E+   +   +   V  D 
Sbjct: 342 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHVLGDP 401

Query: 366 KGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             ++QV+ NLL NA+KFT  G    R+ +    +      I + D G GI+E +   +  
Sbjct: 402 MRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDTGIGISERQQSQLFQ 461

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   +I     G GLGL I Q ++   GG     S+  +G      +      N  P
Sbjct: 462 AFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAPP 521


>gi|119486633|ref|ZP_01620683.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119456250|gb|EAW37382.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 536

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 152/338 (44%), Gaps = 26/338 (7%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
               +  +F  +V+A+    +++  +  +          S F           +  L+  
Sbjct: 199 FFSLLISAFLGLVLAVYISWVIAYPIATMIKVANQVGEESDFAIQIPVTTDDEIGELTYA 258

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              + LI  +       ++ +  AE  N +KS FLA+MSHELRTPLNAI+G+SE++  E 
Sbjct: 259 --LNHLIQRVAEYTEELEKAKVLAESANRSKSVFLANMSHELRTPLNAIIGYSEMLHDEA 316

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI-DIVRECII 337
                ++   + +  I  +G+HL ++I++ILD+S+IEAG   L     S+   ++++ I 
Sbjct: 317 DDLGCHDFLPD-LEKIQTAGRHLRDMISDILDISKIEAGHVTLYLEDFSVEKQLLKDVIT 375

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +  A++    +  +I   +  ++AD   +RQ++LNLLSNA KFT   G + + V    
Sbjct: 376 TTKPLAEKNRNTVKIEIKNEIGQMYADLPKVRQILLNLLSNACKFT-QDGVITIVVKRVK 434

Query: 398 G---------------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
                                 +     + D G G+++ +   +  +F Q   +      
Sbjct: 435 SKPSSTRRTLSSGSRFGGNQMQQYLIFKVIDTGIGMSDEQQKLIFKAFTQADASTTKRFG 494

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL I+Q +    GG   + S+  +G   I  LP 
Sbjct: 495 GTGLGLAISQRLCEILGGGITVESQEGKGSTFIVWLPV 532


>gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 894

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 13/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    + 
Sbjct: 488 ITEMERMKRELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    Y   +  + + LL LINEILDLS+IEAG  E + + + L  + +E       R  
Sbjct: 544 DERLNYYEIVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +E+  +       +  D+  + QV+ NL+ NA KFT   G++        G      
Sbjct: 604 Q-GVELIYESSDEGIVIDGDKNRLFQVVSNLIGNAFKFT-TNGKISYGYHR-EGDYVVFH 660

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GIA  ++  +   F +      +  QG GLGL I ++I+   GG   + S++ +
Sbjct: 661 VNDTGSGIAADKLDRIFERFVKV----NTFAQGTGLGLSICKTIIERMGGNISVSSEIGK 716

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           G     ILP          +  E ++ + 
Sbjct: 717 GTTFTFILPL--TAPQKEGEVQEDSEERV 743


>gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1297

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E   A       R   E  N  K  FLA +SHELR+PLN ILG++++++   +  L  
Sbjct: 898  IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL-- 955

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                + +  I R+ +    LI+++LD+SRI  G+  L+   + L+  +   +  ++L A+
Sbjct: 956  -KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAE 1014

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             K+I I   +  S+  V  D   ++QV+ NLLSNAVKFT  GG + V +    G   +I 
Sbjct: 1015 SKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERV-GSLAHIQ 1073

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
            ++D G GI+   +P V   F Q          G+GLGL I + ++  HGG   + S    
Sbjct: 1074 VRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGEG 1133

Query: 464  EGVEVIAILPNTRVLN 479
             G      LP   V  
Sbjct: 1134 LGTTFTVKLPLVAVSQ 1149


>gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           NCTC 11218]
          Length = 1268

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 11/272 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    +    E ++ AE+ N AKS FLA+MSHELRTP+NAILG  ++ +   +    N
Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+     + Q LL L+N+ILD S++EAG+ E+ +   SL +++ E  I+L    Q
Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K++EI  +ID  + + +  D   +RQ++LNL  NA+KFT   G V V++   S  G   
Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEA-GEVKVSIQTESHDGDRC 683

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D G G+ E +   V   F Q   +I     G GLGL I + ++    G   ++
Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDNHESTQ 490
           SK   G E    +    V     PE + E   
Sbjct: 744 SKQGVGSEFSFTVNLGCVDEERQPEPSAELPD 775


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 8/247 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHELRTPL ++LGF+E++  + + P   E  + YI  I++    L  
Sbjct: 583 EIDQMKSEFVSTVSHELRTPLASVLGFAELLLTKKLKP---ERQQRYIATIYQEATRLTA 639

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LDL R+E+GR       +++  ++R+   + ++++     E+  + + ++  V  
Sbjct: 640 LINDFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTV--VSG 697

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + QV LNL+SNAVK++  GG V V      G    + ++D G GI    IP + T 
Sbjct: 698 DQAKLHQVFLNLISNAVKYSPHGGHVRVGC-RQDGNRLLVEVQDEGLGIPSEAIPHLFTK 756

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR--VLNFI 481
           F +   + +    G GLGL I Q I+  H G+  + S+  +G      LP     +    
Sbjct: 757 FYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLPLAEHDLSPGY 816

Query: 482 PEDNHES 488
           P  + E+
Sbjct: 817 PAGSEEA 823


>gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 786

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++   A+    E ++ AE  +  KS FLA+MSHELRTPLNAI+G+SE++  +     N 
Sbjct: 248 ISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDAADDGNT 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I  +G+HLL LIN+ILDLS+IEAGR ++    + L  +V E   ++    Q
Sbjct: 308 AMVAD-LDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTIVGPMMQ 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRG 400
           +   ++  +    + ++  D   ++Q ++NLLSNA KFT   G V + +   +       
Sbjct: 367 KNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKE-GTVTLRISRDAMPDGSSA 425

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+G G+ E ++  +  +F Q   +      G GLGL I +  +A  GG   + S
Sbjct: 426 IRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGGTIAVAS 485

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   G      LP       +P +  E
Sbjct: 486 EAGRGSTFTIELPVD--AKGLPAEAGE 510


>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 761

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 11/249 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      R+RAE  N AKS FLA+MSHE+RTP+N ++G +E++   T+     E  + Y 
Sbjct: 199 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTTL----TEEQRLYA 254

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA +  L   A  L   + E +++LQ  A++K + + 
Sbjct: 255 NTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVMLLQANARDKGLTLL 314

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405
              D  + +    D   +RQ++ NL+ NA+KFT   G V   V             +ISI
Sbjct: 315 VDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNE-GHVTARVTGVPHPEDNTVMLHISI 373

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D+G GI + +I  +   F Q         +G GLGL I + ++    G+  + S+L +G
Sbjct: 374 EDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDGEIWVESQLGKG 433

Query: 466 VEVIAILPN 474
                 LP 
Sbjct: 434 SCFGFRLPL 442


>gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1287

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
 gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
          Length = 936

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++   + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEELS--- 743

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  +   LL LI++ILDLS+IEAG +E +   + +  +  + +  + ++A+
Sbjct: 744 -ERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKAK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
              +E+       +  V +D   + QVI N ++NA+KFT+ G    + VG+         
Sbjct: 803 G-EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG+  + S+  
Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914

Query: 464 EGVEVIAILPNTRVLNFI 481
           +G      +P   V   +
Sbjct: 915 KGSRFWFTIPGVIVTEEV 932


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 148/334 (44%), Gaps = 33/334 (9%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                + L  Q  +     D+ +             +     K    +     E   ++A
Sbjct: 90  TAVQALRLGAQDYLFKPFDDLEMVIATVNKALERRRLVEERDKLVRTLTDLAIENGRILA 149

Query: 227 ELEVAKSLSDE--TRKRAE--EENLA---------------------KSRFLASMSHELR 261
           E     S  +E   ++ AE  + NL                      KS+FLA+MSHE+R
Sbjct: 150 ECRRVNSSLEEKVAQRTAELSKSNLQQKAIIAELHEAKEAAEAANRAKSQFLANMSHEIR 209

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N +LG +E++    +    +E  K Y+  +H+SG+ LL +IN+IL++S+IEAGR E+
Sbjct: 210 TPMNGVLGMAELLLHSEL----DEKQKSYVKILHQSGESLLGIINDILNISKIEAGRLEI 265

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L +  R  + + +   + K + +  +I+  +   V  D   +RQV++N+++N +
Sbjct: 266 ERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRLRQVLINVVNNGL 325

Query: 381 KFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  G    RV +   + +G+     +KD G GI    I  +   F Q   +      G
Sbjct: 326 KFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFAQVDGSTTRKYGG 385

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL IA+ ++   GG   + S+  +G     I
Sbjct: 386 TGLGLAIAKQLVELMGGAIGVESEPGQGSTFTFI 419


>gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
 gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942]
 gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
          Length = 754

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 4/235 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA+MSHELRTPL  ++G S  +     GPL  E  +EYI  IH SG+HLL LIN+I
Sbjct: 384 KGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLT-ERQREYIKAIHDSGEHLLELINDI 442

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSSVWADEK 366
           LDLS+IEAG+  L     SL  +  + +  LQ +A+  E  + +  +++  +    AD K
Sbjct: 443 LDLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPK 502

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQ+++NLLSNAVKFT   G V + V W  G      + D G GI E E   +   F Q
Sbjct: 503 RLRQILINLLSNAVKFTEPQGTVFLRV-WREGDRAIFQVSDTGIGIPESEQAQLFQKFQQ 561

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              +I+    G GLGL + + ++  HGG   I S + +G      +P   ++  +
Sbjct: 562 LDTSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIPEQTLIEPV 616


>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 932

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 8/278 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 355

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        + + E I +    A EK +EI  K+DP +   +  D   ++Q++ NL+
Sbjct: 356 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 415

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            N++KFT  G   V V +   SG    +   ++D G GI+E +   +  +F Q   +I  
Sbjct: 416 GNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 475

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I Q +++  GG+  + S+L +G      
Sbjct: 476 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I+  +   + ++  LE  +   ++ R  A E    K  F A++SHE+RTPLN ++G  E
Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILE 296

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   +    N   +EY+     SG+ LL LI  ILD SRIE+G+++L      L +I+
Sbjct: 297 LLKNMGL----NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEIL 352

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + I +L  +AQ K +E+   +  ++  S+  D   +RQ+++NL++NAVKFT   G V +
Sbjct: 353 DDVIGLLAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDR-GEVSI 411

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V     +      +  ++D G GI       V  +F Q   +      G GLGL I + 
Sbjct: 412 EVSLLEKKAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           ++   GG   + S   +G       P        P++
Sbjct: 472 LVDLMGGDIGVESGSGKGSIFWFTAPLEE--TSAPQE 506


>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
 gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
          Length = 870

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 12/269 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    + +  L    ++RAE  N AKS FL+ MSHE+RTPLN I+G  E+          
Sbjct: 327 LRRSEKRSSELLRTEKERAETANRAKSDFLSQMSHEIRTPLNGIMGMVEL---GKHHIEE 383

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +  +  I  S  HLL+LIN+ILD+S+IE+G+ EL      L  ++R    +  ++A
Sbjct: 384 PDRMRNCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQA 443

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           + K I+    +   L   +  D   + Q++ NLLSNA+KFT   G V + V         
Sbjct: 444 KNKQIDFQIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENG 503

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GIA   +  V  +F Q +  I     G GLGLPI ++ +   GG   +
Sbjct: 504 IWLRFEVRDTGRGIAPENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVTV 563

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S++  G      LP +    + PE+  E
Sbjct: 564 SSEIGAGSVFTVDLPFS----YEPENESE 588


>gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS]
          Length = 1284

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 680 EMDELKRKINKMVSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 739

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 740 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 796

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 797 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 855

Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                 S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 856 TISKSTRELCQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 915

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 916 SKRLVNLMGGDVWVTSEFGHGSTFHFT 942


>gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHEL+TPL +I+G+ + I        ++ T K ++  I      
Sbjct: 362 ELRRLEQLRKEFVANVSHELKTPLTSIIGYIDTIIDN--DIKDDTTIKRFLSIIKDEADR 419

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI ++LDLS++EA R E+      L  IV++  +MLQ +A+ K+I++   I   L  
Sbjct: 420 LYLLIKDLLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPF 479

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+   + + QV++NL+ N +K+T  GGRV +   +       + ++DNG GI E +   +
Sbjct: 480 VYLIPEQIEQVLINLVDNGIKYTEPGGRVILRA-YEENNRVVVEVEDNGIGIPEEDQGRI 538

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   +  G G+GL I + I+ NH  +  + S+  +G      L
Sbjct: 539 FERFYRVDKARSRSMGGTGIGLSIVKHIIKNHDSEIKVESEPGKGSLFRFYL 590


>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1235

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  NL+KS FLA+MSH
Sbjct: 672 WLLSRGRVVEYTVDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ +   +        ++Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAQRTELTA----KQEDYLDKAGFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL + A  L  ++   + +  L++Q+K +E+      +   +   D   + QV++N+LS
Sbjct: 788 LELEKVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +  ++  +F Q   +   
Sbjct: 848 NAVKFTQT-GEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GGQ  ++S++  G      +
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945


>gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 1045

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 833

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP        P +  +
Sbjct: 890 GSRFWFTLPFQPKKELFPSEEQK 912


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 132/278 (47%), Gaps = 32/278 (11%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +   + RK A+  N+AKS FLA+MSHE+RTP+NA++G + ++   T+        ++++
Sbjct: 1013 NTALKQARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDN----QQRDFV 1068

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG  LL LIN+ILD S+IEAG+ E  E   SL   + E + ++  RA +K +E+ 
Sbjct: 1069 ETIRSSGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELA 1128

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------------- 394
               DPS    +  D   +RQ+++NLL+N VKFT   G V + V                 
Sbjct: 1129 YLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFTEQ-GEVVIYVQDITDTDITQPETTSQR 1187

Query: 395  ------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                      R     ++D+G GI    +  +  SF Q   +      G GLGL I +S+
Sbjct: 1188 KNFTDIQNQRRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSL 1247

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                GG+  + SK   G      +     +   PE  +
Sbjct: 1248 SQMMGGRIWVESKAGVGSSFFFTI----AVPVAPEGEN 1281


>gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 919

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +++  E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 671 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 726

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EYI  +  +   LL LI++ILDLS+IEAG +E +     +  +  + +   Q++  
Sbjct: 727 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 786

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  IE+     PS  +V +D   + QVI N ++NA+KFT+  G +HV             
Sbjct: 787 Q-GIELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 843

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI++ ++  +   F +      S   G GLGL I +SI+   GG   + S+  +
Sbjct: 844 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 899

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 900 GARFWFTIP 908


>gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris]
 gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Paris]
          Length = 910

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN+ILD
Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 531 IEKNQTHRFA 540


>gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 910

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN+ILD
Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 531 IEKNQTHRFA 540


>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
 gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 1374

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 19/288 (6%)

Query: 210 SNVKILSCQAEKDDL---------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            N+ + + + E+D L         I     A+   ++ +++A+E N AK+ FLA+MSHE+
Sbjct: 602 VNLVVTAMRDEQDQLLGYLGVATDITRQRQAQDALEKAKRQADEANEAKTMFLANMSHEI 661

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NA+LG  +++    + P        +    H +   LL L+N+ILD S+I+AG+ E
Sbjct: 662 RTPMNAVLGMLQLLLRNNLTP----RQHAFASKAHIAATSLLGLLNDILDYSKIDAGKLE 717

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNA 379
           L         +++   IM     + K+IE+   +DP L   +  DE  ++QV++NLLSNA
Sbjct: 718 LDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDLDPQLSPYMIGDELRLQQVLINLLSNA 777

Query: 380 VKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT  G  +  TV        +   IS+ D+G GI+  +   +   F Q   +      
Sbjct: 778 IKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGIGISPEQQTRIFGEFIQAEASTTRRYG 837

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IAILPNTRVLNFIP 482
           G GLGL I + ++    G   + S L +G         P    + ++P
Sbjct: 838 GTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSLTLTFPRDTTVEWVP 885


>gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 7/261 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           DL A++E   +        A + N AKS+FLA++SHE+RTP+N ++G + ++   ++   
Sbjct: 48  DLEAQVEERTAALKTAMSDAVKANEAKSQFLANISHEIRTPMNGVIGMATLLLDTSL--- 104

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  + Y   I  S   LL +IN+ILDLS++EAGR ELS     L D++   + +L   
Sbjct: 105 -SDNQRHYATTIRESSDALLTIINDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPA 163

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRG 400
           A  +++++   +   L +SV  D   +RQ++LNL  NA+KFT   G V V V    S   
Sbjct: 164 AISRSLDLVSFLPMELQTSVVGDAGRLRQILLNLAGNALKFTDK-GTVAVRVSEAKSSGK 222

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I+D G GI + ++PT+   F Q   +      G GLGL I + +++  GG+  ++S
Sbjct: 223 VRFEIEDTGIGIPQDQLPTLFDKFVQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQS 282

Query: 461 KLREGVEVIAILPNTRVLNFI 481
           + REG      LP  +    +
Sbjct: 283 EEREGSLFWFELPLLKDDQQL 303


>gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
 gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
          Length = 1287

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 720

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +    + + +AEE N  KS FLA++SHE+RTPLNAI+GFS ++     G   +
Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  I  +   LL LI+++LDLS+IEAG  E   + + +  +  E     +LR +
Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNK 588

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  I I      +   V AD   + QV++NL++NAVKFT   G +            +  
Sbjct: 589 KSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  +  +  +F +      S  QG GLGL I ++I+   GG+    S+L +
Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 704 GSTFWFTLP 712


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 918

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L+    D 
Sbjct: 625 TRFSVDLPLSPALDAGEADE 644


>gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1927

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 136/254 (53%), Gaps = 14/254 (5%)

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             +  ++   + ++ A+  N AKS FLA+MSHE+RTP+NAILGF +++             
Sbjct: 1417 EKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGFCDLLNHLVTDNRG---- 1472

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            + Y+  I  +G+ LL LIN+ILDLS+IEAG+ +L    ++L  +++E   +   +A+EK 
Sbjct: 1473 QFYLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTLIQEIYQIFSQKAEEKQ 1532

Query: 348  IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG-- 400
            I++  +ID S+ + +  DE  +RQ++ N++ NA+KFT   G V +++      T  +   
Sbjct: 1533 IKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEE-GYVKISLNSYHSETQDQEDS 1591

Query: 401  --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                I+I+D G GIA  +   +  +F Q          G GLGL I + +    GG+  +
Sbjct: 1592 ITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLAITKRLTTILGGKIEL 1651

Query: 459  RSKLREGVEVIAIL 472
             S+  +G       
Sbjct: 1652 YSQPNQGSIFSFTF 1665


>gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 630

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 165/397 (41%), Gaps = 10/397 (2%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
            +A   +L            +     I L+   ++ G     L L        E L  Y 
Sbjct: 94  CFAVARALLAACPPRPRDGLKREREAIVLVRPVLSGGERVGTLVLAASVPSIREVLGQYL 153

Query: 142 S-ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A L++AL++       +     +S   + +A   + I   H  D     +   +    
Sbjct: 154 GGAALIMALTLLVAGVLAMVLQARVSAPILAIARVAERITQTHQFDDR---VAVDSSDEL 210

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +         +I    AE +  I E     +     ++RAE+    K++FLA+MSHE+
Sbjct: 211 GVLARSFNTMLEEIARSGAELEQQIMERNRVNAELLAAKERAEDAARQKTQFLANMSHEI 270

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N ++G   ++    +   +    +E++     + Q L+ ++N+ILDLS+IEAG+  
Sbjct: 271 RTPMNGVMGMISLVLDHELDSQD----REHLLMAQSAAQSLIIILNDILDLSKIEAGKMT 326

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
                  L  ++ + + +    A  K +++   + P     V  D   +RQ+++NL+ NA
Sbjct: 327 FETVDFDLHRLIGDAMGIFSSAAIAKGLDLGIDLAPDSPRWVRGDPVRLRQILINLVGNA 386

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFTA  G V +T+          +++D G G+ + ++  +  +F Q   +      G G
Sbjct: 387 VKFTAA-GSVRLTLAPHLDNLVRFAVRDTGIGVPKDQMEAIFEAFVQADGSHTRQFGGTG 445

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL I + ++A   G     S+   G      LP   
Sbjct: 446 LGLAITRRLVALMEGTLWAESQSGCGSTFFVELPVQP 482


>gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1105

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + A +    KS+F+A++SHELRTP + ILG ++++    + P      ++    I 
Sbjct: 535 RQAEESAIKATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTP----NQRDSAETIK 590

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ--- 352
           RS   L+NLIN+ILD S+IEAG+  L      LI IV E + +    A +K I++     
Sbjct: 591 RSIDGLINLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIG 650

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409
           +  P    ++ D + +RQV++NL+ NA+KFT  G  V  ++  + SG       S+KD G
Sbjct: 651 RQSPVPPMLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTG 710

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +     +   F Q   +      G GLGL I + ++   GG     SK+ +G    
Sbjct: 711 IGIPDSVSEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFW 770

Query: 470 AILPNTRVLNF-IPEDNHESTQY 491
             L         +P     + Q+
Sbjct: 771 FSLKLLVAAPAYLPSSVPAANQF 793


>gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 1022

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 158/437 (36%), Gaps = 19/437 (4%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
            S    +     +VL  A++             +  TL        L  +     +    
Sbjct: 307 RSRLAATGWTIAYVLSWADVAA--GIGVQAGALAASTLVAIVVMWLLLVRFHRRVLVPVY 364

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                  +   +        +  +        +   +  S  L   L      +  L   
Sbjct: 365 ARSA--RVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDVLAQMLVPHGGDHHALAAQ 422

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
               +   V    +   M   ++  +                Y      + I +    + 
Sbjct: 423 ALAQYDAFVANGGSGRTMMTELVLDAHGDAPLHLEVIAHSARYQGEDVLIAIFADTTAQR 482

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L+ +        +E  + A+  N AKS FLA+ SHE+RTPLN ILG  E++E   +   
Sbjct: 483 RLVHQ-------LEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERTAL--- 532

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            + + +  +  +  S + LL ++++ILD S+IEAG   +      +I ++   +      
Sbjct: 533 -DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMTVESIEFDVIAVIERELAAFAPV 591

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR- 399
           A+ K + +F  ID S +  +  D   + QV+ NLL NA+KFT+ G  V  V VG      
Sbjct: 592 ARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTSEGRIVARVAVGHDVRGR 651

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I I+D G GI   +   +   F Q   +I     G GLGL +   ++A  GG   +
Sbjct: 652 PELAIGIEDTGIGIDPAQHARLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISV 711

Query: 459 RSKLREGVEVIAILPNT 475
            S    G      LP  
Sbjct: 712 HSAPGVGSLFTVRLPLR 728


>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 561

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 4/266 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           L+      +  + +      ++ E  +   +E  +R  E+N  KS FLA +SHELRTPL 
Sbjct: 282 LYDDLENKVELRTQDLARANDILESQQIQLEEANRRLREDNQYKSDFLAIISHELRTPLT 341

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I+ F+EV+E  +      E  ++   +I  + Q LL +IN IL+++RIEAG+ EL    
Sbjct: 342 SIIAFAEVLEKASEDKCPKE--QKITQEIRANSQVLLRMINNILEIARIEAGKQELIIEP 399

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I L+D++     +++   ++K+I+    +   +  +  D +G+R+++ NLLSNA+KFT  
Sbjct: 400 IDLVDVINAVESVIEPLIEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPE 459

Query: 386 GGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           GG + V V +        I+++DNG GI + + P +   F Q   +I     G GLGL +
Sbjct: 460 GGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLAL 519

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIA 470
           A+ +   HGG   + S+L +G     
Sbjct: 520 AKELAELHGGWIKVVSELDKGSLFTV 545


>gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 2394

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 23/321 (7%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                +V+ + L            ++   + K +    +    +   +A+   A+  +   
Sbjct: 1813 FTQRNVVVLRLLCNQVGISLSNAFLFRRVRKVSATNAAMVESQKRALAQAREAEQKAKIA 1872

Query: 239  RKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               A       E+   AKS FLA++SH+LRTP+N ++G SE+++    G   ++    Y+
Sbjct: 1873 EAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLK----GTKLDKEQDNYV 1928

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I      LL LIN+ILD S++EAG+ ++S   +SL + +RE +  L+   +++ +E  
Sbjct: 1929 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETIREVVRALRYTHRDRGLETI 1988

Query: 352  QKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SI 405
            + +D  P    V  D   + Q+ +NLLSN+ KFT   G V V+          +    S+
Sbjct: 1989 EDLDKVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPK-GYVKVSAMVVREGKGRVRLECSV 2047

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLRE 464
             D G GI E     +   F Q   +   +  G GLGL I ++I+    GG   + S    
Sbjct: 2048 ADTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGV 2107

Query: 465  GVEVIAILPNTRVLNFIPEDN 485
            G  V   L    V    P+D+
Sbjct: 2108 GTTVTFQL----VFQRAPKDS 2124


>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
 gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
          Length = 1060

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L+        L K   ++     E+     +L  AK  +++ +  A + + AKS FLA+
Sbjct: 350 PLAQLIKGKDELSKFAREVKKLSDERMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLAN 409

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLN ++G SEV+   ++      T ++Y+  I  S Q LL+LIN++LD S+IE
Sbjct: 410 MSHEIRTPLNGVIGISEVLSDTSLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIE 465

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           +G   +S  +  + + + +   ++  +A+EK I++   I  +    V  D+  +RQV++N
Sbjct: 466 SGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMN 525

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +SNAVKFT  G   + V           I  S+KD+G GI   +   +   F Q   + 
Sbjct: 526 FMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNST 585

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                G GLGL I+  ++   GG+  + S+  +G      L    V   
Sbjct: 586 TRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFELTAPVVTQE 634


>gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2]
 gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2]
          Length = 609

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 2/233 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE    +  F+A++SHELRTPL  I  ++E ++   M          ++G I    + ++
Sbjct: 372 EEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQLAE--RFVGVIRNETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++    L      +++++ E       + +E +I     ++  +  V 
Sbjct: 430 RLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVV 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ NL+SNA+K+T  GG + +     +     IS++D G GI + ++  +  
Sbjct: 490 IDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGIPKKDLDRIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ I+  HGGQ  + S+  +G      LP +
Sbjct: 550 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPMS 602


>gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 929

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +++  E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EYI  +  +   LL LI++ILDLS+IEAG +E +     +  +  + +   Q++  
Sbjct: 737 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVP 796

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +E+     PS  +V +D   + QVI N ++NA+KFT+  G +HV             
Sbjct: 797 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 853

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI++ ++  +   F +      S   G GLGL I +SI+   GG   + S+  +
Sbjct: 854 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 909

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 910 GSRFWFTIP 918


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I+  +   + ++  LE  +   ++ R  A E    K  F A++SHE+RTPLN ++G  E
Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILE 296

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   +    N   +EY+     SG+ LL LI  ILD SRIE+G+++L      L +I+
Sbjct: 297 LLKNMGL----NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEIL 352

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + I +L  +AQ K +E+   +  ++  S+  D   +RQ+++NL++NAVKFT   G V +
Sbjct: 353 DDVIGLLAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDR-GEVSI 411

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V     +      +  ++D G GI       V  +F Q   +      G GLGL I + 
Sbjct: 412 EVSLLEKKAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           ++   GG   + S   +G       P        P++
Sbjct: 472 LVDLMGGDIGVESGSGKGSIFWFTAPLEE--TSAPQE 506


>gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
 gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
          Length = 678

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 9/254 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E  + + ++  K A   + AK+ FL+SMSH++RTP+NAI+G + + E     P   + 
Sbjct: 266 EQERQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIAEANLYTP---DK 322

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+ +  I+ S QHLL LINE+LD+S+IE+G+ +L+   +SL ++ +    M +  AQEK
Sbjct: 323 LKDCLSKINASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNISDMCRPLAQEK 382

Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--- 402
           N ++   +D     +V  D   ++QV++NLL+NA+K+T  GG + + V        Y   
Sbjct: 383 NQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVREIPSDAVYKGQ 442

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + DNG G+    IP +   F +      +  QG GLGL I Q+I+    G   ++S
Sbjct: 443 YEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIVNMMNGTIEVQS 502

Query: 461 KLREGVEVIAILPN 474
           +   G   I  +P 
Sbjct: 503 EPENGSRFIVAVPL 516


>gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 755

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +  ++ A   N AKS+FLA MSHE+RTP+N ILG +++++         +  K+YI 
Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLLKDS----HPRDDQKKYIK 417

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  +G+ LL LIN+ILD+S++EAG  +L     +   I+R+   + +  A +K IE+  
Sbjct: 418 LLDDAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELAC 477

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKD 407
           ++D  L   V  D   ++Q++LNL+ NAVKFT  GG V+V  G+     +       I+D
Sbjct: 478 RVDGKLPGLVQGDPVRVKQILLNLIGNAVKFTDTGG-VYVQAGYKQLTNNNVELKFEIQD 536

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            GPGI +     +   F Q   +I    QG GLGL I++ +     G+  + S    G  
Sbjct: 537 TGPGIPKDRQHAIFEHFTQADSSITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGST 596

Query: 468 VIAILPNTRVLNF 480
               +    V + 
Sbjct: 597 FTFTITMKEVKDS 609


>gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 427

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 11/316 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                +  + L       +  +          + ++N +I     + + +  ELE  +  
Sbjct: 104 GASDYLPKNKLSPETLTRIVLSALRMYQAEILVKQTNQRISEKNRQLERINRELERKQQQ 163

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                 + +E +  KS FLA+MSHELRTPLNAI+GFS+++     G + NET ++ +G +
Sbjct: 164 IYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDI-NETQRDMLGRV 222

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G+HLL LI++IL+LS+IEAGR EL    + L+ +V E +  LQ     K +++   I
Sbjct: 223 LSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITPKQLDLKVDI 282

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------SGRGQYISI 405
             +   +  D   +RQV++NLLSNA+KFT   G + V++                  +S+
Sbjct: 283 TLNDPIITNDPTRVRQVLINLLSNAIKFT-QHGSITVSIKSLTTKHSCMNGGSEEILLSV 341

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI++ + P +  +F Q          G GLGL I  S++    G   + S++ +G
Sbjct: 342 SDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDITVESQVDKG 401

Query: 466 VEVIAILPNTRVLNFI 481
                 +P+   +   
Sbjct: 402 STFRVRIPHEVCVETA 417


>gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 918

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 16/265 (6%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++ L++E    A+E +  KS+FLA+MSHE+RTP+  ++G SE++         N+  K+ 
Sbjct: 442 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMNLNDEQKDC 495

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
             +IHRS   LL +IN+ILD S++E+GR ++ E   SL  ++R+   M+   AQ K ++ 
Sbjct: 496 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDY 555

Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--IS 404
              I   +     V  D   +RQ++ N+L+N++KFT++G  ++ V +   S        S
Sbjct: 556 QSSIQDEVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFS 615

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E     +   F Q   +      G GLGL I+++++    GQ  + SKL +
Sbjct: 616 VVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 675

Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489
           G      +P  R     P  + ES 
Sbjct: 676 GTTATFWIPFMR----APSQDGESP 696


>gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1195

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 14/266 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +VA+    + ++ AE  N AKS FLA+MSHE+RTP+NAILGF ++++        +
Sbjct: 691 ITEKKVAQEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKRI----TD 746

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y+  +   G+ LL+LIN+ILDLS+IE+G+ E+    I L  ++ E   M    A+
Sbjct: 747 ERSRHYLESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVETAK 806

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG-- 400
           EKNIE+   I+  +  V   DE  +RQ++ NL+ NA+KFT  G  ++ V           
Sbjct: 807 EKNIELLVNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSDKNH 866

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   ISI+D G GIA  +   V   F Q          G GLGL I   +     G
Sbjct: 867 HPSYCSLEISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEMLKG 926

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480
              + S+L +G       P   + + 
Sbjct: 927 IIDLESELGKGSIFTVSFPKVTIGDS 952


>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
 gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
          Length = 916

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 791

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 25/394 (6%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-- 168
           L   IA+      L L              K  + LI  +     ++    A        
Sbjct: 147 LSIVIALVASVAALWLSFYFRRGGSGAAWKKLGSGLIMGAAIVGMHYTGMTAAHFYLGDK 206

Query: 169 --PVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---------ITYHLFKSNVKILSC 217
               +  +  Q  +   +   +L  +  + L  +           I     + +      
Sbjct: 207 SESSLGIILDQNWLGYFISGGTLFTLGLSLLGIYISNKFSFKDTEIQEKANEIHQMNQEL 266

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +   ++L   ++   +  ++    A + N+ KS+FLA+MSHELRTPLNAI+G+SE+   E
Sbjct: 267 RQLNENLEQLVKERTAQLEQAHDEAIKANMIKSQFLANMSHELRTPLNAIIGYSEM-LAE 325

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L  + + E +G I  +G+HLL LIN+ILD+S+IEAG+ E+      L  ++++ I 
Sbjct: 326 EAEELGEQIFVEDLGKIRNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVIT 385

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++    +   ++             D   +RQ+++NLLSNA KFT   G + + V    
Sbjct: 386 TVKPLIDKNGNKL--DXXXXXXXXXTDITKLRQILINLLSNASKFT-QNGTISLEVNREP 442

Query: 398 GRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            +G+      +KD G G++  ++  +   F Q   +      G GLGL I+ S      G
Sbjct: 443 RKGRTGYCFRVKDTGIGMSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDG 502

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
              + S++  G      LP     + + E+  ES
Sbjct: 503 SIQVESEMGAGSIFTCWLP-----SSMEEETQES 531


>gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 795

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 150/309 (48%), Gaps = 6/309 (1%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----A 226
            +A+      +    +     M     +        L K+  K       ++ ++     
Sbjct: 488 TIAIGNWDNTNAFNPEAQQLLMAVGKQAAIAINNAQLIKALEKREELLETQNQILLRQNQ 547

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE  +   +    +  E    KS FL+++SHELRTP+NAI+GFSE++  +   P+N+  
Sbjct: 548 ELESQRQHIELQNLQLLEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINS-Q 606

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I ++G++LL LIN ILDLSRIEAGR EL      L ++V    +   + A EK
Sbjct: 607 QIDMVQRILKNGKNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEK 666

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + +   I      +  D+  +RQV++NLLSNAVKFT   G +++ V   S     I I+
Sbjct: 667 ILSMSVYIYLDNPCIVNDKSRLRQVLVNLLSNAVKFTER-GSIYIHVSELSADKLLIEIR 725

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIAE +IP +   F Q     K    G GLGL I  S++    G+  + S++ +G 
Sbjct: 726 DTGIGIAETQIPHIFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGS 785

Query: 467 EVIAILPNT 475
                LP  
Sbjct: 786 SFRLELPRQ 794


>gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
 gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
          Length = 1436

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 10/246 (4%)

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +    E ++ AEE + AKS FLA+MSHE+RTPLN ++GF++++    +    NET  +
Sbjct: 786  AQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKL----NETQHQ 841

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            Y+  +H+S   LL++IN+ILD S+IEAG+ EL      L ++  +   ++  + Q K +E
Sbjct: 842  YLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKCDLYEMASQATDIITYQIQNKGLE 901

Query: 350  IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404
            +   I  +L   ++AD   ++QV++NLL N+ KFT   G + + +      G       S
Sbjct: 902  MLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEK-GEIELKIENLESEGNSNTFRFS 960

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            ++D G GI   +   +  +F Q   +      G GLGL I   ++     +  ++S++ +
Sbjct: 961  VRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLGLTITNKLLGLMDSKLQLKSEVGK 1020

Query: 465  GVEVIA 470
            G     
Sbjct: 1021 GSTFFF 1026


>gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1056

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 159/306 (51%), Gaps = 21/306 (6%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           + TAL     I  +  +  +   +   E+  +  +L+      +  RK A+  N AKS F
Sbjct: 539 IRTALLSADLIEINSEQYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTF 598

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAILGFS+++    +    ++     +  I+RSG+HLL+LIN+ILDLS
Sbjct: 599 LANMSHELRTPLNAILGFSQLMAQNPIFVSASKE----LEIINRSGEHLLSLINDILDLS 654

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IE G+  L E       ++     ML++RA  K I++  + D     +  DE  +RQV+
Sbjct: 655 KIEVGKVVLEEKPFDFYILLDTLEEMLKMRANAKGIQLISERDQIPQYIKTDENKLRQVL 714

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGEIPTVLT 422
           +NL+ NA+KFT   G + + V   S              +  ++D G GI+  EI  +  
Sbjct: 715 INLIGNAIKFTNQ-GSITLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFD 773

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA-----ILPNTRV 477
           +F Q S A K ++QG GLGL I++  +   GG+  ++S+L +G           +    V
Sbjct: 774 AFVQTS-AGKQSQQGTGLGLSISRKFVQLMGGKISVKSQLGKGSLFQFNIQATTVKADEV 832

Query: 478 LNFIPE 483
           ++  P+
Sbjct: 833 ISPKPQ 838


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1784

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I R+
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K IE+   + P+
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
            +   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G G+
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             E +   +  SF Q   +      G GLGL I + ++   GG+  + S+   G      
Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265


>gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 771

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/269 (40%), Positives = 156/269 (57%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   AEL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 502 RRLMATINDLSASRQILERQKAELSTANTNYLAEKERAEAANKAKSEFLANMSHELRTPL 561

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG  +LS  
Sbjct: 562 NAILGFSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNVINDILDMSKIEAGHIKLSCE 621

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ EC+ +  + A  KNI + Q I   +  + AD + M+Q++LNLLSN+VKFT 
Sbjct: 622 KIDLAPLIEECLRLTSIPAACKNIHVEQSISSGI-KLTADRRAMKQILLNLLSNSVKFTN 680

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V           ++I D G GI +  +  +   F Q       ++ G GLGL I
Sbjct: 681 NGGRIAVRTRKV-DDAVVLTIADTGIGIPKSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 739

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+   H G+  IRS+   G  +   +P
Sbjct: 740 SRSLTLLHHGRMRIRSREGIGTVIAIRIP 768


>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 844

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 9/288 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +     S+           N+K+L   + +  L  +     S   +T+  AE  N AKS+
Sbjct: 322 LWGLLASYQNSAPRDWSPQNIKLLKQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQ 381

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHELRTPLNAILGFS+++         NE  +EYI  I+RSG+HLL LI +ILD+
Sbjct: 382 FLAHMSHELRTPLNAILGFSQLL---NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDM 438

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           ++IEAG+  L  ++ +L  +++    M  L+AQ+K +++F +IDPS+   +  DE  +RQ
Sbjct: 439 AKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQ 498

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V++NLLSNA+KFT   G++ + V              ++D+GPGI   E P +   F Q 
Sbjct: 499 VLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQT 557

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  K+  +G GLGL I++  ++  GG   +   L  G      LP  
Sbjct: 558 ELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLPVE 604


>gi|254227606|ref|ZP_04921037.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395654|ref|YP_003287507.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151939648|gb|EDN58475.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339248|gb|ACY53042.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 785

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 8/269 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +      +E R +AE    AKS FLA+MSHELRTP+N +LG S++I  ET    N  T K
Sbjct: 250 KQLNLEIEEARNKAERAAKAKSSFLAAMSHELRTPMNGVLGLSQMIAEET----NEPTTK 305

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  SGQHL+ ++N+ILD S++E  + E  ++  +L  ++      ++    EKNI
Sbjct: 306 EYVKVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFNLDQVISPVCSAIKPLIDEKNI 365

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIK 406
           E+  + + P       D   +RQ++ NL  NAVKFT+  G V +            + + 
Sbjct: 366 ELIVENEVPEYVEFTGDCARLRQILFNLAGNAVKFTSE-GHVLIRTELDKVNHCLVMIVS 424

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA  +   V  SF Q   +      G GLGL I + +     G+  ++S    G 
Sbjct: 425 DTGIGIALDKQEHVFNSFEQADSSTTRKFGGTGLGLAIVKKLTGLMDGKITLKSVEGVGS 484

Query: 467 EVIAILPNTRVLNFIPED-NHESTQYKCY 494
           + I  LP   V   +P+      T+ K +
Sbjct: 485 QFIVELPIPWVECELPKAQEPPKTRKKTH 513


>gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 778

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205
           +A +I A +   L + V +S   ++V   T  ++     ++ L     +  ++       
Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258
            L K   ++     E + L  E E AK    + ++ AE       E + AKS FLA+MSH
Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G SEV+    +      T ++Y+  I  S Q LL+LIN++LD S+IE+G 
Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +S  +  + + + +   ++  +A+EK IE+   I P+    +  D+  +RQVI+N +S
Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  G   + +T   ++     I  S++D+G GI E +   +   F Q   +    
Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I+  ++   GG   + S+   G      L
Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 916

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 588

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 8/273 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRT 262
             L++     +  + ++  L A  ++ +  S   R  ++A+  N  K  FLA++SHELRT
Sbjct: 157 RSLYQDLEHRVQERTQELAL-ANKQLKEDASIRQRLYEQAQTANRLKDEFLATVSHELRT 215

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILG S++++       + E  K  I  IHR+ Q  + +IN++LD+SRI +G+ +L 
Sbjct: 216 PLNVILGHSDILKD---PATSPEEAKVSINAIHRNAQIQVQIINDLLDVSRIISGKLQLH 272

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              I +  +V      +Q+ A+ KNI++  +    L SV  D + ++QV+ NLLSNA+KF
Sbjct: 273 VKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQVLWNLLSNAIKF 332

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GG + V +     R   I + DNG GI    +P V   F Q          G+GLGL
Sbjct: 333 TPKGGNITVKLSNVESR-VQIDVIDNGKGIDPEFLPYVFERFRQEDATTTRRYGGLGLGL 391

Query: 443 PIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            I + I+  HGG     S    +G +    LP 
Sbjct: 392 AIVRHIVEGHGGTVAATSAGPNQGAKFTVSLPV 424


>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
 gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 922

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 156/349 (44%), Gaps = 27/349 (7%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
              +  LL  + ++ L  + L   V     P+   + T   +    LD  + G     L 
Sbjct: 176 FMAAMLLLFCMGVAMLLAYRLMRDV---TTPIRNMVETVDRIRRGQLDSRVEG---YMLG 229

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247
               +   +    + + +   E    I            ++E+     D  +KRA+E   
Sbjct: 230 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 289

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+     +T+      T K+Y+  I RS  +LLN+IN+
Sbjct: 290 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 345

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LD S++EAG+  L     SL + + E I++L   A EK +E+   I   +      D  
Sbjct: 346 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 405

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422
            ++Q++ NLL NA+KFT   G + + +             I IKD G GIAE +   +  
Sbjct: 406 RLQQIVTNLLGNAIKFTEQ-GNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQ 464

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q ++   GG     SK  +G      
Sbjct: 465 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCT 513


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 10/260 (3%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E A+  ++E  + A+  NLAKS FLA+MSHE+RTPLN ++G + ++    +    N   
Sbjct: 339 QEDARLKAEEMARDAQAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETEL----NSQQ 394

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + Y   +  SG+ LL+LIN+ILDLS+IEA + EL E    L   + +    + +RA E+ 
Sbjct: 395 RRYAETMLYSGESLLSLINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERG 454

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
           +E+     P L   V  D   +RQV+ NL+ N++KFT   G V + V             
Sbjct: 455 LELICLFSPGLSPLVKGDCGRLRQVLANLVGNSIKFTEK-GEVAIKVSSRDKDEENVLLS 513

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D G GI + ++ T+   F Q   +      G GLGL I + ++   GG+  + S+ 
Sbjct: 514 FEISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSSRE 573

Query: 463 REGVEVIAILPNTRVLNFIP 482
             G      +   +V   IP
Sbjct: 574 GSGSVFSFTVLFRKVAGEIP 593


>gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
 gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
          Length = 1358

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 16/265 (6%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++ L++E    A+E +  KS+FLA+MSHE+RTP+  ++G SE++         N+  K+ 
Sbjct: 720 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMNLNDEQKDC 773

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
             +IHRS   LL +IN+ILD S++E+GR ++ E   SL  ++R+   M+   AQ K ++ 
Sbjct: 774 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDY 833

Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--IS 404
              I   +     V  D   +RQ++ N+L+N++KFT++G  ++ V +   S        S
Sbjct: 834 QSSIQDEVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFS 893

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E     +   F Q   +      G GLGL I+++++    GQ  + SKL +
Sbjct: 894 VVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 953

Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489
           G      +P  R     P  + ES 
Sbjct: 954 GTTATFWIPFMR----APSQDGESP 974


>gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 791

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            F+   +    +S    ++      D I   +  +    + R RAE  N AKS FLA MS
Sbjct: 329 LFWEAASISAIRSEQGKITHFVAVKDDITARKKLERELQQARDRAESSNRAKSEFLALMS 388

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+NAILG SE++    +        +E +    R+   LL+LIN+ILDLSR+E+G
Sbjct: 389 HEIRTPMNAILGMSELLAESNLSG----EQRELLTVQRRAALALLDLINDILDLSRVESG 444

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R EL  + + L D   E   + + +A +KN+     ++  L    +AD   +RQV++NL+
Sbjct: 445 RLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDLPKTYFADRARLRQVMINLV 504

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT  GG V ++V   S +G       S+ D+G GI       +   F Q    + 
Sbjct: 505 GNAIKFTQQGG-VWISVERLSQQGEMVKLKFSVVDSGCGIPSEAQSQIFEPFTQADAYVT 563

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I+Q ++   GG   + S   +G     IL
Sbjct: 564 RHHGGTGLGLTISQRLVQLFGGTLQVESTPNQGSRFSFIL 603


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 7/335 (2%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              +++     +  F     + ++  P    L        +  +I           F   
Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERFLQAWYFEQGNDAEIIAPLPPQVNELFIRV 317

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE--ENLAKSRFLASMSH 258
           +     +S    L  +     +    +           R   EE   +  +  F+A++SH
Sbjct: 318 VREEKEQSIELSLQGRTWVILMTPLYDKTNVRGAVAVLRDMTEERRLDKLRKDFIANVSH 377

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTP+  + G+SE I  +      +E  KE    I+     +  L+N++LDL+R+EAG 
Sbjct: 378 ELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGH 435

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L+   + L   +   I   Q  A+EK I++  + D     +  D   + QV+ NL+ N
Sbjct: 436 ITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIRIRMDPDRIEQVLTNLIDN 495

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A++ T   G V + +   +G G  I ++D+G GI E ++P V   F +   A      G 
Sbjct: 496 AIRHTDQNGTVKI-IAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFYKADKARTRGRSGT 554

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL IA++I+  H G   + SKL EG      LP
Sbjct: 555 GLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589


>gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 753

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 17/265 (6%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      R+RAE  N AKS FLA+MSHE+RTP+N ++G +E++   ++     E  + Y 
Sbjct: 205 EEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDTSL----TEEQRLYA 260

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA +  L      L   + E +++LQ  A++K + + 
Sbjct: 261 NTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHEVVMLLQANARDKGLTLL 320

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405
              D  + +    D   +RQ++ NL+ NAVKFT   G V   V             +ISI
Sbjct: 321 VDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQ-GHVTARVTGVPHPEDNTVMLHISI 379

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D+G GI E +I  +   F Q         +G GLGL I + ++    G+  + S+  +G
Sbjct: 380 EDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKMMDGEIWVESEFGKG 439

Query: 466 VEVIAILPN-----TRV-LNFIPED 484
                 LP      ++V    +P+D
Sbjct: 440 SCFGFRLPLVVADGSQVNAPELPDD 464


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 27/322 (8%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           LS + I+  ++       +L   +     +   L   NV+++    E             
Sbjct: 221 LSARRILYKNLQMGLGGAILLLVIGCGILLARQLAAVNVQLMQSGEEMR----------- 269

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +++AE  + AKS FLA+MSHE+RTP+N ILG +E++    +    N    +Y+  
Sbjct: 270 ---IAKEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTEL----NPQQFDYLRS 322

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  S ++L+++IN+ILD S+IE GR E       L  ++ + +  L +RA +K +E+  +
Sbjct: 323 VKVSAENLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQ 382

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKD 407
           +DP L  ++  D   +RQV+LNL  NAVKFT   G V + V                ++D
Sbjct: 383 VDPDLPDTLIGDPGRLRQVLLNLAGNAVKFTDQ-GEVELLVSKQQELPGKELLLRFEVRD 441

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+      +   F Q  ++      G GLGL I+  ++   GG+  + S   +G  
Sbjct: 442 RGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGST 501

Query: 468 VIAILPNTRVLNFIPEDNHEST 489
               L     +   P+   + T
Sbjct: 502 FWFTL--RCQVQEQPQHEAQQT 521


>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 844

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 9/288 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +     S+           N+K+L   + +  L  +     S   +T+  AE  N AKS+
Sbjct: 322 LWGLLASYQNSAPRDWSPQNIKLLKQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQ 381

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHELRTPLNAILGFS+++         NE  +EYI  I+RSG+HLL LI +ILD+
Sbjct: 382 FLAHMSHELRTPLNAILGFSQLL---NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDM 438

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           ++IEAG+  L  ++ +L  +++    M  L+AQ+K +++F +IDPS+   +  DE  +RQ
Sbjct: 439 AKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQ 498

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V++NLLSNA+KFT   G++ + V              ++D+GPGI   E P +   F Q 
Sbjct: 499 VLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQT 557

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  K+  +G GLGL I++  ++  GG   +   L  G      LP  
Sbjct: 558 ELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLPVE 604


>gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 845

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +         E  + AE  N AKS+FLA+MSHE+RTPLN I+GF++++  +      +
Sbjct: 431 ITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTDLLLYDIESTEAD 490

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  SG+HLL LINEILDLS+IE+G+  + +   S   I+ + I +L+ + +
Sbjct: 491 --RREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQILTDVISVLRPKFE 548

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RG 400
           EK I+I +  D  + + V  D   ++Q++LN++ NA+KFT   G V +     +      
Sbjct: 549 EKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQT-GEVRIVARLEAEATRSR 607

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI +G++  +   F Q   ++     G GLGL I++++    GG     S
Sbjct: 608 LIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHAES 667

Query: 461 KLREGVEVIAI-----LPNTRVLNFIPEDNHEST 489
               G +         L  +      P ++  + 
Sbjct: 668 VEGLGSKFTITVDAGNLTLSSEPKPAPPEDAPTA 701


>gi|93609097|gb|ABF13477.1| DRK1 histidine kinase [Ajellomyces dermatitidis]
          Length = 1274

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 14/340 (4%)

Query: 156  NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
             F +  A     +          I       +    +    ++ F  + Y    +  +  
Sbjct: 813  TFKIRAANAQGVWTPQPRTLKVIITPPWWRTVWAILLFLLLIAGFAGMFYRWRMTTQRQN 872

Query: 216  SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
              Q E+     EL+  +   ++ R+   R ++ +  K +FLA+ SHELRTPL  I+G SE
Sbjct: 873  LQQRER-----ELQQEREQLEKERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSE 927

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +  + + P      K  +  +  SG+ L +L+N+ILD S+++    EL    ISL  + 
Sbjct: 928  ALLEDELDP----ERKANLTMVVSSGKRLNSLVNDILDFSKLKNADIELDLRPISLHSMA 983

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               +  +      K+IE+   +     +  ADE  ++Q++ NLL NAVKFT   G + + 
Sbjct: 984  DVVLKNISPLVAGKSIELLNSVSVDFPAASADENRLQQILYNLLGNAVKFT-ESGYIKID 1042

Query: 393  VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      + ++D GPGI   +   +   F QG  +   A  G GLGL I++ ++  H
Sbjct: 1043 A-LERDNDLVVCVEDTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTGLGLSISKRLVELH 1101

Query: 453  GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            GG   + S++ +G +    L  +     +P    E ++ K
Sbjct: 1102 GGTMWLESEIDQGSKFFFSLQKSISEGELPVQKVEVSKNK 1141


>gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris
            marina MBIC11017]
          Length = 1660

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 28/286 (9%)

Query: 223  DLIAELEVAKSLSDETRKRAE------------------EENLAKSRFLASMSHELRTPL 264
            + I++ + A+    +  +  E                    N AKS FLA+MSHELRTPL
Sbjct: 1160 EDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAANRAKSDFLANMSHELRTPL 1219

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ILG+++V++           +++ +  IH+SG+HLL LI++ILD+++IEA + EL+ S
Sbjct: 1220 NGILGYAQVLKR---DHHLLPCHQQALNTIHQSGEHLLTLIDDILDIAKIEARKLELNIS 1276

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
             I    ++   + + Q+RAQEKNI+   +   SL   + +D+K +RQ++LNLLSNA+KFT
Sbjct: 1277 DIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQILLNLLSNAIKFT 1336

Query: 384  AIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
               G+V ++V       Q I    +I D G GI+  +I  +   F Q    +    +G G
Sbjct: 1337 DQ-GQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGD-LNRRAEGTG 1394

Query: 440  LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            LGL I++ ++   GG     S   +G      +P       +P   
Sbjct: 1395 LGLSISRQLVELMGGTLQAESCEEKGSTFWFSIPYKFSKQSVPAQT 1440


>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1058

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L+        L K   ++     E+     +L  AK  +++ +  A + + AKS FLA+
Sbjct: 348 PLAQLIKGKDELSKFAREVKKLSDERMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLAN 407

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLN ++G SEV+   ++      T ++Y+  I  S Q LL+LIN++LD S+IE
Sbjct: 408 MSHEIRTPLNGVIGISEVLSDTSLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIE 463

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           +G   +S  +  + + + +   ++  +A+EK I++   I  +    V  D+  +RQV++N
Sbjct: 464 SGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMN 523

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +SNAVKFT  G   + V           I  S+KD+G GI   +   +   F Q   + 
Sbjct: 524 FMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNST 583

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                G GLGL I+  ++   GG+  + S+  +G      L    V   
Sbjct: 584 TRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFELTAPVVTQE 632


>gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 918

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 177/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L     D 
Sbjct: 625 TRFSVDLPLSPALEAGEADE 644


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           ++      +      ++ AE  + AKS FL+ MSHELRTP+N I+G + ++    +    
Sbjct: 617 MVFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---- 672

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  + YI  I  S   L+ ++NEILDLS+IEAG+  L   +  L ++V     +  ++A
Sbjct: 673 DEEQRSYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQA 732

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
            EK IE+   +D  +   +  D   +RQV++NL+SNA+KFT   GRV++ V   +     
Sbjct: 733 MEKGIELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTER-GRVNIFVERKAYSRHK 791

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+ D G GI       +   F Q   A+     G GLGL I ++++   GG  
Sbjct: 792 NRCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSI 851

Query: 457 LIRSKLREGVEVIAIL 472
            + S    G      L
Sbjct: 852 GVDSDEARGATFRFQL 867


>gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1161

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 6/241 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K ++   R+ AE+   AKS FLA+MSHE+RTP+N ++G +E++    +          Y+
Sbjct: 640 KEIAQREREAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRETPLDL----QQTGYV 695

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             IH SG  L++LIN+ILD S+IE+G+ E+   ++ L+ ++ EC  +   ++  KN+ ++
Sbjct: 696 NTIHNSGMALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQQSISKNLGLY 755

Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             IDP +   + +D   +RQ++LN LSNA KFT   G V +     +     I ++D G 
Sbjct: 756 VDIDPQINDRIISDPARIRQILLNFLSNAFKFTET-GSVRIRADSLADGRIRIGVRDTGI 814

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+++ +   +  SF Q  ++      G GLGL I++ +    GG+  + S+  +G E   
Sbjct: 815 GLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISESGKGSEFWF 874

Query: 471 I 471
            
Sbjct: 875 S 875


>gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 1288

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 916

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 746

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 144/272 (52%), Gaps = 12/272 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  S  ++L    E   L+ E +      ++ +K A+E N AKS FL+++SHELRTP
Sbjct: 253 VEVLADSFNQLLRRMKE---LLQEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTP 309

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ILG+++++E  +          + +  IH SG HLL LIN++LDLS+IEA + +L  
Sbjct: 310 LNGILGYAQILERNS---NLTPLQTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYP 366

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           + I     +   + M+  +A++K+I +    DP+L   V  DEK +RQ++LNLL N VKF
Sbjct: 367 TDIDFHTFLNTVVEMIHTKARQKDIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKF 426

Query: 383 TAIGGRV-HVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T  G  +  V V   S    +     I D G GI E  + TV   F Q         +G 
Sbjct: 427 TDQGKVIFKVQVTPLSLTINQTFRFEIIDTGVGINEEYLETVFKPFEQVGNVQHR-SEGT 485

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGL I++ ++   GG+  + SK+ +G +   
Sbjct: 486 GLGLAISKQLIELMGGELKVESKVNQGSKFWF 517


>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
 gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
          Length = 924

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 12/278 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              ++  + + + E         +K A++ N  KS FLA MSHELRTPLN ++GF+    
Sbjct: 257 QATSDYRETLEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFT---- 312

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +      N+  K+Y+  I  S   L+ +I++ILD S++EAG  EL      L D V E 
Sbjct: 313 RQLYKTPLNKNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEV 372

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           + +L   A +K +E+   I+P +   +  D    +QV++NLLSNA+KFT  G  +V ++ 
Sbjct: 373 MTLLAPSAHDKQLELSIYINPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGAIKVDISH 432

Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      +S+ D G GI   +   + T+FGQ   +I     G GLGL I + I+  
Sbjct: 433 RLLDEERTSVLVSVADTGVGIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEA 492

Query: 452 HGGQFLIRSKLREGVEVI----AILPNTRVLNFIPEDN 485
             G+  + S    G          LPN   +N +P  +
Sbjct: 493 MSGRITLNSAPGSGTCFTFNGVFRLPNHVFINDLPTQS 530


>gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
 gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
          Length = 1290

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 684 EMDELKRKINKMISNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 743

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 744 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 800

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 801 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 859

Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                 S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 860 TISKSTREICQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 919

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 920 SKRLVNLMGGDVWVTSEFGHGSTFHFT 946


>gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 575

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   + +   +++  I    + L+ L
Sbjct: 342 LERVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + +  +++ ++V E I +L+++A++KNI+   K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VT+         I +KD G GI E EI  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTLE-KPNGMVVIKVKDTGIGIPEKEIERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  ++S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIPIKKKADP 573


>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 918

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L+    D 
Sbjct: 625 TRFSVDLPLSPALDAGEADE 644


>gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 600

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +     G  + ET + ++  I+  
Sbjct: 361 AIRRLEN---MRSEFVANVSHELKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDE 415

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  LI +IL+LS+IE+ R  L  S I +   +   +  L   A +K I +   I   
Sbjct: 416 SERLNRLIGDILELSKIESKRSPLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDE 475

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIA 413
           L  + ADE  ++Q+ LNLLSN + +T  GG+V + V              ++ D G GI 
Sbjct: 476 L-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIP 534

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++P +   F +          G GLGL I + ++  H G   + S+L  G      LP
Sbjct: 535 KKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594

Query: 474 N 474
            
Sbjct: 595 L 595


>gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 591

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 6/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +    +   + ET + ++  I+  
Sbjct: 358 AIRRLE---RMRSEFVANVSHELKTPIAAVKGFAETLLGGAV--NDEETARSFLQIIYDE 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI +IL LS+IE+ R  L  S + +   + + + M++  A +K+I++  +++  
Sbjct: 413 SDRLNRLIGDILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHG 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V ADE  +RQ+++N+++N V +T  GG+V V +         I I D G GI + ++
Sbjct: 473 L-YVEADEDRLRQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDL 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           P +   F +   A   +  G GLGL I + ++  H G   + S +  G   +  LP 
Sbjct: 532 PRIFERFYRVDKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELPV 588


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 17/321 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
              +    +        L  AL     +       N+ I   +AE D      +  +   
Sbjct: 153 VSHLFFSKLKRNMQHAFLMDALLTLCLLLIAWVVINILIRKLRAEIDA----RKQTEKEL 208

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +++AE  + AKS F+A++SHE+RTP+NAILG   +++   +    +    +++  I+
Sbjct: 209 ILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRTDL----DARQTDFLNRIN 264

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            + + LL LIN+ILD S+IEAG+ ++     SL  ++++   M   +A EK +E+   + 
Sbjct: 265 VAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIFSVS 324

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-----GQYISIKDN 408
             +   +  D   + Q++LNL++NA+KFT  G   V V +               SI+D 
Sbjct: 325 QDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSIRDT 384

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA   +  +  +F Q    +    +G GLGL I + ++   GG+   +S   +G   
Sbjct: 385 GVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKGSTF 444

Query: 469 IAI--LPNTRVLNFIPEDNHE 487
           +              P++  E
Sbjct: 445 VFTAGFQVDTDEAPPPQEVKE 465


>gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 633

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E   A +   +TR+ AE+ N AKS FLA MSHELRTP+N +LG  +++E   M     + 
Sbjct: 243 EQHQAMAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRM----TDE 298

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             EY      S +HLL +IN+ILD SRIE    EL     +L ++V  C    Q  A ++
Sbjct: 299 QHEYTALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQR 358

Query: 347 NIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI- 403
            + +   +   +    V  D   +RQ+++NL+ NA+KFT   GRV V   W +   + + 
Sbjct: 359 KLGLDLLVPDDMQALQVQGDPTRIRQILVNLIGNALKFTEQ-GRVTVQCQWQALDHELLW 417

Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D+G GI    +  +  +F Q   +I     G GLGLPIA+++    GG    +S
Sbjct: 418 FTCTVRDSGIGIPAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQS 477

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  +G      +P        P
Sbjct: 478 EEGQGSVFTLEIPLALSRQTPP 499


>gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 769

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/295 (38%), Positives = 160/295 (54%), Gaps = 12/295 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETR------K 240
           G      +  T I  H  K     L  +A   DL        + A  L+D  R      +
Sbjct: 469 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQTKLEKQAHQLADLARKYGDEKR 528

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE N  KS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 529 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 588

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR  L    + L   + E + ++  RA+ K++++  ++   +  
Sbjct: 589 LLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRAEVGDQIPI 648

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT   GRV V     +G    + I D G GI    +  +
Sbjct: 649 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-SRIAGDSIVLMIADTGIGIPPQSLRRL 706

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F Q    +  +  G GLGL IA+S++  HGG   +RS L EG  V+  LP  
Sbjct: 707 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSLPRA 761


>gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 927

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 18/277 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           ++  ++NV +   + E   +        I EL+  +++  E +++AE  +  KS FLA+M
Sbjct: 659 WNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANM 718

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNAI+GFS ++        + E  ++Y+  I  +   LL LI++ILDLS+IEA
Sbjct: 719 SHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIEA 774

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G ++  E  + +  +  + +  ++++A+   +E+          + +D   + QVI N +
Sbjct: 775 GTFDFVEKELDVNMLCEDIVRFMKMKAK-PGVEVLFDRHLPECRIVSDRNRLNQVIANFV 833

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NA+KFT   G + V             + D G GI       +   F +      +   
Sbjct: 834 NNAIKFTTA-GSIRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKL----NTFVH 888

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++SI+   GG   + S+  +G     +LP
Sbjct: 889 GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 925


>gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 940

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 18/277 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           ++  ++NV +   + E   +        I EL+  +++  E +++AE  +  KS FLA+M
Sbjct: 672 WNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANM 731

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNAI+GFS ++        + E  ++Y+  I  +   LL LI++ILDLS+IEA
Sbjct: 732 SHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIEA 787

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G ++  E  + +  +  + +  ++++A+   +E+          + +D   + QVI N +
Sbjct: 788 GTFDFVEKELDVNMLCEDIVRFMKMKAK-PGVEVLFDRHLPECRIVSDRNRLNQVIANFV 846

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NA+KFT   G + V             + D G GI       +   F +      +   
Sbjct: 847 NNAIKFTTA-GSIRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKL----NTFVH 901

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++SI+   GG   + S+  +G     +LP
Sbjct: 902 GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 938


>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 932

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 8/278 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLSN----SQMDYLQTIEKSANNLLNIINDILDFSKLEAG 355

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        + + E I +    A EK +EI  K+DP +   +  D   ++Q++ NL+
Sbjct: 356 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 415

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            N++KFT  G   V V +   SG    +   ++D G GI+E +   +  +F Q   +I  
Sbjct: 416 GNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 475

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I Q +++  GG+  + S+L +G      
Sbjct: 476 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513


>gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
 gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
          Length = 697

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +         RK+AE  N AKS FLA MSHE+RTPLNA+LG  + +    +    +
Sbjct: 305 ITHRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----D 360

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E++  + +S Q LL +IN+ILDLSRIE+G++EL  + I + D +   +  L  +A+
Sbjct: 361 EKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNADIHIADSINLVVNQLNEQAK 420

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            KNI +  +ID S+  S+  D+  + QV+ NL+ NA+KFT + G V V+V   +     I
Sbjct: 421 RKNITLTTQIDASVPDSMLGDKNRIAQVMFNLIGNAIKFTNV-GSVRVSVKAVNNN-IEI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA     T+   F Q   +I     G GLGL I+  ++    G   + S L 
Sbjct: 479 AVIDTGIGIAPYAQKTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSVLN 538

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G      +P T V++   +D  E 
Sbjct: 539 VGSCFTVSIPITSVVDETEKDLPEQ 563


>gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1021

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 143/279 (51%), Gaps = 15/279 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +      R  A E +  KS+FLA++SHE+RTP+ +++G  +++    +     
Sbjct: 522 ITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAER 581

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E     +     + +HL +++N++LDLS+IEAGR  L  S      ++R  + +L ++A+
Sbjct: 582 EETTSLLRL---AAEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQAR 638

Query: 345 EKNIEIFQKI----DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTS 397
            + IE+  +     +PS  S+  D   +RQ+++NL+SNA+KF+  GGRV V  G      
Sbjct: 639 ARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEED 698

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            R   I + D G GIA  +I  + T + Q     +    G GLGL I++ +    GG+  
Sbjct: 699 SRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELH 758

Query: 458 IRSKLREGVEVIAILPNTRVLNF-----IPEDNHESTQY 491
           +RS++  G      LP  +  +       P +N +++ +
Sbjct: 759 VRSQVGVGSTFTLTLPCPKEASAFEPSISPSENSKNSDF 797


>gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. 230613]
          Length = 522

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 299 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 354

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI I    +  +  +  ++  
Sbjct: 355 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 413

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 414 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 472

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 473 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 520


>gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
 gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
          Length = 569

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
 gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 564

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 3/243 (1%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  +   +E  +R  E+N  KS FLA +SHELRTPL +I+ F+EV+E  +      E  +
Sbjct: 308 ESQQIQLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKCPKE--Q 365

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +   +I  + Q LL +IN IL+++RIEAG+ EL    I L+D++     +++   ++K+I
Sbjct: 366 KITQEIRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSI 425

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKD 407
           +    +   +  +  D +G+R+++ NLLSNA+KFT  GG + V V +        I+++D
Sbjct: 426 QYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQD 485

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI + + P +   F Q   +I     G GLGL +A+ +   HGG   + S+L +G  
Sbjct: 486 NGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSL 545

Query: 468 VIA 470
              
Sbjct: 546 FTV 548


>gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169
           L W  L L     +  G  +     +  +A L    L+AL +    N  L          
Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L T+  +        LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            E      LP TR
Sbjct: 502 SEFWISLRLPKTR 514


>gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 358

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 143/288 (49%), Gaps = 15/288 (5%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           LA   SF   I         ++     E+     +L          +         K  F
Sbjct: 60  LAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNEELIRAK-------RLKDEF 112

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAILG +E ++ E  GP+ N+   + +  + RS  HLL LIN+ILD++
Sbjct: 113 LANMSHELRTPLNAILGMTEGLQEEVFGPV-NDRQLKALQTVERSASHLLALINDILDVA 171

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IE+G+ EL  S  ++  + +  I  ++ +A +K I++   +   L  +  DE+ +RQV+
Sbjct: 172 KIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKLPDIILDERRIRQVL 231

Query: 373 LNLLSNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +NLL+NAVKFT  GG + + V                 S++D G GI+   I  +   F 
Sbjct: 232 INLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIGISPENIKKLFQPFM 291

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   A+    QG GLGL + + I+  HGG+  + S++  G      LP
Sbjct: 292 QIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVLLGSCFSIDLP 339


>gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 568

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 4/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTP+  I  + E +       ++ E  K+++  I      +  L
Sbjct: 342 LDTMRKEFVANVSHELRTPIATIKSYVETLL---YSDVDAEYSKKFLKIIDSETDRMTRL 398

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS++++    L     +L DIV E I  L + AQ+KN ++   +  +   V+ D
Sbjct: 399 VKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYID 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI+NL++NA+K+T   G + +   +       I ++DNG GI + ++P +   F
Sbjct: 459 RDKMEQVIVNLVTNAIKYTPENGMIKIMTEYDESFASLI-VEDNGIGIPKEDLPRIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   A      G GLGL I + I+  H G+  I S++ +G  V   LP
Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
 gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
          Length = 916

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
 gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
          Length = 1318

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 27/290 (9%)

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            L+ +      L  E RK AEE   AKS FLA+MSHE++TP+N  LG + ++    +    
Sbjct: 762  LLKQERENNRLLKEARKAAEEAVQAKSEFLANMSHEIKTPMNGALGMAGLLLDTELQS-- 819

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                + ++  I   G  L+ +IN+ILD S+IEAG+ +L E + +L   + E + +L ++A
Sbjct: 820  --EQRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEECSFNLRTCIEEALDLLAVKA 877

Query: 344  QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
             +K +E+       +   V  D   +RQ+++NL+ NA+KFT + G V V VG    +   
Sbjct: 878  AQKQLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFTNV-GEVTVAVGAREIQHVC 936

Query: 400  --------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                             I++ D G GI    +  +  SF Q   +I     G GL L I+
Sbjct: 937  ALDPQKIAEEVQHFEVEIAVNDTGIGIPPDNMSRLFDSFSQVDSSITRQYGGTGLALTIS 996

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + +    GG+  +RS++ +G      +     L   PE    + + +  A
Sbjct: 997  KHLCELMGGRMWVRSEVGKGSSFAFTV----QLQVKPESAGLAAETRTPA 1042


>gi|120598068|ref|YP_962642.1| hybrid sensory histidine kinase BarA [Shewanella sp. W3-18-1]
 gi|146293861|ref|YP_001184285.1| hybrid sensory histidine kinase BarA [Shewanella putrefaciens
           CN-32]
 gi|120558161|gb|ABM24088.1| Hpt sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145565551|gb|ABP76486.1| Hpt sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
          Length = 933

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +L+ + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIMVLLGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S++EAG+  L      L + + + + ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPNVPDHVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 524


>gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
 gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
          Length = 878

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + +I + +  +      ++ AE  + AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 359 QLNQIIDQQKEYERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHL 418

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 + KE + DI  S   LL LIN+ILDLS+IE+G   LS   + L ++V + + ML
Sbjct: 419 SS----SQKEILSDIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNML 474

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             +A ++++E+      +L   +  D+   +QV++NLLSNAVKFT   G V V +    G
Sbjct: 475 TSKALKQDVELKVDFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQ-GSVSVEL-LIEG 532

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +     + D+G GI+  ++  +   F Q   +I     G GLGL I   ++    G   +
Sbjct: 533 QQLVCHVADSGVGISPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISV 592

Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483
            S    G      +P   V +  PE
Sbjct: 593 SSTPGVGSRFTVSVPLE-VSDQQPE 616


>gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 418

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL AI GF E +E   +   + ET +E++  I    + L++L+ ++L L
Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGAL--EDRETAQEFLQIIASETERLIHLVEDLLKL 254

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           SR+E  +  L    ++L +++    ++ + RA+EK +     + P L  V  D + + QV
Sbjct: 255 SRLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQV 314

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +NL+ NA+K+T + GRV +  G        I ++D G GI +  +P V   F +   A 
Sbjct: 315 FVNLIDNALKYTPV-GRVRIR-GEYQSGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRAR 372

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A  G GLGL I + I+  HGG+  + S+L +G      LP
Sbjct: 373 SRASGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 14/312 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           ++ I+  G L   L  +T       ++ + +L    E   L    + AK+        A 
Sbjct: 456 IVPIASGGDLLGVLFLYTDPNPTRSEARMVMLRQVGEMLALAILEDRAKASLKAAHDAAV 515

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +   AKS FLA+MSHE+RTP+N +LG  E+++   M    +    + +     S + LL 
Sbjct: 516 DAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDM----SREQWDLVETASNSAESLLE 571

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362
           +IN ILD S++EAG+ E+  +  +L D+V E   +L  RA +K +E+   +   L  +W 
Sbjct: 572 IINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWI 631

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIP 418
            D   +RQ++ NLL N+VKFT   G V V V       +       I+D G GIA     
Sbjct: 632 GDPTRIRQILTNLLGNSVKFTER-GEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQA 690

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV- 477
            +   F Q   +      G GLGL I ++++   GG   + S    G      LP   + 
Sbjct: 691 RLFQPFTQADGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLEPLP 750

Query: 478 ---LNFIPEDNH 486
                 +P+ +H
Sbjct: 751 GASAPALPDFSH 762


>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 902

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 13/341 (3%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
           I ++A  +  +   A     L     L      P  ++          +       +L  
Sbjct: 55  INRTALAVFGVEAGAGLPATLGGLARLEGDGPLPGALSRGLAGADLAALSGEFWELLLRR 114

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A    T +   L   ++            I+  ++ +    +  + AE    AKS FLA+
Sbjct: 115 ADGSATQVEAGLTVVDMSGERTGTLFIRDISNRKLQEGKLKQAMEEAESATRAKSDFLAN 174

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NAI+G + +     + P      ++Y+  IH SG+HLL +IN+ILD S+IE
Sbjct: 175 MSHEIRTPMNAIIGLAHLALRTGLDP----KQRDYLQKIHNSGKHLLGIINDILDFSKIE 230

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           AG+ +L  +   L  ++     +L  +A+ K +E+   I P L   +  D   + Q+++N
Sbjct: 231 AGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELIFDIGPGLDRSLIGDPLRLGQILIN 290

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
             +NAVKFT   G V V       RG     +  + D G G++  +   +  SF Q   +
Sbjct: 291 YANNAVKFTER-GEVTVRARCREERGDSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTS 349

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                 G GLGL I++ +    GG+  + S+  +G      
Sbjct: 350 TSRKYGGTGLGLAISRKLAEMMGGEVGVDSEPGKGSTFWFT 390


>gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
          Length = 1187

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 154/334 (46%), Gaps = 12/334 (3%)

Query: 161  YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
              +F    P    L  QA +  H     +     +    +   T+    + + +L     
Sbjct: 730  ARMFSQLPPGSYRLQLQASLGHHSSWSPVQEFGFSVAPPWWRTTWATLVAVLLVLLLIVG 789

Query: 221  KDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               L      +++        R+ AE+ ++AKSRFLA++ HE+RTP+  +LG SE++   
Sbjct: 790  GGWLYRRRVRSRAQWQLALHKRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDT 849

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            ++        + Y+  I R+G HLL L+N+ LDL+RIEAG+ EL       + +  E   
Sbjct: 850  SLDS----RQRSYVESIRRAGDHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAG 905

Query: 338  MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ++   A+++ +    ++ P +  +V  D   +RQ++LNLL NAVKFT   G V + +G  
Sbjct: 906  LMAPVAEQRGLAFHLRVAPEMPAAVRGDPGRVRQILLNLLGNAVKFTDR-GEVVLELGTV 964

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQ 455
            S  G    ++D GPG++E +   +   F Q   A   S   G GLGL I Q +    GG+
Sbjct: 965  SPEGLVFVVRDTGPGLSEEQKARLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGR 1024

Query: 456  FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              + S L  G      LP        P+    ST
Sbjct: 1025 IEVDSTLGHGTAFRVQLPL--PTAAAPDPQPRST 1056


>gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
 gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
          Length = 811

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 8/259 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  ++  +L    +   +    AE+ N AK+ FL+ MSHE+RTP+NAI+G + +     
Sbjct: 265 TELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMTTIAAAYI 324

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +   + +  I  S +HL+ LIN+ILD+S+I  G+ +++     L  +V     +
Sbjct: 325 ---DDRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVVESVSSI 381

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +  +A +K +     +   + +S+  D   + Q++LNLLSNA+KFT  GG + + +    
Sbjct: 382 VYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRMEIRQIK 441

Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G G+A+  I  +   F Q   +      G GLG+ I ++++   G
Sbjct: 442 KNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKNLVTLMG 501

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G   ++SK  +G      L
Sbjct: 502 GTISVKSKPGKGTTFTVEL 520


>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
 gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
          Length = 916

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 15/320 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--- 220
                 + V++     +    +   +   L   L  F  +        +     Q E   
Sbjct: 306 LWLTIGLTVSIMAALFILSINITRRIIFFLNNTLETFERLENQEESDTLASTEGQDEFSH 365

Query: 221 ----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                + LI E    +      ++ AE  N+AKS FLA+MSHE+RTPLN I+G S ++  
Sbjct: 366 FGKKMNKLIHERRENEHRMLAAKEEAERANVAKSSFLANMSHEIRTPLNGIIGMSGILSE 425

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P+     ++Y+  I  S Q LL LIN+ILD+S+IE+G   +S  + +L +I  + I
Sbjct: 426 SNLDPI----QRDYLNTIDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTI 481

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
            ++  +A+EK++++  +  P +  +   D+  +RQ+++NL+SNAVKFT  G  R+ + V 
Sbjct: 482 AIVMSKAKEKDLQLQIRFSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVT 541

Query: 395 WTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               +    Y +I D G GI + +  ++   F Q   ++     G GLGL I+  ++   
Sbjct: 542 EIDEQRCSIYFAIVDTGIGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELM 601

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   I S+  +G      +
Sbjct: 602 GGNIEIDSEKGKGSRFFFTI 621


>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
 gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
          Length = 917

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 173/402 (43%), Gaps = 20/402 (4%)

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
           Y   +    + +  D+   E      W+ V     G+       +  G  +     +  +
Sbjct: 125 YLLPVFGRHRNLAGDVIPDEADRLLGWVEVELSHNGM-------LLRGYRSLFASLLLVA 177

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG--MLATALSFF 200
             L+   +++   +  +  A        V  L    + +      S     + +      
Sbjct: 178 LGLICTAALALRISRTI-NAPIGQIKQAVAQLKDGNLETRLPPLGSQELDQLASGINRMA 236

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +     +    I     +    +  +E+     D  RK A E +  KS FLA+MSHE+
Sbjct: 237 ETLQNAQEELQHSIEQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEI 296

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN ILGF+ +++   + P       +Y+G I +S  +LL +INEILD S+IEAG+  
Sbjct: 297 RTPLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLV 352

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNA 379
           L     +L D++++ + +L   A  K +E+       +  S+  D   ++Q++ NL+SNA
Sbjct: 353 LDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLISNA 412

Query: 380 VKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT  G  V    +           IS++D G G++  ++  +  +F Q   ++     
Sbjct: 413 IKFTREGTIVARAMIEDEQEDNVQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPG 472

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476
           G GLGL I++ ++   GG+  + S   EG E      LP TR
Sbjct: 473 GTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 514


>gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas
           chlororaphis]
 gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169
           L W  L L     +  G  +     +  +A L    L+AL +    N  L          
Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLMLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L T+  +        LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            E      LP TR
Sbjct: 502 SEFWISLRLPKTR 514


>gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 929

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 130/266 (48%), Gaps = 13/266 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E  K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I   T    ++
Sbjct: 502 ITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DD 557

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   +  + + LL LINEILDLS+IEAG  E + + + L  +  E    L+ R  
Sbjct: 558 EERKNYYDIVEANNERLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRC- 616

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
              +E+  +       +  D+  + QV+ NL+ NA KFT  G    V+ G    G     
Sbjct: 617 PMGVELVYEASDEDIVIEGDKNRIFQVVSNLIGNAFKFTTNGS---VSYGYRRKGSEIEF 673

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F +      +  QG GLGL I ++I+   GG   + S++ 
Sbjct: 674 HVSDTGIGIEADKLSKVFERFVKV----NNFAQGTGLGLSICKTIIERLGGTISVSSEMG 729

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489
           +G   +  LP +           E+ 
Sbjct: 730 KGTTFLFTLPLSESKKETAAKQKETA 755


>gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 167/434 (38%), Gaps = 25/434 (5%)

Query: 49  SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108
           +      +   +    +        +   + +                 ++        I
Sbjct: 331 AGFRAALIATFSWRSLFDDVAARLGIAIGLAVLAIGTVWFAIVMFDRRALRPVNRR--TI 388

Query: 109 WLLVGQIAIGLCW--TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            L+  +             L+       + +   ++A    A          +  A   S
Sbjct: 389 RLIESEALNRTLIRTAPAGLMLLSLANGDTMVRNEAAQAFDATGTEPSLGKRIWQAYHGS 448

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                               ++    +  A     Y+  H+ ++  + +         I 
Sbjct: 449 IVG-----------GRTPRVVTHELPVGLAGDGTAYLAAHIVRTRYRGVDVLLCTLTDIT 497

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +  + +  E R+ AE+ N AKS FLA+MSHE+RTPLNAI+G  E++E   +       
Sbjct: 498 AHKQMEGMLREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPL----PAE 553

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  +  S   LL +IN++LDLS++E+ +  L      L  ++R+   + +  A  +
Sbjct: 554 ERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIFRPLAAAR 613

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQ 401
           ++ +  +IDP L+     D   +RQ++ NL+SNA+KFT   G V +    T       G 
Sbjct: 614 HLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTER-GSVTIEARPTGAVGQAHGV 672

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GIA   +PT+   + Q   +I     G GLGLP+ + +     G   + ++
Sbjct: 673 EVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVETR 732

Query: 462 LREGVEVIAILPNT 475
             EG   I  LP  
Sbjct: 733 PGEGATFIVSLPLR 746


>gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1
           str. Okra]
 gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 569

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI+I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-IPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 916

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides
           posadasii str. Silveira]
          Length = 1285

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 684 EMDELKRKINKMVSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 743

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 744 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 800

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 801 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 859

Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                 S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 860 TISKSTRELCQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 919

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 920 SKRLVNLMGGDVWVTSEFGHGSTFHFT 946


>gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 720

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 128/249 (51%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +    + + +AEE N  KS FLA++SHE+RTPLNAI+GFS ++     G   +
Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  I  +   LL LI+++LDLS+IEAG  E   + I +  +  E     +LR +
Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRLRNK 588

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  I I      +   V AD   + QV++NL++NAVKFT   G +            +  
Sbjct: 589 KSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  +  +  +F +      S  QG GLGL I ++I+   GG+    S+L +
Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 704 GSTFWFTLP 712


>gi|312885615|ref|ZP_07745251.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301927|gb|EFQ78960.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 783

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/453 (22%), Positives = 174/453 (38%), Gaps = 30/453 (6%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPI------FPMWSLITLAVYAANLSLGKKVMNSD 97
           S  R   I  L    +   G +F    I        +   +   VY+  +          
Sbjct: 191 SRRRSEAIDLLLTGCLFMGGLFFLGLYIFGNRDKAILLFSLYSIVYSYRIIGVNNYELHT 250

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK--SATLLIALSISALS 155
           I     +   I L    +  G+    L  +           +Y   S   L + + + L 
Sbjct: 251 ILPDISWYVTIRLEYISLFAGIGLFGLYTLYLYPRDIYKPIVYVIGSICFLFSAASAVLP 310

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-------------ISLAGMLATALSFFTY 202
                  +       V  L     + +                  SL  + + +L  +  
Sbjct: 311 PLYFTQLINPFLIVTVFCLVFIPYVYIKAYRNKRPGSGYALASSFSLMVVFSISLFHYWA 370

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   L   N            LI    V+ +     R +AE+   AKS FL++MSHE+RT
Sbjct: 371 IIGPLQLLNFAGYVSFFFLQSLILSHRVSFA-LKRARAQAEQGLKAKSEFLSTMSHEIRT 429

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN+++G S ++              E++  +  S  +LL ++N+ILD ++IEAG+    
Sbjct: 430 PLNSVIGMSHLLLKT----NPRPDQVEHLDVMLFSANNLLAIVNDILDYNKIEAGKIVFE 485

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
            + + +  I    +  LQ  A +K I +  ++D +L+  V  D   + QVI NL+ NA+K
Sbjct: 486 HTEMDIASIAGNIVAGLQNSANDKGIGLKLQVDSALNNKVIGDPTRLFQVISNLVHNAIK 545

Query: 382 FTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  GG  V +TV   +     +S  +KD G GI++ +   +   F Q   +      G 
Sbjct: 546 FTQAGGVEVGITVKGQTEHDVTLSIWVKDTGIGISKDKQKLIFERFTQADSSTSRGFGGT 605

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I++ I+        + S+  +G     I
Sbjct: 606 GLGLAISKRILELQNSTLQLESEEGKGSTFYFI 638


>gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 1008

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 16/335 (4%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++  + +  +  + P  +  +     +      + S             +  ++F Y  +
Sbjct: 213 IVVTADNVPAPNISPPGILGALLERQLEPVITPVYSGAEDSEYTFNFRFSPSAYF-YEAH 271

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTP 263
               + + I+         I  L++ + L D+   RK A   N  KS FLA+MSHE+RTP
Sbjct: 272 RSGITRLFIVLVLVIGGMFIYLLKMRRVLHDQVKARKLALSSNQIKSDFLATMSHEIRTP 331

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG +E+I    +    ++  + Y   I  SG  L  +I++ILD S+IEAGR EL  
Sbjct: 332 MNGVLGMAELI----LSAKPSKKIESYAETILSSGNSLQRIIDDILDFSKIEAGRMELER 387

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              ++++++ E   +  +RAQ+K +EI    DP + S V+ D    RQV+ N +SNA+KF
Sbjct: 388 VDCNVVELIDETGQLFAMRAQDKGVEISIFSDPDMPSNVFLDPVRFRQVLDNFVSNAIKF 447

Query: 383 TAIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           T   G + V V                + + D G GI+E     +   F Q   +     
Sbjct: 448 TNT-GSIQVKVFEIPDESLDEDGIRFRVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKF 506

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G GLGL I QSI+    G+  + S   EG     
Sbjct: 507 GGTGLGLSICQSIIELANGKIGVDSVEGEGSTFWF 541


>gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 720

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +    + + +AEE N  KS FLA++SHE+RTPLNAI+GFS ++     G   +
Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  I  +   LL LI+++LDLS+IEAG  E   + + +  +  E     +LR +
Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNK 588

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  I I      +   V AD   + QV++NL++NAVKFT   G +            +  
Sbjct: 589 KSGICICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  +  +  +F +      S  QG GLGL I ++I+   GG+    S+L +
Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 704 GSTFWFTLP 712


>gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
 gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
          Length = 991

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 15/269 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 606 IITERKKMEQELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK 665

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY+  I  +   LL LI++ILDLS+IEAG  +L  S + + D++RE     QL+ 
Sbjct: 666 ----QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKL 721

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  N+++             ++  + Q+I+N ++NA+KFT+  G +            Y 
Sbjct: 722 KSDNVKLEFVAPEEPCFANIEKNRLSQLIINFVTNAIKFTSQ-GSIRFGYERQ-NNELYF 779

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + ++ ++   F +      S  QG GLGL I ++++ + GG+  + S+  
Sbjct: 780 YVTDTGCGIPQDKLDSIFGRFVKL----NSFAQGTGLGLSICRTLINHMGGKIGVESEEG 835

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           +G      LP  ++     E   ++ Q K
Sbjct: 836 KGSTFWFTLPYKQI-----EAIEKAPQKK 859


>gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1045

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GLISFGYKLRDDNTLWFY 833

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP        P +  +
Sbjct: 890 GSRFWFTLPFQPKKELFPSEEQK 912


>gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 912

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 8/273 (2%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +   D+L A++    +  +  +   EE   AKS F+A MSHE+RTP+NA++G S++   
Sbjct: 157 LKQINDNLDAKVRERTAALELAKAELEEALEAKSSFVARMSHEIRTPINAVIGLSDLALN 216

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            +    N++  ++Y+  I  SG  LL+L+N +LD S+IEAG+        S   ++R  +
Sbjct: 217 TS---PNHKEQQDYLQKIRDSGDILLSLVNNVLDFSKIEAGKLTAESVCFSTEKLIRTTV 273

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
            M    A  K +E+   I   +   +  D   ++Q+++NL+SNA+KFT  G   + +   
Sbjct: 274 NMNVFGAYAKKLELVTDIADDIPEYLLGDPLRIQQILVNLVSNAIKFTESGSIVIRLRCN 333

Query: 395 WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              G    +   + D+G GI+  ++  +   F Q   ++     G GLGL I + +    
Sbjct: 334 KLDGENILLQCEVSDSGIGISSTQLEQLFCPFTQADNSVTRVYGGTGLGLTITRQLCELM 393

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            G+  + S + +G     +LP  +V    P++ 
Sbjct: 394 NGEIKVESDVGKGSTFTVLLPL-KVPTLQPKNA 425


>gi|167746930|ref|ZP_02419057.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
 gi|167653890|gb|EDR98019.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
          Length = 812

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E E  K+   +  + A   N AK+ FL+SMSH++RTP+NAI+G + + +     P   +
Sbjct: 279 EEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---D 335

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I+ S +HLL+LINE+LD+S+IE+G+  +S   ISL D++   + M       
Sbjct: 336 KIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLING 395

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398
           K+ +    I   +   V AD   +RQV++NL+SNAVK+T  GG + + +           
Sbjct: 396 KHQQFQMSIGHVNHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKS 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           + ++I I D G GI+E  +P +   F +   +  S  QG GLG+ I ++I+    G   +
Sbjct: 456 QYEFICI-DTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTISV 514

Query: 459 RSKLREGVEVIAILPNT 475
            SK+  G +    +P  
Sbjct: 515 ESKIGTGSKFTVSVPLE 531


>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
 gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
          Length = 698

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 15/315 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL---IAELEVAKSLS 235
            +        L  +   A      +   +       L  +    +L    A  + A +  
Sbjct: 252 WLVWDPKQPGLEVVRQIAPLVLPGVLLLMVAGLALALRVRQVLRELHASEAGQKAAMADV 311

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E R RAE  +LAKS+FLA+MSHE+RTPLN +LG ++V+E   +G      ++E++  I 
Sbjct: 312 VEARDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGSP----HREHLKIIR 367

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+ LL ++N++LDLS+IEAGR+EL +    L + +        L A++K++   + I 
Sbjct: 368 DSGETLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIA 427

Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           P     W  D   +RQV+ NL SNAVKFT   G++ +TVG TS      ++ D G GIA 
Sbjct: 428 PDALGAWCGDSVRLRQVLSNLASNAVKFTHE-GQIRLTVGATSEG-LTFTLTDTGIGIAP 485

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             I ++   F Q   +      G GLGL I++ ++   GG   + S   +G   +  LP 
Sbjct: 486 DRIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLPF 545

Query: 475 TRV-----LNFIPED 484
            RV     L   PE+
Sbjct: 546 ERVGAVDYLAPAPEE 560


>gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1784

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I R+
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K IE+   + P+
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
            +   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G G+
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             E +   +  SF Q   +      G GLGL I + ++   GG+  + S+   G      
Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265


>gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 11/268 (4%)

Query: 219 AEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            + DD     E  ++   E     + AE  N  K  FLA +SHELRTPLN ILG+S++++
Sbjct: 593 TDIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLK 652

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               G L+ +   E +  I R+ +  ++LI+++LD+SRI  G+  L+ + ++L DI+   
Sbjct: 653 T---GKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGKLTLNVTTVNLADIISAA 709

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  + L A  K I +   I+P++  V  D   ++Q++ NLLSNA+KFT  GG V V +  
Sbjct: 710 LETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSNAIKFTPQGGEVVVQLEQ 769

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G   +I + D G GI    +P +   F Q   +      G+GLGL I + ++  HGG 
Sbjct: 770 I-GSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGLGLGLAIVRHLVELHGGT 828

Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIP 482
               S    +G  +  ILP    ++ +P
Sbjct: 829 VEADSPGEGQGTTLKVILPL---ISSLP 853


>gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1093

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +   I     E+  +  E E         R+ AE  N  K  FLA +SHELR+PLN ILG
Sbjct: 678 TVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPILG 737

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           ++++++   +   +  T ++ +  I R+ +    LI ++LD+SRI  G+  L+ +++SL+
Sbjct: 738 WAQMLKNYEL---DQPTTQKALCIIERNARLQAELIEDLLDVSRILRGKLNLNTTSVSLV 794

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++   +  ++L AQ K+IE+  +++  +  V  D   ++QV+ NLLSNAVKFT  GG+V
Sbjct: 795 VVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQV 854

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +    G    I +KD G GI    +P +   F Q   +      G+GLGL IA+ ++
Sbjct: 855 EIELEQIHGG-VEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLV 913

Query: 450 ANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDN 485
             HGG+    S    +G   I  LP   +    P D 
Sbjct: 914 ELHGGKIWAESLGENQGATFIVNLPL--LPQEFPNDT 948


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
          Length = 1177

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 14/312 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           ++ I+  G L   L  +T       ++ + +L    E   L    + AK+        A 
Sbjct: 456 IVPIASGGDLLGVLFLYTDPNPTRSEARMVMLRQVGEMLALAILEDRAKASLKAAHDAAV 515

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +   AKS FLA+MSHE+RTP+N +LG  E+++   M    +    + +     S + LL 
Sbjct: 516 DAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDM----SREQWDLVETASNSAESLLE 571

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362
           +IN ILD S++EAG+ E+  +  +L D+V E   +L  RA +K +E+   +   L  +W 
Sbjct: 572 IINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWI 631

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIP 418
            D   +RQ++ NLL N+VKFT   G V V V       +       I+D G GIA     
Sbjct: 632 GDPTRIRQILTNLLGNSVKFTER-GEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQA 690

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV- 477
            +   F Q   +      G GLGL I ++++   GG   + S    G      LP   + 
Sbjct: 691 RLFQPFTQADGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLEPLP 750

Query: 478 ---LNFIPEDNH 486
                 +P+ +H
Sbjct: 751 GASAPALPDFSH 762


>gi|319427233|gb|ADV55307.1| hybrid periplasmic sensor histidine kinase, BarA [Shewanella
           putrefaciens 200]
          Length = 933

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +     +L+ + ++ L  F L   V     P+   +   A +    LD  L G L 
Sbjct: 180 HRAAVAAFIMVLLGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236

Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             L         +         +    I    ++  + + ++E+     D  +KRA E +
Sbjct: 237 GELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +      +  +YI  I RS  +LL +IN
Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 352

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S++EAG+  L      L + + + + ++   AQ K +E+   I P++   V  D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPNVPDHVNGDA 412

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + Q+I NL+ NA+KFT  G   V + +   S     +   + D G GI E +   +  
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGIDESQQDFLFQ 472

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +FGQ   +I     G GLGL I + ++   GGQ    S + +G      LP 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 524


>gi|315051696|ref|XP_003175222.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
 gi|311340537|gb|EFQ99739.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
          Length = 1321

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 22/298 (7%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +I+ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKKKINKMISNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 870 KHEPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            GLGL I++ ++   GG   + S+   G          +    +         YK ++
Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFTCVVKKADQSLDVIASSLVPYKGHS 987


>gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
 gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
          Length = 907

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 9/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + E  K+     +++AEE    K +FLA+MSHE+RTPLN I+GF++++  +       
Sbjct: 382 ITKREEIKNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKILLRD----NAT 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +  I  S   LL ++N+ILDLS+IEAG+  L ++ + L ++V   +   +LR  
Sbjct: 438 KKQRHQLNAIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRIG 497

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK   +  + D ++   +  D   + Q++LNL+ NA+KFTA+GG ++V +          
Sbjct: 498 EKEQTLNTRFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENKV 557

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GI   +I  +   F Q S        G GLGL I + ++    G   ++
Sbjct: 558 NVEISVSDTGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISVK 617

Query: 460 SKLREGVEVIAILPN 474
           S+   G      +P 
Sbjct: 618 SQESIGSTFTLTIPL 632


>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 902

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTPLN I+G + +     +     +  +E +  ++   + LL +I
Sbjct: 412 NRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTEL----TDEQRENLNIVNSCAELLLRVI 467

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILD S+IEAG+  L        +++ +      ++A EK + +   +   +  +   D
Sbjct: 468 NDILDYSKIEAGKMTLENVKFDFFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGD 527

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTV 420
              ++QV+ NL+SNAVKFT I G V + V              ++ D G GI   ++  +
Sbjct: 528 PGRLQQVLNNLISNAVKFTDI-GEVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNML 586

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             SF Q   +I     G GLGL I++ ++   GG+  + S+  +G      
Sbjct: 587 FKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWVESQKGKGSTFYFT 637


>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 902

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTPLN I+G + +     +     +  +E +  ++   + LL +I
Sbjct: 412 NRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTEL----TDEQRENLNIVNSCAELLLRVI 467

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILD S+IEAG+  L        +++ +      ++A EK + +   +   +  +   D
Sbjct: 468 NDILDYSKIEAGKMTLENVKFDFFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGD 527

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTV 420
              ++QV+ NL+SNAVKFT I G V + V              ++ D G GI   ++  +
Sbjct: 528 PGRLQQVLNNLISNAVKFTDI-GEVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNML 586

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             SF Q   +I     G GLGL I++ ++   GG+  + S+  +G      
Sbjct: 587 FKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWVESQKGKGSTFYFT 637


>gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88]
          Length = 1288

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 661

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 13/260 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D I E E+ ++L    ++ AE  + AKS FLASMSHE+RTPL  ILG +++++   +G 
Sbjct: 146 RDTIREREIQRNLLS-AKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLGA 204

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 ++Y+     +G++LL+LIN ILDLS+IEAG+ E+      L  ++R+   ++ L
Sbjct: 205 ----EQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMAL 260

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGR 399
           RA +K +E   ++       V  D   +RQ+++NL+ NA+KFT   G+V V  V W +  
Sbjct: 261 RAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTER-GKVTVEAVRWPAEE 319

Query: 400 GQY-----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G GI   +   V   F Q   +      G GLGL I++ ++   GG
Sbjct: 320 SAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGG 379

Query: 455 QFLIRSKLREGVEVIAILPN 474
              + S+  EG      +P 
Sbjct: 380 TIRLASREGEGSRFTVEIPL 399


>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 948

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 123/254 (48%), Gaps = 7/254 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +    +LE      DE R+ AE    AKS FLA MSHE+RTP+N +LG   ++    +  
Sbjct: 390 EKYAQDLEFNNWALDEAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTEL-- 447

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  + ++     S + LL LIN+ILD S+IE+G+  L     +L   + E I  L +
Sbjct: 448 --DQDQQHHLEIAQGSAKSLLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAI 505

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSG 398
           RAQEK++E+   I     + +  D   + QV+ NL+ NA+KFT  G  +         + 
Sbjct: 506 RAQEKSLELTLDISQIKPANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKLTAKNNN 565

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                SI+D G G+ + ++  +  +F Q   +      G GLGL IA+ +     G   +
Sbjct: 566 HRLTFSIQDTGIGMKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISV 625

Query: 459 RSKLREGVEVIAIL 472
            SK   G   +  L
Sbjct: 626 TSKENIGSHFVVDL 639


>gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1003

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 14/273 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R  AEE + AKSRFLA+MSHELRTPL  I+G++++I L T    
Sbjct: 459 HNITERKQTEEALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYADLITLATQQGE 518

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   ++ I  +  +G+HLL +IN++LDLS+IEAGR E+  +  S+  +  E +  + L 
Sbjct: 519 FN-RIRDDITRVRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVASMDLL 577

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           AQ +   +   IDP++  + +D+  +RQV+ NL+ NA KFT   G V VT+  ++     
Sbjct: 578 AQTRRNTLILTIDPTVGVMHSDDVRVRQVLYNLVHNACKFT-EDGVVTVTIARSALESTV 636

Query: 398 -----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      +I D G G+ + ++  +   F Q          G GLGL +++ ++   
Sbjct: 637 HVNGHSARIVFTISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHLVRML 696

Query: 453 GGQFLIRSKLREGVEVIAILP--NTRVLNFIPE 483
           GG   + SK   G   +  LP    +V    PE
Sbjct: 697 GGDITVTSKPGVGTTFVVTLPENPAQVAEPAPE 729


>gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 684

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 181/438 (41%), Gaps = 17/438 (3%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R   I+      +  +             +L             K       ++G    
Sbjct: 1   MRADGIMVAMNGFLCLVCFALAPLRNTGAAALAIGVPTLLISLWLK--HRHSGELGTRLY 58

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
                ++    I      +T      +    + +Y      I  +   +           
Sbjct: 59  MACGFMIYTALIIHQNGGVTEAHFSAFGLIGVLLYYRDWRTILTATVFIYLHHFVLGYGQ 118

Query: 166 SF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           +  +P+ V   +          +     +        ++    +++   +++ +  + +L
Sbjct: 119 TLGWPIYVFADSHFWRMFVSHVLYFLPFVGMMSYLSIWLRREGYENQQDLIALRQAEQEL 178

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               EV +   +E        +  A+  N AKS FLA+MSHELRTPLN ILG+++++   
Sbjct: 179 TQFNEVLEKRVEERTFELQAAKLEADRANQAKSEFLANMSHELRTPLNGILGYAQILSR- 237

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 +   K  +G I  SG HLL+LIN++LDL++IEAG+ EL  +  SL  +++  + 
Sbjct: 238 --SKTLSAEDKNGVGVILDSGSHLLSLINDVLDLAKIEAGKLELFPTTTSLPSLLQRVVD 295

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVG 394
           + Q++A +K ++   K       + ADEK + QV++NL+ NA+KFT  G    ++ V  G
Sbjct: 296 ICQIKATQKGLQFLYKPSQLPEGILADEKLLSQVLINLIGNAIKFTDAGTVTFQIEVHKG 355

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G GIAE +I  +  +F Q     K   +G GLGL I+Q I+   GG
Sbjct: 356 SDGQVSLMFKVIDTGRGIAEEDIDKLFEAFEQVGDHHK-QSEGTGLGLAISQRIVQLMGG 414

Query: 455 QFLIRSKLREGVEVIAIL 472
              I SK  +G E   IL
Sbjct: 415 TIHINSKPGDGSEFWFIL 432


>gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 633

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/332 (29%), Positives = 154/332 (46%), Gaps = 15/332 (4%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILS 216
            A+F   F  V+A      +S  + DI  A        + T +       L   +  I +
Sbjct: 172 LALFALLFTFVLARRLAGSLSQPIRDIGNAVKAIQDGDYKTPLPIVDDTELGALSQHINN 231

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                +    E   A +   +TR+ AE+ N AKS FLA MSHELRTP+N +LG  +++E 
Sbjct: 232 LAQALEQASREQHQAMAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLET 291

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             M     E   EY      S +HLL +IN+ILD SRIE    EL     +L +++  C 
Sbjct: 292 TDM----TEEQVEYAALASESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACA 347

Query: 337 IMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
              Q  A ++ + +  +I   L    V  D   +RQ+++NL+ NA+KFT   GRV +   
Sbjct: 348 QSFQHSAAQRGLALQLRIPEDLRDLQVQGDPTRIRQILVNLVGNALKFTEQ-GRVSIEAQ 406

Query: 395 WTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           W S   + +    +++D+G GI+   +  +  +F Q   +I     G GLGLPIA+++  
Sbjct: 407 WQSLDHELLWFTCAVRDSGIGISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAE 466

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             GG    +S+   G      +P       +P
Sbjct: 467 RMGGTLRAQSEEGRGSVFTLEIPLALYKQALP 498


>gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 955

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 7/286 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +   I     E+  +  E E         R+ AE  N  K  FLA +SHELR+PLN ILG
Sbjct: 542 TVQAICRDITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILG 601

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +++++   T+ P    T+++ +  I R+ Q    LI ++LD+SRI  G+  L   +++L 
Sbjct: 602 WAKLLNTHTLEP---ATHQKALSIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLG 658

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            I+   I  ++L AQ KNI+I  K+DP++  V  D   ++Q++ NLLSNAVKFT  GG+V
Sbjct: 659 FIIDSAIETIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKV 718

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +    G    I + D G GI    +P +   F Q          G+GLGL IA+ ++
Sbjct: 719 EIELNSL-GNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLV 777

Query: 450 ANHGGQFLIRS-KLREGVEVIAILPN--TRVLNFIPEDNHESTQYK 492
             HGG     S    +G   I  LP     V +        S  +K
Sbjct: 778 ELHGGTIKAESLGEGQGATFIVKLPLIPETVQSQKQSSVSPSKTHK 823


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/398 (24%), Positives = 167/398 (41%), Gaps = 25/398 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +LT +   T  IA+ ++ ++  M    +   
Sbjct: 1378 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1437

Query: 167  FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L TQ              A  L T+          L ++N ++          
Sbjct: 1438 SQSLAEELQTQQNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQTNAELEEKAELLAMQ 1497

Query: 225  IAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ R     +AE+    +  KS FLA+MSHELRTPLN++L  ++++   
Sbjct: 1498 KKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADN 1557

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                L  +   EY   I+ +G  LL LIN+ILDL++IE+G   +  + + L+++  +   
Sbjct: 1558 IDNNLTTKQV-EYSQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQIER 1616

Query: 338  MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  AQ K +    +  P L + ++ D K ++QV+ NLLSNA KFT   G V + +   
Sbjct: 1617 TFRQVAQSKGLAFTIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQ-GEVRLQIAVA 1675

Query: 397  SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                                S+ D G GIA  +   +  +F Q   +      G GLGL 
Sbjct: 1676 KQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLS 1735

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I++ I    GG+  + S+  +G       P   V    
Sbjct: 1736 ISREIARLFGGEIKLTSQPGQGSTFTFFFPQLNVEPTS 1773


>gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 762

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 104/456 (22%), Positives = 184/456 (40%), Gaps = 21/456 (4%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
             +     +  +    ++++A +           +  L T     A     ++ ++    
Sbjct: 38  QQLAGREGLPLVTFFAIVVLAGLAHLTGAPIFISLALLATGLAGLAMHLHARRSVHRTAV 97

Query: 100 IGEVYVWRIWLLVGQIAIGLCW----------TLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           + +    R    +  +A  + W           L+  +       +       A  + A 
Sbjct: 98  LLDETSARSRAEIETLADRM-WEMQESEERFRGLIDALGDLVIHRDRDGYIVYANKVFAD 156

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +       L           V  +   A      L  +   +   +   +        +
Sbjct: 157 LVET-DQRDLAGKTLAELGIEVGIVPDAAFSDHECLSSTDVAIRTPSGPRWFSWIELSVR 215

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                 +        I   + A+S     R+RAE  + AKSRFLA++SHE+RTP+N I+G
Sbjct: 216 DKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMG 275

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            + ++   ++ P      + Y+G I  S   LL LI ++LD S+IEAGR++     IS+ 
Sbjct: 276 MARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVR 331

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           +I    I +L  RA  K+I +   ++P +   + AD   +RQV+LNL+ NA+KFT  GG 
Sbjct: 332 EIADNIIELLAARAFAKDIGLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFTDGGG- 390

Query: 389 VHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           V V+V             +I D GPG+ + ++  +   F Q          G GLGL I+
Sbjct: 391 VLVSVARARTATTDRICFTIADTGPGLRDEDMERIFEEFEQADGTSTRTHGGAGLGLAIS 450

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           + ++A  GG   + S+L +G E +  +P T      
Sbjct: 451 KRLVAAMGGTISVSSRLGQGSEFVFEIPATAATEAP 486


>gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 569

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI+I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-VPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTPLN ++G  E++   T+    +E    Y+     S   LL LI
Sbjct: 597 SQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTL----DERQNRYVHIARSSAGTLLGLI 652

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N++LD S+IEAG+ EL      L  ++ +   M   RA EK +E+  +I P + + V+ D
Sbjct: 653 NDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGD 712

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTV 420
            + +RQV++NL++NA+KFT   G V +               IS+ D G GI       +
Sbjct: 713 PERIRQVLINLVNNAIKFTKQ-GEVILRAEQQVHSSGVSRMRISVIDTGIGIPADRSSQL 771

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F Q   +      G GLGL I + ++   GG+  + S    G      +P  
Sbjct: 772 FAPFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVPLE 826


>gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1041

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I++ +  +    E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++    +    
Sbjct: 656 IISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVL--- 712

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +EY   I  +   LL LIN+ILDLS+IEAG  E   S + +  ++ +    +  R 
Sbjct: 713 -EEKQEYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRV 771

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +N+ +  +       V   +  + QVI+NLL+NA+KFT   G +       + +    
Sbjct: 772 VNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQ-GSISYGYSCLNKKMLRF 830

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+  +   +   F +      S  QG GLGL I + I+ + GG+  + S++ 
Sbjct: 831 YVSDTGRGISVEQQEAIFDRFVKLD----SFAQGTGLGLSICRMIVDHLGGEMGVESEIG 886

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           +G       P       + ED
Sbjct: 887 KGSTFWFTFPYKAPEKPVRED 907


>gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
 gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
          Length = 1288

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V   
Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDFVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              S+ D G GI E ++  +  +F Q   +      G GLGL I++ 
Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   + S+   G      
Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1041

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I++ +  +    E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++    +    
Sbjct: 656 IISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVL--- 712

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +EY   I  +   LL LIN+ILDLS+IEAG  E   S + +  ++ +    +  R 
Sbjct: 713 -EEKQEYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRV 771

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +N+ +  +       V   +  + QVI+NLL+NA+KFT   G +       + +    
Sbjct: 772 VNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQ-GSISYGYSCLNKKMLRF 830

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+  +   +   F +      S  QG GLGL I + I+ + GG+  + S++ 
Sbjct: 831 YVSDTGRGISVEQQEAIFDRFVKLD----SFAQGTGLGLSICRMIVDHLGGEMGVESEIG 886

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           +G       P       + ED
Sbjct: 887 KGSTFWFTFPYKAPEKPVRED 907


>gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 919

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 174/382 (45%), Gaps = 20/382 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L W  + L   G     Y  ++ S  L++A L +S L    +   +      +  A    
Sbjct: 150 LGWVEIELSHDGMLLRGYRNLFTSMLLILACLVLSGLLAMRMSRTINDPIARIKHA--VN 207

Query: 178 AIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNVKIL----SCQAEKDDLIAELEV 230
            +   H+ +   A     L         +   L  ++ ++         +    +  +E+
Sbjct: 208 QLKDGHLEERLPAMGSHELDELARGINRMAETLHSAHEELQHSIDQATEDVRQNLETIEI 267

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y
Sbjct: 268 QNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDY 323

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +S  +LL +INEILD S+IEAG+  L     +L D+V++ + +L   A  K +E+
Sbjct: 324 LSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLVQDTLTILAPAAHAKQLEL 383

Query: 351 -FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                  + SS+  D   ++Q++ NL+SNA+KFT   G + V       +       IS+
Sbjct: 384 LSLIYRDTPSSLVGDPLRLKQILTNLVSNAIKFTRE-GTIVVRAMLEDEQQDNAQLRISV 442

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++ T+  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 443 QDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 502

Query: 466 VEVIAILPNTRVLNFIPEDNHE 487
            +    L   +  +     + +
Sbjct: 503 SQFWISLSLPKAHDDSEAQSSQ 524


>gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 444

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 5/295 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLAK 249
           LA  L     I     ++ +     +   + LI    ELE  +        +  E +  K
Sbjct: 115 LAQVLRSAIRIYRAEMQAALAEEQLRESHEKLIRKNQELERQQEQIQMQNFKLLEASRLK 174

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTP+NAI+GFS+++     G L+N    + +  I  +G+HLL L+NE+L
Sbjct: 175 SHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSN-QQADMVERILNNGKHLLMLLNEVL 233

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D S++E GR +L      +  ++   +  ++  A  K + +  + D     ++ D   +R
Sbjct: 234 DFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAKKLSLLVQNDLQNPFIFNDPVRIR 293

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G + V V         I ++D G GIA  +   +  +F Q   
Sbjct: 294 QILTNLLSNAIKFT-ESGEIWVEVKELPTNQVAIIVRDTGIGIASRDFKRIFEAFRQVDQ 352

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            I     G GLGL I  S++   GG+  + SKL  G      LP    L  + +D
Sbjct: 353 TITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIGSMFKIELPRQITLQNVVDD 407


>gi|317471741|ref|ZP_07931081.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900764|gb|EFV22738.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 799

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E E  K+   +  + A   N AK+ FL+SMSH++RTP+NAI+G + + +     P   +
Sbjct: 266 EEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---D 322

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I+ S +HLL+LINE+LD+S+IE+G+  +S   ISL D++   + M       
Sbjct: 323 KIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLING 382

Query: 346 KNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398
           K+ +    I   +   V AD   +RQV++NL+SNAVK+T  GG + + +           
Sbjct: 383 KHQQFQMSIGHINHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKS 442

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           + ++I I D G GI+E  +P +   F +   +  S  QG GLG+ I ++I+    G   +
Sbjct: 443 QYEFICI-DTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTIGV 501

Query: 459 RSKLREGVEVIAILPNT 475
            SK+  G +    +P  
Sbjct: 502 ESKIGTGSKFTVSVPLE 518


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 3/265 (1%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           N K+     E D    ELE  K   +E  K  +  +  KS FLA+MSHELRTPLN+IL  
Sbjct: 464 NEKLHEQYKESDQKTKELEKIKEDLEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILIL 523

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++     G L+ +   E+   I+ SG+ LL+LIN+ILDLS+IE+G+ E+    + + D
Sbjct: 524 SQMLSENANGNLS-KKQIEHAETIYSSGKDLLDLINDILDLSKIESGKVEVYPEELFIED 582

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-R 388
           +           A++K ++    I     S+ + D++ ++Q++ NLLSNA KFTA G  R
Sbjct: 583 MRAFVERQFHPIAEQKGLQFNCYIHQETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVR 642

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             V   ++       SI D G GI   +  +V  +F QG         G GLGL I++ +
Sbjct: 643 FEVHPSYSESTKVVFSIIDTGIGIPPEKQESVFEAFHQGDGTTTREYGGTGLGLSISREL 702

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
               GG+  + S+  +G      LP
Sbjct: 703 ANLLGGRIEVVSEDGKGSTFSLYLP 727


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 10/319 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              L         + ++      + L +   ++   +    D++ + E  +  ++E R++
Sbjct: 104 GGPLPGGGFVSTYSDITERVAARHQLLRQMEELKEARQATLDMMEKAEANRKRAEELREK 163

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE    AK  FLA+MSHE+RTP+N ++G  +++    +    ++   +    +  S   L
Sbjct: 164 AESATKAKDMFLAAMSHEIRTPMNGVVGMIDLLTHTDL----DDEQMQMAATVRDSAFAL 219

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L +IN+ILD S+IEAG+ +L    +S++D+V      +   A  K ++     DP +   
Sbjct: 220 LTIINDILDFSKIEAGKMDLEMIPMSILDVVEGVGETMGPNACAKVLDFIAYCDPRIPAE 279

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYIS--IKDNGPGIAEGE 416
           V  D+  +RQ++ NLL NAVKFT   G+V + V           +   ++D+G G+   +
Sbjct: 280 VAGDQVRLRQILFNLLGNAVKFTEA-GQVTLRVDMNEISEGQATVRYQVQDHGIGMTPEQ 338

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q  ++      G GLGL I + ++   GG   + S   +G      L +  
Sbjct: 339 TANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVDMMGGTIDVESVPGDGSTFTVTLTHEI 398

Query: 477 VLNFIPEDNHESTQYKCYA 495
           V     E  H+    K  A
Sbjct: 399 VEEAGVETGHDLAGVKVLA 417


>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 651

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A S     R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 569

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A+ KNI+I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGEK-VPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1304

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E         + +  A+  + AKS FLA+MSHE+RTPLN ++GFS+++    +    N
Sbjct: 655 ISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----N 710

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET K+Y+  I+ SG  LL++IN+ILD S+IEAG+ EL     ++ DI  + I ++  +AQ
Sbjct: 711 ETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVLYQAQ 770

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K++E+   I+  L S +W DE  ++QV++NLL NAVKFT   G + + +   S      
Sbjct: 771 RKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFT-EHGEIELKIEKLSSYNDKI 829

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G GI + +   +  +F Q   ++     G GLGL I+ +++     +  ++
Sbjct: 830 TLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSKLQLK 889

Query: 460 SKLREGVEVIAIL 472
           S+  +G      L
Sbjct: 890 SEPGKGSIFYFDL 902


>gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
 gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
          Length = 968

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 11/305 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                + L      A +  T     +   ++ I   + E++D + E E            
Sbjct: 335 FRTRLVPLLNASRIAGAEGTAYVDGVIGVSMDITELR-EREDQLREQEKENERLLANAAA 393

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+E +  KS+FLA+MSHE+RTP+  ++G SE++    +    +E  KE   +IHRS   L
Sbjct: 394 AKEASRMKSQFLANMSHEIRTPIAGVIGMSELLSDMNL----DEEQKECAENIHRSANSL 449

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--- 358
           L +IN+ILD S++E+GR ++ E   SL  ++R+   M+   AQ K +     I   +   
Sbjct: 450 LTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQD 509

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             V  D   +RQ++ N+L+N++KFT+ G     V ++           S+ D G GI E 
Sbjct: 510 LRVMGDPGRLRQILTNVLTNSIKFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEE 569

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F Q   +      G GLGL I+++++    GQ  + SKL +G      +P +
Sbjct: 570 VRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIPFS 629

Query: 476 RVLNF 480
           R  + 
Sbjct: 630 RAPSQ 634


>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 918

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/440 (22%), Positives = 176/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V         + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDESGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP +  L     D 
Sbjct: 625 TRFSVDLPLSPALEAGEADE 644


>gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 596

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 8/312 (2%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDL 224
               V++       +S++    SL  ++  ++     +   L +      +    +   +
Sbjct: 209 FLRTVLILSGIVFGISLYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTI 268

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L   +    E  ++ E  + AKS FLASMSHE+RTPLN ++G ++++    +    +
Sbjct: 269 LNSLNTTQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----D 324

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  I  +G+ LLN++N+ILD S+I+AG+  + ++   L ++VRE   +  + A 
Sbjct: 325 AEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEAN 384

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E   +I+P +  V   D   +RQ++ NL+ NA+KFT   G V +++          
Sbjct: 385 TKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTET-GFVILSIK-KEEHSILF 442

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            IKD+G GI+  ++ ++   F Q   +      G GLGL I++ ++    G+  + S   
Sbjct: 443 QIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKG 502

Query: 464 EGVEVIAILPNT 475
            G       P +
Sbjct: 503 VGSTFWCSFPLS 514


>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
 gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
          Length = 941

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             A  F   +     +        +    +L   ++ A  L+DE    A+  + AKS+FL
Sbjct: 223 LLAEGFNNMLGQIQQRDEHLEEQVRNRTAELQLTMDKAIVLADE----AQAASKAKSQFL 278

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+N +LG +E+     +        +  I  I  SG+ LL +IN+ILD S+
Sbjct: 279 ANMSHEIRTPMNGVLGMAEMALDMNLTL----EQQNAIETIKSSGESLLTIINDILDFSK 334

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVI 372
           IEAG+ E+     +L  ++ E   +L  RA  K +E+   I  +L   + +D   +RQV+
Sbjct: 335 IEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSDPSRIRQVL 394

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            NLLSNA+KFT   G V++ V               ++D G G+   E   +   F Q  
Sbjct: 395 TNLLSNAIKFTEQ-GEVYLKVESLKDMGDSEQVRFLVRDTGIGMTAEERKKLFQPFSQAD 453

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            +      G GLGL I++ ++    GQ        EG E    L   +           +
Sbjct: 454 ESTTRKYGGTGLGLAISRQLVELMDGQINCTGNPGEGAEFWFDLTLKKTAGTRILAQTPT 513

Query: 489 TQYKC 493
            + K 
Sbjct: 514 QELKG 518


>gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622]
 gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 502

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 153/306 (50%), Gaps = 8/306 (2%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             V + + A +L         +     ++ +          +   +LE   +   +   R
Sbjct: 179 RRVPERTAAQVLVHFGQVLAALVASGQRAFLATQLHIEAMLETHRDLEANNARLAQANIR 238

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            +E +  KS FL ++SHELRTPL +I+G+SE++     G LN E    Y+  I   G+ L
Sbjct: 239 LKELDRLKSTFLGTVSHELRTPLASIIGYSEMLAEGLAGALNPEQLL-YVRTIVEKGESL 297

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SS 360
           LNLI+ ILDLS+IEAGR  L    + L  +++  +  +  +AQ K +E+  ++ P     
Sbjct: 298 LNLISSILDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLPPLPQPR 357

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAE 414
           + AD   +RQV++NLL+NAVKFT+ GGRV V +   + + +       + ++D G GI E
Sbjct: 358 LAADADKLRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDTGMGIRE 417

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +  SF Q   +      G GLGL I +S++  HGG+  + S+   G     +LP 
Sbjct: 418 DQFENIFQSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSVESEFGRGSRFTVVLPL 477

Query: 475 TRVLNF 480
              L+ 
Sbjct: 478 QPPLSE 483


>gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1205

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 12/256 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+ L+  +    + +++AE  N  KS FLA+MSHE+RTPLN ++GF++++    +   
Sbjct: 665 ADISALKAMEYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKSPL--- 721

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  ++Y+  I+ S   LL+LIN+ILD S+IEAG+  LSE  +++ ++    + M++  
Sbjct: 722 -NENQQKYMETIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHE 780

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A +KNIE+   I   +   + AD   +RQ+++NLLSNAVKFT   G + + V   +    
Sbjct: 781 AYQKNIEVLLNIPQKIDQYIIADGLRLRQILINLLSNAVKFTHD-GEIELKVEEQNSALH 839

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +    S++D G GI+E  +  +  +F QG  +      G GLGL I+  ++     +
Sbjct: 840 PNKKQFTFSLRDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESK 899

Query: 456 FLIRSKLREGVEVIAI 471
             +RS L  G      
Sbjct: 900 LEVRSTLGVGTTFYFT 915


>gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 607

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 8/312 (2%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDL 224
               V++       +S++    SL  ++  ++     +   L +      +    +   +
Sbjct: 220 FLRTVLILSGIVFGISLYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTI 279

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L   +    E  ++ E  + AKS FLASMSHE+RTPLN ++G ++++    +    +
Sbjct: 280 LNSLNTTQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----D 335

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  I  +G+ LLN++N+ILD S+I+AG+  + ++   L ++VRE   +  + A 
Sbjct: 336 AEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEAN 395

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E   +I+P +  V   D   +RQ++ NL+ NA+KFT   G V +++          
Sbjct: 396 TKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTET-GFVILSIK-KEEHSILF 453

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            IKD+G GI+  ++ ++   F Q   +      G GLGL I++ ++    G+  + S   
Sbjct: 454 QIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKG 513

Query: 464 EGVEVIAILPNT 475
            G       P +
Sbjct: 514 VGSTFWCSFPLS 525


>gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 609

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++  F+A++SHELRTPL  I  ++E +E   +   + +    ++G I      ++
Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++    L +    +++++ +       + ++K+I    ++ P +S+  
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D  G+ QV+ NL+SNA+K+T  GG + +    T      +S+KD G GI + ++  +  
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  HGG   ++S+L +G  V   LP 
Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601


>gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 743

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 158/364 (43%), Gaps = 29/364 (7%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           +  +       + F     +   ++  A++ +      +       L +   +   + + 
Sbjct: 108 LRLVVANRAYLSFFHGEVAITAGVTYDAVLKIVAKHEMVDMAGRDPLDWHHEMIARIRRE 167

Query: 211 NVKILSCQAEKDDLIAELEV-------------------AKSLSDETRKRAEEENLAKSR 251
           +++ +  +      I  ++                     +   +E R +AE  N AKS 
Sbjct: 168 HIEPIVLRTRNGHHIKLIDRWGEDGDLVCLAQDITHIIEREQELEEARNKAEAANRAKSA 227

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G +E++    +    NE  + Y+  I  SG+ LL +IN++LD 
Sbjct: 228 FLANMSHEIRTPMNGVVGMAELLGETEL----NEEQQLYVETIRSSGEALLTIINDVLDY 283

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA R +L      L   + E +++LQ  A++K +++    D  L     AD   MRQ
Sbjct: 284 SKIEAERLKLYPEVFDLERCLHEIMVLLQPSAKDKGVKLLVDYDLFLPTRFIADPGRMRQ 343

Query: 371 VILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NLL NAVKFT  G  +   V     +     +++++D G GI+   +  V   F Q 
Sbjct: 344 ILTNLLGNAVKFTHTGHVLARVVGFERDAEHYELHVTVEDTGIGISPDNLDHVFGEFNQV 403

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDN 485
                   +G GLGL I + ++   GG   + S+L EG        LP    +  +    
Sbjct: 404 EATSNRRFEGTGLGLAITRQLVHLMGGSVWVDSQLGEGSCFGFRVTLPRAEPVAPLDRPT 463

Query: 486 HEST 489
              T
Sbjct: 464 PPVT 467


>gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 663

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 22/291 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------EN 246
             L  S  + L+    +  L+  L  A     + ++  E+                   +
Sbjct: 371 KALLSSIAEQLAIAINQSQLMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAAS 430

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             ++ FLA++SHEL TPL  ++G S  +    +G L     +EY+  IH SG+ LL++IN
Sbjct: 431 RIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELT-PRQREYLQTIHDSGERLLDMIN 489

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWAD 364
           +ILDLS+I+AG+  L+    SL  +    +  L  ++    + +   +   P      AD
Sbjct: 490 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 549

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + Q+I NLL+NA+KFT  GG V +   W         ++D G GI E ++P V   F
Sbjct: 550 PGRIEQIIWNLLTNAIKFTPQGGNVTLRF-WVEDNTVIFQVEDTGIGIPEEKLPLVFEKF 608

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +     +G G+GL + + I+  H G+  + S +  G      +P++
Sbjct: 609 QQVDASYHRPYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIPSS 659


>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 883

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 20/298 (6%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +     ++   +     K  + +L     +  +  +         E+R +AE  N AKS 
Sbjct: 328 LWGLLAAYQLNVPRQWHKVELYLLKQAGAQLGVALQQAELLKQVRESRDKAEAANKAKSA 387

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLNAILGFS+++  +    L     K+ +  I+RSG HLL+LIN++LD+
Sbjct: 388 FLANMSHELRTPLNAILGFSQLLARDENLTL---EQKQTLNTINRSGSHLLSLINDVLDM 444

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+  L+     L+ ++     M  L+A+ K + +  +    L   +  DE  +RQ
Sbjct: 445 SKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVLNIQKSSQLPSHIRVDESRLRQ 504

Query: 371 VILNLLSNAVKFTAIGGRVHVTV--------------GWTSGRGQYISIKDNGPGIAEGE 416
           V++NLL+NA+KFT + G V + V                         ++D G GIA  E
Sbjct: 505 VLINLLTNALKFTDV-GSVTLRVFTQPLPAPFSLNQETLQPSLSLCFDVEDTGIGIANNE 563

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  +  +F Q S     + +G GLGL I    +    G   I+S+L +G  V   +P 
Sbjct: 564 LDHIFEAFIQTSSGR-RSHEGTGLGLAICHHFIHLMEGDIQIQSQLGQGTTVSVQIPV 620


>gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1079

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 7/275 (2%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E    +A  E   +   + RK+AEE N AKS FL+ MSHELRTPLNAI GFS+++   
Sbjct: 672 QGEISHFVALKEN-ITELKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSS 730

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              PL N+ ++  +  I  +G+HLL LINE+LDL+RIEAG+  LS  A+    I+ EC+ 
Sbjct: 731 RKNPL-NDKHRSMVEQIDGAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLP 789

Query: 338 MLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
           +L   A++  +       + +   V AD    +QV++NLLSNA K+   GG V + V   
Sbjct: 790 LLHSLAEQHQVTFHSCCGEQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQAN 849

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    + DNG GIAE +   +   F +         +G G+G+ I + ++   GGQ
Sbjct: 850 EPTGFLRFQVIDNGLGIAEEKQKQLFVPFARL-AQDSENIEGTGIGMTITKQLVEAMGGQ 908

Query: 456 FLIRSKLREGVEVIAILPNTR--VLNFIPEDNHES 488
               S+  +G      LP     V + +P  + E+
Sbjct: 909 IDFESRYGQGSTFWFTLPLADEVVEDEVPTLSAET 943


>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
 gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
          Length = 916

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               S  +L  + I+ +  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +  +  +    +    ++  + + ++E+     D  +KRA+E    K
Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN ++GF+ +     +    N T ++++  I RS  +LL +IN++L
Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L      L   + E + +L   A +K +E+   I  ++   V  D   +
Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q++ NL+ NA+KFT  G   V V     S     I I+  D G GI E +   +  +F 
Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           Q   +I     G GLGL I Q ++   GG     S+   G      +      N IP+
Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527


>gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21]
 gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21]
          Length = 984

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
 gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
 gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
          Length = 651

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A S     R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 386

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 174/381 (45%), Gaps = 6/381 (1%)

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK-SATLLIALSISALSNFM 158
              +   R  +++G   +G     +   +        L +        +      L   +
Sbjct: 7   EQSIQQLRHIMIIGMAFVGYSLGFMWFYDQVGAVIGSLLLLPVGLAAWLLGWRGGLLAAL 66

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           +   + +  F +  +   + +       + +A ++  A+ +   +   +     ++   +
Sbjct: 67  IGICLNIGLFLLNGSSFAEILALG--PGLMMAFVVGGAIGWLRSLIDKIQTQTTELQRER 124

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
               + I++ +  +      ++ AE  N +KS+FLA MSHELRTPLNAI+G+SE+++ + 
Sbjct: 125 ELLANEISQRKQIEQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQEDA 184

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                   Y + +  I  +G HLL LIN++LDLS+IEAGR EL       I+++ +  + 
Sbjct: 185 -EADQLPNYVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELY 243

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +Q +  + N  +   +   L  + +D + +RQ++LNLL+NA KFT   G + +      G
Sbjct: 244 IQPQIAKNNNRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQ-GTITLRAKR-DG 301

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +  + D G G++   +  +   F Q   +  +   G GLGL I++S+    GG  ++
Sbjct: 302 DWLHFEVVDTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMV 361

Query: 459 RSKLREGVEVIAILPNTRVLN 479
            S L +G     I+P  ++  
Sbjct: 362 ESVLGQGSNFQLIVPAFQLAP 382


>gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava]
          Length = 896

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T ++A+ +S  
Sbjct: 113 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLIFTGLAFTAILAVRMSRT 172

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  L              L T+      +    L  + +        +     +  + I
Sbjct: 173 INGPLSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 229

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +    +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 230 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 289

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 290 QKSELTP----RQYDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 345

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 346 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAM 405

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   +I     G GLGL I++ ++ 
Sbjct: 406 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIE 465

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 466 QMGGEIGVDSTPGEGSEFWISLNLPKAR 493


>gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 957

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHELRTPL ++LGF+E++  +T+     E  K+Y+  I++  Q L +
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK---EERQKKYLTTIYQEAQRLTS 637

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ R+EAG+    +    ++ ++++ I + +++  +   E     D    +V  
Sbjct: 638 LINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKH--EFDMISDQEHFTVMG 695

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + Q+  N++SNAVK++  GG V V V +      YI I+D G GI    +  + T 
Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDEGIGIPNKALGQLFTK 754

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +      G GLGL I + I+  HGG   ++S+ ++G     +LP 
Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLPL 805


>gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL +I G++E +  + +   N E  K ++  I      + +L
Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTHL 239

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL ++E    E     + L ++V     ++Q  A+E  +E+    +    +V  +
Sbjct: 240 INDLLDLEKMEESSVEFEMKELDLCEVVDYVYRIVQPIAEENEVELEIDCEN--VTVKGN 297

Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
           ++ + Q++LNL+ NAVK+T     G   V V  + +     I ++D GPGI +     + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGIPKEAQSRIF 357

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             F +   A      G GLGL I ++I+  HGG+  + S++ +G  +   LP  R
Sbjct: 358 EKFFRVDKARSRKMGGTGLGLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPKGR 412


>gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 769

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 14/288 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   L ++       Q E           +      ++ AE   LAK  FLA+MSHE+RT
Sbjct: 69  LAQRLEEAERARERLQQELQRHGEL----EQELLRAKQAAEAAMLAKGEFLATMSHEIRT 124

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL 
Sbjct: 125 PLNGIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELE 180

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
            +  +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+K
Sbjct: 181 ITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 240

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V + +               ++D G GIA  +   +  SF Q   +      G
Sbjct: 241 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGG 299

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 300 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 998

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 9/268 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ AEE    KS FLA+MSHE+RTP+NAI+G + ++  E + P   
Sbjct: 477 LTERKHIEEALKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTP--- 533

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ I  I  +G  LL +IN+ILD S++E  +  L E   ++   V + + ++ + A 
Sbjct: 534 -EQRDCIEVIETNGDALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAA 592

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402
            K + +   ID S+   +  D   ++QV+ NLLSNAVKFT  G  V  V+     G    
Sbjct: 593 NKGLNLAYSIDKSVPEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVI 652

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GI +  +  +   F Q   +      G GLGL I++ ++    G+    S 
Sbjct: 653 QFEVRDTGIGIPQNRMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESS 712

Query: 462 LREGVEVIAIL--PNTRVLNFIPEDNHE 487
              G      +  P  ++    P    +
Sbjct: 713 EGTGSSFHFTIRAPAVKLKFDSPAATSQ 740


>gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 13/275 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H+ ++ +  +  +   +  +   +  K  +   +  AE+ + AKS+FLA+MSHE+RTP+
Sbjct: 234 NHMRETLLDDIEQRHAIELALLSEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPM 293

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G  +++    +    +E  K YI  IHRSG+ LL++IN+ILD S+IEAG+ +L E 
Sbjct: 294 NGVIGMLDMLRDTPL----DENQKHYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEM 349

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L D+V  CI +    A ++NIE+F  ++P +   +  D   +RQ+I+NLL NA KFT
Sbjct: 350 VFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFT 409

Query: 384 AIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
              G V + VG  +   Q          ++D+G GI       +  SF Q   +      
Sbjct: 410 EE-GFVSLEVGLDNTALQAEGRLMLRFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYG 468

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I +S+    GG+  ++S   EG +    
Sbjct: 469 GTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFT 503


>gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
 gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
          Length = 1006

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/390 (24%), Positives = 167/390 (42%), Gaps = 7/390 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           +   +    A  + + +L +            + +  +  +A+++ + +       +   
Sbjct: 183 KHLAICPMAAEDITYAVLEIGFLSEVDGRTRLLLERVSESVAIAVRSANYRAHLQTLLEE 242

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q+       +       A     +        L ++N ++     + +  
Sbjct: 243 TQRQSEELQAQSEELRVANEELEEQGNALKETATRLELQQAELEQTNTQLEEQTQQLEAQ 302

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             +L   K          E  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ 
Sbjct: 303 RDDLARTKLSLQHQAADLERASRYKSDFLANMSHELRTPLNSSLILAKLLADNPQGNLSE 362

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   I  +G  LLNLI++ILDLS+IEAG+ EL    + +  ++ E    +Q  A+
Sbjct: 363 EQVK-FAKTIQSAGNDLLNLISDILDLSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLAR 421

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +    +I P    +   D + + QV+ NLLSNA+KFT   G V ++V   S +   +
Sbjct: 422 QKELRFETQIAPDCPKIIFTDRQRLEQVLKNLLSNAIKFTEQ-GEVKLSVTPLSNQRLAL 480

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI+E +   V  +F Q   +      G GLGL I++      GG+  + SK  
Sbjct: 481 AVSDTGIGISEEQQQIVFEAFRQADSSSHRKHGGTGLGLSISKEFSRLLGGELRLESKPG 540

Query: 464 EGVEVIAILPNTRVLNFIPE--DNHESTQY 491
           +G     I+P        P    + ES + 
Sbjct: 541 DGSTFTLIIPADFDPTASPPTIASEESKEI 570


>gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2272

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +   N  ++  Q     L  E E  AK    E +      E+  
Sbjct: 1771 IGISLSNALLFREIRKVSAKNASMIESQKRALALAREAEQKAKIAEAEAKHNVKLKEDAA 1830

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    ++   EY+  I      LL LIN
Sbjct: 1831 RAKSIFLANISHDLRTPMNGVIGLSELLKGTYL----DKEQDEYVESIRVCADTLLTLIN 1886

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L   + E I  L+   +++ +E  + +D       V  D
Sbjct: 1887 DILDFSKLEAGKMKISTVPLNLKQTISEVIRALRYTHRDRGLETIENLDKVPPELVVLGD 1946

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +  S+ D G GI + +   + 
Sbjct: 1947 PVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGRVRLECSVSDTGIGIPDEQKARLF 2006

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
              F Q   + + +  G GLGL I ++I+    GG   + SK   G  V   L
Sbjct: 2007 RPFSQADASTERSYGGSGLGLSICKAIIEDVLGGAIWLESKPGVGTTVTFHL 2058


>gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1816

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/400 (24%), Positives = 166/400 (41%), Gaps = 26/400 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            R  +++  +  G    ++ L     +   +L      T  I + ++ ++  M    +   
Sbjct: 1098 RSVVVLPILFEGEVKAVIELASFHRFGEIHLAFLDQLTESIGIVLNTIAASMRTEELLKQ 1157

Query: 167  FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L  Q   +   +      A  L  +          L ++N ++       +  
Sbjct: 1158 SQSLAEELRAQQAELTDSNRRLEQQANSLQASEDRLRNQQEELQRTNEELEERSRLLEVQ 1217

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ +   EE        +  KS FLA+MSHELRTPLN++L  S+++   
Sbjct: 1218 NVEVERKNREIEQAKAALEERAQQLAVASKYKSEFLANMSHELRTPLNSMLVLSKLLSDN 1277

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              G L+     ++   IH +G  LL LIN+ILDLS+IE+G  ++  S   L  +      
Sbjct: 1278 ADGNLS-PKQVDFAQTIHSAGADLLALINDILDLSKIESGAMQVDVSECLLAGLQDYIER 1336

Query: 338  MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  A +K +    ++D     ++W DE+ ++Q++ NLLSNA KFT   G V V +   
Sbjct: 1337 AFRQLASQKGLRFAVEVDRRTPGAIWTDERRLQQIVRNLLSNAFKFT-EHGEVVVRIAPA 1395

Query: 397  SGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G                 +S++D G GIA  +   +  +F Q          G GLGL 
Sbjct: 1396 RGGWSRDAEGLNAAGSVLALSVRDTGIGIAPEKQRIIFEAFQQADGTTSRKYGGTGLGLS 1455

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLNFIP 482
            I++ +    GG+  + S   +G      LP  R  +   P
Sbjct: 1456 ISRELAKLLGGELAVESSPGKGSTFTLYLPEARLAVPAAP 1495


>gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 943

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 17/279 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--------TRKRAEEENLAKSRFLAS 255
           T  L ++   ++    E+DD +A+   +   + E         ++ AE  N AKS FLA+
Sbjct: 226 TAQLARAFTDMMDKIKERDDKLADHRASLERTVEERTHDYRMAKEDAEAANAAKSDFLAT 285

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N +L  +E++    +       ++ Y   I RSG+ LL +IN+ILDLS+IE
Sbjct: 286 MSHEIRTPMNGLLVMAEMLSAANLSM----RHRRYAEIISRSGKSLLTIINDILDLSKIE 341

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           +G+ +L  +      +V +   +   +A+  N+EI   I P+    +  D   + QV+ N
Sbjct: 342 SGKLDLETAPFEPDAMVEDIACLFWEKARSNNVEIATYISPNTPQSILGDVTRLNQVVTN 401

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L++NA+KFT  GG  + V         +    I + D G GI    +  +  +F Q   +
Sbjct: 402 LVNNALKFTEKGGVEIRVDGRLNKNGQRVRLRIDVIDTGIGIPADRLDQIFEAFSQADQS 461

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
                 G GLGL + + +M   GG   + S   +G    
Sbjct: 462 TTRKFGGTGLGLAVCKRLMHAMGGDVKVASAEGKGSCFT 500


>gi|295108000|emb|CBL21953.1| amino acid-binding domain sensor hybrid histidine kinase
           [Ruminococcus obeum A2-162]
          Length = 951

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 148/298 (49%), Gaps = 7/298 (2%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +         F   I   +F    K    +A       + +      +   K+AE+ +L+
Sbjct: 512 MFAFFVAIGFFSLSIISIIFALLRKARKAEAVAKLAANDTQKLNDKLEIALKKAEDASLS 571

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+RFL +MSH++RTP+NAILG+++++E E  G    ET  E++  + +SG  LL++IN +
Sbjct: 572 KTRFLNNMSHDIRTPMNAILGYAQLMEDELKGKGLPET-SEHLEKLQQSGTLLLSIINNV 630

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD++RIE+ R EL E+   + D+ +    +   +A +KNI +   ++     V  D   +
Sbjct: 631 LDMARIESERMELDENYCRIEDVWKSLFAVFDEKAMKKNIVLHYAMNVEHEHVLTDVTKV 690

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTS 423
           +++ +N+LSNA+K+T  GG V V +   S          IS+ D G G+++     +  +
Sbjct: 691 KEIFVNILSNAIKYTPAGGSVMVDIDELSCDESGYMIVRISVSDTGIGMSQDYQTKIFEA 750

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F +     KS   G GLG+ I +  +   GG   + S+L +G      L   R+ +  
Sbjct: 751 FTREQNTTKSKIAGTGLGMSIVKKYVELLGGIINVESELGKGSTFTVTL-KHRIADES 807


>gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 950

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 21/288 (7%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEV-----------AKSLSDETRKRAEEENLA 248
              ++    +   ++   Q   + L  +LE            ++    E +  AE    A
Sbjct: 398 LPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTQELENSQESLLEAKLVAEGATKA 457

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+NAI+G SE++    +        + Y+  +  +G+ LL +IN I
Sbjct: 458 KSEFLANMSHEIRTPMNAIIGMSELVLQTDLTS----QQRNYLQKVQYAGELLLGIINNI 513

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S++EAG+ EL +   S+ +++     +L ++A+ K + +   +DP +  +   D   
Sbjct: 514 LDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLR 573

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           + Q+++NL +NAVKFT   G + +                S+ D G G+   +   +   
Sbjct: 574 LSQILINLGNNAVKFTNQ-GEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQW 632

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           F QG  +      G GLGL I++S+    GG   + S + +G      
Sbjct: 633 FNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFT 680


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 136/256 (53%), Gaps = 5/256 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I      +   +E ++ AE  + AK  FLA+MSHE+RTP+ AILGFS+++  +     
Sbjct: 245 RDITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSDLLIHDQRLQN 304

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
               + E    ++R+G+HLL+LIN++LDLS+IEAGR  +     S ++IVR+   ++ L+
Sbjct: 305 EFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIVRDVCQLMSLK 364

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A EK++ +       +  +   D   ++QV++NL+ NAVKFT   G V +TV   S    
Sbjct: 365 ASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPR-GSVQITVDIHSSGHA 423

Query: 402 Y---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + + D G G+   +I  +   F Q   +      G GLGL I++ I+   GGQ  +
Sbjct: 424 TMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVISKRIVEALGGQVSV 483

Query: 459 RSKLREGVEVIAILPN 474
            S+  EG     +LP 
Sbjct: 484 VSQSGEGSTFRVLLPL 499


>gi|163813929|ref|ZP_02205323.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
 gi|158450799|gb|EDP27794.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
          Length = 779

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 169/410 (41%), Gaps = 23/410 (5%)

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           + +    A L +   + N+   +           +  + +        +          +
Sbjct: 63  VAILTALAVLGICIYLANAKKMV-------RQSAIVIVFVITLMAFPMMFFTSGGAYSGM 115

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             +    ++ +     L + M  Y +      +V+A    +     ++            
Sbjct: 116 GFWFGLGMIFSF---LLIDGMFCYVMLAVQIIMVLACYIVSYKYPELVIPLANERSVYVD 172

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              + I + +   ++        K  L  E+E         +  A+  N AKS FLA MS
Sbjct: 173 MLQSLIIFGIVIGSIVRFQNDVYKCKL-EEIEQINEELTRAKDDADVANHAKSEFLAHMS 231

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLN I+G +E+I  ET      E   +   DI  S   L++L+ ++LD S+IE+G
Sbjct: 232 HEIRTPLNTIVGMNEIIMRETH----EEQTMKCARDIQSSSDVLVDLVRDVLDFSKIESG 287

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           R E+         ++   + +++ RA++KN+E+  ++  +L   +  D   + ++++NL+
Sbjct: 288 RMEIVNEEYHFSQLLSNVLSVMESRARQKNLELDAEVQETLYNDLKGDSARICRILINLI 347

Query: 377 SNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            NAVK+T   G + VTV   +           ++++D G GI E +   +   F +  ++
Sbjct: 348 GNAVKYTKK-GSIRVTVHMENHGADPHNVELVMAVRDTGIGIKEEDQERLFKDFERLDLS 406

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              + +G GLGL I   ++   GG     SK   G   +  +   R+ + 
Sbjct: 407 NNRSIEGTGLGLAITYHLVEMMGGSITCHSKYGYGTTFVVKISQERLSDE 456


>gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1117

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 14/316 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                 ++V L     +   ++ +                T    +      S     D 
Sbjct: 294 AAILVGLLVMLYVNRQVVGRLVRLQETMGSHARGVAMPIPTEGKDEIADMARSLGYFVDA 353

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +       +    + R  A++ N AKS FLA+MSHE+RTP+NAI+G S +     +    
Sbjct: 354 I----RQREDALSQARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRTGL---- 405

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +   ++Y+  I  + Q LL +IN+ILD S+IEAGR E  +   S+ D++ +   ++  RA
Sbjct: 406 DPRQRDYLIKIQNASQTLLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLITRRA 465

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ 401
           +EK +EI       L   V  D   + QVI NL +NA+KFT +G  V  V +   S    
Sbjct: 466 EEKGLEIVFATTGDLPQKVIGDPLRLAQVITNLCTNAIKFTHVGEVVVRVELQSISDGKA 525

Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G G+ E +   +   F Q   +      G GLGL I + ++    G+  + 
Sbjct: 526 CLLFSVRDTGIGLTEQQAARLFEPFSQADASTTRQFGGTGLGLSICRRMVELMEGRIWVD 585

Query: 460 SKLREGVEVIAI--LP 473
           S+  +G        LP
Sbjct: 586 SEHGKGSTFSFTASLP 601


>gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 1302

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 148/266 (55%), Gaps = 14/266 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                  +K A+  + AKS FLA+MSHE+RTPLN ++GFS+++    +    NE   +Y+
Sbjct: 656 NKELKNAKKMADIASQAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----NEIQTQYL 711

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ SG++LL++IN+ILD S+IE+G+ ELS    ++ DIV + I ++  ++Q+KNIE+ 
Sbjct: 712 NYINESGENLLSIINDILDFSKIESGKMELSIEKANVYDIVSQVINVILYQSQKKNIELL 771

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIK 406
             I+P L   +W DE  ++Q+++NLL NAVKFT   G + + V      +       S++
Sbjct: 772 LNIEPGLPETIWLDESRLKQILINLLGNAVKFTQE-GEIELKVEKLSIESKNITLRFSVR 830

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI + +   +  +F Q + +I     G GLGL I+ +I+   G    + S+L +G 
Sbjct: 831 DTGIGIPKEKQKHIFNAFTQENSSISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGS 890

Query: 467 EVIAILPNTRVLNFIPEDNHESTQYK 492
                +     + +   + HE    K
Sbjct: 891 TFYFDI----QVPYEMSERHEEEDLK 912


>gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571]
 gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571]
          Length = 763

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 108/285 (37%), Positives = 160/285 (56%), Gaps = 9/285 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSD------ETRKRAEEENLAKSRF 252
                  L  +  ++++  A+       LE  A+ L++      E + RAE+ N AKS F
Sbjct: 475 LKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEEKTRAEDANRAKSEF 534

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAI+GFSE++E    GPL ++ Y+EY  DI  SG +LL++IN+ILD+S
Sbjct: 535 LANMSHELRTPLNAIIGFSEIMESGMFGPLGSDKYREYCSDIKGSGTYLLDVINDILDMS 594

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IEAGR +L    I L +I+ + + +  ++  EK +++  ++      +  D + ++Q++
Sbjct: 595 KIEAGRMQLELEDIRLDEIIADAMRVTAVKGDEKQLDMTAQVGAGQV-MRGDRRALKQIL 653

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNLLSNAVKFT  GG V V     +G    I+I+D G GI    +  +   F Q      
Sbjct: 654 LNLLSNAVKFTPEGGHVAVRAK-VNGGAAVIAIEDTGIGIPRHALNKIGRPFEQVESQFT 712

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              +G GLGL IA+S+   HGG   IRS    G  V+  LP   V
Sbjct: 713 KTHKGSGLGLAIAKSLAELHGGSMRIRSTEGAGTTVVVRLPIHGV 757


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    ++  K Y+  I R+
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +A  K IE+   + P+
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
            +   +  D   + QV++NL++NA+KFT   G V +++     +        S++D+G G+
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             E +   +  SF Q   +      G GLGL I + ++   GG+  + S+   G      
Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265


>gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 631

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A  +    +FF      +  S+V +L   A     I  L    S   E  ++AE+ N  K
Sbjct: 353 AVYIDKPQTFFQQHYVKIIASSVFLLLLIAAIVYYIRILRKTYSRLSEAVEKAEQANQLK 412

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNAI+GFS ++        +    +EY   I  +   LL LIN+IL
Sbjct: 413 SAFLANMSHEIRTPLNAIVGFSNML----PHTEDPVEMREYADIIETNTDLLLQLINDIL 468

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IEAG ++   S+I +   + E    ++LR +  ++ +           + D+  + 
Sbjct: 469 DLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPGCLFYIDKNRLI 528

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ N ++NA+KFT   G + +    T     Y  + D G G++  +   V   F +   
Sbjct: 529 QLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYVSDTGCGMSNEQCEHVFERFVK--- 584

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                 QG GLGL I ++I+   GG+  + S+  +G      LP  +
Sbjct: 585 -YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630


>gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
          Length = 560

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 169/429 (39%), Gaps = 31/429 (7%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R      +   +V  +  ++       +W +         + L +              
Sbjct: 6   RRSRAARLIATAMVGGLLFFYLGWTALIVWLVANTICELWVVYLERAYRPH-----WGQG 60

Query: 106 WRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
              ++ +G   A  + W+ ++                     I +     +   L   + 
Sbjct: 61  VIRFMRIGPPSAFAMVWSFMSAYCVLNGPMAMRYAALLILFGIVVEGVRYAMNSLAAMLS 120

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L+ +P ++  +   +     L   LA      L    Y+   +        + +  +   
Sbjct: 121 LTVWPFLMLAALPLLAKRFDLLDRLAAFAIL-LGLIGYVADAVRTMRASAKAREEAEAQA 179

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +                    + AKS FLA MSHELRTP+N +LG +  +     G   +
Sbjct: 180 LEA------------------SRAKSAFLAMMSHELRTPMNGVLGLAHALR----GTKLD 217

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+  I +SG  L+ ++N+ILDLS+IEAG+  L  +   L  +  +   +    A+
Sbjct: 218 AQQSEYLEMIEQSGHGLMTILNDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESAR 277

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +++  ++ PS    V  D   +RQ+++NL+SNA+KFT   GRV + +G  +G    +
Sbjct: 278 LKGLDLILEVSPSAPPWVSGDATRVRQILMNLVSNALKFT-ESGRVVIRLGGEAGGVVTL 336

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G G+   +I  + T F QG  +I     G GLGL I + +     G+ ++ S+  
Sbjct: 337 SVTDTGVGMTAEQIGRLFTPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPG 396

Query: 464 EGVEVIAIL 472
            G      L
Sbjct: 397 VGSTFTVRL 405


>gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
 gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
          Length = 1482

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 142/281 (50%), Gaps = 18/281 (6%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +AE     +  E +++L+      A+E +  KS FLA+MSHE+RTP+  ++G SE++ 
Sbjct: 899  RRRAELKLEESMHERSRALA--AETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLC 956

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +    ++  +++  +I RS   LL +IN+ILD  ++E G+ +L ++A +L  ++ + 
Sbjct: 957  DTQL----SQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDT 1012

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
              ML    Q+K +E   +   + +  +  D   +RQV+ NLL+NA+KFTA+ G + + V 
Sbjct: 1013 QKMLTFATQKKGLEFRNECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFTAV-GSITLRVI 1071

Query: 395  WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             T         +  ++D G GI++  +  +   F Q   +      G GLGL I ++++ 
Sbjct: 1072 ETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKNLVD 1131

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRVL------NFIPEDN 485
              GG   + S   +G      +P  +V       +  P++ 
Sbjct: 1132 LMGGTIGLESVENKGSNAWFSIPFEKVQTLESSGDSSPDEE 1172


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 14/280 (5%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +      +  +   +         R  AEE   AK+ FLA+MSHE+RTP+N ++G +E++
Sbjct: 331 VEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAELL 390

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +        ++Y+  I  S   LL +IN+IL+LSR++A + EL       +  VR+
Sbjct: 391 SETKLSI----EQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSCVRD 446

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            + +L+ +AQ K + +  +    +   V+ D+  +RQV++NLL NA+KFT  GG V + +
Sbjct: 447 TMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGG-VTLRL 505

Query: 394 GWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              +        + ++D G GIA  +I  V   F Q          G GLGL I++ ++A
Sbjct: 506 RSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISRELVA 565

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             GG+  + S L +G      LP        P+D+   + 
Sbjct: 566 LMGGRITVDSTLGQGSCFTLCLPL-----GSPDDDAGQSD 600


>gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 718

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 9/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +     +    +          I +L+  +    ET+ +AE  N AKS FLA+MSH
Sbjct: 216 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 275

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNA+LG++++++           + EY+  I+RSG+HLL+LIN++LD+S+I+AG 
Sbjct: 276 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGH 332

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +     +  ++  E   ++Q++A +K + +  +++ S+   V  D    RQV++NLL 
Sbjct: 333 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 392

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     +               + D+G GI+E     V   F Q    I   
Sbjct: 393 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQN 452

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I++  +   GGQ +++S+L  G      L
Sbjct: 453 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488


>gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 917

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 106/461 (22%), Positives = 175/461 (37%), Gaps = 31/461 (6%)

Query: 27  YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
            P++++          +             L  A                L+  +   A 
Sbjct: 65  APAQLERIAAQTLEQADVRAVAFLAPDRTRLAHAGPSMLNLPPSGGTGTQLLQRSGNDAT 124

Query: 87  LSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L                               L W  + L   GT    Y  ++ S  
Sbjct: 125 RYLMPVFGHHRDLATDAVPAEAERL---------LGWVEIELSHDGTLLRGYRNLFTSLL 175

Query: 145 LLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
           L+ A L +S L    +   +      +  A     +   H+ +   A            I
Sbjct: 176 LIFACLVLSGLLALRMSRTINDPIERIKHA--VNQLKDGHLEERLPAMGSHELDELARGI 233

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEV-------AKSLSDETRKRAEEENLAKSRFLASM 256
                         Q   D    ++              D  RK A E +  KS FLA+M
Sbjct: 234 NRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANM 293

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLN ILGF+ +++   M P       +Y+  I +S  +LL +INEILD S+IEA
Sbjct: 294 SHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLSTIEKSADNLLGIINEILDFSKIEA 349

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNL 375
           G+  L     +L D++++ + +L   A  K +E+       + SS+  D   ++Q++ NL
Sbjct: 350 GKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPSSLIGDPLRLKQILTNL 409

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +SNA+KFT   G + V               IS++D G G++  ++ T+  +F Q   ++
Sbjct: 410 VSNAIKFTRE-GTIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSL 468

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGL I++ ++   GG+  + S   EG +    L
Sbjct: 469 ARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 881

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 19/294 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           + L      +     +  DL  ++   K+ S++     EE N AKS FLA + HE+RTPL
Sbjct: 198 HQLEILIATLGQYFQDLQDLQTKMAQQKA-SEQA---LEELNRAKSEFLAMIGHEIRTPL 253

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA+ G + ++    +    N+  KE++  I  SG++LL +IN ILD S+IEA + EL E 
Sbjct: 254 NAVTGMTGLLLDTQL----NDQQKEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEQ 309

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              L   + E + +   +A +KN+E+   I+ +   ++  D   ++Q++ NL+ NAVKFT
Sbjct: 310 PFELGPCIEEVLRLFVSQASKKNLELAYLIESNTPSAIIGDSTRLKQILANLIGNAVKFT 369

Query: 384 AIGGRVH------VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
             G  V       +     S +        ++KD G GI       +   F Q   +   
Sbjct: 370 KKGEVVIYVNATPIKSRQDSKQNSRYELRFAVKDTGIGIPSDRCNRLFQPFSQVDASTTR 429

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              G GLGL I++ +    GG   + S   +G      +      +  P  + E
Sbjct: 430 KYGGTGLGLAISKGLSELMGGNMWVHSTEGKGSTFNFTIQTLAAPSSSPATSQE 483


>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
          Length = 918

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 179/440 (40%), Gaps = 20/440 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
               L  A+     +        + S     +   +  +  +     +     +      
Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L G +   +    L   EP      +  +     +L++LS+      +    +    +  
Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A     +  +     SL   L               +     +      + L  E   
Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          Y
Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG  L+++IN+ILD +RIE+G+  L      L +++ + + +   +A EK + +
Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405
              +D  +   +  D   +RQV++NLLSNA+KFTA  G V V V      G  + +  S+
Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +G
Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624

Query: 466 VEVIAILPNTRVLNFIPEDN 485
            +    LP +  L+    D 
Sbjct: 625 TQFSVDLPLSPALDAGEADE 644


>gi|302503015|ref|XP_003013468.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291177032|gb|EFE32828.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 1345

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 723 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 782

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 783 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 839

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 840 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 898

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 899 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 958

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 959 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 992


>gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
 gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
          Length = 908

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL+ + I+ L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    M      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L     SL + + E I++L   A EK +E+   +   +   V  D 
Sbjct: 346 DVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422
             ++Q+I NLL NA+KFT  G   + V +     R   + ++  D G GI+E +   +  
Sbjct: 406 LRLQQIITNLLGNAIKFTETGNIDIRVELRGLQERQVELEVQIHDTGIGISERQQSQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+L  G      +
Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515


>gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
 gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
          Length = 1020

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 401 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 521 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 577 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 637 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 893

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 134/254 (52%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +     T +RAE  + AKS FLA +SHE+RTPLNAI+G  EV+  + +     
Sbjct: 354 ISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTT--- 410

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y     ++   LL+LIN++LDLS+IEAG ++L  +   L+ ++   + +  + A 
Sbjct: 411 -EQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTITAN 469

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRG 400
           ++ + I   +  +L ++   D + +RQV+ NLL NA+KFT   G + V            
Sbjct: 470 QQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQ-GLIRVETERLETPVASW 528

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS+KD G GIA+ +   +  +F Q   +I     G GLGL I++ ++   GG+  + S
Sbjct: 529 IRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGVDS 588

Query: 461 KLREGVEVIAILPN 474
           +L +G      LP 
Sbjct: 589 QLGKGSHFFFTLPV 602


>gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida
           KT2440]
          Length = 917

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 21/286 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251
           + + + +    + +   E    I +           +E+     D  RK A E +  KS 
Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+  I +S  +LL +INEILD 
Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       + +S+  D   ++Q
Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++ NL+SNA+KFT   G + V               IS++D G G++  ++ T+  +F Q
Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++     G GLGL I++ ++   GG+  + S   EG +    L
Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
 gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
          Length = 1567

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 137/252 (54%), Gaps = 11/252 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   +  ++   E + +AE  + +KS FLA+MSHE+RTPLN ++GF++++    +    N
Sbjct: 916  ITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTEL----N 971

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             + K+Y+  ++ S   LL+LIN+ILD S+IEAG+ ELS   I++I++  + I +++ +A 
Sbjct: 972  TSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKHKAH 1031

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            EK +E+   I   +   ++ D   +RQ++ NLL NAVKFT   G + + +   +   ++ 
Sbjct: 1032 EKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNK-GEIELRIEAGNKNTEHQ 1090

Query: 403  ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  ++D G GIA   +  +  +F Q   +      G GLGL I+  ++     +  +
Sbjct: 1091 REYTFIVRDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDV 1150

Query: 459  RSKLREGVEVIA 470
            +S+   G     
Sbjct: 1151 QSEPGIGSSFSF 1162


>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 835

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 14/341 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           + L      + V        + L    +    +  +++    A  ++     T     ++
Sbjct: 179 TRLRLGRAAFIVLALLSVAFLTLVAVLVAQRLISRVAVLSQGARYIASGALDTRVELDAS 238

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++       + + A +  ++   ++  + A     AKS FLA+MSHE+RTPL+ ++G S
Sbjct: 239 DELDELADSFNAMAAAVAESRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMS 298

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++    +        +E+   ++ S + LL+LIN+ILD S+ E+G  EL E    L  +
Sbjct: 299 ELLLGGRLSG----EQREFAETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQAL 354

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390
             + + +L  RA++K I++  + D +L   +  D   +RQ++LNL+ NAVKFT   G V 
Sbjct: 355 TEDVVQILGSRARKKRIDLIARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTER-GHVL 413

Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + V            +  ++D G GI E  +P +   F Q +        G GLGL I++
Sbjct: 414 LAVHHNGDSDDKIRLHFEVEDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISR 473

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            ++    GQ  + S L +G     +LP    L   PE + E
Sbjct: 474 QLVERMSGQISVSSVLGKGSTFRFLLP----LQVDPEPSTE 510


>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
           HTCC2601]
 gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
           HTCC2601]
          Length = 855

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 133/273 (48%), Gaps = 14/273 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E ++RAEE + AKS FLA+MSHE+RTP+N ++G +E++    +    +
Sbjct: 309 ITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLRESAL----S 364

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    Y+  I  SG+ LL +IN+ILD S+IEA R +L      L   V E ++MLQ  A+
Sbjct: 365 DEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLMLQPTAR 424

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EK +E+    D  L      D   +RQ+  NL+ NAVKFT  G   + +T          
Sbjct: 425 EKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCVEEGEAA 484

Query: 403 I--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +  +++D G GI   +I  +   F Q         +G GLGL I + +    GG+  + S
Sbjct: 485 VHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAITKRLTDLMGGEIWVES 544

Query: 461 KLREGVEV--IAILPNTRVLN----FIPEDNHE 487
           +   G       +LP           +P+   E
Sbjct: 545 EAGRGSCFGLRMVLPVDEPAQIETAALPDSLRE 577


>gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
 gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
          Length = 701

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +       E +K+AE  N AKS+F+A MSHE+RTPLNA+LG  E + L  +     
Sbjct: 306 ITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLNN--- 362

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  + +S   LL +IN+ILDLSRIE+G + L  S I++++ +R     L  +A 
Sbjct: 363 -KQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQAT 421

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + N++   +ID ++   ++ D+  + QV+ NL+ NAVKFT+I G V V V         I
Sbjct: 422 KNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSI-GSVRV-VARKVDDNIEI 479

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA+     +   F Q   +I     G GLGL I+Q ++    G   + S+L 
Sbjct: 480 AVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLESELG 539

Query: 464 EGVEVIAILP 473
            G      +P
Sbjct: 540 TGSCFKISIP 549


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 165/389 (42%), Gaps = 25/389 (6%)

Query: 108  IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              +++  +  G    ++ L     ++  +LT +   +  IA+ ++ ++  M    +    
Sbjct: 1104 NVVVLPVLFEGQVTAVIELASFQRFSEIHLTFFDQLSESIAIVLNTIAASMRTEELLKQS 1163

Query: 168  FPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI- 225
              +   L TQ          +        A            +   + L  +A    L  
Sbjct: 1164 QSLAEELQTQQGELRETNQRLEQQAQSLKASEELLKKQQEQLQQTNEALEEKARLLSLQN 1223

Query: 226  AELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E+E   +  ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++    
Sbjct: 1224 EEVERKNAEIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNI 1283

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               L      EY   I+ SG  LL LIN+ILDL++IE+G   +    + L D+  +    
Sbjct: 1284 ENNLT-PKQVEYAATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQIERS 1342

Query: 339  LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +  A +K +E     DP L S ++ D K ++QV+ NLLSNA KFTA  G+V +++    
Sbjct: 1343 FRQIAHDKGLEFSIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAK-GQVSLSLEPAI 1401

Query: 398  GRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                               ++ D G GIA  +   +  +F Q          G GLGL I
Sbjct: 1402 RGWSLDNEILNSAELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLGLSI 1461

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            ++ I    GG+  + S+L  G      LP
Sbjct: 1462 SREIARLLGGEITVISRLGYGSTFTLYLP 1490


>gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 718

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 9/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +     +    +          I +L+  +    ET+ +AE  N AKS FLA+MSH
Sbjct: 216 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 275

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNA+LG++++++           + EY+  I+RSG+HLL+LIN++LD+S+I+AG 
Sbjct: 276 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGH 332

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +     +  ++  E   ++Q++A +K + +  +++ S+   V  D    RQV++NLL 
Sbjct: 333 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 392

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     +               + D+G GI+E     V   F Q    I   
Sbjct: 393 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQN 452

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I++  +   GGQ +++S+L  G      L
Sbjct: 453 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488


>gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 779

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 145/303 (47%), Gaps = 26/303 (8%)

Query: 204 TYHLFKSNVKILSCQAEKDD-------LIAELEVAKSLSDE---TRKRAEE--------E 245
                 S    L   AE          L A+++   +  ++    R +A           
Sbjct: 338 PRRWQDSEKNFLQAIAEHLAVAIYQAKLYAQVQQQNNTLEQRVIERTQALRDALQAAQAA 397

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDIHRSGQH 300
           NLAKS FLA+MSHELRTPL  ++G +  +     G  ++     E  + Y+  I  +GQH
Sbjct: 398 NLAKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSSQRLPVEKQQRYLKTIQENGQH 457

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSL 358
           LL LIN+ILDLS++EAG+  L+ S  SL  +  + +  L  +A ++ + +       P  
Sbjct: 458 LLELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSLNEQAYQQQVTLQLDWRVPPER 517

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
               AD++ ++Q++ NLLSN +KFT  GG+V + V W         ++D G GIA+ ++P
Sbjct: 518 DCFSADQRRVKQILFNLLSNGIKFTPEGGKVILRV-WPENHLVVFQVEDTGIGIAQDQLP 576

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q     +   +G GLGL + + ++  H G+  + S + EG      LPN  + 
Sbjct: 577 LLFQKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKIEVESVVAEGSCFTVWLPNQPIA 636

Query: 479 NFI 481
              
Sbjct: 637 PAT 639


>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 589

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 8/268 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L +     L  +     +  EL+         +  A+  N AKS FLASMSHE+RTP+N
Sbjct: 29  ALQREQAARLRAERALQRVSKELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMN 88

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G ++++   T+ P      ++Y+    R+G  LL+LIN+ILDLS++E+GR +L    
Sbjct: 89  AIIGMADLLWETTLTP----EQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSID 144

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
             L +++ +   ML LRA EK +E+   +   +   +  D   + Q++LNLL NA+KFT 
Sbjct: 145 FDLSELIDKTSEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTE 204

Query: 385 IGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G     +       +      SI D G G+   +I T+  +F Q    I     G GLG
Sbjct: 205 KGSVVMSITNDPELRTPGAIRFSISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLG 264

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI 469
           L I+Q + A  GG+  + S+L EG    
Sbjct: 265 LSISQQLAALMGGRIWVESRLGEGSTFH 292


>gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 935

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 11/294 (3%)

Query: 198 SFFTYITYHLFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            F  +I  HL  +  +       Q +K  L + +        +    A   +  K  FL+
Sbjct: 518 VFLQHIAEHLAVAIEQASLYEQLQQQKVSLESCVIERTQSLRDALSAATAADRTKVEFLS 577

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPL  I+G S  +   + G L+ E  + Y+  I+RSG+HLL +IN+IL+ +++
Sbjct: 578 TMSHELRTPLTYIIGMSATLLRWSFGELS-ERQRSYLETINRSGEHLLTVINDILEFAKV 636

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVI 372
           E+GR  L+ S   L ++VR      Q  A+  ++ +       P + +  AD K + Q++
Sbjct: 637 ESGRSLLNVSNFPLSNLVRSVATRYQEDAKNHDVSLSVDCVLSPEVENFRADSKRIEQIL 696

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NL++NA+KFT  GG + + V         + ++D G GI E +   +   F Q     +
Sbjct: 697 SNLVNNAIKFTPAGGEITLRV-QKELDSILLQVEDTGIGIPESQQKFMFEKFKQLESPFQ 755

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
               G GLGL + + ++  H G   + S + +G   I  LP    +   P  + 
Sbjct: 756 RQYAGTGLGLAMTKHLVELHNGTIQVISTVGKGSTFIVSLP----IQSQPTSDS 805


>gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 1141

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 3/282 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           +          L ++N ++     + +   ++LE A +         E  +  KS FLA+
Sbjct: 422 SQLRLELQAAELEQTNTQLEEQANQLEIQRSDLERANASVQLKAAELERSSQYKSDFLAN 481

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLN+ L  ++++       L +E  K Y   I  SG  LLNLIN+ILDLS+IE
Sbjct: 482 MSHELRTPLNSSLILAKLLADNPHENLTDEQVK-YARTIQSSGNDLLNLINDILDLSKIE 540

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           AG  E+     S++ +      M +  A EK +E    +D  L      D + + Q++ N
Sbjct: 541 AGHVEIQPEEASVVRLTNGLRQMFEPVASEKQLEFIISLDEHLPKTFETDPRRLEQILKN 600

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KFT   G+V ++V          S+ D+G GIAE ++ ++  +F Q    I   
Sbjct: 601 LISNAIKFTEK-GKVELSVRPQGSDKIVFSVADSGIGIAEDQLNSIFEAFHQADSTISRR 659

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             G GLGL I++ ++    G   + SK  +G      LP  +
Sbjct: 660 FGGTGLGLSISRQLVRLLAGTIAVESKPGQGSRFSVTLPLRQ 701


>gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 573

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 156/276 (56%), Gaps = 3/276 (1%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +  ++  +   +           D I E +  +     ++  AE  + AKS FLA+MS
Sbjct: 297 LVWARLSVSVIPGSSGEPEYFLAIIDDITERKQTEMKLRASQAAAEAGSRAKSEFLATMS 356

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAI+G S++++ E +G L NE  +EYI  I+ SG+HLL LIN+ILDLS++EAG
Sbjct: 357 HELRTPLNAIMGLSQLLQQEIVGSL-NEKQQEYINCIYSSGEHLLALINDILDLSKVEAG 415

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + EL    + +ID+  + ++ ++ RA  K +++ Q+IDP  +   AD++ ++Q++LNLL+
Sbjct: 416 KEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRRIKQMLLNLLT 475

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT++ G V + V        +I I D G GI   + P +   F Q    +    +G
Sbjct: 476 NAIKFTSV-GEVSLIVKRVPEGINFI-ISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEG 533

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + +   HGG   + S +  G +    LP
Sbjct: 534 TGLGLALTRKLARLHGGDVTVTSTVGVGSQFTLFLP 569


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 8/277 (2%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           F   T  + +            +  I +   A+ +    R+ AEE N AKS FLA+MSHE
Sbjct: 722 FIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKTAREAAEEANKAKSAFLANMSHE 781

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTP+NAILG   ++    +    +    +Y      + + LL L+N+ILD S+IE+G+ 
Sbjct: 782 LRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFSKIESGKM 837

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           EL      +  ++R+  ++L    + K +E+   IDPSL   V  D   ++Q++ NL  N
Sbjct: 838 ELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897

Query: 379 AVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A+KFT +G  V  + V          +  ++D G GIA     ++ + F Q   +     
Sbjct: 898 ALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRF 957

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I+Q  +A  GG   + S+  +G      L
Sbjct: 958 GGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTL 994


>gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33]
 gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
 gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
          Length = 783

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 742

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 10/276 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +  +   ++ R  AEE    KS FLA+MSHE+RTP+N ++G ++++E   +  
Sbjct: 341 ERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTEL-- 398

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  + Y   I  S + LL+LIN++LDLS+++AG   LSE         ++ + + + 
Sbjct: 399 --DEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLFEP 456

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399
           +AQEK I++   +   +  +   D++ +RQVILNL+ NAVKFT  G   V V    T   
Sbjct: 457 QAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAVKFTDDGAVAVSVNADHTRDH 516

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+KD+G GIA  +   +   F Q   AI     G GLGL I++ +    GG   +
Sbjct: 517 VTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGDITV 576

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           RS+L +G    A L   R+     +   E+ Q   Y
Sbjct: 577 RSELGQGATFSAYL---RMNPATGDAVVENAQISDY 609



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 23/239 (9%)

Query: 30  KMDFDRE-IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
              + R  ++  +     R         +L+A +        I  +  L+ +     +  
Sbjct: 5   HRRYSRRGLMNRYANGRVRYYLFRQSTFVLLATLIGILLSPNIGLICFLVAVVGDTIDTM 64

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-------PGTWTPEYLTIYK 141
             +++     +   V        V  +        +           P      +     
Sbjct: 65  YLRRISP-VERPTPVRPLLRLSTVTALIQAASVAFVACAPGLFMDPGPADLHETHAATLF 123

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-----------ISLA 190
           S  +LI  +I+A  +        +    V  A +  +++   + +             L 
Sbjct: 124 SLGILIGAAINATVSLPHHPMAGIVRLLVFAAAALLSVVWSAIGEPEFEAFHAFQLAGLL 183

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEEN 246
            +  + + F  +IT    +S    L+   +   L       ++   ++ +    AE  N
Sbjct: 184 ILYLSVIFFVNFITNRFHRSRKNTLAVALQNKQLEQINAKLQAQQLQSERLAVVAENAN 242


>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 734

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 10/273 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +    +    E R  A + +  KS FLA+MSHE+RTP+N ILG +EV+  +         
Sbjct: 211 QRRQLEKQLVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQ----NPESG 266

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+ I  I  S  +LL+LIN ILDLS+IE+G+ EL ES      +V+E I  ++  A+ K
Sbjct: 267 IKKKIQIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSK 326

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--- 402
            +++   +     + +  D   +RQ+++NLL NA+KF++ G    +   + S + +    
Sbjct: 327 GLDLHASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQ 386

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I +KD G G+ E  +  + + F Q   +      G GLGL I + ++    G+  + SK 
Sbjct: 387 IQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKP 446

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            EG      LP    +N +PE N    + + Y+
Sbjct: 447 NEGSIFWVTLPLE-AINVMPE-NQRPRESQSYS 477


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1231

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 145/290 (50%), Gaps = 12/290 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHE 259
           L +   ++     E ++    LE+     +  +       ++ E     KS FLA+MSHE
Sbjct: 521 LRQQQEELKVSNEELEEQTRALEMRNKELELAKNDIEQKTEQLELSGKYKSEFLANMSHE 580

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S+ +       L+ E   E    I++SG  LL LINE+LDLS+IE+G+ 
Sbjct: 581 LRTPLNSLLILSKDLADNKKKNLD-EDQVESANIIYKSGHDLLVLINEVLDLSKIESGKM 639

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            ++   + L   V++ I   +L+A +K +++       L   +  D + + Q++ NL+SN
Sbjct: 640 SVNLERVVLRTFVKDLISGFKLQATKKKLDLDLIYYEDLPEKIRTDPQRLDQILKNLISN 699

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT   GR+ + V   +      S+ D+G GI E +   +  +F Q   +      G 
Sbjct: 700 ALKFTER-GRIQLEVKRQNSDKILFSVIDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGT 758

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486
           GLGL I++ +    GG+  ++SK+ +G     +LP    R    IP++  
Sbjct: 759 GLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLLPIEGKRNETSIPKEET 808


>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
          Length = 918

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 12/275 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              ++  + + + E         +K A++ N  KS FLA MSHELRTPLN ++GF+  + 
Sbjct: 257 QATSDYRETLEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLH 316

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    N+  K+Y+  I  S   L+ +I++ILD S++EAG  EL      L D V E 
Sbjct: 317 KTPL----NKNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEV 372

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           + +L   A +K +E+   I P +   +  D   ++QV++NLLSNA+KFT  G  +V ++ 
Sbjct: 373 MTLLAPSAHDKQLELSIYISPQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISH 432

Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      +S+ D G GI   +   + T+FGQ   +I     G GLGL I + I+  
Sbjct: 433 RLLDDERTSILVSVADTGVGIPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEA 492

Query: 452 HGGQFLIRSKLREGVEVI----AILPNTRVLNFIP 482
             G+  + S    G          LPN    + +P
Sbjct: 493 MSGKITLNSAPGNGTCFTFNGVFRLPNHVFASDLP 527


>gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
          Length = 783

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
 gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
          Length = 939

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 10/279 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    ++ +  +    I    ++  + + +LE+     D  +KRA+E    KS FLA+MS
Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++GF+  +    +      +  +Y+  I +S  +LLN+IN+ILD S++EAG
Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 355

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L        D + E + +    A EK +E+  K+D  + S +  D   ++Q++ NL+
Sbjct: 356 KLALENIPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIPSGLVGDPLRIQQILTNLV 415

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            N++KFT   G + ++V   S +   +     ++D G GI+E +   +  +F Q   +I 
Sbjct: 416 GNSIKFTER-GNIDISVELKSQKEDRVELQFMVRDTGIGISERQQAQLFQAFSQADASIS 474

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
               G GLGL I Q ++   GG+  + S+L +G      
Sbjct: 475 RRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGSTFWFT 513


>gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 633

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 152/325 (46%), Gaps = 7/325 (2%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            + +S   ++       ++++ +       +        + +   L +     +     K
Sbjct: 310 LILISSIALIFMAGAAYLVAISITRPINEIISNFEDISKSALKGDLNRRAEADVGVDFRK 369

Query: 222 -----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                +D++  L++  +  ++  K  +  +  K  FL+++SHELRTPL +I G+++ +  
Sbjct: 370 IPSGLNDILDSLQIYSNDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYD 429

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           E++G + N + K  +  + R+   L  L++ +L +S+ +A   E       +  I+   I
Sbjct: 430 ESLGDI-NGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTI 488

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +   +  +E ++ I +KI   L ++ ADE  +  ++ N++ NA+KFT  GG + + V + 
Sbjct: 489 MDTIMLVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGV-FD 547

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                ++++ D G GI +  IP +   F Q   +I+    G GLGL I + I+  H G+ 
Sbjct: 548 DENYLHLTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEI 607

Query: 457 LIRSKLREGVEVIAILPNTRVLNFI 481
            I S+  +G  V   LP  R    +
Sbjct: 608 WIESEPHKGTTVHIRLPKVRDGEEV 632


>gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
 gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
          Length = 690

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +       + R++AE  N AKS+FLA MSHE+RTPLNA++G  + ++   +    +
Sbjct: 306 ITGRKHRVHELQQARQQAESANAAKSQFLAMMSHEIRTPLNAVMGLLDALQQSLL----D 361

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    ++  + +S Q LL +IN++ DLSRIE+ R+ L    +++ D V      L+  + 
Sbjct: 362 DEQVAWVSQMDKSAQLLLTIINDVFDLSRIESERFSLHPELVNIRDSVTIVFNQLRETSS 421

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K I++   I  ++   ++ D     Q++LNL+ NAVKFT   GRV V +         I
Sbjct: 422 HKAIKLEMDIADNVPDNIYQDGNRFTQILLNLVGNAVKFTEE-GRVDVAMSAV-NNRLKI 479

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI       +   F Q   +I     G GLGL I + +++   G     SK  
Sbjct: 480 SVSDTGIGINAERRKDIFQPFTQADGSITRQYGGTGLGLSICKKLVSMMNGSIDFESKPG 539

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      +P    L   P+     T 
Sbjct: 540 VGTTFFIDIP----LTEPPQSEQVKTD 562


>gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum
           H04402 065]
          Length = 522

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 299 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 354

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI I    +  +  +  ++  
Sbjct: 355 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 413

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 414 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 472

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 473 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIPLS 520


>gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
 gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 167/372 (44%), Gaps = 14/372 (3%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            ++      G  + + ++ +   +         +A ++IA  I       +     L   
Sbjct: 262 RMVYANQMNGGAYYVSSIPKNILYESGKAITLFTALVVIASIIFLPILIFIVVRSLLLTP 321

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-- 226
             ++A ++  +    +  +          S F    + + +        +  K+ L    
Sbjct: 322 LEMLAEASHRVGDGDLKILLPIEREDEMGSLFQDFNHMVSQIRHYQGQLEDYKEHLEEKV 381

Query: 227 -----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                EL       ++   +AE+ +  KSRFLA+MSHE+RTPL AI+GF+E +    +  
Sbjct: 382 AARTHELAKMNHQLEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTEQM----LTK 437

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++   +++  + R+ +HLL LIN ILDLS+IEA + E+    + L  ++ +   ++ +
Sbjct: 438 EPDDKKAQHLNTVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHV 497

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-R 399
            AQ+KN+    + D  L   + +D   ++QV+LN+ +NAVKFTA  G V + +       
Sbjct: 498 LAQDKNLTFAVEYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAE-GSVTLAISAKHSLS 556

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G G++  E+  +   F Q   +      G GLGL I++++    GG   + 
Sbjct: 557 QLEFKVQDTGIGMSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVT 616

Query: 460 SKLREGVEVIAI 471
           SK  +G   +  
Sbjct: 617 SKQTQGSCFLIT 628


>gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1]
 gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1]
 gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
 gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
          Length = 783

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 720

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/287 (35%), Positives = 152/287 (52%), Gaps = 12/287 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRT 262
              +   +      EK+ LIAE  +      E +++AEE  L+   KS FLA+MSHELRT
Sbjct: 8   QSNQELEERSKLLEEKNHLIAERNL------EIQEKAEELALSTKYKSEFLANMSHELRT 61

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN+IL  S ++   T   L NE   E    I  SG  LL+LI+EILDLS+IEAG+ EL 
Sbjct: 62  PLNSILLLSRLMSENTEENL-NEDQIESAKVIQSSGTSLLSLIDEILDLSKIEAGKMELE 120

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
              + L D+ +E   +     +EK++++   + P L S++  D   + QV+ NLLSNA+K
Sbjct: 121 YQHVRLSDVTQELNSLFAPIVKEKSLDLNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIK 180

Query: 382 FTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           FT+ G   + +T   ++      ++KD G GIAE +   +  +F Q   + +    G GL
Sbjct: 181 FTSKGSITLTITEEQSNRNNIVFAVKDTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGL 240

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           GL I++ I    GG+  ++SK  EG     I+P ++    I     E
Sbjct: 241 GLSISREIARLLGGEIRLQSKENEGSIFSLIIPKSKQTTVISPATDE 287


>gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513]
 gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686]
 gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94]
 gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94]
 gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 783

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
          Length = 934

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 27/361 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LLI++ I+ L ++ L   V     P+   ++T   +    LD  + G     L
Sbjct: 171 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 224

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 225 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 284

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     + +    + T  +Y+  I RS  +LL++IN
Sbjct: 285 RIKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLSATQIDYLHTIERSANNLLSIIN 340

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EAG+  L      L + + E   +L   A +K +E+   +   +   V  D 
Sbjct: 341 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDP 400

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421
             ++QV+ NLL NA+KFT   G + + +   S   Q +     + D G GI+E +   + 
Sbjct: 401 MRLQQVLTNLLGNAIKFTEK-GNIDIRIEQRSLNTQAVELEVQVHDTGIGISERQQSQLF 459

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   +I     G GLGL I Q ++   GG     S+  +G      +      N  
Sbjct: 460 QAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAP 519

Query: 482 P 482
           P
Sbjct: 520 P 520


>gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 928

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 18/279 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++  + NV +     E   +        I EL+  +    E +++AEE +  KS FLA+
Sbjct: 659 QWNWVRMNVVLNRYDPENGLIELIGVNYDITELKETEQKLIEAKEKAEEADRLKSAFLAN 718

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLNAI+GFS ++        +    +EY   +  + + LL LI++ILDLS+IE
Sbjct: 719 MSHEIRTPLNAIVGFSSLLVET----EDQGEKREYSKMVEENNELLLQLISDILDLSKIE 774

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG ++     + +  +  +    ++LR +   +E+  +       + +D   + QV+ N 
Sbjct: 775 AGTFDFKIRDLDVNTLCGDVQRSMKLRVK-PGVELLFEPTLPSCVIVSDPNRLHQVVANF 833

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           ++NA+KFT   G + +       +   I + D G GIA      +   F +      S  
Sbjct: 834 VNNAIKFTTT-GYIRIGYDQPDAKHLRIYVSDTGIGIAPEACEKIFDRFIKL----NSFV 888

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           QG GLGL I++SI+   GG   + S+L +G     ILP 
Sbjct: 889 QGTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILPV 927


>gi|255943187|ref|XP_002562362.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587095|emb|CAP94759.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1302

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 673 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 732

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 733 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 789

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 790 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 848

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 849 TIRKSDREQCTTNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 908

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 909 SKRLVNLMGGDVWVTSEYGHGSTFHFT 935


>gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. Hall]
 gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 569

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI+I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-VPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +             ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGT-RQDKGNIVFWVEDTGVGISEEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A    E G GLGL I + I+ +  G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRVEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1333

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 5/279 (1%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +  + ++    ++  L AE     +     R  AE  N AK  FL+ +SHELR PLN++
Sbjct: 908  RRMILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEFLSILSHELRNPLNSM 967

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG++ ++    +  +      + +  I RS Q   +LI+++LD+SRI +GR  +    + 
Sbjct: 968  LGWANLLRTHQLEEVT---VNQGLEAIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVE 1024

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            LI ++   I +++L A+ KNI+I  K+DP+ + +  D   ++QVI NLLSNA+KFT   G
Sbjct: 1025 LIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKG 1084

Query: 388  RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            R+ VT+ +T  + Q I +KD G GI    +P V   F Q       + QG+GLGL I + 
Sbjct: 1085 RIDVTLEYTYFQAQ-IQVKDTGAGIKADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRH 1143

Query: 448  IMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDN 485
            ++  HGG   + S+   +G      LP        P   
Sbjct: 1144 LVELHGGTVEVESQGEGQGSTFTIKLPVQANRKENPVAT 1182


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             RK+ E     K  F++ +SHELRTPL +I G   ++    +    +E  K  +     S
Sbjct: 800  ERKQVE---KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSS-TSEQGKRLLQIATDS 855

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             + L+ LIN+ILD+ RIE+G+ ++      L D++   I ++Q  A +  + +      S
Sbjct: 856  TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNS 915

Query: 358  LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
             S  +WAD   + Q + NL SNA+KF+  G  V++       +   ++++D G GI E +
Sbjct: 916  SSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQ-VLVTVQDTGRGIPEDK 974

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            + ++   F Q   +      G GLGL I +SI+  HGG+  ++S L EG      LP   
Sbjct: 975  LESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLPILT 1034

Query: 477  VLN 479
            V +
Sbjct: 1035 VYD 1037


>gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
 gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
          Length = 895

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELMESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----ENP 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERKEYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G          
Sbjct: 604 Q-GVELKFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTQGS---VSYGYRQEAEKVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F + +       QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKLNN----FAQGTGLGLSICKTIIERLGGEISVSSEVG 715

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP   V+  +  D  E   
Sbjct: 716 TGTTFTFWLPLESVMQDVKADKEEHRD 742


>gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
 gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
          Length = 767

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 15/342 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
             L +   P  V      ++  L T+   +     ++L   L   ++          ++ 
Sbjct: 425 GVLRHAFFPLEVRGRTLGMLC-LYTREERTPPRRVLALVEDLCGPVALAMDNARLYAEAQ 483

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                 +    +  AEL          +  AE  +  KS FLA+MSHELRTPLN+I+GF+
Sbjct: 484 ALAQRLEQRVTERTAELAETNCALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFT 543

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++     GPLN+E  ++ +G +  S +HLL LIN++LD+S+IEAG   ++  A  +   
Sbjct: 544 GILLQRLAGPLNDEQSRQ-LGMVQDSARHLLALINDVLDISKIEAGELRIAHEAFDIAAS 602

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + +   +++  A+ K + +  +       +  D + + Q+ LNLL+NA+KFT   GRV V
Sbjct: 603 IDKVAAIVRPLAERKRLCLQVERMTGPLVMTGDMRRVEQIALNLLTNAIKFT-EHGRVTV 661

Query: 392 TVGWTSGRG------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T+   S                 + + D G GI   ++  +   F Q    +    +G G
Sbjct: 662 TLELESQHAADAGPERAGRPAVRLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTG 721

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           LGL I + ++A  GG+  + S+   G      LP   V    
Sbjct: 722 LGLTICKRLVALMGGEITVDSEPGRGSRFTVTLPYETVAASA 763


>gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E   + I  +  SG HLL+L+N+ILD S+IE  + EL+ ++    D++       Q 
Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYQS 499

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396
             ++K ++     + +  ++   D+  +RQ+I NL+SNAVKFT   G + +    T+   
Sbjct: 500 ICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTAK 558

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I ++D G GI +  +  +   F Q   +      G GLGL I + +     G  
Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618

Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490
            + S   +G     +LP            + +P D ++ T+
Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659


>gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
 gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
          Length = 1044

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 173/466 (37%), Gaps = 30/466 (6%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLA 81
               +        + +   LF +S  +P      V                  +  + +A
Sbjct: 343 AAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAFTLRSLVAAVGLQAGWYVAVMVA 402

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
                 +L        +   +       ++  +                   P  + +  
Sbjct: 403 ALVLVWALLVLFDRRVLIPDDAR--TRRVVESENLNRTI---------VEAAPSGIALLS 451

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALS 198
            A   + L    +  +    A   S    ++A    S  A      L ++L       + 
Sbjct: 452 LADGAVLLQNDTMRAYDARIAAAPSLAARLLARFDASPGASAWQSDLHVTLPTGGDETVD 511

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +    ++    +L   ++    I   +  +   DE  + A+  N AKS FLA+MSH
Sbjct: 512 LLVNLVRTRYRDADVVLCNFSD----ITSQKNIERKLDEALRAADAANDAKSAFLATMSH 567

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAILG  E+I  E +     +T +E +  +  +   LLNLI++ILDLS+IEAG+
Sbjct: 568 EIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASSVLLNLISDILDLSKIEAGQ 623

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +      L + + +   M +  A  K ++    +D +L+     D   +RQ+  NL+ 
Sbjct: 624 MTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVG 683

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     V++           I + D G G+ + +   +   F Q   +I   
Sbjct: 684 NAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRR 743

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             G GLGL + + +     G   ++S   EG   +  LP     + 
Sbjct: 744 YGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPLRAATDA 789


>gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 164/373 (43%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169
           L W  L L     +  G  +     +  +A L    L+AL +    N  L          
Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L T+  +        LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 HDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            E      LP TR
Sbjct: 502 SEFWISLRLPKTR 514


>gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 169/429 (39%), Gaps = 31/429 (7%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R      +   +V  +  ++       +W +         + L +              
Sbjct: 20  RRSRAARLIATAMVGGLLFFYLGWTALIVWLVANTICELWVVYLERAYRPH-----WGQG 74

Query: 106 WRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
              ++ +G   A  + W+ ++                     I +     +   L   + 
Sbjct: 75  VIRFMRIGPPSAFAMVWSFMSAYCVLNGPMAMRYAALLILFGIVVEGVRYAMNSLAAMLS 134

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L+ +P ++  +   +     L   LA      L    Y+   +        + +  +   
Sbjct: 135 LTVWPFLMLAALPLLAKRFDLLDRLAAFAIL-LGLIGYVADAVRTMRASAKAREEAEAQA 193

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +                    + AKS FLA MSHELRTP+N +LG +  +     G   +
Sbjct: 194 LEA------------------SRAKSAFLAMMSHELRTPMNGVLGLAHALR----GTKLD 231

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+  I +SG  L+ ++N+ILDLS+IEAG+  L  +   L  +  +   +    A+
Sbjct: 232 AQQSEYLEMIEQSGHGLMTILNDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESAR 291

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +++  ++ PS    V  D   +RQ+++NL+SNA+KFT   GRV + +G  +G    +
Sbjct: 292 LKGLDLILEVSPSAPPWVSGDATRVRQILMNLVSNALKFT-ESGRVVIRLGGEAGGVVTL 350

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G G+   +I  + T F QG  +I     G GLGL I + +     G+ ++ S+  
Sbjct: 351 SVTDTGVGMTAEQIGRLFTPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPG 410

Query: 464 EGVEVIAIL 472
            G      L
Sbjct: 411 VGSTFTVRL 419


>gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171]
          Length = 917

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 19/380 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + L               ++ LLIA+ +   +   L  +  ++     + L+   
Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPISQIKLAVAQ 207

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231
           +   ++                + I              Q   D    ++          
Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+
Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYL 323

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S  +LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+ 
Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407
                 +  ++  D   ++Q++ NL+SNA+KFT  G  V    +           IS++D
Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E
Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503

Query: 468 VIAI--LPNTR-VLNFIPED 484
                 LP TR  +  +P  
Sbjct: 504 FWISLNLPKTRDDVEDLPAA 523


>gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 713

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I  +   LL LI++ILDLS+IEAG  +L  S + + D++++   M QL+ +
Sbjct: 714 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLK 770

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++             ++  + Q+I+NL++NA+KFT   G +            Y  
Sbjct: 771 SDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQ-GSIRFGYKRQ-NNELYFY 828

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + +  ++   F +      S  QG GLGL I Q+++ + GG+  + S+   
Sbjct: 829 VADTGCGIPQDKQKSIFGRFVKL----NSFAQGTGLGLSICQTLVEHMGGKIGVESEEGN 884

Query: 465 GVEVIAILP---NTRVLNFIPED 484
           G      LP      V   +P+D
Sbjct: 885 GSTFWFTLPYKQAETVKKSLPKD 907


>gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 1039

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 713

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I  +   LL LI++ILDLS+IEAG  +L  S + + D++++   M QL+ +
Sbjct: 714 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLK 770

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++             ++  + Q+I+NL++NA+KFT   G +            Y  
Sbjct: 771 SDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQ-GSIRFGYKRQ-NNELYFY 828

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + +  ++   F +      S  QG GLGL I Q+++ + GG+  + S+   
Sbjct: 829 VADTGCGIPQDKQKSIFGRFVKL----NSFAQGTGLGLSICQTLVEHMGGKIGVESEEGN 884

Query: 465 GVEVIAILP---NTRVLNFIPED 484
           G      LP      V   +P+D
Sbjct: 885 GSTFWFTLPYKQAETVKKSLPKD 907


>gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 481

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  S   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 76  RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 135

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++   T+     E   E +  + RS   LL +I++ILDLS+IE+G + L+E 
Sbjct: 136 NSVLGMLDILRQSTL----TEDQSEVLNQMERSADLLLAIISDILDLSKIESGSFHLNEQ 191

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              L D V   I   +  A  KN+      +       W D   + Q++ NL+ NA KFT
Sbjct: 192 WTDLSDAVTLIISQQKQVATAKNLSFEFDCNLDKNKQYWIDSTRLSQILFNLIGNASKFT 251

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG + ++V         IS+ D G GI + ++  + T+F QG  +I     G GLGL 
Sbjct: 252 DFGG-IDISV-IEKDSELVISVADTGIGIPKAKVGHLFTAFHQGDSSITRRFGGTGLGLA 309

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP---EDNHES 488
           I + ++    G   ++S+   G      +P  TR     P   E NH S
Sbjct: 310 ITKHLVEMMRGTISVKSEENVGSHFKIRIPVLTRNNQERPVKIEQNHPS 358


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 10/273 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + +   ++      + I E           ++ AE  N +KS FLA+MSHE+RTPLNAI
Sbjct: 624 IRDDHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPLNAI 683

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GF+ +     +         +Y+  ++ +   LL +INEILD S+IEAG+ E   +  +
Sbjct: 684 IGFNTLALETQLTA----QQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAVFN 739

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
             ++++  I + Q +A  K + +      +L   +  D   + QV++NL+ NAVKFT   
Sbjct: 740 PREVLQNIINLFQQQAAHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTEQ- 798

Query: 387 GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G V +    T           S++D G G+A  ++  +   F Q   +I     G GLGL
Sbjct: 799 GAVSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGL 858

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I++ I+   GG     S+   G      +P +
Sbjct: 859 SISKRIVELTGGHIWAESEPGYGSVFSFNMPFS 891


>gi|17228673|ref|NP_485221.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130525|dbj|BAB73135.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 922

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 111/400 (27%), Positives = 170/400 (42%), Gaps = 34/400 (8%)

Query: 78  ITLAVYAANLSL-GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
             L     + +L G+ ++    +  E   W +      ++ G+ W  L +      +   
Sbjct: 308 ANLVSQILSAALDGRPLLRVWPEPAE---WLLVFCWSFVSSGVTWHGLQVNSQRKQSLPG 364

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             I     L+I LSIS +        +   + PV+  L T  + ++   ++         
Sbjct: 365 WPI-----LVILLSISIIFGSSYAAFMIGWWIPVMSPLLTTFLSTIVTTNL--------- 410

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                   Y   +        Q     L  ++       +  +  A+  N AKS FLASM
Sbjct: 411 --------YKQSQLEKANQQLQDYSRTLEEKVRDRTQELETAKIAADVANQAKSEFLASM 462

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN ILG+++++E             E I  IH+ G HLL LIN+ILDLS+IEA
Sbjct: 463 SHELRTPLNGILGYAQILER---SENIAPAALEGINIIHQCGSHLLILINDILDLSKIEA 519

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G+ EL  +       +   + M ++RA +K I      DP L   + ADEK +RQ+I+NL
Sbjct: 520 GKLELHNTDFDFSYFLTGVVEMCRIRALQKGISFHYLPDPDLPQAINADEKRLRQIIINL 579

Query: 376 LSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L NA+KFT  GG    + V             ++D G G+   ++  +   F Q      
Sbjct: 580 LGNAIKFTETGGVNFTIQVLEAGADFNKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDK-N 638

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +G GLGL I+  I    G Q  + S L  G +    L
Sbjct: 639 KQAEGTGLGLAISCRIAELMGSQIQVDSILGTGSKFWLDL 678


>gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)]
 gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)]
          Length = 984

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1059

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 8/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+  +      ++ AE  N AKS FLA+MSHE+RTPLN I G  E+++   +     
Sbjct: 515 VTPLKETERALSTAKQEAESANHAKSAFLATMSHEIRTPLNGITGMIELLQRSALSV--- 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I +    L++++N+ILDLS+IEAG+  L  +  S   ++   + ++Q +A+
Sbjct: 572 -EQRQQVETISKCSVVLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQAR 630

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402
            K +++   +D  L  ++  D   +RQV LNL+ NA+KFT  G  ++ + V        +
Sbjct: 631 NKELDLQLNMDEKLPSTMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVW 690

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +   ++D G GIA+ ++  +   F Q   +I     G GLGL I++ ++    G   + S
Sbjct: 691 VELAVQDQGIGIADEKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTS 750

Query: 461 KLREGVEVIAILPNTRVLNFIPEDN 485
              +G      LP       +P D 
Sbjct: 751 IEGKGTHFRVTLPMQVAHTPLPADA 775


>gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 512

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 21/321 (6%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           +++ +  L          +++        +  +  I+ A  +     F   I        
Sbjct: 204 TSVFSLFLISGGVAILLAIILVYIFSIRFTRPLKQINNAAKIIAGGDFQKRI-------- 255

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
             ++S Q E   L               +R EE       F+A++SHELRTP+ +I GF 
Sbjct: 256 --VVSSQDEIGQLADSFNHMVEDL----QRLEELRRG---FIANVSHELRTPMTSIRGFI 306

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E I     G +  E  K Y+  +      L  L+N++LDL+++E+G   L+     + ++
Sbjct: 307 EGILD---GTIPPERQKGYLTIVRDETNRLNRLVNDLLDLAKMESGELTLTMKPFDINEL 363

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +R C+I L+     KN+EI    +     V AD+  + +VI+NLL NAVKF+   G++ V
Sbjct: 364 IRICVIKLETLITSKNLEIEANFEIDNMMVSADKDSIERVIINLLHNAVKFSNENGKIIV 423

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                  +  Y+S+KDNG GI   +   +   F +   +    + G GLGL I ++I+  
Sbjct: 424 ETAKNKDK-IYVSVKDNGIGIDGDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNIVTE 482

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
           H     + S++ +G +    L
Sbjct: 483 HKQDIWVESEVGKGTKFTFTL 503


>gi|254506101|ref|ZP_05118245.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219550919|gb|EED27900.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 771

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI +        +  + +A+    AKS FLA++SHE+RTP+N +LG ++++    +
Sbjct: 285 EIRHLIDKFNQKTVFLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTDL 344

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  ++++  ++ SG H++ L+NEILD S+IE G  EL      L  I+     + 
Sbjct: 345 ----TEEQRKHLKTLYESGDHMMTLLNEILDFSKIEQGHLELEHQPFPLESIIGSINSVY 400

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                EK ++     + P      +D+  +RQ++ NLL+NAVKFT+  G V V       
Sbjct: 401 FTLCSEKGLQFKVISEVPQGRWYRSDKARLRQILFNLLTNAVKFTSR-GYVEVYFTEKRA 459

Query: 399 RGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            G    +I ++D G GIA+     +   F Q   +      G GLGL I + +     G 
Sbjct: 460 NGVDYLHIRVRDTGIGIAKESQEKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMDGD 519

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481
             + S++  G      L        +
Sbjct: 520 IHLTSEVGIGSCFEVQLKMESCEPAL 545


>gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 351

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 26/277 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + ++A+      +  AE  N A+S FLASMSHELRTPLNAI+G+SE++  + +   
Sbjct: 66  RDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLNAIIGYSELLREDAVDFG 125

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   + +  I  SG HLL +I +ILD+S++E+G   +     ++  +++E   ++Q  
Sbjct: 126 YTDFIPD-LDQIRASGLHLLTIIQDILDISKLESGMMTVCLENFNIATLIKEIEALVQPL 184

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG---------------- 386
             + + ++     P +  ++AD   ++QV+LNLLSNA KFT  G                
Sbjct: 185 FPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENGLVNLNVIYIGQLDTKI 244

Query: 387 ---------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                      V V        G    + D G G+   ++  +   F +   +     +G
Sbjct: 245 SAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIFEPFERADNSTTRRYEG 304

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL I++      GG   + S++ EG    A  P 
Sbjct: 305 TGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFPL 341


>gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
 gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
          Length = 747

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 153/325 (47%), Gaps = 23/325 (7%)

Query: 186 DISLAGMLATALSFFTYITYHLF----------KSNVKILSCQAEKDDLIAELEVAKSLS 235
            I +AG +    +   Y    L           + N   L    E + +  +L+ AK+++
Sbjct: 280 TILMAGFILLLFAGLFYSISRLSLADQKAEYEKRKNELHLQTMKEMEVVNQKLKKAKNVA 339

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E  + AE  N AK+ FL++MSH++RTP+NAI+G + +I        N     EY   I 
Sbjct: 340 KEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKID 396

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S QHLL +IN++LD+S+IEAG+     S  S++D+V+E   +   +  EK   +    +
Sbjct: 397 SSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQQTLTIIKE 456

Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409
                 V  D+  + Q+  NLLSNAVK+T  GG++   V     +          + DNG
Sbjct: 457 NIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVYAKYRFLVSDNG 516

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++     T+  +F +   ++ +  QG GLG+ I ++++   GG   + S+L +G    
Sbjct: 517 MGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQGSCFE 576

Query: 470 AILPNT----RVLNFIPEDNHESTQ 490
            +L       R +    ++  +   
Sbjct: 577 VLLDLKIAEDRTVALAAQEETDEQD 601


>gi|326474208|gb|EGD98217.1| DRK1 histidine kinase [Trichophyton tonsurans CBS 112818]
          Length = 1331

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 870 KHVPPPPADGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1310

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE+ N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 698 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 757

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 758 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 814

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 815 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 873

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 874 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 933

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 934 SKRLVNLMGGDVWVTSEYGHGSTFHFT 960


>gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
 gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
          Length = 569

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVEDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI+I       +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVG-GKVPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V++             ++D G GI++  +  +   F + 
Sbjct: 461 YNQMIINLIDNAIKYTEPNGEVNIGTRQDKDN-IIFWVEDTGVGISKEHLDRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+    G+  ++S+ ++G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 105/336 (31%), Positives = 162/336 (48%), Gaps = 9/336 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             +  A S+             +               D+++A     A  +F ++   +
Sbjct: 104 GFARLAGSSPGALLGTAQQLTVLDSTPVESRPDGTRAADVAVAPPEGGATRWFAFVETAV 163

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              + +     A ++  I E   A    DE R RAE  ++AKSRFLA++SHE RTPLN I
Sbjct: 164 VGRDGRPEVLSAGRE--ITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGI 221

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++    + P      + YI  +  SG+ LL+LI+ ILD S+IEAGR +L+     
Sbjct: 222 LGMADLVLDTPLSP----EQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFD 277

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
              +V   + +L  RAQ+K +EI   +   L   V  D   +RQ++LNL  NAVKFT  G
Sbjct: 278 PAGLVESVVELLAPRAQDKGLEIAADLAEDLPLQVVGDSDRVRQILLNLAGNAVKFTESG 337

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V VT    +G    ++++D GPGI E  +P +   F QG  +     +G GLGL I +
Sbjct: 338 G-VGVTAER-AGAEIALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITR 395

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            ++   GG+  + S+  EG     +LP   +    P
Sbjct: 396 RLVDRMGGRIEVTSRPDEGSCFRVVLPLRALGEERP 431


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  282 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 139/272 (51%), Gaps = 5/272 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L K   ++             LE   +   + ++ AEE N  KS+F+A++SHELRTP+NA
Sbjct: 129 LHKLKKQLEEKNQTLQQQNQTLEAVITALQKAKQAAEEANSVKSQFMANISHELRTPMNA 188

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G+SE+++ E           + I +I ++G+HLL++IN++LD S+IE G+  LS    
Sbjct: 189 IIGYSELLKEEAEDLQITGLVDD-IDNIEKAGRHLLDIINDVLDFSKIETGKMTLSLENF 247

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            ++ ++ +  +++Q   + +   +      ++ +++AD   +R+++LNLLSNA KFT   
Sbjct: 248 EILILINDIKMIVQPLVKNQLNHLEIDCADNIGAMYADLSKVRRILLNLLSNASKFT-EN 306

Query: 387 GRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G + + V   S    +     + D G GI + +   +  +F Q   +      G+G+GL 
Sbjct: 307 GTIKLIVSKESEENTQWIKFKVNDTGIGITDEQQQQIFHTFTQADGSSTRKYGGIGMGLT 366

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + +  +    G   + S+L +G      LP  
Sbjct: 367 VTKRFVDIMQGTIHVESQLGQGSTFTVRLPIK 398


>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1088

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 23/332 (6%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             ++  S    V+A++    +   ++ I      A   +    +   L +        +A
Sbjct: 301 RASIVKSQAVQVLAIAISIWILGVIIAILGYFFSAEITTNIKNLESVLKRVAEDTHDNEA 360

Query: 220 E------KDDLIAELEVAKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNA 266
           E        D  A    A +L +         ++ A E + AKS FLA+MSHE+RTPLN 
Sbjct: 361 EALRHTINLDTAAGTAQAYALLERIIEQTLNDKQYAMEASEAKSMFLANMSHEIRTPLNG 420

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GF+E+++   +     +  +E+I  I +S ++LL +IN ILDLS+IE+ + E+ E   
Sbjct: 421 IVGFTELLKDTELH----DEQREFIDIIEKSSENLLEIINNILDLSKIESNKLEIEEIVF 476

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           + ID     + +  +RA EK+I++   +DPSL   +  D   +++VI+NLLSNAVKFT  
Sbjct: 477 NPIDEFESAVEVYGVRASEKHIDLACYVDPSLERPLKGDPTKIKEVIINLLSNAVKFTNS 536

Query: 386 GGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG + V +                +KDNG G+   +   +  +F Q   +I     G GL
Sbjct: 537 GGAISVDIRRIECEILNRTRIRFQVKDNGIGVTSEQRSRIFEAFSQADTSITRKYGGTGL 596

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I+   +   G +  + S+   G      L
Sbjct: 597 GLTISSRFVELMGSKLDLESEPGNGTSFFFTL 628


>gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 657

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 148/288 (51%), Gaps = 2/288 (0%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            ++A    T    +      L +      + +AE+  L   +E   +         E  +
Sbjct: 207 ATMAAAAITNAQLYAQAQQELTERRRAEAALEAERAQLARRVEERTADLMVANAELERAS 266

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K  FLA+MSHELRTPLN ILG +E++     GP+ N+   E +  +  SG+HLL LIN
Sbjct: 267 RLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPI-NQEQHEAVRSMSESGRHLLALIN 325

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +ILDLS+IEAG+ EL  S + ++ +    I M+   A +K I +   I P +  ++ADE+
Sbjct: 326 DILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSISPQVDVIYADER 385

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFG 425
            ++Q+++NLLSNAVKFT  GG+V + V      +    ++ D G GIAE ++  +   F 
Sbjct: 386 RLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAEADMARLFQPFV 445

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q    +     G GLGL + Q +   HGG   ++S+   G      LP
Sbjct: 446 QIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLP 493


>gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1309

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE+ N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 698 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 757

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 758 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 814

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 815 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 873

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 874 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 933

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 934 SKRLVNLMGGDVWVTSEYGHGSTFHFT 960


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 12/249 (4%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               + +++AE+ + AKS FLA+MSHE+RTPLNA++G S+++   ++    ++  ++++  
Sbjct: 913  EIKQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSL----DKRQQDHLNK 968

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            +  S + LL +IN+ILD S+IE+G+ EL      L ++V     +       K +E+   
Sbjct: 969  VLSSSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYS 1028

Query: 354  IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKD 407
            + P +  V   D   + QV+ NLLSNA KFT  GG V + +                ++D
Sbjct: 1029 LPPQIPCVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKADSVTLRFFVRD 1088

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G G++E ++  +  +F Q   +      G GLGL I++ ++   GG     SK  +G  
Sbjct: 1089 TGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEATSKPGQGST 1148

Query: 468  VIA--ILPN 474
                  LP 
Sbjct: 1149 FAFELTLPL 1157


>gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 573

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 158/276 (57%), Gaps = 3/276 (1%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +T ++  +   +           D I + +  +     ++  AE  + AKS FLA+MS
Sbjct: 297 LVWTRLSVSVIPGSYGEPEYFLAIIDDITDRKQTEMKLRASQAAAEAGSRAKSEFLATMS 356

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAI+G S++++ E +G L NE  +EYI  I+ SG+HLL LIN+ILDLS++EAG
Sbjct: 357 HELRTPLNAIMGLSQLLQQEIVGSL-NEKQQEYISCIYSSGEHLLALINDILDLSKVEAG 415

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + EL    + +ID+  + ++ ++ RA  K +++ Q+IDP  S   AD++ ++Q++LNLL+
Sbjct: 416 KEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRRIKQMLLNLLT 475

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT++ G V +TV        +I I D G GI   + P +   F Q    +    +G
Sbjct: 476 NAIKFTSV-GEVSLTVKRVPEGINFI-ISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEG 533

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + +   HGG   + S +  G +    LP
Sbjct: 534 TGLGLALTRKLARLHGGDVTVTSTVGVGSQFTLFLP 569


>gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 572

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 181/446 (40%), Gaps = 34/446 (7%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           +   + + I  +   L  V+        ++     +  + P   +  L  LA    N ++
Sbjct: 3   QERLEAKQIDSNTSLLRPVAYFFGFLYAVLTVAHFFLLEEPFKWILFLAALATAVINTAV 62

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G +  + D             +V  + I L      L    +  PE      +   +  +
Sbjct: 63  GFRANDIDPP--------RKEVVLLLLIFLASANSFLHLWLSQAPEQ----TTNIFVTVI 110

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +   + +    +   + F  +   + +  +    +     A  ++T LS+F ++      
Sbjct: 111 ASGIVLSHRALWCSAVLFNWIGWIVISNVLQMALIQHFFFAMAMSTLLSWFAHLARK--- 167

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                 +   ++ +L  E ++A     E +        AKS FLA+MSHE+RTP+N ++G
Sbjct: 168 ------NLVEKQQELERERDIALKHEKEAK----AATEAKSAFLANMSHEIRTPMNGVIG 217

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E++    +     +  ++YI    RS   L+ +IN+ILD S+IE G   +      + 
Sbjct: 218 MIELVSQTKL----EKVQQDYIATAKRSADSLMVIINDILDFSKIEVGELTIELVEFDVE 273

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
               E +   Q +A EK +++    +    + V  D   +RQ++ NLLSNA+KFT   G 
Sbjct: 274 QFFAELLHDQQFQASEKGLKLSLIKEELQHTKVVGDPYRIRQIVNNLLSNAIKFT-QSGH 332

Query: 389 VHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           + V    TS       + ++ D G G++   +P +  SF Q   +      G GLGL I 
Sbjct: 333 IQVRYSLTSSSDNLELHCAVTDTGIGVSNEALPYLFDSFSQADTSTTRKFGGTGLGLSIT 392

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + +    GG   ++S+L +G      
Sbjct: 393 KQLCNLMGGDIKVQSQLGKGSTFEFS 418


>gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo]
 gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo]
          Length = 688

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 6/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ ++        R  AE+ N AKS+FLA+MSHE+RTPLNAILG  +V+  +     N 
Sbjct: 303 ISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVLLSKCTDKNNT 362

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +     +  S + LL +I+++LDLS+IE+GR ELS  ++++ D+V   +   QL A 
Sbjct: 363 DVLR----MMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLVAN 418

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +++   +   +   +  D   + Q++ NL+ NAVKFT   G + V V    G+   I
Sbjct: 419 EKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEA-GEIRVKVIRQPGQTLVI 477

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI E  +  V   F Q   +I     G GLGL I++ +    GG   ++S+  
Sbjct: 478 RVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQRH 537

Query: 464 EGVEVIAILP 473
           +G E    LP
Sbjct: 538 QGSEFTLTLP 547


>gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 431

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 137/253 (54%), Gaps = 12/253 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L+ A++  +  R++AE  + +KS FLA+MSHE+RTPLNAI+GFSE++        
Sbjct: 170 HDITRLKKAEAELNRAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAS----AS 225

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +++  +H + + L  LI +ILDLS+IEAG  E + S + +  ++ +   + ++R
Sbjct: 226 TEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLFRMR 285

Query: 343 AQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            ++K+  I+I ++  P    ++ D   ++QV+ N ++NAVKFT   G +       +   
Sbjct: 286 LEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTNAVKFTDE-GSITFGYNRCAEG- 343

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y  +KD G GI E ++  +   F +        ++G GLGL I + I+   GG+  + S
Sbjct: 344 LYFYVKDTGSGIPEDKVNHIFERFVRVEQ----NKKGTGLGLAICEMIIRKLGGKIGVES 399

Query: 461 KLREGVEVIAILP 473
           +  +G      LP
Sbjct: 400 EYGKGSTFWFTLP 412


>gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 757

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/402 (25%), Positives = 159/402 (39%), Gaps = 15/402 (3%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTW 132
            L+TL +         +         +           L   +  G  +          +
Sbjct: 360 ILLTLFILWTLFYQRVQYRREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEF 419

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
             +    YKS  +LI    S      +       F      L T                
Sbjct: 420 DHD---FYKSLDMLIKPITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNG 476

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
                  F Y      + + +           I + +  +    + R RAEE +  KS F
Sbjct: 477 KGHIWWEFRYAQAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAF 536

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLNAI+GFSE++  +    ++     E++  I ++   LL LIN+ILDLS
Sbjct: 537 LANMSHEIRTPLNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLS 594

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           RIE+G+   + +   L +++       QL   +  + +  ++    + + AD   + QVI
Sbjct: 595 RIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVI 653

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            NL++NA KFT   G + +   +T  +    IS+ D G GI   +   V   F +     
Sbjct: 654 TNLINNAAKFTTQ-GYILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDE-- 710

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               QG GLGL I Q I+ + GG   + SK  EG   I  LP
Sbjct: 711 --FAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 750


>gi|288869902|ref|ZP_06112218.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869200|gb|EFD01499.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 950

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 139/267 (52%), Gaps = 9/267 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           AE E  K   +E  + A   N AK+ FL+SMSH++RTP+NAI+G + + +     P   E
Sbjct: 416 AEQERQKKALEEAYQAARVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLSSP---E 472

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I+ S +HLL+L+NE+LD+SRIE+G+ +L+   + L +++     M +    E
Sbjct: 473 KIRDCLSKINVSSRHLLSLVNEVLDMSRIESGKIDLTPEEVKLPELIENVFAMCKPLISE 532

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399
           K+++           +V  D   ++QV++NLL+NAVK+T  GGR+ +++           
Sbjct: 533 KDLQFQISASKVRHETVITDGDRLQQVLINLLTNAVKYTPNGGRISLSIKEIPSLSSQKA 592

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I D G G++E  +P +   F +   +  S  QG GLG+ I ++I+    G   + 
Sbjct: 593 QFEFIITDTGIGMSEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGSIEVT 652

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNH 486
           S+L EG +    +    V   + +   
Sbjct: 653 SRLGEGSQFTVTVQLELVNEEVTDTEE 679


>gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1313

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE+ N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 708 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 767

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 768 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 824

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 825 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 883

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 884 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 943

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 944 SKRLVNLMGGDVWVTSEYGHGSTFHFT 970


>gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
 gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
          Length = 381

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 12/253 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L+ A+    + R++AE  + +KS FLA+MSHE+RTPLNAI+GFSE++        
Sbjct: 120 HDITRLKKAEVELHKAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAS----AS 175

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +++  +H + + L  LI +ILDLS+IEAG  E + S + +  ++ +   + ++R
Sbjct: 176 TEEEKTQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLFRMR 235

Query: 343 AQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            ++K   I+I ++       ++ D   ++QV+ N ++NAVKFT   G +       +   
Sbjct: 236 LEDKAAVIQIIRETPADECIMYTDRNRLQQVVSNFMTNAVKFTDE-GSITFGYNRCAEG- 293

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y  +KD G GI E ++  +   F +        ++G GLGL I + I+   GG+  + S
Sbjct: 294 LYFYVKDTGSGIPEDKVNHIFERFVRVEQ----NKKGTGLGLAICEMIIRKLGGKIGVES 349

Query: 461 KLREGVEVIAILP 473
           +  +G     ILP
Sbjct: 350 EYGKGSTFWFILP 362


>gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 783

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1]
          Length = 917

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 21/286 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251
           + + + +    + +   E    I +           +E+     D  RK A E +  KS 
Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+  I +S  +LL +INEILD 
Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       + +S+  D   ++Q
Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++ NL+SNA+KFT   G + V               IS++D G G++  ++ T+  +F Q
Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++     G GLGL I++ ++   GG+  + S   EG +    L
Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 934

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  ++     R +AE  +  KS FLA+MSHE+RTPLNAI+GFS+++        + 
Sbjct: 687 ITKLKETEAELIHARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETA----DI 742

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  +  +   LL LI++ILDLS+IEAG +E S   + +  +  + +  +Q++ +
Sbjct: 743 EERREYMKIVRENNDLLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKTK 802

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E N+++  + + S+  + +D   + QVI N ++NA+KFT+ G    + VG+     G   
Sbjct: 803 E-NVKLVFEPNFSICHITSDRNRIYQVISNFVNNAIKFTSEGN---IRVGYVLKDEGLEF 858

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + ++P +   F +      S   G GLGL I QSI+   GG   + S+  
Sbjct: 859 YVQDTGIGIEKKQLPHIFERFVKLD----SFVHGTGLGLSICQSIVEQLGGHIGVDSEKG 914

Query: 464 EGVEVIAILP 473
           +G      +P
Sbjct: 915 KGSRFWFTIP 924


>gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 785

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 8/279 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +    +  L+      +E R +AE    AKS FLA+MSHELRTP+N +LG S++I  ET
Sbjct: 240 YQSHHRMHNLKQLNLEIEEARNKAERAAKAKSNFLAAMSHELRTPMNGVLGLSQMIAEET 299

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P      KE+I  I  SGQHL+ ++N+ILD S++E  + E  ++   L  ++      
Sbjct: 300 KEPTT----KEHIRVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSA 355

Query: 339 LQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           ++    EKNIE+  + +    +    D   +RQ++ NL  NAVKFT   G V V      
Sbjct: 356 IKPLVDEKNIELILENEVSEYTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLVRTELDE 414

Query: 398 GRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                +  + D G GIA  +   +  SF Q   +      G GLGL I + +    GG  
Sbjct: 415 SNQLLVMRVSDTGIGIAPDKHEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHI 474

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            ++S    G + I  LP   V    P+   E+ + +  +
Sbjct: 475 TLKSIEGVGSQFIVELPIPWV-ESAPKKQQEAPKPRAKS 512


>gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13]
 gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
 gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
          Length = 783

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 603

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 146/271 (53%), Gaps = 3/271 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+        + +  E  N  K++FLA+ SHE+RTPL++I+GF+ ++  +   P   
Sbjct: 209 IQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDP-TR 267

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E + EY+  I  SG+HLL LIN+ILDLS+IEA + E+    +++ ++ +  + +++ +A 
Sbjct: 268 ERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAA 327

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K +++  ++DP++ +  AD   ++Q++LNLL NA+KFT   G V + V        + +
Sbjct: 328 NKGVKLSLELDPNIKTFVADPLRLKQMLLNLLFNALKFTNQ-GTVGLKVTQQ-DSFIHFT 385

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+   +  +   + Q   +  +  +G GLGL + + +   H G   + S++  
Sbjct: 386 VWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVAH 445

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           G     ILP  +    +  ++ E  + K  A
Sbjct: 446 GSRFTIILPLQQNEQVLVGEDVEDEETKSAA 476


>gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
 gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
          Length = 1057

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    E + +AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 675 ITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLIAET----EDP 730

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EY+  +  + + LL LI++ILDLS+IEAG  E ++    +  + +E +  L L+  
Sbjct: 731 DERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSLKVL 790

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K +E+          +  D+  + QV++N ++NA+KFT   G V +      G      
Sbjct: 791 DKPVELRFGDHLPECRLVGDKTRITQVLINFINNALKFTRE-GSVTLGYRCDDGMMLTFY 849

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E E  +V   F +      S  QG GLGL I++SI+   GG+  + S+  +
Sbjct: 850 VEDTGTGIPEQEQESVFERFVKL----NSFVQGTGLGLAISKSIVEQMGGRIGLNSEPGK 905

Query: 465 GVEVIAILP--NTRVLNFIPEDNH 486
           G       P   TR ++ +  D  
Sbjct: 906 GSCFWFTHPYIRTRSVSAVASDAE 929


>gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134]
 gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134]
          Length = 1808

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 17/260 (6%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + +  +    + ++ AE+   AK +FL++MSHE+RTP+NA++G + ++  E   P   
Sbjct: 1275 ITDSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEEDHKP--- 1331

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +  +  S ++LL LIN+ILD ++IEAG+        +L + +         +A 
Sbjct: 1332 -EQLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAA 1390

Query: 345  EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------ 397
            EK IE+   ++  + ++   D   + Q++ NLL NA+KFT   G V V V          
Sbjct: 1391 EKGIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDK-GFVVVKVQLQETLPDKQ 1449

Query: 398  -----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       S+KD+G GIA  +  T+   F Q          G GLGL I + ++ + 
Sbjct: 1450 NIPHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQ 1509

Query: 453  GGQFLIRSKLREGVEVIAIL 472
            GG+  + S+L +G E    L
Sbjct: 1510 GGEIGLHSELGKGSEFYFFL 1529


>gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
 gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
          Length = 768

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + R RAEE +  KS FLA+MSHE+RTPLNAI+GFSE++  +    ++ 
Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I ++   LL LIN+ILDLSRIE+G+   + +   L +++       QL   
Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +  + +  ++    + + AD   + QVI NL++NA KFT   G + +   +T  +    I
Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   +   V   F +         QG GLGL I Q I+ + GG   + SK  
Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751

Query: 464 EGVEVIAILP 473
           EG   I  LP
Sbjct: 752 EGSTFIVTLP 761


>gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 768

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + R RAEE +  KS FLA+MSHE+RTPLNAI+GFSE++  +    ++ 
Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I ++   LL LIN+ILDLSRIE+G+   + +   L +++       QL   
Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +  + +  ++    + + AD   + QVI NL++NA KFT   G + +   +T  +    I
Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   +   V   F +         QG GLGL I Q I+ + GG   + SK  
Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751

Query: 464 EGVEVIAILP 473
           EG   I  LP
Sbjct: 752 EGSTFIVTLP 761


>gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 768

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + R RAEE +  KS FLA+MSHE+RTPLNAI+GFSE++  +    ++ 
Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I ++   LL LIN+ILDLSRIE+G+   + +   L +++       QL   
Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +  + +  ++    + + AD   + QVI NL++NA KFT   G + +   +T  +    I
Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   +   V   F +         QG GLGL I Q I+ + GG   + SK  
Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751

Query: 464 EGVEVIAILP 473
           EG   I  LP
Sbjct: 752 EGSTFIVTLP 761


>gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 768

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + R RAEE +  KS FLA+MSHE+RTPLNAI+GFSE++  +    ++ 
Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I ++   LL LIN+ILDLSRIE+G+   + +   L +++       QL   
Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +  + +  ++    + + AD   + QVI NL++NA KFT   G + +   +T  +    I
Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   +   V   F +         QG GLGL I Q I+ + GG   + SK  
Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751

Query: 464 EGVEVIAILP 473
           EG   I  LP
Sbjct: 752 EGSTFIVTLP 761


>gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi]
          Length = 922

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 153/349 (43%), Gaps = 27/349 (7%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
              +  LL  + ++ L  + L   V      +V       I    +       +    L 
Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDVTAPIRNMVET--VDRIRRGQLDSR----VEGHMLG 228

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247
               +   +    + + +   E    I            ++E+     D  +KRA+E   
Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+     +T+      T K+Y+  I RS  +LLN+IN+
Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 344

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LD S++EAG+  L     SL + + E I++L   A EK +E+   I   +      D  
Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLT 422
            ++Q+I NLL NA+KFT   G + + +             I IKD G GIAE +   +  
Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQENLRVLLEIQIKDTGIGIAEAQQTQLFQ 463

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q ++   GG     SKL +G      
Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCT 512


>gi|325105218|ref|YP_004274872.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974066|gb|ADY53050.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 787

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 175/475 (36%), Gaps = 28/475 (5%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKKVMNSDI 98
           +       ++    L++                  ++  +   +Y+  +   +  +   +
Sbjct: 194 KDRSDAIILILTGCLIMGGFFFLALFLVGRRDNAILFFALFSILYSYRIIGTESYVLHSL 253

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSN 156
                +   I L    +   +    L    + P       +    +  +  +L+    S 
Sbjct: 254 FPNISWFLSIRLEYFSLFSSIGLFTLYNRFLFPQDVNKYIVRTVVTICISFSLATIFFSP 313

Query: 157 FMLPYAVFLSFFPVVVALSTQAIM---------SMHVLDISLAGMLATALSFFTYITYHL 207
           F+    +    F  +  L+    +            +  I+   +L    S   +  + L
Sbjct: 314 FIFTQLINPFLFVCLFCLTYTPYVYLLAYKRKRPGAIYTIASTLVLVLIFSLTLFRYWRL 373

Query: 208 FKSNVKILSCQAEK---DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +  +             +A            +K AE   +AKS FL++MSHE+RTPL
Sbjct: 374 IDHHQILNFFGYISIFFLQSLALSHRVSFALRRAKKEAETGLIAKSEFLSTMSHEIRTPL 433

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+++G + ++   +      E  KE +  +  S  +LL ++N+ILD ++IEAG+      
Sbjct: 434 NSVIGVTHLLLKNS----PREDQKEQLDIMLFSANNLLAIVNDILDYNKIEAGKISFENI 489

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
            + +  + +  I      A +K IE+   +D +L   +  D   + Q++ NL+ NA+KFT
Sbjct: 490 KMDISKLAQNLISSQLSFADDKGIELRLNLDKNLSPHLKGDPTRLHQILSNLVHNAIKFT 549

Query: 384 AIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G     + V     + +  Y  +KD+G GI++ +   +   F Q   +   +  G GL
Sbjct: 550 QKGFVELGIVVKNSNDNKQTLYFYVKDSGIGISKEKQDIIFDQFTQADSSTSRSFGGTGL 609

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQYKC 493
           GL I + I+     +  + S+  +G             VL      +      K 
Sbjct: 610 GLAICKRILELQHSELRLESEENKGSTFFFTHTFEKETVLENSSSADQTVFDKKT 664


>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1153

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 20/297 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-------LIAELEVA-KSLSDETRKR 241
           AG                F     +L  + E +        L+   E   + +++  ++ 
Sbjct: 321 AGEAVGVEVRGVRRDGSFFWGEFTVLRVEGEAESSRSYECILVDTTERKFREIAEREKQA 380

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A   N  KS F+A+MSHE+RTP+NAI+G S +     +        ++Y+  I  S Q L
Sbjct: 381 AVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTS----RQRDYLTKIEYSAQSL 436

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L +IN+ILDLS+IEAGR  +      L D +     M+ ++A EK +++   I   + + 
Sbjct: 437 LRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADEKGLDVIFDIGKDVPTG 496

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAE 414
           +  D   + QV+LNL  NAVKFT   G+V + V          G     S+ D G G+  
Sbjct: 497 LIGDPTRLNQVLLNLTDNAVKFTEQ-GQVIIKVRREREAADVQGSTLRFSVIDTGIGMRA 555

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + P +  SF Q   +I     G GLGL I++ I+   GG+  + S+   G      
Sbjct: 556 QQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGEISVSSEFGVGSTFTFT 612


>gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1]
 gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1]
          Length = 783

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|83772706|dbj|BAE62834.1| unnamed protein product [Aspergillus oryzae]
          Length = 1362

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 728 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 787

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 788 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 844

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 845 FNALKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKL 903

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 904 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 963

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 964 SKRLVNLMGGDVWVTSEYGHGSTFHFT 990


>gi|117926619|ref|YP_867236.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610375|gb|ABK45830.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1390

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 11/299 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
              +   +  +    +   +     L+       +      A       ++RAE  N AK
Sbjct: 666 GAQVLGVMVLYLAHGHEQKERETAFLARAGHIISMGLMRRRAAKELSCAKQRAERANHAK 725

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+R P+NAI+  S +   ++     ++  ++Y+  IH +GQ LL +IN+IL
Sbjct: 726 SDFLATMSHEIRNPMNAIIALSHLALEQSH----DQRQRDYLSKIHTAGQSLLRIINDIL 781

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S+IEAG+ E+ ++   L D++     +  ++AQEK IE+     P+L   +  D   +
Sbjct: 782 DFSKIEAGKLEIEQTDFQLDDVLSNLATLTAVKAQEKQIELIFDKAPALPHALRGDPLRL 841

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSF 424
            Q++LN++ NA+KFT   G V +++   + RG       +++D G G+ E +I  +   +
Sbjct: 842 SQILLNVVGNAIKFTEQ-GEVEMSITRHTQRGELLELCFTVRDTGIGMNEAQIAELFRPY 900

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            Q   +      G GLGL I+  ++    G   + S    G + +  LP   VL   PE
Sbjct: 901 QQAESSTSRRFGGSGLGLSISHQLVTLMNGTIQVSSTPGVGSQFVITLPFA-VLPDRPE 958


>gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 922

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 153/349 (43%), Gaps = 27/349 (7%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
              +  LL  + ++ L  + L   V      +V       I    +       +    L 
Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDVTAPIRNMVET--VDRIRRGQLDSR----VEGHMLG 228

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247
               +   +    + + +   E    I            ++E+     D  +KRA+E   
Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHELRTPLN ++GF+     +T+      T K+Y+  I RS  +LLN+IN+
Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 344

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LD S++EAG+  L     SL + + E I++L   A EK +E+   I   +      D  
Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422
            ++Q+I NLL NA+KFT   G + + +             I IKD G GIAE +   +  
Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQ 463

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +F Q   +I     G GLGL I Q ++   GG     SKL +G      
Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCT 512


>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1052

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  + L  E R RAE  N AKS FLA+MSHE+RTP+NA++GF+       +    +
Sbjct: 483 ITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFT----DLLLDSGLD 538

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   +Y   I +SG+ L++LIN+ILD S+IEAG  +  E       +  +   M++ R  
Sbjct: 539 DIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRIG 598

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK IEI   I  ++   +  D   +RQV+ NL++NA KFT   G + +++         +
Sbjct: 599 EKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEA-GEIELSLDVEEEDEGRV 657

Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G GIA  ++  +   F Q   +      G GLGL I + I    GG     
Sbjct: 658 KLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWAE 717

Query: 460 SKLREGVEVIAI 471
           S   +G      
Sbjct: 718 SDEGKGSIFHFT 729


>gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 970

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 16/303 (5%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           A  L     I   +    +     Q  +D L   +    +     R++AE  N AKS FL
Sbjct: 323 AGTLIGVLGIGRDITALKLTEQELQNHRDHLEDLVAERTAELMAAREQAEAANQAKSVFL 382

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+NA+LGF  ++    +   +     + +  I  SG  LLNLI +ILD SR
Sbjct: 383 ATMSHEIRTPMNAVLGFCNLLYRRRLDAES----HDLVRKIQVSGALLLNLIEDILDFSR 438

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEA R E++ S   L  ++ +   +++  A  K +E+     P ++ +  DE+ ++QV+L
Sbjct: 439 IEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLELEIAPLPEVNDLIGDERRLKQVLL 498

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            LL+NAVKFT   GRV + V   S   +      S++D+G GIA  +   + ++F Q   
Sbjct: 499 KLLANAVKFTEQ-GRVEIRVDLESEDMREVRLRFSVRDSGIGIAPAQQAAIFSAFNQADG 557

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-------VLNFIP 482
           +I     G GLGL I+Q ++   GG+  + S+L  G E    LP  R       V    P
Sbjct: 558 SISRRFGGTGLGLAISQQLVHAMGGRLQVTSELGRGSEFWFELPFRRDPRALSGVTAAQP 617

Query: 483 EDN 485
            ++
Sbjct: 618 SED 620


>gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 635

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I        
Sbjct: 256 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 311

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 312 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 371

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +  N+E+             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 372 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 428

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 429 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 484

Query: 463 REGVEVIAILPNTRVLNFIPE 483
            +G      LP   V   + E
Sbjct: 485 GQGSTFALYLPYQEVPKEVAE 505


>gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 683

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 152/289 (52%), Gaps = 7/289 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             ++    +   ++++ + + +   EK  L   +        +    AE  N  +S FLA
Sbjct: 398 LLIAIAEQLAIAIYQAEL-MQTLTQEKQTLEQRVIERTIGLRDALLAAEAANRLRSEFLA 456

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHEL TPL  ++G S  +    +G L+ +  ++Y+  IH SG+HLL +IN+ILDLS+I
Sbjct: 457 TISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLEMINDILDLSQI 515

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           EAG+  L+ S  SL+++  + +  L+ +A  ++ N+ +  +IDPS     AD + + Q++
Sbjct: 516 EAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQIDPSRDRFTADAERVAQIL 575

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL+NA+KFT   G V + + W         ++D G GI E ++P +   F Q     +
Sbjct: 576 SNLLTNAIKFTPESGNVTLRL-WVEDDTAIFQVEDTGIGIREEQLPLLFEKFQQLDTPYR 634

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLN 479
              +G GLGL + + ++  H G+  + S +  G      +P    RVL+
Sbjct: 635 RRYEGTGLGLALTKQLVELHRGRIEVESTISIGSIFTVWIPTQAMRVLS 683


>gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 798

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 796


>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
 gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
          Length = 962

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 7/252 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHELRTPL+++LGF+E++  + + P   E  K+Y+  I++  + L  
Sbjct: 584 EVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKP---ERQKKYLTTIYQEAKRLTA 640

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ R+E+G+    +    ++ I+   I     +   K  +   + + + ++V  
Sbjct: 641 LINDFLDVQRMESGKQTYDKKYEDIVSIIENVIET--QKVNTKIHQFHVQKETNNTTVLG 698

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NL+SNA+K++  GG + V + +  G    + ++D G GI E  IP + T 
Sbjct: 699 DRDKLAQVFTNLISNAIKYSPEGGNITVRI-YERGTRLCVDVQDEGLGIPEEAIPNLFTK 757

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   + +    G GLGL I + I+  H G+  + S+L++G      LP   VL    E
Sbjct: 758 FYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLPLV-VLASEEE 816

Query: 484 DNHESTQYKCYA 495
              ++     +A
Sbjct: 817 GERDNNDKHAHA 828


>gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 886

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 98/297 (32%), Positives = 153/297 (51%), Gaps = 5/297 (1%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAE 243
                ++ T LS    I      S    +S  AE   L  E    + A+S   E ++ AE
Sbjct: 591 WVGGEVVGTILSEQIDIPRTWEVSEQNFVSSIAEFVALTLEVCDRKSAESALREAKEAAE 650

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AK  FL +MSHELRTPL++IL  +E ++ E  G +  E  ++++  +  SG++LL 
Sbjct: 651 VANRAKKTFLVNMSHELRTPLSSILEIAEALQNEVYGTVT-EEQRQFLNTLESSGKNLLE 709

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+IL+L+ IE+ + EL  +A  + ++    +  ++  A +KNI++  +I   L  +  
Sbjct: 710 LINQILELTDIESSKIELQLAATFIPELCDSSLSFVKNLALQKNIQLSVQIPEELEPIQV 769

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLT 422
           DE+ +RQV +NLLSNA+KFT  GG+V + V   S     + S+ D G G+   ++  +  
Sbjct: 770 DERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNSTNEYIFFSVVDTGIGMLSDDLFRLFQ 829

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F Q   A      G GLGL + Q I+  HGG     S+L +G      LP  +V  
Sbjct: 830 PFIQVENASTRRSAGTGLGLVMVQKIVELHGGTVHAESQLGKGSRFTVKLPWKKVGE 886


>gi|326477630|gb|EGE01640.1| two-component osmosensing histidine kinase [Trichophyton equinum
           CBS 127.97]
          Length = 1321

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 870 KHVPPPPADGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 812

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 150/272 (55%), Gaps = 10/272 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L+ ++ +I    A + D+   +E+ +SL  +  + AE  N+AKS+FLA+MSHELRTP+N 
Sbjct: 396 LYSTHGQIEGFMAVERDITQRVELEESLKIKAVE-AEAANIAKSQFLAAMSHELRTPMNG 454

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG  ++++  T+    NE  +EY+     SG+H+LN++N+ILD S+IEAG+ EL +   
Sbjct: 455 ILGVGDLLKNTTL----NEEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEF 510

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L D+V     + +    +K++E   +   S    + ADE  + Q++ NLLSNA+KFT+ 
Sbjct: 511 LLKDVVARLTRLYEPLCADKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSE 570

Query: 386 GGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG + +++       +   +I + D G GI+  +   +   F Q          G GLGL
Sbjct: 571 GG-ITLSLDVVEQSHRIELHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGL 629

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I + ++    G   + S++ +G +   ++P 
Sbjct: 630 SITRDLVKAMNGTVDLSSEVGKGSQFTIVVPV 661


>gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 785

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + +++AE   +AKS+FL++MSHE+RTP+NA++GF+ ++  +       
Sbjct: 391 IDEQKKAEQELIKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQ----DPK 446

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+  +  S ++LL LIN+ILD S+IEAG+ E  E   +++ ++      +  +A 
Sbjct: 447 PEQMEYLNILKFSAENLLVLINDILDFSKIEAGKIEFEEVDFNVLALLENIRSGVLQKAN 506

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQ 401
           EK I +  K+   +   V  D   + Q++ NL+SNAVKFT   G+V ++  V   + +  
Sbjct: 507 EKGIMLKLKVSNDVNIMVVGDPTRLGQILTNLVSNAVKFT-ESGKVTISAAVSARADKHV 565

Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            I   ++D G GI   ++  +  SF Q +        G GLGL I + ++        + 
Sbjct: 566 TIDFRVEDTGIGIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIHVD 625

Query: 460 SKLREGVEVIAIL 472
           S+   G      L
Sbjct: 626 SEQGNGSAFYFSL 638


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 163/371 (43%), Gaps = 5/371 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R   L   +  G    +  L          L + + ++  IA +I +         +   
Sbjct: 332 RYLTLAPAMVDGEVKAVFELGFLHPVGDHVLALLERSSNTIAAAIRSAEFRTQLRTLLHE 391

Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q   +   +      +  L  + +        L ++N ++     E +  
Sbjct: 392 TQRQTEELQVQGEELRVSNEELEEQSRALKESQARLEQQQVELEQTNSQLEEQAQELERQ 451

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             +LE A        +  E  +  KS FLA+MSHELRTPLN+ L  ++++       L  
Sbjct: 452 KDDLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADENLTA 511

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   I  SG  LLNLIN+ILDLS+IEAG  E+S   +++   V     +    A 
Sbjct: 512 EQVK-FAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQLFDPLAA 570

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +  ++ P + SV   D + + QV+ NLL+NAVKFTA  G+V + V         I
Sbjct: 571 QKGLNLSIEVAPDVPSVIETDPQRLEQVLKNLLANAVKFTAE-GQVSLLVRPAGDAQIAI 629

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIAE +   +  +F Q    I     G GLGL I++ ++   GG+  ++S+  
Sbjct: 630 SVVDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHLQSRPG 689

Query: 464 EGVEVIAILPN 474
            G     I+P 
Sbjct: 690 TGSTFTVIIPK 700


>gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 557

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 13/266 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +            I  ++  +    E +++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 152 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 211

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++          E  ++Y+  +H + + LL L+N+ILDLS+IEAG  E   S + + 
Sbjct: 212 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 267

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGG 387
            ++ +   + +++    N  +    +P L    V  D   + QV+ N +SNA+KFT   G
Sbjct: 268 LLLNDLEQLFRMKI-GSNSPVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTE-G 325

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +    +S  G    + D G GI+  ++  V   F +          G GLGL I ++
Sbjct: 326 SIRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKT 380

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+   GG+    S++ +G      LP
Sbjct: 381 IVNKLGGEIGAESEVGKGSTFWFTLP 406


>gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
          Length = 914

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 170/418 (40%), Gaps = 19/418 (4%)

Query: 63  GTWFTQNPIFPMWSL-ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
           G           W       +  ++  +  +     +   E++     +L   +      
Sbjct: 230 GFLVKWLADDGGWVAQGIYVLMFSHCLIAIQFSRHFLHTRELFPGLDLVLRCTLL----V 285

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            L +++       +  +I  S T+++  +   L+   +            +A        
Sbjct: 286 ALGSMLSGLLLDVQTWSILASITVIVTSTGLLLTGAFVWRRGVRYGVYYTLAWGVLLASF 345

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           + V   SL   L              F+     +      + L  E   ++    E  +R
Sbjct: 346 ILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSR----EAAER 401

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A  EN AKSRFLA MSHE+RTPLN +LG  +++    +    + + + Y+  I  SG  L
Sbjct: 402 AASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQQFYLDTISSSGNSL 457

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           + +IN+ILD +RI +G+  L +    L  ++ E I +   +A EK + +   ++P +   
Sbjct: 458 MAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGVPRR 517

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGE 416
           +  D   ++Q+++NLLSNA+KFT   G V + V         R     + D+G G+ +  
Sbjct: 518 IRGDPTRLKQILMNLLSNALKFT-EHGHVLLEVSSRQTQDGSRRLVFCVSDSGIGMRQEV 576

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  +  SF QG  +      G GLGL I++ ++    G   ++S    G      +P 
Sbjct: 577 LAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPL 634


>gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 657

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I        
Sbjct: 278 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 333

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 334 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 393

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +  N+E+             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 394 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 450

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 451 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 506

Query: 463 REGVEVIAILPNTRVLNFIPE 483
            +G      LP   V   + E
Sbjct: 507 GQGSTFALYLPYQEVPKEVAE 527


>gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 581

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHELRTP+  I G+ E +    +   + E  + ++  I    + L NLIN+
Sbjct: 356 MRRDFVANVSHELRTPVAVIKGYGETLLDGAL-EESPERSRRFVEIIVSHAERLTNLIND 414

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS++EA    L+   + L   +R+  ++++  A+ K I I  +    +  V AD+  
Sbjct: 415 ILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQ 474

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV+LNLL NA+K+T  GG V V       R   +++ D G GI   ++P +   F + 
Sbjct: 475 LEQVLLNLLDNAIKYTPDGGDVTVAARLEQER-VVVAVSDTGIGIPARDLPRIFERFYRV 533

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  + G GLGL I + I+  HGG+  + S+  +G      LP
Sbjct: 534 DEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLP 579


>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1245

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     A+      ++ AEE   AKS FLA+MSHE+RTP+NAI+G S +     +    +
Sbjct: 408 ITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTEL----S 463

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++YI  IH +   LL +IN+ILD S+IEAG+ ++      L D +     ++ ++A+
Sbjct: 464 RKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAR 523

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK +E+   +DP++   +  D+  + Q+++NL++NAVKFT   G + V V       +  
Sbjct: 524 EKGLELLIAMDPAVPDGLIGDDLRLGQILVNLVNNAVKFTDT-GEIVVRVKQVEANDREV 582

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               SI D+G G+ E ++  +  SF Q   +      G GLGL I++ +     G+  + 
Sbjct: 583 MLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVE 642

Query: 460 SKLREGVEVIAI 471
           S    G   +  
Sbjct: 643 STPGVGSTFLFT 654


>gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 643

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 22/291 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------EN 246
             L  S  + L+    +  L+  L  A     + ++  E+                   +
Sbjct: 351 KALLSSIAEQLAIAINQSQLMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAAS 410

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             ++ FLA++SHEL TPL  ++G S  +    +G L     +EY+  IH SG+ LL +IN
Sbjct: 411 RIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELT-PRQREYLQTIHDSGERLLEMIN 469

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWAD 364
           +ILDLS+I+AG+  L+    SL  +    +  L  ++    + +   +   P      AD
Sbjct: 470 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 529

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + Q+I NLL+NA+KFT  GG V +   W         ++D G GI E ++P V   F
Sbjct: 530 PGRIEQIIWNLLTNAIKFTPQGGSVTLRF-WVEDNTVIFQVEDTGIGIPEEKLPLVFEKF 588

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +     +G G+GL + + ++  H G+  + S +  G      +P +
Sbjct: 589 QQVDASYHRPYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIPRS 639


>gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 1002

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/411 (22%), Positives = 165/411 (40%), Gaps = 25/411 (6%)

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW--TLLTLVEP 129
             +   + L                 ++        I L+  +             L+  
Sbjct: 355 LGVAIGLALLAIGTVWFAIVMFDRRALRPANRRA--IRLIESEALNRTLIRTAPAGLMLL 412

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                + +   ++A        +A     +  A   S                    ++ 
Sbjct: 413 SLANGDTMVRNEAAQAYGDTDAAASLGKRIWQAYHRSIAG-----------GRAPRVVTH 461

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
              +  A    TY+  H+ ++  + +         I   +  +    E R+ A++ N AK
Sbjct: 462 ELSVDLAGGGTTYLAAHIVRTRYRGVDVLLCTLTDITARKQMEDKLREAREAADDANKAK 521

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNAI+G  E++E   +        +  +  +  S   LL +IN++L
Sbjct: 522 STFLATMSHEIRTPLNAIVGNLELMERAPL----PAEERRRLQTVMSSSDALLRVINDVL 577

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS++E+ +  L      L  +VR+   +    A  +++ +  +IDP L+     D   +
Sbjct: 578 DLSKVESNQMVLEAVPFDLRAVVRDVAAIFHPLAAARHLALECRIDPQLADGYVGDPTRL 637

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           RQ++ NL+SNA+KFT   G V +    T      RG  + ++D G GIA   +PT+   +
Sbjct: 638 RQIVSNLVSNAIKFTER-GSVTIEARPTGTVGQARGVEVVVRDTGIGIAPESLPTLFDVY 696

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +I     G GLGLP+ + +     G   + S+  +G   I  LP +
Sbjct: 697 VQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVESRPGQGATFIVSLPLS 747


>gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1103

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I + ++ +     +++RAE    +KS FLA+MSHE+RTP+NA++G + ++    +
Sbjct: 562 ESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIRTPMNAVVGMTGLLLETDL 621

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +EY+  I   G  LL +IN ILD S+IE  + EL      L+  + E + M+
Sbjct: 622 KP----EQREYLETIRTGGNTLLAIINNILDYSKIEGEKMELEILPFDLLGCIEESMDMV 677

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              A EK +EI    D  +   +  D+  +RQ+++NLL NA KFT   G + +++  T  
Sbjct: 678 AANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNATKFTEK-GEIVLSLSTTPL 736

Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +  + D G GI++  +  +   F Q   +      G GLGL I++ ++    G
Sbjct: 737 DDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGGTGLGLAISRRLVEMMEG 796

Query: 455 QFLIRSKLREGVEVIAIL 472
           +  + S+   G      +
Sbjct: 797 RIWVESEKGVGSTFHFTI 814


>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1287

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 11/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+    E R+ AE  +  KS FLA+MSHE+RTPLN ++GF++++    +   
Sbjct: 748 RDITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLLMKTNL--- 804

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +ET ++Y+  + +S   L+++IN+ILD S+IEAG+ EL+     L++I      M+  +
Sbjct: 805 -DETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQ 863

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           AQ+K++E+   I   +   VW D   +RQ+++NLLSNAVKFT   G + + +   +    
Sbjct: 864 AQQKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIK-GEIELKIELLNKVSG 922

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S++D G GI       +  +F Q   +      G GLGL I+ S++     + 
Sbjct: 923 LDYTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSLLGLMESRL 982

Query: 457 LIRSKLREGVEVIA 470
            + S+L +G     
Sbjct: 983 QLTSELEKGSTFFF 996


>gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 551

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 136/279 (48%), Gaps = 5/279 (1%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +++   +    + + Q     LIA+L+              E N  KS FL++MSHELR 
Sbjct: 258 LSHAFNRMLRNLTNIQERNRKLIADLDRKVDELARVNMALFESNRLKSEFLSTMSHELRD 317

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN+I+GFSEV+          E  + Y G+I  SGQ L  LIN+IL+L+++EAG+  L 
Sbjct: 318 PLNSIIGFSEVL---IAAENLTEKQQRYAGNIMTSGQRLTALINDILELAKLEAGKMRLH 374

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
               +           ++ +A++KNI++    DP   +   D   + Q+I NLLSNAVKF
Sbjct: 375 PEPFNAAAACEHAAAQIRPQAEKKNIDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKF 434

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GGRV +    T G    +++ D G GIA  E   +   F Q +  +   + G GLGL
Sbjct: 435 TPEGGRVTLKAA-TDGTDLVLTVTDTGVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGL 493

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I + +    GG   + S+L  G      +   R+ +  
Sbjct: 494 SIVRELAKLLGGDVTVHSELGRGSTFTVRI-AARLADEP 531


>gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 769

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 12/294 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDET---------RK 240
           G      +  T I  H  K     L  +A   DL I + ++ K   +           ++
Sbjct: 469 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQSKLEKQALELADLARKYADEKR 528

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE N  KS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 529 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 588

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR  L    + L   + E + ++  RA+ K++E+  +++  +  
Sbjct: 589 LLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIPI 648

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT   GRV V  G  +G    + I D G GI    +  +
Sbjct: 649 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHVAGGSIVLMIADTGIGIPPQSLRRL 706

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    +  +  G GLGL IA+S++  HGG   +RS L  G  V+  LP 
Sbjct: 707 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLPR 760


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1131

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 8/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    +   RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 573 VTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 629

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K ++  I +SG  LL +IN+ILD S+I+AG+ +L ++A  + + V +   +L   A 
Sbjct: 630 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 688

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V     +G    
Sbjct: 689 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIM 748

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I+D G GI   ++ +V   F Q   +     +G GLGL I   ++   GG   + S
Sbjct: 749 ASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 808

Query: 461 KLREGVEVIAILPNT 475
           +  +G      LP  
Sbjct: 809 EWGKGSVFTINLPFA 823


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
           plymuthica]
          Length = 908

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 19/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL+ + I+ L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 176 VFISTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 232

Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        +T +L +    I    ++  + + ++E+     D  +KRA+E    K
Sbjct: 233 HMLKNGINSMAMSLTAYLEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLASMSHELRTPLN ++GF+  +    M      T  +Y+  I RS  +LL +IN++L
Sbjct: 293 SEFLASMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIINDVL 348

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S++EAG+  L     SL + + E I++L   A EK +E+   +   +   V  D   +
Sbjct: 349 DFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRL 408

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425
           +Q+I NLL NA+KFT  G   + V +         + ++  D G GI+E +   +  +F 
Sbjct: 409 QQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELEVQIHDTGIGISERQQSQLFQAFR 468

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +I     G GLGL I Q ++   GG     S+L  G      +
Sbjct: 469 QADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515


>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
            1740]
 gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1555

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 13/250 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS FLA+MSHE+RTP+NAI+G + + +   + PL     ++Y+  I  S   LL LIN
Sbjct: 851  QEKSNFLANMSHEIRTPMNAIIGMTYLAQQTDLTPL----QRDYLQKIEGSANALLGLIN 906

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365
            +ILD S+IEAG+ E+      L  ++     +++L+A EKN+E     D  +  ++  D 
Sbjct: 907  DILDFSKIEAGKLEIECIDFDLHSVIEHVSTLVELKATEKNLEFVVSYDQGMNMNLHGDP 966

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              + Q++ NL +NA+KFT   G V + +           ++D G G++ G+   +  SF 
Sbjct: 967  LRLGQILTNLANNAIKFTHE-GEVGIYITKQELHRYRFEVRDTGIGLSPGQKEKLFRSFS 1025

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            Q   +      G GLGL I++ ++    G+  + S+  +G   I  +        + E  
Sbjct: 1026 QADTSTTRQYGGTGLGLAISKQLVEMMNGRIWVESEEGKGSSFIFEI-------ELNEQE 1078

Query: 486  HESTQYKCYA 495
            +   + K ++
Sbjct: 1079 NAPKESKAFS 1088


>gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 2077

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 135/291 (46%), Gaps = 23/291 (7%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256
               L K+N ++        +  AE+E   +  ++ R+  EE        +  KS FLA+M
Sbjct: 1607 QEELQKTNQELQEKAMLLAEQNAEVERKNTEVEQARQALEEKAKQLALTSKYKSEFLANM 1666

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  ++ +     G L      E+   IH SG  LL+LIN+ILDLS+IE+
Sbjct: 1667 SHELRTPLNSLLILADQLAHNVEGNLT-PKQIEFSKTIHASGNDLLSLINDILDLSKIES 1725

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G   L    +  I++           A+ K++E   ++D  L   +  D + + QVI NL
Sbjct: 1726 GTVTLDIIEMRFIELQDYVRRTFNHVAESKSLEFDVELDSELPRHMLTDSQRLEQVIRNL 1785

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLT 422
            LSNA KFT  GG V +++   +                   S+ D G GI   +   +  
Sbjct: 1786 LSNAFKFTERGG-VTLSIALVTEGWSPDRETLNQARSVIAFSVSDTGIGIPPEKQQIIFE 1844

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +F Q   +      G GLGL I++ I    GG+  + S + +G      LP
Sbjct: 1845 AFQQADGSTSRKYGGTGLGLAISREIARLLGGEIRLASAIGQGSTFTLYLP 1895


>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
 gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
          Length = 651

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A       R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
 gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
          Length = 1285

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 672 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 731

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  + +   S+   V
Sbjct: 732 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGAV 788

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 789 FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 847

Query: 392 TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +               + D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 848 TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 907

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+  +G +    
Sbjct: 908 SKRLVNLMGGDVWVTSEFGQGSKFHFT 934


>gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1022

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 156/280 (55%), Gaps = 10/280 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L    ++ +L A+ +       + ++ A+  N AKS FL++MSHELRTP+NAILGF++++
Sbjct: 524 LGVAVQQAELFAQTQNQAIELQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLM 583

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + +   P     ++ Y+  I+ SG+HLL LIN++L++S+IEAGR  L+E   +L  ++R 
Sbjct: 584 QRDQSLP---AQHQGYMEIINHSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRR 640

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              M QL+A+ K + +  + D ++   +  DE  +RQV++NLLSNA+KFT   G+V + V
Sbjct: 641 LESMFQLKAKSKGLRLRVQRDDTVPQWIRTDEHKLRQVLINLLSNAIKFT-ENGQVTLEV 699

Query: 394 GWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D GPGIA+ +   +  +F Q  +   +  +G GLGL I+Q  + 
Sbjct: 700 SGVRQGKTVNLGFKVADTGPGIAKEDRNELFQAFKQTKLGQNT-YEGTGLGLKISQKFVQ 758

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             GG+  I S+L +G      +    +   IP+    + Q
Sbjct: 759 LMGGEITITSELGQGSCFKFQI-QVELTESIPDTPASNFQ 797


>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
          Length = 919

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 25/360 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LLI++ I+ L ++ L   V     P+   ++T   +    LD  + G     L
Sbjct: 172 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     + M    + T  +Y+  I RS  +LL +IN
Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVMKTPLSATQIDYLHTIERSANNLLTIIN 341

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EAG+  L      L + + E   +L   A +K +E+   +   +   V  D 
Sbjct: 342 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDP 401

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422
             ++QV+ NLL NA+KFT  G   + + +   + +   + ++  D G GI+E +   +  
Sbjct: 402 MRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDTGIGISERQQSQLFQ 461

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   +I     G GLGL I Q ++   GG     S+  +G      +      N  P
Sbjct: 462 AFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAPP 521


>gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 614

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 2/232 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++ +F+A++SHELRTPL  I  ++E +    +     E  + ++G I    + ++
Sbjct: 377 EKLEQSRRQFVANVSHELRTPLTTIKSYAEALNDGALDER--ELSERFVGVIRNETERMI 434

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++ +  L     ++ +++ E       + ++K+I     +D  L S W
Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ NL+SNA+K+T  GG + ++          IS+KD G GI + ++  +  
Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFD 554

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  HGG   ++S+L +G  V   LP 
Sbjct: 555 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLPV 606


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1252

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 145/290 (50%), Gaps = 12/290 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHE 259
           L +   ++     E ++    LE+     +  +       ++ E     KS FLA+MSHE
Sbjct: 542 LRQQQEELKVSNEELEEQTRALEMRNKELELAKNDIEQKTEQLELSGKYKSEFLANMSHE 601

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S+ +       L+ E   E    I++SG  LL LINE+LDLS+IE+G+ 
Sbjct: 602 LRTPLNSLLILSKDLADNKKKNLD-EDQVESANIIYKSGHDLLVLINEVLDLSKIESGKM 660

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            ++   + L   V++ I   +L+A +K +++       L   +  D + + Q++ NL+SN
Sbjct: 661 SVNLERVVLRTFVKDLISGFKLQATKKKLDLDLIYYEDLPEKIRTDPQRLDQILKNLISN 720

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT   GR+ + V   +      S+ D+G GI E +   +  +F Q   +      G 
Sbjct: 721 ALKFTER-GRIQLEVKRQNSDKILFSVIDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGT 779

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486
           GLGL I++ +    GG+  ++SK+ +G     +LP    R    IP++  
Sbjct: 780 GLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLLPIEGKRNETSIPKEET 829


>gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 496

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 157/358 (43%), Gaps = 15/358 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + +        + +    +    IA  I+ L          +    V+++L    
Sbjct: 149 LLWAAIPV--RDKDATQSVVFIHTLLQPIAERINVLYTASFYILGGVLLLAVILSLFLSR 206

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +S  +L ++      T   +   +           +  + E   L A L        E 
Sbjct: 207 SLSRPLLQMNQTAQAITRGDYSRSVP----------VRSKDEIGLLAASLNSLSQEIQEK 256

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               E  +  +  F+A++SHELRTPL  I G++E +          E  ++Y+ ++    
Sbjct: 257 ITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEALLDGF--AETEEERQQYLNNVLEES 314

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q L  L+N++LDL  +E+G+  L +  + L  ++ +   + +    +K + +    +   
Sbjct: 315 QRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAEEVW 374

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +V+AD   + QV +NL+ NA++ T  GG V ++    + +  ++++KD+GPGI+  ++P
Sbjct: 375 EAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETDK-VFVTVKDSGPGISSKDLP 433

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F +   A     +G GLGL I ++I+  HGG   + S+   G  +   LP  R
Sbjct: 434 LIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLPVFR 491


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 12/313 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             +  +     +         +   +     + L  Q E D+   +L  A    ++  + 
Sbjct: 370 GRLTHVFARAEVIWESGVAVKMIGTVLDVTEQKLREQ-ELDEGKLKLRTALEEREKALQC 428

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE+ NLAKS FLA+MSHE+RTPLNAI+  S +I    +          Y+  I  +G+ L
Sbjct: 429 AEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQTPLTS----KQSNYLEKIESAGRTL 484

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L +IN+ILD S+IEAG   L   A  L D++     +   R ++K++++   + PS  + 
Sbjct: 485 LGVINDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQ 544

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGE 416
           +  D   +  V++NL +NA+KFT   G V + V     R Q+     S++D G GI+  +
Sbjct: 545 MMGDPMRLGAVLINLTNNAIKFT-EHGEVVIRVDAKQQREQHYLLHFSVQDTGIGISAEQ 603

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +  SF Q   +I     G GLGL I++ ++   GG   ++S + +G      +P   
Sbjct: 604 QKRLFQSFSQADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPLQA 663

Query: 477 VLNFIPEDNHEST 489
           V    P++   +T
Sbjct: 664 V-EIKPDEVPSAT 675


>gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 841

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1068

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 140/257 (54%), Gaps = 14/257 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    + ++ A+  N AKS FLASMSHELRTPLNAILGF++V+   +    
Sbjct: 579 RDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLGRNSY--- 635

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  K  +  I RSG+HLL+LIN+IL++S+IEAGR   +E +  L  ++     ML+LR
Sbjct: 636 LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDSLENMLRLR 695

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393
           A+ K +++       +   +  DE  +RQV++NLL NA+KFT  GG V + V        
Sbjct: 696 AEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGNAIKFTEQGG-VTLRVKTGGMMPS 754

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             +        I+D G GIA  EI  +  +FGQ      S  QG GLGLPI+Q  +   G
Sbjct: 755 SLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESGRNS-HQGTGLGLPISQKFVELMG 813

Query: 454 GQFLIRSKLREGVEVIA 470
           G+  + S L  G     
Sbjct: 814 GKIGVNSILGRGSIFTF 830


>gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 917

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          +    + I    TLL        +   +    + T ++A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+      +    L  + +        +     +  + I
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +    +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN+ILGF+ ++
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNSILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K++E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 651

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A       R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1322

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 9/251 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + R +AEE N AKS FLA+MSHE+RTPLN ++GF E+++   +         EY+  
Sbjct: 699 ELKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHTPLDS----EQAEYLST 754

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S   LL ++N+ILDLS+IE+G  ++  S ++L   +   +     +A  K + ++  
Sbjct: 755 IKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYAKASAKGVRLYSY 814

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
           IDP + S +  D   + QV+ NLL+NAVKFT  GG + V V   +         I+++D 
Sbjct: 815 IDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVEDT 874

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +G+I +V   F Q   ++     G GLGL I+++++        ++S+  +G + 
Sbjct: 875 GVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKSEKGKGSKF 934

Query: 469 IAILPNTRVLN 479
              L   + ++
Sbjct: 935 YFELVLKKTIS 945


>gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 142/309 (45%), Gaps = 14/309 (4%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           + +  +  +      A            +  V +     E+  + A L  A   ++  R 
Sbjct: 538 TPYAAEFRVGARWLYARGRTLSGADGQPQRMVALHLDITERKAVEAALRTATRDAEAART 597

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++       + NE  +  +  I  SG  
Sbjct: 598 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDG--DAIQNEDRRR-LELIQSSGAA 654

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N+ILD S+IEAG   L      L+ IV   + +++  A    + I  +IDP+L +
Sbjct: 655 LLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAIEARIDPALPT 714

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---------GRGQYISIKDNGP 410
            V  D   +RQV+LNLL+NAVKFT   G V V V             G     S+ D G 
Sbjct: 715 FVVGDAGRLRQVLLNLLNNAVKFTPE-GSVTVIVEREDAGGAPDGRPGDTVRFSVVDTGI 773

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I++ ++   GG+  + S+   G     
Sbjct: 774 GIAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESREGAGSTFWF 833

Query: 471 ILPNTRVLN 479
            L   R   
Sbjct: 834 RLVLPRAEQ 842


>gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine
           kinase A, N-terminal:Bacterial sensor protein,
           C-terminal:Hist [Brucella melitensis biovar Abortus
           2308]
 gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
          Length = 783

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARAH 781


>gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 783

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781


>gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 765

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 18/352 (5%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +      L  +     V      V  +L    I        + A  LA   +    +   
Sbjct: 1   MTAQAGGLRAWSALATVAALTVAVGASLQWSDIQGPWRALTASASALAVVFALCATVAAQ 60

Query: 207 LFKSNVKIL-----SCQAEKDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSH 258
                 + L       +  ++ L  EL+     +      ++ AE   LAK  FLA+MSH
Sbjct: 61  RSARTQQGLVQRLGEAELARERLQQELQRHGELEQELLRAKQAAEAATLAKGEFLATMSH 120

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA +
Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            EL  +  +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ 
Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAESRQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIG 236

Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G + + +               ++D G GIA  +   +  SF Q   +   
Sbjct: 237 NAIKFTER-GSIDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              G GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVIGDLQQST 347


>gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
 gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
          Length = 769

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 487 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 545

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 546 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 605

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 606 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 664

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 665 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 723

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 724 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 767


>gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 637

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I        
Sbjct: 258 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 314 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +  N+E+             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 374 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 431 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 486

Query: 463 REGVEVIAILPNTRVLNFIPE 483
            +G      LP   V   + E
Sbjct: 487 GQGSTFALYLPYQEVPKEVAE 507


>gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1319

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE+ N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 708 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 767

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 768 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 824

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 825 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 883

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 884 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 943

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 944 SKRLVNLMGGDVWVTSEYGHGSTFHFT 970


>gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 985

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 186/488 (38%), Gaps = 27/488 (5%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
           G LI+   DH        +   R      V      S ++ +      +I          
Sbjct: 264 GKLIAKALDHAREPSGEHVTAHRVGARFVVSDRMPESDLVLMGTFSWRSIVAAIAVPAGA 323

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
              +   L   A             ++        + L+  +                  
Sbjct: 324 T--AGTALVAIALLWLAIMLFDRRALRPANRRA--MRLIESEALNRTLI---------RA 370

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
            P  + +   A     +S   +  +    +       +  A    A        ++    
Sbjct: 371 APTGIMLLSLADGETMVSNDTMREYEQAASEPPLGKRIWQAYRDSARGPGAPRVMTHELA 430

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +  A    TY+  ++ ++  + +         +   +  +    E R+ AE+ N AKS F
Sbjct: 431 VELADHGSTYLAANVVRTRYRGVDVLLCTLLDVTARKRTELKLREAREAAEDANRAKSTF 490

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLNAI+G  E++   ++ P      +  +  I  S   LL +IN++LDLS
Sbjct: 491 LATMSHEIRTPLNAIIGNLELMARASLPPSE----RRRLKTIASSSDALLRVINDVLDLS 546

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           + E+ +  L      L D++R+   + +  A  K++ +  ++   L+     D   +RQ+
Sbjct: 547 KAESNQMALECIPFDLRDLLRDVAAIFRPVADAKHLTLDCRMAADLADGYLGDPTRLRQL 606

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGS 428
           + NL+ NA+KFT  GG  +   V   +   +   I+++D G GI E  +P +   + Q  
Sbjct: 607 VSNLVGNAIKFTKRGGVTIDARVATDAAGARRVAIAVRDTGIGIPEDALPNLFDVYMQAD 666

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT------RVLNFIP 482
            +I     G GLGLP+   I     G+  + S++ EG   +A LP        R     P
Sbjct: 667 PSIYRRFGGTGLGLPLCGRIARLMHGELTVESRVDEGTTFVAALPLPEAPAGWRDAFAEP 726

Query: 483 EDNHESTQ 490
           +   +S Q
Sbjct: 727 DAAPDSEQ 734


>gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 456

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298
           +R E     +S F+A++SHELRTPL +I GF E +     G ++N   ++ ++  I    
Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 275

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  LIN+IL LS IE  +    +  I L + + + + ++   A+ KNI + + ++ + 
Sbjct: 276 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 335

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  ++    Q+++NL+ N +K+T  GG V V+     G    I+++DNG GI++  IP
Sbjct: 336 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIITVEDNGIGISKENIP 394

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F +   +      G GLGL I + I+ +  G+  + S++  G + I   
Sbjct: 395 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448


>gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 7/239 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R++ E     ++ F+A++SHELRTPL +I GF E +    +        + ++  I   
Sbjct: 222 ERRKLE---RMRTEFVANVSHELRTPLTSINGFVETLLDGAI--EEPIIARNFLEIISAE 276

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L N+I+++L LSR+E  R +L++  + L +++   I M + RA EKNI+I  +I P 
Sbjct: 277 GKRLANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPK 336

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V  D+  + QV++NL+ NA+K+T  GG VH++V + +     +++ D G GI    I
Sbjct: 337 LPLVPGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKF-NEHEVTVTVSDTGIGIPIESI 395

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           P V   F +   A      G GLGL I + IM  HGG+  + S    G +    LP   
Sbjct: 396 PRVFERFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDS-SGSQFSFSLPLKE 453


>gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587]
 gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587]
          Length = 984

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 32/279 (11%)

Query: 210  SNVKILSCQAEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            S V +   QA+  +   +            +E R  AE  + AKS FLA+MSHE+RTP+N
Sbjct: 944  SQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMN 1003

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            A++G + ++    +    N   ++++  I  SG  LL +IN+ILD S+IE+G+ EL    
Sbjct: 1004 AVIGMTGLLLDMNL----NPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQP 1059

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384
              L   + E + +L  RA EK +E+   +DP+   V   D   +RQV++NLLSNAVKFT 
Sbjct: 1060 FKLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTN 1119

Query: 385  IGGRVH--------------VTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVL 421
             G  +               ++    +               ++KD G GI    +  + 
Sbjct: 1120 QGEVIVSVTSSLIQDSAQSLISSEEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLF 1179

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +F Q   +      G GLGL I+Q +    GG+  + S
Sbjct: 1180 KAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1218


>gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 770

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 163/282 (57%), Gaps = 9/282 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSD------ETRKRAEEENLAKSRF 252
                  L  +  ++++  A+       LE  A+ L++      E R +AE+ N AKS F
Sbjct: 474 MKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEERNKAEDANRAKSEF 533

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAI+GFSE++E    GPL +E Y EY  DI  SG +LL++IN+ILD+S
Sbjct: 534 LANMSHELRTPLNAIIGFSEIMESGMFGPLGSEKYAEYCTDIKGSGTYLLDVINDILDMS 593

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IEAGR +L    ++L DI+ + + +  +   EKNI +     P+L ++  D + ++Q++
Sbjct: 594 KIEAGRMQLEVEDLALDDIIADALRVTAVNGDEKNIAMTMAAAPNL-AIKGDRRALKQIL 652

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNLLSNAVKFT  GG + V     +G    I+I+D G GIA+  +  +   F Q      
Sbjct: 653 LNLLSNAVKFTPEGGNIAVKA-RINGAAAVIAIEDTGIGIAKDALARIGRPFEQVESQFT 711

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +G GLGL IA+S++  HGG   IRS    G  VI  LP 
Sbjct: 712 KTHKGSGLGLAIAKSLVELHGGAMRIRSVEGRGTTVIVRLPV 753


>gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
 gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
          Length = 791

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  L++ L  +AL   +L   V     P+   +     +    L+I + G      
Sbjct: 184 ITTSIILLILCLGGTALFAHILVRKV---TQPLGGMVRVVEQIRQGQLNIRVTG---AMP 237

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +      +   + E    I            +LE+        +KRA+E  
Sbjct: 238 GELAALQNGINTVAESLSKYKDEMQLHIDQATSDLQITMEQLEIQNVELTLAKKRAQEAV 297

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+ FLA+MSHELRTPLN ++GF+  +    +         EY+  I RS  +LL +IN
Sbjct: 298 KIKTEFLANMSHELRTPLNGVIGFTRQMLKTPITS----QQAEYLYVIERSANNLLKIIN 353

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADE 365
           +ILD SR+E+ +  L +    L D V E I +L   A EKN+ +  +ID  L ++   D 
Sbjct: 354 DILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEKNLPLQHRIDDKLPNLMIGDP 413

Query: 366 KGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
             ++Q++ NL+ NA+KFT  G  +  V +         I  +I D G GI     P +  
Sbjct: 414 IRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQIDFTITDTGIGIKPEYRPILFQ 473

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++    G+    S+  +G      L
Sbjct: 474 AFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEPAKGTVFYFDL 523


>gi|91776115|ref|YP_545871.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91710102|gb|ABE50030.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 1146

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 183/349 (52%), Gaps = 10/349 (2%)

Query: 144 TLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
            LL+A++++ LS  F L Y      F          +   ++   +    ++  ++++  
Sbjct: 586 LLLMAVTLAFLSALFGLIYFHESLTFTGEKEALLPELRLGYLKVFAALAFVSGIIAWWIV 645

Query: 203 ITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           +T    +   +  + Q       I   +   +     R+ AE+ N AKSR++  +SHELR
Sbjct: 646 LTSESRRVAQEESNRQTNLLQREIVLHKQTDAELQRARQVAEQANQAKSRYITGISHELR 705

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+ILG++++++     P   E  ++ I  I RSG+HLL+LI   LD++RIE+G+   
Sbjct: 706 TPLNSILGYAQLLDN---DPSIPENRRQSIRVIRRSGEHLLSLIEGTLDIARIESGKLTF 762

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
               +   + +++ + M +L+A+ K I+   ++   L   V  D+K + Q+++N+L NAV
Sbjct: 763 DLRLVRFPEFIQQLVSMFELQARNKGIDFKYELRGELPKVVRIDQKRLSQILINILGNAV 822

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG V   + + +    +ISI+D GPGIA  EI  V   F +GS A KS   G GL
Sbjct: 823 KFTRHGG-VSFKLRY-AREMLHISIEDTGPGIAPEEIEKVFEPFARGSAAAKSNIGGTGL 880

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GL I++ +    GGQ  +RS L +G +    L  ++V   +PE+   ++
Sbjct: 881 GLTISKMLTELMGGQLTVRSTLGQGSQFNIRLFLSQV--RVPEEIENAS 927


>gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 887

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L+ +      I   +  +     TR++AE  N AKS F+A+MSHE+RTPLN ++GFS ++
Sbjct: 337 LTGRIIVLRNITSRKQIEYDLIATREKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLL 396

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
              T+    ++    YI  ++ S + LL LIN+ILDLS+IEAG+ EL    ISL ++  E
Sbjct: 397 MKTTL----DDVQFHYINTVNNSAKQLLGLINDILDLSKIEAGKLELYNEMISLQELAEE 452

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            I M    A  KN+E+   I  SL     AD   ++Q+++NLL NAVKFT  GG + + +
Sbjct: 453 VIDMTAFTAHSKNLELLLDIPSSLPESALADPVCLKQILINLLGNAVKFT-SGGEIELKI 511

Query: 394 GWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                           S++D G GI+      +  +F Q  ++      G GLGL I+  
Sbjct: 512 ETVPSDNDPDYLVFIFSVRDTGIGISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNK 571

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++   G    + S   +G      L
Sbjct: 572 LLLLMGSCLQLESSPGQGSRFFFSL 596


>gi|296810904|ref|XP_002845790.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
 gi|238843178|gb|EEQ32840.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
          Length = 1309

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 683 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 742

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 743 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 799

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 800 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 858

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 859 KHVPPPPAEGEPEREVCAEDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 918

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 919 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 952


>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 841

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 130/259 (50%), Gaps = 8/259 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +      I +++  +    E   RAE  N AKS FLA+MSHE+RTP+N ++G ++++   
Sbjct: 302 RVGLRVDITQIKEDQQRLKEATIRAEAANRAKSAFLANMSHEIRTPMNGVVGMADLLRET 361

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +    N+  K Y   I  SG+ LL +IN+ILD S+IEA +  L+     L   + + ++
Sbjct: 362 EL----NDEQKLYADTIRSSGEALLVIINDILDYSKIEAEKLVLNPEPFDLERAIHDVVM 417

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +LQ  A++K+I +    D  L      D   +RQ++ NL+ NAVKFT  G  +   VG  
Sbjct: 418 LLQPTARDKDITLLVDYDMFLPTHFVGDPGRVRQILTNLVGNAVKFTVQGYVLVRVVGVM 477

Query: 397 SGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              G    +I+++D G GI   ++  V   F Q         +G GLGL I + ++   G
Sbjct: 478 EDGGSTAVHITVEDTGIGIPADKVEHVFGEFNQVEDERNRKFEGTGLGLAITRRLVELMG 537

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+  + S+   G      +
Sbjct: 538 GEVWVESEPGRGSFFGLRI 556


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 6/239 (2%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R + EE      KS F+A++SHELRTP+  + G+SE I    +     E   + I  I+ 
Sbjct: 356 RDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVT--TEEERIDMIRVIYD 413

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
             Q +  L+ ++LDL+R+E+G   L +  + L+ ++          A+EK++++  + D 
Sbjct: 414 ESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETDF 473

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
              + +  DE  + QV+ NL+ NA++ T   G V V++         I + D G GI + 
Sbjct: 474 SDETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSM-INEQNYAKIQVSDTGQGIPQD 532

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           ++P V   F +   A   ++ G GLGL I ++I+  H G+  + S  ++G      LP 
Sbjct: 533 DLPYVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTFYLPL 591


>gi|317150360|ref|XP_001823967.2| histidine kinase J7 [Aspergillus oryzae RIB40]
          Length = 1304

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 689 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 748

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 749 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 805

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 806 FNALKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKL 864

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 865 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 924

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 925 SKRLVNLMGGDVWVTSEYGHGSTFHFT 951


>gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 614

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 12/331 (3%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L N ++    F++F  ++VA+    I++  ++        +  +         +      
Sbjct: 288 LMNSVIRKIFFIAFSSLIVAVLVAFILNRKIVVPIKKLKNSAEIFGHGKYDERVSLKTGD 347

Query: 214 ILSCQAE-----KDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLN 265
            L   AE      D++    +  K  +DE +      +E +  KS  L+ +SHELRTPL 
Sbjct: 348 ELEELAESFNKMADEISRADKKLKKDADELKNSYDELKEVDNLKSELLSIVSHELRTPLT 407

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I G+ ++++ ET G L N+   E+I  I  +   L  LI+ +LDL ++E    +   + 
Sbjct: 408 SIRGYVDLLKDETAGKL-NDKQHEFILIISENSDRLKRLIDNMLDLVKVENEVLDFKFNK 466

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +++ + V E I  L+  A  KNI + + +D     +  D+  + QV+ NL+ NA+KF+  
Sbjct: 467 LNIKNTVGEIISSLKYFADSKNIILLEDVDE--VYIKGDKSKINQVLANLIENAIKFSKN 524

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
             +V V +G+      ++ I D GPGI +  +  +   F Q   + K    G GLGL + 
Sbjct: 525 QTKVTV-IGFEDKENLHLEITDQGPGIPKENLEKIFEKFYQIDSSSKREIGGSGLGLAVC 583

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           + I+ +HGG   + SK+ +G  V  +LP  +
Sbjct: 584 KKIVESHGGSIWVESKVGKGTSVHILLPIAK 614


>gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1199

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + + +   ++ +L     +    +     T  +     + +    +   A+  F   +  
Sbjct: 579 VLVEVMRTAHPLLVTRRGMRLTGLTWPGRTPEVWLGVPIRVRQEVLGVMAVMHFA-DSGR 637

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             K    +L   AE+  L  E           ++ A+  N AKSRFLASMSHE+RTP+NA
Sbjct: 638 YGKKEADLLLSVAEQLALGVERRRNLDALRAAKEEADRANQAKSRFLASMSHEIRTPMNA 697

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG ++V     + P      ++Y+  +  S +HLL ++N+ILD S+IEA + EL     
Sbjct: 698 ILGLTDVTLRTELTP----EQRDYLETVQDSARHLLGILNDILDFSKIEARQMELEVVDY 753

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L ++ R  +  L + A+ K + +   I P +   V  D   +RQ+++NL+ NAVKFTA 
Sbjct: 754 DLHELARSVVKTLGVSARTKGLWLSLDITPGVPRHVRGDPGKVRQILVNLVGNAVKFTAA 813

Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG V + +              +++ D G GI    +  +  SF Q   +      G GL
Sbjct: 814 GG-VSLRLAHAEAHPDTPPHLELAVADTGIGIEPSLLSAIFESFRQADNSTARRYGGTGL 872

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I++ +    GG   + S    G   +  +P  
Sbjct: 873 GLAISREMAQLMGGDITVESVPGNGSRFVLSIPFE 907


>gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 582

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TP+ +I GF+E +    M   +    + ++  I +  + 
Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+LDLS+IE   ++L    + +  ++ E   + + +A EK I++  +    L  
Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   M+Q++LNLL+NA+ +T   GRV V    T  +   I +KD G GI E EIP +
Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETE-KEVLIHVKDTGIGIEEKEIPRI 525

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + SK+  G       P 
Sbjct: 526 FERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F+A++SHELRTPL +I GF E +    +   N E   +++  I    +
Sbjct: 222 RRLE---KIRNEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +         L + + + + ++   A+ KNI + + ++    
Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGL 336

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  ++    Q+++NL+ N +K+T  GG V V+     G    I +KDNG GI++  IP 
Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVKDNGIGISKENIPR 395

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +      G GLGL I + I+ +  G+  + S++ +G + I   
Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEIGKGTKFIMKF 448


>gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
 gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
          Length = 573

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 14/267 (5%)

Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +   ++L  A    +E        R  AE+ + AKS FLA+MSHE+RTP+N +LG + ++
Sbjct: 21  EQRTSQLRQANLRLNEEVVNHAQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 80

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P+     K Y   I+RSG+ LL ++N++LD S+IEAG  E+      L  +V +
Sbjct: 81  MDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVED 136

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
              ++  RAQEK +     I+  +S  W  D   + QV+ NL+ NA+KFT  G   ++V+
Sbjct: 137 TFQLMNSRAQEKQLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVS 196

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +           + D G GI++ +  T+  +F Q    +     G GLGL I++ I+   
Sbjct: 197 LNPEDESQVLFEVSDTGIGISKKDQKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAM 255

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLN 479
           GG   + S+  EG      +P      
Sbjct: 256 GGVLEVDSEEGEGSRFWFSIPLEESEP 282


>gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
 gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
          Length = 657

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 15/265 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I        
Sbjct: 278 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 333

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +EY+  I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 334 GEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 393

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +  N+E+             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 394 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLK 450

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 451 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 506

Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487
            +G      LP       IP++  E
Sbjct: 507 GQGSVFALYLP----YQEIPKEVVE 527


>gi|327296313|ref|XP_003232851.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
 gi|326465162|gb|EGD90615.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
          Length = 1321

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 870 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 545

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/272 (32%), Positives = 147/272 (54%), Gaps = 10/272 (3%)

Query: 206 HLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + ++  L  +   D   +  +L+ A   ++E  +RA+E N AK++FLA+MSHE+RTP
Sbjct: 129 RHHRDHLDELVQERTNDIARINEKLKSAIIKANELARRADEANQAKTQFLANMSHEIRTP 188

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N ++GF+E++E   +    +E  ++++  I RSG+ LL LIN++LD S+IEAG + L+E
Sbjct: 189 MNGVIGFTEMLEETNL----DEAQRDFVATIKRSGESLLTLINDVLDFSKIEAGEFTLNE 244

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
              S   IV E   +++ R  +K ++I   I  ++   V  DE+  RQ+++NL+ NA +F
Sbjct: 245 VDFSPELIVHEVSELIRPRIGKKPVKISSVISGNMPSRVKGDEQRFRQILINLMGNAQRF 304

Query: 383 TAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G   + +++   +     +  SI+D G GIAE ++ T+   F Q          G G
Sbjct: 305 TDSGEIEIQLSIDEETSDQVLVHTSIRDTGIGIAERDLKTIFEPFRQSDGTSTRKYGGTG 364

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           LGL I + +     G     SKL EG      
Sbjct: 365 LGLSICKQLSNMMRGDVWAESKLFEGSTFHFT 396


>gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB]
 gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB]
          Length = 955

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 135/274 (49%), Gaps = 5/274 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I++ +  +    + ++ A+  N +KS FLA+MSHELRTPLNAI+G+SE+++ E  
Sbjct: 413 ESLRDISDRKATEVALQQAKEAADAANRSKSAFLANMSHELRTPLNAIIGYSELLQEEAE 472

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               N  +   +  IH +G+HLL LIN+ILDLS+IEA + EL     S+ +++   + + 
Sbjct: 473 EAGVN-HFISALDRIHSAGKHLLGLINDILDLSKIEASKIELYPETFSVSEMIESIVKIA 531

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
               ++    +  K   +   + AD   +RQ + NLLSNA KFT   G + +TV  T   
Sbjct: 532 DPLVKKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNAAKFT-TSGVITLTVSRTQEA 590

Query: 400 GQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            Q     S+ D G G+   ++  +  +F Q   +      G GLGL I ++     GG  
Sbjct: 591 EQEWMNFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGGTGLGLTITRNFCRLMGGDI 650

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + S+  +G      +P          +   +T 
Sbjct: 651 TVESEYGKGSLFTIRIPAVTAAGPAEAEEMPATD 684


>gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 651

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A       R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
 gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
          Length = 1235

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       +  +              I   +  +    E ++ AE  N+ KS FLA+MSH
Sbjct: 672 WLLSRGRVVEFTADNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSH 731

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G  ++ E   + P      ++Y+     S Q LL +IN+ILD S+IEAG+
Sbjct: 732 EIRTPMNAIIGMLQLAERTELTP----KQRDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
            EL   A  L  ++   + +  L++Q+K +E+      +   +   D   + QV++N+LS
Sbjct: 788 LELERVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 847

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + +       R   I+    ++D G GI++ +  ++  +F Q   +   
Sbjct: 848 NAVKFTQT-GEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTR 906

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I++ +++  GGQ  ++S++  G      +
Sbjct: 907 KYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945


>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1200

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RTP+NAI+G  ++ +  ++ P   
Sbjct: 667 ITRHKSNEVAMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 723

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+     S Q LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 724 -QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQ 782

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +E+      +   +   D   + QV++N+LSNAVKFT   G + +       R   I
Sbjct: 783 QKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 841

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI++ +  ++  +F Q   +      G GLGL I++ +++  GG+  ++
Sbjct: 842 TLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 901

Query: 460 SKLREGVEVIAIL 472
           S++  G      +
Sbjct: 902 SEMGVGSTFSFTI 914


>gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 651

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A       R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1002

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 173/466 (37%), Gaps = 30/466 (6%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLA 81
               +        + +   LF +S  +P      V                  +  + +A
Sbjct: 301 AAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAFTLRSLVAAVGLQAGWYVAVMVA 360

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
                 +L        +   +       ++  +                   P  + +  
Sbjct: 361 ALVLVWALLVLFDRRVLIPDDAR--TRRVVESENLNRTI---------VEAAPSGIALLS 409

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALS 198
            A   + L    +  +    A   S    ++A    S  A      L ++L       + 
Sbjct: 410 LADGAVLLQNDTMRAYDARIAAAPSLAARLLARFDASPGASAWQSDLHVTLPTGGDETVD 469

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +    ++    +L   ++    I   +  +   DE  + A+  N AKS FLA+MSH
Sbjct: 470 LLVNLVRTRYRDADVVLCNFSD----ITSQKNIERKLDEALRAADAANDAKSAFLATMSH 525

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAILG  E+I  E +     +T +E +  +  +   LLNLI++ILDLS+IEAG+
Sbjct: 526 EIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASSVLLNLISDILDLSKIEAGQ 581

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +      L + + +   M +  A  K ++    +D +L+     D   +RQ+  NL+ 
Sbjct: 582 MTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVG 641

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G     V++           I + D G G+ + +   +   F Q   +I   
Sbjct: 642 NAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRR 701

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             G GLGL + + +     G   ++S   EG   +  LP     + 
Sbjct: 702 YGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPLRAATDA 747


>gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 651

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I +  +  D    E E A       R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E             EY      S +HLL +IN+ILD SRIE G  EL     
Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L+++V+   ++ Q  AQ++ + +  +I   L    V  D   +RQ+++NLL NA+KFT 
Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G +H+++ W +     +    ++ D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL IA+++    GG     SK   G      +P 
Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492


>gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 789

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 6/275 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  + +  +     +  ++ L   +    +     ++ A+  N AKS FLA MSH
Sbjct: 276 FLLGISRDITEHKLAEAELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSH 335

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAILG++++++   +    ++     +  I RSG+HLL LIN+ILD+++IEAGR
Sbjct: 336 ELRTPLNAILGYAQILK---LDTTLDQRQINGLTVIQRSGEHLLMLINDILDIAKIEAGR 392

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            EL+ S +SL  +V      ++++A EK +    ++ P L + V  DE  +RQ +LNLLS
Sbjct: 393 MELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVDEIRLRQALLNLLS 452

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA++FT   G V ++V +T        ++D G GI EG +  +   F Q S        G
Sbjct: 453 NAIRFTEQ-GSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFEQVSDERHR-FGG 510

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I++ ++   GG+  + S+   G     +L
Sbjct: 511 TGLGLAISRQLVRLMGGEIHVESRRDIGSTFSIVL 545


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 141/326 (43%), Gaps = 14/326 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P+ V   F    V    QA   + +     AG     ++               IL   
Sbjct: 392 FPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLA 451

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +     E   A+      +  AE  N AKS FLA+MSHE+RTPLN +LG  ++++   
Sbjct: 452 GVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTA 511

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N+  KEY+    +S   L  L+++ILD+SRIEAGR ++ E   ++ +       +
Sbjct: 512 ----PNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKEL 567

Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394
             L A+ K + +       L  +   DE  +RQ++ NL+ NAVKFT   G++ +      
Sbjct: 568 FALEARRKGLVLEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEK-GKIRIDASLLP 626

Query: 395 -----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 +S     I++ D G GI E  I  +   F Q   +     QG GLGL I + ++
Sbjct: 627 LLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLV 686

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475
              GG   I S L EG  V   LP  
Sbjct: 687 NLLGGDIAIDSTLGEGTTVYLSLPLK 712


>gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
 gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
          Length = 917

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 19/380 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + L               ++ LLIA+ +   +   L  +  ++     +  +   
Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPIGQIKQAVAQ 207

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231
           +   ++                + I              Q   D    ++          
Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+
Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYL 323

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S  +LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+ 
Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELV 383

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407
                 +  ++  D   ++Q++ NL+SNA+KFT  G  V    +           IS++D
Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E
Sbjct: 444 TGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503

Query: 468 VIAI--LPNTR-VLNFIPED 484
                 LP TR  +  +P  
Sbjct: 504 FWISLNLPKTRDDVEDLPSA 523


>gi|75908367|ref|YP_322663.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702092|gb|ABA21768.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 937

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 175/395 (44%), Gaps = 28/395 (7%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
           +  +    +V  W+  L       GL W ++ +V    +  +  T  ++  LL   ++  
Sbjct: 322 LRHERHFVQVRPWKDKL-------GLDWLVIVVVPESDFMAQINTNNRTTVLLCLGALII 374

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   +  + +++   V +  ++ AI S ++        L       T       +    
Sbjct: 375 ATAMGVYTSRWIARPVVQLTQASSAIASGNLDQEVTISGLKELSMLATSFNQMAGQLRDS 434

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               +    +L   +    +     ++ A+  N AKS FLA+MSHELRTPLN ILG++++
Sbjct: 435 FAELEKTNQELENRVAERTAEITAAKETADAANRAKSEFLANMSHELRTPLNGILGYAQI 494

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   M    ++   + +  I+  G HLL LIN+ILD+++IEA + EL      L  ++ 
Sbjct: 495 LQ---MDSNTSDEQMQGLNTIYECGSHLLTLINDILDIAKIEAKKLELYPKEFDLRKLLL 551

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               M +++A +K +     ++  + + ++ADEK +RQV++N+LSNA+KFT   G V   
Sbjct: 552 GACEMCRIKADQKELIFKYHLNNRIPANIFADEKRIRQVLINILSNAIKFT-DHGTVTFD 610

Query: 393 VGWTSG---------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           V   +                      I+D G G+ + ++  +   F Q    +    +G
Sbjct: 611 VEVVACTGTKLITNTNQLLPVHQLRFHIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEG 669

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I+  I+   G    + S   +G +    L
Sbjct: 670 TGLGLAISSQILELMGSDLKVESVYGKGTKFWFDL 704


>gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 497

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 178/428 (41%), Gaps = 22/428 (5%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS---------DIKIG 101
              L   + +N G +    P + ++++ T   +        ++  S              
Sbjct: 38  FAMLLTQVTSNAGDYTRSGPPWVLFAVGTGMAFMGLRYNKIRLARSAFFFSIVGTPTISL 97

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            +       +   + + +    +       +T   L +     + +A + +  +++    
Sbjct: 98  FLLPGTTQFMSYSLVLAVIIAGILYSPRAPFTVVALVVVIFLMVGMASATNFTNHYGSIT 157

Query: 162 AVFLSFFPVVVALSTQAIMSM--HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
               +F P  V L   A+ S       ++       +          L  S  ++     
Sbjct: 158 QFITTFTPPSVTLLLAALTSWLATRDLVATVEWAMESHRLAERRAERLRVSEARVARTLL 217

Query: 220 EKD-------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           E +        L ++L+V     +  R  A+E N  K+RFLA+MSHELRTPLNAI+ F++
Sbjct: 218 ELEGAYEMQSRLNSQLQVLNKELEVARTAADEANTLKTRFLANMSHELRTPLNAIINFTQ 277

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +     G L      E    +  + +HLL LIN+ILDLS+IEAGR EL    + L  I 
Sbjct: 278 FLGKPRYGDLT-ARQIELQERVLVNSEHLLGLINDILDLSKIEAGRMELHLELLDLQPIF 336

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
              +       + K + +   ++  +  V  D+  +RQ++LNLLSNA KFT  GG + + 
Sbjct: 337 NGVMATAVGLTKSKGLNLESDVEEEIPPVRGDKVRVRQILLNLLSNAAKFTDSGG-ITLR 395

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMAN 451
             + S     IS+ D G GI   E+P V   F Q   A     +QG GLGLPI++ ++  
Sbjct: 396 A-FESDGMVQISVIDTGAGIPAHELPLVFEEFHQVEQAASAQRQQGTGLGLPISRHLVEL 454

Query: 452 HGGQFLIR 459
            GG     
Sbjct: 455 QGGTMWAE 462


>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1013

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+      R +A E    KS FLA+MSHE+RTP+N ++G + ++    + P   
Sbjct: 461 ITDRKRAEEALALARDQAMEAARLKSEFLATMSHEIRTPMNGVIGMTNLLLESALTP--- 517

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E    +  SG HLL +IN+ILD S+IEAGR  L         ++ + + ++  +A+
Sbjct: 518 -EQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDFDFRGMIDDTLDLIAEQAR 576

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402
           +K +++   ID S+  +V  D   +RQV++NLL NA+KFT  G  V  +TV   +     
Sbjct: 577 QKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDRGEVVLRMTVAQDAQSHVV 636

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +   + D G GI+      +  +F Q   +      G GLGL I + +     G+  + S
Sbjct: 637 LRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGLAICKRLTELMQGEIGMES 696

Query: 461 KLREGVEVIAI 471
              +G      
Sbjct: 697 APGKGSRFWFT 707


>gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
 gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
          Length = 933

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/272 (32%), Positives = 144/272 (52%), Gaps = 9/272 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K     ++   +K + + + E  + +     + A+  N AKS FLA MSH++RTP+NA
Sbjct: 509 VTKVIFANMNINEQKLEEMEQEEQNRKVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNA 568

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S +   +   P   +  K+ +  I+ S +HLL LINEILD+S+IE G+  L+E   
Sbjct: 569 IIGMSSIAASQINNP---QKVKDCLEKINLSSKHLLALINEILDMSKIEKGKIALAEEPF 625

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            L +++ +   M++  A EKN E+   I D   + +  D   +RQV+LNL+SNA+K+T  
Sbjct: 626 CLSEVIEDISAMVRTEAAEKNHELTVIIKDIEHNILIGDAGRIRQVLLNLISNAIKYTLN 685

Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG + +TV   SG          +++DNG G+ E  +  +   F +         QG GL
Sbjct: 686 GGEILLTVQEVSGKISGYGSFVFTVEDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGL 745

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G+ I+Q I+A   G   + S+  +G   +  L
Sbjct: 746 GMSISQKIVAAMQGNIQVESEKGKGSRFVVTL 777


>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 977

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 134/300 (44%), Gaps = 21/300 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMS 257
             L +   +       +D L   + +            E         N AKS FLA+MS
Sbjct: 243 EMLSQIEAQDRELLKSRDTLEDTVAIRTEELQRMVADLEVARDAANAANRAKSEFLANMS 302

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +E++    +G L N   +++   I  SG+ LL +IN+ILD S+IEAG
Sbjct: 303 HEIRTPMNGVLGMTELL----LGTLLNGKQRQFAETIRNSGEALLAIINDILDFSKIEAG 358

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + EL +    + +++ +   +    A +K +E+   I P +   V  D   +RQV+LNL 
Sbjct: 359 KIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPARLRQVVLNLA 418

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNAVKFT   G + ++                ++D G GI+   +  +   F Q   ++ 
Sbjct: 419 SNAVKFTDQ-GEIVISADVAESGQDNILIRFLVRDTGIGISPESLEKIFEGFAQADGSMT 477

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHES 488
               G GLGL I + +    GG   + S    G          LP T     +P   HE+
Sbjct: 478 RRYGGTGLGLTIVRQLAGLMGGTTRVESTPDVGSCFSFTARFDLPATLQQAALPSSAHEA 537


>gi|70989279|ref|XP_749489.1| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           fumigatus Af293]
 gi|66847120|gb|EAL87451.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus Af293]
 gi|159128901|gb|EDP54015.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus A1163]
          Length = 1337

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 726 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 785

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 786 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 842

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 843 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 901

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 902 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 961

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 962 SKRLVNLMGGDVWVTSEYGHGSTFHFT 988


>gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon
           GZfos17A3]
          Length = 424

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 143/268 (53%), Gaps = 6/268 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             + EK  L+ ELE   +   +  +     EE    K+ FL+  SHELRTPL  +    +
Sbjct: 153 RAEDEKRRLMEELETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQ 212

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   MG L+ +  ++ I  + R+   L NLI +ILD+SRIEAGR +LS ++++L D V
Sbjct: 213 MLQEGYMGKLD-KKQEKSIEVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAV 271

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +E I M +  A+ KNIEI  K+   + ++  D + +RQ I NLL+NA+KF+   G+V + 
Sbjct: 272 KEAIKMQEAFAKGKNIEIRAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIE 330

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                G+    SI D G GI++ +   +   F Q   ++     G GLGL I + I+  H
Sbjct: 331 TKRL-GKNVRFSITDYGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAH 389

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480
            G+    S+L +G     ++P  + +  
Sbjct: 390 NGKIWAESELGKGSTFYFVIPTKQKITE 417


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/473 (21%), Positives = 189/473 (39%), Gaps = 29/473 (6%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           + + V L   P         P+K D  +++++L V  +     ++    L       +  
Sbjct: 285 RRQPVALSNLPMRQRRRQNQPAKSDP-QDLVSLLVVPVLVHDELIGTIGLSSTEAHLFTA 343

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW--LLVGQIAIGLCWTLLT 125
           ++         T+     NL L + + +   +   V          V  I   +      
Sbjct: 344 EDIALAQRLSTTIGQALTNLRLNEALQSELNERMRVEEALRQSSARVTSILESIADAFFA 403

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           +        +++ +   A  L+    ++L    +  +       +   L TQA+ S+  +
Sbjct: 404 V----DMEWKFVYVNDEAARLLGQPTTSLIGQSIWDSAADRVGLLYAELYTQAMESLKPI 459

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
                           ++   ++  +  +    A     +     A++   E ++ AE  
Sbjct: 460 RDE-----VYFAPLDVWLAMRIYPWSDGL----AIYIQDVTAAHAAQAALIEAKEAAEHA 510

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
             A+S FLA+MSHE+RTP+N ++G + ++    +    NE  +EY   I  SG+ LL +I
Sbjct: 511 TRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPL----NERQREYAETIRSSGESLLTII 566

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-D 364
           N+ILDLS+IE+GR EL +    + + V   + ++   A  K +++   I   +  +   D
Sbjct: 567 NDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADVPMMLISD 626

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIKDNGPGIAEGEI 417
              +RQ+++NLL NAVKFT   G V + V                I ++D G GI   ++
Sbjct: 627 VTRLRQILVNLLGNAVKFT-EHGEVTLQVSRYPDFDLEADQVHLVIEVRDTGIGIPPDKL 685

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             +  +F Q   +      G GLGL I + +    GG   + S   +G     
Sbjct: 686 DRLFRAFSQVDASTTRTYGGTGLGLVICKRLSEMLGGGISVESAPGQGSTFRV 738


>gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
 gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato K40]
 gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
          Length = 917

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          +    + I    TLL        +   +    + T ++A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+      +    L  + +        +     +  + I
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +    +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K++E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 917

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          +    + I    TLL        +   +    + T ++A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+      +    L  + +        +     +  + I
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +    +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K++E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|83776228|dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae]
          Length = 1134

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G ++
Sbjct: 587 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 646

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +       P      +E +  +H  G  LL +I++ILD+S+IEA   ++     SL   V
Sbjct: 647 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 703

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + +L + A E+++ +   I+ S+   V  D   +RQ+ILNL+ NA+KFT   G++ +
Sbjct: 704 FKALKILAVEASERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQL 762

Query: 392 TVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           T+                S+ D G GI + ++  +   F Q   ++     G GLGL I+
Sbjct: 763 TIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSIS 822

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG   + S +  G      
Sbjct: 823 KKLVNLMGGDIWVTSAVGVGSTFHFT 848


>gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 798

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARAH 796


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    I++ + + + I      A+EKNI +   I  +      
Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISLTEEEFMF 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T+ GG V ++V         I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I ++I+  H G   + S++ +G      +P  R
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTKR 589


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 10/295 (3%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L F +       ++       + E + L  +L+ A + +++    AE  N AKS FLA
Sbjct: 234 GGLLFSSKEAQSAPQALDTYEEVKQETEQLYQQLDQAIAKANQAALEAELANQAKSSFLA 293

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           SMSHE+RTP+NA++G + V+    +    ++  ++Y+  I  SG  LL LIN+ILD S+I
Sbjct: 294 SMSHEIRTPMNAVIGLTGVLLETQI----DDDQRDYLQTIRASGDSLLVLINDILDFSKI 349

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           E+ + EL E  I     V E + +L  +A  K +E+  +    +   +  D   +RQ+++
Sbjct: 350 ESDKMELEERPIDPRCCVEEALELLAEKASSKGLELCYEASEDIPFGILGDATRLRQILV 409

Query: 374 NLLSNAVKFTAIG-GRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NL+ NA+KFT  G   V +    T  R   I   +KD+G GI   +   +  SF Q   +
Sbjct: 410 NLIGNAIKFTEKGQIEVLLKTRETDQRNCVIEFTVKDSGIGIPADKQSRLFKSFSQVDSS 469

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPE 483
                 G GLGL I++ +    GG+  + S    G   I  +  P +  + + P+
Sbjct: 470 TTRKYGGTGLGLAISKKLTELMGGEMRVESSEGSGSSFIFTIVSPVSSPVVYSPD 524


>gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10]
 gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10]
          Length = 1020

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 401 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +V E   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 577 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 637 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1271

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 152/287 (52%), Gaps = 9/287 (3%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            ++T     +  ++   +      D  I  L+ A+  S +  ++AE  N AKS FLA+MSH
Sbjct: 848  WYTIRIRLIPWTDGHYVRLLVAND--ITVLKQAQEASRQAMEQAERANRAKSEFLATMSH 905

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTP+N ++G S+++       L N   +++I  I ++G  LL+LIN+ILDLS+IEAG+
Sbjct: 906  EIRTPMNVVVGMSDILLES----LPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQ 961

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             EL  +  + I ++ + I + Q++A+ K + +   +   +   +  D   +RQ+++NLL 
Sbjct: 962  LELEHAVFNPILLIEDTIAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLG 1021

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            NA+KFT   G V V  G+ + +  Y ++ D+G GI    +  +   F Q    +     G
Sbjct: 1022 NAIKFTEK-GSVEVQAGYANQQFWY-AVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGG 1079

Query: 438  VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             GLGL I +++M   GG    +S L +G      +P     + +P D
Sbjct: 1080 SGLGLAICKNLMELMGGTIETQSTLGQGSRFYCAIPAPIADHLLPSD 1126


>gi|109899844|ref|YP_663099.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702125|gb|ABG42045.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 1498

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 28/344 (8%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS---------NVKI 214
              +   V + +S        +   SL  ++A  +       Y   +            K+
Sbjct: 771  LWNTQGVELPISVLPPPWKTLWAYSLYCLIALLIILNVIWRYRRKRQKELQQLIELEEKV 830

Query: 215  LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                 E     ++LE A   +++ R+ AE+ +  KS FLA MSHE+RTP+N +LG +EV+
Sbjct: 831  AERTKELSHANSQLEQAVVETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVL 890

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                + P      + +   ++RSG+ LL+L+N ILD S++EAG+  L    + L  ++ E
Sbjct: 891  LSSDLKP----KQQHFAQLVYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEE 946

Query: 335  CIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
               +    A  K + I   + P  L  V+ D   +RQ+I NL SNA+KFT   G V+V++
Sbjct: 947  VCDLFSEAAYNKGLNINAILSPEPLPQVYGDPARLRQIIANLTSNAIKFTER-GEVNVSI 1005

Query: 394  GWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
               +             G    ++D G G+A      V   F Q   +      G GLGL
Sbjct: 1006 RRVACHDTEHEGNNKYSGFVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGL 1065

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPED 484
             I + +    GGQ  ++S + EG        LP +      P  
Sbjct: 1066 AICKQLTVLMGGQIGVQSNIGEGSRFSVKIDLPLSDTSLIQPAP 1109


>gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1288

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 143/266 (53%), Gaps = 24/266 (9%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  K AE+ N AKS+FLA+MSHE+RTPLN ++GFS+++    +    N T ++Y+
Sbjct: 650 QKELKEAMKSAEQANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKTPL----NATQRQYL 705

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ SG  L+ +IN+ILD S++EAG+ EL E+  S+ D+  + I ++  +AQ KNIE+ 
Sbjct: 706 NYINESGSSLMQIINDILDFSKVEAGKMELDEAFHSIYDLSDQVINVVMYQAQVKNIELL 765

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIK 406
             +   L + V  DE  ++QV++NLL NAVKFT   G V + V          G    ++
Sbjct: 766 LDVQHGLPAAVLLDEARVKQVLVNLLGNAVKFTEE-GEVELAVRQISRTDKEIGLRFLVR 824

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E +   +  +F Q   +I     G GLGL I+ SI+ + G +  + S++  G 
Sbjct: 825 DTGIGIPEEKKERIFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGSKLYLESEVGWGS 884

Query: 467 EVIAIL--------------PNTRVL 478
                L              P  RVL
Sbjct: 885 TFYFDLVLEYTEELKDEIEVPLKRVL 910


>gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 861

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  ++           ++A+  +  KS FL  +SHELRTPLNAI+GFS V+  E  GPL 
Sbjct: 604 LEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFSTVLIDELDGPLA 663

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E    I+R+G+ LL+LINE+LDL+RIEAG  +L    + L  +V E +  +Q   
Sbjct: 664 -PMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVSEVLDTMQGLL 722

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +   + + Q +   L +V AD   +RQ++ NLLSNAVKFT   G + V+           
Sbjct: 723 RSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTER-GTITVSANLRDEIGPDG 781

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + I+D G GI       +   F Q         +G GLGL I + ++  H G 
Sbjct: 782 NAQSMVVMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRR-RGTGLGLAIVRRLVEAHQGH 840

Query: 456 FLIRSKLREGVEVIAILPNTR 476
             + S   EG      LP  R
Sbjct: 841 IWVESSPNEGSTFSFSLPIAR 861


>gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009]
 gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris
           CGA009]
          Length = 779

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 12/294 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDET---------RK 240
           G      +  T I  H  K     L  +A   DL I + ++ K   +           ++
Sbjct: 479 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQSKLEKQALELADLARKYADEKR 538

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE N  KS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 539 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 598

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR  L    + L   + E + ++  RA+ K++E+  +++  +  
Sbjct: 599 LLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIPI 658

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT   GRV V  G  +G    + I D G GI    +  +
Sbjct: 659 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHLAGGSIVLMIADTGIGIPPQSLRRL 716

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    +  +  G GLGL IA+S++  HGG   +RS L  G  V+  LP 
Sbjct: 717 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLPR 770


>gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 1032

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 7/258 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I      +   D+ ++ AEE N AKS FLA+MSHE+RTPL  ++G  E++   ++     
Sbjct: 440 ITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANTSLSS--- 496

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +I  I  + Q L+ LI +ILD+S+IEA + ++      L+++V++ + + Q  AQ
Sbjct: 497 -QQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLYQGIAQ 555

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +F  IDP++ ++   D   ++Q++ NLLSNA+KFT   G V + +  ++     +
Sbjct: 556 QKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHR-GTVTIELKRSNKNNILL 614

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+  +   +   F Q   +   A  G GLGL I   ++    GQ  ++S+  
Sbjct: 615 RVSDTGVGISPEQQIKLFEPFYQAH-SEIHAYGGTGLGLFICSKLIKLMDGQISLQSETG 673

Query: 464 EGVEVIAILPNTRVLNFI 481
            G   +  LP    +   
Sbjct: 674 VGSSFLVTLPLALDIQQT 691


>gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 798

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +   ++ + E+D +    E+A+  S E ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFSE+I+  T GPL ++ Y+EYI DIH SG  LLN+IN+ILD+S+IEAG + L   
Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L  ++ E + ++ L+A+EKNI +  +I+ ++  ++AD + ++QV++NLLSNAVKFT+
Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V    T G   +++I+D G GI +  +  +   F Q          G GLGL I
Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           ++S+   HGG   IRS  R G  V   +P+    N  P   H++  +
Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 796


>gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory
           domains [Psychromonas ingrahamii 37]
          Length = 1255

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 13/287 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K  +      A     I E + AK      +  AE+ NLAKS+FLA+MSHE+RTP+N 
Sbjct: 581 VSKVLLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEIRTPMNG 640

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G  +V++  ++         + +  I  S   LL++I +ILD S+IEAG+ ++  + +
Sbjct: 641 VIGMVDVLQQSSLKGF----QVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDIEYAPM 696

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT-- 383
           ++ ++V +   ML   A++K +E+    DP++  +   D   +RQ+++NL +NA+KF+  
Sbjct: 697 AVAEVVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAIKFSSG 756

Query: 384 -AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
               GRV V    T      I + DNG G+ E  +  +   F Q  +       G GLG+
Sbjct: 757 SDRPGRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGGTGLGI 816

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-----LNFIPED 484
            IA++++   GG+  ++S L +G      LP   +         PE 
Sbjct: 817 TIARNLVQLMGGEITVQSTLNKGSIFSVHLPLEAITDIDLEQPQPEA 863


>gi|317159482|ref|XP_001827480.2| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           oryzae RIB40]
          Length = 1141

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G ++
Sbjct: 594 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 653

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +       P      +E +  +H  G  LL +I++ILD+S+IEA   ++     SL   V
Sbjct: 654 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 710

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + +L + A E+++ +   I+ S+   V  D   +RQ+ILNL+ NA+KFT   G++ +
Sbjct: 711 FKALKILAVEASERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQL 769

Query: 392 TVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           T+                S+ D G GI + ++  +   F Q   ++     G GLGL I+
Sbjct: 770 TIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSIS 829

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG   + S +  G      
Sbjct: 830 KKLVNLMGGDIWVTSAVGVGSTFHFT 855


>gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 825

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                +  + L                       ++ AE    AKS FLA MSHE+RTP+
Sbjct: 410 REWNCAEEEALRAAGILLGASIRRRELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPM 469

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG   ++    +    +E  ++Y+    ++ ++LL++IN+ILD S+IE+G++++  +
Sbjct: 470 NAILGMCHLLLNTGL----SEQQRDYLCKTRQAARNLLDIINDILDFSKIESGKFDVETA 525

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              L +++     +  +RA EK I +     P +   +  D   + QV++NL+SNAVKFT
Sbjct: 526 PFPLAEMLDGIRNVAGVRAAEKGIRLSVAASPDMPGELVGDALRVSQVLINLVSNAVKFT 585

Query: 384 AIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V V+V               ++D G G++  E+  +   F Q   +I     G G
Sbjct: 586 ER-GEVAVSVSPRHRREDSLLALFEVRDTGIGMSREEVARIFRPFTQTDTSITRRYGGTG 644

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           LGL I + ++   GG+  + S+   G      LP       IP  
Sbjct: 645 LGLVICKELVEMMGGKISVSSEPGRGSIFCFELPFKLPDAAIPPA 689


>gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
          Length = 843

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 140/272 (51%), Gaps = 15/272 (5%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 +   + AE+ + AK+ FL++MSH++RTP+NAI+G + +++ E       E   E
Sbjct: 442 QTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAIIGITTLMKNEL---HQPEKLAE 498

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  +  SGQ LL +IN+ILD+SRIE+G+  L+   I+L   + +   +++ +A ++   
Sbjct: 499 HLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINLPRQISQLESVIRQQAGQRRQT 558

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISI 405
              +      +V  D   ++QV++N+LSNAVK+T  GG + + +   +    Y      +
Sbjct: 559 FTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGHIRLEIDELTHTEHYTKYRFVV 618

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +DNG G++E    T+   F +   +  +  QG GLG+ I +SI+   GG   + S   +G
Sbjct: 619 QDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLGMAITKSIVDLMGGTIHVESTTGKG 678

Query: 466 VEVIAILPNT--------RVLNFIPEDNHEST 489
            +   +L  T        +     PE+   ++
Sbjct: 679 TQFEVVLEFTIDAEADTVQETQVPPEEEENAS 710


>gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 947

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 24/291 (8%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           Y    L +   + +  +        EL  AK  ++   + AE  +  KS FLA+MSHE+R
Sbjct: 552 YWNRKLSREVDERIRSENALRRSEDELRAAKIEAERLAREAEAASRTKSEFLANMSHEIR 611

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NA++G+S+++         +   + Y+  I    + LL LIN+ILDLSRIEAG+  L
Sbjct: 612 TPMNAVIGYSDLLSNTV----TDPQQRNYLDAIRAGSRALLMLINDILDLSRIEAGKMRL 667

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             + +S+  ++ + + +  LRA+++ + +   +   + + +  DE  +RQV+ NL  NA+
Sbjct: 668 DYAPVSMRRMLGDVLHIFDLRARDQGVTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAI 727

Query: 381 KFTAIGGRVHVTVG------------------WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           KFT  GG V V                             I++ D G GIA  +   V  
Sbjct: 728 KFTHEGG-VTVRAKASPLPKQSYPPGTKPGEPEHPRYRLEITVTDTGIGIATDQQERVFD 786

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +F Q          G GLGL I++ +    GG+  ++S L EG     ILP
Sbjct: 787 AFEQQEGQNSRRYGGTGLGLAISRKLALMMGGELTLKSTLDEGSVFKLILP 837


>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65]
 gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
          Length = 938

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I+     K+   + +++AE    AKS FLA+MSHE+RTP+N +LG  +++       
Sbjct: 400 QQDISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRK---SK 456

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N      I   H S + LL +IN+ILD S+IEAG+  L     +L++ + +    L  
Sbjct: 457 GLNRDQLHQINLAHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISESLAF 516

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399
            A +K+I++   I   +  ++  D   +RQVI NL+ NA+KFT  G  ++ ++       
Sbjct: 517 HAHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEKSN 576

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              +S  IKD G GIAE  +  + ++F Q   +      G GLGL IA+ +    GG   
Sbjct: 577 LIKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGGDVT 636

Query: 458 IRSKLREGVEVIAILPNTR 476
           + S    G +    +   R
Sbjct: 637 VSSTPGVGSQFSFHIFIER 655


>gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
 gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395]
 gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
          Length = 1020

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 401 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +V E   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 577 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 637 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|134076372|emb|CAK39626.1| unnamed protein product [Aspergillus niger]
          Length = 1306

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 681 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 740

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 741 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 797

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 798 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 856

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 857 TICKSDREQCAADEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 916

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 917 SKRLVNLMGGDVWVTSEYGHGSTFHFT 943


>gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 847

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 7/232 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K  F++++SHELRTPL++I GF+E++       ++    ++Y+  IH     L  
Sbjct: 613 EADRMKEEFVSTVSHELRTPLSSIYGFTELMLNR---EIDPPKQRKYLTTIHSETGRLTT 669

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N+ LD+ R+E+       +   L+ +  E I           +            + A
Sbjct: 670 LVNDFLDVQRMESSEQRYQMATFDLVQLAAELIDFHDASHTTHELSFEAV---GPIMIDA 726

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + ++Q++ NLLSNA+K++  GG V + +         I+I+D G GI +  +  +   
Sbjct: 727 DAEKIKQLLNNLLSNAIKYSPDGGNVAIRIE-NHDGFAEITIRDQGIGIPQEAMSKLFDK 785

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   +      G GLGL I + I+ +H G   + S +  G       P  
Sbjct: 786 FYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFPIA 837


>gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 1021

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 635 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 690

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 691 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 750

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 751 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 809

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 810 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGK 865

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G +    LP        P +  +
Sbjct: 866 GSKFWFTLPFQPKKELFPSEEQK 888


>gi|302659494|ref|XP_003021437.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
 gi|291185335|gb|EFE40819.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
          Length = 1318

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 696 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 755

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       +E +  +H     LL +I++ILD+S+IEA R  +     ++   V   
Sbjct: 756 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 812

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V + + 
Sbjct: 813 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 871

Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
                                     S++D G GIA+ ++  +  +F Q   +      G
Sbjct: 872 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 931

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ ++   GG   + S+   G      
Sbjct: 932 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 965


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 13/286 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
               +  L   N ++     E ++   +L+  K   +   K+ +  +  KS FLA+MSHE
Sbjct: 347 LQIQSEELQAVNNQLEERTKEAEEKARDLQQTKKELELQTKQLQASSQYKSEFLANMSHE 406

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  SE++       L+ E   E+   I+ +G  LL LIN++LDLS+IEA + 
Sbjct: 407 LRTPLNSILILSEMLLENKNETLSEEEQ-EFAHIIYSAGTDLLGLINDVLDLSKIEAKKL 465

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
           E+    +S+ ++  +        AQ+K I+    +   +  + + DEK ++Q+I N+LSN
Sbjct: 466 EMICGEMSIQELCTQLERHFTPIAQQKQIDFQILLQKPVPDLFYTDEKRLQQIIKNMLSN 525

Query: 379 AVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           A KFT  G  +            V +   S     I+ +D G GI+E +   +  +F Q 
Sbjct: 526 AFKFTEQGSVIMQVEQMQKEQMTVEMEKKSDTWLVITCQDTGIGISEEQQQLIFDAFHQA 585

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             AI     G GLGL I++ ++   GG   + S   +G      +P
Sbjct: 586 DGAIARKYGGTGLGLSISKELVTLLGGSITVHSIQGKGSIFTVYIP 631


>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 918

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/441 (22%), Positives = 179/441 (40%), Gaps = 22/441 (4%)

Query: 53  PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE-VYVWRIW 109
               L  A+     +        + S     +   +  +  +     +            
Sbjct: 218 LSLGLFSASFDGLLFRLLPGYVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPHLDRV 277

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           L    +A  +      LV    W           +L + L+   +    L Y ++     
Sbjct: 278 LRGLLLACVVLLASEPLVGLRAWNVLASLTVMLVSLSLLLAGGHVWRQGLRYGLYYILAW 337

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
              AL    +++           L  +      +T  L   ++ +       + L  E  
Sbjct: 338 --GALLLSFLVTTAASLGFELFGLFGSGVVKVGMTVELVTLSIGLAD---RINALKEEGF 392

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++  +++ R      N AKSRFLA MSHE+RTPLN +LG  +++    +          
Sbjct: 393 RSRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA---- 444

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  SG  L+++IN+ILD +RIE+G+ +L      L +++ + + +   +A+EK + 
Sbjct: 445 CVETIASSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLR 504

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYI-S 404
           +   +D  +   +  D   +RQV+ NLL NA+KFTA  G V + V      +GR + + S
Sbjct: 505 LHLGLDRGVPRRLNGDPTRLRQVLTNLLGNALKFTAE-GHVALRVQRRFDEAGRERLLYS 563

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D+G GI+     T+  SF Q   +      G GLGL I++ ++   GG+  + S+  +
Sbjct: 564 VSDSGIGISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGK 623

Query: 465 GVEVIAILPNTRVLNFIPEDN 485
           G      LP +  L+    D 
Sbjct: 624 GTRFSVDLPLSPALDSGDADE 644


>gi|67531559|ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
 gi|40741632|gb|EAA60822.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
          Length = 1300

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 917

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251
           +   + +    + +   E    I +           +E+     D  RK A E +  KS 
Sbjct: 229 LARGINRMAETLHNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+  I +S  +LL +INEILD 
Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLSTIEKSADNLLGIINEILDF 344

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       + +S+  D   ++Q
Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDTPTSLVGDPLRLKQ 404

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++ NL+SNA+KFT   G + V               IS++D G G++  ++ T+  +F Q
Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++     G GLGL I++ ++   GG+  + S   EG +    L
Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 402

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 12/286 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAE-------EENLA 248
               +  +  + +   +  +     L    E         +  RK+ E       E +  
Sbjct: 114 RLWQVLRNAIRVHQAEMEAELANKRLWESNELLRRKNRELERQRKQIERQNRKLAEASRL 173

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTP+NAI+GFS+++  +   PL      + +  I  + QHLL ++NE+
Sbjct: 174 KSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPL-VPQQLDMVQRIFNNAQHLLTMLNEV 232

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD S+IEAG ++L  +  +L   V      L+  A EK + +   I+     +  D+  +
Sbjct: 233 LDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTLEVNINLEEPMIINDQNSI 292

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQV++NL+SNA+KFT  GG V + V   +     I++KD G GIA   +  +  +F Q +
Sbjct: 293 RQVLVNLISNAIKFTDSGG-VWINVQEQANDQLIIAVKDTGVGIASDHLQEIFEAFRQIN 351

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                   G GLGL I  S++    GQ  + S+L  G       P 
Sbjct: 352 QTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGSIFQVEFPR 397


>gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea
           34H]
 gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 948

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/356 (26%), Positives = 157/356 (44%), Gaps = 19/356 (5%)

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              +  +   I   A  L+   +SA+    L   V     P+   +     +    L+  
Sbjct: 179 HLNFQQQSQFIVAFAFALLGSLLSAIFAIRLIKKV---TKPINSMVQAIERIREGKLESR 235

Query: 189 LAGMLATALSFFTYITYHLFKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           ++G L   L+F       + +S           I     +  + + + E+       +++
Sbjct: 236 VSGQLIGELNFLKNGINAMAQSLDGYQNEMQASIDQATIDLRESLEQFEIQNVELSISKR 295

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +A+E N  KS FLA+MSHELRTPLN ++GF+     + +     E  ++Y+  I RS  +
Sbjct: 296 KAQEANRVKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLTENQRDYLQTIDRSANN 351

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL +IN+ILD S+++AG+        SL + + E + +L   A +KNIE+   +   L  
Sbjct: 352 LLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNIELSINLPQELPD 411

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISI--KDNGPGIAEGE 416
           S+  D   ++Q+I NL+SNA+KFT  G   V +T    S     + +   D G G+   +
Sbjct: 412 SLVGDTMRIKQIITNLVSNAIKFTPQGSVAVDITSEEISQNNIKLKVIVTDTGIGMTTNQ 471

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             T+  +F Q   +I     G GLGL I Q +     G     S+   G       
Sbjct: 472 QRTIFDAFTQADQSITRLYGGTGLGLVICQRLAQEMNGDIGFSSEKNHGSSFWFTF 527


>gi|259482698|tpe|CBF77424.1| TPA: Histidine kinase J7 [Source:UniProtKB/TrEMBL;Acc:Q6WJ24]
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS]
 gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS]
          Length = 612

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 18/264 (6%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           AE+E A++  +   K  E  +  KS FLA+MSHELRTPLN++L  ++++     G L NE
Sbjct: 34  AEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNL-NE 92

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               Y   I  +G  LL LIN+ILDLS++EAG+ E++  A+SL D++          A E
Sbjct: 93  KQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLASE 152

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396
           K +   +++   L   +  D + ++Q++ NLLSNA KFT   G++ +++           
Sbjct: 153 KGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFT-SLGKIVLSIQRVTNIEDESY 211

Query: 397 -------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        IS+ D G GI + +   +  +F Q          G GLGL I++ + 
Sbjct: 212 QLGKMEARENLIAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQLA 271

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
              GG+  + S+   G      LP
Sbjct: 272 RLLGGEITLHSEEGSGTTFTLYLP 295


>gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 893

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 147/296 (49%), Gaps = 12/296 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            L   +  +    +  F Y    L +   + +  +         L  A   ++   K A+
Sbjct: 330 ALVWRITTVAVVVIIIFLYWNRKLSREVAERIRSEEALRKSEERLRAAMKHAEHLAKAAD 389

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKS FLA+MSHE+RTP+NA++G++E++E    G +++   K Y+  I +  + LL 
Sbjct: 390 SANKAKSEFLANMSHEIRTPMNAVIGYTELLE----GLIHDAKQKSYLDAIKKGSRALLT 445

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN+ILDLS++E+G+  +  + +    ++++   +   R  +K +++   +D  L   + 
Sbjct: 446 IINDILDLSKVESGKLRIEYAPLDPHRLLQDVAQIFSARISQKKLDLRIVLDDQLPHSLV 505

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQYIS----IKDNGPGIAEGE 416
            DE  +RQVI NL+ NA+KFT   G + +        G   +I     ++D+G GIA+ +
Sbjct: 506 LDEVRLRQVIFNLVGNAIKFTHE-GYISLCAKASSIPGDDDHIELEIAVEDSGIGIAQDQ 564

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +  +F Q          G GLGL I++ ++    G+  ++S+L +G      L
Sbjct: 565 QARIFNAFEQHEGQSNRQYGGTGLGLAISKKLVEMMNGEIGLKSELGKGSRFEIRL 620


>gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
          Length = 620

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 19/309 (6%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P    +    +   ++  I   G+L      +  +        + +   ++E+      
Sbjct: 330 LPQGSVIYNMPLEVRYLNYIIAGGILLVIAVVYIILH------LIYMYRRESER------ 377

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +    E ++RAEE N  KS FLA+MSHE+RTPLNAI+GF+ +++ E    L +E  
Sbjct: 378 KKQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--DLTDEEK 435

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             +   I+++   LL LIN+IL+LSRIE+GR   +    +L +++ E      L     N
Sbjct: 436 DLFRNTINKNSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPS-N 494

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I   ++   S   +  D     QVI N ++NAVKFT  G  +   V     +  +I ++D
Sbjct: 495 IRFLKEFQESELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIFVED 554

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++E     V   F +         QG GLGL I Q+I     G+  + S+  +G  
Sbjct: 555 TGKGMSEEAQKKVFERFFKADE----FAQGTGLGLSICQTIAERLDGRITLASQEGKGSC 610

Query: 468 VIAILPNTR 476
              I+P   
Sbjct: 611 FTLIIPCRP 619


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I      +   +  ++ AEE N AKS FLA+MSHE+RTPL  I+G  E++E   + P   
Sbjct: 452 ITIQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENTALSP--- 508

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +I  +  + Q L++LI +ILD+S+IEA +  +   +  L+D+++  + + Q  AQ
Sbjct: 509 -KQKHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQGLAQ 567

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +F  IDP++ +V   D   ++Q+  NLLSNA+KFT   G+V V +   +     +
Sbjct: 568 QKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTH-NGKVTVELRNGTNNNIIL 626

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI++ +   +   F Q      +   G GLGL I   ++   GG+  + S L 
Sbjct: 627 FVNDTGVGISQEQQEKLFEPFYQAHSGQHT-YGGTGLGLFICAELVKLMGGEISVTSNLT 685

Query: 464 EGVEVIAILPNT 475
            G      LP  
Sbjct: 686 VGSSFQITLPLE 697


>gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 456

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298
           +R E     +S F+A++SHELRTPL +I GF E +     G ++N   ++ ++  I    
Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 275

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  LIN+IL LS IE  +    +  I L + + + + ++   A+ KNI + + ++ + 
Sbjct: 276 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 335

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  ++    Q+++NL+ N +K+T  GG V V+     G    ++++DNG GI++  IP
Sbjct: 336 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIVTVEDNGIGISKENIP 394

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F +   +      G GLGL I + I+ +  G+  + S++  G + I   
Sbjct: 395 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448


>gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 765

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 2/263 (0%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           N + L         I++ + AK+     R  AEE N  K+ FLA++SHELRTPLN I+GF
Sbjct: 491 NYQGLLATMAILRDISDWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNPIIGF 550

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++     G L NE  K+Y  +I ++G  LL ++N I+D+  I   + +L      +I+
Sbjct: 551 SDILVSGVAGEL-NEKQKKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCFKVIE 609

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++ E   +L   A +K I +   IDP L+ + AD+   R+++ NL+ NA+KFT  GG V 
Sbjct: 610 MIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSGGHVS 669

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS+ D G GIA  +I  +   F Q   +      GVGLGL + +  + 
Sbjct: 670 IHA-IQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVKEYVK 728

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
             GG   + S+L +G      LP
Sbjct: 729 LQGGDIWVDSELGKGSTFTFTLP 751


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1478

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K++FLA+MSHE+RTP+N +LG SE++    +    N    +++  +  SG+HLL +IN+I
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDL----NPRQLDFVKTLQVSGEHLLGVINDI 584

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S++EAG   L    +++   + + + +   +A+ K++E+   +D  +   +  D   
Sbjct: 585 LDFSKLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGR 644

Query: 368 MRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422
           +RQ+  NL+SN++KFT  G   + V+V              +++D G GI   +   +  
Sbjct: 645 LRQICTNLVSNSIKFTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSKLFQ 704

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   +      G GLGL I + ++   GG+  + S+L  G      +   +V     
Sbjct: 705 AFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGEIGVESQLGVGSTFWFTITFGKVPVGTE 764

Query: 483 EDNHE 487
           E+  +
Sbjct: 765 ENESD 769


>gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
          Length = 706

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 21/291 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251
           +   + +    + + Q E    I +           +E+     D  RK A E +  KS 
Sbjct: 24  LASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSE 83

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   + P + +    Y+G I +S  +LL +INEILD 
Sbjct: 84  FLANMSHEIRTPLNGILGFTHLLQKSELSPRHVD----YLGTIEKSADNLLGIINEILDF 139

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       +  +V  D   ++Q
Sbjct: 140 SKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQ 199

Query: 371 VILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NL+SNA+KFT  G  V    V           IS++D G G++  ++  +  +F Q 
Sbjct: 200 ILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFSQA 259

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476
             ++     G GLGL I++ ++   GG+  + S   EG E      LP TR
Sbjct: 260 DNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 310


>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
          Length = 770

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 171/347 (49%), Gaps = 25/347 (7%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
              L++ A+S  ML     L+  P+             ++   ++  +A A +    + +
Sbjct: 157 WTVLAVIAMSLLMLYLVYRLALNPL------------QIVHARMSNAVAGAKTGHFSLPW 204

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +  +    +       +D  AE +  +   +  R++AE  + AKS FLA+MSHE+RTP+N
Sbjct: 205 YSSREFQALNVSVGVLEDSFAERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMN 264

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G +EV+    + P      + Y   I +SG  LL++IN+IL  S+IEAG+ EL+++ 
Sbjct: 265 GVIGMAEVLRETELTP----DQELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQAT 320

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384
            +L  ++ + I++L  +A EK +++  + DP L+  +  D   +RQ++ N++ NAVKFT+
Sbjct: 321 FNLRTVIEDVIMLLAPKAAEKWVQLTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTS 380

Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             G VH+ V   +        IS+ D G GI   ++  +  +F Q   A     +G GLG
Sbjct: 381 R-GSVHIDVTGVARGQLMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLG 439

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF--IPED 484
           L I+  ++    G+  + S   +G        LP +       +PE 
Sbjct: 440 LAISTRLLQMMKGRIHVTSSEGKGSVFTIDISLPTSDRAPVAFLPEQ 486


>gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 917

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          +    + I    TLL        +   +    + T ++A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLHNAQEELQMSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|121710420|ref|XP_001272826.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
 gi|119400976|gb|EAW11400.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
          Length = 1341

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 730 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 789

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 790 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 846

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 847 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 905

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 906 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 965

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 966 SKRLVNLMGGDVWVTSEYGHGSTFHFT 992


>gi|115442698|ref|XP_001218156.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
 gi|114188025|gb|EAU29725.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
          Length = 1101

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 634 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 693

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 694 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 750

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 751 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 809

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 810 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 869

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 870 SKRLVNLMGGDVWVTSEYGHGSTFHFT 896


>gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 556

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +            I  ++  +    E +++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 151 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 210

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++          E  ++Y+  +H + + LL L+N+ILDLS+IEAG  E   S + + 
Sbjct: 211 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 266

Query: 330 DIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++ +   + +++      ++I  +   S   V  D   + QV+ N +SNA+KFT   G 
Sbjct: 267 LLLNDLEQLFRMKIGSNSPVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTE-GS 325

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + +    +S  G    + D G GI+  ++  V   F +          G GLGL I ++I
Sbjct: 326 IRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTI 380

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +   GG+    S++ +G      LP
Sbjct: 381 VNKLGGEIGAESEVGKGSTFWFTLP 405


>gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286]
 gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286]
          Length = 984

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|33466074|gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans]
          Length = 1297

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
 gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
          Length = 1186

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 13/260 (5%)

Query: 222  DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            ++L+   +  +   D+  K   +AE+ N  KS+FLA+MSHE+RTPLN I+G++E++  + 
Sbjct: 784  EELVKTNQKLQESMDKANKMAVKAEKANELKSQFLANMSHEIRTPLNIIMGYTELLAKD- 842

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               L  + YK YI  I  +G  LL+ +N+ILD+S+IEAG  E++   I L  ++     +
Sbjct: 843  ---LEEDNYKRYIKSIRSAGDSLLDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAI 899

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTS 397
               + + K ++   K+D     V  DE   RQ+++NLL NAVKFT  G   + V     S
Sbjct: 900  FADKVKAKGLDFQLKMDNLPPLVKMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVS 959

Query: 398  GRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            G+G       I ++D G GI   +   +  +F Q +        G GLGL I + ++   
Sbjct: 960  GKGNNNIKLRIIVQDTGIGIKAEKQEEIFKAFSQENAESTREFGGTGLGLSITRRLVDMM 1019

Query: 453  GGQFLIRSKLREGVEVIAIL 472
             GQ  ++S   +G       
Sbjct: 1020 DGQISLQSTAGKGSVFKIEF 1039


>gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 557

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 2/299 (0%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            + + L      A+  +      +      +LS  + +  +  +  +  S   E     E
Sbjct: 249 AVPLLLQDQAIGAIMLYAQEPRPIRNHETFLLSSASIQASMAIQNTLLFSELKEKNAALE 308

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N  KS+FLA+++HELRTPL++I+ +  ++    +    +   +E+I  + R  + L +
Sbjct: 309 QANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQFMVRRAEDLSH 368

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++LDLS+IEA R E+   A+ L   + E +  L+  A  K++ +  + DP +  V A
Sbjct: 369 LVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLECDPQVPKVLA 428

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLT 422
           D   +RQ++LNL+SNA+KFT  GG V +       R Q  IS+ D G GI+   +  +  
Sbjct: 429 DSHRLRQIVLNLVSNALKFTEKGG-VTIHCQHMPERAQVLISVHDTGIGISPAALGYIFE 487

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +F Q   +      G GLGL IA+ ++   GG+  + S    G      LP    ++  
Sbjct: 488 AFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLPVAASISPS 546


>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
 gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
          Length = 1085

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 7/247 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE    +  +  ++AE  + AK  FLA+MSHE+RTP+NAI+G  +++E   +       
Sbjct: 677 ELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDTDL----QAR 732

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y+  I  +   LLN++N+ILD+SR+EA + ELS S   L  ++ +   +   RA+EK
Sbjct: 733 QRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEK 792

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-IS 404
            I+++   D +    +  D   + Q++ NLLSNA+KFT   GR+H+ V   +   Q   S
Sbjct: 793 AIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEK-GRIHLQVQSVADGKQLQFS 851

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G G+ E +   +   F Q   +      G GLGL I ++++   GGQ  + S    
Sbjct: 852 VKDTGIGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGL 911

Query: 465 GVEVIAI 471
           G      
Sbjct: 912 GTTFHFT 918


>gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1019

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 12/299 (4%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKSLSD 236
           S ++   S+       +    Y    + +    + + QAE + +   LE          +
Sbjct: 443 SGNIYYYSITLSSIYDVFNERYQVAAILRDISSLKNIQAELEGVNTTLELKVSQRTRELE 502

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A   + AKS F+A++SHE+RTP+N +LG  E+++ + +    +E    Y+   + 
Sbjct: 503 RAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLEMLKEDGL----SEQQHHYLKLANS 558

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S   L+NLIN+ILD S+IEAG+ ++   +  ++ +  + I  L L+ Q K +E+F     
Sbjct: 559 SANSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVCSDMINSLALQGQRKGLEVFLHTHN 618

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGI 412
            +   V  D   ++Q+++NL++NA KFT  G   + +   + +        ++KD G GI
Sbjct: 619 IVDRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGI 678

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           A   I  +   F Q   +      G GLGL I + +    GG   + S+   G    A 
Sbjct: 679 AAENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNISLTSEKGVGSTFTAT 737


>gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1417

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 26/312 (8%)

Query: 203  ITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I   +    + +   +A + D+ A+  E  + +++E    A+E +  KS+FLA+MSHE+R
Sbjct: 787  IIEGVIGLIMDVTELKAREQDIQAQAQEKRQLVANEA--AAKEASRLKSQFLANMSHEIR 844

Query: 262  TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            TP+  ++G SE++    +     E  ++   +I+RS   LL +IN+ILD S++E+GR ++
Sbjct: 845  TPITGVIGMSELLLDVEL----TEEQRDITENIYRSANALLTVINDILDFSKVESGRLDI 900

Query: 322  SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLSN 378
             E   SL  IVR+   ML   A+ K++     I   + +   V  D   +RQ+I NL++N
Sbjct: 901  EEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETDMVVMGDPGRVRQIITNLVTN 960

Query: 379  AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            ++KFT   G V  +V               I+D G GI E     +   F QG  +    
Sbjct: 961  SIKFTNH-GHVKFSVFKEKDTPEITEIKFVIEDTGIGIEEEVRKRLFQPFSQGDASTARK 1019

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-----------LNFIPE 483
              G GLGL I + ++    G+ ++ S L  G      +P  +            ++ IP+
Sbjct: 1020 FGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIPFNKPQGAAQKSSLVQIDPIPD 1079

Query: 484  DNHESTQYKCYA 495
                     C++
Sbjct: 1080 RLQSEMSVSCHS 1091


>gi|94501038|ref|ZP_01307562.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94426785|gb|EAT11769.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 640

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 21/351 (5%)

Query: 159 LPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           L +A+ +    + V AL      +  V  I     +   LS   Y T     ++ ++   
Sbjct: 165 LIHAMLIVVVAMTVCALIAWLSGARLVRPIKKLSDVVDQLSHRVYDTRTEETASGEVGQL 224

Query: 218 QAEKDDLIAELEVAKSL-------SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           Q   + L  EL+ A+ +           R+ +E  N AKS FLA M+HELRTP+N +LG 
Sbjct: 225 QVGVNKLANELQKAEKVQHHYVKDLIRAREASESANKAKSEFLAVMTHELRTPMNGVLGM 284

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            ++++    G   ++   EY+     SG HLL LIN+ILD S+IE GR +L E    L++
Sbjct: 285 LQLLQ----GTQLSKEQNEYVDVAINSGDHLLGLINDILDFSKIEQGRIDLDEQYFDLVE 340

Query: 331 IVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++         AQ+K ++     +  +   V  D+  ++QV+LNL+ NAVKFT   G +
Sbjct: 341 SLKSLCDSFTPIAQKKGLQFNVHFMTHTNLWVKTDQTRLKQVLLNLMGNAVKFTDT-GSI 399

Query: 390 HVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           ++++             I ++D G GI + ++  +  +F Q   +I     G GLGL I+
Sbjct: 400 NLSLQDLSIEDDEVELSIVVQDTGKGINQAQLSRIFDAFQQEDASISRQYGGTGLGLAIS 459

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPEDNHESTQYKCY 494
           + ++   GG+  ++S+   G   I     P   V N   +   ++ + + +
Sbjct: 460 KQLVEKMGGKLEVQSEKDRGSTFICRFCWPIN-VANEQSDVTQDANEQESF 509


>gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis]
          Length = 2362

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 18/295 (6%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLN 265
               ++  +  +A    L AE +   + ++  R  K AEE   AKS FLA++SHELRTPLN
Sbjct: 1897 ENRSMVAVQKRALAKALEAETKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLN 1956

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
             ++G SE++    +    N+   E    I  S   LL +IN+ILD S++EA + +L   A
Sbjct: 1957 GVIGNSELLRDSDL----NKDQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIA 2012

Query: 326  ISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             +  D+VRE +  +    + +  +KN++I Q I+     ++ D   + QV+ NL+ N++K
Sbjct: 2013 FNPEDMVREVVRAVSYSNREKTSKKNVKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLK 2072

Query: 382  FTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            FT   G + +         ++      ++D G GI   ++  +   F Q   +      G
Sbjct: 2073 FT-EDGSITIGARLDKETKEHATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGG 2131

Query: 438  VGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489
             GLGL I +S++     G+  + S+   G            +      +   ++T
Sbjct: 2132 SGLGLSICKSLIETMMKGKIRLESEENVGTTAWFTVTFEKAKPDVAAGDAQTKAT 2186


>gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
          Length = 582

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TP+ +I GF+E +    M   +    + ++  I +  + 
Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+LDLS+IE   ++L    + +  ++ E   + + +A EK I++  +    L  
Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   M+Q++LNLL+NA+ +T   GRV V    T  +   I +KD G GI E EIP +
Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETE-KEVLIHVKDTGIGIEEKEIPRI 525

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + SK+  G       P 
Sbjct: 526 FERFYRVDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 4/253 (1%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                    +  ++    +  K +FLA+ SHELRTPL  I+G SE +             +
Sbjct: 905  RQKTEQEQKVNEQLRRVDALKDQFLANTSHELRTPLQGIIGLSESLIERV----QERDQQ 960

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E +  I  S + L +L+N+ILD S+++    EL+   ++L  +    +  L    Q K  
Sbjct: 961  EDLSMIISSSRRLNSLVNDILDFSKLKNQEIELATKPVNLYALTDVVLRNLAPLVQGKKF 1020

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
             I   +   L + WADE  ++Q++ NL+ NA+KFT  G  V   +   +     IS+KD 
Sbjct: 1021 SIINAVPNDLPAAWADENRLQQILYNLVGNAIKFTETGQIVVNALREKTSDVLTISVKDT 1080

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   +   +   F QG  +I  +  G GLGL +++ ++  HGG+  + S +  G   
Sbjct: 1081 GIGIPADKQEVIFKEFEQGDGSIARSFAGTGLGLSVSKRLVELHGGKMWLESVVGSGSTF 1140

Query: 469  IAILPNTRVLNFI 481
               LP        
Sbjct: 1141 FFTLPLASTEASA 1153


>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 531

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/462 (23%), Positives = 195/462 (42%), Gaps = 29/462 (6%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVAN----IGTWFTQNPIFPMWSLI-TLAVYAANL 87
           +  E+  L +   F V  ++     +         T  + N     W +   L      +
Sbjct: 75  YKHELRMLILSLTFCVVALVEFAHAVSYAGMPDFITPSSPNKASTYWIIARLLLSTGLLV 134

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL---------- 137
           ++  K     I+  ++       L   +++GL   +   +       +            
Sbjct: 135 AVFSKNKVKIIRKSDLI----LALFALLSLGLIVAVALYLPHLPAMYDTSTANQTSVKIA 190

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAIMSMHVLDISLAGMLAT 195
             Y    +L   ++  L    L    F  F  +++ +       +   V D         
Sbjct: 191 LEYAVMIMLGLAAVRLLLKKELNRQDFHLFLALIIGIMSDATFTLYDSVYDTYNLLGHIY 250

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++ F +I   L +  V +L       + I+ L+  + +  ET ++ +E +  K  FLA+
Sbjct: 251 LVASFVFIFKALTEEAVGMLY------EAISTLKSQREMLAETNRQLQETDRIKDEFLAN 304

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SHELR+PL A++ F+E++  E+ G L N+  ++Y+ +I+ SG+ LL +IN  LDLS+I 
Sbjct: 305 TSHELRSPLTAVIAFTELLMDESSGEL-NDLQRDYVHEINDSGRELLGMINGFLDLSKIA 363

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG+  L      + +++ +  + ++     K I +    + +   VWAD     QV+ NL
Sbjct: 364 AGKTFLYREHFKIDELIEDIFLRMRHLFNNKGITLEVARNKNQLPVWADRGKTGQVLTNL 423

Query: 376 LSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LSNA+KFT  GG+V V      SGR   I+++D G GI   +   +   F Q        
Sbjct: 424 LSNALKFTTTGGKVVVESNSGDSGRDVIITVRDTGIGIDIRDQEKIFQPFYQVDGTSTRN 483

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             G+G+GL +A+ ++  HGG   + S+   G      LP   
Sbjct: 484 YGGMGIGLNLAKKLVELHGGTIRVSSQQNAGSIFTFTLPTEE 525


>gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 917

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          +    + I    TLL        +   +    + T ++A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+      +    L  + +        +     +  + I
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +    +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1935

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 138/294 (46%), Gaps = 12/294 (4%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 +S   + S   +   L  EL       +  ++ AE+   AKS FLA+MSHE+RTP
Sbjct: 1517 AVRFLQSLADLASVAMDNVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIRTP 1576

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            +N ILG +E+  +      ++   +EY+    +SG  LL++IN+ILDLS+IEAG+  L +
Sbjct: 1577 MNGILGMNELALMRV----SDSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIALDQ 1632

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
                L D++   +  L L A EK + I   ++      +  D+  +RQV+ NL+SNAVKF
Sbjct: 1633 EPFDLRDVLDSTLKPLSLGADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAVKF 1692

Query: 383  TAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            +   G V VTV                ++ D G GI   ++ ++  SF Q   +      
Sbjct: 1693 SDQ-GVVRVTVSNNGEASSPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKYG 1751

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G GLGL I + ++   GG     S++ +G      +         P+      Q
Sbjct: 1752 GTGLGLTICRQLVELMGGSIWAESEVGKGSTFFFTIECDVAQEVEPKAETGRPQ 1805


>gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 943

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +      +  I + +  +       ++AE  N AKS FLA+MSHELRTPLN ILG +++
Sbjct: 376 SVEQFIAVERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPLNGILGMAQI 435

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           IE        +    + I  +  SG HLL+L+N+ILD S+IE  + EL        D++ 
Sbjct: 436 IESNI----KDPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLPFDFKDVIS 491

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                     ++K +E+      +  +V+  D+  +RQ+I NL+SNAVKFT   G + +T
Sbjct: 492 PIANTYIPICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTHK-GSITLT 550

Query: 393 VGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
              T    S +G  I I+D+G GI E  +  +   F Q   A      G GLGL I + +
Sbjct: 551 FSHTLTAKSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGLGLAIVKQL 610

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVL------NFIPED 484
           +    G   ++S   EG     +LP   V+        IPE 
Sbjct: 611 VDAMQGYISVKSVEGEGTGFTIMLPLETVIKKQIHKEKIPEA 652


>gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 998

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/401 (27%), Positives = 174/401 (43%), Gaps = 32/401 (7%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAI-------GLCWTLLTLVEPGTWTPEYLTIY---KS 142
              S  +  + +      L+GQ A+          W +L  +           +      
Sbjct: 334 YRRSSGEKVQQFRVEKEFLLGQSALVSLFSVPSTDWVVLIAMPSEYSDKAVALVVGRVSK 393

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             L++   I  L  F L  +VF     +   +   A+       + L G        F  
Sbjct: 394 LVLIVVFIICILLYFFLWRSVFSPANALRGEVRKLALEGQSRGRLELEG-----DDEFGR 448

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I Y   K   ++     E        +++ S  +E ++ AE  +  K+ FLASMSHE+RT
Sbjct: 449 IAYWFNKRTDQLSEALMEL-------KLSNSELEEAKQAAESASRTKNVFLASMSHEIRT 501

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G S ++    M    ++    ++G I  S + LL+LIN+ILD ++IEA   EL 
Sbjct: 502 PMNAIIGLSSLLAEMDM----SKEQSNFVGTIRASAESLLSLINDILDYTKIEANELELE 557

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVK 381
           E    L +I+ E   M+ L+A EK +     +D  +   V  D   +RQ++LNL +NA+K
Sbjct: 558 EVPFDLREIMEELTGMVSLQADEKGLGFSCYLDTATEGMVLGDPGRVRQILLNLATNAIK 617

Query: 382 FTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV ++   +  T        S+KD G GI E    ++  SF Q          G
Sbjct: 618 FTIS-GRVDISGACIEETDTHYVLGFSVKDTGIGIPETAFGSLFDSFRQVDSTTTRKYGG 676

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            GLGL I + +    GG+  + SK+  G E   I+   +V 
Sbjct: 677 TGLGLAICKRLCEKMGGEIQVTSKVGLGSEFSFIIRLGKVA 717


>gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2]
 gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2]
          Length = 984

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 155/333 (46%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V     G+G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|304322209|ref|YP_003855852.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301111|gb|ADM10710.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 782

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 153/356 (42%), Gaps = 20/356 (5%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--------ALSFFTYITYH 206
            +  L  A  +     ++A++     +  +    L                +    +   
Sbjct: 158 ISSYLTIATLVFLGACLMAMTLAHWEARAIYSPILRLRTIIQSIRETRDYSARVETVPDK 217

Query: 207 LFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            F   +   +   AE ++    LE         R  A+  N +KS+FLA+MSHELRTPLN
Sbjct: 218 DFGRLIDSFNAMLAEIENRDERLERVVGDLVMARDAADTANKSKSQFLANMSHELRTPLN 277

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGD-------IHRSGQHLLNLINEILDLSRIEAGR 318
           AI+ ++E+I  +      +E   E +         I  +G HLL LIN ILDLS+IEAGR
Sbjct: 278 AIINYAEIIIEDLEDVKGDEASTESLETASSDLAKIKSAGIHLLTLINGILDLSKIEAGR 337

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E+   A  L   +RE    ++  A++   ++  ++D  + ++  D   ++Q ILNLLSN
Sbjct: 338 MEIDAYAFDLKMTLREVADTVRPAAEQNGNQLVMRVDDHVGTIVTDGMKLKQCILNLLSN 397

Query: 379 AVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A KFT  G     +  ++         I + D G G+   +I ++  +F Q   +     
Sbjct: 398 ACKFTKDGTVSTEIR-SISVKDVPSVEIVVADTGIGMDAHQIESLFEAFVQADASTTRQY 456

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G GLGL I + ++   GG   + S+L  G   I I+P         E    S   
Sbjct: 457 GGTGLGLAITKRMVELLGGTIRVESELGTGSRFIIIVPCQHPAAENIEVEDVSADI 512


>gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tabaci]
          Length = 905

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 127 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLTCTATLAVRMSRT 186

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 187 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 246

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 247 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 303

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 304 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 359

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 360 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 419

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   +      G GLGL I++ ++ 
Sbjct: 420 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIE 479

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 480 QMGGEIGVDSTPGEGSEFWISLKLPKAR 507


>gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +S F+A++SHELRTPL AI GF E +    +   +    + ++  I      L  LI
Sbjct: 126 DQMRSEFVANVSHELRTPLTAIKGFVETLLDGAL--EDKLICRRFLTIIEGENNRLTRLI 183

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +++L LS IE+   +L+   + L+  + + + +L  +A+EK + +    +  L  V ADE
Sbjct: 184 DDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPVKADE 243

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV++NL+ NA+K+T+ GG++ + V    G   + SI D G GI +  +P +   F 
Sbjct: 244 DLVGQVLINLIDNAIKYTSPGGKIVIRVKR-GGDQVFTSITDTGTGIPQESLPRLFERFY 302

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   A      G GLGL I + I+ +HGG+  + S+L +G      L
Sbjct: 303 RVDKARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349


>gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
 gi|158449987|gb|EDP26982.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
          Length = 765

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 15/330 (4%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA--EKDDLIAELEV 230
            +    ++    + +  AG+  +   F        F+     L   A  E ++    L+ 
Sbjct: 300 TIGLTTMLMTGFILLLFAGLFYSISRFSIANQKVKFEKRNNELQAMAISEMEEANKNLKK 359

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           AK+++ E  + AE  N AK+ FL++MSH++RTP+NAI+G   +I        + E   EY
Sbjct: 360 AKNIAIEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLIRHN---AGDKEKVIEY 416

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I  S QHLL +IN++LD+S+IEAG+     S  S++D + E   +   +A EKN   
Sbjct: 417 ADKIAISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNTIFHSQANEKNQSF 476

Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYIS 404
                      V  D+  + Q+  NLLSNA+K+T  GG +      +          +  
Sbjct: 477 IITKGNLKHEWVNGDKVHLMQIFSNLLSNAIKYTQEGGIIQFIAEESETNSSTYGKYHFI 536

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + DNG G++     T+  +F +   ++ +  QG GLG+ I ++++ + GG   + S+   
Sbjct: 537 VSDNGMGMSADFKETIFDAFTRAESSVTNKIQGTGLGMAITKNLVESMGGTIEVESEPNR 596

Query: 465 GVEVIAILPNT----RVLNFIPEDNHESTQ 490
           G     IL       RV++   +     T 
Sbjct: 597 GSSFEVILNLKIVENRVVSSTEQIEMHETD 626


>gi|91223693|ref|ZP_01258957.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91191185|gb|EAS77450.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 573

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 24/305 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  +   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  ++++  T+    +E   + +  +  S + LL +I++ILDLS+IE+GR++L+E 
Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
            I+L D V   I   +  A++KN++        +    W D   + Q++ NL+ NA+KFT
Sbjct: 287 WINLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDKQFWIDSTRLSQILFNLIGNAIKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V V+V         ISI D G GI++ +   + T+F QG  +I     G GLGL 
Sbjct: 347 DE-GEVKVSVS-EQDAELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486
           I + ++    G+  ++S    G      +P                  T+ +  +  ++ 
Sbjct: 405 ITKHLVEMMRGKIAVKSDEHVGSTFTISIPVLTRCNQNRPVRIETNQPTKAMELLVVEDT 464

Query: 487 ESTQY 491
           ES Q+
Sbjct: 465 ESNQF 469


>gi|87311982|ref|ZP_01094091.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87285286|gb|EAQ77211.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+  L+     ++  ++E R RA+  N AKS FLA+MSHELR PL AILG +E+++ +  
Sbjct: 132 ERHRLLVRTIASEIEAEEARNRADAANRAKSHFLATMSHELRNPLTAILGMTELLQEDP- 190

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  ++ +  I  +G+HL  L+N+ILDL++IEAGR  +     ++ DI      +L
Sbjct: 191 ---KPEDRQQMLEMIAENGRHLHELLNDILDLAKIEAGRITIELEEANVGDIAASLCNLL 247

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + RA ++ + +  +I   +  +  D   +RQ++LNL+ NA+KF    G + VT+      
Sbjct: 248 RYRAADEGLSLRLEIKTPVPHMNTDPIRIRQILLNLIGNAIKFNNQ-GEILVTIDLEKSD 306

Query: 400 G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I + D G GI    + T+   F Q +  I+  + GVGLGLPI++ I    GG+ 
Sbjct: 307 ETKQVVIDVIDTGIGIPPDRLTTIFEPFVQVAEDIRRRQPGVGLGLPISREIAILLGGEL 366

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNH------ESTQYKCY 494
            + S+   G     ILP        P+         E   ++ +
Sbjct: 367 TVESEFGVGSRFRLILPVNETEGISPQPIKPADLPVEQADWRSF 410


>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 858

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           I+    L + L  ++   L            +    L  + ++     +LE      +  
Sbjct: 279 IIFREALLLILTVLVGYILLVMILQLLRRRSAQEMELQKKEQERKYQTQLEEQNHKLEIA 338

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +     N AK  FL +MSH++RTP+NAI+GF+ +         N E   +Y+  I  S 
Sbjct: 339 LQHEGAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHI---DNREQVLDYLKKISTSS 395

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPS 357
           QHLL+LIN++LD+SRIE+G+ ++ E A+ L D+V +   ++Q     K + +F    D  
Sbjct: 396 QHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSAKRLSLFIDTVDVE 455

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGI 412
              +  D   + Q++LN+LSNA+KFT  GG + + +   +G           IKDNG G+
Sbjct: 456 NEDIITDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRACYEFRIKDNGIGM 515

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +E     +   F +   +  S  QG GLG+ I ++I+   GG   I S+  +G E I  L
Sbjct: 516 SEEFQKHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIESEPGKGSEFIVNL 575


>gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 903

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 164/370 (44%), Gaps = 24/370 (6%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS-----------NFMLPYAVFLSF 167
           + W     +    ++P +  I+ S    IA+                       A    F
Sbjct: 285 IGWVAALGIPFVMYSPGFGFIWASLVTGIAMMFGFYVGVCAWLRGFKPAKYFIMAYLAMF 344

Query: 168 FPVVVA----LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            P + A    L     +  ++  + L G    AL     +   L   N +        ++
Sbjct: 345 LPNMFANMTNLGVLPPIDFNLYLLGLIGTTLDALLLAFAVADKLRLLNNENFELTKNLEE 404

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            +        + ++      + N AKSRFLA+MSHE+RTP+ +I+G+++ I    +G + 
Sbjct: 405 KVFLRTQ---MLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGI---ILGDIE 458

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
              + + +  I ++G H+L +IN+ILD+S+IEA + E+      L   +     +L  + 
Sbjct: 459 PRNHAKAVQVIAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQI 518

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           ++K +E     +  L   +  D   +RQ++LNL +NA+KFT   G + + V +       
Sbjct: 519 RDKGLEFKVLYEFPLPNKIIIDPTRLRQILLNLTNNAMKFT-DYGAITLIVSF-KDEKLI 576

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D+G G+ + +   +  +F Q   +      G GLGL I++++    GG   ++S++
Sbjct: 577 IRVRDSGIGMTKEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEI 636

Query: 463 REGVEVIAIL 472
            +G E I  L
Sbjct: 637 GKGSEFIVTL 646


>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 769

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 18/352 (5%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + +    L  + +   +      +  AL   ++        +++ +LA           +
Sbjct: 1   MTVQAGGLRAWSIAATLAALAAALGAALQRSSLQGPWRAATAVSAVLAVVCGICAAAGAY 60

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSH 258
                   L+ + E+ +L  E    +              ++ AE   LAK  FLA+MSH
Sbjct: 61  RAARAQHALAQRLEESELARERLQQELQRHGELEQELLRAKQAAEAATLAKGEFLATMSH 120

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA +
Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            EL  +  +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ 
Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIG 236

Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + +               ++D G GIA  +   +  SF Q   +   
Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              G GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 936

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + 
Sbjct: 682 VTELKETEQRLIEAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSDLLAES----DDR 737

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y+  +  + + LL LI++ILDLS+IEAG ++     +++  +  E +    ++ +
Sbjct: 738 EERFGYLKIVQENNELLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIK 797

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++       +  + +D+  + QV+ N ++NA+KFT+  G + +           + 
Sbjct: 798 NHQVKLIFDEQSPVYYITSDKNRVIQVLSNFINNALKFTSQ-GTITLGYELLPNHELKLY 856

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GIAE +   +   F +      +  QG GLGL I +S++   GGQ  + SK  E
Sbjct: 857 VCDTGQGIAEEKQKVIFDRFVKL----NTFVQGTGLGLSICKSLVKQMGGQIGVNSKEGE 912

Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488
           G       P +        +N E+
Sbjct: 913 GSCFWFTHPISLTQTEKKRNNPEN 936


>gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ]
 gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter
            lovleyi SZ]
          Length = 1193

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
               +    ++    +         ++E +  +      ++ AE  N AK++FLA++SHE+
Sbjct: 763  VMFSATTHRTVEGKVDSAFAFITDLSEQKRVEQEIRAAKEAAESANRAKTQFLANISHEV 822

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN I+G S ++ +  +     +  ++Y+  +  S Q LL++IN++LDL+RIE+G + 
Sbjct: 823  RTPLNGIMGMSHLLHMTPLA----DEQQDYLRHLDDSAQSLLSVINDLLDLTRIESGGFG 878

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
              ++   L  + R+ + + Q  AQ K + +  ++   +   +      ++QV+ NL+ NA
Sbjct: 879  TEQADFQLDQLARDILRIHQPVAQRKGVLLQLELADGMPGLLRGVPLRLKQVLHNLVGNA 938

Query: 380  VKFTAIGGRV-HVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            VKFT  G  V  ++     G+      ++ D+G G+    I  +   F Q   +I     
Sbjct: 939  VKFTDQGRVVLSISPIIVPGQSLRVRFAVCDSGIGMEPETIKRIFDPFSQADESISRRYG 998

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNH 486
            G GLGL I + +    GG   + S   +G     ILP    L   +P D  
Sbjct: 999  GTGLGLTICRRLTELMGGTIEVESTPGQGSCFTVILPMKTPLGAVVPADAP 1049


>gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 610

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 2/237 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++  F+A++SHELRTPL  I  ++E ++   +          ++  I    + ++
Sbjct: 371 EKLEQSRREFVANVSHELRTPLTTIRSYAEALDDGALDERQLAD--RFVSVIRNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR ++ +  L   A S+ +++ E       +  +K I     ID ++ +VW
Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D  G+ QV+ NL+SNA+K+T  GG + ++          IS++D+G GI + ++  +  
Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLGRIFD 548

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ I+  HGG   + S+L EG  V   LP   +  
Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLPAPDIRE 605


>gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1226

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 10/274 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I EL+   +   + +  AE     K +FLA+MSHE+RTP+N ++G  +++    +   
Sbjct: 689 RDITELKRQSAELVKAKNEAERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL--- 745

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  + Y+  + RS + LLN++N+ILDLS+IEAG+  L E+ ++  +I  + I +   +
Sbjct: 746 -DEEQRSYVKTVKRSSETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQ 804

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A  KN E+   +   L + V AD+  + QV+ NL SNA+KFT   G + V     S    
Sbjct: 805 ANSKNNELTYHLGSDLPTFVIADQTRLLQVLSNLTSNAIKFT-ENGTIRVEASLISKRGK 863

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I +KD+G GI++  I  +  SF Q   + + +  G GLGL I++ + +   G+  
Sbjct: 864 FNRIRIEVKDSGIGISQQNINLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIG 923

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           + S +  G      +          +   E  + 
Sbjct: 924 VDSTVGMGSTFWFTIELKETSISPTQQTTEVAEI 957


>gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 565

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/273 (34%), Positives = 150/273 (54%), Gaps = 1/273 (0%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   + +      + +   D L   +    + ++   ++AEE N  KS FLA+MSHE
Sbjct: 287 IVIVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHE 346

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFS+ + L  MGP+ N  Y EY+  I  SG HLL++IN++LDLS++EAG +
Sbjct: 347 LRTPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHF 406

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           +L+   + L  +  + I ++  +A    +E+  ++D        D   ++QV+ NLL+NA
Sbjct: 407 DLAPERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANA 466

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT  GG V +++G   G   +I + D+G G+   +I  VL  F Q    +     G G
Sbjct: 467 VKFTPAGGHVILSLGRDDGGS-WIKVADSGIGMRPEDIDRVLEPFVQIDSHLSRRNMGTG 525

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGLP+A+  +  HGG   + S+  +G  V   L
Sbjct: 526 LGLPLAKRFIELHGGTLALASQPGQGTVVTIRL 558


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                +     L      +      F  +       + +     + E+  +    E+A+  
Sbjct: 762  ILLIVRPPMWLTWWAISLYIIVGLFMMWGVIRWRSATLVKEKLKLEQVVVQRTYELAQQK 821

Query: 235  SDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +    +AE+    N  +S F + +SHELRTPL  I+  +E +          E  K Y 
Sbjct: 822  EEIA-SQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQY----NQEEPGKRYT 876

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  + Q LL LIN+++D S++E+G+  L  S  SL  ++ E I   +L AQ+KNIE+ 
Sbjct: 877  QTILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLAQQKNIELK 936

Query: 352  QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                        D   + +V+ NL+SNA+KFT   G + V + W S     I++ D G G
Sbjct: 937  LTASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHL-WQSPDEVKITVTDTGIG 995

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            IA  ++P V   F Q   +      G G+GL + + ++  H G   + S+  +G   +  
Sbjct: 996  IAPADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENKGSTFVVK 1055

Query: 472  LPNTRVLNF 480
             P T V   
Sbjct: 1056 FPFTSVSAS 1064


>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1300

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             IAE + A++     R  AE  + AKS FLA+MSHE+RTP+NAILG   +++   +   
Sbjct: 467 HEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTG- 525

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 +Y+  +  S Q LL ++N+ILD S++EAG+ EL  +   L D+++   +++   
Sbjct: 526 ---RQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSA 582

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400
           AQEK+I++   + P +   +  D   ++Q+++NL  NA+KFT  G  V  V +   +  G
Sbjct: 583 AQEKDIDVLFSVAPDVPLELVGDPLRLQQILINLAGNAIKFTETGEVVVSVRLRTLADDG 642

Query: 401 QY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GIA  +   +  +F QG  +      G GLGL I   ++    G   +
Sbjct: 643 AVLDFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMDV 702

Query: 459 RSKLREGVEVIAI 471
            S+  +G      
Sbjct: 703 ESEPGKGSVFRFR 715


>gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 727

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 14/288 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   L ++       Q E           +      ++ AE   LAK  FLA+MSHE+RT
Sbjct: 27  LAQRLEEAERARERLQQELQRHGEL----EQELLRAKQAAEAAMLAKGEFLATMSHEIRT 82

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL 
Sbjct: 83  PLNGIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELE 138

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
            +  +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+K
Sbjct: 139 ITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 198

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V + +               ++D G GIA  +   +  SF Q   +      G
Sbjct: 199 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGG 257

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 258 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 305


>gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39]
 gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39]
          Length = 984

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|166033331|ref|ZP_02236160.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
 gi|166027688|gb|EDR46445.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
          Length = 1077

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 529 KLVKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 584

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + E   E +G I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 585 AIVGLTAIAGANI---ESQERVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 641

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 642 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 701

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 702 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDQRTTRVQGTG 761

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 762 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 794


>gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4]
          Length = 527

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    +   + +T + ++  +      
Sbjct: 289 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAL--EDRDTLEYFLNIMLTESDR 346

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++LDLS++E   ++L  S   L  ++ E ++ML+ +A+EK I++  +  P L +
Sbjct: 347 LQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-T 405

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D    +QV +NL++NA+ +T  GG V V V         I ++DNG GIA  E+P +
Sbjct: 406 LEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKEERD-EITIKVQDNGVGIAASELPRI 464

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              F +   A      G GLGL I + I+  H G+  + S    G   I 
Sbjct: 465 FERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESSEGVGTTFIV 514


>gi|50552025|ref|XP_503487.1| YALI0E03168p [Yarrowia lipolytica]
 gi|49649356|emb|CAG79066.1| YALI0E03168p [Yarrowia lipolytica]
          Length = 1147

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 24/322 (7%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIA 226
             V+        +     ++A  L T +     IT      +      +    E D L  
Sbjct: 421 AQVSDVDGLWKEITTNVNTMAANLTTQVRALVQITAAATDGDFTRFITVEASGEMDALKT 480

Query: 227 ELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++        E        R+ AE  N AKS FLA+MSHE+RTP+N I+G +++     +
Sbjct: 481 KINQMVLNLRESIQRNTAAREAAELANRAKSEFLANMSHEIRTPMNGIIGMTQLTLDTEL 540

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   +E +  +H     LL +I++ILD+S+IEA R  + + A SL   V   +  L
Sbjct: 541 TQY----QREMLSIVHNLANSLLTIIDDILDISKIEANRMTIEKIAFSLRGTVFGALKTL 596

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            ++A EK +++  K+D +    +  D   +RQVILNL+ NA+KFT   G V ++V     
Sbjct: 597 SVKANEKPLDLVYKVDNTFPDNLVGDSFRLRQVILNLVGNAIKFT-ESGEVALSVRKADD 655

Query: 399 R--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +             + D G GI   ++  +  +F Q   +      G GLGL I++ ++ 
Sbjct: 656 QRPGSPDEMMIEFCVSDTGIGIQSDKLDVIFDTFCQADGSTTRKFGGTGLGLSISKRLIN 715

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
             GG   ++S+  +G +    L
Sbjct: 716 LMGGDIWVKSEYGKGSQFFFTL 737


>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
 gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
          Length = 576

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 8/280 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  +     R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++   T+    ++   + +  +  S + LL +I++ILDLS+IE+G ++L+E 
Sbjct: 231 NSVLGMLDILRQSTL----SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
            I L D V   I   +  A  KN+         S    W D   + Q++ NL+ NA+KFT
Sbjct: 287 WIHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V V+V         +SI D G GI+  +   + T+F QG  +I     G GLGL 
Sbjct: 347 DS-GSVSVSVA-EENDEVVVSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482
           I + ++    G+  ++S+  EG +    +P  TR     P
Sbjct: 405 ITKHLVEMMRGEISVKSRENEGSDFTIRIPVLTRYNQSRP 444


>gi|88857621|ref|ZP_01132264.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
 gi|88820818|gb|EAR30630.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
          Length = 927

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 162/394 (41%), Gaps = 24/394 (6%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISALSNFMLPYAVFLSFFPVV------- 171
           W ++ L++           +  A   L++   +  +    L   +      +        
Sbjct: 419 WHVVLLLDRSHIDVLAAKSWLKAMSILMLVTLLVFIFIARLSRWLVAPIELLTQKMQDFK 478

Query: 172 -------VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                    L  ++   +  L      +  +    F  +     K+            +L
Sbjct: 479 PENNAKQSTLIERSWFEVDTLHQQFIELANSLNVNFQALAASNQKNEELNNKLSEFNHEL 538

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+E       ++   AE+ N AKS FLA+MSHE+RTP+N ++G   ++  +   P  N
Sbjct: 539 AIEVERKTFELTQSVHIAEQANKAKSIFLANMSHEIRTPMNGMMGMLSIVLKQ---PSLN 595

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I  S Q L+ ++N+ILD S+IEAG+  + ++ + L  + +E   +  + + 
Sbjct: 596 PDVVDKLQLIQSSAQTLMQILNDILDFSKIEAGQLTIEQAPVDLKAVFKESCDIFLMSSI 655

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + N+E   +   +L   +  D   +RQ+I+NLL+NA KFT   G + V V +        
Sbjct: 656 KPNVEFRLEGIENLPDQLLCDALRLRQIIVNLLTNAGKFTP-CGHIKVLVSYDEE-YLRF 713

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA+ +   +   F Q  ++      G GLGL I   ++    G   ++S+  
Sbjct: 714 SVADTGIGIAKEKQALLFNEFSQADVSTTRKYGGTGLGLAICSRLVTLLEGNIELQSEEG 773

Query: 464 EGVEVIAILPNTRVLNFIPEDN--HESTQYKCYA 495
           +G      LP          D   ++S  +  ++
Sbjct: 774 KGSCFTVSLPMKAPEELKEHDEPLNKSLDFTGHS 807


>gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 965

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 2/275 (0%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   L +   ++    +       ELE   +       +  E    KS+F++++SHEL
Sbjct: 655 ARMIKALEEQEARLECQNSMLARQNRELERRDASLKLQNLQLLEAARLKSQFVSTISHEL 714

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+GFS+++  +  G L +    + +  I  + QHLL LI +++DLS+IEA   E
Sbjct: 715 RTPMNAIIGFSQLLLRQRQGSLTH-QQADIMERIVNNAQHLLTLIKDMIDLSKIEAVCLE 773

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+  ++ L  +++E I   +  A +K++ ++ + +     V  D   +RQ+++NL+SN +
Sbjct: 774 LTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLKNPIVINDSLRLRQILVNLVSNGI 833

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT   GRV V V   S     ++++D G GIAE ++  +   F Q          G GL
Sbjct: 834 KFT-EMGRVEVVVKEISTDWLMLTVRDTGIGIAENDLEHIFEEFQQIDQTTTRKYSGTGL 892

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I +S++    G   + SKL +G       P  
Sbjct: 893 GLAITESLVKLMQGTITVESKLGKGSTFHVKFPRR 927


>gi|119498321|ref|XP_001265918.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
 gi|119414082|gb|EAW24021.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
          Length = 1336

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 725 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 784

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 785 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 841

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 842 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 900

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 901 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 960

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 961 SKRLVNLMGGDVWVTSEYGHGSTFHFT 987


>gi|254457972|ref|ZP_05071399.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085365|gb|EDZ62650.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1040

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           D +L   L     FF + T +  +     ++ + +  + + E+       +E +  A   
Sbjct: 505 DYTLVWQLVGIFIFFIFGTLYWNRKLSVEIAKRKQAQEELFEV---NKKLEEAKDIAVNA 561

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FL++MSHE+RTP+NAILGF+E+++        ++  K +I  I  SGQ LL LI
Sbjct: 562 NKAKSDFLSNMSHEIRTPMNAILGFAELLDKRV----EDKKSKSFIKTIRSSGQTLLYLI 617

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+IL+LS+IE+G+ EL +S +++ +I  E I + +L+A++K +++   I+  +   +  D
Sbjct: 618 NDILNLSKIESGKLELVKSRVNIQNICEETINIFKLQAKQKGLQLQLDINKEMPKAILID 677

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYISIKDNGPGIAEGEIP 418
              + ++++NL+ NA+KFT   G V + V        TS     I ++D+G GI +    
Sbjct: 678 SIRLSEILINLIGNAIKFTEE-GYVKLVVNVDEVYEHTSKVDLTIRVEDSGIGIEKINQD 736

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q          G GLGL I++ +    GG   + S L +G   I     +  +
Sbjct: 737 KIFNIFEQTENQDVKKYGGTGLGLAISRKLSKLMGGSLEVESVLGKGSSFIIEF-KSIDI 795

Query: 479 NFIPEDNH 486
             + ++ H
Sbjct: 796 ASVSDEEH 803


>gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
 gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
          Length = 1234

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/490 (20%), Positives = 188/490 (38%), Gaps = 31/490 (6%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESL-FRVSPILPLFVLLVANI-----GTWF 66
              I      L         F   + TL  ++L FR+SP   +   +   +         
Sbjct: 289 ASDIQAATGLLHNAAALSKRFAERVATLEAQTLSFRLSPSAEIADAVGTLLDELSRVARV 348

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
             + +    +   + V                    +   R  +     + GL       
Sbjct: 349 LPSSVGTQANATPVTVKDQIAGYRAAFARFRQASNALSDARDQVRNEARSAGLLVARFAG 408

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                          +  +   ++I          + F++   V +A   + + +  +  
Sbjct: 409 QARSDALVHNDRGMLATIIAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLRT 468

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL------------------ 228
              +      +   T       ++ ++I   +AE +    ++                  
Sbjct: 469 GIASVERGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTVTLHHQ 528

Query: 229 ----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               E       + R +A+  N AKS F+A++SHELRTPL  IL   E +   T+ P + 
Sbjct: 529 TEVLEAQAIELIQARNQADSANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLVPAD- 587

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             ++  I    R+   L+N +N+ILD S+ EAG++E+  + + L + V        + A+
Sbjct: 588 --WRVQIERAQRNALRLMNRVNDILDFSKAEAGKFEVCPTLVDLNNAVGVLAEDAAMVAE 645

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K   +   IDP+L +V+ D +   +++LNL+SNA+KFT  GG VH+ V    G    ++
Sbjct: 646 GKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELA 705

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G GIA  E+P +   F Q   +      G G+GL + + ++   GG+  + S+   
Sbjct: 706 VQDSGIGIAPEELPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVSSEPGR 765

Query: 465 GVEVIAILPN 474
           G      LP 
Sbjct: 766 GSCFFVRLPL 775



 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 14/163 (8%)

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +S+  +V + + M     + + + +  K    L  +  D   +  +++NL+SNA K  
Sbjct: 1080 ETVSVAGLVDDALRMSAGSLERQGVTL-VKRIADLPLLPLDRHRVLLILVNLISNA-KHA 1137

Query: 384  AIG-----GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
              G       V +           IS+ DNG GI    +  +       S    + ++G 
Sbjct: 1138 LEGVADRSPCVTLDACLVDASVLRISVTDNGNGITPEHLARIF------SHGFTTRKEGH 1191

Query: 439  GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNF 480
            G GL          GG+  + S    +G      +P     + 
Sbjct: 1192 GFGLHSCALAAQEMGGRLTVHSDGAGQGATFTLDIPLEAAPDQ 1234


>gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
 gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
          Length = 1068

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +  I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L D+V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 633 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 929

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +++  E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EYI  +  +   LL LI++ILDLS+IEAG +E +     +  +  + +   Q++  
Sbjct: 737 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 796

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +E+     PS  +V +D   + QVI N ++NA+KFT+  G +HV             
Sbjct: 797 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 853

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI++ ++  +   F +      S   G GLGL I +SI+   GG   + S+ R+
Sbjct: 854 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEERK 909

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 910 GSRFWFTIP 918


>gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
 gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
          Length = 874

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 197/433 (45%), Gaps = 13/433 (3%)

Query: 54  LFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
              LL A       +  +    W   T  +Y  +                +         
Sbjct: 449 ALTLLTATGHGITVEARLMSAPWEGGTAMLYVLHRLDAVTDERIRQAELALRQAENAERE 508

Query: 113 G-QIAIGLCWTLLTL----VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              I       ++ +           P       +A  +   +I+ L       A     
Sbjct: 509 LRAILDTATDGVVLIDKAGTILSMNHPAEALFGFNAGDVQGEAITLLLAPESHRAAIDYL 568

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             +        +            +          +   + +         A   D I +
Sbjct: 569 DGLASNGVASVLNDGR------EVIGRVREGGLIPLFMTMGRIGDDPTKFCAVLRD-ITQ 621

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + A+    E +  AE  NLAKS FLA +SHE+RTPLNAI+GFSEV+  E  G + N+ Y
Sbjct: 622 WKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIENQRY 681

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++Y+ DIH SG+HL++LIN++LDLS+IEAG+ +L+ ++++L +IV++C+ ++Q +A  + 
Sbjct: 682 RDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCMAIMQPQANRER 741

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +   +   L  V AD + +RQ++LNL+SN+VKFT  GG+V ++   T      + ++D
Sbjct: 742 IVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLTEQGEVVLRVRD 801

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++E +I   +  F Q + + ++   G GLGLP+ +++   +   F IRS +  G  
Sbjct: 802 TGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASFNIRSAVDVGTI 861

Query: 468 VIAILPNTRVLNF 480
           V    P+TRVL  
Sbjct: 862 VEITFPSTRVLAE 874


>gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 561

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            +  + ++ +L    +        E  +      ++ AE  N  KS FLA+MSHELR+PL
Sbjct: 151 RNWNEQDLALLKIACDTIGSSLSNERYREELISAKEMAERTNAYKSEFLANMSHELRSPL 210

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GFS++IE +       E   EY G I  +G+HLL +I EILDL+RI+ G+  L + 
Sbjct: 211 NCVIGFSDLIEQDVEEKCF-ERIGEYAGLIKAAGKHLLGMITEILDLARIDTGKMRLEKR 269

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L +++     ML+L A+EK + I    DP      ADE+ + QV+ NLLSNA+KF++
Sbjct: 270 EVHLDELLELIASMLKLPAREKRLSIELDCDP--IRFEADERRLHQVLHNLLSNAIKFSS 327

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G R+ V+     G    I + D G GIA   +  +   F Q         +G GLGL I
Sbjct: 328 EGSRIGVSA-QGQGEIVEIVVWDEGRGIAPDWLDRIFEPFEQVESGDSELGEGAGLGLAI 386

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + I+  HGGQ  + S+L  G      LP          +    T  + YA
Sbjct: 387 VKRIVDLHGGQVSVESELGVGSRFSVRLPALAPKPAKENEPALDTASREYA 437


>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1178

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 12/316 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
              + + V       +L               + + ++L   AE+  L  E         
Sbjct: 606 TPEVWLGVPIRVRQEVLGVMAVLHYTDATRYGRKDAELLLSVAEQLALGVERRRTLDALC 665

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             ++ A+  N AKSRFLASMSHE+RTP+NAILG +EV     +    +E  ++YI  +  
Sbjct: 666 AAKEEADRANEAKSRFLASMSHEIRTPMNAILGLTEVTLRTRL----SEEQRDYIDTVRD 721

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S +HLL+++N+ILD S+IEA +  +      L +++R  I  L   A++K + +   ID 
Sbjct: 722 SARHLLDILNDILDFSKIEACQMTVDVVDYDLHELLRRVIKTLGGAARDKGLWLTLDIDV 781

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGP 410
            +   V  D   +RQV++NL+ NAVKFT  GG V V                + + D G 
Sbjct: 782 GVPRNVRGDPGKVRQVLVNLVGNAVKFTEAGG-VTVRAALMMPGAGGLPLLGVEVADTGI 840

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI       V  SF Q   +      G GLGL I++ +    GG   +RS    G     
Sbjct: 841 GIPAEMREAVFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRSTPGGGSLFTF 900

Query: 471 ILPNTRVLNFIPEDNH 486
            +        +PE + 
Sbjct: 901 TV-AFVPGASLPEADT 915


>gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
 gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
          Length = 883

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFNPIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891]
          Length = 886

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 15/343 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-----GMLATALSFFTYITYHLFKSNV 212
            L     L+   +V A+     ++ ++  +             +LS        L +  V
Sbjct: 295 SLGLVSLLTILVMVFAIKLAQRLTTNLKAVLAFLSHDDATSLPSLSKSVRGNDELNQFAV 354

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++     E+      L  AK  +++ +  A     AKS FLA+MSHE+RTPLN ++G +E
Sbjct: 355 EVERLTIERQQAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITE 414

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+    +    N + K+Y+  I  S Q LL+LIN++LD S+IE+G   +S  +  + + +
Sbjct: 415 VLSDTDL----NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESI 470

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +   ++  +A+EK I++   I       V  D+  +RQV++N +SNAVKFT   G V +
Sbjct: 471 YDIASIVAPQAKEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNS-GVVSL 529

Query: 392 TVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +         I     ++D G GI E +   +   F Q   +      G GLGL I+  
Sbjct: 530 QLSSKHVGENIIEMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQ 589

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           ++   G Q  + S   EG      L     +   P    +   
Sbjct: 590 LVELMGSQIELTSIKGEGSRFYFTLTLPIDVYHYPTKEEDKVD 632


>gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
 gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
          Length = 652

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +     +   E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 272 HDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 327

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +     EY+  I ++   LL LIN+ILDLSRIE+G+ E++   + +  ++ E   + +L+
Sbjct: 328 DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLK 387

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             +  I +          +  D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 388 -MKTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIKNTHE-GTITLGLE-VCGEWLK 444

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIA+ ++P +   F +         QG GLGLPI QSI+   GG+  + S++
Sbjct: 445 VYVTDTGCGIAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLGGKISVESEV 500

Query: 463 REGVEVIAILPNTR 476
             G   +  LP  +
Sbjct: 501 GVGSTFVMTLPYRQ 514


>gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 895

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 15/293 (5%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             A    T     L  +N ++ S   E +   A+L++ KS  +E        +  KS FL
Sbjct: 440 LQASGRTTMQAEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFL 499

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHELRTPLN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS+
Sbjct: 500 ANMSHELRTPLNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSK 558

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVI 372
           +EAG+ ++   A ++ D+           A +KN+E   +   ++  + + D K + Q+I
Sbjct: 559 VEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQII 618

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTV 420
            NLLSNA KFT   G V +                       IS+KD G GIA+ +   +
Sbjct: 619 KNLLSNAFKFTEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLI 677

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +F Q   A      G GLGL I +      GG   + S + EG      +P
Sbjct: 678 FEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 730


>gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 856

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 146/255 (57%), Gaps = 9/255 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +    A++ N AKS+FLA+MSHE+RTP+ +ILG++++I  + +    +E  + ++
Sbjct: 444 ERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI----DEDTRSHV 499

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I R+G  LL LIN+ILDLS+IEA R E+ + +++LI ++ + + ++Q+RA EK++EI 
Sbjct: 500 ATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLRIMQVRAAEKDLEIR 559

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKD 407
                 +   + AD K +RQ+++NL+ NAVKFT   G V V V           +  + D
Sbjct: 560 VDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEA-GHVRVAVRAEQIDLRTRVHFDVVD 618

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI++  +  +   F QG  +I     G GLGL I+Q ++A  GG+   RS++ EG  
Sbjct: 619 TGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSRVNEGSC 678

Query: 468 VIAILPNTRVLNFIP 482
               +   +V    P
Sbjct: 679 FSFCIDAGQVDCTSP 693


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + EL++        ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    +
Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  K Y+  I R+ Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +  
Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K +E+   + P++   ++ D   + QV++NL++NA+KFT   G V +++     +    
Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S++D+G G+ + +   +  SF Q   +      G GLGL I + ++   GG   + 
Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250

Query: 460  SKLREGVEVIAI 471
            S+   G      
Sbjct: 1251 SQFGHGSTFYFT 1262


>gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1290

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E   A       R   E  N  K  FLA +SHELR+PLN ILG++++++   +  L  
Sbjct: 899  IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL-- 956

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                + +  I R+ +    LI+++LD+SRI  G+  L+   + L+  +   +  ++L A+
Sbjct: 957  -KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAE 1015

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             K+I I  ++   +  V  D   ++QV+ NLL+NAVKFT  GG++ V++    G   +I 
Sbjct: 1016 SKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERV-GSLAHIQ 1074

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
            ++D G GI+   +P V   F Q          G+GLGL I + ++  HGG   + S    
Sbjct: 1075 VRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGEG 1134

Query: 464  EGVEVIAILPNTRVLN 479
             G      LP   V  
Sbjct: 1135 LGTTFTVKLPLIAVSQ 1150


>gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 370

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/251 (37%), Positives = 138/251 (54%), Gaps = 3/251 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      +  AE  + AKS  LA++SHELRTPL +I+GFS+++     G L
Sbjct: 113 RDITTRKQAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKL 172

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           NN     Y+  IH+SGQ+LL+LIN++LDLS+IE+G+ EL    ISL +I+ + +  L   
Sbjct: 173 NN-NQINYLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPL 231

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A EK + +  KI+P +  V  D   +RQ++ NL+ NA+KFT   G +   V +     Q 
Sbjct: 232 ASEKGLTLDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTN-NGSITTEVDFVDNNYQ- 289

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI E +   +  SF Q   + K    G GLGL + + ++  HGG   + SK 
Sbjct: 290 FSVIDTGIGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKY 349

Query: 463 REGVEVIAILP 473
            EG      +P
Sbjct: 350 GEGSRFTFTIP 360


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE   +  +  F+A++SHELRTP+  + G+SE I  +     + E  KE+   I+ 
Sbjct: 353 RDMTEERKLDKLRDDFIANVSHELRTPVAMLQGYSEAIIDDI--AASEEEKKEFAKIIYD 410

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+NE+LDL+R+EAG +      +S    +          A+EK I++  +   
Sbjct: 411 ETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSD 470

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           S  ++  D   + QV+ NL+ NA++ T+  G V V     +  G Y+ ++DNG GI + +
Sbjct: 471 SDLTLEIDADRIEQVLTNLIDNALRHTSSNGYVKVK-EEEAPGGVYVHVEDNGSGIPDED 529

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P V   F +   A    + G GLGL IA++I+  HGG+  ++SKL EG      LP  
Sbjct: 530 LPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLPKK 588


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1101

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 11/282 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +               I E + A+      + RAE  + AKS FLA+MSHE+RTPL
Sbjct: 651 RAVGRVEEHGEQLILGTLQDITERKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPL 710

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ILG  +++    +G        +Y     +SG+ L  L++++LDLSRIE+G+ ++   
Sbjct: 711 NGILGMLQLMHTTRLGA----EQADYADIAIQSGRRLARLLSDMLDLSRIESGKLDIRHV 766

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L   V++ + +    + +  I +  ++DP+    +  D   ++QV+ NLL N+ KFT
Sbjct: 767 PFQLAAAVQQVVELFLPISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFT 826

Query: 384 AIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            IGG + + V               +I D G GI E ++  +   F Q S  ++ + QG 
Sbjct: 827 RIGG-ITLAVHRLPPPHAPACRVLFTISDTGCGIPEDKLGELFEPFTQASNGMRRSHQGA 885

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GLGL I + ++   GG+  I S+   G      LP T V + 
Sbjct: 886 GLGLSICKRLVHLMGGEITIESEEGAGTTACVSLPFTLVPDT 927


>gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 609

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++  F+A++SHELRTPL  I  ++E +E   +   + +    ++G I      ++
Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++    L +    +++++ +       + ++K+I    ++ P +S+  
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D  G+ QV+ NL+SNA+K+T  GG + +    T      +S+KD G GI + ++  +  
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  HGG   ++S+L +G  V   LP 
Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601


>gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1391

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 18/274 (6%)

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +  L  + E         R++AE  N  K  FLA +SHELRTPLN ILG+ ++++     
Sbjct: 969  RKQLEQQREHLLIQEQTAREQAELANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFE 1028

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            P       E +  I R+ Q  + LI ++LD S+I  G+  L  + + L  I+   +  ++
Sbjct: 1029 P---ARAMEALRTIERNAQLQVQLIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVR 1085

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
            L A+ K I++   +D     VW D   ++QV+ NLLSNA+KFT  GG+V V +    G  
Sbjct: 1086 LAAEAKTIQLQTCLDQHPILVWGDANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSP 1145

Query: 399  ------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                            I + D G GIA   +P V   F Q   A+     G+GLGL I +
Sbjct: 1146 GKRAHPMPVNTSSYAQICVIDTGKGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVK 1205

Query: 447  SIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479
             I+  HGG+    S  L EG      LP  +   
Sbjct: 1206 QIVEMHGGRIWAESPGLGEGATFTVRLPLMKEEQ 1239


>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1197

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 9/264 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A LE   +     R  A   N AKS FLA+MSHE+RTP+NAI+G S +     +      
Sbjct: 458 AALERFAAKLAVARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + YI  +  S   LL LIN+ILD S+IEAG+ ++ +    L +++     ++ LRA E
Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASE 573

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           + +E+   ID  + + +  D   + Q+++NL +NAVKFT  G  ++ + V   +G     
Sbjct: 574 RGLELLIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGDDLVL 633

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D+G G+   +   + + F Q   +      G GLGL I++ +    GG   ++S+
Sbjct: 634 QFSVEDSGIGMTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSE 693

Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485
             +G      +  TRV + + +++
Sbjct: 694 AGKGSCFSFSI-ATRVSHALKQED 716


>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1329

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+ AE    AKS FLA+MSHE+RTP+NAI+G + +I+   +    +E    +I  I  +
Sbjct: 574 AREIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETKL----DERQLGFIERISHA 629

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL +IN ILD S+IEA + +L  + + L DI+ E   + ++R   + IE+   IDP 
Sbjct: 630 ATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALAEVRIAGRPIELIVDIDPE 689

Query: 358 LSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGI 412
           +  V   D   + Q+  NL++NA KFT   G + + +       +      S+ D G G+
Sbjct: 690 IPEVLMGDPLRLSQIFTNLINNATKFT-ESGSITLQIKQEQVIGNNIKLSFSVIDTGIGM 748

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +  +F Q   +I     G GLGL I++S++   GG+  + S+  +G +    +
Sbjct: 749 TTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGELQVESEYGKGSKFFFTI 808


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +         + +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P   
Sbjct: 680 ISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTP--- 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++YIG +H +G  LL +IN+ILD S+IEAG+ +L      L +++     +   +A 
Sbjct: 737 -KQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAH 795

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK +E    + P +   +  D   + Q++ N ++NAVKFT   G + + +      G   
Sbjct: 796 EKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTER-GEIRLNIELIERTGEKL 854

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G G+   +   +   F Q  ++      G GLGL I + ++   GG+  + 
Sbjct: 855 QLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLE 914

Query: 460 SKLREGVEVIAI 471
           S+   G      
Sbjct: 915 SEPGAGSTFYFT 926


>gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 706

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/273 (31%), Positives = 137/273 (50%), Gaps = 3/273 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L +     +  +A      AEL     +      + E+ + AKS+FLA+MSHE RTP
Sbjct: 432 ARLLERVKEGSVHLEARVQAATAELAEQNEMLRRQAIQVEQASAAKSQFLANMSHEFRTP 491

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILG++ ++     G L N   K  +  I  +G+HLL +INEILD++RIEAGR  L+ 
Sbjct: 492 LNAILGYTNMLLQGVSGEL-NPAQKRNLTRIDSNGRHLLEVINEILDITRIEAGRMPLNL 550

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S   + ++++E +  +        + +   + P + +V++D + ++Q++LNLLSNA+KFT
Sbjct: 551 SDFGIPELLQEVMAEMDPIIARSKLTVSAHLGPRVPAVYSDRQKVKQIVLNLLSNALKFT 610

Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G V V   + +      IS+ D G GI       +   F Q   +   A  G GLGL
Sbjct: 611 HE-GSVQVQAEYVAATSTLTISVTDTGIGIDPANQEKIFEDFQQVDSSPTRAYGGTGLGL 669

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + +    GG+  ++S   EG       P  
Sbjct: 670 SICRRLATMLGGRVTLQSTQGEGSTFTLHFPRR 702


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + EL++        ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    +
Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  K Y+  I R+ Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +  
Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K +E+   + P++   ++ D   + QV++NL++NA+KFT   G V +++     +    
Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S++D+G G+ + +   +  SF Q   +      G GLGL I + ++   GG   + 
Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250

Query: 460  SKLREGVEVIAI 471
            S+   G      
Sbjct: 1251 SQFGHGSTFYFT 1262


>gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1101

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 126/253 (49%), Gaps = 9/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +++AEE N AKS FL+SMSHE+RTP+N I+G  E+I    +    ++    Y+  I  S 
Sbjct: 593 KEKAEEANKAKSLFLSSMSHEIRTPINGIIGAIELIPKHNL----SDEISSYLNIIKSSS 648

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL LIN+ILDLS+IE+G  +L       I +++    ++      K +          
Sbjct: 649 EHLLMLINDILDLSKIESGYLKLENIPFEPIKVLKRVRSIIYPTTIPKGLTFSIDYPDRG 708

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAE 414
             V+ D   + QV++NL  NAVKFT   G V V +   S     I    S++D G GI E
Sbjct: 709 ICVYGDPHRLSQVLINLSGNAVKFTEK-GEVEVKMEILSESETEIRLKFSVRDTGIGIPE 767

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +   F Q   +      G GLGL I+Q+++   GG   + SK+ EG      +  
Sbjct: 768 DKMDKLFKPFSQIDDSHTRKFGGTGLGLVISQNLVKMFGGIIKVESKVGEGSIFSFEIDF 827

Query: 475 TRVLNFIPEDNHE 487
            +      ED+ E
Sbjct: 828 KKAEFKRCEDSEE 840


>gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 510

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 210/476 (44%), Gaps = 8/476 (1%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D  G  + S+   + E+    +  L R++    + ++ V    ++ T   +     + T+
Sbjct: 10  DRTGESWLSRTSGNGEVRGQELAILRRLALASSVALVAVPAGLSFITSPAVALPVGVATV 69

Query: 81  AVYAANLSLG-KKVMNSDIKIGEVYVWR--IWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
                  ++G   +         V         L+ + A GL   LL   +    T    
Sbjct: 70  CAAFLFSAVGSIALSRQRPASDAVEAVVVEHRDLMLEAASGLV--LLFDPQGSVTTVGGR 127

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
              +  + +   S       +      L    V      +  + + +     A +     
Sbjct: 128 DRAEFLSWMRDPSGRGFIEQVHISDRILFLQAVDTLRQGRDALGVDLRLERSAVIEGNDQ 187

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                +     +     L+    +   I+  +  +  +D     AE  N AKSRFLA++S
Sbjct: 188 FIHIRMEMSARRDGEGRLTSIVSQSRDISYDQQLRDEADRKTAEAESANDAKSRFLAAVS 247

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAILGFS+++  E  G L N   +EY+G I +SG HLL+++N +LD+S+IEAG
Sbjct: 248 HELRTPLNAILGFSDILSGEYFGKLENNRQREYVGLIRQSGAHLLSVVNTMLDMSKIEAG 307

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           RYEL      +   +  C  ML L+A+EK + +  ++   L  + AD++ ++QV++NL+ 
Sbjct: 308 RYELVPEPFPIEASIGACEAMLALQAKEKGLTLTSRVQRGLGDIVADQRAIQQVLINLVG 367

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG V +     +     +S+ D G GIA   + ++   F Q          G
Sbjct: 368 NAIKFTDAGGAVTIDAAM-ADGMLKLSVCDTGIGIAADRLASLGQPFVQIQNDYTRRYAG 426

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHESTQY 491
            GLGL + + ++  HGG F I S   EG  +  ++P   + V+   P D + +  +
Sbjct: 427 TGLGLSLVKGLVGLHGGSFAIASAPGEGTVITILIPLDGSGVVVQQPVDANRTVDF 482


>gi|153869957|ref|ZP_01999457.1| Serine/Threonine protein kinase and Signal Transduction Histidine
           Kinase (STHK) with GAF sensor [Beggiatoa sp. PS]
 gi|152073580|gb|EDN70546.1| Serine/Threonine protein kinase and Signal Transduction Histidine
           Kinase (STHK) with GAF sensor [Beggiatoa sp. PS]
          Length = 784

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 26/287 (9%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLN 265
             ++   E     A+LE A   +++ R+ AE         N AKS FLA+MSHELRTPLN
Sbjct: 493 TQIAISIENAFFYAQLEQAHFAAEQARRIAEQTRQNVEAANRAKSTFLANMSHELRTPLN 552

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILG+SE+I+ E      N+   + +  I  +G  LL +I++ILD+S+IEA + EL  S 
Sbjct: 553 AILGYSEMIQEEAQESGYNDILPD-LDKIQIAGIQLLGIISDILDISKIEAEKLELDLSE 611

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            ++  +V E +  +QL  +     +  +    L  ++AD   + Q++LNLL+NA KFT  
Sbjct: 612 FAVTYLVEEMVTTIQLMIEMGGNTLNIEWGNELGMLYADYHKVGQILLNLLNNAGKFTNH 671

Query: 386 GGRVHVTVGWTS-----------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            G + +T+                         +  I D G GI   ++  +   F QG 
Sbjct: 672 -GTITLTITRKKLSLGKGNNKSNSKNKAFSEWIFFQIADTGVGIPPEQMNHIFEPFTQGD 730

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +      G GLGL I++      GG  L+ S++ +G      LP  
Sbjct: 731 NSSTREYGGTGLGLTISEYFCRAMGGNLLVSSEVGKGSVFTVQLPIR 777


>gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 917

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  L              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPLSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+  I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1116

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 11/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      +++AE    AKS FLA+MSHE+RTP+N I+G S+++    +   
Sbjct: 710 HDITATKQAEQDLIHAKEKAEAAYQAKSEFLATMSHEIRTPMNVIIGLSDILMETPIDH- 768

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++++  + ++ + LL+L++ ILDLSRIEA +  L +  ++L  +V E + M+ + 
Sbjct: 769 ---EQRDHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIV 825

Query: 343 AQEKNIEIF--QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396
           A +K + +               DE  +RQ+++NL+ NAVKFT   G + VT+       
Sbjct: 826 ADQKGLRLESQVTQATDDYWSLGDESRIRQILVNLIGNAVKFTEK-GSIWVTLELFTDTL 884

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 + +KD G GI    + T+   F Q   +      G GLGL I + I+   GG+ 
Sbjct: 885 ERTLVRLCVKDTGIGIGPEHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKV 944

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            + S   +G      LP   V     +++ 
Sbjct: 945 WVESNPSQGSLFCVELPFIPVQPIALKEDT 974


>gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 609

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+   ++  F+A++SHELRTPL  I  ++E +E   +   + +    ++G I      ++
Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+++    L +    +++++ +       + ++K+I    ++ P +S+  
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D  G+ QV+ NL+SNA+K+T  GG + +    T      +S+KD G GI + ++  +  
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  HGG   ++S+L +G  V   LP 
Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601


>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 847

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 156/392 (39%), Gaps = 25/392 (6%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
             V   R  L  G     +CW +  +            +  S  +   +    +S   L 
Sbjct: 182 ISVRHSRQRLGFGLALGAVCWLISDVAYY--GLDVTEPVAGSNDIGWMVGAILMSTATLR 239

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT-----ALSFFTYITYHLFKSNVKIL 215
                +            +  + +  + L    A      A+    ++          + 
Sbjct: 240 PVSPPTPETAEPPSHRAPLGRLGIAIVPLLVPPAIMIVNQAIGRSPHVVEVSVGMTALVA 299

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                   ++    VA+      R  A E + +KS FLA+MSHE+RTP+N ++G + ++E
Sbjct: 300 IAFVRMGRMLQWEVVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLE 359

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +E  ++Y   +  +   L+ +IN+ILD S++EAGR +L      L+ +V E 
Sbjct: 360 ATDL----DERQRQYAEGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEV 415

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV- 393
             ++   AQ K +E+     P L   +  D   +RQV+LNL SNAVKFTA  G V V   
Sbjct: 416 AELIAEPAQSKGLELLAYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTAR-GEVLVRAS 474

Query: 394 -----------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                      G  +G      + D G G+ E +   +   F Q   +      G GLGL
Sbjct: 475 LEASLQDGPEAGAEAGVVVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGL 534

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I++ ++   GGQ  + S+   G      LP 
Sbjct: 535 AISEHLVTAMGGQIGVDSRPGLGSTFWFTLPL 566


>gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 940

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/476 (22%), Positives = 175/476 (36%), Gaps = 42/476 (8%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVM 94
            ++     +    + +        +  G  F  +      W+ + +  Y          +
Sbjct: 181 YLLRRKDRAPLFCALLCLFIAARASVTGEIFLLSYFPDLSWNAVYIVQYLGFYLALPAFL 240

Query: 95  N--SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +   E+            A      L+      TW   +  +Y    LL  L   
Sbjct: 241 QFMRILYPDEMPAKLAAAAWAAGAASSLTVLIAPPSVYTWLMPFYEVYAVVLLLFVLGPV 300

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-------ITY 205
            +            F P   AL    +    V +  L G        F +       ++ 
Sbjct: 301 LIRAIARGREGAALFLPGTAALVLAVVNDSLVSNDILWGPYIGDFGVFVFIFFQCCVLSM 360

Query: 206 HLFKSNVKILSCQAEKDD-------------------------LIAELEVAKSLSDETRK 240
              +S   +     E  D                         L   ++   S     ++
Sbjct: 361 RFSRSFATVEKLSEEMRDKNTELIKLDGERCEALKRLEEYSRNLENIVQERTSALARAKE 420

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A+  + AKS FLA+MSHE+RTP+N +LG  E++E   +    +E  +EY+  +      
Sbjct: 421 EADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEATPL----DEEQREYVSVVRDCSNL 476

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL+LIN++LDLSRIE G   L E       + R  + +++  A  K ++   +  PS+  
Sbjct: 477 LLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEFSPSVPP 536

Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V   D   +RQV+LNLL+NAVKFTA  G + +   + +G      ++D GPGI E    +
Sbjct: 537 VLRGDPVRLRQVLLNLLNNAVKFTAK-GCITLRA-YVTGNEITFEVEDTGPGILEEIRGS 594

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +G     S   G GLGL I + ++   GG     +    G      +P  
Sbjct: 595 IFKPFTRGHSGTDSMHGGAGLGLSICRRLVELMGGGISFETTAGVGSLFRFTVPLK 650


>gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1145

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 169/355 (47%), Gaps = 10/355 (2%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L +   ++     +L    F     +  +          V       +L        ++ 
Sbjct: 581 LSVFGLLAGGLAVVLWMLYFQQMADLSGSGLDAPASLRSVFIKLFCLLLVVVGVGAWWLV 640

Query: 205 YHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                  V     + + + L+ E+E      +     ++ AE  NLAKSRF+A MSHELR
Sbjct: 641 LTNESRAVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELR 700

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+ILG+++++    +        K+ IG I RSG+HLL+LI+ +LD+++IEAG+  L
Sbjct: 701 TPLNSILGYAQILH---VDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRL 757

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
           +   ++L   + + + M   +A++K +         L   V AD+K +RQ+++NLL NAV
Sbjct: 758 ASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAV 817

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG V + + + +    Y  + D G GIA+ +   +   F + S A    + G GL
Sbjct: 818 KFTDHGG-VTLRLRY-AREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGL 875

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GL I++ ++   GG+  ++S++ +G      +    V    P    E  Q   YA
Sbjct: 876 GLAISRMLVHIMGGELSVQSQVGQGSSFHLKIYLPEVHVPRPRIKLED-QMSGYA 929


>gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ER-3]
          Length = 2346

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1777 VGISLANAFLYRNASKVSAANAAMVEAQKRALALAREAERKSKVAEAEAKHNVKLKEDAA 1836

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++  ++    +     Y+  I      LL LIN
Sbjct: 1837 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADTLLTLIN 1892

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   ++  ++  + +D    +  V  D
Sbjct: 1893 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMGD 1952

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    T      I     + D G GI+  ++  +
Sbjct: 1953 PVRLHQIFMNLLSNSYKFTPK-GSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2011

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L
Sbjct: 2012 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2064


>gi|149927444|ref|ZP_01915699.1| PAS [Limnobacter sp. MED105]
 gi|149823936|gb|EDM83161.1| PAS [Limnobacter sp. MED105]
          Length = 489

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 12/344 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
                L    ++ A+        + ++    V  L    ++    L   L  +       
Sbjct: 151 LDYGVLRFTFAVDAI-AEGFWGLIRVAMLSAVGGLVGGMLIIWFPLKRWLGALERVETFD 209

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASM 256
                    +S + I +   E      +L+      D     ++ AE  N AKS FLA+M
Sbjct: 210 AAPSCVEGDESELLIENLPTEFRPAFEKLKRTTEHLDGESRAKEVAESANRAKSEFLANM 269

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLN I+G +E+     +  +     +E++   + S   LL ++NEILD S+IEA
Sbjct: 270 SHEIRTPLNGIIGMTELALETKLTKV----QREFLQVANDSANTLLLIVNEILDFSKIEA 325

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G   +         I  + +  +  RA+ K +E+              D   + Q+I N+
Sbjct: 326 GMMTIDTVVFDPKRIFEQALGPMIPRAKSKCLELQCTFSEGFPKEFVGDPVRLLQIINNM 385

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           + NA+KFT  GG  +HV  G      Q +  SI+D G G+   ++ ++   F Q   +I 
Sbjct: 386 VGNAIKFTERGGVYLHVQAGKDLQGIQLLKCSIRDTGIGVPFEKVSSIFKPFEQADSSIT 445

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
               G GLGL I + ++    G+  + S++  G      LP  R
Sbjct: 446 RNFGGTGLGLTITRRLVELMRGEVWLESQVGVGSTFHFSLPEMR 489


>gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative
            (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC
            A4]
          Length = 2312

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 16/302 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        + E  AK    E +      E+  
Sbjct: 1796 IGISLSNALLFREIRKVGATNASMVESQKRALTQARDAEQKAKVAEAEAKHNVKLKEDAA 1855

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   +    EY+  I      LL LIN
Sbjct: 1856 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1911

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + +D       V  D
Sbjct: 1912 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLDEVPPDLVVLGD 1971

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V+   T      +    S+ D G GI + + P +
Sbjct: 1972 PVRLHQIFMNLLSNSYKFTPK-GSVTVSAKVTREGKGRVRLECSVSDTGIGIPDEQKPRL 2030

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L   +V +
Sbjct: 2031 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSVPGAGTTVTFHLSFNKVKS 2090

Query: 480  FI 481
              
Sbjct: 2091 ES 2092


>gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 2401

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1832 VGISLANAFLYRNASKVSAANAAMVEAQKRALALAREAERKSKVAEAEAKHNVKLKEDAA 1891

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++  ++    +     Y+  I      LL LIN
Sbjct: 1892 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADTLLTLIN 1947

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   ++  ++  + +D    +  V  D
Sbjct: 1948 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMGD 2007

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    T      I     + D G GI+  ++  +
Sbjct: 2008 PVRLHQIFMNLLSNSYKFTPK-GSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2066

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L
Sbjct: 2067 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2119


>gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
 gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
          Length = 896

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
 gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
          Length = 828

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 18/280 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++  ++NV +   Q E   +        I EL+  ++   + +++AE  +  KS FLA+
Sbjct: 559 QWNWVRTNVVVNQYQPENGVIELISVNYDITELKETEAKLIDAKEKAETADRLKSAFLAN 618

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLNAI+GFS ++        N E  ++Y+  +  + + LL LI++ILDLS+IE
Sbjct: 619 MSHEIRTPLNAIVGFSSLLVQG----ENPEEREQYMAIVEENNELLLQLISDILDLSKIE 674

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG ++  +  + +  +  + +  ++L+A+   +E+          + +D   + QVI N 
Sbjct: 675 AGTFDFVKQELDVNQLCEDMVRTMKLKAR-PGVEVVFDHRLPECIIVSDRNRLNQVIANF 733

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           ++NA+KFT+  G + +  G          + D G GI + +   +   F +      S  
Sbjct: 734 MNNAIKFTST-GSIRLGYGQAETNLLRFYVADTGIGIIQEKQAEIFDRFVKL----NSFV 788

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            G GLGL I++SI+   GG   + S+  +G      LP  
Sbjct: 789 HGTGLGLSISKSIVEQLGGTIGVESESGKGACFWFTLPVA 828


>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1620

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 11/255 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AEE   AKS FLA+MSHE+RTP+NAI+G S +     +     +  ++YI  ++RS ++
Sbjct: 732 QAEEATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTEL----TDKQRKYIEKVYRSAEN 787

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N+ILD S+IEAG+ ++   A  L D+      M+ L+A+E  +E+   +  ++ +
Sbjct: 788 LLGILNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPT 847

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416
           +  D   + Q+++NL +NAVKFT   G V V+       G     + S+KD G G++E +
Sbjct: 848 LVGDPLRLGQILINLGNNAVKFTPR-GEVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQ 906

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   +      G GLGL I + +    GG   + S+   G           
Sbjct: 907 RKKLFQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFT--ARF 964

Query: 477 VLNFIPEDNHESTQY 491
                P     S  +
Sbjct: 965 GKQAAPAAPDRSRDW 979


>gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
 gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
          Length = 793

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE       E  K AE+ N AKS FLA MSH++RTP+NAI+G + + +   
Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E   + +  I+ + + LL+LINE+LD+S+IE+GR  LSE   ++ +++++ ++M
Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q   + K   +   +      +V  D + ++QV++N+LSNA+K+T   GR+ + +    
Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427

Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       +DNG G+    +  +   F + S       QG GLG+ I+  I+   G
Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S+  +G      +P     +  P+D  E
Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520


>gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 793

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE       E  K AE+ N AKS FLA MSH++RTP+NAI+G + + +   
Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E   + +  I+ + + LL+LINE+LD+S+IE+GR  LSE   ++ +++++ ++M
Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q   + K   +   +      +V  D + ++QV++N+LSNA+K+T   GR+ + +    
Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427

Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       +DNG G+    +  +   F + S       QG GLG+ I+  I+   G
Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S+  +G      +P     +  P+D  E
Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520


>gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 793

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE       E  K AE+ N AKS FLA MSH++RTP+NAI+G + + +   
Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E   + +  I+ + + LL+LINE+LD+S+IE+GR  LSE   ++ +++++ ++M
Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q   + K   +   +      +V  D + ++QV++N+LSNA+K+T   GR+ + +    
Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427

Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       +DNG G+    +  +   F + S       QG GLG+ I+  I+   G
Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S+  +G      +P     +  P+D  E
Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520


>gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 905

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 122 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 181

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 182 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 241

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 242 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 298

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 299 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 354

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 355 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 414

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 415 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 474

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 475 QMGGEIGVDSTPGEGSEFWISLKLPKAR 502


>gi|87306646|ref|ZP_01088793.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290825|gb|EAQ82712.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 704

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +  ++   +              L+ +  +++  ++   +  AELEV     +E+R
Sbjct: 235 LRPLLTTVAQLIVAMKNERSRLATEERLWDTLDELVEQRSRVQEYAAELEVKNHELEESR 294

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE  NLAKS FLA+MSHE+RTP+ A+LGF++V+  +       ++  + I  I R+G 
Sbjct: 295 RRAEASNLAKSEFLANMSHEIRTPMTAMLGFADVLLEDGDIQKAPKSRIDVIRTIQRNGI 354

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+ILD+S+IEAG+  + +       I++E + ++Q+RA++  +E+  + +    
Sbjct: 355 HLLGLINDILDVSKIEAGKLAVEQVQCRPAAIIKEVLSLMQVRAEQSQVELKLRYETETP 414

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEG 415
             + +D   +RQ+++NL+ NA+KFT   G V + V +            + D G G+   
Sbjct: 415 QEILSDPTRLRQILMNLIGNAIKFTEE-GSVTLAVRFIESPEWPMLEFDVIDTGIGMTLE 473

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAI 471
               +   F Q   ++     G GLGL I+  +    GG    ++S    G      
Sbjct: 474 HQQNLFQPFSQADSSMSRRFGGSGLGLAISLRLAGLLGGDVSLVQSTPGTGSTFRFR 530


>gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           10329]
          Length = 576

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 8/280 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  +     R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++   T+    ++   + +  +  S + LL +I++ILDLS+IE+G ++L+E 
Sbjct: 231 NSVLGMLDILRQSTL----SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
            I L D V   I   +  A  KN+         S    W D   + Q++ NL+ NA+KFT
Sbjct: 287 WIHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V V+V         +SI D G GI+  +   + T+F QG  +I     G GLGL 
Sbjct: 347 DS-GSVSVSVA-EENDEVVVSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482
           I + ++    G+  ++S+  EG +    +P  TR     P
Sbjct: 405 ITKHLVEMMRGEISVKSRENEGSDFTIRIPVLTRYNQSRP 444


>gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568]
 gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 906

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 159/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL+ + I+ L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    M      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L     +L + + E I++L   A EK +E+   +   +   V  D 
Sbjct: 346 DVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422
             ++Q+I NLL NA+KFT  G   + V +     R   + ++  D G GI+E +   +  
Sbjct: 406 LRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDRQMELEVQIHDTGIGISERQQSQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+L  G      +
Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515


>gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB]
 gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 955

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           ++  + +           +  L   +          ++ AE  N+AKS FLA+MSHE+RT
Sbjct: 534 VSRDISEQVRNEEELAQHRLHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRT 593

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI G + +I    + P       E +  +  + +HLL  IN ILDLS+IEAG++ L 
Sbjct: 594 PLNAISGMAHLIRRGGLAP----EQMERLDRLELASEHLLETINAILDLSKIEAGKFSLE 649

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           E+ + +  I+     +LQ RAQ K++++  + DP+L  +  D   ++Q +LN +SNA+KF
Sbjct: 650 EAPLRVAGILDNVTAILQDRAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAIKF 709

Query: 383 TAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   GR+ +                 ++D G GIA   +P + ++F Q   +I     G 
Sbjct: 710 T-ESGRITLRARRVDEDADSLLLRFEVEDTGIGIAPEHLPRLFSAFEQADNSITRRYGGT 768

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I + I    GG     S L +G      
Sbjct: 769 GLGLAITRKIARLVGGDAGASSVLGQGSTFWLT 801


>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 683

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 20/241 (8%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLASMSHE+RTP++AILG +E++    + P      + Y+     +G++LLN+I
Sbjct: 150 NRAKSDFLASMSHEIRTPMHAILGMAELLLETPLSP----EQQRYVEIFRNAGENLLNII 205

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD+S++EAG  EL      L +I+   +  L +RA  K +E+   I P +   +  D
Sbjct: 206 NDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGD 265

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----------TSGRGQY---ISIKDNGP 410
              ++Q+++NL+ NA+KFT   G V V V             T   G+     SI D G 
Sbjct: 266 PVRLQQILINLVGNAIKFTEK-GEVVVHVEKSTELTGGPETGTEEGGKVELLFSIADTGI 324

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + +I  +   F Q   +      G GLGL I++ ++   GG   + S++ +G     
Sbjct: 325 GIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGTTATF 384

Query: 471 I 471
            
Sbjct: 385 T 385


>gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 582

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TP+ +I GF+E +    M   +    + ++  I +  + 
Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+LDLS+IE   ++L    + +  ++ E   + + +A EK I++  +    L  
Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   M+Q++LNLL+NA+ +T   GRV V       +   I +KD G GI E EIP +
Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAE-EREKEVLIHVKDTGIGIEEKEIPRI 525

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + SK+  G       P 
Sbjct: 526 FERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
          Length = 591

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 180/428 (42%), Gaps = 30/428 (7%)

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +W    L   +A + L   ++       +   +   L    + IG    +   +     
Sbjct: 53  ILWGGTFLLSLSAVIFLILILVIKRNSSFKNISFIYKLFWSILVIG----VFPFLYR-DA 107

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
           +   + +       + +    L    L    F+    ++V +              L  +
Sbjct: 108 SMSLIPLNCVVLAGVLICAPILKKNDLR---FIYLVSIIVNVCACLYAKDIPFYYYLQVV 164

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEK----DDLIAELEVAKSLSDETRKRAEEENLA 248
           +    ++   +  +L    +++   Q +      + I E E  K+  +E +      N A
Sbjct: 165 IINITAYL--LANNLHGKYMELFDKQRQAYKAYMNSILEQESLKAKLNEEK----SANSA 218

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL+ MSH+LRTPLN I+G S +   +    +  E   +Y+  I++SG++LL+LIN++
Sbjct: 219 KSEFLSRMSHDLRTPLNGIIGSSYLALNDD---IPREEVNDYLNKINQSGKYLLSLINDV 275

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKG 367
           LD+S+IE+ + EL     +L + +     +++ +  E +I+         +  V  D   
Sbjct: 276 LDMSKIESDKMELHPEPYTLSEFLDTVNSIIKEQCSENDIDFDIVCKEVDIKCVMLDRLR 335

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTS 423
             Q+ LNLLSN+VKFT  GG++ + +   S       +   ++D G G+++  +      
Sbjct: 336 FNQIFLNLLSNSVKFTPKGGKIDLIIEHLSKDDDKIKKRFIVRDTGIGMSKEFLAHAFEP 395

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q      S  +G GLGL I   I+    G+  I S+  +G  V   L    V +   E
Sbjct: 396 FTQEKAGDTS--EGTGLGLSIVYKIVELMNGRIYIESEPGKGTSVTVELEVDIVKD--ME 451

Query: 484 DNHESTQY 491
           D  E T++
Sbjct: 452 DKEEKTEF 459


>gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + EL++        ++ A+  + AK  FLA+MSHE+RTP+NAI+G S++     +    +
Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  K Y+  I R+ Q LL++IN+ILD S+IEAG+ ++      L  ++ +   M   +  
Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K +E+   + P++   ++ D   + QV++NL++NA+KFT   G V +++     +    
Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S++D+G G+ + +   +  SF Q   +      G GLGL I + ++   GG   + 
Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250

Query: 460  SKLREGVEVIAI 471
            S+   G      
Sbjct: 1251 SQFGHGSTFYFT 1262


>gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1269

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 142/256 (55%), Gaps = 10/256 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A   +    +RA   N AKS FLA+MSHE+RTP+NA+LG +EVI  E      +E   E
Sbjct: 637 RATETARMEERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILREC----KDEKILE 692

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y  +I  +G+ LL+LIN+ILD S+IEAG  E++E+      ++ +   M+ ++A++K ++
Sbjct: 693 YAQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILD 752

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS---- 404
           +   ID  L  +++ DE  +RQ+I+N+L+NAVK+T  GG V +        G  I+    
Sbjct: 753 LKFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGG-VTLEATGIRDYGDTITLKIK 811

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI + E+PT+   F +         +G GLGL I  S++   GG  ++ S   +
Sbjct: 812 ITDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGK 871

Query: 465 GVEVIAILPNTRVLNF 480
           G     +LP   + + 
Sbjct: 872 GSTFTIVLPQKVIGDS 887


>gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 917

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 858

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 157/387 (40%), Gaps = 20/387 (5%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
            W++      G  W   ++              K +  L    +      +L Y +    
Sbjct: 345 RWVVAYSRLQGPGW--FSVSLVDRNIQRRSIAGKLSIALGLGILGVALQAVLAYFILYRR 402

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
           F   +   T           +    L   L       + +      +   +A   D    
Sbjct: 403 FVRPLEALTGHFGVARPRAAATNPALQPLLGS----RHEIGMLARTLEEQRATNKDAFDL 458

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           LE   +      +  E  N AKS FLA++SHE+RTPLN ILG ++V+   +     ++  
Sbjct: 459 LEARVAERT---RELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTSR----SKQR 511

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++    I  SG+ L  L+N++LD+S+IEAG+ ELS   +    +  +   + Q  A+ K+
Sbjct: 512 QDQARMIEESGETLTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKS 571

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQY 402
           ++   +IDPSL   +  D   +RQ + NLLSNA+KFT+  G V ++  W           
Sbjct: 572 LDFSVEIDPSLPERLEFDPLRVRQCLSNLLSNAIKFTSK-GSVQLSARWHRETDQAGLLE 630

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI   ++ T+ + F Q   AI     G GLGL IA+ +    GG     +  
Sbjct: 631 IKVCDTGIGIPPEKLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDITAEATP 690

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
            +G          +     P    E T
Sbjct: 691 GQGSTFTLTF-TAKPAQTRPAAPEERT 716


>gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 713

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 157/307 (51%), Gaps = 6/307 (1%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P +       +++    +I L  +       FT     +     ++ S   E   L    
Sbjct: 405 PPLRGWLAAPLVARDGRNIGLIQLSDKCEEEFTAEDEAIVVQLAQMASVAIENARLFEAE 464

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + A++L+++ R+ AE  N AK  FLA +SHELRTPLN I+GF++++  ++   L+   Y+
Sbjct: 465 QTARALAEQARREAEAANRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSG--LSAADYR 522

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I R+G+    LI+++LD+SRI +G+  +   A+ L+ +V   I  ++  A+ K I
Sbjct: 523 -ALETIERNGRLQAQLIDDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGI 581

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +  ++D   ++V AD   M+QV+ NLL+NA+KFT  GGRV + +     R   I + D+
Sbjct: 582 CLSGRLDDGATAV-ADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCR-GDRTLLIRVSDS 639

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467
           G GI+   +P V   F Q          G+GLGL I + I+  HGG    +S  + +G  
Sbjct: 640 GIGISPDFLPYVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTT 699

Query: 468 VIAILPN 474
               LP 
Sbjct: 700 FCVELPL 706


>gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 995

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +  + +  + ++ AE+ N+AKS FL+ MSHELRTPLN ILGF++++E   M   
Sbjct: 243 EDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDES 299

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  +++  +I   G HLL+LIN+ILD+SRIE G  ++S   + L+ +++ECI ++Q  
Sbjct: 300 LNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPL 359

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A++KNI I+ ++D      V AD   ++Q++LNLL NA+K+    G+V V         Q
Sbjct: 360 AKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFC-RLQENKQ 418

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           YI I D G G +  E   V   F +      + E+G G+GL + + ++   GG+  + S 
Sbjct: 419 YIHIVDTGVGFSVEEYTKVFVPFYRIE---STKEEGTGIGLSLVKQLVHLMGGEINVTSN 475

Query: 462 LREGVEVIAILPN 474
              G E    LP 
Sbjct: 476 KGTGSEFCFSLPL 488


>gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
 gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
          Length = 896

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|254443602|ref|ZP_05057078.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257910|gb|EDY82218.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1279

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 171/359 (47%), Gaps = 14/359 (3%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            L + ++      +    AV  + F +++A+     +   ++   L  +++      T   
Sbjct: 791  LSLTIAAPFWQTWPFRAAVVSALFLLLLAIYLTLYIRGKLMRRRLERVVSERTRELTEAN 850

Query: 205  YHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              L     +I   +       D+L   +       +  +K AEE +  KS FLA+MSHE+
Sbjct: 851  LQLTTQKSEIEQSRKIISRSHDELEELVGERTRELERAKKHAEESDQLKSAFLANMSHEI 910

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTP+NAI+GFS +I        +++  +++   I+ +   L  LI++ILDLS IEAG+ +
Sbjct: 911  RTPMNAIMGFSSMI---VTDKFSDDERRDFTKIIYNNCTSLATLIDDILDLSAIEAGQIK 967

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKN---IEIFQKIDPSL--SSVWADEKGMRQVILNL 375
            +++ A +L  ++ E      L+  EK+    ++     P L  + V +D   +RQ++ NL
Sbjct: 968  IAKRAFNLDGLLDELSDSFALQVSEKDPTRFKLLFTRPPELQSAIVVSDPLRLRQILSNL 1027

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            +SNA+KFT   G V+V   +   R     +I+D G GI++  +  +   F +      + 
Sbjct: 1028 ISNAIKFTQE-GHVYVRYEFEKHRPHVRFTIEDTGIGISQKHLDAIWQRFRKIEDDTNTL 1086

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             +G GLGLPI ++++   GG+  + S+  +G      +P    L  + +  H+    K 
Sbjct: 1087 FRGTGLGLPITKNLIELLGGEISVESEEGKGSRFTFSIPRGSNLRAVDKPTHQDNPQKS 1145


>gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385]
 gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385]
          Length = 1020

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 401 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ +
Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIDQ 576

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 577 AHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636

Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +     G+G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 637 TEQ-GEVRIRIRLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 695 LAISRKLVKAMGGELQLASQLGQGSCFWFTLPL 727


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1035

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 141/305 (46%), Gaps = 42/305 (13%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+++   + L +  R+ AEE + AKS FLA+MSHE+RTP+NAI+G + ++    +   
Sbjct: 468 EDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPL--- 524

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   +E++  I  SG  LL +IN+ILD S+IE+G+ EL     +L   V E + +L  R
Sbjct: 525 -NPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASR 583

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A E+ +E+   ID  +   V  D   +RQV++NL+ NA+KFT   G V + V        
Sbjct: 584 AAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQK-GNVTLYVKAKPMPMS 642

Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                        +I+D G GI+   +  +   F Q   +      G GLGL I Q ++ 
Sbjct: 643 QYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVE 702

Query: 451 NHGGQFLIRSK-------LRE--------------GVEVIAILPNTRVLNFIPEDNHEST 489
             GGQ  + SK       +                G           +LN  P    E T
Sbjct: 703 RMGGQIWVESKKTGESLVVGGTPLAVYESIPIAESGSVFYFT--ARFLLNPNP--APEPT 758

Query: 490 QYKCY 494
              CY
Sbjct: 759 DDTCY 763


>gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 701

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++  +
Sbjct: 291 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 350

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        ++++  ++ SG+H++ L+NEILD S+IE G++EL  S   L  I+     
Sbjct: 351 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 406

Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +      EK ++     D       + D+  +RQ+I NLLSNAVKFT   G V V +   
Sbjct: 407 IYSSLCFEKGLQFQLHSDIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 465

Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +   +Y   I ++D+G GI +  +  +   F Q          G GLGL I + I     
Sbjct: 466 NIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 525

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           G   ++S++ +G             +   ++ ++  + K Y
Sbjct: 526 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 564


>gi|269968417|ref|ZP_06182433.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269826965|gb|EEZ81283.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 573

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 24/305 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  +   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  ++++  T+    +E   + +  +  S + LL +I++ILDLS+IE+GR++L+E 
Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
            I+L D V   I   +  A++KN++        +    W D   + Q++ NL+ NA+KFT
Sbjct: 287 WINLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDKQFWIDSTRLSQILFNLIGNAIKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V V+V         ISI D G GI++ +   + T+F QG  +I     G GLGL 
Sbjct: 347 DE-GEVKVSVS-EQDAELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486
           I + ++    G+  ++S    G      +P                  T+ +  +  ++ 
Sbjct: 405 ITKHLVEMMRGKIAVKSDEHVGSTFTISIPVLTRCNQNRPVRIETNQPTKAMELLVVEDT 464

Query: 487 ESTQY 491
           ES Q+
Sbjct: 465 ESNQF 469


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 38/400 (9%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +       T  I + ++ +   M    + L 
Sbjct: 1634 LNIIVLPVLFEGEVKAIIELASFHPFSAIHQIFLDQLTESIGVVLNMIIANMRTEQLLLQ 1693

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
               +   L +Q+              L             L    +++     + ++   
Sbjct: 1694 SQGLTQELQSQSRE------------LTQQQEELKRTNTELEAQALELEEKAKQLEEQNT 1741

Query: 227  ELEVAKSLSDETR----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +E   +  +  R    ++AE+ +     KS FLA+MSHELRTPLN++L  ++++     
Sbjct: 1742 RVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKD 1801

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ +   EY   I+ SG  LL+LINEILDLS++EAG+ ++    I L ++ +      
Sbjct: 1802 GNLSGKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSF 1860

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A++KN+    ++  +    +  D + ++QV+ NLLSNA KFT  GG V + V     
Sbjct: 1861 RPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADK 1919

Query: 399  RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
              ++               + D G GIA+ +   +  +F Q   +      G GLGL I+
Sbjct: 1920 GVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSIS 1979

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            + I    GG+  + S L +G      LP   V    PED 
Sbjct: 1980 REIAKLLGGEIHVESTLGKGSTFTLFLPPEYV---APEDE 2016


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 158/356 (44%), Gaps = 29/356 (8%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            ++ +  L   +++ A    +L         P+ +  +    ++         G     +
Sbjct: 155 ILFTACMLCTIIALDAFFQRIL-------ISPLRMLANNTRKIARRKFVTVDVGSRMDEI 207

Query: 198 SFFTYITYHLFKSNVKILS-CQAEKDDLIAELEVAKSLSDET--RKRA---EEE--NLAK 249
                   H+ ++   +    +    +   ELE A  L  +   +  A   E      AK
Sbjct: 208 GILALNFNHMSRNLESLYKNLEVNVQERTHELESANQLLVKAIAKSEAMAVEAAKGTRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHE+RTP+NAILG +E++    +    ++  + ++  +  SG+ LL+LINEIL
Sbjct: 268 SQFLAAMSHEIRTPMNAILGMAEILADSHL----DDEQRRFVEILQESGESLLHLINEIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IEAG     +  ++L  I+ +   +       K +E+   I+  +   +  D   +
Sbjct: 324 DLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNINRDVPVQLMGDPSRL 383

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTV 420
           +Q+ +NL+ NA+KFT   G V V                  + ++KD+G GI + ++ ++
Sbjct: 384 QQIFVNLIGNAIKFTER-GFVVVETSLVQPDMADNGGSLKIHFAVKDSGIGIEDDKLDSI 442

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F Q   +      G GLGL I +S+    GG+  + S+   G  V   LP  +
Sbjct: 443 FDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGTTVHMELPFEK 498


>gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
 gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
          Length = 984

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +V E   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 996

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 157/433 (36%), Gaps = 31/433 (7%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
           ++ T        +         +           +   +         + +         
Sbjct: 338 AIATGLAIILLWTFVLLFNRKILVPLFERS--ERVFDSEHLSRTLIETVPVGLALVNADN 395

Query: 136 YLTIYKSATL-----LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
           +  + +SA +      +A +   L   ML      +F       +T + + +H+      
Sbjct: 396 HTVLLESAHMQALEKRVAAAGDVLIGGMLKQHAPAAFRASRGDAATTSDVELHLPS---- 451

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                       I   L  S  +           +             R  A+  N AKS
Sbjct: 452 -----GEGSTIDIAAKLTPSFYEGQPVIVAALSDVTAERQLARELTAARHAADSANAAKS 506

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLASMSHE+RTPLNAILG  E++E            +     +  S + LL ++N+ILD
Sbjct: 507 AFLASMSHEIRTPLNAILGHLELLERLPQAAPVVARVR----TVASSSRALLQILNDILD 562

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
            S++EAG            D+VR+   M    AQ K + +   ID +L   +  D   +R
Sbjct: 563 FSKVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHTIDAALPRYYLGDPGRIR 622

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQ 426
           Q+++NLLSNA+KFT   G V + V    G       I + D G GI       V  +F Q
Sbjct: 623 QMVVNLLSNAIKFTDR-GSVSIEVSAGKGNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQ 681

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP---- 482
              +I     G GLGL + + I    GG   + S+  +G      LP     +  P    
Sbjct: 682 IDASITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTVTLPLRHGDDTAPAHEG 741

Query: 483 --EDNHESTQYKC 493
             +   E+T  + 
Sbjct: 742 DSQTADEATDTRG 754


>gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 842

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +     + +    E      +L    +     ++ AE+ + AK+ FLA+MSHE+RTP+N 
Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S+++    +    +   ++ +  I  S   LL +IN+ILDLSR+EAG+ E+S    
Sbjct: 480 IIGMSDILAESPL----SAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           +L   V   + +L+ + +EK +   Q     L   V  D+  +RQ+++NLLSNAVKFT  
Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFT-Q 594

Query: 386 GGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            G V + V          +I + D G GI+E +   V   F Q   A      G GLGL 
Sbjct: 595 YGSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLT 654

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPED-NHESTQYK 492
           I+  +    GG   + S   +G        L   R     P   + E+ Q K
Sbjct: 655 ISNILAQRMGGGISLNSNEGQGSCFRLEIRLSAARTAPSAPTQISPETAQQK 706


>gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
 gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
          Length = 971

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 155/325 (47%), Gaps = 12/325 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLATALSFFTYITYHLFKSNVK 213
            +++  Y +    F   + +    +++  + + ++     A       Y + H  K   +
Sbjct: 311 IDYLYRYFMLALLFTACIVMVLSIVLTKRITVPLAKLARFAAQFKLGNYTSQHTLKGPHE 370

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               Q   +    ++       ++  ++AE  + AKS FLA++SHE+RTP+N +LG S++
Sbjct: 371 FQVLQEALNQGATKIAYDTQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQL 430

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +     +  + ++  +  SG+H+++++N+ILD S+IE G+++L+++   + D+V 
Sbjct: 431 LLKTDL----TQEQRHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVG 486

Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                    A+EK ++   +    S S  +AD+  +RQ++ N+++NA+KFT   G V V+
Sbjct: 487 TIESTYYSLAKEKGLDFSIQCHFDSNSWFFADKSRIRQILFNVINNAIKFTDK-GEVRVS 545

Query: 393 VGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +          R   I+ +D G GIAE  +  +   F Q  I+      G GLGL I + 
Sbjct: 546 LNQGQCDNPKERKLIITAQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQ 605

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +     G   + S   +G      L
Sbjct: 606 LANLMNGDIQLESAYGKGSTFTITL 630


>gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52]
 gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395]
 gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27]
 gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52]
 gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395]
 gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27]
          Length = 984

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +V E   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 818

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 147/258 (56%), Gaps = 13/258 (5%)

Query: 225 IAELEVAKSLSDETRK----RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           I +   A+   +E  +    +A + NLAKS FLA+MSHE+RTP+ A+LG+++V+    +G
Sbjct: 393 IVQDITARKEMEEALRDSEQQASQANLAKSEFLANMSHEIRTPMAAVLGYADVL----LG 448

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L +   +  +  + R+G+HLL LIN+ILDLSRIEAG+ E+  +  SL ++V +   ++Q
Sbjct: 449 HLKDPDNRNCVMIMKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTLMQ 508

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +RA EKN+ +  K    +   +  D   +RQ+++NL+ NA+KFT   G V + +      
Sbjct: 509 VRADEKNLMLNVKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQ-GEVRLVIRLLPDS 567

Query: 400 G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +++D G G++  +I  +   F QG  ++  A  G GLGL I++ ++    GQ 
Sbjct: 568 DKPIIEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTRAYGGSGLGLAISKRLVQMLKGQL 627

Query: 457 LIRSKLREGVEVIAILPN 474
            ++S++ +G      LP 
Sbjct: 628 KVKSEVGQGSIFRIRLPA 645


>gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 1143

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 159/379 (41%), Gaps = 5/379 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  ++V   A      +L L       P  L + +  +  I +++ +             
Sbjct: 331 RHLVIVPAKADAQVNAVLELGFFKPVDPLVLDLLERVSPAIGIALRSARFRARLQDALEE 390

Query: 167 FFPVVVALSTQA--IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q+  +   +         L  +          L ++N ++       +  
Sbjct: 391 TQRQAGELQAQSEELRVSNEELEEQGRALRESQVRLEQQQVELEQTNSQLEEQAQTLETQ 450

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             ELE A +         E+ +  KS FLA+MSHELRTPLN++L  S+++   + G L++
Sbjct: 451 RDELERAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSD 510

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  SG  LL LIN+ILDLS+IEAG  E+    ++L  +  +        A+
Sbjct: 511 EQIK-YANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAE 569

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +     +    +  + +D   + Q++ NLLSNA KFT   G+V + +          
Sbjct: 570 KKGLGFDISLSDDCARTIESDRMRLEQILKNLLSNAFKFTER-GQVSLAIERVDDAFIRF 628

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI+  +  ++  +F Q    I     G GLGL I++ +    GG+  + S+  
Sbjct: 629 AVSDTGIGISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPG 688

Query: 464 EGVEVIAILPNTRVLNFIP 482
           EG      +P        P
Sbjct: 689 EGSTFTLTIPLAYDAVAQP 707


>gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 557

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 11/265 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +            I  ++  +    E +++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 152 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 211

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++          E  ++Y+  +H + + LL L+N+ILDLS+IEAG  E   S + + 
Sbjct: 212 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 267

Query: 330 DIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++ +   + +++      ++I  +       V  D   + QV+ N +SNA+KFT   G 
Sbjct: 268 LLLNDLEQLFRMKIGSNSPVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTE-GS 326

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + +    +S  G    + D G GI+  ++  V   F +          G GLGL I ++I
Sbjct: 327 IRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTI 381

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +   GG+    S++ +G      LP
Sbjct: 382 VNKLGGEIGAESEVGKGSTFWFTLP 406


>gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 714

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 150/319 (47%), Gaps = 16/319 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLF---KSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             + L   L  ++S  +          ++N   L    E + +  +L+ AK+++ E  + 
Sbjct: 259 FILLLFAGLFYSISRLSLADQRAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVATEALQT 318

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AK+ FL++MSH++RTP+NAI+G + +I        N     EY   I  S QHL
Sbjct: 319 AENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKIDISSQHL 375

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSS 360
           L +IN++LD+S+IEAG+     S  S++D ++E   +   +  EK        +      
Sbjct: 376 LGIINDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQQTFTIIKENIQHEW 435

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNGPGIAEG 415
           V  D+  + Q+  NLLSNAVK+T  GG +   V     +          + DNG G++  
Sbjct: 436 VNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFLVSDNGMGMSAD 495

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              T+  +F +   ++ +  QG GLG+ I ++++   GG   + S+L +G     +L   
Sbjct: 496 FKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQGSCFEVLLDLK 555

Query: 476 ----RVLNFIPEDNHESTQ 490
               R +    ++  +   
Sbjct: 556 IAEDRTVALAAQEETDEQD 574


>gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 607

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/253 (38%), Positives = 146/253 (57%), Gaps = 1/253 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E ++ +   DE R  A+  + AKSRFLA+MSHELRTPLNAI+GFS++I  E    L
Sbjct: 327 RDITERKLHEQALDEARAEADRADDAKSRFLATMSHELRTPLNAIIGFSDMIVQEDELRL 386

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  KEY   I+ SGQHLL+++N ILD+S++E+G +E+     +    +  C  +L L+
Sbjct: 387 GAERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALK 446

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++  I++  +   +L  V  D +  +Q++LNL+SNAVKFT  GG V V+          
Sbjct: 447 ARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLVSNAVKFTERGGTVTVSAA-VESTRLV 505

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIAE ++  +   F Q     +   +G GLGL I +S++  HGG+  +RS++
Sbjct: 506 LCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRSQI 565

Query: 463 REGVEVIAILPNT 475
             G  V   LP  
Sbjct: 566 DCGTTVTVSLPLA 578


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 8/289 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +       + +         A     I + +  + +  E  +RAE  N AKS FLA+MSH
Sbjct: 359 WVLASGRVIDRDAEGRAIRIAGVHKEITDRKQVEDMLKEAVERAEAANRAKSEFLATMSH 418

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N I+G + ++    +          +   +  S + LL++IN+ILD S++EAGR
Sbjct: 419 EIRTPMNGIIGMTGLLLDTQLTR----EQMHFANTVRTSAEALLSIINDILDFSKMEAGR 474

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377
            E       +  ++   + +L  R + +N+E+   + PS   V + D   +RQV+LNL  
Sbjct: 475 LEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSARGVFYGDAGRLRQVLLNLAG 534

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT IG   + +             I + D G GI++     + T F Q   +    
Sbjct: 535 NAIKFTEIGSVHIGIRAETEFDDMVRLRIEVVDTGIGISDNAKSRLFTMFTQADSSTARR 594

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             G GLGL I++ I+   GG+    S   +G      +   R      +
Sbjct: 595 FGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWFQVSLRRSDEQTSD 643


>gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 917

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
 gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
          Length = 819

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 203 ITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +       ++K++  + E  D+      I +    +      R RAE  N AKS FLA+M
Sbjct: 160 VVRLWNGFSIKLVERRGEDGDIVSLCLNITDTIKREQELTLARTRAEAANRAKSAFLANM 219

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTP+N ++  SE++    +    +E    Y+  I +SG+ LL +IN++LD S++EA
Sbjct: 220 SHELRTPMNGVVAMSELLNESAL----DEEQALYVETIRKSGEALLVIINDVLDYSKMEA 275

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            + +L  +   L  ++ + +++ +  AQEK++++    D  L      D+  +RQV+ NL
Sbjct: 276 EKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNL 335

Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L NAVKFT   G V + V         +   +SI+D G GIA   I  +   F Q     
Sbjct: 336 LGNAVKFTLE-GHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDER 394

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482
             A +G GLGL I + ++   GG+  + S++ EG        LP        P
Sbjct: 395 NRAFEGTGLGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRIALPLDAADGEPP 447


>gi|87307352|ref|ZP_01089497.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290092|gb|EAQ81981.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 830

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +   ++ L   +L  A+ L+   + ++      +   +  +S A        F   +   
Sbjct: 316 LMAPLTRLRWNILGVALLLASIALGISWLVGNRLRTRIARLSHAAKRIGDGEFGLQVDDE 375

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                  ++         I     +       + RAE  NLAKSRFLA+MSHELRTP+ A
Sbjct: 376 SHDELNDVVRQFNAMSWKIV---QSHDELLAAQHRAESANLAKSRFLATMSHELRTPMTA 432

Query: 267 ILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           ILGF+E ++E    G L  E   E +  I R+G+HLL LI+++LDLS+IEAGR E+    
Sbjct: 433 ILGFTENLLESPDYGSL--EERNETLNTILRNGEHLLGLIDDVLDLSKIEAGRTEIQTEL 490

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
            S   I  E I +L+ RA  + + +  +    +   +  D   +RQ++LNL+ NA+KFT 
Sbjct: 491 CSPGQIANEVIGILKKRAASRRLTLRIRCKTPIPAEIETDALRLRQILLNLVGNALKFTE 550

Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            GG + + +  T G        + ++D GPGI   ++  +   F Q       +  G GL
Sbjct: 551 KGG-ISLELSSTFGDVGRRMLRVRVEDTGPGIPSDQLEHIFEPFVQVDSTTSRSFGGAGL 609

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLPI++ +    GG  ++ S +  G      +P 
Sbjct: 610 GLPISRRLAELLGGTLIVESTIGTGSAFTLSVPV 643


>gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
 gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
          Length = 1000

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 3/270 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L   N ++ + + E +   +EL       +  + +  E +  K+ FL++MSHELRTP
Sbjct: 441 SKTLEFQNRELEAQKTEMEAQSSELAEQNRELEMQKIQLHEASRLKTNFLSNMSHELRTP 500

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+++  S V+       +  +    Y+  I R+G+HLL+LIN+ILD+SRIE+GR E+  
Sbjct: 501 LNSVIALSGVLSRRLNEKIPADEL-SYLEVIERNGKHLLSLINDILDISRIESGREEVDV 559

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S   + ++V + + +++ +AQ+KNI++ +        + +D    R ++ NL+ NAVKFT
Sbjct: 560 SKFIVEELVTDIVSIIKPQAQQKNIDLIKATISKDIVITSDIDKCRHILQNLVGNAVKFT 619

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V + V  T      IS+ D G GIAE  I  +   F Q          G GLGL 
Sbjct: 620 EK-GSVSIDVVKTQ-NAIEISVTDTGIGIAESNIDHIFDEFRQADGGTSRKFGGTGLGLA 677

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           IA+      GG   ++S L EG      LP
Sbjct: 678 IAKKYANLLGGTVTVKSILGEGSTFTLSLP 707


>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 931

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 22/307 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL   + + +++L   A EK +E+   I   +    
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + +  +D G GIAE +  
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDTGIGIAELQQS 462

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP   
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNP 522

Query: 477 -VLNFIP 482
             +   P
Sbjct: 523 HAMPTEP 529


>gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 916

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 28/355 (7%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201
           ++  + ++ ++ F       +        L+   ++    +   L     M         
Sbjct: 388 VIAVVELATMTKFNALQQELVKQVTETFGLTVNGVLGRMEIVRLLNESRAMTEELQVQSE 447

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251
            +     +  ++        + L    + A+      ++ ++  EE           KS 
Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAESKSRELEKAKQELEESAEQLILNSNYKSE 507

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLN+IL  SE++   +   L +E   E+   IH SG+ LL LIN+ILDL
Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENSQDHLTDEET-EFAKVIHSSGEDLLALINDILDL 566

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370
           S++EAG+ ++  + +++ ++  +        A +KNI+        +  V + DEK  +Q
Sbjct: 567 SKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNIDFHISKADHVVDVFYTDEKRFQQ 626

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIP 418
           +I NLLSNA KFT   G V + +   +                 I++ D G GI + +  
Sbjct: 627 IIKNLLSNAFKFT-EHGSVTLAINQLAQSQLTSNMQDISDDWLEITVSDTGIGIPKDKHQ 685

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  SF Q   A      G GLGL I +      GG   ++S+  +G      +P
Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSEEGQGSSFTLTIP 740


>gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 909

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 157/378 (41%), Gaps = 13/378 (3%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W     +  I I         +           +    T ++A  ++     ++   +  
Sbjct: 126 WTHVTTIVPIRIRSDVIGSVAMTASLEKVWRDALSDFMTFIVASLVAFALALLIAQRMQH 185

Query: 166 SFFPVVVALSTQA---IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           S    + AL++ A     S    + +                  L +   +       +D
Sbjct: 186 SLLKALGALTSTANRVAESKDFTERASKYSNDEIGQLADAFNTMLIEIADRDHELTEYRD 245

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   +++        +  AE+ N AKS FLA+MSHE+RTP+N I+G ++++   ++   
Sbjct: 246 HLEDVVQLRTQELRLAKDNAEQANRAKSAFLANMSHEIRTPMNGIIGVADLLAAGSLNAH 305

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +  +  +  S   LL L+N+ILD SRIEAG  +L +   S+ + + + I +    
Sbjct: 306 ----QQNQLTTLRSSADTLLYLLNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPT 361

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A++++++++  I+PSL   +  D   + QVI NLL+NA+KFT   G V ++         
Sbjct: 362 ARKRHLDLWFDIEPSLPDYIVGDRYRLGQVITNLLNNALKFT-ESGSVRISCRSQQDKNG 420

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I I D G GI    +  + + F Q   ++     G GLGL I   ++A   G+  
Sbjct: 421 QNRLLIEITDTGIGIIAQALADIFSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEIT 480

Query: 458 IRSKLREGVEVIAILPNT 475
            +S    G      LP  
Sbjct: 481 AKSTPGRGSTFSIDLPLE 498


>gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88]
          Length = 1308

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 690 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 749

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     ++   V
Sbjct: 750 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 806

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D ++   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 807 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 865

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +              S+ D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 866 TICKSDREQCAADEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 925

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G      
Sbjct: 926 SKRLVNLMGGDVWVTSEYGHGSTFHFT 952


>gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
 gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
          Length = 964

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 19/372 (5%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G    +               +   A +   +  + L      +    +     ++ +  
Sbjct: 332 GSGLAITAGQITLVALAAISLLVTFAVVYFYVQGNLLKRLSRLHEGMATLASGNLSSTIN 391

Query: 178 AIMSMHVLDIS-LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA---------- 226
              S  +  ++    +          +     K N ++   Q E + L+           
Sbjct: 392 DYGSDELHTMAKTLEVFRQTAVVRGQLEEQQVKVNQELQRYQNELEQLVEDRTEKLLEVN 451

Query: 227 -ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +LE      ++ RK+AEE N AKS FLA+MSHE+RTP+N ILG + +++   +    N 
Sbjct: 452 QQLEEEAVRLEKARKQAEEANRAKSTFLATMSHEIRTPMNGILGTTSLLKDTQL----NT 507

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +     I  SG  LL ++N+ILD S+IEAG+    +   S+  I+   I +    AQE
Sbjct: 508 EQQRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQE 567

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           K++ +   +  ++      D   + QV+ NLLSNA+KFT +GG + + V   S +     
Sbjct: 568 KDLSLTYHVADNVPDGSLGDPARLYQVLSNLLSNAIKFTEVGG-IQLQVTANSTQSELIF 626

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D+G GI + +I ++  +F Q   +      G GLGL I   ++    G   + S+L 
Sbjct: 627 SVIDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESELH 686

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 687 KGSTFTFTLPME 698


>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 977

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             + +    + +S    +       + I E +  ++   +    A E    KSRFLA+MS
Sbjct: 293 VRWIHARSVVIRSETGEVIGHVGTVEDITERKYVEAQLSKACDAALESARLKSRFLANMS 352

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ++G + ++   ++        +++   I  S + LL +IN+ILD S+IEAG
Sbjct: 353 HEIRTPMNGVIGMTNLLLDTSLNN----EQRDFAETIRASAEGLLTVINDILDFSKIEAG 408

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           +    +   +L D+V   + +L  +A  K IE+   I+P++   +  D   +RQV+ NL+
Sbjct: 409 KMTFEDLDFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLV 468

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNA+KFT   G V +       +G      + + D G GI+      +  +F Q   +  
Sbjct: 469 SNAIKFTQT-GEVTIRTSCLDDQGSQCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTT 527

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I + ++    G   + S   +G      L
Sbjct: 528 RRFGGTGLGLAICKQLVEKMHGCIGLESTPGKGSIFWFTL 567


>gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 947

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L  + +            I+E + +     + R  A +   AK+ FLA+MSHE+RTPLN 
Sbjct: 529 LRAAEINGRQRLLAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNG 588

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S+++   ++     E    Y+  +  S ++LL LIN+ILD+SRIEAG   + ++A 
Sbjct: 589 IMGLSQLLRTTSL----TEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAF 644

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           S   ++RE   M +  A EK I +       L + +  D   +RQV++NL+ NA+KFT+ 
Sbjct: 645 SPAKLLREVAGMYEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSH 704

Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG V + V               + D+G G++   +  +   F Q   +      G GLG
Sbjct: 705 GG-VTLRVDCLEESATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLG 763

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           L I + +    GG     S L +G   I  LP  R L     +  E+ 
Sbjct: 764 LAICRRLSELMGGSIRAESSLGQGSRFIVELPFGRYLGTQDTEETETA 811


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 18/383 (4%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R     G +  G     +   +      E         L + + I + +       ++  
Sbjct: 96  RRRFWEGAVISGEDVAAVLAGKTICREGELPLFQGVRLLWVGVPIRSGNAVTGGVFIYAP 155

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA----EKD 222
             P+   +    +  +  L    A     +L    + +  L        +  A     + 
Sbjct: 156 LAPLEARVRGLEVTLVAALLGGAALAGLLSLFVARHFSQRLVAMEKVAEAMAAGDYAARA 215

Query: 223 DLIAELEVA-------KSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +  + EVA       K  ++  ++ AE    + A+  F+A++SHELRTPL+ I G++E 
Sbjct: 216 VVTGQDEVARLAVSLNKLAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEA 275

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I     G +  E  K Y+  I    + L  L +E+LDL R+E G  ++ +  + L +I  
Sbjct: 276 ILD---GMVTPEEMKLYLDTIREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIAS 332

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +     Q   +   +    ++ P    V  D+  + QVI+NLL NA +FT  GG V + V
Sbjct: 333 QVAARFQAAPEASKLHFHVEVSPRSL-VLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRV 391

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             ++     ++++D GPGI   E+P +   F +   A      G GLGL I + I+  HG
Sbjct: 392 E-SAPEEVVLTVQDTGPGIPPEELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHG 450

Query: 454 GQFLIRSKLREGVEVIAILPNTR 476
           G+  ++S+  EG      LP  +
Sbjct: 451 GRVEVQSRPGEGSTFKVTLPAAK 473


>gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
 gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
          Length = 912

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 17/288 (5%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELR 261
           +        + + ++ I   E+A  +++  + +AE           AK +FL++MSHE+R
Sbjct: 360 RDITDQKKIETQLNEAIVFAEMATEIAEIAKTKAESSTQIAETAVKAKQQFLSNMSHEIR 419

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI+GF++V+    +        KEY+  I  SG  L+ LIN+ILDL++++AG+   
Sbjct: 420 TPMNAIVGFTKVLLKSELTA----KQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMVF 475

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380
            +    +   +   + + + +  EKN+++    D ++  V   D   + Q+ILNL+SNAV
Sbjct: 476 EKIPFKMELSISAMLHLFETKILEKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNAV 535

Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G+++V+V   S          SIKD G GI+E +I  +  +F Q S        
Sbjct: 536 KFTGK-GKIYVSVRLLSNNDDSASVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYG 594

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           G GLGL I + ++ + GG   + S++ EG      L   R      E+
Sbjct: 595 GTGLGLAIVKQLVESQGGSIHVTSEINEGSTFSFTLNFQRTSQQATEE 642


>gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 9/269 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    E +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  + Y+  +  + + LLNLI++ILD+S+IEAG  EL+   + +  + RE I   
Sbjct: 379 --DEIELRQAYMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATF 436

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +  +  +E+          + AD+  + QV+ N ++NA+KFT   G + ++       
Sbjct: 437 SHKKHDGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTK-GSITLSYTLNDDG 495

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI   +   +   F +      S  QG GLGL I QS++   GG+  + 
Sbjct: 496 QVRFCVTDTGKGIPAEQCHDIFNRFVKLD----SFVQGAGLGLSICQSLVERMGGKIGVE 551

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S + +G       P T           E+
Sbjct: 552 SCVGKGSCFWFTHPFTSATQSASTLVTEN 580


>gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 931

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 14/338 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           LS+ AL  F L           V  +         V       M  T +     +   L 
Sbjct: 171 LSLFALCFFYLRTIRETIRRLSVPIMLLSRAADRAVKGARRIRMKDTNVVELHSLGASLS 230

Query: 209 KSNVKILSCQAEKDDLIAELEVA-KSLSDETR---KRAEEENLAKSRFLASMSHELRTPL 264
           K    +     E+   I ++  A ++  D      +RA+E   AKS FLA+MSHE+RTP+
Sbjct: 231 KFANDMHELVDERTIEITKVNKALEAEIDRAEAFARRAKEAEEAKSNFLANMSHEIRTPM 290

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+G + V+    +    N+  + Y+  +    + L+ LIN+ILD S+IEAG+ E+  S
Sbjct: 291 NGIVGMNTVLRETPL----NDMQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENS 346

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
           A  LI+++ E   +  + A +K I++    D  +S  V+ D   ++QV+ NL++NA+KFT
Sbjct: 347 AFDLIEVLEEVSSLFGMTASQKGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFT 406

Query: 384 AIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G + + +    G        I I+D G GI E     +  +F Q   +      G G
Sbjct: 407 EE-GEIEIGLRIDEGGPLDSVANIWIQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTG 465

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           LGL I+Q ++   GG   I S+   G +    +P +R 
Sbjct: 466 LGLVISQRLVELMGGTIGIESESGVGSKFWIQIPLSRA 503


>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
 gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1046

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 25/267 (9%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E N AK  FLA+MSHE+RTPLN I+GF+++++            +E+I  I  S  +LL
Sbjct: 374 QEANEAKDLFLANMSHEIRTPLNGIVGFTQLLKST----NPTPDQEEFITVIENSSDNLL 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            ++N+ILDLS+I+A + EL     + I+     I     RA EK+IE+   IDP L + +
Sbjct: 430 AIVNDILDLSKIKADKIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPL 489

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEI 417
             D   + Q+I+NL+SNA+KFT+  G + V +   +   +      S++D G GI E + 
Sbjct: 490 IGDPTKISQIIVNLISNAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEEQK 549

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR- 476
             +   F Q  ++      G GLGL I+  + A  GG+  I S+  EG      L   + 
Sbjct: 550 DKIFDPFSQADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEEGEGSVFFFSLTLQKG 609

Query: 477 ---------------VLNFIPEDNHES 488
                          V   +P+ N ES
Sbjct: 610 ESASVLPRPVMNGFTVATVLPDKNTES 636


>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1104

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 16/264 (6%)

Query: 230 VAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             +  +++     ++ AE+   AKS FLASMSHE+RTP+N +LG   +I+   +      
Sbjct: 569 QQRIETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQLDL---- 624

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K +I     S Q LLN+IN+ILD S+IEAG+ ++     +L  ++ E +    L+ ++
Sbjct: 625 QQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKVEQ 684

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
            N ++       ++S + +D   +RQ++ NL+ NAVKFT   G V +T      T G   
Sbjct: 685 NNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTID-GEVVITARIDETTDGSFL 743

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             SI D G GI   +  ++  SF Q   +      G GLGL I + +     G+  + S 
Sbjct: 744 QCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNSM 803

Query: 462 LREGVEVIAIL---PNTRVLNFIP 482
             EG      +   P       +P
Sbjct: 804 QGEGSTFSFTVQIQPRLSKEQDLP 827


>gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 633

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+ A     E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++ +      + 
Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY G I  + + LL LIN+ILD+S+IE+G Y+   + +    ++ E   + +LR +
Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +             D+  + QV+ NL+ NA+KFT+  G + +          Y  
Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      +  QG GLGL I + I+   GG+  ++S+  +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 618 GSVFWFTLP 626


>gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 916

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 161/371 (43%), Gaps = 18/371 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  L L   G     Y +++ S  LLIA  +       L     ++     +  +   
Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASL-LLIAAGLCLTGLLALRMGRTINRPLSQIKQAVAQ 207

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231
           +   H+                + I              Q   D    ++          
Sbjct: 208 LKDGHLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQ 267

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+
Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYL 323

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+ 
Sbjct: 324 GTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELV 383

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407
                 +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI+D
Sbjct: 384 SLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQD 443

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E
Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSE 503

Query: 468 VIA--ILPNTR 476
                 LP TR
Sbjct: 504 FWISLRLPKTR 514


>gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1954

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 168/414 (40%), Gaps = 40/414 (9%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +LT +   +  IA+ ++ ++  M    +   
Sbjct: 1103 LNAVVLPVLFEGQVTAVIELASFSRFSEIHLTFFDQLSESIAIVLNTIAASMRTEELLKQ 1162

Query: 167  FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L TQ   +   +      A  L  +          L ++N   L  +AE   L
Sbjct: 1163 SQSLAEELQTQQKELTGTNQRLEQQAQSLKASEELLKSQQEQLQQTN-AELQEKAELLAL 1221

Query: 225  IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++  
Sbjct: 1222 QNWEVERKNQEIEQARRSLEEKAEQLSLSSKYKSEFLANMSHELRTPLNSLLILAKLLAD 1281

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 L  E   EY   I  SG  LL LIN+ILDL++IE+G   +    IS  ++ R+  
Sbjct: 1282 NPEQNLT-ERQVEYAATIFSSGNDLLELINDILDLAKIESGTIAVDIEPISFSELGRDLE 1340

Query: 337  IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394
               +  A  +N++   +    L      D K +RQ++ NLL+NA KFT   G V +TV  
Sbjct: 1341 RSFREVAINRNLDFQVQFSELLPARFHTDPKRLRQILKNLLANAFKFTEA-GHVRLTVEP 1399

Query: 395  --------------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
                                          + D G GI   +   +  +F Q        
Sbjct: 1400 AVAGWSADQTFLNQAARVAPRGETGVIAFRVSDTGIGIPLDKQRIIFEAFQQADGTTSRR 1459

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLNFIPE 483
              G GLGL I++ I    GG+  + S++  G      LP      +R+    P+
Sbjct: 1460 YGGTGLGLSISREIARLLGGEIRLESQVGRGSTFTLYLPQLESPTSRIAEPPPD 1513


>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 723

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 11/250 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E    AE  N AKS FLA+MSHE+RTP+N ++G ++V+    +     E  + Y+
Sbjct: 199 ERQLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMADVLRDTDL----TEDQRLYV 254

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ LL +IN++LD S+IEA + +L      L   ++E I++LQ  A+EK +E+ 
Sbjct: 255 DTIKNSGEALLVIINDVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMA 314

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405
              D  + + +  D   +RQV+ NLL NAVKFT+  G V V V     +        I+I
Sbjct: 315 LDYDLFMPTTLVGDPGRIRQVLTNLLGNAVKFTSD-GHVLVRVTGVPDKETGKVQVNIAI 373

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA   +  +   F Q          G GLGL I+Q ++    G   + S+ + G
Sbjct: 374 EDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGLGLAISQRLIQMMEGDIWVTSEEQAG 433

Query: 466 VEVIAILPNT 475
                 LP  
Sbjct: 434 SCFGFKLPLE 443


>gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 989

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 10/271 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +    +            I+E +  +   +E RKRAE  + AKS FLA+MSHE+RTP+ 
Sbjct: 553 AVSSVLLADREIFTGIIQDISERKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMT 612

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF++++        + E+       + R+G++L+ +IN+ILDLS+IEA + EL +  
Sbjct: 613 AILGFTDILLNNLRKKEDIES----ANIVKRNGEYLIGVINDILDLSKIEARKLELEQVR 668

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           ++ I+++R+ + ++Q++A  K +E+    D  +   +  D   +RQ+++NLL NA+KFT 
Sbjct: 669 VNTIELIRDIVALMQIKADLKELELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTD 728

Query: 385 IGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V +                 + D G GI+E  +  +   F Q   +      G GL
Sbjct: 729 S-GYVELRTRTIHLEDGFAQLQFDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGL 787

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL I++ +    GG+  + S +  G      
Sbjct: 788 GLAISKRLSEMLGGRIHVTSTIGSGSTFTIS 818


>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1261

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 23/313 (7%)

Query: 194  ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
               +         +   +  I+   A + +   E +  +    + ++ AE  N +KS FL
Sbjct: 713  IGLIYIMDVAPLEINLDHEMIMKIFATRTEAELERQHFEITLRQAKEAAEAANRSKSTFL 772

Query: 254  ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            A+MSHELRTPLNAILGFS+++        +    K+ +  IH SGQHLL LIN++LDLS+
Sbjct: 773  ANMSHELRTPLNAILGFSQLLSRSIYLSGDE---KDSLEVIHSSGQHLLTLINQVLDLSK 829

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
            IEAGR ++      L  +++    M   +A +KN+E+     P +   ++ DE  +RQ++
Sbjct: 830  IEAGRMKMQLRKFDLFHLLQSLERMFTQKANDKNLELKFDCHPDIPQLIYTDETKLRQIL 889

Query: 373  LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--------------IKDNGPGIAEGEIP 418
            +NLLSNA+KFT   G + + V       + IS              +KD G GIA  E  
Sbjct: 890  INLLSNAIKFTPR-GEIILRVYPRWSNLEAISSSRLPAGTYALSFEVKDTGVGIAPDECK 948

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +  +F Q  ++ + A++G GLGL I+Q  +   GG+  + S L  G     ++P     
Sbjct: 949  YLFQAFVQT-LSGQQAQEGTGLGLKISQQFIHLIGGEISVESDLGRGTTFQFMIPVEISE 1007

Query: 479  NFIPEDNHESTQY 491
            + I   +H S+++
Sbjct: 1008 DEI---SHTSSEH 1017


>gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1072

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + A + N  KS+F+A++SHELRTP + ILG +++I           + ++    I 
Sbjct: 681 RQAEESAIQANKLKSQFIANISHELRTPCHGILGMTQIILD---SKELTPSQRDNAETIK 737

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S  +L++LI++ILD S+IE+G+  L  S+  L+ +V + +      +  K I++   + 
Sbjct: 738 KSTDNLVSLIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMG 797

Query: 356 ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKDNG 409
              P    ++ D K ++Q++ NL+SNAVKFT  G   + ++  + SG       S++D G
Sbjct: 798 REYPVPPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTG 857

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI       +   F Q   +      G GLGL I + ++   GG     SK  +G    
Sbjct: 858 IGIPHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFW 917

Query: 470 AILPNTRVLNF-IPEDNHESTQY 491
             L         +P     + Q+
Sbjct: 918 FSLKLLIAAPNYLPSSVPPANQF 940


>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1127

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    E  + AEE   AKS FLA+MSHE+RTP+N ++G   ++    +    +
Sbjct: 528 ITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGLLMNTKL----D 583

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET +        S + LL LIN+ILD S++EA + EL     +L D +      + ++AQ
Sbjct: 584 ETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQ 643

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE+           + AD   +RQ++ N++ NAVKFT+  G V +    T       
Sbjct: 644 EKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFTSK-GHVLIKASLTLVDKVNA 702

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GI   ++  +  SF Q   +      G GLGL I Q + +  GG+  ++
Sbjct: 703 RLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLCSLMGGKIDVK 762

Query: 460 SKLREGVEVIA 470
           S L  G     
Sbjct: 763 SDLGHGSTFTV 773


>gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha]
          Length = 848

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 17/370 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + L               ++ LLIA+ +   +   L  +  ++     +  +   
Sbjct: 48  LGWVEVELS-HNGMLLRGYRSMFASLLLIAIGLMFTAALALRISRTINSPIGQIKQAVAQ 106

Query: 179 IMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +   ++           L  + +        +     +    I     E    +  +E+ 
Sbjct: 107 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEEMQHSIDQATEEVRQNLETIEIQ 166

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+
Sbjct: 167 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RQLDYL 222

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S  +L  +INEI D S+IEAG+  L     +L D++++ + +    A  K +E+ 
Sbjct: 223 GTIEKSADNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELV 282

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--YISIKDN 408
                 +  ++  D   ++Q++ NL+SNA+KFT  G                  IS++D 
Sbjct: 283 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDT 342

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E 
Sbjct: 343 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 402

Query: 469 IAI--LPNTR 476
                LP TR
Sbjct: 403 WISLNLPKTR 412


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 12/284 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
               T  L   N ++     + +    ELE  +    ++ ++  + +  KS FLA+MSHE
Sbjct: 455 LKMQTEELTTINERLEERTRDAEQKTHELEKVQVELRQSAEQLRQSSNYKSEFLANMSHE 514

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  SE++       L+++   EY   IH SG+ LLNLIN+ILDLS++EAG+ 
Sbjct: 515 LRTPLNSILILSEMLAENHENHLSDDEL-EYAKVIHDSGEDLLNLINDILDLSKVEAGKM 573

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
           +L    + + +I +    +    A +K +E+   +   L+ +   D K   QV+ NLLSN
Sbjct: 574 DLWFREMDVYEIPQHIQNLFMPIANQKGLELSVDVANDLAEIFHTDVKRFHQVLNNLLSN 633

Query: 379 AVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           A+KFT   G V V V            S     +S+ D G GI + +   V  SF Q   
Sbjct: 634 ALKFTEE-GSVTVKVDRARITPAMRQLSDTWITVSVTDTGIGIPKNKQNIVFESFQQADG 692

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           A      G GLGL I + +    GG   + S   +G      LP
Sbjct: 693 ATVRKYGGTGLGLSICREVTKLLGGWITLSSTEGQGSTFTVYLP 736


>gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 939

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 391 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 446

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +  I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 447 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 503

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L D+V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 504 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 563

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 564 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 623

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 624 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 656


>gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
 gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
          Length = 856

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +    + L    +++AE  + AKS FL+ MSHE+RTP+N I+G +EV         N   
Sbjct: 320 KERQIQRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEV---GRRYTHNPAR 376

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  I  S QHLL+L+N+ILD+S+IE+G+ EL E +     + +    +   +A+E+
Sbjct: 377 IENCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARER 436

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-- 403
            IE    ++ +L   +  D   + Q++ NLLSNA+KFT  GG+V +T             
Sbjct: 437 GIEYNVYVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWI 496

Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D+G GIA+  +  +   F Q    +     G GLGLPI +  +   GG   + S+
Sbjct: 497 GFEVRDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQ 556

Query: 462 LREGVEVIAILPNT 475
           +  G      +P  
Sbjct: 557 VGSGSCFRVEIPFK 570


>gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 1068

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +  I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L D+V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 633 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 753 LGMAISRNIVNLMDGTIKVDSTLHKGTKITVTI 785


>gi|270157008|ref|ZP_06185665.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
 gi|269989033|gb|EEZ95287.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
          Length = 868

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 14/296 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   N  I    A+    +  LE         +K+ EE++  KS F+A+MSHE+RTP+
Sbjct: 253 ETIRDLNHHIEVATADLQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPM 312

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF+ V+    + PL      +Y+  I  S Q LL +IN+ILD S+I+AG+  L   
Sbjct: 313 NGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCI 368

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
            +++   + E + +    A +K I++    + ++   V  D   ++Q I NL++NAVKFT
Sbjct: 369 PLNIRHCIDEVLALAAPNAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFT 428

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V +               I+I D G GI+  +   + T+F Q   +I     G G
Sbjct: 429 -DHGYVLIRTNVEQETEKDYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSG 487

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           LGL I + +     G+    S+L +G    A +   +++ +      E  Q   +A
Sbjct: 488 LGLVICKKLCEEMKGRITFASELNKGSVFTAYIKVEKLVAY----EVERNQVHPFA 539


>gi|255589130|ref|XP_002534846.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223524480|gb|EEF27535.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 534

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 20/293 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMS 257
             L +   ++   + +      EL +A     E        ++RAE+    KS FLA+MS
Sbjct: 18  RLLERQTEELREQERQVRRRTNELALANDALQENEERLYQAKQRAEDATRQKSEFLANMS 77

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL  ++G               E+ +E I     + Q LL +IN++LD S+IEAG
Sbjct: 78  HEMRTPLAGVIGMLGFALR---DTGLKESTREQILRGQANAQSLLAIINDLLDFSKIEAG 134

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  +     +L + +     + + +A   ++    ++DP L   V  D   +RQ+++NL+
Sbjct: 135 KLTIENIDFALDEAISHVATLFEEQAGAHSVGFAVQLDPDLPRFVVGDPTRLRQILVNLV 194

Query: 377 SNAVKFTAIGGRVHVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            NA KFT   G V V V   +              S++D G GIA   +P +   F Q  
Sbjct: 195 GNAFKFT-ESGSVTVHVERRAEDQHDRAGRNMIRFSVQDTGIGIAPDALPRLFQKFEQAD 253

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                   G GLGL I + ++   GG   + S    G     +LP    +   
Sbjct: 254 ATTTRRYGGTGLGLAICRQLVELMGGTIGVASTPGVGSTFSFVLPLADGVQPT 306


>gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 938

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    ++   + ++ AE+ ++AKS FLA+MSHE+RTPLN ++GF++++    + P+  
Sbjct: 526 IHEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLSPV-- 583

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+   + S   LL +IN+ILD S+IE+G+ EL   + +L ++  + + ++  +AQ
Sbjct: 584 --QEQYLRIANESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIITFQAQ 641

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRG 400
            K++++   I   L   ++AD   +RQV++NLL NAVKFT   G++ +    VG      
Sbjct: 642 SKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFT-DHGQIELKIKFVGVKDSGH 700

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI   +   +  +F Q          G GLGL I+  ++   G +  +
Sbjct: 701 FVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGSKLQV 760

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
           +S   +G      L         P
Sbjct: 761 KSSPGKGSTFYFDLRLRVGYEENP 784


>gi|148240608|ref|YP_001225995.1| hybride histidine kinase [Synechococcus sp. WH 7803]
 gi|147849147|emb|CAK24698.1| Hybride histidine kinase [Synechococcus sp. WH 7803]
          Length = 891

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 11/292 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            F+  +K+   +AEK  L AE +  ++     +K A   + AKS FLA+MSHELRTP+NA
Sbjct: 333 FFERRLKMTLLEAEKLRLEAEHQSMRA--HRAKKTAFLASKAKSEFLANMSHELRTPMNA 390

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G+SE++  E+     ++   + +  I  SG+HLL LIN +LDLS+IEAG+  +   + 
Sbjct: 391 IIGYSEMLIEESEELEPSDFVVD-LEKILSSGRHLLGLINGVLDLSKIEAGKMTVYNESF 449

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           S+  ++ +     +  AQ+   +   +         + D   +RQ ++NL+ NA KFT  
Sbjct: 450 SINKVLDDVCATAEPLAQKNKNQFVCERPSRDDDMAFLDVTKVRQSLINLIGNACKFT-E 508

Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G V ++    +          S+ D G G++E +   + + F Q   +      G GLG
Sbjct: 509 NGSVRLSCRLLNSEAGIPQVSFSVIDTGIGMSEKQQAKLFSDFSQADASTTRQYGGTGLG 568

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE--DNHESTQY 491
           L +++ +    GG   ++S L  G     ILP         E  D H ST+ 
Sbjct: 569 LSLSRKLSRLMGGDISVQSSLGVGSTFTMILPRYASSEVSEETSDTHASTEQ 620


>gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 587

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 181/438 (41%), Gaps = 16/438 (3%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG--EV 103
              +  + L    VA+   +             T     +      +++  ++       
Sbjct: 138 MNPAVRMGLLAFGVASATLYAAVLAFAADTLARTGVTLLSMEEERYRLLARNMSDVISRH 197

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
                 + +      L          G    E + +      L ALS +A  +       
Sbjct: 198 RRNGAVMFISPAVENLL-GTSVAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEF 256

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                        +            A            +     ++             
Sbjct: 257 R-----------LRRDAGGDTRGPHHAVDFIWVEMRCRPL-DAAARTPSGAEQEVVAVMR 304

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            + + ++ +   +  R  AE  + AK+RFLA+MSHELRTPLNAI+GFSE++  E    LN
Sbjct: 305 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQALVLN 364

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+ SGQHLL+++N ILD+S++E+G +EL+    +    +  C  +L LRA
Sbjct: 365 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRA 424

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +E  +++   +   L ++  D +  +Q+++NL+SNA+KFT  GGRV V+      +   +
Sbjct: 425 RENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQ-LLL 483

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GIA  ++  +   F Q     +   +G GLGL I +S++  HGG+  I SKL 
Sbjct: 484 RITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLD 543

Query: 464 EGVEVIAILPNTRVLNFI 481
           EG  V   LP   V    
Sbjct: 544 EGTTVSIALPIDCVAAEA 561


>gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
 gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
          Length = 896

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 582

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 22/385 (5%)

Query: 105 VWRIWLLVGQI---AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN--FML 159
            W+  + +G +     G  + LL  +       E ++    +   +      L      +
Sbjct: 44  RWQTSVAMGFVDFGFAGFNFGLLLYLRRNPQKVEIVSTLSLSLSFVLFLAIYLLATNNTM 103

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN----VKIL 215
             ++F         L  + I  + +  I LA +   A   F      L  +     +  L
Sbjct: 104 RLSLFFLLAASGFFLKGRKIGRLWLSGIILAIVAVHASGLFATGYSTLDIATTCVYLIAL 163

Query: 216 SCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
               E  +   E E  +  S+E     ++ AE EN AKSRFL +MSHE+RTP+N ILG +
Sbjct: 164 FFIFENYESFKEKERERKQSEEEALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMA 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +  L  +   ++   I  SGQ LL L+N+ILD S+IEAG+ EL+ +  S   I
Sbjct: 224 QLML---VSRLTEQEQHDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQI 280

Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           V E   +    A+ K + I      P      AD   +RQ++ NL++N++KFT   G V 
Sbjct: 281 VDEAATLFAESAKAKGLVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGS-GFVR 339

Query: 391 VTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +                S+ D+G GI   ++  +   F Q   +      G GLGL I  
Sbjct: 340 IEGREIEPMADASLLEFSVTDSGIGIPPEKLTLLFRPFSQADSSTTREYGGSGLGLSIVH 399

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
           ++    GG   + S+  +G      
Sbjct: 400 NLAKLMGGDAGVESEPGKGSRFWFR 424


>gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
 gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
          Length = 725

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 161/401 (40%), Gaps = 13/401 (3%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
           V      L     +          + +      +  G   + L    P            
Sbjct: 56  VVQLRNYLALHEPDEAALEDARLRFELLYSRLTLLKGGDISGLIASIPLAERLSGKIESH 115

Query: 142 SATL-LIALSISALSNFML------PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
             TL  I      L    L        A+  S   +VV ++     +       L  +  
Sbjct: 116 LETLDAILSEADTLDAETLDRMSRELAALSESTERMVVTINGHLAEASTRERSRLKWLYG 175

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L     ++         ++    +       LE      + T  RAE  + AKS FLA
Sbjct: 176 LLLVLILAMSVAAMMVVTFLIRESRDNAAARRALEALSDELEVTAHRAESASQAKSEFLA 235

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHE+RTPLN ++G SE++    +     +  + Y   IH S Q LL LIN+ILD S+I
Sbjct: 236 TVSHEIRTPLNGVIGMSELLSEHHL----PDGARHYADTIHDSAQRLLELINDILDFSKI 291

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAGR +L   ++SL ++V   + +    A+ K I +   IDP+L   + +D   +RQ++L
Sbjct: 292 EAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWIDPALPTHIVSDPGRLRQILL 351

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA+KFT   G V V+          I + D G GI E     +   F QG  +   
Sbjct: 352 NLLSNAIKFTER-GEVRVSAFVADDGELGIDVVDTGCGIDEQRQAQLFEPFRQGDPSTAR 410

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              G GLGL I + ++    G+  + S+   G      LP 
Sbjct: 411 RFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLPL 451


>gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 597

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 175/384 (45%), Gaps = 4/384 (1%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            ++   D    +        L+G+ A  L               +   IY   T  +   
Sbjct: 176 IRLARLDAGETD-RRAAELALLGEAAGELIIGFDEGGAVSRLVGDRHRIYGLETADLMGR 234

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
                  +     FL      +A +  A   + +   S  G    A   F         +
Sbjct: 235 GLFHRVHVADRPAFLKLVSDTIATNAPACAELRLRIGSAPGAGEYAEPVFNSFEARSRPA 294

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                      D  +     A+ +  E R+ +   +  K+RFLA++SHELRTPLNAI+GF
Sbjct: 295 GDGAGVICFLAD--VTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGF 352

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++  E + P +    +EY   IH SGQHLL ++N ILD+S+IE+G  ++     S  +
Sbjct: 353 SDMLASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQE 412

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +  +C+ M+QL+A++  I +       L  +  D++  +Q+++NLLSNAVKFT   GRV 
Sbjct: 413 LADQCVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVA 472

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V + +  G    I++ D+G GIA  ++  +   F Q S A   A +G GLGL + + ++ 
Sbjct: 473 VRL-YPDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVG 531

Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474
            HGG   + S  + G  V   LP 
Sbjct: 532 LHGGAIAVESAPQRGTCVTVRLPL 555


>gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1180

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 144/283 (50%), Gaps = 10/283 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             L + N ++ S  +E+   +    A L   +   +   +   + + AK++FLA+ SHEL
Sbjct: 442 EQLRRFNDELESQVSERTSELQSSNARLRAREVELEIINEELVQASEAKNQFLANTSHEL 501

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+GFSE++    MGPLN+     Y+ +IH SG+ LL +IN++LD+SRIEAG   
Sbjct: 502 RTPLNAIIGFSELMGNPRMGPLNS-KQHRYVENIHSSGKRLLKIINDLLDISRIEAGMMV 560

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           + E      ++  + +  +   A  K +++     P     +  D   + Q+++NL+ NA
Sbjct: 561 VEEQVFPPREVANQVMAEMTSLASLKGLKLTMDACPDEGQLIRTDRGKLHQMMVNLVGNA 620

Query: 380 VKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT  GG V +++         R   + +KDNG GI   ++  +   F Q    +  A 
Sbjct: 621 IKFTPEGGSVTLSMEINVVSARQRELVVHVKDNGIGIPAADLEKIFEPFVQVHGGLARAY 680

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           +G GLGL + +  +   GG     S+  +G   I  LP   V+
Sbjct: 681 EGTGLGLALTRRQVRMLGGDVSGESREGDGSTFIIRLPFDTVV 723


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 127/262 (48%), Gaps = 11/262 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +  +   +  R +AE  + AKS FLA+MSHE+RTPLN +LG  +++E  +     +
Sbjct: 975  IDERKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLESTS----KD 1030

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                EYI    +S   L  L+ +ILDLS+IEAG+  L E+  S +D+    + + +L  +
Sbjct: 1031 AEQDEYIEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVK 1090

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSG 398
            EK +++   ID  L   +  D+  ++Q++ NL+ NA+KFT   G V V            
Sbjct: 1091 EKGLKLDFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTET-GDVRVEACHLPCSNDDI 1149

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            +     + D G GIA+G I  V   F Q   +     QG GLGL I + ++   GG   I
Sbjct: 1150 QRVLFIVSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAI 1209

Query: 459  RSKLREGVEVIAILPNTRVLNF 480
             S    G      LP       
Sbjct: 1210 DSTEGTGTTFYLSLPLKHSAPS 1231


>gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1]
          Length = 2544

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 18/295 (6%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLN 265
               ++  +  +A    L AE +   + ++  R  K AEE   AKS FLA++SHELRTPLN
Sbjct: 1879 ENRSMVAVQKRALAKALEAETKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLN 1938

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
             ++G SE++    +    N    E    I  S   LL +IN+ILD S++EA + +L   A
Sbjct: 1939 GVIGNSELLRDSEL----NRDQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIA 1994

Query: 326  ISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             +  D+VRE +  +    + +  +KN++I Q I+     ++ D   + QV+ NL+ N++K
Sbjct: 1995 FNPEDMVREVVRAVSYSNREKTSKKNVKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLK 2054

Query: 382  FTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            FT   G + +         ++      ++D G GI   ++  +   F Q   +      G
Sbjct: 2055 FT-EDGSITIGARLDKETQEHATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGG 2113

Query: 438  VGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489
             GLGL I +S++     G+  + S+   G            +      +   ++T
Sbjct: 2114 SGLGLSICKSLIETMMKGKIRLESEENVGTTAWFTVTFEKAKPDVAAGDVQTKAT 2168


>gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 631

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L   A     I  L  A +   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS +
Sbjct: 377 LLILIAAIAYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +        + +  +EY   I  +   LL LIN+ILD+S+IEAG ++   S I +   + 
Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E    ++LR +++ + +         +++ D+  + Q+I N + NA+KFT   G + +  
Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFTQT-GSIRMGY 551

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      + D G G++E +   V   F +         QG GLGL I Q I+   G
Sbjct: 552 RLKDANTICFYVSDTGCGMSEEQCKHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G      LP
Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627


>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
           to ArcB sensor in E. coli [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 896

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 153/342 (44%), Gaps = 21/342 (6%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           S+  L ++ L     +    +   L T + +   +  I     +   ++F   +T     
Sbjct: 442 SMDLLKSYQLLIGNRMWQVELHEPLVTTSWLIYWLAQIVGMLFVWLLVAFLISVTGT--- 498

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                         +  ++        + +++A+E +  KS+FLA+MSHE+RTP+N I G
Sbjct: 499 -----------NVQIREQVARQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKG 547

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
               +    +   + +  + YI     +   LL ++N++LD S++EAG+ +L +  + + 
Sbjct: 548 ----LHYLALQQNDWQQARTYIEQADGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIG 603

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +  E I ++Q     K++EI    D +    +  D   ++QV+LNLL+NAVKFTA  G 
Sbjct: 604 RLAEEVINLIQFEVSVKSLEIKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQ-GS 662

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + + W S    Y+S+ D G GI++     +   F Q   +      G GLGL I + +
Sbjct: 663 ITLKI-WQSKTMTYLSVSDTGIGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKL 721

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +   GG   ++S   +G      LP    L  + +     + 
Sbjct: 722 VELMGGAIDLKSTAGQGSTFTFSLPLNSPLPKVEKSEQSFSD 763


>gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1042

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 183/453 (40%), Gaps = 31/453 (6%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLSLGKK----- 92
            R   ++     + A +   F              P W +    +    + +        
Sbjct: 206 VREKSLIAYVGYIGAVLLWQFVWGGHIQLVFSQGIPSWLVGHSELIFVIIGISSGVFTMT 265

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            + ++      +     LL+ Q   GL C+  L            + +    + + A   
Sbjct: 266 FLETNRHSPTAHPIIKLLLICQGLTGLICFVDLLPSIWKNNLVYGVGLVAILSYIYAGFE 325

Query: 152 SALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203
           +  +NF    Y +F        A+     +   +           +   L   L  F  +
Sbjct: 326 AFFNNFKPARYFIFAWGMLATGAIVGMLSLIGVLPSNDFTTYCFQVGVFLEAGLFSFALM 385

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +   ++     +  + +  +E   +  D  RK A + +  KS+FLA+MSHE+RTP
Sbjct: 386 EKSRSQLESEVEQATNDLRNNVELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 445

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS     E          +E +  ++ +  +LL ++N++LD S+IEAG+  ++ 
Sbjct: 446 LNAILGFS----KELNNASLPTDQQEQVRIVNTAADNLLTIVNDVLDFSKIEAGKLTINN 501

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              S   ++ E + ++   +  K++E    + P    +  D   ++QV+ NLLSNA+KFT
Sbjct: 502 QPFSPNKLLEEMVTIMAKSSHSKHLEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFT 561

Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +  G +  +V             ++I+D G GI+  +   +  +F Q   A+    QG G
Sbjct: 562 SS-GTITFSVRGRALPHGIHEVNMTIEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTG 620

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ ++    G   ++S L +G   I  L
Sbjct: 621 LGLVISRELVRLMNGDLTLKSALGQGSTFIVSL 653


>gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 1239

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 138/253 (54%), Gaps = 6/253 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    ++     + +AE+   AK+ FLA+MSHE+RTP+NAI+GFSE++    M     
Sbjct: 635 ITERTRMENDLKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTEM----Q 690

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y+  I+ S + LL+L+N+ILD +++E G+ EL     SL ++V   +  L ++A+
Sbjct: 691 DEQRRYMNTINNSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAK 750

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            KN+++  ++DP+ +S +      +RQ+++NLL N++KFT   G V + V          
Sbjct: 751 RKNLDLQLELDPNTASYYLGAPDRIRQILMNLLGNSIKFT-EHGYVKLVVKQLDNHELSF 809

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SI D G GI +  +  +   F Q   ++     G GLG  I++ ++   GG+   +S++ 
Sbjct: 810 SIIDTGIGIPQDRLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIG 869

Query: 464 EGVEVIAILPNTR 476
            G     ILP   
Sbjct: 870 SGSCFTMILPLQP 882


>gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 748

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 16/264 (6%)

Query: 227 ELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                  L  E + RAE         +LAK+ FL+ MSHE+RTP+N I+G + +      
Sbjct: 328 MARRNTRLLAEEKDRAERAFAEAQQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALESIG 387

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              ++   +  +  +  S +HLL+LIN+ILD+S+IE+G+ E+      L   +     + 
Sbjct: 388 ---DDGKVRTCLEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVF 444

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           + +A E+N+     ++  +   V  D   + QV+ NL+ NA KFT  GG V + +   + 
Sbjct: 445 RTQASERNVAFDTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLAD 504

Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G GI    +  +  SF QG  ++     G GLGL I +  +   G
Sbjct: 505 AEDGCVWLRFAVDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMG 564

Query: 454 GQFLIRSKLREGVEVIAILPNTRV 477
           G+  + S +  G      +P  R 
Sbjct: 565 GRIRVASVVGHGSSFAVDVPLGRA 588


>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
 gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
          Length = 974

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 8/287 (2%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
             G+  +  +    +          I +   +  + +  +E+     D  RK A E +  
Sbjct: 253 FFGLAESINTMAASMEAAQEDMQAHIDNAIEDLRETLETIEIQNVELDMARKEALEASRV 312

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+ SHE+RTPLN ILGF  +     +    NE  +EY+  I  S Q+LL +IN I
Sbjct: 313 KSEFLANTSHEIRTPLNGILGFINLALKTEL----NEKQREYMETIRDSAQNLLTVINGI 368

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IE+G+  L  + + +   V E + ML   A EKN+++   I+P +   +  D   
Sbjct: 369 LDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPCIPRNLLGDALR 428

Query: 368 MRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSF 424
            +QV+ NL++NA+K++  G  +  +++           +++ D G G+++ E   + ++F
Sbjct: 429 FKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQGIGLSQEEQENLFSAF 488

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            Q   +      G GLGL I + ++    G+  + S   +G      
Sbjct: 489 SQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGSTFWFT 535


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 10/239 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA MSHE+RTP+N ++G + ++    + P      +EY   I +SG  LL LIN+I
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTP----QQQEYTETIRKSGDSLLTLINDI 291

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+ +L + A ++   V + + ++  R   K IE+   ++P +   +  D   
Sbjct: 292 LDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTR 351

Query: 368 MRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLT 422
           +RQ+++NLL NA+KFT  G  V  V+    +          +++D G GI       +  
Sbjct: 352 LRQILVNLLGNAIKFTQSGEVVVNVSAEPFAADTPLYELSFAVRDTGMGIPAERQNRLFK 411

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           SF Q   +      G GLGL I + +    GG+  + S+  +G      +      +  
Sbjct: 412 SFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQGSTFAFTIQAEETEDTT 470


>gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum
            ATCC 12472]
 gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium
            violaceum ATCC 12472]
          Length = 1748

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 153/323 (47%), Gaps = 18/323 (5%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            V A     +     +D      L      +  +   L +    +      +D  I E   
Sbjct: 951  VEADLRALLERGEAMDRVFRVRLPDGEMRYVQVGARLERHGDGVRVTGINRD--ITETRA 1008

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             +    E +++AEE ++ KS+FLA+MSHE+RTP+NA+LG  ++++   +    +E   +Y
Sbjct: 1009 YEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRL----DERQLDY 1064

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +G I  + + LL L+N+ILD S+I+AG+ +L      L  ++RE  ++L     +K++E+
Sbjct: 1065 VGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGNTNDKDVEV 1124

Query: 351  FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRGQYISIK 406
              +++P+L   +  D+  ++Q+++NL  NA+KFT  G  V                I + 
Sbjct: 1125 LFRMEPTLPAMLIGDKLRLQQILINLAGNALKFTTQGQVVLAVRERARREGEVELRIEVS 1184

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GIA  ++  +   F Q   +      G GLGL I++ ++   GGQ  + S+L  G 
Sbjct: 1185 DTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLRVESQLGCGS 1244

Query: 467  EVIAIL--------PNTRVLNFI 481
                 L        P  ++   +
Sbjct: 1245 RFWFDLTLGMAADQPLAQLPEPL 1267


>gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2]
 gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2]
          Length = 1023

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 10/258 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E+ K++EE   AKS FLA+MSHE+RTPLN ILGF E+++   + P      +EY+  I 
Sbjct: 378 QESIKKSEEATKAKSLFLANMSHEIRTPLNGILGFLEILKTTDLTP----EQEEYVDTIS 433

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S ++LL ++N ILD+S+IE+ +  + E     +D     + +    A  K+I+   +I 
Sbjct: 434 QSAKNLLQIVNNILDISKIESNKVTIEEIEFKALDEFESTLEIFATPASHKHIQYVTEIS 493

Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGP 410
           P++ S+   D   ++++I NL++NA+KFT   G + V +            Y  ++D G 
Sbjct: 494 PNMPSILKGDILKIKEIITNLINNAIKFTPENGIISVKILLQEIINNKAKIYFEVRDTGI 553

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G++E +   +  +F Q   ++     G GLGL I +S +   G    + S++ +G     
Sbjct: 554 GMSEAQKAKIFEAFTQADASVTRKYGGTGLGLTIVKSYLEMMGSHINVESEINKGSRFYF 613

Query: 471 ILPNTRVLNFIPEDNHES 488
            +    V++  P     S
Sbjct: 614 TINLE-VIDSKPRYKQNS 630


>gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 696

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               F  ++     Q E   L+           E  + A++EN AK+ F++++SHE+RTP
Sbjct: 285 GRLWFFEDITSFHSQQETLALL------NQALKEKSEIAQQENQAKTVFISNISHEIRTP 338

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +  ILG +E++    +    N   K+ +  I RSG  LL ++N +LD S+ + G+ EL  
Sbjct: 339 MTGILGITELLLNTPL----NPDQKDSLELIQRSGDKLLKIVNHLLDFSKADTGKIELES 394

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
              ++ +++ + + +L+    +   E+     P+   +   D   + Q++ NL+SNA KF
Sbjct: 395 IPFNMQELLNDLVSLLRTEILKNKNELNILFPPNFPKLLKGDPVRIGQILTNLVSNATKF 454

Query: 383 TAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G V V           +S    + D G GI   +  +V   F Q   +I     G 
Sbjct: 455 TKE-GTVEVGFHILEKTNSELSFRTWVFDTGIGIPPTKFNSVFEPFVQSDKSITRHFGGT 513

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           GLGL I + ++   GG+  + S+   G      L      +   E   E+++
Sbjct: 514 GLGLSITKKLIELMGGKIHVESQPGIGTRFWFELKLEIPESIDEESFTENSE 565


>gi|317496915|ref|ZP_07955245.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895927|gb|EFV18079.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 462

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 7/298 (2%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +     TA  F   I   +     K    +A      ++ +      +   K+AE+ +LA
Sbjct: 138 MFAFFVTAGFFVLTIIGIILVLLWKARKAEAVAKLAASDTQKLNDKLEIALKKAEDASLA 197

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+RFL +MSH++RTP+N ILG ++++E E  G    E   E++  + +SG  LL +IN +
Sbjct: 198 KTRFLNNMSHDIRTPMNVILGHAQLMENELKGKGMPEML-EHLEKLQQSGNLLLAIINNV 256

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+++IE+GR EL E+   +  + +    +   +A++KNI +   ++     V  D   +
Sbjct: 257 LDMAKIESGRMELDENYCRIEAVWKSLFAVFDEKARKKNIALHYTMNVEHEHVLTDVTKV 316

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTS 423
           +++++N+LSN++K+T +GG V V V   S        + I + D G G+++  +  +  +
Sbjct: 317 KEILVNILSNSIKYTPVGGSVMVDVDELSCDESGYMIERIRVSDTGIGMSQDYLKKIFEA 376

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F +     KS   G GLG+ I +  +   GG   + S+L +G      L   R+ +  
Sbjct: 377 FTREKNTTKSKIAGTGLGMSIVKKYVDLLGGTINVESELGKGSTFTVTL-KHRIADES 433


>gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
 gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
          Length = 1091

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             +S +     + +  ++ ++      D+  AE    + L  +    AE  N AKS FL+
Sbjct: 526 HWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAEKARQERLLRDALTSAEAANKAKSEFLS 585

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTP+NAI+G S +     +        ++    I  S ++LL LIN+ILD+S+I
Sbjct: 586 RMSHDIRTPMNAIIGMSTI---GQLKAGAPNRVRDCFEKIDSSSRYLLTLINDILDMSKI 642

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373
           E+G+  L++      + + E   ++  + +E+ I+        +   +  DE  + Q+++
Sbjct: 643 ESGKIVLAKRKFDFSEFINEINTIIYPQTRERGIDFVVHHHEPMERFYIGDELRLNQIMM 702

Query: 374 NLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNAVKFT  GGR+ V +          Y+  S+ D G G++E  +  +   F Q + 
Sbjct: 703 NLLSNAVKFTTPGGRITVDIRELKRENGLAYLGLSVSDTGIGMSEEFMKKIYQPFEQENP 762

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
                + G GLGL I  +I+   GG   + S+   G      +P   V +   E
Sbjct: 763 GTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEKNCGTTFELSVPLEPVYDTEEE 816


>gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
 gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
          Length = 911

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 8/310 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
              +A           ++     ++    +   ++         ++     E  + +  +
Sbjct: 184 LARLAAGMTPEPLPMPVEAEFVQLVQRLNTLRDHLANAHDDLQTQVEQATQELQESMETI 243

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           EV     D   +RA + N AKS FLA+MSHE+RTPLN I+GF  ++    +    N   +
Sbjct: 244 EVQNIELDLAHRRALDANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRSEL----NARQR 299

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  + R+  +LL L+N++LD S+IEAGR EL    + ++ +V E + +   +AQ+KN+
Sbjct: 300 EWLDHVRRACDNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNL 359

Query: 349 EIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR--GQYIS 404
           ++     D     ++ D   +RQV+ NL+ NAVKFT  G  +  V+V  TS       +S
Sbjct: 360 QLLGLVYDDVPGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVS 419

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+++     +  +F QG  + +    G GLGL I + ++   GG+  + S+  +
Sbjct: 420 VSDTGIGLSQACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQ 479

Query: 465 GVEVIAILPN 474
           G      LP 
Sbjct: 480 GSTFFFTLPL 489


>gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 909

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 152/326 (46%), Gaps = 17/326 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   + L    VV       I+   +  I      A  +           ++  +I    
Sbjct: 182 LARQILLLSILVVFVGQLLLILLPVIRSIQKLQQGAAKIGDGNLEYRLNIQTEDEIQELA 241

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              + +   L  +    +  ++ A+  N AKS FLA+MSHELRTPLN ILG++++++   
Sbjct: 242 EAFNRMAGTLAESYRSLELKKELADTANRAKSEFLANMSHELRTPLNGILGYAQILQR-- 299

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +  ++ +  IH+ G HLL LIN+ILDLS+IEA R EL +S       ++  + +
Sbjct: 300 -DKTLTDKQQDGLRIIHQCGSHLLTLINDILDLSKIEAQRMELYKSDFHFPAFLQSVVEI 358

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++RA +K I    +    L   VWADEK +RQV++NLL NA+KFT  GG V  T+    
Sbjct: 359 CRIRADQKGISFIYQPTSELPIGVWADEKRLRQVLINLLGNAIKFTEKGG-VRFTISSVD 417

Query: 398 G-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                             I D G G+++ ++  +   F Q    +K   +G GLGL I+Q
Sbjct: 418 QLLTNESNQKPIHKIRFQIIDTGIGMSQEQVAKIFLPFEQV-GEVKKQSEGTGLGLAISQ 476

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            I+        ++S++ +G      L
Sbjct: 477 RIVQLMDSTIQVKSEIGQGSTFWIDL 502


>gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
 gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
          Length = 909

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL+ + I+ L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+     D  +KRA+E  
Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+    + T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTDLSATQTDYLQTIERSANNLLTIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L     +L + + E I++L   A EK +E+   +   +   V  D 
Sbjct: 346 DVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422
             ++QVI NLL NAVKFT  G   + V +     R   + ++  D G GI+E +   +  
Sbjct: 406 LRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTGIGISERQQSQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I Q ++   GG     S+L  G      +
Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515


>gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1120

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 12/260 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +      ++ AE+   AKS FLASMSHE+RTP+N +LG   +++   +    ++    
Sbjct: 588 ETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTKL----DQQQMH 643

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +I     S Q LLN+IN+ILD S+IEAG+ ++ +   +L  ++ E +    L+A++ N  
Sbjct: 644 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKAEQNNTI 703

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405
           +       ++S + +D   +RQ++ NL+SNAVKFT   G++ VT      T G     SI
Sbjct: 704 LILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFD-GKIVVTAKIDETTDGTSLVCSI 762

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   +  T+  SF Q   +      G GLGL I + +    GG+  + S L EG
Sbjct: 763 IDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTSMLNEG 822

Query: 466 VEVIAIL---PNTRVLNFIP 482
                 +   P       +P
Sbjct: 823 STFSFSIKIKPKLSKQQDLP 842


>gi|332702581|ref|ZP_08422669.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 500

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 42/372 (11%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W   L+   + +   W  L ++  G+  P  L +     ++IA  +  +    L      
Sbjct: 11  WLRLLIAILVVLVAAW--LRILLIGSHQPRVLFVTLYPAVMIAAMVGGIYA-GLLATALA 67

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           SF   V    T  ++   V+D    G+   +    + +   L +                
Sbjct: 68  SFLAAVWLEPTGFLIIEDVIDWLGMGIFIISNIMISLLAESLLR---------------- 111

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                        R +AE  N AKS FLA+MSHELRTP+N I+G  E+     +    + 
Sbjct: 112 ------------ARAQAEAANKAKSDFLANMSHELRTPMNGIIGSIEL----ALMKEPST 155

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           + + Y+    +S  +LL+++N+ILDLS+IEAG++EL      L   V + +  L+  A+ 
Sbjct: 156 SVRNYLDMGRKSALNLLDIVNDILDLSKIEAGKFELQRIPFDLDQCVTDIVEALEGIAER 215

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399
           K +++ Q ID  +   +  D   ++QV+ NL+ NA+KFT   GR+ V V           
Sbjct: 216 KGVDLRQGIDSEVPRRLVGDAVRLKQVLTNLIGNAIKFTDQ-GRILVNVEDAGQGSDGRV 274

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G GIA   I  V  SF Q +I   +   G GLGL I++ ++    G+  + 
Sbjct: 275 RIRFSVRDTGIGIAPDRIKHVFDSFYQANIENLAKYGGTGLGLAISKRLVEMMDGEIGVE 334

Query: 460 SKLREGVEVIAI 471
           S L EG      
Sbjct: 335 SSLGEGSHFFFT 346


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 162/374 (43%), Gaps = 15/374 (4%)

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS--NFMLPY 161
            +W+I ++   I++GL +   +      +   YL +  +  LL+     A++  N+    
Sbjct: 297 RLWQIHIIYSVISLGLIFIYNSSWFYERYIDHYLLLASTIILLLHAIPIAITKKNYYAKL 356

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
             F      +  +    +    + +          L F   +        + +    AE 
Sbjct: 357 FSFGLSILAIAGMHDILVYRFELENWYQRFYPWGMLLFILSLA-------LILERRFAET 409

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L+ E        +      +E +  K+ FLA+ SHEL+TPLN I+G +E +     G 
Sbjct: 410 RRLLQEY---NQKLETKNAALQEMDQLKNEFLANTSHELKTPLNGIIGIAESLIDGATGE 466

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L+  T    +  I  SG+ L  L+N++LD S ++  +  L    + + +I    +++ + 
Sbjct: 467 LSQPTSSN-LSLIVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGMREITEVVLLLSRP 525

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
               K +++  ++  S+  V ADE  ++Q++ NL+ NA+KFT   G + V+         
Sbjct: 526 LVGNKKLQLINQVSSSIPPVDADENRLQQILYNLVGNAIKFTER-GTIKVSAEVV-NYYL 583

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I++ D G GI   ++  +  +F QG  +I     GVGLGL + + ++  HGG   + S 
Sbjct: 584 KITVSDTGIGIPPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKLVQLHGGDIDVEST 643

Query: 462 LREGVEVIAILPNT 475
              G      LP +
Sbjct: 644 PNLGSRFSFTLPIS 657


>gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
 gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
          Length = 793

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE       E  K AE+ N AKS FLA MSH++RTP+NAI+G + + +   
Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                +E   + +  I+ + + LL+LINE+LD+S+IE+GR  LSE   ++ +++++ ++M
Sbjct: 311 ---DEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q   + K   +   +      +V  D + ++QV++N+LSNA+K+T   GR+ + +   +
Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKA 427

Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       +DNG G+    +  +   F + S       QG GLG+ I+  I+   G
Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S+  +G      +P     +  P+D  E
Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHELRTP+  I  +SE +        N ET K+++  I +    +  L+++
Sbjct: 342 MRKQFVANVSHELRTPITTIKTYSETLLD----VDNEETKKQFLSVIIKECDRMTRLVSD 397

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L LSR+++G   L+   ++L ++VR     L++ A++KN  +   I   + +   D   
Sbjct: 398 LLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKNQTLSCSILQDIVA-MVDRDK 456

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV++NL+SNAV +   GG+++V V         I +KDNGPGI E ++P +   F + 
Sbjct: 457 IEQVLINLISNAVTYVQEGGQINV-VLQKEEDKIKIIVKDNGPGIPEEDLPRIFERFYRV 515

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL IA  I+  HGG+ L+ SK+  G     +LP  
Sbjct: 516 DKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTFTVVLPAK 563


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 16/319 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLIAELEVAK 232
           +    ++  + L +++       LS +      L    +  +L+       +   L+  +
Sbjct: 273 MGAVRLVRGYPLAVNITITEDLYLSSWRSTVRLLGGIGLVSLLALCGAFILMAIILKRRE 332

Query: 233 SLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +++    ++ AEE N AKS FLA MSHE+RTP+N ILG +E++    +    + + + 
Sbjct: 333 QDAEQALTLKREAEEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDTPL----DASQRT 388

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y G+++    HL+ +INEILD S++E+G  E+  +      ++ E I + +  A  K ++
Sbjct: 389 YAGNVYNGAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEVIGLHRNGATAKQLQ 448

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQY 402
           I  +I P+ +  V AD   +RQV+ NL++NA+KFT   G + V                 
Sbjct: 449 IRTEIAPAAALLVSADASRIRQVLGNLINNAIKFTPA-GAITVRFVALPDPADATQVQLE 507

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D+G GI+      +   F Q    I     G GLGL I + ++    G     S +
Sbjct: 508 FSVADSGIGISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDI 567

Query: 463 REGVEVIAILPNTRVLNFI 481
             G      +P   V   +
Sbjct: 568 GAGTRFSFRIPARMVEQPV 586


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 160/383 (41%), Gaps = 17/383 (4%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W+   +           L  ++              +       + S L+     +A   
Sbjct: 240 WKRASVASLGGDFAPGQLAAVLAILAQPSFKQVTLNNDIAKKLKAKSCLA----MWATVG 295

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            F   +V+++  + +   V    +  +            + L ++N   +      D   
Sbjct: 296 DFPLGLVSVARTSDVLGSVSPWMMTFVAGGFSLALLAGLWQLMRANSDRMKLAGRLD--- 352

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E      +  + ++ AE  + AKS FLA+ SHE+RTP+N I+G   ++    +G   ++
Sbjct: 353 -EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLL----LGTRLSD 407

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E++  +H S   L+ +IN+ILD S+I+AG++ L      L  ++   +  L +  Q+
Sbjct: 408 KQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQ 467

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYI 403
           K +E+   + P +   +  D   ++QVI NL+ NA+KFT  G   V V     S    YI
Sbjct: 468 KGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYI 527

Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+KD G G++  +   +   F Q   ++     G GLGL I+  ++   GGQ  + S 
Sbjct: 528 RFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVESI 587

Query: 462 LREGVEVIAILPNTRVLNFIPED 484
           L +G E    +    V    P  
Sbjct: 588 LGKGSEFFFEIGLA-VAEQAPRA 609


>gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
 gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
          Length = 896

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 13/282 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   K   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGG------RVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           T  G        + ++     +   S     IS+KD G GI++ +   +  +F Q   A 
Sbjct: 630 TEKGSVSLHFDSIEISNLSHDMQSISNDWMKISVKDTGIGISKEQHQLIFEAFQQADGAT 689

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                G GLGL I +      GG   + S + EG      +P
Sbjct: 690 IRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1442

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA++SHE+RTP+NAILG + ++   ++ P      ++++  I   G+ LLNLIN+ILD
Sbjct: 818  EFLATISHEIRTPINAILGMTSLLLDTSLDP----QQQDWVQTIRYGGEVLLNLINDILD 873

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
             S+IE+ + EL E   SL  +V E + ++  +AQ K++E+   +DPSL  ++  D   +R
Sbjct: 874  FSKIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLR 933

Query: 370  QVILNLLSNAVKFTAIGGRV-HVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            Q++ NLLSNA+KFT  G  V  V  G      +   + ++D G GI   ++  +   F Q
Sbjct: 934  QILANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKPFSQ 993

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
               +I     G GLGL I+Q +    GG   + S+  +G      +P  R    +
Sbjct: 994  VDSSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLKRPDQEL 1048


>gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 657

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 204 TYHLFKSNVKILSCQAEK-----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              + +  V  +  Q +K        I E +  +    +  ++AE  N  K  FLA +SH
Sbjct: 242 ANRVAQMRVVEIEWQGKKGYLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSH 301

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG+S+++    +   N +   + +  I R+      LI+++LD+SRI  G+
Sbjct: 302 ELRTPLNPILGWSKLLRTRKL---NQDKVDQALETIERNASLQAQLIDDLLDVSRILRGK 358

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L    + L+ +++  I  ++L A  K+IEI  ++D ++  V  D   ++QV+ NLLSN
Sbjct: 359 LNLQTLRVDLVRVIQAAIETMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSN 418

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKFT  GGR+ V +     + Q I + D G GI+    P +   F Q +     +  G+
Sbjct: 419 AVKFTPKGGRITVRLQEIDSQAQ-IQVSDTGQGISPDFFPYIFDYFRQENSTTTRSVGGL 477

Query: 439 GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLGL I + ++  HGG+    S+ + +G      LP    +   P +  +S+
Sbjct: 478 GLGLAIVRHLIELHGGRIEAESEGIGQGATFTVTLPL---MPDSPINTQKSS 526


>gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 739

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N +KS FLA+MSHE+RTP+ AILGF++++  +       E  +     IH++G++LL LI
Sbjct: 341 NRSKSEFLANMSHEIRTPMTAILGFTDILINDLNQTEEIEVVR----TIHQNGEYLLGLI 396

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILDLS+IE G+ ++     S  +IV + I +LQ+RA  K I +    +  +   +  D
Sbjct: 397 NDILDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTD 456

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTV 420
              +RQ+++NL+ NA+KFT  G  ++ + +     +  +  +  + D G GIA  +I  +
Sbjct: 457 PARLRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGIAAEQIENL 516

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +      G GLGL I + ++   GG   + S + +G     I+P   V   
Sbjct: 517 FLPFTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIPVGEVDPT 576


>gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
 gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
          Length = 883

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWIIISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1315

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 18/263 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            + I + +  +    E +  AE  N AKS FLA+MSHELRTPLNAI+GF+++++  +  P 
Sbjct: 825  EDITDRKQIELALTEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPA 884

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   Y+E +  I+RS +HLL LIN++LDLS+IEAGR  L+++   L  ++R+   + Q++
Sbjct: 885  D---YQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIK 941

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395
            A++K +++       +   V  D   +RQV++NLLSNA KFT  GG + V V        
Sbjct: 942  ARDKGLQLLFDYSDQVPQYVQTDAVKLRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGE 1000

Query: 396  ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                           I+D G G+A  E+ ++  +F Q S   K  ++G GLGL I++  +
Sbjct: 1001 TPTANKPEEITLQFEIEDTGAGMAAEELESIFDAFIQ-SKTGKQHQEGTGLGLSISRKFV 1059

Query: 450  ANHGGQFLIRSKLREGVEVIAIL 472
               GG   + S++ +G      +
Sbjct: 1060 QLMGGDLTVASQVDQGTVFRFEI 1082


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 157/369 (42%), Gaps = 16/369 (4%)

Query: 111 LVGQIAIGLCWTLLTLVE---PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
           +      G  W L+T+       T             LL  +    +  F+    V    
Sbjct: 347 MAIARINGPDWLLVTVYPKKLVITAARSTAHFVLIIGLLSLIVEMLMLYFVTLNKVVNPL 406

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
                A +     +  ++      + +        +         +I       +  ++E
Sbjct: 407 KMFGRASAEIGQANYQLVARGDLELPSHRKDEMGILANVFKSMAGRIFEYSTTLEQKVSE 466

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                S   E+ KRAE  + AKS FLA MSHE+RTP+NAI+G S+++   ++    ++  
Sbjct: 467 ---RTSELVESHKRAEIASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTSL----DKRQ 519

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++++  +  S   LLN IN++LD S+IEA +  L E    L D++R    +   +AQ K 
Sbjct: 520 RDFMEKVLSSSDVLLNTINDVLDYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQSKG 579

Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----Y 402
           +E+   +D  +   W  D   + Q+++NL SNAVKFT   G V + V     +GQ     
Sbjct: 580 VELLLDVDEKVPFHWIGDPTRLGQILINLASNAVKFTEK-GEVVIRVKLLEQQGQLSTLR 638

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            SI D G GI    +  + + F Q   +I     G GLGL I + +     G+  + S++
Sbjct: 639 FSIIDTGIGIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDSEI 698

Query: 463 REGVEVIAI 471
            +G +    
Sbjct: 699 NKGSQFHFT 707


>gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1176

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 25/335 (7%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
                       V A       S+          L   L+ +      L +S   +    
Sbjct: 310 WMMLFAAEVLFTVFAFVLYWNFSLKRQVSRRTAQLNQELAKYDRAEKELRESRAMLEQSN 369

Query: 219 AEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV- 273
            E +  ++E         +     ++ A+    AKS+FLA++SHE+RTPL+ I+ F+E+ 
Sbjct: 370 VELEHRVSERTRDLQAINAELQLAKEAADAATTAKSQFLANISHEIRTPLHGIMAFAELA 429

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  E   P        Y+  I +S + LL +IN++LD+S+IEAG  EL ++   L D+V 
Sbjct: 430 LLKEKTPPH------RYLRAILQSSRALLEIINDLLDVSKIEAGHLELEQAPFMLDDVVH 483

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               +    A    IE+   +DP++  ++  D   ++Q+I+NL++NAVKFT  GG++ VT
Sbjct: 484 HVCTVALHNAHAGGIELVVDMDPNMQIALIGDAGRLQQIIMNLVTNAVKFTGPGGQICVT 543

Query: 393 VGW------------TSGRGQYIS-IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +                 R Q I  ++D G GIA   +  +   F Q   +      G G
Sbjct: 544 LKQGHAEPLPSDTCPEQRRVQIICFVRDTGVGIAPEFLGQLFQPFRQVDASTTRRHGGTG 603

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           LGL I + ++    G+  + S+   G      +P 
Sbjct: 604 LGLCICRQLVEMMHGEIWVESEPNVGSTFAFSIPL 638


>gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 850

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLLKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +G I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + Q    E        I+      V  D   ++QV +NL+SNA+K+T 
Sbjct: 633 FNLSELVDNLITLTQPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+D+G G++      +   F +      +  QG G
Sbjct: 693 DGGNIIFSIEEKPNGFSELGCYEFTIEDDGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 753 LGMAISRNIVNLMNGNIKVDSTLHQGTKITVTI 785


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 93/408 (22%), Positives = 171/408 (41%), Gaps = 26/408 (6%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
           +    +K    ++++ +   G+I +G+ W   ++   G            A L       
Sbjct: 212 LARIPLKNLLSHLFKPFARPGRITLGVVWKGASVASLGGDFAPGQLAAVLAILAQPSFKQ 271

Query: 153 ALSNF-----------MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              N            +  +A    F   +V+++  + +   V    +  +         
Sbjct: 272 VTLNNDIAKKLKAKSCLAMWATVGDFPLGLVSVARTSDVLGSVSPWMMTFVAGGFSLALL 331

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              + L ++N   +      D    E      +  + ++ AE  + AKS FLA+ SHE+R
Sbjct: 332 AGLWQLVRANSDRMKLAGRLD----EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIR 387

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N I+G   ++    +G   ++   E++  +H S   L+ +IN+ILD S+I+AG++ L
Sbjct: 388 TPMNGIIGMCNLL----LGTRLSDKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSL 443

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L  ++   +  L +  Q+K +E+   + P +   +  D   ++QVI NL+ NA+
Sbjct: 444 EIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAI 503

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V V V + S          S+KD G G++  +   +   F Q   ++     
Sbjct: 504 KFTER-GEVAVCVDFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFG 562

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           G GLGL I+  ++   GGQ  + S L +G E    +    V    P  
Sbjct: 563 GTGLGLAISSHLIELMGGQLSVESNLGKGSEFFFEIGLA-VAEQAPRA 609


>gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 931

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL + + + +++L   A EK +E+   I   +    
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + +  +D G GIAE +  
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 520


>gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 456

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHELRTPL +I GF E +    +   N +T  +++  I    +
Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRNGAID--NPQTRDKFLDIIDFESE 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +       I L + + + + ++   A+ KNI + + ++ +  
Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDL 336

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  ++    Q+++NL+ N +K+T  GG V V+     G    I ++DNG GI++  IP 
Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVEDNGIGISKENIPR 395

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +      G GLGL I + I+ +  G+  + S++  G + I   
Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 1721

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 130/301 (43%), Gaps = 38/301 (12%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             H   +  K+L+  A+    I +    +    +  +RA     AKS FLA+MSHE+RTP+
Sbjct: 1237 RHYSDAEKKLLTVFAQMLVNIRKRHEIEQSLHQATQRARAATQAKSEFLANMSHEIRTPM 1296

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ILG + ++    +        + +   +  +G  LL +IN+ILD S+IEAG+ EL   
Sbjct: 1297 NGILGMTSLLLETELTG----EQRRFAEIVRNNGDALLEIINDILDFSKIEAGKLELEMV 1352

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              SL  ++      L ++A +K IE+   I+P     V  D   +RQ++ NL+ NA+KFT
Sbjct: 1353 DFSLNKLLEGLAGALSVQAHKKGIELIYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFT 1412

Query: 384  AIG-----------------------------GRVHVTVGWTSGR----GQYISIKDNGP 410
              G                                 V V  +           S+KD G 
Sbjct: 1413 EKGEVFVQIKTGEAVAADTVAETEAGAPDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGI 1472

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI+  +I T+  SF Q   +I     G GLGL I++ +    GG+  + S    G     
Sbjct: 1473 GISPEKIETIFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTFAF 1532

Query: 471  I 471
             
Sbjct: 1533 T 1533


>gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 1070

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 138/284 (48%), Gaps = 13/284 (4%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             +     +    L K+ +  +    EK   I   +       E  + AE  + AK+ FL
Sbjct: 510 IGSFIPLEWDGTKLVKALLASMDVSQEKKAEIESHK----ALKEAYRAAENASRAKTEFL 565

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           ++MSH++RTP+NAI+G + +         + +   E +G I +S +HLL LINE+LD++R
Sbjct: 566 SNMSHDIRTPMNAIVGLTAIAGANI---ESQDKVVECLGKITKSSRHLLGLINEVLDMAR 622

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372
           IE+GR  L+E   SL ++V   + + +    E + ++   I+     +V  D   ++QV 
Sbjct: 623 IESGRMSLAEEDFSLPELVDNLLTLTKPVIDEHHHQLEVHIEHIEHEAVCGDSLRIQQVF 682

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +NL+SNAVK+T  GG + +T+               SI+DNG G+       +   F + 
Sbjct: 683 VNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRA 742

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                +  QG GLG+ IA++I+    G   + S   +G ++   
Sbjct: 743 DDHRTTKVQGTGLGMAIARNIVNLMNGDIQVESAPNKGTKITVT 786


>gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
 gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
          Length = 901

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 9/281 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L+    +++       DL  +L+  +      + RAE+    KS FLA+MSHE+RTP+
Sbjct: 494 NSLYNEFNELVGFLGIASDLTEQLKR-EQALAHAKDRAEKAVKVKSEFLANMSHEIRTPM 552

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N + G  ++++ E +        K  +     S ++L  +IN+ILD S+IEAG+  L  +
Sbjct: 553 NGLFGVMQLLKQENLSSDG----KNLLDKALYSAKNLTVIINDILDFSKIEAGKLTLELT 608

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              L +++      L + A  K I++  +I+      + D   +RQ++LN++SNA+KFT 
Sbjct: 609 NFKLSELIEHINSDLSVNAFNKQIDLTFEINVKHDFWFGDPIRIRQILLNIISNAIKFTN 668

Query: 385 IGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            GG +V V    TS   Q IS+ D G GIA   I  +   F Q   +      G GLGL 
Sbjct: 669 TGGVKVLVNALPTSNGLQ-ISVIDTGIGIAPDAIERLFNRFEQADKSTTRKYGGTGLGLS 727

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIP 482
           I+QS++    G+  + S+  +G     ++P     V    P
Sbjct: 728 ISQSLIDLMQGEISVTSEENKGTSFSIMIPLVQAHVQQNTP 768


>gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 594

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE   +  ++ F+A++SHELRTP++ + G+SE I  +  G   +E  KE    I+ 
Sbjct: 357 RDMTEERKLDKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAG--TDEEKKEMASVIYD 414

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+NE+LDL+R+EAG  +L+     +   ++  I   Q  A+EK I +   +  
Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHDLQS 474

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               +  D   + QV+ NL+ NA++ T   G V V +  +  RG +I ++D+G GI E +
Sbjct: 475 KGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKV-LERSDERGLFIEVRDSGSGIPEED 533

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P V   F +   A      G GLGL IA++I+  H G   ++SK   G      +P 
Sbjct: 534 LPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIPR 591


>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 779

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + ++ AE  + AKS FLA+MSHE+RTPLN ++G  ++    T+    N
Sbjct: 270 IKDRKNKEIELRKAKEEAEAASKAKSEFLANMSHEIRTPLNGLVGMVDL----TLLTDLN 325

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE +         LL +IN+ILD S++EAG+  +      + +++ E I      A 
Sbjct: 326 CEQKENLMTAKSCTNSLLKVINDILDFSKLEAGKLVIENINFDIKNLIEEIIKANSSTAL 385

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399
            K IE+      ++   +  D   +RQV+ NL++NA+KFT   G + + V          
Sbjct: 386 AKQIELNYTFSSTIPQFLLGDPNRLRQVLNNLINNAIKFT-EHGEISLKVKNIETIDEHV 444

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               SI D G GI+E  I T+  SF Q   +      G GLGL I++ +    GG  L++
Sbjct: 445 KLEFSITDTGIGISEENINTIFESFSQVDGSSTRTVGGTGLGLAISKQLTEIMGGNLLVK 504

Query: 460 SKLREGVEVIAIL 472
           SKL +G     +L
Sbjct: 505 SKLGQGSSFYFVL 517


>gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1039

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 12/257 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 712

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I  +   LL LI++ILDLS+IEAG  EL+ S I L +++RE      LR +
Sbjct: 713 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVK 769

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
              +++           + ++  + Q+++NL++NA+KFT  G    +  G+       Y 
Sbjct: 770 TDAVKLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTEKGS---IRFGYEMRENELYF 826

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + +   +   F +      S  QG GLGL I +++M + GG+  + S+  
Sbjct: 827 YVADTGCGIPKDKQQNIFGRFVKL----NSFAQGTGLGLSICKTLMDHMGGRIGVESEEG 882

Query: 464 EGVEVIAILPNTRVLNF 480
           +G      LP    +  
Sbjct: 883 KGSTFWFTLPYKPAVKE 899


>gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
 gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
          Length = 896

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|167624483|ref|YP_001674777.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167354505|gb|ABZ77118.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 579

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 8/299 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             +   L+           +  K L    E      + +   + + E ++RAE    +  
Sbjct: 160 ANILGGLTLVIDAPRTWQNTIEKQLLLFCEMISAAHKRQQLLARTIEEKQRAESSERSTR 219

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A ++HELRTPLN +LG +E++    + P      ++ +  +H+SG+ L  +IN++LD
Sbjct: 220 DFVAMINHELRTPLNGLLGSAELMSDTQLTPH----QRQLLNTMHQSGELLRVIINDLLD 275

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           LS++ AG  ++ E + S   +      + + R  E  +         +   +  D   ++
Sbjct: 276 LSKMSAGMLQIVEISFSPRQVCTMIYDIFKQRTAEFGLSFAFNYHTEVPERLLGDPDRIK 335

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+ +NL+ N++KFT   G++ V + W  G+    S+ D G GI   ++ T+   F Q + 
Sbjct: 336 QLFVNLIGNSIKFT-QSGQITVDIEWQDGQF-CFSVTDTGCGIPADKVDTLFDPFTQVNN 393

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDNHE 487
           +     +G GLGL I + ++    G   + S+L +G +    LP         P   HE
Sbjct: 394 SSNRVYEGTGLGLAICKHLVDEMHGDLTLTSELDKGTQFNIRLPLKLAPPSQKPNHTHE 452


>gi|166713792|ref|ZP_02244999.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 746

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 14/285 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L ++       Q E           +      ++ AE   LAK  FLA+MSHE+RTPLN
Sbjct: 49  RLEEAERARERLQQELQRHG----KLEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLN 104

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL  + 
Sbjct: 105 GIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITT 160

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
            +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+KFT 
Sbjct: 161 FNLRELLNGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTE 220

Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V + +               ++D G GIA  +   +  SF Q   +      G GL
Sbjct: 221 R-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGL 279

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           GL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 280 GLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 324


>gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
 gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
          Length = 896

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDTKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 1127

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 203/457 (44%), Gaps = 23/457 (5%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK---KVMNSD 97
           + ++L     I     L+ A +  W T    +     + LA     +       +    D
Sbjct: 454 YAQALSHF--IALAVALVTAPLIAWKTGGRFYTARPFVPLATDHQLVGCSICEHRFEPED 511

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL-------- 149
           +     Y   I  L   +                   ++L  +  A LL AL        
Sbjct: 512 VTHCPAYDGAICSLCCSLDARCEDACKPGAGYQEQMQQFLGRFLPAPLLSALRSRLGHFL 571

Query: 150 -SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
             +  ++ F       + F   V +L+   ++S+ +  +    ++ T +  + ++  H  
Sbjct: 572 SLLVVINGFSALLLSLIYFKTPVASLAEATLLSVTLWKVFFILVIVTGVICWLFVLAHES 631

Query: 209 KSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   +  S +  +   + I   E       + +++AE  N AKSR+L  +SHELR+PLNA
Sbjct: 632 RVVAEEESRRQTRLLTEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNA 691

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG+++++E +   P      KE +G I RSG++L +LI  +LD+S+IEAGR +L    +
Sbjct: 692 ILGYAQLMENDDSVP---PHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQV 748

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            +  ++ + + M +L+A+EK +         L   V  DEK +RQ+++NLLSNA+K+T  
Sbjct: 749 RIGLLMEQLVTMFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLLSNAIKYTDQ 808

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V +T+ +   +    +++D G GIA   I  +   F +     +S   G GLGL I 
Sbjct: 809 -GSVSLTLRYR-SQVAEFTVRDTGEGIAAENIERIFRPFERIRNPGQSRT-GTGLGLTIT 865

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           + +    GG   + S+  EG      L  + + +  P
Sbjct: 866 RLLTEIMGGDISVESEPGEGSVFKVSLMLSSLHSASP 902


>gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 456

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHELRTPL +I GF E +    +   N E   +++  I    +
Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +       I L + + + + ++   A+ KNI + + ++ +  
Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDL 336

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  ++    Q+++NL+ N +K+T  GG V V+     G    I ++DNG GI++  IP 
Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVEDNGIGISKENIPR 395

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +      G GLGL I + I+    G+  + S++  G + I   
Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEVGRGTKFIIKF 448


>gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 1045

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DNL 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  +   LL LIN+ILDLS+IEAG  E +   + +  ++R+      L+ +
Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             +++I  K       ++ D   + Q+++NLL+NA+KFT   G +            +  
Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GLISFGYKLRDDNTLWFY 833

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E +   +   F +      +  QG GLGL I + I+    G   + S   +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGK 889

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G +    LP        P +  +
Sbjct: 890 GSKFWFTLPFQPKKELFPSEEQK 912


>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 778

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 11/274 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E ++ ++   + R  A+  N AKS FLA+MSHE+RTPLN ++G            L ++
Sbjct: 376 TERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGL----MQLLQTTLLDD 431

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E +    RS   L  L+ ++LD+S+IEAG+ ++ E   SL ++      +  + A +
Sbjct: 432 EQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFAVNADK 491

Query: 346 KNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           KN+ +   IDP L  +       +RQ++ NL+ N++KFT   GRV + +   +       
Sbjct: 492 KNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQ-GRVRLEMAPIAPAKNGEL 550

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D G GI E ++  +   F Q   +     QG GLGL I + ++    G   + 
Sbjct: 551 RLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGHIYME 610

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           S L +G  V  +LP   +    P    E      
Sbjct: 611 SVLGKGTAVHVVLPFKSLQELPPARMREKADITG 644


>gi|220933274|ref|YP_002512173.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994584|gb|ACL71186.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 866

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/477 (21%), Positives = 170/477 (35%), Gaps = 50/477 (10%)

Query: 20  GDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM----W 75
                    +       I                L +++   +  +F       +     
Sbjct: 5   RQRPSGSGQASPSALAMIRQRLASRADSEHQQALLRLVIGLAVFVYFHSPLFAAVVDPPA 64

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
                      L+    +  + +   E    R  L +     G       L         
Sbjct: 65  LEYARLGSTLFLAFSLGIFLAILLWPEPSPSRRLLGLAGDMTGAS-----LSLLLGGEAG 119

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              +     +++         ++    V       VV   +    +  V   SL  +L  
Sbjct: 120 APILAVYLWVIVGNGFRYGLPYLYAATVMALAGFAVVFTLSPFWSTHPVFSFSLMLVLIL 179

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +   +   L                                 RA E N AK RFLA+
Sbjct: 180 VPLYTATLLRTLKG----------------------------AIDRANEANQAKPRFLAN 211

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLN ++G S+++    +    N+  ++    IH S + LL LI  ILD+SRIE
Sbjct: 212 MSHELRTPLNGVIGMSDLLMDTPL----NDEQRDLGRSIHTSARVLLGLIENILDISRIE 267

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           +G+         L  +V   + M + +A+ K + +  +IDPS+  ++  D   +RQV++N
Sbjct: 268 SGKLSSEREDFDLHRLVHGTLGMFEAQARGKGLHLGARIDPSVPFALHGDALHLRQVLVN 327

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           L+ NA+KFT   G+V ++V                ++D G GI E     +  SF Q   
Sbjct: 328 LIGNALKFTER-GQVELSVQLLEAPAEDAVRLRFKVRDTGIGIPEEAQARIFESFEQADT 386

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            +     G GLG  IA+ ++   GG   + S++ EG      LP  R    IPE+  
Sbjct: 387 TVTRRYGGTGLGTTIARQLVQLMGGTMGLESRVGEGTTFYFDLPLGR--QAIPEEAS 441


>gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 633

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+ A     E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++ +      + 
Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY G I  + + LL LIN+ILD+S+IE+G Y+   + +    ++ E   + +LR +
Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +             D+  + QV+ NL+ NA+KFT+  G + +          Y  
Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      +  QG GLGL I + I+   GG+  ++S+  +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 618 GSVFWFTLP 626


>gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 602

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + +  +  L  A   S   + +        +M V  ++    L T              S
Sbjct: 280 LYSAFSEALLSACAGSPEHLELLRGGSYRSAMVVPLVARGQTLGTLTFVLAESDRRYGPS 339

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           ++ +    A +  L  +     +     R RAE  N AK  FLA++SHELRTPLN+ILGF
Sbjct: 340 DLSLAEDLAGRAALAFDNARLYAAEQRERNRAEVANRAKDEFLATVSHELRTPLNSILGF 399

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++      P   E     +  I R+ +    L  ++LD+SRI  G+ +L+   + +  
Sbjct: 400 TQLLRRHAGDP---ERLAVALDAIERNAKAQARLTEDLLDVSRIITGKLKLTIQPVRVNA 456

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +V   I  ++  A+ KNI +      +  ++ AD   ++QVI NLLSNA+KFT +GGR+ 
Sbjct: 457 LVDAAIETMRTAAEAKNIALSAIYPEAPCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIR 516

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V+V   +G+  +I++ D+G GIA   +P V   F Q   +      G+GLGL I + ++ 
Sbjct: 517 VSVERRAGQ-VHIAVADSGMGIAAEFLPFVFDRFRQADSSSTRTFGGLGLGLAIVRHLVE 575

Query: 451 NHGGQFLIRSK-LREGVEVIAILPNTR 476
            HGG     S    +G   +  LP   
Sbjct: 576 LHGGSVEAHSAGPNQGATFVVSLPLAP 602


>gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E   + I  +  SG HLL+L+N+ILD S+IE  + EL+ ++    D++         
Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396
             ++K ++     + +  +++  D+  +RQ+I NL+SNAVKFT   G + +    T+   
Sbjct: 500 ICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTPK 558

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I ++D G GI +  +  +   F Q   +      G GLGL I + +     G  
Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618

Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490
            + S   +G     +LP            + +P D ++ T+
Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 154/361 (42%), Gaps = 24/361 (6%)

Query: 116 AIGLCWTLLTLVEPGTWTPE---YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
            IG+ +    +               +     L+IA+ +S + +  +   +         
Sbjct: 290 VIGMLFVGTPVAPYEALNSNIKVQTVVIAFLGLIIAMIVSIMLSKSIIRPM--------- 340

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
             + +              +   +L  F  ++    K + +I     +      EL  + 
Sbjct: 341 -ENLKEAAQNFSEGRYGTKVPVDSLDEFGELSKIFNKMSDEISISHTKLQKHAQELSKSY 399

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E        +  KS  +A  SHELRTPL ++ G+ E++   TMG + NE   + + 
Sbjct: 400 DELKE-------LDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEV-NEAQSKCLS 451

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             + +   L  LI+ +LDLS+IE G  ++ +  +++   V E    L+    EKNI +  
Sbjct: 452 IANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRLV- 510

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             D    S++ D+  + QVI NL+ NA+KF    G +++   +      ++ ++D+G GI
Sbjct: 511 -KDVQNLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGA-YEDEGNIHLIVQDHGAGI 568

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++  +   F Q   + K  + G GLGL + +SI+  H G   + S+L +G     IL
Sbjct: 569 PEKDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVIL 628

Query: 473 P 473
           P
Sbjct: 629 P 629


>gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 733

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++  +
Sbjct: 323 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 382

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        ++++  ++ SG+H++ L+NEILD S+IE G++EL  S   L  I+     
Sbjct: 383 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 438

Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V V +   
Sbjct: 439 IYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 497

Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +   +Y   I ++D+G GI +  +  +   F Q          G GLGL I + I     
Sbjct: 498 NIGDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 557

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           G   ++S++ +G             +   ++ ++  + K Y
Sbjct: 558 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596


>gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 635

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 165/319 (51%), Gaps = 7/319 (2%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V L    + + L    +++  +             +     +  +   +  +LS   
Sbjct: 304 LTFVGLGLAALCLPLIMAIMLNREINKR------VVQEAALDRESDKVRMEHAALLSISE 357

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  +   +L    +     + RAE+ N AKS FLA+MSHELRTPLNAILGFSE+I  + +
Sbjct: 358 ELANERVKLRRTNAELVAAKSRAEQANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMI 417

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G  + + Y  Y  D+H+SG HLLN++N+ILD++RIEAG+ EL E  I+L  ++   ++ +
Sbjct: 418 GN-DIDRYASYAADVHKSGTHLLNIVNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDV 476

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           Q +A    + +          +  D+  ++Q+++NLLSNA+KFTA GGR+ ++       
Sbjct: 477 QSQALAGGVLLAAPARNLGVVLRGDKGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDG 536

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G  + I+D G G++  EI   L  F Q    +    +G GLGLP+A  +   HGG   + 
Sbjct: 537 GLCVKIRDTGIGMSGDEIRQALELFRQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVD 596

Query: 460 SKLREGVEVIAILPNTRVL 478
           S   EG EV    P  RV+
Sbjct: 597 SIPGEGTEVSVRFPAKRVV 615


>gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
 gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
          Length = 896

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFNPIETNNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S L EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V + IP +  E T
Sbjct: 749 ATVDDVIPAEVVEET 763


>gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18]
          Length = 1285

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 672 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 731

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              +E +  +H     LL +I++ILD+S+IEA R  +     S+   V
Sbjct: 732 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAV 788

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 789 FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 847

Query: 392 TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+  +               + D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 848 TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 907

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   + S+   G +    
Sbjct: 908 SKRLVNLMGGDVWVTSEFGHGSKFHFT 934


>gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides
            brasiliensis Pb03]
          Length = 1406

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 790  EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 849

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +              +E +  +H     LL +I++ILD+S+IEA R  +     S+   V
Sbjct: 850  LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAV 906

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               +  L ++A EK + +  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 907  FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 965

Query: 392  TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            T+  +               + D G GI E ++  +  +F Q   +      G GLGL I
Sbjct: 966  TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 1025

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAI 471
            ++ ++   GG   + S+   G +    
Sbjct: 1026 SKRLVNLMGGDVWVTSEFGHGSKFHFT 1052


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L   N ++     + ++   ELE AK   +E   + E  +  KS FLA+MSHELRTP
Sbjct: 460 SEELRMINEQLEERTKDAEEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTP 519

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++E      L+ +  +EY   IH SG+ LL LIN+ILDLS++E+G+ ++  
Sbjct: 520 LNSILILSEMLEENAAKTLSEDE-EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLL 578

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
           + +++ ++  +        A++K +++       +   +  DEK  +Q++ NLLSNA KF
Sbjct: 579 AEMNMSELPDQIERNFSHVAEQKKVQLKINKAQDVPNIIHTDEKRFQQIVKNLLSNAFKF 638

Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   G V V++   +                  I++ D G GI + +   +  +F Q   
Sbjct: 639 T-ESGSVTVSIQRVADHRLTTAMRTVDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADG 697

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           A      G GLGL I        GG   + S++ +G      LP
Sbjct: 698 ATVRKYGGTGLGLSICSEFAKLLGGWISLSSEVGKGSTFTLYLP 741


>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 741

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/454 (22%), Positives = 165/454 (36%), Gaps = 31/454 (6%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITL--AVYAANLSLGKKVMNSDIKIGEVYVW---- 106
           PLF  + A +  +         ++ +           +L        +       W    
Sbjct: 151 PLFFAVAATLYVFLMIALGLLGFAFLKAKKIFRPFMGALIIITAAPVVANLAYIGWGVTV 210

Query: 107 ----RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFML 159
                         I L W L+      T       ++ +     +L+      +S    
Sbjct: 211 FGFDPTPFTFAVSLIALSWLLVNNSMMDTAAQGRTLMFYATQDPVILVDAGGQFVSANPA 270

Query: 160 PYAVF----------LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
              +           +   P V  L    + +  +       +   A            +
Sbjct: 271 ARQLIGDRIPDYGEPIEQLPEVGPLVKDLVKAGGLGKPGPIRLAGRAFDPRAVPIDSPIQ 330

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + + +L       D I E E A     E    AE  N AK++FLA++SHE+RTPLN +LG
Sbjct: 331 AQIPLLGWCISLVD-ITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLG 389

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            + V+    +    +E  +E++  I  SGQ LL  I ++LDLS++EAG+  L     +L 
Sbjct: 390 MASVLGETKL----DEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLR 445

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           + +     +   RA+EK I +  ++   L  V   D+   RQV+ NL+SNA+KFT   G 
Sbjct: 446 NALEGARALFSARAKEKGIGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTET-GA 504

Query: 389 VHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           V ++           + + D GPGI       +   F Q          G GLGL I++ 
Sbjct: 505 VTISAAPAENGSILLVRVSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQ 564

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +    GG   +     +G      LP        
Sbjct: 565 LCHLMGGSLQVADDEPQGATFEIRLPLLPANEAQ 598


>gi|169335410|ref|ZP_02862603.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258148|gb|EDS72114.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
          Length = 526

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +   +  +LE       +  K A+  N AKS FL+SMSH++RTP+NAI+G +E+ ++  
Sbjct: 257 TDLRKMQTKLEKQSVELQKALKEAKNANRAKSEFLSSMSHDIRTPMNAIMGMTEIAQMNI 316

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   N +   + +  I  SGQHLL LIN++LD+S+IE+G+  L   + SL +++   + +
Sbjct: 317 L---NTDKVNDCLKKISISGQHLLGLINDVLDMSKIESGKMTLRNDSASLPEVLENVVSI 373

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           LQ   + +      +I   +    + D   +RQ  +N+LSNA KFT   G + V V    
Sbjct: 374 LQPMVKSREQSFSIRIRNLVHEDFYFDALRLRQCFINILSNATKFTPEKGSITVDVEEEY 433

Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      +  D G GI E  +  +  SF +         +G GLG+ I + I+   
Sbjct: 434 TGDPDYSKLMFTFTDTGIGIKEEFLNNIFDSFTREKDGRVDKTEGSGLGMAITKKIVDIM 493

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G   ++SK+  G   I  LP  
Sbjct: 494 NGTIEVKSKVGMGTTFIVTLPLK 516


>gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 929

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 151/272 (55%), Gaps = 3/272 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L+ +   ++L   ++    L  + ++ A+  N AKS FL+ MSHELRTP+NAI+GF++
Sbjct: 527 TELALKHLNEELEQRVQQRTELLLKAKEEADRANNAKSEFLSRMSHELRTPMNAIMGFAQ 586

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P+  +   + + +I  +GQHLL LINE+LDL+RIE GR ELS   + +  ++
Sbjct: 587 LLETDRETPITLD-QADNVREIRHAGQHLLELINEVLDLARIETGRIELSLEPVEVPLLI 645

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            EC+ +LQ     + IE+   ID    +V AD   +RQ++LNLLSNA+K+    G VH+T
Sbjct: 646 GECMALLQPLTLGRRIELKLDID-GTGTVQADRLRLRQILLNLLSNAIKYNRDRGNVHIT 704

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               +     I++ D+G GIA   +  +   F +   A     +G G+GL +++ ++   
Sbjct: 705 CQPVAAGRIRIAVCDSGRGIAVDAMTRLFKPFERIESAY-DGIEGTGIGLALSKRLVEAM 763

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           GG   + S +  G      LP     +++P D
Sbjct: 764 GGTIGVESVVGAGSTFWVELPAAEAKDYLPSD 795


>gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Anabaena variabilis ATCC 29413]
          Length = 1399

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 5/268 (1%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  + ++    ++  L AE     +     R+ AE  N AK  FL+ +SHELR PLN IL
Sbjct: 975  QLILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFLSILSHELRNPLNTIL 1034

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G++ ++    +     +T  + +  I RS Q   +LI+++LD+SRI +GR  +    I L
Sbjct: 1035 GWASLLSTHQLEA---DTVNQGLEAIERSAQAQAHLISDLLDVSRISSGRLRMDAQPIEL 1091

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            I I+   I +++L A+ KNI I  ++DP+  ++  D   ++QVI NLLSNA+KFT + GR
Sbjct: 1092 IPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLLSNAIKFTPVRGR 1151

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +T+ +T    Q I I D G GI+   +P +   F Q   +   +  G+GLGL I + +
Sbjct: 1152 IDITLEYTDFHAQ-IQISDTGQGISPDFLPFIFERFRQADGSRTRSNTGLGLGLSIVRHL 1210

Query: 449  MANHGGQFLIRSK-LREGVEVIAILPNT 475
            +  HGG    +S     G      LP  
Sbjct: 1211 VELHGGTVAAQSPGEGLGATFTIRLPLQ 1238


>gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 917

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 35/362 (9%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
                +++       +   L         P+++        S+     + A         
Sbjct: 56  VVLLDVMMPGMDGFATCAALRRLPGGEHTPILIMTGLDDFESITKAYDAGATDFIVKPLN 115

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +T+         +      D ++ EL  +++   + R  A E    KS FLA+MSHE
Sbjct: 116 AMLLTHR--------IRYMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHE 167

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N +LG ++ +    +         +    I  SG  LL +IN+ILD S+IE+G+ 
Sbjct: 168 IRTPMNGVLGMTDWLLDTPLTA----EQLDCAQTIRSSGDALLVIINDILDFSKIESGKL 223

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            L      L   +   + +   RAQ K + +  +I   +  S+  D   ++Q++ NLL+N
Sbjct: 224 SLELLDFDLSTFLDRVMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLAN 283

Query: 379 AVKFTAIGG-RVHVTVGWTSGR---------------------GQYISIKDNGPGIAEGE 416
           A+KF+  G   V V +                               S+ DNG GI    
Sbjct: 284 AIKFSEHGSVSVLVELDQRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSA 343

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   +      G GLGL I + ++   GG     S+   G      +P  +
Sbjct: 344 FSKLFQPFVQADGSTTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQQ 403

Query: 477 VL 478
            L
Sbjct: 404 PL 405


>gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +++  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 57  ITQLKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 112

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++YI  I+ + Q LL LIN++LDLS+IEAG  EL     +  +++ E I   + R  
Sbjct: 113 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 171

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++F +   +   +  D   ++Q++ N +SNA+K T   G + V    T   G  IS
Sbjct: 172 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GYIEVYYE-TDTDGIRIS 229

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   ++  +   F +      S  QG GLGL I +SI+    G   + S +  
Sbjct: 230 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 285

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 286 GSTFTVELP 294


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 6/282 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A   + ++   L + + +           IA+    +    + R+ A+  +  KS+FLA+
Sbjct: 246 ADGSYLWLQDQLSQPHPERPHVIIGCLSDIADRMQIEDELVQAREDAQAASRVKSQFLAN 305

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLN +LG ++++    + P      +E +  +  S   L  LI ++LD+S+IE
Sbjct: 306 MSHEIRTPLNGVLGMADLLLDTGLSP----EQRELLDALQSSANALRGLIEDVLDISKIE 361

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ E+   +  L+++V E    + +RAQE+ +E+    +P+L   V  D    RQ++LN
Sbjct: 362 AGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVDAEPALPARVLGDPVRFRQIVLN 421

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT   G V V V   +     +S++D G G+ E     +  SF Q   +    
Sbjct: 422 LLSNAVKFTPA-GEVVVRVRQRADEHIELSVRDTGVGVPEERREAIFESFTQSDGSTTRR 480

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             G GLGL I + +    GG+       + G      LP  R
Sbjct: 481 FGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSLPLPR 522


>gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 644

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +   AE +   +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 224 LGHLARHINNLASALEQASAEQQQTIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 283

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G  +++E   +         +Y      S  HLL +IN+ILD SRIE    +L     
Sbjct: 284 VMGMLQLLETTPLSN----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 339

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ + +  ++   +    V  D   +RQ++LNL+ NA+KFT 
Sbjct: 340 NLGELITSSVQSFQHSAQQRGLGLHLQLPADIDQLQVNGDPTRIRQILLNLVGNALKFTE 399

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W     Q I    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 400 R-GQVQVEARWQVVDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 458

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL IA+++    GG+    S + +G      +P        
Sbjct: 459 GLSIARTLAERMGGKLRGESHVGQGSTFTLEMPLALASQAP 499


>gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
 gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
          Length = 2359

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 16/294 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++   +F       +  +N  ++  Q        E E  AK    E R      EE  
Sbjct: 1824 VGISLVNAFLFREARKISAANAAMIEAQKRALAQAREAEQKAKEAEAEARHNVKLKEEAA 1883

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++  ++    +     Y+  I      LL LIN
Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKQTSL----DRQQDVYVESIRVCADTLLTLIN 1939

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ +++   ++L   + E +  L+   +++ +E  +  D       V  D
Sbjct: 1940 DILDFSKLEAGKMKVTTVPLNLRQTIAEVVRALRYTHRDRGLETIEDFDDIDPDLLVLGD 1999

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V   S     ++  + D G GI+   +  + 
Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEESENTIRVTCTVADTGIGISNDHMARLF 2059

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGV--EVIAIL 472
              F Q   +   +  G GLGL I ++I+    GG+  + S +  G         
Sbjct: 2060 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLHSDVGVGTKVTFTVTF 2113


>gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 595

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           Y L +S +++    A++              +  R++AEE +  KS FLA++SHE+RTPL
Sbjct: 288 YTLTESELELAKEAADQLGTAIAHATLYEELEVARQKAEEASRLKSEFLANVSHEIRTPL 347

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF ++I        + E   +++ + H    HLLN+IN+ILD+++IEAG+ EL+ +
Sbjct: 348 NGMIGFLKLILEGM--ADDPEEQNQFLAEAHNLSIHLLNIINDILDIAKIEAGKMELTYA 405

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382
            + L ++  +    ++ +A+ +N+    ++        V ++ + + QV+LNLL NA+KF
Sbjct: 406 PVKLNELFSDVESFMRPQAEMRNLSFRMQMPATSDEIIVQSNYQRLLQVMLNLLGNAIKF 465

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG V V+                    + + D G G++  +   +   F Q   +  
Sbjct: 466 THEGG-VTVSADLVLKKSKLQDQQFPGLVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRT 524

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
               G GLGL I+Q ++   GG+    S     G  V   +P 
Sbjct: 525 RQYGGTGLGLAISQKLVEAMGGEVHFYSLGEGLGSTVTFTVPL 567


>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
 gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
          Length = 1221

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                    + E    +   ++ R  AE  N AKS FLA+MSHE+RTP+N ++G  +V++
Sbjct: 532 RHFTGIMRDMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLD 591

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++        +E    I  S   LL +I +ILD S+IEAGR E+ ++ ISL  +V   
Sbjct: 592 QTSLSTY----QREMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERA 647

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA---IGGRVHV 391
              L   A  K +E+   +DP+L   V  D   +RQ+++NL++NA+KF++     GRV V
Sbjct: 648 CGTLTHMAASKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAV 707

Query: 392 TVGWTS--GRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                             + DNG G+ +     + T F QG  +      G GLGL I +
Sbjct: 708 RASPAEEVDGDVVTVMFQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICR 767

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            ++    G+  + SK   G      +P   +   + ++    T 
Sbjct: 768 RLVELMKGEISVESKPDVGSVFTVRIPFGIIQREVIQEEELETD 811


>gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 1061

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 9/303 (2%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKS 233
             I     L  ++AG    +      I      +             L    E    ++ 
Sbjct: 480 SFIHPPWNLHTAIAGGFLISGLVAWLIILIYSHTAQIEHQVLERTRALSKSNESLSQSRE 539

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +  AEE N AKS FLA+MSHE+RTPLN ++G   ++          +  +  +  
Sbjct: 540 KLRLAKAEAEEANRAKSDFLANMSHEIRTPLNGVIGSLTLVLQ---SASIAKEQRGLLDI 596

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
             +S   LL +IN+ILDLS+IEAG   L    +SL ++ +E   +L+ +A EK +     
Sbjct: 597 SRQSALTLLEIINDILDLSKIEAGNLILDRKPVSLTELTKETGELLRAKALEKGLVFNIP 656

Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGP 410
             P     V  D   +RQ++LNLL NA+KFT  G   + +   + + +    +++ D G 
Sbjct: 657 STPLPAIEVIGDPLRIRQILLNLLGNALKFTHEGEVNLAIRARFENEKYWLSMAVSDTGI 716

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G++E +   +   F Q   +      G GLGL I + I A   G+  + S+L  G     
Sbjct: 717 GLSEEQKRQLFQRFKQADSSTTRLYGGTGLGLSICKEIAALMDGEIHVESELGSGSTFTF 776

Query: 471 ILP 473
             P
Sbjct: 777 EAP 779


>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 769

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 18/352 (5%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + +    L  + +   +      +  AL   ++        +++ +LA           +
Sbjct: 1   MTVQAGGLRAWSIAATLAALAAALGAALQRSSLQGPWRAATAVSAVLAVVCGICAAAGAY 60

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSH 258
                   L+ + E+ +L  E    +              ++ AE   LAK  FLA+MSH
Sbjct: 61  RAARAQHALAQRLEESELARERLQQELQRHGELEQELLRAKQTAEAATLAKGEFLATMSH 120

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA +
Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            EL  +  +L +++   + +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ 
Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIG 236

Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + +               ++D G GIA  +   +  SF Q   +   
Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              G GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri]
          Length = 744

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +AE+  LI      +      R +AEE N  K  FLA +SHELRTPLN ILG+++++  
Sbjct: 487 AEAERIQLI----RQQVQEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLLR- 541

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G L++      +  I R+ +    LI ++LD+SRI  G+  L+ +A++L   +   I
Sbjct: 542 --AGKLDSAKTDYALETIERNAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAI 599

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             +QL AQ K+I+I    DP++  V  D   ++QV+ NLLSNAVKFT  GGRV + +   
Sbjct: 600 ETVQLAAQAKSIQIETVFDPNVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECV 659

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I + D G GI+   +P V  SF Q    I     G+GLGL I + ++  HGG  
Sbjct: 660 DSQ-AEIKVSDTGKGISPDFLPHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTI 718

Query: 457 LIRSKLRE--GVEVIAILPNTRVLNF 480
              S   E  G      LP   V+  
Sbjct: 719 YAES-PGEDLGATFTVRLPLIAVVKT 743


>gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 842

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 7/259 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + L    ++ +L  + +         +  AE+ N AKS FLASMSHELRTPLNAILG+ +
Sbjct: 349 RQLGVAVQQGELFKQTQKQAEELAMAKMSAEKANQAKSEFLASMSHELRTPLNAILGYVQ 408

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++   T    +   ++  +  I+ SG+HLL LIN++L +S+IEAG+  L+E+   L  ++
Sbjct: 409 LMLRSTALSFD---HRNNLQIINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLL 465

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E   +LQL+A  K +++    D ++   +  DEK +RQV++N++ NA+KFT  GG + V
Sbjct: 466 YELDTLLQLKASSKQLQLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG-ITV 524

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V W  G   + +++D G GI   E+  + + F Q +  I S  +G GLGLPI+   +  
Sbjct: 525 KV-WCKGHQLFFAVQDTGQGIENEELEVLFSPFTQATAGIDSG-EGTGLGLPISAKFINL 582

Query: 452 HGGQFLIRSKLREGVEVIA 470
            GG   + S++ EG     
Sbjct: 583 MGGDITVNSRVGEGTTFTF 601


>gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 898

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+N ++G ++++    +         EY+  I  S  +LL+LI
Sbjct: 523 NQAKSDFLANMSHEIRTPMNGVVGLTQLLRFTELTT----EQVEYLDSIETSADNLLSLI 578

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILDLS+IE+G+ EL  +  SL   +++ II  + R  EK ++I Q+I   L   V  D
Sbjct: 579 NDILDLSKIESGKVELEFTDFSLRKAIQDIIITQKSRIFEKGLQIKQEIAADLPELVNGD 638

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVL 421
           +  ++QV +NLL NA+KFT  G   + V++           I++ D G G+++  +  + 
Sbjct: 639 QLRVKQVFINLLGNAIKFTERGTITIAVSILERESNRALIRITVSDTGIGMSQETLQKIF 698

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   +      G GLGL I + +    GG   + S    G      L
Sbjct: 699 DPFAQADSSTTRRFGGTGLGLSICRKLAELMGGAITVESIPGSGSSFHLDL 749


>gi|331213871|ref|XP_003319617.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298607|gb|EFP75198.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1640

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 133/267 (49%), Gaps = 12/267 (4%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++ S + + + ++  L  A   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G ++
Sbjct: 1064 EMNSLKNQINSMVFSLRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQ 1123

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +     +        +E +  ++    +LL +I+++LDLS+IEAGR  + +   +L   +
Sbjct: 1124 ITLATELTRH----QRENLTIVYAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTSI 1179

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             + +  L ++A   N+++  +I P++   V  D   MRQVI NL+ NA+KFT+  G V +
Sbjct: 1180 FDVLKSLAVKALTSNLQLVFEIAPNVPDFVVGDPFRMRQVITNLIGNAIKFTSS-GHVGL 1238

Query: 392  TVGW------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            +         T        + D G GI   ++  +  +F Q   +      G GLGL I+
Sbjct: 1239 SCKVATLDPVTGEHRLEFCVFDTGIGIKPDKLNLIFDTFCQADGSTTRKYGGTGLGLTIS 1298

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAIL 472
            + ++    G   + S+   G      +
Sbjct: 1299 KRLVNLMEGTLWVESEYNHGSRFYFTI 1325


>gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 633

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+ A     E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++ +      + 
Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY G I  + + LL LIN+ILD+S+IE+G Y+   + +    ++ E   + +LR +
Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +             D+  + QV+ NL+ NA+KFT+  G + +          Y  
Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      +  QG GLGL I + I+   GG+  ++S+  +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 618 GSVFWFTLP 626


>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 876

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 179/459 (38%), Gaps = 46/459 (10%)

Query: 28  PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANL 87
           P   D + ++  + + S+      +P+  LL      W    P    W+           
Sbjct: 26  PGAPDPENQLDLVQITSVIVAVSSVPVMALL------WIMAGPRLGAWAAAASVAVIIGA 79

Query: 88  SLGKKVMNSDIKIGEVYV--WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
            L ++       +  V V    I  + G +  G+   L  ++      P  L  +    +
Sbjct: 80  FLAERGHRRISAVILVIVLNAAIPFIGGVLGPGMADALFPVLLC---VPFVLLPFLRLRV 136

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++  + + +   +L  A       V ++   +  +            +  +   F   T+
Sbjct: 137 VLLATAATMGIILLTAAPIWPTHWVTLSEGERYWLR---------LGIILSAGLFAVTTF 187

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            LF  N  ++  +                       AEE +LAKS FLA+MSHE+RTP+N
Sbjct: 188 ALFFVNRVLVEKR----------------LRRAVLSAEEASLAKSEFLANMSHEIRTPMN 231

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
                   +    +        ++Y      S   LL++IN+ILDLS++EAG+      A
Sbjct: 232 G----VLGMLGLLLDTRLAAEQRDYAETARASAMTLLDIINDILDLSKVEAGQMAFEPVA 287

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
             L   + +    L + A  K +E+  + DP     +  D   +RQV++NL+ NA+KFT 
Sbjct: 288 FDLRSAIEDVFDQLAVLAAPKALELIVRYDPETPSRIVGDAGRIRQVLVNLVGNAIKFTQ 347

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V +               +S++D GPGI+E E   +   F Q  ++      G GL
Sbjct: 348 R-GHVQLRATSEELDDGSVDLKLSVEDTGPGISESEREQIFDKFRQLDVSSTRVHGGTGL 406

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           GL I ++++   GG+  + S+  EG      +P  R   
Sbjct: 407 GLAICRALVHGMGGEIGLESRRGEGSTFWFSIPVERASE 445


>gi|228951472|ref|ZP_04113578.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808179|gb|EEM54692.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 883

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHNNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 731

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 19/303 (6%)

Query: 186 DISLAGMLATALSFFTYITYHLF----------KSNVKILSCQAEKDDLIAELEVAKSLS 235
            I +AG +    +   Y    L           ++N   L    E + +  +L+ AK+++
Sbjct: 253 TILMAGFILLLFAGLFYSISRLSLADQKAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVA 312

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E  + AE  N AK+ FL++MSH++RTP+NAI+G + +I        N     EY   I 
Sbjct: 313 TEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKID 369

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S QHLL +IN++LD+S+IEAG+     S  S++D+V+E   +   +  EK   +    +
Sbjct: 370 ISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQQTLTIIKE 429

Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409
                 V  D+  + Q+  NLLSNAVK+T  GG +   V     +          + DNG
Sbjct: 430 NIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFLVSDNG 489

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++     T+  +F +   ++ +  QG GLG+ I ++++   GG   + S+L +G    
Sbjct: 490 MGMSADFKDTIFDAFTRAERSLTNKIQGTGLGMAITKNLVEAMGGTIDVDSELGQGSCFE 549

Query: 470 AIL 472
            +L
Sbjct: 550 VLL 552


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 14/260 (5%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +      +  A+E + AKS FLASMSHE+RTP+N ++G + ++    + P      ++++
Sbjct: 778  ELALRRAKTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLLMETDLSP----EQRDFV 833

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG+ LL +IN+ILD S+IE+G+ +L      L   + E + +  L+A  K++E+ 
Sbjct: 834  NTIRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFALQASAKHLELA 893

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QY 402
              I P +   +  D   +RQ+++NL++NAVKFT+  G + + V                 
Sbjct: 894  YHIAPDVPEWIIGDITRLRQIVVNLVNNAVKFTSA-GSIAIEVRRRPPTVPANLKRFPLE 952

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
              ++D G GI    +  +  +F Q   +      G GLGL I Q +    GG   + SK+
Sbjct: 953  FVVRDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKV 1012

Query: 463  REGVEVIAILPNTRVLNFIP 482
             EG   I  +         P
Sbjct: 1013 GEGSSFIFTITTEEAAAGAP 1032


>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
          Length = 1437

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I E    +    E +  A+  + AKS FLA+MSHE+RTP+NAILG   +++   +  
Sbjct: 761  NRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNL-- 818

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
               E  ++Y+     S + LL ++N+ILD S+IEAG+  L     SL  ++++  +++  
Sbjct: 819  --EERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITA 876

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
               +K +E+   IDP +   +  D   ++Q+++NL  NAVKFT  G   + V +      
Sbjct: 877  NLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEED 936

Query: 400  GQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  S++D G GI+  ++  +   F Q   +      G GLGL I + ++   GG+  
Sbjct: 937  RLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIA 996

Query: 458  IRSKLREGVEVIAIL 472
              S+  EG      +
Sbjct: 997  AESEEGEGSVFRFSI 1011


>gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 772

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 157/277 (56%), Gaps = 2/277 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     L  +   + + +   +   AEL VA +     ++RAE  N AKS FLA+M
Sbjct: 495 QVRLRESERRLMATIGDLSASRITLEQQKAELSVANANYQAEKERAEAANRAKSEFLANM 554

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFSE+++ +  GPL +E Y EY  DI  SG+HLLN+IN+ILD+S+IEA
Sbjct: 555 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 614

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G   ++   I L  ++ E +    + A++KNI + Q++   L +++AD + M+QV+LNLL
Sbjct: 615 GHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQQVSSGL-TMFADRRAMKQVLLNLL 673

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNAVKFT  GGR+ +           ++I D+G GI    +  +   F Q       ++ 
Sbjct: 674 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPRDALQKIGQPFEQVQSQYAKSKG 732

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++S+   HGG   I S    G  +   +P
Sbjct: 733 GSGLGLAISRSLTRLHGGSIKIHSTENVGTIISVRIP 769


>gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 641

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 96/256 (37%), Positives = 143/256 (55%), Gaps = 1/256 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +     A+    E    A+  N  K+ FLA+MSHELRTPLNAILGFSE+I  E  GP+
Sbjct: 386 HDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIISREMFGPV 445

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E Y+ Y  DI+ +GQHLL +IN+ILD+SRIE G + L    +   ++   C+ ++  R
Sbjct: 446 G-ERYRTYGQDINAAGQHLLAMINDILDISRIEIGAFTLCIEPVDPHELAYSCLRLVGSR 504

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+  N+++ + +  SL  +  D +  +Q+++NLL NAVKFT  GG+V +        G  
Sbjct: 505 AEAGNVDLSEDMPESLPHLMIDSRRTKQILINLLGNAVKFTPPGGKVTLRGETRDSGGIA 564

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G G++E ++   L+ FGQ    +    +G GLGLP+A+S+   HGG   I S  
Sbjct: 565 FHVIDTGIGMSEADMAVALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEITSIP 624

Query: 463 REGVEVIAILPNTRVL 478
            +G  V    P + V 
Sbjct: 625 GKGTTVSVYFPASCVA 640


>gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
 gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
          Length = 883

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|116625119|ref|YP_827275.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228281|gb|ABJ86990.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 618

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 108/453 (23%), Positives = 183/453 (40%), Gaps = 14/453 (3%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           ++      ++ L +       P   +   LV  +  W     IF +     L      L 
Sbjct: 7   ARRGVRSVLLALRLRGPLSADPTAQILHALVLALTIWSAIWTIFTLPLYPNLMARLVRLR 66

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
                    +    +     +     + +   W   T       + E  +     TL I 
Sbjct: 67  FIMVADLVPVTTLILLRLGHFRQATYVYLTGQWAQATYNIAINGSIEITSTAFYITLPIL 126

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            +           A       +++AL                 +L  A      +T    
Sbjct: 127 ATWLLGFREAFWTAGVCLGSALILALRQGPTSVFLPTAPLRPPLLIWANLVQLTLTAAAP 186

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +++ + + Q  K+ L   +E   +     R +A+  N AKS FLA+MSHELRTPL+ IL
Sbjct: 187 VAHI-LQTLQQYKEHLEQVVEQRTAELVIARDQADSANRAKSTFLANMSHELRTPLSVIL 245

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             S+++             +E I  I  SG+HLL LI+ +LD+++IE+G+ EL+ +A  L
Sbjct: 246 ASSDLLNES----DPTPDQREDIDRISHSGKHLLGLIDNVLDVAKIESGKQELAIAASDL 301

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
           +  VR  I M++ RA++K++ +     P +   V  D   +RQ+++NLL NA+KFT   G
Sbjct: 302 LSTVRMVIEMMRGRAEDKHLALIYYQAPDVPRYVRVDAPKLRQILINLLGNAIKFTRE-G 360

Query: 388 RVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            V + +    G           I D G G+ + ++  +   F Q      S + G GLGL
Sbjct: 361 AVELRLSAKPGDEPGYAQFCFDINDTGVGMPQHDLDRIFEPFQQVGNP--SQQAGTGLGL 418

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I +  +   GG  L+ S++  G   +  LP  
Sbjct: 419 TITRRFVELMGGTLLVESEVGRGSCFVVKLPLE 451


>gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/464 (23%), Positives = 186/464 (40%), Gaps = 45/464 (9%)

Query: 50  PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW 109
            ++ L  L  A  G           W  + + +    L++  ++                
Sbjct: 28  MLILLATLAGAATGILLLNRWSGNFWPYLIIGLLLVCLAVSDRLRRRGDL---------- 77

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
             +  I +    TLL ++    +          + L +  +   +S+     A   +   
Sbjct: 78  -RMASIVVVAAITLLPVLSCAAFGFTNNIFIYLSVLGVFAAGIIVSSRAPFRAGQAAILL 136

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAEL 228
            ++ L    ++                L    +    L  +   ++        D   + 
Sbjct: 137 YLLLLLGADLIGQPRPTWFEVIGHLLLLIALLFGAATLSWAAAYVVRGTISWAIDTAQKS 196

Query: 229 EVAKSLSDETRKRAEEEN----------------------------LAKSRFLASMSHEL 260
           E  + L  ET+   E                                +KS F+A+MSHEL
Sbjct: 197 ERREQLLRETQATLERALLERDLLNEQLYRTTLELEEARAAAEAAYRSKSNFMATMSHEL 256

Query: 261 RTPLNAILGFSEVIELETM---GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           RTPLN I+GFS  +            +E   + I +I RSGQHLL LIN+ILDL+++EAG
Sbjct: 257 RTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLGLINDILDLAKVEAG 316

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + EL+++ ++L  ++ E +   Q    ++ I++ ++    L +V+ADE  +RQV+LNL+S
Sbjct: 317 KLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFADEVRVRQVLLNLVS 376

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA KFT   G + V           + ++D G GIA  +   +   F Q   A      G
Sbjct: 377 NACKFTHA-GEIAVGA-RVDTNEIVLWVRDTGIGIAPADQERIFQQFEQIENADTRQHAG 434

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL I + ++  HGG+  + S+L +G      LP TR  +  
Sbjct: 435 TGLGLSICRWLVELHGGRMWVESELGKGSIFFFSLPRTRAGSEP 478


>gi|296501720|ref|YP_003663420.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322772|gb|ADH05700.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 896

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
 gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
          Length = 896

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S L EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V + IP +  E T
Sbjct: 749 ATVDDVIPAEVVEET 763


>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 827

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 6/253 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +   +     +  AE+ +  K+ FLA+MSHE+RTP+N I+G ++++    +  
Sbjct: 424 ERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLSETELH- 482

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  ++Y+  I  S + LL +IN+ILDL+R+E+G+  L      L   +   + +L+ 
Sbjct: 483 ---EDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRP 539

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
            A EK +++       L   V AD+  +RQ+++NL+ NAVKFTA G   V V    T+  
Sbjct: 540 VASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTASGRVDVRVLCASTNPY 599

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I ++D G G+   ++  +   F Q   A   +  G GLGL I++ +     G   + 
Sbjct: 600 RLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTISRLLAKQMDGDITVY 659

Query: 460 SKLREGVEVIAIL 472
           S    G      +
Sbjct: 660 SDPGRGSCFSLHI 672


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 166/394 (42%), Gaps = 29/394 (7%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           +   ++  +          L +    +   + +     ++  + +++L  F       +S
Sbjct: 350 KRTFVINDVPDTYQLIASGLGDVKPKSIFIVPVLFEDEVIAVIELASLHEFTALEQELIS 409

Query: 167 FFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                  L+   ++    +   L     M     +    +     +  ++    +   + 
Sbjct: 410 QVIETFGLTINGVIRRMEIARLLKESQAMTEELQAQSEELQTQSEELQMQSEELRMINEQ 469

Query: 224 LIA----------ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           L            ELE AK   +E   + E  +  KS FLA+MSHELRTPLN+IL  SE+
Sbjct: 470 LEERTKDAEEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEM 529

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +E      L+ +  +EY   IH SG+ LL LIN+ILDLS++E+G+ ++  + +++ ++  
Sbjct: 530 LEENAAKTLSEDE-EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPD 588

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +        A++K +++       +   +  DEK  +Q++ NLLSNA KFT   G V V+
Sbjct: 589 QIERNFSHVAEQKKVQLKINKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFT-ESGSVTVS 647

Query: 393 VGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +   +                  I++ D G GI + +   +  +F Q   A      G G
Sbjct: 648 IQRVADHRLTTAMRTIDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTG 707

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL I        GG   + S++ +G      LP
Sbjct: 708 LGLSICSEFAKLLGGWISLSSEVGKGSTFTLYLP 741


>gi|167462457|ref|ZP_02327546.1| two-component hybrid sensor and regulator [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381877|ref|ZP_08055831.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154265|gb|EFX46587.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 365

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 10/310 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P++   +            SL  +      F   +        V + + Q +       
Sbjct: 50  IPIIFVTAASHEKEHLFTTYSLRAIDYIVKPFTPQMLKSKIAGFVNMYTIQKKLQHQTEM 109

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           L++        ++ AE  N AKS F+A MSHE+RTP+N ++  +       +     E  
Sbjct: 110 LDLRTKELLMAKEAAEAANRAKSNFIAVMSHEIRTPMNGVMAMA----DLLLETELTEEQ 165

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +EY   I +SG  LL +IN+ILD +++E+ + EL E    L  ++ ECI +  +  ++KN
Sbjct: 166 REYTETISKSGNALLTIINDILDFTKMESSKIELEEEIFHLEQLIGECIDLFLVECRKKN 225

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402
           + + ++I+  +   V  D   +RQ+++NLLSNAVKFT   G+V + V   S         
Sbjct: 226 LVLERRINQDIPQYVVGDATRLRQILINLLSNAVKFTEK-GKVSLEVKKRSEEKDGVELE 284

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI + ++  +  SF Q   ++     G GLGL I ++++    G   + S  
Sbjct: 285 FKVSDTGIGIPKNKMDRLFKSFSQIDFSMTRKYGGTGLGLVICKNLIELMSGTITVTSVE 344

Query: 463 REGVEVIAIL 472
           REG   I  +
Sbjct: 345 REGTSFIFTI 354


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 139/326 (42%), Gaps = 14/326 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P+ V   F    V    QA   + +     AG     ++               IL   
Sbjct: 317 FPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLA 376

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +     E   A+      +  AE  N AKS FLA+MSHE+RTPLN +LG  ++++   
Sbjct: 377 GVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTA 436

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N+  KEY+    +S   L  L+++ILD+SRIEAGR ++ E   ++ +       +
Sbjct: 437 ----PNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKEL 492

Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394
             L A+ K + +       L  +   DE  +RQ++ NL+ NAVKFT   G++ +      
Sbjct: 493 FALEARRKGLILEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEK-GKIRIDASLLP 551

Query: 395 -----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 +S     I++ D G GI E  I  +   F Q   +     QG GLGL I   ++
Sbjct: 552 LLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLV 611

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475
              GG+  I S   EG      LP  
Sbjct: 612 KLLGGEIAIDSTPGEGTAFYISLPFK 637


>gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1203

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    E + +AE  + AKS FLA+MSHE+RTPLN ++GF++++    +    N
Sbjct: 667 ITERKKAERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTAL----N 722

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET ++Y+  +++S   LL++IN+ILD S+IEAG+ EL  S   + +   +   +L  +AQ
Sbjct: 723 ETQQQYVAIVNQSANSLLSIINDILDFSKIEAGKIELDISKCDIYEFSSQASDILSFQAQ 782

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398
           +K +E+   + P L   +WAD   ++Q++LNLLSNAVKFT   G + + +          
Sbjct: 783 QKGLEMLLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEK-GEIELEIKPIAYPSVGM 841

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI + +   +  +F Q  I+      G GLGL I+  ++A  G +  +
Sbjct: 842 TTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGLGLSISNKLLALMGSKLQL 901

Query: 459 RSKLREGVEVIAIL 472
            S   +G      L
Sbjct: 902 ESTTGKGSTFFFDL 915


>gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas
           fluorescens]
          Length = 917

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 19/380 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + L               ++ LLIA+ +   +   L  +  ++     + L+   
Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICNAALALRISRTINLPISQIKLAVAQ 207

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231
           +   ++                + I              Q   D    ++          
Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+
Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYL 323

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S  +LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+ 
Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407
                 +  ++  D   ++Q++ NL+SNA+KFT  G  V    +           IS++D
Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E
Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503

Query: 468 VIAI--LPNTR-VLNFIPED 484
                 LP TR  +  +P  
Sbjct: 504 FWISLNLPKTRDDVEDLPAA 523


>gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 1229

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 14/285 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                    + E    +   ++ R+ AE  N AKS FLA+MSHE+RTP+N ++G  +V+ 
Sbjct: 532 RHFTGIMRDMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLS 591

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++        KE    I  S   LL +I +ILD S+IEAGR E+ +  ISL  +V   
Sbjct: 592 QTSLSSY----QKEMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERA 647

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA---IGGRVHV 391
              L   A  K +E+   +DP+L   V  D   +RQ+++NL++NA+KF++     G V V
Sbjct: 648 CGTLTHMAASKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIV 707

Query: 392 TVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                             + DNG G+ +     + T F QG  +      G GLGL I +
Sbjct: 708 KAVPADRANGDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICR 767

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPEDNHESTQ 490
            ++    G   + S+  +G    A +P   +    + +D  +   
Sbjct: 768 RLVELMKGDITVESQPGKGSTFKARIPFRMIQEGAVQQDEPDEVD 812


>gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 592

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+  I G++E +    +   + E    ++  IH   + L +
Sbjct: 360 RLEKIRRDFVANVSHELRTPVTVIKGYAETLLSGAL-ASDPERAVRFVEIIHSHSERLTS 418

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L LS +E+G   L  S +++   VR  +++L+ +A +K I I      +   +  
Sbjct: 419 LIGDLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILG 478

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV++NLL NA+K+T   G + V       +   IS+ D G GI   ++P +   
Sbjct: 479 DRGRLEQVLINLLDNAIKYTPEKGTITVKAA-DEEKMLKISVTDTGMGIPPKDLPRIFER 537

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   A    + G GLGL I + I+  HGG   + S + +G      L
Sbjct: 538 FYRVDEARSREQGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTL 586


>gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 757

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  ++  ++    A     AKS+FLA+MSHELRTPL +I+GFS ++       +
Sbjct: 366 RDITERKAVEAALEDAMVDANAAAEAKSQFLATMSHELRTPLTSIIGFSALLRE----VV 421

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  + Y   I  + Q LL LIN+ILD S++EAG+ EL  +  S  ++++E   +L+++
Sbjct: 422 ESEEPRRYSQRIWTASQGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQ 481

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  K + +    D  +  +  DE  MRQ+++NL  NAVKFT  GG V + + W  G    
Sbjct: 482 AHAKGLFLTVDTDDDMPLMLLDEVRMRQILINLAGNAVKFTGDGG-VTIALHWR-GDRLQ 539

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +++ D GPGI+      +   F Q          G GLGL I + ++   GG+  + S  
Sbjct: 540 VTVTDTGPGISPEGHKRLFKRFSQVDHTTN----GTGLGLMICKQLVELMGGRIGVESSP 595

Query: 463 REGVEVIAILPNT 475
             G      +P  
Sbjct: 596 GNGSMFWFDIPVQ 608


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum]
          Length = 1516

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 18/282 (6%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +AE     +  E +++L+      A+E +  KS FLA+MSHE+RTP+  ++G SE++ 
Sbjct: 832  RRRAEHKLEESMHERSRALA--AETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLC 889

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +    ++  +++  +I RS   LL +IN+ILD  ++E G+ +L ++A +L  ++ + 
Sbjct: 890  DTPL----SKEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDT 945

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
              ML    Q+K +E   +   S +  +  D   +RQV+ NLL+NA+KF A  G + + V 
Sbjct: 946  QKMLTFATQKKGLEFRNECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAA-GAITLRVI 1004

Query: 395  WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             T         +  ++D G GI++  +  +   F Q   +      G GLGL I ++++ 
Sbjct: 1005 ETYEDQKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVD 1064

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNH 486
              GG   + S   +G      +P  +V       +  P+D  
Sbjct: 1065 LMGGTIGLESVENKGSNAWFSIPFEKVGVHETSGDSSPDDET 1106


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 38/400 (9%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +       T  I + ++ +   M    + L 
Sbjct: 1601 LNIIVLPVLFEGEVKAIIELASFHPFSAIHQIFLDQLTESIGVVLNMIIANMRTEQLLLQ 1660

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
               +   L +Q+              L             L    +++     + ++   
Sbjct: 1661 SQGLTQELQSQSRE------------LTQQQEELKRTNTELEAQALELEEKAKQLEEQNT 1708

Query: 227  ELEVAKSLSDETR----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +E   +  +  R    ++AE+ +     KS FLA+MSHELRTPLN++L  ++++     
Sbjct: 1709 RVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKD 1768

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ +   EY   I+ SG  LL+LINEILDLS++EAG+ ++    I L ++ +      
Sbjct: 1769 GNLSGKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSF 1827

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A++KN+    ++  +    +  D + ++QV+ NLLSNA KFT  GG V + V     
Sbjct: 1828 RPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADK 1886

Query: 399  RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
              ++               + D G GIA+ +   +  +F Q   +      G GLGL I+
Sbjct: 1887 GVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSIS 1946

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            + I    GG+  + S L +G      LP   V    PED 
Sbjct: 1947 REIAKLLGGEIHVESTLGKGSTFTLFLPPEYV---APEDE 1983


>gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 995

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 144/253 (56%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +  + +  + ++ AE+ N+AKS FL+ MSHELRTPLN ILGF++++E   M   
Sbjct: 243 EDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDES 299

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE   +++ +I   G HLL+LIN+ILD+SRIE G  ++S   + L+ +++ECI ++Q  
Sbjct: 300 LNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPL 359

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A++KNI I+ ++D      V AD   ++Q++LNLL NA+K+    G+V V         Q
Sbjct: 360 AKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFC-RLQENKQ 418

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           YI I D G G +  E   V   F +      + E+G G+GL + + ++   GG   + S 
Sbjct: 419 YIHIVDTGVGFSVEEYTKVFVPFYRIEN---TKEEGTGIGLSLVKQLVHLMGGDINVTSN 475

Query: 462 LREGVEVIAILPN 474
              G E    LP 
Sbjct: 476 KGTGSEFCFSLPL 488


>gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae FF5]
          Length = 654

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
          Length = 928

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 21/298 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 224 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 283

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLL 339

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL   + + +++L   A EK +E+   I   +    
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + ++  D G GIAE +  
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 517


>gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. ORS278]
          Length = 774

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/269 (39%), Positives = 151/269 (56%), Gaps = 2/269 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + + +   Q+  +    EL        + + RAEE N  KS+FLA+MSHELRTPLN
Sbjct: 495 RLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLN 554

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++     G L +E Y+EY  DI  SGQ+LL +IN+ILD+S+IEAGR +L    
Sbjct: 555 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEP 614

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L   + E + ++  RAQ+K++ +   I+ ++  V AD +  +Q+++NLLSNAVKFT  
Sbjct: 615 LDLAKTLAESLRVVSGRAQDKSLVLDADIEGNIP-VIADRRATKQIMVNLLSNAVKFTPE 673

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV +           + I D G GI    +  +   F Q    +     G GLGL IA
Sbjct: 674 GGRVTMR-SRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIA 732

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +S+   HGG   +RS+L  G  V   LP 
Sbjct: 733 RSLAQLHGGSMRLRSRLEHGTVVRVTLPR 761


>gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
 gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
          Length = 831

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 142/291 (48%), Gaps = 15/291 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              +   N+ +      ++ LI          +  +E R  AE  + AK+ FLA+MSHE+
Sbjct: 409 GMRMIGVNLDVTRDVHLREKLIEANHALMQRNNELEEARIAAERADRAKTEFLANMSHEI 468

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N I+G ++++    +G    E  ++Y+  I  S   LL +IN+ILDLSR+EAG+  
Sbjct: 469 RTPMNGIIGMADLMSESNLG----EGERQYLDTIRDSSHALLKIINDILDLSRMEAGKLA 524

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           +S     L   +   + +L+ RA+EK + +    +  L   +  D+  +RQV++NL+ NA
Sbjct: 525 ISPVDFDLQRCISGAVNLLRPRAREKGLWLSLSFEEGLPGLMRGDDGRIRQVLVNLVGNA 584

Query: 380 VKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           VKFT  GG V + V   +G      I ++D G GI   +   +   F Q   AI  +  G
Sbjct: 585 VKFTHSGG-VDIRVSKVAGDPYHLQIEVEDTGIGIKPEQAAHIFDRFSQADAAITRSFGG 643

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLN-FIPED 484
            GLGL I+  + +  GG   +    ++G      L   P   V+    PE 
Sbjct: 644 TGLGLTISSILASRMGGGITLCEDKQDGACFTLQLRLEPAEGVVQLEEPEQ 694


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 28/355 (7%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201
           ++  + I+ ++ F       +        L+  +++    +   L     M         
Sbjct: 388 VIAVVEIATMAKFSKLQQELVRQVTETFGLTVNSVLGRMEIVRLLNESRAMTEELQVQSE 447

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251
            +     +  ++        + L    + A+      ++ +K  EE           KS 
Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAESKSRELEKAKKELEESAEQLILNSNYKSE 507

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLN+IL  SE++   +   L +E   E+   IH SG+ LL LIN+ILDL
Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENSQHNLTDEEA-EFAKVIHSSGEDLLALINDILDL 566

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370
           S++EAG+ ++  + +++ ++  +        A +KN+         +  V + DEK  +Q
Sbjct: 567 SKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNLAFHISKADHVVDVFYTDEKRFQQ 626

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIP 418
           ++ NLLSNA KFT   G V + +               S     I++ D G GI + +  
Sbjct: 627 ILKNLLSNAFKFTEQ-GSVTLDINQLTPQQLTNNMQDISKDWLEITVSDTGIGIPKDKHQ 685

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  SF Q   A      G GLGL I +      GG   ++S   +G      +P
Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSTEGQGSSFTLTIP 740


>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 536

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  ++ VAK    E +K     + AK+ FLASMSHE+RTPLNAILG ++ +    +    
Sbjct: 140 LREQMVVAKEREVEAKK----ASQAKTDFLASMSHEIRTPLNAILGMADTLTETNLTN-- 193

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                EY+  +  SG+ L N+IN+ILDLSRIE+G+ E+     S+ D+++E I +  ++A
Sbjct: 194 --EQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKA 251

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
           + K I+I   +   ++  +  D   ++Q+++NL+ NA+KFT   G+++V    +  +   
Sbjct: 252 KSKGIQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFT-EIGKIYVDASLSQDQKSL 310

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GI   ++ ++  SF Q   +      G GLGL I + ++    G+  ++S+
Sbjct: 311 CLIVEDTGIGIPNEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQ 370

Query: 462 LREGVEVIAILP 473
           L +G + +  +P
Sbjct: 371 LGKGSKFVLNIP 382


>gi|197119551|ref|YP_002139978.1| HAMP/Hpt domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088911|gb|ACH40182.1| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 817

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 182/500 (36%), Gaps = 31/500 (6%)

Query: 9   EKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILP--LFVLLVANIGTWF 66
              +   +S   + +G    + + F+         +  R  P +   L VL    +   +
Sbjct: 42  RSGMQTELSALAEIVGSNSSAAVAFNDRKSAADTLAALRAKPYILTALVVLKDHTLFASY 101

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR-IWLLVGQI-AIGLCWTLL 124
                                   +K+     +      +      +  I   G     +
Sbjct: 102 VAPGATLQLLGFVDGSGEGARVDDRKLRVELARASFPLAFGGHIFGISPIILDGQQLGTV 161

Query: 125 TL---VEPGTWTPEYLTIYKSATLLIALSISALSNFML------PYAVFLSFFPVVVALS 175
            +           +   +  +  LL ALS+       L      P +        V    
Sbjct: 162 VIQSDATELKHRLKPFFLMLAGVLLGALSLGYFLAAKLQRIISEPISHLAQVMKAVSTDK 221

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           +  + +    +  L  ++         I     K     +  +        EL  A    
Sbjct: 222 SYNLRAQKQGNDELGTLMDGFNEMLVQIQERDQKLEAHRIELEEVVQRRTHELSAANREL 281

Query: 236 DE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +       ++  AE  +LAKS+FLA+MSHE+RTP+N +LG   V+    +        +
Sbjct: 282 SQTVAELRFSKDAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAG----EQR 337

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            +   +  SG+ LL +IN+ILD S+IEAGR  L  + + L  ++ E + M    A+ K +
Sbjct: 338 CFAEAVRNSGESLLCIINDILDFSKIEAGRMHLDPAPMDLHGMMAEVLEMFGAGARSKGV 397

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403
            +  +  P +   V AD   +RQ+++NL+ NAVKFT+  G V +           R    
Sbjct: 398 GMECRTAPDVPRYVEADLARLRQIVVNLVGNAVKFTSR-GEVQLHAFQLEERGEERVLRF 456

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI    +  +  SF Q   +   +  G GLGL IA+ +    GG+  + S+  
Sbjct: 457 EVVDTGIGIRPEALAHIFDSFTQADYSTTRSFGGTGLGLAIARQLAELMGGELGVVSEFG 516

Query: 464 EGVEVIAILPNTRVLNFIPE 483
            G      L   + L   PE
Sbjct: 517 AGSTFWFTL-RLKALAEAPE 535


>gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+A++SHEL+TPL +I GF E ++   +   + E   +++  I    + L+ LIN++
Sbjct: 346 RSDFVANVSHELKTPLTSIKGFVETLKDGAI--EDKEIAGKFLNIIEVEVERLVRLINDL 403

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS IE  + +++E  +++ +++ ECI +L+ +A+ KNI++  ++D  L  +   +  +
Sbjct: 404 LYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKL-KMKIHKDWL 462

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+ +NL+ NA+ +    G V + V     +   I +KD G GI + EI  +   F +  
Sbjct: 463 KQIFINLIDNAIVYNRENGEVIIEVERLDEKIA-IRVKDTGIGIPQNEIERIFERFYRVD 521

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                   G GLGL I + I+  + G+  ++S++ +G E   ++
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGSEFTIVI 565


>gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 721

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 14/332 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYITYHLFKSNVKILS 216
           +  A       + +      ++  HV  I+                +     +   ++  
Sbjct: 165 VTQAANTFLISLFIVYILSRLVMRHVAAIARTVESYDFREPPRPFSLQRCKRREPDELDR 224

Query: 217 CQAEKDDLIAE------LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             A  + + A        E   +   E R  AE  N AK  FLA+MSHELRTPLN ILG+
Sbjct: 225 VAAAFNAMGARLYCAYRDEQDTAAEREARNLAEAANRAKGEFLANMSHELRTPLNGILGY 284

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++E        +E  +E    I  SG+HLL LI + LD +RIEAG+  +    + L  
Sbjct: 285 AQILER---DAALSERQRERASSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAG 341

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            V     ++ ++A++K ++   +I       V ADE+ +RQV+LNLL+NAVKFT   G V
Sbjct: 342 FVDVIRDIIDVKAEQKRLDFICEITGDAPVGVRADERRLRQVMLNLLANAVKFT-DSGCV 400

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +  +        ++D G GI   ++ T+   F Q   A + A  G GLGL I++  +
Sbjct: 401 TLHISRSESNRVRFEVRDTGIGIGHDQLNTIFEPFEQLGAAERRA-GGAGLGLAISREFV 459

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              GG+  + S++ +G      LP   V   +
Sbjct: 460 RAMGGEIEVESRIGQGSTFRFELPAASVTPVL 491


>gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 856

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 27/273 (9%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A       ++ AE+ N AKS FLA+MSHELRTPLNAILG+SE+++ +      +
Sbjct: 577 ITEHKQA-EELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDAEDLGQD 635

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   + + +IH +GQHLL LI++ILD S+IEAGR         +  ++ E    +   A 
Sbjct: 636 DWVAD-LKNIHVAGQHLLTLISDILDFSKIEAGRMNFHLEKCQINTLLWEVETTIAPLAD 694

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396
           + + +   ++ P L  ++ D   +RQ +LNLLSNA KFT   G+V + V           
Sbjct: 695 KNHNQFTLEVAPGLDLMYTDLTKVRQSLLNLLSNACKFTEQ-GQVTLRVWKQLIPATDLP 753

Query: 397 ----------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                                +  ++D+G G+ E +I TV + F Q   +      G GL
Sbjct: 754 DLPVYHSLESPEEELSEIPFIFFQVQDHGIGMNERQIATVFSPFTQADESTTRKYGGTGL 813

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I   +    GG   + S+L +G      LP
Sbjct: 814 GLSITHKLCQMMGGDLWVESELNKGSTFTMRLP 846


>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 933

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 22/307 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL   + + +++L   A EK +E+   I   +    
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + +  +D G GIAE +  
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP   
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNP 522

Query: 477 -VLNFIP 482
             +   P
Sbjct: 523 HAMPTEP 529


>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 754

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 132/285 (46%), Gaps = 14/285 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L ++++     Q E           +      ++ AE   LAK  FLA+MSHE+RTPLN
Sbjct: 57  RLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLN 112

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL  + 
Sbjct: 113 GIIPMLELISSGQLSV----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITT 168

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
            +L +++   I +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+KFT 
Sbjct: 169 FNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTE 228

Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V + +               ++D G GIA  +   +  SF Q   +      G GL
Sbjct: 229 R-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGL 287

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           GL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 288 GLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 332


>gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573]
 gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573]
          Length = 733

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++  +
Sbjct: 323 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 382

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        ++++  ++ SG+H++ L+NEILD S+IE G++EL  S   L  I+     
Sbjct: 383 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 438

Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V V +   
Sbjct: 439 IYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 497

Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +   +Y   I ++D+G GI +  +  +   F Q          G GLGL I + I     
Sbjct: 498 NIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 557

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           G   ++S++ +G             +   ++ ++  + K Y
Sbjct: 558 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596


>gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 569

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F+A++SHEL+TPL +I GFSE ++       + +  ++++  I+     L  LIN+
Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + EL +  I L +++ +   +++  A++KNI I    +  +  +  ++  
Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 460

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             Q+I+NL+ NA+K+T   G V +      G      ++D G GI+E  +  +   F + 
Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLYRIFERFYRV 519

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   AE G GLGL I + I+ +  G+  ++S+ + G + I  +P +
Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIPLS 567


>gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2624

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 19/274 (6%)

Query: 230  VAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             AK    E ++    AEE   AKS FLA++SHELRTPLN ++G SE++    +    ++ 
Sbjct: 1919 KAKDAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----DKD 1974

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLR 342
              E    I  S   LL +IN+ILD S++EA + +L   A +  D+VRE +  +    + +
Sbjct: 1975 QLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREK 2034

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              +KN++I Q I+     ++ D   + QV+ NL+ N++KFT   G + +         ++
Sbjct: 2035 TSKKNVKIVQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARLDKETKEH 2093

Query: 403  ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFL 457
                  ++D G GI   ++  +   F Q   +      G GLGL I +S++     G+  
Sbjct: 2094 AMLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIR 2153

Query: 458  IRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489
            + S+   G            +      +   ++T
Sbjct: 2154 LESEENVGTTAWFTVTFEKAKSDVAAGDAQSKTT 2187


>gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
 gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
          Length = 628

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 19/309 (6%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P    +    +   ++  I   G+L      +  +           L     ++     
Sbjct: 338 LPQGSIIYNMPLEVRYLNYIIAGGILLVIAIVYIILH----------LIYMYYRES--ER 385

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               +    E ++RAEE N  KS FLA+MSHE+RTPLNAI+GF+ +++ E    L +E  
Sbjct: 386 KRQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--ELTDEEK 443

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             +   I+++   LL LIN+IL+LSRIE+GR   +    SL +++ E      L     N
Sbjct: 444 DLFRNTINKNSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPS-N 502

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I   ++   +   +  D     QVI N ++NAVKFT  G  +   V     +  ++ ++D
Sbjct: 503 IRFLKEFQETELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGAVYKKEEKEVHVFVED 562

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++E     V   F +         QG GLGL I Q+I     G+  + S+  +G  
Sbjct: 563 TGKGMSEEAQKKVFERFFKVDE----FAQGTGLGLSICQTIAERLEGRITLSSQEGKGSR 618

Query: 468 VIAILPNTR 476
              I+P   
Sbjct: 619 FTLIIPCRP 627


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 131/262 (50%), Gaps = 10/262 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFS 271
           L      D+L +     +   +E R+    A+  N AKS FLA MSHE+RTP+  +LG +
Sbjct: 149 LEVAERTDELSSVNRQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMT 208

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++    +    ++    ++  + RSG+ LL +IN ILD S+IEAGR EL      L  +
Sbjct: 209 ELLLNTDL----SKEQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQL 264

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390
             + + M    A +K I +  +I+P L  ++  D   +RQV++NLL NAVKFT   G V 
Sbjct: 265 AADAVAMFAEDAAKKGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPE-GAVT 323

Query: 391 VTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           ++V          ++++D G GI+      +   F QG  ++     G GLGL IA+ + 
Sbjct: 324 LSVSLAREPALVRVTVEDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLT 383

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG   + S+  EG      
Sbjct: 384 ELMGGVMELSSEPGEGASFSFT 405


>gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 5/267 (1%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
              +  LS  A+      ELE A +     + +AE+ + AKS FLA MSHELRTPLN+IL
Sbjct: 272 SITLDRLSLIAKLQQTNIELEQANTSLVYAQAQAEKAHKAKSDFLAMMSHELRTPLNSIL 331

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS+++  +T  PL+ +   + +  I +SG+HLL +IN+IL L ++E G+  +    + L
Sbjct: 332 GFSQLLHQDTGTPLSAQQLAK-VDKILKSGRHLLTMINDILKLVKLENGKPFIEFQEVDL 390

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
             IV+  +  +   AQ K +++  +     S   +++D   ++QV+LNLLSN+VK+    
Sbjct: 391 DAIVQAALREITPYAQLKKLKMNCEDLKLKSDQIIYSDPVRLQQVLLNLLSNSVKYNREH 450

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + ++    S     ++++D G GI+  E   +   F +         +G G+GL + +
Sbjct: 451 GNITISY-QVSEHTVTVNVEDTGVGISSVEQSKIFDPFYRTEE-FSMEAEGTGIGLSLVK 508

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+    G+  + S+L EG      LP
Sbjct: 509 QIVTEMQGKIGVESQLGEGSTFWIELP 535


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 133/252 (52%), Gaps = 7/252 (2%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +  + +    E++++AE  ++ KS FLA+MSHE+RTP+NAI+GF+EV+  +     N  
Sbjct: 571 TDRRMIEEALIESKEKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQN-- 628

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+++  I  S + LL L+N++L+ ++++ G  EL     SLI +V +      + A+ 
Sbjct: 629 --KKHLETIRNSAKSLLRLLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKR 686

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K +E        L   +  D   +RQ++ NL+ NA+KFT   G++ + +    G+     
Sbjct: 687 KGLEFLTHYSNELEDYYRGDSLRIRQILTNLIGNAIKFTKQ-GKIELFITPHKGQ-VLFH 744

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+D G GIAE  +  +   F Q  +++     G GLG  I++ ++   GG+  + SKL  
Sbjct: 745 IQDTGIGIAEDRMEKIFEPFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLESKLGV 804

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 805 GTNFYFSLPLPK 816


>gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 933

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 20/261 (7%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  E     K  F++ +SHELRTPL +I G  +++  + + P  +E  +  +     + 
Sbjct: 423 RREVE---RLKDEFVSVVSHELRTPLTSISGALDLLASKVV-PAGSEDAQRMLNIAANNT 478

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ LIN+ILD+ RIE+G+ +++  A +  D++ + + +++  A++  I++   + P  
Sbjct: 479 DRLVRLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLA--MSPLS 536

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGP 410
           + +WAD   + QV  NL+SNA+KF+  G  V VT                    +KD G 
Sbjct: 537 AHLWADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGR 596

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++ ++   FGQ   +    + G GLGL I +SI+ +HGG+    S L EG     
Sbjct: 597 GIPADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFF 656

Query: 471 ILPNTRVLNFIPEDNHESTQY 491
            LP        PE+ ++  ++
Sbjct: 657 TLPI------FPEEQNQEEEF 671


>gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp.
           ND132]
 gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 672

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 15/276 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +    + + D L   LE  +      ++ AE  N AKS FLASMSHE+RTP+NAILG +
Sbjct: 256 ERTEELKRKNDSLNGALEQVRR----AKQAAEVANAAKSSFLASMSHEIRTPMNAILGMA 311

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++         +E    Y+     +G++LL ++++ILDLS+IEAG   L ++   L +I
Sbjct: 312 DIL----WETELSEDQARYVDVFRTAGENLLEILDDILDLSKIEAGHLTLEKTWFPLTEI 367

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG--- 387
           +     ++Q +A +K + +     P +   +  D   +RQV+ NLL NA+KFT  G    
Sbjct: 368 LDRTCGVIQTKASKKGLGLSCVAAPEVPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAM 427

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V +      G   + SI D G G++  ++  +  +F Q   +      G GLGL I++ 
Sbjct: 428 NVDIASRDDEGVVLHFSITDTGVGVSGDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKE 487

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           ++   GG+    S   +G          R     PE
Sbjct: 488 LVQMMGGRIWAESTPGKGSTFHFT---ARFDTARPE 520


>gi|300864140|ref|ZP_07109035.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337868|emb|CBN54181.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1037

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/493 (22%), Positives = 196/493 (39%), Gaps = 56/493 (11%)

Query: 30  KMDFDREIITLH-VESLFRVSPILPLFVLLVANIGTWFTQNPIFP-----MWSLITLAVY 83
           ++  D+ +  +  V S   V       +  ++     +   P         W +    ++
Sbjct: 319 QLALDKYLAPVFGVVSPRGVFGPALAMIFGLSMFFLIWGDVPHIVVVGNVGWFVSFTVLH 378

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWL---LVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            +           +  +    +  +      +     GL W        G  +P  + + 
Sbjct: 379 LSMWL-----QRDNPGVLAPRLSLVIFFVEAIVLFVGGLAWE-WQYFLIGLLSPMAILVI 432

Query: 141 KSATLLIALSISA---------LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD----- 186
             A   I L I            S       + +     ++AL    ++           
Sbjct: 433 DFAIRRIRLPILRPAWWIERYQYSAAGTMQDLLMFQVTTIIALVCGGVLMGWAFRSVLNQ 492

Query: 187 ----------ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS--L 234
                     + L  ++A         T       ++    QAE  +   E+ VA+    
Sbjct: 493 GTSEQQNNLILVLVMIVAFVGVAIACWTTLPQVFAIEEARQQAELLNQDLEIRVAERTVE 552

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E ++ A+  N AKS FLA+MSHELRTPLN ILG++++++         E  ++ IG I
Sbjct: 553 LKEAKEIADSANRAKSEFLANMSHELRTPLNGILGYAQILQR---SKSLVELDQKGIGII 609

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           ++ G HLL LIN+ILD S+IEA + E+  +       +   I + +++A++K I+   + 
Sbjct: 610 NQCGTHLLTLINDILDFSKIEARKMEIYAADFYFPSFLEAVIEICRIKAEQKGIDFIDQT 669

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG--------RVHVTVGWTSGRGQYISI 405
           +  +   +  DEK +RQV++NLL NA+KFT  G         +V       +       +
Sbjct: 670 EGVIPLGIHTDEKRLRQVLINLLGNAIKFTEQGSVKFLINSRKVESEDREVNLYRIRFQV 729

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI++  I  +   F Q    +K   +G GLGL I+++I+   G    + S+L +G
Sbjct: 730 EDTGVGISKDHIKNIFLPFEQSGN-MKKQSEGTGLGLAISKNIVDMMGSTLEVESELGKG 788

Query: 466 VEVIAI--LPNTR 476
                   LP  +
Sbjct: 789 SVFCFEIDLPEAK 801


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    I++ + + + I      A+EKNI +   I  +      
Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEEEFMF 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T+ GG V ++V         I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I ++I+  H G   + S++ +G      +P  R
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTKR 589


>gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
 gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
          Length = 794

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 134/263 (50%), Gaps = 13/263 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++    + +   LI + +  +    + + +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 389 LRTSKLKNKLLILIDKQKEDEIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 448

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++ +      + E   EYI  I  + + LL LIN+ILD+++IEAG  E  +S I +  +
Sbjct: 449 NLLTM----AEDEEERNEYINIISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINAL 504

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + +     +L+A E  ++I          + +D+  + QVI N ++NA+KFT  G    +
Sbjct: 505 LSDIEQSSRLKAPE-GVQISFVEKMPYCIIMSDKNRLAQVITNFINNAIKFTKEGS---I 560

Query: 392 TVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             G         + ++D G GI   +   V   F +      S  QG GLGL I Q I+ 
Sbjct: 561 RFGYRHKDDKLLLYVRDTGCGIEPEKKDLVFNRFVKL----NSFAQGTGLGLAICQMIVK 616

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
             GG+  + S+L +G      LP
Sbjct: 617 KMGGEIGVESQLGKGSTFWFTLP 639


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
          Length = 1329

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             RK+ E     K  F++ +SHELRTPL +I G   ++    +    +E  K  +     S
Sbjct: 808  ERKQVE---KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLST-TSEQGKRLLQIATDS 863

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             + L+ LIN+ILD+ RIE+G+ ++      L D++   I ++Q  A +  + +  +   S
Sbjct: 864  TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNS 923

Query: 358  LSSV-----WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             S+      WAD   + Q + NL SNA+KF+  G  V++       +   ++++D G GI
Sbjct: 924  SSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQ-VLVTVQDTGRGI 982

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E ++ ++   F Q   +      G GLGL I +SI+  HGG+  ++S L +G      L
Sbjct: 983  PEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTL 1042

Query: 473  P 473
            P
Sbjct: 1043 P 1043


>gi|289164577|ref|YP_003454715.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
 gi|288857750|emb|CBJ11594.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
          Length = 910

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 14/296 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   N  I    A+    +  LE         +K+ EE++  KS F+A+MSHE+RTP+
Sbjct: 253 ETIRDLNHHIEVATADLQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPM 312

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF+ V+    + PL      +Y+  I  S Q LL +IN+ILD S+I+AG+  L   
Sbjct: 313 NGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCI 368

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
            +++   + E + +    A +K I++    + ++   V  D   ++Q I NL++NAVKFT
Sbjct: 369 PLNIRHCIDEVLALAAPNAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFT 428

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V +               I+I D G GI+  +   + T+F Q   +I     G G
Sbjct: 429 -DHGYVLIRTNVEQETEKDYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSG 487

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           LGL I + +     G+    S+L +G    A +   +++ +      E  Q   +A
Sbjct: 488 LGLVICKKLCEEMKGRITFASELNKGSVFTAYIKVEKLVAY----EVERNQVHPFA 539


>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 708

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 12/342 (3%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFFT 201
           +  A    A      P A+  +     +A S  A          D+++A        +F 
Sbjct: 101 ITFANEGFARLLGTSPEALLGTTREATIAESLAAETRPDGSRTADLAIAPAAGGPPRWFA 160

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   +   + +    +A ++  I E   A    DE R RAE  ++AKSRFLA++SHE R
Sbjct: 161 VVESAVVGRDGRPEVLRAGRE--ITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFR 218

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG ++++    + P      + YI  I  SG+ LL LI+ ILD S+IEAGR +L
Sbjct: 219 TPLNGILGMADLVLETPLSP----EQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDL 274

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
           +        +V   + +L  RAQ+K +EI   +   L   V  D   +RQ++LNL  NAV
Sbjct: 275 ACEPFDPAALVESVVELLAPRAQDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAV 334

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG V +T          +++ D GPGI E  +P +   F QG  +     +G GL
Sbjct: 335 KFTEAGG-VGITAERVGED-LVLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGL 392

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           GL I + ++   GG+    S+   G     +LP   +    P
Sbjct: 393 GLAITRRLVDRMGGRIETTSRPGAGSCFRVVLPLRALDGERP 434


>gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1559

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 15/279 (5%)

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E    I +L   +    ET + A+  + AKS FLA+MSHELRTPLNA++GFSE+++    
Sbjct: 1144 ENAVEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQS--- 1200

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            GP+ ++  +  +  I+ +G  LL LIN+ILDLS++EAG+ ++    +   + ++    + 
Sbjct: 1201 GPMPDQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIF 1260

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT 396
               A+ + + +   + P++  +  D K +RQV++NLL NA KFT  GG            
Sbjct: 1261 THTARTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGGVLLEAAFETVND 1320

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  + + D G G++   +  +   F Q         +G GLGL I+Q ++A  GG  
Sbjct: 1321 HFGTLILKVSDTGIGMSPETVRQLFDPFRQ---HHTRDYEGTGLGLAISQRLVARMGGSI 1377

Query: 457  LIRSKLREGVEVIAILP------NTRVLNFIPEDNHEST 489
             + S+   G     +LP      +  V   +PE   +S 
Sbjct: 1378 EVTSEPEHGSTFRIVLPGVEYRRSQAVPASLPESEKDSP 1416


>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
           WPP163]
 gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 928

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 21/298 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 224 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 283

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLL 339

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL   + + +++L   A EK +E+   I   +    
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + ++  D G GIAE +  
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 517


>gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  ++   +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 384 ERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E   + I  +  SG HLL+L+N+ILD S+IE  + EL+ ++    D++         
Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396
             ++K ++     + +  ++   D+  +RQ+I NL+SNAVKFT   G + +    T+   
Sbjct: 500 ICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTAK 558

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I ++D G GI +  +  +   F Q   +      G GLGL I + +     G  
Sbjct: 559 GEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618

Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490
            + S   +G     +LP            + +P D ++ T+
Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 8/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    +   RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 571 VTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 627

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +I  I +SG  LL +IN+ILD S+I+AG+ +L ++A  L++ V +   +L   A 
Sbjct: 628 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAA 686

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V     +G    
Sbjct: 687 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQAAAGGEII 746

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I+D G GI   ++ +V   F Q   +     +G GLGL I   ++   GG     S
Sbjct: 747 ASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINAES 806

Query: 461 KLREGVEVIAILPNT 475
           +   G      LP  
Sbjct: 807 EWGRGSVFTVNLPFA 821


>gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 917

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 155/341 (45%), Gaps = 19/341 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-CQ 218
             ++ L    ++VA+    + +  +    L    A+A      +  ++  +N+  +    
Sbjct: 342 RTSLLLCIATLIVAIIVGILTARWITRPILKVSQASAEIAAGKLEQNIEPTNIIEIEKLA 401

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              + +  +L+ + +  ++  +  ++ +  K+ FLA+ SHELRTPLN I+G +E +    
Sbjct: 402 NSFNSMARQLKESFAALEKQNEDLKDLDKLKNEFLANTSHELRTPLNGIIGIAESLIDGA 461

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L   T    +  I  SG+ L NL+N+ILD S++     EL    + L  +    + +
Sbjct: 462 TGELPQSTQAN-LTLIASSGRRLANLVNDILDFSKLRHNNLELRLKPLDLRAVTNVVLTL 520

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            Q  A +K++++   I        ADE  ++Q++ NL+ NA+KFT I G V V+     G
Sbjct: 521 SQPLAAQKDLQLINAIAADFPPAAADEDRLQQILHNLVGNAIKFTPI-GTVTVSAEVVIG 579

Query: 399 RGQY---------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             Q                I++ D G GI   +   +  SF Q   +      G GLGL 
Sbjct: 580 SEQLPITDSQLSTANYQLAITVSDTGIGIPADKFDRIFESFEQAEGSTAREYGGTGLGLA 639

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483
           + + ++  HGG+  ++S+L  G +    LP + V     P+
Sbjct: 640 VTKQLVELHGGKINVKSQLGVGSQFTFTLPASTVKAESTPQ 680


>gi|169334946|ref|ZP_02862139.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257684|gb|EDS71650.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
          Length = 794

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 9/273 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            ++K     +          +E +  K + +E    AE+ N AKS FL SMSH++RTP+N
Sbjct: 372 RVYKIVEDGVKWAFMVLTDESEEQEKKKVLEEALITAEQANRAKSEFLTSMSHDIRTPMN 431

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G   +         + +   + +  I  S +HL+ LI  +LD+S+IE+G+ EL +  
Sbjct: 432 AIVGMVNIAYSNL---DDKKKVADCLDKITLSSEHLMELIQGVLDMSQIESGKLELCKEN 488

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L  +++E   + + +A EK +++   ++    S V  D   + Q+++NL++NA+KFT 
Sbjct: 489 FNLTSLLKEAYEIFKGQALEKGLDLTLDMNKIKHSDVNGDMLRINQILMNLINNALKFTP 548

Query: 385 IGGRVHVTVGW----TSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG V +          G G Y IS+ DNG GIA   I  +   F +   +  S  +G G
Sbjct: 549 AGGFVEIKAEEVYCEEEGYGIYNISVNDNGIGIAPEFIDKLFDPFERAERSTVSKIEGSG 608

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I   +++   G   + S+  +G      L
Sbjct: 609 LGLSIVNRLISLMNGTIDVVSEQGKGSCFTVCL 641


>gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1857

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 163/389 (41%), Gaps = 23/389 (5%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               LLV ++       +  L      T   L +     +   + +++L+ F      FL 
Sbjct: 1011 ARRLLVTEVPATATPVVSGLFRAVPRTAIVLPVLFEGQVKAVIELASLTAFTDLQISFLE 1070

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + +   +I +    +  L      A          L ++N ++     +  D   
Sbjct: 1071 QLTSGIGIVLNSIEATMQTEGLLTQSQQLASELQIR-QRELQQTNEQLEQKAQQLADRND 1129

Query: 227  ELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+E      ++ R+  EE    LA     KS FLA+MSHELRTPLN+IL   + +     
Sbjct: 1130 EVEAKNQEIEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPD 1189

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ E   E+   IH +G  LLNLI++ILDLS+IE+G   +    IS  +++       
Sbjct: 1190 GNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLATTARPF 1248

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +  A+ + +    ++ P L ++  D K ++QV+ NLLSNA KFT  GG V + V   +G 
Sbjct: 1249 RHEAENRRLSFDVEMAPELGTLVTDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGG 1307

Query: 400  G-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                              + D G GI   +   +  +F Q          G GLGL I++
Sbjct: 1308 WSADHPVLKNAPAVVAFEVSDTGIGIPPEKQKIIFEAFQQADAGTSRKYGGTGLGLAISR 1367

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +    GG+  +RS    G      LP  
Sbjct: 1368 ELANLLGGEIQLRSASGVGSTFTLYLPLA 1396


>gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51]
 gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 585

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 4/279 (1%)

Query: 200 FTYITYHLFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                  L+      +  + +E      +L++ +   ++     +E++  K+ FLA +SH
Sbjct: 302 MAKQLKELYSDLEHKVELRTSELGKANEQLQIKQIQLEKVNTLLKEDSQYKADFLAMVSH 361

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL AI+ F+E++  +     ++E     + +I  + + LL++IN ILDL+R+E GR
Sbjct: 362 ELRTPLTAIIIFAEILLKKKRFEDSSEEQ--ILCEIKENSEVLLHMINNILDLARLETGR 419

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             LS   + L+D++     +++  AQ  +I +  +++  +  +  D + +R++I NL  N
Sbjct: 420 NSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVERGVPLIQGDYEKVRRIIENLAGN 479

Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A+KFT +GG+V++            I+++D+G GI++     +   F Q   +      G
Sbjct: 480 AIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISKENQAHIFEKFIQVDSSSSRQYNG 539

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL +A+ +   HGG   + S L +G   I +LP  R
Sbjct: 540 SGLGLALAKELTELHGGVISVESDLNKGSTFIVLLPIER 578


>gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
 gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
          Length = 910

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 17/302 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +     +S       + E +    + E+ +  ++  R  A + N  KS FLA MSHELRT
Sbjct: 373 LKQIAEQSRDDAEVHRVEAERSRDDAELERKEAENARAEAVKANEVKSEFLAKMSHELRT 432

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+G +E++  + +   ++E Y E +  + R+G+HLLNLIN+ILD+S+IEAG+ EL 
Sbjct: 433 PLNAIIGLTEMMHEDAI-EFDDEDYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELH 491

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
               +LI  + + I  ++  + +K+I++    +  L   + D+  ++Q++LNL+SNAVKF
Sbjct: 492 RENFNLIMALEDVIASIKPLSDKKSIKLEGDFE-VLGDHFNDQTRLKQILLNLMSNAVKF 550

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V ++   T      I++ D+G G+ E +   +   F Q   +     QG GLGL
Sbjct: 551 TDE-GVVTLSA-RTENDRLNIAVTDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGL 608

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED-----------NHESTQY 491
            I++      GG   + S++ +G      +P  +    +P D             ES++ 
Sbjct: 609 AISRKFSRMMGGDIFVTSEVGKGSTFTLSIPLNQ--EDVPADLVIEDDGTLEVAQESSEV 666

Query: 492 KC 493
           K 
Sbjct: 667 KA 668


>gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 582

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 4/279 (1%)

Query: 200 FTYITYHLFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                  L+      +  + +E      +L++ +   ++     +E++  K+ FLA +SH
Sbjct: 299 MAKQLKELYSDLEHKVELRTSELGKANEQLQIKQIQLEKVNTLLKEDSQYKADFLAMVSH 358

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL AI+ F+E++  +     ++E     + +I  + + LL++IN ILDL+R+E GR
Sbjct: 359 ELRTPLTAIIIFAEILLKKKRFEDSSEEQ--ILCEIKENSEVLLHMINNILDLARLETGR 416

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             LS   + L+D++     +++  AQ  +I +  +++  +  +  D + +R++I NL  N
Sbjct: 417 NSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVERGVPLIQGDYEKVRRIIENLAGN 476

Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A+KFT +GG+V++            I+++D+G GI++     +   F Q   +      G
Sbjct: 477 AIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISKENQAHIFEKFIQVDSSSSRQYNG 536

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL +A+ +   HGG   + S L +G   I +LP  R
Sbjct: 537 SGLGLALAKELTELHGGVISVESDLNKGSTFIVLLPIER 575


>gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 919

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 162/410 (39%), Gaps = 11/410 (2%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
           F        WSL+  A     +SL  +      ++ +   +     +        W    
Sbjct: 501 FDPISHALFWSLLFNAGLYVGVSLFTQ--QRVEELLQARAFVDVFRLSGRPGEATWRGTA 558

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
            V     +     + +      A              V  +   V  A    A       
Sbjct: 559 YV-----SDLQQLLRRFLGKKQADEALRPVLAQGGGTVTATAEVVQHAERLLAGAIGSAS 613

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              L   +             +     ++++   E +   AELE A        +R +E 
Sbjct: 614 ARVLIASVVKEEPLSLREVMDILDETQQVIAYSHELERKSAELERATRELQAANERLKEL 673

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  F+++++HELRTPL +I  FSE++       L     +E++G I +  + L  LI
Sbjct: 674 DRLKDEFISTITHELRTPLTSIRAFSEIMHANP--NLPEAQRQEFLGIIIKEAERLTRLI 731

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N++L L ++E+G  EL+   + + +++ E +  +Q   Q   I +   +  +   V  D 
Sbjct: 732 NQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITLTVSVPETPCYVLGDR 791

Query: 366 KGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             + QV+LNLLSNAVKF     GR+ V +         + ++DNGPGIA  +  T+   F
Sbjct: 792 DQLVQVLLNLLSNAVKFCNPEDGRIAVRL-LVEPDRVRVDVEDNGPGIAPEDQATIFDKF 850

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q   +      G GLGL IAQ I+ +H G+  + S+   G      LP 
Sbjct: 851 RQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFSFTLPR 900


>gi|254427320|ref|ZP_05041027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196193489|gb|EDX88448.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 591

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 182/457 (39%), Gaps = 16/457 (3%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
           P  D L      +     E +   +    R++      VL VA +           +W  
Sbjct: 4   PESDPLQKNARLETRITAEALRQLLGLSRRLTWSRLAVVLPVAIVHYNAVPLFWLVLWVT 63

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           + LA    +   G++  N       +  W+  LL+ +  +G  W +         TP   
Sbjct: 64  MMLAGILFHEYTGQRFRNEGCDDARLRDWQRILLISRFYLGTVWGVAIYGFYQVDTPALQ 123

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  L++++     +++ LP     +  P+ +AL+   I         LA M+    
Sbjct: 124 IFLVTIALVLSIGNIIPAHYSLPLYHVYA-GPIFLALTLVFIGQNEPFYWVLALMMVWVF 182

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                    L +S  + +  + E DDL A L           + AE+   AKSRFLA+ S
Sbjct: 183 LAGARFARMLNRSFREQIRLRFESDDLSAALARKT-------EEAEQATQAKSRFLAAAS 235

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           H+LR PL+A+  F +V+        +++        +  S   L  L + +LD+SR++A 
Sbjct: 236 HDLRQPLHALSLFVDVLHE----AKSDQERARIFPRVLLSVDALRKLFDALLDVSRLDAR 291

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
             E   S   +  ++ E     Q  AQEK +++     P   +V  D   + +++ NL+S
Sbjct: 292 VVEPDISHFDIGALLIELAAEFQPAAQEKALKLVVHAHPQ--TVMTDRVLLARILRNLIS 349

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAV++T  GG V +++         + + D G GI   +   +   F Q   A +   QG
Sbjct: 350 NAVRYTQAGG-VLLSL-RNRSGKLLVQVWDTGGGIDVHDQDMIFQEFHQLDNAGRDRNQG 407

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +GLGL + + I         +RS    G      +P 
Sbjct: 408 LGLGLALVRRISDLLEHPLTLRSVPGRGSVFSLSIPR 444


>gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1137

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL   +    +  ++A   + AKS FLA++SHELRTPLNA++GFSE+++   + P   
Sbjct: 735 ITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEP--- 791

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EY+G I+ +G  LLNLIN++LDLSR+EA + EL    + +  +VRE + + + +A 
Sbjct: 792 QEQQEYLGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAV 851

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGR 399
           EKN+ +         +++ D+  ++Q++LNL  NA+KFT  GG V V+            
Sbjct: 852 EKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGG-VTVSAVFRLAEEAGQG 910

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLI 458
               SI D G GI   +I  +   F Q S        +G GLGL I++ ++   GG+   
Sbjct: 911 TLIFSITDTGIGILPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSA 970

Query: 459 RSKLREGVEVIAIL 472
            S   +G      L
Sbjct: 971 ESTPGKGSTFTVRL 984


>gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 817

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 134/267 (50%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+E+ K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 417 ITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES----ENT 472

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY   +  + + LL LINEILDLS+IEAG  E S +A+ L  + +E       R  
Sbjct: 473 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRCP 532

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
             ++E+          + +D+  + QVI NL+ NA KFT  G    ++ G+         
Sbjct: 533 S-DVELRFDPSDEDILIDSDKNRIFQVISNLIGNAFKFTTKGS---ISYGYHREGETIVF 588

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  +I  V   F + +       QG GLGL I ++I+   GG+  + S+L 
Sbjct: 589 HVTDTGTGIAPEKIGKVFERFVKANN----FAQGTGLGLAICKTIIERLGGKISVTSELE 644

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G   I  LP     +   E    S +
Sbjct: 645 KGTTFIFTLPAKTTQDEDKEKTENSPE 671


>gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 1165

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 6/298 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L +    +   +   D    EL  A+   ++  +  +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQTQTLAEQRDAMDRKNGELNQAQQELEDRAEELQRSSKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L+ E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     M +  A ++ +    ++ P     ++ D + + 
Sbjct: 555 ISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLAADRKLGFQVQVQPDAPAMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V ++V    G G   S++D+G GIA  +  ++  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEQ-GEVSLSVSRAPGEGIAFSVRDSGIGIAPDQQQSIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPED 484
                  G GLGL I++ + A  GG   + S   +G     +LP     R  +  P +
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGYISVTSAPGKGSTFTLVLPEQYVEREDDAAPIE 731


>gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1839

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/455 (23%), Positives = 181/455 (39%), Gaps = 23/455 (5%)

Query: 40   LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
            L       +S ++PL       I              L++     A     +++   +  
Sbjct: 944  LATVGRTLLSELVPLVGAHQGVIYRVKGGEAGPESLRLLSAYADGARSGHPERLAVGEGL 1003

Query: 100  IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
            IG+       +L+  +       +  L      T   L +     +   + +++L+ F  
Sbjct: 1004 IGQCARDARRMLITDVPPTATPVVSGLFTAVPRTAIVLPVLFEGQVKAVIELASLATFTD 1063

Query: 160  PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                FL      + +   +I +    +  L      A          L ++N ++     
Sbjct: 1064 LQISFLEQLTTGIGIVLNSIEATMQTEGLLKQSQELA-GELQTRQRELQQTNEQLEQKAQ 1122

Query: 220  EKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHELRTPLNAILGFSE 272
            +  D   E+E      ++ R+  EE    LA     KS FLA+MSHELRTPLN+IL   +
Sbjct: 1123 QLADRNDEVEAKNQEIEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQ 1182

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +     G L+ E   E+   IH +G  LLNLI++ILDLS+IE+G   +    IS  +++
Sbjct: 1183 QLSENPDGNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLL 1241

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                   +  A+ + +    ++ P L ++  D K ++QV+ NLLSNA KFT  GG V + 
Sbjct: 1242 AATARPFRHEAENRRLAFDVEVAPELGTLITDSKRLQQVLKNLLSNAFKFTEQGG-VRLR 1300

Query: 393  VGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            V   +G                   + D G GI   +   +  +F Q          G G
Sbjct: 1301 VAPAAGGWSADHPILRQAPMVVAFEVSDTGIGIPPEKQKIIFEAFQQADAGTSRKYGGTG 1360

Query: 440  LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            LGL I++ +    GG+  +RS    G      LP 
Sbjct: 1361 LGLAISRELANLLGGEIQLRSASGVGSTFTLYLPL 1395


>gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae
          Length = 929

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 146 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 205

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 206 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 265

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 266 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 322

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 323 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 378

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 379 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 438

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 439 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 498

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 499 QMGGEIGVDSTPGEGSEFWISLKLPKAR 526


>gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 731

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 145/333 (43%), Gaps = 22/333 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            +V      +         +   +        +    SF   +   L  + +     +  
Sbjct: 388 RSVLTLPLLISGEAVGSITLDSRLPGAYTQDHVTMLSSFIEPLASALRNAQLHAEVVRYS 447

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + L   +EV             + +  K+ FL +MSHELRTPLNAILGFS+++  +T G
Sbjct: 448 HE-LERLVEVRTRELQIANGHLADASRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFG 506

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           PL       Y   I  SG+HLL LIN++LDLS++EAG+  L      L + +   +  +Q
Sbjct: 507 PLT-AKQARYANHIQTSGRHLLALINDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQ 565

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------ 394
             A  K + I   ID +  ++ AD    +Q+I NLLSNAVKFT  GG + V+        
Sbjct: 566 PVADAKRLTIVPDIDTAPITLTADPVRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRES 625

Query: 395 -------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
                          SG    I++ D G GIA  ++  + T F Q  I      QG GLG
Sbjct: 626 GVEAPPHPIPTTLHHSGDFVEIAVTDTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLG 685

Query: 442 LPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           L + + ++  HGG   + S    +G      LP
Sbjct: 686 LALTKQLVELHGGTITVTSAGPGQGSRCTVRLP 718


>gi|197105542|ref|YP_002130919.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
 gi|196478962|gb|ACG78490.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
          Length = 1952

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 168/401 (41%), Gaps = 25/401 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L   G +    +         I + ++ ++  M    +   
Sbjct: 1115 AHIIVLPALFEGEVKAVIELATFGEFNETQMAFLDQLMESIGIVLNTIAANMRTEGLLKQ 1174

Query: 167  FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L  Q   +   +      A  L  +          L ++N ++          
Sbjct: 1175 SQLLTSELQAQQEELKKTNDRLEQQAASLRQSEELLRTKQEELQQTNAELQEKAHLLSIQ 1234

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              ++E      ++ +   EE        +  KS FLA+MSHELRTPLN++L  S+++   
Sbjct: 1235 NQQVEAKNREVEQAKLALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADN 1294

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              G L+++   E+  +IH +G  LL LIN+ILDLS+IE+G   L    ++   +  +   
Sbjct: 1295 AQGNLSDKQV-EFARNIHDAGADLLGLINDILDLSKIESGTVTLDIGEMAFAGLKDQVDR 1353

Query: 338  MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
                 A +K +E   ++D +L   ++ D+K ++Q+I NLLSNA KFT   G V + +   
Sbjct: 1354 TFAQIAADKKLEFQVELDGALPRSMYTDDKRLQQIIKNLLSNAFKFTEK-GHVKLKIARA 1412

Query: 396  ------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                        T+G+    S++D G GI E +   +  +F Q          G GLGL 
Sbjct: 1413 HGGWSSTNDHLNTAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLS 1472

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            I++ I    GG+  + SK  +G      LP        P  
Sbjct: 1473 ISREITRLLGGELKVESKPGKGSTFTLYLPLNFSPAQAPSA 1513


>gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 933

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 140/277 (50%), Gaps = 20/277 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ + A+      ++ AE  N AK+ FL +MSHELRTPLNAILGF++++     G    
Sbjct: 430 ISDRKQAEEELVRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLL---NYGDNLT 486

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E     +  I RSG+HLL+LIN+ILDLS+IEAGR  +S+    L  ++ E   +  L+A 
Sbjct: 487 EHQHNNLNIIQRSGEHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKAS 546

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------S 397
           +KN+ +     P L   +  D   +RQ+++NL+ NA+KFT   GRV +T           
Sbjct: 547 QKNLYLDCVYSPDLPRYIRGDRLKLRQIMINLIGNAIKFTEQ-GRVVITADHKFISSSPP 605

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I++ D+G G+   EI  +   F Q    I S  +G GLGL I Q  +   G +  
Sbjct: 606 ICCLQIAVTDSGVGMTPEEIAQLYEPFFQAQAGIDSQ-EGTGLGLTICQKYLQLMGAEIE 664

Query: 458 IRSKLREGVEVIAIL--------PNTRVLNFIPEDNH 486
           + S++  G      L        P  + L   P+   
Sbjct: 665 VISEVGHGTTFKFKLKVVVSEYNPRAKNLKPSPKPQQ 701


>gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 793

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 141/274 (51%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE       E  K AE+ N AKS FLA MSH++RTP+NAI+G + + +   
Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSNFLARMSHDIRTPMNAIMGMATIAKAHV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                +E   + +  I+ + + LL+LINE+LD+S+IE+GR  LSE   ++ +++++ ++M
Sbjct: 311 ---DEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367

Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q   + K   +   +      +V  D + ++QV++N+LSNA+K+T   GR+ + +    
Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427

Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       +DNG G+    +  +   F + S       QG GLG+ I+  I+   G
Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S+  +G      +P     +  P+D  E
Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520


>gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 733

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 321 QYQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 380

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  S   L  I+   
Sbjct: 381 KDELTT----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSI 436

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ++ NLLSNAVKFT   G V V + 
Sbjct: 437 KSIYSSLCYEKGLKFQLHSEISDTRWYYGDKARLRQIVFNLLSNAVKFTEK-GFVSVGLM 495

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                 G    I ++D+G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 496 EEKTHDGNYLTIKVQDSGIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAEL 555

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  ++ S++  G            +    ++  + T+ K Y
Sbjct: 556 MNGSVVVHSEVGRGTCFEVK--VKLSITEPIKEEFKPTKAKTY 596


>gi|229143715|ref|ZP_04272137.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
 gi|228639771|gb|EEK96179.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
          Length = 883

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 603

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 143/266 (53%), Gaps = 3/266 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+        + +  E  N  K++FLA+ SHE+RTPL++I+GF+ ++  +   P   
Sbjct: 209 IQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDP-TR 267

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E + EY+  I  SG+HLL LIN+ILDLS+IEA + E+    +++ ++ +  + +++ +A 
Sbjct: 268 ERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAA 327

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K +++  ++DP + +  AD   ++Q++LNLL NA+KFT   G V + V        + +
Sbjct: 328 NKGVKLSLELDPHIKTFVADPLRLKQMLLNLLFNALKFTNQ-GTVGLKVTQRES-FIHFT 385

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+   +  +   + Q   +  +  +G GLGL + + +   H G   + S++  
Sbjct: 386 VWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVDH 445

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490
           G     ILP  +    +  ++ E  +
Sbjct: 446 GSRFTIILPLQQNGQVLVGEDMEDEE 471


>gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18]
 gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18]
          Length = 584

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 35/355 (9%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                + L  Q  +     D+ +       +     +     +    +     E   ++A
Sbjct: 90  TAVQALRLGAQDYLFKPFDDLEMVVATVDKVMERRRLVEEHDRLVRSLADLAIENTRILA 149

Query: 227 ELEVAKSLSDE--TRKRAE--EENLAK---------------------SRFLASMSHELR 261
           EL  A S  +E    + AE  + NL +                     S+FLA+MSHE+R
Sbjct: 150 ELRCANSDLEEKVAERTAEISKANLQQKAIIAELREAKEAAEAANRAKSQFLANMSHEIR 209

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N +LG +E++    +    +   + Y   +HRSG+ LL +I++IL++S+IEAG+ E+
Sbjct: 210 TPMNGVLGMAELLLHTEL----DGKQRSYAEMLHRSGESLLGIISDILNISKIEAGKLEI 265

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L +  R  + + +   + K + I  +I P +      D   +RQV++N+++N +
Sbjct: 266 ERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRLRQVLINIINNGL 325

Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  G  R+ VT+   SG G Y    IKD G GI    I  +   F Q   +      G
Sbjct: 326 KFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQVDGSTTRKYGG 385

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQ 490
            GLGL IA+ ++   GG+  + S+  +G     I+         P  E+  E+ Q
Sbjct: 386 TGLGLAIAKQLVELMGGEIEVESEPGQGSTFTFIVYLNEAPARAPEREEAVEAPQ 440


>gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1044

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 19/326 (5%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               +++  S +   S     ++LAG       +++ I         ++L C  +  +L+
Sbjct: 535 FLQGLLLIASGETSFSFEREHVTLAGQNLKTQLYWSVIP-GYEVDYSRVLVCIVDITELV 593

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              E       + +++AE  N AKS FLA+MSHELRTP N I+G  +V++   +    ++
Sbjct: 594 NIQE----ELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQNTDL----DD 645

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E++    +S +    L+++IL+LS IEAG+  +  +  SL +++     +      +
Sbjct: 646 EQQEFVNLSIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSGLFSAEGHQ 705

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSGRGQY 402
           K + +   +D ++   V  D   ++QV+  L+ NA+KFT  G  +V +T +  T G    
Sbjct: 706 KGLALEFLMDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLSATKGGDVR 765

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G GI E  +  +   F Q   +     QG GLGL + + ++    G   + S
Sbjct: 766 VQFSVFDTGIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLMNGNISVES 825

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486
           ++  G  V  +LP       +P  +H
Sbjct: 826 EVDRGTTVHVVLPFA-----LPPVDH 846


>gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 785

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 138/309 (44%), Gaps = 5/309 (1%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P          +      + +  +L + +  F      L ++    +S       +   
Sbjct: 458 APYNARSVLALPIFGTAGILGILMLLHSEVDHFRQEHSELMEAATAQISFAIGNAHVYQT 517

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +         +  AE  +  KS+FLA+MSHELRTPL AI+G+++V+  + +   N++ Y
Sbjct: 518 QQQLTRELSRAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDS-NDQIY 576

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              +  I  +G HLL LIN++LDLS+IEAG+  +      +  ++ + I  ++ +    +
Sbjct: 577 LADLDRIRSAGAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNH 636

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYIS 404
             +           W D   +R+V++NLL NA KFT   G + +++            I 
Sbjct: 637 NSLMIDQTYHNLMFWTDISKLRRVLINLLGNAAKFT-DHGTISLSLFLDETDEPACLQIR 695

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+   ++  +  +F Q   +      G GLGL I++++    GG   + S+L  
Sbjct: 696 VCDTGIGMTAEQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGH 755

Query: 465 GVEVIAILP 473
           G   I  LP
Sbjct: 756 GSTFIVKLP 764


>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1041

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 146/278 (52%), Gaps = 6/278 (2%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   +   +++  +        I   ++ +    + ++ AE  + AK+RFL+SMSHEL
Sbjct: 622 MLLGVSVSSFHLEESAVCVAVVRDITARKMEEIELKQAKEVAERASAAKTRFLSSMSHEL 681

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAILGF++V++ +   PL+ E+ +E   +I ++G HLL LIN++LDL++IE  R  
Sbjct: 682 RTPMNAILGFAQVMQSDPNEPLS-ESQRECTREIIQAGGHLLELINDVLDLAKIEENRIS 740

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLS 377
           L  + + + +++RE + ++   A  K I ++  +   +     V AD   ++Q+++NL +
Sbjct: 741 LKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGEGVCERCDVQADRTRLKQILINLAT 800

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           N VK+   GG V ++          I ++D G GIA  +   +   F +         +G
Sbjct: 801 NGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIAALKQGDIFEPFHRLVEDGT--IEG 858

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            G+GL I + ++   GG   + S+  +G      LPN+
Sbjct: 859 TGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLPNS 896


>gi|332705094|ref|ZP_08425176.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L]
 gi|332356044|gb|EGJ35502.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L]
          Length = 910

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 163/392 (41%), Gaps = 25/392 (6%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN---------FMLPY 161
           +  Q+        L L            ++     LI    S +                
Sbjct: 303 IASQMLSAALDGRLLLRVWYV---NAQGLWIFCCSLIGAVGSWVLPETNWLRKHLLSKLI 359

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
              L    ++V  S    ++   + +    +     +     T + ++        Q   
Sbjct: 360 LSILMTGGMIVGGSYLVFLTGWWIPVISPLIALCLSAILGTNTQNQWQLKQANQQLQDYS 419

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L  +++      +  +  A+  N AKS FLA+MSHELRTPLN ILG++++++  +   
Sbjct: 420 RTLEVKVKERTQELETAKVAADVANQAKSEFLANMSHELRTPLNGILGYAQILKRSSNIS 479

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++    + IG IH+ G HLL LIN+ILDLS+IEA + EL +S I     +   + + ++
Sbjct: 480 KSD---LDGIGIIHQCGSHLLTLINDILDLSKIEARKLELHKSDIHFTSFLMGVVEICRI 536

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----- 395
           RAQ+K I      +P L   ++ DEK +RQV++NLL N +KFT   G V   V       
Sbjct: 537 RAQQKGISFIYHAEPQLPVGIYGDEKRLRQVLINLLGNGIKFTDT-GSVTFQVSLIGSSL 595

Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      I+D G G+   ++  +   F Q     K   +G GLGL I+  +++  G
Sbjct: 596 NGDPSHTIRFQIEDTGVGMTPEQLKKIFLPFEQVGD-TKKQSEGTGLGLAISMKLISLMG 654

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            +  + S L EG      L          ++ 
Sbjct: 655 SEIKVESTLGEGSRFWLDLELATTTESPQQET 686


>gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 1479

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 12/270 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   +  + +  + +++AE  + AKS FLA+MSHE+RTPLN +LG +E++    + P   
Sbjct: 802  ITTRKETELVLQKAKEQAELTSKAKSDFLATMSHEIRTPLNGVLGMAELMSHTDLSP--- 858

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                  +  I  SG+ LL LINEILD S+IEAG   L     +L   + +   +L ++A+
Sbjct: 859  -EQLTQLDVIRDSGEGLLELINEILDFSKIEAGHLVLESIDFNLEKAIFDIAHLLIVKAE 917

Query: 345  EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399
            +K IE+  + +     +   D   ++Q+I NL+SNA+KFT+  G V + V      + G 
Sbjct: 918  DKGIELLVEFEQRCPRMLVGDVYRIKQIITNLVSNAIKFTSE-GEVVIRVSGKPLPSGGV 976

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +S+ D G GI E     +  +F Q   +      G GLGL I   +     G   + 
Sbjct: 977  DLRLSVSDTGIGIQESVQRNLFKAFTQADSSTTRQYGGTGLGLAITSQLTNLMDGTIEVE 1036

Query: 460  SKLREGVEVIAI--LPNTRVLNFIPEDNHE 487
            S+L +G        LP + +   + ++  +
Sbjct: 1037 SQLGKGSCFSVSMVLPKSHLSESVEKEASQ 1066


>gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1049

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 667 ITPRKRLEQDLRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAET----DEE 722

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYI  I  +   LL LI +ILDLS+IEAG  E + S   L +++ E   +++++  
Sbjct: 723 QEKREYISIIENNNALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTA 782

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           E  +E+  +         +D   + Q+++NLL+NA KFTA G    +  G+ +       
Sbjct: 783 E-GVELIFEPGLDACLFHSDRNRLSQLLINLLTNAAKFTAKGS---IRFGYRAEGSRLRF 838

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI       +   F +      S +QG GLGLPI +SI+ + GG+  ++S+  
Sbjct: 839 YVSDTGCGIPPEGQRRIFDRFVKL----NSFKQGTGLGLPICKSIVEHLGGEIGVKSEEG 894

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 895 RGTTFWFTLP 904


>gi|254442776|ref|ZP_05056252.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257084|gb|EDY81392.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1251

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 17/353 (4%)

Query: 147  IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL-SFFTYITY 205
            + L+I  L  +    A       V++AL     + +          L   +    + +  
Sbjct: 771  VHLNIEVLPPYWKTGAFRAILVIVIIALLVGTYLYLTRQQRLRRIKLEGLVKDRTSELEQ 830

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +   +    +A +++L  ++++     ++ + +AEE +  KS FLA+MSHE+RTP+N
Sbjct: 831  ANQQLAKQSQELEAHQENLEEQVQLRTRELEKAKLQAEESDQLKSSFLANMSHEIRTPMN 890

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            AI+GFS ++      P   E   EY   I  +   L +LI++ILDLS IEAG+ ++ +  
Sbjct: 891  AIIGFSNLLCQRDNDPDEEE---EYSNIIQSNCTSLSHLIDDILDLSIIEAGQLQVKQED 947

Query: 326  ISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
              L  ++RE   + + + ++++     + + + +    S +  D   +RQ++ NL+SNA+
Sbjct: 948  FDLNSLMRELDNVFRAQLKQESREHLALRVEEHLGERSSYILCDRDRLRQILTNLISNAL 1007

Query: 381  KFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            KFT+ G   +V+  +T   +       ++D G GI    + ++   F +     K   +G
Sbjct: 1008 KFTSTG---YVSARYTIDPAAGKIRFEVEDTGIGIEAKHLDSIWVQFRKIEDHTKQLFRG 1064

Query: 438  VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHES 488
             GLGL I ++++   GG   ++S   EG      +P   +R  +  P++   +
Sbjct: 1065 TGLGLAITKTLVQLLGGSITVQSTPNEGSCFKFEIPYVPSRKKSTEPKNTASN 1117


>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 524

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 12/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++ +      + RAE    +KS FLA+MSHELRTPL AI+GF+E++  E       
Sbjct: 120 ITERDLIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLAREG---SLA 176

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + ++  I  + + L +++N++LD S++E G  EL      L  +V + + +L  +A+
Sbjct: 177 PQERHWLARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAE 236

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K + +   +D  L   +  D   +RQ++LNL+ NAVKFT  GG V + V    G G   
Sbjct: 237 RKGVGLAIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGG-VTIRVSEDVGAGGPP 295

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +I D G GI +  +  V   F Q   ++     G GLGL I + ++   GG+  + 
Sbjct: 296 QVRFAISDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVE 355

Query: 460 SKLREGVEVIAIL---PNTRVLNFIPED 484
           S++  G      +   P   V     ED
Sbjct: 356 SRVGSGSTFWFSVALAPAAHVEQPGAED 383


>gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
 gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
          Length = 773

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 146/344 (42%), Gaps = 25/344 (7%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              L++ L  +AL   +L   V      +V A     I    +       M         
Sbjct: 170 IILLILCLGGTALFAHVLVRKVTQPLSYMVKA--VDRIRQGQLNSRVTGAM----PGELA 223

Query: 202 YITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENLAKS 250
            +   +      +   + E    I            +LE+        +KRA+E    K+
Sbjct: 224 ALQNGINTVAESLSKYKDEMQLHIDQATSDLQITMEQLEIQNVELTIAKKRAQEAVRIKT 283

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN ++GF+  +    +         EY+  I RS  +LL +IN+ILD
Sbjct: 284 EFLANMSHELRTPLNGVIGFTRQMLKTPITS----QQMEYLYVIDRSANNLLKIINDILD 339

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
            SR+E+ +  L +    L D V E I +L   A  KN+ +   ID  L ++   D   ++
Sbjct: 340 FSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVKNLPLHHHIDDKLPNLMIGDPIRLQ 399

Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQ 426
           Q++ NL+ NA+KFT  GG  + + +         I  ++ D G GI     P +  +F Q
Sbjct: 400 QILTNLIGNAIKFTDKGGVTLDIKLRQQQHHLIQIDFTVTDTGIGIKPEHRPILFQAFNQ 459

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              +I     G GLGL I + ++    G+    S++ +G     
Sbjct: 460 ADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEVSKGTVFYF 503


>gi|30019163|ref|NP_830794.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29894706|gb|AAP07995.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 896

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 593

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 8/257 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E + +AE     KS FLA+MSHE+RTPLN I+GF+ ++    +     E  +     I
Sbjct: 206 LVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILSDLKLSTEAKEQVR----YI 261

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              G+ L  +IN+ILD S+I AG+  + +S  ++ + V   I +       + I++   I
Sbjct: 262 KECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKIDI 321

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQYISIKDNGP 410
           +  +  +   D   ++QV+ NL+ NAVKFT  G   V V V   S         +KD G 
Sbjct: 322 ESDIPDILSGDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKVVQKSDSYFKLQFKVKDTGI 381

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +     +  SF Q  ++      G GLGL I++ ++   GG+  + S+   G E   
Sbjct: 382 GIRQEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEGVGSEFSF 441

Query: 471 ILPNTRVLNFIPEDNHE 487
            +        +P ++ +
Sbjct: 442 TVMTYTSEEEVPTESKK 458


>gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 587

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 133/281 (47%), Gaps = 16/281 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L    +++    A++              +  R++AEE +  KS FLA++SHE+RTPLN 
Sbjct: 297 LTDVELELAKEFADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNG 356

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++GF ++I        + E   ++  + H    HLLN+IN+ILD+++IEAG+ EL  S +
Sbjct: 357 MIGFLKLILEGM--ADDPEEQHQFTSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPV 414

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            L ++  +    L+ +A+ +N+     + P      V  + + + QV+LNL +NA+KFT 
Sbjct: 415 KLNELFEDVENFLRPQAESRNLSFRMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQ 474

Query: 385 IGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            GG + V+                    + + D G G++  +   +   F Q   +    
Sbjct: 475 EGG-ITVSADLVLKQVEFQKQQFPGMVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQ 533

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
             G GLGL I+Q ++   GG+    S     G  V   +P 
Sbjct: 534 YGGTGLGLAISQKLIEAMGGEVHFYSLGEGLGSTVTFTVPL 574


>gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 837

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 54  RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 113

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 114 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 173

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 174 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 230

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 231 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 286

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 287 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 346

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 347 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 406

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 407 QMGGEIGVDSTPGEGSEFWISLKLPKAR 434


>gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
 gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
          Length = 1392

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 31/379 (8%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L          + I     +L  + +++ S F   +  F++     + ++   I++   
Sbjct: 820  GLSSSVPAQIVVVPILFETQVLGVVELASFSQFGEVHHDFMTQLVETIGVTMNTIIANSR 879

Query: 185  LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------E 237
             +  L              +  L +   ++    AE +D  A L       +       +
Sbjct: 880  TEDLLTESQRLTTELQER-SDELQRQQEELRRSNAELEDKAALLAKQNRAIEIQNFQIEQ 938

Query: 238  TRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             R+  EE        +  KS FLA+MSHELRTPLN++L  ++++     G L  +   E+
Sbjct: 939  ARRTLEERAEQLAVSSRYKSEFLANMSHELRTPLNSLLVLAKLLTENAEGNLTVQQV-EF 997

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
               IH +G  LL LIN+ILDLS++EAGR ++    ISL  +V          AQ+K +  
Sbjct: 998  ARTIHGAGSALLQLINDILDLSKVEAGRMDIHPQQISLPKLVDYFEATFAPLAQDKGLSF 1057

Query: 351  FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------------GWT 396
              ++D S+   +  DE+ ++QV+ NLLSNA+KFT   G V + V                
Sbjct: 1058 AVEVDSSVPQELRTDEQRLQQVLRNLLSNAIKFTPK-GEVRLRVIHAQRAVAFVDDTLRG 1116

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            +       + D G GIA  ++  +  +F Q          G GLGL I + I    GG+ 
Sbjct: 1117 ADGILAFEVVDTGIGIAADKLEVIFEAFRQADGTTSRKYGGTGLGLSICREIARLLGGEI 1176

Query: 457  LIRSKLREGVEVIAILPNT 475
             + S++ +G      LP +
Sbjct: 1177 HVVSEVGQGSTFTLYLPPS 1195


>gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
 gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
          Length = 693

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +         RK+AE  N AKS FLA MSHE+RTPLNA+LG  + +    +    +
Sbjct: 307 ITNRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----D 362

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E++  + +S Q LL +IN+ILDLSRIE+G++EL  + I + D V   +  L  +A+
Sbjct: 363 KKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNTDICIADSVSLVVNQLNEQAK 422

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            KNI +  +ID S+  S+  D+  + QV+ NL+ NA+KFT + G V V+V         I
Sbjct: 423 RKNITLTTQIDESVPGSMLGDKNRITQVMFNLIGNAIKFTNV-GSVRVSVKAV-NNHIEI 480

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA     T+   F Q   +I     G GLGL I+  ++    G   + S L 
Sbjct: 481 AVTDTGIGIAPYAQNTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSMLN 540

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G      +P T V+    ++  E 
Sbjct: 541 VGSCFTVSIPITSVIGTTEKELPEQ 565


>gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 833

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 9/315 (2%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
            HV  + +         F+  I     +   +           I++ +  +    +    
Sbjct: 263 GHVEGMEMLLKRVGGEEFWALIASQ--RVEFEGRPAMINGLADISDRKRMEGELHKAIWA 320

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           +E+   AKS F+A+MSHELRTPLNAI+G+SE++  +           + +  I  +G+HL
Sbjct: 321 SEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMAD-LRKIQDAGKHL 379

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L LI+ ILDLS+IEAG+  L      L  ++      +   A++    +       + ++
Sbjct: 380 LGLIDNILDLSKIEAGKMTLYLETFELRPMIDSVAATVTPLAKKTGNALVANCADEIGTI 439

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIP 418
            +D   +RQ + NLLSNA KFT   G + +T       +G      ++D G G+   +  
Sbjct: 440 HSDLTKVRQTLFNLLSNACKFT-RNGTITLTALRDTNAAGEWIEFQVRDTGIGMTPDQQA 498

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            V  +F Q   +      G GLGL I +S     GG   + S+  +G   +  LP   V 
Sbjct: 499 KVFEAFTQADDSTTRVYGGTGLGLAITKSFCRLMGGDVTLTSEAGKGTAFVVRLPA--VT 556

Query: 479 NFIPEDNHESTQYKC 493
               +    +   + 
Sbjct: 557 RAASDTTVSAADKRS 571


>gi|323496614|ref|ZP_08101667.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318360|gb|EGA71318.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 810

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 7/258 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + Q E   LI          +  +  A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 320 NSQDEIKHLIDTFNQKTVFLEAEKVTAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 379

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +E  ++++  ++ SG H++ L+NEILD S+IE G  EL      L  I+   
Sbjct: 380 KTPL----SEEQRKHLNTLYESGDHMMTLLNEILDFSKIEQGHLELENHPFPLESIIGSI 435

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTV 393
             +      EK ++     + P+     +D+  +RQ++ NLL+NAVKFT+ G   V+++ 
Sbjct: 436 NSVYYTLCAEKGLQFKVISEVPAERWYRSDKARLRQILFNLLNNAVKFTSRGYVEVYISE 495

Query: 394 GWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
             T+     +I I+D G GIA+     +   F Q   +      G GLGL I + +    
Sbjct: 496 KQTADAEYLHIRIRDTGIGIAKEAQEKIFKPFEQAETSTTRRFGGTGLGLAIVKQLCELM 555

Query: 453 GGQFLIRSKLREGVEVIA 470
            G   + S+L  G     
Sbjct: 556 DGDVHLTSELGIGSCFEV 573


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 28/281 (9%)

Query: 203  ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
            +   +  +  +    + E        E      ++ R+ AE  N AKS FLA+MSHE+RT
Sbjct: 996  VAAQVGITLAQAHLLETEVKRQEQLAEQ-NEALEQARQAAEVANRAKSEFLATMSHEIRT 1054

Query: 263  PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
            P+NA++G + ++    + P      ++++  I  SG  LL +IN+ILD S+IE+G+ +L 
Sbjct: 1055 PMNAVIGMTGLLLDMDLTP----EQRDFVETIRTSGDALLTIINDILDFSKIESGKMDLE 1110

Query: 323  ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
            +    L   + E + +L  +A EK +E+   ID S+   V  D   +RQ+++NLL NAVK
Sbjct: 1111 QHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVK 1170

Query: 382  FTAIGGRVHVTVGWTSGRGQY---------------------ISIKDNGPGIAEGEIPTV 420
            FT   G + V+V       ++                     I++KD G GI    +  +
Sbjct: 1171 FTEA-GEIVVSVTARKISERHGEELYKLPLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRL 1229

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              +F Q   +      G GLGL I+Q +    GG+  + SK
Sbjct: 1230 FKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVSK 1270


>gi|315125164|ref|YP_004067167.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013677|gb|ADT67015.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 908

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 10/312 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L+   +  A  T  +      +          L              + +L    +   L
Sbjct: 455 LTTITINFAGQTWLVDLTIKDEFLPHQTNNMTLFLLILQVIVSSLILLILLLFNNQHLAL 514

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              +        + +++++  N AKSRFLA+MSHE+RTPLNA++GFS + + E     + 
Sbjct: 515 SRLVAERTRSLVKAKQQSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKSE----DSA 570

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET   Y+  I+ + + LL+LIN++LD+S+IE+ +  L  +   L  ++     M +  A+
Sbjct: 571 ETLTGYLNKINLASKSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAE 630

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
           +K I        P+      D   + Q++LNL SNA+KFT   G V V+          R
Sbjct: 631 QKGINWKVDNQLPTDIWFEGDVMRIEQILLNLCSNAIKFTYE-GEVSVSAYSKEITDRRR 689

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++IKD+G GIA  E   +  +F Q   +      G GLGL IA+ +     G   ++
Sbjct: 690 QITLTIKDSGIGIAPSEQSKLFDAFTQADSSTSRKFGGTGLGLAIAKELSLLMSGDISVQ 749

Query: 460 SKLREGVEVIAI 471
           S+  +G      
Sbjct: 750 SEPGKGSTFTLS 761


>gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii]
          Length = 909

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 18/401 (4%)

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
           Y   +    + +  ++   E      W+ V     G+       +  G  +     +  +
Sbjct: 125 YLLPVFGRHRNLAGELIPDEADRLLGWVEVELSHNGM-------LLRGYRSLFASLLLIA 177

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             L+   +++   +  +   +     PV           +  L       LA+ ++    
Sbjct: 178 IGLICTAALAVRISRTINSPIGQIKQPVAQLKDGNLETCLAPLGSQELDQLASGINRMAE 237

Query: 203 ITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              +  +     +    E     +  +E+     D  RK A E +  KS FLA+MSHE+R
Sbjct: 238 TLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIR 297

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILGF+ +++   + P + +    Y+G I +S  +LL +INEILD S+IEAG+  L
Sbjct: 298 TPLNGILGFTHLLQKSELSPRHVD----YLGTIEKSADNLLGIINEILDFSKIEAGKLVL 353

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAV 380
                +L D++++ + +L   A  K +E+       +  +V  D   ++Q++ NL+SNA+
Sbjct: 354 DSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQILTNLISNAI 413

Query: 381 KFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  G  V    V           IS++D G G++  ++  +  +F +   ++     G
Sbjct: 414 KFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFTEADNSLSRQPGG 473

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476
            GLGL I++ ++   GG+  + S   EG E      LP TR
Sbjct: 474 TGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 514


>gi|229042838|ref|ZP_04190574.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
 gi|228726498|gb|EEL77719.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
          Length = 883

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 632

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 163/384 (42%), Gaps = 23/384 (5%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
             L       P    + +    +   + S     +L  AV L+ F +         ++ +
Sbjct: 131 FLLSNSQAAAPAEDYLGRVLVGMSGEAFSTRQQEILLKAVILALFALGFTYLLARRLASN 190

Query: 184 VLD--------ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           +          +                   L    + I +  A  +    E + A +  
Sbjct: 191 LSRPISDMSKAVKAIQQGDYTRPLPVVDDGELGSLALHINNLAAGLEQASREQQSAIAQL 250

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R+ AE  N AK+ FLA MSHELRTP+N +LG  +++E   M     E   EY     
Sbjct: 251 IQAREEAERANRAKTDFLAMMSHELRTPMNGVLGMLQLLETTRM----TEEQAEYAALAS 306

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S +HLL +IN+ILD SRIE    EL     +L ++V  C    Q  A ++ + +   I 
Sbjct: 307 ESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSNCAQAFQHNAAQRGLHLQLTIP 366

Query: 356 PSLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNG 409
             L  +    D   +RQ+++NL+ NA+KFT   G+V +   W     Q I    +++D+G
Sbjct: 367 DGLQDLPALGDPTRIRQILVNLIGNALKFT-EHGQVSIEPQWQRLDHQLIWFSCAVRDSG 425

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI+  ++ ++ T+F Q   +I     G GLGLPIA+++    GG     S+  +G    
Sbjct: 426 IGISSEKLDSMFTAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLHALSEEAQGSVFT 485

Query: 470 AILPNTRVLNFI----PEDNHEST 489
             +P       +    P+   E++
Sbjct: 486 LEIPLELHQPVMLGLKPQQTAETS 509


>gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426]
 gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 542

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 138/251 (54%), Gaps = 8/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++ +      ++ AE+ N AKS  ++ MSHE+RTPLN +LGF++++E   M P   
Sbjct: 147 ITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLE---MDPSLK 203

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++ +I    +HLLNLINE+LDL+RIE GR  L+   +   DI++E I +++  A 
Sbjct: 204 GRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLAN 263

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +KNI+I  +        ++ D   +RQV+LNLL NA+K+   GG V +   +   +   I
Sbjct: 264 KKNIDIQARSSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEK-VVI 322

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KDNG GI + E   +   F +      +   G G+GL   + I+   GG   ++SKL 
Sbjct: 323 HVKDNGIGIPDEEQENIFEPFYRIKG---THVDGNGIGLAFVKQIIRLLGGTIEVKSKLG 379

Query: 464 EGVEVIAILPN 474
            G +    LP 
Sbjct: 380 VGSDFSFSLPA 390


>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1118

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 8/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    +   RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 560 VTELKGREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 616

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K ++  I +SG  LL +IN+ILD S+I+AG+ +L ++A  + + V +   +L   A 
Sbjct: 617 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 675

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401
           EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V     +G    
Sbjct: 676 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIM 735

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I+D G GI   ++ +V   F Q   +     +G GLGL I   ++   GG   + S
Sbjct: 736 ACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 795

Query: 461 KLREGVEVIAILP 473
           +  +G      LP
Sbjct: 796 EWGKGSVFTINLP 808


>gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 767

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 112/269 (41%), Positives = 159/269 (59%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   AEL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 498 RRLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 557

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG  +L   
Sbjct: 558 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLKLHRE 617

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   L ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 618 RIDLVPLIEESLRFTAIPAAEKNIVIEQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 676

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V          +++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 677 DGGRIAVRTRRV-DGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 735

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ + HGG+  IRS+   G  +   +P
Sbjct: 736 SRSLTSLHGGRMKIRSREAVGTVISLRIP 764


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 16/303 (5%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLA 248
           A +   A+           +   ++      K  +   EL VA +   + +  AE    A
Sbjct: 472 AVVGVGAVGIDITDQERANRELKEMSQTLEHKVWERTRELAVANAELAKAKHEAESAAQA 531

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+NA++G + +     +    +   ++Y+  I RSGQHLL ++N+I
Sbjct: 532 KASFLANMSHEIRTPMNAVIGMAHLALSTQL----DPQQRDYVEKIQRSGQHLLGILNDI 587

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDLS+IEAG+ E+ +   SL  ++R    ++  RA  K +E+   + P +  S+  D   
Sbjct: 588 LDLSKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPDSLRGDPLR 647

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVL 421
           +RQV++N  +NAVKFT   G + + V   +G         +  ++D G GI    IP + 
Sbjct: 648 IRQVLINFTTNAVKFTER-GEIVIRVARCAGEHAESRVRLHFEVRDTGIGIDADAIPRLF 706

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI---LPNTRVL 478
            SF Q   +      G GLGL I+  ++   GG   ++S+L +G         LP TR  
Sbjct: 707 RSFEQADSSTTRRYGGSGLGLAISHRLVTLTGGTIGVQSELGKGSTFWFELSLLPGTRRA 766

Query: 479 NFI 481
             +
Sbjct: 767 PAL 769


>gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 896

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSYDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +   T  L                 +   +  +      ++ AE  N AKS FLA+MSHE
Sbjct: 376 WAAGTARLTTGEDGRPLRLVGAMQNVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHE 435

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN +LG ++ + ++ + P      +E +  I +SG+ LL ++N++LDLS+IEAG+ 
Sbjct: 436 IRTPLNGVLGMAQAMAMDELSP----AQRERLDVIRQSGESLLAILNDVLDLSKIEAGKL 491

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
           +L E+   + ++VR         A+ K +     +  +   ++  D   +RQ++ NL+SN
Sbjct: 492 DLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNARGLYRGDPIRVRQILWNLVSN 551

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            +KFT   G V V V   +       ++D G GIA  ++  +   F Q   +      G 
Sbjct: 552 GLKFTDR-GAVEVRVRR-AQGLLAFEVRDTGIGIAPEQLANLFRKFEQADASTTRRFGGT 609

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           GLGL I + +    GG+    S   +G      LP  +V
Sbjct: 610 GLGLAICRELAGLMGGEIAAESARGQGARFTVSLPLEKV 648


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E  KE    I+     +  
Sbjct: 358 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEEKKEIAQVIYDESLRMGR 415

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG   L+   + L +            A +KNI +   +D   +    
Sbjct: 416 LVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDLHEAKFVF 475

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QV+ NL+ NA++ T  GG VHV V  ++  G  I++KD+G GI E ++P +   
Sbjct: 476 DPDKMEQVLTNLIDNAIRHTNAGGTVHVDV-QSAESGLKIAVKDSGSGIPEEDLPFIFER 534

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A    + G GLGL I ++I+  H G   + S L EG      +P  +
Sbjct: 535 FYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIPRNK 587


>gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
 gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
          Length = 896

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN++   K   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVDFTVKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             + +  P++ +E T
Sbjct: 749 ATIEDVTPDEVNEET 763


>gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1043

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMSHELRTPLNAILGFSE 272
             + E    I +L   K L     +RAEE    N  K  FLA++SHELRTPLNA+LG+++
Sbjct: 623 EQREESVAFILDLTERKQLEAALHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQ 682

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++        + E     +  I R+ + L  LI ++LD+SRI  G+  L+   + L+ +V
Sbjct: 683 LLRSRKF---DEEKTARALETIDRNTKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVV 739

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
              I  +   AQ K+I+I   +D  +  +  D   ++QVI NLLSNA+KFT  GG V + 
Sbjct: 740 EAAIETVIPAAQAKSIQIIPLLDERIERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIA 799

Query: 393 VGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +              I + D G GI    +P V   F Q       +  G+GLGL I + 
Sbjct: 800 IHRVGSELEGNFCAEIEVTDTGQGINPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRH 859

Query: 448 IMANHGGQFLIRSK-LREGVEVIAILPN 474
           ++  HGG     S+   +G      LP 
Sbjct: 860 LVELHGGTVKADSQGSGKGSAFTVRLPL 887


>gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1211

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 8/283 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                F      +     + +   A+  +   ELE  + L ++   +AE+ N AK+ FL+
Sbjct: 648 GVPVTFIMAFMFIDNITAQKMELDAKIAEQKQELEKQQKLLEQALVQAEKANNAKTMFLS 707

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSH++RTP+NAI+GF+ +       P+     K Y+     S  HLL+LIN+ILD+SRI
Sbjct: 708 NMSHDIRTPMNAIIGFTNLALNNLDDPVL---VKNYLNKTVVSSTHLLSLINDILDMSRI 764

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVIL 373
           E+G+  L E   +L +I+ +   ++  +A EK   ++    +     V  D+  + Q+++
Sbjct: 765 ESGKIRLEEVNCNLSEIMHDLNTIVLGQASEKQQNLYMDTFNIENELVICDKLRLHQMLI 824

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNAVKFT +GG +HV V  T+           +KD+G G++   +  +   F +   
Sbjct: 825 NLLSNAVKFTPVGGNIHVFVRQTASDENTGTYEFHVKDDGIGMSPEFLKVLYQPFERERT 884

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  S  QG GLG+ I + I+   GG   + S   +G E I  L
Sbjct: 885 STISKTQGTGLGMSITKKIVDMMGGSIDVVSAPNQGTEFIVHL 927


>gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 922

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 97/273 (35%), Positives = 142/273 (52%), Gaps = 9/273 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E+ +L+   + A + S++ R RAE+ N  K  FLA++SHELRTPL AILG++ +I+
Sbjct: 498 QLEHERTELLRREQQALAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIK 557

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P   E  K+ +  I R+      ++++IL +SRI  G+  L   A+ L  ++   
Sbjct: 558 DKALAP---ERVKQGMASIERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAA 614

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  +   A+ K IEI  +    LS V  D   ++QV+ NLLSNAVKFT   G V V VG 
Sbjct: 615 VDTITPTAKAKEIEIRVEPGEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGR 674

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           +  +   IS+ DNG GIA   +P V   F QG  +   A  G+GLGL I + ++  HGG 
Sbjct: 675 SDSQ-VAISVTDNGKGIATSFLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGT 733

Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIPEDNHE 487
               S     G      LP    L   P   HE
Sbjct: 734 VEAESPGEGAGSTFTVTLP----LPAAPSAGHE 762


>gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 771

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 118/294 (40%), Positives = 160/294 (54%), Gaps = 12/294 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240
           G      +  T I  H  K     L  +A   DL    +     A  L+D  RK      
Sbjct: 471 GGYVAVGTNITRIKAHEQKLVDNDLRLRATVADLKISQVKLERQAIELADLARKYSEEKN 530

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE N AKS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 531 RAEEANQAKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 590

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR  L    + L   + E + ++  RA  K++E+  +I+  +  
Sbjct: 591 LLEVINDILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGIPI 650

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT  GGRV V    T      + I D+G GIA   +  +
Sbjct: 651 V-ADRRAIKQILINLLSNAVKFTPDGGRVTVR-SRTLEDSIVMMIADSGIGIAPQSLRRL 708

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    +     G GLGL IA+S+   HGG   +RS L  G  V+  LP 
Sbjct: 709 GQPFEQVESQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLPR 762


>gi|239908975|ref|YP_002955717.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798842|dbj|BAH77831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 939

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 12/302 (3%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +S       LA  ++  +S  T    +L     +      EK+    E E  +   +E +
Sbjct: 357 ISGDDEISELARYISLYISQITNYKLNLENLVKERTRRLQEKNV---ENEKIRQKLEEAK 413

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE+ N  K+ FLA ++HE+RTP+NAI G ++ +    +        ++ +  I  S  
Sbjct: 414 VVAEQANKTKTDFLAKVTHEVRTPMNAIKGMNDYLLSTALTA----DQRDCLTAIKESSD 469

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-L 358
           HLL ++N++LDLS+IEAG+  L     +L  ++     ++   A +KN+E+   +D S  
Sbjct: 470 HLLTIVNDLLDLSKIEAGKIVLETIDFNLKSVIESTTRLMLPLANKKNLELVTLLDDSAD 529

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG----RVHVTVGWTSGRGQYISIKDNGPGIAE 414
             V  D   +RQ++LNL +NA+KFT +GG        T     G    I++ D G GI  
Sbjct: 530 VVVRGDPARLRQILLNLTNNALKFTKLGGIAVTASATTDATAGGYEIAITVSDTGVGIER 589

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             + T+   F QG  +      G GLGL + + ++    G   + S   EG      LP 
Sbjct: 590 ARLDTIFEPFTQGDDSTSRKFGGTGLGLSVCKQLVGLMHGAITVESTPGEGSSFTVRLPL 649

Query: 475 TR 476
            +
Sbjct: 650 AQ 651


>gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
 gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
          Length = 984

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + +       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691


>gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 487

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 145/320 (45%), Gaps = 9/320 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            +    ++ +   +++A     + S  +    +               + +       + 
Sbjct: 173 HLQMLIIYTAVGGIILAALLSLVFSRIISRPLVKMNKVALEMASGNYQHRV------DIR 226

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + E   L   L    S   E   + E +   +  F+++++HE++TPL  + GF+E +  
Sbjct: 227 SKDEIGLLSDSLNTLSSRLQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLD 286

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +   + +  + Y+G+I      L  L+NEILDL R+E G ++  +    L  ++   +
Sbjct: 287 GLV--KDEKERETYLGNILDEINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVL 344

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L    ++K + +   ++  L  V  +   M +V++NL+ NAV+ T  GG++ + V   
Sbjct: 345 GKLNQLVEQKGVNLKLNLEKRLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSK 404

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           + +  +I I+D G GI+  ++P +   F +   +    + G GLGL I + I+  HGGQ 
Sbjct: 405 ANQ-VHIRIRDTGVGISPEDLPMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQI 463

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + SKL EG     +LP  +
Sbjct: 464 YVESKLNEGTSFNIVLPVNQ 483


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++ ++ + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 731


>gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
 gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
          Length = 834

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E   L++      +   + R+RA +   AK  FLA++SHE+RTP+N ILG + +++
Sbjct: 423 REKDELGMLVSAFNQLSASLVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQ 482

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E M    +    EY+  I  S + L+ LIN++LD S++E+   +L E+   L  + +  
Sbjct: 483 DEPM----SARQAEYLSVIAHSSRGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYV 538

Query: 336 IIMLQLRAQ-EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
             ++      +  +    + + +    +  D   + QV+LNL+SNA+KFT  G     ++
Sbjct: 539 HDLMLPTINNKPQLAFEFRYEDTCPRYFLGDAHRIEQVMLNLVSNALKFTETGVVSFSIS 598

Query: 393 VGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +    G   G  + + D G GIA  +   +   F Q   +      G GLGL I + ++ 
Sbjct: 599 MRKEQGGYTGVCLRVSDTGVGIAPEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVD 658

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             GG   + S+L  G      LP         +   +ST  K 
Sbjct: 659 LMGGTISVESELGRGSVFNVFLPL--------QIEKDSTDVKG 693


>gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 1122

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 166/426 (38%), Gaps = 16/426 (3%)

Query: 63  GTWFTQNPIFPMWSLI-TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
           G  +       +W    T       L+  + V    ++  +     + L   ++      
Sbjct: 337 GMLWESLRRNTLWLFALTGLTCTLMLAWVRLVDRRIMRPTQTQS--LRLQESEVLGRTII 394

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
               +      +     + ++           ++    P  +         AL+     +
Sbjct: 395 ESTGVGLVILDSTNAAVLMENDV------SDRITAHAKPGELARFHRAACNALADGERGN 448

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                      LA      +Y+T  + +S  +    +    D +     ++S   +    
Sbjct: 449 TVGRHGKFNFELAHTDETVSYLTVRVVESTYQGKPAKLCAMDDVTAARQSESTLLQAIHD 508

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+  N AKS FLA+MSHE+RTPLN +LG  E++E+  +    +   ++ +  + +S Q L
Sbjct: 509 ADAANRAKSAFLATMSHEIRTPLNGMLGSIELLEVSAL----DAAQRDQLEVMQQSAQSL 564

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SS 360
           + +IN++LD S+IEAG+  L      +  +V +        A+ +++++   IDP+L + 
Sbjct: 565 IQIINDVLDFSKIEAGQMALQARPCQIDSLVEDVCRRFAPDAERRSLQLLCVIDPALHAP 624

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIP 418
           +  D     QV+ NL+SNA+KFT  G  V      T G      + + D G GIA  +  
Sbjct: 625 ILLDPLKTEQVLGNLVSNAIKFTEQGKVVVEATTMTEGGRDWLKLRVIDTGIGIAIEDQQ 684

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q   +      G GLGL I   ++    G   + S+   G      +P   V 
Sbjct: 685 RLFAPFVQAEQSDSRRFGGTGLGLSICNRLVGLMNGSIRLVSEPGLGSCFDVRIPMEPVT 744

Query: 479 NFIPED 484
              P D
Sbjct: 745 VTQPAD 750


>gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
 gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
          Length = 961

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 136/249 (54%), Gaps = 6/249 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +      +   K+AE+ +LAK+ FL +MSH++RTP+N ILG+++++E E  G  +     
Sbjct: 552 QKLNEKLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGK-DIPEVL 610

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  + +SG  LL++IN +LD++RIE+GR E+ E+   + D+ +    +   +A++KNI
Sbjct: 611 EHLEKLQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKKNI 670

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYI 403
            +   ++     V  D   ++++++N+LSNA+K+T  GG V V V              I
Sbjct: 671 SLHYTMNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIVRI 730

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G G+++  +  +  +F +     KS   G GLG+ I ++ +   GG   + S+L 
Sbjct: 731 RISDTGIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVESELG 790

Query: 464 EGVEVIAIL 472
           +G      L
Sbjct: 791 KGSTFTVTL 799


>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 623

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 24/381 (6%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               + +            ++    L  ++   A  ++      F   F ++        
Sbjct: 213 LTGFMIIFLLVIVLVRRNVVHPLTHLANSMQAFAQGDYTQRVPQFTGEFGILSREFNNMA 272

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAK 232
             +      L  + +         T  + +        +  +D L          LE   
Sbjct: 273 TQIFEQQEKLLSLNSQLELQIMERTAEIERRKQAEEELKQHRDHLELLVSERTQRLEQQT 332

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                 +K AE  N +KS FLA+MSHELRTP+NAILGFS+++E +          +  + 
Sbjct: 333 IELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFSQLMERDQAITST---QQNNLR 389

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I RSG+HLL+LIN++LD+S+IE+GR  L   +  L   +++   M+ +RA+ KN+    
Sbjct: 390 IIQRSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQTLKDIADMIHIRAKNKNLLFTW 449

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----------GRG 400
           + DP L+  +  D   +RQ+++NLL NA+K+T  GG + + V                  
Sbjct: 450 EYDPKLAHYIKTDVGKLRQILINLLGNAIKYTHEGG-LSLRVHSKEMATTSASEKPYQHR 508

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y+ ++D+G GI   E+  +  +F Q S + K   +G GLGL I +  +   GG   + S
Sbjct: 509 VYVEVEDSGAGIGPEEVDKIFDAFVQVSSS-KGISEGTGLGLSITRRYIQMMGGDIRVMS 567

Query: 461 KLREGVEVIAILPNTRVLNFI 481
           +L +G      +P       I
Sbjct: 568 ELGKGSLFKFDIPVELAEEKI 588


>gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp.
           Marseille]
 gi|151282574|gb|ABR90984.1| two-component hybrid sensor and regulator [Janthinobacterium sp.
           Marseille]
          Length = 599

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 179/450 (39%), Gaps = 14/450 (3%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSL 89
             EI    +  L R  P   L  LL A +      N +      +W  + + V    +++
Sbjct: 11  ADEIFIAQMAILRRNFPFALLGSLLTAGLVVIALWNVLSQRELLLWLGVNVLVLGLRVTV 70

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
            +     D+    +  W   +L      G+ W L           EY        L +  
Sbjct: 71  LRTYQPEDLP--ALRRWSRRMLWSTGLAGIVWGLPYAYWLFQAPFEYQMFMIIGLLTLGT 128

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
                    +P  +     P          +    L   LA      L         +++
Sbjct: 129 GAIYAYCIYMPL-LLAFEVPYFFPPFLALGLDPDTLHHVLALAGMLYLLVTLAFALRMYR 187

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +    L  + E  DL+A L + K  ++ +++ A+  N AKS+FLA+ SH+LR P++A+  
Sbjct: 188 TQRDSLQMRFENRDLLARLAIEKEAAERSKESADRSNQAKSQFLAAASHDLRQPVHALSL 247

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +  V+  +++    N   ++ +  I R+   +  L + +L++SR++AG         SL 
Sbjct: 248 YVGVLREQSL----NAKSRQLVDHIERATAAMGRLFDGLLNISRLDAGVIRPRLRHCSLA 303

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ +  +    RA  K++ +       + +V++D   + +++ NL+ NA++ T  GG  
Sbjct: 304 ALLDQLQLEYAPRAATKSLVLRLHR-GVVPAVYSDPVLLDRILRNLVDNAIRHTQSGG-- 360

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +      G+   + + D G GIA  +   +   F Q     ++  +G+GLGL I +   
Sbjct: 361 VLIACRRRGKFVQVEVWDTGVGIAAADQEKIFMEFHQVGNPERNQSKGLGLGLAIVRRTA 420

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              G + ++RS+   G      LP   V  
Sbjct: 421 DLLGHRLILRSRPGRGSVFKLSLPVHSVAE 450


>gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger]
          Length = 2262

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1752 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1811

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   +    EY+  I      LL LIN
Sbjct: 1812 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1867

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + +D       V  D
Sbjct: 1868 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPELVVLGD 1927

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +  S+ D G GI+E +   + 
Sbjct: 1928 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLF 1987

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L
Sbjct: 1988 RPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTVTFHL 2039


>gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 596

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/465 (23%), Positives = 176/465 (37%), Gaps = 46/465 (9%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
           P   L+    G W       P+W +  +  Y   L     ++N   +   +Y  +   L+
Sbjct: 125 PAVELVYTAQGLWVLTGSNGPLWYVGVVNGYGMVLVGTLLMINQARRSRALYRAQALSLL 184

Query: 113 GQIAIGLCWTLLTLVE----PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
                 L W    L      P  +       +  + L   +++       L  A   +  
Sbjct: 185 VGAL--LPWVTSILFVTGRSPILYIDTTPVAFALSGLTFNVAMRRFRVLDLLPAARDAIV 242

Query: 169 -PVVVALSTQAIMSMHVLDISLAGM------LATALSFFTYITYHLFKSNVKILSCQAEK 221
             +  A+         +     A +                    L++        Q E 
Sbjct: 243 DQISDAIIVVDRHDRVLDLNPAAQLFFADQTAVIGQPLTVVAPTWLYEQVRDRYEGQFEL 302

Query: 222 DDLIAELEVAKSLS-DETRKR----------------AEEENLAK--------------S 250
           +   +E  +   L     R R                 ++  LA               S
Sbjct: 303 NQPTSEGMLTYDLRCTTLRDRRGMAMGRIFVLRDITLLKQAALALQKAKEAAEAANQAKS 362

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHELRTPL AILG+SEVI  +      N+   + +  +  +G+HLLNLIN+IL+
Sbjct: 363 TFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIAD-LDRVVLAGRHLLNLINDILE 421

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           L+R+EA   ++    + L +IV E +      AQ     +   ++P+L  V AD   +RQ
Sbjct: 422 LARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPPVKADPTRLRQ 481

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+LNL+ NA KFT   G++HV           I + D G GI   ++ ++   F Q    
Sbjct: 482 VLLNLIGNACKFTEQ-GQIHVRCYSPQPGIIQIDVSDTGIGIPPEQLASLFQPFMQVDNG 540

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                 G GLGL I++ +    GG+ ++ S+ + G      LP  
Sbjct: 541 TTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLPVA 585


>gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1064

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 155/276 (56%), Gaps = 14/276 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L A++        E +++AE  N+AKS F+A+MSHELRTPLNAILGFS+++   +  
Sbjct: 576 NCTLEAQVTQRTQELAEAKEKAEVANVAKSAFIANMSHELRTPLNAILGFSQIMNRSSNL 635

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P     ++E +  I+RSG++LL LIN ILD+S+IEAG+  L+     L+ ++ E   + +
Sbjct: 636 PN---EHQESVKIINRSGEYLLTLINNILDVSKIEAGKITLNSKNFYLVRLLDEIEELFK 692

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398
           L++  + ++++ + + ++   +  DE  +R+V++NLLSNA+KFT +GG  + V    T  
Sbjct: 693 LKSINQGLQLYFEREDNIPQYIQTDELKLREVLINLLSNAMKFTQVGGIYLRVKTRSTPE 752

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +  Y  ++D G GI   E+  +  +F Q   + K A++G GLGL I+Q  +   G
Sbjct: 753 TEPSTQTLYFEVEDTGVGILSEELSQLFEAFSQT-QSGKQAQEGTGLGLAISQKFVELMG 811

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G+  ++S+   G      +   +V    P +    T
Sbjct: 812 GEINVKSQAGVGTIFSFNI---QVNVVQPTEVETQT 844


>gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
 gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
          Length = 940

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 154/325 (47%), Gaps = 12/325 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLATALSFFTYITYHLFKSNVK 213
            +++  Y +    F   + +    +++  + + ++     A       Y + H  K   +
Sbjct: 307 IDYLHRYFMLALLFTACIVMVLSIVLTKRITVPLAKLARFAAQFKLGNYTSQHTLKGPHE 366

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               Q   +    ++       ++  ++AE  + AKS FLA++SHE+RTP+N +LG S++
Sbjct: 367 FQVLQEALNQGATKIAYDTQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQL 426

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +     +  + ++  +  SG+H+++++N+ILD S+IE G+++L+++   + D+V 
Sbjct: 427 LLKTDL----TQEQRHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVG 482

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                    A+EK +    + +    S  +AD+  +RQ++ N+++NA+KFT   G V V+
Sbjct: 483 TIESTYYSLAKEKGLGFSIQCNFDYNSWFFADKSRIRQILFNVINNAIKFTDK-GEVSVS 541

Query: 393 VGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +          R   I+ +D G GIAE  +  +   F Q  I+      G GLGL I   
Sbjct: 542 LNQDQCDDPRERRLIITTQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQ 601

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++    G   + S   +G      L
Sbjct: 602 LVNLMNGDIQLESTYGKGSTFTITL 626


>gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
 gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
          Length = 2128

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 12/290 (4%)

Query: 186  DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            ++         L     +      S    L  Q  +D +    +         + +AEE 
Sbjct: 1460 NLIAGAFTKDRLDVLNILAGQAAISIDNALVYQNLEDRVNERTKQ----LTLAKLQAEEA 1515

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NA++G S ++    +        K+Y+  I  S + LL LI
Sbjct: 1516 NQAKSMFLATMSHEIRTPMNAVIGLSHLVLKTQLNL----EQKDYLNKILESAEILLGLI 1571

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWAD 364
            N +LD S+IEA +  L     +L D++     +  ++A+EK + +     +  +  +  D
Sbjct: 1572 NSVLDFSKIEAHKLALESIPFNLNDVIENSTSICSIKAKEKGLALNIHCHNADIPLLQGD 1631

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421
               ++Q+++NL +NAVKFT IG   +H+ +             I D G G+ + +I  + 
Sbjct: 1632 PLRLQQILINLANNAVKFTRIGQVDIHIHLEPNEQDLAQLKFEIVDTGVGMNKKQIDNLF 1691

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +SF QG  +I     G GLGL I++ ++   GG+  + S++ +G      
Sbjct: 1692 SSFSQGDDSITRQYGGTGLGLAISKELIELMGGEIWVNSEMGKGSTFGFR 1741


>gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1208

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 10/253 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E R+ A   +  KS FLA+MSHE+RTP+N ILG +E+++   +    N   +++I  +
Sbjct: 546 LVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL----NPQQQDFIKTL 601

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +S  HLL +IN+ILD S++EAG   L    + +ID V     +L ++AQ K +E+   I
Sbjct: 602 SQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLAIQAQTKQVELITTI 661

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409
           DP L  +V  D   +RQ++ NL+ NA+KFT   G V +     +           + D G
Sbjct: 662 DPQLGGTVTGDSMRLRQILTNLVGNAIKFTHR-GSVVIRALPMAEDEASVLVKFEVIDTG 720

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI + +   +  SF Q   +      G GLGL IA+ +++   G   + S   +G    
Sbjct: 721 IGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDIGLESSPGQGSTFW 780

Query: 470 AILPNTRVLNFIP 482
                 R+    P
Sbjct: 781 FTARFQRLETPPP 793


>gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 653

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
             +      +  I+  G     L    +    L ++  + L   A       EL +  + 
Sbjct: 103 GLKIRFYAGMPLITPDGHAVGVLCAADHEPRSLNENQKRALHIVARHVITTLELGIKNNE 162

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               +K AE   LAK  FLA+MSHE+RTPLNAI+GF+E++     G   ++  + +I D+
Sbjct: 163 LLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLS----GTPLDKQQQAFIQDV 218

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G++LL ++N+ILDLS+IE+G   L +   +L   +R    +L+++     +E    +
Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVK-TADGVEFNLFL 277

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409
           D  L  V   D+  + Q+++NL  NA+KFT   G V ++V              S+KD G
Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNE-GEVTISVKNKGETEDSYTIRFSVKDTG 336

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +  + ++   F QG         G GLGL I + ++  H  +  ++S+   G E  
Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396

Query: 470 AI 471
             
Sbjct: 397 FT 398


>gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 635

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 256 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 311

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +V E   + +L+
Sbjct: 312 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 371

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +++          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 372 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 428

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 429 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 484

Query: 463 REGVEVIAILPNTRVLNFI 481
            +G   I  LPN +V   +
Sbjct: 485 GQGSTFILYLPNRQVQEVV 503


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 8/271 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +S V ++S    +  +   + V + +++E R      +  +  F+A++SHELRTP++ + 
Sbjct: 330 RSWVLLMSPLYAQSHVRGAVAVLRDMTEERR-----LDKLREDFIANVSHELRTPISMLQ 384

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I  +     ++   KE    I+     +  L+N++LDL+R+E+G   L    ++L
Sbjct: 385 GYSEAIVDDIASSEDD--RKEIAQIIYDESLRMGRLVNDLLDLARMESGHTALHYVKVNL 442

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            + + +        A+EKNI +   I  + +    DE  M QV  NL+ NA++ T  GG 
Sbjct: 443 DEFLEKIFRKFSGVAKEKNISLTDDISLNETEFAFDEDKMEQVFTNLIDNALRHTQSGGT 502

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           VH+ V         I +KD+G GI E ++P +   F +   A      G GLGL I ++I
Sbjct: 503 VHIAVQSVKDG-LKIDVKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNI 561

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  H G   + S++ +G      +P   +  
Sbjct: 562 VEAHNGSITVHSRIDKGTTFTFYIPTKPLDE 592


>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 681

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 2/253 (0%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + L  ++++      E  K  +E +  KS FLA+MSHELRTPL+AI+  SE+++ E  G
Sbjct: 416 NESLEEKVKLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFG 475

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            LN++  K +I +I  SG HLL+LIN +LD+S+IEAG+ +L+    S+ DI  E   +L+
Sbjct: 476 ELNSKQLK-HITNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLK 534

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A  KNIEI   I+PS   +  D   ++Q++ NL+SN++KFT  GG++ + +       
Sbjct: 535 SLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYM 594

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           + I I+DNG GI + +   +   F Q   + +   +G GLGLP+ + ++  HGG+  + S
Sbjct: 595 KLI-IEDNGIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLIS 653

Query: 461 KLREGVEVIAILP 473
            +  G ++I  +P
Sbjct: 654 NIGTGTKIIITIP 666


>gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 827

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 5/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E + ++      +  AE  N AKS FLA+MSHELRTP+ AILGF +++        +N
Sbjct: 417 VTEWKQSERELKLAKIAAEAANHAKSEFLANMSHELRTPMTAILGFVDIVAENV---SSN 473

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +    I R+G+HL+ L+N+ILDLS+IEAGR E+ + + ++  +  + I ++++R+ 
Sbjct: 474 PQLIDAAATIKRNGEHLMGLLNDILDLSKIEAGRLEVQKHSCNVRALTADVIQLMRVRSD 533

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            K +E+  +   ++   +  D   +RQ+++NL+ NA+KFT  G  ++ V +         
Sbjct: 534 AKGLELSIEFQGAIPETIETDSTRLRQILINLIGNAIKFTENGRVQILVRLERRGTPMLE 593

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I+D G GI   ++  +   F Q   ++     G GLGL I++ +    GG   + SK 
Sbjct: 594 FEIRDTGIGITPEQMTKLFRPFTQVDTSLTRKFGGTGLGLTISKRLAEILGGTITVSSKA 653

Query: 463 REGVEVIAIL 472
            EG   +  +
Sbjct: 654 GEGSSFLLRI 663


>gi|229126416|ref|ZP_04255431.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
 gi|228656996|gb|EEL12819.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
          Length = 883

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|323692858|ref|ZP_08107084.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503087|gb|EGB18923.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 939

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G     +     +        VK++      ++   + E  +       + A++ N AKS
Sbjct: 496 GGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKQANEAKS 555

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSH++RTPLNAI G S +   +     + E  ++ +  I  S  HL+ LIN++LD
Sbjct: 556 NFLAQMSHDIRTPLNAITGMSSIALSQ---AEDPEKVRDCLKKITLSSHHLIELINDVLD 612

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S+IE G+ EL+E+  SL +++ +   +L  +A  K  E+      S    +  D   +R
Sbjct: 613 MSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNPKSPHDHLCGDAGRIR 672

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSF 424
           QV++NL++NA+K+T  GGR+ + V   S           ++ D G G+++  +  +   F
Sbjct: 673 QVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTGIGMSKDFLDYIFVPF 732

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   A     QG GLG+PIA  I+    G   + S+  +G      L
Sbjct: 733 SRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFTVTL 780


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           F   T  + +            +  I +   A+++    R+ AE+ N AKS FLA+MSHE
Sbjct: 722 FIQSTGTVEQDENGKALLMMGINRDITQQREAENILKTAREAAEKANKAKSAFLANMSHE 781

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTP+NAILG   ++    +    +    +Y      + + LL L+N+ILD S+IE+G+ 
Sbjct: 782 LRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFSKIESGKM 837

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           EL      +  ++R+  ++L    + K +E+   IDPSL   V  D   ++Q++ NL  N
Sbjct: 838 ELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897

Query: 379 AVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A+KFT +G  V  + V          +  ++D G GIA     ++ + F Q   +     
Sbjct: 898 ALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRF 957

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPN 474
            G GLGL I+Q  +A  GG   + S+L +G        LP 
Sbjct: 958 GGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITLPL 998


>gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1156

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 18/263 (6%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A      KS+FLA+MSHE+RTP+N +LG   ++    +    N     Y   
Sbjct: 407 ELVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDL----NPQQLNYTRT 462

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I    +HLL +IN+ILD+S++EAG+  L +   SL   +   I +L ++A+ K +E+   
Sbjct: 463 IESCAKHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAIL 522

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQY 402
           ++ ++   + +D   +RQ++LNL+ NA+KFT   G V V V  +  +             
Sbjct: 523 VESNVPRQLQSDPGRLRQILLNLVGNAIKFTDA-GEVVVRVAVSRHQPTDTLSQSSVTLR 581

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI+  +   +  +F Q   +      G GLGL I Q ++   GG+  + SK+
Sbjct: 582 FSVTDTGIGISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKV 641

Query: 463 REGVEVIAILPNTRVLNFIPEDN 485
            +G      +P       +P   
Sbjct: 642 GQGSTFWFTVPVK--TQPLPPAQ 662


>gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 1068

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 4/236 (1%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE  N AKS FLA+MSHE+RTP+NAILGF++++  +      +    ++I  I  SG
Sbjct: 303 KEEAEAANRAKSDFLANMSHEIRTPMNAILGFADILRRDKKKLQTD--QLKHINTISTSG 360

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           QHLL+LIN+ILDLS++E+GR E+       + ++   +  ++++A EK +E+    D SL
Sbjct: 361 QHLLDLINDILDLSKVESGRLEVEALDCKPVQLIHHVLQFMKVKADEKGLELKFVADTSL 420

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
              +  D   +RQ++ NL+ NA+KFT  GG  VHV+V   + +   I++ D G G+ + +
Sbjct: 421 PEQIETDPGRVRQILTNLIGNAIKFTEQGGVTVHVSVVGDNPKQMKIAVVDTGIGMTQQQ 480

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +V  +F Q   +I     G GLGL I+Q      GG  L+ S+   G     +L
Sbjct: 481 TDSVFEAFVQADSSITRRFGGTGLGLSISQKFAHALGGDILVTSEKGVGTTFTLVL 536


>gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
 gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens]
 gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 162/370 (43%), Gaps = 16/370 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV----FLSFFPVVVAL 174
           L W  L L   G     Y +++ S  L+ A         +                V  L
Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASLLLIAAGLAGTALLAVRMGRTINNPLTQIKQAVAQL 208

Query: 175 STQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
               + +      S     + +      + +     +    I     +    +  +E+  
Sbjct: 209 KDGNLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQN 268

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+G
Sbjct: 269 IELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLG 324

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351
            I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+  
Sbjct: 325 TIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVS 384

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408
                +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI+D 
Sbjct: 385 LVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDT 444

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E 
Sbjct: 445 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 504

Query: 469 IAI--LPNTR 476
                LP TR
Sbjct: 505 WISLNLPKTR 514


>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 681

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 91/253 (35%), Positives = 150/253 (59%), Gaps = 2/253 (0%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + L  ++++      E  K  +E +  KS FLA+MSHELRTPL+AI+  SE+++ E  G
Sbjct: 416 NESLEEKVKLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFG 475

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            LN++  K ++ +I  SG HLL+LIN +LD+S+IEAG+ +L+    S+ DI  E   +L+
Sbjct: 476 ELNSKQLK-HVTNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLK 534

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A  KNIEI   I+PS   +  D   ++Q++ NL+SN++KFT  GG++ + +       
Sbjct: 535 SLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYM 594

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           + I I+DNG GI + +   +   F Q   + +   +G GLGLP+ + ++  HGG+  + S
Sbjct: 595 KLI-IEDNGIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLIS 653

Query: 461 KLREGVEVIAILP 473
            +  G ++I  +P
Sbjct: 654 NIGTGTKIIITIP 666


>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
           and HAMP domains [Synechococcus sp. PCC 7002]
          Length = 1280

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+      ++ AE+ N AKS FLA+MSHE+RTP+NA++G +E++    +        +E
Sbjct: 712 EAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAVIGMAELLRDTDLTA----QQQE 767

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +I  I  SG +LL +IN+ILD S+IE+G++EL     +L   +  C+ ++  RA  K I 
Sbjct: 768 FIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQTCLENCLDLMSTRAIAKPIY 827

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY-- 402
           +   +DP +   +  D    +Q++LNLL NAVKFT   G V + V      T    Q   
Sbjct: 828 LSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNR-GDVSLWVQKVPTATGDGDQVCL 886

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +I D G GI   ++  +   F QG  +      G GLGL I++ ++   GG+  + S
Sbjct: 887 RFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGGKLWVES 945


>gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 583

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 135/267 (50%), Gaps = 5/267 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +    ++ + E  DL   L       +E  +R E+ +  +  F+A++SHELRTPL  + G
Sbjct: 320 TTRIRVTSRDEVGDLGQSLNALAQDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHG 379

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +++ ++  T+   +    K+Y   +      L  LI ++LDLS+++A    L    +SL 
Sbjct: 380 YNQALQDGTIT--DPALVKKYHRVMGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLA 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +IV   + +L+ R++EK + +   + P +  +  D   + Q+ L L+ NA+KFT  GGR+
Sbjct: 438 EIVDNVVTLLKPRSEEKGVSLAACVAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +       + +++ D G GIA  ++P +   F +G  +   A  G GLGL IA+ I+
Sbjct: 498 SIDLT-VQDGEEVLTVADTGTGIAPEDLPYIWERFYKGDKS--RASSGTGLGLAIARQII 554

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476
             HG +  + S+  EG       P  +
Sbjct: 555 ELHGAKVDVTSRCGEGTVFTIRFPLEK 581


>gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 637

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +V E   + +L+
Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +++          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 374 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486

Query: 463 REGVEVIAILPNTRVLNFI 481
            +G   I  LPN +V   +
Sbjct: 487 GQGSTFILYLPNRQVQEVV 505


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 9/249 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I++ + A+      ++ AEE   AKS FLA+MSHE+RTP+NAI+G S +     +    +
Sbjct: 947  ISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTEL----D 1002

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + YI  +HRS + LL +IN+ILD S+IEAG+ ++   A  L D++     ++ L+A+
Sbjct: 1003 ARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVGLKAE 1062

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            EK +E+   + P + + +  D   + Q+++NL +NAVKFT  GG + ++V        + 
Sbjct: 1063 EKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRVMDQGADWV 1122

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S+ D G G++  +   +   F Q  ++      G GLGL I+  +    GG+  + 
Sbjct: 1123 RLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEIRVE 1182

Query: 460  SKLREGVEV 468
            S    G   
Sbjct: 1183 SAPGAGSTF 1191


>gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
 gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
          Length = 984

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691


>gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 564

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 10/268 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE +  +  LE       +  ++A+  N AKS FLA +SHE+RTP+N ++G SE++    
Sbjct: 13  AELEAEVQRLERENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDTD 72

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      K +   I  S   LL LIN +LD S+IEA +  L      L  ++ + + +
Sbjct: 73  LQP----RQKHFAHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSL 128

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++  + K + +  +IDPSLS     D   +RQV++NLL NAVKFT   G + + V    
Sbjct: 129 YRVTGKSKGLRVNAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQ-GAILLRVRKER 187

Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      ++D+G GIAEG +  +   F Q   +      G GLGL I   ++    
Sbjct: 188 AGETAELLRFEVEDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLME 247

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G+F  RS+  +G      LP        
Sbjct: 248 GEFGARSEYGKGSTFWFSLPLRVARQAA 275


>gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 456

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
              +    +S F+A++SHELRTPL +I GF E +    +   N E  ++++  I    + 
Sbjct: 220 EMRKLEKMRSEFVANVSHELRTPLTSIRGFIETLRSGAI--ENPEAREKFLDIIDFEAER 277

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LIN+IL LS IE  +       I +   + + + +++  A++K+I + + ++    +
Sbjct: 278 LTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLT 337

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + A+     Q+++NL+ N +K+T  GG V V+     G    I ++DNG GI + +IP +
Sbjct: 338 IIANRDRFHQMMINLIDNGIKYTQEGGFVKVST-RLEGEKIIIEVEDNGIGIPKDKIPRL 396

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   +      G GLGL I + I+ +  G+  + S++ +G +     
Sbjct: 397 FERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRF 448


>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1205

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A LE +       R  A+  N AKS FLA+MSHE+RTP+NAI+G S +     +      
Sbjct: 458 AALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + YI  +  S   LL LIN+ILD S+IEAG+ ++      L +++     ++ L+A E
Sbjct: 514 AQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLENVLDNISNLVGLKASE 573

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-- 401
           + +E+       + + ++ D   + Q++ NL +NAVKFT  G  ++ +T           
Sbjct: 574 QGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVKITITADNLENDDVTL 633

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G G+   +   +   F Q   +      G GLGL I++ +    GG   +RS+
Sbjct: 634 RFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEVRSQ 693

Query: 462 LREGVEVIAIL--PNTRVLNFIP 482
             EG      +    ++VL   P
Sbjct: 694 FGEGSTFEFTINMKRSQVLETKP 716


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +    E    I   +  ++   + +  AE  N AKS+FL++MSHE+RTP++ +LG +E+
Sbjct: 229 AVDLVTELRHEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTEL 288

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +              EY+ DI  S  +LL++IN+ILDLS+IEAG+ EL  +  SL   +R
Sbjct: 289 L----GFTELTPEQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIR 344

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               M   R  EK+++I  KI P +  V   D+  ++Q++LNLLSNAVKFT   G++ + 
Sbjct: 345 TTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFT-AHGQISIQ 403

Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                 R       IS+ D G GIA   +  +   F Q   +      G GLGL I + +
Sbjct: 404 ASLLESRNEHLLVQISVSDTGVGIAAEALDRIFDPFTQADASTSRKFGGTGLGLAICRQL 463

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
               GG   + S+  +G      LP  R      E    S+ ++
Sbjct: 464 AELMGGGIRVESEEGKGSRFHLRLPFKRPG----EPEKRSSDHQ 503


>gi|167647510|ref|YP_001685173.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349940|gb|ABZ72675.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1942

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 99/411 (24%), Positives = 168/411 (40%), Gaps = 27/411 (6%)

Query: 109  WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
             +++  +  G    ++ L   G +              I + +S ++  M    +     
Sbjct: 1101 IIVLPALFEGELKAVIELATFGKFNETQQAFLDQLMESIGIVLSTIAANMRTEGLLEQSQ 1160

Query: 169  PVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             +   L      +   +      A  L  +          L ++N ++            
Sbjct: 1161 LLTSELQAQQGELKKTNDRLELQAASLRQSEELLRSKQDELQQTNAELEDKAMLLSAQNK 1220

Query: 227  ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            ++E   +  ++ +   EE        +  KS FLA+MSHELRTPLN++L  S+++     
Sbjct: 1221 QVEAKNTEVEQAKAALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKMLSENAQ 1280

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+++   E+  +IH +G  LL LIN+ILDLS+IE+G   L    ++   +  +     
Sbjct: 1281 GNLSDKQV-EFSKNIHSAGTDLLGLINDILDLSKIESGTVTLDIGEMAFTSLRDQTQRTF 1339

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               AQ+K I+    IDP+L   ++ D+K ++QVI NLLSNA KFT + G V ++V     
Sbjct: 1340 AQLAQDKKIDFQIDIDPALPRSMYTDDKRLQQVIKNLLSNAFKFTQV-GSVRLSVSRAES 1398

Query: 399  RGQ-------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                              S++D G GI E +   +  +F Q          G GLGL I+
Sbjct: 1399 GWASGNDHLNKAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSIS 1458

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHESTQYKCY 494
            + I    GG+  + S    G      LP   +     +P     S     +
Sbjct: 1459 REITRLLGGELKVVSIPGSGSTFTLYLPLNFSPAAQPLPAPRQPSAPSSTF 1509


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 107/473 (22%), Positives = 190/473 (40%), Gaps = 32/473 (6%)

Query: 40   LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
            L   S   +S + PL                  P+  L +   Y     +  +    +  
Sbjct: 1552 LDAVSRLIMSELTPLVSAHHGAFFLVDGAEAGTPLLKLTSTYAYRERKHIANRFRFGEGL 1611

Query: 100  IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
            +G+  + R  +L+ Q+          L E        L +     +   + +++   F  
Sbjct: 1612 VGQCALERKTILLTQVPEDYITISSGLGEAAPLNIIVLPVLFEGEVKAVIELASFHAFSA 1671

Query: 160  PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVK 213
             + +FL      + +    I++    +  L                 T     L +SN++
Sbjct: 1672 IHQIFLDQLTETIGVVLNMIIANMRTEQLLLQSQDLTQELQSQSKELTQQQEALKRSNIE 1731

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETR----KRAEEE---NLAKSRFLASMSHELRTPLNA 266
            +       ++    +E   +  +  R    ++AE+    +  KS FLA+MSHELRTPLN+
Sbjct: 1732 LEEKATLLEEQNRRVEEKNNEVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNS 1791

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +L  ++++     G L+ +   EY   I+ SG  LL+LINEILDLS++EAG+ ++    I
Sbjct: 1792 LLILAKLLSDNKDGNLSTKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDI 1850

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
             L ++ +         A++K +    ++ P     +  D + ++QV+ NLLSNA KFT  
Sbjct: 1851 VLTELNQFIERSFLPVAEQKGLSFTVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDE 1910

Query: 386  GGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             G V + V        +              ++ D G GIA  +   +  +F Q   +  
Sbjct: 1911 -GSVQLKVKLAEVGTHFDHEVLRRSRYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTA 1969

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
                G GLGL I++ I    GG+  + S+   G      LP   +    PE+ 
Sbjct: 1970 RKYGGTGLGLSISREIAKLLGGEIQVTSEPGRGSTFTLYLPPEYI---SPEEE 2019


>gi|323483856|ref|ZP_08089233.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402810|gb|EGA95131.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 939

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G     +     +        VK++      ++   + E  +       + A++ N AKS
Sbjct: 496 GGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKQANEAKS 555

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSH++RTPLNAI G S +   +     + E  ++ +  I  S  HL+ LIN++LD
Sbjct: 556 NFLAQMSHDIRTPLNAITGMSSIALSQ---AEDPEKVRDCLKKITLSSHHLIELINDVLD 612

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S+IE G+ EL+E+  SL +++ +   +L  +A  K  E+      S    +  D   +R
Sbjct: 613 MSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNPKSPHDHLCGDAGRIR 672

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSF 424
           QV++NL++NA+K+T  GGR+ + V   S           ++ D G G+++  +  +   F
Sbjct: 673 QVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTGIGMSKDFLDYIFVPF 732

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   A     QG GLG+PIA  I+    G   + S+  +G      L
Sbjct: 733 SRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFTVTL 780


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 151/337 (44%), Gaps = 10/337 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +++     +++L  A++     ++V      ++   +     A     A          +
Sbjct: 165 SVANMVGESYILQTALWGLGLVILVTAGVGLLLFRRLTQRLRAMQDVVADFEAGAFGRRV 224

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             ++        E   L            ET +   + +  +   +A++SH+LR+P+ +I
Sbjct: 225 DVTSND------EIGRLGTCFNRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASI 278

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E + ++  G L  E  + Y+    R+ + L  L+NE+ +LS++E  + E +  A  
Sbjct: 279 QGYLETVSMKD-GDLPPEERQRYVTTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFP 337

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           + ++V++ ++  + RA+E+ +++   +    + V AD   + + + NL+ NA+ +T  GG
Sbjct: 338 IAELVQDVVMQYEPRAEEQAVDLRPDLPERHARVEADIGLVERALSNLIDNAIHYTPEGG 397

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V V +         +++ D GPGI E ++P +   F +   +      G GLGL IA++
Sbjct: 398 QVRVRLD-NKQGEVCVAVADTGPGIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKT 456

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           I+  HG    + S + EG      LP        PE 
Sbjct: 457 ILELHGRTLEVESTVGEGTVFRFRLPVE--APSGPEA 491


>gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 931

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 130/252 (51%), Gaps = 8/252 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +    +LE+     D+ R+ AE    +KS FLA MSHE+RTP+N +LG   ++E   +  
Sbjct: 381 EKYAHQLEMNNLALDDARETAEAAAQSKSEFLACMSHEIRTPMNGVLGMLTLLERTAL-- 438

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +++ + ++     S ++LL LIN+ILD S+IE+G++ +     SL +++ E I  L +
Sbjct: 439 --DQSQRNHLDTAQGSARNLLGLINDILDFSKIESGKFPIESVNFSLTNLLNETIRPLAI 496

Query: 342 RAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
           RAQEK IE+   I D +  S   D   + QV+ NL+ NA+KFT   G + V V       
Sbjct: 497 RAQEKGIELVSDITDITSQSFKGDPTRISQVLTNLIGNAIKFTEK-GSITVYVKQNDDIE 555

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G G+A  ++  +   F Q   +      G GLGL IA+ +    GG   +
Sbjct: 556 PRLNFSVEDTGIGLASNQLEKLFQPFTQADSSTTRHFGGTGLGLSIAKRLTELMGGSISV 615

Query: 459 RSKLREGVEVIA 470
            S   +G +   
Sbjct: 616 VSTEGKGSKFSF 627


>gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 768

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + R RAEE +  KS FLA+MSHE+RTPLNAI+GFSE++  +    ++ 
Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I ++   LL LIN+ILDLSRI++G+   + +   L +++       QL   
Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLMP 637

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +  + +  ++    + + AD   + QVI NL++NA KFT   G + +   +T  +    I
Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   +   V   F +         QG GLGL I Q I+ + GG   + SK  
Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751

Query: 464 EGVEVIAILP 473
           EG   I  LP
Sbjct: 752 EGSTFIVTLP 761


>gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 138/277 (49%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L   +      R  AEE N AKS+FLA+MSHE+RTP+N I+G  E+  +      
Sbjct: 537 REITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELALMGCKDAR 596

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    +EY+G    S  +LL+++N+ILDLS+IEAGR EL +S     +++     +   +
Sbjct: 597 S----REYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESLFAIQGSQ 652

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG 400
           A++K +     +DP++   +  DE  +RQ++ NL+ NAVK+T  G   V VT        
Sbjct: 653 AEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTAEVLKQDQ 712

Query: 401 ------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          SI+D G GIA  ++P +   F +G  A  +   G GLGL I + +
Sbjct: 713 EQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTRG--AQDAEFGGTGLGLTITKQL 770

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +    G+  +RS L +G      L    +L   P++ 
Sbjct: 771 VELMNGRIDVRSTLGQGSTFTVSL----LLQTAPKEA 803


>gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 765

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 129/256 (50%), Gaps = 9/256 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + E  ++   E  + A+  N AKS+FL +MSH++RTP+NAI+G + +    T+      
Sbjct: 226 EQEETMQNALREALESAQNANAAKSQFLFNMSHDIRTPMNAIIGMTTLA---TLHLHEPS 282

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +G I  S +HLL LIN++LD+S+IE+G+  L+     L ++V     +LQ +A  
Sbjct: 283 RIRDCLGKISASSRHLLGLINDVLDMSKIESGKIALNNEEFDLPELVAGLFTILQQQASS 342

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399
           + +++   +       V  D   + Q++LNL+ NA+KFT  GGR+ + +           
Sbjct: 343 RRLDLDISVSGIDHEKVIGDTLRVNQILLNLMGNALKFTPAGGRIRLAITELPPQYPGYG 402

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G G+    +  +   F +   A  S  +G GLG+ I ++I+    GQ  ++
Sbjct: 403 TYRFVVSDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNGQIDVQ 462

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G      LP  
Sbjct: 463 SEPGKGTTFTVTLPLK 478


>gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126]
          Length = 773

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +    +    A+  N AKS FLA+MSHE+RTP+NAI+G + +    T    +N
Sbjct: 247 ISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALEST----DN 302

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  + RS   LL+L+N ILD S++EA + E+ +   +L   + +   + Q++AQ
Sbjct: 303 EQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQ 362

Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +++       +      D + + QV+LNLLSNA+KFTA  G + +TV     +    
Sbjct: 363 QKQLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTAS-GHIILTVEKRENQLA-F 420

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E     +  +F Q   +I     G GLGL I + ++   GG   + S++ 
Sbjct: 421 SVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVD 480

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 481 KGSCFSFALPV 491


>gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 917

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 637

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 15/255 (5%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I          E  +EY+ 
Sbjct: 268 QELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTEGEEEKREYLE 323

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+ +  N+E+  
Sbjct: 324 IIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKS-NVELKV 382

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                      D   + QV+ N LSNA+K T   G + + +    G    + + D G GI
Sbjct: 383 IRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLKLYVSDTGCGI 440

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L +G      L
Sbjct: 441 SKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYL 496

Query: 473 PNTRVLNFIPEDNHE 487
           P       IP++  E
Sbjct: 497 P----YQEIPKEVVE 507


>gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
 gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
          Length = 896

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of
           antifungal antibiotics [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 169/370 (45%), Gaps = 16/370 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALS-- 175
           L W  L L   G     Y  ++ S  L+ A L+++AL    +   +      +  A++  
Sbjct: 149 LGWVELDLSHSGMLLRGYRNLFASLLLIPAGLAVTALLAVRMGRTINNPLTQIKQAVAQL 208

Query: 176 ---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                      +    L  + +      + +     +    I     +    +  +E+  
Sbjct: 209 KDGNLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQN 268

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+G
Sbjct: 269 IELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLG 324

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351
            I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+  
Sbjct: 325 TIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVS 384

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408
                +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI+D 
Sbjct: 385 LVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDT 444

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E 
Sbjct: 445 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 504

Query: 469 IAI--LPNTR 476
                LP TR
Sbjct: 505 WISLNLPKTR 514


>gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 585

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           Y L  + +++    A++              +  R++AEE +  KS FLA++SHE+RTPL
Sbjct: 288 YPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPL 347

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF ++I        + E   +++ + H+   HLLN+IN+ILD+++IEAG+ EL  +
Sbjct: 348 NGMIGFLKLILEGM--ADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKMELVCA 405

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382
            I L ++  +    ++ +A+ KN+    ++ P      V  + + + QV+LN++ NA+KF
Sbjct: 406 PIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKF 465

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG + V+                    + I D G G++  +   +   F Q   +  
Sbjct: 466 THEGG-ITVSADVVLKKGKLQEQHFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRT 524

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN--TRVLNFIPEDNHE 487
               G GLGL I+Q ++   GG+    S     G  V   +P     V+    + + E
Sbjct: 525 RQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLYQQPVMLSSNDADAE 582


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+D     LE  + L++E    A+E +  KS+FLA+MSHE+RTP+  ++G +E++    +
Sbjct: 701 ERDIEAQALEKRQLLANEA--AAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVEL 758

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +   +E   +I RS   LL +IN+ILD S+IE+GR ++ E   SL  +++E   ML
Sbjct: 759 ----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKML 814

Query: 340 QLRAQEKNIEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              A+ K++    +I   +     V  D   +RQ+I NL +N++KFT   G V + V   
Sbjct: 815 SFTAERKSLAFNYEICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHE-GHVKLHVSVE 873

Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                 I +K    D G GI E  +  +   F QG  +      G GLGL I+++++   
Sbjct: 874 QETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELM 933

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            G+  + SK  EG      +P  +     
Sbjct: 934 KGRMALASKKDEGTTATFWIPFKKPQKAQ 962


>gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 899

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 9/255 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             ++  + A+  N AK+ FL+SMSH++RTP+NAI+G + + +     P   E  ++ +  
Sbjct: 373 ALEDAYQTAKVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLAEP---ERVRDCLNK 429

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+ S +HLL+LINE+LD+S+IE+G+ +L    ++L ++++    M +    EK ++    
Sbjct: 430 INVSSRHLLSLINEVLDMSKIESGKIDLLPEEVNLPELIQNVSDMCKPLIAEKQLDFKIS 489

Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKD 407
           +       V  D   M+QV++NLLSNA+K+T  GG V + +                + D
Sbjct: 490 VSYVRHEKVITDGDRMQQVLMNLLSNAIKYTPDGGTVSLRIKEIPSITDKKGQFEFIVTD 549

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G G+ E  IP +   F +   +  S  QG GLG+ I ++I+    G   + S++ +G  
Sbjct: 550 DGIGMPEDFIPLIFDPFSRAEDSRISKIQGTGLGMAITENIVRMMNGSIEVTSQMEKGST 609

Query: 468 VIAILPNTRVLNFIP 482
               L    V   IP
Sbjct: 610 FTVTLQFELVDEDIP 624


>gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 917

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  ++  +  +  AE  + AKSRFLASMSHELRTPLNAI+G+SE++  E      N
Sbjct: 398 ITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSEMLIEEAHDHGEN 457

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  I  +G+HLL LIN+ILDLS+IEA + E+   +  +  ++ +    +     
Sbjct: 458 ELVPD-LEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLGDVSATVAPLMA 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401
           +      Q+ D  L  + +D+  +RQ + NLLSNA KFT  GGRV ++        G   
Sbjct: 517 KNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFT-TGGRVTLSARREGRADGDWL 575

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G+   ++  +  +F Q   +      G GLGL I +S     GG   + S+
Sbjct: 576 VFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSRMIGGIVNVESE 635

Query: 462 LREGVEVIAILPN--TRVLNFIPEDNH 486
             +G      +P    R     P    
Sbjct: 636 AGKGSVFTMEVPALCRREAEVPPAAEP 662


>gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group]
          Length = 653

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
             +      +  I+  G     L    +    L ++  + L   A       EL +  + 
Sbjct: 103 GLKIRFYAGMPLITPDGHAVGVLCAADHEPRSLNENQKRALHIVARHVITTLELGIKNNE 162

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               +K AE   LAK  FLA+MSHE+RTPLNAI+GF+E++     G   ++  + +I D+
Sbjct: 163 LLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLS----GTPLDKQQQAFIQDV 218

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G++LL ++N+ILDLS+IE+G   L +   +L   +R    +L+++     +E    +
Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVK-TADGVEFNLYL 277

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409
           D  L  V   D+  + Q+++NL  NA+KFT   G V ++V              S+KD G
Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNE-GEVTISVKNKGETEDSYTIRFSVKDTG 336

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +  + ++   F QG         G GLGL I + ++  H  +  ++S+   G E  
Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396

Query: 470 AI 471
             
Sbjct: 397 FT 398


>gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS
            513.88]
          Length = 2354

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ + +        +  +N  ++  Q        E E  AK    E +      E+  
Sbjct: 1844 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1903

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++    G   +    EY+  I      LL LIN
Sbjct: 1904 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1959

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   +++ + + E +  L+   +++ +E  + +D       V  D
Sbjct: 1960 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPELVVLGD 2019

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V   V         +  S+ D G GI+E +   + 
Sbjct: 2020 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLF 2079

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
              F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L
Sbjct: 2080 RPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTVTFHL 2131


>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
 gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
          Length = 1522

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 200  FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            F   T  + +            +  I +   A+++    R+ AEE N AKS FLA+MSHE
Sbjct: 722  FIQSTGTVERDENGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAFLANMSHE 781

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTP+NAILG   ++    +    +    +Y      + + LL L+N+ILD S+IE+G+ 
Sbjct: 782  LRTPMNAILGMLTLLRRTGL----DRKQADYAAKSETATRTLLRLLNDILDFSKIESGKM 837

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
             L      +  ++R+  ++L    +   +E+   IDPSL   V  D   ++Q++ NL  N
Sbjct: 838  ALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897

Query: 379  AVKFTAIGGRVH-VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            A+KFT  G  V  + V   S     +   ++D G GIA     T+ + F Q   +     
Sbjct: 898  ALKFTEQGEVVLFIKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAEASTTRRF 957

Query: 436  QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             G GLGL I+Q  +A  GG+  + S+L +G      +     +  +P D +
Sbjct: 958  GGTGLGLVISQRFVALMGGELTLESQLGKGSLFHFTI-----MLSLPSDTN 1003


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++ ++ + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 718


>gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 637

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +V E   + +L+
Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +++          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 374 MKK-GVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486

Query: 463 REGVEVIAILPNTRVLNFI 481
            +G   I  LPN +V   +
Sbjct: 487 GQGSTFILYLPNRQVQEVV 505


>gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 867

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 11/257 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D  + EL+V +      + +AE  ++AKS FLA+MSHE+RTPLN ILG  +++E  T+  
Sbjct: 465 DVDLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPLNGILGMLQLLETTTI-- 522

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  KEY+    +S + L  L+++ILDLS+IE+ R  + +    + ++VR       +
Sbjct: 523 --SDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSVSEAFSI 580

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
             +E  +     +D ++   +  DE  MRQ++ N++ NA+KFT   G++ V +   S   
Sbjct: 581 SIKENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPT-GKIEVELSLLSHHT 639

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  +S+ D G GI    +  +L  F Q   +   ++QG GLGL I + ++A  GG 
Sbjct: 640 NKSCRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLVALLGGN 699

Query: 456 FLIRSKLREGVEVIAIL 472
             I S+L  G     + 
Sbjct: 700 ICIDSELGAGTTFYVVF 716


>gi|30261120|ref|NP_843497.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47526275|ref|YP_017624.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183954|ref|YP_027206.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|65318399|ref|ZP_00391358.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871661|ref|ZP_02216306.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167635457|ref|ZP_02393770.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|167638936|ref|ZP_02397210.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|170687610|ref|ZP_02878826.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|177653531|ref|ZP_02935705.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190566627|ref|ZP_03019544.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816148|ref|YP_002816157.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229600347|ref|YP_002865551.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
 gi|254682823|ref|ZP_05146684.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725609|ref|ZP_05187391.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A1055]
 gi|254734235|ref|ZP_05191948.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740116|ref|ZP_05197808.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Kruger B]
 gi|254753457|ref|ZP_05205493.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Vollum]
 gi|254758554|ref|ZP_05210581.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Australia 94]
 gi|30254734|gb|AAP24983.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47501423|gb|AAT30099.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177881|gb|AAT53257.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|164712562|gb|EDR18094.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167513066|gb|EDR88438.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|167529075|gb|EDR91829.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|170668423|gb|EDT19170.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|172081335|gb|EDT66409.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190562179|gb|EDV16147.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006998|gb|ACP16741.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229264755|gb|ACQ46392.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
          Length = 896

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 912

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I + +  +      + RAEE +  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 527 IITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEK 586

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E    YI  I  + Q LL LI+++LD+++IEAG  + + S++ L  ++ E      +R 
Sbjct: 587 SE----YINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRI 642

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
              ++ +    D     V  +   + Q+I+NLL+NA+KFT   G++         +  Y 
Sbjct: 643 TSPDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQK-GKITFGYKLQKEK-IYF 700

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   +   +   F +      +  QG GLGL I +SI+   GG+  + SK+ 
Sbjct: 701 YVTDTGCGIPAEKQDKIFERFIKL----NNFAQGTGLGLSICKSIVDAMGGEIGVDSKVG 756

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 757 NGSTFWFTLP 766


>gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 984

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 9/271 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E   L  +LE    + +   + A+  N AKS FL+ MSH++RTP+N I G +E+ +   
Sbjct: 451 TELRKLQHQLEERTEMLNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTEIADAHL 510

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   E  K+ +  I  S  HLL LIN++LD+S+IE+G+  +  + +SL D+VRE I++
Sbjct: 511 QDP---ERVKDCLHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMI 567

Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
                + K  +     ++      ++DE  +RQ++LNLLSNA KFT   G++   V    
Sbjct: 568 TLPNVRAKRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLE 627

Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D GPGI E     +  +F +   +     +G GLGL I + +     G  
Sbjct: 628 NNAALSFTVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDI 687

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++ S   +G      LP    +  IP    E
Sbjct: 688 ILGSLPGQGTTFRVTLP----MQHIPVPPIE 714


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + ++    E R  AEE + AKS FLA+MSHE+RTP++AI+G SE+     +     
Sbjct: 323 ITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMTLNTNLTG--- 379

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  + ++ + LL++IN+ILD+S+IEA + EL     +L +++ + + +L+++A+
Sbjct: 380 -EQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQLSVLKVQAE 438

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
           EK IE+   +   +S  +  DE  + Q+I+NL+ NA+KFT   G V V+V     +  G 
Sbjct: 439 EKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEK-GYVEVSVDHVGSFEEGA 497

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                +KD G GI+E +   +  SF Q +        G GLGL I++ ++   GG     
Sbjct: 498 VLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFS 557

Query: 460 SKLREGVEVIAI 471
           S+   G E    
Sbjct: 558 SREGWGSEFKFT 569


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/257 (37%), Positives = 146/257 (56%), Gaps = 6/257 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + Q     L+A LE +++   +  +RAE  N AKS FL+ +SHELRTPLNAILG+S+++ 
Sbjct: 500 AYQLRDTLLLAALEFSQTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMN 559

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   +   KEYI  I+RSG+HLL+LIN++L++S+IEAG+  L+E++  L  ++   
Sbjct: 560 RN---TSLSPQQKEYIEIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSI 616

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
               QL+A  K + +  +    +   V  DE  +RQV+ NLL NA+KFT  G   + VT 
Sbjct: 617 EKTFQLKASAKKLGLIFQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTT 676

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                   + S+ D GPGIAE E+  +   F Q    +KS  QG GLGLPI++  +   G
Sbjct: 677 KEAPCLKIFFSVSDTGPGIAESELSVLFDPFVQTQAGLKS-MQGTGLGLPISRQFIELMG 735

Query: 454 GQFLIRSKLREGVEVIA 470
           G+  + ++L  G     
Sbjct: 736 GELTVNTQLGSGSTFSF 752


>gi|32472478|ref|NP_865472.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
 gi|32443714|emb|CAD73156.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
          Length = 1998

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 8/303 (2%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                + S     +  A            +   + +    ++    E +    +L   K  
Sbjct: 1358 IADYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHERTESVVRHSKELELTAQQLTATKEK 1417

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +  AEE N AKS FLA MSHE+RTP+  ILGF+E++    +   ++   + ++  I
Sbjct: 1418 LQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVT--DDAERESHLQTI 1475

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            H +G HLL+L+N+ILD+S+IEA + E      +   +V++ I  L+ +A EK+I +  ++
Sbjct: 1476 HSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLEIQV 1535

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409
            D      +++D   +RQ++ NL SNA+KFT  GG V +++             I+++D+G
Sbjct: 1536 DSEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKMKIAVRDSG 1594

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             G+ + +   +   F Q  ++      G GLGL I++ +     G   + S+   G ++I
Sbjct: 1595 IGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQMI 1654

Query: 470  AIL 472
               
Sbjct: 1655 LNF 1657


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             ++       +LE       E R +A +   AK+ FLA+MSHE+RTP+N +LG + ++ 
Sbjct: 386 RTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLL 445

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        ++Y+  +  S + LL +IN+ILD S+IEAG++ + +    L   + + 
Sbjct: 446 DTALST----EQRDYLQTLRHSSESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDT 501

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + ML   +Q++++E+   ID      V  D   +RQV+ NLL NA+KFT   G V + V 
Sbjct: 502 LDMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGNAIKFTEQ-GEVLIQVL 560

Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D G G++      +  +F Q   +      G GLGL I + ++ 
Sbjct: 561 PLDEDPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKRLVE 620

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             GG+  ++S    G  +   +      +  P
Sbjct: 621 LMGGEIGLQSMPGLGTRIWFTVRFALQADAAP 652


>gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
 gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
          Length = 896

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 696

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 13/281 (4%)

Query: 219 AEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            + D L    E  K L +     R  AE  N  K  FLA++SHELRTPLNAILG+S++I 
Sbjct: 286 TDIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATLSHELRTPLNAILGWSQLIL 345

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               G + NE  +  +  I R+ +    LI ++L++S I + +  L      L  I    
Sbjct: 346 Q---GTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEWDLGAIAEAA 402

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  +   A+ K I I + ID +   V  D   ++Q+I NLLSNAVKFT  GG V V V  
Sbjct: 403 VESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIWNLLSNAVKFTPDGGTVEVIVER 462

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            + + + I +KD+G GI    +  V   F Q   ++     G+GLGL I + ++  HGG 
Sbjct: 463 AASQLRVI-VKDSGVGIKPEFLAYVFDRFRQADSSLTRNHGGLGLGLAIVKQLVGLHGGT 521

Query: 456 FLIRSK-LREGVEVIAILPNTRVLNF-----IPEDNHESTQ 490
               SK   +G      LP   + +      +P+       
Sbjct: 522 VCAESKGEGQGASFCVTLPPAPIKDGMDRQLLPDAKPSQKD 562


>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 834

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 150/282 (53%), Gaps = 16/282 (5%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +   +    +     L   +E   +  +  R++A++ N AKS FLASMSHELRTPLNAI
Sbjct: 330 QEVQHRTAELEQLNQSLEIHVEQRTAALEAARQKADQANRAKSEFLASMSHELRTPLNAI 389

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LGFS+++  +          +  +  I+RSG+HLL LIN++LD+S+IEAGR  L+ +  +
Sbjct: 390 LGFSQLMSEDQAIST---QQQNTLQIINRSGEHLLELINDVLDMSKIEAGRTTLNPADFN 446

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L  +++    M  L+AQ K +++  K+D  L   +  DE  +RQV++NL+ NA+KFT   
Sbjct: 447 LHGLLQSLYDMFNLKAQSKGLKLALKLDDHLPQFIHGDESKLRQVLINLIGNAIKFTEA- 505

Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G V +T G     G        +++D+GPGIA  E+  +   F Q   +   A+QG GLG
Sbjct: 506 GEVSITAGMAEQTGDGELSLTFAVEDSGPGIAPDEVERIFDPFIQAKSS--QAQQGTGLG 563

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLN 479
           L I+   +    G   + SKL  G      +    P + V  
Sbjct: 564 LAISAQFVRLMKGDISVCSKLSRGSIFRFTIGCQTPLSSVAP 605


>gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 566

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +++F+A++SHEL+TPL +I GF+E +        ++    E++  I      L  LI++
Sbjct: 346 MRTQFVANVSHELKTPLTSIKGFAETLR----YVEDDNQKGEFLDIIDDEVDRLTRLISD 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE   + + +    + +I++    +L+  A  KNI +    +  + ++  D   
Sbjct: 402 ILTLSDIEIRPF-MKKEEFDVNEIIKAVCGLLEKSASRKNISLKVFGE-DVPNLIGDNDK 459

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q+I+NL+ NA+K+T  GG V V   +T      IS+KDNG GI +  +  +   F + 
Sbjct: 460 FKQMIINLVDNAIKYTEAGGEVSVYKKYTKDD-VIISVKDNGVGIPKEHLQRIFERFYRV 518

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+ N  G   I SKL  G E I  +P
Sbjct: 519 DKARSRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEFIITIP 564


>gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 882

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHNNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 576

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 141/291 (48%), Gaps = 8/291 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  S   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++    +     E   E +  +  S + LL +I++ILDLS+IE+G + L+E 
Sbjct: 231 NSVLGMLDILRQSRL----TEQQFEVLNQMECSAELLLAIISDILDLSKIESGSFHLNEK 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +L D V   I   +  A  KN+    + +  S    W D   + QV+ NL+ NA KFT
Sbjct: 287 WTNLSDAVTLVIYQQKQLATNKNLSFEYQCNLDSNKQYWIDSTRVSQVLFNLIGNASKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG ++VTV   S     IS+ D G GI + +I  + T+F QG  +I     G GLGL 
Sbjct: 347 DFGG-INVTV-IESDGQLVISVIDTGIGIPKAKIGNLFTAFHQGDSSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHESTQYKC 493
           I + ++    G   ++S+   G      +P  TR     P  +  S   K 
Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRPVKSEPSYPSKA 455


>gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 882

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHNNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 1045

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I E +  ++     + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +EYI  I  +   LL LI++ILDLS+IEAG  + S S + L DI+ E   +++ R 
Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402
           +   I++          +  ++  + QV+ NLL+NA KFT+ G    +T G+   GR  Y
Sbjct: 777 ETSGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 833

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+ 
Sbjct: 834 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 889

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            +G      +P      + P D     + K
Sbjct: 890 GKGSTFWFTIP------YQPADADNKKEDK 913


>gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 1045

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I E +  ++     + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +EYI  I  +   LL LI++ILDLS+IEAG  + S S + L DI+ E   +++ R 
Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402
           +   I++          +  ++  + QV+ NLL+NA KFT+ G    +T G+   GR  Y
Sbjct: 777 ETSGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 833

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+ 
Sbjct: 834 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 889

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            +G      +P      + P D     + K
Sbjct: 890 GKGSTFWFTIP------YQPADADNKKEDK 913


>gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 624

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 144/257 (56%), Gaps = 11/257 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E +N  K++FLA+ SHE+RTPL +I+GF+E++  +       E ++EY+  I  SG+HL
Sbjct: 232 LEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYQAE-RERHQEYLQIIQSSGKHL 290

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L+LIN+ILDLS+IEA + E+    + +  + +  + +++ +A +K +++  +I   +S++
Sbjct: 291 LSLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLALVKEKAGDKGLKLQIQISEDVSTL 350

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   ++Q++LNLL NA+KFT + G V + V          ++ D G GI+E ++  + 
Sbjct: 351 LVDPLRLKQMLLNLLFNAIKFTNV-GSVGLRV-VIKDSWLRFTVWDTGVGISEEDLSLLF 408

Query: 422 TSFGQGSIAIKS---AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--- 475
             + Q    I +      G GLGL + + +   HGG   +RS+L +G E   ILP     
Sbjct: 409 RPYTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTIILPLKSHR 468

Query: 476 --RVLNFIPEDNHESTQ 490
             + L   P+ + E + 
Sbjct: 469 TTQTLEIQPKQDLELSD 485


>gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017]
 gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017]
          Length = 735

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  K  L  ++E            A+  N AKS FLA+MSHELRTPL  ++G S  + 
Sbjct: 337 QVRQHKQTLDKQVEQRTQELHAALLAAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLL 396

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++GPL +   +  +  IH SG+HLL LIN+ILD S +++G+  L+ S  SL  +V++ 
Sbjct: 397 RWSLGPLTD-KQRSCLQTIHDSGEHLLELINDILDFSHVQSGKATLNVSDFSLTTLVQQL 455

Query: 336 IIMLQLRAQEKNIEIF--QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           + +++ +A    +++    KI P      AD + ++Q++++L  NA+KFT +GG+V + V
Sbjct: 456 LQVMRDKADAHQVQLKANLKIPPERDRFIADLRRVQQILISLTDNAIKFTPMGGKVTLRV 515

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            W         ++D G GI+  ++P +   F Q   +     +G GLGL +AQ  +  H 
Sbjct: 516 -WVETNTVVFQVEDTGIGISSSQLPHLFEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQ 574

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G      LP
Sbjct: 575 GWIDVSSEEGQGSIFTVQLP 594


>gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 631

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L   A     I  L  A +   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS +
Sbjct: 377 LLILIAAITYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +        + +  +EY   I  +   LL LIN+ILD+S+IEAG ++   S I +   + 
Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E    ++LR +++ + +         +++ D+  + Q+I N + NA+KFT   G + +  
Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFT-QIGSIRMGY 551

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      + D G G++E +   V   F +         QG GLGL I Q I+   G
Sbjct: 552 RLKDADTICFYVSDTGCGMSEEQCRHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G      LP
Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627


>gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1084

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 14/292 (4%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +      +      H   S +++L+  A +  L  +        +  +  AE  N AKS 
Sbjct: 561 LWGLLACYQNSHPRHWQSSEIQLLNQIAHQLGLAIQQSELLKALETAKNTAESANRAKSD 620

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHELRTPLNAILGFS+++         +E  KEYI  I++SG+HLL LI  +LD+
Sbjct: 621 FLAHMSHELRTPLNAILGFSQLLNN---DENLDEEQKEYIDIINQSGEHLLTLIKSVLDM 677

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           ++IEAG   L    ++L  +V+    M +L+AQ KNI++   I   + S +  DE  +RQ
Sbjct: 678 AKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQCKNIDLTVDIGNDVPSLIMGDEGKLRQ 737

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLT 422
           V++NLL+NA+KFT   G+V +++  +  +             I+D GPGI   E P +  
Sbjct: 738 VLINLLNNAIKFTEE-GKVILSIKKSQQQQEKSSQIIPLRFEIEDTGPGIDIEEAPRLFQ 796

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F Q  +  K+  +G GLGL I+   +   GG   +   ++ G      LP 
Sbjct: 797 PFFQTKLGQKTQ-EGTGLGLTISYEFVHLMGGTLQVSCPIKGGTIFYFTLPV 847


>gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
          Length = 917

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 162/371 (43%), Gaps = 18/371 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W  + L               ++ LLIA+ +   +   L  +  ++     +  +   
Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPIGQIKQAVAQ 207

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231
           +   ++                + I              Q   D    ++          
Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               D TRK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+
Sbjct: 268 NIELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RQLDYL 323

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S  +LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E+ 
Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383

Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407
                 +  ++  D   ++Q++ NL+SNA+KFT  G  V    V           IS++D
Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQD 443

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG E
Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503

Query: 468 VIAI--LPNTR 476
                 LP TR
Sbjct: 504 FWISLNLPKTR 514


>gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1432

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 15/342 (4%)

Query: 159  LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            LP         V+   S      +H+  I                         +     
Sbjct: 829  LPILYEDQVLGVIELASFSRFSEVHLAFIDQFVNTIGVSINTIIANARTESLLSESQRLT 888

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E      EL+ + +  +E        +  KS FLA+MSHELRTPLN++L  + ++    
Sbjct: 889  TELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNA 948

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               L+ +  + +   IHRSG  LL LIN+ILDLS+IEAGR ++    + L+ ++      
Sbjct: 949  DQRLSPQEVQ-FATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLMKLLDYVHAT 1007

Query: 339  LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
             +  A ++ +     +   +   +++DE+ ++Q++ NLLSNA+KFT  GG V + V    
Sbjct: 1008 FRPLAIDRGLSFEIAVGEDVPRELYSDEQRIQQILRNLLSNALKFTPSGG-VKLRVERAV 1066

Query: 396  ----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                       +      S+KD G GIA  ++P +  +F Q          G GLGL I+
Sbjct: 1067 GTEFQEETLRDADAVVAFSVKDTGIGIASEKLPVIFEAFQQSDGTTSRKYGGTGLGLSIS 1126

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            + I    GG+ +  S+   G      +P        P D  +
Sbjct: 1127 REIAGMLGGRIIAESEQGVGSCFTFYVPAHYAGVVPPPDVSD 1168


>gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016]
 gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 575

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +S+F+A++SHEL+TPL +I GF+E ++       + E   +++  I    + L  
Sbjct: 342 RLENMRSQFVANVSHELKTPLTSIKGFAETLK----YVEDVENRNKFLNIIDDEAERLTR 397

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+IL LS IE+   +     I +  I+ +   M++  A +K+I+I +     +  +W 
Sbjct: 398 LINDILTLSHIESNEMD-KIEFIDINGIIDDVCYMMKPFADKKHIKIKKISCE-MPDIWG 455

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D    +Q+++NL+ NA+K+T  GG V V   +       I ++DNG GI++     +   
Sbjct: 456 DADRFKQMVINLVDNAIKYTNNGGWVKVGTAFQENDCL-IWVEDNGVGISKEHQERLFER 514

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   A   ++ G GLGL I + I     G   + S++ +G +    +P
Sbjct: 515 FYRVDKARSRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIP 564


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 14/282 (4%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L        +      ++L  Q +    I++++ A+S     ++ AE  N A+  FLA
Sbjct: 148 WFLLRGAVAARNAEGKPARVLVLQRD----ISDVKAAESALISAKEVAESANKARGAFLA 203

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N I+G +E+     +    +   + Y+  +  S + LL ++N+ILD S+I
Sbjct: 204 NMSHEIRTPMNGIIGMTELALDTQL----DAEQRHYLKTVKSSAEALLTIVNDILDFSKI 259

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAG+ E      S+ D V E + +L + A +K +E+   + P +   +  D   +RQVI+
Sbjct: 260 EAGKMEFESLVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVII 319

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KFT   G V + V       +      SI+D G G+   +   +  +F Q  +
Sbjct: 320 NLIGNAIKFTER-GEVALKVEVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADV 378

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +      G GLGL I+  ++    G+  + S   +G      
Sbjct: 379 STTRRFGGTGLGLAISARLVQLMDGKIWLESTPGQGSVFSFT 420


>gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 939

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 21/366 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALS 198
           Y SATL      + L+ F L         P+  ++ +   I   H        +     +
Sbjct: 175 YLSATLGTFFIFNLLAIFALLNVTASLLRPIEKISDTVNKITQGHFGATKGLNLPTQYST 234

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSR 251
             + +     +         +  D    ++       +E         K A E N  KS+
Sbjct: 235 VVSDLNDISSRLENHRAEILSNVDQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQ 294

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHE+RTPLNAI+G+ ++++ + +    ++  + Y+  I +S  +LL +I++ILD 
Sbjct: 295 FLANISHEIRTPLNAIMGYIQILQKDQL----DKQQRLYMDTIAQSTTNLLTIISDILDF 350

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQ---LRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           S+IEAG+  L  + I++ DIV E   +L    L    K +++  + D  +   V  D   
Sbjct: 351 SKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVR 410

Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +RQV+ NL+ NA+KFT  G     V +     S       I D G GI E ++  +   F
Sbjct: 411 IRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPF 470

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIP 482
            Q   +      G GLGL I + ++   GG   + S+   G       +L  ++    + 
Sbjct: 471 SQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNFRFTIVLKPSQKEQKVE 530

Query: 483 EDNHES 488
           E   +S
Sbjct: 531 EPISKS 536


>gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7425]
 gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425]
          Length = 2051

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/343 (29%), Positives = 163/343 (47%), Gaps = 27/343 (7%)

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            S L   +L          +   L+T A     +  + L    A        +   L ++N
Sbjct: 1470 SVLCAPILHQGKLTGMLYLENNLTTGAFTQDRLEVLQLLAAQAAISIENARLYADLEEAN 1529

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE----NLAKSRFLASMSHELRTPLNAI 267
              + +   E+   + E  +      + R+RAEE     + AKS FLA+MSHELRTPLN I
Sbjct: 1530 HTLEAKVTERTIELEEKNLHLQQEIQERQRAEEAAKVASRAKSEFLANMSHELRTPLNGI 1589

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG+S+++          E  +  +  IH+ G++LL LIN++LDLS+IEA + EL  S  +
Sbjct: 1590 LGYSQILSKN---KALTEQQQNGLNVIHQCGEYLLTLINDVLDLSKIEARKMELYPSTFN 1646

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
            L   +   + + ++RA +K I +  +I   L   V ADEK ++QV+LNL+ NA+KFT   
Sbjct: 1647 LPHFLENMLEICRIRATQKQISLNYEILSPLPQFVHADEKRLQQVLLNLVGNAIKFTPA- 1705

Query: 387  GRVHVTVGW-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            G V   VG+                  +       I+D G GI+  ++  +   F +G  
Sbjct: 1706 GIVTFKVGYVQHWPSAPAEQSSPNQAVAQSKIRFQIEDTGIGISPEQLEQIFQPFHRGGE 1765

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   +G GLGL I++ ++   GG+  ++S L +G      L
Sbjct: 1766 PGQR-TEGTGLGLAISRQLVQLMGGEIQVKSILGQGSLFRLDL 1807


>gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 657

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 1/256 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +     A+    E    A+  N  K+ FLA+MSHELRTPLNAILGFSE+I  E  GP+
Sbjct: 402 HDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPV 461

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +  Y+ Y  DI+ +GQHLL +IN+ILD+SRIE G + L    ++  ++V  C+ ++  R
Sbjct: 462 GD-RYRIYGQDINSAGQHLLAMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTR 520

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+   I + + +  +L S+  D +  +Q+++NLL NAVKFT  GG V +     S  G  
Sbjct: 521 AEAAGIRLREDLPETLPSLMIDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMA 580

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G G++E +I   L+ FGQ    +    +G GLGLP+A+S+   HGG   I S  
Sbjct: 581 FHVADTGIGMSEADIAIALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEIISTP 640

Query: 463 REGVEVIAILPNTRVL 478
            EG  V    P   V 
Sbjct: 641 GEGTTVSVYFPAACVA 656


>gi|323499089|ref|ZP_08104069.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315924|gb|EGA68955.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 774

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 162/386 (41%), Gaps = 13/386 (3%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFL 165
             +       G+   +  +  P +   +   I      T  I+  ++     ++  A   
Sbjct: 101 RQMQQDSSLKGVSDGVFDVRAPISIGGKQYAIVDMGFETAPISAMLNNAQKALVGIATVE 160

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                + +L+    ++  +  ++ A            +     +   ++       DD+ 
Sbjct: 161 VLLVALFSLALGTYLTRGLTRLASAANQVGQSGPGFQLN---HQGTDELSQVARAFDDMS 217

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A+LE      +  R  AE  N +KSRFLASMSHE+RTP+N +LG   ++E   +    ++
Sbjct: 218 AKLERDYIDLNAARADAEMANDSKSRFLASMSHEIRTPMNGVLGILNILEETNL----SK 273

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +     SG  LL++IN+ILD +R+E+    L      L   V   +      A  
Sbjct: 274 EQRKLVTTATESGHFLLSVINDILDFTRMESNTLILESKPFDLHRCVTSVVDGFYPTATS 333

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI 403
           +++ I   I+P +   V  DE  ++Q++LNL+ NA+KFT  G  R+ +++  +      I
Sbjct: 334 QDLLIHCYIEPDVPIHVMGDENRIKQILLNLIGNAIKFTHDGSVRIKMSLVPSDDSQATI 393

Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I D G GI++  I  +   F         +++G GLGL I + +     G   ++S+
Sbjct: 394 QCEISDTGIGISKSAIDYLFDEFTMVDQTYSRSKEGSGLGLAICKRLCNLMDGDVKVQSE 453

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487
            + G      +    V    P  + E
Sbjct: 454 PKVGSTFTFTIKLDTVSELNPHVDAE 479


>gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1116

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 10/318 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            L +          I L        S       + +  +   +      D+   E E  +
Sbjct: 524 TLGSSRQEVFLEARILLTDGQYHWTSTQIIYVENPYSGDQLAILLSRRIDEQKHEEEQHR 583

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  + A+  ++AKSRFL++MSH++RTP+NAI+G + +         + E  +E + 
Sbjct: 584 QALQSALESAKAASVAKSRFLSNMSHDIRTPMNAIMGMTAIAASHM---DDQERVRECLR 640

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I+ S  HLL+LIN+ILD+S+IE+G+  L +   +  ++V E   +++ +A   ++++  
Sbjct: 641 KINLSSSHLLSLINDILDMSKIESGKISLRDEPFNFAELVAEVAELIRPQADAGHLDMNL 700

Query: 353 K-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIK 406
             +D     V  D   +RQ+  N+LSNAVK+T  GG + V +       +          
Sbjct: 701 SLMDLKDELVAGDPLRVRQICFNVLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFECS 760

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G++   +  +   F +   +  S   G GLG+ I ++I+   GG   + S+L EG 
Sbjct: 761 DTGLGMSPEFLDKLFLPFERVQDSTHSRVTGTGLGMAITKNIVDMMGGDIQVESELGEGS 820

Query: 467 EVIAILPNTRVLNFIPED 484
                LP  R+ N  PE+
Sbjct: 821 AFTVTLPL-RLQNVPPEE 837


>gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896]
          Length = 602

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHEL+TP+  I  +SE +    +   +    K+++  I +    + 
Sbjct: 369 ERLDHMRKEFVANVSHELKTPITTIRTYSETLLDGAL--KDPAIAKKFMEVIVKESDRMT 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LI ++L LS I+  +   +     +  ++++ I  ++L  Q K+  +   +      +W
Sbjct: 427 SLIRDLLQLSHIDFKKETWNFDYTDINTLIQDSIDKMELYYQTKHQTLVSNLLGQSRQIW 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  M QVI+N+LSNA+K+T   G++ +++ + S     I I+DNG GI + ++  +  
Sbjct: 487 VDKTKMEQVIINILSNAIKYTEENGKISLSL-FVSEGILDIVIEDNGIGIPKEDVEHIFD 545

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +        + G GLGL IA+ I+  HGG   +RS   +G      LP   
Sbjct: 546 RFYRVDKGRSRQQGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTVFTISLPIEP 599


>gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 535

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 181/435 (41%), Gaps = 40/435 (9%)

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
            +        ++   LAV     + G+++    +            ++  + +   +  +
Sbjct: 104 LWIIPRYIEAFTF--LAVPFLMANPGRRIRIHYLIP----------VISLVLLASVFAGI 151

Query: 125 TL--VEPGTWTPEYLTIYKSATLLIALSISALSNF----------MLPYAVFLSFFPVVV 172
                 PG     +  I +     I L    L                     +     +
Sbjct: 152 FPDSFIPGEGLTPFKIISEYIISTILLISGILIWRNKEKFDKEVVKYLLLACGATILAEL 211

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAE 227
           + +    +      +     +A+    +  +         ++++   +  D        E
Sbjct: 212 SFTFYVSVYGFSNMVGHLFNVASYYFIYVIMIRKKLLEPYEVINDLYQNLDKKVKVRTRE 271

Query: 228 LEVAKSLSDETRKRA----E---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           LEVA     + ++R     E   E N  KS F A+M+HELRTPL +++ F E++  E  G
Sbjct: 272 LEVANMRLAQGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSG 331

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P+  E  +E + DI  S Q L+ L+N+ILD+++ EAG   + +  + L D++R     + 
Sbjct: 332 PITPE-QRENLLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMS 390

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A +  I +  +   +L  V+ D   ++Q+++NL++NA+KFT  GGR+ V+     G  
Sbjct: 391 AIAHQNGISLDVEKT-TLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVSAN-GEGDF 448

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS++D G GI+   +P +   F QG    +   +G GLGL + +++     G+  + S
Sbjct: 449 AIISVQDTGIGISPELLPHIFEKFRQGDHPKQRR-KGTGLGLALVKTLAELQDGKVAVDS 507

Query: 461 KLREGVEVIAILPNT 475
           ++ EG      LP  
Sbjct: 508 EVGEGSCFKIYLPFA 522


>gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 685

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 143/251 (56%), Gaps = 5/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+ A+    + ++ AE+ N AKS FL+SMSHELRTPLNAILGF+++ E   +    N
Sbjct: 280 ITQLKQAEEKVVKAKELAEKANKAKSEFLSSMSHELRTPLNAILGFAQLFE---LDKNLN 336

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E IG+I ++G+HLL LI ++LDL++IEAG+ +     ++ + +V ECI +++  A 
Sbjct: 337 PAQRENIGEIEKAGKHLLELIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRPLAV 396

Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  +EI     +   +SV AD   ++QV +NL+SNA+K+    GRV +    T      +
Sbjct: 397 KNRVEINVHNFELGNASVRADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEGHLRV 456

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G GI   +   +   F +   A +   +G G+GL I + ++   GG+    S   
Sbjct: 457 SVQDTGFGIPLKQQKYMFQPFNRL-GAERGEIEGSGVGLVITRQLVEQMGGELGFSSDEG 515

Query: 464 EGVEVIAILPN 474
           +G +    LP 
Sbjct: 516 KGSKFWVQLPL 526


>gi|237746428|ref|ZP_04576908.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377779|gb|EEO27870.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 1070

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 9/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++L    +  D+  + E  +    +  K AE+ N AKS FL+ MSH++RTP+N I+G +
Sbjct: 527 NRLLLTFRDIHDVREKEERVRQTLTDALKVAEKANNAKSDFLSKMSHDMRTPMNGIIGLA 586

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +           E  KEY+  I  + +HLL LIN++LD+S+IEAGR  L E    ++ +
Sbjct: 587 MIAGQHR---HEPERMKEYLTKISVASRHLLGLINDVLDMSKIEAGRIVLVEEDFDVVAL 643

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +R+ + ++   A+ +   I  ++D ++   V  D   ++QV +NLLSNA+KFT  GG + 
Sbjct: 644 LRDVVDIVAPDARGRRHAIRFEVDETVFPFVKGDSLRLQQVFMNLLSNALKFTPEGGHIG 703

Query: 391 VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           V+V  T+              D+G G++   +  + + F +   ++ S   G GLG+PI+
Sbjct: 704 VSVSETASPFDGYGAYRFVFSDDGIGMSPAFMDKLFSPFEREENSMTSRVSGTGLGMPIS 763

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           ++I+    G   + S+   G      
Sbjct: 764 KAIVEMMNGTIDVESERGRGTVFTVT 789


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 1160

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +LE          +  E+ N  +S FLA+MSHELRTPLN+I+  S+++  + +   + +
Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E I  I+++GQ LL LIN++LDLS++E+G+  L+       +++ +   M +  A+E
Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404
           KNI  F + D   S +  D   + Q++ N LSNA KFT+ G  +    +          S
Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFS 692

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  I  +   F Q    I     G GLGL I++ +     G+  +RSK+ E
Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 753 GSTFFLKLP 761


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 12/264 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   + A+    E R  A      K+ FLA+MSHE+RTP+NAI+G + ++    +     
Sbjct: 1059 ITSRKAAEHALAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDTALTK--- 1115

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E+   + RS   LL L+N+ILD S+IEAG+    +    L   V + + +L  +AQ
Sbjct: 1116 -EQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQ 1174

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
             K +E+   +D ++ + V  D   +RQ+++NL+ NA+KFTA  G V + V   +  G   
Sbjct: 1175 SKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAA-GEVFLHVTRETQGGLDL 1233

Query: 402  -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +IKD G GI E     +  +F Q   +      G GLGL I Q +++   GQ  + S
Sbjct: 1234 LRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVES 1293

Query: 461  KLREGVEVIAI--LPNTRVLNFIP 482
               +G         P    L   P
Sbjct: 1294 HSGQGSTFWFTAQFP-ETTLATAP 1316


>gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1]
 gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 816

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 12/289 (4%)

Query: 205 YHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             + ++  + L  Q+E  +    EL+V K   +E  KR  +    K+ F+A+MSHELRTP
Sbjct: 242 NRILEAQNRELQAQSEELEAQTEELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTP 301

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+I+G +E+I         +   KE +  I+ SG+ LLN+IN+ILDLS+IE+G+ +L  
Sbjct: 302 LNSIVGLTELILKN---NQLDNELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEI 358

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L + +     +++ +  EKNI            +  D+  + Q++LNLLSN+VK+T
Sbjct: 359 EEIDLTETIDYVSNIIKPQCNEKNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYT 418

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G + + +     +   I +KD G GI E  +  +   F   ++  K   QG GLGLP
Sbjct: 419 EENGLIELIIE-EDTKYIIIHVKDTGIGIPEDLMQNLFEPF--VTMGRKFNVQGTGLGLP 475

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + + ++   GG+  ++SK+ EG      +P       +P+        K
Sbjct: 476 LTKKLVNLLGGKIAVKSKVGEGTIFTVYIPKE-----LPQSLENQKDEK 519


>gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 677

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 6/256 (2%)

Query: 222 DDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           D   AE E  + + ++  R  AE  N  K  FLA +SHELRTPLNAILG+S+++  +   
Sbjct: 267 DRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLRAKKF- 325

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +  T  + +  I R+ +    LI +ILD+SRI  G+  L+   I L  ++   I  L+
Sbjct: 326 --DQATIDKALETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDALR 383

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A+ K+I I       +  V  D   ++QV+ NLLSNA+KFT  GG+V V +    G  
Sbjct: 384 PLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELV-GDY 442

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI+   +P V   F Q       +  G+GLGL I + ++  HGG     +
Sbjct: 443 AEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTVGAEN 502

Query: 461 K-LREGVEVIAILPNT 475
                G +    LP  
Sbjct: 503 NSSGIGAKFTVSLPIA 518


>gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 652

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHELRTPLNAI+G+SE++  E       E   + +  I  +G HLL LIN++L
Sbjct: 142 SQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPD-LHKIKTAGNHLLGLINDVL 200

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IEAG+ EL    I L  ++ E I   Q   ++K      K    L  +  D   +R
Sbjct: 201 DLSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLR 260

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++LNL+SNA KFT   G + + +  +        + DNG G+ E +   +   F Q   
Sbjct: 261 QMLLNLISNAAKFTEK-GTISLNI-QSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQADA 318

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLNFIPED 484
           +      G GLGL I +      GG   + ++  +G      LP       +++   P  
Sbjct: 319 STTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLPRNAKVQKQIVKTTPTI 378

Query: 485 NHE 487
             E
Sbjct: 379 ETE 381


>gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
 gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMATSMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
 gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
          Length = 2319

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1746 VGISLANAFLYRNASKVSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1805

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1806 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1861

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   +++ ++  + +D       V  D
Sbjct: 1862 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPKLLVLGD 1921

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V             I+  + D G GI+  ++  + 
Sbjct: 1922 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 1981

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    VL+ 
Sbjct: 1982 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2037

Query: 481  IPED-------NHESTQYK 492
             P++       + +STQ K
Sbjct: 2038 APKNSVVKTPWSQDSTQEK 2056


>gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S L EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V + IP +  E T
Sbjct: 749 ATVDDVIPAEVVEET 763


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +   + A++ N AKS FLA+MSHE+RTP+NAI+G S +     +        + YI  
Sbjct: 1203 ELNHAMEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTS----KQRNYIEK 1258

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            +HRS + LL +IN+ILD S+IEAG+ ++      L D++   + ++ L+A++  +E+   
Sbjct: 1259 VHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGLELLLD 1318

Query: 354  IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNG 409
            + P L + +  D   + Q+++NL +NAVKFT  G  V           +     S++D+G
Sbjct: 1319 VPPDLPTALIGDPLRLSQILINLGNNAVKFTEDGEVVVAVRVEEESNAEVRMHFSVRDSG 1378

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             G+ + +   +  SF Q   +      G GLGL I++ ++A   G+  + S+   G +  
Sbjct: 1379 IGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIWVESEPGVGSDFQ 1438

Query: 470  AILPNTRVLNFIPEDN 485
                  +    IPE  
Sbjct: 1439 FTACFEKQQGEIPEPT 1454


>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 837

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 13/263 (4%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + E    +++ + A+      R  AE  N AKS FLA+MSHE+RTPLN ++G  ++++L 
Sbjct: 421 RIEISMDLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLT 480

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            + P+     ++Y     +S   L+ L+ +ILDLSRIEAG+  +  + + L +++R+   
Sbjct: 481 KLDPV----QEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGD 536

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +    A+EK +++   +DP++   +  D   ++QV+ N++ N++KFT  GG V V     
Sbjct: 537 LFSPTAREKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGG-VTVDASLL 595

Query: 397 SG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                       S+ D G GI + ++  +   F Q +     + QG GLGL I + +++ 
Sbjct: 596 PSVHGGQCRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSF 655

Query: 452 HGGQFLIRSKLREGVE--VIAIL 472
            GG   + S+L  G         
Sbjct: 656 MGGNISVVSELEVGTTMYFSVTF 678


>gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 643

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 147/355 (41%), Gaps = 18/355 (5%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                         +  L   + ++      L + V      +  A+             
Sbjct: 146 PQLAPLLPKFLALTAVLLFGGVGVALFLARSLAHRVIQPVETLSKAM---------HDVA 196

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
           +        +     +   L  S   +L+   E++    +L  A    +  R  A   N+
Sbjct: 197 AGGSFTPVEIETHDELFESLADSFNHLLAKLGERE---GDLRAAMRELESARDAANAANV 253

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K++FLA+MSHE+RTPLN +L  +EV+ L  + PL     +E +  I RSG  LL ++N+
Sbjct: 254 LKTQFLANMSHEIRTPLNGVLAMAEVMALGELAPL----QRERLDVIRRSGGLLLAVLND 309

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEK 366
           +LDLS+IEAG+  L +    L   + +     ++ A  K +     +       W  D  
Sbjct: 310 VLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKGLGFEVTVAEEAQGWWRGDAD 369

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQ++ NLLSNAVKFT  GG V   V  T      I + D G GIA  ++PT+   F Q
Sbjct: 370 RLRQIVGNLLSNAVKFTMQGG-VRAHVDLTPAGALRIVVSDTGVGIAPEKLPTLFEKFTQ 428

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              +      G GLGL I + +    GG   + S+  +G      LP  R     
Sbjct: 429 ADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGSTFTVELPLQRGQPTS 483


>gi|197106645|ref|YP_002132022.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480065|gb|ACG79593.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 589

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/469 (22%), Positives = 180/469 (38%), Gaps = 33/469 (7%)

Query: 27  YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
             ++     E + +   + + V  +     ++ A +            W     A  A  
Sbjct: 15  AGARWKVLDERLDIVARTSWDVVAVRVAAGVVAALLCVQPFGLAWSMGWLAAFAATEAGA 74

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
               +              W   L    +A GL W  L L    +          +  + 
Sbjct: 75  RIASRAAWTGGALTRPARFWY--LTWMTLA-GLTWCALALRGWLSGQESLRLAAMAILVT 131

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + +     S+   P A+     P  +      ++       SLA +        +Y+   
Sbjct: 132 VLVHAQGFSSRT-PAALAAMGLPAALLWMLLPLVGGGYDAQSLAIVGFGFTMALSYVAIA 190

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
              +     +    +                  +RA + N AKS FL+ ++HELRTP+N 
Sbjct: 191 ARATARSAAALADAE------------------RRANDANEAKSAFLSMVTHELRTPMNG 232

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G +  ++   + P      +EY   I RSG  LL ++N++LD S+IEAGR +L  +  
Sbjct: 233 VMGMARALQQTDLSP----RQREYADTIVRSGDGLLAILNDVLDHSKIEAGRLDLEVAPF 288

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           +L  + ++ + +    A  K +E+   IDP L   V  DE  +RQ+ILNLLSNA+KFT  
Sbjct: 289 NLRAVSQQSLQLWTEAAAAKGLELDCDIDPELPAHVLGDETRVRQIILNLLSNALKFTEA 348

Query: 386 GGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            GRV + +          G  I + D GPG+   ++  +   + Q   +      G GLG
Sbjct: 349 -GRVALALRRAPHADGEGGVEILVSDTGPGMTAEQVARLFRPYSQAEASTARRFGGTGLG 407

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           L I   +    GG+  + S+   G      LP        P +  E+ +
Sbjct: 408 LSICHRLSTMMGGEIGVESEPGRGSTFRVWLPL-PAAEGGPVEVSEAPE 455


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 28/355 (7%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201
           ++  + ++ ++ F       +        L+   ++    +   L     M         
Sbjct: 388 VIAVVELATMTKFNALQQELMKQVTETFGLTVNGVLGRMEIVRLLNESRAMTEELQVQSE 447

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251
            +     +  ++        + L    + A+      ++ ++  EE           KS 
Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAETKSRELEKAKQELEESAEQLILNSNYKSE 507

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLN+IL  SE++       L +E   E+   IH SG+ LL LIN+ILDL
Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENNQDHLTDEEA-EFAKVIHSSGEDLLALINDILDL 566

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370
           S++EAG+ ++  + +++ ++  +        A +KNI+       ++  V + DEK  +Q
Sbjct: 567 SKVEAGKLDIIFNEVNVSEVPVQIEHTFAPVAMKKNIDFHISKADNVVDVFYTDEKRFQQ 626

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSG------------RGQYISIKDNGPGIAEGEIP 418
           ++ NLLSNA KFT   G V + +   +                 I++ D G GI + +  
Sbjct: 627 IVKNLLSNAFKFT-EHGSVTLAINQLAQRQLTSNMQDISTDWLEITVSDTGIGIPKDKHQ 685

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  SF Q   A      G GLGL I +      GG   ++S+  +G      +P
Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSEEGQGSIFTLTIP 740


>gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 633

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+ A     E + +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++ +      + 
Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY G I  + + LL LIN+ILD+S+IE+G Y+   + +    ++ E   + +LR +
Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +             D+  + QV+ NL+ NA+KFT+  G + +          Y  
Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      +  QG GLGL I + I+   GG+  ++S+  +
Sbjct: 562 VSDTGCGMSVEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 618 GSVFWFTLP 626


>gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 144/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNINDMAASMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TET-GSVSLHFDSIETTNLSPDMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             + + IP +  E T
Sbjct: 749 ATIEDVIPAEVAEET 763


>gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 1007

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E E       E + +AE+ +  KS FLA+MSHE+RTPLNAI+GFSE++      
Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E   +YI  I+ + + LL LIN+ILDLS++EAG  EL      L +        ++
Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
            R +  +I + +        V  D   + Q+I N ++NA+K+T+ G    + +G+     
Sbjct: 731 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G Y  +KD G GIA+ +   V   F +         QG GLGL I ++I    GG+    
Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S   EG    A LP       + E+  E  
Sbjct: 844 SVHNEGSLFWAFLPCEVNTLSMVEEKKEEN 873


>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 769

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L ++++     Q E           +      ++ AE   LAK  FLA+MSHE+RTPL
Sbjct: 71  QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL  +
Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
             +L +++   I +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+KFT
Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242

Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V + +               ++D G GIA  +   +  SF Q   +      G G
Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 699

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 145/328 (44%), Gaps = 23/328 (7%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELE 229
           V+ L         +  +       +             +  +      Q      +    
Sbjct: 232 VLGLIDAPGSGAGLETLLETEGRFSDQELVVRTREGASRIILASADVVQVAGQRYLIAGG 291

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +   E R+ AE  N AKS FLA+MSHE+RTPLN ILG + +     +    +   +E
Sbjct: 292 QDVTDLHEAREDAERANRAKSEFLANMSHEIRTPLNGILGMTSL----ALMTCTDHKGRE 347

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G   +SGQHLL +IN+ILD+S+IE+ R+EL ++  +  + +      +++ A  K + 
Sbjct: 348 YLGLAQQSGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVR 407

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402
               + P +   V  DE  +RQ+ +NL+ N++KFT   G V V V   +  G+       
Sbjct: 408 FDATVAPDVPDCVIGDEGRLRQIYVNLIGNSIKFTTA-GEVEVRVAVAATDGRREPAAMG 466

Query: 403 -------IS-IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  IS I+D G GI +  +  +  +F Q   ++ +   G GLGL I++ ++   GG
Sbjct: 467 GKGRICLISSIRDTGIGIPQKNLKRIFDTFAQV--SVGARYGGTGLGLSISKRLVELMGG 524

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +  + S+   G          RV    P
Sbjct: 525 RIWVESEPGRGSTFHFTAELLRVAPGEP 552


>gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 907

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E    +   +E    A   + AK+ FL+SMSH++RTP+NAI+G + +I    +   + E
Sbjct: 374 EEQARQRRALEEAYHAARVASEAKTNFLSSMSHDIRTPMNAIMGMA-LIAQTNLA--SPE 430

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + +  I  S +HLL+LINEILD+S+IE+GR +L    +SL +++R  + M Q   +E
Sbjct: 431 RVADCLDKISVSSRHLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMCQPLLRE 490

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399
           K +E           ++  D   ++QV++NLLSNAVK+T  GG V   V           
Sbjct: 491 KGLEFHVSASQVRHENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELPTGIKKRG 550

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++DNG G+    +P +   F +      S  QG GLG+ IA++I+    G   + 
Sbjct: 551 QYEFVVEDNGIGMPAAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMMNGTITVE 610

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G      LP  
Sbjct: 611 SEPEKGSRFTVSLPFE 626


>gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 18/270 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   ++ +      ++ AE  +  KS FLA+MSHE+RTPLN ILG +E+     +     
Sbjct: 428 VTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILGMTELTLRTGLTR--- 484

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S   L  L+ +ILD SRIEAG+ EL      L +I++  +  ++++A+
Sbjct: 485 -EQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQAALKPMEMQAE 543

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K + +  +IDP++   +  D   +RQV+LNL+SNA+KFT  GG + + V  T+      
Sbjct: 544 AKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSGG-IDIDVLPTATSHTPS 602

Query: 400 --------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                       S+ D G GI       V   F QG  ++    +G GLGL I++ ++  
Sbjct: 603 GQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSRQYEGTGLGLAISRQLVEL 662

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GG   + S + +G      +   R +  I
Sbjct: 663 MGGAIWVESAIGQGATFNFTVALERAIAPI 692


>gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 638

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/465 (24%), Positives = 176/465 (37%), Gaps = 37/465 (7%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           L      + L V+LV         +            +    + +         +I  + 
Sbjct: 13  LISAGLPVMLIVVLVVGWMATLRIDRYLEAREAKLSDIGQIVVQMEYYPDQHQAEIAMIR 72

Query: 105 VWR-----IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL---IALSISALSN 156
                          I       L  LV   T       +  +  LL   +A +    S+
Sbjct: 73  REHMADLNRRFGQEMILSVTILALGLLVPLITARHLSKLVGANLQLLEEHMAQAGPGGSS 132

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---------- 206
            M     F  F  VV  L T                     +    I             
Sbjct: 133 LMPRTFDFKEFGSVVATLRTTLHERSEAERRWRRAEQELVDANADLIKRARELQDGRRIA 192

Query: 207 ---LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +  + +  +  +A    L   +E AKS        A+  N AKS FLA+MSHE+RTP
Sbjct: 193 LSMMEDAELARVELEAINTRLGEVIEQAKS----AAHHADVANEAKSSFLATMSHEIRTP 248

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF +++    +    N   +EYI  +  S + L+ LIN+ILD S+IE+GR E   
Sbjct: 249 LNGVIGFIDMLSQTEL----NAEQQEYIQSLQMSSETLMALINDILDFSKIESGRMEFET 304

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            +I+L+ ++RE   +    A +K +E+       +  V   DE  +RQ+++NLL NAVKF
Sbjct: 305 RSINLVRLLRETTQLFFGEAAKKGVELKLDFSEEVPRVVRGDETRIRQILINLLGNAVKF 364

Query: 383 TAIGGRVHVTVG----WTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           T   G + V V     WT+G        I D+G G+ E ++  +   F Q   +      
Sbjct: 365 TDT-GSIAVAVHCYEPWTTGEVCEIEFEITDSGIGMTEDQVSKLFHPFLQADSSTTRKFG 423

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL I + +    GG+    S + EG      +    V +  
Sbjct: 424 GTGLGLAICKRLSEAMGGRIWATSTVGEGSCFFVRIRLEAVGDVA 468


>gi|255016168|ref|ZP_05288294.1| putative signal transduction histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 798

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 403 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 459

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 460 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDLENLYGEQAKSKGISYETILASDLE 519

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  T            + D G GIAE
Sbjct: 520 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 579

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 580 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 639

Query: 475 TRVLNF 480
            ++   
Sbjct: 640 GKIKES 645


>gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
 gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
          Length = 735

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 11/261 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           S  D   K+A      K  FLA+MSHE+RTPL+ ILGF+ +++   +    +ET  E++ 
Sbjct: 223 SELDIAEKKALVAAQTKENFLANMSHEIRTPLSGILGFTNLLQKRPL----DETSAEFVS 278

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I RSG++L+ +IN+ILDLS+IEAG   ++    S+  +V         RA+EK + I  
Sbjct: 279 SIQRSGENLMAIINDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLTISS 338

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDN 408
            I+PS+  ++  D   + Q+++NL+ NA+KFT  G   V +     + +       I D 
Sbjct: 339 TIEPSIPDTLVGDATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKISDT 398

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F QG  +      G GLGL I +S++    G   + S+  +G   
Sbjct: 399 GIGIDKEKLTEIFERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTF 458

Query: 469 IAILP---NTRVLNFIPEDNH 486
              +P       L  +P  + 
Sbjct: 459 HFYIPYGIAEEQLTVLPAADP 479


>gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
 gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
          Length = 958

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 14/272 (5%)

Query: 210 SNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +  ++L  ++   +L+A+       A  L  + ++ AE  N +K+ F+++MSHE+RTP+N
Sbjct: 425 AQEEVLKHKSRLVELVAQRTQELSKANKLLAKAKESAELANKSKNIFISNMSHEIRTPMN 484

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGFS ++    +        K Y+    ++ + LL+L+ + LDLS+IEAG+  +    
Sbjct: 485 AILGFSRLLSHTKLNN----QQKTYLSRAKKATKSLLSLLEDTLDLSKIEAGKLTIENIP 540

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
                IV E   +L+L A+EK + I  +ID  L   +  D   ++QV++NL++NA+KFT 
Sbjct: 541 FQPKVIVTEITELLELNAKEKGLLIEYEIDEHLPKYLLGDPNRIKQVLINLINNAIKFT- 599

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G ++V+V   S           + D G GI +  +  +   F Q   +    E G GL
Sbjct: 600 QDGSIYVSVFVNSKNIHNCCVEFVVSDTGIGIKKENLADIFEHFTQVDNSTTKKEDGTGL 659

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I++ ++   GGQ  ++S+ REG      L
Sbjct: 660 GLAISKELVKRMGGQIDVQSEYREGSTFSFEL 691


>gi|167034739|ref|YP_001669970.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
 gi|166861227|gb|ABY99634.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
          Length = 643

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +    E + A +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         +Y      S  HLL +IN+ILD SRIE    +L     
Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ + +  ++        V  D   +RQ++LNL+ NA+KFT 
Sbjct: 339 NLGELITSSVQSFQHSAQQRGLGLHLELPAGFEQLQVNGDPTRIRQILLNLIGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W     Q I    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 399 R-GQVQVEARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFIAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL IA+++    GG+    S+   G      +P        
Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLALATPAP 498


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS+FLA+MSHE+RTP+N ++GF++++    + P      ++++  I  SG  LL++I++I
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367
            L+ S++EAG  EL E+ I +   + E +  L  +  EK IE+   IDP++ SV   D   
Sbjct: 875  LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR--GQYISIKDNGPGIAEGEIPTV 420
            + Q++LNLLSNAVKFT   G V + V       T       + S++D G GI + +   +
Sbjct: 935  LHQILLNLLSNAVKFTEE-GEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRL 993

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              SF Q   +      G GLGL I+Q +    GG+  + S + EG      +      + 
Sbjct: 994  FESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEEAEDG 1053

Query: 481  IPEDNH 486
               D +
Sbjct: 1054 AQTDKN 1059


>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 769

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L ++++     Q E           +      ++ AE   LAK  FLA+MSHE+RTPL
Sbjct: 71  QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL  +
Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
             +L +++   I +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+KFT
Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242

Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V + +               ++D G GIA  +   +  SF Q   +      G G
Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 897

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 5/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K A E N AKS FLA+MSHE+RTP+N ILG +++     +        +EY+  +  S Q
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL++IN+ILD SRIE+G+ ++    + +   V+  I      A EK IE+   I P++ 
Sbjct: 315 SLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVP 374

Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            V   D   +RQ++ NLL NA+KFT  G  +               I+D G GIA  +  
Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDNRWRFRIRDTGIGIAPEKQK 434

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +F Q   +      G GLGL I+  +++  GG+  + S+   G E    LP  
Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVESQPGAGSEFAFTLPLE 491


>gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 9/309 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++ + + +     +S   + +  L+        L+++ ++      +  +   +L     
Sbjct: 92  IAVELMKAGATDYLSKFRVSSETLAQVLRNAMRLYRAEMQTAIAYQQLRESHEQLVRKNQ 151

Query: 234 LSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +           +  E +  KS+FLA+MSHELRTP+NAI+GFS+++     G L    
Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTG-Q 210

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  +G+HLL L+NE+LD S++E GR EL      L  ++   +  ++  A+ K
Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAK 270

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + +  +ID     +  D   ++Q+++NLLSNA+KFT   G + + V    G    I +K
Sbjct: 271 KLSLLVQIDLQNPLLVNDPVRIKQILINLLSNAIKFTDS-GSIWIDVKDLPGSWVEIRVK 329

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA  +   +  +F Q   +I     G GLGL I  S++    G+ ++ S+L  G 
Sbjct: 330 DTGIGIASKDFKYIFEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGS 389

Query: 467 EVIAILPNT 475
                LP  
Sbjct: 390 IFTITLPRQ 398


>gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 185/426 (43%), Gaps = 23/426 (5%)

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
              +            A      + +  +   +  V   R  LL           +  ++
Sbjct: 166 HGTLMAFSVASATLYAAGLAFGAESLARTSDTLLSVEEERYRLLALH--------MSDVI 217

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
              +       I  +   L+ L  + L+   L   V ++  P  +   + A +      +
Sbjct: 218 SRHSRNGAVQFISPAVETLLGLPAARLAGHGLFDRVHVADRPAYLKALSDAGLGGEGRSV 277

Query: 188 SLAGMLATA--------LSFFTYITYHLF------KSNVKILSCQAEKDDLIAELEVAKS 233
                   A           F ++           +S+    +        + + ++ + 
Sbjct: 278 EFRVRREVARDDRGRPTAPEFIWLEMRCRPFAPGTQSSAAGETGVVAVMRDVTDRKLQEQ 337

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             ++ R  A   + +KSRFLA+MSHELRTPLNAI+GFS++I  E    L  E  KEY   
Sbjct: 338 ALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDELMLAPERRKEYAQL 397

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+ SGQHLL+++N ILD+S++E+G +E+     +    +  C  +L L+A+E  IE+  +
Sbjct: 398 INDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARENGIELVTR 457

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               L  +  D +  +Q++LNL+SNA+KFT  GG V V     + R   + ++DNG GIA
Sbjct: 458 APEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAAVEAAR-LVLRVRDNGVGIA 516

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +   F Q     +   +G GLGL I +S++  HGG+  + S++  G  V   LP
Sbjct: 517 AEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTSEVDRGTIVTISLP 576

Query: 474 NTRVLN 479
                 
Sbjct: 577 LAPSAP 582


>gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 575

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TPL +I GFSE +          E   +++  I +    
Sbjct: 345 ELKRLEKMRKDFVANVSHELKTPLTSIRGFSETLLDGA--KEVPELRDQFLDIIQKEATR 402

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++L+LSR+E   +++   ++ L  +V E  ++L  +A +K+I++  K + ++  
Sbjct: 403 MQMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTVV- 461

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD   M+QVI+NL++NA+ ++  G RV + V   +   + + +KDNG GIAE E+  +
Sbjct: 462 LQADLNRMKQVIMNLVANAINYSPEGSRVEIAVEAKADSYK-LRVKDNGIGIAEKEVSRI 520

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + I+  H     + S+  +G       P 
Sbjct: 521 FERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFPR 574


>gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 758

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 12/312 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKDDLIA 226
            P    L  Q I S+ +  I     L   + F + + +    + ++ ILS  ++   L+ 
Sbjct: 303 LPDKAILQVQDIWSVLIEPIYFYDQLVGFVGFDSVLEHRKWSEEDIDILSLFSKNVALVL 362

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E + ++      +  AE  N+AKS FLA+MSHE+RTPLN I+G  +++ +  M    N+ 
Sbjct: 363 ERKKSEERLIAAKLEAESANIAKSEFLANMSHEIRTPLNGIMGMLQLMRMGEM----NQK 418

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E  G    S + L  L+ +ILD++RIE+G  ++ ++   L + +     + +  A +K
Sbjct: 419 QEEQCGFAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFKPAAIQK 478

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----G 400
           NI++  +I  ++   +  D   + Q+  NL+ NA+KFT   G V V              
Sbjct: 479 NIDLRVEIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDS-GFVLVEAYLLDRNQNGSYH 537

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D+G GI + ++ ++  SF Q   +     +G GLGL I + ++   GG   I S
Sbjct: 538 ILFSVSDSGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGTLSISS 597

Query: 461 KLREGVEVIAIL 472
           ++  G  +   L
Sbjct: 598 EINVGTSICFSL 609


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 3/230 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +      +E  KE    I+     +  
Sbjct: 365 RLDKLRKDFVANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRIGR 422

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG   L    + L+  +   I   Q  A+EK I++  +       +  
Sbjct: 423 LVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKNEDIQITM 482

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T   G V + V   SG G  I ++D+G GI E ++P V   
Sbjct: 483 DPDRIEQVLTNLIDNAIRHTDKNGMVKIIVER-SGDGVTIHVQDSGSGIPEEDLPFVFER 541

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   A      G GLGL IA++I+  H G   + SKL EG      LP
Sbjct: 542 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLP 591


>gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 899

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G+         
Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F +      +  QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715

Query: 464 EGVEVIAILPNTRVLN 479
            G      LP   V+ 
Sbjct: 716 TGTTFTFWLPLENVIQ 731


>gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 585

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 144/297 (48%), Gaps = 16/297 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           Y L  + +++    A++              +  R++AEE +  KS FLA++SHE+RTPL
Sbjct: 288 YPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPL 347

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF ++I        + E   +++ + H+   HLLN+IN+ILD+++IEAG+ EL  +
Sbjct: 348 NGMIGFLKLILEGM--ADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKMELVCA 405

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382
            I L ++  +    ++ +A+ KN+    ++ P      V  + + + QV+LN++ NA+KF
Sbjct: 406 PIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKF 465

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG + VT                    + I D G G++  +   +   F Q   +  
Sbjct: 466 THEGG-ITVTADVVLKKGKLQEQNFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRT 524

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+Q ++   GG+    S     G  V   +P  +    +  ++ ++
Sbjct: 525 RQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLYQQPVMLSSNDTDA 581


>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
 gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
          Length = 902

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL +L I+ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 147 VFISTLLLLFSLCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 200

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL++IN
Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIIN 316

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L + + E +I+L   A EK +E+  +++  +   V  D 
Sbjct: 317 DVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDS 376

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             ++QV+ NLL NA+KFT   G V + V   S   + I     I+D G GI+E +   + 
Sbjct: 377 MRLQQVMTNLLGNAIKFT-ENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLF 435

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I + ++    G     S+L  G      +
Sbjct: 436 QAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHI 486


>gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 875

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 210 SNVKILSCQAEKDDLIAELE----VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +   ++    E   L  ELE              +RA+  +  KS FLAS+SHELRTPLN
Sbjct: 585 TFASMVGLTIENVQLYNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPLN 644

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS V+  +T  PL   T +E +  I+R+G+ LL+LINE+LDL+RIEAG   L   +
Sbjct: 645 AIIGFSTVLLDDTEQPLT-PTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGS 703

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L  +  E    +Q   + + + +   +   L  V AD   +RQ++ NLLSNA+KFT  
Sbjct: 704 VDLCQVTAEVCDTVQTLLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTER 763

Query: 386 GGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            G + V+              R   +S+ D G GI       +   F Q     +S   G
Sbjct: 764 -GTITVSAQVLDEVNEDGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQIHG-RRSRLGG 821

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHEST 489
            GLGL I + ++   GG+  + S    G      LP  +      P++ + +T
Sbjct: 822 TGLGLAITRKLVEAQGGRIWVDSIPGIGSTFTFTLPVAQPAFTTEPDEANVTT 874


>gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 917

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 769

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   +EL  A S     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANSNYQAEKERAEAANKAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG   L   
Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   L ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 620 RIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTD 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V           ++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 679 NGGRIAVRTRRV-DGAVVVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ + HGG+  IRS+   G  +   +P
Sbjct: 738 SRSLTSLHGGRMKIRSREAVGTVISLRIP 766


>gi|5225252|gb|AAD40816.1|U59310_1 histidine kinase [Nectria haematococca mpVI]
          Length = 801

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 190 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 249

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 250 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTV 305

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 306 FDALKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 364

Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           T+     +             ++D G GIA+ ++  +  +F Q   ++     G GLGL 
Sbjct: 365 TIKERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLS 424

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++   GG   + S+  +G E    
Sbjct: 425 ISKRVVNLMGGDLWVISEQGKGSEFHFT 452


>gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 985

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 144/254 (56%), Gaps = 9/254 (3%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                    E  + AE  N AKS FL++MSH++RTP+NAI+GF+ +         + E  
Sbjct: 453 DRKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKERV 509

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL +++ +   ++  +   K 
Sbjct: 510 RDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIHAKQ 569

Query: 348 IEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----- 401
           +E++   +D +   V+ D+  + QV+LNLLSNA+KFT  GG V V +    G  +     
Sbjct: 570 LELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREYPGTQRGCELY 629

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KDNG G+++  +  + + F +   +  S  QG GLG+ I ++I+   GG   ++++
Sbjct: 630 EIRVKDNGIGMSQKFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTE 689

Query: 462 LREGVEVIAILPNT 475
             +G E I  LP  
Sbjct: 690 QGKGTEFIIRLPLR 703


>gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
 gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
          Length = 1128

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G +++  
Sbjct: 464 ALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 521

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   
Sbjct: 522 --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 579

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V+V 
Sbjct: 580 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSVSVK 638

Query: 395 WTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +   G         + + D G GI + ++  +  +F Q   +      G GLGL I++ 
Sbjct: 639 KSDKVGEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQ 698

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S+   G      
Sbjct: 699 LIHLMGGEIWVTSEYGSGSNFYFT 722


>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1877

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 14/334 (4%)

Query: 160  PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            P  +     P   A     +++          ML   L   +  +      + KI +  A
Sbjct: 1550 PSFLPHPLLPETRAEMATPLIAGS--------MLLGVLDVQSDQSNIFTDDDRKIQTTLA 1601

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +  +  +     +    T +R +E +  KS FLA+MSHELRTPLN+ILGF+EVI     
Sbjct: 1602 SQIAIALQNARLFAEQTATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGIN 1661

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            GP+ N+     +  IHR+G+HLLNLIN+ILD+++IE+G+  L      +++++ E    +
Sbjct: 1662 GPI-NDLIHNDLSIIHRNGRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTV 1720

Query: 340  QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               A +K++E+   I+P+L   V+AD   +RQV+LN++ NA+KFT   G V + +  T  
Sbjct: 1721 GPLATQKHLELLVDIEPNLKLPVYADRFRIRQVLLNIVGNALKFTEQ-GSVTIGIDTTP- 1778

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              + I I+D G GI      T+   F Q   +      G GLGLPI++ ++  HGG+  +
Sbjct: 1779 TTRMIKIQDTGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSM 1838

Query: 459  RS--KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             S     EG      LP     + +  +   + Q
Sbjct: 1839 VSSGNPGEGSLFTIELPINASEDEVNPNAAPANQ 1872


>gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 486

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 7/275 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             K L+       L   +    +       +AE  N+AKSRFLA MSHE+RTP+N  LG 
Sbjct: 73  EEKSLALFQANQVLEQRVSERTAELQAALVQAESANVAKSRFLAMMSHEIRTPMNGALGL 132

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E+++   +          Y+ +I  +G  LL+LIN+ILD S+IEA + EL     +   
Sbjct: 133 TELLKSTPLNN----EQAGYVDNILMAGNALLSLINDILDFSKIEAHQMELERIPFNPRQ 188

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +V++ + + + +AQ K + +   +D  +      D   +RQV +NL+ NA+KFT+  G V
Sbjct: 189 VVQDTLALFRTQAQAKGLVLHLDMDDHVPDHATGDPNRLRQVWMNLVGNALKFTSE-GEV 247

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +  T    +  S+KD G G++   +  +   F QG  +I     G GLGL I ++++
Sbjct: 248 RIALLCTPEGLRC-SVKDTGIGMSAEVMSQLFEPFKQGDSSISRKFGGTGLGLVICKALI 306

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
              G    ++S    G E    L    +    PE 
Sbjct: 307 DQMGADLQVQSTPGVGTEFSFTLSPAALGLSAPEA 341


>gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 1007

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E E       E + +AE+ +  KS FLA+MSHE+RTPLNAI+GFSE++      
Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E   +YI  I+ + + LL LIN+ILDLS++EAG  EL      L +        ++
Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
            R +  +I + +        V  D   + Q+I N ++NA+K+T+ G    + +G+     
Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G Y  +KD G GIA+ +   V   F +         QG GLGL I ++I    GG+    
Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S   EG    A LP       + E+  E  
Sbjct: 844 SVHNEGSLFWAFLPCEVDTLSMVEEKKEEN 873


>gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 950

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 19/274 (6%)

Query: 231 AKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +  S   +++  +E N AK+ F+A + HE+RTPLNA+ G + ++    +    N   +E
Sbjct: 268 KELESQMAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQEE 323

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  I  SG++LL +IN ILD S+IEA + EL E    L   + E + +   +A +K +E
Sbjct: 324 FVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLE 383

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------ 396
           +   I+P+   ++  D   +RQ++ NLL NAVKFT   G V V V               
Sbjct: 384 LAYLIEPNTPSAIVGDSTRLRQILANLLGNAVKFTEK-GEVVVYVSAQPLPNSDRTDKTL 442

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +      ++KD G GIA  +   +   F Q   +      G GLGL I+Q +    GG+ 
Sbjct: 443 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 502

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + S   +G      +      +  P  + +  Q
Sbjct: 503 WVHSTEGKGSTFYFTIQAQATPSSSPATSQQGQQ 536


>gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
 gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E E       E + +AE+ +  KS FLA+MSHE+RTPLNAI+GFSE++      
Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E   +YI  I+ + + LL LIN+ILDLS++EAG  EL      L +        ++
Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
            R +  +I + +        V  D   + Q+I N ++NA+K+T+ G    + +G+     
Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G Y  +KD G GIA+ +   V   F +         QG GLGL I ++I    GG+    
Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S   EG    A LP       + E+  E  
Sbjct: 844 SVHNEGSLFWAFLPCEVDTLSMVEEKKEEN 873


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 8/296 (2%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
               +     +   G +        + +  L K  +K+     ++       +  + ++ +
Sbjct: 759  FWDTWWFKVLVGLGFVLLVYGIVKWRSQQLIKDKLKLEQVVVQRT--FELAQQKEEIASQ 816

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              ++ +E +  KS F +++SHELRTPL  I+G +E I             + +   I  +
Sbjct: 817  A-EKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTTT----QSHSKSILSN 871

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q LL LIN++LD S++E+G+  L          ++  I   +L A +KNI +   +   
Sbjct: 872  AQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNIGLKLLLHQE 931

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
                  D   + +V  NLLSNA+KFT   G V + V         I + D G GI    +
Sbjct: 932  EIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEE-MVQIKVSDTGIGIPPQSL 990

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            P +   F Q   +     +G G+GL + + ++  HGG     S++ +G      LP
Sbjct: 991  PFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTTFFIQLP 1046


>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 769

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L ++++     Q E           +      ++ AE   LAK  FLA+MSHE+RTPL
Sbjct: 71  QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL  +
Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
             +L +++   I +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+KFT
Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242

Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V + +               ++D G GIA  +   +  SF Q   +      G G
Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
 gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 13/282 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   K   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGG------RVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           T  G        + ++     +   S     IS+KD G GIA+ +   +  +F Q   A 
Sbjct: 630 TEKGSVSLHFDSIEISNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGAT 689

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                G GLGL I +      GG   + S +  G      +P
Sbjct: 690 IRKYGGTGLGLSICKEFARLLGGWITLESHVGAGSTFTVYIP 731


>gi|170708012|ref|ZP_02898461.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
 gi|170127172|gb|EDS96050.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 TEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 637

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +V E   + +L+
Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +++          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 374 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486

Query: 463 REGVEVIAILPNTRVLNFI 481
            +G   I  LPN +V   +
Sbjct: 487 GQGSTFILYLPNRQVQEVV 505


>gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 775

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/269 (40%), Positives = 149/269 (55%), Gaps = 2/269 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + V +   QA  +    EL        E + RAE+ N  KS+FLA+MSHELRTPLN
Sbjct: 496 RLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRAEDANQTKSKFLANMSHELRTPLN 555

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++     G L +E Y+EY  DI  SG +LL +IN+ILD+S+IEAGR +L    
Sbjct: 556 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEP 615

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L   + E + ++  RA  K + +   ID  +  V AD + ++Q+++NLLSNAVKFT  
Sbjct: 616 FDLATTLSESLRVVSGRADNKQLMLRADIDNDIP-VLADRRAIKQILVNLLSNAVKFTPD 674

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV V  G        + I D G GIA+  +  +   F Q    +     G GLGL IA
Sbjct: 675 GGRVTVR-GRVFEEQIVLLIADTGIGIAKQSLRRLGQPFEQVESQLTKTYHGSGLGLAIA 733

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +S+   HGG   +RS+L  G  V   LP 
Sbjct: 734 KSLTNLHGGSMRLRSQLGVGTVVRVALPR 762


>gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata]
          Length = 547

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 11/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  ++  +F +     +     +D+    E A+   +   ++AEE N AKS FLA+MSH
Sbjct: 2   FWARVSARVFATPDHRNAVLGVLEDITPSYE-ARQAIEHAHQQAEEANRAKSSFLANMSH 60

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G S +++   +    NE  + Y+  I  S QHLL +IN+ILD S+IEAG+
Sbjct: 61  EIRTPMNAIMGMSYLVQKTEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGK 116

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +      L  ++     ++  +A  K +E+   +D  +   +  D   + Q+++N  +
Sbjct: 117 LGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYAN 176

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + + V            + +++D G GI+E +   +  SF Q   +   
Sbjct: 177 NAVKFTER-GEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTR 235

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I++ +     G+  + S   +G      
Sbjct: 236 KFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 273


>gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1]
          Length = 939

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 21/366 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALS 198
           Y SATL      + L+ F L         P+  ++ +   I   H        +     +
Sbjct: 175 YLSATLGTFFIFNLLAIFALLNVTASLLRPIEKISDTVNKITQGHFGATKGLNLPTQYST 234

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSR 251
             + +     +         +  D    ++       +E         K A E N  KS+
Sbjct: 235 VVSDLNDISSRLENHRAEILSNVDQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQ 294

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHE+RTPLNAI+G+ ++++ + +    ++  + Y+  I +S  +LL +I++ILD 
Sbjct: 295 FLANISHEIRTPLNAIMGYIQILQKDQL----DKQQRLYMDTIAQSTTNLLTIISDILDF 350

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQ---LRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           S+IEAG+  L  + I++ DIV E   +L    L    K +++  + D  +   V  D   
Sbjct: 351 SKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVR 410

Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +RQV+ NL+ NA+KFT  G     V +     S       I D G GI E ++  +   F
Sbjct: 411 IRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPF 470

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIP 482
            Q   +      G GLGL I + ++   GG   + S+   G       +L  ++    + 
Sbjct: 471 SQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNFRFTIVLKPSQKEQKVE 530

Query: 483 EDNHES 488
           +   +S
Sbjct: 531 DPISKS 536


>gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 631

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+      +E R +AEE N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 387 IHILKKTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQ----VEDK 442

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY   I  +   LL LI++ILD+S+IE+G Y+   +   +  ++ E   + +LR +
Sbjct: 443 EEMKEYADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIK 502

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            + + +          ++ D+  + QVI+NLL+NA+KFT  GG + +          Y  
Sbjct: 503 SEELVLTFDEQLPQCILYTDKNRLTQVIINLLTNAIKFT-SGGEIRMGYRLKDAATLYFY 561

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +         QG GLGL I++ I+   GG+  + S++ +
Sbjct: 562 VSDTGCGMSTEQCEHVFERFVK----YNPFIQGTGLGLSISRMIIEKLGGEIGVTSEVGK 617

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 618 GSLFWFTLP 626


>gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 785

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTPLN+ILGF+E++  E +     E+ +E+ G I RSG+ LL LIN+I
Sbjct: 554 KAAFLANMSHEIRTPLNSILGFAELL-DEQLAASGQESLREFTGIIQRSGRRLLRLINDI 612

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LSR+EA R  L     +L  IV+E +  L+  A +K + +    +  +  V  D   +
Sbjct: 613 LELSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEA-VPPVLGDPHRL 671

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425
            Q++ NL+ NA+K+T   G V V V  T+  G     + + D GPGI    +P +   F 
Sbjct: 672 HQIVTNLVGNALKYTEQ-GEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQ 730

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +     +G GLGL I + ++    G+  + S    G       P 
Sbjct: 731 RA-PSENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFPA 778


>gi|254444196|ref|ZP_05057672.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198258504|gb|EDY82812.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1220

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 19/328 (5%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             + +     +   +       +L   L        HL K   +    + +       L  
Sbjct: 740  SIPIGIAPALYRTLPAYMAYVVLGGVLISLILKFRHL-KLLNRQRQLEEKVILQTKALRE 798

Query: 231  AKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
                           +KRAE  N AKS FLA +SHE+RTP+N I+G ++ +    +    
Sbjct: 799  KNIQLHGAFLSERGLKKRAERANQAKSEFLAMVSHEIRTPMNCIIGMTDNLLATPL---- 854

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
             +   E +  +H SGQ L+ +I++ILD S+IEAG+ EL     S    V++   +     
Sbjct: 855  QKEQFEMLQAVHASGQSLVAIISDILDFSKIEAGKIELDSVPFSPEQTVKDVFNLFVRSC 914

Query: 344  QEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401
             EKNI +   I   +  +   D   ++QV++NL+ NA KFT  G   + +          
Sbjct: 915  DEKNISLRTDISDEVPDIAIGDPIRLKQVLINLVGNARKFTDQGLITISLNQQINDDGSL 974

Query: 402  YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +  ++ D G GI    +  +  +F Q   +      G GLGL I + ++    G   + 
Sbjct: 975  TLIYTVTDTGIGIESANMDLLFKAFSQIDSSNTRKFGGTGLGLAICKRLVNLMNGDIGVS 1034

Query: 460  SKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S+   G      +   +     P++  +
Sbjct: 1035 SQTGHGSTFSFTI---KTRKATPQETQQ 1059


>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1070

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 5/255 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R++AE+ +  KS FLA+MSHELRTPLNAILG+SE+++ +       
Sbjct: 544 ITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQ 603

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +  IH +G+HLL LIN++LD+S+IEAG+ ++    +++  +VR+    +    +
Sbjct: 604 EMVGD-LAKIHSAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLVR 662

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           +       +   +L ++  D   +RQ++ NLL+NA KFT   G + + V     R     
Sbjct: 663 KNKNHFHLECGQNLGAMHTDLTKVRQILFNLLNNAAKFT-QNGSITLRVQCQEDREIPTI 721

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G GI +  + ++  SF Q  ++I     G GLGL I+QS     GG     SK
Sbjct: 722 SFQVIDTGIGIEQQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSK 781

Query: 462 LREGVEVIAILPNTR 476
              G      LP  R
Sbjct: 782 PGAGSTFCLTLPLIR 796


>gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
          Length = 917

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 896

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia]
          Length = 917

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 161/373 (43%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALS---------ISALSNFMLPYAVFLSFFP 169
           L W  + L   GT    Y +++ S  L+             +S   N  +          
Sbjct: 149 LGWVEIELSHDGTLLRGYRSLFTSMLLIFCGLAATALLALRMSRTINDPIGQIKHAVTQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L  +  +        LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGNLEERLPVMGSYEMDELAAGINRMAETLHNAHEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSASSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V   +            I +
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICV 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 QDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            +      LP  R
Sbjct: 502 SQFWVSLRLPKAR 514


>gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +++  + +++AEE +  KS F+A+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 380 ITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL----PYMEDA 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + YI  I+ + + LLN+INE+LDLS+IEAG  EL+    SL +++ E     +    
Sbjct: 436 KEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVP 495

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + + ++   S   +  D   ++Q++ NLLSNA+K T   G V V+          IS
Sbjct: 496 E-GVTLKKRYPASPCLIEQDSMRIKQILSNLLSNALKNTTQ-GYVEVSYETEQSG-VKIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + ++  +   F +    I    QG GLGL I +SI+    G   + S L E
Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKADSYI----QGAGLGLSICKSIIEQMNGTIEVASVLGE 608

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 609 GSTFTVTFP 617


>gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 815

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E R RA   N AKS FLA+MSHE+RTP+N ILG + V+  + +     +     +  I
Sbjct: 410 LIEARDRANAANRAKSDFLANMSHEIRTPMNGILGMARVLADKDL----PDDVNSKLDVI 465

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK- 353
            RSG  L++L+++ILDLS+IEAG+ EL E+   L  I      + +  A +K + +  + 
Sbjct: 466 VRSGDTLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEV 525

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNG 409
            D    S   D   + Q+  NL++NA+KFTA  G+V +T+G T+         + + D G
Sbjct: 526 TDRDGVSRHGDPLRLSQIANNLVANAIKFTAS-GKVRMTLGPTADGPDSDMIELVVSDTG 584

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++E +  ++   F Q   +      G GLGL I + +    GG   + S   +G    
Sbjct: 585 IGMSEAQCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTFT 644

Query: 470 AILPNTRVL 478
             LP   V+
Sbjct: 645 VRLPLAPVI 653


>gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 446

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI----LSCQAEKDDLI---A 226
           ++ + +       +  + + +  L+        LF++ +K        +   + LI    
Sbjct: 92  IAVELMKIGATDYLLRSQLFSENLTRILRNAIKLFQAEIKADLAYQQLKESHEQLICKNQ 151

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE  +        R  E +  K++FLA++SHE RTP+NAI+GFS+++     G LN++ 
Sbjct: 152 ELERQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQLNSQQ 211

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  +G+HLL L+NE+LD S++E+GR EL    + L  IV   +  +   A+ K
Sbjct: 212 V-DMVERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAK 270

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + +  + D   + ++ D   +RQ+++NLL+NAVKFT  GG + V V   +     I+I+
Sbjct: 271 KLSLVVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGG-IWVEVKEITQNRLTITIR 329

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+  +   +  +F Q    I     G GLGL I  S++   GG+  + SKL  G 
Sbjct: 330 DTGIGISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGVGS 389

Query: 467 EVIAILPNT 475
                LP  
Sbjct: 390 IFKIELPRQ 398


>gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
 gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
          Length = 640

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 166/330 (50%), Gaps = 14/330 (4%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           + + +L   +      +VV++   + ++  +  +     +     +   +      SN +
Sbjct: 318 IKHIILWVGLVAFLMALVVSVIINSTITRPIKKLKKGVEMMGKGDYNFRVN---INSNDE 374

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNA 266
                   + +  E++ ++    +  ++ E       + +  KS  ++ +SHELRTPL +
Sbjct: 375 FEELAHAFNKMADEIKSSQEKLKKQAEKLEISYNELKKLDKFKSEIISIVSHELRTPLTS 434

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G+ E++   TMG + NE+ K  +   + +   L  LI+ +LDLS+IE G  ++  S +
Sbjct: 435 IKGYVELVLDGTMGTI-NESQKRCLEIANENIDRLKRLIDNMLDLSKIERGELKMDISKV 493

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +L DIV+  +  L+  A  KNI+I  K++P  +++  D+  +  V+ NL+ NA+KF+ + 
Sbjct: 494 NLNDIVQNVVHSLKPLADGKNIKIINKVEPITANL--DKDKITGVLTNLIENAIKFSPVN 551

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             V +   +      +I++KDNGPGI + E+  +   F Q + + K  + G GLGL I +
Sbjct: 552 ENVTIEA-FKENNMVHITVKDNGPGIPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICK 610

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           SI+ +HGG+  + SK  +      +LP  +
Sbjct: 611 SIVESHGGKIWVESKFGKESTFHILLPLDK 640


>gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 589

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
              +  L +  F+A++SHELRTPL +I GF E +   T+G   ++  + Y+  IH+    
Sbjct: 354 ELRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGE--SQARERYLKVIHQETLR 411

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LINE+LDL++IE+G+     + I +  +V   I+ L+ + +   I +  ++   L  
Sbjct: 412 LNRLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPL 471

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  +E  + QV+ NLL NAV+++  G  V V           + + D GPGI   ++P +
Sbjct: 472 MLGNEDRIEQVLTNLLENAVRYSPPGSTVTVRAA-GREGKITVEVADRGPGIPPEDLPHI 530

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   +   +  G GLGL I + I+  HGGQ  ++S+  +G      L
Sbjct: 531 WERFHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQGSVFSFTL 582


>gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
 gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
          Length = 752

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 162/423 (38%), Gaps = 17/423 (4%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
            +          + + LA+ +  L   ++ +       E    R W L            
Sbjct: 55  AFAIGVSFLFALACVALAILSMRLRWMRRKLRKISLHNETLADRNWELKE--------AE 106

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAIMS 181
                      + + +  +  L+ +++ +         A  L   F   V+     AI S
Sbjct: 107 ERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQGESAIES 166

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                       A    +  +    +          Q    D+    E  +    E R  
Sbjct: 167 NGTRIHDQRVETALGPRWIAWREGLVRIDANHPAELQCVGRDVTNRTET-EYALGEARDH 225

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A   N AKSRFLA  SHE+RTPLN I+G S ++   ++ P        Y+  +  SG  L
Sbjct: 226 ANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDTSLTP----EQTTYVKAVKASGDAL 281

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L+LI E+LD SRIEAG+ +L      L D++ +   +L  RAQ + +EI   ID  L   
Sbjct: 282 LSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQLEIAAYIDEQLPIE 341

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   +RQ++LNL  NA+KFT  GG   +    T        ++D G GI       V
Sbjct: 342 VIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQDTGIGITPDAQARV 401

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q    I     G GLGL I+  I+   GG+  + SK   G      +P     + 
Sbjct: 402 FREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGSTFEVSIPL-PAHDS 460

Query: 481 IPE 483
            PE
Sbjct: 461 PPE 463


>gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division
           OP8 bacterium]
          Length = 350

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/320 (33%), Positives = 163/320 (50%), Gaps = 18/320 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F    A  L    +    +    +++    +        A +   Y+     +  +  L+
Sbjct: 40  FFAVGAGLLCTLAIFQKTAMGEDVALLRGYVLPFFFGGGAAALVGYLNRRSRRHLMARLN 99

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            QAE+D L++                   + AKS  +A+MSHELRTPLNAILGFS  I+ 
Sbjct: 100 AQAERDILLS------------------ASRAKSEVIANMSHELRTPLNAILGFSSAIKC 141

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           ET GP+ +  Y+EYI DI  SG HLL+LIN+ILD+S IEAG+  L E +I++  I +E  
Sbjct: 142 ETFGPMGHTKYREYIDDISHSGSHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAF 201

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            +++  A E  + +   I  +L  ++ DE+  +Q++LNL SNA+KFT  GG V + +   
Sbjct: 202 HVVECLAVENQVMLAYDIAENLPPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLD 261

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 +S+ D G G++  E+   LT FGQ +  +     G GLGLP+ + ++  H G  
Sbjct: 262 DQGRHTLSVTDTGIGMSADELKNALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTL 321

Query: 457 LIRSKLREGVEVIAILPNTR 476
            I S    G  V  + P TR
Sbjct: 322 DITSTKGTGTIVTVVFPATR 341


>gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 579

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 436 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYSLEDE 494

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 550

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 143/257 (55%), Gaps = 13/257 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           DD+  E E A       R  AE  + AKS+F+ASMSHE+RTP+N ILG +E++    +G 
Sbjct: 571 DDVTDERERALQ-LQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELL----LGT 625

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  + +   ++RSG++LL +IN++LD S+IEAGR EL+ +  +L  ++ + + +L  
Sbjct: 626 RLDDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAP 685

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
           RA EK +E+  +    + + V AD   +RQV+ NL++NAVKFT   G V V + +     
Sbjct: 686 RAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFT-EHGEVTVDLRFLPRPR 744

Query: 397 --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +       ++D G G+A   +P + T+F Q    +     G GLGL I++ ++   GG
Sbjct: 745 AGAPAMLEFRVRDTGIGMAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGG 804

Query: 455 QFLIRSKLREGVEVIAI 471
           Q  + S+   G E    
Sbjct: 805 QIDVVSQPGVGSEFRFT 821


>gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 882

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 882

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 882

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 882

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   +   +   +  ++    +K+D + + + A++   + +++AEE +  KS FLA+MSH
Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS ++        N E  +EYI  I+ +   LL LIN+ILDL++IEAG 
Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E  +S + +  +  +     +L+AQ+     F +  P+   +  D   + QVI N ++N
Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  G    +          Y  +KD G GIA+ +I  V T F +      S  QG 
Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           GLGL I Q I+   GG   + S+  +G      LP + + +  +P +  ++
Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757


>gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1575

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 34/297 (11%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +    +  + +L   +E   +      A+      ++ AE  N +KS FLA+MSHELRTP
Sbjct: 1045 SKTWNQEEINLLQLVSELIAIGRSRHKAEEALRIAKETAETANRSKSAFLANMSHELRTP 1104

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LNAILGF++++E        N+  ++ +  I+RSG+HLLNLIN++L++S+IEAGR  L+ 
Sbjct: 1105 LNAILGFAQLMER---DTTLNKRQRDSLATINRSGEHLLNLINDVLEMSKIEAGRIVLNP 1161

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
            ++  L  +++E   M Q+RA++K + +  ++ P+L   +  DE  +RQV++NLL NA+KF
Sbjct: 1162 TSFDLHRLLQEMQQMFQVRAKDKKLSLSFELAPNLHQYILTDESKLRQVLINLLGNAIKF 1221

Query: 383  TAIGG---RVHVTVGWTSGRGQY--------------------------ISIKDNGPGIA 413
            T  GG   RV + +G    RG+                             I+D G GI 
Sbjct: 1222 TNTGGVTLRVSLGIGEQGSRGEVALSLSPLPLCPSAPLPLVPNSQSLISFKIEDTGLGIP 1281

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              E+  +   F Q + A +   +G GLGL I++  +   GG   + S +  G     
Sbjct: 1282 TEELDNLFQPFVQTASARQ-VMEGTGLGLTISRQFVQLMGGDIRVHSVVGSGSTFYF 1337


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +   +A++SHELRTPL +I GF E I   T+   + E  + Y+  IH+    L  LI E+
Sbjct: 362 RRDLVANVSHELRTPLTSIRGFIEAILDGTIS--DPEAQRHYLKVIHQETVRLTRLIREL 419

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL+++EAG+       I + ++V   +  L  + ++  I +   I  SL  + A+E  M
Sbjct: 420 LDLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRM 479

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NL+ NA++++  G  V V  G +      I + D GPGI E ++P +   F +  
Sbjct: 480 EQVLTNLVENAIRYSPPGKTVTVKAG-SDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVE 538

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +  G GLGL I + I+  HGG+  + S+  +G      +P 
Sbjct: 539 KSRSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPA 584


>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1022

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            +D+ R+ AE  +LAKS FLA MSHE+RTPLNA++G +E+   E M    N+  K+ I  
Sbjct: 335 EADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKM----NQNLKKIIET 390

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I      L+ L+N ILD S+IEA + EL E    L  ++ +    + L A +K +E    
Sbjct: 391 ITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKKGLEFILH 450

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409
           I+P +   V  D   +RQV+ NL+ NA+KFT+ G    +  +             I+D G
Sbjct: 451 INPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVKAELETRTDEKAIIKFHIQDTG 510

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E +   +  +F Q   +      G GLG  I++ I+   GG+  + S+   G    
Sbjct: 511 IGIPEEKRGLIFEAFTQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESREGCGSIFW 570

Query: 470 AILPNT-----RVLNFIPEDN 485
             +        RV    PE +
Sbjct: 571 FTVVLALQQVKRVPVISPEYD 591


>gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 1043

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 9/277 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
             T I              +   ++L  E+    S   E R RA      KS FLA+MSH
Sbjct: 268 LVTSIKEMAASLRQSYSRLEEHGNELEHEVARRTSQLAEARDRALAAAQVKSDFLANMSH 327

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NA++G S +   +          ++Y+  I  + + LL +IN+ILD S+IEAG+
Sbjct: 328 EIRTPMNAVIGLSHLAREQAESH----QQQDYLNKILAASKSLLIIINDILDFSKIEAGK 383

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             +        D ++    +  L A  K ++    + P L  +  D   + QV+LNL++N
Sbjct: 384 MHMETVVFDFDDTLKNIAGVGGLEAGRKGLDFLFDVPPQLPKLRGDPVRLGQVLLNLVNN 443

Query: 379 AVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT+  G V VTV              S+ D G G+++ ++  +  +F Q   +I   
Sbjct: 444 AIKFTSR-GEVIVTVKILAMDEHETELSFSVSDTGIGMSQEQLAGIFDAFSQADTSITRK 502

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             G GLGL I + +++   G+  + S   EG      
Sbjct: 503 FGGTGLGLAICKQLVSMMQGEIGVESTPGEGSRFYFT 539


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS+FLA+MSHE+RTP+N ++GF++++    + P      ++++  I  SG  LL++I++I
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367
            L+ S++EAG  EL E+ I +   + E +  L  +  EK IE+   IDP++ SV   D   
Sbjct: 875  LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR--GQYISIKDNGPGIAEGEIPTV 420
            + Q++LNLLSNAVKFT   G V + V       T       + S++D G GI + +   +
Sbjct: 935  LHQILLNLLSNAVKFTEE-GEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRL 993

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              SF Q   +      G GLGL I+Q +    GG+  + S + EG      +      + 
Sbjct: 994  FESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEEAEDG 1053

Query: 481  IPEDNH 486
               D +
Sbjct: 1054 AQTDKN 1059


>gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 437

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 150/304 (49%), Gaps = 5/304 (1%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           +  L      +  + D  LA +   A               +     +AE+  +  EL  
Sbjct: 126 IGTLCLGDRQARTLSDAELATLQELAEVVVDEFELRRANQRLDEERARAERSAI--ELRR 183

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                 + R+ AE  N AKS+FL+SMSHELRTPLNA+LGF++++E +   PL+ E    Y
Sbjct: 184 INLELQQAREEAERGNRAKSQFLSSMSHELRTPLNAVLGFAQILEQDPREPLS-ERQAGY 242

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I   G+HLL+LI++ILDLSR+EAGR EL    ++   +V +C  +L   A +  + +
Sbjct: 243 VDQILGGGRHLLSLIDDILDLSRVEAGRVELKPEWVAPGLLVDQCAELLGPMATDAGVHL 302

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +  ++ + +W D + +RQV+ NL SNAVK+    GRV V V   +       ++D G
Sbjct: 303 SVYVAEAVPASIWVDPRRIRQVLFNLASNAVKYNRPDGRVEVEVEAPAPDRIRFRVRDTG 362

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E     V   F +  +   S  +G G+GL + + ++   GG+    S    G    
Sbjct: 363 IGIREERQREVFYPFNRLGL-ESSEVEGTGIGLVVTRRLVEQMGGEIGFSSAPGVGSVFW 421

Query: 470 AILP 473
             LP
Sbjct: 422 VDLP 425


>gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
 gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
          Length = 896

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 631

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L   A     I  L  A +   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS +
Sbjct: 377 LLILIAAIAYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +        + +  +EY   I  +   LL LIN+ILD+S+IEAG ++   S I +   + 
Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E    ++LR +++ + +         +++ D+  + Q+I N + NA+KFT   G + +  
Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFT-QIGSIRMGY 551

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      + D G G++E +   V   F +         QG GLGL I Q I+   G
Sbjct: 552 RLKDADTICFYVSDTGCGMSEEQCRHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   + S+  +G      LP
Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627


>gi|330446361|ref|ZP_08310013.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490552|dbj|GAA04510.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 971

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/383 (28%), Positives = 174/383 (45%), Gaps = 29/383 (7%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL-----SFFPVVVALSTQAIMS 181
           V+          I  SA  L+AL +             +     +   +        I  
Sbjct: 328 VDHTLTLARNTLIVISAIGLMALVLIMWRFVYARVICRINEYSRALSALTRGDLGVRINV 387

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSN----VKILSCQAEKDDLIA----ELEVAKS 233
               +++  G             Y L ++      ++   +A  + L+A    ELE   S
Sbjct: 388 RGDDELAQMGRAILVARDTANERYRLAQAESKARQELQQHKASLERLVAKRTGELEKINS 447

Query: 234 LSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +E        R  AE+ N AKS FLA+MSHE+RTP+N +LG + ++    + P     
Sbjct: 448 RLNEEVYNHYKARDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQLTP----Q 503

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K Y+  I+RSG+ LL+++N+ILD S+IEAG  ++  S  S+  +V +   ML+ RA  K
Sbjct: 504 QKRYLDVINRSGETLLDILNDILDYSKIEAGHLDIRPSDFSVSRMVTDVANMLEGRALAK 563

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYI 403
            I +   I P +  +W  DE  +RQV++NL+ NA+KFT   G+V +TV            
Sbjct: 564 RIGLEYHIAPEVEGMWYGDESRIRQVLVNLVGNAIKFT-DNGKVSITVEPHPDMPDELLF 622

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G GI E E   +  +F Q     KS  +G GLGL I++ I+A   G+  + S + 
Sbjct: 623 SVRDTGIGIDEEEQNLLFNAFKQAEAGRKS-IEGTGLGLAISKHIVAAMDGEIGLDSVVG 681

Query: 464 EGVEVIAILPNTRVLNFIPEDNH 486
           EG      LP       +  D+ 
Sbjct: 682 EGSCFWFALPLEHGEGTLESDDQ 704


>gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 1003

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/318 (31%), Positives = 149/318 (46%), Gaps = 31/318 (9%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +T  L +++           + I++ + A+      +  AE+ N+AKS FLASM HELRT
Sbjct: 682 LTVSLLRNSDGTPRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHELRT 741

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNA++GFSEV+  +  GPL N    EY+ DI  SG+HLL LIN+ILDLS++EAG     
Sbjct: 742 PLNAVIGFSEVLLDQFFGPL-NPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWMRFL 800

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAV 380
                L  ++ E +  +    +EK I + + +    S +   +D   ++Q+  +LLSNA 
Sbjct: 801 PVPTPLDSVMGESLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLSNAA 860

Query: 381 KFTAIGGRVHVTVGWTSG--------------------------RGQYISIKDNGPGIAE 414
           KFT  GG + +T    S                            G  I I+D G G+  
Sbjct: 861 KFTPKGGTITITGKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTS 920

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           G    +  SF Q    I     G GLGL +A+  +  H G+  + S  L +G      +P
Sbjct: 921 GHSDKIFESFFQVEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYFTIP 980

Query: 474 NTRVLNFI-PEDNHESTQ 490
                  + PE+    TQ
Sbjct: 981 LALDEESLHPEEQLSKTQ 998


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + EL+ A    +  + +AE  +  KS FLA+MSHE+RTPLN I+G  +++E ET    
Sbjct: 244 RDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESET---- 299

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EY+    ++ + L N++++ILDL+R+EAG+  L     +  D ++    + ++ 
Sbjct: 300 QTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVT 359

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           ++   + +  K+ P L  +V  D   ++Q++ N++ NA+KFT   G V +T         
Sbjct: 360 SRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKFTHE-GHVLITAQLLPRSTP 418

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +++D G GIA+ ++  +  SF Q S       QG GLGL I + +    GG  
Sbjct: 419 GNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTI 478

Query: 457 LIRSKLREGVEVIAILP 473
            + S + +G      +P
Sbjct: 479 AVESNVEQGTTFYISIP 495


>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 22/312 (7%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---------- 248
            +  +           +  +    DL A    A+  +D  R +A E + A          
Sbjct: 138 LYELLEERANHLEKAQVELRKYATDLEAAKRQAEDQADLLRAQARELSKAREAAEKAAAI 197

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S FLA+MSHE+RTP+N ++G +E++    +G    E  +EY+  I  SG+ LL LIN I
Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELG----EEQREYVDTIRNSGEALLGLINNI 253

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDLS++EAG+  L         ++ + + +L  +A EK IE+    +  +   +  D   
Sbjct: 254 LDLSKLEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSR 313

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+LNL+ NA+KFT   G V + V      +S      S++D G GI E +   +   
Sbjct: 314 LRQVLLNLVGNALKFT-ANGTVRLRVTLMNTSSSEAVLRFSVRDTGVGIDEEQQKRLFKP 372

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q   A+     G GLGL I+Q I    GGQ L+ S+  +G E    L     L    E
Sbjct: 373 FSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLESERDKGSEFSFAL--RFKLPEKDE 430

Query: 484 DNHESTQYKCYA 495
           +  E+ + +  A
Sbjct: 431 EVSEAPKEEIRA 442


>gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 682

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILSCQAEKDDLIA 226
           +V + TQ  +   +  + + G++         +       L    +++     E+   + 
Sbjct: 277 LVGIVTQTGLLRLLDPLEIFGVIEALQRSVHQLEAEKMELLQGRTLQLERLVEERTAQVQ 336

Query: 227 ELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           E       A++ ++  R+ AEE N  K  FLA++SHELRTPLN I+GF++++     G L
Sbjct: 337 EQARREQLARAAAESARQEAEEANRIKDEFLATLSHELRTPLNPIIGFTQLLRK---GQL 393

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +  +    +  I R+ +    +I ++LDLSRI  G+  L    ++L  +V + +  ++  
Sbjct: 394 DEASAARALETIERNARAQSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFA 453

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           AQ KNIE+  ++DP++   + D   +RQV+ NLLSNA+KFT   G + V +         
Sbjct: 454 AQSKNIELRARLDPNVVLPFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLER-GRAEAV 512

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D+G GIA   +P V   F Q +     +  G+GLGL I + ++  HGG   + S  
Sbjct: 513 LTVRDSGVGIAGDFLPHVFERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVES-P 571

Query: 463 R--EGVEVIAILPN 474
              +G      LP 
Sbjct: 572 GSDQGATFTVRLPL 585


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 10/269 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I+  +   + ++  LE  +    + R  A E    K  F AS+SHELRTPLN ++G  E
Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLE 296

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    + P      +EY+     SG+ LL+LI  ILD SRIE+G+++L      L + +
Sbjct: 297 LLSNTELTP----NQREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETL 352

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + I +L  +AQ K++EI   +  ++   +  D   +RQ+++NL+ NAVKFT   G V +
Sbjct: 353 DDVIGLLAAQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQ-GEVSI 411

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V     +      +  ++D G GI    +  V  +F Q   +      G GLGL I + 
Sbjct: 412 EVRLLEKKAKKLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++   GG   + + L +G      +P   
Sbjct: 472 LVDLMGGDLGVENNLDKGSLFWFTVPLEE 500


>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 166/352 (47%), Gaps = 11/352 (3%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           ++        + I      + A +  A+   ++  A       V+  ++ +A     V  
Sbjct: 257 LDRDAPAYMTIFIGMPEAAIGADARKAMGTGLVLSACAAVLALVMAWVAERAFFMPRVRA 316

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           + +A        + T    +     + +L+  +  D +  E +VA       +  AE+ +
Sbjct: 317 LVMAAERFRIGDYGTPTGVNHDAGELGLLA--SALDRMAQERQVAVDALRAAKDAAEDAS 374

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +KS FLA+MSHE+RTPLN +LG  +++E        +   +EY+    RS   L  L++
Sbjct: 375 RSKSEFLANMSHEIRTPLNGVLGMLQLLESGR----PSAEQREYVETAIRSTNRLTRLLS 430

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILDLSRIE+ +  + E + ++ D+ +  + + +  A+EK + +  ++DP +   ++ DE
Sbjct: 431 DILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKGVRLEVRVDPRIPAHLFGDE 490

Query: 366 KGMRQVILNLLSNAVKFTAIGGR----VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             +RQ++ NL+ NAVKFT  G      V V+    S      +++D+G GI    +  + 
Sbjct: 491 ARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIRFTVQDSGVGIPSERLKDIF 550

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F Q   +   + QG GLGL I + ++    GQ  I+S   EG  V   LP
Sbjct: 551 EPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQGEGTLVGVTLP 602


>gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 695

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 12/243 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  E +  KS FL+ +SHELRTPL +I+G++E++      P      +E++  ++    H
Sbjct: 451 REREADRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSP---AERREFVQTVYNEANH 507

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  ++ ++L ++R+EAG   L++ A+SL  IV +    L  +   K+  +   I P L  
Sbjct: 508 LYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTML-IDIPPHLPP 566

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------WTSGRGQYISIKDNGPGI 412
           V+AD   +RQV++NL++NAVK++  GG + +T+            G+   +++ D G GI
Sbjct: 567 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGI 626

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A  ++P +   F +          G GLGL IA++++  HGG+    SKL +G      L
Sbjct: 627 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNKGSTFYFTL 686

Query: 473 PNT 475
           P  
Sbjct: 687 PVA 689


>gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 818

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 12/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +S   E +K AEE + AK  FLA+MSHE+RTP+NAILG S ++   T     N
Sbjct: 296 ITGQKRLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTKTT----QN 351

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I +S ++L+ +IN+ILDL++IEAG+ ++     +L D++++   +L+ + +
Sbjct: 352 SQQRTYTEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEGVLRYKTE 411

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E        +  V   D   + QV+LNL+ NA+KFT  GG + V       +    
Sbjct: 412 EKGLEFDATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEKGG-IEVWCKLVDQQKDVN 470

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++KD G G+    +  + T+F Q   +I     G GLGL I++ ++   GG+  + 
Sbjct: 471 EIQFTVKDTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMGGKIHVE 530

Query: 460 SKLREGVE--VIAILPNTRVLNFI 481
           S    G       +LP  ++ +  
Sbjct: 531 STKGLGTVISFTLLLPTGKIESVS 554


>gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 896

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 675

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 19/274 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +  +    ++R  AE  N  KS FLA+MSHE+RTPLN ++G  +++        
Sbjct: 267 EDITEQKNYEEALQKSRDEAESANRVKSEFLANMSHEIRTPLNGLVGMMDLLSRT----D 322

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  +E I     S   L  +I+ ILD SRIEAG+  +++ +  L  ++ E I +  + 
Sbjct: 323 PDEEQQECIRMAKFSANTLFKVIDGILDFSRIEAGKIAIAKISFDLKALLEEVIKIHTVL 382

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A++K + +   I P L   +  D   +RQ++ NL+ NA+KFT   G++ V+V     +GQ
Sbjct: 383 AEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLIGNALKFTDR-GQIKVSVREIRHQGQ 441

Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     + D+G GI+ G++  +   F Q   ++     G GLGL I + +    GG   
Sbjct: 442 QVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTRRYSGTGLGLAICKQLAELMGGAIR 501

Query: 458 IRSKLREGVEVIAIL---------PNTRVLNFIP 482
             S++ +G      L         P  R     P
Sbjct: 502 AESEMGKGSVFRFTLVFTAAPGPGPAEREQALSP 535


>gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E   + I  +  SG HLL+L+N+ILD S+IE  + EL+ ++    D++         
Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396
             ++K ++     + +  +++  D+  +RQ+I NL+SNAVKFT   G + +    T+   
Sbjct: 500 ICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTPK 558

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I ++D G GI +  +  +   F Q   +      G GLGL I + +     G  
Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLTIVKQLTDTMKGYI 618

Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490
            + S   +G     +LP            + +P D ++ T+
Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659


>gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519]
 gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii]
          Length = 965

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             ++   L   +++   L  S   I+  + E    I   E  +    + +K A+E N  K
Sbjct: 269 GPIIRLILIIGSFVAAILGVSFYWIIRLRKE----IRVREQIQKDLKKAKKEADEANEFK 324

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S F+A MSHE+RTPLNAI G + +++   +      T   Y+  I ++  ++L++IN+IL
Sbjct: 325 SGFMARMSHEIRTPLNAITGMAYLLKKTDISL----TQSMYVDRITQASNNMLSIINDIL 380

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           D S+IEAG+ E+ E++ S+ DI++  + ++  + +E+ I      D  L      D K +
Sbjct: 381 DFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEIGFRLSKDSQLPNWFIGDPKRI 440

Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFG 425
            QV+LN+L+NA KFT  G   + + +        +IS  IKD G G+ + ++  + + F 
Sbjct: 441 EQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFNIKDTGIGMTQQQVEKLFSPFV 500

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           QG  +I     G GLGL I ++++   GG   + S   EG   I  L
Sbjct: 501 QGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDEGSTFIINL 547


>gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 776

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 12/285 (4%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++     F  ++   +  S   I   + E    + + E+ +   +  ++ AE+ N  KS 
Sbjct: 87  IIRIISIFGAFVGVAMAVSIYWIFRLKKE----VRKRELIQIDLERAKREAEDANEFKSS 142

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A MSHE+RTPLNAI G + +++   +      T   Y+  I ++  ++L++IN+ILD 
Sbjct: 143 FMARMSHEIRTPLNAITGMAYLLKKTEISL----TQSMYVDRITQASNNMLSIINDILDF 198

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+ EL  ++ S+  I+++ + ++  + +E+ I      DP +    + D+K + Q
Sbjct: 199 SKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKDPLIPNWFFGDQKRIEQ 258

Query: 371 VILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++LN+L+NA KFT+ G     V +            S++D G G+ E +I  +   F QG
Sbjct: 259 ILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIGMTEEQIKNLFMPFIQG 318

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              I     G GLGL I ++++   GG+  + S   EG   I  L
Sbjct: 319 DSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIHL 363


>gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 799

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +G I  S +HLL LINE+LD++RIE G+  L++  
Sbjct: 576 AIVGLTAIAGANV---ESQDRVIECLGKITESSRHLLGLINEVLDMARIERGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 633 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG    ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 693 DGGNTIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFEPFSRADDHRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS
 gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae]
          Length = 907

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 124 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 183

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 184 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 243

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 244 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 300

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 301 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 356

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 357 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 416

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 417 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 476

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 477 QMGGEIGVDSTPGEGSEFWISLKLPKAR 504


>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 769

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 18/348 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            + L  + +   +      +   L   ++        +++ +LA        +  H    
Sbjct: 5   AAGLRAWSILAVLAALAAALGAGLQWSSLQGPWRAVSAVSAVLAVVCGLCAALAAHRAAQ 64

Query: 211 NVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSHELRT 262
               L+ + E+ DL  E    +              ++ AE   LAK  FLA+MSHE+RT
Sbjct: 65  AQHALAQRLEEADLARERLQQELRRHGELEQELLRAKQAAEAATLAKGEFLATMSHEIRT 124

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA + EL 
Sbjct: 125 PLNGIIPMLELISSGQLSV----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELE 180

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
            +  +L +++   I +LQ  A+ + + +   I+PS+   V  D   +RQV+ NL+ NA+K
Sbjct: 181 ITTFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 240

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V + +               ++D G GIA  +   +  SF Q   +      G
Sbjct: 241 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGG 299

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            GLGL I + I+   GG+  + S+   G      +P  +V+  + +  
Sbjct: 300 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347


>gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1102

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 7/280 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F  +   L + N    + +  +D+L   +E         ++ AE  N+AKS FLA+MSH
Sbjct: 464 IFVGMVVDLSEINRAEEALRKHRDNLARLVEERTYELKIAKEAAETANIAKSAFLANMSH 523

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N++LGF ++     +        + ++   + S + LL +IN+ILD+S++E+G 
Sbjct: 524 EIRTPMNSVLGFIQITLESRL---LCAELRRHLETAYSSAKGLLIIINDILDVSKLESGE 580

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
           + L  + + +  IV+E +  ++ +A+EK I +    D  L   +  D   + QVI+NL+ 
Sbjct: 581 FALEATCLDMPRIVQEALKTVESQAEEKGIGLDFHFDADLPHCYLGDPTRLGQVIINLVG 640

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           NA+KFT  G   + V          + S+ D G G+   +   +   F Q  I+      
Sbjct: 641 NAIKFTKTGKITIGVRASDQGDASLHFSVADRGIGMTAEQAANIFNPFTQADISTARCYG 700

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPN 474
           G GLGL I++ ++   GG+  + S+L  GV       LP 
Sbjct: 701 GTGLGLTISKQLVELMGGRIWVESELGRGVTFHFTAQLPV 740


>gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
 gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
          Length = 1315

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 12/277 (4%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +  +   +A+  +++     AK   +     AEE N AKS FL++MSH++RTP+NAI+G 
Sbjct: 881  HRTLCLVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGM 940

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +  +    +G  ++E    Y+  I  S +HLL+LIN+ILD+S+IE  +  L+ S +S+  
Sbjct: 941  T-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPK 997

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ +  +M+  +A+E  + +  + +  +    + D   + Q+++NLLSNAVKFT  GG V
Sbjct: 998  LLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMV 1057

Query: 390  HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             +        G       + +++D G G+ E  +  +   F +   A     +G GLGL 
Sbjct: 1058 ELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAH--IEGTGLGLS 1115

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            I + ++   GG+  + S + EG      L   R    
Sbjct: 1116 ITKGLIDLMGGKISVESWINEGSVFRVELEFDRAQAE 1152


>gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 602

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 12/341 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           +++  A     F  + +L    ++   +  ++ A            ++Y   + N +I  
Sbjct: 145 YLIMIASIEVAFVAIASLLFSRLLVKELRKVTKAIEDIEVSGPGLTLSY---EKNDEIGQ 201

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             +  + +  E+          ++ A+  N AK  FL+ +SHE+RTPLN ILG ++++  
Sbjct: 202 VISAFNRMSVEMRKQYVQLSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQILGE 261

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                  +E  KE I  I  SG+HLL +IN+ILD++++E G+ EL     SL  +V+E  
Sbjct: 262 GV-----DEAKKEQISIIVSSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVK 316

Query: 337 IMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  ++K+++     +    + +  D   ++QVI NLL NAVKFT   G V     W
Sbjct: 317 NAFDNTCKQKSLDYVVTTEHIEGTYLAGDNTRLKQVIFNLLGNAVKFTKK-GAVTCHFQW 375

Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             S     I+I D G GI   ++ T+   F Q   +      G GLGL I   ++    G
Sbjct: 376 LESESRLTITITDTGIGIPTDKLETIFKPFSQADSSTTRHFGGTGLGLAIVTQLLELMSG 435

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE-STQYKCY 494
           +  + S++  G +    LP   V+      ++  STQ  C+
Sbjct: 436 KIELVSEVNVGSQCTVTLPMPSVITKPNRFSNALSTQTHCF 476


>gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 2415

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1883

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK ++  + +D       V  D
Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDLLVMGD 1999

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT + G V V         + I +     D G GI+E ++  +
Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPV-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLDRL 2058

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 935

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 140/249 (56%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I      +      R  A+  + +KS+FLA+MSHE+RTP+ AILG++E++    +     
Sbjct: 531 ITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEHDL----P 586

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +++  I R+G +LL++I+EILDLS+IEA + E++     L+ +V +   ++ +RA 
Sbjct: 587 AEACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMDVRAS 646

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK+++I    D  L   + +D K ++Q+++NL+ NA+KFT   G V + V +        
Sbjct: 647 EKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQ-GHVDLAVRYV-DGHLQF 704

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D+G G+++ +   +   F QG  ++     G GLGL I++ +    GG+  ++S+LR
Sbjct: 705 DITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQSQLR 764

Query: 464 EGVEVIAIL 472
           +G    A +
Sbjct: 765 QGSTFTATI 773


>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
 gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
           tasmaniensis Et1/99]
          Length = 909

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 27/337 (8%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           I+ L  + L   V      +V A     I    +       ML         +   +   
Sbjct: 190 IAMLFAYRLMRDVTGPIRNMVSA--VDRIRRGQLDSRVEGYML----GELDVLKNGINSM 243

Query: 211 NVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            + + +   E    I            ++E+     D  ++RA+E    KS FLA+MSHE
Sbjct: 244 AMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHE 303

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN ++GF+     +T+    N T ++Y+  I RS  +LL +IN++LD S++EAG+ 
Sbjct: 304 LRTPLNGVIGFT----RQTLKTALNSTQRDYLHTIERSANNLLGIINDVLDFSKLEAGKL 359

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L      L   + E +++L   A EK +E+   I   +   +  D   M+Q+I+NLL N
Sbjct: 360 VLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNIIGDPMRMQQIIVNLLGN 419

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT   G + + V   +         + I D G GI++ +   +  +F Q   +I   
Sbjct: 420 AIKFT-ESGNIDIRVEKRASSNNRMELEVQIHDTGIGISDKQQSQLFQAFRQADASISRR 478

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             G GLGL I Q ++   GG+    S+L  G      
Sbjct: 479 HGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFH 515


>gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1596

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 9/271 (3%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             L +               ++E +      +  R  AE+ + AK+ FLASMSHE+RTPLN
Sbjct: 1062 RLLRDAEGRAEGYVASVRDVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLN 1121

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
             ILG+++++      P      +     I  +G  LL ++N+ILD S+IEAG+ EL    
Sbjct: 1122 GILGYTDLLLD---DPSLGGGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQP 1178

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
              L  ++   + +++  A++K I +  ++D +    +  D+  +RQ++LNLL+NAVKFT 
Sbjct: 1179 FLLDALLDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTH 1238

Query: 385  IGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
              G V + V   S  G       ++ D G GI   +   +   F Q   +I+    G GL
Sbjct: 1239 A-GSVTLAVACESPPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGL 1297

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GL I+++++   GG   + S + EG      
Sbjct: 1298 GLAISKNLVELMGGTIGVESVVSEGTTFWFT 1328


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/271 (32%), Positives = 136/271 (50%), Gaps = 12/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  + L      +A   + AKS FLA+MSHE+RTPLN +LG +E++     G   N
Sbjct: 578 ITSRKETEVLLRNASDQAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLS----GTKLN 633

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  +  SG+ LL LIN++LD S+IEAG   +     +L   + + I +L +RA 
Sbjct: 634 PEQTTQLNVLKESGEGLLGLINDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRAD 693

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK I++  + D      +  D   ++Q++ NL+SNA+KFT+I G V V+V     +    
Sbjct: 694 EKGIDLLVEYDEVCPRFLVGDVFRIKQILTNLISNAIKFTSI-GHVLVSVKGIVDKHGMV 752

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GIA+   P + T+F Q   +      G GLGL I + ++    G   + 
Sbjct: 753 SITISVADTGVGIADKVQPHLFTAFVQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLS 812

Query: 460 SKLREGVEVIAI--LPNTRVLNFIPEDNHES 488
           SKL  G        LP +  +++I     E+
Sbjct: 813 SKLNVGSTFTVTFALPESHAMSYIETIVDEN 843


>gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1237

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 19/337 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-- 224
             P  +     A+   +        M      F  +    L    V +   ++  + L  
Sbjct: 512 LLPAALRGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQ 571

Query: 225 -----IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                I+E   A+    E  ++    N  KS FLA+MSHELRTPLN+IL  S+ +     
Sbjct: 572 AVIIDISERRAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLA 631

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L  E   ++   +HR+G  LL LIN++LDL+++E+GR +L    I++ D++ E    L
Sbjct: 632 GNLT-EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASL 690

Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---- 394
           +  A+ K + +  +ID  +  V  +D   + Q++ NLLSNA+KFT   G V +TV     
Sbjct: 691 RPMAELKGLSLHTQIDAGVPRVIHSDRVRLHQILRNLLSNALKFTDQ-GEVTLTVSSEGR 749

Query: 395 -WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++D G GI   +   V  +F Q   +      G GLGL I + ++    
Sbjct: 750 QEDERELLCFSVRDTGIGIDPAQHEQVFQAFQQIDGSTSRRFGGTGLGLAITRQLVLALD 809

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           G   ++S   +G      LP    +   P     +T+
Sbjct: 810 GDIGLQSTPGQGSTFTVRLP----VQSAPATAEPATE 842


>gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41]
          Length = 916

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/373 (27%), Positives = 162/373 (43%), Gaps = 22/373 (5%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALS---------ISALSNFMLPYAVFLSFFP 169
           L W  L L   G     Y +++ S  L+ A           +    N  L          
Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASLLLITAGLGLTALLALRMGRTINRPLSQIKQAVAQL 208

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
               L T+           LA  +             L  S  +      +  + I   E
Sbjct: 209 KDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P       +
Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I +S   LL +INEILD S+IEAG+  L     +L D++++ + +L   A  K +E
Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLE 381

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405
           +       +  S+  D   ++Q++ NL+SNA+KFT  G  V    +           ISI
Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISI 441

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  + S   EG
Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEG 501

Query: 466 VEVIA--ILPNTR 476
            E      LP TR
Sbjct: 502 SEFWISLRLPKTR 514


>gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 570

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 1029

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I E +  ++     + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 645 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 700

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +EYI  I  +   LL LI++ILDLS+IEAG  + S S + L DI+ E   +++ R 
Sbjct: 701 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 760

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402
           +   +++          +  ++  + QV+ NLL+NA KFT+ G    +T G+   GR  Y
Sbjct: 761 ETSGVQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 817

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+ 
Sbjct: 818 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 873

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            +G      +P      + P D     + K
Sbjct: 874 GKGSTFWFTIP------YQPADADNKKEDK 897


>gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 885

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 134/240 (55%), Gaps = 2/240 (0%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  K+ F+A+ SHELRTPL +I G+ +++ L T+GPL  E  ++++  +  + + L 
Sbjct: 641 ELADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLT-EQQRQFLSVVKNNIERLN 699

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N++LD+SRIE+G+  L    I+L ++++  ++ +  +   K I +   +   L  + 
Sbjct: 700 AILNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMI 759

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD + MRQ++ NL+SNA K+T  GGR+ V V    G    +++KD+G GIA  +   + T
Sbjct: 760 ADPERMRQIVTNLISNAYKYTRDGGRIDVVVS-NGGDSVTLAVKDSGVGIAADDQKHIFT 818

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +    +K    G GLGL I +S++  HGG+    S+   G      LP     ++ P
Sbjct: 819 RFFRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLPVGGDSDWTP 878


>gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 769

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/269 (40%), Positives = 158/269 (58%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   +EL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG   L   
Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   L ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 620 RIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTD 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ +          +++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 679 NGGRIALRTRRV-DGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ + HGG+  IRS+   G  +   +P
Sbjct: 738 SRSLTSLHGGRMKIRSREAVGTVISLRIP 766


>gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 1068

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 520 KLEKVLMASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +G I  S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 576 AIVGLTAIAGANV---ESKDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 632

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + +    E        I+     +V  D   ++QV +NL+SNA+K+T 
Sbjct: 633 FNLSELVDNLITLTKPMLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 693 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSTEFQKIMFDPFSRADDHRTTRVQGTG 752

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G  +   +
Sbjct: 753 LGMAISRNIVNLMNGNIKVDSTLHKGTRITVTI 785


>gi|260778315|ref|ZP_05887208.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606328|gb|EEX32613.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 591

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 146/267 (54%), Gaps = 8/267 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE    + +E ++ AE+ ++AK+RFLA+MSHE+RTPLNAI+G S+    +     
Sbjct: 99  RLSKDLEERTKVMEEAKRNAEQSSIAKARFLANMSHEMRTPLNAIIGLSQ----KEYYQS 154

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           ++E  + ++  I+ SG+HLL LIN +LDLS+IE G+ +L      + +++     +    
Sbjct: 155 SDEQTRHFLSMINSSGEHLLKLINNVLDLSKIEQGKSKLDSDEFFISELIDVSKTVFINF 214

Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
            +++ +++F  +       + +D+  + Q+I NL  NA+KFT  G   +H+++  +    
Sbjct: 215 DKQQAVDVFFSVSLDRNYKIKSDKTKLVQIINNLGYNALKFTESGHVEIHISLS-SESGM 273

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +I +KD G G+ + ++  V   F Q   +I     G GLGL I QS++   GG   + S
Sbjct: 274 LHIVVKDTGIGMTQEQLDKVFQEFTQADDSITRKYGGTGLGLSICQSLVNLLGGAISVES 333

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487
            L EG E    +P + + +  P  + +
Sbjct: 334 SLGEGSEFSIEVPVS-ITDSAPLASDK 359


>gi|90022761|ref|YP_528588.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952361|gb|ABD82376.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 861

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 161/472 (34%), Gaps = 48/472 (10%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ-----NPIFPMWSL 77
           +     + +  ++ I  ++         +L         +G +          +   W  
Sbjct: 1   MTNSSTTHLAKNQRIRLINSTWAAGGGVLLSFVAYYSTTMGLFLGDKNVLIWVLVGFWLG 60

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
               +      L K+  +  +                    + W + T      +T +  
Sbjct: 61  NFAFIGTIASGLNKRFRDPALT----------------LPQMYWAVSTTNIALMFTTQLD 104

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +Y    +L  +      +              ++              I    +   A 
Sbjct: 105 VLYYLLIMLTMVFGIFRLSVRQFNVFCYFAIAQLLLSLFVRYSLYASDAIGTLIINWVAF 164

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            F            + + +       L   L+       E          AKS FLA+MS
Sbjct: 165 GFCA----------ITLTALCNSIVRLRHRLKQKNEELSEAL-------KAKSEFLANMS 207

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ++G  +V     +    +     Y+     S Q LL +IN+ILD S++EAG
Sbjct: 208 HEIRTPMNGVIGMLDV----ALLSETSPEKHRYLSVARNSAQSLLGIINDILDFSKVEAG 263

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + EL      + D+V E ++     A++ ++E+   I P++S  V  D   ++Q++ NL+
Sbjct: 264 KLELEAIDTDIDDLVHEVLVNFSGLAEQNDVELIADISPTISHLVKCDPGRIKQILNNLV 323

Query: 377 SNAVKFTAIGGRVHVTVGWTS--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT   G V V              +  ++D G GIA      +  SF Q   +  
Sbjct: 324 GNALKFTPH-GEVLVKARAEKLVSGRIQLHFLVRDTGIGIAAQNQKHLFDSFTQADTSTT 382

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
               G GLGL IA+ +     G   + S   +G      +         P+ 
Sbjct: 383 RKYGGTGLGLSIAKRLCETMNGAISLESYEGKGSTFAFFIEVEASEERPPKA 434


>gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437]
          Length = 600

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 8/300 (2%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +    L+     +L      F  I  H     + +    A  D++   + V + +++E R
Sbjct: 305 LWPSPLEQFFHQVLEGEREVFGDIDVHGRTWALVMAPLYAGPDEIRGAVAVLRDVTEERR 364

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                 +  +  F+A++SHELRTPL+ + G+SE +  +     + E  +E    IH    
Sbjct: 365 -----MDKLRKDFVANVSHELRTPLSMLQGYSEALLDDI--AASPEDQREITRVIHDESL 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  L+ E+LDL+R+EAG   L  S + + +++R      Q  A+E+ + +   +   + 
Sbjct: 418 RMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMD 477

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  DE  + QV+ NL  NA++ T  GGRV +   +     Q I ++D G GI + ++P 
Sbjct: 478 PVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKGVQLI-VEDTGSGIPQEDLPF 536

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           V   F +   A    + G GLGL I + I   H G   ++SK  EG      LP    + 
Sbjct: 537 VFERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLPVKTPME 596


>gi|262384753|ref|ZP_06077886.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293734|gb|EEY81669.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 943

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  TS           + D G GIAE
Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTSEDQENVYLRFEVIDTGCGIAE 724

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784

Query: 475 TRVLNF 480
            ++   
Sbjct: 785 GKIKES 790


>gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1098

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 152/273 (55%), Gaps = 14/273 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +L+  ++   + ++ A+  NLAKS+FL++MSHELRTPLN ILGF++++        
Sbjct: 600 RDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILGFTQLLLRNR---S 656

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   +EY+  I+RSG+ LL LIN++L++S+IEAGR  LSE+   L  ++     M  L+
Sbjct: 657 LNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYGLLDRLQQMFALK 716

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           AQ + +++  +  P++   + ADE  +RQV++NLL NA+KFT   G+V + V   +    
Sbjct: 717 AQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFT-RIGQVTLRVETPNQNIT 775

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    S++D G GIA+ +   +   F Q     K A++G GLGLPI+Q  +   GG
Sbjct: 776 PDEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQK-AQEGTGLGLPISQRFVQLMGG 834

Query: 455 QFLIRSKLREGVEVIAIL-PNTRVLNFIPEDNH 486
              + S L +G      +     +++ +P    
Sbjct: 835 DIRVNSTLGKGSIFTFDIRTRAVIMDTLPTPAP 867


>gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 917

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
 gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
          Length = 947

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 143/273 (52%), Gaps = 9/273 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI    +  +      ++AE  + AKS FL+ MSHE+RTP+NAI+G +++     M P  
Sbjct: 546 LIFRSRLHSAKMKLELEKAEAGSRAKSDFLSRMSHEIRTPMNAIVGLADL---TEMIPSL 602

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +  +  I  S ++LL+LIN+ILD+SRIE+G+ EL ++  SL  ++ +   ML   A
Sbjct: 603 PEKAQINLTKIKTSSRYLLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEA 662

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           + + +    + +        D   +RQVILNLLSNA KFT  GG V + V       +  
Sbjct: 663 ERRELTFRVEKNLQHDVFIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTG 722

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GI+E     +  SF Q      +  QG GLGL I+++I+   GG+ L++
Sbjct: 723 NVLVQVIDTGIGISEENQKRIFRSFEQV-GPNATKCQGTGLGLAISRNIIKLMGGEILVK 781

Query: 460 SKLREGVEVIAILP-NTRVLNFIPEDNHESTQY 491
           S+L +G E    +      L+ +PE    + + 
Sbjct: 782 SELGKGSEFSFSISMLKGELHELPETKTNAKEI 814


>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 751

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 16/289 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +  ++    AE   L  +L+ A+  +++ R  AE  + AKSRFLA MSHELRTP
Sbjct: 191 QEELRAAEEQLTRLAAETFALAEKLDGAREEAEDARVAAENASRAKSRFLAMMSHELRTP 250

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           + A++G  +++    +G   NE     +  +  S   L+ ++N++LD S+IEAG+  L E
Sbjct: 251 MTAVIGMGDLL----LGTGLNEQQIALVKTLRSSADTLMTILNDVLDFSKIEAGQLTLEE 306

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              SL  +V + + +  +RA  K + +   I  +    +  D   +RQV+ NL+SNA+KF
Sbjct: 307 IDFSLPRLVEDVVQLFLVRAAAKGLSLSASIAENTPRHIRGDPTRLRQVLYNLVSNAIKF 366

Query: 383 TAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           T   G + + V                    ++D+G G+   +   +  +F Q   +   
Sbjct: 367 TDR-GAIEIAVWSPDPPASPLSASPMTLRFEVQDDGIGMTADQRARLFDAFVQADASTSR 425

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
              G GLGL I + ++   GG+  + S    G      +  TR     P
Sbjct: 426 KYGGTGLGLSICKRLVEAMGGEISVASTPGRGSTFRFSI-RTRRAEARP 473


>gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 917

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/405 (23%), Positives = 171/405 (42%), Gaps = 26/405 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            R  +++  +  G    ++ L     ++  +L   +  T  I + ++ ++  M   A+   
Sbjct: 1296 RNIVVLPVLFEGDIKAVIELASFHKFSDVHLGFLEQLTESIGIVLNTIAANMRTEALLKQ 1355

Query: 167  FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L    + +   +      A  L  +          L ++N ++        + 
Sbjct: 1356 SQALTDELRKQQEELTETNKRLEQQANSLQQSEELLKRQQEELRRTNEELQEKAKLLSEQ 1415

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ ++  EE        +  KS FLA+MSHELRTPLN++L  S+ +   
Sbjct: 1416 KNEVEHKNLEVEQAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSEN 1475

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            T G L      E+   IH SG  LL LIN+ILDLS+IE+G   +    +   D+      
Sbjct: 1476 TDGNLTG-RQVEFARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVER 1534

Query: 338  MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  A +K+++    ++ +L   V  D K ++QV+ NLLSNA KFT   G+V +++   
Sbjct: 1535 TFRQVADKKSLQFDISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFT-ESGQVTLSIQRA 1593

Query: 397  SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                                 ++D G GI + +   +  +F Q   +      G GLGL 
Sbjct: 1594 RAGWSSDHPILRTAPTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1653

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            I++ I    GG+  + S++  G      LP   V    P +  ++
Sbjct: 1654 ISREIARLLGGEIRLESEVGRGSTFTLFLPLKYVAP-RPTETGQT 1697


>gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 896

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|153834760|ref|ZP_01987427.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
 gi|148868795|gb|EDL67863.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
          Length = 576

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 8/280 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  S   + R+ AE  N +KS FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++   T+    +E+  E +  +  S   LL +I++ILDLS+IE+G + LSE 
Sbjct: 231 NSVLGMLDILRQSTL----SESQSEVLNQMECSADLLLAIISDILDLSKIESGSFRLSEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +L D V   I   +  A  KN+    + +  +    W D   + QV+ NL+ NA KFT
Sbjct: 287 WTNLRDAVTLVISQQKQVATSKNLSFEYQCNLDNNKQYWIDSTRLSQVLFNLIGNASKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG ++V+V         IS+ D G GI + +I  + T+F QG  +I     G GLGL 
Sbjct: 347 DFGG-INVSV-IERDGELVISVVDTGIGIPQSKIGHLFTAFHQGDSSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482
           I + ++    G   ++S+   G      +P  TR     P
Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRP 444


>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and
           Hpt domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 818

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  H  +  +++    AE   +  +LE +        + A+  N AKS FLA MSHE+R
Sbjct: 139 RLALHSEELKLEVAERTAELSSVNRQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIR 198

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+  +LG +E++    +    ++    ++  +  SG+ LL +IN ILD S+IEAGR EL
Sbjct: 199 TPMYGVLGMTELLLNTYL----SKEQARFVESVRCSGEALLGIINNILDFSKIEAGRMEL 254

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380
                 L  +  + + M    A  K I +  +I+P L  ++  D   +RQV++NLL NAV
Sbjct: 255 EMIPFDLHQLTADAVAMFADDAARKGIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAV 314

Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           KFT   G V ++V          ++++D G GI+      +   F QG  ++     G G
Sbjct: 315 KFTPE-GAVTLSVSLVRRPALVRVTVEDTGIGISREAQERIFDHFAQGDESMTRRYGGTG 373

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           LGL IA+ +    GG   + S+  +G      +         P +
Sbjct: 374 LGLAIAKQLTELMGGGMELSSEPGKGSSFSFTVALEPHQKAPPPE 418


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +       E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    ++L + + +        A+EK + + + I  S      
Sbjct: 418 LVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDISVSQPECVF 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T  GG VH+           I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL I ++I+  HGG   + S + +G      +P  
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFTFYIPTK 588


>gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E+ +  KS FLA+MSHELRTPLN+IL  S+++       LN +  + Y   IH SG 
Sbjct: 482 EQLEKSSQYKSNFLANMSHELRTPLNSILILSQLLAENENHTLNEDE-EGYAKVIHTSGT 540

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LI++ILDLS+IEAG+  L+   ++L +I     +     A+++ +     +  SL 
Sbjct: 541 DLLKLIDDILDLSKIEAGKVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLP 600

Query: 360 SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           +VW  D + ++Q++ NLLSNA KFT   G V +   +T      IS+ D G GI + +  
Sbjct: 601 AVWYTDGQRLQQILKNLLSNAFKFTEQ-GSVRLGFDYTDDGMLAISVTDTGIGIPKDKQK 659

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +  +F Q          G GLGL I    +   GG   + S L EG      LP 
Sbjct: 660 LIFEAFQQVDGKTNRIYGGTGLGLSICNEFVKLLGGSIQLDSTLGEGSCFTVYLPL 715


>gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1303

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 10/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  + +     + A++ N AKS FLA+MSHE+RTP+NAILG S +    +    N+
Sbjct: 541 ISVRKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRTS----ND 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  IH + Q LL++IN+ILD +++EAG+ E+     +L +++     +  ++A 
Sbjct: 597 PRQRAYLQKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVLDTLATLTSVKAD 656

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK + +  +    L   V  D   + Q++LNL  NAVKFT   G V V V     +G   
Sbjct: 657 EKGLALIFRRHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQ-GSVVVNVEKVQQQGDQI 715

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G G+ E +I  +  +F Q   +I     G GLGL I + ++    G+  ++
Sbjct: 716 VLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMAGELSVQ 775

Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484
           S    G      +P T V   + + 
Sbjct: 776 STPEVGSCFTFTVPFTVVQEQVVDA 800


>gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 821

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 9/260 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE    +     + AE+ N AKS FL+ MSH++RTP+NAI+G + +     
Sbjct: 275 TEQRELQKQLEERSEMLHNALQAAEQANKAKSDFLSQMSHDIRTPMNAIIGMTAIAGSHL 334

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +  ++ +  I  S + LL LINE+LD+SRIE+GR  ++E   SL ++++  + +
Sbjct: 335 ---DDKDRVRDCLQKITVSSRLLLGLINEVLDMSRIESGRISITEEEFSLNEMLQNIVTI 391

Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q     K      +  +    +V  D + ++QV LN+LSNAVK+T  GG++ +++    
Sbjct: 392 IQPSIMAKRHAFDIQARELQHENVTGDPQHIQQVFLNILSNAVKYTPDGGKILLSIREKP 451

Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            +           +DNG G+    +  +   F +   A   A QG GLG+ I+++I+   
Sbjct: 452 SQTAGYGCYEFVFRDNGYGMKSEFLRKIFKPFERAEDAAVRAVQGTGLGMAISKNIVQMM 511

Query: 453 GGQFLIRSKLREGVEVIAIL 472
            G   + S    G      L
Sbjct: 512 DGDIQVESTYGNGSTFTVTL 531


>gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB]
 gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1023

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +T  + +        +  +  L   +E   +   + ++ AE  N AKS FLA+MSHELRT
Sbjct: 597 VTRDVTERKRAEAELEQYRHHLEKMVEDRTAALSDAKEAAEAANRAKSTFLANMSHELRT 656

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G ++++   +     ++  +E +  + ++ +HL+ +IN+ILDLS+IEA R  L 
Sbjct: 657 PMNAIMGMTDLVLRRS----TDDRQREQLSKVVQASRHLMAVINDILDLSKIEAERLTLE 712

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAV 380
           +    L +I      ++  R  EK + +     P LS++    D   + Q++LNL  NAV
Sbjct: 713 KIPFRLTEIFDNLKNLVGERVAEKGLLLKISKAPELSNMVFRGDPLRLGQILLNLTGNAV 772

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFTA  G + ++V               + D G GIA  +   + T+F Q   +      
Sbjct: 773 KFTAE-GSIALSVSVVEDHPHDVVLRFEVCDTGIGIAAVDQGRLFTAFEQADGSTTREYG 831

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I++ +    GG   + S    G      
Sbjct: 832 GSGLGLAISRRLAKLMGGNIGVESTPGVGSTFWFT 866


>gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25]
 gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25]
          Length = 987

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 161/370 (43%), Gaps = 22/370 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L+ A    +E        RK+AE+ 
Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKRLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GIA+ +  T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQRTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q    +     G GLGL I++ I+   GG   + S+   G      +P        P 
Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGILEVDSEEGHGSRFWFSIPLE---ESEPV 698

Query: 484 DNHESTQYKC 493
           +       +C
Sbjct: 699 ETGAVATARC 708


>gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1156

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 128/268 (47%), Gaps = 3/268 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++NV++       +    E   AKS      +  E  +  KS FLA+MSHELRTPLN+
Sbjct: 432 LEQTNVQLEEQTQLMEAQRDEATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNS 491

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L  E  + Y   I  +G  LL LIN+ILDLS+IEAG  E+    +
Sbjct: 492 SLILAKLLADNRDGNLTAEQVR-YAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPV 550

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  +  +   + Q  A EK +    ++ P     +  D + + QV+ NLLSNA+KFT  
Sbjct: 551 PLASLAEDLTRVFQPIADEKKLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFT-E 609

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V +      G     +++D G GIAE +   V  +F Q          G GLGL IA
Sbjct: 610 SGEVALEASAAPGDRIAFAVRDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIA 669

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +    GG   + S+   G      +P
Sbjct: 670 RELARLLGGDIHLASEPGRGSTFTVTIP 697


>gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 922

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           + +        +     +    +     +    +  +E+     D  RK A E +  KS 
Sbjct: 233 LASGINRMAGTLQNAREELQHSVDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSE 292

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   + P       +Y+G I +S   LL +INEILD 
Sbjct: 293 FLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADSLLGIINEILDF 348

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       +  S+  D   ++Q
Sbjct: 349 SKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQ 408

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NL+SNA+KFT  G  V   +            ISI+D G G++  ++  +  +F Q 
Sbjct: 409 ILTNLVSNAIKFTREGTIVARAMLEEENDDSVQLRISIQDTGIGLSNQDVRALFQAFSQA 468

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR-VLNFIPED 484
             ++     G GLGL I++ ++   GG+  + S   EG E      LP TR     +P  
Sbjct: 469 DNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDAEDLPAA 528


>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 1223

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E+++ +        RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 647 VTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDT--- 703

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +   I +SG  LL +IN+ILD S+IEAG+ +L        + V + + +L   A 
Sbjct: 704 -RQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 762

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399
           EKNIE+  +IDPS+   V  D    RQV+ NL+ NAVKFT   G V + +       S  
Sbjct: 763 EKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFT-EMGHVLIELSAQSAEASET 821

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GI   ++ T+   F Q   +     +G GLGL I   ++    G   + 
Sbjct: 822 ILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVV 881

Query: 460 SKLREGVEVIAILP 473
           S++ +G      +P
Sbjct: 882 SEVGKGSTFEVNIP 895


>gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 899

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G+         
Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F +      +  QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715

Query: 464 EGVEVIAILPNTRVLN 479
            G      LP   V+ 
Sbjct: 716 TGTTFTFWLPLENVIQ 731


>gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 694

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 145/333 (43%), Gaps = 18/333 (5%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              +L +++     P+ + ++        ++DISLA +     +    I           
Sbjct: 121 GTSLLIHSLIAQDEPLGIMMACIEGDPGGIMDISLAFVTVVLGAAAGVIKNS-------- 172

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                  +DL  EL    S   E+  +  E N AK RFLA++SHE+RTPLNAILG + ++
Sbjct: 173 -RLYRMINDLNDELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIV 231

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             +     +       +  I   G  LL LIN+ILDLS++ AG  +L E+   L +++  
Sbjct: 232 RGK-----SPAEMDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELLEA 286

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
                +  A+ K ++    +   +   +  D   +RQV+ NLL NAVKFT+ G   + V 
Sbjct: 287 LEGSYRSEAKRKGLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVK 346

Query: 393 VGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              + G       S+ D G GI    +P +   F Q   +      G GLGL I++ I+ 
Sbjct: 347 SLRSDGDKLTLSFSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVR 406

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             GG   + S+   G      +        +PE
Sbjct: 407 AMGGDISVESERGRGSTFSLDVEVIPCDPPVPE 439


>gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 528

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 172/352 (48%), Gaps = 6/352 (1%)

Query: 126 LVEPGTWTPEYLTIYKSATLLI---ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           ++ P T   +   +   A +LI    ++  A S  + P     +   +  AL    +   
Sbjct: 139 VLLPSTTRVDRPVLTARAPILINGRRVAELATSASLWPTFFETALVTMFSALIAAGLYLG 198

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               +  A  L  AL            +  +     A        L+ A      TR  A
Sbjct: 199 IDRVVLRA--LRHALDHLQTAVRERDSALQETSDALALLARQNTRLKAASEELSRTRDAA 256

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
              + +KS FLA+MSHELRTPLNAI+GFSE++  +  GP+ +  Y++Y  DI  SG HLL
Sbjct: 257 LTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQLYGPIGHAKYRDYANDIRSSGDHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSV 361
            LI+++LDLSR+EAG+  L    + +++ +  C  ++Q RA +  I++      +  +++
Sbjct: 317 ALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCRLVQGRATDSGIDLRFAPAANPSATI 376

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D    RQ++LN+L+NAVKFT  GG V V +G  +     I + D G G+++ ++  V 
Sbjct: 377 LGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDDTAGTVVIRVADTGIGMSDDDLERVF 436

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F Q  ++   A +GVGLGL ++++++  H G   I S    G  V    P
Sbjct: 437 RPFEQAGVSGARAVEGVGLGLALSRALVREHDGTLNIASAPGRGTTVTLSFP 488


>gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
 gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
          Length = 528

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 19/384 (4%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
              +  G     + L+                  +I +  + ++  +          P+ 
Sbjct: 130 WPILLDGDSLGSVELLVSLDVLRNERNALILIAGVIVIFSTLIAFALSTTLQRALIRPIT 189

Query: 172 VALSTQAIMSMHVLDISLAGM-----LATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                   +S        A       L   ++ F ++   +   + +++  + + + L+ 
Sbjct: 190 HLAGVMHQVSSEKAYARRAVRETNDELGDLITGFNHMLEQIETQHRELMVYREQLERLVD 249

Query: 227 EL-----------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           +                +   E++   E  N  KS FLA+MSHELRTPLNAI+GFS+++ 
Sbjct: 250 DRTTQLQDANVRLHQTVADLQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMV 309

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +  G L +  Y++Y  DIH S  HL+ +I +ILD +RIE G+ EL E+ +S+  ++ + 
Sbjct: 310 NQLFGKLGDARYEDYAKDIHYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDA 369

Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + ++      + I++ Q+  P     +  D   +RQ+++NLLSNAVKFT  GG + + V 
Sbjct: 370 LRIISPSIHAQRIKLEQQALPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVK 429

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G    I+I D G GI E ++  V+T F Q   A     QG GLGL +++++M  H G
Sbjct: 430 IRDG--IEITITDTGIGIDEADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQG 487

Query: 455 QFLIRSKLREGVEVIAILPNTRVL 478
           +  + S+L EG  V    P  R++
Sbjct: 488 KLTLSSRLGEGTAVTIYFPAFRMM 511


>gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 899

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G+         
Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F +      +  QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715

Query: 464 EGVEVIAILPNTRVLN 479
            G      LP   V+ 
Sbjct: 716 TGTTFTFWLPLENVIQ 731


>gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1087

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 12/299 (4%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           ++  +    L     T ++          +S++  ++   E      +   A+    + R
Sbjct: 646 ITRLLAVPLLDSGKVTFIAVVANKPDDYDQSDITQVTLLLEGMLAHLKRRRAEEGHKQAR 705

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + AE  N AK+ FLA+MSHELRTPLN +LG  E+          +    +++     SG+
Sbjct: 706 EEAEAANRAKTEFLANMSHELRTPLNGVLGMIEL----AGMSCADPKTHDFLRMAKDSGR 761

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL++IN++LDL++IEAG+ EL +   +L + +      + + A+ K +     +D S+ 
Sbjct: 762 MLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQSVP 821

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------TSGRGQYISIKDNGPGI 412
             +  D    RQV+ NL+ NAVKFT   G V+++V        T        +KD G GI
Sbjct: 822 EHLVGDLGRFRQVVTNLVGNAVKFTEK-GEVNLSVMRIPHPFATDSVQIRFRVKDTGIGI 880

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +     +   F Q   +  S   G GLGL I+++++   GG   + S+  +G      
Sbjct: 881 PQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFT 939


>gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp.
           ATCC 51142]
          Length = 835

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 137/255 (53%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A+    + ++ A+  N AK+ FLA++SHELRTP+NAILGF+E+++L+     
Sbjct: 322 REITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAELLKLKL--KA 379

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EYI  I+ S   LL+LIN++LD++++EAG+ EL+    S+  ++ E I +   +
Sbjct: 380 QEPPIYEYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEIINIFSNQ 439

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A ++ +++   I  ++   +  D   +RQ+++NL+ N++KFT+  G + V++   +    
Sbjct: 440 ASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSK-GYIKVSLSMQNLYGN 498

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I ++D G GI + +   +  +F Q          G GLGL I Q I    GG   
Sbjct: 499 YGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEFLGGTIT 558

Query: 458 IRSKLREGVEVIAIL 472
           + S+  EG     + 
Sbjct: 559 LDSEWGEGSTFTLMF 573


>gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 565

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 243 EEENL--AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           E++NL   +  F+A++SHELRTPL  I  ++E +  + +   ++E    ++  I +    
Sbjct: 337 EQQNLDNMRKEFVANVSHELRTPLTTIKSYTETLLNDGV---DDEMRNRFLYIIDKEVDR 393

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++L LSR+++   +L+ +  +L + V E +  +++ AQ+KN ++         +
Sbjct: 394 MTRLVKDLLLLSRMDSNG-KLNLTEANLNEFVEEVLYKIKIEAQKKNQKLLFCAGEEKRN 452

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D+  M QVILN++SN++K+T  GG V V   +      YI + DNG GI + ++P +
Sbjct: 453 VNIDKDKMEQVILNIVSNSIKYTNPGGYVRVFTKYL-DDYAYIVVNDNGIGIPKKDLPRI 511

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +          G GLGL IA+ I+  HGG+  I S++  G  V   L
Sbjct: 512 FERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEIGVGTTVTVKL 563


>gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 1202

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 171/380 (45%), Gaps = 15/380 (3%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            +L+   A G    +L L     +  +  + ++   + I +++SA  +      +     
Sbjct: 384 IMLIPLFADGHIIGVLELGSTSNFDEDRASYFEDCCVNIGIALSAAKSREKEQQLLEETQ 443

Query: 169 PVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKIL---SCQAEKDD 223
                L  Q     ++     A    L  +          L ++N ++        EK+ 
Sbjct: 444 AQSEELQVQHSELENLNTELEAQTQKLQASEEELKVQQEELMQANAELEERSRLLEEKNH 503

Query: 224 LIAE--LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           LIAE   E+ K + +            KS FLA+MSHELRTPLN+IL  S ++       
Sbjct: 504 LIAERNNEIQKKVEELAL-----STKYKSEFLANMSHELRTPLNSILLLSRLMTENP-DE 557

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             NE   E    IH SG  LL LI+EILDL++IE+G+  L    + + ++V++   +   
Sbjct: 558 NLNEDQVESARVIHSSGSSLLTLIDEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNP 617

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
             QEK +     ID  +  V  +D   + QV+ NLLSNA+KFT  G   +H+        
Sbjct: 618 VFQEKALPFNIVIDEDVQKVIESDRLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPD 677

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KD G GIAE +   +  +F Q   + K    G GLGL I++ I    GG+ +++
Sbjct: 678 FIIFSVKDTGVGIAEDKQKIIFEAFQQADGSTKRKFGGTGLGLSISREIARLLGGELVLK 737

Query: 460 SKLREGVEVIAILPNTRVLN 479
           S++ +G E   I+P   V  
Sbjct: 738 SEVDKGSEFSFIIPVHAVTE 757


>gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
 gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
          Length = 631

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L  A S S E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 388 IRILRKAYSRSSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PEVDDR 443

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   I  +   LL LIN+ILD+S+IEAG ++   + I +   + E    +QLR +
Sbjct: 444 EEMREYTDIIETNTNLLLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLK 503

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +            ++ D+  + Q++ N + NA+KFT   G + +          Y  
Sbjct: 504 NDAVTFTFCERLPECMLYIDKNRLMQLLSNFIVNAIKFT-KSGSIRMGYRMKDINTIYFY 562

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +         QG GLGL I   I+ +  G+  + S+  +
Sbjct: 563 VSDTGCGMSPEQCRHVFERFVK----YNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGK 618

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 619 GSTFWFTLPYRK 630


>gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 740

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 28/255 (10%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           NLAKS+FLA+MSHELRTPLNAI+G+SE+++ +       E   + + +I+++G+HLL LI
Sbjct: 488 NLAKSQFLANMSHELRTPLNAIIGYSEMLQEDAEDLGEEEFVCD-VKNIYKAGKHLLGLI 546

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +EILDLS+IEAGR E+      +   +R+ +  ++    +    +  +    +  + +D+
Sbjct: 547 DEILDLSKIEAGRMEMELMTFDVRATIRDVVATVEPLLIKNANRLNVQYGEDIGFMHSDQ 606

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------------------SGR 399
             +RQ++ NLLSNA KFT   G + +TV                                
Sbjct: 607 TKVRQILFNLLSNAAKFTHD-GTISLTVSRERVAIESEKLKDRESDVENDLSKTLIADYD 665

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +  D G G++  ++  +   F Q   +      G GLGL IA+      GG+  ++
Sbjct: 666 FLIFNCTDTGIGMSSEQLQRLFQPFMQADPSTTRKYGGTGLGLAIAKKFCEMMGGEITVK 725

Query: 460 SKLREGVEVIAILPN 474
           S+L +G     I+P 
Sbjct: 726 SELGKGSTFTVIIPA 740


>gi|149925736|ref|ZP_01914000.1| periplasmic sensor hybrid histidine kinase [Limnobacter sp. MED105]
 gi|149825853|gb|EDM85061.1| periplasmic sensor hybrid histidine kinase [Limnobacter sp. MED105]
          Length = 581

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 172/449 (38%), Gaps = 22/449 (4%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ----NPIFPMWSLITLAVYA 84
           ++  +   I+    + LF   P +   V+  +                 +W L    +  
Sbjct: 3   AEDPYQLTILREQTKLLFEHLPFVLYGVMASSAGLVAVLWHTGQGTALLLWLLAVYMLTG 62

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
               + +   N      +   W    +    A G+ W    ++   T     +T+     
Sbjct: 63  LRWWVRRHF-NKLGAHFDPQHWIQVAIQFTAASGILWGFAGVMFFSTDPMVLMTLAIFLA 121

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            ++A ++S+ +     YA F    P  +    + +         L  +    +    +  
Sbjct: 122 AMVAGAVSSHACHTPAYAAFA--LPASLPFIARCLWENTPFLWVLGSVAFVYVLINIHYG 179

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            +L    ++ +  + +  +LI+E           ++ AE+ ++AK+RFLA+ SH+LR P+
Sbjct: 180 RNLQNMVIQSIRLRFQNAELISE-------LTLQKRVAEQASVAKTRFLAAASHDLRQPV 232

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            AI    E++       L N   K  +  I  +G  L NL+N +LD ++I A        
Sbjct: 233 QAI----ELLVDALSEDLANHPSKGLLDRIQEAGYGLRNLLNALLDSAKINAAAITAKPR 288

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L  +++     L  +AQ K ++I      + +  + D   +  V+ N + NA+K+T 
Sbjct: 289 HVQLAPLLKRICNELATQAQHKGLDIRV--AKTKACAYTDPALLELVVRNYVENAIKYTP 346

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV V           I + D G GI      TV   F Q     +   +G+GLGL I
Sbjct: 347 E-GRVLVGC-RKQNGQIRIEVHDTGIGIPASAQETVFQEFYQLGNPERDKAKGLGLGLYI 404

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           AQS+         + S + +G      +P
Sbjct: 405 AQSLGKLLNHDIGVNSTVGKGSMFYITVP 433


>gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens]
 gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Lens]
          Length = 910

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 19/370 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194
            + I      L  L +    ++ L   +++    +  ++    +      + +S  G L 
Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239

Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                  ++       +   N  I    A+    +  LE         +K+ EE++  KS
Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+MSHE+RTP+N ++GF+ V+    + PL      +Y+  I  S Q LL++IN ILD
Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINAILD 355

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+I+AG+  L    + +   + E + +    A +K I++    D ++   V  D   ++
Sbjct: 356 FSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKVIDLIPITDINVPKMVLGDPLRIK 415

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425
           Q+I NL++NAVKFT   G V +                +I D G GI+  +   + T+F 
Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I + +     G+  + S++ +G    A +   +++ +     
Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530

Query: 486 HESTQYKCYA 495
            E  Q   +A
Sbjct: 531 IEKNQTHRFA 540


>gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
 gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
          Length = 629

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +++  + +++AEE +  KS F+A+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 380 ITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL----PYMEDA 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + YI  I+ + + LLN+INE+LDLS+IEAG  EL+    SL +++ E     +    
Sbjct: 436 KEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVP 495

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + + ++   S   +  D   ++Q++ NLLSNA+K T   G V V+          IS
Sbjct: 496 E-GVTLKKRYPASPFLIEQDSMRIKQILSNLLSNALKNTTQ-GYVEVSYETEQSG-VKIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + ++  +   F +    I    QG GLGL I +SI+    G   + S L E
Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKVDSYI----QGAGLGLSICKSIIEQMNGTIEVASVLGE 608

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 609 GSTFTVTFP 617


>gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 684

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 8/269 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + EL+       E   +A++ + AKS FLA+MSHELRTP+N +LG +++I+ ++    
Sbjct: 138 HRLFELKRNNLSYQEAADKAQKASEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSAD 197

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++    I  SGQHL+ ++N+ILD S++E G+ EL  S  S+ D+V      L   
Sbjct: 198 T----RKQAQIIIDSGQHLVTILNDILDFSKVEQGKMELELSPFSVTDVVTHLDKTLTPL 253

Query: 343 AQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A +K I        P+   +  D    RQ++ NL  NAVKFT  G   V   +  T+   
Sbjct: 254 ATDKGISFVIKDNIPTNIQLVGDSARTRQILFNLAGNAVKFTESGKVEVEFEIAPTTPPS 313

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D G GIAE ++  + T+F Q  ++      G GLGL I + ++   GG   + S
Sbjct: 314 VNIMVSDTGIGIAEDKVDHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTIDVSS 373

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489
           +L  G      LP    ++ + +   E  
Sbjct: 374 QLNMGTCFTISLPLE--MHELEQQTTEQA 400


>gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A
 gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2150

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 146/271 (53%), Gaps = 18/271 (6%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             L       D+ +  ++ + + +  ++ AEE N AKS F+A++SHE+RTPL+ ++G S++
Sbjct: 1354 SLRMAGTLRDMTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDL 1411

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +    +    +E  ++Y+  I +S Q LL +IN+ILD S++E+ + ++     S+I+  +
Sbjct: 1412 LLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQ 1467

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-V 391
              I ML + A   +++I  ++ P++  +   D   MRQV+LNLLSNA+KFT+ G  +  +
Sbjct: 1468 AVIHMLSV-AANDDVDILLRVPPNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGHVLTDI 1526

Query: 392  TV------GWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            +V        T     +  I+I+D G GI +    ++   F Q   +      G GLGL 
Sbjct: 1527 SVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLS 1586

Query: 444  IAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473
            I + ++    GG   + S + +G +   I+P
Sbjct: 1587 ITKRLIEEVMGGTIQVSSIVGQGSKFKCIIP 1617


>gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
          Length = 928

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 9/255 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E  +   ++  + A+  N AK+ FL+SMSH++RTP+NAI+G + + +   M     + 
Sbjct: 397 EQERQRIALEDAYQTAKVANEAKTNFLSSMSHDIRTPMNAIMGMAAIAK---MNTNEPDK 453

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++ +  I+ S +HLL+LINE+LD+S+IE+G+  L    I L ++V     + +    EK
Sbjct: 454 VRDCLNKINISSKHLLSLINEVLDMSKIESGKINLMLEKIDLSELVENVADICKPLVAEK 513

Query: 347 NIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RG 400
           N ++           V AD   ++QV+LNL+SNA+K+T  GG +   +   S        
Sbjct: 514 NQQLKMSVGRVRHEKVIADGDRLQQVLLNLMSNAIKYTPEGGTITFRINELSSAIDNLGQ 573

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
                 DNG G+AE  IP +   F +   +  S  QG GLG+ I  +I+    G   ++S
Sbjct: 574 YEFIFIDNGIGMAEDFIPHIFEPFSRAEDSRISKIQGTGLGMAITDNIVRMMNGIIEVQS 633

Query: 461 KLREGVEVIAILPNT 475
            L  G + +  +P  
Sbjct: 634 TLGVGSKFVVSVPME 648


>gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus
            H143]
          Length = 2390

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F          +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1817 VGISLANAFLYRNASKHSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1876

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1877 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1932

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   +++ ++  + +D    +  V  D
Sbjct: 1933 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1992

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V             I+  + D G GI+  ++  + 
Sbjct: 1993 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 2052

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    VL+ 
Sbjct: 2053 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2108

Query: 481  IPED-------NHESTQYK 492
             P++       + +STQ K
Sbjct: 2109 APKNAVVKTPWSQDSTQEK 2127


>gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 776

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/276 (39%), Positives = 152/276 (55%), Gaps = 2/276 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + + +   QA  +    EL          + RAEE N  KS+FLA+MSHELRTPLN
Sbjct: 497 RLRATVIDLKRSQAALERQTNELADLAEKYQREKTRAEEANQTKSKFLANMSHELRTPLN 556

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++     G L +E Y+EY  DI  SG +LL +IN+ILD+S+IEAGR +L    
Sbjct: 557 AIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVINDILDMSKIEAGRMKLDMEE 616

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L   + E + ++  RAQ+K++ +   I+ S+ SV AD +  +Q+I+NLLSNAVKFT  
Sbjct: 617 LDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRRATKQIIVNLLSNAVKFTPD 675

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGR+ V           + I D G GIA   +  +   F Q    +     G GLGL IA
Sbjct: 676 GGRIVVR-SRQLDDRIVLMIADTGIGIAPHSLARLGRPFEQVESQLTKTYHGSGLGLAIA 734

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +S+   HGG   +RSK+  G  V   LP   V    
Sbjct: 735 RSLAQLHGGSMRLRSKIDVGTVVRVTLPRDAVKAAS 770


>gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 917

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                          L   ++ I    TLL        +   +    + T  +A+ +S  
Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            N  +              L T+           LA  +    +        L  S  + 
Sbjct: 194 INRPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +  + I   E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ ++
Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   + P       +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++
Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366

Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390
            + +L   A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    
Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +           IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++ 
Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476
             GG+  + S   EG E      LP  R
Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514


>gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 883

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 140/315 (44%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +    +  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDMIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLNEIQVSNLEVA 735

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 736 ATVDEVIPAEVVEET 750


>gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
 gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
          Length = 883

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 735

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 736 ATVDEVIPAEVVEET 750


>gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 925

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 19/274 (6%)

Query: 231 AKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +  S   +++  +E N AK+ F+A + HE+RTPLNA+ G + ++    +    N   +E
Sbjct: 243 KELESQIAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQEE 298

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  I  SG++LL +IN ILD S+IEA + EL E    L   + E + +   +A +K +E
Sbjct: 299 FVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLE 358

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------ 396
           +   I+P+   ++  D   +RQ++ NLL NAVKFT   G V V V               
Sbjct: 359 LAYLIEPNTPSAIVGDSTRLRQILSNLLGNAVKFTEK-GEVVVYVSAQPLPNSDRTDKTL 417

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +      ++KD G GIA  +   +   F Q   +      G GLGL I+Q +    GG+ 
Sbjct: 418 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 477

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + S   +G      +      +  P  + +  Q
Sbjct: 478 WVHSTEGKGSTFYFTIQAQATPSSSPATSQQGQQ 511


>gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 574

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E ++       + E   +++  I+     L  LIN+
Sbjct: 346 MRSQFVANVSHELKTPLTSIKGFAETLK----YVDDVENKNKFLNIINDEADRLTRLIND 401

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE+   +     + + DIV++   M++  A +KNI+I +  D  + S+WAD   
Sbjct: 402 ILTLSHIESNSID-KVEEVKIDDIVKDVCCMMKTAAYKKNIKIEKIGDK-VPSIWADADR 459

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q+ +NL+ N++K+T  GG V +           + ++DNG GI++     +   F + 
Sbjct: 460 FKQMAINLMDNSIKYTNNGGTVKIGT-MLQDNNCVLWVEDNGVGISKEHQSRLFERFYRV 518

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             A    + G GLGL I + I+    G   ++S++ +G +    +P 
Sbjct: 519 DKARSRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIPL 565


>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 927

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 134/258 (51%), Gaps = 8/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I  L+  ++  + T+K+AE  +LAKS FLA+MSHE+RTP+NAILG +E++    +   
Sbjct: 384 EDITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLSI- 442

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + ++     +G++LL +IN+ILD+S++E+G  EL     +L  IV +   +++ R
Sbjct: 443 ---EQRGFLSVCRSAGENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEVIRFR 499

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           + EK +     ID S+   +  D   +RQ+++N L NA+KFT  G    V          
Sbjct: 500 SHEKGLHQLIFIDESVPEWLLGDPARIRQILINFLGNAIKFTEAGTIATVVSTTAGKGSQ 559

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI E +   V  +F Q   + +    G GLGL I++ +    GGQ  +
Sbjct: 560 VEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGGQLGL 619

Query: 459 RSKLREGVEVIAILPNTR 476
           +S+   G      L  +R
Sbjct: 620 KSQEGHGSTFTLSLRLSR 637


>gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 942

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 6/275 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  + +        +  ++ L   +    +     ++RA+  N AKS FLA MSH
Sbjct: 430 FLLGISRDITEQKQAEAELRRYREHLEDMIRERTAELAVAKERADAANQAKSEFLAHMSH 489

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG++++++        ++   + +  I RSG+HLL LI++ILD+++IEAGR
Sbjct: 490 ELRTPLNGILGYAQILKR---DTTLDQHQLDGLTVIQRSGEHLLTLIDDILDIAKIEAGR 546

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            EL+ S + L   V      ++++A EK ++   ++ P L   V  DE  +RQ +LNLLS
Sbjct: 547 MELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDLPACVRVDEIRLRQALLNLLS 606

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA++FT   G V + V +         ++D G GI +G +  + + F Q S        G
Sbjct: 607 NAIRFTEK-GSVRLRVAFLPPARLCFEVRDTGIGIDQGRLEEIFSPFEQVSDDRHR-FGG 664

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I++ ++   GG+  + S+   G      L
Sbjct: 665 TGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699


>gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 837

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 4/260 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +   A+  + E R  AEE    KS F+A+MSHELRTPL +I+GF+E+     +    +
Sbjct: 580 VTDFRAAEQATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFAEL---GHLRSRKS 636

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             + E   DIH +GQ +L L+N++LD++++E+    +    I L  ++R     L+    
Sbjct: 637 PQFSEMFNDIHSAGQRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARELEPLQH 696

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I++   ++       AD    +QV+ N+L+NA+KF+   GRV V   +       I 
Sbjct: 697 QKQIDLRLDLENFPMIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGNICID 756

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
             D GPGI   E+  +   F Q S   K    G GLGL I + I+    G    ++K   
Sbjct: 757 FSDQGPGIPPQELDQIFQPFVQSSK-TKDGSGGTGLGLAICRKIIDAMDGTISAKNKPDG 815

Query: 465 GVEVIAILPNTRVLNFIPED 484
           G      LP+  V    P +
Sbjct: 816 GAIFRITLPSRSVYETQPGE 835


>gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329]
          Length = 988

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L  A    +E        R  AE+ 
Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GI++ +  T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F Q    +     G GLGL I++ I+   GG   + S+  EG      +P      
Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697


>gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 787

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 7/269 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +    + +L+       E  ++AE    AKS+FLA+MSHELRTP+N +LG S++I  ET 
Sbjct: 241 QTQHRVNKLKQLNDDLTEATEKAERAAKAKSQFLATMSHELRTPMNGVLGISQIIASET- 299

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   KE++  I  SGQHL+ ++N+ILD S++E  + EL  +  +L  ++      +
Sbjct: 300 ---KERETKEHVQVILDSGQHLMTILNDILDFSKVEENKLELEAAPFNLPQVLTPVCSAI 356

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q   +EKNI+++ + + P       D   +RQ++ NL  NAVKFT+  G V +       
Sbjct: 357 QPLIEEKNIKLYVENEVPENIEFNGDCARIRQILFNLAGNAVKFTSD-GHVLIRAELDEP 415

Query: 399 RGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           R + + SI D G GI   +   +  SF Q   +      G GLGL I + +    GG+  
Sbjct: 416 RKRLLLSINDTGIGIPADKQDRIFNSFEQADTSTTRKFGGTGLGLAIVKKLTELMGGEVK 475

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           ++S    G + +  LP       +P+   
Sbjct: 476 LKSVESIGTQFLVELPIPWEEKALPKAAD 504


>gi|168022780|ref|XP_001763917.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162684922|gb|EDQ71321.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 379

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 19/280 (6%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           EL  A      ++K+AE+ + AKS FLA+MSHE+RTP++ ILG + ++    + P     
Sbjct: 5   ELRKANEELQVSQKKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLLESDLSP----D 60

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E +  +      LL++IN +LDL++IEAGR E+ +   ++  +V     MLQ RAQ++
Sbjct: 61  QTESLQSVKECADLLLHIINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQR 120

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----- 400
            +++  ++D S+   +  D   ++Q +LNL+ NA+KFT   G V V+V  T+        
Sbjct: 121 GLKLLWEVDKSVPQTLMGDVGKLQQCLLNLVGNALKFTHE-GSVTVSVILTNDTTTAQDA 179

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    ++D G GI++  +  +   F Q   +      G GLGL I Q  +   GG 
Sbjct: 180 PDTMFVEFEVRDTGIGISQEILLDMFKPFKQADASTSRLYGGTGLGLCIVQRFVELLGGT 239

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
               S++ +G     +LP     +  P++N   +  K ++
Sbjct: 240 IWAESEVGKGSAFHFLLPF---FSNNPKENPLESSSKMFS 276


>gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 677

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 151/378 (39%), Gaps = 28/378 (7%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            ++ L      TP            I ++++++        +          L +Q    
Sbjct: 13  GVIVLGSLEMLTPIQQEFIHQIMPSIGIAVNSVEARTKMQQLLQKTQVQAEELQSQQAEL 72

Query: 182 MHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD--- 236
            H  +   +    L +        T  L ++N ++     + +    ++       +   
Sbjct: 73  QHSNEELQSQSEELQSQTEELQSQTEELRQTNDELEERTQDLERQKNDVREKNLALEKTQ 132

Query: 237 ---ETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              E +    E  +  KS FLA+MSHELRTPLN++L  S+++     G L +    EY  
Sbjct: 133 QAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTD-KQLEYAQ 191

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IH +G  LL LIN+ILDLS++EAG+ E+    ISL D +          A+ K +    
Sbjct: 192 TIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENKELAFDI 251

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT----------------VG 394
            +   +  ++  DE+ + Q+I NLLSNA KFT  GG  + V                   
Sbjct: 252 TVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVSTSLITD 311

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G     S+ D G GI + +   +  +F Q          G GLGL I++ +    GG
Sbjct: 312 LQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQLARLLGG 371

Query: 455 QFLIRSKLREGVEVIAIL 472
              + S+  +G      L
Sbjct: 372 DLQLHSEEGKGSTFTLYL 389


>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 785

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 160/367 (43%), Gaps = 25/367 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L            ++  + L++ + +++L          +    +  AL+        + 
Sbjct: 143 LRLEFDADLVAEDLWSISVLVLGVGLASLV---------VGLLLIRWALNHWLGGLQKLR 193

Query: 186 DISLAGMLATALSFFTYIT------YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           ++       +  +    I         L     +      E++   A LE AK  +++ R
Sbjct: 194 EVVQTLGTGSGETEKLVIEGAPAEIQSLVAMFNQTAVLVREREGSRAALEQAKLAAEKAR 253

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE+ +LAKS+FLA+MSHELRTP+NAILG  +++E    G    +  + Y  +   + +
Sbjct: 254 HTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLE----GTELTDKQRSYTHNTASAAR 309

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL+L+N+ILD S++EAG+  L         ++R+  ++L      K IE+   +   + 
Sbjct: 310 SLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIEVLFDVGTDVP 369

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAE 414
            ++  D+  ++QV++NL  NAVKFT   G V + +   +  G       ++ D G GIA 
Sbjct: 370 NALVGDDMRLQQVLINLGGNAVKFTER-GEVVIRLRLKATNGAKAFVEFAVSDTGIGIAS 428

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                + + F Q   +      G GLGL I Q ++   GG   + S   EG      +P 
Sbjct: 429 ENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVDSVPGEGSNFHFTVPL 488

Query: 475 TRVLNFI 481
               +  
Sbjct: 489 QIAPSAA 495


>gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 982

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 6/253 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +L   ++      ++     E+ N  KS+FLA+MSHE+RTPL AI+G +E I       
Sbjct: 463 QELELRVKQRTHELEDLTIELEKANQVKSQFLANMSHEIRTPLTAIVGHAEAI---IHDD 519

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           ++ +   E I  IH +  HLL LIN+ILDLSRIEA ++EL    + L +++++       
Sbjct: 520 IDKDKVHEDIEVIHGNSLHLLELINDILDLSRIEANKFELEVQPLDLAELIQDLSHTFTS 579

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +AQ+K ++   +   P+   +  D   ++Q++LNL +NA+KFT   G+V +++       
Sbjct: 580 QAQQKQLDFTIEHQLPAPFIIHIDSLRLKQILLNLCANAIKFT-ESGQVMLSITQQKE-E 637

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++ D G G++E  +  V   F Q   +I     G GLGL ++  +     G   + S
Sbjct: 638 LVFTVTDTGIGLSEEHLAQVFEIFTQADNSISRRFGGSGLGLTLSNQLAKLMLGNIEVTS 697

Query: 461 KLREGVEVIAILP 473
           +L +G      LP
Sbjct: 698 ELGKGSCFCLTLP 710


>gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 924

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  ++RA
Sbjct: 242 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 301

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+  + N T ++Y+  I RS  +LL
Sbjct: 302 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 357

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  L      L   + E +++L   A EK +E+   I   +    
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             D   M+Q+I+NLL NA+KFT   G + + V   +         + I D G GI+E + 
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 476

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F Q   +I     G GLGL I Q ++   GG+    S+L  G      +
Sbjct: 477 SKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531


>gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
 gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
          Length = 988

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L  A    +E        R  AE+ 
Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GI++ +  T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F Q    +     G GLGL I++ I+   GG   + S+  EG      +P      
Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697


>gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 570

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB]
 gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1560

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               + +  L   +       +  +  AE  + AK+ FLA+MSHE+RTP+NAI+G + + +
Sbjct: 952  ELNSYRQHLEQLVAERTEELNHAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQ 1011

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              T    ++    + +G +  +  HL+++IN++LD+S+IEA + +L  +  SL  +    
Sbjct: 1012 RST----SDPEQNKRLGKVADAAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAA 1067

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
              ++  RA  K + +   IDP+L  V   D   ++Q++LN LSNA+KFT  G   + V  
Sbjct: 1068 CELVTQRADAKRLPVTCIIDPALPPVLCGDPLRIQQILLNFLSNAIKFTERGKIDIRVQA 1127

Query: 394  GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
               SG G  I   + D G GIA      +   F QG  +      G GLGL I++ +   
Sbjct: 1128 LQKSGDGILIRCAVSDTGIGIASDAQRKLFVPFEQGDASTTRRYGGTGLGLAISRRLAEA 1187

Query: 452  HGGQFLIRSKLREGVEVIAI 471
              G+  + SKL +G      
Sbjct: 1188 MHGEIGVDSKLGQGSTFWFT 1207


>gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 133/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +++    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 380 ITRLKDTEAMLILAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSGLL----PYIEDA 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    YI  I+ + + LLN+IN++LDLS+IEAG  ELS   ++L D++ E     Q R  
Sbjct: 436 EERDRYIALINHNNELLLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQ-RNV 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            + + +  +       +  D   ++QV+ NL+SNA+K T   G V ++   T      IS
Sbjct: 495 PEGVTLKTRYPAIPRLIEQDPMRIKQVLSNLVSNALKNTTQ-GYVEISYE-TGQSEARIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + ++  +   F +      S  QG GLGL I +SI+ +  G+  + S + E
Sbjct: 553 VSDTGCGIPQEKLGVIFERFEKTD----SFVQGAGLGLSICKSIVEHMNGRIEVISAVGE 608

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 609 GSTFTVTFP 617


>gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 637

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 15/265 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +         E ++RAE+ +  KS FLA+MSHE+RTPLNAI+GFSE+I        
Sbjct: 258 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY+  I R+   LL LIN+ILDLSRIE+G+ E+    + +  +V E   + QL+
Sbjct: 314 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +  N+E+             D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 374 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GI++ ++P + T F +         QG GLGL I +SI+   GG+  + S+L
Sbjct: 431 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 486

Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487
            +G      LP       IP++  E
Sbjct: 487 GQGSMFALYLP----YQEIPKEVAE 507


>gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
 gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
          Length = 571

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S+F+A+++HEL+TPL +I GF+E ++       + ET  +++  I+     L  LIN+I
Sbjct: 348 RSQFVANVTHELKTPLTSIRGFAETLK----YVEDRETKDKFLNIINDESDRLTRLINDI 403

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS IE     +    IS+ +++ + + +++  A++KNIE+F   D     +  D    
Sbjct: 404 LALSHIENSN-SMKLENISINEMLEDIVYLMENSAKDKNIELFIVGDKMQP-IKGDRDRF 461

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+++NL+ N +K+T  GG+V++           + ++D G GI++  +  +   F +  
Sbjct: 462 KQMMINLVDNGIKYTEEGGKVYIGAK-KEDNNCIVWVEDTGVGISKEHVERLFERFYRVD 520

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            A   ++ G GLGL I + I+   GG   I S+  +G + I  +P  
Sbjct: 521 KARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIPIK 567


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 767

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 20/345 (5%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           ++  A         V L+      A + Q +       I        AL          +
Sbjct: 1   MAARAGGLRGWSTLVALAALVAASAAALQWLGVAGPWRIVTTAASVLALVCGICTAVAAY 60

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDE----------TRKRAEEENLAKSRFLASMSH 258
           +++  + +   + DD        +                ++ AE  +LAK  FLA+MSH
Sbjct: 61  RASRTLSALTRQLDDTNTAQARMQQELQRHGELEQELLRAKQAAEAASLAKGEFLATMSH 120

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN I+   E+I    +        ++ +     S   LL ++++ILD S++EA +
Sbjct: 121 EIRTPLNGIIPMLELISRGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            EL  +  +L +++     ++Q  A+ K + +   I+PS+   V  D   +RQV+ NL+ 
Sbjct: 177 LELEITTFNLRELLDGVAQLMQRTAEGKQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIG 236

Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + +               ++D G GIA  +   +  SF Q   +   
Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAADQQARLFRSFAQADASTTR 295

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
              G GLGL I + I+   GG+  + S+   G      +P  +V+
Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVI 340


>gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103]
 gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 27/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  L I+ L  + L   V     P+   +ST   +    LD  + G     L
Sbjct: 196 VFIATLMLLFCLCIAMLFAYRLMRDV---TGPIRNMVSTVDRIRRGQLDSRVEG---HML 249

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
              + +   +    + + +   E    I            +LE+     D  +KRA+E  
Sbjct: 250 GELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVELDLAKKRAQEAA 309

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN +LGF+  +    +      T ++Y+  I RS  +LL++IN
Sbjct: 310 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRT----TQRDYMLTIERSANNLLSIIN 365

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD SR+EAG+  L      L   + E +++L   A EK +E+    D S+   V  D 
Sbjct: 366 DVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNVIGDA 425

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVL 421
             ++Q+++NL+ NA+KFT   G +++ V   +         I ++D G GI+E +   + 
Sbjct: 426 LRLQQILINLMGNAIKFTEK-GTINLRVEQHTITATHVELEIQVRDTGIGISEEQQAQLF 484

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +I     G GLGL I Q ++    G+    S+   G      
Sbjct: 485 QAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWVR 534


>gi|239626628|ref|ZP_04669659.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516774|gb|EEQ56640.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 961

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 11/305 (3%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             LA      +S       + +  ++  +      D+   E E  +   +     A+  +
Sbjct: 387 HLLADGEYHWISTQIIYVDNPYSDDMLAILISRRIDEQRHEEEQQRLALESALDSAKAAS 446

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKSRFL++MSH++RTP+NAI+G + +         + +   E +  I+ SG+HLL+LIN
Sbjct: 447 NAKSRFLSNMSHDIRTPMNAIIGMTAIAAAHI---DDRDRVLECLKKINLSGKHLLSLIN 503

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADE 365
           ++LD+S+IE G+  + +   +  ++V +   +++ +A    + +   + P    +V  D 
Sbjct: 504 DVLDMSKIENGKLSMRDEPFNFPELVADAAELIRSQANAGRLAMDVCLSPMKHENVVGDP 563

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTV 420
             MRQV +N+LSNAVK+T  GG V +                    D G G+    +  +
Sbjct: 564 LRMRQVCINILSNAVKYTPPGGFVRIEAWQEESPVLGYANYVFRCTDTGVGMEPSFLEHI 623

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +          G GLG+ I ++I+    G   + S   +G      +P    L  
Sbjct: 624 FQPFERARDHAGMRVAGTGLGMAITKNIIDLMNGDIHVESSPGKGSVFTISIPLK--LQD 681

Query: 481 IPEDN 485
            P++ 
Sbjct: 682 APKEQ 686


>gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens]
          Length = 1056

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 12/294 (4%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +   I   + +      +        I+E +  ++   ++R  AE    AKS FL  MS
Sbjct: 421 LWVLDIGKIMQRDANGAPTRVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMS 480

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLNAI+G + +     + P+     ++YI  I R+ +HL+  IN +LDLS+IEAG
Sbjct: 481 HEIRTPLNAIIGMAHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAG 536

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  + +    L ++V + +++++ RA+EK + +   I  SL      D   + QV+ NL+
Sbjct: 537 KLSMEQVGFDLRELVDDVLLLVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLV 596

Query: 377 SNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT   G V + V     W        S+ D G GI++ +   +   F Q   +I 
Sbjct: 597 DNAIKFTEA-GHVCIGVCLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSIS 655

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
               G GLGL I++ I+    G   ++S+  +G            L+ +P + +
Sbjct: 656 RRYGGSGLGLTISKKIVQLMQGDIWVKSQPGQGATFKFS--VQLSLSPLPLEEN 707


>gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 892

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G+         
Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F +      +  QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715

Query: 464 EGVEVIAILPNTRVLN 479
            G      LP   V+ 
Sbjct: 716 TGTTFTFWLPLENVIQ 731


>gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 2153

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 1/246 (0%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E + AK  F++S+SHELRTPL +I G+ +++ L   GPL NE  K+ +G +  +   L++
Sbjct: 1907 EADRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPL-NEEQKKSLGVVKNNANRLMD 1965

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN+IL++ RI++ + +L+   + + DI R+    L+   + K +     +      V+A
Sbjct: 1966 LINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIKRKRLSFTFDVAADTPPVFA 2025

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D++ + Q++LNL SNAVK+T   G V +  G        + + DNG GI+  +   +   
Sbjct: 2026 DKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2085

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F +    ++    G GLGL IA+S +  HGGQ  + S L +G     I+P     +    
Sbjct: 2086 FYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGKGSTFSFIIPLRPSTSEASS 2145

Query: 484  DNHEST 489
            +  E +
Sbjct: 2146 EMPEQS 2151


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
          Length = 1160

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +LE          +  E+ N  +S FLA+MSHELRTPLN+I+  S+++  + +   + +
Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E I  I+++GQ LL LIN++LDLS++E+G+  L+       +++ +   M +  A+E
Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404
           KNI  F + D   S +  D   + Q++ N LSNA KFT+ G  +    +          S
Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDLIFS 692

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  I  +   F Q    I     G GLGL I++ +     G+  +RSK+ E
Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 753 GSTFFLKLP 761


>gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 573

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 149/308 (48%), Gaps = 8/308 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAEL 228
           +  AL T A  ++    I L G      +  +  T   F+  ++      E+ + L   +
Sbjct: 131 INSALITGAQGTITDSIIVLLGEEVGQFTLESRDTLSRFRPLLERALIDIERTEQLQQLV 190

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           ++        + RAE+ N AKSRFLA MSHELRTPL+A+LG+ +V+  ++          
Sbjct: 191 DIKTRQLKSAQVRAEQANQAKSRFLAMMSHELRTPLSAVLGYVDVLLADSKCDH----QI 246

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  +  S + LL LIN+IL+LSRIE+G + +    ++L + +   +      +  K +
Sbjct: 247 EILEKMESSAELLLVLINDILELSRIESGEFRIKCQWVNLKNELEFMLEHFYALSDAKGL 306

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           ++   +D  +  SVW D   + Q++ NLL NA+KFT   G V +    T  +   I ++D
Sbjct: 307 KLNVNLDIDAHHSVWVDPARILQIVFNLLGNAIKFTHA-GHVSLHAEVT-SQELIIEVED 364

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    I TV   F Q   +I     G GLGL I++ ++    G   + S+  +G  
Sbjct: 365 TGIGIDPSRIETVFNQFKQADDSITRRYGGSGLGLTISKHLVTLMNGSIRVESEKGKGSR 424

Query: 468 VIAILPNT 475
               LP +
Sbjct: 425 FKIKLPIS 432


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 17/319 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               I  +  L I+ A +          +     + N       +E    I   +  +  
Sbjct: 331 VFAMITDITPLRIAQANLKTAYDELEKRVVERTDELNKTNRLLTSE----IHIRKQTEKE 386

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + ++ AE+  LAKS FLA+MSHE+RTP+NAI+G + +I++  +    + T ++Y+  I
Sbjct: 387 IIKAKEAAEKATLAKSEFLANMSHEIRTPMNAIIGMTHLIKMTEL----SATQRDYLNKI 442

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S + LL +IN++LDLS+IEAG   +      L  ++ +   ++  RA EK +E    +
Sbjct: 443 DISAKSLLGIINDVLDLSKIEAGMLTVESVGFKLEQVLEQLTTIVSPRANEKKLEFLISV 502

Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGP 410
                 ++  D   M Q+++NL +NAVKFT  G  V  ++             ++KD+G 
Sbjct: 503 GKDVPPAIQGDPMRMAQILINLCNNAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGI 562

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI- 469
           GI  G+I  +   F Q   +      G GLGL + + ++   GG+    S+  +G     
Sbjct: 563 GIKPGKIQELFQPFTQADASTTRKYGGTGLGLSLCKQLVDLMGGEIGAESEFGKGSLFWF 622

Query: 470 -AILPNTRVL---NFIPED 484
               P  R       +P++
Sbjct: 623 EVTFPIYRDEVESATLPQE 641


>gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1480

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 135/265 (50%), Gaps = 8/265 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + E            + A+  + AKS FLA+MSHE+RTPLNA++GFSE+++ +++ P   
Sbjct: 1083 MTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSELLQNQSLSP--- 1139

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E   EY+  I+ +G  LL LIN+ILDLS+IEAG   +    I    +  E   +   +  
Sbjct: 1140 EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCGEINAIFTQKVM 1199

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----G 400
            EK +    ++   L  +W D + MRQV+LNL+ NAVKFT  GG V + V +         
Sbjct: 1200 EKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGG-VTLKVEFRREGPEAGT 1258

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I+I D G GI+      V   F Q +     A +G GLGL I+Q ++    G+ L+ S
Sbjct: 1259 LEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIRKMDGRLLLES 1318

Query: 461  KLREGVEVIAILPNTRVLNFIPEDN 485
            +   G     +L + R     PE  
Sbjct: 1319 EPGRGSCFTVVLEHVRYEEGAPEQA 1343


>gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
 gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
          Length = 580

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++ +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++  +     + 
Sbjct: 329 ITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAEDV----SE 384

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I ++   LL LIN+ILDLS+IEAG  E   + I +  ++ E     ++R  
Sbjct: 385 EERTEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQT 444

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ I          ++ D++ + QV+ N +SNA+KFT   G +               
Sbjct: 445 NANVAICAVTPLEGLLLYTDQRRVTQVLNNFISNAMKFTNT-GSITFGYEEPKDGYIRFF 503

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   ++  +   F +      S +QG GLGL I+Q+I+    G+  + S+L +
Sbjct: 504 VTDTGTGIPPEKVADIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVASELGK 559

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 560 GSTFWFTLPYEK 571


>gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 763

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/487 (21%), Positives = 192/487 (39%), Gaps = 31/487 (6%)

Query: 11  DVGLLISPTGDHLGLEYPS---KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
           DV  ++ P      +  P    + +F R               +  + ++++A +     
Sbjct: 15  DVDAVLPPASTRRFVAAPPLVPEPEFSRREGLSF---------LTFVAIVVMAGLAHLTG 65

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW------ 121
                 +  L T     A     ++  +    + +    R    +  +A  + W      
Sbjct: 66  APMFISVALLATGLAGLAMHLRARRSEHRTAALLDETTARSRAEIETLADRM-WEMQESD 124

Query: 122 ----TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
                L+  +       +       A  + A  +  +    L           V  +   
Sbjct: 125 ERFRGLIDALGDLVIHRDRDGYIVYANKVFADLVE-IDQRDLAGKTLAELGIEVGMVPDA 183

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
           A      L  +   +   +   +        +               I   + A+S    
Sbjct: 184 AFSDHECLSSTDVSISTPSGQRWFSWIELSVRDKDSGAVSHRAIARDITARKRAESSLIT 243

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+RAE  + AKSRFLA++SHE+RTP+N I+G + ++   ++ P      + Y+G +  S
Sbjct: 244 ARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADTSLSP----EQQTYVGAVSTS 299

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL LI ++LD S+IEAGR++     +S+ +I    I +L  RA  K+I +   ++P 
Sbjct: 300 ASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPD 359

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHV-TVGWTSGRGQYISIKDNGPGIAE 414
           +   + AD   +RQV+LNL+ NA+KFT  GG  V +      +      +I D GPG+ +
Sbjct: 360 VPQLITADPGKVRQVLLNLIGNAIKFTDSGGVLVSIARARTETSDRICFTIADTGPGLHD 419

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +   F Q          G GLGL I++ ++A  GG   + S+L +G E +  +P 
Sbjct: 420 ADLERIFEEFEQADGTSTRTHGGAGLGLAISRRLVAAMGGTISVSSRLGQGSEFVFEVPA 479

Query: 475 TRVLNFI 481
           T      
Sbjct: 480 TAATEAP 486


>gi|256842335|ref|ZP_05547838.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735942|gb|EEU49273.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 943

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  T            + D G GIAE
Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 724

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784

Query: 475 TRVLNF 480
            ++   
Sbjct: 785 GKIKES 790


>gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
          Length = 1105

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +LE          +  E+ N  +S FLA+MSHELRTPLN+I+  S+++  + +   + +
Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E I  I+++GQ LL LIN++LDLS++E+G+  L+       +++ +   M +  A+E
Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404
           KNI  F + D   S +  D   + Q++ N LSNA KFT+ G  +    +          S
Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFS 692

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E  I  +   F Q    I     G GLGL I++ +     G+  +RSK+ E
Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 753 GSTFFLKLP 761


>gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 2322

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 25/319 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1746 VGISLANAFLYRNASKVSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1805

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1806 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1861

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   +++ ++  + +D    +  V  D
Sbjct: 1862 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1921

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V             I+  + D G GI+  ++  + 
Sbjct: 1922 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 1981

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    VL+ 
Sbjct: 1982 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2037

Query: 481  IPED-------NHESTQYK 492
             P++       + +STQ K
Sbjct: 2038 APKNAVVKTPWSQDSTQEK 2056


>gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 916

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  + AKS+FLA+M HE+RTPLNA++G S +     +        + Y+  I  S + LL
Sbjct: 433 QAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDS----KQRGYLEKIGSSSRTLL 488

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           N+IN+ILD S++EAG+ EL ++ ++L +++     M   +AQEK IE   ++ P L   +
Sbjct: 489 NIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKKL 548

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEI 417
             D   + QV+ NL++NAVKFT   G V V +            +  ++D G GIA  ++
Sbjct: 549 VGDPLRLTQVLNNLIANAVKFTEK-GEVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQM 607

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             + T F Q   +      G GLGL I++ ++    G+  + S    G      +P    
Sbjct: 608 GKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVPLAVP 667

Query: 478 LNFIPEDNHESTQ 490
               P       +
Sbjct: 668 DAVNPVAQPREQE 680


>gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
          Length = 872

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +       ++AE+ N AKS FL+ MSHE+RTPLN I+G    +  E +   + E   + +
Sbjct: 347 QESLKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMV-TLARENINNKSKEI--DCV 403

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S +HLL LIN+ILD+S+IE+G+ E+        + V   + +   +A+EK I+  
Sbjct: 404 NKISASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSLFFSQAKEKGIKFK 463

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQYI--SIK 406
             +  ++   V  D     Q+I+NLLSNAVKFT  GG +   +++        +I   + 
Sbjct: 464 SVLIGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLKEEDNKVWIRFEVS 523

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +     +   F Q   ++     G GLGLPIA+      GG   ++S++ +G 
Sbjct: 524 DTGVGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLGGNISLKSEVGKGS 583

Query: 467 EVIAILPNTRVLNF 480
                LP TR+   
Sbjct: 584 TFTVDLPFTRIPEP 597


>gi|229068657|ref|ZP_04201955.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
 gi|228714404|gb|EEL66281.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
          Length = 709

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 264 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 323

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 324 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 382

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++ ++ + D K + Q+I NLLSNA KF
Sbjct: 383 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 442

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 443 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 501

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 502 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 544


>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 685

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ A   + AK+ FLA MSHE+RTPLN I+G + +          +   KEY+  I  S
Sbjct: 300 EKQSAVIASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQSG----PDGELKEYLLKIRSS 355

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             +LL +IN++LDLS+IEA + EL      + +++      ++   ++K +E    +D  
Sbjct: 356 STNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAMEQKGLEYQCHLDDD 415

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIA 413
           +   +W D   ++QV+LNL+SNAVKFTA  G+V + +       G   +  + D G GI+
Sbjct: 416 VPLKLWGDSLRLKQVLLNLMSNAVKFTAR-GKVGLRIHRQQDDDGDWLHFEVSDTGMGIS 474

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +   + Q + +I     G GLGL I + I     G     S+L EG      +P
Sbjct: 475 HEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCESRLGEGSRFHLRIP 534


>gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
 gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
          Length = 885

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 16/269 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ++E+ K      +++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITDMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIIGFSRIIAES----ENT 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY   +  + + LL LINEILDLS+IEAG  E S + + L  + +E       R  
Sbjct: 544 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
             ++E+  +       + +D+  + QVI NL+ NA KFT  G    ++ G+         
Sbjct: 604 S-DVELIFEPSDEDIRIDSDKNRIFQVISNLIGNAFKFTTHGS---ISYGYHQEGENIIF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  +I  V   F +      +  QG GLGL I ++I+   GG   + S+L 
Sbjct: 660 HVTDTGTGIAPEKIGKVFERFVKA----NNFAQGTGLGLAICKTIIERLGGTISVTSELE 715

Query: 464 EGVEVIAILPNTRVLN---FIPEDNHEST 489
           +G      LP          +PE   E +
Sbjct: 716 KGTTFTFNLPAKIANEEEKEMPETVLEES 744


>gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 2453

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 139/270 (51%), Gaps = 10/270 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I      +    E R+ AE  N +KS FLA+MSHE+RTP+ AI+G+ ++I+      +  
Sbjct: 2051 ITSQRQFEQSLKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDELIDHKIAT 2110

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 Y+  + R+G+ LL++IN+ILDLS+IEAG+ ++     S   ++ +   ++ +RA 
Sbjct: 2111 A----YLSTVRRNGEFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVCSIMDVRAA 2166

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            E  +E+       +   + +D K ++Q+++NL+ NA+KFT   G V + V     + Q+I
Sbjct: 2167 ENRLELDIFYYGKIPAEIESDPKRLKQILINLVGNAIKFTMK-GSVKIFVSCNDQQLQFI 2225

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +   F QG   +     G GLGL I+Q +    GG+  + S+  
Sbjct: 2226 IV-DTGIGITTRQQKRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEICVESEKD 2284

Query: 464  EGVEVIAILP---NTRVLNFIPEDNHESTQ 490
            +G +    +     + V    P  + E +Q
Sbjct: 2285 KGSKFTVTIATGDISEVKMIQPRASTEPSQ 2314


>gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
 gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
          Length = 1317

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 11/262 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L  +   D L  E E+A       ++RA+  + AKS FLA+MSHELRTP+NA++G  E++
Sbjct: 745 LVARDINDRLKKEHELAT-----AKERADIASEAKSHFLANMSHELRTPMNAVIGLLELV 799

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +  ++ P+      ++I     +   LL ++N+ILD S+IEA    + +    L  ++ E
Sbjct: 800 KKTSLSPV----QSDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDE 855

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             ++L      K+IE+   ID +L   +  D   ++Q++LNL SNA+KFT   G V +++
Sbjct: 856 MALILSASLTTKDIEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQK-GHVLISI 914

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              S     + ++D+G G+   ++  + T F Q   +I     G GLGL I + ++    
Sbjct: 915 KMLSENEISMCVEDSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMD 974

Query: 454 GQFLIRSKLREGVEVIAILPNT 475
           G   + S L +G      LP  
Sbjct: 975 GSIRVESHLGKGTSFHVQLPLE 996


>gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 923

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 157/353 (44%), Gaps = 20/353 (5%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
            +          ++   A  ++A++   L  F +         P+   +    I  +   
Sbjct: 304 AIAHAEDRKTRASLMLLAMAVVAVAGILLVGFWIQTVRRRLSTPMK--MLVDTIGRLSRQ 361

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           + +L             +   L +  V  L  Q     L   LE A+ +  E   RA E 
Sbjct: 362 EFALPVPATGYPDEMGAMAGALEELRVGALKAQ----HLQRLLEKAQEVEIE---RANEV 414

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AK+ FLA+MSHE+RTPLN ILG +++++   +    +   ++++  + +SG  LL ++
Sbjct: 415 SRAKTDFLATMSHEIRTPLNGILGMAQLLDDSPL----SAQQRQWLDAVAQSGSLLLAIL 470

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILDLS+IEAGR EL   A S  +++R     +  +A  K +    +     + +  D 
Sbjct: 471 NDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEYPALPARLIGDP 530

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPT 419
             + QV+LNL+ NAVKFT   G V ++V W               + D G GIA   +P 
Sbjct: 531 AKISQVLLNLVGNAVKFTHS-GEVVLSVNWAPDEQRPDRGRMEFRVTDTGIGIARQAVPH 589

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           V   F Q   +I     G GLGL I + I+   GG+  + S L  G     +L
Sbjct: 590 VFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGCGSVFTVVL 642


>gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 1131

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 163/339 (48%), Gaps = 9/339 (2%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +++   +S+    +   A   S  P +   +   I         +  +    +S    + 
Sbjct: 573 MIVLAIVSSFMAAIFMIA--YSQIPALAPDNMHTITGGMFKAFVMLLIPVGIISGLFVLA 630

Query: 205 YHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +  L    +     I+  E      ++ +K AE  N AKSR+LA +SHELRTP
Sbjct: 631 RNTSRNAITELKAHMQLLTQEISAHEKTSRKLEQAKKSAETANNAKSRYLAGLSHELRTP 690

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG+++++  +      +   +EY   + R+G+HL +L+  +L++S+IEAGR EL  
Sbjct: 691 LNVLLGYAQLLSDDR---KLDHQTREYAHILRRNGKHLSDLLEGLLEISKIEAGRLELQR 747

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKF 382
              +L  ++ E   M  + A +K +E       +L    A D++ +RQ+++NLL+NA+K+
Sbjct: 748 VEFNLATMLNELAEMFAMEASQKGLEFEYLPCVNLPVYIATDKQRLRQILINLLNNAIKY 807

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G+V   V +   +    S++D G G++E +I  +   F +       A QG GLGL
Sbjct: 808 TRE-GKVIFRVTYR-NQVARFSVQDTGIGLSEHDIQQIFNPFERIQTHNTRAIQGTGLGL 865

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I+ ++    GG    +S+   G      +  + V + +
Sbjct: 866 TISHALANLMGGDISCQSQPDVGSNFTLTMMMSAVESPV 904


>gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+  ++++SHELRTPL +I+GF+E++       L+ E  ++Y+G IH+    L +
Sbjct: 418 EVDRLKTELVSTVSHELRTPLTSIIGFTELLR---FRKLSAERSEKYLGMIHQETLRLED 474

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI+ +LD+ R+E+G+         L  I+ + I + Q  +Q  +I      D     V+ 
Sbjct: 475 LISNLLDVQRMESGQQTYHNEPERLSAILEQAIAVHQGSSQHHHITFDCTED---VYVYG 531

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+ +NLL NAVK++  GG ++V V         ISI+D+G GI +  +P +   
Sbjct: 532 DRTRLNQLFMNLLHNAVKYSPRGGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDK 591

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +      G GLGL I + I   HGG     S + +G      LP 
Sbjct: 592 FYRVDNSASRKIGGTGLGLAICKEIAEGHGGTIHATSNIGKGSMFTVSLPK 642


>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 288

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 148/256 (57%), Gaps = 2/256 (0%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + ++      +  A+  +  KS FLA+MSHELRTPLNAI+GFSE I+        +E  
Sbjct: 28  RQRSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQHIAASGKPSEKT 87

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            EY   I  +G+HLLN+I++ILD+++IE+G + L+     + ++V  CI++++ R +EK 
Sbjct: 88  GEYATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDACIVLIEPRIREKK 147

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
             +  K DPSL  V  D + ++QV++NLLSNA KFT  GGR+ +    T   G  I++ D
Sbjct: 148 QVLEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVAD 207

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+ + +I   LT FGQ   +     +G GLGLPIA ++   HGG+F I S+  +G  
Sbjct: 208 TGIGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGEFQIFSEPGKGTT 267

Query: 468 VIAILPNTRVLNFIPE 483
           V   LP        P+
Sbjct: 268 VFFTLPPA--APARPQ 281


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 131/255 (51%), Gaps = 7/255 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A++     R+RAE+ ++AKSRFLA++SHE+RTP+N I+G + ++    +   
Sbjct: 212 RDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSS- 270

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+  I  S   LL LI ++LD S+IEAGR EL    ++  +++   I ++ +R
Sbjct: 271 ---EQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVR 327

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR- 399
           A  K I +   I P++  ++ AD   +RQ++LNLL NA+KFT  GG +  VT     G  
Sbjct: 328 AFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAP 387

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D GPGI +  +  +   F Q   +      G GLGL I + ++    G   + 
Sbjct: 388 KLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVD 447

Query: 460 SKLREGVEVIAILPN 474
           S   EG      +P 
Sbjct: 448 SAPGEGATFTVYIPL 462


>gi|301312222|ref|ZP_07218139.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
 gi|300829644|gb|EFK60297.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
          Length = 943

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  T            + D G GIAE
Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 724

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784

Query: 475 TRVLNF 480
            ++   
Sbjct: 785 GKIKES 790


>gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
 gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
          Length = 911

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 280

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 337 DVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 396

Query: 366 KGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             ++Q+I NLL NA+KFT  G     V V    T      + I D G GI+E +   +  
Sbjct: 397 MRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTGIGISESQQSQLFQ 456

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG+    S++  G      L
Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGSTFRFHL 506


>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
 gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 2071

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 10/282 (3%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
             +  +     +        +        EL+    L  + ++ A+  N AK +FLA MSH
Sbjct: 1504 LYASLEESRNQIAGWSQFLEQTVAARTRELQETNELLKQAKEAADAANRAKGKFLAVMSH 1563

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RT LN ++G +E++    +    N   +EY+  +      LL+++N++LD SRIE GR
Sbjct: 1564 EIRTTLNGLIGMAELLLDTPL----NGEQQEYVSAVRECADSLLSVVNDLLDFSRIEEGR 1619

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
              L   + +   +V + + +++  A++K++ +   I P +  ++  D   +RQV+LNLL 
Sbjct: 1620 LVLETVSFNPASLVEKSVALVEPGARQKSLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLG 1679

Query: 378  NAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NAVKFT   G + ++                ++D G GI E     +   F Q   +   
Sbjct: 1680 NAVKFTER-GEISLSAFVEGREPDSLTVRFEVQDTGIGIPEEARSMLFRPFTQAGPSSAG 1738

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               G GLGL I + ++   GG+    S+   G      +P  
Sbjct: 1739 RYGGAGLGLSICKRLVELMGGRIGFESEEGRGSTFWFSVPFA 1780


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +   +AL        +  +  P V+        +  V  +    +    L  +       
Sbjct: 71  SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 130

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              +V   +      D+ A +E A+ + DE + RAE  N+AKSRFLA++SHELRTPLN I
Sbjct: 131 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 189

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++    + P      + Y+     SG+ LL L++ ILD SRIEAGR +L+     
Sbjct: 190 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 245

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           +  +V   + +L  RAQ+K +EI   I   L+++   D   +RQ+++NL  NA+KFT  G
Sbjct: 246 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAG 305

Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V V++  +      G  ++++D GPGI E  IP +   F QG  +     +G GLGL 
Sbjct: 306 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 362

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I + ++    G    RS +  G     +LP       +  +  
Sbjct: 363 ITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGAMSPETP 405


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +   +AL        +  +  P V+        +  V  +    +    L  +       
Sbjct: 81  SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 140

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              +V   +      D+ A +E A+ + DE + RAE  N+AKSRFLA++SHELRTPLN I
Sbjct: 141 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 199

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++    + P      + Y+     SG+ LL L++ ILD SRIEAGR +L+     
Sbjct: 200 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 255

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           +  +V   + +L  RAQ+K +EI   I   L+++   D   +RQ+++NL  NA+KFT  G
Sbjct: 256 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAG 315

Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V V++  +      G  ++++D GPGI E  IP +   F QG  +     +G GLGL 
Sbjct: 316 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 372

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I + ++    G    RS +  G     +LP       +  +  
Sbjct: 373 ITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGAMSPETP 415


>gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 483

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAEL 228
           +  +++       ++  ++ G L       +Y+++ + K   K+     E    +    +
Sbjct: 157 IAGINSTIRNIREIVQWAIIGGLIIVTILVSYLSWSISKPLKKVEEATNEIALGNYSKRV 216

Query: 229 EVAKSLSDET-------RKRAEEEN----------LAKSRFLASMSHELRTPLNAILGFS 271
           E     SDE         + AE+ N            ++ F+A++SHELRTPL A+ GF 
Sbjct: 217 EHDNQFSDEISELIKSFNRMAEKLNTIENERGTLEKRRNDFIANISHELRTPLTAMKGFL 276

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++   +   + E+ ++Y   ++R  ++L +L+N+++DL ++E     L    + L +I
Sbjct: 277 EALQDGLV--KDTESQQKYYAIMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEI 334

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +R+  + LQ   + +N +I      ++  V  D   + Q+  N++ NA KFT   G + +
Sbjct: 335 IRKVALNLQPSIESRNNDIIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFT-ENGSITI 393

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +         + I DNG GI   ++  +   F +     +  E+G GLGL I + ++  
Sbjct: 394 KLEEHCKDNVCVKISDNGIGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQL 453

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
           H G+  + S+L  G       P  R
Sbjct: 454 HHGEITVESELGVGTTFTIFFPTQR 478


>gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 785

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G + +    T  +   + 
Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I Q I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLN 479
           G      +P      
Sbjct: 630 GSTFYFTIPYEEAGE 644


>gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
 gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
          Length = 883

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHIGEGSTFTVYIPNLPNGLHDIQLSNLEVA 735

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 736 ATVAEVIPAEVVEET 750


>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1165

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/416 (22%), Positives = 159/416 (38%), Gaps = 14/416 (3%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
                 P      ++ + V   N  L  ++        E    R  LL           +
Sbjct: 266 ALQVGWPYVLGLFVLIVFVLIWNRRLTVQIAERQRAEAEARRQRSTLLALIN------AI 319

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
              +        Y     +   +   S   +                   L  +A+ S  
Sbjct: 320 PDPIWFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRM 379

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            L+       A     F       F  +   L         I   +  +      +  AE
Sbjct: 380 PLETETWLTHADGRRVFYDTLRAAFYDDRGQLLGLVGTGRDITVRKEVEDAMARAKALAE 439

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +   AK+ FLA+MSHE+RTP+NAI+G S +     + P      ++Y+  I ++GQHLL 
Sbjct: 440 QAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDLDP----RQRDYLNKIQQAGQHLLG 495

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362
           +IN+ILD S+IEAG+  +      L  ++     ++  +A  K +E+  + D  +  V  
Sbjct: 496 VINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQVPCVLL 555

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPT 419
            D   + Q+++N  +NAVKFT  G   V + +    G+  +   S++D G G++  +   
Sbjct: 556 GDPLRLGQILINYANNAVKFTEHGEVEVSIELEKRDGKQVWLLFSVRDTGIGLSPAQQAR 615

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  SF Q   +      G GLGL I + +    GG+  + S+L  G      LP  
Sbjct: 616 LFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLPFA 671


>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1258

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 128/254 (50%), Gaps = 10/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E + A +L  +   RAE  + AK+ FLA+MSHE+RTP+NAI+G S +     +   
Sbjct: 587 RDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTEL--- 643

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   ++Y+  I +SGQHLL +IN+ILD S+IEAG+  + ++A+ L  ++     ++  +
Sbjct: 644 -NPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEK 702

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
              K +E+   +   +   +  D   + Q+++N  +NAVKFT   G + V V      G 
Sbjct: 703 TIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTET-GEIVVAVRLAEDLGE 761

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  ++D G G++  ++  +  SF Q   +      G GLGL I++ +     G+  
Sbjct: 762 AVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVG 821

Query: 458 IRSKLREGVEVIAI 471
           + S+   G      
Sbjct: 822 VESQPGRGSTFWFT 835


>gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
 gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
          Length = 931

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 155/363 (42%), Gaps = 36/363 (9%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +  + +++L  F       L      + ++   I     ++  LA   A          
Sbjct: 396 AVAVVELASLRPFTDAQIKLLEKVIETLGIAITNISGRMEIERLLAESQAQTEELQAQAE 455

Query: 205 YHLFKSNV-----KILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEE------- 244
               +S       + +  Q+E+  +I E         E+        ++  EE       
Sbjct: 456 ELQSQSEELQAQSEEMQSQSEELRMINEQLEERSRDAEMKSEELQAAKEELEEKAKQLSL 515

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  KS FLA+MSHELRTPLN+IL  SE++  +    +  E  KE+   IH SGQ LL L
Sbjct: 516 SSKYKSEFLANMSHELRTPLNSILLLSEMLAEDP-DQMLTEEQKEFSKVIHTSGQDLLTL 574

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363
           IN+ILDLS++E G+ E+S   +++ ++ +         A+ KN+E        +  V   
Sbjct: 575 INDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEFTVSSSEEVPPVFHT 634

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------------GRGQYISIKDNGP 410
           DE+ ++Q++ NLLSNA KFT   G V VT    +                  I++ D G 
Sbjct: 635 DEQRLQQIVKNLLSNAFKFTEE-GSVAVTFEKAAQSDFFGLPLSAYTDDWLKITVLDTGI 693

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   +   +  +F Q   A      G GLGL I++      GG   + S+  +G     
Sbjct: 694 GIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICKVESEEGKGSRFTL 753

Query: 471 ILP 473
           ++P
Sbjct: 754 VIP 756


>gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 565

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 7/232 (3%)

Query: 243 EEENL--AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           E++NL   +  F+A++SHELRTPL  I  ++E +  + +   + E    ++  I +    
Sbjct: 337 EQQNLDNMRKEFVANVSHELRTPLTTIKSYTETLLNDGV---DEEYRNRFLSIIDKEVDR 393

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++L LS++++   +L+    +L + +   +  +++ AQ+KN ++         +
Sbjct: 394 MTRLVKDLLLLSKMDSNG-KLNLEETNLNEFIENILYKIKIEAQKKNQKLTFCAGEEKRN 452

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   M QV+LN++SNA+K+T +GG V V   +      YI+I DNG GI + ++P +
Sbjct: 453 INIDRDKMEQVLLNVVSNAIKYTNLGGYVRVFTKY-DDDYAYITISDNGIGIPKKDLPRI 511

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +          G GLGL IA+ I+  HGG+  I S++  G  V   L
Sbjct: 512 FERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEVGIGTIVYIKL 563


>gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 807

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 788 GSCFWFTYP 796


>gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1203

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E ++ AE  NL KS FLA+MSHE+RT +NAI+G  ++ +  ++ P   
Sbjct: 667 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRTSLTP--- 723

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+     S   LL +IN+ILD S+IEAG+ EL      L  ++   + +  L+AQ
Sbjct: 724 -QQKDYLEKAGFSAHSLLRIINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQ 782

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+      +   +   D   + QV++N+LSNAVKFT   G + +       R   I
Sbjct: 783 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 841

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI++ +  T+  +F Q   +      G GLGL I++ +++  GG   + 
Sbjct: 842 TLKFWVRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVE 901

Query: 460 SKLREGVEVIAIL 472
           S++  G      +
Sbjct: 902 SEMGVGSTFSFTI 914


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1293

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 25/331 (7%)

Query: 169 PVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
           P++  L    ++   ++  + +A                L  +   IL    ++      
Sbjct: 655 PIIEFLGMPLMLGNDLVGTVGVANRPGGYPPDLLNYLQPLLHTAAGILKALRQRQS---- 710

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            ++A+      + +AEE N AKS FLA+MSHE+RTP+NA++G +E++    + P      
Sbjct: 711 QQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDTPLTP----EQ 766

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E+   I  SG  LL LIN+ILDLS+IE+GR EL E  + L  ++  C+ ++  RA  K 
Sbjct: 767 REFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKG 826

Query: 348 IEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399
           +E+  ++D +L  V   D+  +RQ++ NLLSNAVK+T   G V +T  W +G        
Sbjct: 827 LELAARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDT-GEVVLTASWHAGDLSAPLDS 885

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   I+++D+G GI + + P +  +F Q   A      G GLGL I + ++   GG
Sbjct: 886 PKRSPRLEIAVEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGG 945

Query: 455 QFLIRSKLREGVEVIAIL--PNTRVLNFIPE 483
              + ++   G   +  +  P        P+
Sbjct: 946 TIHVENRPGGGSRFVFNIIAPLEFQAPSDPK 976


>gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 608

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 22/253 (8%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A++SHEL+TP+ A+ GF+E +    +   + ET + ++  I+  
Sbjct: 359 AIRRLE---RMRSEFVANVSHELKTPVAAVKGFAETLLGGAV--NDEETARSFLQIIYDE 413

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  LI +IL+LS+IE+ R  L  S + +     + + +++  A  K I +  K D  
Sbjct: 414 SERLNRLIGDILELSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDE 473

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQ 401
           +  V ADE  +RQ+++NLLSN + +T  GG+V VTV                        
Sbjct: 474 I-YVEADEDRLRQIMMNLLSNGINYTPEGGKVTVTVEPVWPASTGRSLLTDEERDDYDRI 532

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I+IKD G GI + ++P +   F +   A   +  G GLGL I + ++  H G   + S+
Sbjct: 533 RITIKDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVEMHNGSIAVESE 592

Query: 462 LREGVEVIAILPN 474
           +  G + I  LP 
Sbjct: 593 VGVGTKFIIELPV 605


>gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 683

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 143/254 (56%), Gaps = 7/254 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A+      R  AE  N AKS FL+SMSHELRTP+NAILGFS+++ELE +   
Sbjct: 411 EDITERKAAELSLISARYEAERANKAKSEFLSSMSHELRTPMNAILGFSQLLELEGL--- 467

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++ +  Y+  I  +G HLL LI+E+LDL++IE+GR +L    I +  +V ECI +++++
Sbjct: 468 -DDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRIDLQPEWIDICTVVEECINLVKIQ 526

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
           A  ++I++          ++ D    +Q+ILNL+ NA+K+   GG VH+ +  +      
Sbjct: 527 ADGQDIKLTHSGMADKV-LYTDRIRFKQIILNLIHNAIKYNRKGGWVHIELKNSDNPGYL 585

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I + D+G GIA   +  +   F +   A   A +G G+GL + + I+   GG+  + S+
Sbjct: 586 KIIVIDSGIGIAANRLTQLFQPFNRLDAAGS-AIEGTGIGLSLTRRIIEMMGGRIGVESE 644

Query: 462 LREGVEVIAILPNT 475
           L  G      LP  
Sbjct: 645 LGVGSTFWFELPAR 658


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 159/401 (39%), Gaps = 17/401 (4%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFMLPYAVFLS 166
                      W++  +V         +   +       L    ++A ++ ++   ++L 
Sbjct: 362 FFAYHPIPVTGWSVGIVVPVREVIAPAVATSEKIEQSRALTDAELNARADALVQTFLWLL 421

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDLI 225
           F  +   +    + +  +     A    +       + + +   S  +I       + + 
Sbjct: 422 FGIMATLIPVALVFARSISRPIQALAEGSRRVGAGELDHRIQVDSGDEIQDLALTFNQMA 481

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +L+      +   +  ++ +  KS+F++  SHELRTPL AI G+ ++I     G ++  
Sbjct: 482 EDLKNKIDEIETANQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREGRGGEIS-A 540

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +  +  + R+   L  +++E+LD+SRIE  +  L    +SL  IV E     Q   + 
Sbjct: 541 AQRTMLDTVSRNATRLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITEEQQPYLES 600

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           +   +  +I  +L  V  D   + QV++NLL NA+K+T  GGR+H+ V     R  ++ +
Sbjct: 601 RRHALTLEIADALPRVDGDPDRISQVVINLLGNAIKYTPDGGRIHIRVYPEPDR-VHLEV 659

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-------QGVGLGLPIAQSIMANHGGQFLI 458
            D G GI   +I  +   F       K           G GLGL I Q I+  H G+  +
Sbjct: 660 TDTGIGIKPEDIGKLFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQAHAGKIWV 719

Query: 459 RSKLREGVEVIAILPNT----RVLNFIPEDNHESTQYKCYA 495
            S+   G       P      +     P     S + +  A
Sbjct: 720 DSEYGRGSTFHVQWPIAHEQSQSRETPPAQTQRSEKAQSAA 760


>gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96]
 gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae
           Ep1/96]
          Length = 909

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  ++RA
Sbjct: 227 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+  + N T ++Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  L      L   + E +++L   A EK +E+   I   +    
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             D   M+Q+I+NLL NA+KFT   G + + V   +         + I D G GI+E + 
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F Q   +I     G GLGL I Q ++   GG+    S+L  G      +
Sbjct: 462 SKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
          Length = 1153

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 181/458 (39%), Gaps = 27/458 (5%)

Query: 47  RVSPILPLFVLL-VANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIK 99
             +P + L   + V+ +  W T+   +        W+   +   +       +  + D+ 
Sbjct: 484 AFAPFIALLTAMGVSPLLAWLTRGRYYVARESRSEWAPGQMVACSVC---DNRFESEDMA 540

Query: 100 IGEVYVWRIWLLVGQIAI-----------GLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
               Y   I  L   +                     L      +       + A  L+ 
Sbjct: 541 HCPAYEAPICSLCCTLDSRCHDRCKSGSRAAEQVGAALGVVLPASLASHVNSRVAHYLVT 600

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +        ++   V+     +  A           +   LA + A    +    +    
Sbjct: 601 VVSLLALLAVIFGVVYDQESTLRGAQGVALQGPFLKVFALLALVAAVGAWWMVLGSESRH 660

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +           I   +   +     ++ AE  N AK+R++A M+HELRTPLN+IL
Sbjct: 661 LAQEESNRQNQLLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSIL 720

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+++++  + +        +E +  I RSG+HL+ LI+ +LDL+RIEAGR  L  +A+ L
Sbjct: 721 GYAQILLKDGVLSAAP---REAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPL 777

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              + E + M+Q +AQ K +         +   V AD K +RQ+++NLLSNAV+FT   G
Sbjct: 778 PAFLDELVRMVQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDE-G 836

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V + V           + D G GIA  +   +   F +G+   +  E G GLGL I   
Sbjct: 837 TVTLHVDCRRE-VVRFDVVDTGIGIAPQDQQRIFMPFERGAAGRRRGEPGTGLGLTITAL 895

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           + +  GG+  + S    G      L    V +  P+  
Sbjct: 896 LTSLMGGELGLVSAPGRGSTFSVRLYLREVSDPGPQAE 933


>gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1187

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +   + +   +       +  L   +    +  +  R  A+  N +KS FLA+MSHE
Sbjct: 537 YVAVQEDITEKRHQGEELDQHRHHLEELVASRTAELESARTSADAANQSKSAFLANMSHE 596

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G + ++   T  P + ++ +  +  I  +  HLL++IN+ILDLS+IEAGR 
Sbjct: 597 IRTPMNAIIGLTYLLRQNT--PTSEQSVR--LDKIDAAALHLLSIINDILDLSKIEAGRL 652

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL ++  SL  ++     ++  +++ K + I          +  D   +RQ +LN   NA
Sbjct: 653 ELEQTDFSLAAVLDHISSLITDQSRAKGLTIEMDNGDVPLWLRGDPTRLRQAMLNYAGNA 712

Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           VKFT   G + +                 ++D G GIA   +PT+   F Q  I+     
Sbjct: 713 VKFTER-GTIWLRARLLKETDAGLLVRFEVQDTGIGIAAENLPTLFEVFAQADISTTRKY 771

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            G GLGL I + +    GG+  + S L +G      +   R    IP + 
Sbjct: 772 GGTGLGLAITRRLANIMGGEVGVESALGQGSTFWFTVRLQRGHGVIPTEA 821


>gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 633

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  A  +    E   A S   +TR+ AE  N AKS FLA MSHELRTP+N 
Sbjct: 223 LGNLARHINNLAAGLELASREQHQAMSQLIQTREEAERANKAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   M     +   EY      S +HLL +IN+ILD SRIE    EL     
Sbjct: 283 VLGMLQLLETTQM----TQEQSEYAALASESTEHLLKVINDILDFSRIERSALELEHIPF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++       Q  A ++ +++  ++ P +    V  D   +RQ+++NL+ NA+KFT 
Sbjct: 339 NLAELITSSAQAFQHSALQRGLDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G + +   W +   + +    +++D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 399 Q-GSITIEPQWQALDHELLWFTCAVRDSGIGISPASLELMFDAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           GLPIA+++    GG    +S+   G      +P       +P
Sbjct: 458 GLPIARTLAERMGGTLRAQSEEGRGSVFTLEIPLALFQQSLP 499


>gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 977

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
               +     I   + +        +  +  L   +        + R  AE    +K  F
Sbjct: 523 ADGTVIGVLGIARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKGEF 582

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+NA+LG + ++E + +     +   E    IHRSGQ LL++IN+ILD S
Sbjct: 583 LANMSHEIRTPMNAVLGLAYLLERQPL----PDEAHELARQIHRSGQSLLHIINDILDFS 638

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           +IE+GR E+      L +++   + ++   A +K I++  +    L S +  D   + Q+
Sbjct: 639 KIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLESSLVGDPLRLGQI 698

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++NL SNAVKFT+  G+V V V   +          +++D G GI       +   F Q 
Sbjct: 699 LINLTSNAVKFTSD-GQVEVRVESIARSHTEVTLRFTVRDTGIGIDPETQAHLFQPFTQA 757

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +      G GLGL I + +    GG+  + S   EG      L
Sbjct: 758 DASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLEL 802


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 11/388 (2%)

Query: 94   MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
                +   ++        V  +   +   +  L   G     +    +   +   + +  
Sbjct: 823  RQRRLAEEQLRTSEHRSRV--LLNAIPDMMFRLGLDGRLLDYFGNPEQRLYVPPEIFLGR 880

Query: 154  LSNFMLPYAVFLS-----FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYH 206
            + N +LP  V                + + ++ +    +S    L           I   
Sbjct: 881  MLNEILPPDVTAQWNNAILAAPQGLQTFEYVLLIDGEPVSFEARLVLNEDEHEVVAIVRD 940

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            +            E+  L   +           +       AK  FLA+MSHELRTPLNA
Sbjct: 941  ITARKQMERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNA 1000

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            IL  SE +  +  GPL NE     + +I  SG+HLL LIN+ILDLS+IEAGR +L    I
Sbjct: 1001 ILALSEGMLEQLRGPL-NERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQI 1059

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
             + D+    +I ++ +A +K  +I    + S    +AD++ ++Q+++NLL+NAVKFT +G
Sbjct: 1060 LVSDVCAASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVG 1119

Query: 387  GRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G++ + V   + +G   I++ D G GI++ E+  +   F Q    +    +G GLGL + 
Sbjct: 1120 GQIDLIVKADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALV 1179

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILP 473
            + +   HGG   + S    G     +LP
Sbjct: 1180 RRLAELHGGSVSLESTPGVGSRFTILLP 1207


>gi|83644488|ref|YP_432923.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83632531|gb|ABC28498.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 599

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 197/485 (40%), Gaps = 27/485 (5%)

Query: 4   SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63
            +++K KD   L             +  +F+R  +   V+   + +      V L+  I 
Sbjct: 2   RQEHKAKDSSRL-----------GTAPEEFERAHLIESVKIRCQQTLPAVQGVFLIMAIF 50

Query: 64  TWFTQ----NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI--GEVYVWRIWLLVGQIAI 117
            +            +W     A     L + +++M     +   E+      LL   +  
Sbjct: 51  LFMLWDQAPLSRILLWVGPVAAAQLLRLQISRQIMRQLDSMIFQEILRSDRRLLRSSLIN 110

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
                          T         A  L    + A+ N    Y  FL   P+++     
Sbjct: 111 QALVGTGIWTVGAVETDNVAFFMTLAISLY--GVGAMVNLASDYRSFLLSIPLLMGQPIL 168

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                 V ++ +A  LAT             ++  + ++ + EK+ L+ ++E  +  ++E
Sbjct: 169 YWSLQGVDELRIAAPLATLTLLMISSVRRSSRTFAESVAMRFEKNALLNKVEAERKKAEE 228

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
               A+E N AK+ F+A+ SH+LR PL A+   ++ +  + +G    ET +E +    ++
Sbjct: 229 ALAVAQEANKAKTYFMAAASHDLRQPLYAVSLLTDTLSYQPLG----ETAQEIVSKQRQA 284

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  L N +LDLSR EAG+++ +  A+SL +++R      Q   Q K +        +
Sbjct: 285 IEVLRTLFNNLLDLSRFEAGKFQPNMKALSLDEVMRPLEAEFQPLCQAKGLTWRCSY--T 342

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+++D + + +++ NL+SNA+++T   G V V      GR    +I D GPGI   + 
Sbjct: 343 RVSLYSDLELLSRLLNNLISNAIRYTHK-GEVSVEAT-VEGRQVAFTISDTGPGIERDDQ 400

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q +   ++ ++G+G+GL I + I         ++S   +G       P    
Sbjct: 401 VRIFEDFVQLNNPSRNRDKGIGMGLAIVRRINELLDAGLTVQSSPGKGSRFSFYAPLAEY 460

Query: 478 LNFIP 482
               P
Sbjct: 461 ACLAP 465


>gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 773

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 10/265 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  L    ++  +  EL+      +  ++ AE  N AKS+FLA+MSHE+RTP+N I G  
Sbjct: 362 MGTLEDITDRKIIEEELKEKYKQLELLKEEAENANKAKSQFLANMSHEIRTPMNGIFGVV 421

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++E   +G        +YI  +  S   L  +IN+ILD+S+IE+G ++L+    +L ++
Sbjct: 422 QLLESTDVGA----EQNKYINMLKESTHTLAGIINDILDISKIESGTFKLNNEPFNLTEM 477

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +      L +    K +E+   +DP++   V  DE  ++Q++ NL+SNAVK+T   G V 
Sbjct: 478 ISSIYHGLLVDGNAKGLEVGYYLDPNINPQVIGDELKLKQILTNLISNAVKYTEQ-GFVS 536

Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             V   S          ++KD+G GI +G    +   F Q   + +   QG GLGL I++
Sbjct: 537 FRVNRISFDEHTEKIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAISK 596

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
           ++     G     SKL EG      
Sbjct: 597 NLALLMQGDISFESKLGEGSIFTFT 621


>gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 801

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +       + ++ AE  N AK  FLA MSHE+RTP+N +LG  EV++  T+    +
Sbjct: 382 LTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVLQESTL----D 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +E +  + ++G++LL LIN+ILDLS+++AG  +L   A++L ++++E + ++ + A 
Sbjct: 438 QEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKEVVGLVAVLAS 497

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EKN+ +  +ID S+   + ADE  +RQ++ NLL NA+KFT   G V++T+     +   +
Sbjct: 498 EKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEK-GSVNITLSMRDPQQLAL 556

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I+D G G+       +   F Q    I     G GLGL +++ ++    GQ  + S+L 
Sbjct: 557 VIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMHGQIRMDSQLG 616

Query: 464 EGVEVIAILPNTRVLNFIPEDNH 486
            G +   +LP  R      +   
Sbjct: 617 CGTQFEILLPVERTQPPRSDQPQ 639


>gi|320589282|gb|EFX01744.1| two-component osmosensing histidine kinase [Grosmannia clavigera
           kw1407]
          Length = 1307

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 705 ELKKKINLMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 764

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 765 DTDLTLY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 820

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++   +D S+   V  D   +RQ+ILNL+ NA+KFT   G+V +T+ 
Sbjct: 821 LKTLAVKANEKFLDLTFHVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTER-GKVSLTIR 879

Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   +        + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 880 KAGQVDCSSGEYAIEFVVTDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 939

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           +++  GG   + S+  +G      
Sbjct: 940 LVSLMGGDVWVESEYGKGSSFYFT 963


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    +++ + + + I      A+EKNI + Q I  +      
Sbjct: 418 LVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISLTEEEFMF 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T+  G V + V         I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I ++I+  H G   + S++ +G      +P   
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIPTKP 589


>gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 2403

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 20/304 (6%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEENLA 248
            ++ + +F       +  +N  ++  Q        E E  AK    E        E+   A
Sbjct: 1826 ISLSNAFLFRRVRKVSATNAAMVESQKRALAAAREAEQKAKIAEAEANHNVKLKEDAARA 1885

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA++SH+LRTP+N ++G SE+++    G   ++    Y+  I      LL LIN+I
Sbjct: 1886 KSVFLANVSHDLRTPMNGVIGLSELLK----GTKLDKEQDNYVESIRVCADTLLTLINDI 1941

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEK 366
            LD S++EAG+ ++S   +SL + + E +  L+   +++ +E  + +D  P    V  D  
Sbjct: 1942 LDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRGLETIEDLDMVPEDLVVMGDPV 2001

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLT 422
             + Q+ +NLLSN+ KFT   G V VT          +    S+ D G GI E     +  
Sbjct: 2002 RLHQIFMNLLSNSYKFTPK-GHVKVTAMVVREGKGRVRLECSVSDTGIGIPEEHKSRLFR 2060

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F Q   +   +  G GLGL I ++I+    GG   + S    G  V   L    V    
Sbjct: 2061 PFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGTTVTFQL----VFQRA 2116

Query: 482  PEDN 485
            P+D+
Sbjct: 2117 PKDS 2120


>gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 896

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 758

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 10/301 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK----RAEEENLAKSRFL 253
           +F   I  HL    +      A+  +     E     S +  +     ++  N +KS FL
Sbjct: 332 AFLGQIGEHLA-VAIYQAQLYAQVQEQKNTFEQRVIESTQALRDTLIASQAANHSKSEFL 390

Query: 254 ASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            +MSHELRTPL  I+G S  +    +    L  +  ++Y+  I  SG+HLL++INEIL+ 
Sbjct: 391 GNMSHELRTPLTCIIGLSGTLLHWSQEGLNLPVDKQRKYLDTIQNSGKHLLDMINEILEY 450

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMR 369
           S +++G+Y LS    SL  + +  +  +   ++ + I +     I+P   S  AD + ++
Sbjct: 451 SNLQSGKYVLSVRYFSLTKVAKNVMQRVSDESEHRRINLELDLQIEPQKDSFSADPERVQ 510

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ +LL+NA+KFT+  G+V + V W       + ++D G GI E +IP +  SF Q   
Sbjct: 511 QILYHLLNNALKFTSKNGKVTLRV-WLEKNQLCLEVEDTGIGIEEEKIPLLFESFQQLEN 569

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + +    G GLGL + + ++  HGG   + S + +G      +P+            E  
Sbjct: 570 SRRRVYGGTGLGLALTKQLVELHGGTIEVESIINKGSTFTVRIPSQPQNKAKLVSQSEKN 629

Query: 490 Q 490
           Q
Sbjct: 630 Q 630


>gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 899

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +LE+ +    E++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   +  + + LL LINEILDLS+IE+G  E +   + L  + +E       R  
Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           +  +E+         S+ +D+  + QV  NL+ NA KFT  G    V+ G+         
Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++  V   F +      +  QG GLGL I ++I+   GG+  + S++ 
Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715

Query: 464 EGVEVIAILPNTRVLN 479
            G      LP   V+ 
Sbjct: 716 TGTTFTFWLPLENVIQ 731


>gi|317049304|ref|YP_004116952.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316950921|gb|ADU70396.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 908

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/361 (26%), Positives = 161/361 (44%), Gaps = 27/361 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  L I+ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 177 VFVATLLLLFCLCIAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
              + +   +    + + +   E    I            +LE+     D  +KRA+E  
Sbjct: 231 GELSILKNGINAMAMSLTAYHEEMQQNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+  +    +        ++Y+  I RS  +LL++IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLST----NQRDYMSTIERSAANLLSIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E +++L   A EK +E+   ++  +   V  D 
Sbjct: 347 DVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHEKGLEMTVCLEKQVPDNVIGDP 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             ++Q+++NL+ NA+KFT   G + + V   +         I + D G GI++ +   + 
Sbjct: 407 LRLQQILINLIGNAIKFTEQ-GHIDLRVELRNTNATRVALEIQVHDTGIGISDQQQTQLF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +F Q   +I     G GLGL I Q ++   GG+    S+  EG      +      N  
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVHEMGGEIAFHSRQGEGSTFWVHIQLDLNPNAP 525

Query: 482 P 482
           P
Sbjct: 526 P 526


>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
 gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
          Length = 916

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 7/285 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                   L +   +    + + D+L   +E   +   +    AE  + AKS+FLA MSH
Sbjct: 208 LTIRFNAMLDRLQSQDQQLREQHDELELRVEERTAQWRQATASAEAASQAKSQFLAVMSH 267

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ILG + ++    + P      K +     RSG+ LL +IN+ILD S++EAG+
Sbjct: 268 EIRTPLNGILGMTNLLLETELTP----KQKRFARVARRSGEDLLLIINDILDFSKVEAGK 323

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            EL      L  +V +        A  K +E+         S   D   + QV+ NLLSN
Sbjct: 324 LELEIHPFQLNLLVEDLAERYAPIAHAKGLELLCNTPLPPLSAEGDAARLAQVLTNLLSN 383

Query: 379 AVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           A+KFT  G     V + +   +    +  ++D G GI   +   +  +F Q   ++    
Sbjct: 384 AIKFTERGEVTLEVKLLLREDNLLHLHFGVRDTGIGIRVEQAERLFNAFTQADSSMTRRY 443

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            G GLGL I+Q ++   GG   + S+  +G      L    V + 
Sbjct: 444 GGTGLGLAISQCLVELMGGHIALESEPGKGSYFYFELRLPAVADT 488


>gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 896

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 870

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 12/270 (4%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               K  ++  +  AE  + AKS FLA+MSHE+RTP+NAILGF+ ++       + +   
Sbjct: 367 ERREKEKAERAKDTAEAASKAKSEFLANMSHEIRTPMNAILGFTSLLS----PLITDPRQ 422

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K Y+  I  SG++L++LIN+ILDLS+IEAG+ E+    + L  +  +   +     Q+K 
Sbjct: 423 KNYLQSIQSSGKNLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKG 482

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----Q 401
           ++    I   +   V  DE  +RQ++ NL+ NA++FT   G + ++    +G G      
Sbjct: 483 LQFITSIASDVPECVLLDEVRLRQILFNLVGNALRFT-ESGWIRLSAWREAGAGDGSFCL 541

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GI       +  SF Q S        G GLGL I++S++   GG   ++S+
Sbjct: 542 VMVVEDTGMGIQPEAHNRIFESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSR 601

Query: 462 LREGVEVIAILP-NTRVLNFIPEDNHESTQ 490
              G      LP  +        +  E++ 
Sbjct: 602 PGAGSVFEIRLPDVSEAAETDRAEQAETSD 631


>gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
 gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
          Length = 643

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +   AE + A +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 223 LGHLARHINNLASALEQASAEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         +Y      S  HLL +IN+ILD SRIE    +L     
Sbjct: 283 VLGMLQLLETTPLSN----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ + +  ++   +    V  D   +RQ++LNL+ NA+KFT 
Sbjct: 339 NLGELITSSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W     Q I    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 399 R-GQVQVDARWQVLDQQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL IA+++    GG+    S+   G      +P T      
Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLTLATPAP 498


>gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 487

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 159/350 (45%), Gaps = 16/350 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             + +  L + +      N      +     P+   L    +++++     +      +L
Sbjct: 135 PYFNTDVLSVGIPFKDTHNIDRVIMIHAPLKPLADELKHLQMLAIYTAVGGIVLAALLSL 194

Query: 198 SFFTYITYHLFKSNVKILSCQA----EKDDLIAELEV---AKSLSDETRK------RAEE 244
            F   I+  L K N   L+  +    ++ D+    E+   A SL+    +      + E+
Sbjct: 195 IFSRVISKPLVKMNKAALAMASGNYQQRVDIQTNDEIGLLANSLNTLASRLQEKISQLEK 254

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
           +   +  F+ +++HE++TPL  + GF+E +    +     +   EY+ +I      L  L
Sbjct: 255 QEQIRREFVTNVAHEIKTPLAVMQGFTETMIDGLV--KTEQERDEYLNNILEEINRLKRL 312

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+LDL R+E G ++  +    L +I+      L   A EK+I     ++ +L  V  +
Sbjct: 313 VNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEIGVEKNLPLVTCN 372

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NL+ NA++ T  GGRV + V   + +  ++ I D G GIA  ++P +   F
Sbjct: 373 SDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQ-VHLRISDTGEGIAPEDLPMIWERF 431

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +G  +   A  G GLGL I + I+  HGGQ  + SKL  G     +LP 
Sbjct: 432 YKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLPV 481


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 27/291 (9%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E+E A+   +   K  E  +  KS FLA+MSHELRTPLN++L  ++++     G L++  
Sbjct: 13  EMETAQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLSD-K 71

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             EY   IH SG +LL LIN+ILDLS++EAG+ E++   +SL D+V       +    E+
Sbjct: 72  QMEYARTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDDEE 131

Query: 347 NI--EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------- 397
           N               ++ D   ++Q+I NLLSNA KFT   G + + V           
Sbjct: 132 NNLAFQVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQ-GDIKLMVQRLELPPTPLE 190

Query: 398 ---------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                           +   IS+ D G GI + +   +  +F Q       +  G GLGL
Sbjct: 191 EGRREDWLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGLGL 250

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            I++ +    GG   + S+  +G      LP   +     E  ++S +++ 
Sbjct: 251 SISRQLARLLGGDLQLYSEEGQGSLFTLYLP-EIIEPIHSESEYKSQEHRS 300


>gi|327540026|gb|EGF26622.1| sensor signal transduction multi-kinase [Rhodopirellula baltica WH47]
          Length = 1976

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 8/303 (2%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                + S     +  A            +   + +    ++    E +    +L   K  
Sbjct: 1336 IADYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHERTESVVRHSKELELTAQQLTATKEK 1395

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +  AEE N AKS FLA MSHE+RTP+  ILGF+E++    +   ++   + ++  I
Sbjct: 1396 LQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVT--DDAERESHLQTI 1453

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            H +G HLL+L+N+ILD+S+IEA + E      +   +V++ I  L+ +A EK+I +  ++
Sbjct: 1454 HSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLEIQV 1513

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409
            +      +++D   +RQ++ NL SNA+KFT  GG V +++             I+++D+G
Sbjct: 1514 ESEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKMKIAVQDSG 1572

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             G+ + +   +   F Q  ++      G GLGL I++ +     G   + S+   G ++I
Sbjct: 1573 IGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQMI 1632

Query: 470  AIL 472
               
Sbjct: 1633 LNF 1635


>gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1432

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +     +   E  K  ++ N AKSRFLA+MSHE+RTPLN ILG ++++   ++     
Sbjct: 597 LTDQRRVNAAESEALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSLNN--- 652

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I  S Q LL +IN+ILD S+IEAG+  +     + + I    + +L   A 
Sbjct: 653 -EQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAA 711

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
            KN+ +   IDP L  V   D    +Q+++NL+SN +KFT   G V +            
Sbjct: 712 TKNLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFT-TSGSVSLRCLLDSEVDDDH 770

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI    +  +   F Q   +I  +  G GLGL I +S++   GG   +
Sbjct: 771 LLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGV 830

Query: 459 RSKLREGVEVIAILPNTRVLNF 480
            S   EG      +   +    
Sbjct: 831 DSTRGEGSRFWFTIKFRKPTET 852


>gi|260779140|ref|ZP_05888032.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605304|gb|EEX31599.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 797

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 16/317 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL- 215
           + L   V     P+++A        ++   IS   ++A        +   +    + +  
Sbjct: 254 YDLVSKVEAGIIPIMLACVMMGYFLINRFLISPIVIIAQ------KVDDSIEGGIIDLRY 307

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + Q E   LI          +  +++A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 308 NSQDEIKHLIETFNQKTVFLEAEKQKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 367

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +E  ++++  ++ SG H++ L+NEILD S+IE G  EL  +   L  I+   
Sbjct: 368 KTDL----SEEQQKHMKTLYESGDHMMTLLNEILDFSKIEQGHLELENNPFPLEAIIGSI 423

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--- 391
             +      EK ++     + P      +D+  +RQ++ NLL+NAVKFT+  G V V   
Sbjct: 424 NSVYFTLCSEKGLQFKVYSEVPPDRWYMSDKARLRQILFNLLNNAVKFTSR-GYVEVYFK 482

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V         I ++D G GIA+     +   F Q   +      G GLGL I + +   
Sbjct: 483 EVEKQGQNYLEIKVRDTGIGIAKEAQQKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCDL 542

Query: 452 HGGQFLIRSKLREGVEV 468
             G   + S+L  G   
Sbjct: 543 MNGSVTLTSELGIGTSF 559


>gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 417

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 13/325 (4%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++   + +     ++   +  T L+        L ++     + + +      +L     
Sbjct: 95  IAVDVMKAGAADYLAKHRITPTTLARTIRSAIRLHRAEQAARAAKQKLQITNDQLRQQNE 154

Query: 234 LSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                R + E +N         KS F+A++SHELRTP+NAI+GFS+++  +   PL+ E 
Sbjct: 155 ELAHHRAQIEAQNQELIKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPLS-EQ 213

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  + ++LL ++NE+LD S+IEA R EL      L   +   I  LQ  A EK
Sbjct: 214 QLDMVQRIFDNSRNLLTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALAVEK 273

Query: 347 NIEIFQKIDPSLSSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            + +  +I  +L S+    D + +R+V++NL+SNA+KFT   G V + +         IS
Sbjct: 274 ALTLKAEIPETLQSIQLTNDPECLRRVLVNLISNAIKFTEA-GEVTLQLHQPQPDQIKIS 332

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+   ++ T+   F Q   ++     G GLGL I +S++    GQ  + S+   
Sbjct: 333 VVDTGIGMTPEQLSTIFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQPGV 392

Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489
           G      LP    +  +P    +S+
Sbjct: 393 GSTFTVELPLQ--VQTLPNAKAKSS 415


>gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 785

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G + +    T  +   + 
Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I Q I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLN 479
           G      +P      
Sbjct: 630 GSTFYFTIPYEEAGE 644


>gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 512

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 263 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 320

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 321 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 377

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 378 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYLLEDE 436

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 437 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 492

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 493 ESREGEGSCFWFTHP 507


>gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 1038

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------------ETRKR-AEEENLAK 249
           +  L  S V++   QAE +   A+LE    L +             + + R  EE +  K
Sbjct: 306 SRSLQDSQVRLEEQQAELEQSNAQLEEQTQLLEVQRDELSRAQGALQAKARDLEEASRYK 365

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN++L  + ++     G L ++  K +   I  +G  LLNLIN+IL
Sbjct: 366 SEFLANMSHELRTPLNSLLIMARLLADNREGNLTSDQVK-FAETIETAGNDLLNLINDIL 424

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           D+S+IEAG  EL    + +  ++ +     Q  A EK +    +  P     + +D + +
Sbjct: 425 DISKIEAGHIELQIERVRVEPMLEKLRATFQSSASEKGLNFRIETVPGTPDRIESDPQRI 484

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N LSNA+KFT   G V ++V          +++D G GI E +   +  +F Q  
Sbjct: 485 EQVLKNFLSNAIKFTEK-GEVVLSVAEEEDGRIAFAVRDTGIGIPEDQQQAIFEAFRQAD 543

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +I     G GLGL I+  +    GG+  + S + +G   I ++P 
Sbjct: 544 GSINRKYGGTGLGLSISSELTRVLGGEIRVESTVGQGSSFILVVPK 589


>gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 570

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 153/309 (49%), Gaps = 8/309 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAE 227
           PV  AL T A  ++    I L G  A   +     T   F+  V+      E+ + L   
Sbjct: 129 PVFSALITGAKATITDSIILLIGRKAGQFTLDYRDTLSRFRPLVERALTDIERIEQLQQL 188

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +++        + +AE+ N AKSRFLA MSHELRTPL+A+LG+ +V+    +  L  E  
Sbjct: 189 VDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVL----LADLKQENQ 244

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL LIN+IL+LSRIE+G + +    + L   ++  +      A  K 
Sbjct: 245 LEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYALADAKG 304

Query: 348 IEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           ++    I+     S+W D   + Q++ NL+ NA+KFT   G V +T      +   I++K
Sbjct: 305 LKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFTHA-GEVCLTANVI-NQHLVITVK 362

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  V + F Q   +I  +  G GLGL I++ ++    G   ++SKL +G 
Sbjct: 363 DTGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSKLGQGS 422

Query: 467 EVIAILPNT 475
                LP +
Sbjct: 423 TFRIELPIS 431


>gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 785

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G + +    T  +   + 
Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I Q I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLN 479
           G      +P      
Sbjct: 630 GSTFYFTIPYEEAGE 644


>gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226]
 gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226]
          Length = 984

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L              L        +     +   +A A      +        +     
Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424

Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263
           Q  K+ L   +E       E               R++AE+ + AKS FLA+MSHE+RTP
Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG + +++  T+      T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+  
Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +VRE   ++Q RA+EK I +   ID  ++  W  DE  + QV+ NL+ N +KF
Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600

Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G V + V       G   +++D+G GIAE E  T+  +F Q          G GLG
Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ ++   GG+  + S+L +G      LP 
Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691


>gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 890

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                L  +   AK  +   ++ AE    AKSRFLA+MSHE+RTP+ AILG+SE +    
Sbjct: 350 VRNAQLFEQARQAKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYSESLRESN 409

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   + E   ++I  I RSG+HLL +IN+ILDLS+IEA + E+    ISL +++ +    
Sbjct: 410 L---SREERNQFIDIIVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLIEDLRSH 466

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           + +RA EK + +       L     +D   ++Q++ NL +NA KFT   G +H  V +  
Sbjct: 467 IGMRAHEKGLTLDITPKLPLPAHFESDPTRLKQILFNLGANATKFTHK-GSIHFGVSYEK 525

Query: 398 G-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D G G+  GE+  +   F Q   +      G GLGL I++ +    GG+ 
Sbjct: 526 DTNLLRFTVTDTGIGLGPGELKKIFEPFVQADSSTTRQYGGTGLGLYISRQLAHMLGGEL 585

Query: 457 LIRSKLREGVEVIAIL 472
            + S   EG      +
Sbjct: 586 TVDSSQGEGSRFSVTI 601


>gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 976

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 14/292 (4%)

Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           +  V   S   E  DL +AE             RA+E N +KS FLASMSHE+RTPL  I
Sbjct: 493 RQAVAGTSAAWENRDLSLAETCRTWISQRIASLRADEANRSKSSFLASMSHEIRTPLTLI 552

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG++E++  +   P   E  +     +  +G++LL L+N+ILDLS+IEAG+ E     + 
Sbjct: 553 LGYTEMLMDQETEPWKTEALR----VVRHNGEYLLALLNDILDLSKIEAGKLETRFEPVD 608

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
             D++R+ +   Q RA+ K + +       L   V  D   +RQV++NL+ NA+KFT  G
Sbjct: 609 PFDLLRDVVDPFQPRARAKGLRLELTCATPLPRRVVTDPVRVRQVLVNLIGNALKFTDQG 668

Query: 387 G-RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             RV  +  W       R   I++ D G G+   ++  +   F Q   ++    +G GLG
Sbjct: 669 SVRVVASAEWEPTTGSARWIEIAVHDTGIGMTPEQMSRLFRPFEQVDPSLTRRHEGTGLG 728

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIPEDNHESTQ 490
           L I++ +    GG   + S   +G          P + +    P +  +S +
Sbjct: 729 LAISRRLARMLGGNITVESVAGQGSVFRFRFTPEPESDLALPNPANQPQSGE 780


>gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 807

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 674 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 788 GSCFWFTYP 796


>gi|119493632|ref|ZP_01624281.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119452552|gb|EAW33736.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 936

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 10/328 (3%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           ++  +    L   + +S   +V+A      +   +  ++                Y    
Sbjct: 384 AVQRIHIQALAILLAISGLALVLATLISRQLVKPLSQLTYVTTNLPDRLLEKQPIYWSKS 443

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +++ S       +   L        + ++ AE  N AKSRFLA+MSHELRTPLNAILG
Sbjct: 444 PAIELASLMRNFQQMAETLSEKFQELQKAKQDAEVANQAKSRFLANMSHELRTPLNAILG 503

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F ++           +T +EY+  I  S +HLL LINE+LDL++IEAG+  ++ +   L 
Sbjct: 504 FIQLF---DYQSNLTQTQQEYLQTIRYSAEHLLELINEVLDLAKIEAGKTIVNSAHFDLH 560

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +  +   M   R +   + +    + ++   +  D++ +RQ+++NL+ NAVKFT   G 
Sbjct: 561 LLFNQLYAMFSQRCEAHGLFLQVHWEDNVPQYLHGDDRKLRQILINLVGNAVKFTQA-GS 619

Query: 389 VHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           + V     S + +  I + D G GIA  ++  +  SF Q     +  ++G GLGL I+Q 
Sbjct: 620 ITVQARCLSNQRRMQIDVTDTGQGIAPEDLEAIFASFTQ----TQHNQEGTGLGLTISQQ 675

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475
                GG   ++S+  +G      +P  
Sbjct: 676 FARLMGGNLTVQSQFGQGTTFTLEIPIE 703


>gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 808

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 143/280 (51%), Gaps = 18/280 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            ++  ++NV +   + E   +        I EL+  +S   + +++AE  +  KS FLA+
Sbjct: 539 QWNWIRTNVVVNQFKPENGVIELIGINYDITELKETESKLIDAKEKAETADRLKSAFLAN 598

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLNAI+GFS ++  E     N E  ++Y+  +  + + LL LI++ILDLS++E
Sbjct: 599 MSHEIRTPLNAIVGFSSLLVQE----ENPEEREQYMAIVEENNELLLQLISDILDLSKME 654

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG ++  E  + +  +  + + +++L+A+   +E+          + +D   + QVI N 
Sbjct: 655 AGTFDFVERELDVNLLCEDMVRVMKLKAK-PGVEVVFDRHLPECVIASDRNRLNQVIANF 713

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           ++NA+KFTAI G + +             + D G GI + +   +   F +      S  
Sbjct: 714 INNAIKFTAI-GSIRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIFDRFVKL----NSFV 768

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            G GLGL I++SI+   GG   + S+  +G      LP  
Sbjct: 769 HGTGLGLSISKSIVEQLGGTIGVESEPGKGACFWFTLPIA 808


>gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355]
          Length = 922

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 27/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  L I+ L  + L   V     P+   +ST   +    LD  + G     L
Sbjct: 190 VFIATLMLLFCLCIAMLFAYRLMRDV---TGPIRNMVSTVDRIRRGQLDSRVEG---HML 243

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
              + +   +    + + +   E    I            +LE+     D  +KRA+E  
Sbjct: 244 GELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVELDLAKKRAQEAA 303

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN +LGF+  +    +      T ++Y+  I RS  +LL++IN
Sbjct: 304 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRT----TQRDYMLTIERSANNLLSIIN 359

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD SR+EAG+  L      L   + E +++L   A EK +E+    D S+   V  D 
Sbjct: 360 DVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNVIGDA 419

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVL 421
             ++Q+++NL+ NA+KFT   G +++ V   +         I ++D G GI+E +   + 
Sbjct: 420 LRLQQILINLMGNAIKFTEK-GTINLRVEQHTITATHVELEIQVRDTGIGISEEQQAQLF 478

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +I     G GLGL I Q ++    G+    S+   G      
Sbjct: 479 QAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWVR 528


>gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1688

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 20/280 (7%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +    L       D+ +  ++ + + +  ++ AEE N AKS F+A++SHE+RTPL+ ++G
Sbjct: 542 TKDSQLRMAGTLRDVTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIG 599

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S+++    +    NE  ++Y+  I +S Q LL +IN+ILD S++E+ + ++     S+I
Sbjct: 600 VSDLLLETVL----NEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSII 655

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387
           +  +  I ML + A   ++++  ++ P++   V  D   +RQV+LNL+SNA+KFT+ G  
Sbjct: 656 ETGQAVIYMLSV-ATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHV 714

Query: 388 --RVHV--------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
              + V        +    +     I+++D G GI +     +   F Q   +      G
Sbjct: 715 LCDISVVESLNPLHSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGG 774

Query: 438 VGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL I + ++    GG   + S +  G      +P  +
Sbjct: 775 TGLGLSITKRLIEEVMGGTIHVSSTVGLGSTFKCTIPFKK 814


>gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
 gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
          Length = 896

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFMIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA  +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIATEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 979

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 169/445 (37%), Gaps = 53/445 (11%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
           +  L          +F+      + +        A     +              W   L
Sbjct: 269 VALLGYFSNKMWTPFFSYELQPLVAATSINFCAIAMCLFLRDF---LETGRFHPAWDRLL 325

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L      G    L   +        +  ++  A  L+   +                   
Sbjct: 326 LACVFPTGALVVLGPFLPSSHMHTMFNLVFNVAVFLMGFGV------------------- 366

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEKDDLI 225
              + +  +       I L      ++ FF ++   +  SN+       L+  AE   + 
Sbjct: 367 ---ILSSCLKGRWPGCILLMAWSLVSVLFFIFVATVVGWSNLGYSMGFNLALAAEAVLMS 423

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             L          R+ +     AK+ FLA MSHE+RTP+ AILGF+++           +
Sbjct: 424 LPLAYRIRQLKLEREASAMAARAKNLFLARMSHEIRTPMAAILGFTDIALRMQCC----D 479

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++Y+  +  S  HLL LINEILDL++IEAG+ ++   +  L+ + RE   ++   A++
Sbjct: 480 QVRQYLLKVKVSAGHLLGLINEILDLAKIEAGKLDVEHKSFDLLCLAREVCEIVAPMAEK 539

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------- 395
              E+  + DP L   V+ D   +RQV++NL  NAVKFT   G V + +G+         
Sbjct: 540 NGNELLLEADPDLPVHVFGDPMRLRQVLVNLAGNAVKFT-KNGEVRIAMGFAKAVPGAAY 598

Query: 396 --------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   +  +     I D GPGI    IP +  +F QG     S   G GLGL I+  
Sbjct: 599 AVDAHAFSSGRQRFRFEISDTGPGIPAELIPRLFQAFEQGGGDTASRYGGAGLGLNISSR 658

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++   GG   + S+  +G      L
Sbjct: 659 LVELMGGVIGLSSERGQGSTFWVEL 683


>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1407

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 9/305 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             A+   A+M+ H                   +T  ++  +  I        D I+    
Sbjct: 605 FGAIVAGAVMNGHDSREWTFVRHDGTEFIGLLLTSAVYSMDSVISGYLCVIQD-ISGRRE 663

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +      R  AEE +  KS FLA+MSHE+RTP+N I+G S +     + P      ++Y
Sbjct: 664 TEQNLINARTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTDLTP----RQRDY 719

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +SGQ+LL +IN+ILD+S+IEAG+  +  S   L + + + + ++  +  EK +E+
Sbjct: 720 LKKIQQSGQNLLRIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLEL 779

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIK 406
              I   +   +  D   + QV+LN  SNA+KFT  G   + V +   S      Y  ++
Sbjct: 780 ILDIASDVPVNLLGDSLRLGQVLLNYASNALKFTEQGEIVIAVRLRERSEDQVLLYFEVR 839

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G++  +I  + T F QG  +      G GLGL I + +    GG+  + S   +G 
Sbjct: 840 DTGIGLSSEQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGS 899

Query: 467 EVIAI 471
                
Sbjct: 900 TFWFT 904


>gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
 gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
          Length = 1407

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 144/273 (52%), Gaps = 5/273 (1%)

Query: 210  SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
              + ++    ++  L AE     +     R  AE  N AK  FL+ +SHELR PLN +LG
Sbjct: 982  MIILVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLG 1041

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +++++  + +   +     + +  I RS +    LI ++LD+SRI  G+  L    + LI
Sbjct: 1042 WTQLLRKQQL---DEAKTNQALEAIERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLI 1098

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             ++   I ++QL A  KNI+I  ++D +  ++  D+  ++QVI NLLSN++KFT +GGR+
Sbjct: 1099 PVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRI 1158

Query: 390  HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             +T+ ++  +G  I ++D G GI+   +P +   F Q   +   +  G+GLGL I + ++
Sbjct: 1159 DITLDYSPFQG-EIQVRDTGVGISADFLPYIFDRFRQADRSPTRSNTGLGLGLSIVRHLV 1217

Query: 450  ANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
              HGG   + S    +G      LP    L  I
Sbjct: 1218 ELHGGTVEVTSPGEGQGATFTVRLPLQTNLEKI 1250


>gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
 gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
          Length = 896

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN++   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             + +  P++  E T
Sbjct: 749 ATIEDVTPDEVIEET 763


>gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 464

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 25/319 (7%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDE 237
              L + +  M+   +         +  + ++ L        + A+ + A  +     DE
Sbjct: 154 FRPLRLMIFFMIGLIVLNLVIFGRQIIDTIIRPLIDMKRASTVYAQGDFAYRIPIQSDDE 213

Query: 238 TRKRAEEENLA----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             + AE  N            +  FLA++SHELRTPL+ I G++E+++ + +   + +T 
Sbjct: 214 IGELAETLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKAL---DEKTR 270

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y   I R  + L  L+N++LDL+++E   Y +++  +    ++ + +  ++  A+ K 
Sbjct: 271 DQYYQIIERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKG 330

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + I    DPS   V  D   + QVI NLL NA+++T     ++++      +    SI+D
Sbjct: 331 VSIITDFDPSQI-VLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTIC-SIRD 388

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    +  +   F +   +    + G GLGL I + I+  H G     S L +G  
Sbjct: 389 EGEGIPPEHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTT 448

Query: 468 VIAILPNTRVLNFIPEDNH 486
           V+  LP       +P+++ 
Sbjct: 449 VLITLPL------LPDEDD 461


>gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 627

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 12/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +        T ++ +  N AKSRFLA MSHE+RTPLN I G  +++    M   
Sbjct: 226 EDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEM--- 282

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  S + LLN+IN+ILD S+IEA R EL       + ++ + + +++LR
Sbjct: 283 -PPAQREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLR 341

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRG 400
            Q K + +     P L+ V   D   + Q++ NL+ NA+KFT  GG + V     + G G
Sbjct: 342 TQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFT-AGGEIVVRASSRSRGDG 400

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D+G G+ +    T+   F Q   +      G GLGL I + ++    G   
Sbjct: 401 TVLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTIT 460

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           + S    G      +P    +  +P    E
Sbjct: 461 VASSPGNGSTFCFAVPLKPGV--LPAAAPE 488


>gi|26990865|ref|NP_746290.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida KT2440]
 gi|24985876|gb|AAN69754.1|AE016611_12 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 643

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +    E + A +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         +Y      S  HLL +IN+ILD SRIE    +L     
Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ + +  ++   +    V  D   +RQ++LNL+ NA+KFT 
Sbjct: 339 NLGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLIGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W     Q I    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 399 R-GQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL IA+++    GG+    S+   G      +P        
Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLALANPAP 498


>gi|46125481|ref|XP_387294.1| hypothetical protein FG07118.1 [Gibberella zeae PH-1]
          Length = 796

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 181 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 240

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 241 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTV 296

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++   +D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 297 FNALKTLAVKANEKFLDLTYMVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 355

Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           T+  + G+             ++D G GIA+ ++  +  +F Q   ++     G GLGL 
Sbjct: 356 TIKESMGQSHVRPGEYAVEFVVQDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLS 415

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++   GG   + S+  +G E    
Sbjct: 416 ISKRLVNLMGGDLWVNSQHGKGSEFHFT 443


>gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 723

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 9/255 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E E      +E  + A   N AK+ FL+SMSH++RTP+NAI+G + + +       + E
Sbjct: 286 EEQERQSKALEEAYQTARVANSAKTNFLSSMSHDIRTPMNAIMGMTTIAKANL---DSKE 342

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
                +  I  S QHLLNLINE+LD+S+IE+G+ +L+   ++L ++++    + +    +
Sbjct: 343 KVCSCLDKIDTSSQHLLNLINEVLDMSKIESGKIDLTLEEVNLHELLKSVSEICRPLISQ 402

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGR 399
           K+ E    I       V AD + ++QV+LNLLSNA+K+T  GGR+ + +           
Sbjct: 403 KHQEFRSSIAQVRHKEVIADGERLKQVMLNLLSNAIKYTPEGGRISLRINELYSPNPKKS 462

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S  D G GI+E   P V   F +      S  QG GLG+ I ++I+    G   + 
Sbjct: 463 QYEFSCIDTGIGISEDFRPYVFEPFWRAEDPRISKSQGTGLGMAITENIVRMMNGTIRVE 522

Query: 460 SKLREGVEVIAILPN 474
           SK   G +  A +P 
Sbjct: 523 SKTGAGSKFTASIPL 537


>gi|311694504|gb|ADP97377.1| sensory box histidine kinase/response regulator [marine bacterium
           HP15]
          Length = 647

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/365 (24%), Positives = 162/365 (44%), Gaps = 28/365 (7%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
              + + +S          +  +   V VAL   +I+ ++    ++   +         +
Sbjct: 152 VGTVQVGVSQDVLAERRQDILWTSIAVGVALLLFSILIINHFLGAILAPIRDLAGRIGQL 211

Query: 204 TYH--------LFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLA 248
           T            +S+ +I++ + + + L   L   K+  D+        R++AE  N A
Sbjct: 212 TDGDYQERPLNTHQSSKEIVAIEEQLNQLAHHLAGLKTARDQTLAASEGAREKAEMANQA 271

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLN +LG  ++I+ E +     +  +EY+    +S + LL +I +I
Sbjct: 272 KSEFLATMSHELRTPLNGVLGMVDLIQEEPL----TQRQREYLNTARQSTEDLLTVIGDI 327

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI---DPSLSSVWADE 365
           LD S++++G  +L     +L +++  C    +  A+++ + +  K     P    V  D 
Sbjct: 328 LDYSKMDSGTLKLESQEFNLRELISNCTATYRHLAEQQGLALNLKFFGDWPDNPVVIGDP 387

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             +RQ++  L  NA+KFT   G +++  G+ +     I    S+ D+G GI    +  + 
Sbjct: 388 ARLRQILAGLADNAIKFTGD-GFINIQAGFFALEDNCIILNCSVSDSGSGIPTERLHDIF 446

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNF 480
            SF Q          G GLGL + Q ++   GG   + + L +G      LP        
Sbjct: 447 NSFEQVDGGNSRLYGGTGLGLSLVQRLVELMGGHIQVETDLGKGSSFRFELPFELADRPS 506

Query: 481 IPEDN 485
            PE +
Sbjct: 507 EPEPS 511


>gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1]
 gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1]
          Length = 994

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 158/359 (44%), Gaps = 14/359 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            + +  S    +AL  S   + ++ YA       V   + T+ +++  +    L   L  
Sbjct: 202 GIFLVISLNAFVALRFSRYIHDVIEYAREAIARMVNGDIETEVLVTRDINTRDLFNNLEL 261

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +        L     +      E  + I   E+     D  RK A E +  KS FLA+
Sbjct: 262 LRNTILQGQKELQHHADQTTEDLRETLETI---EIQNIELDLARKEAVEASRIKSEFLAN 318

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE+RTPLNA++GF+ ++    +         +Y+  I +S + LL +IN++LD S+IE
Sbjct: 319 ISHEIRTPLNAVIGFTTLLLKSDIKTF----QYDYLETILKSSEGLLAIINDVLDFSKIE 374

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNI-EIFQKIDPSLSSVWADEKGMRQVILN 374
           AG+  L  +  +  ++V + + ML   A EK++ +I          +  D   ++Q++ N
Sbjct: 375 AGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISLYYSDVPQQIIGDPLRLKQILTN 434

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L++NA+KFT+  G V V V     R       +S+ D G G+ + +   +  +F Q   +
Sbjct: 435 LVNNAIKFTSQ-GEVVVRVMLEDSRNHLCVIKVSVTDTGIGLTKEQQSALFHAFQQADNS 493

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                 G GLGL I++ ++    GQ  I S++  G           ++        E  
Sbjct: 494 AARRHSGTGLGLVISKHLVEQMRGQIGIESEIGAGATFWFTF-RAEIVEHQDSARREKN 551


>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1126

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 11/260 (4%)

Query: 223 DLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L  ++   KS  +E R    RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +
Sbjct: 561 ALFTDVTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL 620

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   K ++  I +SG  LL +IN+ILD S+I+AG+ +L  +A  + + V +   +L
Sbjct: 621 DT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLL 676

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTS 397
              A EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V     +
Sbjct: 677 SSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFEAAA 736

Query: 398 GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           G      I I+D G GI   ++ +V   F Q   +     +G GLGL I   ++   GG 
Sbjct: 737 GGEIMASIRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGY 796

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + S+  +G      LP  
Sbjct: 797 LNVESEWGKGSVFTVNLPFA 816


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1170

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 3/298 (1%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +        L +    +   + + D+    L  A+ + ++     +  +  KS FLA+M
Sbjct: 440 QAELEQTNEQLAEQTEALARQRDQMDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANM 499

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+ L  ++++     G L+++  + +   I+ +G  LL LIN+ILD+S++EA
Sbjct: 500 SHELRTPLNSSLILAKLLADNPDGNLSDDQVQ-FARSIYSAGNDLLTLINDILDISKVEA 558

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+ E+      L  +V     +   +A EK +    ++   L  +++ D + + Q++ NL
Sbjct: 559 GKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNL 618

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           L+NA KFT   G V + V    G     +++D G GIA  +   +  +F Q         
Sbjct: 619 LANAFKFTEK-GSVTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRY 677

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            G GLGL I++ +    GGQ  ++S    G     +LP +       E        + 
Sbjct: 678 GGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLPQSYSEPLAVEPTTAPQPSRA 735


>gi|39726367|gb|AAR30126.1| putative histidine kinase NIK1p [Gibberella moniliformis]
          Length = 1282

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 14/265 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 670 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 729

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 730 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 785

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 786 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 844

Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            + G+             ++D G GIA+ ++  +  +F Q   ++     G GLGL I++
Sbjct: 845 ESMGQNNVRPGEYAVEFVVEDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 904

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG   + S+  +G E    
Sbjct: 905 RLVNLMGGDLWVNSEHGKGSEFHFT 929


>gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 736

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  ++     R++AEE +  K  FLA+MSHE+RTPLNAI+GFS+++  +   PL  
Sbjct: 484 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 541

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E+I  I ++   LL LIN+ILDLSRIE+G    S   + L  ++ +     QL   
Sbjct: 542 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 601

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           E  +E+  ++      + +D   + QV  N ++NAVKFTA  G + +    ++      I
Sbjct: 602 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 659

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + +   V   F +         QG GLGL I QSI+    G   + S++ 
Sbjct: 660 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 715

Query: 464 EGVEVIAILP 473
            G +    LP
Sbjct: 716 VGSKFTISLP 725


>gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 771

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  ++     R++AEE +  K  FLA+MSHE+RTPLNAI+GFS+++  +   PL  
Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E+I  I ++   LL LIN+ILDLSRIE+G    S   + L  ++ +     QL   
Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           E  +E+  ++      + +D   + QV  N ++NAVKFTA  G + +    ++      I
Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + +   V   F +         QG GLGL I QSI+    G   + S++ 
Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750

Query: 464 EGVEVIAILP 473
            G +    LP
Sbjct: 751 VGSKFTISLP 760


>gi|166030503|ref|ZP_02233332.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
 gi|166029665|gb|EDR48422.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
          Length = 957

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +  ++L +SL   ++  +     +       ++  K      +   L  ELE  +    
Sbjct: 506 FIQDNLLAVSLIVGISIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A+  N AK+ FL +MSH++RTP+N I+G   ++E       + E  K+ +  IH 
Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKIHE 622

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+LIN++LD++++E+      + +I+L  + +E    L  +A+EK + +  + D 
Sbjct: 623 SSKLLLSLINDVLDMAKLESDTVVFGDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411
            S   VW++   +++V++NL +N++K+  + G ++++   +  +         I+DNG G
Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742

Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++E  I   + T F Q   + +S   G GLG+PI + ++   GG   + SKL EG     
Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802

Query: 471 ILPNTRVLNFIPEDNHE 487
           ILP     N  PE+  +
Sbjct: 803 ILPFKIDTNARPEEKED 819


>gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1426

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 149/299 (49%), Gaps = 12/299 (4%)

Query: 186  DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            ++    +L      F +    L K+    ++     +  I +    +    + +  A+  
Sbjct: 707  NLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTGINRDITQERGLEDWLRKAKDEADAA 766

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            + AKS FLA+MSHE+RTP+NAILG   +++  T+         +Y+     S + LL+LI
Sbjct: 767  SAAKSNFLANMSHEIRTPMNAILGMLHLVKRTTLTH----QQNDYVSKAQISAKSLLSLI 822

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
            N+ILD S+++AG+ EL ++   + +++ E   +L   + EK++E+   ID  +   +  D
Sbjct: 823  NDILDFSKVDAGKLELEKAPFEVEELLCELSTVLSGSSLEKDVELIFDIDKDIPAYLIGD 882

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTV 420
            +  + Q+++NL+SNAVKFT   G V + +   S   +     +S+KD G GIA+ +I ++
Sbjct: 883  KLRLLQILINLVSNAVKFTLE-GSVVLEIKQLSIDPRVSRLSVSVKDTGIGIAKDQIDSI 941

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477
               F QG  +      G GLGL I +  +   GG   + S L EG        LP   +
Sbjct: 942  FDVFSQGESSTARRFGGSGLGLVICRRFVELMGGSLQVDSVLGEGSRFYFTIDLPIADI 1000


>gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 909

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 8/270 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +   A+    E R++A + + AKS FLA MSHE+RTPLNAI+G ++++    + P   
Sbjct: 504 ITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAIIGITDILAESDLKP--- 560

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +     +G++LL LIN+ILD+S+IEA    L + A  L         +L+ +A 
Sbjct: 561 -EQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDLESTTTNICDILKQKAT 619

Query: 345 EKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           EK+++    ++        V  D   +RQ++ NL+ NA+KFT  G   V +    +S + 
Sbjct: 620 EKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQEGEIAVLLDFDSSSQKF 679

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +I+D G GI + +   +  SF Q   +I     G GLGL I+++++   GG+   +S
Sbjct: 680 VRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTISKNLVELMGGRIWFQS 739

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +   G      +P             E TQ
Sbjct: 740 EEGSGSSFYFTVPYVPTEAPRELAAPEKTQ 769


>gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 602

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 172/458 (37%), Gaps = 16/458 (3%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
           +  S    +  +   +V  + R   I       + ++   F +     +           
Sbjct: 5   DTGSDRRAEVALTRAYV-PIVRGYLIASSVYYALISLSHPFYEKGFALLLLESLAVAACL 63

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
                 + +     +G          V      L  + +   +   + P  L  +    L
Sbjct: 64  YGFGAWRALREGRIVGPGLE-----GVALGMNALFLSNVLAYQILHFEPMKLVYFVLMGL 118

Query: 146 LIALSI-SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           + A S  S         A  +    +        I +   + ++ A       +    + 
Sbjct: 119 VFATSAPSRRVALGSVSAAVIGLVWMAQKAPGDTINNYAFIGLAGAFAAIGMSTLMRGVV 178

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               ++ +   +   E    + E    K+ +      AE  N AK+ FLA+MSHE+RTPL
Sbjct: 179 RREVRARLASEALNVELQRELTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPL 238

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LG ++++    + P      +  +  +  SGQ LL++IN ILD+S+IEAG+ E++ +
Sbjct: 239 NGVLGMAQIMAAGELSP----DQRRRLDTVTASGQSLLSVINAILDISKIEAGKMEINPA 294

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
              L   +     +    A++K ++   +I          D   +RQV+ NL+SNA+KFT
Sbjct: 295 PFDLSAHLDALRQLYGGLARDKELDFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFT 354

Query: 384 AIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            +G    V V         +  + D+G GI E E   + T F Q   +      G GLGL
Sbjct: 355 DVG---TVRVFVEGDDKTIVARVTDSGAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGL 411

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            I +++    GG     +    G      LP  RV   
Sbjct: 412 AICKTLSELMGGSISYSTAEGGGACFTVTLPMPRVKPA 449


>gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 790

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217
           A+  S   +V+ +             S    +   L+          K     + ++   
Sbjct: 200 AMITSGVILVIVMLCWLGFGTWFRVNSKLDAIIHTLTALINDEEKQTKVKVDGSDELTIF 259

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++   
Sbjct: 260 AQQVNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 319

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        +E + DI  S Q LL L+N+ILDLS+IE+GR ELS     + ++V + ++
Sbjct: 320 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMV 375

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + Q +A  K +E+   +  ++   V  D+  ++QVI NL+SNAVKFT   G + V V + 
Sbjct: 376 LFQSKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFT-ESGHIRVDVSYD 434

Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        ++D G GI + ++ T+   F Q    +     G GLGL I + +++ 
Sbjct: 435 ELSEKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSM 494

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GGQ +  S    G      +
Sbjct: 495 MGGQLIATSTKGVGTCFEFSI 515


>gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 732

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 13/257 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      R +AEE N  KS FLA+MSHE+RTPLNAI+GFS+++        + 
Sbjct: 486 ITERKRIEEELLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTT----DDE 541

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++  I  +   LL LI +ILDLS+IEAG  E   + + L  ++ E    ++L+  
Sbjct: 542 EEKKQFVSIIESNNVLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKIA 601

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +E+          ++ D+  + QV++NLL+NA+KFT   G +H              
Sbjct: 602 DT-VELRFTDRMPSCRLYVDKNRLSQVLINLLTNAMKFTKE-GYIHFGYRLVDEDTLEFY 659

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + ++  +   F + +  +     G GLGL I Q I+   GG+  + S   +
Sbjct: 660 VSDTGCGIPKEQLRNIFERFIKLNNFVS----GTGLGLSICQVIVERMGGRIWVESDEGK 715

Query: 465 GVEVIAI---LPNTRVL 478
           G          P  +VL
Sbjct: 716 GATFFFTIKYFPIEKVL 732


>gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 794

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  + +++  +  AE  N AKS FL +MSH++RTPLNA++GF+++         +     
Sbjct: 399 ETKREMANLEK--AELANKAKSAFLFNMSHDIRTPLNAMIGFTDMAVKNI---DDKAKAL 453

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +G    S +HLL+LIN++LD+SRIE+G+ EL  + ++L +   +C+ ML+  A++KN+
Sbjct: 454 DCLGKSKLSSEHLLSLINDVLDMSRIESGKVELDLNPVNLDENGEDCVPMLRSLAEKKNV 513

Query: 349 EIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQY 402
                  D     V+ D   + QVI+N++SNAVK+T  GG V V +              
Sbjct: 514 HFEFAHHDIQNRYVYVDFLRLNQVIINVVSNAVKYTPSGGSVTVDITQIPSEREGYGLYQ 573

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I IKD G G++      +   F +   +  S +QG GLGL I + I+    G   + SK+
Sbjct: 574 IVIKDTGIGMSAEYQQHLFDEFSRERTSTVSKQQGTGLGLAITKRIVDMMEGSIDVESKV 633

Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487
            EG +    +P    +   PE   +
Sbjct: 634 GEGSKFTIRIPMR--IQENPEAVEQ 656


>gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 456

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+A++SHELRTPL +I GF E +    +   N E  ++++  I    + L  LIN+I
Sbjct: 228 RSEFVANVSHELRTPLTSIRGFIETLRSGAI--ENPEAREKFLDIIDFEAERLTRLINDI 285

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS IE  +       I +   + + + +++  A++K+I + + ++    ++ A+    
Sbjct: 286 LTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDRF 345

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+++NL+ N +K+T  GG V V+     G    I ++DNG GI + +IP +   F +  
Sbjct: 346 HQMMINLIDNGIKYTQEGGFVKVST-RLEGEKIIIEVEDNGIGIPKDKIPRLFERFYRVD 404

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +      G GLGL I + I+ +  G+  + S++ +G +     
Sbjct: 405 KSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRF 448


>gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 10/285 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            ++ ++    Q      + + E      +   ++A   N AKS FLA+MSHE+RTP+NAI
Sbjct: 122 IRAALRDRERQYRMRIYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAI 181

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG S +++         E   +YI  +  S + LL LIN++LD+++IEA   E+      
Sbjct: 182 LGLSTILKH---SQPLTEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQ 238

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L  ++R+   M+ L+A+EK++++   +D         D   +RQ++ NL SNA+KFT   
Sbjct: 239 LDQVIRDIADMMGLKAREKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDS- 297

Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V + V            IS+ D G GIA  ++  +   F Q    I     G GLGL 
Sbjct: 298 GEVAIIVASAPQGRHCHITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLA 357

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           I++++    GG   + S+L  G      LP    L   P+   +S
Sbjct: 358 ISKTLAELMGGTIAVESELDRGSRFTLALPLR--LADRPDSFPDS 400


>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1259

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 150/279 (53%), Gaps = 20/279 (7%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I++ + A++   + ++ AE  N AKS FLA+MSHELR+PLNAILGF++VI          
Sbjct: 758  ISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVI---NGSSNLT 814

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +  +  I RSG+HLL LINEILDLS+IEAG+  L +    L  ++ E   + +++A 
Sbjct: 815  TQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKAS 874

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            +KN+++   I+P+L   +  D   +RQ+++NLLSNA+KFT   G V +    +       
Sbjct: 875  QKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQK-GTVCLEADLSETSPVCL 933

Query: 402  ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      +  + D G GI   EI  + + F Q    I+S  QG GLGL I +  +  
Sbjct: 934  IGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQ-QGTGLGLAICKGYIKL 992

Query: 452  HGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNHES 488
             GG+  + S+ R G      +P   V     IPE++ +S
Sbjct: 993  FGGKIEVHSQPRVGTVFDLEMPALPVDIAEIIPENSSQS 1031


>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
 gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
          Length = 1199

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 9/264 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A LE         R  A   N AKS FLA+MSHE+RTP+NAI+G S +     +      
Sbjct: 458 AALERFAEKLAVARDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + YI  +  S   LL LIN+ILD S+IEAG+ ++      L +++     ++ LRA E
Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASE 573

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           + +E+   I+  + + +  D   + QV++NL +NAVKFT  G  ++ V V    G     
Sbjct: 574 RGLELLIHIERDVPTTLVGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKRQGDDVEL 633

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D+G G+ + +   + + F Q   +      G GLGL I++ +    GG   + S+
Sbjct: 634 EFSVEDSGIGMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVESE 693

Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485
             +G      +  T+V + + +DN
Sbjct: 694 FGQGSRFSFSI-ATKVSHALKQDN 716


>gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 775

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 158/277 (57%), Gaps = 2/277 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     L  +   + + +   +   AEL +A +     ++RAE  N AKS FLA+M
Sbjct: 498 QVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANM 557

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFSE+++ +  GPL +E Y EY  DI  SG+HLLN+IN+ILD+S+IEA
Sbjct: 558 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 617

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G   ++   I L  ++ E +    + A+ KNI + Q+I   L +++AD + M+QV+LNLL
Sbjct: 618 GHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQVLLNLL 676

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNAVKFT  GGR+ +           ++I D+G GI +G +  +   F Q       ++ 
Sbjct: 677 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKG 735

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++S+   HGG   I S    G  +   +P
Sbjct: 736 GSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 772


>gi|291523429|emb|CBK81722.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 953

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +  ++L +SL   ++  +     +       ++  K      +   L  ELE  +    
Sbjct: 506 FIQDNLLAVSLIVGISIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A+  N AK+ FL +MSH++RTP+N I+G   ++E       + E  K+ +  I+ 
Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+L+N++LD++++E+     S+ +I+L  + +E    L  +A+EK + +  + D 
Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411
            S   VW++   +++V++NL +N++K+  + G ++++   +  +         I+DNG G
Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742

Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++E  I   + T F Q   + +S   G GLG+PI + ++   GG   + SKL EG     
Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802

Query: 471 ILPNTRVLNFIPEDNHE 487
           ILP     N  PE+  +
Sbjct: 803 ILPFKIDTNARPEEKED 819


>gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 775

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++ +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++  +     + 
Sbjct: 524 ITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAEDV----SE 579

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I ++   LL LIN+ILDLS+IEAG  E   + I +  ++ E     ++R  
Sbjct: 580 EERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQP 639

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ I   +      ++ D++ + QV+ N +SNA+KFT   G +               
Sbjct: 640 NANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNT-GSITFGYEEPKDGYIRFF 698

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   ++  +   F +      S +QG GLGL I+Q+I+    G+  + S+L +
Sbjct: 699 VTDTGTGIPPEKVADIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVLSELGK 754

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 755 GSTFWFTLPYEK 766


>gi|229529146|ref|ZP_04418536.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
 gi|229332920|gb|EEN98406.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
          Length = 736

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
 gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
          Length = 958

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E  + AE  N AK+ FL++MSH++RTP+N
Sbjct: 410 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 465

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +G I  S +HLL LINE+LD++ IE+G+  L++  
Sbjct: 466 AIVGLTAIAGANV---ESQDRVIECLGKITESSRHLLGLINEVLDMACIESGKMTLAQED 522

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L ++V   I + +    E        I+      V  D   ++QV +NL+SNA+K+T 
Sbjct: 523 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTP 582

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 583 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 642

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 643 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 675


>gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1340

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/458 (23%), Positives = 174/458 (37%), Gaps = 22/458 (4%)

Query: 55   FVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ 114
             V                P  +LI    Y A   + ++       +G+    +  ++V  
Sbjct: 698  MVDAQYGAFLLAESGVDRPALNLIASYGYQAPWDVPRRFDFGQSLVGQAARTKRTIVVAN 757

Query: 115  IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
                      +L +        L I     +L  + +++ S F   +  FL+     + +
Sbjct: 758  TPADYLQIASSLGQSAPVALIVLPILFEDQVLGVIELASFSPFAQVHHDFLNLLTETIGV 817

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAEKDDLIAEL--- 228
            +   I++    D  L      A         +        +     + +   L  +    
Sbjct: 818  NVNTIIANARTDSLLDESQRLASELRARSEELQSRQEDLQLSNAELEEKATLLARQNHDI 877

Query: 229  EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            EV     ++ R+  EE        +  KS FLA+MSHELRTPLN++L  + ++       
Sbjct: 878  EVKNFEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRN 937

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            L+     EY   IH +G  LL LIN+ILDLS++EAG+ ++    ++L+DIV +       
Sbjct: 938  LS-PKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQATFSP 996

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-------RVHVTV 393
               EK +     + P L   +  D   + QV+ NLLSNAVKFT  G              
Sbjct: 997  ITAEKGLRFTVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSGAGAG 1056

Query: 394  GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            G   G+    S+ D G GIA   +  +  +F QG         G GLGL I + +    G
Sbjct: 1057 GRAPGQAVLFSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLG 1116

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G+   RS+   G      LP         +    + + 
Sbjct: 1117 GEIQARSEFGRGSTFTLQLPMAPAATTSSDGPQPAAEQ 1154


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1205

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 4/281 (1%)

Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           K + + L  Q    ++   E+E+AKS  ++  K+ E     KS FLA+MSHELRTPLN++
Sbjct: 508 KVSNEELEEQTHILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSL 567

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           L  S+ +       L+ E   E    I++SG  LL LIN++LDLS+IE+G+  ++   + 
Sbjct: 568 LILSKDLADNKRKNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVV 626

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386
           L    +E +   +L+A EK +++    D  L  V   D   + Q++ NL+SNA+KFT   
Sbjct: 627 LRKFAKELMSTFKLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER- 685

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G+V V +   +      S+ D+G GI E +   +  +F Q   +      G GLGL I++
Sbjct: 686 GKVQVEIKKQNKDKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISR 745

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            +    GG+  ++SK+ +G      LP       I E  +E
Sbjct: 746 ELAKLLGGEIFLKSKVNQGSTFSLSLPIETNEISISEKENE 786


>gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 886

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 139/269 (51%), Gaps = 14/269 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L   ++   +     ++ A+  N AKS FLA+MSHELRTPLN ILG+++++ 
Sbjct: 393 QLRTSFTELETRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQILG 452

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                    E  +  +  IH+ G HLL LIN++LDLS+IEA + EL+  AI L   ++  
Sbjct: 453 R---AKTLPEKERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGV 509

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + + ++R+ +K IE   + D +L + +  DEK +RQV+LNLL NA+KFT   G + + V 
Sbjct: 510 VEICRVRSDQKGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDK-GSITLKVE 568

Query: 395 WTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             +             + D G GIA  ++  +   F Q     K   +G GLGL I+Q I
Sbjct: 569 VIASNATMPLPQLKFQVLDTGVGIASDQVNKLFQEFEQVGD-RKRQAEGTGLGLAISQKI 627

Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPNT 475
           +   GG+  + S L  G        LP  
Sbjct: 628 VELMGGKIEVESHLGIGSNFYFQVALPIA 656


>gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 769

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   AEL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 500 RRLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG   L   
Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHRE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   + ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 620 RIDLVPLIEESLRFTAIPAAEKNIVIEQRICSGM-ALMADRRAMKQVLLNLLSNAVKFTD 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V           ++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 679 NGGRIAVRTRRV-DGAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ A HGG+  IRS+   G  +   +P
Sbjct: 738 SRSLTALHGGRMKIRSREAVGTVISLRIP 766


>gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W]
 gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W]
          Length = 896

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 987

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 3/252 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +    E ++ A+  N AKS+FLA+MSHELRTPL +I+G++E++    + P+
Sbjct: 458 RNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELL-NRALTPI 516

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+     +  I  +G HLL +IN++LDLS+IEAG  ++  + + L  +V+  +  +Q  
Sbjct: 517 ANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDTVQPV 576

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
                 ++  +       +  DE  +RQ++LNLLSNA KFT   G++ + +  T     Y
Sbjct: 577 IVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFT-TNGQITLRISGTPE-MVY 634

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            ++ D G GI   +   +   F Q   +      G GLGL +++ +    GG   + S L
Sbjct: 635 FAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLESAL 694

Query: 463 REGVEVIAILPN 474
            EG      LP 
Sbjct: 695 GEGSTFTLSLPR 706


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++      F   T  + +            +  I +   A+++    R+ AEE N AKS 
Sbjct: 713 IIVRNQVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSA 772

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTP+NAILG   ++    +    +    +Y      + + LL+L+N+ILD 
Sbjct: 773 FLANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLHLLNDILDF 828

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IE+G+  L      +  ++R+  ++L    + K +E+   IDP+L   V  D   ++Q
Sbjct: 829 SKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGDSMRLQQ 888

Query: 371 VILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NL  NA+KFT +G  V  + V          +  ++D G GIA     ++ + F Q 
Sbjct: 889 ILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQA 948

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPN 474
             +      G GLGL I+Q  +A  GG   + S+  +G        LP 
Sbjct: 949 EASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITLPL 997


>gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1001

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 22/276 (7%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +   +     +  + AE  N AKS FLA +SHE+RTP+   +   +    + +    ++ 
Sbjct: 603 QRNRSILAMRQATEEAEAANRAKSEFLAVVSHEIRTPMTVTIAALQ----QVLESSLDDE 658

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y+   + +   LL+LIN+ILD S+IEA +  L ES  +L + +   + +L + A++K
Sbjct: 659 QRQYLTMANDASDSLLSLINDILDFSKIEAEKLVLEESPFNLRECIENVVAILGVNARQK 718

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQY 402
            + +    + SL  +   D+  +RQ+++NL+SNA+KFT   G+V V V           +
Sbjct: 719 GLRLELASNASLPDLLLGDQHRVRQILVNLVSNAIKFTEQ-GQVSVKVDAEQQDDHHLVH 777

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +++ D G GI +     V  SF Q   +      G GLGL I + ++   GG   + S  
Sbjct: 778 VAVCDTGIGIDDSLRERVFESFSQADSSTTRKYGGTGLGLAICKGLVEQMGGVIGVESCQ 837

Query: 463 R--EGVEVIAILPNT-----------RVLNFIPEDN 485
              +G      LP             RV   +P +N
Sbjct: 838 DDTQGSCFYFSLPMRVADDALVPPMDRVAPRLPVEN 873


>gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1082

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 14/276 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I +++ A+      ++ AE+ +  KS FL+ MSHE+RTP+NA++G + ++  +     
Sbjct: 687 EDITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQD----N 742

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EY+  +  S  +LL LIN+ILD ++IEAG+ EL ++  ++  + +  +   + +
Sbjct: 743 PAPRQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKNK 802

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A+  +  +  K+D  + + +  D+  + QV+ NLLSNAVKFT   G V + +        
Sbjct: 803 AEANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFT-RDGTVFLKLELEQLRYD 861

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  I+D G GI+   I  +   F Q   + +S   G GLGL I + ++  H     
Sbjct: 862 KVTIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTIK 921

Query: 458 IRSKLREGVEVIAILPNTRV----LNFIPEDNHEST 489
           + S + EG +    +   +        +P+   ES+
Sbjct: 922 LVSNIGEGTQFSFSIVFDKAEVDEAEAVPQKEKESS 957


>gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 448

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 167/396 (42%), Gaps = 11/396 (2%)

Query: 86  NLSLGKKVMNSDIKIGE-----VYVWRIWLLVGQIAIGLCWTLLTLVEP-GTWTPEYLTI 139
            L+  ++    D            +      V    I L        +    W+ E +  
Sbjct: 41  RLAALRRYKVLDTPPEPGFERITALAVRLFAVPVCVISLVDECRVWFKSKVGWSGEQVQR 100

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
            +S      L    +      +   L+  P V A       +   L       L T    
Sbjct: 101 DESLCSWAILQKELMVIHDARFDGRLACNPWVQAEPGIRFYAGAPLTSPDGFNLGTLCLI 160

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            T       +   + L+  A       EL ++   ++++R  AE  N AK  FLA +SHE
Sbjct: 161 DTQPHATFDEPQRRTLADLAAIVVDELELRLSLESAEQSRLAAEAANRAKDEFLALLSHE 220

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN I+G++++++    G +  +   E +  I R+ +    LI ++LD++RIE G++
Sbjct: 221 LRTPLNPIIGWTQMLKR---GSVAADKQVEVLEIIERNAKLQNQLIQDLLDVARIEQGKF 277

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
                 + L  +V+  +  ++  A++  + +  ++   L  V  D   M+QV+ NLL+NA
Sbjct: 278 SHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAERLPEVMVDPTRMQQVVWNLLTNA 337

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KFT  GG V + +   +     + + D+G GI+   IP +   F Q   A    + G+G
Sbjct: 338 IKFTPSGGWVQLHL-VEAADCLCLVVSDSGTGISPAFIPHLFERFRQAGDAGTRRQGGLG 396

Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           LGL I + I+  HGG+   +S    +G      LP 
Sbjct: 397 LGLFIVRYIVELHGGRVWAKSDGQGKGAVFTVELPL 432


>gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 416

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 17/279 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +    +  ++ ++E   LI   ++ K    E  +R          F+A++SHELRTPL
Sbjct: 151 RSVRNCKIMRVTLKSEVRYLILLRDITKEKEVEAMRR---------DFVANVSHELRTPL 201

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +I G++E +  + +   + ET   ++  I      +  LIN++LDL ++E+G    S+ 
Sbjct: 202 TSIHGYAETLAEDDL--EDKETVYRFLSIIENESARMTRLINDLLDLEKLESGEASFSKE 259

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT- 383
            + L ++V   + +++  A EKN+ I   +D  +  V  D   + Q++LNL+ NAVK+T 
Sbjct: 260 DVELGEVVNYVMRIVEPLASEKNVSINVDVDEGI-FVEGDFDRLVQLLLNLVDNAVKYTF 318

Query: 384 -AIGG--RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
               G   + +   +       I ++D G GI E  +  +   F +   A      G GL
Sbjct: 319 AKEHGPKEIWLRA-YAQNNSAMIEVEDTGVGIPEDSLKHIFERFYRVDKARSRKMGGTGL 377

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           GL I + I+  HGG   + S+   G  +   LP  +V  
Sbjct: 378 GLAITRFIVEKHGGTISLESEYGTGTILKVKLPLKKVFE 416


>gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
 gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
          Length = 896

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAKKNVEFMIEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTHLSDDMQSISNDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
 gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
          Length = 681

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 24/270 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A+    +  + AE  N  KS FLA+MSHELRTPLNA+LG++++ + +     
Sbjct: 313 EDITERKQAEVQLQKALQTAETANHTKSVFLANMSHELRTPLNAVLGYTQIFQQDD---T 369

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+  +E I  IHR+G++LL LIN+ILD+S++EAG+ E     + L   ++  + + Q+R
Sbjct: 370 LNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEFYPKDMKLSQFLQGIVQLFQMR 429

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
            Q+K IE   K   +L  +  ADEK +RQ+ +NLLSNA+KFT   G V  TV     +  
Sbjct: 430 TQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAIKFTDK-GSVTFTVKTEQAKIK 488

Query: 400 -----------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                              +  I+D G GIA  E+  +   F Q      +   G GLGL
Sbjct: 489 NEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFLPFQQADKNHYNKPMGTGLGL 548

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I ++++    G   + S L +G       
Sbjct: 549 SITKNLVDMMDGSIHVESLLGKGSIFWVEF 578


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 9/248 (3%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             RK+ E     K  F++ +SHELRTPL +I G   ++    +   ++E  K  +     S
Sbjct: 1114 ERKQIE---RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSA-DSEQGKRLLEIATDS 1169

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             + L+ LIN+ILD+ RIE+GR ++   +  L D++   + ++Q  A +  +++       
Sbjct: 1170 TERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVSSPS- 1228

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
               +W D   + Q + NLLSNA+KF+     V + V    G    +++KDNG GI   ++
Sbjct: 1229 -IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQHYGDELLLTVKDNGRGIPADKL 1286

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             ++   F Q   +      G GLGL I QSI+  HGG+    S L EG      LP   +
Sbjct: 1287 DSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVLGEGSNFYFTLPILPI 1346

Query: 478  LN--FIPE 483
                 +P+
Sbjct: 1347 SQNSELPD 1354


>gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 473

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 151/315 (47%), Gaps = 18/315 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V+  F  V +AL              ++G +   +   T +   + + +++     +
Sbjct: 174 RLLVYSVFLAVAIAL----------FSYFISGFVTKPIKDITDVIREMGRGHLRQKVEVS 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              ++I       ++S    +R E  + A+S F+A+ SHEL+TPL++I   ++ +  +  
Sbjct: 224 GSKEIIELGNAFNAMS----QRVESLDKARSEFVANASHELKTPLSSIKVLAQSLVQDP- 278

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + + YKE++ DI      + N+IN++L L +++  + +++ + + L  ++ E + +L
Sbjct: 279 -NADIKVYKEFMYDIDSEIDRMNNVINDLLTLVQLDKDKPDITYTDVDLERLINEVLKVL 337

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A  KNI++  + +  + S+  D   ++Q+++N++ NA+K+T  GG+V V        
Sbjct: 338 RPLAAAKNIKLNYRCEEGV-SIRGDAPKLKQMLINIIDNALKYTPEGGKVDV-CLRKKDG 395

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + DNG GI   ++P +   F +   A   A  G GLGL IAQ I   H G   + 
Sbjct: 396 EALIEVVDNGMGIPRADLPYIFDRFYRVDKARSRATGGTGLGLSIAQKIAYLHKGTINVE 455

Query: 460 SKLREGVEVIAILPN 474
           S   EG      LP 
Sbjct: 456 SSEGEGTRFSIKLPL 470


>gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1333

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 19/277 (6%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+D     LE  + L++E    A+E +  KS+FLA+MSHE+RTP+  ++G +E++    +
Sbjct: 700 ERDIEAQVLEKRQLLANEA--AAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVGL 757

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +   +E   +I RS   LL +IN+ILD S+IE+GR ++ E   SL  +++E   ML
Sbjct: 758 ----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKML 813

Query: 340 QLRAQEKNIEIFQKIDPSLS---SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              A+ K +    +I   ++    V  D   +RQV+ NL  N +KF    G V + V   
Sbjct: 814 SFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQNGIKFCHE-GHVKLNVFVE 872

Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                 I +K    D G GI E  +  +   F QG  +      G GLGL I+++++   
Sbjct: 873 QETNDTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELM 932

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            G+  + SK  EG      +P  +     P+  + +T
Sbjct: 933 NGRMALASKRGEGTTATFWIPFKK-----PQKANSAT 964


>gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
 gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
          Length = 854

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 140/252 (55%), Gaps = 9/252 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +  +   ++    AE  NLAKS+FLA+MSH++RTP+NAI+GFS+++      P   +
Sbjct: 448 TYEQQIRGHMEDALHTAEAANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP---D 504

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+Y   I  S QHLLNLIN++LD+S+IE+G   L+ S +++ DIV+E   +++ +A++
Sbjct: 505 KVKKYAEKIVISSQHLLNLINDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQ 564

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K   +    D      +  D+  + Q++LN+LSNAVK+T   G +   +   +  G   +
Sbjct: 565 KKQTLIISSDNVEYGWIKTDKLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFA 624

Query: 405 -----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I DNG G+++G I  +   F +    +    QG GLG+PI ++++   GG   ++
Sbjct: 625 KYKFKISDNGIGMSDGYIKEIFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVK 684

Query: 460 SKLREGVEVIAI 471
           SK  EG      
Sbjct: 685 SKKGEGSTFEVT 696


>gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 718

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/478 (22%), Positives = 189/478 (39%), Gaps = 42/478 (8%)

Query: 8   KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67
               V      T        P    F  E+       +    P+  L  LL +     F 
Sbjct: 267 VAGKVARTGRATLLRDVSRDPDYRAFAPEVRAELAAPIGADPPLAVL--LLDSPRSVAFG 324

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
           ++ +  + +L  LAV     +L  +                 LL     +G  +  +   
Sbjct: 325 ESEVAFVDALCHLAVNPLRRALHYQ----------------QLLETSAHLGQVFASMPNG 368

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                    +  +  A L+I            P A+   F+  +  +          L +
Sbjct: 369 LVLMDQQGRVLRHNPAWLMIWGLT--------PDAMRDPFYIPLDLVPLLLPRMRDPLAL 420

Query: 188 SL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           +   A    +     + +          +L     +D   +       +SD TR+R  E 
Sbjct: 421 TELCAEGQRSPTEVQSLLVRLNNPHQEVMLLSAPTRDSFGSLTGRLWIVSDVTRER--EA 478

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS FL+ +SHELRTPL +I+G++E++      P      +E++  ++    HL  ++
Sbjct: 479 DRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTPG---EQREFVKTVYNEANHLYQIV 535

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L ++R+EAG   L   A+SL  I+ +    L  +   K+  +   I P L  V+AD 
Sbjct: 536 EDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTML-IDIPPYLPPVYADR 594

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEI 417
             +RQV++NL++NAVK++  GG + +TV   +         +   ++I D G GIA  ++
Sbjct: 595 DKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPEDL 654

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           P +   F +          G GLGL IA++++  HGG+    SKL  G      LP  
Sbjct: 655 PRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLPVA 712


>gi|121727650|ref|ZP_01680753.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|153828559|ref|ZP_01981226.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|229523849|ref|ZP_04413254.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|254285229|ref|ZP_04960194.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|297579350|ref|ZP_06941278.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|121630037|gb|EAX62444.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|148875954|gb|EDL74089.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|150424501|gb|EDN16437.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|229337430|gb|EEO02447.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|297536944|gb|EFH75777.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 736

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 681

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 269 KSQDEIRHLIDTFNQKTINLEVEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 328

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H++ L+NEILD S+IE G++EL  S+  L  I+   
Sbjct: 329 KDELTA----KQRQHLTSLYESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSI 384

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 385 KSIYSSLCFEKGLKFHLNSEITDTRWYYGDKARLRQIIFNLLSNAVKFTER-GFVTIGLA 443

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                 G    I ++D+G GIA+  +  +   F Q          G GLGL I + I A 
Sbjct: 444 EEATQEGHYLIIKVQDSGIGIAKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAAL 503

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G   ++S++  G            +    ++ ++  + K Y
Sbjct: 504 MNGTVSVQSEVGRGTCFEVR--VKLAITEPIKEEYKPIKAKTY 544


>gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 896

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN++   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
 gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
          Length = 1168

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 144/313 (46%), Gaps = 26/313 (8%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                     + LA +     S+F ++     +                     A  L+  
Sbjct: 750  PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 791

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++ AE+ + AK+RFLA++ HE+RTP+  +LG SE++    + P      + Y   I  +
Sbjct: 792  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 847

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356
            G+HLL+LIN+ LDL+RIE+GR EL     +L  ++++   ++   A +K +        P
Sbjct: 848  GEHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLP 907

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415
                   D   +RQ++LNLLSNAVKFT+  G + +        R  +  ++D GPGI++ 
Sbjct: 908  PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 966

Query: 416  EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q   A  +A   G GLGL I + +     G+  + S+L  G      LP 
Sbjct: 967  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026

Query: 475  TRVLNFIPEDNHE 487
              V++   E   E
Sbjct: 1027 PLVVDANAESEGE 1039


>gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 456

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           I+S+ +  I++A +          +     K +    S + +        E+ K++    
Sbjct: 166 ILSVFLTIITIAFLSRVITIPLIRMKQATEKLSKGDFSVRLQVKGGDELAELGKAIQTLA 225

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R   E     ++ FLAS+SHELRTPL  + G++++        +  E    Y+  I+   
Sbjct: 226 RD-LEYLKKERNEFLASISHELRTPLTYVKGYADIARR---PNMEEEERNRYLSIIYEEA 281

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +H+  L+ ++ +L++++   +++ +   +L   +++    +    Q K + +  + + ++
Sbjct: 282 EHMQKLVKDLFELAKMDQHSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQCEKNI 341

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +V  D+K   QV++NLL NA+K+   G  V +           I + D G GI E ++P
Sbjct: 342 -TVHIDQKRFEQVMINLLDNALKYADQGSTVSIDARAEKDNIVMI-VSDEGRGIPEEDLP 399

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   +      G GLGL IA+ I+  HGG     S+  +G  +I  LP
Sbjct: 400 HIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 149/314 (47%), Gaps = 8/314 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             +    +V   +    M  ++L  +L     +  ++   +   + +   +    + E +
Sbjct: 314 ARIWTIGLVAFSAFATYMLGYLLVKNLRMAHESISAYNQTLERQVEEGVAQANKSRMETE 373

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L  +L +    + E  ++A      KS FLA+MSHE+RTP+N ++G + +++   +   
Sbjct: 374 NLNRDLRLQTERASEMAEKAILAERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTEL--- 430

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NET +EY+  +  S + LL LIN+ILDLS+IEAG+  + +  + ++D+  +   +    
Sbjct: 431 -NETQQEYVETMLNSTESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASN 489

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398
           AQ K +E+              D   ++QV+ NLLSNA+KFT  G    R+ +      G
Sbjct: 490 AQAKGVELVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDG 549

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GIA   + T+  SF Q   +      G GLGL I+Q ++   GG+  +
Sbjct: 550 ARIRFEVVDTGIGIAPEVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQV 609

Query: 459 RSKLREGVEVIAIL 472
            S+L  G      L
Sbjct: 610 ESELGVGTTFTFAL 623


>gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
 gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
          Length = 798

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 16/270 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            +   +N   L       D+    E  K      R++AEE +  KS FLA+MSHE+RTPL
Sbjct: 545 RNTQSTNPDRLEMICVNYDITELKETQKQ-----REKAEELDRLKSAFLANMSHEIRTPL 599

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS ++        + E  K+++  I ++ + LL LI+++LDL++IE+G  EL   
Sbjct: 600 NAIVGFSTLLVDT----DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLV 655

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L ++ +E ++ ++++     + +    D     +  D+  + Q+I N ++NA+K T+
Sbjct: 656 EVDLRELCKELVVSMRIKVPA-EVALCVVPDLPSYIMRCDKVRLTQIISNFINNAIKHTS 714

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + +            S+ D G G++      V   F +G     S +QG GLGL I
Sbjct: 715 K-GTILLGYEIRWD-EIEFSVTDTGDGMSPEVQRHVFDRFYKG----NSFKQGTGLGLSI 768

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +SI+   GG+  + S++ +G      LP 
Sbjct: 769 CKSIIEQVGGKIGVESEIGKGSRFWFTLPR 798


>gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
 gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
          Length = 806

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 12/270 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A     + +  AE    +KS FLA+MSHE+RTP+NAILG  ++++  ++     E  +  
Sbjct: 424 AIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLKNTSL----PEELRAV 479

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           + +   SGQ LL +IN+ILD S+IE+ + +L +++ SL +++      L     EK I  
Sbjct: 480 LKNASYSGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVSEKRIGF 539

Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIK 406
               D S    W  D   ++Q++LNL SNAVKFT   G V +      +      Y+ + 
Sbjct: 540 TVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDK-GSVKINASSKIYEGKEAIYLEVV 598

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G+++     +   F Q   +      G GLG+ I  S++   GG+  I+SK   G 
Sbjct: 599 DSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSKQGLGT 658

Query: 467 EVIAILPNTR---VLNFIPEDNHESTQYKC 493
            V   LP  +   + +  P+ + ++   K 
Sbjct: 659 TVTIKLPLPKANNIADKAPKKSFKAPNLKG 688


>gi|323699593|ref|ZP_08111505.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1165

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 18/258 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D + E   A+     TR+ AE  N AKS FLA+MSHE+RTP+NAI+G +E+     +   
Sbjct: 640 DDVTENRKAQEDLLRTREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTEITLQTDL--- 696

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  ++Y+  +  S QHLL++IN+ILDLS+IEA + EL      L   VR  I  L+++
Sbjct: 697 -TDDQRDYLKTVKDSAQHLLSIINDILDLSKIEARKLELDHVDFDLPFHVRTTIKGLEVQ 755

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A++K +++  +ID +    V  D   +RQV++NL  NA+KFT   G + + VG   G   
Sbjct: 756 ARQKGLDMVLEIDEAAPNCVKGDPLSLRQVLVNLAGNAIKFTHR-GTIAIRVGPGQGPAP 814

Query: 400 ------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                 G   +++D G GI    + ++  SF Q       A  G GLGL I + +++  G
Sbjct: 815 DEARTVGVAFAVEDTGIGIPREFLDSIFQSFSQ----TTRAFGGTGLGLAICKQLISLMG 870

Query: 454 GQFLIRSKLREGVEVIAI 471
           G  ++ S + +G      
Sbjct: 871 GDIVVESTVGKGSTFSFT 888


>gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
 gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
          Length = 1516

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 120/253 (47%), Gaps = 11/253 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I +   A    +  R  AEE N  KS FLA+MSHE+RTPLN +LG  ++++  ++     
Sbjct: 1118 ITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLNGVLGMLQLLQSTSLDV--- 1174

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               KEY      S   L  L+++ILDLSR+EAG+  +      L + V     + + +A 
Sbjct: 1175 -EQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVPFDLSETVNVVNELFKTQAI 1233

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            E  I +   ID  +   +  D   ++QV+ NL+ NA+KFT   G++ V+           
Sbjct: 1234 ESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTHA-GKIAVSSHLLPSSDPKR 1292

Query: 401  --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 SI D G GI   +I  + T F Q S       QG GLGL I + ++   GG   I
Sbjct: 1293 ISLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAGLGLSICKHLVTLMGGNISI 1352

Query: 459  RSKLREGVEVIAI 471
             S L +G  V   
Sbjct: 1353 SSVLGQGTTVNFS 1365


>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1314

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 12/258 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  ++   + +  AE  + AKSRFLA+MSHE+RTP+NAILG S +   +       
Sbjct: 562 ITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQA----KE 617

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  I+ SG  L+ L+N+ILDLS+IEA R +L      L +++++    +    +
Sbjct: 618 ARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVLPAMR 677

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT------VGWTS 397
            K +E+   I      ++  D   + QV+ NLLSNA+KFT   G V +T      V  T 
Sbjct: 678 NKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHE-GEVRITLTAEPYVQLTD 736

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD+G GI     P +  SF Q   +      G GLGL I + +M    G+  
Sbjct: 737 HYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHGKIT 796

Query: 458 IRSKLREGVEVIAILPNT 475
           ++S L +G      LP  
Sbjct: 797 LQSSLGQGSTFTCRLPLQ 814


>gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 158/277 (57%), Gaps = 2/277 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     L  +   + + +   +   AEL +A +     ++RAE  N AKS FLA+M
Sbjct: 495 QVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANM 554

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFSE+++ +  GPL +E Y EY  DI  SG+HLLN+IN+ILD+S+IEA
Sbjct: 555 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 614

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G   ++   I L  ++ E +    + A+ KNI + Q+I   L +++AD + M+QV+LNLL
Sbjct: 615 GHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQVLLNLL 673

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNAVKFT  GGR+ +           ++I D+G GI +G +  +   F Q       ++ 
Sbjct: 674 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKG 732

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++S+   HGG   I S    G  +   +P
Sbjct: 733 GSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 769


>gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
 gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
          Length = 1140

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 165/353 (46%), Gaps = 11/353 (3%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +   A LL+ ++        L Y   L+  P   AL +  +     +   L  +      
Sbjct: 568 LVHFAALLMVVAAITGVLLSLIYTNSLTPLPATNALLSAML---WKVFFILLIIAGVVAW 624

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F         +  +         + I   E       + +++AE  N AKSR+L  +SH
Sbjct: 625 LFVLAHESRLVAQEESQRQNRLLQEEITAHEETDRKLQQAKEKAEAANSAKSRYLTGISH 684

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELR+PLN+ILG+++++E        +E  +  +  I  SG+HL +LI  +LD+S+IE+GR
Sbjct: 685 ELRSPLNSILGYAQLLEH---DEEISENKRYQLSVIRNSGEHLSDLIEGLLDISKIESGR 741

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            ++    + +  ++ + + M +L+A+EK +    +    L+  V  DEK +RQ+++NLLS
Sbjct: 742 LDIHRDQVRISALLDQLVYMFRLQAEEKGLRFEYQCHSVLAEYVTTDEKRLRQILINLLS 801

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT  GG V  +V +   +    SIKD G GI E E+  +   F +          G
Sbjct: 802 NAVKFTERGG-VSFSVRYR-SQVAEFSIKDTGVGIPEDELERIFRPFERVRTPGSPQVSG 859

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            GLGL I + ++   GG   + +    G      +  ++V+   P     S+Q
Sbjct: 860 TGLGLTITRLLVDIMGGDLEVVNNPEGGCTFTVWMMLSQVV--TPVSVQPSSQ 910


>gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 642

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 141/276 (51%), Gaps = 14/276 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI ++   K L  E ++ A   N  KS F+A MSHE+RTP+N ++G ++++    +    
Sbjct: 241 LIKDITEQKKLLIE-KETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDLLLDTPL---- 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  KEY+  I +SG+ LL +IN+ILD S++E+G  EL+E   +L   + E    L  +A
Sbjct: 296 DEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAETFDTLMPKA 355

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ- 401
            EKN+E    I P +   +  D   +RQ++LNL+ NA+KFT   G + V++      G  
Sbjct: 356 MEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPR-GSIGVSIDKAEAEGAN 414

Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              + ++KD G G+ E ++P +   F Q    +   E G GLGL I + ++    GQ   
Sbjct: 415 VRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQLMDGQIYC 474

Query: 459 RSKLREGVEVIA-ILPNTRVLNFIPEDNHESTQYKC 493
                 G      IL    +L  IP   HES   K 
Sbjct: 475 EPNPGGGTIFRFHILIQAELLTSIP--VHESITEKA 508


>gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1484

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%)

Query: 139  IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
            +  ++ L  AL  S +    LP         V+   S      +H+  +           
Sbjct: 839  LAINSGLGSALPASVVI---LPILYEDQVLGVIELASFSRFSEVHLAFVDQFVNTIGVSI 895

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                          +      E      EL+ + +  +E        +  KS FLA+MSH
Sbjct: 896  NTIIANARTESLLSESQRLTTELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSH 955

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  + ++     G L+ +  + +   IHRSG  LL LIN+ILDLS+IEAGR
Sbjct: 956  ELRTPLNSLLILARLLADNPEGRLSGQEVQ-FAATIHRSGSDLLQLINDILDLSKIEAGR 1014

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++    + L+ I+       +  A ++ +     +   +   +++DE+ ++Q++ NLLS
Sbjct: 1015 MDVRPKKLPLVKILDYVNATFRPLAVDRRLSFEIAVGEDVPREMFSDEQRLQQILRNLLS 1074

Query: 378  NAVKFTAIGGRVHVTVGWTSGRG------------QYISIKDNGPGIAEGEIPTVLTSFG 425
            NA+KFT+ GG V + V  T G                 ++ D G GI   ++P +  +F 
Sbjct: 1075 NALKFTSSGG-VTLRVERTPGAEFEEEALRSADAVIAFAVTDTGIGIPPEKLPVIFEAFQ 1133

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPE 483
            Q          G GLGL I++ I    GG+ +  S+L  G      +P   + V      
Sbjct: 1134 QSDGTTSRKYGGTGLGLSISREIAGMLGGRIVAESELGVGSRFTLYVPVHYSGVAPVPDP 1193

Query: 484  DNHEST 489
             +  +T
Sbjct: 1194 SDPRAT 1199


>gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 592

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 10/276 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            Y    + + +V  +      D       VA        +R E     ++ F++++SHEL
Sbjct: 327 IYPVERMIRVHVTPIK----NDKTTERGAVAVLRDVTELRRLE---QIRTEFVSNVSHEL 379

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL +I G+ E +  E          + ++  I      L  LI ++L+LS++E+    
Sbjct: 380 RTPLTSIKGYVETLLDER--DCEPGVRERFLQVIKDETDRLERLITDLLNLSQLESASDS 437

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
             +  ++L  ++   +  +  +A  K I++   +   ++ +      + ++ +NL+ N +
Sbjct: 438 FDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDNGI 497

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K+T+ GG+V + V +      +  I D G GI E ++P +   F +          G GL
Sbjct: 498 KYTSEGGQVKIKV-YEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVDKTRSRKLGGTGL 556

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GL I + I+  H G   + SK+ EG + I  LP  +
Sbjct: 557 GLSIVKHILERHNGGIEVESKVEEGTKFIFWLPKPK 592


>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 966

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             ETR  A +    KSRFLA MSHE+RTP++ +LG  E++    + P      K+Y   I
Sbjct: 286 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTP----QQKDYTQTI 341

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           +RS +HLL +INEILDLS++EAG   L      L D +   + +L ++A++K +E+   +
Sbjct: 342 YRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILL 401

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409
           +P+L   +  D   ++QV++NL++NA+KFT   G + + V            Y +I+D G
Sbjct: 402 EPNLPRYLKGDGMRLQQVLINLVNNAIKFT-KSGHIIIRVTPRVISQDHINIYFAIEDTG 460

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++   P +   F   S A      G GLGL I Q ++   GG+  ++S+  EG    
Sbjct: 461 MGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEEEGSIFW 520

Query: 470 A---ILPNTRVLNFIPED 484
                LP+       P++
Sbjct: 521 FNATFLPSELSETSAPKE 538


>gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora
           owczarzaki ATCC 30864]
          Length = 1474

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +     +   E  K  ++ N AKSRFLA+MSHE+RTPLN ILG ++++   ++     
Sbjct: 616 LTDQRRVNAAESEALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSLNN--- 671

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I  S Q LL +IN+ILD S+IEAG+  +     + + I    + +L   A 
Sbjct: 672 -EQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAA 730

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
            KN+ +   IDP L  V   D    +Q+++NL+SN +KFT   G V +            
Sbjct: 731 TKNLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFT-TSGSVSLRCLLDSEVDDDH 789

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI    +  +   F Q   +I  +  G GLGL I +S++   GG   +
Sbjct: 790 LLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGV 849

Query: 459 RSKLREGVEVIAILPNTRVLNF 480
            S   EG      +   +    
Sbjct: 850 DSTRGEGSRFWFTIKFRKPTET 871


>gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
 gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
          Length = 911

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 162/350 (46%), Gaps = 27/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  L ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 177 VFVATLMLLFCLCLAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            +LE+     D  +KRA+E  
Sbjct: 231 GELNILKNGINAMAMSLTAYHEEMQHNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN +LGF+  +    +      T ++Y+  I RS  +LL++IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRT----TQRDYMQTIERSANNLLSIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E +++L   A EK +E+    D S+   V  D 
Sbjct: 347 DVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNVIGDA 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVL 421
             ++Q+++NL+ NA+KFT   G + + VG      S     I ++D+G GI+E +   + 
Sbjct: 407 LRLQQILINLIGNAIKFTEK-GYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQTQLF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +I     G GLGL I Q ++   GG+    S+  +G   +  
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFMIR 515


>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
 gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
          Length = 1268

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 8/243 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   + +++AE  N AKS FLA+MSHE+RTP+N +LG  +++   T+    ++   +YI
Sbjct: 520 EAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              + + + LL L+N+ILD S+IEAG+ EL     SL D++++  ++    A++K +E+ 
Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVL 635

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407
             +   +   +  D   ++QV++NL+ NA+KFT  G   + +              SIKD
Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   + + F Q   +I     G GLGL I++ ++   GG+  + S+   G  
Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755

Query: 468 VIA 470
              
Sbjct: 756 FSF 758


>gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 820

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/259 (38%), Positives = 148/259 (57%), Gaps = 14/259 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +L+ +K+L+D  ++ A+  N AKS FLA+MSHELRTPLN ILG+++++       +  +
Sbjct: 341 TQLKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGR---SKVLPD 397

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  IH+ G HLL LIN+ILDLS+IEA + EL+  A  L   ++  + +  +R Q+
Sbjct: 398 KERQGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQ 457

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398
           K IE   + D  L + + ADEK +RQV++NLL NA+KFT   G V + V  T        
Sbjct: 458 KGIEFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDR-GSVALRVQRTGLEESDPR 516

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                SI D G GIA  +I  +  +F Q     K   +G GLGL I+Q ++   GGQ  +
Sbjct: 517 TKLRFSIVDTGVGIASADINKLFQTFEQV-GEQKRKVEGTGLGLAISQQLVQLMGGQIQV 575

Query: 459 RSKLREGVEVIA--ILPNT 475
           +S+L  G E     ILP  
Sbjct: 576 KSQLGVGSEFFFEIILPLA 594


>gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 522

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E  +   +  +  A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            
Sbjct: 276 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 333

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +  Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + 
Sbjct: 334 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK- 390

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+           +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ 
Sbjct: 391 NVRFVFDQGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 448

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+E +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G 
Sbjct: 449 DTGMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 504

Query: 467 EVIAILPNTRVLNFIPE 483
                LP   +    P+
Sbjct: 505 TFWFTLPLKEIKENEPK 521


>gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 733

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 4/239 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + AKS FLA+++HELRTPL  ++G S  +   ++GPL N+  + Y+  IH SG+HLL L
Sbjct: 356 AHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPL-NDKQRSYLKTIHDSGEHLLEL 414

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVW 362
           IN+ILDLS++EAG+  LS S  SL  + R+ + + + +AQE  +E+  +  I        
Sbjct: 415 INDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLESLIPSEFERFC 474

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD++ +RQ++ NLLSNA+KFT  GGRV +   W         ++D G GI+  + P +  
Sbjct: 475 ADQRRVRQILFNLLSNAIKFTPAGGRVTLR-SWVENGKALFQVEDTGIGISLSQQPLLFQ 533

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F Q   +   + +GVGLGL + + ++  H G+  + S    G      LP       +
Sbjct: 534 KFQQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVESTEGIGSIFTVELPAQSPTATL 592


>gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 482

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/435 (25%), Positives = 179/435 (41%), Gaps = 45/435 (10%)

Query: 74  MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT 133
            W+   + +     +   ++                L    I I    TLL ++    + 
Sbjct: 52  GWAYAIILLLILVTATSDRLRRQG-----------QLQWSSITIVTATTLLPILSCTAFG 100

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
                    + L +  +   +S+     A   +    ++ L    ++         A   
Sbjct: 101 FTDNNFVYLSVLGVFAAGIMVSSRAPYQATQAAILLYIILLLAADVIGQPRPTWFSAIGK 160

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEEN------ 246
              L         L  +   ++        D   + E  + L  ET+   E         
Sbjct: 161 ILFLVILLLSAATLSWAAAYVVRGTINWAIDTAQKSERREQLLRETQATLERALLEWDLL 220

Query: 247 ----------------------LAKSRFLASMSHELRTPLNAILGFSEVIELETM---GP 281
                                  +KS F+A+MSHELRTPLN I+GFS  +          
Sbjct: 221 NEQLYRTTLELEEARAAAEAAYRSKSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDV 280

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E   + I +I RSGQHLL LIN+ILDL++IEAG+ EL+ + ++L  ++ E I   Q 
Sbjct: 281 KIDEQVLQDIAEIRRSGQHLLGLINDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQA 340

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
              ++ I++ ++   SL +V ADE  +RQV+LNL+SNA KFT + G + V     + +  
Sbjct: 341 LIGDRPIQLRREYHDSLPTVLADEVRIRQVLLNLVSNACKFTHM-GEIAVGARAETDQ-V 398

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GIA  +   +   F Q   A      G GLGL I + ++  HGG+  + S+
Sbjct: 399 VLWVRDTGIGIAPADQERIFQQFEQVENADTRHHAGTGLGLSICRWLIELHGGRMWLESE 458

Query: 462 LREGVEVIAILPNTR 476
           + +G      LP TR
Sbjct: 459 VGKGSIFFFSLPRTR 473


>gi|291519879|emb|CBK75100.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 881

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 142/259 (54%), Gaps = 12/259 (4%)

Query: 231 AKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           A  L++E R  + A+  N AKS FL+++SHE+RTP+N I G +E+I  E      +E+  
Sbjct: 341 ATDLTEENRLIQEAQSANAAKSNFLSNISHEIRTPINVISGMNELILREC----KDESII 396

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y  +I  + ++L +LIN++LD S+IE+G+ EL  +  ++  ++ +   +    AQ+K  
Sbjct: 397 KYAENIDVASRNLSSLINDVLDFSKIESGKIELISTDFNIGSLLNDGYNLFLALAQQKMQ 456

Query: 349 EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
               + DP+  SV   DE  ++Q++ NL+SNAVK+T   G ++VTV             I
Sbjct: 457 SFALECDPNTPSVLSGDEVRLKQILTNLISNAVKYTPDRGAINVTVTSKELENETIMLII 516

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ DNG GI   +IP +  +F +  +    + QG GLGL I ++++    G   + S   
Sbjct: 517 NVTDNGIGIRTEDIPNLFQNFQRFELTKNRSIQGSGLGLAITKNLVDLMHGTINVDSTYG 576

Query: 464 EGVEVIAILPNTRVLNFIP 482
           +G      LP  +V++  P
Sbjct: 577 KGSSFTVNLPF-KVMDHAP 594


>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1295

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               ++  ++A       ++ AE  N AKS FLA+MSHE+RTPLN ++G ++++    +G 
Sbjct: 767  LADVSSAKMASEQLRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLL----LGS 822

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +   + ++  + +S   LL ++N+ILD S+IEAG+      + +L  +V E +  L L
Sbjct: 823  TLSHRQRAHLQIVKQSSDALLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALAL 882

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
            RA +K IE+   I   +   V  D   +RQV++NL+ NA+KFT+  G V V +  ++G  
Sbjct: 883  RASDKGIELIGDIAADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQ-GEVIVRLECSAGNA 941

Query: 400  ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
               G + +I D+G GI E ++ T+  +F Q   +I     G GLGL I+  +    GG  
Sbjct: 942  DEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHI 1001

Query: 457  LIRSKLREGVEVIAIL 472
             + S L +G      L
Sbjct: 1002 RVDSTLGQGSTFHFTL 1017


>gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
          Length = 928

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 139/251 (55%), Gaps = 9/251 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E    +   ++  + A+  N AK+ FL+SMSH++RTP+NAI+G + + +     P   E
Sbjct: 395 TEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMAVIAQANLQSP---E 451

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I+ S +HLLNLINE+LD+SRIE+G+ +L    +SL +++ + + + +  A E
Sbjct: 452 KIQDCLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAAE 511

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GR 399
           K++E+    D      V  D+  ++QV++NLLSNA+K+T  GG V + V           
Sbjct: 512 KHLELQINADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKGKG 571

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + DNG G++   IP +   F +   +  +  QG GLG+ I Q+I++   G   ++
Sbjct: 572 QYEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIEVK 631

Query: 460 SKLREGVEVIA 470
           S L EG + I 
Sbjct: 632 SVLGEGSQFIV 642


>gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3]
          Length = 1044

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 13/284 (4%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             +     +    L K+ +  +    EK   I   +       +  + AE  + AK+ FL
Sbjct: 484 IASFIPLEWDGTKLVKALLASMDVSQEKKAEIESHK----ALKDAYRAAENASRAKTEFL 539

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           ++MSH++RTP+NAI+G + +         + +   E +G I +S +HLL LINE+LD++R
Sbjct: 540 SNMSHDIRTPMNAIIGLTAIAGANI---ESQDRVVECLGKITKSSRHLLGLINEVLDMAR 596

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372
           IE+GR  L+E   SL ++V   + + +    E   ++   ++     +V  D   ++QV 
Sbjct: 597 IESGRMSLAEEDFSLPELVDNLLTLTKPAIDEHKHQLEVHVEHIEHEAVCGDSLRIQQVF 656

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +NL+SNAVK+T  GG + +T+               SI+DNG G+       +   F + 
Sbjct: 657 VNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRA 716

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                +  QG GLG+ IA++I+    G   + S   +G ++   
Sbjct: 717 DDHRTTKVQGTGLGMAIARNIVNLMNGNIQVESAPNKGTKITVT 760


>gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
 gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
          Length = 1184

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 143/298 (47%), Gaps = 6/298 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L +    +   +   D    EL  A+   ++  +  +  +  KS
Sbjct: 455 AHLETQQAELEQTNEQLAEQTQTLAEQRDAMDRKNVELNQAQLELEDRAEELQRSSKYKS 514

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L+ E  K +   I+ +G  LLNLIN+ILD
Sbjct: 515 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 573

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     M +  A ++ +     +       ++ D + + 
Sbjct: 574 ISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAADRKLGFQVDVQEGSPTMLFTDRQRLE 633

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V ++V    G G   +++D+G GIA  +  ++  +F Q   
Sbjct: 634 QILKNLLSNAIKFTEQ-GDVSLSVSRAPGEGIAFTVRDSGIGIAPDQQESIFEAFRQADG 692

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPED 484
                  G GLGL I++ + A  GG   + S+  +G     +LP     R  +  P +
Sbjct: 693 TTNRRYGGTGLGLSISRDLAALLGGYISVASEPGKGSIFTLVLPEQYVEREADAAPVE 750


>gi|77359030|ref|YP_338605.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873941|emb|CAI85162.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 905

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 10/268 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++  L  ++        + +K+++  N AKS+FLA+MSHE+RTPLNA++GFS +   E  
Sbjct: 508 QQIALTRQVAERTYSLAQAKKQSDLANRAKSQFLANMSHEIRTPLNAVIGFSSLARKE-- 565

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              +  T  +Y+  I+ S + LLNLIN+ILD+S+IE+ R  L      L  +++    M 
Sbjct: 566 --DDANTLIDYLDKINSSSKSLLNLINDILDISKIESKRLVLERIPFDLTALIQRINTMF 623

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-- 396
           +  A  K I      + P  +    D   + Q++LNL SNA+KFT   G V + V     
Sbjct: 624 EQSAASKAIVWKINSNIPKDTWFVGDPMRLEQIMLNLCSNAIKFTNA-GSVTLNVDTQLI 682

Query: 397 --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +     I++ D G GI   +   + ++F Q   +      G GLGL IA+ +      
Sbjct: 683 APNKAQLTIAVIDTGIGIKATQHEKLFSAFTQADNSTSRQFGGTGLGLAIAKELSVLMNA 742

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482
              + S+L +G      L    V    P
Sbjct: 743 NIALHSELDKGSTFTFTLEIETVKAQDP 770


>gi|84385826|ref|ZP_00988856.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379142|gb|EAP95995.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 808

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 12/289 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + +      A     + EL+       E   +AE+ N AKS FLA+MSHELRTP+N +LG
Sbjct: 249 ALLTFAFSFAIFIFRVFELKRNNLAYQEAADKAEKANEAKSLFLATMSHELRTPMNGVLG 308

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +++I+ ++         ++    I  SGQHL+ ++N+ILD S++E G+ EL  S  S+ 
Sbjct: 309 IAQIIKEDSQSADT----RQQAQIIIDSGQHLVTILNDILDFSKVEQGKMELEYSPFSVA 364

Query: 330 DIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG- 387
           D+V      L   A++K +        P+   +  D    RQ++ NL  NAVKFT  G  
Sbjct: 365 DVVTHLDKTLTPLAEDKGLAFTIKDHIPTHIQLIGDSARTRQILFNLAGNAVKFTESGKV 424

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   +         I + D G GIAE +I  + T+F Q  ++      G GLGL I + 
Sbjct: 425 EVEFLIAPPPPPSVNILVTDTGIGIAEDKIEHIFTAFEQAELSTTRKFGGTGLGLSIVKQ 484

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN------TRVLNFIPEDNHESTQ 490
           ++   GG   + S+L  G      LP        +V++  P   +++  
Sbjct: 485 LVELMGGTITVTSRLNFGTRFAISLPLEMHELEEQVIDQTPTKTNKTLD 533


>gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1658

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 12/299 (4%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             ++ +       +     K +       D I E ++A+    E ++ A+  N AKS FLA
Sbjct: 1137 GSIRWIVVRGQAIRDVQGKGIRMIGTNTD-ITERKLAEIALQEAKEAADAANRAKSTFLA 1195

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +MSHELR+PLNAILGF++++      P   + Y++ +  IH SG+HLL LIN++LDLS+I
Sbjct: 1196 NMSHELRSPLNAILGFAQLMSNSVTLP---QQYQDNLRIIHHSGEHLLTLINQVLDLSKI 1252

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
            EAGR  L+E+  +L  ++ E   M +L+  EK +++       +  ++  DE  +RQV++
Sbjct: 1253 EAGRITLNETTFNLHHLLGEVEDMFRLKVNEKGLQLRFNWAADVPATIQTDEIKLRQVLI 1312

Query: 374  NLLSNAVKFTAIGGRV-HVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NL+SNAVKFT+ G  V +V    T+  G+   Y  IKD G GIA  E+ ++  +F Q   
Sbjct: 1313 NLVSNAVKFTSAGSVVMNVAQQRTNDDGRMTLYFEIKDTGCGIAADELESIFEAFVQSQS 1372

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486
             ++S     GLGLPI +  +   GG+  + S++ +G      +     +V +  P+   
Sbjct: 1373 GVQSQSG-TGLGLPITRKFIQLMGGEIRVESQVSQGTTFTFDIQAKETQVTSSTPQTTS 1430


>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
          Length = 1252

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 8/243 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   + +++AE  N AKS FLA+MSHE+RTP+N +LG  +++   T+    ++   +YI
Sbjct: 504 EAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 559

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              + + + LL L+N+ILD S+IEAG+ EL     SL D++++  ++    A++K +E+ 
Sbjct: 560 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 619

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407
             +   +   +  D   ++QV++NL+ NA+KFT  G   + +              SIKD
Sbjct: 620 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 679

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   + + F Q   +I     G GLGL I++ ++   GG+  + S+   G  
Sbjct: 680 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 739

Query: 468 VIA 470
              
Sbjct: 740 FSF 742


>gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
          Length = 529

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 11/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            AE E  +   +  +  A+E N  KS FLA+MSHE+RTPLNAI+GFS ++    M   + 
Sbjct: 282 AAEKERHQKNIELAK--AQESNKLKSMFLANMSHEIRTPLNAIVGFSSILAD--MQEEDM 337

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    Y+  I+++   LL LIN+ILD S+IEAG +++        +I  E   +  L+  
Sbjct: 338 DERHFYVDIINKNSDLLLQLINDILDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKIP 397

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  +      D     + +D K + QVI N L+NA+KFT+  G + +          Y+S
Sbjct: 398 DH-VCFSFNRDLPSVELNSDPKRLTQVISNFLTNAIKFTSD-GEIKLDY-LLEKDKIYVS 454

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+E     +   F +      + +QG GLGL I++SI+   GG+  + S L +
Sbjct: 455 VTDTGIGISEEACNNIFDRFVKL----NTHKQGTGLGLSISKSIIEKLGGKIGVYSTLGK 510

Query: 465 GVEVIAILPN 474
           G      LP 
Sbjct: 511 GSTFWFTLPL 520


>gi|2218094|gb|AAB71131.1| sensor protein RssA [endosymbiont of Riftia pachyptila]
          Length = 773

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/516 (21%), Positives = 196/516 (37%), Gaps = 34/516 (6%)

Query: 4   SRKNKEKDVGLLISPTGDHLG---LEYPSKMDFDREIITLH-----VESLFRVSPI---- 51
           ++      +                E PSK  F   I          +            
Sbjct: 117 NQGRPRFWLERDSRDQQWKPTIKKPELPSKALFQASIRREFGFVGVSQIRLNQRTNDPRR 176

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
           L    L+           PI  +   I +   A        V N+   + E        L
Sbjct: 177 LMTLTLISPVFERAKPGGPIGAVAISIDVGGMAQAYRDTLWVTNNGAYLEERLKGDTRPL 236

Query: 112 VGQIAIGLC----WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML-------- 159
                 GL        L L +       ++ ++ +          ++    L        
Sbjct: 237 AFADFQGLEEIFRQGSLALWKGDKQQVIWVPLFMTEESGPLWVGRSVDPSPLAEFRTSLS 296

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDI--SLAGMLATALSFFTYITYHLFKSNVKILSC 217
              + +    +++ L +   ++  +     +LA  +   L     + +H  +   +I   
Sbjct: 297 LRVILIVLVALIIVLLSSRWIAQQIAHFSETLADGIGRVLKSDQPVAFHW-RGPREIEEL 355

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L            E  ++ EE N  KS FLA++SHELRTPLN+IL  S+++  E
Sbjct: 356 GEKLTALAETHAHHTQAQREHARQLEESNRYKSEFLANVSHELRTPLNSILLLSKMLREE 415

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G    E   + +  IH +G  L  LI+ ILDLSRIEAG+  L    I +  +V E + 
Sbjct: 416 --GDNLGEQQCKQLKVIHEAGSDLKALIDNILDLSRIEAGQAGLVLDQIDIRRMVEELLE 473

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++Q + + K + +  + DP L     +D++ +RQ++ N LSN++KFTA GG + + V   
Sbjct: 474 LVQPQFEAKGLYLKAEFDPQLPDGFLSDQEKVRQILKNFLSNSIKFTAEGGAI-LHVYRD 532

Query: 397 SGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     +++D+G GI + +   +  +F Q   +      G GLGL I++ +    G
Sbjct: 533 LDSACCPLCFALQDSGIGIPQEKHELIFEAFKQADGSTNRRFGGTGLGLSISRQLAQLLG 592

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G+  ++S+ ++G      LP     +   E   E  
Sbjct: 593 GEIRLQSQEQQGARFTLCLPLQPPADAAIEPPPEQP 628


>gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88]
          Length = 2345

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F          +N  ++  Q     L  E E    +++ E +      E+  
Sbjct: 1772 VGISLANAFLYRNASKHSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1831

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1832 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1887

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L + + E +  L+   +++ ++  + +D    +  V  D
Sbjct: 1888 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1947

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V             I+  + D G GI+  ++  + 
Sbjct: 1948 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 2007

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    VL+ 
Sbjct: 2008 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2063

Query: 481  IPED-------NHESTQYK 492
             P++       + +STQ K
Sbjct: 2064 APKNAVVKTPWSQDSTQEK 2082


>gi|160936694|ref|ZP_02084061.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440485|gb|EDP18230.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
          Length = 819

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + E   +  +LE          + AEE N AKS FL+ MSH++RTPLNA+LG  ++ E  
Sbjct: 266 ETELRQMQQKLEAQAKELRSALETAEEANRAKSDFLSRMSHDIRTPLNAVLGMKDIAEAH 325

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              P      K+ +  I  SGQHLL+LIN++LD+S+IE+G   L E ++SL +++   + 
Sbjct: 326 LDDP---AKVKDCLRKIGLSGQHLLSLINDVLDMSKIESGEMVLREDSMSLPEVLENVVA 382

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++Q +  EK      ++   +     +D   MRQ+ +N+LSNA KFT + G V + V   
Sbjct: 383 IMQPQFGEKEQHFSIRLRSVVHEQFLSDALRMRQIFINILSNAYKFTPVNGTVSMDVCEK 442

Query: 397 S--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      SI D G G+    +  + T+F +   +     +G GLG+ I +  +   
Sbjct: 443 QAVDGTALFRFSITDTGIGMKPEYLAQIFTAFSRERDSRVDKTEGTGLGMAITKRFVDMM 502

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
           GG   + S+L +G      LP  
Sbjct: 503 GGTIEVTSELGKGTCFRVELPLK 525


>gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium
           vinosum]
          Length = 742

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                ++ AE  + AKS+FLA+MSHE+RTP+NA++G S+++    +    +   ++Y+G 
Sbjct: 513 EIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPL----DAKQRDYLGK 568

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S + LL +IN+ILD S+IEAG+ +LS    SL D++ +   +    A  ++IE+   
Sbjct: 569 IRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFD 628

Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDN 408
           +   SL  V  D   +RQV++NLLSNAVKFT   G+V +++               ++D 
Sbjct: 629 LAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQ-GQVVLSIRQLDAGTASARLRFEVRDT 687

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           G GIA  +   +   F Q   +      G GLGL I+Q ++   GG  ++ S   
Sbjct: 688 GIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPG 742


>gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 388

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             ++   C       I  L+  ++     R++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 117 MEIEDRDCMVITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++         +E   +++  +  + + L  LI +ILDLS+IEAG  E   S + + 
Sbjct: 177 FSELLAS----ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDIN 232

Query: 330 DIVRECIIMLQLRAQE--KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            ++ +     ++R  E    ++I ++      ++  D   + QV+ N ++NA+KFT   G
Sbjct: 233 QMMSDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQE-G 291

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +          Y  +KD G GI + ++P V   F +     K  + G GLGL I Q+
Sbjct: 292 SITLGFRPYEEG-LYFYVKDTGTGIPQEKLPHVFERFVKL----KQEKNGTGLGLSICQT 346

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+   GG+  + S+   G      LP
Sbjct: 347 IVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 1151

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 13/351 (3%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            L            +    TL    ++  L  F     +  S      A     +    +
Sbjct: 575 ALWSYLQSGLSNYLLLMGVTLTFLGALLGLIYFHETLILEKS----AAAALLGPLRLAFL 630

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243
              +     +  ++++  +T    +   +  + Q       I       +   + R+ AE
Sbjct: 631 KVFAALVFASAVIAWWLVLTSESRRVAQEESNRQTGLLLREIELHRQTDAELQQARQVAE 690

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N AKSR++  +SHELRTPLN+ILG++++++ +   P      +  I  I RSG+HLL+
Sbjct: 691 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDVSIP---AARQPAIRVIRRSGEHLLS 747

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           LI   LD++RIE+G+       + L + +++ + M +L+A+ K +    ++   L   V 
Sbjct: 748 LIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVR 807

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           AD+K + Q+++N+L NAVKFT  GG V  +           I I+D GPGI + E+  + 
Sbjct: 808 ADQKRLSQILINILGNAVKFTRQGGVVFRLRYARE---LAVIEIEDTGPGILKEELDEIF 864

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +GS A  S   G GLGL I++ +    GG+  +RS +  G      L
Sbjct: 865 EPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELSVRSVVGSGTVFQIRL 915


>gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 508

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 148/324 (45%), Gaps = 8/324 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            ++   +       V  S F + +     AI    +L    +      L         + 
Sbjct: 184 AAVYLHTPVPAIQKVRTSVFSLFLISGGVAISLAIILVYIFSIRFTRPLKQINNAAKIIA 243

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
             + +     + +D++    E   ++ ++  +R EE       F+A++SHELRTP+ +I 
Sbjct: 244 GGDFQKRLVVSSQDEIGQLAESFNNMVED-LQRLEELRRG---FIANVSHELRTPMTSIR 299

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GF E I     G +  E  + Y+  +      L  L+N++LDL+R+E+G   LS     +
Sbjct: 300 GFIEGILD---GTIPPEKQRGYLTIVRDETNRLNRLVNDLLDLARMESGELTLSMKPFDI 356

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +++R C+I L+     KN++I    D     V AD+  + +VI+NLL NAVKF+   G+
Sbjct: 357 NELIRICVIKLETLITSKNLQIEANFDVDSMMVLADKDSIERVIINLLHNAVKFSNENGK 416

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + V       +  +IS+KDNG GI   +   +   F +   +    + G GLGL I ++I
Sbjct: 417 IIVETAKNKEK-VFISVKDNGIGIDSDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNI 475

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
           +  H    L+ S + +G +    L
Sbjct: 476 LTEHKQDILLESDVGKGTKFTFTL 499


>gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1499

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 15/279 (5%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IELETMG 280
            I+ L  A+      ++ AE  N  KS+F+A++SHE+RTPL+ ILG  +V    +    + 
Sbjct: 1034 ISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVALSRLNDTALP 1093

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              +NE    Y+  I    + LL++IN++LD SR+EAGR  L +    L   V + +  L 
Sbjct: 1094 AHDNE-QGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALAPLA 1152

Query: 341  LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTS- 397
            ++A+ K + +   ID  +   +  D   +RQ+++NL  NAVKFT    G VHV V  ++ 
Sbjct: 1153 VQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRRSAQ 1212

Query: 398  ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                G     +++D GPGI   ++P +  SF Q   +      G GLGL I++ I+   G
Sbjct: 1213 CPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAISRHIVRLQG 1272

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            G   + S   +G      LP  +     P+     T  +
Sbjct: 1273 GDIGVNSTPGQGSRFWFTLPIDK---DAPQGAATPTDLR 1308


>gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 1232

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 7/252 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E +  +      ++RAE+ ++AK  FLA+MSHE+RTP+NAI+GF+E++    + P+  
Sbjct: 654 LSERKAMEQDLVAAKERAEQASIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPV-- 711

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +++  + +S + LL L+N+ILD +++E G  EL     SL  + ++ +  LQ++A 
Sbjct: 712 --QLKHMQTVRQSARSLLGLLNDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQAD 769

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +      +    V  DE  +RQV++NLL NA+KFT   G V ++V         +
Sbjct: 770 KKGLGLHLDYVHTTPDQVLGDELRIRQVLVNLLGNAIKFTLT-GEVRLSVDVLGEG-VRM 827

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GIA   I  + T F Q   ++     G GLG  IA+ +    GG+  + S   
Sbjct: 828 QVQDTGIGIAVERIEHIFTPFTQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEG 887

Query: 464 EGVEVIAILPNT 475
           +G   +  LP  
Sbjct: 888 QGSCFVVWLPLE 899


>gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 982

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 9/283 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
            +  L     I + +       L     +  L   ++   +     ++ AE  ++AKS F
Sbjct: 553 ASGKLIGVLGIGHDITAKRRSELELDGHRQHLQELVDSQTADLMVAKEVAETASVAKSAF 612

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+NAI G   ++    + P  +E     +  I  + +HLL +IN++LDLS
Sbjct: 613 LANMSHEIRTPMNAITGMVHILRNMGVTPPQSEK----LDIIENASKHLLGIINDVLDLS 668

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +IEAG++ L +  +S+  +      ML  + +EK + +  + D    ++  D   ++Q +
Sbjct: 669 KIEAGKFTLEDVPLSIRALFGNVASMLGPKVREKGLVLNIEADDVPRNLRGDPTRLQQAL 728

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGS 428
           LN   NA+KFT   G + +               I ++D G GIA   +P +  +F Q  
Sbjct: 729 LNFAGNALKFTER-GHITLRARILEETELSANLCIEVEDTGVGIAPEALPKLFGAFEQAD 787

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            ++     G GLGL I + I    GG   + S    G      
Sbjct: 788 NSMTRKYGGTGLGLAITKKIAEVMGGTAGVNSTPGGGSTFWFT 830


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1170

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +        L +    +   + + D+    L  A+ + ++     +  +  KS FLA+M
Sbjct: 440 QAELEQTNEQLAEQTEALARQRDQMDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANM 499

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+ L  ++++     G L+ E  + +   I+ +G  LL LIN+ILD+S++EA
Sbjct: 500 SHELRTPLNSSLILAKLLADNPAGNLSEEQVQ-FARSIYSAGNDLLTLINDILDISKVEA 558

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+ E+      L  +V     +   +A EK +    ++   L  +++ D + + Q++ NL
Sbjct: 559 GKLEVHPELTILARLVDGMKSLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNL 618

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           L+NA KFT   G V + V    G     +++D G GIA  +   +  +F Q         
Sbjct: 619 LANAFKFTEK-GSVTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRY 677

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            G GLGL I++ +    GGQ  ++S    G     +LP +       E        + 
Sbjct: 678 GGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLPQSYSEPLAVEPTTAPQPSRA 735


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 17/333 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P + AL   +++   V       +          +     +  V+  +       L  
Sbjct: 631 VQPYLGALGIASLL--DVPIFFGGRLAGVVCHERVGLPREWTREEVQFATSVGNLVALAY 688

Query: 227 ELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           E +    A++     ++ AE  N AKS FLA+MSHE+RTP+NAI+G ++++    +    
Sbjct: 689 EAKQRLEAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSETPL---- 744

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           NE  +EY+     +G +LL+LIN++LDLS+IEAG  +L      L D+V+    ++ +RA
Sbjct: 745 NEDQREYVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRA 804

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            EKN+E+  +I P + + +  D   +RQV+LNLL NA+KFT   G V + V         
Sbjct: 805 SEKNLELAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDE-GEVVLRVERDPQADGP 863

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI   ++  +   F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 864 GTILFTVRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWV 923

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            S+L  G            ++  P       Q+
Sbjct: 924 DSELGRGSTFSFT--AKFAVHVQPASAVPPAQW 954


>gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 1026

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 184/488 (37%), Gaps = 33/488 (6%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV--ANIGTWFTQN 69
           V   +             +    R +    V S         +   +   A +     + 
Sbjct: 302 VARALEHAR-----HDDGERAAARRVGINFVVSDRVPRSDEVVMATISWRAVLSDVALRA 356

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW--TLLTLV 127
               +     L   A       K     ++        I L+  +             LV
Sbjct: 357 S---LTVAPALFAIALLWIAIVKFDRRALRPANRRA--IRLIESEALNRTLIRTAPAGLV 411

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                  E +    +       +        L  A      P                 +
Sbjct: 412 LLSFADGETIMRNDALLAYEQDASGEPLGKRLWRAYRDGAPPGNA-----------RTRV 460

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
           +    +  A     Y+  H+ ++  + +         I   + A+    E R+ AE  N 
Sbjct: 461 TRELAVERAGYGTAYLDAHIVRTRYRGIDVLLCTLLDITTRKQAEEKLREAREAAEFANK 520

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKS FLA+MSHE+RTPLNAI+G  E++E   M        +  +G I  S   LL +IN+
Sbjct: 521 AKSTFLATMSHEIRTPLNAIIGNLELMERAQMAAP----LRRRLGTIMSSSDALLRVIND 576

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           +LDLS+ E+ +  L      L  +V E   + +  A  K++ +  +I P L++    D  
Sbjct: 577 VLDLSKAESNQMALESIPFDLRRVVNEVAAIFRPLADAKSLVLTCRIAPDLANGYVGDAT 636

Query: 367 GMRQVILNLLSNAVKFTAIGG-RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTS 423
            +RQ++ NL+SNA+KFT  GG  + V +     +GR   I++ D G GI E  +PT+   
Sbjct: 637 RLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRCVEIAVSDTGIGIPEDGLPTLFDV 696

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           + Q   +I     G GLGLP+ + I+   GG   + S+L EG   +A LP     +   +
Sbjct: 697 YVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALPLPEAPSGWRD 756

Query: 484 DNHESTQY 491
           D  E   +
Sbjct: 757 DAPEPGTF 764


>gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 441

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 149/328 (45%), Gaps = 8/328 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +++     +++L  A++     ++V      ++   +     A     A          +
Sbjct: 115 SVANMVGESYILQTALWGLGLVILVTAGVGLLLFRRLTQRLRAMQDVVADFEAGAFGRRV 174

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             ++        E   L            ET +   + +  +   +A++SH+LR+P+ +I
Sbjct: 175 DVTSND------EIGRLGTCFNRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASI 228

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E + ++  G L  +  + Y+    R+ + L  L+NE+ +LS++E  + E +  A  
Sbjct: 229 QGYLETVHMKD-GDLPPQERQRYVKTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFP 287

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           + ++V++ ++  + RA+E+ +++   +    + V AD   + + + NL+ NA+ +T  GG
Sbjct: 288 IAELVQDVVMQYEPRAEEQAVDLRADLPERHARVEADIGLVERALSNLIDNAIHYTPEGG 347

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V V +         +++ D GPGI E ++P +   F +   +      G GLGL IA++
Sbjct: 348 QVRVRLD-NEQGEVCVAVADTGPGIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKT 406

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475
           I+  HG    + S + EG      LP  
Sbjct: 407 ILELHGRTLEVESTVGEGTSFRFCLPVE 434


>gi|302551344|ref|ZP_07303686.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302468962|gb|EFL32055.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1359

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 17/325 (5%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            A     V  I +A     A S    +     +   ++     E      EL+ + +  +E
Sbjct: 867  AFFDQFVNTIGVAINTIIANSRTESLLGESQRLARQLQERSDELQMQQGELQRSNAELEE 926

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN++L  + ++     G L+++  + +   IHRS
Sbjct: 927  KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 985

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LL LIN+ILDLS+IEAGR ++    + LI ++       +    ++ +     +   
Sbjct: 986  GSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAFEVAVGED 1045

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIK 406
            +   +++DE+ ++Q++ NLLSNA+KFTA  G+V + V             +      S+ 
Sbjct: 1046 VPREMYSDEQRLQQILRNLLSNAIKFTAT-GKVELRVDRVRDTEHRFVRDADDVIAFSVS 1104

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GIA  ++P +  +F Q          G GLGL I++ I    GG+ +  S+  +G 
Sbjct: 1105 DTGIGIAPEKLPVIFEAFAQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAESEPGKGS 1164

Query: 467  EVIAILPN----TRVLNFIPEDNHE 487
                 +P       V    P D  E
Sbjct: 1165 TFTLHVPVVSPGHTVPQPRPADRSE 1189


>gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 862

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 139/276 (50%), Gaps = 14/276 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              + ++      +  AE  N  K+ FLA+MSHE+RTP+NAILGF+E++E E      + 
Sbjct: 353 EMRKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAE----ERDP 408

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++YI  I+ SG  LL +IN++LDLS++EA +  L      +  ++ E   +    A++
Sbjct: 409 RRRKYIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEK 468

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR---- 399
           K++ +  +I  +    +  D   +RQ+++NL+ NA+KFT +GG R+ +     S      
Sbjct: 469 KHLILDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSV 528

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D+GPGIA  +   +   F QG +A      G GLGL I++ +    GG   + 
Sbjct: 529 DLRIDVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLT 588

Query: 460 SKLREGVEVIAILP----NTRVLNFIPEDNHESTQY 491
           S   EG      LP      +       ++ E+ Q+
Sbjct: 589 SSPGEGAIFSIELPNVAIVEKASLEKENEDTENVQF 624


>gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 807

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 674 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 788 GSCFWFTYP 796


>gi|285018938|ref|YP_003376649.1| two component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474156|emb|CBA16657.1| putative two component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1188

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 145/319 (45%), Gaps = 23/319 (7%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VVA+    +         L G    AL     ++Y   +   +  S Q      +A  + 
Sbjct: 747  VVAMRFHVLPPWWRSTWGLVGWALLALLIVWRLSYLYRRRLRRRNSWQ------LALHKQ 800

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                     + AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +   + Y
Sbjct: 801  ---------EVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLATPL----DPKQRGY 847

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
               I  +G HLL L+N+ LDL+RIEAGR EL +    L  ++ E   M++  AQ   +  
Sbjct: 848  TESIRGAGTHLLRLVNDALDLARIEAGRLELDQQPFDLGQLIAELAAMMEPMAQGHGLTF 907

Query: 351  FQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDN 408
                  P   +   D   +RQ++LNLL+NA+KFT   G V + V      +G    + D 
Sbjct: 908  VLDNAMPEQVTATGDATRVRQILLNLLNNAIKFTER-GSVQLRVAPLQEFQGVRFEVVDT 966

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            GPGI   +   +   F Q       +   G GLGL I Q +    GG+  ++S+L  G  
Sbjct: 967  GPGINAEQQARLFQRFEQADGPRTAARYGGSGLGLAICQELAVAMGGRIDLQSRLGAGTR 1026

Query: 468  VIAILPNTRVLNFIPEDNH 486
             +  LP   V + +P    
Sbjct: 1027 FVVDLPLPWVPSSLPRPTS 1045


>gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 809

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 560 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 615

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 616 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 675

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 676 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 733

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 734 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 789

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 790 GSCFWFTYP 798


>gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
 gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
          Length = 569

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + ++++   A++              ++    AEE +  KS FLAS +HELRTPLN I+G
Sbjct: 283 AEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIG 342

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F ++I        + +  +E++ + H+S  HLLNLIN+ILD+++IEAG+ +L   ++ L 
Sbjct: 343 FLKLILDGM--ADDAQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLELGSVELA 400

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           ++ +        +AQ K++    K+  +L    V+ + + + QV+ NL+SNA+KFT   G
Sbjct: 401 ELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIMVYGNYQRLLQVMFNLVSNAIKFTHE-G 459

Query: 388 RVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            + V                     +S+ D G G++  +   +   F Q   +   A  G
Sbjct: 460 SIVVNAEIVKKKIKYQDQEFPGLVKVSVTDTGIGVSLDQQAKLFEKFVQVDGSHTKAYGG 519

Query: 438 VGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476
            GLGL I+Q ++   GGQ    S     G  V   +P  +
Sbjct: 520 TGLGLAISQKLVQAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559


>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1117

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 9/247 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             ++   + ++ AE+  +AKS FLASMSHE+RTP+N +LG   +++   +    ++  K 
Sbjct: 586 ETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIVKATQL----DQQQKH 641

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +I     S + LL +IN+ILD S+IEAG+ ++     +L  ++ E +    L+A++ N  
Sbjct: 642 HIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEVVESFALKAEQNNTT 701

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
           +       + S   +D   +RQ++ NL+ NAVKFT   G + VT   T          +I
Sbjct: 702 LILDATHITSSEFISDPNRLRQILSNLIGNAVKFT-QNGEILVTAKITHTLDATVLECAI 760

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI+  + P +  SF Q   +      G GLGL I + +     G+  + S   +G
Sbjct: 761 ADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNVSSTPNKG 820

Query: 466 VEVIAIL 472
                 +
Sbjct: 821 STFSFFI 827


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 127/266 (47%), Gaps = 9/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E E      +  ++ AE  N AK+ F+A+MSHE+RTPLN +LG + ++    +    +
Sbjct: 463 VTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDTPL----D 518

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y+G I R G  LL+++++ILD S++EAGR +L        ++ R    +L+ +A 
Sbjct: 519 DRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILEPKAA 578

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400
           EK + I    D         D   +RQV+ NL+ NA+KFT   G + +         G  
Sbjct: 579 EKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDE-GWISIEATVVKGPDGPR 637

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G GI E     +   F Q   ++     G GLGL I + I+   GG+  + S
Sbjct: 638 LRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGVVS 697

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486
           +  +G      +P+    +   E   
Sbjct: 698 ETGKGSTFWFEIPHVEPSSSDQEAAQ 723


>gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
 gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
          Length = 1824

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 145/272 (53%), Gaps = 18/272 (6%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
              L       D+ +  ++ + + +  ++ AEE N AKS F+A++SHE+RTPL+ ++G S+
Sbjct: 1106 SSLRMAGTLRDMTSRKDMQRLIFE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSD 1163

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++    +    +E  ++Y+  I +S Q LL +IN+ILD S++E+ + ++     S+I+  
Sbjct: 1164 LLLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETC 1219

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH- 390
            +  I ML + A    ++I  ++ P++   V+ D   +RQV+LNLLSNA+KFT+ G  +  
Sbjct: 1220 QAVIHMLSV-AANDEVDILLRVPPNVPKIVFGDAMRIRQVLLNLLSNAIKFTSRGHILTD 1278

Query: 391  VTVGW------TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            ++V        +     +  I+I+D G GI +    ++   F Q   +      G GLGL
Sbjct: 1279 ISVDESVPTSNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGL 1338

Query: 443  PIAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473
             I + ++    GG   + S + +G     I+P
Sbjct: 1339 SITKRLIEEVMGGTIQVSSIVNQGSTFKCIIP 1370


>gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
 gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
          Length = 883

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 13/282 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +    +  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIG-----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           T  G             +   +   S     IS+KD G GIA+ +   +  +F Q   A 
Sbjct: 617 TEKGFVSLHFDSIETANLSHEMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGAT 676

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                G GLGL I +      GG   + S + EG      +P
Sbjct: 677 IRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+A++SHELRTPL +I+G+ + +    +   + +T + ++  I      L NLIN++
Sbjct: 371 RNDFVANVSHELRTPLTSIIGYLDTLLESDI--EDQDTRERFLQIIKEETDRLSNLINDL 428

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LS+IE+  ++L         IV++ + +L  +A+++ +E+  +ID +L  V+   + +
Sbjct: 429 LNLSKIESQIFKLEADNFE--KIVKKVVNLLSQKAKKQKLELNLEIDNNLPLVYMVREQI 486

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV++NL+ NA+K+TA GG+V V V     +  Y S++DNG GI + +   +   F +  
Sbjct: 487 KQVLINLIDNAIKYTAEGGKVEVKVKQEKDK-IYFSVQDNGMGIPQADQERIFERFYRVD 545

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A   A  G G+GL I ++I+  HG +  ++S+   G E    L
Sbjct: 546 KARSRALGGTGIGLSIVRNIIKQHGSEIQLKSREGVGSEFYFYL 589


>gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 9/309 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++ + + +     +S   + +  L+        L+++ ++      +  +   +L     
Sbjct: 92  IAVELMKAGATDYLSKFRVSSETLAQVLRNAIRLYRAEMQTTIAYQQLRESHEQLVRKNQ 151

Query: 234 LSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +           +  E +  KS+FLA+MSHELRTP+NAI+GF++++     G L    
Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTG-Q 210

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  +G+HLL L+NE+LD S++E GR EL      L  ++   ++ ++  A+ K
Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAK 270

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + +  +ID   S +  D   ++Q+++NLLSNA+KFT   G + + V    G    I +K
Sbjct: 271 KLSLLVQIDLQNSLLVNDPVRIKQILINLLSNAIKFTDS-GSIWIDVKDLPGSWVEIKVK 329

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA  +   +  +F Q   +I     G GLGL I  S++    G+  + S+L  G 
Sbjct: 330 DTGIGIAAKDFKYIFEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGS 389

Query: 467 EVIAILPNT 475
                LP  
Sbjct: 390 IFTITLPRQ 398


>gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 623

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 11/269 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    ++       D+       +    E +KRAEE N  KS FLA+MSHE+RTPLN
Sbjct: 364 RDYRPEEGVIDLACVNYDISELKRTEEEELREAKKRAEESNKLKSAFLANMSHEIRTPLN 423

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++  E+      ET +EY   I R+   LL +I+++LDL+RIE+GR ++  + 
Sbjct: 424 AIVGFSELLADESRH----ETRREYTDIILRNNTLLLQIISDVLDLARIESGRTDIERTQ 479

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
               D+ RE    L+L+ +   +E+  +       V    KG+ QV+ N   NA+KFT  
Sbjct: 480 FDARDLCREVADSLRLQ-RRPGVELRVEEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEK 538

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V +             ++D G GIA  +   +   F +      +  QG GLGL I 
Sbjct: 539 -GSVTIGFRRIP-GHIRFYVRDTGIGIAPEDRERIFERFVKLD----TFTQGTGLGLSIC 592

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +SI    GG   + S   EG      +P 
Sbjct: 593 KSIAEQLGGSVGVDSVAGEGSCFRIDIPA 621


>gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 974

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 12/279 (4%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               + + ++L   AE      E   A+   ++T + AE  + +KS FLA+MSHE+RTPL
Sbjct: 423 RRWTQLDEQLLMTAAEIIAAAIERNRAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPL 482

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G +E+   E +     E  +  +     S + LL+++N+ILDL+R+E+G+  L E 
Sbjct: 483 NAIIGLTELSLQEDLPEGVGENLRASL----SSAEALLDIVNDILDLARVESGKLHLEEV 538

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
             SL   +   + +++  A+ K ++    +   L   +  D   +RQ+++NL+ NA+KFT
Sbjct: 539 EFSLPRFLGGVMRVMRHEAERKGLDFSMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFT 598

Query: 384 AIGG-RVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
             GG  V V    +SG           +++D G GI E     +  +F Q   +I     
Sbjct: 599 EEGGVNVAVECVSSSGGYIAGVQRVRFTVQDTGIGIPEHLHGIIFENFRQADGSITRKYG 658

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL I++ ++   GG   +RS+  +G      LP  
Sbjct: 659 GTGLGLTISRQLVEMMGGSISLRSEAGKGSRFEVELPFK 697


>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 968

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 142/254 (55%), Gaps = 9/254 (3%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                    E  + AE  N AKS FL++MSH++RTP+NAI+GF+ +         + E  
Sbjct: 436 DRNMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKERV 492

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL DI+ +   ++  +   K 
Sbjct: 493 RDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDILHDLKTIISGQIHAKQ 552

Query: 348 IEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQ 401
           +E++   +D +   V+ D+  + QV+LNLLSNAVKFT  GG V V +    G        
Sbjct: 553 LELYMDAMDITNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQRPGTQKGSELY 612

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KDNG G+++  +  +   F +   +  S  QG GLG+ I ++I+   GG   ++++
Sbjct: 613 EIRVKDNGIGMSQEFVQKIFAPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTE 672

Query: 462 LREGVEVIAILPNT 475
             +G E I  LP  
Sbjct: 673 QGKGTEFIVRLPFR 686


>gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 763

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 10/316 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           I S    +  L  +L      +        K     +         I   ++A+      
Sbjct: 322 IRSGKASNFDLRILLPQQQIRYINAIAKPVKDENGAVIRLYGAIIDITRRKIAEQELINA 381

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +  AE+   AKS FL++MSHE+RTP+NA++GF+ ++          +   EY+  +  SG
Sbjct: 382 KVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQN----NPAQEQLEYLNLLKFSG 437

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           ++LL LIN+ILD S+I+ G+        +L +++ +        A++K +E+   +D S+
Sbjct: 438 ENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQAARDKGLELTLTVDQSI 497

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIA 413
             S+  D   + Q+++NL++N++KFT+  G V + V       ++I     I D G GIA
Sbjct: 498 INSIVGDPVRLGQILINLITNSIKFTSS-GSVSIDVWKEHEDLEHITICFEIADTGIGIA 556

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E  I  +   F Q S        G GLGL I + ++   GG   + SKL EG      L 
Sbjct: 557 EDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQGGSLSVTSKLNEGSTFQFRLT 616

Query: 474 NTRVLNFIPEDNHEST 489
                  +P+     T
Sbjct: 617 FQNGKQLLPDVPKTDT 632


>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 985

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 8/269 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L          + E  +   +LE +   + E  + A + N AKS+FLA+MSHE+RTP+N
Sbjct: 285 ALLNLIEDANLARNELLETNRKLEESVIRTQEMARAASKANEAKSQFLANMSHEVRTPMN 344

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G S+++   ++ P      ++Y+  I  SG++LL++IN+ILD S+IEA R +L    
Sbjct: 345 GVIGMSDLLLDTSLDP----EQRKYVETIISSGKNLLSIINDILDFSKIEANRLDLDVVD 400

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             L++++ +   +L L+AQ+K +E+       L   +  D+  +RQ+++NL+ NAVKFT 
Sbjct: 401 FDLLELLEDVCGILGLQAQQKGLELTLVTGSFLPRFLRGDQARIRQILVNLVGNAVKFTH 460

Query: 385 IGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G  V   +       Q    + ++D G GI    +  V   F Q   + +    G GLG
Sbjct: 461 SGEVVVCAMAQEERDSQVTIRLLVRDTGIGIPREMMKAVFEPFIQADGSTRRKYGGTGLG 520

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I+  +    G   ++ S   EG     
Sbjct: 521 LAISNQLAKKMGSTIILESTNGEGSVFWF 549


>gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 568

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 16/286 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + +   + ++++   A++              ++    AEE +  KS FLAS +HELRTP
Sbjct: 277 SRYWSPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTP 336

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I+GF ++I        + E  +E++ + H+S  HLLNLIN+ILD+++IEAG+ +L  
Sbjct: 337 LNGIIGFLKLILDGM--ADDAEEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEL 394

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381
            A+ L ++ +        +AQ K++E   K+  +L    V+ + + + QV+LNL+SNA+K
Sbjct: 395 GAVELAELFQAVDNFTLPQAQRKHLEFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIK 454

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT   G + V                     +S+ D G G++  +   +   F Q   + 
Sbjct: 455 FTHE-GSIVVNAEIVKKKIHHQNQEFPGHVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSH 513

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476
             A  G GLGL I+Q ++   GGQ    S     G  V   +P  +
Sbjct: 514 TKAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559


>gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 978

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 12/251 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E +  +      R++A+E +  KS FLA+MSHE+RTPLNAI+GFS ++        N
Sbjct: 592 LITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLL----TATEN 647

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               KE+I  I  + Q LL L+++ILDLS+IEA   E +   + L  + ++    ++ R 
Sbjct: 648 ETERKEFISIIETNNQLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL 707

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  + +    +  +  V  +   + QV++NLL NA KFT   G +        G   Y 
Sbjct: 708 -QTGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEK-GEIMFGYKIR-GEELYF 764

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            +KD G GI+      +   F +      +  QG GLGL I ++I+    G+  + S+  
Sbjct: 765 YVKDTGIGISLENQKKIFERFTKV----NTFIQGTGLGLSICKNIVTKMKGRIGVESEGE 820

Query: 463 REGVEVIAILP 473
            +G      +P
Sbjct: 821 GKGSTFWFTIP 831


>gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1168

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 26/311 (8%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                     + LA +     S+F ++     +                     A  L+  
Sbjct: 750  PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 791

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++ AE+ + AK+RFLA++ HE+RTP+  +LG SE++    + P      + Y   I  +
Sbjct: 792  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 847

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356
            G+HLL+L+N+ LDL+RIE+GR EL +   +L  ++++   ++   A +K +        P
Sbjct: 848  GEHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLP 907

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415
                   D   +RQ++LNLLSNAVKFT+  G + +        R  +  ++D GPGI++ 
Sbjct: 908  PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 966

Query: 416  EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q   A  +A   G GLGL I + +     G+  + S+L  G      LP 
Sbjct: 967  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026

Query: 475  TRVLNFIPEDN 485
              V++   E  
Sbjct: 1027 PMVVDASAEAE 1037


>gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 733

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +KD     +        +T   AE  NL KS FL +MSHEL TPL  I+G S  ++
Sbjct: 334 QVQEQKDIFECRVIERTQELQDTLMAAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQ 393

Query: 276 LETMGP--LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
             +     L  +  K Y+  I  +G  LL LIN++L+ S++ AG+  L     SL  +  
Sbjct: 394 KCSAASNFLPPDKQKHYLQVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCN 453

Query: 334 ECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             + +++  A+ K I +  ++         +AD   ++Q++L LL NA+KFT   G + +
Sbjct: 454 HVLEIIKTEAEIKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITL 513

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            + W  G      ++D G GI   +IP +   F Q   + K    G+GLGL + + ++  
Sbjct: 514 RL-WKEGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVEL 572

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           H G   + S L +G      LP  +     P+ +  +  +
Sbjct: 573 HRGTIEVESCLDKGSIFTVRLPQQKPPKSQPQLSEHNPHF 612


>gi|229520292|ref|ZP_04409718.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229342658|gb|EEO07650.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 736

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 13/324 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKIL 215
           L         P+  +  T      H   +++   L   L     +        ++++K L
Sbjct: 542 LMTRAAAGMGPL-ASELTHGRHGPHARHLAVPVRLDGRLGAVAVLLDKPTPFTRADIKQL 600

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                      E   +       ++ AE  N AKS FLA+MSHELRTPLN +LG  +++E
Sbjct: 601 DLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE 660

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    NE     +     SG+ LL ++++ILDLSRIEAGR EL     S  + VR+ 
Sbjct: 661 AGDLDRDQNE----LVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQV 716

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-- 393
             M    A+ + + +  + D     VW D   +RQ++ NLL NA+KFT   G V V V  
Sbjct: 717 YDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHE-GTVGVEVCA 775

Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                       S+ D G GI    + ++   F Q   +      G GLGL I + ++  
Sbjct: 776 VRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHL 835

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG   + S L EG  V   LP  
Sbjct: 836 MGGGLNVESALGEGTAVHVCLPFR 859


>gi|158334364|ref|YP_001515536.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304605|gb|ABW26222.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2817

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 16/302 (5%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-------ELEVAKSL 234
                  +  G+L         +   + +        +     L          +E     
Sbjct: 2230 RWQFSSAPLGVLPDGRRIVISMAVDVTQRRQTEDELEQANQQLAEYSHTLEQRVEERTQA 2289

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +++A+  N AKS FLA+MSHELRTPLN ILG+++++          +  ++ I  I
Sbjct: 2290 LQIAKEQADSANQAKSEFLANMSHELRTPLNGILGYAQILNR---STTLIDKERDGIKVI 2346

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            H+ G HLL+LI++ILDL++IEA + EL      L  ++   + + +++AQ+K I+     
Sbjct: 2347 HQCGSHLLSLIDDILDLAKIEARKLELVPVDTYLPAVLHSVVEICKIKAQQKGIDFVYAP 2406

Query: 355  DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGP 410
                  V  DEK +RQV++NLL NAVKFT   G V + V   S           + D G 
Sbjct: 2407 KDLPIGVRVDEKCLRQVLINLLGNAVKFT-DNGTVTLNVEVLSTSNQEASLLFQVMDTGI 2465

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GIAE ++  +  +F Q   A     +G GLGL I+Q I+   G    ++S++  G +   
Sbjct: 2466 GIAETDLSKLFDAFEQV-GARDRRAEGTGLGLAISQRIVQLMGHSIEVKSQVGIGSQFSF 2524

Query: 471  IL 472
             L
Sbjct: 2525 RL 2526


>gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 632

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 11/235 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + E   E++  I  + 
Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LI++ILDL++IE+G  +L  + +++ +++ E +   +++  + N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +++D   + QVI N L+NA+K+T+  G + +      G     S+ D G G+++    
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +G     + +QG GLGL I ++I+   GG+  + S+L +G       P
Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 436

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 2/249 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ ++A+    +++   E  +  KS F+ ++SHELRTPLN+I+GFS +++      L  
Sbjct: 184 ISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPLNSIIGFSHILKENNENNLTE 243

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y  ++  SG+HLL LIN++LD+S+IE+G          L  ++ E +  L   A 
Sbjct: 244 NQLK-YCSNVEISGKHLLALINDVLDISKIESGEARFEPELFKLNLLIHEVVESLAPFAN 302

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K+IE+   +      V AD   ++Q++LNLL+N++KFT   G++ +TVG        IS
Sbjct: 303 KKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPACGKIMLTVGVDEEN-INIS 361

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I DNG GIA+     +   F Q  + +    +G GLGL IA+  +  H GQ  ++S+L  
Sbjct: 362 ISDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAKKYVEMHKGQIWVKSELGV 421

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 422 GTTFNIKIP 430


>gi|89094752|ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
 gi|89081006|gb|EAR60243.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
          Length = 881

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 16/366 (4%)

Query: 119 LCWTLLTLVE-PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           + W ++ L E P       + I      LI L  +          +      +   +   
Sbjct: 148 IGWVVIVLSENPTKERQFEILIKGVILALIGLLTTVFIASRFGQRITNPILGLTHVIEML 207

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-----DDLIAELEVAK 232
               +       +     +L+          + + + L  + +K        +  LE   
Sbjct: 208 QHGHLETRASLSSTGELRSLAQGINRLAQRVQESNQTLESRVDKATKRLRSTLVHLEKQN 267

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D+ RKRA   NLAK  FLA MSHELRTPL ++ GF+ +++   +        KEY  
Sbjct: 268 QALDKARKRANSANLAKDEFLARMSHELRTPLTSVSGFARLLDQTELKT----DQKEYTR 323

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I+ +   LL++I++ILD S++E+   EL E      + + + + M    A +K +E+  
Sbjct: 324 IINLTSGLLLSIIDDILDYSKLESNAIELEEIPFDFENCILDVLEMQTAAAHDKGLELVP 383

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKD 407
            I+      +  D   +RQ++ NL+SN+VKFT+  G V + V  T          I ++D
Sbjct: 384 VIESETPKFLVGDPVRLRQILTNLISNSVKFTSQ-GHVCIHVVPTKISPVESKLKIIVED 442

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI +  I  +  +F Q   +I     G GLGL IA+ +     G+  + SK  +G +
Sbjct: 443 TGTGIPQDSIDNLFQAFSQADTSITRKYGGSGLGLVIAKRLTELMSGEISLESKEGKGTQ 502

Query: 468 VIAILP 473
           +   +P
Sbjct: 503 ITLNIP 508


>gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas sp. SN2]
          Length = 887

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 18/350 (5%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I+    +L+A+  +  + + +   +        +      +     +           + 
Sbjct: 288 IFSLVAILLAVIAAIFTAYRILGPIR------TITHVFNRLSEGQNISSIPGNSRNDEIG 341

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                 +     N +     +E   L   LE   S   E++ +AE    +KS FLA+MSH
Sbjct: 342 NLARAAHVFSDKNKQTEILLSEARGLNGRLESLNSELTESKIKAERATASKSIFLANMSH 401

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N I+G  E+ +   +     +    Y+     S Q L+++IN+ILD S+IEAG+
Sbjct: 402 EIRTPMNGIIGLIELAQQHPV----PDIVSGYLDKAAYSSQILMSVINDILDFSKIEAGK 457

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            ++ E + SL  +    I ++ L+A+EKN+ +   + PS+   V  D   + Q+I+N+ S
Sbjct: 458 LKIEEVSFSLHSLFDNLIAVIALKAKEKNLVVRFIVSPSIPPQVIGDPLRIAQIIMNIGS 517

Query: 378 NAVKFTAIGGRVHVTV-GWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NAVKFT   G++ +   G  + +G  +S    I+D+G G++E ++  +   F Q   A  
Sbjct: 518 NAVKFTEQ-GQICIRFDGSINDKGNLLSLTMNIEDSGIGMSERQLARIFNPFTQADDATN 576

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
               G GLGL I + +    GG     S   +G      LP  RV    P
Sbjct: 577 RKYGGTGLGLTIVKQLTDLMGGSLSATSVEGKGSTFTISLPL-RVFKNQP 625


>gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 709

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 9/274 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +L+      +E +++AEE   AK+RFLA+MSHE+RTPLNA++G S+    +     
Sbjct: 213 KLSRDLKERSIRLEEAKQQAEESARAKARFLANMSHEMRTPLNAVIGLSQ----KEYYQA 268

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +++  K++I  I+ SGQHLL LIN +LDLS+IE G+  L +    L D++  C  +    
Sbjct: 269 SDKQTKDFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCKNIFVEM 328

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGR- 399
           ++ +    F+        ++AD   + QV+ NL  NAVKFT   G V +   V     + 
Sbjct: 329 SKPEVDVFFRSDLEKDFKLFADRTKLLQVVNNLSYNAVKFT-SHGHVDICSDVTHVGDQC 387

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++I D G G+ + +I  V   F Q   +I     G GLGL I QS++    G   + 
Sbjct: 388 YLVMTITDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVE 447

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           S+L +G      +P   V+  +   +  + Q K 
Sbjct: 448 SELEKGTCFTVSMPVD-VVEKVELVSDRTRQQKV 480


>gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
 gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
          Length = 1230

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 6/256 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E +  AE+    KS FLA+MSHE+RTP+NAI+GF+E++    M P   
Sbjct: 638 ITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKP--- 694

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  I+ S + LL+L+N+ILD +++E G  EL     S+  +V   I  L L+A+
Sbjct: 695 -DQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQAR 753

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +++  +I   +S   +     +RQV++NL+ NA+KFT I G V + V   +    + 
Sbjct: 754 KKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDI-GSVKLKVYAQNQDVIHF 812

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA   +  +   F Q   ++     G GLG  I++ ++   GG     S+L 
Sbjct: 813 DVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLG 872

Query: 464 EGVEVIAILPNTRVLN 479
           +G      LP  +   
Sbjct: 873 KGSCFSINLPLKKGEE 888


>gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 652

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 11/251 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +     +   E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 272 HDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 327

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +     EY+  I ++   LL LIN+ILDLSRIE+G+ E++   + +  ++ E   + +L+
Sbjct: 328 DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLK 387

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             +  I +          +  D   + QV+ N LSNA+K T   G + + +    G    
Sbjct: 388 -MKTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHE-GAITLGLE-VCGEWLK 444

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIA+ ++P +   F +         QG GLGLPI QSI+   GG+  + S++
Sbjct: 445 VYVTDTGCGIAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLGGKISVESEV 500

Query: 463 REGVEVIAILP 473
             G   +  LP
Sbjct: 501 GVGSTFVMTLP 511


>gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 820

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 571 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 626

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 627 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 686

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 687 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 744

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 745 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 800

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 801 GSCFWFTYP 809


>gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1160

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 9/371 (2%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           ++  +  G+   ++ L       P  + +   A+  +A+++ +  +     A+       
Sbjct: 334 VLPAVHNGVVQAVIELGFFRPVQPIDMDMLSRASEQLAIAVRSAIDRTQLEALLDETQRQ 393

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
              L  Q    + V +  L             +     +        + +   L  + + 
Sbjct: 394 AEELQAQ-QEELRVSNEELEQQSRVLQESQAQMEAQQTELEQSNAQLEEQTQQLEYQKQQ 452

Query: 231 ----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                 +LSD+ R   E+ +  KS FLA+MSHELRTPLN+ L  ++++     G L +E 
Sbjct: 453 LLRAQDALSDKARD-LEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQ 511

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + Y   IH +G  LL LIN+ILDL++IEAG+  +    +++   V+  +  L+  A+EK
Sbjct: 512 VR-YAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREK 570

Query: 347 NIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           N+     ++P +  V   D + + Q++ NLLSNA+KFT   G V + V          S+
Sbjct: 571 NLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSV 629

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI + +   +  +F Q   +      G GLGL I++ +    GG   ++S   +G
Sbjct: 630 RDTGIGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQG 689

Query: 466 VEVIAILPNTR 476
                +LP   
Sbjct: 690 SVFTLVLPLQP 700


>gi|302916671|ref|XP_003052146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733085|gb|EEU46433.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1288

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 14/265 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 675 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 734

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 735 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 791 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 849

Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
               +             ++D G GIA+ ++  +  +F Q   ++     G GLGL I++
Sbjct: 850 ERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 909

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG   + S+  +G E    
Sbjct: 910 RLVNLMGGDLWVISEQGKGSEFHFT 934


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 147/328 (44%), Gaps = 27/328 (8%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + + T   +   ++ +  A     +   F           + +L+     + +  +L+ 
Sbjct: 368 FIGIITSRWIIRPIMKLKDAATAL-SQGEFNQQVNIERSDELGVLAKAF--NSMARQLQE 424

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           + +  +      ++ +  K  FLA+ SHELRTPLN I+G +E +     G L ++T    
Sbjct: 425 SFTSLETKNAELQQLDKLKDEFLANTSHELRTPLNGIIGIAESLIDGATGSLPDKTVSN- 483

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  SG+ L NL+N+ILD S++     EL    I + +I    + + Q    +K++++
Sbjct: 484 LALIVSSGRRLSNLVNDILDFSKLSHNNMELEIKPIGMREISEVVLTLSQPLIGKKSLQL 543

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------------- 397
              I P +  V ADE  M+Q++ N++ NA+KFT   G V V+                  
Sbjct: 544 INAISPEVPLVDADENRMQQILHNIIGNAIKFTEK-GIVEVSAEVVDSSSKLLQEGYIKI 602

Query: 398 ---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                     +   I++ D G GI E ++  +  +F QG  +      G GLGL + + +
Sbjct: 603 VESNDSSTQNQRLAITVADTGIGIPEDKLERIFEAFEQGDGSTAREYGGTGLGLAVTKQL 662

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  H G+  + SK+  G + I  LP ++
Sbjct: 663 VELHQGEIWVSSKVGVGSKFIFTLPISQ 690


>gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. BTAi1]
          Length = 774

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 2/269 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + + +   Q+  +    EL        + + RAEE N  KS+FLA+MSHELRTPLN
Sbjct: 495 RLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLN 554

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++     G L +E Y+EY  DI  SGQ+LL +IN+ILD+S+IEAGR +L    
Sbjct: 555 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEP 614

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L   + E + ++  RAQ+K + +   I+ ++  V AD +  +Q+++NLLSNAVKFT  
Sbjct: 615 LDLAKTLAESLRVVSGRAQDKRLVLDADIEGNIPIV-ADRRATKQIMVNLLSNAVKFTPE 673

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV +           + I D G GI    +  +   F Q    +     G GLGL IA
Sbjct: 674 GGRVTMR-SRVFDDKVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIA 732

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +S+   HGG   +RS++  G  V   LP 
Sbjct: 733 RSLTQLHGGSMRLRSRIESGTVVRVTLPR 761


>gi|4097445|gb|AAD09491.1| histidine kinase FIK [Nectria haematococca mpVI]
          Length = 1283

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 675 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 734

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V + 
Sbjct: 735 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFDA 790

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 791 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 849

Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
               +             ++D G GIA+ ++  +  +F Q   ++     G GLGL I++
Sbjct: 850 ERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 909

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG   + S+  +G E    
Sbjct: 910 RVVNLMGGDLWVISEQGKGSEFHFT 934


>gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 1240

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 1/271 (0%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L+      +S   +   LI E +  +S+  ET  + +E + AK+ F +++SHELRTP
Sbjct: 564 SRVLYNLLTHQISSAIKFTQLITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTP 623

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  ILG  E +          E   +    I  +   LL LIN +LD S+I+AG+  L+ 
Sbjct: 624 LTIILGQVEAVLSGQYYKNTLEPNSDIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNR 683

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +++   +   I  ++  A +KNI +    +   +  + D+     VI NL+SNA+KFT
Sbjct: 684 QPVNINRFLSSYISAVKSSASQKNINMIFVDNADDTFGFIDKDLFEAVIANLISNALKFT 743

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G + + +         I +KD+G GI + ++ T+   F Q   +  S  +G G+GL 
Sbjct: 744 DSEGYIIIELNKL-DTSFEIVVKDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLA 802

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             + I+  H G+  + S L +G      LP 
Sbjct: 803 YTKEIVELHEGKISVSSILGKGSVFAVSLPV 833


>gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 701

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 177/465 (38%), Gaps = 64/465 (13%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
           +  N         T                              ++V     G  W +L 
Sbjct: 239 WPWNVGVVGRVARTGKAALLTDIAHDSEWQLSTPDVRAE-----IVVPVRVEGEAWAVLV 293

Query: 126 LVE-PGTWTPEYLTIYKSATLLIAL-------SISALSNFMLPYAVFLSFFPVVVALSTQ 177
           L              +  A   +A        S S L    +     L+  P+ +AL+  
Sbjct: 294 LSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQLQQTLASLPLGLALTDG 353

Query: 178 --AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSL 234
              I+  +     L  +   A     Y+ + +    +K LS   E  D  AE        
Sbjct: 354 EGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELTDFFAECQAQPDET 413

Query: 235 SDETRK---------------------------------RAEEENLAKSRFLASMSHELR 261
            +   +                                 R  E +  K+ F++ +SHELR
Sbjct: 414 LELALRLSEPLQDLKLRSTPVKDAQHQITGRLVVIEDVTREREIDKMKNEFVSVVSHELR 473

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +ILG++E++      P+     +E++  ++     L  +++++L+LSR++AG+ +L
Sbjct: 474 TPLTSILGYTELLLAREFKPV---ERQEFVQTVYDQANQLSKMVDDLLNLSRLDAGQIKL 530

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +   +SL  I+RE    L     E    +   I   +  ++AD+  +RQ++ NLLSNA+K
Sbjct: 531 NRWVVSLHQIIREITKQLNETLSE-KHRLLIDIPEGIPPIFADKDKVRQILTNLLSNAIK 589

Query: 382 FTAIGGRVHVTVGWT-----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++  GG+V + V              + R   I+++D G GI+E ++P + T F +   +
Sbjct: 590 YSPNGGQVALIVRELRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPKLFTRFFRVDNS 649

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                 G GLGL I ++++  HGG+    S L  G      LP  
Sbjct: 650 TTRKIGGTGLGLSITKALIELHGGRIWATSTLGRGTTFWVTLPIA 694


>gi|189346221|ref|YP_001942750.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189340368|gb|ACD89771.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 691

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 125/277 (45%), Gaps = 25/277 (9%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + +K AE  + AKS FLA++SHE+RTPLN I+G SE++   ++  L     + Y  
Sbjct: 281 ENLKKAKKEAETASQAKSEFLANISHEIRTPLNGIIGMSEMLLDASLDRL---QQRHYCA 337

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  S + L  LI  ILD S++E+G+ +   S   +  I  +   +L   A +K +++  
Sbjct: 338 TIFVSAKKLNQLITNILDFSKVESGQLDKETSVFDIGTICHDVFCLLNENAIKKGLQLTI 397

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407
                +   +      +RQV++NLL NA+KFT   G V + +   S         IS++D
Sbjct: 398 DTSNEIPESIIGYPVYLRQVLINLLQNAIKFTYR-GEVALNIEPVSDTPGKLILRISVRD 456

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E +   +   F Q        E G GLGL I   ++   GG   + S   +G E
Sbjct: 457 TGIGIPEAQKKLIFQRFTQLDATATRKEGGAGLGLAITSKLVEYMGGTLNLDSTENKGSE 516

Query: 468 VIAIL--------PNTRV--------LNFIPEDNHES 488
               L        P T V        +   PE N E+
Sbjct: 517 FWFTLQFDKLHEKPTTPVIAEVRPAGIPKQPETNQEA 553


>gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 771

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  ++     R++AEE +  K  FLA+MSHE+RTPLNAI+GFS+++  +   PL  
Sbjct: 519 IQRIKDTENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E+I  I ++   LL LIN+ILDLSRIE+G    S   + L  ++ +     QL   
Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           E  +E+  ++      + +D   + QV  N ++NAVKFTA  G + +    ++      I
Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + +   V   F +         QG GLGL I QSI+    G   + S++ 
Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750

Query: 464 EGVEVIAILP 473
            G +    LP
Sbjct: 751 VGSKFTISLP 760


>gi|294653541|ref|NP_714785.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293630747|gb|AAN51800.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 841

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 159/421 (37%), Gaps = 31/421 (7%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L++        K +   ++    +             + L   + T      +    
Sbjct: 277 FTVLSIGIFMCMFIKSLFPEEVSSFFINSAIGVFGCSSFTLALPVRVFTEFFSIIFVLIS 336

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
                  T L            L    +L F  VV+      +  +    IS  G+    
Sbjct: 337 FLPLGLTTYLFKAHKMKRKGATLILIAYLIFSTVVLNDILFTLGYISTGYISYIGITVFI 396

Query: 197 LSFFTYITYHLFKSNVKILSCQAE-----------KDDLIAELEVAKSLSD--------- 236
                 +   L ++         E            ++L+A  E+  +  +         
Sbjct: 397 FFQAGVLAQQLTQAFNHSEDLALELKSTLQENIETHNELLALKELQNTNLEFQVQSRTRE 456

Query: 237 --ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R  AE  N  KS+FLASMSHE+RTPLN I+G  E  +   +    +E+ +     I
Sbjct: 457 LLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKSTPL----DESQQHIRNLI 512

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +SG++LL +IN+ILD S++E  +  L        + V E I +   +A +K + +    
Sbjct: 513 QKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDY 572

Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGP 410
            P  +     D++ + QV+ NL+SNAVKFT   G++ +         +    I + D+G 
Sbjct: 573 SPDFIDKSVGDKRRITQVLSNLISNAVKFTDS-GKIQIRAFSEKIETKIEYKIQVIDSGI 631

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   +I  +   F Q   +I     G GLGL I++ ++    G+  +     +G     
Sbjct: 632 GIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEF 691

Query: 471 I 471
            
Sbjct: 692 T 692


>gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
 gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
          Length = 570

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 379 ---DEAELRYVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
 gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1072

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
             ++      +     +L      +        S+      +I  L N  LP A+     
Sbjct: 165 RTIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +AL  Q  +     ++         +        + L  +    L  +      +  
Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +   ++ + +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P      
Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+  IH S   LL +IN+ILD S+IEAG+  +  +   L D+     ++   +A EK 
Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
           +E+   +       +  D   + Q+I+NL++N+VKFT   G + V+V             
Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D G G+ + ++ ++ T+F Q   +      G GLGL I + ++   GGQ  + S+ 
Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513

Query: 463 REGVEVIA 470
            +G   I 
Sbjct: 514 GKGSHFIF 521


>gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 844

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 115/488 (23%), Positives = 192/488 (39%), Gaps = 42/488 (8%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            +P   L          +F  +  FP++ +    +     S           +    +  
Sbjct: 105 FAPAGLLGAGTQTTAWIYFLWHGGFPLFVIGYTQLQNVKDSPAHPRDRLFGHVVPYVIAA 164

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-------FMLP 160
           I +  G   +      L ++  G        +  +     +L   A+           L 
Sbjct: 165 IAVASGLTLLASMEDALPVIMAGDIDASAKIVVAAIVWTFSLIALAILWRRRSHSVLDLW 224

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT---------YHLFKSN 211
             V +  +    AL+       + L      +     + F  I            L  S+
Sbjct: 225 LMVVMCAWLFDSALAAVLNHGRYDLGWYAGRIYGLFAASFVLIVLLLENGKLYARLADSH 284

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +  S   +   L  +LE   +L  E  ++ +E +  KS FLA+MSHELRTPLNAI+GFS
Sbjct: 285 ERERSKTKDLQQLTVQLESVNNLLAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFS 344

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV++   +G +      E++ DI  SGQHLL+LIN+ILDLS+IEAG+  L      +  +
Sbjct: 345 EVLKDGLVGEIT-PKQHEFVSDIFASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAM 403

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +R  + +++ +A    I +   +   L     D +  +Q++ NLLSNAVKF+A  G+V +
Sbjct: 404 LRNSLSIVKEKASAHAILLQFDVAEPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTL 463

Query: 392 TVGWTS------------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
                                              I++ D G GI+  ++P +  +F Q 
Sbjct: 464 QARKVQRAAIETWATQQPTSLRMPLPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQL 523

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             ++    +G GLGL +   ++  HGG   + S    G      LP  R  +    D  E
Sbjct: 524 DSSLSRVSEGTGLGLALVLKLVQLHGGTVALASTPGHGSTFTVWLP-WRKTDAATGDTDE 582

Query: 488 STQYKCYA 495
           +      A
Sbjct: 583 TAPLHAVA 590


>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1112

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + +++AE+ ++AKS FLA+MSHE+RTP++ I+G  +++  E+     +
Sbjct: 558 ITERKNAEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASES----AD 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++ K+ +     S + L  +IN+ILDLS++EAG+ +L     SL  +VR  + +  ++A+
Sbjct: 614 QSRKDLVDMTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQAR 673

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
            + I +    D  L   V  D   + QV+ NL+SNAVKFT   G V + V          
Sbjct: 674 NQGIALKVDADSRLPEYVRGDAHRLEQVLRNLVSNAVKFTQA-GHVLIRVKAMDIDEHKA 732

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D+G GI+   +P++  SF Q  I      QG GLGL I+Q ++   GG+  ++
Sbjct: 733 TVEFQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQ 792

Query: 460 SKLREGVEVIAIL 472
           S    G      L
Sbjct: 793 STPGRGSVFSFAL 805


>gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1]
 gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1]
          Length = 1689

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 8/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + +  ++     + +A+  N AKS FLA+MSHE+RTP+NAI+G S +     +     
Sbjct: 932  ITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGMSYLALQTDLA---- 987

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E  K+YI  +H++   LLN+IN+ILD S+IEA +  +      L +++ +   ++  + +
Sbjct: 988  EKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIGFKVE 1047

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400
            E ++ +   I          D + + Q++LN  +NAVKF+  G  + ++        G  
Sbjct: 1048 ENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSDILLSCQAELDKQGAT 1107

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
                + D+G GI   +   +  SF QG  +      G GLGL I + +     G+    S
Sbjct: 1108 LTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEVWCES 1167

Query: 461  KLREGVEVIAIL 472
            +L +G      L
Sbjct: 1168 ELGQGSRFYLRL 1179


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 13/324 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKIL 215
           L         P+  +  T      H   +++   L   L     +        ++++K L
Sbjct: 542 LMTRAAAGMGPL-ASELTHGRHGPHARHLAVPVRLDGRLGAVAVLLDKPTPFTRADIKQL 600

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                      E   +       ++ AE  N AKS FLA+MSHELRTPLN +LG  +++E
Sbjct: 601 DLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE 660

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    NE     +     SG+ LL ++++ILDLSRIEAGR EL     S  + VR+ 
Sbjct: 661 AGDLDRDQNE----LVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQV 716

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-- 393
             M    A+ + + +  + D     VW D   +RQ++ NLL NA+KFT   G V V V  
Sbjct: 717 YDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHE-GTVGVEVCA 775

Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                       S+ D G GI    + ++   F Q   +      G GLGL I + ++  
Sbjct: 776 VRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHL 835

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG   + S L EG  V   LP  
Sbjct: 836 MGGGLNVESALGEGTAVHVCLPFR 859


>gi|54308425|ref|YP_129445.1| putative sensor protein TorS [Photobacterium profundum SS9]
 gi|46912854|emb|CAG19643.1| Hypothetical sensor protein TorS [Photobacterium profundum SS9]
          Length = 983

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 18/306 (5%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDE--- 237
           H+    +      +  F   +     +  +++     E+      +ELE   S  +E   
Sbjct: 395 HMGRAIMVARDTASERFRLTLVERKIRQELQLHKESLERLVAQRTSELEKTNSRLNEEVI 454

Query: 238 ----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                R  AE+ N AKS FLA+MSHE+RTP+N ILG + ++    +    N+    Y+  
Sbjct: 455 NHEKARAEAEKANRAKSAFLATMSHEIRTPMNGILGTASLLGDTGL----NQQQARYLNV 510

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+RSG+ LL+++N+ILD S+IEAG  ++     SL ++V +   ML+ RA  K+I++   
Sbjct: 511 INRSGETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNH 570

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGP 410
           ID S+++VW  D   +RQV++NL+ NA+KFT   G+V + V             + D+G 
Sbjct: 571 IDDSMNNVWLGDVTRIRQVLINLVGNAIKFTDQ-GQVTIAVSMNPDMPDELLFEVTDSGI 629

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E E   +  +F Q     K+   G GLGL I++ I+A   G+  + S +  G     
Sbjct: 630 GIDEAEQDILFNAFKQAEEGRKT-IGGTGLGLAISRHIVAAMEGEIGVDSTINVGSCFWF 688

Query: 471 ILPNTR 476
            +P  R
Sbjct: 689 SIPLER 694


>gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1001

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 178/444 (40%), Gaps = 29/444 (6%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPM--WSL-ITLAVYAANLSLGKKVMNSDIKIGEVY 104
            +     +    A I   F    +F    W +   L   A +     +    ++      
Sbjct: 203 YALSTLFYASAWAAIFGVFEYLNLFSAKDWLMPGFLLGCAFSAFFQIEFFRLNLTAKRTM 262

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS-------NF 157
           ++ + L    +       L             ++I  +A LL  LS+  ++         
Sbjct: 263 LFLLALGCLCLLA-----LPIAFYNQALGLIIVSILTTAVLLTGLSVGLVAWKRGYKPAR 317

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILS 216
               A      P VV       +   +  DI L G +  A            K  +  L 
Sbjct: 318 YFVIASLCVIIPNVVGNLLNLRVLPSINVDIYLLGFIGIAADTLILAFALAEKMRLVNLR 377

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILG 269
               K  L   +E       E  ++         E NLAK  FLA+MSHE+RTPL +I+G
Sbjct: 378 NSQLKSQLKQTVEFRTQALREANQKLAQSNQELIEANLAKDHFLANMSHEIRTPLTSIIG 437

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +++ +    +G ++    +     I+++G HLL +IN+ILDLS+I+A + +       L 
Sbjct: 438 YADGML---LGDIDKTEQERVTSIIYQNGAHLLRIINDILDLSKIDANKLDFKSQPCHLF 494

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++ +   ++  RA++K +      D  L   +  D   ++Q++ NL +NA+KFT   G 
Sbjct: 495 SLLGQIESVVGKRAKDKGLGFHVNYDFPLPEKIITDATRLKQILFNLTNNALKFTHS-GH 553

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + V   +G    I++ D G GI++ ++  +   F Q    I     G GLGL IA+ +
Sbjct: 554 ICLDVKA-AGSTLTINVVDTGEGISQNDVQKLFNPFTQADSVINRQVGGTGLGLSIAKRL 612

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
               GG    +S+ R+G      +
Sbjct: 613 AQGLGGDINAKSQPRKGSTFTITI 636


>gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 751

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 17/341 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-- 221
            +   P     +    +   ++   +   +  A      I   L KS  + +  + E   
Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENNT 340

Query: 222 --DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             + +  EL  AK  +++  + A   + +KS FLASMSH++RTP+NAI+G + +I     
Sbjct: 341 RLETINTELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH--- 397

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              N +   EY+  I  S QHLL +IN++LD+S+IEAG+   S S  S+++ ++E   M 
Sbjct: 398 DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMF 457

Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             + +EK+  +    +  +   V +D   + Q+  NLLSNAVK+T  GG++   V     
Sbjct: 458 CPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECET 517

Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +       + ++ DNG G++E     +  +F +   ++ +  QG GLG+ I ++++   G
Sbjct: 518 KSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMG 577

Query: 454 GQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490
           G   + S+L  G          +    V + +  +  E+  
Sbjct: 578 GTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618


>gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 669

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          E  K Y 
Sbjct: 407 EQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PTADTPEEQKLYS 462

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+++   LL LIN+ILDLS+IEAG  E  +  I+L ++ R    + + R +   ++  
Sbjct: 463 DIINQNSDILLQLINDILDLSKIEAGTLEYVKRPINLGEVCRTIYAVHKERIKG-GVDFI 521

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                    +  D   + Q+I N ++NA KFT   G +        G    + +KD G G
Sbjct: 522 FDNGEEDLQMEGDPNRIMQIITNFITNATKFTHA-GEIRFGFER-EGENVRVYVKDTGIG 579

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++  +   F +      S  QG GLGL I + I+   GG+  + S+  +G     I
Sbjct: 580 IEKEKVGHIFERFVKL----NSFVQGTGLGLSICRMIIEKIGGEIGVTSEFGKGSTFYFI 635

Query: 472 LP 473
           +P
Sbjct: 636 IP 637


>gi|300773123|ref|ZP_07082992.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759294|gb|EFK56121.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1198

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 180/390 (46%), Gaps = 17/390 (4%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
             LL+  I  G+C  ++ L     +    +  +K A+  I+L+++A  +      +    
Sbjct: 383 HILLLPVILNGMCIGVIELGSAHKFDALKIGFFKEASSTISLALAAAKSRKQVQTLLEET 442

Query: 168 FPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILS---CQAEKD 222
                 L  Q     ++     A    L  +          L +SN ++        EK+
Sbjct: 443 QAQAEELQAQHSELENLNTELEAQTQKLQASEEELRVQQEELLQSNQELEERSKLLEEKN 502

Query: 223 DLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETM 279
            LIAE  +      E +++AEE  L+   KS FLA+MSHELRTP    +     +  E  
Sbjct: 503 HLIAERNL------EIQEKAEELALSTKYKSEFLANMSHELRTP-LNSILLLSRLLSENT 555

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               NE   E    I  SG  LL+LI+EILDLS+IEAG+ EL    + L D+ +E   + 
Sbjct: 556 DDNLNEDQIESAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVKLSDVTQELNSLF 615

Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
               +EK +++   + P L S++  D   + QV+ NLLSNA+KFT+ G   + +T   ++
Sbjct: 616 APIVKEKALDLNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSN 675

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++KD G GIAE +   +  +F Q   + +    G GLGL I++ I    GG+  
Sbjct: 676 RNNIVFAVKDTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGLGLSISREIARLLGGEIR 735

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++SK  EG     I+P ++    I     E
Sbjct: 736 LQSKENEGSIFSLIIPKSKQTTAISPSTDE 765


>gi|254448236|ref|ZP_05061698.1| periplasmic Sensor Hybrid Histidine Kinase [gamma proteobacterium
           HTCC5015]
 gi|198262103|gb|EDY86386.1| periplasmic Sensor Hybrid Histidine Kinase [gamma proteobacterium
           HTCC5015]
          Length = 527

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 183/474 (38%), Gaps = 40/474 (8%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
               RE+           +  +  F++ +A I   F + P    W++  +        L 
Sbjct: 28  PRVLRELFLAQYRQFTLNTTAILFFLIALAIIFHDFLRTPSVLAWTVAHMLTGPYFTYLF 87

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIAL 149
           ++  N      + + W +  L  +   G  W ++ L   P         I   + ++IA 
Sbjct: 88  RRFSNIPEHKRDYFKWYVISLRMECFSGFMWGIMPLAFFPIYDNLTLPIIILGSVIVIAA 147

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +++ +         F  + P  + L    I+ +      +  +    L      + ++ +
Sbjct: 148 AMALM----FLPGGFAVYGPPAIFLQATTIIWLRPDLFIMGLLGYMYLGMSVVTSLNVNR 203

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +  +    + +  D++  +E                N+AKSRFLAS SH+LR PL+A+  
Sbjct: 204 AVARASLLRFKNQDMLESVEQ--------------ANVAKSRFLASASHDLRQPLHALSL 249

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              V+  +       E  ++ +  + +S   L  L N +LD+S+++A   ++    + L 
Sbjct: 250 LLGVLSNKR------EYREDIVQRMQKSVSSLEMLFNSLLDISKLDANAVDVHIQDVPLG 303

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           D++ +        A +K +     I+P  + V +D   +++++ NL+SNA ++T  GG +
Sbjct: 304 DVLHQLKEDYSGAAVQKGLGFHIDINPQHA-VRSDPILLKRILSNLISNAFRYTPAGGHI 362

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V      G    I ++D GPGI   +   +   F Q     +   +G+GLGL I + + 
Sbjct: 363 DV-AARQEGDKLVIEVRDTGPGIPADKHEEIFAEFVQLDNPERDRNKGLGLGLAIVRRLC 421

Query: 450 ANHGGQFLIRSKLR-----EGVEVIAILP------NTRVL--NFIPEDNHESTQ 490
                   + S         G       P       +RV   +  P  N E + 
Sbjct: 422 HLLAHDVDLHSTADPLSGHTGTTFCIRAPLGAAPSASRVAMRDAPPASNSEHSD 475


>gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
 gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
          Length = 762

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 17/341 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-- 221
            +   P     +    +   ++   +   +  A      I   L KS  + +  + E   
Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENNT 340

Query: 222 --DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             + +  EL  AK  +++  + A   + +KS FLASMSH++RTP+NAI+G + +I     
Sbjct: 341 RLETINTELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH--- 397

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              N +   EY+  I  S QHLL +IN++LD+S+IEAG+   S S  S+++ ++E   M 
Sbjct: 398 DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMF 457

Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             + +EK+  +    +  +   V +D   + Q+  NLLSNAVK+T  GG++   V     
Sbjct: 458 CPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECET 517

Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +       + ++ DNG G++E     +  +F +   ++ +  QG GLG+ I ++++   G
Sbjct: 518 KSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMG 577

Query: 454 GQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490
           G   + S+L  G          +    V + +  +  E+  
Sbjct: 578 GTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618


>gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
 gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
          Length = 828

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217
           A+  S   +V+ +             S    +   L+          K     + ++   
Sbjct: 238 AMITSGVILVIVMLCWLGFGTWFRVNSKLDAIIHTLTALINDEEKQTKVKVDGSDELTIF 297

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++   
Sbjct: 298 AQQVNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 357

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        +E + DI  S Q LL L+N+ILDLS+IE+GR ELS     + ++V + ++
Sbjct: 358 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMV 413

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + Q +A  K +E+   +  ++   V  D+  ++QVI NL+SNAVKFT   G + V V + 
Sbjct: 414 LFQSKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFT-ESGHIRVDVSYD 472

Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        ++D G GI + ++ T+   F Q    +     G GLGL I + +++ 
Sbjct: 473 ELSEKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSM 532

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GGQ +  S    G      +
Sbjct: 533 MGGQLIATSTKGVGTCFEFSI 553


>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1090

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 35/297 (11%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K  +K           I E + A+    + ++ A+  N AKS FLASMSHELRTPLNA
Sbjct: 552 ISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNA 611

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILGF++V+  +      N  +++ +  I RSG+HLL LIN+IL++S+IEAGR     ++ 
Sbjct: 612 ILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSF 668

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++     ML L+AQEK +++  +  P +   +  DE  +RQV++NLL NA+KFT  
Sbjct: 669 DLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEE 728

Query: 386 GG---RVHVTVGWTSGR---------------------------GQYISIKDNGPGIAEG 415
           GG   RV   V    G                                 ++D+GPGIA  
Sbjct: 729 GGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPE 788

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E+  +  +FGQ     + A++G GLGLPI++  +   GG   + S L +G      +
Sbjct: 789 EVDQLFAAFGQTETGRQ-AQEGTGLGLPISRKFVQLMGGNISVSSILGQGSLFAFSI 844


>gi|229515211|ref|ZP_04404671.1| sensor histidine kinase [Vibrio cholerae TMA 21]
 gi|229347916|gb|EEO12875.1| sensor histidine kinase [Vibrio cholerae TMA 21]
          Length = 736

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVK--VKLAITEPVTEDVKPTKAKTY 599


>gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 1064

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 15/265 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D+  +  VA+ L+   +     + N  K  FLA +SHEL+TPL A+LG S +++ + +
Sbjct: 325 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 382

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L++    +Y   IH+SG+HL+ ++N+ILDL+RIE G+ EL+   +++  +    +  +
Sbjct: 383 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAV 441

Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
               Q+ +I+             +I+P L ++ ADE  +RQ+++NL+SNA KFT  GG +
Sbjct: 442 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYM 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V          ++ D G GI E +   +   F Q    +    +G GLGL + Q + 
Sbjct: 502 GLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLA 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG     S   +G E   +LP 
Sbjct: 561 RLHGGDISFISHQGKGTEFTLLLPP 585


>gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 802

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ A   N  K  FLA++SHE+RTPLN ++G  +V+    +    N+ ++  I
Sbjct: 413 EKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQVMNSAKL----NQEHRNCI 468

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
               +S ++LL ++++ILDLS++E G  +L E   SL  ++ E I + + +A++K +++ 
Sbjct: 469 SVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLEESINLFKPQAEKKEVDLS 528

Query: 352 Q-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405
                 + S  + DE  +RQ++ NL+ N++KFT   G + V               + ++
Sbjct: 529 YSIFPETESYYFGDEGRIRQILFNLIGNSIKFT-DHGEIRVEARAGPGTCQDKNNLHFTV 587

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI E     +  SF Q   ++    +G GLGL I + ++    G   I S L  G
Sbjct: 588 SDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRLIELMEGSIKIESSLHHG 647

Query: 466 VEVIAILPNTRVLNFIPEDNHES 488
             +   +         P  N +S
Sbjct: 648 TTISFTISLRIADPPEPNQNKKS 670


>gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 761

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 158/269 (58%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   +EL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 492 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 551

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+I++ILD+S+IEAG  +L   
Sbjct: 552 NAILGFSEILQNQMFGPLGSAKYDEYARDIHDSGKHLLNVISDILDMSKIEAGHLKLHRE 611

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   L ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 612 RIDLVPLIEESLRFTAIPAAEKNILIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 670

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V           ++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 671 NGGRIAVRTRRV-DGAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 729

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ A HGG+  IRS+   G  +   +P
Sbjct: 730 SRSLTALHGGRMKIRSREAVGTVISLRIP 758


>gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 955

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 163/389 (41%), Gaps = 31/389 (7%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            ++V        W LLT V           +Y    L+ A SI AL    +   + ++  
Sbjct: 329 RVIVAARIAAPDWVLLTDVPRAALLSSVKGLYWDYWLIAAFSILALVALPVLVIMRVTLP 388

Query: 169 PV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            V  +  + + I    +     A      +     +     +      +     ++L   
Sbjct: 389 SVRQLVTAAERIRGGDLEQRFEASGTREFVHIGDALNGMAQQLRETFAALAKTNEELEQR 448

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E   +   E    A+  N AKS FLA+MSHELRTPLN ILG++++++         E  
Sbjct: 449 VEQRTAELKEATVAADAANRAKSDFLANMSHELRTPLNGILGYAQILKRSR---SLGEQD 505

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              +  I  SG HLL LIN++LDL++IE+   E+  +       +     + ++RA++K 
Sbjct: 506 LRGVEVIAESGSHLLTLINDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKG 565

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399
           I    K  P+L   V AD++ +RQ++LNLL NA+KFT   G V  TV    G        
Sbjct: 566 IAFVFKPGPALPEGVRADQRRLRQILLNLLGNAIKFT-ENGSVTFTVAEVPGGSRGARKD 624

Query: 400 ---------------GQYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLP 443
                               I+D G GI    +  +   F Q    +     +G GLGL 
Sbjct: 625 LPEDGASPESRTKTHRIRFEIEDTGTGIGAEHLDQIFLPFKQVGDKSRHR--EGTGLGLA 682

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I+Q I+   GG   +RS+L +G      L
Sbjct: 683 ISQRIVTLMGGSIQVRSELGKGSVFWMDL 711


>gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
 gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
          Length = 896

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN++   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             + +  P++  E T
Sbjct: 749 ATIEDVTPDEVIEET 763


>gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
          Length = 805

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 141/272 (51%), Gaps = 12/272 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++  +    Q E    + +   AK L ++  K+AE+ N AKS FL+ MSH++RTP+NA
Sbjct: 374 LSRNIDEERRVQQET---LEKERQAKLLLEDALKKAEKANKAKSDFLSRMSHDIRTPMNA 430

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G +E+ +   +   + E  ++Y+  I  SG HLL LINEILD+S+IE+G  ELSES +
Sbjct: 431 IIGMTELAQ---LHIGDEEKQRDYLNKIASSGAHLLGLINEILDVSKIESGVMELSESPL 487

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L  +  E   M+++  +    E    ID S    V  D + +RQV++N+L NA K+T  
Sbjct: 488 NLRALAGEAAEMVRISMENSQQEFQVDIDESFDPWVMGDARRIRQVLVNILENASKYTGQ 547

Query: 386 GGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G++  +V                I+D G G+    +  +   F +   +  S   G GL
Sbjct: 548 RGKITFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHIFEPFSRADDSRTSKVPGTGL 607

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G+ I +++++   G   + S+  +G      L
Sbjct: 608 GMTIVKNLISMMDGDIRVESEYGKGSRFTVTL 639


>gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB]
 gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 680

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +   + +++   +     +  L  E+      S + R+RA   + AKS FLA+MSHE
Sbjct: 118 YRGVGRDVTETHSMQVELHRYRSHLEDEVRRRTEESLKERERAISASQAKSIFLANMSHE 177

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G + ++  E           E +  +  S  HLL++IN+ILD+S+IE+G  
Sbjct: 178 IRTPMNAIVGLTHLLRKEI----TTPAQLEKLAQVSASADHLLSVINDILDISKIESGNA 233

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L E    L  ++R    ++ LRAQ K +E+   I    + +  D   + QV++N L NA
Sbjct: 234 ALDELDFELEGMIRRVSSVIALRAQAKGLELIVDIRTLPTVLHGDPTRLSQVLINFLGNA 293

Query: 380 VKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           VKFT  G    R  +     +       ++D G GI+      +  +F Q   +      
Sbjct: 294 VKFTVQGSITLRGRIEAETATDMVVRFEVEDTGIGISPDAQEKIFEAFEQADQSTTRNYG 353

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           G GLGL IA+       G   +RS    G          +V    PE
Sbjct: 354 GTGLGLAIAKHAAKMMKGDVGVRSTPGVGSVFWITARLGKVNAAGPE 400


>gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
 gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
          Length = 1994

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 11/268 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+  +    E R +A   NLAKS FLA+MSHE+RTP+NA+LGF  ++E   + P + 
Sbjct: 1216 ITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQRALDPTSA 1275

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  ++    IH +GQ LL LIN+ILD S+IEAG  E+  +   L +++     ++   A 
Sbjct: 1276 DLVRK----IHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAAG 1331

Query: 345  EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            +K +E+        +  +  D   ++QV++NLL NA+KFTA  G V + V   +  G   
Sbjct: 1332 DKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTAR-GEVELRVEQVAEHGDRL 1390

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                +++D G GIA      +  +F Q   +I     G GLGL I+Q ++   GG+  + 
Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450

Query: 460  SKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S L +G      L   R     P+   E
Sbjct: 1451 STLGQGSAFYFTLALQRD-PNAPDPAAE 1477


>gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 810

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/313 (33%), Positives = 158/313 (50%), Gaps = 11/313 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               +        + A  LA  +     I+  L    V  L+ Q     L  +LE +   
Sbjct: 279 IALLVEMKQWEAFAPARQLAITVVLVGLISVALLSICVYWLAKQLSLSRL--QLENSSRQ 336

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            ++  + AE  N AKS FLA MSHELRTPLNAILGF++V+E + +        +E +  I
Sbjct: 337 LEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERDPLLTH---QQQESLAII 393

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           +RSG+HLL LIN++L++S+IEAG+  L   A  L ++++    M Q RA+ K + +   +
Sbjct: 394 NRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVNL 453

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGP 410
              L   V +DE  +RQV++NLLSNAVKFT   G V +   +   T       ++ D G 
Sbjct: 454 AADLPRYVISDEGKLRQVLINLLSNAVKFTDQ-GTVTLEAAYQHHTGANYLTFAVADTGR 512

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  E   +   F Q +  +K+ E+G GLGL I++  +   GGQ    S+L +G     
Sbjct: 513 GIAPEEQEHLFQPFFQSAAGLKT-EEGTGLGLSISRQFVDLMGGQISANSQLGQGTVFKF 571

Query: 471 ILPNTRVLNFIPE 483
            +        + +
Sbjct: 572 EIKVELAAPVVSD 584


>gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1287

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 22/307 (7%)

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            +  +  L   L F +       ++   ++   +++  +  E     +   +  ++  E N
Sbjct: 830  LIASARLLGTLCFGSRSCSRFTENQRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREAN 889

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              K  FLA +SHELR+PLNAILG+++++    +  +      + +  I R+ +    L+ 
Sbjct: 890  RMKDEFLAILSHELRSPLNAILGWAQLLRSRKLSDI---QIAKAMETIERNARMQTQLVE 946

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIM--LQLRAQEKNIEIFQKIDPSLSS---- 360
            ++LD+SR+  G+  L     +L+ ++   +    L  +A+E ++ I     P +      
Sbjct: 947  DLLDISRMIRGKLHLHVCTCNLVPLIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSR 1006

Query: 361  --VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDN 408
              V  D + ++Q+I NLLSNA+KFT  GGR+ + +  +                I + D 
Sbjct: 1007 FLVSGDIERLQQIIWNLLSNAIKFTPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDT 1066

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467
            G GI    +P V   F Q   +   +  G+GLGL I + ++  HGG   + S+   EG  
Sbjct: 1067 GIGIKPEFLPYVFDRFRQADSSSTRSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGAT 1126

Query: 468  VIAILPN 474
                LP 
Sbjct: 1127 FTVKLPL 1133


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1202

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +E+  + +  + AKS FLA+MSHE+RTP+NAI+G S +     +        + YI 
Sbjct: 473 EELEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDN----KQRHYIS 528

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            ++ S Q LL +IN+ILD S+IEAG+ E+     SL  ++ E I ++   A++K + +  
Sbjct: 529 KVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLII 588

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKD 407
            +   +   +  D   ++QV+ NL SNAVKFT   G V V V              ++KD
Sbjct: 589 DVASDVPDQLIGDPLRIKQVLTNLTSNAVKFTET-GEVRVKVSTAMMRERECKINFAVKD 647

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+   +I ++  SF Q   +      G GLGL I ++++   GG+  + S+L EG  
Sbjct: 648 TGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVESRLGEGAR 707

Query: 468 VIAIL 472
               L
Sbjct: 708 FSFSL 712


>gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca]
          Length = 1064

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 15/265 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D+  +  VA+ L+   +     + N  K  FLA +SHEL+TPL A+LG S +++ + +
Sbjct: 325 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 382

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L++    +Y   IH+SG+HL+ ++N+ILDL+RIE G+ EL+   +++  +    +  +
Sbjct: 383 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAV 441

Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
               Q+ +I+             +I+P L ++ ADE  +RQ+++NL+SNA KFT  GG +
Sbjct: 442 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGSM 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V          ++ D G GI E +   +   F Q    +    +G GLGL + Q + 
Sbjct: 502 GLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLVLCQRLA 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG     S   +G E   +LP 
Sbjct: 561 RLHGGDISFISHKGKGTEFTLLLPP 585


>gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
 gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
          Length = 554

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 14/271 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +   +      +E R+ AE     K+ FLA+MSHE+RTPLNAI+GF+ ++     G  
Sbjct: 168 RDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLL-----GTA 222

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +++    Y+  I  +   LL L+N+ILD+S+IEAG  E   + + +  I+RE   + +LR
Sbjct: 223 SDQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGIFRLR 282

Query: 343 AQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            +E ++ +    +P L    +  ++  + QVI N LSNA K+T   G + +         
Sbjct: 283 LEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQ-GSITMGYEIRENG- 340

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI E ++  V   F +         QG GLGL I+++I+   GG+  + S
Sbjct: 341 ICFYVSDTGTGIPEDKVSQVFERFTKLDAKR----QGTGLGLSISRTIIKKMGGEIGVTS 396

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           K  EG     +LP  +  +F+P  + E  Q+
Sbjct: 397 KYGEGSTFWFVLP-EKPFDFLPLQSEEKEQF 426


>gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 915

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 35/337 (10%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ 213
           +    + AL     + +         +   + +        L ++ +             
Sbjct: 345 TIILCIFALLIATGLGILTSQWIAVPIQRLSQASSAIADGKLNQTVIVKGVSEIQVLGES 404

Query: 214 ----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                   Q     L   ++   +   E +  AE  N AKS FLA+MSHELRTPLN ILG
Sbjct: 405 FNKMARQLQDSFTALEVRVKQRTAELQEAKLAAELANSAKSEFLANMSHELRTPLNGILG 464

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +++++          ET  + +G I + G HLL LIN+ILDLS+IEA + E+  +    +
Sbjct: 465 YAQILMR---SKNIQETDLKGLGIIQQCGSHLLTLINDILDLSKIEARKMEIYPNQFHFL 521

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
             ++    +++++A++K I    + DP+L   V ADEK +RQV++NLL NAVKFT   G 
Sbjct: 522 AFLQAVSEIVRIKAEQKGITFISQFDPALPVSVQADEKRLRQVLINLLGNAVKFTEE-GS 580

Query: 389 VHVTVGWTSG-------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           V   VG                       I+D G G++E +   +   F Q   + K   
Sbjct: 581 VTFKVGVIESSTIDAEASTFNAINKIRFQIEDTGLGMSEEQKQKIFDPFEQVGDS-KRRA 639

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +G GLGL I+  I+     Q  + S+L EG +    L
Sbjct: 640 EGTGLGLAISSKIVEVMSSQIRVTSQLGEGSQFWFDL 676


>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 1092

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            F  +     +    +   +     L  + E++  ++       R+E  + AKS FLA+M
Sbjct: 497 IFRVVGERWIQLEAAVSESRRWTVVLTDVTEMKKREAELQLLLARSEAADRAKSEFLANM 556

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N +LG +E++    +    +   K +I  I +SG  LL +IN+ILD S+I+A
Sbjct: 557 SHEIRTPMNGVLGMAELLAKTDL----DARQKTFIDIIVKSGNALLTIINDILDFSKIDA 612

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+  L ++A    + V +   +L   A EK+IE+  +  P++   V  D    RQ++ NL
Sbjct: 613 GQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPAVPAMVLGDAGRFRQIVTNL 672

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L NA+KFT  G   V V             + ++D G GI++ ++ ++   F Q   +  
Sbjct: 673 LGNAIKFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASST 732

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
              +G GLGL I   ++   GG   + S+  +G      LP   V 
Sbjct: 733 RRHEGTGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVHLPMPPVA 778


>gi|85113126|ref|XP_964471.1| hypothetical protein NCU02815 [Neurospora crassa OR74A]
 gi|1354473|gb|AAB01979.1| Os-1p [Neurospora crassa]
 gi|28926254|gb|EAA35235.1| hypothetical protein NCU02815 [Neurospora crassa OR74A]
          Length = 1298

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKANEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850

Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   T        + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G +    
Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934


>gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia
           enterocolitica W22703]
          Length = 976

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515


>gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++  L    +       E ++ AE     KS+FLA++SHE+RTPLNAI+G    +     
Sbjct: 206 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 261

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +E  +EYI  IHRSG+HLL L+N+ILD+S+I++G+  L +   SL DIV +  ++ 
Sbjct: 262 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 321

Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             R Q   +E F         + + D   + Q+I NL SNA+KFT   G++ V     + 
Sbjct: 322 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 380

Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G GI+E ++  V   F Q   +      G GLGL I Q +     G 
Sbjct: 381 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 440

Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484
             I S+L  G  V     LP     +F P+ 
Sbjct: 441 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 471


>gi|313497980|gb|ADR59346.1| Integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida BIRD-1]
          Length = 643

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 136/293 (46%), Gaps = 12/293 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +    E + A +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         +Y      S  HLL +IN+ILD SRIE    +L     
Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ + +  ++   +    V  D   +RQ++LNL+ NA+KFT 
Sbjct: 339 NLGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W     Q I    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 399 R-GQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GL IA+++    GG+    S+   G      +P   + N  P      T  + 
Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLA-LANPAPVPLTPPTTART 509


>gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 614

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 16/308 (5%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
           Q   S  +  I               +         ++ +         +EL       +
Sbjct: 296 QPWQSFEIDLIHELTDQVGTAIAHAKLFSESEAITRELRTKSRALRQTNSELTRKHQELE 355

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E +++AEE +  KS FLA+ SHELRTPLN ++GF  ++  +     + E   E+I + H 
Sbjct: 356 EAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLVLDDM--ADDEEEQLEFIQESHN 413

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S  HLLNLIN++LD+++IEA + EL  SA+SL +++ E     +   + + +E    +  
Sbjct: 414 SAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEEIDKSQRTHIENRGLEFNIVLPA 473

Query: 357 SLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------RGQYIS 404
           +L  +  +++ + ++QV+LNL+SNA KFT   G + +T                    IS
Sbjct: 474 TLDEIKLYSNYQRLKQVLLNLVSNASKFTHE-GNITITAEINPQSFEFDKKTWPGLVKIS 532

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLR 463
           + D G G++  +   +  +F Q   A     +G GLGL I+Q ++   GG+    S    
Sbjct: 533 VADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVEAMGGKVKFISMGEG 592

Query: 464 EGVEVIAI 471
            G  V   
Sbjct: 593 LGSTVSFT 600


>gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740]
 gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes]
          Length = 1263

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 35/314 (11%)

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
              + + +  +    + F  ++  +L +   +    +AE                + ++ A
Sbjct: 747  WKMIVQILSIALLFVLFMLFVNRNLSREVRRRREVEAE--------------LLKAKELA 792

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E  N AKS FL++MSHE+RTPLN+ILGF+E+++  ++G       + Y  +I +SG+ L+
Sbjct: 793  ESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI----KEQRYAENILKSGKVLM 848

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++IN+ILDLSR+EAG+  + +  + L  +VRE   +  ++A+EKN+++   ID  L  + 
Sbjct: 849  DIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLVIDERLPKIL 908

Query: 363  -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGE 416
              D   +RQ++ NL+ NA+KFT   G V ++V              + IKD+G GIA+ +
Sbjct: 909  VIDGTRVRQILFNLVGNAIKFTHK-GYVRISVERGERESEGGIELVLRIKDSGIGIAQAD 967

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---- 472
               +  +F Q S        G GLGL I Q +     G+  + S+   G E I  L    
Sbjct: 968  SNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQEGLGSEFIVSLQGVI 1027

Query: 473  ------PNTRVLNF 480
                  P  R+   
Sbjct: 1028 AGVVDQPLERISPS 1041


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 138/305 (45%), Gaps = 18/305 (5%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA---ELEVAKSLSDETRKRAEE---- 244
           +LA + +    +     +  ++    +   + L     E E       + +   EE    
Sbjct: 441 LLADSQALTEELQTQSEELQMQQEELKTFNEKLENQYKESEQKTIELQKAKTALEEQASH 500

Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
               +  KS FL++MSHELRTPLN++L  + ++     G L+     EY   I  SG  L
Sbjct: 501 LALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGNLS-PKQVEYAETILSSGNDL 559

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           LNLIN+I DL++IEAG+  +    ISL +++       Q  A++K ++   ++D  +   
Sbjct: 560 LNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPIARQKLLDFTIQLDNDIPKT 619

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEG 415
            + D+  + Q++ NLLSNA KFT   G V++ V         G     S+ D G GIA+ 
Sbjct: 620 FFTDKNRLMQILKNLLSNAFKFTNE-GCVNLHVQRATKISEKGTQIVFSVSDTGIGIAKD 678

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  +F QG         G GLGL I + +    GG   ++S   +G      +P  
Sbjct: 679 KQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIELQSIKGKGSTFSVYIPTY 738

Query: 476 RVLNF 480
            V   
Sbjct: 739 DVETE 743


>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1101

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 8/264 (3%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             + L+        I E + A  L  E +  AE+ N+AKS FLA+MSHE+RTP+N +LG 
Sbjct: 532 EQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIRTPMNGVLGM 591

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             +I   ++    NE     +     S   LLN+IN+ILD S+++AG+ EL E   +L +
Sbjct: 592 LNLILDSSL----NEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLELEELEFNLCN 647

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-R 388
           ++ + I  + + A  KNI +   I+    + V  D   ++Q++ NL++NA+KFT  G  +
Sbjct: 648 MLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNALKFTHKGEVQ 707

Query: 389 VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           V   +   +         + D+G GI+  +   +  SF Q   +      G GLGL I +
Sbjct: 708 VIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYGGTGLGLAIVK 767

Query: 447 SIMANHGGQFLIRSKLREGVEVIA 470
            +     G   ++SK  +G     
Sbjct: 768 KLCHLMEGDIQVQSKENKGSNFSF 791


>gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +   +AL        +  +  P V+        +  V  +    +    L  +       
Sbjct: 81  SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 140

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              +V   +      D+ A +E A+ + DE + RAE  N+AKSRFLA++SHELRTPLN I
Sbjct: 141 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 199

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++    + P      + Y+     SG+ LL L++ ILD SRIEAGR +L+     
Sbjct: 200 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 255

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           +  +V   + +L  RAQ+K +EI   I   L+++   D   +RQ+++NL  NA+KFT  G
Sbjct: 256 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTG 315

Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V V++  +      G  ++++D GPGI E  IP +   F QG  +     +G GLGL 
Sbjct: 316 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 372

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I + ++    G    RS +  G     +LP       +  +  
Sbjct: 373 ITRRLVERMNGTIEARSTVGRGSTFRVMLPLPAAEGAMSPETP 415


>gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
 gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
          Length = 679

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 10/379 (2%)

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
           G +A               W P      KS  LL+ +   + +   +  A     +PV +
Sbjct: 49  GGLAAFFTTAAFGFAAHVAWRPAENEYRKSLALLVDIGCQS-ACMYIGGAGAAFLYPVYL 107

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                         +     LAT L       +  F +++ +         +IA    + 
Sbjct: 108 WTILGNGFRYGTRYLFAGTALATILFGLVLAAHDEFNAHLGMSVSLLCGLPIIALYSRSL 167

Query: 233 SL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +   + +  AE  +LAKSRF+AS+SHELRTPLNAI+G S+++    +     E  +   
Sbjct: 168 LVKLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRLDADQTEMNR--- 224

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  +G+ LL  IN ILD SR+E GR    ++  +L D V +   M+  +A+ K +   
Sbjct: 225 -TVSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQ 283

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            ++D  L   V    + + +V++NL +NAVKFTA  G V V V    G      ++D G 
Sbjct: 284 TEVDDDLPQGVCGGRRHLEEVLVNLAANAVKFTAD-GTVSVHVRRADGDMVRFEVRDTGI 342

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA      +  +F Q    I  +  G GLGL I + ++  HGG+  + S++  G     
Sbjct: 343 GIAPEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWF 402

Query: 471 ILPNTRVLNFIPEDNHEST 489
            LP       +P+   E  
Sbjct: 403 ELPL--PEAPLPQAVREDA 419


>gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1159

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 9/369 (2%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           ++  +  G+   ++ L       P  + +   A+  +A+++ +  +     A+       
Sbjct: 334 VLPAVHNGVVHAVIELGFFRPVQPIDMDMLSRASEQLAVAVRSAIDRSQLEALLDETQRQ 393

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
              L  Q    + V +  L             +     +        + +   L  + + 
Sbjct: 394 AEELQAQ-QEELRVSNEELEQQSRVLQESQAQMEAQQTELEQSNAQLEEQTQQLEYQKQQ 452

Query: 231 ----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                 +LSD+ R   E+ +  KS FLA+MSHELRTPLN+ L  ++++     G L  E 
Sbjct: 453 LLRAQDALSDKARD-LEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTEEQ 511

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + Y   IH +G  LLNLIN+ILDL++IEAG+  +    +++   V+  +  L+  A+EK
Sbjct: 512 VR-YAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSIVEPLRPLAREK 570

Query: 347 NIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           N+     ++P +  V   D + + Q++ NLLSNA+KFT   G V + V          S+
Sbjct: 571 NLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSV 629

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI E +   +  +F Q   +      G GLGL I++ +    GG   ++S   +G
Sbjct: 630 RDTGIGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQG 689

Query: 466 VEVIAILPN 474
                +LP 
Sbjct: 690 SVFTLVLPV 698


>gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 841

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 179/417 (42%), Gaps = 23/417 (5%)

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
               +W L   A       + ++     +++ E       +    +A G   T       
Sbjct: 204 WHTGIWLLGI-ATILLLHYIARRRTADLLRVEEGRR-ENEMAFAAMAEGAVITDSEGTIL 261

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH------ 183
                       +   +I  +   L + +     + + +  ++          +      
Sbjct: 262 WVNDAFCQISGYAREEVIGANPRILKSGVHDRDFYAALWRQLMQTGHWRGEIWNKRKNGE 321

Query: 184 --VLDISLAGMLA--TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +IS+  + A   ++  +  I   + +         +  + L  ++          R
Sbjct: 322 IYPEEISMQALRAPNGSIHRYISIFSDITERKKTERELASHHERLEEQVRERTEELSVAR 381

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE  N +KS FLA+MSHELRTPLNA++GFS+++E     P      +  +  I+ SG+
Sbjct: 382 DQAEAANQSKSAFLANMSHELRTPLNAVIGFSQLMEK---DPGLLPVQQRNLEIINHSGR 438

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+IL+LS+IE+G+  ++     L  ++ + + M+ LRAQ+  +++  +      
Sbjct: 439 HLLTLINDILELSKIESGKLRMTTEETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPP 498

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEG 415
            +  D    RQ++LNLLSNA+KFT   G V + V   +          S++D G GI+E 
Sbjct: 499 LIVIDPGMFRQILLNLLSNALKFTPK-GEVCLHVAAEAVSAQQSRIRFSVRDTGIGISEN 557

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   + +SF Q        + G GLGL I++  +   GG+  + S+L  G +    +
Sbjct: 558 DRERIFSSFEQVGP---MHQGGTGLGLTISRRYVEMLGGELSVDSELGNGSDFHFTI 611


>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 963

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/262 (36%), Positives = 141/262 (53%), Gaps = 10/262 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  KD L  E++   S     R  AE  NLAKS FLA+MSHELRTPLNA+LGFS ++ 
Sbjct: 477 ELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLR 536

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                PL ++  +  +  I+RSG++LL LIN++L++++IEAG  +L  + + L  +VR+ 
Sbjct: 537 K---DPLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDV 593

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             M+Q+RAQEK +++           +  DE  +RQ+++NL+ NAVKFT  GG V V  G
Sbjct: 594 TDMMQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQILINLVGNAVKFTQQGG-VTVRFG 652

Query: 395 WTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA  +   +   F Q        ++G GLGL I +  +  
Sbjct: 653 LKPNTTPAHLLIEVEDTGSGIAAEDQEKIFEPFVQVGEVAM--QKGTGLGLTITRQFVQL 710

Query: 452 HGGQFLIRSKLREGVEVIAILP 473
            GG   + SK   G      LP
Sbjct: 711 MGGSVTLNSKPGSGSLFRVELP 732


>gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1449

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  +   +      +  AE+ N+AKS FLA+MSHE+RTPLN ++GF++++    +    N
Sbjct: 794  ITSMIKQREELKNAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKL----N 849

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            ET ++Y+  +++S   LL++IN+ILD S+IEAG+ EL      L ++  +   ++  + Q
Sbjct: 850  ETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDIITYQVQ 909

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
             K +E+   I P L   ++AD   ++Q+++NLL NA KFT   G + + +          
Sbjct: 910  TKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGNASKFTDQ-GEIELKIEVLSTTGDNT 968

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G GI   +   +  +F Q   +      G GLGL I+  ++   G +  + 
Sbjct: 969  SMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGSKLQLE 1028

Query: 460  SKLREGVEVIA 470
            S   +G     
Sbjct: 1029 SVPGKGSLFYF 1039


>gi|298377882|ref|ZP_06987832.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265328|gb|EFI06991.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
          Length = 942

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 547 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 603

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 604 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 663

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  T            + D G GIAE
Sbjct: 664 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 723

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 724 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 783

Query: 475 TRVLNF 480
            ++   
Sbjct: 784 GKIKES 789


>gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 685

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 101/473 (21%), Positives = 193/473 (40%), Gaps = 18/473 (3%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
            F  ++   +  +   +  ++ +  ++V+ I  +     +        L           
Sbjct: 13  TFSSDMSKEYARADGFMLKLVFVHWVIVSTITAYVFDAYLLGFIGGGALFGITYFAYKSF 72

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
                  +     +  + L    I I      + +         +L IY+   ++   SI
Sbjct: 73  Y----GTQTYRYILALVLLTFSIIMIQQSLGRIEMHFHIFGALSFLVIYRDHKIITLASI 128

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-----YITYH 206
             L + ++   +      +                + L G       F       Y+   
Sbjct: 129 FTLLHHLIFNYLQQYNITIFDTPIVIFNYGCGFDIVLLHGAFVMFEWFVVANIVLYMDKT 188

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             + +    + ++   +L + +E+      + ++ A+  N  KS FLA+MSHE+RTP+NA
Sbjct: 189 HKELHRAKEALESVNKNLESMVEIRTLELKQAKEEADSANNMKSEFLANMSHEIRTPMNA 248

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GF++++E       N    + Y+  +  S + LL +IN+ILDLS++EAG+ E+   A 
Sbjct: 249 IIGFTDLLEKSVKDTTN----QNYVKSVQDSSKILLAIINDILDLSKVEAGKLEIQHIAT 304

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            +  I  E   +   +A+ K +++   I+ S+ S +  DE   RQV+LNL+SNA+KFT  
Sbjct: 305 DIRTIGDEIKNVFYHKAKSKALKLKVNIEESVPSSLMLDEVRTRQVLLNLISNAIKFTPE 364

Query: 386 GG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G   +++              I ++D+G G+ + E   +  +F Q +        G GLG
Sbjct: 365 GFVNLNIFSSLNQDTNLINLTIEVEDSGIGMDKSEQDKMFEAFAQHTNQSNKEYGGTGLG 424

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           L I + ++   GG   ++S    G     ILPN  +    P     + Q   +
Sbjct: 425 LAITKKLVTLMGGDISVKSSKDNGSTFRIILPNIEIAQSEPIAKLRANQKISF 477


>gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 764

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 146/276 (52%), Gaps = 6/276 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   ++++ +     Q +K++    +        +T   ++  N +KS FL +MSHELR
Sbjct: 343 HLAVAIYQAQLYA-QVQEQKNNFEQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELR 401

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPL  I+G S  +    +    L  +  K+Y+  I  SG+HLL++INEIL+ S +++G+Y
Sbjct: 402 TPLTCIIGLSGTLLHWSQESSNLPIDKQKKYLQTIQNSGKHLLDMINEILEYSNLQSGKY 461

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLS 377
            L+    SL+ + +  I  +   A+ + I +     I+    S +AD + ++Q++ +LL+
Sbjct: 462 VLAVREFSLMKVAKNVIQRVSDEAEHRRINLELDLQINAQQDSFYADPERVQQILYHLLN 521

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT+  G V + + W       + ++D G GI E +IP +  SF Q   + +    G
Sbjct: 522 NALKFTSENGTVTLRI-WRENNQVSLEVEDTGIGIKEEQIPLLFESFQQLENSRRRMYGG 580

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + ++  HGG   + S + +G   I  LP
Sbjct: 581 TGLGLALTKQLVELHGGTIEVESIINQGSTFIVRLP 616


>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
          Length = 1268

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    + +++AE  N AKS FLA+MSHE+RTP+N +LG  +++   T+    ++   +YI
Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              + + + LL L+N+ILD S+IEAG+ EL     SL D++++  ++    A++K +E+ 
Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 635

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407
             +   +   +  D   ++QV++NL+ NA+KFT  G   + +              SIKD
Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   + + F Q   +I     G GLGL I++ ++   GG+  + S+   G  
Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755

Query: 468 VIA 470
              
Sbjct: 756 FSF 758


>gi|332533527|ref|ZP_08409390.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037074|gb|EGI73532.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 815

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 11/279 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +L    ++  L  ++        + +K+++  N AKS+FLA+MSHE+RTPLNA++GFS
Sbjct: 410 MVLLLFNQQQIALTRQVAERTHSLAQAKKQSDLANQAKSQFLANMSHEIRTPLNAVIGFS 469

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +         N  T   Y+  I+ + + LLNLIN+ILD+S+IE+ +  +   A  L  +
Sbjct: 470 SLARET----DNASTLIGYLDKINSASKSLLNLINDILDISKIESQKLVIESIAFDLGAL 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389
           +     M +  A  K IE       P  +    D   + Q++LNL SNA+KFT+ G   +
Sbjct: 526 ITRINNMFEQSAVNKGIEWQVNSKLPLDTWFIGDPMRIEQILLNLCSNAIKFTSQGSVTL 585

Query: 390 HVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           ++   +T+       I++ D G GI   +   +  +F Q   +      G GLGL IA+ 
Sbjct: 586 NIETEFTATNKVQLVITVSDTGIGIKPSQHKKLFNAFTQADSSTSRQFGGTGLGLTIAKE 645

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           +    G    ++S++ +G      +   R+    P+  H
Sbjct: 646 LSQLMGADITLKSEVNKGSTFTFSM---RLETTEPKKEH 681


>gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 762

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 23/344 (6%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +   P     +    +   ++   +   +  A      I   L KS  + +  + E + 
Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENN- 339

Query: 224 LIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               LE   +   + ++ AE+        + +KS FLASMSH++RTP+NAI+G + +I  
Sbjct: 340 --TRLETINTELTQAKRAAEQAFEVSNNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH 397

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 N +   EY+  I  S QHLL +IN++LD+S+IEAG+   S S  S+++ ++E  
Sbjct: 398 ---DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQ 454

Query: 337 IMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            M   + +EK+  +    +  +   V +D   + Q+  NLLSNAVK+T  GG++   V  
Sbjct: 455 TMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEE 514

Query: 396 TSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              +       + ++ DNG G++E     +  +F +   ++ +  QG GLG+ I ++++ 
Sbjct: 515 CETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIE 574

Query: 451 NHGGQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490
             GG   + S+L  G          +    V + +  +  E+  
Sbjct: 575 AMGGTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618


>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
          Length = 865

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL +L I+ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 171 VFISTLLLLFSLCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 224

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 225 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 284

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL++IN
Sbjct: 285 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIIN 340

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L + + E +I+L   A EK +E+  +++  +   V  D 
Sbjct: 341 DVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDS 400

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421
             ++QV+ NLL NA+KFT   G V + V   S   + I     I+D G GI+E +   + 
Sbjct: 401 MRLQQVMTNLLGNAIKFT-ENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLF 459

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I + ++    G     S+L  G      +
Sbjct: 460 QAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHI 510


>gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 716

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 12/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I      +    E R  AE  N AKS FLA+MSHE+RTP+N ++  +E++    +    +
Sbjct: 195 ITPNIRRERELSEARDAAEAANRAKSHFLANMSHEIRTPMNGVVSMAELLRDTAL----D 250

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   I  SG+ LL +IN+ILD S+IEAG+ EL E    L  +V E   ++Q    
Sbjct: 251 EEQQMYADTIRSSGEALLVIINDILDFSKIEAGKLELHEETFDLNAMVGEIFRLIQPGIA 310

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K++E+    D  L  +   D   MRQ++ NL+ NAVKFT   G V V V          
Sbjct: 311 SKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGNAVKFTEK-GHVTVRVLSVPPMDQPD 369

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G  I ++D+G GIA  +   V   F Q          G GLGL I + +++  GG+  
Sbjct: 370 ALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANRRHDGTGLGLAITKRLISLMGGKMW 429

Query: 458 IRSKLREGVEVIAIL 472
           + S++  G      +
Sbjct: 430 LESEVGRGSAFGFTI 444


>gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
 gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
          Length = 1294

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 12/278 (4%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +++  I   +A+  D++A     K   ++  + AEE N AKS FL++MSH++RTP+NAI+
Sbjct: 872  ENHRTICLVRADVTDMLAAERQTKRSLEKALELAEEANRAKSEFLSAMSHDIRTPMNAIM 931

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G + +         + +   + +  I  S +HLL+LIN++LD+S+IE  +  L    I L
Sbjct: 932  GMTALA---CAHIDDQDKVSDCLKKISISSKHLLSLINDVLDMSKIERSQITLGRMKILL 988

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
              ++ +   +++ +A+   I  + + D       + D   + Q+ +N+LSNA+KFT  GG
Sbjct: 989  SRLMHDLAAIIEPQARAAGIHFYVRTDDICNEKFYGDVLRLNQIFINILSNAIKFTPEGG 1048

Query: 388  RVHVTVG-----WTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V   V            +Y  +I+D G GI    +  +   F +   +  S  +G GLG
Sbjct: 1049 TVDFMVEELPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIFEPFTR--SSNTSRVEGTGLG 1106

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            L I + ++   GG   + SK  +G      L   R  +
Sbjct: 1107 LSITKGLVDLMGGVITVESKELQGTVFRVELECERAED 1144


>gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688]
 gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688]
          Length = 1136

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 13/351 (3%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            L            +    TL    ++  L  F     +  S      A     +    +
Sbjct: 560 ALWSYLQSGLSNYLLLMGVTLTFLGALLGLIYFHETLILEKS----AAAALLGPLRLAFL 615

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243
              +     +  ++++  +T    +   +  + Q       I       +   + R+ AE
Sbjct: 616 KVFAALVFASAVIAWWLVLTSESRRVAQEESNRQTGLLLREIELHRQTDAELQQARQVAE 675

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N AKSR++  +SHELRTPLN+ILG++++++ +   P      +  I  I RSG+HLL+
Sbjct: 676 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDVSIP---AARQPAIRVIRRSGEHLLS 732

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           LI   LD++RIE+G+       + L + +++ + M +L+A+ K +    ++   L   V 
Sbjct: 733 LIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVR 792

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           AD+K + Q+++N+L NAVKFT  GG V  +           I I+D GPGI + E+  + 
Sbjct: 793 ADQKRLSQILINILGNAVKFTRQGGVVFRLRYARE---LAVIEIEDTGPGILKEELDEIF 849

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +GS A  S   G GLGL I++ +    GG+  +RS +  G      L
Sbjct: 850 EPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELSVRSVVGSGTVFQIRL 900


>gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 810

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++  +  +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPLPECYLYTDKNRFTQVISNFINNALKFTQQ 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  ++   F +      +  QG GLGL I 
Sbjct: 723 -GCITLGYKQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKL----NTFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 778 KSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
 gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 12/238 (5%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N  KS+FLA+MSHE+RTP+  ++G +E+++   +        +EY+ +I RS   LL +I
Sbjct: 790  NRLKSQFLANMSHEIRTPITGVIGMAELLQDMKLDS----EQREYVENIQRSANALLTVI 845

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVW 362
            N+ILD S++E+GR ++ E   SL  ++++   ML   A+ K++     +   ++    V 
Sbjct: 846  NDILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMVVI 905

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIP 418
             D   +RQ++ NLL+N++KFT   G V  +V              +I+D G GI E    
Sbjct: 906  GDPGRVRQIVTNLLTNSIKFTNQ-GHVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEVRK 964

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F QG  +      G GLGL I ++++    G+  + S L  G      +P ++
Sbjct: 965  KLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIPFSK 1022


>gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 862

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 136/250 (54%), Gaps = 9/250 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E    K   ++  K A+  N AK+ FL+SMSH++RTP+NAI+G S + +     P   E 
Sbjct: 330 EQARQKQALEDACKTAQIANDAKTNFLSSMSHDIRTPMNAIIGMSVIAQANLKAP---EK 386

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++ +  I+ S +HLL+LINE+LD+S+IE+G+ +L    ISL +++ + + + +  A EK
Sbjct: 387 IQDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLISETISLPELIEDVMDVFRPLAAEK 446

Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RG 400
           + E+    D     +V  D+  +RQV++NLLSNAVK+T  GG V + +            
Sbjct: 447 HQELQVNADHVRHENVITDQNRLRQVLVNLLSNAVKYTPDGGCVGLWIREVPSFAKGRGQ 506

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + DNG G++E  +P V   F +      +  QG GLG+ I Q+I+    G   +RS
Sbjct: 507 YEFIVTDNGIGMSEEFLPHVFEPFARAKDPTINQVQGTGLGMAITQNIVRMMNGTIEVRS 566

Query: 461 KLREGVEVIA 470
              +G   I 
Sbjct: 567 NPGQGSRFIV 576


>gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 936

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 13/343 (3%)

Query: 137 LTIYKSATLLIALSISALSNFMLPY-AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
             +     L+I  +        LP   +  +   +V    + A +     +   A +   
Sbjct: 187 FILLFFNILVILGAFHLSKTLTLPINRLSSALNKLVKGQFSGAKLMKLPPEY--AALQKD 244

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L     + +H  +    I     +    +  +E   +      + A E N  KS+FLA+
Sbjct: 245 LLDLSERLEHHNEELIAGIEQSTEDIRRSMDSMEEKSAQLHIANREAMESNRLKSQFLAN 304

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE+RTPLNAILG+++ ++ +      +   + Y+  I +S   LL +I +ILD S+IE
Sbjct: 305 ISHEVRTPLNAILGYTKTLQKDI----TDTQQRLYVDTIEQSTNSLLTIIGDILDFSKIE 360

Query: 316 AGRYELSESAISLIDIVRECIIMLQ--LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG+  L  +  +L  ++ +   +L   L  +EK I++  +    +      D   +RQ++
Sbjct: 361 AGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDLVPEFSQDVPEWFVGDSTRVRQIL 420

Query: 373 LNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NL+ NA+KFT  G    +V +             I D G GIAE +I  +   F Q   
Sbjct: 421 TNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQIIDTGIGIAEHKINRLFKPFSQVDT 480

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I + ++    G+  + S    G      +
Sbjct: 481 STTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGSTFRFTI 523


>gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
 gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
          Length = 896

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 145/315 (46%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++ ++ + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V + IP +  E T
Sbjct: 749 ATVEDVIPAEVVEET 763


>gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
 gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
          Length = 908

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 139/259 (53%), Gaps = 8/259 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              ++  + + ++E+     D  +KRA+E    KS FLA+MSHELRTPLN ++GF+    
Sbjct: 260 QATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---- 315

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +T+    N T ++Y+  I RS  +LL++IN++LD S++EAG+  L      L D + E 
Sbjct: 316 RQTLKTPLNITQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEV 375

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
           +++L   A EK +E+   I P +      D   ++Q+I+NLL NA+KFT  G   + + +
Sbjct: 376 VVLLAQSAHEKGLELTLSIQPEVPDNTIGDPLRLQQIIINLLGNAIKFTERGNIDIRIEL 435

Query: 394 GWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              S     + ++  D G GI+E +   +  +F Q   +I     G GLGL I Q ++  
Sbjct: 436 RSLSTNRVNLEVQIHDTGIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNE 495

Query: 452 HGGQFLIRSKLREGVEVIA 470
            GG+  + S++ +G     
Sbjct: 496 MGGEISLHSRMNQGSTFWF 514


>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
          Length = 1268

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    + +++AE  N AKS FLA+MSHE+RTP+N +LG  +++   T+    ++   +YI
Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              + + + LL L+N+ILD S+IEAG+ EL     SL D++++  ++    A++K +E+ 
Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 635

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407
             +   +   +  D   ++QV++NL+ NA+KFT  G   + +              SIKD
Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   + + F Q   +I     G GLGL I++ ++   GG+  + S+   G  
Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755

Query: 468 VIA 470
              
Sbjct: 756 FSF 758


>gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
 gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
          Length = 1088

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 9/278 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +        VK++      ++   + E  +       + A++ N AKS FLA MSH++
Sbjct: 654 IILAESRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMSHDI 713

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G + +       P   E  +E +  I  S  HLL+LINEILD+S+IE G+ E
Sbjct: 714 RTPMNAIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKGKIE 770

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L+E    L +++ +   + +  A +K  E+  +    + +    D   +RQV++NL++NA
Sbjct: 771 LTEEPFCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLITNA 830

Query: 380 VKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           VK+T  GGR+ V V   +GR         +++DNG G+    +  +   F +   +    
Sbjct: 831 VKYTQNGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRR 890

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            QG GLG+ IAQ I++   G     S+  +G   I  L
Sbjct: 891 VQGTGLGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 928


>gi|3851457|gb|AAC72284.1| Nik1p [Candida albicans]
          Length = 1081

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 956

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515


>gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
 gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
          Length = 983

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 10/250 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I + +  +      + RAEE +  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 598 IITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEK 657

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E    YI  I  + Q LL LI+++LD+++IEA   + + S++ L  ++ E      +R 
Sbjct: 658 SE----YINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRI 713

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
              ++ +    D     V  +   + Q+I+NLL+NA+KFT   G++         +  Y 
Sbjct: 714 TSPDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQK-GKITFGYKLQKEK-IYF 771

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   +   +   F +      +  QG GLGL I +SI+   GG+  + SK+ 
Sbjct: 772 YVTDTGCGIPAEKQDKIFERFIKL----NNFAQGTGLGLSICKSIVDAMGGEIGVDSKVG 827

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 828 NGSTFWFTLP 837


>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 895

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 5/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K A E N AKS FLA+MSHE+RTP+N ILG +++     +        +EY+  +  S Q
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMAQLCLDTPLTA----EQREYLSLVMSSAQ 314

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL++IN+ILD SRIE+G+ ++ E  + +   ++  I      A EK IE+   I P++ 
Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374

Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            V   D   +RQ++ NLL NA+KFT  G  +               I+D G GIA  +  
Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +F Q   +      G GLGL I+  +++  GG+  + S+   G E    LP  
Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVDSQPGAGSEFAFTLPLE 491


>gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 917

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251
           + + + +    + +   E    I +           +E+     D  RK A E +  KS 
Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ +++   M P       +Y+  I +S  +LL +INEILD 
Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370
           S+IEAG+  L     +L D++++ + +L   A  K +E+       + +S+  D   ++Q
Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++ NL+SNA+KFT   G + V               IS++D G G++  ++ T+  +F Q
Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++     G GLGL I++ ++   G +  + S   EG +    L
Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDSTPGEGSQFWISL 509


>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 861

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 10/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +E R RAE  + AKS FLA+MSHE+RTP+N ++G +E++    +     
Sbjct: 309 ITDVKDTQRELEEARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLRESPL----T 364

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y+  I  SG+ LL +IN+ILD S+IEA + +LS  +  L   V E +++LQ  A+
Sbjct: 365 DEQRLYVDTIRGSGEALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQPTAR 424

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGR-- 399
           EK +E+  + D  L   V  D   +RQ++ NL+ NAVKFT   G V V V     +    
Sbjct: 425 EKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGNAVKFTNE-GHVLVRVLGLRHAHGAL 483

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I+++D G G+   +I  +   F Q         +G GLGL I + ++    G+  ++
Sbjct: 484 DVRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGLGLAITKRLVEMMEGEIWVK 543

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S+  +G      +P       
Sbjct: 544 SEPGQGSCFGLRIPLAVAAPS 564


>gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
 gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
          Length = 896

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 6/267 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +  ++          ++++++ N  KS FLA+MSHE+RTP+N I G    +    +   
Sbjct: 506 QISDQVYKQTEKLRLEKQKSDKANKIKSEFLANMSHEIRTPINGIKG----LHYLVLQQT 561

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    KEYI     +   LL ++N+ILD S+IEAG+ +L  S +    +  +   +++  
Sbjct: 562 DMRKVKEYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTE 621

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
              K+I +       S  S++ D+  ++QV+LNLL+NA+KFT   G++ +T+     +  
Sbjct: 622 LNNKDITLLIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQL 681

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+KDNG GIA+     +  +F Q   +      G GLGL I + ++   GG+    S+
Sbjct: 682 RFSVKDNGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVSE 741

Query: 462 LREGVEVIAILPN-TRVLNFIPEDNHE 487
           L  G E    LP      +  P+  HE
Sbjct: 742 LNVGSEFYFTLPQGEFSTDEAPKTQHE 768


>gi|68477999|ref|XP_717003.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
 gi|68478134|ref|XP_716936.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438625|gb|EAK97953.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438696|gb|EAK98023.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
          Length = 1081

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 899

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 160/343 (46%), Gaps = 11/343 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML-A 194
              +     +LI + ++ L  F L   V      V      +    +    I     L  
Sbjct: 173 RAAVAAFIIVLIGVQLNLLFTFRLLKNVTEMVRAVAKIREGKLDTRLQGDLIGELDHLKR 232

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +    ++ +  +    I    ++  + + ++E+     D  +KRA E +  KS FLA
Sbjct: 233 GINAMAASLSEYHNEMQQNIDQATSDLRETLEQIEIQNVELDIAKKRALEASRIKSEFLA 292

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLN ++GF+  +    +     +  K+Y+  I RS  +LL++IN+ILD S++
Sbjct: 293 NMSHELRTPLNGVIGFTRQLLKTPLH----DNQKDYLRTIERSASNLLSIINDILDFSKL 348

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAG+  L     +L D + E + +L   A +K +E+  +ID  +  S+  D   ++QVI 
Sbjct: 349 EAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVVEIDERVPDSLCGDVMRIQQVIT 408

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KFT   G V +++       + +     + D G GIAE + P +  +FGQ   
Sbjct: 409 NLMGNAIKFTDK-GSVRLSLDLADESAERVLLRAEVSDTGIGIAEEQQPMLFQAFGQADS 467

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++     G GLGL I + ++    GQ    S   +G      L
Sbjct: 468 SVSRRFGGTGLGLVITKRLVNQMEGQIGFTSHQNQGSTFWFTL 510


>gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 981

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 15/371 (4%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
            L +  L L     +    +     A ++  L++  +    +   V  S    + AL+  
Sbjct: 135 SLRFATLQLYVTPEYVHRTMKDNVVAAVMHMLALELVLVLGILLVVRRSLIVPLSALTAW 194

Query: 178 AIMSMHVLDISLAGMLAT---ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                 + D                   +   L +   +          L   +      
Sbjct: 195 VRRESPLYDYGTRIPKQADDELGELVDSMNGMLSEIEKRDRMLNDHSKHLEKLVAERTQE 254

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +  R  AE+ + AK  F+ASMSHELRTP+NAI+G  E+     +        +EY+  I
Sbjct: 255 LEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKTELTV----KQREYLTII 310

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S + LL ++N+ILD+S+IEA + EL     S  +++ E   + + R   K +E+   I
Sbjct: 311 RSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLDI 370

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410
           +  + +V   D   ++QV++NL++NA KFT  G  R+ V VG  S        S++D G 
Sbjct: 371 EADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRSQDVVQLEFSVRDTGL 430

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E     +  +F Q   +      G GLGL IA+ ++   GG   + S+  +G +   
Sbjct: 431 GIGEEARNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTITVASEPGKGSDFRF 490

Query: 471 I----LPNTRV 477
                LP   V
Sbjct: 491 TGRFSLPVEAV 501


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1349

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 124/276 (44%), Gaps = 18/276 (6%)

Query: 220 EKDDLIAELEVAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           E   L  +    K  S+E  + A      N AK  FLA+MSHE+RTP+N I+G + ++E 
Sbjct: 668 EVTVLAIQDITYKKRSEEALRYAAVERAANKAKGEFLANMSHEIRTPMNGIIGMASLLED 727

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +        K+ +  I  S + LL +IN+ILD S+IEAG+ +L          V +  
Sbjct: 728 TPLNN----EQKDLLQTISSSAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVT 783

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            ++   A++K ++I   I   +   V  D   +RQV++NL  NA+KFT+  G V V    
Sbjct: 784 ALMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLTGNAIKFTSK-GEVIVRALV 842

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        I D G G+ +  + ++  SF Q   +      G GLGL I++ +   
Sbjct: 843 DEEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRL 902

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR-----VLNFIP 482
            GG+    SK  EG      +   R     V    P
Sbjct: 903 MGGKIGAESKEGEGSLFWFTVKMERPRNMDVAPPAP 938


>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1397

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 135/268 (50%), Gaps = 12/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E        ++ R  AE+ N AKS FLA+MSHE+RTP+N ++G ++V++  ++     
Sbjct: 688 VSERIRILKDLEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGY-- 745

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +  I  S   LL +I +ILD S+IEAGR E+ ++ +S+  +V +   ML+  A 
Sbjct: 746 --QMEMVDLIRESAFALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAA 803

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGR- 399
            K +E+   +DP++   V  D   +RQV++NL +NA+KF++     GRV V         
Sbjct: 804 RKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHDQ 863

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   I DNG G+ E     + TSF QG  +      G GLGL I   ++   GG  
Sbjct: 864 DTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSI 923

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484
            +RS   EG      L    + +   ED
Sbjct: 924 QVRSAPGEGSVFTVRLSFDLIPSSHMED 951


>gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis
           TXDOH]
          Length = 986

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/454 (21%), Positives = 182/454 (40%), Gaps = 35/454 (7%)

Query: 31  MDFDREIITLH-VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
            + D  ++ ++ + ++          +L VA  G  F        W  I L         
Sbjct: 310 PETDWTLLYVYSIRTMMYDVAARMCKILGVALFGFAFL-------WWGIVLVHRRVLTPS 362

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
             + +                 +G   IG     + L        E              
Sbjct: 363 YVRALRLQESEQLNRTLIRTAPIGLALIGEADGTVLLRNKAMARYET------------G 410

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           S     +  L  A+     P   A + +  +  H + ++     A        + +  ++
Sbjct: 411 SSGEPLSQRLWQALAH--VPDEHAPARRRAIVGHEVALAGVNGAAGETYLLVNVAHVKYR 468

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
               +L+   +    I   ++A+   DE R+ A++ N +KS FLA+MSHE+RTPLNA++G
Sbjct: 469 GAQALLATVND----ITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIG 524

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+++   +     +  +  +  +  +   LL+++N++LDLS++EAG+  +        
Sbjct: 525 NLELMKRGPLA----DAQRRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCA 580

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++R+     Q  A  K + +   I P ++ +   D   +RQ++ NLL NA+KFT  G  
Sbjct: 581 VLLRDVTATFQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGS- 639

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             VT+         + + D G GI+   + T+   + Q   +I     G GLGL + + +
Sbjct: 640 --VTLFAAGDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRL 697

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +   GG+   RS   EG E    +P   V   +P
Sbjct: 698 VNAMGGEIAARSVPGEGSEFRVGIPL-PVTADLP 730


>gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 2384

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 161/375 (42%), Gaps = 29/375 (7%)

Query: 129  PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
             G  TP  + +        A ++  L++F     V L+F            + + +  I+
Sbjct: 1551 LGEGTPLSIVVLPVLFEGEARAVIELASFRHFTDVNLAFL-----DQLTQGIGIVLNTIA 1605

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244
                    L     +   L K+N ++        +   E+E      ++ +   EE    
Sbjct: 1606 ATMRTEQLLKQSQALAEQLQKTNAELEEKAHLLAEQKNEVETKNREVEQAKAALEEKAEQ 1665

Query: 245  ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  KS FLA+MSHELRTPLN +L  ++++       L+++  K Y   IH SG  L
Sbjct: 1666 LSLTSKYKSEFLANMSHELRTPLNNLLILAQMLAENAESTLSSKQVK-YAETIHSSGTDL 1724

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-- 359
            L LIN+ILDLS+IE+G+ ++   ++   ++        +  A+ K +++  ++  +L   
Sbjct: 1725 LALINDILDLSKIESGKMDVEVGSVHFSELRDLSSRTFRHVAEGKGLDLSIELADNLPSE 1784

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIK 406
            ++  D K ++QV+ NLLSNA+KFT   G V + V   +                   S+ 
Sbjct: 1785 TIITDAKRLQQVLKNLLSNALKFTEQ-GAVRLRVERATSGWSASHPVLNRVKSVIAFSVT 1843

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI + +   +  +F Q          G GLGL I++ +    GG+  ++S    G 
Sbjct: 1844 DTGIGIPQDKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELTRLLGGEIRLQSAPGAGS 1903

Query: 467  EVIAILPNTRVLNFI 481
                 LP T V    
Sbjct: 1904 TFTLYLPQTYVAQVA 1918


>gi|150009333|ref|YP_001304076.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937757|gb|ABR44454.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 942

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRAE  NLAKS FL+ MSHE+RTP+N I+G S +         N +  K+ +  +  S +
Sbjct: 547 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 603

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL   + +    +++   +   +A+ K I     +   L 
Sbjct: 604 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 663

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
             +  D   + QV+ NLLSNA+KFT   G + + V  T            + D G GIAE
Sbjct: 664 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 723

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q ++ +     G GLGL I +      GG   + S    G      LP 
Sbjct: 724 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 783

Query: 475 TRVLNF 480
            ++   
Sbjct: 784 GKIKES 789


>gi|149235444|ref|XP_001523600.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452579|gb|EDK46835.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1142

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 23/322 (7%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224
               V+        +     ++A  L + +  F  IT      +      +    E D L
Sbjct: 405 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEALGEMDAL 464

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             ++        E        R+ AE  N AKS FLA+MSHE+RTPLN I+G +++    
Sbjct: 465 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 520

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   + 
Sbjct: 521 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 580

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   GRV V+V  +
Sbjct: 581 TLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GRVSVSVKKS 639

Query: 397 SGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        + + D G GI + ++  +  +F Q   +      G GLGL I++ ++
Sbjct: 640 DKTAEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISRQLI 699

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG+  + S+   G      
Sbjct: 700 HLMGGEIWVTSEYGSGSNFNFT 721


>gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB]
 gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 794

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 9/264 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                    +  L   +E         +  AE  N+AKS FLA+MSHE+RTPLNAI G +
Sbjct: 372 NTAQELAKHRLHLEQLVEERTEELLLAKDAAENANMAKSAFLANMSHEIRTPLNAIAGMA 431

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             I    + P       E +  +  +  HLLN+IN IL+LS+IEAG++E+ ES I +  I
Sbjct: 432 HFIRRGGLSP----KQSEQLEKLEGASTHLLNIINAILELSKIEAGKFEIEESPIKVESI 487

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +   + +L  RA+ K+I++  +I+     +  D   ++Q +LN  +NAVKFT   G V +
Sbjct: 488 LGNVLSLLHDRAEAKHIKLLCEIELLPKDLLGDATRLQQALLNYTTNAVKFTET-GSVTL 546

Query: 392 TVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V               ++D G GIA   +P + ++F Q   +      G GLGL I + 
Sbjct: 547 RVHPVDENAISTVLRFEVRDTGIGIAPEVLPKLFSAFEQADNSTTRKYGGTGLGLAITKK 606

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           +    GG     S L  G      
Sbjct: 607 LAEMMGGDSGAESTLGRGSTFWFT 630


>gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
 gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
          Length = 2349

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1792 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1851

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   + P        Y+  I      LL LIN
Sbjct: 1852 KAKSIFLANISHDLRTPMTGVIGLSELLKATKLDP----KQDVYVESIRVCADTLLTLIN 1907

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK +E  + +D    +  V  D
Sbjct: 1908 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPNLLVMGD 1967

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V         + I +     D G GI+E ++  +
Sbjct: 1968 PVRLHQIFMNLLSNSYKFTPK-GSVTVQAIVEEDTPEQIRVTCKVADTGIGISEEQLVRL 2026

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2027 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2079


>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1070

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 9/272 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + + E +  +      ++ AE  N AKS FLA++SHE+RTPLN I+G  ++     +   
Sbjct: 674 EDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSEV--- 730

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++YI     S ++LL ++N++LD ++++AG+ E+ +   SL D++ + +   +  
Sbjct: 731 -PPELEDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRAL 789

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
           A +K I +       +     DE  +RQ++ NL+ NA+KFT   G V +       +G  
Sbjct: 790 AMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDT-GSVTLEAWPVGEQGDA 848

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI   ++  V  SF Q         QG GLGLPI + ++   GG   +
Sbjct: 849 TRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRLVTLMGGNISV 908

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            S   EG  +  +LP                +
Sbjct: 909 ESMEGEGTTIFFVLPLRAAPPLQQVQTSAQPE 940


>gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 765

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 143/276 (51%), Gaps = 6/276 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   ++++ +     Q +K+     +        +T   ++  N +KS FL +MSHELR
Sbjct: 344 HLAVAIYQAQLYA-QVQEQKNTFEQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELR 402

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPL  I+G S  +    +    L  +  ++Y+  I  SG+HLL++INEIL+ S +++G+Y
Sbjct: 403 TPLTCIIGLSGTLLHWSQESTTLPLDKQQKYLQTIQNSGKHLLDMINEILEYSNLQSGKY 462

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLS 377
            L+    SL  + +  I  +   A+ + I +     I+    S +AD + ++Q++ +LL+
Sbjct: 463 VLAVREFSLTKVAKNVIQRVSDEAEHRRINLELDLQINQQQDSFYADPERVQQILYHLLN 522

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT   G V + + W       + ++D G GI E +IP +  SF Q   + +    G
Sbjct: 523 NALKFTPENGSVTLRI-WRENNHVSLEVEDTGIGIQEEKIPLLFESFQQLENSRRRMYGG 581

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + ++  HGG   + S + +G   I  LP
Sbjct: 582 TGLGLALTKQLVELHGGTIEVESIINQGSTFIIRLP 617


>gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 771

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  ++     R++AEE +  K  FLA+MSHE+RTPLNAI+GFS+++  +   PL  
Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E+I  I ++   LL LIN+ILDLSRIE+G    S   + L  ++ +     QL   
Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           E  +E+  ++      + +D   + QV  N ++NAVKFTA  G + +    ++      I
Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + +   V   F +         QG GLGL I QSI+    G   + S++ 
Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 751 VGSMFTISLP 760


>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1090

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 35/297 (11%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K  +K           I E + A+    + ++ A+  N AKS FLASMSHELRTPLNA
Sbjct: 552 ISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNA 611

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILGF++V+  +      N  +++ +  I RSG+HLL LIN+IL++S+IEAGR     ++ 
Sbjct: 612 ILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSF 668

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++     ML L+AQEK +++  +  P +   +  DE  +RQV++NLL NA+KFT  
Sbjct: 669 DLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEE 728

Query: 386 GG---RVHVTVGWTSGR---------------------------GQYISIKDNGPGIAEG 415
           GG   RV   V    G                                 ++D+GPGIA  
Sbjct: 729 GGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPE 788

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E+  +  +FGQ     + A++G GLGLPI++  +   GG   + S L +G      +
Sbjct: 789 EVDQLFAAFGQTETGRQ-AQEGTGLGLPISRKFVQLMGGNISVSSILGQGSLFAFSI 844


>gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 944

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V      +V A     I    +       +    L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDVTGPIRNMVNA--VDRIRRGQLDSR----VEGHML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHL 515


>gi|3955036|emb|CAA65047.1| putative sensor kinase [Synechocystis sp. PCC 6803]
          Length = 1138

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 134/313 (42%), Gaps = 23/313 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
               A  +     I   +    +   +   ++ +   EL       ++    AE  N AK 
Sbjct: 721  VWTADEIELLEAIAEQMG-IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKG 779

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA MSHE+RTP+N ++G SE++ +  +         +Y+  I +SG+ LL +IN+ILD
Sbjct: 780  EFLAMMSHEIRTPMNGVIGMSELLIMTDLNL----QQLDYVQTIRQSGETLLTIINDILD 835

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
             S+IEA +  L   A  L  ++   + M    A+ K++E+   IDP     +  D+  +R
Sbjct: 836  FSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLR 895

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQYISIKDNGPGIA 413
            Q++ NL+ NA+KFT   G V +TV                          +++D G GI 
Sbjct: 896  QILSNLIGNALKFTEK-GEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIP 954

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  +  SF Q   +      G GLGL I+Q +    GG   + S+   G      + 
Sbjct: 955  LDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCIL 1014

Query: 474  NTRVLNFIPEDNH 486
             T     + E + 
Sbjct: 1015 TTAQAPALAEADS 1027


>gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
          Length = 909

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  ++RA
Sbjct: 227 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+  + N T ++Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  L      L   + E +++L   A EK +E+   I   +    
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             D   M+Q+I+NLL NA+KFT   G + + V   +         + I D G GI+E + 
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F Q   +I     G GLGL I Q ++   GG+    S+L  G      +
Sbjct: 462 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 14/283 (4%)

Query: 200 FTYITYHLFKSNVKIL----SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            T I   L  S  ++L        +    +  +E   +      K   E N  K++FLA+
Sbjct: 236 LTEINERLENSQEEMLKSIEQATEDMRRNMDSMEEKSAQLHIANKETSESNRLKTQFLAN 295

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLNAILG++++++ + +        + YI  I +S  +LL +I +ILD S+IE
Sbjct: 296 MSHEVRTPLNAILGYTQLLQKDKLDN----QQRLYINTIEQSTNNLLAIIGDILDFSKIE 351

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVI 372
           AG+  L +S +++ +++ +   +L          +    +        +  D   +RQ++
Sbjct: 352 AGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEVANEVPEWLIGDAIRIRQIL 411

Query: 373 LNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NL+ NA+KFT  G    +V +           + + D G GI E ++ ++  +F Q + 
Sbjct: 412 TNLIGNAIKFTHDGFVRTKVTLEQQRNGQPRLLVQVIDTGIGIPENKLNSLFKAFSQVNT 471

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I + ++   GG+  + S+   G      +
Sbjct: 472 STTRQFGGTGLGLVITKKLVEQMGGEIEVNSESGVGSNFRFRI 514


>gi|325921895|ref|ZP_08183706.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547597|gb|EGD18640.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 718

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 10/302 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +    A A        + L +   +    +      +      +      ++ AE   LA
Sbjct: 1   MGVCAAIAAYRSARAQHALAQRLEEAEVARERLQQELQRQGELEQELLRAKQAAEAATLA 60

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA+MSHE+RTPLN I+   E+I    +        ++ +     S   LL ++++I
Sbjct: 61  KGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDI 116

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LD S++EA + EL  +  +L +++   + +LQ  A+ + + I  +I+PS+   V  D   
Sbjct: 117 LDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRIGLEIEPSVRLLVRGDPIR 176

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+ NL+ NA+KFT   G V + +               I+D G GIA+ +   +  S
Sbjct: 177 LRQVLGNLIGNAIKFTER-GSVDIQLRRLGETRAQHLLRFQIRDTGIGIAQDQQARLFRS 235

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q   +      G GLGL I + I+   GG+  + S+   G      +P  +V+  + +
Sbjct: 236 FAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVIGDLQQ 295

Query: 484 DN 485
           + 
Sbjct: 296 NT 297


>gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
 gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
          Length = 2418

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1832 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1891

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1892 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1947

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK +   + +D       V  D
Sbjct: 1948 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDLLVMGD 2007

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V         + I +     D G GI+E ++  +
Sbjct: 2008 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2066

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2067 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2119


>gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 774

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 18/276 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L  A+  + + R  AE  N AKS FLA+MSHE+RTPLN I+G ++++E   +     
Sbjct: 376 IGQLVQAQEEARQARLAAEAANRAKSAFLANMSHEIRTPLNGIVGTAQLLEFTRLTG--- 432

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+ DI  S   LL+L+N++LDLS+IEAG+  L      L   +   I  L+  AQ
Sbjct: 433 -EQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGKITLESLDFRLRASIDGVIKSLKSLAQ 491

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K ++I  +I  S+   +  D+   +Q++LNLL NAVKFT  GG + V+V          
Sbjct: 492 SKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLGNAVKFTETGG-ITVSVRLKEQHNDQL 550

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KD G GI+   +  +   F Q   ++     G GLGL I + ++   GGQ    
Sbjct: 551 LLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTKKYGGTGLGLAICKRLVTMMGGQLWAE 610

Query: 460 SKLREGVEVIAILP--------NTRVLNFIPEDNHE 487
           S    G       P            L+  P    E
Sbjct: 611 SVAGGGSTFHLAAPFSLCTQQDAECPLDAPPPAATE 646


>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 878

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A  L T+L F   I   L     +I++ +   D+    L        +        +  K
Sbjct: 444 AVFLLTSLVFVFLICTLLLTIANRIITVEEIVDEKTQHLIDLNVQLKKA-------SETK 496

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLN I+G S+++E   +    NE  K Y+    ++G +LL++IN+IL
Sbjct: 497 SEFLANMSHEIRTPLNVIVGMSDLLEESPL----NEDQKHYVDISKKAGHNLLSIINDIL 552

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           D+S+IEAG   L ++ + L  +V +   M +L+A+EKN+E+   +     S+   D   +
Sbjct: 553 DISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHSIFMGDPTRI 612

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQV+ NL+SN++KFT   G + V V              + D G GI   +IP +   F 
Sbjct: 613 RQVLSNLISNSLKFT-TDGSIRVEVMKNQTEMEGNLIFHVSDTGIGIPRDKIPQLFQPFT 671

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPE 483
           Q    I     G GLGL I++ ++    G   + S+L  G        LP  R +    E
Sbjct: 672 QADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGSRFSFSLNLPWLRDVPAEGE 731

Query: 484 DNHES 488
              E 
Sbjct: 732 HTAEE 736


>gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 2374

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1883

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK +E  + +D       V  D
Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDLLVMGD 1999

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V         + I +     D G GI+E ++  +
Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 834

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 10/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+ ++      ++ AE    +KS FLA+MSHE+RTP+NA++G SE+    T    + 
Sbjct: 430 ITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMNAVIGLSELALDST----DP 485

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + ++  I+ S + L+ ++N+ILDLS+IEA +  + +   +L +++     +  L A 
Sbjct: 486 AEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQLSVEKIQFNLTELLDSIQRIFTLSAA 545

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
             +IE     D  +  +   D   +RQ++ NLL NA KFT   GRV + V      T   
Sbjct: 546 GCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGNAFKFTQK-GRVTLNVSKIENTTDST 604

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KDNG G+++G++ T+   F Q   +I     G GLGL I++++    GG   + 
Sbjct: 605 TLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGLGLTISRNLAQLMGGDIKVE 664

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S+   G      L  ++V    P+
Sbjct: 665 SQAGAGSTFSVELTFSKVQVSDPQ 688


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 10/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            ++  ++A++     ++ AE+    KS FLA+MSHE+RTP+NAI+G S +     + P   
Sbjct: 862  VSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTP--- 918

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+  I  +GQHLL +IN+ILD S+IEAG+  +  +   L  ++     +L  + +
Sbjct: 919  -RQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTR 977

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K++E+   I   +   +  D   + Q+++N  +NAVKFT   G + +            
Sbjct: 978  AKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFT-ENGEIDIIARVKERSETEV 1036

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              Y +++D G GI   +   +  SF Q   +      G GLGL I++ +    GG+  + 
Sbjct: 1037 LLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVE 1096

Query: 460  SKLREGVEVIAI 471
            S+  +G      
Sbjct: 1097 SEYGKGSTFWFT 1108


>gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 733

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 134/279 (48%), Gaps = 11/279 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++  + +
Sbjct: 325 EIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDEL 384

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   ++++  ++ SG+H++ L+NEILD S+IE G++EL  S   L  I+     + 
Sbjct: 385 TV----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIY 440

Query: 340 QLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V V +   + 
Sbjct: 441 SSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEENI 499

Query: 399 RGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             +Y   I ++D+G GI +  +  +   F Q          G GLGL I + I     G 
Sbjct: 500 GDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGA 559

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             ++S++ +G             +   ++ ++  + K Y
Sbjct: 560 VSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596


>gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 807

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 732 VRDTGMGIPRNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 788 GSCFWFTYP 796


>gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1059

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 12/294 (4%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +   I   + +      +        I+E +  ++   ++R+ AE    AKS FL  MS
Sbjct: 421 LWVLDIGKIMQRDASGAPARVTGVLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMS 480

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLNAI+G + +     + P+     ++YI  I R+ +HL+  IN +LDLS+IEAG
Sbjct: 481 HEIRTPLNAIIGMAHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAG 536

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           +  + +    L ++V + +++++ RA+EK + +   I  SL      D   + QV+ NL+
Sbjct: 537 KLSMEQVGFDLRELVDDVLLLVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLV 596

Query: 377 SNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT   G V + V     W        S+ D G GI++ +   +   F Q   +I 
Sbjct: 597 DNAIKFTEA-GHVCIGVYLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSIS 655

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
               G GLGL I++ I+    G   ++S+  +G            L  +P + +
Sbjct: 656 RRYGGSGLGLTISKKIVQLMQGDIRVKSQPGQGATFKFS--VQLSLPPLPLEEN 707


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
            29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
            [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 9/248 (3%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             RK+ E     K  F++ +SHELRTPL +I G   ++    + P ++E  +  +     S
Sbjct: 1116 ERKQIE---RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLL-PADSEQGRRLLEIATDS 1171

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             + L+ LIN+ILD+ RIE+GR ++   + +L D++   + +++  A +  +++       
Sbjct: 1172 TERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSVSHPS- 1230

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
               +W D   + Q + NLLSNA+KF+     V + V    G    +++KDNG GI   ++
Sbjct: 1231 -IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQQYGDELLVTVKDNGRGIPADKL 1288

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             ++   F Q   +      G GLGL I QSI+  HGG+    S L EG      LP   +
Sbjct: 1289 DSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSNFYFTLPILPI 1348

Query: 478  LN--FIPE 483
                 +P+
Sbjct: 1349 SPNSELPD 1356


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
          Length = 1209

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 135/257 (52%), Gaps = 12/257 (4%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +       ++ ++  +L           K AE+ N AKS FLA+MSHE+RTP+NA++G 
Sbjct: 470 ALAQAKLLEQEREIRQQLIEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGM 529

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++    +    N   +++   I  SG+ LL+LIN+ILD S+IE+G+++L      +  
Sbjct: 530 TGLLLDTHL----NTQQQQFTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQ 585

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            V EC+ ++  +A  K +++  +I+P +   +  D   +RQV++N+L+NAVKFT   G +
Sbjct: 586 CVEECLDLVAPQAFAKKLDLVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFT-TSGSI 644

Query: 390 HVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V V  T             SIKD G GI+  +   +  SF Q + +I     G GLGL 
Sbjct: 645 QVRVSATVANQQQNKYTIQFSIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLA 704

Query: 444 IAQSIMANHGGQFLIRS 460
           I + +    GGQ  + S
Sbjct: 705 ICKRLTEMMGGQIWVES 721


>gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 919

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 15/289 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              L+ Q     L + ++   +     ++RAE  + AKS FL+ +SHELRTP+NA++G  
Sbjct: 369 QARLALQESYRSLESRVKQRTTELQLAKERAEIASQAKSEFLSMISHELRTPMNAVIGAL 428

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++         +   ++ I     S  +L+ ++N+ILD+++IE+G+ +L +    L  +
Sbjct: 429 ELLS----LADKSGEERDLIETASTSANNLIYILNDILDINKIESGKMQLEQQDFHLAGV 484

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT----AIG 386
           + + I      A  + +    +    L   V  D   +RQ++ NLLSNA+KFT       
Sbjct: 485 IADLIKSFSPVASRQGLRFAVQEALELPDWVEGDIVKVRQILSNLLSNAMKFTHSTQEQT 544

Query: 387 GRVH--VTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G V   +TVG  +        ++ DNG GI +     + T F Q   +      G GLGL
Sbjct: 545 GCVSLNITVGEQNDIVTRVRFTVTDNGIGIDKATQKRLFTPFVQAQRSTTRNYGGTGLGL 604

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            I   +    GG   ++S+L +G +    LP  R  +   E   E +++
Sbjct: 605 AICGKLTNLMGGSISLKSELGQGAQFCVELPFWRAHHH--EQTQELSEH 651


>gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 633

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 12/295 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L   +  I +     +    E + A +   +TR+ AE  N AKS FLA MSHELRTP+N 
Sbjct: 223 LGDLSRHINNLAEGLNQASREQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   M     E   EY      S +HLL +IN+ILD SRIE    EL     
Sbjct: 283 VLGMLQLMETTEM----TEEQSEYAALASESTEHLLKVINDILDFSRIERAALELEHIPF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +L D++  C    Q  AQ++ + +   I        V  D   +RQ+++NL+ NA+KFT 
Sbjct: 339 NLADLINSCAQAFQHSAQQRGLALQLSIPQGMDALRVQGDPTRIRQILVNLIGNALKFT- 397

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V V   W +     +    +++D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 398 ENGSVSVEPHWQTLDHDLVWFTCTVRDSGIGISADRLELMFDAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GLPIA+++    GG    +S+   G      +P     + +P    + T  K  A
Sbjct: 458 GLPIARTLAERMGGTLRAQSEESRGSVFTLEIPLAIDQHSVPAVAAD-TDGKASA 511


>gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1967

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 166/401 (41%), Gaps = 25/401 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            R  +++  +  G    ++ L    T++  ++   +  T  I + ++ ++  M   A+   
Sbjct: 1119 RNIVVLPVLFEGEVKAVIELASFHTFSEVHMGFLEQLTESIGIVLNTIAANMRTEALLKQ 1178

Query: 167  FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L    + +   +      A  L  +          L  +N ++        + 
Sbjct: 1179 SQALTDELRKQQEELTETNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAKLLSEQ 1238

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ +   EE        +  KS FLA+MSHELRTPLN++L  S+ +   
Sbjct: 1239 KTEVERKNGEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDN 1298

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              G L +    E+   IH SG  LL LIN+ILDLS+IE+G   +    +   D+      
Sbjct: 1299 VDGNLTS-RQVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDR 1357

Query: 338  MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  A +K +E    +  SL   +  D K ++QV+ NLLSNA KFT   G V + +G  
Sbjct: 1358 TFRQVADKKGLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFT-ESGSVSLHIGLA 1416

Query: 397  SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G                  ++ D G GI + +   +  +F Q   +      G GLGL 
Sbjct: 1417 KGGWSPDHAMLSSAPSVVAFTVADTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1476

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            I++ I    GG+  + S +  G      LP   +    PE+
Sbjct: 1477 ISREIARLLGGEIRLESDVGRGSAFTLYLPLAFMAERPPEE 1517


>gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 720

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 136/271 (50%), Gaps = 10/271 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E  +A+      +  AE  N AKS FLA+MSHE+RTPL  ILGF+E+I  + +   + 
Sbjct: 325 VTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGVILGFAEIIGTQDL---DE 381

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y   IHR+G  L  +I++ILDLS+IEAG++E+ +S + L  +++E + M   +A 
Sbjct: 382 SERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPVKLKKLLQEVLTMFFDQAS 441

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
            KNI +  ++       + +D   +RQV++NL+ NA+KFT   G V V+          +
Sbjct: 442 RKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMK-GSVKVSCRAEQVTATRK 500

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-I 458
               SI+D G G+ + +   +   F Q          G GLGL +++++    GG    +
Sbjct: 501 KIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLGLALSRNLARALGGDVSIV 560

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           R + R+G           V         ES 
Sbjct: 561 RCEPRQGCTFEFSFQAEDVSELSVAGQAESA 591


>gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 2408

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1883

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK +E  + +D       V  D
Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDLLVMGD 1999

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V         + I +     D G GI+E ++  +
Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria
           maculans]
          Length = 1313

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E ++ L++     A+E +  KS  LA+ SHELRTP+  ++G SE++         NE  
Sbjct: 705 KENSRLLANTA--AAKEASRMKSNLLANTSHELRTPIAGVIGMSELL----FDMDLNEEQ 758

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           KE   +IHRS   LL +IN+ILD S++E+GR ++ E   SL  ++R+   M+   AQ K 
Sbjct: 759 KECTENIHRSASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKG 818

Query: 348 IEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           +     I   +     V  D   +RQ+++N+L+N++KFT++G  ++ V +   +      
Sbjct: 819 LAYQSFIQDEVEMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTV 878

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI E     +   F Q   +      G GLGL I+++++    GQ  + SK
Sbjct: 879 NFTVSDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSK 938

Query: 462 LREGVEVIAILPNTRVL---NFIPEDNHES 488
           L +G      +P ++V    +  P  N ES
Sbjct: 939 LGQGTTATFWIPFSKVPCANDGSPLVNLES 968


>gi|3243089|gb|AAC23929.1| histidine kinase [Candida albicans]
          Length = 1081

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 933

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL + + + +++L   A EK +E+   I   +    
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + +  +D G GIAE +  
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLEVQIRDTGIGIAELQQS 462

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 520


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 15/312 (4%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            +VV L  +  +   +L    +G           ++    +  + +         L+    
Sbjct: 775  MVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMELLSQLANQIGIALTQA-----ALLERER 829

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  ++ RK AE+   AKS FLA+MSHE+RTP+NA+LG + ++    +    N   ++
Sbjct: 830  KRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPL----NAEQRD 885

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            ++  I  SG  LL LIN+ILD S++EAG  EL      L   + E   +    A  K +E
Sbjct: 886  FVETIRISGDALLTLINDILDFSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLE 945

Query: 350  IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404
            +   + P +   +  D   +RQ++ NL+SNA+KFT   G V +               +S
Sbjct: 946  LAVLMPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQ-GEVVIQAEVLQETATHAHLKLS 1004

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            ++D G GI       +   F Q   +      G GLGL I + +    GG   ++S+  +
Sbjct: 1005 VRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQ 1064

Query: 465  GVEVIAILPNTR 476
            G      L   R
Sbjct: 1065 GSTFSVELTLER 1076


>gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 731

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 140/321 (43%), Gaps = 16/321 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL- 215
           + L   V     P+++A      M ++        +++  +     +   +    +K+  
Sbjct: 266 YDLVLNVEAVIVPIMLACVMLGYMLINRF------LISPIIVIARRVDETMEGGEIKVRY 319

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E   LI          +E + +A+    AKS FLA +SHE+RTP+N +LG +++++
Sbjct: 320 QSEDEIKYLIDSFNQKTVFLEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQ 379

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              M     +  ++Y+  +  SG+H++ L+NEILD S++E G  EL      L  ++   
Sbjct: 380 KTEM----TDEQRKYLKTLIDSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSI 435

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     D P       D+  +RQ++ NLL+NAVKFT+  G V V+  
Sbjct: 436 NSVYNTLCCEKGLQFKVYSDVPIERWYRFDKARLRQILFNLLNNAVKFTSR-GYVEVSFT 494

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      + ++D G GI +     V   F Q   +      G GLGL I   +   
Sbjct: 495 EEIIDDQTYLRLRVRDTGIGIPKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCEL 554

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG+  + S++  G       
Sbjct: 555 MGGKIQLTSEVGIGSCFEISF 575


>gi|207742567|ref|YP_002258959.1| virulence regulator vsrb protein [Ralstonia solanacearum IPO1609]
 gi|206593960|emb|CAQ60887.1| virulence regulator vsrb protein [Ralstonia solanacearum IPO1609]
          Length = 525

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69
           +   + P  + LGL   + ++ D     L          I    VL V  +  ++     
Sbjct: 29  LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 88

Query: 70  PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     G+ W     
Sbjct: 89  LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++A             
Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L   ++F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 207 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +ET    +  +    Q +  L 
Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 315

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 492

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 493 AQPRSEQK 500


>gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 682

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 148/273 (54%), Gaps = 9/273 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
           + I Y   ++ + I+         I + +  +     +R+ AE  N +K+ FLASMSH+L
Sbjct: 403 SLIHYRGNRAVMYIMRD-------ITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDL 455

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+G+S+++  E++G L NE   +Y  +I  SG+ LLN+IN+IL++S+IEAG+ +
Sbjct: 456 RTPLNAIIGYSDLLLTESVGDL-NEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQ 514

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L  S   + +I++E   +++ + Q    E+   I+  +  ++AD   +  ++ NL+ NA+
Sbjct: 515 LRPSENDIQEILKEVNELVKTKVQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAI 574

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K +    ++ + +  T  +   I +K+ G GI +     + T F Q    I    +G GL
Sbjct: 575 KHSPKNEKIFINIT-TKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGL 633

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I +  +  H G+  I S L E    I  +P
Sbjct: 634 GLAIVKHYVHLHNGKIWIESVLGEETSFIFTIP 666


>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 929

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 226 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 285

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGLIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 341

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL + + + +++L   A EK +E+   I   +    
Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418
             D   ++Q+I NLL NA+KFT  G   + V           + +  +D G GIAE +  
Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDTGIGIAELQQS 461

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
            +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 462 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 519


>gi|189909957|ref|YP_001961512.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774633|gb|ABZ92934.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 912

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 228 LEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            E +     E R    E+ N  KS FLA+MSHE+RTP+N +LG   ++E   +       
Sbjct: 511 KEKSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNVDI----E 566

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+Y+ +  +S   LL +IN+ILD+S++E  + E+  +  ++  + R+  ++ Q    +K
Sbjct: 567 QKDYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDK 626

Query: 347 NIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           N+++      + +   +  DE  +RQV+ NL+SNA+KFT   G + + V           
Sbjct: 627 NLKLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPS-GIITLAVKLDPSRNFIEF 685

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+E  I  +   F Q   A     +G GLGL I++ ++   GG+  + S L 
Sbjct: 686 CVHDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILN 745

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
            G      +P  +V   IPE +
Sbjct: 746 IGSTFKFTIPFHQV--AIPEQS 765


>gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
          Length = 1021

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 130/265 (49%), Gaps = 10/265 (3%)

Query: 224  LIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            L+    +A    +  R  AE    N AK  FLA MSHELRTPL A+LG+++++      P
Sbjct: 756  LVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDP 815

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
               E     +  I R+ + L  LI ++LD+SRI  G+  L + A+ L  +V+  + +++ 
Sbjct: 816  AIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRP 872

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            RA++K + +  +       V  D   ++QV  NLL NAVKFT  GGRV V V        
Sbjct: 873  RAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEW 931

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + IKD+G GI    +P +   F Q   +      G+GLGL I + ++  HGG+    S 
Sbjct: 932  RVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESA 991

Query: 462  -LREGVEVIAILPNTRVLNFIPEDN 485
             L  G      LP   V   +PE  
Sbjct: 992  GLGHGSTFTVRLP---VPALLPEPE 1013


>gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
 gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
          Length = 810

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 143/285 (50%), Gaps = 17/285 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +   +  +  LIA+ E  K         AE+ N AKS FL+ MSHE+RTP+NAI+G + 
Sbjct: 263 DVTELREMQRKLIAQTEALKDALS----VAEQANRAKSDFLSRMSHEIRTPMNAIIGMTT 318

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +         + +  ++ +  I  S +HL+ LIN++LD+S+I+AG+ ++S    +L  IV
Sbjct: 319 IAAAYI---EDRKRVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLETIV 375

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                ++  +A++K +     +   +++V   D   + Q++LNLLSNAVKFT  GG V +
Sbjct: 376 ESITSIIYPQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGTVRL 435

Query: 392 TVG--WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +   W       +S  + D G G+++  +  +   F Q  +       G GLG+PI ++
Sbjct: 436 RIRQMWRRAGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYGGTGLGMPITKN 495

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           +    GG   ++SK  +G      L        +PE  +E  + K
Sbjct: 496 LATLMGGTISVKSKPDQGTTFTVEL-----DFDLPEQENEVPEQK 535


>gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 864

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 147/259 (56%), Gaps = 7/259 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + L    ++ +L  + +      +  +  AE+ N AKS FLASMSHELRTPLNAILG+ +
Sbjct: 371 QQLGVAVQQGELFKQTQNQAEELELAKIAAEKANHAKSEFLASMSHELRTPLNAILGYVQ 430

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++         +  ++  +  I+ SG+HLL LIN++L++S+IEAG+  L E+   L  ++
Sbjct: 431 LMLR---STSLSSDHRNNLQTINDSGEHLLGLINDVLEMSKIEAGQIVLKETDFDLYHLL 487

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E   +LQL+A  K + +    D ++   +  DEK +RQV++N++ NA+KFT   GRV V
Sbjct: 488 DELETLLQLKATIKQLSLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEK-GRVTV 546

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V W  G   + +++D G GI + E+  + + F Q    + S  +G GLGLPI+   +  
Sbjct: 547 KV-WCEGHRLFFAVEDTGQGIEKEELEQLFSPFVQAKAGVNSG-EGTGLGLPISSKFINL 604

Query: 452 HGGQFLIRSKLREGVEVIA 470
            GG+ ++ S + EG     
Sbjct: 605 MGGKIMVNSVVTEGTTFTF 623


>gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 1462

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +   D  R++AE    AKS+FLA++SHE+RTP++ ILG  E+++   +    +
Sbjct: 698 ITLLKKQQQALDNARQKAERATAAKSQFLATISHEVRTPISGILGLLELMQEHQL----S 753

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E      G +++S ++LL+++N++LD S+IEAG+ +L+ + I L  ++   +    + AQ
Sbjct: 754 EELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQ 813

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K +      DP+L+  ++AD+  + Q++ N L+NA+KFT  G     + V       + 
Sbjct: 814 QKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQK 873

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D G GI +    ++   F Q          G GLGL IA  ++    G   + S
Sbjct: 874 VSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSS 933

Query: 461 KLREGV--EVIAILP 473
           +  +G    V   LP
Sbjct: 934 EEGKGSHFTVTVTLP 948


>gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
 gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
          Length = 1303

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 100/392 (25%), Positives = 170/392 (43%), Gaps = 41/392 (10%)

Query: 104  YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
                  +++  +  G     + L     +T  +L  +   T  + ++I+A++      A+
Sbjct: 743  APATHVIVLPILFEGQVQGAIELASFSGFTDTHLAFFDQFTENLGVTINAINANSRTEAL 802

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                                     LA  L             L +SN ++    A    
Sbjct: 803  LA-------------------ESQRLAQQLQERSDELQRQQAELRRSNAELEEKAALLAK 843

Query: 224  LIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                +E+     ++ R+  EE        +  KS FLA+MSHELRTPLN++L  ++++  
Sbjct: 844  QNRAIEIQNFQIEQARRTLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLVLAKLLSE 903

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
               G L      E+   IH SG  LL LIN+ILDLS++EAG+ E+    ++   +V    
Sbjct: 904  NPEGNLT-PKQVEFAKTIHDSGTDLLQLINDILDLSKVEAGKMEVHPQPLAFTKLVDYVD 962

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
               +  A +K ++   ++ P +  V + DE+ ++QV+ NLLSNAVKFT+  GRV +T+  
Sbjct: 963  ATFRPLAVDKGLDFAVEVSPQVPEVLFTDEQRLQQVLRNLLSNAVKFTSE-GRVRLTIAP 1021

Query: 396  TSGRGQY------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G                  + D G GI+E ++  +  +F Q          G GLGL 
Sbjct: 1022 AEGVEFTAPALREAPLVIGFEVSDTGIGISEDKLQVIFEAFQQADGTTSRRYGGTGLGLS 1081

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I+++I    GG+   +S++ +G +    LP  
Sbjct: 1082 ISRNIAHLLGGEIHAQSRVGKGSKFTLYLPVQ 1113


>gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
 gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
          Length = 763

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 19/341 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
            +   +   L++  LS  ML     L+  P+              +   ++  L+     
Sbjct: 143 VQFTIMWTVLAVVGLSAVMLVLLNMLALQPL------------KTIHDRMSDALSGVQGQ 190

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              + ++  +    +       +D   E +  ++  +   + A+  N AKS FLA+MSHE
Sbjct: 191 VRKLPWYASREFWALNFSVGVLEDTFVERDEREAALERACEDADIANQAKSDFLANMSHE 250

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N ++G +E+I    +    +E  + Y   I +SG  LL +IN+IL+ S+IEAG+ 
Sbjct: 251 IRTPMNGVIGMAELIMETDL----DEDQQIYAETISKSGTALLTIINDILNFSKIEAGKV 306

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
           EL+ +  +L+  + + + +L  RA  K +EI  + DP+L   +  D   +RQVI N++ N
Sbjct: 307 ELNLAPFNLLTAIEDVVTLLSPRANAKGVEIILRYDPNLPEFFEGDVGRVRQVITNIIGN 366

Query: 379 AVKFTAIG-GRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           AVKFT +G   V V+ G  S      I + D G GI    +  V ++F Q       + +
Sbjct: 367 AVKFTDVGYVHVDVSGGKNSENYSLTIKVADTGIGIPANRLEAVFSAFEQVDSGATRSFE 426

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           G GLGL I+  ++A  GG+  + SK  EG      LP  R 
Sbjct: 427 GTGLGLAISARLLALMGGEVAVASKAGEGSIFTVQLPLPRA 467


>gi|332531837|ref|ZP_08407722.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038813|gb|EGI75255.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1046

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 10/307 (3%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           + L  + + S   + IS      T ++        L+  N +      E   L +++E  
Sbjct: 290 LTLLLKDMNSEKPVTISNTSQNQTEIASVIKAANALYLKNKQTKELLNETRVLNSQMEAM 349

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +      ++ ++ N  K  F+A+MSHELRTP+N ILG  ++++   +        K Y 
Sbjct: 350 NADLTSAMEQTDKANKTKIDFVANMSHELRTPMNGILGMLQLLQSSEL----PSRQKHYA 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                S Q+LL ++N ILD S++E+ + +L +   +L  IV     +    A++K + + 
Sbjct: 406 DKAFSSAQNLLQILNNILDFSKLESEKVQLEQIPFTLHTIVSNVQNLFSTNAKQKGLLLN 465

Query: 352 QK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
                 +   +  D   + Q+I N + NA+KFT   G + + +  TS          SIK
Sbjct: 466 FILHVDAGLELIGDPMHLSQIINNCVGNAIKFT-EHGEISLIIEATSQHEKTINLRFSIK 524

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+ E +   +  SF QG  +      G GLGL I++ +    GG   +RS + +G 
Sbjct: 525 DTGIGMTEEQSKIIFQSFSQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQVRSTINQGS 584

Query: 467 EVIAILP 473
           E    LP
Sbjct: 585 EFFFTLP 591


>gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 784

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               +        +    +   E+E         R RA+E + AKS FLA+MSHE+RTP+
Sbjct: 266 RGSNRDITDRKVAENRLQEFAVEVETQNLELARARNRAQEASKAKSTFLANMSHEIRTPM 325

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGF++V+E     P        ++  I RSG HLL LIN+ILD+S+IEAG+ + S  
Sbjct: 326 NAILGFAQVLEQ---DPDLTPRQAGHLKTITRSGNHLLRLINDILDMSKIEAGQVQSSPE 382

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              L+D++ +  +M   RA+ K ++   + D  L  ++ AD+  +RQ+++NLL NAVKFT
Sbjct: 383 DFGLVDMLEDMGLMFSSRAEAKGLQFILERDRHLPGNIRADQGMLRQIMVNLLGNAVKFT 442

Query: 384 AIGGRV-HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           + GG    V        G          I ++D+GPGI E +   +   F Q    I   
Sbjct: 443 SSGGVACRVRTEPAQDTGEKDDSRLRLTIEVEDSGPGIQEIDQQKLFEPFQQAEEGI--K 500

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E G GLGL I++S     GG   + S    G      +
Sbjct: 501 EGGTGLGLAISRSFARLMGGDIEVSSTKDRGSLFRVHI 538


>gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
 gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
          Length = 742

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 10/338 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            ++   + +S   +   +    I  ++ L+  ++ +       F         ++ ++  
Sbjct: 166 LVVFTILLVSITCIYGLIKRSIIARLNDLNRHISCIATGDYDTFINNNRITNNTDDEMSD 225

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A    L  +L+   +   + +  A + N AKS FLA+MSHE+RTPLN I+G +E+++ 
Sbjct: 226 SFAHLAVLQTQLKQNIATITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKD 285

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P+     K+Y+  I  S Q LL LIN++LDLS+IE+G   +S    ++ +++ +  
Sbjct: 286 SPLSPI----QKDYLMTIDSSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTA 341

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
            ++ ++AQEKNIE+  +IDP L   V  DE  +RQV++NL SNAVKFTA G   + +   
Sbjct: 342 SLIAVKAQEKNIELDIQIDPELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSK 401

Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S+KD G GI  G+   +  +F Q          G GLGL I+  I++  
Sbjct: 402 VVDADHIALSFSVKDTGIGIESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLM 461

Query: 453 GGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHES 488
           GG   I S   +G +    +     ++    P   H++
Sbjct: 462 GGYIAITSIKGQGSDFHFTITVGVEKIQPKQPVSPHQA 499


>gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01]
 gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01]
          Length = 987

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 22/370 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L+ A    +E        RK+AE+ 
Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GIA+    T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQRTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q    +     G GLGL I++ I+   GG   + S+   G      +P        P 
Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLE---ESEPI 698

Query: 484 DNHESTQYKC 493
           +       +C
Sbjct: 699 ETGTVATARC 708


>gi|296422839|ref|XP_002840966.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637193|emb|CAZ85157.1| unnamed protein product [Tuber melanosporum]
          Length = 1164

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 677 EMDALKTKINQMVFNLRDSIQKNTAARETAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 736

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILD+S+IEA R  + E   SL   V
Sbjct: 737 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDISKIEANRMVMEEIPFSLRGTV 792

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A E+ +++   +D  +   V  D   +RQVILNL+ NA+KFT   G V +
Sbjct: 793 FNALKTLAVKANERFLDLVYCVDNVVPDHVVGDSFRLRQVILNLVGNAIKFT-ESGEVKL 851

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                 S+ D G GI   ++  +  +F Q   +      G GLGL I
Sbjct: 852 TIRQHDQSRCSDKEYCFEFSVSDTGIGIQSDKLDLIFDTFCQADGSTTRKFGGTGLGLSI 911

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG   ++S+  +G      
Sbjct: 912 SKKLVNLMGGDVWVKSEYGQGSTFYFT 938


>gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
 gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
          Length = 2406

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E        E+  
Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1883

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   I+L   + E +  L+   +EK +   + +D       V  D
Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDLLVMGD 1999

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V         + I +     D G GI+E ++  +
Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                    +  L   ++   +  +  R  A+  + AKS FLA+MSHE+RTP+NA++G  
Sbjct: 554 QAEEELNRYRLHLEELVKTRTAELEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMI 613

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +     M P      ++Y+     +   LL +I++ILD S++EAG+ EL +    L ++
Sbjct: 614 HLTLKTEMSP----KQRDYLRKAGFAADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEV 669

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     ++ ++A EK +E   KI P +   +  D   + Q+++NL +NAVKFT   G + 
Sbjct: 670 LDTVTSIVGIKAHEKGLEFLLKIAPEVPAQLIGDPLRLGQILINLCNNAVKFTGQ-GEIF 728

Query: 391 V-----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           V          +      S++DNG G+   ++  + T F Q   +      G GLGL I+
Sbjct: 729 VFIEQLDCRENNRVMLRFSVRDNGIGMTPEQLDKLFTPFTQADASSTRRFGGTGLGLAIS 788

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+    S   +G      
Sbjct: 789 KQLVLLMGGEIGAESIPDKGSVFFFT 814


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 2/257 (0%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +   L  EL  AKS  + + +R +  +  K  F   +SHELRTPL  I G++E+++  T
Sbjct: 278 VDNAMLFDELSQAKSELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGT 337

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +GP+N+E  ++ +  I  S   L  ++  + DLS + + +Y   +  +SL +++ E +  
Sbjct: 338 LGPVNDE-QRDRLSRIDASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRG 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +   A  K ++I   +  +L  + AD   ++QV+LN+L+NA+K+T  GG++ ++V     
Sbjct: 397 IDFLADLKKLKITLDVPLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISV-RDEC 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I+++D G GI + +I  + + F      +    +G GLGL I++ I+ +HGG+   
Sbjct: 456 DHLLIAVRDTGIGIPKEDIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWA 515

Query: 459 RSKLREGVEVIAILPNT 475
            S+  +G      LP  
Sbjct: 516 DSEPGKGSTFFISLPKQ 532


>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 896

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 19/309 (6%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
           Q ++        LA ++     +   I          ++S  A    +  ++        
Sbjct: 464 QPVLKSSWFIYWLAQIVGMLFVWLLIIF---------LISVTATNIRIREQVAKQTLTLR 514

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + +++A+E +  KS+FLA+MSHE+RTP+N I G   +   +     + +  K YI     
Sbjct: 515 QEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQ----QDWQQAKGYIEQADG 570

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +   LL ++N++LD S++EAG+ EL +  ++L  +  + + ++Q   + K++ +  + D 
Sbjct: 571 ALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEYDS 630

Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
               +   D   ++Q++LNLL+NAVKFTA  G + + + W S +  Y S+ D G GI+  
Sbjct: 631 DAHLILNTDPIRLKQILLNLLNNAVKFTAK-GCITLKI-WQSSKMTYFSVNDTGIGISSA 688

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F Q   +      G GLGL I + ++   GG   ++S    G      LP  
Sbjct: 689 AQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP-- 746

Query: 476 RVLNFIPED 484
            V + +P+ 
Sbjct: 747 -VHSSLPKA 754


>gi|300864283|ref|ZP_07109163.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337748|emb|CBN54309.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 942

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 176/376 (46%), Gaps = 29/376 (7%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           GL W ++  V    +  +  T  ++  LL   +++  + F +  A +++   + ++ +++
Sbjct: 333 GLDWLIVVAVPETDFMEQINTNTQTTILLCLGALTLATIFGILTARWITNPILHLSAASR 392

Query: 178 AIMSMHVLDISLAGMLATALSF---FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           AI S  + +      +         F  +   L +S   +    +E   L   +E   + 
Sbjct: 393 AIASGDLDNNVEIKGIKELEVLGQSFNLMAQQLRESFKALEKTNSE---LEIRVEERTAQ 449

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E +K A+  N AK+ FLA+MSHELRTPLN ILG++++++             E I  +
Sbjct: 450 LTEAKKNADAANQAKTEFLANMSHELRTPLNGILGYAQILQRSKTMA---PKELEGIDIM 506

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           H+ G HLL LIN+ILDL++IEA + EL          ++    + ++RA++K+I    + 
Sbjct: 507 HQCGSHLLTLINDILDLAKIEAQKLELYPKDFHFPSFLQGVAEISRIRAEQKSITFVYQP 566

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------------- 398
              L++ + ADEK +RQV+LNLL NA+KFT   G V   V +                  
Sbjct: 567 SSELATGIHADEKRLRQVLLNLLGNAIKFTDS-GAVTFKVEYLEVVTNEGVQNNKQKPLS 625

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   I+D G G+   ++  +   F Q     K   +G GLGL I+Q I+   G + 
Sbjct: 626 RIHKIRFQIEDTGVGMTPDQLDKIFLPFEQVGN-TKRQAEGTGLGLAISQKILQMMGSKI 684

Query: 457 LIRSKLREGVEVIAIL 472
            ++S+L  G      L
Sbjct: 685 QVKSQLGAGSVFWLDL 700


>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 931

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T  +Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           N+IN++LD S++EAG+  L +   SL + + + +++L   A EK +E+   I   +    
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEI 417
             D   ++Q+I NLL NA+KFT   G + + V             + I+D G GIAE + 
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQ-GNIDIRVEKRRQELHQVQLEVQIRDTGIGIAELQQ 461

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474
             +  +F Q   +I     G GLGL I Q ++   GG    +S+L +G        LP 
Sbjct: 462 SQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 520


>gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
 gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
          Length = 593

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 8/268 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V ++S    + D+   + V + +++E R      +  +  F+A++SHELRTP+  + 
Sbjct: 330 RTWVLLMSPLYNQQDVRGAVAVLRDMTEERR-----LDKLRKDFIANVSHELRTPIAMLQ 384

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I  +  G  + E  KE    I+     +  L+N++LDL+R+EAG   L+  +   
Sbjct: 385 GYSEAIVDDIAG--SEEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDT 442

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++  +        A+EK +++   I         D   + QV  NL+ NA++ T  GG 
Sbjct: 443 EELTEKIYRKFLGIAKEKQVDLTYDIQVDEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGE 502

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           VH +V         + +KD+G GI E ++P +   F +   A      G GLGL I ++I
Sbjct: 503 VHFSVQSVESG-LKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNI 561

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  H G     SK   G      +P  +
Sbjct: 562 VEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 850

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 143/335 (42%), Gaps = 13/335 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVAL-----STQAIMSMHVLDISLAGMLATALSFF 200
             A +++     ++P A   S    VVA         A +         A  L       
Sbjct: 107 TFAWALNRNQAILVPLADDRSLLLHVVATRSRIRGMFAGILPGSSHSPDAATLNAVSVIM 166

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
               + L  + +  +  +     L   ++         R++AE  + AKS FLA+MSHE+
Sbjct: 167 HTCAHSLESTELYSM-VRDTLASLEQRVQERTRDLAAAREQAESASRAKSDFLANMSHEI 225

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN I+G ++++     G LN     +Y+G I  S   L+ +I +ILD S+IEAG+ E
Sbjct: 226 RTPLNGIMGMTDLLL---GGGLNQTQQHQYLGAIKGSADCLMGVIGDILDFSKIEAGKVE 282

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L     SL   V + +  L  RA EK +E+       +   +  D   +RQV++NL+ NA
Sbjct: 283 LDPVPFSLRTFVGQAVRSLSARAAEKGVELVCDPREDVIDPLIGDCGKLRQVLVNLVGNA 342

Query: 380 VKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KF+  G  V           +     S+ D G GIA   +  +   F Q   +      
Sbjct: 343 IKFSDGGEVVVAVETAAVEGNEVLLRFSVSDQGCGIAPEALDRIFNVFEQADSSTTKRFG 402

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I++ I+   GG   + S   EG      
Sbjct: 403 GTGLGLAISRRIVQLMGGDIRVESAPGEGSTFYFT 437


>gi|323495155|ref|ZP_08100240.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323310595|gb|EGA63774.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 810

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 10/308 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            V+V +    +M  + L          A++    ++      ++   +   E   LI   
Sbjct: 274 AVIVPIMLACVMMGYFLINRFLIAPIIAIARSADMSKQGGSIDI-RYNSHDEIKYLIDSF 332

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  +  + +A+    AKS FLA++SHE+RTP+N +LG +++++   +    NE  +
Sbjct: 333 NQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILQRTDL----NEEQR 388

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  ++ SG+H++ L+NEILD S++E G  EL  +   L  I+     +      EK +
Sbjct: 389 KHLKTLYESGEHMMTLLNEILDFSKVEQGHLELEYTPFPLESIIGSVNSVYYTLCAEKGL 448

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404
           +     + P+      D+  +RQ++ NLL+NAVKFT+  G V V        G+    I 
Sbjct: 449 QFKVYSEVPTTRWYRGDKARLRQILFNLLNNAVKFTSR-GYVEVYFKEQQRHGRNYLLIR 507

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GIA+     V   F Q   +      G GLGL I + +     G+  + S+L  
Sbjct: 508 VRDTGIGIAKDAQQKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMEGEVKLASELGI 567

Query: 465 GVEVIAIL 472
           G      L
Sbjct: 568 GSSFEVAL 575


>gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 810

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++  +  +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  +V   F +      +  QG GLGL I 
Sbjct: 723 -GCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 778 KSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 28/382 (7%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  +L    A G    +L L          + + + A   I  ++ +         +   
Sbjct: 317 RHLVLAPARADGAVNAVLELGFLHAPDERLMALLEEAGPAIGTALRSARYRAQLQNMLEE 376

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                  L  Q            +  L  +          L +S  ++   QAE +   +
Sbjct: 377 TQRQAEELQVQ------------SEELRVSNEELEEQGRALKESQTRLEQQQAELEQTNS 424

Query: 227 ELEVAKSLSDETR--------------KRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +LE    L +  R              +  E+ +  KS FLA+MSHELRTPLN++L  S+
Sbjct: 425 QLEEQAQLLETQRDDLERGASALTLKARELEQASQYKSDFLANMSHELRTPLNSLLILSK 484

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++     G L+ E    Y   I  SG  LL LIN+ILDLS+IEAG  +    A+S+  + 
Sbjct: 485 LLADNPEGTLS-EDQVNYARTIQSSGNDLLALINDILDLSKIEAGHIQARPEAVSMQRLT 543

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            +   + Q  A ++ +    ++D     +  D + + Q++ NLLSNA KFT   G+V ++
Sbjct: 544 EDVRQLFQPVADDRGLAFDIELDAGADLMETDRQRLEQILKNLLSNAFKFT-ESGKVKLS 602

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G     ++ D G GI+  +   V  +F Q    I     G GLGL I++ +    
Sbjct: 603 ISAQPGDRIAFAVSDTGIGISPEQQKGVFDAFQQADGTISRRYGGTGLGLSISRELARLL 662

Query: 453 GGQFLIRSKLREGVEVIAILPN 474
           GG+  + S+L EG      LP 
Sbjct: 663 GGRIRLESRLGEGSVFTLSLPR 684


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 143/306 (46%), Gaps = 6/306 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKS 250
           +     + T I     +    I + Q       AE E  +     ++     +  +  K 
Sbjct: 259 VIPLEVWATPIYNEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQLKD 318

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+ SHELRTPLN I+G +E +     G L+       +  +  SG+ L +LIN+ILD
Sbjct: 319 EFLANTSHELRTPLNGIIGITESLIDGAAGSLS-PVQIANLAMVVSSGKRLNSLINDILD 377

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            ++++    EL   ++    I    + + +   Q K++E+  +I      +  DE  ++Q
Sbjct: 378 FAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNEIPADFPGIDGDENRLQQ 437

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NL+ NA+KFT   G + V+          +++ D G GI+  +   +  SF Q + +
Sbjct: 438 IMYNLVGNAIKFT-ESGSITVSATQQQ-NMAEVTVADTGIGISPDKFEDIFKSFEQLNAS 495

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489
           +    +G GLGL I + ++  HGG+  + S++ +G   I  LP + + +    E   + T
Sbjct: 496 VSYPSRGTGLGLSITKQLIELHGGRIRVESEVGQGSRFIFTLPLSFQPIASSSEYRTDIT 555

Query: 490 QYKCYA 495
           + + Y+
Sbjct: 556 KVRDYS 561


>gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1865

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 11/235 (4%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NAILGFS++++    G +++   + Y+  I  SG+ LL LI
Sbjct: 1380 NRAKSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQPRAYLNSIAASGRTLLALI 1435

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
            N+ILDLS+IEAG+ +L    + +  +VRE   +L  +A +K++ +  +ID ++ + +  D
Sbjct: 1436 NDILDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKSLSLLVEIDENVPTAILFD 1495

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIP 418
               +RQ++ N + NA+KFT  G  ++ V                I+I D G GI   +  
Sbjct: 1496 PIRLRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQIEITIADTGIGICLEQQH 1555

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            ++  +F Q          G GLGL I + +    GG   + S+L +G     I P
Sbjct: 1556 SIFEAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLESELGKGSAFTFIFP 1610


>gi|3850150|emb|CAA21950.1| histidine kinase [Candida albicans]
 gi|238883421|gb|EEQ47059.1| hypothetical protein CAWG_05614 [Candida albicans WO-1]
          Length = 1081

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 896

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   ++S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|77022892|ref|XP_888890.1| hypothetical protein CaO19_5181 [Candida albicans SC5314]
 gi|76573703|dbj|BAE44787.1| hypothetical protein [Candida albicans]
          Length = 1081

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
 gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
          Length = 937

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    L+  + G     L
Sbjct: 193 VFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLNSRVEG---HML 246

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 247 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 306

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 307 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 362

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E +I+L   A EK +E+   ++  +   V  D 
Sbjct: 363 DVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQVVGDA 422

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 423 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 482

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      +
Sbjct: 483 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFYI 532


>gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
 gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
          Length = 736

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 175/456 (38%), Gaps = 36/456 (7%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92
           ++  +      ++      + +  LL   +G       +  + ++      AA L L  +
Sbjct: 24  YEVTMKRRF-RTVAVTCNAVVVLGLLWILLGVSINAPSMVIISAVAIAGSIAARLLLKTE 82

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                  +     W                 +  + P ++   +  +             
Sbjct: 83  YKLLARLLWYFTGW-----------AAVIGSVFTMPPDSYIELFFVVLLG-------GPF 124

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
              +     A+ ++   +            H         L       +Y++  +F +  
Sbjct: 125 MTFSMRREKAMIIALLGIAFGSWVLFRFMGHDF---FGPPLVEVAVPVSYLSGGVFVTVF 181

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            IL  Q          E          ++  + N AKS FLA+MSHE+RTP+N +LG  E
Sbjct: 182 AILVVQM--MAFGQLAESYSDDLLRAHQKESKANRAKSEFLAAMSHEIRTPMNGVLGMVE 239

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+E   + P      +  +  I  S   LL +I++ILD+SRIEAG+ EL E+ + L+ ++
Sbjct: 240 VLEKTDLAP----EQRRILHTIQESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLI 295

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA-----IG 386
                 L+  A +  +++   +   L  +   D   MRQ++LNL+ NA+KF+        
Sbjct: 296 EGATATLRPHANQMGVQLSLSVQADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEP 355

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G+V + V           I+DNG GI      T+ T F + +   K   +G GLGL I Q
Sbjct: 356 GQVKLRVEIREAGWIDFVIEDNGIGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQ 415

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +++  GG   + S L EG      LP   V    P
Sbjct: 416 QLVSKMGGAVKVDSTLGEGSVFTVRLPL--VEPSGP 449


>gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 857

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 12/310 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             ++    T  + +  V       +L   +           +S +      AE    IA 
Sbjct: 275 LTIIDGELTNVLFNGSVYKDEKGNVLGAVVVARDITAQKRIESELIEAKVFAELAKGIA- 333

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E A+S ++   + A +   AK +FL++MSHE+RTP+NAI+GF++V+    +    +   
Sbjct: 334 -ETAQSSAESATQIAVDAVKAKQQFLSNMSHEIRTPMNAIIGFTKVVLKTEL----SAKQ 388

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           KEY+  I  SG  L+ LIN+ILDL++++AG+ +  E+   L   +   + + + + QEKN
Sbjct: 389 KEYLTAIKMSGDALIVLINDILDLAKVDAGKMDFEETPFRLAFSITAMLHLFETKIQEKN 448

Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402
           + + +  D  +  V   D   + Q+ILNL+SNAVKFT   G++ V+V             
Sbjct: 449 LALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAVKFTNK-GQITVSVRMLHADADKVTIE 507

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            ++ D G GI + +IPT+  +F Q S        G GLGL IA+ ++   GG   + S +
Sbjct: 508 FAVADTGIGITKDKIPTIFENFQQASSGTSRLYGGTGLGLAIAKQLVEKQGGTIRVESVV 567

Query: 463 REGVEVIAIL 472
            +G     IL
Sbjct: 568 EQGSTFSFIL 577


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +     + E  KE    I+     +  
Sbjct: 365 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 422

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG  EL    + L+  V   I      A+EK IE+  +       +  
Sbjct: 423 LVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRDENIEIAF 482

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T  GG V + +   SG G  I ++D+G GI E ++P V   
Sbjct: 483 DPDRIEQVLTNLIDNAIRHTEAGGTVRLIIER-SGDGVTIHVQDSGSGIPEEDLPFVFER 541

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL IA++I+  H G+  + SKL EG      LP 
Sbjct: 542 FYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLPA 592


>gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114]
 gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114]
          Length = 864

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 10/275 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++    +E + LIA+    +      ++ AE  N AK+ FLA+MSHE+RTPLN I+G S 
Sbjct: 321 ELTVFSSEMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSG 380

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+    + P+      +Y+  I  S Q LL LIN+ILDLS+IEAG + +     ++ +++
Sbjct: 381 VLAETKLTPI----QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVI 436

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + +   +A EKN+++   I P + +    DE  ++Q+++NL SNA+KFT   G + +
Sbjct: 437 FDTLSIDIAKATEKNLDLHIHISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHK-GFISI 495

Query: 392 TV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +V       +     I++KD+G GI       +L  F QG  +I     G GLGL I   
Sbjct: 496 SVNFSHRVENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQ 555

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           ++   GG   I S+  +G      +    V   +P
Sbjct: 556 LIELMGGTLDIESEQEKGSRFSFRIKTNIVNKKLP 590


>gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 173/448 (38%), Gaps = 30/448 (6%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           ++   D  I  +   +  +  P      +LVA    +     I  +W    +      L 
Sbjct: 2   ARPLLDDSIDLI-ASTGRQARPARLGMAVLVAGFLGFNVSAAIAIVWFAAAMVAEVYGLG 60

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           + +     ++         +  +   I +   WT LTLV   +  P              
Sbjct: 61  VTRLSRRLNLSPVLRR---LGYVTVVIVMVGVWTALTLVLWTSGNPALQWAAICLAAGQL 117

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +   +++             P   +L    I++     + +A M+        Y      
Sbjct: 118 IHAQSVTFRAPVLFAIDVGMPST-SLIVMPILTGGFAPVQIATMMTAVALMLLYTFTSAT 176

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +N +I + +A +   +                  + + AKS FLA +SHE+RTP+N +L
Sbjct: 177 ANNRRIAALEAAEAQAL------------------KASEAKSAFLAMISHEIRTPMNGVL 218

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             ++ +    +GP            + RSG+ L+ L+N++LD+SRIEAG+ E+      L
Sbjct: 219 AMTDALSRADLGP----DQARQTALLKRSGEDLMTLLNDVLDISRIEAGKLEIECQPFDL 274

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
            +++ +   +    A +K +++   I P L +    D   +RQ++ NL+SNAVKFT  GG
Sbjct: 275 PELLGDLRALWTPAATDKGLDLVLTIAPGLDAYRLGDPTRLRQILGNLVSNAVKFTRSGG 334

Query: 388 RVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            V ++     +       + D G G+   +   +  SF Q   +I     G GLGL I  
Sbjct: 335 -VALSARPGEAPGAVVFDVADTGIGMTPEQQGRLFQSFSQADASIARRFGGSGLGLSICS 393

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     G   + S L  G      LP 
Sbjct: 394 QLATLMDGAITVDSDLGSGSTFRLTLPL 421


>gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 720

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++  L    +       E ++ AE     KS+FLA++SHE+RTPLNAI+G    +     
Sbjct: 210 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 265

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +E  +EYI  IHRSG+HLL L+N+ILD+S+I++G+  L +   SL DIV +  ++ 
Sbjct: 266 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 325

Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             R Q   +E F         + + D   + Q+I NL SNA+KFT   G++ V     + 
Sbjct: 326 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 384

Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G GI+E ++  V   F Q   +      G GLGL I Q +     G 
Sbjct: 385 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 444

Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484
             I S+L  G  V     LP     +F P+ 
Sbjct: 445 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 475


>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 656

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     A+    ++  RA +   AK+ FLA+MSHE+RTP+NAI+G  E+++ E      N
Sbjct: 152 ITGQIRAEQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE----DPN 207

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +T K Y+  +  S   L+ +I++ILD+S+IEAG+  L +    +  ++ +C+ +    + 
Sbjct: 208 QTQKRYLATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISN 267

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
            KNI +  ++D ++   +  D   ++QV++NL+SNA KFT   G + V V  T       
Sbjct: 268 RKNILLTGRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQ-GHILVRVECTEQKDRLR 326

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S++D+G GIAE    ++   F Q   +   +  G GLGL I + I+   GG   IRS+ 
Sbjct: 327 FSVEDSGVGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRS 386

Query: 463 REGVEVIAILPNTRVLNFIPEDNH 486
             G      +P  +    + + N 
Sbjct: 387 GHGATFFFDIPVQQSSRAVNQPNQ 410


>gi|289621642|emb|CBI52425.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1298

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850

Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                            + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 851 KASSVQCGNDEYAIEFVVSDTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G +    
Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFYFT 934


>gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587]
 gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587]
          Length = 736

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 716

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++  L    +       E ++ AE     KS+FLA++SHE+RTPLNAI+G    +     
Sbjct: 206 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 261

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +E  +EYI  IHRSG+HLL L+N+ILD+S+I++G+  L +   SL DIV +  ++ 
Sbjct: 262 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 321

Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             R Q   +E F         + + D   + Q+I NL SNA+KFT   G++ V     + 
Sbjct: 322 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 380

Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G GI+E ++  V   F Q   +      G GLGL I Q +     G 
Sbjct: 381 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 440

Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484
             I S+L  G  V     LP     +F P+ 
Sbjct: 441 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 471


>gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 737

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +  D  +++AE  +  KS+FLA+ SHE+RTP+NAI+G ++V+    + P        
Sbjct: 49  QLVAELDRAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVLNTKVTP----EQHR 104

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  + + LLNLIN +LDLS+IEAG++ L      L   V   +  L L A EK +E
Sbjct: 105 ALTIVKNASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTLGLTAAEKGLE 164

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYIS 404
           +  ++ P +   +  D   +RQV++NLL NA+KFT   G V  +                
Sbjct: 165 LICRLPPDMPRHMQGDPIRLRQVLMNLLGNALKFTPS-GHVCCSCQVEPKAGDDCVVRFR 223

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+D G GI   ++ T+   F Q   +      G GLGL I++ ++   GG   ++S   +
Sbjct: 224 IEDTGIGIPADKLGTIFEDFTQVDSSSTRVYGGTGLGLSISRKLVQLMGGDIFVQSTPGQ 283

Query: 465 GVEVIAILPNTRVLNFIPEDNH 486
           G               +P+  H
Sbjct: 284 GSAFEFH--ARLGQVSLPDTAH 303


>gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1238

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 10/273 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E + A+    E  ++    N  KS FLA+MSHELRTPLN+IL  S+ +     G L  
Sbjct: 578 ISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLT- 636

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++   +HR+G  LL LIN++LDL+++E+GR +L    I++ D++ E    L+  A+
Sbjct: 637 EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAE 696

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
            K + +  +++  +  +   D   + Q++ NLLSNA+KFT   G V ++V          
Sbjct: 697 LKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFT-DHGDVTLSVSSQGRQEDER 755

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D+G GI   +   +  +F Q   +      G GLGL I + ++    G   +
Sbjct: 756 ELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQLVLALDGDISL 815

Query: 459 RSKLREGVEVIAILPNT--RVLNFIPEDNHEST 489
           +S    G      LP     +    P +  + T
Sbjct: 816 QSAPGLGSTFTVRLPVKVGSLSVEAPVEEPKRT 848


>gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451]
 gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451]
          Length = 968

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 26/332 (7%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L  +           +   +A A      +        +     Q  K+ L   +E    
Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++  ++
Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ ++   L  +VRE   ++
Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q RA EK I +  + +  ++  W  DE  + QV+ NL+ N +KFT   G V + +     
Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPE 615

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G + +++D+G GIAE +  ++  +F Q        +QG GLGL I++ ++   GG+  
Sbjct: 616 GQGIHFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + S+L +G      LP        P D    T
Sbjct: 674 LSSQLGQGSCFSFTLPLE---PGQPVDTPART 702


>gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             ++   C       I  L+  ++     R++AE  + +KS FLA+MSHE+RTPLNAI+G
Sbjct: 117 MEIEDRDCMVITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSE++         +E   +++  +  + + L  LI +ILDLS+IEAG  E   S + + 
Sbjct: 177 FSELLAS----ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDIN 232

Query: 330 DIVRECIIMLQLRAQE--KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            ++ +     ++R  E    ++I ++      ++  D   + QV+ N ++NA+KFT   G
Sbjct: 233 QMMFDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQE-G 291

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +          Y  +KD G GI + ++P V   F +     K  + G GLGL I Q+
Sbjct: 292 SITLGFRPYEEG-LYFYVKDTGTGIPQEKLPHVFERFVKL----KQEKNGTGLGLSICQT 346

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+   GG+  + S+   G      LP
Sbjct: 347 IVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 911

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 16/317 (5%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P+ +   T  +         L    + ++ F  +    +  S   IL     +  L  +
Sbjct: 459 LPISLPGQTWRLDLAPKAQYLLHHQYSFSMFFSIFQVVIVAFSMTLILLMNNRQAVLSRK 518

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +  A++ N AKS+FLA+MSHE+RTPLNAI+GFS++ +       +   +
Sbjct: 519 VEIRTRALALAKHEADKANKAKSQFLANMSHEIRTPLNAIIGFSQLAKRS----NDLAEH 574

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + YI  I  S   LL +IN+ILD+S+IE+ +  L E    L DI+     M +  A  KN
Sbjct: 575 QSYIHKISSSSDTLLAIINDILDISKIESEKLVLEEMEFDLHDILNRASTMFEPGASIKN 634

Query: 348 IEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------ 400
           ++   + + P+      D   + Q+++NL SNA+KFT   GR+ +               
Sbjct: 635 VDWALEDNLPAGLFFKGDPLRIEQIVINLCSNAIKFTQQ-GRIVLHATLLEHNKNESPPT 693

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++KD G GI   +   +  +F Q   +      G GLGL I+  +     G   I
Sbjct: 694 ARIQITVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTI 753

Query: 459 RSKLREGVEV--IAILP 473
            S+   G E      LP
Sbjct: 754 ESEEGVGSEFTLTITLP 770


>gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 843

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 12/277 (4%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           +  +   +A+  +++     AK   +     AEE N AKS FL++MSH++RTP+NAI+G 
Sbjct: 409 HRTLCLVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGM 468

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +  +    +G  ++E    Y+  I  S +HLL+LIN+ILD+S+IE  +  L+ S +S+  
Sbjct: 469 T-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPK 525

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +  +M+  +A+E  + +  + +  +    + D   + Q+++NLLSNAVKFT  GG V
Sbjct: 526 LLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMV 585

Query: 390 HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            +        G       + +++D G G+ E  +  +   F +   A     +G GLGL 
Sbjct: 586 ELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAH--IEGTGLGLS 643

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           I + ++   GG+  + S + EG      L   R    
Sbjct: 644 ITKGLIDLMGGKISVESWINEGSVFRVELEFDRAQAE 680


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 8/263 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++   Q  + +L  ++        +   +A      KS FLA+MSHE+RTP+NAI+G + 
Sbjct: 826  RVRQLQRIQANLEDQVAKRTEELQDMTLQALAAVQVKSAFLANMSHEIRTPMNAIMGMTH 885

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++ L  +        + Y+  I+ S + LL ++N+ILD S++EAG+ +L  +   L  ++
Sbjct: 886  LVLLTDLTA----KQRNYLYKINSSAKWLLGILNDILDFSKLEAGKLKLEYTEFRLETVM 941

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388
            +    +       K + +  ++DP + + +  D   + QV+LNLLSNA+KFT  G    +
Sbjct: 942  QYLDDVTSSLLNSKQLALRFEVDPDVPTTLIGDPLRLGQVLLNLLSNAIKFTEKGSVTLQ 1001

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V +            S+ D G G+ E +   +  +F Q   +      G GLGL I++ +
Sbjct: 1002 VQLQASDAKEACLCFSVIDTGIGLNEEQQSHLFAAFNQADDSTTRKYGGTGLGLSISKEL 1061

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +   GG   I S+L  G     I
Sbjct: 1062 VEAMGGTINIESRLGFGSTFYFI 1084


>gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 20/272 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I  +   ++   L       D+    E  K      R++AEE +  KS FLA+MSHE+RT
Sbjct: 220 IMRNTQSTDPDRLEMICVNYDITELKETQKQ-----REKAEELDRLKSAFLANMSHEIRT 274

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+GFS ++        + E  K+++  I ++ + LL LI+++LDL++IE+G  EL 
Sbjct: 275 PLNAIVGFSTLLVDT----DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELK 330

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAV 380
              + L ++ +E ++ ++++      E+   + P L S  +  D+  + Q+I N ++NA+
Sbjct: 331 LVEVDLRELCKELVVSMRIKVPA---EVALCVAPDLPSYIMRCDKVRLTQIISNFINNAI 387

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K T+  G + +            S+ D G G++      V   F +G     S +QG GL
Sbjct: 388 KHTSK-GTIVLGYEVRQD-EIEFSVTDTGDGMSPEVQQHVFDRFYKG----NSFKQGTGL 441

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I +SI+   GG+  + S+  +G      L
Sbjct: 442 GLSICKSIIEQVGGKIGVESEEGKGSRFWFTL 473


>gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 620

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 15/249 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYK---------EY 290
           E +  K+ F+  +SHELRTPL +ILGF E+I        +  L+   ++         + 
Sbjct: 367 EVDRLKTEFITVVSHELRTPLTSILGFIEIINKKFTENILPHLDMNNFRLSKAVNKINKN 426

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I   G+ + +LIN++LD+S++E+G+   +   IS+  ++ +    L    ++K I  
Sbjct: 427 FKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITDAYKALSSLFEQKGIPC 486

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
           + +I PSL  + AD + + QV++NLLSNA+KFT   G V       +     +S++D+G 
Sbjct: 487 YIEIQPSLPFINADRERLIQVVINLLSNALKFTEK-GYVKCKTALNAD-EIVVSVEDSGI 544

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E E   +   F Q    I+   +G GLGL I++ I+  HGG+  + S+L +G     
Sbjct: 545 GIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGKIWVESELGKGSTFYF 604

Query: 471 ILPNTRVLN 479
            +P  R   
Sbjct: 605 TIPLKRKEE 613


>gi|2911164|dbj|BAA24952.1| CaNIK1 [Candida albicans]
          Length = 1081

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V  +            + + D G GI + ++  +  +F Q   +      G GLGL I+
Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG+  + S+   G      
Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725


>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1351

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 143/323 (44%), Gaps = 15/323 (4%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEKD 222
              V + ++T    +     +    +L   +    Y+   L ++ +      + + + +  
Sbjct: 743  LFVNLHVATVPWKTWWAYTLY-CALLIGVIILVVYLRTRLHQTEITKQKRFVHALEQQVS 801

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +  A LE          ++AEE    KS FLA+MSHE+RTP+N ++G  ++++   +   
Sbjct: 802  EKTASLEAQAHNLKNALEKAEEATKLKSEFLANMSHEIRTPMNGVIGMLDLLKKSDLTV- 860

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  + +     S   LL LIN+ILD S+IEA + E+      L  ++      +   
Sbjct: 861  ---EQGQRVNIASSSASSLLVLINDILDFSKIEANKLEIESVDFDLRSLIETLAQSIAHT 917

Query: 343  AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
            AQ K + +   +     S V +D   ++Q++ NLLSNAVKFT  G   +   +  +   G
Sbjct: 918  AQLKGLAVIVDVSKVDASKVNSDPTRIQQILTNLLSNAVKFTEQGELSITAALLPSKNEG 977

Query: 401  QYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            QY+   ++KD G GI   ++  +  +F Q   +      G GLGL I + +    GG   
Sbjct: 978  QYVLRCAVKDTGIGIEPRKLAQLFEAFTQVDASTTRRYGGTGLGLSITKKLCELLGGDVK 1037

Query: 458  IRSKLREGVEVIAILPNTRVLNF 480
              S++ +G     I    +V + 
Sbjct: 1038 ASSEVGKGSCFEVIFEVNKVNDA 1060


>gi|183219822|ref|YP_001837818.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778244|gb|ABZ96542.1| Putative sensor protein; putative membrane protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 921

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 228 LEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            E +     E R    E+ N  KS FLA+MSHE+RTP+N +LG   ++E   +       
Sbjct: 520 KEKSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNVDI----E 575

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+Y+ +  +S   LL +IN+ILD+S++E  + E+  +  ++  + R+  ++ Q    +K
Sbjct: 576 QKDYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDK 635

Query: 347 NIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           N+++      + +   +  DE  +RQV+ NL+SNA+KFT   G + + V           
Sbjct: 636 NLKLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPS-GIITLAVKLDPSRNFIEF 694

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+E  I  +   F Q   A     +G GLGL I++ ++   GG+  + S L 
Sbjct: 695 CVHDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILN 754

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
            G      +P  +V   IPE +
Sbjct: 755 IGSTFKFTIPFHQV--AIPEQS 774


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1187

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 144/286 (50%), Gaps = 11/286 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAIL 268
           V+    Q    +L     +  + + E +++AEE   +   K+ F+A+MSHELRTPLN+IL
Sbjct: 478 VQQEELQQTNLELEERNRMINARNQEIQQKAEELEQSTRYKTEFMANMSHELRTPLNSIL 537

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             S  +   T   L N    E    I  SG  LLNLI+E+LDLS+IEAG+ EL    +S+
Sbjct: 538 LLSRYLAENTEQNL-NPDQVESASVILNSGNGLLNLIDELLDLSKIEAGKMELEYQQVSV 596

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ +   +    A+EK ++   K +   ++ +  D   + Q++ NLLSNA+KFT+  G
Sbjct: 597 EGVLNDIKSLFAPIAKEKKLDFIIKNELSEITQLETDRMRLEQILKNLLSNALKFTSK-G 655

Query: 388 RVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +V +T+      G     ++ D G GI + +   V  +F Q   + K    G GLGL I+
Sbjct: 656 QVSLTLRQPELTGNLLQFAVTDTGIGIPQNKQQLVFDAFQQADGSTKRKFGGTGLGLSIS 715

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR---VLNFIPEDNHES 488
           + +    GG+  + S+  +G E +  +P  R   V    P    E 
Sbjct: 716 RELARLLGGEISLSSEPGKGSEFVLTIPMDRQAIVPTQNPATQPEK 761


>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 764

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +    +E  + Y   I  SG+ LL +IN++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLCDTEL----DEEQRLYASTIKNSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEA + EL      L   + E +++LQ  A++K I +    D  L      D   
Sbjct: 272 LDYSKIEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           +RQV+ NL  NAVKFT   G V + V             +++I+D G GI + +I  +  
Sbjct: 332 IRQVLTNLAGNAVKFTKE-GHVTLRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFG 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q         +G GLGL I++ ++   GG+  + S+  +G      LP    +   P
Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIEMMGGEIWVDSEEGKGSCFGFRLPL--PVEAGP 448

Query: 483 EDN 485
           E  
Sbjct: 449 EAA 451


>gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 860

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 9/262 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               +  +  L   +    +  +  +  AE  N AKS FLA+MSHE+RTP+NAI+GF+ +
Sbjct: 449 ARELETYRQHLEDLVRERTAQLEGAKDAAELANRAKSAFLANMSHEIRTPMNAIVGFAHL 508

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  + + P       + +  I  S +HLL +IN++LD+S+IE+G+  L      ++D+V 
Sbjct: 509 LRRDGVTP----KQADRLDKIMGSAEHLLAIINDVLDISKIESGKLVLEAKPFRVVDVVE 564

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             + +   RAQ K +     +      +  D   + Q +LN + NA+KFT   G + +  
Sbjct: 565 RLVGLCAERAQSKGLAFRTMVGALPPVLVGDCTRLSQALLNYVGNAIKFTEA-GTITLRA 623

Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                          ++D G GIA   +  +   F Q   +      G GLGL I   + 
Sbjct: 624 EVLEEDAHSLLVRFEVQDTGIGIAGDVLSRLFRPFEQADNSTTRKYGGTGLGLAITLRLA 683

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GGQ  + S+   G      
Sbjct: 684 ELMGGQAGVDSEAGVGSTFWLT 705


>gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 593

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 127/268 (47%), Gaps = 8/268 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V ++S    + D+   + V + +++E R      +  +  F+A++SHELRTP+  + 
Sbjct: 330 RTWVLLMSPLYNQQDVRGAVAVLRDMTEERR-----LDKLRKDFIANVSHELRTPIAMLQ 384

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I  +  G  + E  KE    I+     +  L+N++LDL+R+EAG   L+  +   
Sbjct: 385 GYSEAIIDDIAG--SEEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDT 442

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++  +        A+EK +++   I         D   M QV  NL+ NA++ T  GG 
Sbjct: 443 EELTEKIYRKFLGIAKEKQVDLTYDIQVDEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGE 502

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           VH +V         + +KD+G GI E ++P +   F +   A      G GLGL I ++I
Sbjct: 503 VHFSVQSVESG-LKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNI 561

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  H G     SK   G      +P  +
Sbjct: 562 VEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 974

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 4/281 (1%)

Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           K + + L  Q    ++   E+E+AKS  ++  K+ E     KS FLA+MSHELRTPLN++
Sbjct: 508 KVSNEELEEQTHILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSL 567

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           L  S+ +       L+ E   E    I++SG  LL LIN++LDLS+IE+G+  ++   + 
Sbjct: 568 LILSKDLADNKRKNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVV 626

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386
           L    +E +   +L+A EK +++    D  L  V   D   + Q++ NL+SNA+KFT   
Sbjct: 627 LRKFAKELMSTFKLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER- 685

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G+V V +   +      S+ D+G GI E +   +  +F Q   +      G GLGL I++
Sbjct: 686 GKVQVEIKKQNKDKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISR 745

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            +    GG+  ++SK+ +G      LP       I E  +E
Sbjct: 746 ELAKLLGGEIFLKSKVNQGSTFSLSLPIETNEISISEKENE 786


>gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 627

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 24/329 (7%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEV 230
             A+ +     I    ++     +   +     K ++  L    E        L A ++ 
Sbjct: 298 IGALRNGQDTTIGFIALVIAVAVWLGIVIVRAIKQDIATLQQSEEVQRRHAGELEAVVDE 357

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                     + E  +  KS FL  MSHELRTPLNAILGFSE++    +G L NE    +
Sbjct: 358 RTRELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSL-NEQQARH 416

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I   G+HLL + N++LDL+++EAG+ +L      +   +   +  ++  A +K++ +
Sbjct: 417 LTHIQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTL 476

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------- 400
               D +L  + AD    +Q+I NLLSNA+KFT  GGR+ VT    S  G          
Sbjct: 477 TLHADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGARLNPIPDTL 536

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I++ D G GI    +  +   F Q    +     G GLGL + + ++  HGG+
Sbjct: 537 YPGEFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGR 596

Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIPE 483
               S     G       P T      PE
Sbjct: 597 IWAASDGAGCGSCFTICFPLTP--PARPE 623


>gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
 gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
          Length = 726

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217
           A+      +VV L      S      S    +   L+          K     + ++   
Sbjct: 288 AMISFGVALVVILLCWLGFSTWFRVNSKLDAIIHTLNALINSEEKQTKVKVDGSDELTIF 347

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             + + ++ E++         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++   
Sbjct: 348 AQQVNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 407

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        +E + DI  S Q LL L+N+ILDLS+IE+GR ELS     + ++V + +I
Sbjct: 408 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMI 463

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + Q +A  K +++   +  ++   V  D+  ++QV+ NL+SNAVKFT   G V V V + 
Sbjct: 464 LFQSKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFT-ESGHVCVDVSYE 522

Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        ++D G GI + ++ T+   F Q    +     G GLGL I   +++ 
Sbjct: 523 ELPEKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSM 582

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG+ +  S    G      +
Sbjct: 583 MGGKLVATSTKGVGTCFEFSI 603


>gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 766

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 12/260 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       + R  AE  N +KSRFLASMSHE+RTP+NA+LG   +++  ++ P      K
Sbjct: 221 EQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTSLKP----NQK 276

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +     S + LL++IN+ILD SR+EA  + L     ++ + +   +     +AQ K +
Sbjct: 277 ELVNTATDSSELLLSIINDILDFSRMEANTFYLENHTFNMHESLNSVLKTFHPQAQNKQL 336

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404
           E+   I  ++   V  D   +RQ++LNL+ N++KFT   G++ + V      G+   + S
Sbjct: 337 ELSLVIADNVPVYVQGDAHRLRQILLNLVGNSLKFT-DNGQIQILVNAKEHEGRIQLHCS 395

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G GI   ++  +   F     +     +G GLGL I Q ++    G   + S+   
Sbjct: 396 VQDSGIGIQPEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGL 455

Query: 465 GVEVIAILPNTRVLNFIPED 484
           G E    +   ++    PE+
Sbjct: 456 GSEFSFNI---KLDKATPEE 472


>gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 774

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 165/334 (49%), Gaps = 14/334 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             F P  + L        ++      G  +      +            +++L   A + 
Sbjct: 301 AGFPPCYIELLENFQAKAYITLPIFLGDRLWGLLGIYQNNAPRTWLTEEIEMLRQIATQL 360

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +  +           ++ AE+ N AKS+FLA+MSHELRTPL+AILGF+E++   T    
Sbjct: 361 GVALQQAKLLETLQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELL---TGDTN 417

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E +  I +S QHLLNLIN+IL LS+IEAG   +   A +L++ +      + L 
Sbjct: 418 LTSDQLESLDIITQSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLA 477

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRG 400
           A++K +E+  + D ++  V + DEK ++QV++NLLSNA+KFT + GRV + + + +  + 
Sbjct: 478 AKQKQLELIFERDANVPEVIYLDEKKLKQVLINLLSNAIKFTEV-GRVTLKITYDAHQQN 536

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            + ++ D GPGI E E   +   F Q S  I+S  QG GLGL I+Q ++   GG+  + +
Sbjct: 537 LHFAVIDTGPGIPEHEQNKLFQVFQQTSTGIRSR-QGTGLGLAISQQLVQLMGGEIRVTT 595

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
              +G      L         PE +      + +
Sbjct: 596 AENQGSCFWFELSLA-----SPEKDQADISIQAF 624


>gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56']
 gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56']
          Length = 669

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/332 (29%), Positives = 144/332 (43%), Gaps = 4/332 (1%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            L A     +        V  S    + AL  +   +     ++        L   T   
Sbjct: 189 WLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPAAFRERMLAYHAEPDGTLDLCTSDG 248

Query: 205 YHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             L  +  +            +      +    + R  AE  + AKS FLASMSHELRTP
Sbjct: 249 RSLRATERRTAEGGTVCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTP 308

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGF++++  +   PL +   KE I  + + G+HLL LI++ILDLSRIEAGR  +S 
Sbjct: 309 LNAILGFAQLLHRDRKTPLTD-RQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSI 367

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKF 382
             +++ +++ E    L   AQ   IEI     P  L  + AD     Q+++N  SNA+K+
Sbjct: 368 EPVNVPEVLIEVKTTLDPMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKY 427

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              GGR  + V         I + DNG GI + +   +   F +         +G G+GL
Sbjct: 428 GRRGGRATIAVSMPEDGVVKICVIDNGIGIPQEQHAKIFQPFQRAGQ-ETGPIEGTGIGL 486

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I + +    GG     S   EG E    LP 
Sbjct: 487 AITKRLAELMGGGVGFASIPGEGSEFWIELPA 518


>gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 435

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   + +   ++     E      +LE +     + R  AE+ + AKS+FLA MSHELRT
Sbjct: 137 LELRVQERTTELTHTLNELQQTQVQLEDSLRELIQARDVAEKASQAKSQFLAMMSHELRT 196

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+G+S+++E+E      NE   + +  I  +GQ LL + + IL++ +IEAG++  +
Sbjct: 197 PLNAIIGYSQLLEMEAQDQDLNEFIPD-LQQISHAGQDLLEIFSNILEMCQIEAGKHRFN 255

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
                +  ++ E I   Q  A + N  +         SV AD   MRQ +L LLSN+ KF
Sbjct: 256 VYEFEVKALIDEVIAQNQPLADKNNNTLTVHFVNDPGSVCADRIWMRQCVLQLLSNSCKF 315

Query: 383 TAIGGRVHVTVGWTS--------------------GRGQYISIKDNGPGIAEGEIPTVLT 422
           T   G + V++   +                         +   D G GI    +  +  
Sbjct: 316 TH-NGTITVSLERHNRSQLQSKSSVYNQVNSTDCLEDVILVKCNDTGIGIKAEYVSQIFE 374

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F Q   +      GVGLGL IA+S+    GG   + S   +G      LP     +  
Sbjct: 375 PFFQVDGSTTRKYGGVGLGLAIAKSLSQLMGGDISVESVFGQGSTFTLWLPTELPPSTS 433


>gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 1158

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 29/298 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE--------------NLAK 249
           T  L K+  ++ S Q E      ELE   +L +E ++  E                +  K
Sbjct: 414 TELLEKNEAELRSQQEELHQSNEELEEKANLLEEQKETLENAKMQIETKAHELELNSKYK 473

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN+IL  S+++       L+ +   E+  +I  SG  LL LINEIL
Sbjct: 474 SEFLANMSHELRTPLNSILILSQLLADNKNKSLSEKEV-EFAQNICNSGSDLLELINEIL 532

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKG 367
           DLS++E+G+ +L    +SL  I      M    A++K I+        L   +V  D + 
Sbjct: 533 DLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTTVHTDRQR 592

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------ISIKDNGPGIAEG 415
           + Q+I NLLSNA KFT+  G V   +   S    +            +S+ D G GI + 
Sbjct: 593 LEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDTGIGIPQN 652

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +  +F Q   + K    G GLGL I++ +    GG+  + S+  +G      +P
Sbjct: 653 KQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTFTLFIP 710


>gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 578

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 140/307 (45%), Gaps = 9/307 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAEL 228
           +  AL T          + L G      S  T  T   F+  ++      E K++L + +
Sbjct: 131 INSALITGIQTQTSDSVLLLLGGRKGQFSLETKATLQRFRPLLERAINDIEHKEELQSLV 190

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +        +++AE  N AKS+FLA MSHELRTPLNA+LG  +V+  +     +N +  
Sbjct: 191 RIKTHELYIAQQQAEHANQAKSQFLAMMSHELRTPLNAVLGLIDVLRED-----SNRSQL 245

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  +  S + LL +IN+ILDLSRIE+G ++L    + L   +   +         K I
Sbjct: 246 DLLEQMENSAELLLVIINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGI 305

Query: 349 EIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
               +         W D   + Q++ N++ NA+KFT   G V V +  T+     I ++D
Sbjct: 306 RFNVRTSICDHYEYWVDPVRLMQILFNVIGNAIKFTEA-GSVDVRLS-TARNELVIHVED 363

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    I  + + F Q   +I     G GLGL I + ++    G   + S L +G  
Sbjct: 364 TGIGIEPERIEHLFSPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSH 423

Query: 468 VIAILPN 474
            I  LP 
Sbjct: 424 FIIRLPV 430


>gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 606

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F+A++SHELRTPL  +  + E +               ++G      + ++
Sbjct: 370 EKIDMERREFVANVSHELRTPLTTMRSYLEALTDGAWKDEKIAPQ--FLGVTQNETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++    L++  ++ ++     I   +  A+++N+   +K+  +   V 
Sbjct: 428 RLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFE-MAKQQNVTFKRKLPNTEIFVE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  M QV+ N++SNA+K++  GG++   +   + +   +SI D G GI +  +  +  
Sbjct: 487 IDEDKMTQVLYNIISNALKYSPEGGQITFKLRELNEK-IEVSISDQGVGIPKENVKKIFE 545

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP      
Sbjct: 546 RFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEGKGTTIYFTLPYEPAQE 602


>gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1295

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/366 (26%), Positives = 161/366 (43%), Gaps = 17/366 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AIM 180
           ++ L     +      + +     I +++           +  +       L  Q   + 
Sbjct: 440 VIELGGHHPFDSRAELLLQRVAENIGVAVHTTEVRYELAMLLETTQEQAEKLQVQQEELR 499

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
             +      A  LA++          L  SN ++        +   EL+ A+   +   +
Sbjct: 500 QTNQELQEQAKALASSEERLQVQQEELRVSNEELEERSRSLAEKNRELDRARRELETKAR 559

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E     KS FLA+MSHELRTPLN+IL  S+++     G L      E+   IH SG  
Sbjct: 560 DLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNLQ-PRQLEFANTIHNSGSD 618

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL+LINE+LDLS+IEAGR E++   + L +++   +   Q +A++  + +  +I P    
Sbjct: 619 LLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQNGLRLSGEITPEAPA 678

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKD 407
           +++ DE  +RQ++ NLLSNA+KFT   G + +  G                R  Y ++ D
Sbjct: 679 TIFTDETRLRQILKNLLSNALKFTQQ-GEITLRCGRPARAELPTGLRLVPERAVYFAVSD 737

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GIA  ++  V  +F Q          G GLGL I++ +    GG+  + S   EG  
Sbjct: 738 SGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELSVSSCEGEGTT 797

Query: 468 VIAILP 473
               LP
Sbjct: 798 FTLWLP 803


>gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC
           25259]
 gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 781

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 163/390 (41%), Gaps = 14/390 (3%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R+ ++   +  G     + L          +      TLL A     ++N +L       
Sbjct: 125 RVTVVQPVMLDGRQVGSVLLSVGLESLYAQIGWQALVTLLAAALAMLVANRLLGRLNESV 184

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P+  A  +  ++ +   +        + ++    +         +I     E  +  A
Sbjct: 185 VVPL--ARLSALMLRISSRNDYTVRAAGSEIAEMNTLARGFNDMLGQIQQRDQELAEHRA 242

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            LE   +      K AE  + AKS FLA+MSHE+RTP+N +LG +E++    +G   +  
Sbjct: 243 RLEDQVAHRTVALKAAEAASQAKSDFLATMSHEIRTPMNGVLGMNELL----LGSSLDPQ 298

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + +   +  SGQHLL +IN+ILD S+IE+G   L      L++++ + + M   +A+ K
Sbjct: 299 QRMWAESVQHSGQHLLGVINDILDFSKIESGHLSLETVDFDLVELIDDTMRMFAHQAEHK 358

Query: 347 NIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-- 402
            +E+  +I PS  ++    D   +RQ++ NL+ NA+KFT   G V V             
Sbjct: 359 GLELACRITPSQRTIGLRGDPFRLRQIVANLVGNAIKFT-EHGAVVVHATVNDNGDAAAV 417

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GIA      +   F Q   +      G GLGL I + +    G    + S 
Sbjct: 418 GLCVEDTGIGIAPEAQARIFEHFSQADGSTTRRFGGTGLGLAICRRLANLMGSDITVASA 477

Query: 462 LREGVEVIAILPNTRVLN--FIPEDNHEST 489
             +G      L   R       P+   E++
Sbjct: 478 PGQGARFCLDLRLARASADFERPDPAGEAS 507


>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1198

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 9/265 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A LE   +     R  A   N AKS FLA+MSHE+RTP+NAI+G S +     +      
Sbjct: 458 AALERFANKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + YI  +  S   LL LIN+ILD S+IEAG+ ++ +    L +++     ++ LRA E
Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLRASE 573

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           + +E+   I+  + + +  D   + QV++NL +NAVKFT  G  ++ V+V   SG     
Sbjct: 574 RGLELLIHIERDVPTALVGDPLRLGQVLINLSNNAVKFTERGEIKITVSVAERSGENIRL 633

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D+G G+   +   + + F Q   +      G GLGL I++ +    GG   + S+
Sbjct: 634 KFRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESE 693

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486
              G      +  T++   + ++  
Sbjct: 694 AGVGSTFSFTI-QTQISQALKQEQT 717


>gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 957

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E + A+      +  AE  + AK+ FLA+MSHELRTPLN ++   +++E+  +    N
Sbjct: 559 VTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMMQLLEMTPL----N 614

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+    +S + L  L++++LD+SRIEAG+ E+ E A ++ ++++    +    AQ
Sbjct: 615 GEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSVSELFNTSAQ 674

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K + +    DPS    +  D   +RQV+ NL+ NA+KFT   G V V +     RG   
Sbjct: 675 SKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQ-GFVRVELTALPPRGLEQ 733

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G GI   +   + T F Q   A     QG GLGL I + ++   GG   +
Sbjct: 734 CRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVRRLVELMGGHITL 793

Query: 459 RSKLREGVEVIAILPN 474
            S   EG EV   LP 
Sbjct: 794 DSIFGEGTEVHVALPL 809


>gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 941

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 131/242 (54%), Gaps = 6/242 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+  ++++SHELRTPL ++LG++E++    + P   E  K+Y+  I++    L  
Sbjct: 581 EADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP---ERQKKYLNTIYQEANRLTV 637

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ R+E+G+    +   SL  +++E I  +++     +I+     D  +  V  
Sbjct: 638 LINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQFVSDADDDM--VLG 695

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NL+ NAVK++  GG + + +  ++ +  ++SI D G G+ E  +P + T 
Sbjct: 696 DRDKLLQVFQNLIQNAVKYSPAGGNITIKL-HSAPKELHVSIIDEGLGVPEEAMPNLFTK 754

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   + +    G GLGL IA+ I+  H G  ++ SKL +G     ILP  + +  I  
Sbjct: 755 FFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILPKVKGIAEITT 814

Query: 484 DN 485
           ++
Sbjct: 815 ES 816


>gi|328856936|gb|EGG06055.1| hypothetical protein MELLADRAFT_43665 [Melampsora larici-populina
           98AG31]
          Length = 1113

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 18/286 (6%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ S + + + ++  L  A   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G ++
Sbjct: 542 EMNSLKNQINSMVFSLRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQ 601

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    T+        +E +  +H    +LL +I+++LDLS+IEAGR  + +   +L   V
Sbjct: 602 I----TLATELTRQQRENLTIVHAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTAV 657

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A   N+++   I P +   V  D   MRQVI NL+ NA+KFT  GG V +
Sbjct: 658 FGVLKSLAVKALTSNLQLVFDIAPDVPDFVVGDPFRMRQVITNLIGNAIKFT-SGGHVGL 716

Query: 392 TVG------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           +         T        + D G GI   ++  +  +F Q   +      G GLGL I+
Sbjct: 717 SCEVAYQDPITDEFRLEFCVFDTGIGIKPDKLDLIFDTFCQADGSTTRKYGGTGLGLTIS 776

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           + ++   GG   + S+   G +    +         P+D+  S ++
Sbjct: 777 KRLVNLMGGTLWVESEYNYGSKFFFSI------TVKPDDDPSSDEW 816


>gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 654

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L  A S   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 466

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I  +   LL LIN+ILDLS+IEAG ++   + I +   + E    +QLR +
Sbjct: 467 EEMSEYVELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 526

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+        S  +++ D+  + Q++ N   NA+KFT + G + +          Y  
Sbjct: 527 HNNVTFTFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEV-GTIRMGYRLLDPETIYFY 585

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      S  QG GLGL I  +I+   GG+  + SK  +
Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 642 GSTFWFTLPYRQ 653


>gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 538

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 289 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 346

Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              +    +  Y+  +  + + LLNLI++ILD+S+IEAG  +L    + +  + RE I  
Sbjct: 347 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 403

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + ++  +E+    +     + AD+  + QV+ N L+NA+KFT   G + ++      
Sbjct: 404 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYLLEDE 462

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + +   +   F +      S  QG GLGL I QS++   GG+  +
Sbjct: 463 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 518

Query: 459 RSKLREGVEVIAILP 473
            S+  EG       P
Sbjct: 519 ESREGEGSCFWFTHP 533


>gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 632

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L  A S   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 389 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 444

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I  +   LL LIN+ILDLS+IEAG ++   + I +   + E    +QLR +
Sbjct: 445 EEMSEYVELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 504

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+        S  +++ D+  + Q++ N   NA+KFT + G + +          Y  
Sbjct: 505 HNNVTFTFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEV-GTIRMGYRLLDPETIYFY 563

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      S  QG GLGL I  +I+   GG+  + SK  +
Sbjct: 564 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 619

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 620 GSTFWFTLPYRQ 631


>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
 gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
          Length = 1587

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 137/276 (49%), Gaps = 12/276 (4%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHEL 260
             ++  +S    L   A         +  K +S+E      +AE+  +AKS+FLA+MSHE+
Sbjct: 1023 HHNWTQSEETYLRSLATLVGSTLVSQKRKVISEELKVALVKAEDAAIAKSQFLATMSHEI 1082

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTP+N +LG  E+++LE++           +    +S   LL +IN+ILD S+ EAG+ E
Sbjct: 1083 RTPMNGVLGMLELVQLESLSKPIETK----VDIAKKSAHSLLGVINDILDFSKAEAGKIE 1138

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNA 379
            L E   +  D++ E        AQ+K IEI    +    S +  D   +RQVI NLLSNA
Sbjct: 1139 LEEINFNGRDLIGEVAAAQAFTAQDKGIEIILDLVALEPSQLCGDPGRIRQVITNLLSNA 1198

Query: 380  VKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            VKFT+  G V V+        G    +SIKD+G GI+  +   + T F Q   +      
Sbjct: 1199 VKFTSQ-GEVVVSAKINKVAQGLEFVVSIKDSGIGISLEKQEQLFTPFSQVDASTTREYG 1257

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I + +    GG   + S+  +G    A +
Sbjct: 1258 GSGLGLAICKQLCELMGGAISLTSEAGKGSTFTATI 1293


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                 + +  +L  +    ++     +  +  K+ FLA+ SHELRTPLN I+G ++ + 
Sbjct: 423 ELANSFNSMAKQLRASFKALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLL 482

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               GPL   T    +  I  SG+ L NL+N ILD S++     +L   ++ + +IV   
Sbjct: 483 DGATGPLPEPTRTNLV-MIVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVV 541

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             + +    +K++     I   L  V+ADE  ++Q++ NL+SNA+KFT   GR+ ++   
Sbjct: 542 FTLSKPLIGKKDLTFINNISVDLPPVYADENRLQQILHNLVSNAIKFTDS-GRIEISAEI 600

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S+KD G GI+E +   +  SF Q   +      G GLGL + + ++  HGG 
Sbjct: 601 -KENLLVTSVKDTGIGISEDKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGT 659

Query: 456 FLIRSKLREGVEVIAILPNTRVLN 479
             + SK+  G      LP      
Sbjct: 660 IHVASKVVVGSRFTFTLPIAEPTE 683


>gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
 gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
          Length = 700

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +       E +K+AE  N AKS+F+A MSHE+RTPLNA+LG  E + L  +     
Sbjct: 305 ITSRKKRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLNN--- 361

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  + +S   LL +IN+ILDLSRIE+G + L  S I++++ +R     L  +A 
Sbjct: 362 -KQNLWLSQMDQSAHLLLAIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQAA 420

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + N++   +ID ++   ++ D+  + QV+ NL+ NAVKFT+IG      V         I
Sbjct: 421 KNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRV--VVRKVDDNIEI 478

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA+     +   F Q   +I     G GLGL I+Q ++    G   + S+L 
Sbjct: 479 AVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMNGTISLESELG 538

Query: 464 EGVEVIAILP 473
            G      +P
Sbjct: 539 TGSCFKVSIP 548


>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1462

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 23/313 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
               A  +     I   +    +   +   ++ +   EL       ++    AE  N AK 
Sbjct: 721  VWTADEIELLEAIAEQMG-IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKG 779

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA MSHE+RTP+N ++G +E++ +  +         +Y+  I +SG+ LL +IN+ILD
Sbjct: 780  EFLAMMSHEIRTPMNGVIGMTELLIMTDLNL----QQLDYVQTIRQSGETLLTIINDILD 835

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
             S+IEA +  L   A  L  ++   + M    A+ K++E+   IDP     +  D+  +R
Sbjct: 836  FSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLR 895

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQYISIKDNGPGIA 413
            Q++ NL+ NA+KFT   G V +TV                          +++D G GI 
Sbjct: 896  QILSNLIGNALKFTEK-GEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIP 954

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  +  SF Q   +      G GLGL I+Q +    GG   + S+   G      + 
Sbjct: 955  LDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCIL 1014

Query: 474  NTRVLNFIPEDNH 486
             T     + E + 
Sbjct: 1015 TTAQAPALAEADS 1027


>gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 641

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+   +  ++ L D  ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 259 DIGDRIRRSQELLD-AKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEIIALT----E 313

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +  E   + +L+
Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLK 373

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +E+          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 374 MKK-GVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 431 FYVADTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486

Query: 463 REGVEVIAILPNTR 476
            +G      LPN +
Sbjct: 487 EKGSTFTLYLPNKQ 500


>gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
 gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
          Length = 607

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 3/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL  +  + E +E   +     E  + ++G      + ++
Sbjct: 371 EKIEQDRREFVANVSHELRTPLTTMKSYLEALEDGALDE--PELARRFVGVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+I++  Y L  + +     + E I   ++ AQ ++I   + I    + V 
Sbjct: 429 RLVNDLLQLSKIDSHDYRLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVE 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QVI N++SNA+K++  GG +  T     G    +SI D G GI       +  
Sbjct: 489 VDKDKLTQVIDNIISNAMKYSPEGGNIT-TTLMHQGHNVRVSISDEGMGIPRENQSKIFD 547

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   +  G GLGL IA+ ++  HGG+  + S+   G  +   LP
Sbjct: 548 RFYRVDKARARSIGGTGLGLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 12/233 (5%)

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            S FLA++SHE+RTP+NAI+G + ++   ++    +   ++++  I    + LL+LIN+IL
Sbjct: 825  SEFLATISHEIRTPINAIMGMAGLLLDTSL----DAQQRDWVQTIRYGSEVLLSLINDIL 880

Query: 310  DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
            D S+IE+ + EL E+  SL  ++ E + ++  +AQ K++E+   +DP+L  ++  D   +
Sbjct: 881  DFSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRL 940

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLT 422
            RQ++ NLLSNA+KFT   G V VTV                 ++D G GI   +   +  
Sbjct: 941  RQILANLLSNAIKFTPQ-GEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRLFK 999

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F Q   +I     G GLGL I+Q +    GG   ++S+  +G      +P  
Sbjct: 1000 PFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPLK 1052


>gi|45655765|ref|YP_003574.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602736|gb|AAS72211.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 841

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 158/421 (37%), Gaps = 31/421 (7%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L++        K +   ++    +             + L   + T      +    
Sbjct: 277 FTVLSIGIFMCMFIKSLFPEEVSSFFINSAIGVFGCSSFTLALPVRVFTEFFSIIFVLIS 336

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
                  T L            L    +L F  VV+      +  +    IS  G+    
Sbjct: 337 FLPLGLTTYLFKAHKMKRKGATLILIAYLIFSTVVLNDILFTLGYISTGYISYIGITVFI 396

Query: 197 LSFFTYITYHLFKSNVKILSCQAE-----------KDDLIAELEVAKSLSD--------- 236
                 +   L ++         E            ++L+A  E+  +  +         
Sbjct: 397 FFQAGVLAQQLTQAFNHSEDLALELKSTLQENIETHNELLALKELQNTNLEFQVQSRTRE 456

Query: 237 --ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R  AE  N  KS+FLASMSHE+RTPLN I+G  E  +   +    +E  +     I
Sbjct: 457 LLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKSTPL----DENQQYIRNLI 512

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +SG++LL +IN+ILD S++E  +  L        + V E I +   +A +K + +    
Sbjct: 513 QKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDY 572

Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGP 410
            P  +     D++ + QV+ NL+SNAVKFT   G++ +         +    I + D+G 
Sbjct: 573 SPDFIDKSVGDKRRITQVLSNLISNAVKFTDS-GKIQIRAFSEKIETKIEYKIQVIDSGI 631

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   +I  +   F Q   +I     G GLGL I++ ++    G+  +     +G     
Sbjct: 632 GIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEF 691

Query: 471 I 471
            
Sbjct: 692 T 692


>gi|239993534|ref|ZP_04714058.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii ATCC 27126]
          Length = 890

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 17/299 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +             N +      E   + ++LE       E + +AE+   +KS FLA+M
Sbjct: 341 IGKLAKAALVFSDKNRETEKLLDEARTMNSQLESLNKAITEAKIKAEQATASKSMFLANM 400

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N I+G  E+ + + +      T K Y+     SGQ LL++IN+ILD S+IEA
Sbjct: 401 SHEIRTPMNGIIGLIELAQQQELST----TVKGYLDKAAYSGQILLSVINDILDFSKIEA 456

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNL 375
           G+ ++ E + SL  +    I ++ LRA+EKN+ +   ++P     V  D   + Q+I+N+
Sbjct: 457 GKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFTVNPKIPPQVIGDPLRIAQIIMNI 516

Query: 376 LSNAVKFTAIGGRVHVTVG--WTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            +NAVKFT   GR+ +                + I D+G G++  ++  +   F Q   +
Sbjct: 517 GNNAVKFTEQ-GRIDIEFDGNLNEKGNVLNLTMRITDSGIGMSAAQLDRIFKPFTQADGS 575

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------VLNFIPE 483
                 G GLGL I   +     G+    S + +G      LP         VL   P+
Sbjct: 576 TNRKYGGTGLGLAIVSQLTELMNGRLDATSTMGKGSTFEVELPLKAFKNQPGVLEQTPQ 634


>gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
 gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
          Length = 765

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 160/315 (50%), Gaps = 17/315 (5%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            +V+      +MS  ++   +   +         ++ +     ++      E  D+I  +
Sbjct: 230 AIVILSIILFLMSFFIILFRIIYPMDLLRIVMLKLSSNETNVEIEKNEFDDEMGDMIGAV 289

Query: 229 EVAKSLSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           E+ K  +++            + A+  N AKS FLA MSHELRTPLNAILGF+ +++   
Sbjct: 290 EIFKENTEKLITSEHQLKIAMEDAKNANQAKSIFLARMSHELRTPLNAILGFANILKKSM 349

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    KE +  I +SG+HLLN+INEIL+LS+IEAG+ E++       ++++E   +
Sbjct: 350 NATNQE---KENLNIIKKSGEHLLNIINEILELSKIEAGKIEINPKNFDFCELIKEIEDI 406

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             LR + KN++       +L   + ADE+ +RQ+++NLL N++KFT   G++ + + ++ 
Sbjct: 407 FALRCKSKNLKFTINQTNNLPKFIKADEQRLRQILINLLGNSLKFTNE-GQIFLNI-YSL 464

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  +KD G GI       +   F Q        +QG GLGL I + ++A  GG   
Sbjct: 465 NNKLFFEVKDTGIGIDLKNQEKIFKPFEQV-KLDNYTQQGTGLGLAITKELIALMGGTIY 523

Query: 458 IRSKLREGVEVIAIL 472
           ++S++ +G E    +
Sbjct: 524 VKSQINKGSEFYFSI 538


>gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 617

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI E +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
          Length = 617

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI E +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 21/301 (6%)

Query: 201 TYITYHLFKSNVKILSCQA-------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                   +     L  +A       E  + I +L+ A       ++ A+  ++AK  FL
Sbjct: 9   AAWQKRYERERKARLEAEAIAEKSTRELYERIQDLKKAGEELRHAKEAAQAASVAKGNFL 68

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+NAI+G +E++    +     +T +EY+  +  +G  LL+L+N+ILD S+
Sbjct: 69  ANMSHEIRTPMNAIIGMTELVLDTDL----TDTQREYLAMVREAGNSLLSLLNDILDFSK 124

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           IEAG+ EL      L + + + +  L  RA  K IE+   + P +  ++  D   +RQ++
Sbjct: 125 IEAGKLELESHVFGLRERLGDAMKSLAFRAHGKGIELACHVHPEVPDALLGDASRLRQIV 184

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +NL+ NA+KFT   G V + V + S        + ++ D G GI   ++ ++  SF Q  
Sbjct: 185 VNLVGNAIKFTTQ-GEVVLDVAYESPTNNAANLHFTVTDTGIGIPTDKLESIFDSFEQAD 243

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVLNFIPED 484
           ++      G GLGL I+  ++   GG+    S+L  G +        L   R     P +
Sbjct: 244 MSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFTMKFSLAAERPAEAQPLE 303

Query: 485 N 485
            
Sbjct: 304 A 304


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 9/395 (2%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
             N +  +G+  +    +L+  +          L +    +   + +     ++  + ++
Sbjct: 339 FRNGEGLVGQAALESRTILLTNVPDNYIQITSGLGKASPASLLVMPVQFEGQVIAVMELA 398

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           +   F       L      +     ++     ++  LA             +  L   N 
Sbjct: 399 SFGAFTPIQQSLLQQVSTHLGSVLSSLQGRMQVEQLLAESQVLTE-ELQTQSEELRGINE 457

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           K+       +    ELE  K+  +E  ++    +  KS FLA+MSHELRTPLN++L  S 
Sbjct: 458 KLEEQNKNSEQKTRELEKTKTQLEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSN 517

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++   T G LN+   K Y   IH+SG  LL LIN+ILDL+++EAG+ +L    + L +I 
Sbjct: 518 ILATNTEGNLNDHQVK-YAYTIHQSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEIS 576

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                     A++K +     +D  L   ++ DE+ + Q+I NLLSNA KFT   G V  
Sbjct: 577 EFAEQQFLPVARQKGLSFKTVVDADLPQTLYTDEQRLMQIIKNLLSNAFKFTER-GEVKF 635

Query: 392 TV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            +     G  +  G   SI D G GI + +   +  +F Q          G GLGL I+ 
Sbjct: 636 HIHHAQSGSRAKGGIAFSIIDTGIGIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISI 695

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           ++    GG   + S   +G      LP+       
Sbjct: 696 NMAQLLGGAIHVTSVPGKGSVFTLTLPSEEASESA 730


>gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 608

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL ++  + E +    +   +      ++         ++
Sbjct: 371 ERIEQERREFVANVSHELRTPLTSMKSYLEALLDGAVNDSDVAPQ--FLQVTSNETDRMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++A    +  + +++++++   I   ++  +++NI+  +++     SV 
Sbjct: 429 RLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPDVPLSVM 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + Q++ N++SNAVK++  GG + +T+     R   +S+KD G GI +  +P V  
Sbjct: 489 GDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKER-LIVSVKDEGVGIPKENLPHVFD 547

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A   +  G GLGL IA+ I+  HGG   + S   +G      LP 
Sbjct: 548 RFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKGTTFFFSLPV 599


>gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 417

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 156 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 214

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 215 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 270

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++   K +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 271 VDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 329

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  +V   F +      +  QG GLGL I 
Sbjct: 330 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 384

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 385 KSIVSQMGGEIGVESTEGVGSCFWFTHP 412


>gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 820

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 422 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+  +      
Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 593

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 650 KGTTFTFTLP 659


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            FK  +  +    E+    AE +    L    R  AE  N  K  FLA +SHELR+PLN I
Sbjct: 1002 FKGYIGSVIDITERKTAEAERDRLLELEQVARTEAETANRIKDEFLAVLSHELRSPLNPI 1061

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG++ +++     P      K+ I  I R+ +    LI ++LD+SRI  G+  L    ++
Sbjct: 1062 LGWARLLQTREFQP---AEIKKAIATIERNAKLQAQLIEDLLDVSRILQGKLNLKMFPVN 1118

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            L+ ++   +  ++L A+ K+I+I   +D SL  V  D   ++QVI NLLSNAVKFT   G
Sbjct: 1119 LVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLLSNAVKFTPEEG 1178

Query: 388  RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            ++++ +     + Q I++ D G GI+   +P V   F Q          G+GLGL I + 
Sbjct: 1179 KINIQLERIDSQAQ-ITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGGLGLGLAIVRH 1237

Query: 448  IMANHGGQFLIRS-KLREGVEVIAILPN 474
            ++  HGG     S    +G      LP 
Sbjct: 1238 LIELHGGTIWAESLGEGQGAIFRVRLPL 1265



 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 136/308 (44%), Gaps = 9/308 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +            + + +A    T  +       + F+          +         +
Sbjct: 270 SLPCGIWERSPHQAIAVPIAPSGQTGKAGILIAGLNPFRLFDDNYKRFIDLVAAQIAASI 329

Query: 231 AKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNE 285
           A + + +E RKRAE   E + AK+ F +++SHE RTPL  +LG  E  +       L   
Sbjct: 330 ANAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLAN--CATLLPA 387

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E +  + R+G  LL L+N +LD SRIEAGR + S    +L     E   + +   + 
Sbjct: 388 HEREQLEMVQRNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVER 447

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +E+        + V+ D +   +++LNLLSNA KFT   G++ V++ W +      ++
Sbjct: 448 AGMELSVNCPSLPAPVYVDREMWEKIVLNLLSNAFKFTMT-GKIAVSLQW-ANDHIEFAV 505

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI   EIP +   F +   A     +G G+GL + Q ++  HGG   + S L  G
Sbjct: 506 KDTGIGIPAEEIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAG 565

Query: 466 VEVIAILP 473
                 +P
Sbjct: 566 SCFTISIP 573


>gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
 gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
          Length = 622

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 11/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  + +  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS +++       N 
Sbjct: 383 ITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQE----ADNP 438

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +Y+  I  + + LL LI++ILDLS+IEAG ++ +   ++   +  E    +Q+R  
Sbjct: 439 EEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAMQMR-T 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+    D     + +D+  + QV+ N + NA+KFT+  G + ++     G+    S
Sbjct: 498 SPQVELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKFTSE-GSITISYQI-KGKEAKFS 555

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   V   F +      +   G GLGL I QSI+   GG+  + S+  +
Sbjct: 556 VEDTGIGIEPEKQTAVFNRFVKL----NNFIPGTGLGLSICQSIITQLGGKIGVDSEPGK 611

Query: 465 GVEVIAILPN 474
           G       P 
Sbjct: 612 GSCFWFTHPL 621


>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 959

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 8/264 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              + +    +    E R++AEE    KS FLASMSHE+RTP++ I G  +++     G 
Sbjct: 550 QQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLL----GGS 605

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 K Y+     S Q LL+++N+ILD S+IEAG+ ++ ES   +++ +        +
Sbjct: 606 ELTGEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAI 665

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399
             QEK +E+    D      V  D+   RQ++ NLL NAVKFT  G   V   +      
Sbjct: 666 LCQEKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTGYIEVTTCIEKNPDN 725

Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              +  S+KD G GIA+ +  T+   F Q  ++      G GLGL I++ +    GG   
Sbjct: 726 TLRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCGLMGGDIK 785

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S    G      +        +
Sbjct: 786 LESVKGNGSTFSFTIQLEEADESL 809


>gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1263

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 10/331 (3%)

Query: 159  LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
               AV  +   +              L+  +A   +   +    +     +  ++    Q
Sbjct: 807  FILAVVSALVLLYRIRFKILRRQREALERRVAERTSELEAANLSLAEKQEEIALQNKELQ 866

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              + +L   +       +  + RAEE +  KS FL +MSHE+RTP+NAILGFSE+++ + 
Sbjct: 867  RGRVELEDRVHERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAILGFSELLKDKD 926

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               ++ +   E+I  I  +G+ LL LI++ILD+S I++GR +L      + +++ E    
Sbjct: 927  ---IDEKDRNEFIEIIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYIDEVLNELKDF 983

Query: 339  LQLRAQE-KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +L+     ++E+          + AD    RQV+ NLL NA+KFT   G +        
Sbjct: 984  YRLKTTSLVSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALKFTEK-GSIRFGCKPR- 1041

Query: 398  GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                   + D G GI + E   V  +F +          G G+GL I + +++  GG   
Sbjct: 1042 NGEALFHVVDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLISGMGGDIW 1101

Query: 458  IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+  EG      LP ++     P D   S
Sbjct: 1102 VESQPGEGSVFYFTLPLSQ----RPVDEDSS 1128


>gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 956

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              + +   A+    + +++AEE    KS FLASMSHE+RTP++ I G  +++    +  
Sbjct: 548 QQDVTQQRQAERYLQDAKQKAEESAHMKSGFLASMSHEIRTPIHGISGVLQLLTNSPL-- 605

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  K Y+     S Q LL+++N+ILD S+IEAG+ ++ +    L++ +        +
Sbjct: 606 --NDEQKHYLSLATFSIQGLLHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQSQYAI 663

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
             QEK + +    +      V  D    RQ++ NL+ NAVKFT  G   V  T+  T+  
Sbjct: 664 LCQEKGLRLHFHFNLQGFHVVIGDSVRFRQILSNLIGNAVKFTEKGEIDVTTTLEHTNDD 723

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              ++  +KD+G GIA+ +   +   F Q  ++      G GLGL I++ +     G+  
Sbjct: 724 KLRLTCAVKDSGIGIAKDKQAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMDGEIH 783

Query: 458 IRSKLREGVEVIA 470
           + S+  EG     
Sbjct: 784 LESEKGEGSTFTF 796


>gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1622

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 10/258 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A+      ++ AEE    KS FLA+MSHE+RTP+NAI+G S +     + P   
Sbjct: 849  ITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTP--- 905

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+  I ++GQHLL +IN+ILD SRIEAG+  + +    L  ++     ++  +A 
Sbjct: 906  -RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKAG 964

Query: 345  EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
             K +E+   + P     +  D   + Q+++N  +NA+KFT   G +HV V      G+  
Sbjct: 965  VKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTER-GEIHVRVRVVERHGRRV 1023

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G G+A  ++  +  SF Q   +      G GLGL I++++    GG+    
Sbjct: 1024 LLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGAE 1083

Query: 460  SKLREGVEVIAILPNTRV 477
            S L EG     +LP   V
Sbjct: 1084 SVLGEGSTFWVMLPLECV 1101


>gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 681

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 147/260 (56%), Gaps = 3/260 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                  +++ L  +L       + ++  AE+ NLAKS FL++MSHELRTPLNAILGF++
Sbjct: 268 AAARDVTQQNILDQKLREKNIELERSKIAAEQANLAKSDFLSNMSHELRTPLNAILGFAQ 327

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  E   P   ET  + + +I ++G +L ++INEILDL++IE+G+  +    + L +++
Sbjct: 328 LL--EGGTPAPTETQTKRLKEILKAGWYLTDMINEILDLAKIESGQTPMLLEPVLLTNLL 385

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            EC  M +  A E  I++   +   + SV AD+  ++QV+ NLLSNA+K+ +  G V V 
Sbjct: 386 FECQSMFEPNALESGIKLLFSMVNRMWSVRADQTKLKQVVSNLLSNAIKYNSEQGTVEVK 445

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              ++     IS+KDNG G++  ++  +   F +    +   ++G G+GL +++ ++   
Sbjct: 446 CSESALGRIRISVKDNGAGLSAEKLAQLFQPFNRLGQEV-GVKEGTGIGLAVSKKLIEMM 504

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + S +  G E    L
Sbjct: 505 GGTIGVESAVGVGSEFWIEL 524


>gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573]
 gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573]
          Length = 968

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 32/337 (9%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L  +           +   +A A      +        +     Q  K+ L   +E    
Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++  ++
Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ ++   L  +VRE   ++
Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397
           Q RA EK I +  + +  ++  W  DE  + QV+ NL+ N +KFT   G V + +     
Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDLE 615

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G+G   +++D+G GIAE +  ++  +F Q        +QG GLGL I++ ++   GG+  
Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673

Query: 458 IRSKLREGVEVIAILPN---------TRVLNFIPEDN 485
           + S+L +G      LP           R L+ +P  +
Sbjct: 674 LSSQLGQGSCFSFTLPLDPGQPVDTPARTLDEVPVAD 710


>gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 547

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 30/367 (8%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            L+ L        +L   +        V    Q+   +    + +    A   S    + 
Sbjct: 39  ALVTLESETGIEIVLLDVMMPGLDGFEVLDILQSNPQLATCRVIMLSARADVDSKVRALA 98

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR--AEEENLAKSRFLASMSHELRT 262
                   K          L  ++ +A++ ++  R R  AE  N AKS FLA+MSHE+RT
Sbjct: 99  AGAVDFINKPFDLIELSARLQTQVRLARTEAELARARHEAESANRAKSEFLANMSHEIRT 158

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI+G  E++    +    + T +EY+  I  SG  +L+LI +ILD S+IEAGR EL 
Sbjct: 159 PLNAIIGIGELLAKTRL----DATQREYVHIIETSGNAMLSLIEDILDYSKIEAGRLELD 214

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
               +    +RE + ++QL+A+EK + I   +DP +      D    RQ+ +NLL NAVK
Sbjct: 215 AVRFAPAVCIREAVGLVQLKAREKGLRIDVAVDPGIPGYFLGDSHRFRQIAINLLGNAVK 274

Query: 382 FTAIGGRVHVT------VGWTSGRGQ------------YISIKDNGPGIAEGEIPTVLTS 423
           FT   GR+ V+      V   +G+ +             ++++D G GI       +   
Sbjct: 275 FTEQ-GRIGVSLNGHSIVPEDAGQDRTMSQSDEAWYQLVLTVEDTGIGIPPDRQSHIFAK 333

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEV--IAILPNTRVLN 479
           F Q   +      G GLGL I + +    GG   + S     +G        +   R  +
Sbjct: 334 FSQVDASTTRRYGGTGLGLAICRQLARLLGGDIEVESAGIPGQGSRFRCTVTMRACRRQH 393

Query: 480 FIPEDNH 486
             PED  
Sbjct: 394 EAPEDQT 400


>gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
 gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
          Length = 624

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +++  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 380 ITRLKATEAMLIDAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSSLL----PHIEDA 435

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    YI  I+ + + LLN+IN++LDLS+IEAG  ELS    +L D++ E     Q    
Sbjct: 436 EERNHYISLINHNNELLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVP 495

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + + ++   + + +  D   ++QV+ NL+SNA+K T   G V ++   T      IS
Sbjct: 496 E-GVTLKKRYPATPNLIKQDPMRIKQVLSNLISNALKNTVQ-GYVEISYETTPSET-RIS 552

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F +         QG GLGLPI +SIM +  G   + S + +
Sbjct: 553 VSDTGRGIPEEKLGIIFERFEKTDA----FIQGAGLGLPICRSIMEHMNGTIEVTSTVNK 608

Query: 465 GVEVIAILP 473
           G     + P
Sbjct: 609 GSTFTVVFP 617


>gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 885

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 487 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+  +      
Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 658

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 714

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 715 KGTTFTFTLP 724


>gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 788

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 181/471 (38%), Gaps = 18/471 (3%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLF---VLLVANIGTWFTQNPIFPMWSLI 78
              +   +    D  +      +L  +S  LPLF     L A   +     P   + S+ 
Sbjct: 34  RYPVPGAAPASHDETLRDSAPNALAGLSGALPLFLISGALGAAALSVAFDTPAALLASVA 93

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVY-VWRIWLLVGQIAIGL------CWTLLTLVEPGT 131
            ++V AA   L +    S           +  +                W L       T
Sbjct: 94  GISVVAAMPLLKRPADPSSAADKPGRKPIKANMTPDPDRSKAEHDSDRTWELGEFTSHLT 153

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
              + L+   +A  L    I A   F L      +   + +A +  A             
Sbjct: 154 TLFDGLSDMIAACDLEGRIIFANETFRL-AIGTENPVGLTLAQAGVAPTQTDGTGQRELV 212

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +              + +  V            +     A++   E  +RAE  + AK+R
Sbjct: 213 LGEGEAQSVWTWRETIARDPVSGKMFVHCVGRNVTATRKAEAELVEALERAEAASHAKTR 272

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHE+RTPLN ILG + ++               YI +   SGQ LL+LI ++LD+
Sbjct: 273 FLATVSHEIRTPLNGILGMTHLLSQT----ETTPEQASYIRNARESGQSLLSLIEDLLDV 328

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           + IEAGR  L E    L ++V     ++  +A EKNIEI   I       + +D   +RQ
Sbjct: 329 TSIEAGRLNLREEEGDLSELVHGVCELMASKAHEKNIEIAVHIAVDAPQRIASDIGRVRQ 388

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NL+ NA+KFT  GG V V V   +      S+ D GPG+ E +   +   F +    
Sbjct: 389 ILFNLVGNAIKFTESGG-VLVEVSLENA-ALVFSVTDTGPGLKETDKAKIFEEFERADNG 446

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                 G GLGL I+  I+   GG+  + S   +G +    +P   + N  
Sbjct: 447 PTRKHGGAGLGLSISARIVEALGGEIGVDSTPGKGSKFHFSVPIADISNSA 497


>gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 896

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 GATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   + S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVIEET 763


>gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 641

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 25/347 (7%)

Query: 147 IALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF-- 200
           I   +  +S+  L       +  S  P   A+     ++ ++     A +   +      
Sbjct: 141 IGEVVLGMSSARLLARQKEILLASMIPAFFAMILGLWIAHYLARQIAAPLGYLSGLLRTL 200

Query: 201 ----------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                     + +   L +    I       +    + + A +   +  ++AE  + AKS
Sbjct: 201 RQGEYSVRGNSRLQGELGELQDNINELAGALEGARHKQQAAMTELQQAHRQAETASQAKS 260

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHELRTP+N +LG  +++E        N   +EY      S  HLL++IN+ILD
Sbjct: 261 DFLAMMSHELRTPMNGVLGMLQLLEETA----QNGEQQEYTEAALESTGHLLDVINDILD 316

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGM 368
            SRIEAGR +L  S   L  +++ C+   +  A+ K + +  + D  L+     +D   +
Sbjct: 317 FSRIEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLRLEGDEVLAGKVTRSDPTRL 376

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFG 425
           RQV+ NL+SNAVKFT  GG  V V+V    G      I++ D G GI E +  ++  +F 
Sbjct: 377 RQVLSNLISNAVKFTQEGGVTVTVSVRPVRGDWLDLSIAVADTGIGIPEAKRSSLFKAFS 436

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +      G GLGL IA+ +    GG   + S+   G      L
Sbjct: 437 QIDSSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDAGSVFTLSL 483


>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 725

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 127/285 (44%), Gaps = 31/285 (10%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                A+  + +A  E  +       + A+E   AK+RFLA MSHE+RTPLN + G ++V
Sbjct: 121 AREKLAQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQV 180

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    + P      +E +  +  S   LL +I++ILDLS++EAG  +L E  ++  DIV+
Sbjct: 181 LATTPLDP----EQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVK 236

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             +      ++++ I I   I   +   V+ D   ++QVI NL+ NAVKFT   G V V 
Sbjct: 237 HVVRTAIAASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRK-GHVKVR 295

Query: 393 VGW-------------------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +                           +        I+D G GI +  +PT+   F   
Sbjct: 296 LHIAKFPIDERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLV 355

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +      G GLGL I + ++    G   + SK+ +G      +
Sbjct: 356 HSSTTRKYGGTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTI 400


>gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1130

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 2/281 (0%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L         +   L  +N ++ + Q+E + + AELE  +   +   +   E +  K+ F
Sbjct: 575 LVQQARELEALNTELAATNEELEAQQSELEAINAELEQQRLQIESQNQELVEADRQKNNF 634

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LASMSHELRTPLNAI+GFS+++          +   + +  ++++G+  L L+N+ILDL+
Sbjct: 635 LASMSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLLQ-LDRVYQNGKIQLRLVNDILDLA 693

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +I+AG+ EL    ++L   VRE    L+  A +KN+ +   +DPS+ SV  D + +R ++
Sbjct: 694 KIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDPSIGSVETDPQQLRTIL 753

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NLLSNA K+T   G V V     +     + ++D G GI   +   V   F +   A  
Sbjct: 754 INLLSNAFKYTER-GEVEVRARRPAADRFELEVRDTGVGIDPDQQQKVFDEFSRLEGAAT 812

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               G GLGL I + ++   GG+  + S    G      LP
Sbjct: 813 RQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853


>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1755

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 146/308 (47%), Gaps = 10/308 (3%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
              +A    A+    V D     +       +      + +            +  I   +
Sbjct: 944  ATMASLQVALDGRGVYDPVFRVVHPDGQIRYVQAAGKVGRDAKGRAVSFVGINQDITIRK 1003

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              ++  +  R++AE+ N+AKS+FLA+MSHE+RTP+NA+LG  +++    +        ++
Sbjct: 1004 QFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQLDT----RQQD 1059

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            Y+     + Q LL L+N+ILD S+I+AG+ EL   A SL D++RE  ++L      K +E
Sbjct: 1060 YVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQHHKTVE 1119

Query: 350  IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404
            +  ++DPSL   V  D+  + Q+++NL  NA+KFT   G+V + +             +S
Sbjct: 1120 LMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEA-GQVVIHLSALRQDAASVTLQVS 1178

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GI   ++  +   F Q   +      G GLGL I Q ++A  G +  + S+   
Sbjct: 1179 VTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPGR 1238

Query: 465  GVEVIAIL 472
            G      L
Sbjct: 1239 GSCFSFEL 1246


>gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 629

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+   +  ++ L D  ++RAEE +  KS FLA+MSHE+RTPLNAI+GFSE+I L      
Sbjct: 247 DIGDRIRRSQELLD-AKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEIIALT----E 301

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  +EY+G I ++   LL LIN+ILDLSRIE+G+ E+      +  +  E   + +L+
Sbjct: 302 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLK 361

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            ++  +E+          +  D   + QV+ N LSNA+K T   G +   +         
Sbjct: 362 MKK-GVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 418

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI++ ++P + T F +         QG GLGLPI +SI+   GG+  + S+L
Sbjct: 419 FYVADTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 474

Query: 463 REGVEVIAILPNTR 476
            +G      LPN +
Sbjct: 475 EKGSTFTLYLPNKQ 488


>gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1210

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 8/281 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +   + +         I+    ++      +E      ++  K+A   N AKS FL+
Sbjct: 647 WIEATAIFNSGQNRNRINLIIRDITDQIKQEELIEAQNRALEKALKKANAANEAKSLFLS 706

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           SMSH++RTP+N I+G + V +       N +  K+ +  I  S +HLL+LIN+ILD+SRI
Sbjct: 707 SMSHDIRTPMNGIVGMTTVAKESI---KNEDRIKDCLDKIDVSSKHLLSLINDILDMSRI 763

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E+G   L E  +++ D+  + + ++  +A+EKN  I   ID    ++  D   ++QV +N
Sbjct: 764 ESGNLILKEENVNISDLFHDTLTIILSQAKEKNQNIRFDIDVEHENIIVDSLRLQQVFIN 823

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           +LSNA+KFT   G + + +       Q          D+G GI++  I  +   F + + 
Sbjct: 824 ILSNAIKFTEYNGNIDINIYELPQTKQGYADYKFEFIDDGIGISKEFIDNIFEPFERENK 883

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            +    QG GLG+ I + I+   GG+ L+RS+L +G     
Sbjct: 884 EMSGKIQGTGLGMTITKRILDMMGGKILVRSELGKGTCFTV 924


>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 604

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 136/275 (49%), Gaps = 10/275 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + +   ++    +  +     L  E E+++SL  E ++ AE    AK +FLA+MSHELRT
Sbjct: 176 VLWMAKEATEAAILAKETAKALRLEKEISESLRRE-KEAAESATRAKDQFLANMSHELRT 234

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+  +LG  ++   E + P    T + Y+G  H S   LL ++N+ILD+++IEAG+  + 
Sbjct: 235 PMTGVLGMLQLALEEELAP----TLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIIIE 290

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           E   S    V   + ++    + K ++I   +   +   +  D+  +RQV++NL++NAVK
Sbjct: 291 EMPFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEVPDKLVGDQMRLRQVLINLIANAVK 350

Query: 382 FTAIGGR-VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT  G   V VT G T+  G+     ++ D G GI E +   +   F Q   +      G
Sbjct: 351 FTNEGKVAVQVTAGGTNSDGKREYTFAVTDTGIGIPEDKKDLLFHVFSQVDASHTRTYGG 410

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I + ++   GG     SK   G      +
Sbjct: 411 TGLGLAICKELVELMGGMIDFDSKEGVGSTFYFTI 445


>gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 503

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 11/299 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSC----QAEKDDLIAELE--VAKSLSDET 238
           + I++         F   IT  L   N           +++ D+ +E E        +  
Sbjct: 203 ISIAILVSALLVYIFSLKITKPLKLINNAAREIANGEFSKRLDISSEDEIGQLAESFNHM 262

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               E     +  F+A++SHELRTP+ +I GF E I     G +  E  +EY+  +    
Sbjct: 263 AVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILD---GTIPPEREREYLSIVSDET 319

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  L N++LDL+R+E+G  +L+     + +++R CII L+ +   KNI+I        
Sbjct: 320 KRLSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEA 379

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           + V+AD+  + +V+LNLL NAVKF   GG++ +     S     +S+KDNG GI   EI 
Sbjct: 380 AHVYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEM-SKGKVMVSVKDNGAGIDSEEIG 438

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-PNTR 476
            +   F +   +    + G GLGL I ++I+  HG +  + S++ +G      L P   
Sbjct: 439 LIWDRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVESEIGKGTVFYFTLNPAKE 497


>gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 632

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + E   E++  I  + 
Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LI++ILDL++IE+G  +   + +++ +++ E +   +++  + N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +++D   + QVI N L+NA+K+T+  G + +      G     S+ D G G+++    
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +G     + +QG GLGL I ++I+   GG+  + S+L +G       P
Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 522

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E  +   +  +  A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            
Sbjct: 276 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 333

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +  Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + 
Sbjct: 334 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKKNFDFKEICEETYAVHALKIPK- 390

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+           +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ 
Sbjct: 391 NVRFVFDRGSQPVTVFSDPKRVIQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 448

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G 
Sbjct: 449 DTGMGISDDDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 504

Query: 467 EVIAILPNTRVLNFIPE 483
                LP   +    P+
Sbjct: 505 TFWFTLPLKEIKENEPK 521


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G  ++++   +    N   +EY+  +  S Q+LL+L+N+I
Sbjct: 580 KSEFLANMSHEIRTPMNGVIGMVQLLQFTRL----NSEQQEYLQCLETSAQNLLSLLNDI 635

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367
           LDLS+IEAG+  L  +  SL   ++E +     +  +K +++   +   +  +   D   
Sbjct: 636 LDLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLR 695

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           ++Q++LNLL NA+KFTA  G + +    T  +       +S+ D G G+    +  +   
Sbjct: 696 LKQILLNLLGNAIKFTAA-GSITIAARITDQQNGTLTICLSVSDTGIGMTPEALQRIFAP 754

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q   +      G GLGL I + +    GG+    S    G      LP    +   P 
Sbjct: 755 FEQADNSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFFVELPFAVRMQTAPA 814

Query: 484 DNH 486
              
Sbjct: 815 AAP 817


>gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 885

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 136/230 (59%), Gaps = 6/230 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN--ETYKEYIGDIHRSGQHLLN 303
           N +KS FLA MSHELRTPLNAILGF++++  +     +   + ++E++  I RSG+HLLN
Sbjct: 410 NRSKSEFLARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLN 469

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           LIN++L++S+IEAG+  L+ +   L+ ++     ML+L+AQ K +++  +ID  +   + 
Sbjct: 470 LINDVLEMSKIEAGQISLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQ 529

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
            DE  +RQV++NLL NA+KFT  G  +    TV  +        ++D G GI+  E+  V
Sbjct: 530 TDESKLRQVLINLLGNAIKFTDAGCIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYV 589

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              F Q     KS  QG GLGL I+Q  +   GG+  + S+L +G     
Sbjct: 590 FKPFIQTETGRKSQ-QGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRF 638


>gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           A +++    +   + +      + +  +  +I E   A       R   E  +  K  FL
Sbjct: 198 AGSVTSVLSLVLDVTERIQAEKALRQSELMVIEERAQALERERAARIELERASRMKDEFL 257

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A +SHELR+PLN ILG+S ++    + P   E  ++ +  I R+ Q    LI ++LD+SR
Sbjct: 258 AIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERNAQAQTQLIEDLLDISR 314

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           I  G   L      LI +++  +  ++  A  K+I+I  +++  +  V AD + ++QVI 
Sbjct: 315 IIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIW 374

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNAVKFT  GGRV + +         I + D G GI+   +P V   F Q       
Sbjct: 375 NLLSNAVKFTPEGGRVEICLEQVETN-VQIRVTDTGKGISPEFLPYVFDRFRQADATTTR 433

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI-PED 484
            + G+GLGL I ++++  H G   + S    +G      LP     + + PE+
Sbjct: 434 NQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLPLLPSYSTVTPEE 486


>gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 734

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 322 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 381

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 382 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 496

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 557 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 597


>gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
 gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
          Length = 810

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++  +  +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 VDVNETCTEIIKSMSMKVSK-GVELIFEEPLLECYLYTDKNRFTQVISNFINNALKFTQQ 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  ++   F +      +  QG GLGL I 
Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKL----NTFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805


>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 800

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 21/282 (7%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +   + L   +  A+    E R+ A+EEN AKS FLA+MSHE+RTP+N I+GF+E+++ 
Sbjct: 114 YRKAFELLQEIVRQAR----EDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKS 169

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    N+  +E+   I +S  +LLN+IN ILDLS+IE+ + E+          +   I
Sbjct: 170 TPL----NDEQQEFANIIEKSSHNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTI 225

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
               + A E +IE++  IDPS+S  +  D   +++++ NLL+NAVKFT  GG + V +  
Sbjct: 226 DNFGVVAAENDIELYYFIDPSISSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEK 285

Query: 396 TSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D G G+++ +I  +   F Q   +I     G GLGL I +  + 
Sbjct: 286 LEATQGDRSLIEFRVIDTGIGMSQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVE 345

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             GG+ L+ S+  +G      LP   + +       E T Y+
Sbjct: 346 LMGGKLLVESEEGKGSTFSFTLPLEEIRD-------EETDYR 380


>gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 576

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 24/276 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNAI+GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           ++   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 SDA-QRGYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + D     +  D +  +Q++ NLL+NAVKF+A GG V ++V         
Sbjct: 409 AALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VLEGDWPTHVFPVPPGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL + + +   HGG   + S    G   +  LP  
Sbjct: 529 LGLAMVKQLAELHGGSVAVASVKDLGARFVVWLPIR 564


>gi|222056857|ref|YP_002539219.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221566146|gb|ACM22118.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 500

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 177/479 (36%), Gaps = 47/479 (9%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPMWSLITLAVYAANLS 88
           +  EI+   V+ ++ ++PI  +     + I  +  ++     +  +W +  L++ A  L 
Sbjct: 19  YREEILAEQVKQIYALAPIGFIATFFNSVIVFFLMKDVMEFRLLVLWGVTLLSITALRLG 78

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           L  +  N    +     WR   +V     G  W  +     G  T  +          + 
Sbjct: 79  LVLRFRNVKQHLNFAATWRRRFVVSLFIAGAAWGWIGFFPFGEITIAHQVFIAFVLGGMT 138

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
              S+  + M+     +   P +  L+    +   V   ++  ML         I+ H +
Sbjct: 139 AGASSTFS-MIKEGYAVFSIPALTPLAIHFFLMKDVFHCAMGTMLVLFGVLLWRISIHNY 197

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSD----------ETRKRAEE-------------- 244
           + N   L  + E   +I  L+ AK   +          E + RAE               
Sbjct: 198 RVNRTSLLLRFENKGMIERLKQAKERVEGLNDRLSAEVEAKHRAEADLRAHHDQLERAVT 257

Query: 245 --------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                    N    +F    SH+L+ PL  ++ + ++++ +  G L+ E    YIG    
Sbjct: 258 ERTADLTTLNKELEQFAYVASHDLQEPLRMVISYLQLLKQKYHGQLD-EKADMYIGFAVD 316

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            G  +  LI  +L  SR+  G      + + +  I    +  L    +E   E+ +    
Sbjct: 317 GGIRMQRLIEGLLSYSRLSRGA---EFTRVDINGIFAAAVANLAGVIEESGAEVTRAH-- 371

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEG 415
            L +V  DE  ++Q++ NL+SN +K+     R  V V     G     S++DNG GI   
Sbjct: 372 -LPTVIGDELQLQQLLQNLISNGLKYRKPERRPTVHVSAERQGEEWLFSVRDNGIGIDPN 430

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               +   F +   +      G G+GL + Q I+  HGG   + S   EG      +P 
Sbjct: 431 HFDKIFQIFQRLHTSE--EYPGTGIGLALCQKIIERHGGAIWVESTFGEGSTFSFTIPV 487


>gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1308

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 150/325 (46%), Gaps = 24/325 (7%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +      V  +    + A        +     K +             I + + A+    
Sbjct: 775  RFKQRGWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQ 834

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            + +K A   N AKS FLA+MSHELRTPLNAILGF++++            + E +  I+R
Sbjct: 835  KAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGR---DHCLRPEHLERLQIINR 891

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            SG+HLL LI++ILDLS+IE G+     +   L  ++     MLQ +A+ + + +  +   
Sbjct: 892  SGEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSF 951

Query: 357  SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPG 411
             L   +  DEK +RQV++NLL+NA+KFT   G V + V   +     +     ++D G G
Sbjct: 952  DLPQYIKTDEKKLRQVLINLLNNAIKFTQE-GTVILRVKPKAAENTPQRLVFEVEDTGVG 1010

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA- 470
            +A  +I  +   F Q   A K   QG GLGL I+Q  +   GG+  ++S L +G      
Sbjct: 1011 MAPDDIDQLFKVFVQAE-AGKKLNQGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFE 1069

Query: 471  -------------ILPNTRVLNFIP 482
                          LP  +V+   P
Sbjct: 1070 IEVELASGDYFQEELPAQKVVGLAP 1094


>gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
 gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
          Length = 814

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/265 (38%), Positives = 158/265 (59%), Gaps = 2/265 (0%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + V++   Q        E +  + L+DE RK+A+E N +KS+FLA+MSHELRTPLNAI+G
Sbjct: 524 TIVELRKMQQNLVAFANEADDQRLLADEQRKQADEANKSKSQFLANMSHELRTPLNAIIG 583

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FS+++     GPL NE Y EY  DI  SG  LL +IN++LD+S+IEAGR ++    +++ 
Sbjct: 584 FSDIMREGMFGPLGNEKYTEYANDIRSSGGFLLGVINDVLDMSKIEAGRMQIYPEELAVS 643

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           D+++E + ++  +A +  +++  +I+  L  + AD + ++QV++NLLSNAVKFT  GG +
Sbjct: 644 DLLQETLRIIAAQADDGELQVTTEIETGL-DIIADRRAVKQVLINLLSNAVKFTPKGGSI 702

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V+          + I D+G GI++  +  +   F Q +  +     G GLGL IA+S+ 
Sbjct: 703 QVSARRLDDN-VEMEILDSGIGISQDALERIGLPFEQAASELTRDHVGSGLGLAIAKSLA 761

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG   I S    G  V+  LP 
Sbjct: 762 ELHGGSVDISSIEGIGTTVLVRLPL 786


>gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
 gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
          Length = 960

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 6/241 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    KS  ++++SHELRTPL++ILGF+E++    + P   E  ++Y+  IH+    L N
Sbjct: 577 EVEQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKP---EKQEKYLKTIHKEANRLTN 633

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LDL R+E+G    +  ++ + D++ E +   +  +++  +      + ++  +  
Sbjct: 634 LINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSEKHTLHFINLAEKTI--IQG 691

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + ++QVI N++SNA+KF+  GG +  T+  ++    ++S+KD+G GI E E+  +   
Sbjct: 692 DSERIQQVITNIISNAIKFSPNGGDITTTLA-SNSTSLFVSVKDDGLGIPENEMKNLFRK 750

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   + +    G GLGLPI + I+  H G   + SK  EG   I  LP       +  
Sbjct: 751 FYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVESKENEGSTFIIELPLNDCSQTLKA 810

Query: 484 D 484
           +
Sbjct: 811 E 811


>gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1012

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 16/312 (5%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
             + +  ++             I+  +    ++           I+  + A+    + ++
Sbjct: 510 QGNAVGKTIELSAIGKDGLEIPISLSMSSVLLQGRWHAVGIARDISRRKAAEKELIQAKE 569

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  N+AKS+FLA+MSHELRTP N I+G  ++++   +    N+  +E++    +S + 
Sbjct: 570 QAEAANIAKSKFLANMSHELRTPFNGIMGMMQLLQTTDL----NDEQQEFVNLAIQSSER 625

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            + L+ +IL+LS IEAG+  +  +     +++     +    A +K I +   ++P +  
Sbjct: 626 FVRLLTDILELSNIEAGKMSICSAEFRTGELLESLSDLFSAEALKKGIVLEFSMEPDVPE 685

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAE 414
            V  D+  ++QV+  L+ NA+KFT   G V V +   S           S+ D G GI +
Sbjct: 686 QVSGDKTRVKQVMFTLVGNALKFT-ESGSVQVHLTSISGAKGGDTRLKFSVSDTGIGIPD 744

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ T+   F Q   +     QG GLGL + + ++    G   + S++  G  V  +LP 
Sbjct: 745 DKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDMMNGNISVESEVDRGTTVHVVLPF 804

Query: 475 TRVLNFIPEDNH 486
                 +P  +H
Sbjct: 805 -----TLPAVDH 811


>gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 949

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/429 (22%), Positives = 177/429 (41%), Gaps = 15/429 (3%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
           ++ +   F  L+  +            + +    +    L+                   
Sbjct: 4   IARLRTGFGRLLVPLLWLHVPLLAAIAFYVGKPVLMPVLLAGLFAATTHLSWHFTGSAPV 63

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEY-LTIYKSATLLIALSISALSNFMLPYAVFLS 166
              L     +G    L+ L    +W  +  +  + +  LLIA   +              
Sbjct: 64  TRYLSSVALMGEPALLVYLTSGLSWQMDMHMYFFATLALLIAWFDAPSLLLAATAIALHH 123

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                   +   +    +  + L   +    +        L   + K+++     +++  
Sbjct: 124 LVLNYTVPAAVFVNDAGINRVLLHAGIVIFQTTV------LIWLSNKLVNAFERIENMGH 177

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            L V     +   + AE+ N AKS FLA+MSHE+RTP+NAILGFS ++    +       
Sbjct: 178 VLTVQNETLEVRTREAEQANAAKSLFLANMSHEIRTPMNAILGFSHLLGRTELTA----R 233

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +Y+  I  +   LL+L+ +ILD S+IEAG+  L +++     ++   + +  L+AQEK
Sbjct: 234 QHDYVTKIRGASDRLLSLLKDILDFSKIEAGKMALEKASFDPRAMIERTMELSTLKAQEK 293

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS 404
            I I  ++DP++   +  DE  + QV+LNL+SNA+KFT+ G   + + +         I 
Sbjct: 294 GIAIGWQVDPAIPAMLRGDELRLSQVVLNLVSNAIKFTSSGEVTLKLNLREHQDSRCVIE 353

Query: 405 --IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             ++D G G++ G++  +  SF Q   +      G GLGL I++ ++A   G   + SK 
Sbjct: 354 GVVRDTGLGMSSGQVARLFDSFTQADSSTTRRFGGTGLGLAISRQLVALMDGGISVESKE 413

Query: 463 REGVEVIAI 471
             G      
Sbjct: 414 GHGSTFTFT 422


>gi|254224966|ref|ZP_04918581.1| sensor histidine kinase [Vibrio cholerae V51]
 gi|125622654|gb|EAZ50973.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 736

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + + P      ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT + G V V + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEIADGRWYYGDKARLRQIIFNLLSNAVKFTEV-GFVAVGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCGDENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGSVLVQSEVGKGSCFNVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|332142599|ref|YP_004428337.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 891

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 17/299 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +             N +      E   + ++LE       E++ +AE+   +KS FLA+M
Sbjct: 341 IGKLAKAALVFSDKNRQTEKLLDESRSMNSQLEGLNKALTESKIKAEKATASKSIFLANM 400

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N I+G  E+ + + + P    T + Y+     SGQ L+++IN+ILD S+IEA
Sbjct: 401 SHEIRTPMNGIIGLIELAQQQELSP----TVRGYLDKAAYSGQILISVINDILDFSKIEA 456

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+ ++ E + SL  +    I ++ LRA+EKN+ +   ++P L   V  D   + Q+I+N+
Sbjct: 457 GKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFNVNPMLPPQVIGDPLRIAQIIMNI 516

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            +NAVKFT   GR+ +    T           + I D+G G+++ ++  +   F Q   +
Sbjct: 517 GNNAVKFTEQ-GRIEIAFDGTLNEKGNRLNLTMRITDSGIGMSKAQLDKIFKPFTQADGS 575

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------VLNFIPE 483
                 G GLGL I   +     G+    S + +G      LP         VL   P+
Sbjct: 576 TNRKYGGTGLGLAIVSQLTELMNGRIDASSTMGKGSTFEVNLPLRAFKNQPGVLEQTPQ 634


>gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1376

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            A     V  I +A     A S    +     +  +++     E     AEL+ + +  +E
Sbjct: 871  AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAMQLQERSDELQMQQAELQRSNAELEE 930

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN++L  + ++     G L+++  + +   IHRS
Sbjct: 931  KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 989

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LL LIN+ILDLS+IEAGR ++    + LI ++       +    ++ +     +   
Sbjct: 990  GSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLDRGLAFEVAVGED 1049

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIK 406
            +   +++DE+ ++Q++ NLLSNA+KFTA  GRV + V             S      ++ 
Sbjct: 1050 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELRVNRIKDPDHRYVRDSDDVVAFAVS 1108

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GIA  ++P +  +F Q          G GLGL I++ I    GG+ +  S+   G 
Sbjct: 1109 DTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAESEPGRGS 1168

Query: 467  EVIAILPN 474
                 +P 
Sbjct: 1169 TFTLYVPV 1176


>gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 736

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1127

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 16/277 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L K N + L  +  +    +EL          R  AE  + +KS FLA+MSHE+RTP
Sbjct: 487 ANQLLKQNNEALEQRVAER--TSELTRLNEELARARDTAEGASRSKSEFLANMSHEIRTP 544

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NAILG   +     +        +EY+  +  S Q LL +IN+ILD+S+IEAGR ++ +
Sbjct: 545 MNAILGLVHLALQTDLSH----KQREYLDTVSNSAQSLLGIINDILDVSKIEAGRLQIEK 600

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
           +  SL  +V   + +L ++A+EK I + Q++D S+  ++  D   + QV++NLL NAVKF
Sbjct: 601 TNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDALVGDPLRLEQVLVNLLGNAVKF 660

Query: 383 TAIGGRVHVTVGW--------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           T   G V + +          +      ISI D G G+ E  +  +   F QG  +    
Sbjct: 661 TDS-GTVTLQIRRGTEPRDSDSDEITLEISITDTGAGMDEQTLGRLFKPFSQGDTSTTRT 719

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             G GLGL I + ++   GG   + S   +G      
Sbjct: 720 HGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFS 756


>gi|284988897|ref|YP_003407451.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
 gi|284062142|gb|ADB73080.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
          Length = 957

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/421 (23%), Positives = 163/421 (38%), Gaps = 29/421 (6%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
             G+    +         W   +L GQ A+G    L  L+       ++      A    
Sbjct: 135 LAGRLAELTAAHQRWTQDWVRPMLAGQPAVGDAVALAELLRQDKALFDHYRA-IEAQARA 193

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT------ 201
           A+         L      +   V V  +      +      L   +              
Sbjct: 194 AVGERRAGAMALQQLALYAGALVGVGTAAAVAAVLRGAYRRLEAQVVPPTQEVRDALAAL 253

Query: 202 -----------YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                        +  L +    + +      +    +   +      R  AE    AK+
Sbjct: 254 AAGDLTRRAGESGSAELRRIAADVNALGDALQERNELVATRERDLVAARDEAERAGQAKT 313

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPLNA+LG ++V+    +     +  + ++  +  SG  LL+LIN+ILD
Sbjct: 314 AFLATMSHEIRTPLNAVLGLTDVLLATDL----TDEQRGHLETVAGSGDSLLSLINDILD 369

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
            S+IEAG  +L  +   L+ +V +   +L   A    +++   +       V  D    R
Sbjct: 370 FSKIEAGELDLEAAPFDLVGVVYDVAQLLAPTASGAGLDLLVDVAGDGPWQVVGDGSRFR 429

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQ 426
           QV+ NL+ NAVKFT+  G V + +  T+  G+    +S+ D G GI+  +   +  SF Q
Sbjct: 430 QVVTNLVGNAVKFTSE-GHVVLRLTGTAAEGRLQCRLSVVDTGIGISPDQRHRLFRSFSQ 488

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPED 484
              ++  +  G GLGL I+Q I    GG   + S+L  G        LP    +   P  
Sbjct: 489 VDASVTRSYGGTGLGLAISQRIARAMGGDIQVHSELGVGSTFTVALDLPLAPAVPDDPSA 548

Query: 485 N 485
           +
Sbjct: 549 D 549


>gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1106

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 28/293 (9%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   + K  +            I + + A+      +  A+  + AKS FLA+MSHELRT
Sbjct: 587 IEASISKLELGNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLANMSHELRT 646

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILG++++++            ++ +G I + G HLL LIN+ILDLS+IEA + EL 
Sbjct: 647 PLNGILGYAQILQR---DKNITPQQRKGLGVIKQCGSHLLTLINDILDLSKIEAQKLELH 703

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
            +    +  +     + ++RA++KNI    +    L   + ADEK +RQV++NL+SNA+K
Sbjct: 704 PTDFDFLTFLCGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINLISNAIK 763

Query: 382 FTAIGGRVHVTVGWTSGRGQYIS----------------------IKDNGPGIAEGEIPT 419
           FT   G V  T          +                       ++D G GI   +I  
Sbjct: 764 FTDT-GCVIFTTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEK 822

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F Q         +G GLGL I Q I++  G    + S + +G +    L
Sbjct: 823 IFIPFEQVGD-RFRKAEGTGLGLAITQKIVSMMGSTLNVESVVGKGSKFWVDL 874


>gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 396

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 2/255 (0%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               +   + A+         A+  N +KS FLA++SHELRTPLN+I+GFSE++     G
Sbjct: 144 ALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVSHELRTPLNSIVGFSEILLDGRCG 203

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L N+  + Y+ ++  +G HL  +INEIL++S+IEAG+ E++     ++  V E    L 
Sbjct: 204 GL-NDVQRRYVQNVSNNGNHLSEIINEILEISKIEAGKAEVNLEDFCILPSVMEVKESLM 262

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
                KNI     ++P L  +  D+   + ++ +LL NAVKFT+  G V +     S   
Sbjct: 263 HSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLINAVKFTSDHGSVGIHASAISD-M 321

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +I I D+G GI   ++P +   F Q   + K    G GLGL + + ++  + GQ  + S
Sbjct: 322 MHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGGTGLGLALTKKLVILNSGQMWVES 381

Query: 461 KLREGVEVIAILPNT 475
           ++  G +V  +LP  
Sbjct: 382 EVNVGTKVHMMLPLA 396


>gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 696

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 14/290 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   L +         +   D+   LE  +      ++ AE    AKS FLA MSHE+RT
Sbjct: 276 IVDRLIRWEDGRRVRLSIAMDVTDVLEAQRE-----KELAEAATRAKSEFLARMSHEIRT 330

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ILG + +   +          +EY+  I  S + LL +IN+ILD S+IEAG+ ++S
Sbjct: 331 PMNGILGMTYLALDD----NPAPRQREYLRKIRLSAKSLLGIINDILDFSKIEAGKLDIS 386

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
           E   +L ++V+    ML  +  EK +     +   +   +  D   + +V++NLL NA+K
Sbjct: 387 EEDFALDELVQNLRAMLSAQVHEKQLSFSVNLARDVPLWLRGDALRITEVLINLLGNALK 446

Query: 382 FTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT+ GG + + VG     G       ++D G GI+ GE+  +   F Q   +I     G 
Sbjct: 447 FTSQGG-ISLDVGTDCRDGAVFLHFMVRDTGIGISAGELENLFQPFTQADSSISRRFGGT 505

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GLGL I++ +     G+    S+  +G     +LP        P  + ES
Sbjct: 506 GLGLAISRQLARLMDGKLWCESEPGKGSVFHFLLPLALAAQARPGPDAES 555


>gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 477

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 6/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F+A++SHELRTPL +I GF E +    +   + +  + ++  I+   Q
Sbjct: 246 RRLE---QMRTEFVANVSHELRTPLTSIKGFVETLLDGALD--DTKVARRFLSIINEETQ 300

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI ++L LSRIE+    + E    L   ++    +L+  A +K I +   ++ +L 
Sbjct: 301 RLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQVDVETNLP 360

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +      ++QV++NL  NA+K+T  GG+V V           + ++D G GI E  +P 
Sbjct: 361 LLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATR-GCDSVILEVQDTGIGIPEESLPR 419

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +   A      G GLGL I + I+   GG+  ++SK+  G       P   
Sbjct: 420 IFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFPVAE 476


>gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 575

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 174/370 (47%), Gaps = 13/370 (3%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
            + +G    ++ +  P     +      +  L  AL  + L+       V       V+ 
Sbjct: 165 DLELGGLIGIVNIRFPSQKVEQAQNWNNAINLASALVTAVLAMLAAYAIVRYVIVKPVLH 224

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L   +    H      A +       F  ++Y   +    +++ Q E   +  +L+    
Sbjct: 225 LKDVSDEIAHGNLDLRADIRTG--DEFEELSYAFNRMLRHLVTVQEELRTVNTDLDTKVD 282

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +   R  E N  K  FLA+MSHELRTPLN+ILGFS+++         NE  K Y+ +
Sbjct: 283 ELAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLAN---SKDLNEKQKRYVSN 339

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SG++LL  IN++LDL++IE+G+ EL  S I++ D++   +  +   A +KNIE+  +
Sbjct: 340 IQMSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSE 399

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--ISIKDNGPG 411
           IDP +  ++ D   ++Q++ NLLSNA+KFT  GGRVHV         +   + ++D G G
Sbjct: 400 IDPKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHVAARLCGENPKLMDLIVEDTGIG 459

Query: 412 IAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           I   E   +   F QG  +      +  + +G GLGL I + +     G+  + S+   G
Sbjct: 460 IPLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRG 519

Query: 466 VEVIAILPNT 475
            +  A LP  
Sbjct: 520 SKFTARLPVR 529


>gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2]
 gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2]
          Length = 771

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/294 (39%), Positives = 158/294 (53%), Gaps = 12/294 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240
           G      +  T I  H  K     L  +A   DL          A  L+D  RK      
Sbjct: 471 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKISQYKLERQAIELADLARKYSEEKT 530

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAEE N  KS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 531 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 590

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR  L    + L   + E + ++  RA+ K +E+  +I+  +  
Sbjct: 591 LLEVINDILDMSKIEAGRMRLDMEELDLARTLGESLKVVAGRAEHKQLELLSEIEDDIPI 650

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT  GGRV V    T      + I D+G GIA   +  +
Sbjct: 651 V-ADRRAVKQILINLLSNAVKFTPDGGRVTVR-SRTLPNAIVLMIADSGIGIAPQSLRRL 708

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    +     G GLGL IA+S+   HGG   +RS L  G  V+  LP 
Sbjct: 709 GQPFEQVESQLSKTYHGSGLGLAIAKSLTTLHGGSMRLRSTLGAGTVVMVTLPR 762


>gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 902

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 12/282 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
             + ++ + +             DL +  E A+    + +  AE  N AKS FLA+MSHE
Sbjct: 465 VVFSSHAIVEKAGGEPELFCVDIDLTSRKE-AEEALLKLKDAAEAANQAKSEFLANMSHE 523

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N ++G  +++E   +    +     YI     +   L  L+ +ILDLSR+EAG+ 
Sbjct: 524 IRTPINGVMGMLQLLETTPL----DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKM 579

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
           E+ E+   + DI+     +  + A+ K + +  ++ P +  +   DE  +RQV+ NL+ N
Sbjct: 580 EIREAPFHIQDIIDSVTGLFAVTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGN 639

Query: 379 AVKFTAIGGRVH-----VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+KFT   GRV      ++         ++ + D G GIAE  +  +   F Q   +   
Sbjct: 640 ALKFTER-GRVEMDISALSAKDEDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTR 698

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             QG GLGL I   ++A   G   I S   EG  V  +LP  
Sbjct: 699 NYQGAGLGLSIVHRLVALMAGTISIESAPGEGTSVHVVLPLR 740


>gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum
           gilvum SL003B-26A1]
 gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum
           gilvum SL003B-26A1]
          Length = 787

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/276 (37%), Positives = 157/276 (56%), Gaps = 5/276 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSH 258
            +     +    +   +  +  L  + +    L++   + +  AE  N AKS FLA++SH
Sbjct: 500 RLLDSERRLMATVSDLRKSRQTLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISH 559

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAI+GFS++++    GP+ +E Y EY  DIH SG +LLN+IN+ILD+S+IEAGR
Sbjct: 560 ELRTPLNAIIGFSDIMDRGMFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGR 619

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E++   + +  +V E   +++  AQEK IE+  +++P L +V AD + ++QV+LNLLSN
Sbjct: 620 MEMTVKPLGVEAVVEEAGRIIRAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSN 678

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            VKFT   G V ++V   +G      I D G GI + ++  +   F Q         +G 
Sbjct: 679 GVKFTPEKGTVRLSVHR-AGGLARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGS 737

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLGL IA+S++   GG   I S   +G  V   LP 
Sbjct: 738 GLGLAIARSLVELQGGTLTIASVPGQGTRVAFTLPL 773


>gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80]
          Length = 736

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 820

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 422 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+  +      
Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 593

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 649

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 650 KGTTFTFTLP 659


>gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
 gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
          Length = 651

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 10/362 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
             +               ++    ++I L +  +  F+L    +    P+      Q   
Sbjct: 289 IGVGAPTYLFADLGYNDLLF---IVMITLFLIFIGAFVLRVLCYRITAPLH---KLQKFS 342

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIAELEVAKSLSDETR 239
                D +    +     F       L +  + +     AE   L   ++        T 
Sbjct: 343 RSIAKDSTPPNNIFWDNWFVPIEIQELSEDLLTMSQKLIAENLILEERVQERTQYLIHTI 402

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  EE N  KS FLA+MSHELRTPLN+I+GF+ ++  E  G L NE  K+YI  I  SG 
Sbjct: 403 EELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGEL-NEKQKQYIFVILDSGN 461

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LI++IL   +++     +S   +++ DI+    + +    Q K+ ++   I P  +
Sbjct: 462 HLLALIDDILHFVKLDRHVETISLKEVNVNDIIENVSMSVMPLVQSKDQKLVIDIKPEDT 521

Query: 360 SVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            + A  D + +RQ++LN+LSNA+KFT     + +     +    +IS+ DNG GI +   
Sbjct: 522 GLTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFRPANEAAYFISVIDNGIGIEDEFK 581

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V   F Q + +     QGVGLGL I + ++  H G+  +      G+ V  +LP    
Sbjct: 582 KKVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQGRIWLEDNPSGGLIVHVVLPVRPS 641

Query: 478 LN 479
           ++
Sbjct: 642 VS 643


>gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 1131

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 40  LHVESLFRVSPILPLFVL-LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK-VMNSD 97
           +  ++L   +P + L    +V+ +  W T    + +    T + +A   ++ ++     D
Sbjct: 454 VFGDALQPYAPFVALAAAFIVSPLIAWITHGRYYLVRPNETASAHATTCAICEREYEAED 513

Query: 98  IKIGEVYVWRIWLLVGQI------------AIGLCWTLL--------TLVEPGTWTPEYL 137
           +     Y   I  L   +             +G  W  +         L    T    YL
Sbjct: 514 MAHCPAYQGPICSLCCSLDARCHDLCKPQAHLGAQWNAVLRRILPKAALPYLDTGLGHYL 573

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +      ++AL +  L    L      S  P VVA     +    +   +   ML+  +
Sbjct: 574 LLMTGIVPVLALILGVLYTHELL--ALGSPEPAVVA----RLQDSFIKTFAALLMLSGVI 627

Query: 198 SFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +++  +T    +   +  + Q +     I   +   +   + +  AE+ N AKSR++ ++
Sbjct: 628 AWWMVLTQESRRVAQEESNRQTQLLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAI 687

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+ILG+++++  +   P       + +  I +SG HLL++I   LD++RIE 
Sbjct: 688 SHELRTPLNSILGYAQILAADEDIP---PNRLQAVSVIRKSGDHLLSVIEGTLDIARIEG 744

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+  L   A+   +++++ + M +L+A+ K +    +    L   V ADEK +RQ+++N+
Sbjct: 745 GKLTLDVKAMDFPELMQQIVGMFELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINV 804

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + NAVKFT  GG V   V           I+D GPGI   ++  +   F +GS       
Sbjct: 805 IGNAVKFTVRGG-VSFKVECRRD-MAIFEIRDTGPGIPAADLERIFEPFTRGS---TVQA 859

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G G+GL IA+ +    GG+  + S   EG      L
Sbjct: 860 GGSGVGLTIARMLTDLMGGEMQVSSTAGEGTLFRIRL 896


>gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B]
 gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B]
          Length = 895

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 22/370 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L+ A    +E        RK+AE+ 
Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GIA+    T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQRTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q    +     G GLGL I++ I+   GG   + S+   G      +P        P 
Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLE---ESEPI 698

Query: 484 DNHESTQYKC 493
           +       +C
Sbjct: 699 ETGTVATARC 708


>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
 gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
          Length = 832

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 145/343 (42%), Gaps = 23/343 (6%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +++ S  ++       F + F  +++L   A  S  V       + AT L     +   L
Sbjct: 186 SMASSKSASQTSFVLFFGTLFAALISLFVAAWSSKRVKQRMDTLLSATQLVAKGQLQNGL 245

Query: 208 FKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR--------------F 252
              N    L  + E   L +          +  ++ +E N                   F
Sbjct: 246 ETLNRSRHLKGRDEFAMLTSSFRDMAFNLLKNDQKMKEYNQRLRDESDRAEAAAKAKSEF 305

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L++MSHE+RTP+N ++G + ++    +    +E           S + LL++IN+ILD S
Sbjct: 306 LSTMSHEIRTPMNGVIGMTNLLLDTKL----DEQQIRMTETTKNSAESLLSIINDILDFS 361

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371
           +IEAG+ +L      L ++V +   ML   A++K I++     P +      D   +RQV
Sbjct: 362 KIEAGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLVCPATPVMDLCYRGDPGRIRQV 421

Query: 372 ILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           + NL+SNA+KFT  G     V V     +       I+D G GI+E +   + + F Q  
Sbjct: 422 LNNLVSNAIKFTEDGEVAVYVTVDEKRLTDSILRFEIRDTGIGISEEQQQKLFSRFSQAD 481

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +      G GLGL I++ +    GG+  + S+  +G      
Sbjct: 482 SSTTRKYGGTGLGLSISKRLTEIMGGEIGVTSETGKGSTFWFT 524


>gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 805

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 167/382 (43%), Gaps = 22/382 (5%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
                + QI          +     W      +      +I  +      + +      +
Sbjct: 314 IHAHAISQILSATLDQRPLISTWPDWIEYLCILGGGLVGIIVAAYIHSPRYTILAIALSA 373

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--------FTYITYHLFKSNVKILS-- 216
                ++           +  +LA  L  +LS         F        +  ++IL   
Sbjct: 374 LLVSGISYLALLWGWWLPVVPTLASFLLISLSLDAFYQYDRFIQTKVKAQQQTLRILEQA 433

Query: 217 ---CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               + +     +EL+ +     + ++ AE  + AK +FLA MSHELRTPLNAILGFS++
Sbjct: 434 KTDLEIQVAQRTSELQQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQM 493

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  +T     N         I++SG+HLL LIN+IL L+++E+G+ EL E    L  ++ 
Sbjct: 494 MAQDTTLSEANHKRNRL---INQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLE 550

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               + +LR ++K +    K  P L   ++ D + +RQV++NLLSNA+KFT   G + + 
Sbjct: 551 TVEGIFRLRIEQKGLAFRVKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPA-GHIFLR 609

Query: 393 VGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +G     +G      I+D G GIA  E+  +   F Q     KS   G GLGLPI+Q   
Sbjct: 610 IGSIPTPAGLTLRFEIEDTGEGIAASELHKLFVPFEQTESGEKSKA-GTGLGLPISQQFA 668

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG   + S++ +G      
Sbjct: 669 QLMGGDIKVSSQVGQGTTFTFT 690


>gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134]
 gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134]
          Length = 1290

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 128/262 (48%), Gaps = 10/262 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   +  +      +++AEE  LAK +FL++MSHE+RTP+NA++G + V+          
Sbjct: 889  ITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENKPRV--- 945

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +  +  S Q LL+LIN+ILD ++I+AG+ E  E    L +++          AQ
Sbjct: 946  -DQLENLKILKFSAQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTAQ 1004

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            EKNI++    D ++   V  D   + QV+ NL++NA+KFT   G V + +   +   +  
Sbjct: 1005 EKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFTLK-GEVKLMLQLITQNNRQV 1063

Query: 402  --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++KD G GI + +   +   F Q +        G GLGL I + ++     Q  + 
Sbjct: 1064 QLRFTVKDTGVGIPKEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLE 1123

Query: 460  SKLREGVEVIAILPNTRVLNFI 481
            S+  +G +    L   + +  +
Sbjct: 1124 SEENKGAKFYFDLKLDKYMPTL 1145


>gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 775

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 160/277 (57%), Gaps = 2/277 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     L  +   + + +   +   AEL VA +     ++RAE  N AKS FLA+M
Sbjct: 498 QVRLRESERRLMATIGDLSASRITLERQKAELSVANANYQAEKERAEAANRAKSEFLANM 557

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFSE+++ +  GPL +E Y EY  DIH SG+HLLN+IN+ILD+S+IEA
Sbjct: 558 SHELRTPLNAILGFSEILQNQMFGPLGSEKYDEYSRDIHESGKHLLNVINDILDMSKIEA 617

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G   ++   I L  ++ E +    + A++KNI + Q+I   L +++AD + M+QV+LNLL
Sbjct: 618 GHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL-TMFADRRAMKQVLLNLL 676

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNAVKFT  GGR+ +           ++I D+G GI    +  +   F Q       ++ 
Sbjct: 677 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPRYALQKIGHPFEQVQSQYAKSKG 735

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I++S+   HGG+  I S  + G  +   +P
Sbjct: 736 GSGLGLAISRSLTRLHGGRMKIHSAEKVGTIISVRIP 772


>gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 734

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 322 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 381

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 382 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 496

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 557 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 597


>gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
 gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
          Length = 1045

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 10/250 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I E +  ++     + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +EYI  I  +   LL LI++ILDLS+IEAG  + S S + L DI+ E   +++ R 
Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +   I++          +  ++  + QV+ NLL+NA KFT+  G +        GR  Y 
Sbjct: 777 ETCGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-GRELYF 834

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG   + S+  
Sbjct: 835 YVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGHIGVESEEE 890

Query: 464 EGVEVIAILP 473
           +G      +P
Sbjct: 891 KGSTFWFTIP 900


>gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 810

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 129/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++             +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 608 AIVGFSSLLAETDSRN----ERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++  +  +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  +V   F +      +  QG GLGL I 
Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805


>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
 gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
          Length = 897

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K A E N AKS FLA+MSHE+RTP+N ILG +++     +        +EY+  +  S Q
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL++IN+ILD SRIE+G+ ++ E  + +   ++  I      A EK IE+   I P++ 
Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374

Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            V   D   +RQ++ NLL NA+KFT  G  +               I+D G GIA  +  
Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +F Q   +      G GLGL I+  +++  GG+ ++ S+   G E    LP  
Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPLE 491


>gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 343

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 137/261 (52%), Gaps = 10/261 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              +  +E+     D  RK A E +  KS FLA+MSHE+RTPLN ILGF+ +++   + P
Sbjct: 2   RQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP 61

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +Y+G I +S  +LL++INEILD S+IEAG+  L     +L D++++ + +L  
Sbjct: 62  ----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAP 117

Query: 342 RAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTS 397
            A  K +E+       +  ++  D   +RQ++ NL+SNA+KFT  G  V    +      
Sbjct: 118 AAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEE 177

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G G++  ++  +  +F Q   ++     G GLGL I++ ++   GG+  
Sbjct: 178 HAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIG 237

Query: 458 IRSKLREGVEVIAI--LPNTR 476
           + S   EG E      LP  R
Sbjct: 238 VDSTPGEGSEFWISLKLPKAR 258


>gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium]
          Length = 992

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 9/265 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           V+ L    +  +   E    +      ++ AE  N AK+ FLA+MSHE+RTP+N +LG +
Sbjct: 410 VQQLQLIFQDVEKFIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMA 469

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +     +  + Y+  IHRSG+ LL +IN+ILD+S+I AG   L      L ++
Sbjct: 470 DLVLRTPL----TDQQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEV 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGR- 388
           V++ I M   R + K +    +         +  D   + Q++ NLL NA+KFT  G   
Sbjct: 526 VQDVIDMFAERVKTKGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIG 585

Query: 389 --VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             V V             + D G GI+      +  +F Q  ++I     G GLGL I Q
Sbjct: 586 LFVEVLEERAWDVLLRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQ 645

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++    G+  + S   +G      
Sbjct: 646 KLVGMMAGELTVESTQGQGSIFQFT 670


>gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 736

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 598

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 126/268 (47%), Gaps = 8/268 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +S   +++    ++ +   + V + +++E R      +  +  F+A++SHELRTP++ + 
Sbjct: 334 RSMAVLMAPLYAEEHVRGAVAVVRDVTEERRH-----DKLRKDFIANVSHELRTPISMLQ 388

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE +        ++E  KE    I+     +  L+NE+LDL+R+EAG  +L+   + L
Sbjct: 389 GYSEAMVDGV--TSSDEERKEVAQIIYDESLRMGRLVNELLDLARMEAGYIDLNLEEVDL 446

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +          A+E ++ +             D   + QV+ NL+ NA++ T  GG 
Sbjct: 447 DSYLERITRKFASFAREYDVTVELAKPGRGQIAVFDPDRIEQVLTNLIHNAIRHTNPGGL 506

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + V V          ++ D G GI E ++P V   F +   A      G GLGL IA+ I
Sbjct: 507 ITV-VHEQEEERDTFAVVDTGRGIPEEDLPYVFERFYKADKARTRQHGGTGLGLAIAKHI 565

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  H G+  + S+L EG      LP  +
Sbjct: 566 IDAHQGKITVHSRLGEGTTFHFTLPKQQ 593


>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2476

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/473 (22%), Positives = 191/473 (40%), Gaps = 32/473 (6%)

Query: 40   LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
            L   S   +S + PL                  P+  L +   Y     +  +    +  
Sbjct: 1550 LDAVSRLIMSELTPLVSAHHGAFFLVDGNEAGTPLLKLTSTYAYRERKHIANRFRFGEGV 1609

Query: 100  IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
            +G+  + R  +L+ Q+          L E        L +     +   + +++   F  
Sbjct: 1610 VGQCALERKTILLTQVPPDYITISSGLGEAAPLNIIVLPVLFEGEVRAVIELASFHPFSA 1669

Query: 160  PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVK 213
             + +FL      + +    I++    +  L                 T     L +SN++
Sbjct: 1670 IHQIFLDQLTESIGVVLNMIIANMRTEQLLLQSQDLTQELQSQSNELTQQQEALKRSNIE 1729

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETR----KRAEEE---NLAKSRFLASMSHELRTPLNA 266
            +       ++    +E   +  +  R    ++AE+    +  KS FLA+MSHELRTPLN+
Sbjct: 1730 LEEKATLLEEQNRRVEEKNNEVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNS 1789

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +L  ++++     G L+ +   EY   I+ SG  LL+LINEILDLS++EAG+ ++    I
Sbjct: 1790 LLILAKLLSDNKDGNLSTKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDI 1848

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
             L ++ +         A++K ++   ++ P     +  D + ++QV+ NLLSNA KFT  
Sbjct: 1849 VLTELNQFIERSFLPVAEQKGLDFAVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDE 1908

Query: 386  GGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             G V + V        +              S+ D G GIA  +   +  +F Q   +  
Sbjct: 1909 -GSVQLKVKLAEPGTHFDHEVLRRSRYVLGFSVVDTGIGIARDKQRLIFEAFQQADGSTA 1967

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
                G GLGL I++ I    GG+  + S+   G      LP   +    PE+ 
Sbjct: 1968 RKYGGTGLGLSISREIAKLLGGEIQVASEPGRGSTFTLYLPPEYL---SPEEE 2017


>gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 546

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 18/296 (6%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +    + F  ++ +L  S  K+         L  ++E       +  ++ ++ + AKS F
Sbjct: 253 IGILAASFIEMSNNLKASYEKLEEY---SHTLQQKVEDRTRELKDANQKLQDLDKAKSGF 309

Query: 253 LASMSHELRTPLNAILGFSEVIELETM-------------GPLNNETYKEYIGDIHRSGQ 299
           L+++SHELRTPL AI+GF+ +I+                      +  KE I  I   G+
Sbjct: 310 LSTVSHELRTPLTAIIGFTNIIKKRLDTFIFPQIETNAIKSQKAIQQIKENINIILSEGE 369

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NLIN++LDL++IEAG+ E      S+ +++           ++K + +   I+ ++ 
Sbjct: 370 RLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAATTALIEQKGLALNVDIEKNIP 429

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             + D+    QV++NL+SNA+KFT   G +      T      +++ D G GIA   +  
Sbjct: 430 DFYGDKNRFIQVVINLISNAIKFTDK-GAISCYAKQT-DNKIQVTVMDTGVGIAPENLEK 487

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F Q    + +   G GLGLPI + I+  HGG     S+  +G      +P  
Sbjct: 488 IFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAESEPNKGTAFSFTIPLR 543


>gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1013

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 174/401 (43%), Gaps = 20/401 (4%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            + +  K  +V  WR    V    IG     L  +           +        + +I 
Sbjct: 414 WIPNLSKTSKVVRWRKSFYVQNSPIG---GDLPWIIAIEEANASHLLALDRIYTKSFAIL 470

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +   + P         +V  L   A ++ ++ D                    L  +  
Sbjct: 471 MVLAILSPLLAKTISSSLVKPLLELANLTSNLPDKLTEQQSLQIPGSPITEINTLSSNFQ 530

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +     +K     E++       + ++ A+  N AKS FLA+MSHELRTPLN ILG+++
Sbjct: 531 VMAGALQDK---FQEIQQVNVEIQQAKEFADAANNAKSEFLANMSHELRTPLNGILGYAQ 587

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++        +E   + I  I++ G HLL LIN+ILDLS+IEA + +L  + + L   +
Sbjct: 588 ILQR---SEPLSEKGHKGIDIIYQCGSHLLTLINDILDLSKIEARKLDLYPAPLHLPSFL 644

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +  I + ++RA++K I    + +  L   V+ADEK +RQV++NLL NA+KFT   G V  
Sbjct: 645 QNVIEINRIRAEQKGITFDYQANSQLPIGVYADEKRLRQVLINLLGNAIKFTDK-GSVTF 703

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V    G+     I D G G+   ++  +   F Q     K   +G GLGL I+  I+A 
Sbjct: 704 KVEPI-GQKIRFQIADTGTGMTSEQVEKIFLPFEQVGD-TKKQAEGTGLGLAISHKIVAL 761

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            G +  + S   EG      +        +PE    ++  +
Sbjct: 762 MGSEITVDSIPGEGSTFSFEV-------ELPEAEDWASTSR 795


>gi|169334065|ref|ZP_02861258.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258782|gb|EDS72748.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
          Length = 734

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 139/255 (54%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+  E E       +  + A   N AK+ FL+SMSH++RTP+NAI+G + + +       
Sbjct: 448 DIKVEQEAHNQALKDAYEMARNANNAKTDFLSSMSHDIRTPMNAIMGMTVIAKNN---KD 504

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N E  ++ +  I  S  HLL+LIN++LD+S+IE+G+  L+E  + L  I+ + + ++   
Sbjct: 505 NVEKLEDCLDKIETSSNHLLDLINDVLDMSKIESGKVTLNEEPLDLDSIIDDVLNIILPT 564

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401
           A++K+I +    + + + V  D   + Q+ LN+LSN+VKFT   G + + +   T     
Sbjct: 565 ARDKHITVKLNKEINHAFVQGDVLRINQIFLNILSNSVKFTPKNGNIQIFIREITPEYKN 624

Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           YIS      DNG G++E     + T F +   +I    +G GLG+ I ++I+    G+  
Sbjct: 625 YISYEFKFIDNGIGMSEEFKDKIFTPFARSEESIIKNVEGTGLGMSIVKNIVDMMNGEIY 684

Query: 458 IRSKLREGVEVIAIL 472
           ++SK+ +G E   IL
Sbjct: 685 VKSKINKGSEFTVIL 699


>gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 607

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A++    +  F+A++SHEL+TPL  I  ++E +    +   N E    ++  +    + +
Sbjct: 367 AQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVL--ENTELATSFLQVVDGEAERM 424

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LS ++  +   ++  ++L +I+   I+ + + A+ K  EI   +      +
Sbjct: 425 ARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEIITHLQDEPVHI 484

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           +AD+  + QVILN+LSN++K+T  GGR+ V +         + I+D G GI + +I  + 
Sbjct: 485 YADKDRIEQVILNILSNSIKYTPEGGRIIVDL-IVDEGVVTLKIRDTGIGIPKEDIARIF 543

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             F +   A      G GLGL IA+ I+  H G   I S+   G EV   LP T +
Sbjct: 544 ERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLPVTEI 599


>gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 1267

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 12/268 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +    +  + AE+ N AKSRFLA +SHE+RTPLN I+G S+++    + P 
Sbjct: 588 RDITEQKHIQEELIQATQEAEQANAAKSRFLAMVSHEIRTPLNGIIGLSQLMRRTGLSP- 646

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL- 341
              + K+Y+  +  S + LL +IN++LD S+IEAG+ E+   A    +++      L + 
Sbjct: 647 ---SQKDYMDKLGNSSESLLRIINDLLDFSKIEAGKVEVERVAFQPQEMLSRLTDQLSVF 703

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396
              ++  E   ++   L + +  D+  + Q++LNL  NAVKFT   G V + +      +
Sbjct: 704 MGGKEQFEFILEVPEQLPTTLLGDQMRVEQILLNLCMNAVKFTER-GHVKLALEVMEQCS 762

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G     +++D G G+ + +I  + T F Q   +      G GLGL IA  ++   GG+ 
Sbjct: 763 DGLKLQFTVEDTGIGMTKKQIDKLFTPFTQADGSTTRKYGGTGLGLVIANGLVKMMGGKI 822

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484
            + S+   G     +L +  VL+ + E+
Sbjct: 823 QVDSEPGLGSRFSFVL-SFPVLSSVMEE 849


>gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
 gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
          Length = 571

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +   +   N   +    E    I   + A+      ++ A + + AK  F+  M
Sbjct: 152 QPLWISVINSVIMGNNGRVDKYIETIIDITAKKKAELELIAAKEEALQLSRAKDMFMGVM 211

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNA++G S ++  +       E+ KE +  ++ S ++L+ LIN++LD ++IE 
Sbjct: 212 SHEIRTPLNAVIGMSHILLND----NPLESQKENLSILNFSAENLMTLINDVLDFTKIET 267

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G  EL  + + + D+++  I  ++ +A EK I + + ID ++   V  D   + Q++LNL
Sbjct: 268 GNVELEIARLDIRDMIQSIIGSMKYKANEKGIYLTKSIDEAVPDIVMGDRARLVQILLNL 327

Query: 376 LSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +SN+VKFT+ GG  + + V   +     I   + D G GIAE ++ T+  SF Q      
Sbjct: 328 VSNSVKFTSEGGVNIDLKVIEQTKDTVRIRFGVSDTGIGIAENKLNTIFESFKQAEADTT 387

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I++ ++  H  +  + S L +G      +
Sbjct: 388 RHYGGTGLGLAISKRLIQLHDSRINVDSVLGQGSTFWFTI 427


>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1444

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 8/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++ A++     ++ AE+    KS FLA+MSHE+RTP+NAI+G S +     + P   
Sbjct: 689 ITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTP--- 745

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I  +GQHLL +IN+ILD S+IEAG+  +      L  ++     +L  +  
Sbjct: 746 -RQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTN 804

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401
            KN+E+   +   +   +  D   + Q+++N  +NAVKFT  G   + V V   +     
Sbjct: 805 AKNLELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQERTQTEVV 864

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y +++D G GI   +   +  SF Q   +      G GLGL I++ +     G   + S
Sbjct: 865 LYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVGVES 924

Query: 461 KLREGVEVIAI 471
           +  +G      
Sbjct: 925 EYGKGSTFWFT 935


>gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 885

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 487 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+  +      
Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 658

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 714

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 715 KGTTFTFTLP 724


>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
 gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
          Length = 1072

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
             ++      +     +L      +        S+      +I  L N  LP A+     
Sbjct: 165 RTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +AL  Q  +     ++         +        + L  +    L  +      +  
Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +   ++ + +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P      
Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+  IH S   LL +IN+ILD S+IEAG+  +  +   L D+     ++   +A EK 
Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
           +E+   +       +  D   + Q+I+NL++N+VKFT   G + V+V             
Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D G G+ + ++ ++ T+F Q   +      G GLGL I + ++   GGQ  + S+ 
Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513

Query: 463 REGVEVIA 470
            +G   I 
Sbjct: 514 GKGSHFIF 521


>gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1128

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 8/274 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +  +  +     +         I   + A     + R  AE+ + AK  FLA+MSHE+RT
Sbjct: 353 MHGNTHRDEEGQIMGIYAILTDIRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRT 412

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAILG + +     +    NE  + ++  ++ +G  LL ++N+ILD S+IEAG  E+ 
Sbjct: 413 PMNAILGMTHLCLQTDL----NERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIE 468

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVK 381
           ++++ + +++     ++ +RA EK IE+    D +L  +   D   + QV++NL+ NA+K
Sbjct: 469 KTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALK 528

Query: 382 FTAIGGRV-HVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  G  V  + V  ++ R      S+KD G G+   ++  +  SF Q   +      G 
Sbjct: 529 FTEQGEVVVRIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGT 588

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL I+  ++   GG   + S   +G      L
Sbjct: 589 GLGLAISHRLVQLMGGVLKVESTPGQGSCFSFTL 622


>gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1009

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 10/273 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               ++ V  L   A     +  ++  +      R RA+  ++AK  FLA MSHE+RTP+
Sbjct: 580 RVWGEAEVNALRVLASSLAGLILIQENQEALQIARDRADAASVAKGEFLAMMSHEIRTPM 639

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G+++++    +    +E   E    I RSG+ LL LIN ILD S+IE+   EL  S
Sbjct: 640 NAIIGYTDLLRQTNL----DELQAEQASIIKRSGKALLELINNILDYSKIESRTLELETS 695

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
            + +  +V E +  +  +++EK ++I  +I  ++ ++ W D   +RQ+++N  +NAVKFT
Sbjct: 696 NVDVEQVVCEALEYILPQSKEKALKIDFEISETVNAAYWGDPHRLRQILMNFANNAVKFT 755

Query: 384 AIGG-RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
             G  R+ V +  +         Y  + D G GI E +   +   F Q   +      G 
Sbjct: 756 DTGSIRIDVDLKHSESSPDTHALYFRVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGT 815

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I++ ++    G+  + S++ EG     +
Sbjct: 816 GLGLVISKRLIERMDGRVWVSSQVGEGTTFHFV 848


>gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1160

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 3/292 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L +    +   + E D     L   ++  +E  +  +  +  KS
Sbjct: 430 AHLETQQAELEQTNEKLSEQAQTLADQRDELDQRNTTLGRIQAQLEERAEELQRASRYKS 489

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++     G L++E  K +   I+ +G  LLNLIN+ILD
Sbjct: 490 EFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQVK-FAESIYSAGNDLLNLINDILD 548

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           ++++EAG+ E+      L  ++     +    A E+ +    +    L  V + D +   
Sbjct: 549 IAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSFQIEEQRELPQVLFTDRQRAE 608

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA KFT  GG V ++V          +++D G GIA  +   +  +F Q   
Sbjct: 609 QILRNLLSNAFKFTDRGG-VTLSVSRQDDHYLAFAVRDTGIGIAADQQEAIFEAFRQADG 667

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                  G GLGL I++ +    GG   + S   EG     +LP   V + +
Sbjct: 668 TTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTLLLPERMVEDAV 719


>gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 785

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G + +  G        + 
Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRLGFGRMDKD-IRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I + I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLNF 480
           G      +P       
Sbjct: 630 GSTFYFTIPYEETGEH 645


>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1092

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 7/261 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +    Q   D    +L+   S      + A +    KS+FLA+MSHE+RTP+N +LG +E
Sbjct: 559 ERYEAQERLDAFALQLQQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTE 618

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    +     E  +     + +SG+HLL +IN+ILD S+IE+G+ EL  +       +
Sbjct: 619 LLVQSGL----TEEQRSLALSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATI 674

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              I ++   A  KN+E+   I   +   V  D   +RQV+LNLL NA+KFTA  G + +
Sbjct: 675 EAVIELMAPTAHIKNLELTYWIAAEMPARVRGDAARLRQVLLNLLGNALKFTAE-GEIAI 733

Query: 392 TVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              + +      +S+ D G GI E  IP +  +F Q   +      G GLGL IA+SI+ 
Sbjct: 734 QATFDAAADRLRVSVADTGIGIPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVE 793

Query: 451 NHGGQFLIRSKLREGVEVIAI 471
              G+  I S+   G      
Sbjct: 794 LMDGEIGIESRYGHGSTFWFT 814


>gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
 gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1782

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 165/391 (42%), Gaps = 31/391 (7%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             ++ L     +   + +        + + ++ ++  M    +      +   L  +    
Sbjct: 1113 AVIELASFEEFNETHHSFLNQLMETVGIVLNTIAATMRTEGLLAQSQLLTQELQAR---- 1168

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                       L             L +    + + + + +    E+E+A+   +E  ++
Sbjct: 1169 --------QTELTRKQEELHATNEELQEKAQLLENEKKQVEAKNFEIEMARRAVEEKAEQ 1220

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  KS FLA+MSHELRTPLN++L  S+++     G L NE   E+   IH +G  L
Sbjct: 1221 LALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNQQGNL-NEKQTEFARTIHGAGTDL 1279

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
            LNLIN+ILDLS+IE+G   +    +S+  + +      +  A EK +      D SL + 
Sbjct: 1280 LNLINDILDLSKIESGTVSIDIGDMSIPGMKQHVERTFRQVASEKGLAFEIDFDDSLPAS 1339

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407
            +  DEK ++Q++LNLLSNA KFTA  GRV + V                      IS+ D
Sbjct: 1340 IQTDEKRLQQIVLNLLSNAFKFTAR-GRVTLNVRPARHGWSPTHPVLGDLDRALEISVSD 1398

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GI E +   +  +F Q          G GLGL I++ I    GG+  +RS   EG  
Sbjct: 1399 TGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELQVRSVPGEGST 1458

Query: 468  VIAILPNTRVLNF---IPEDNHESTQYKCYA 495
                +P   V+     +     E+     +A
Sbjct: 1459 FTLYVPMKAVITSPALLAAPTTENDPVVTFA 1489


>gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 2095

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 161/386 (41%), Gaps = 25/386 (6%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L          L +     +   + +++L++F      FL      + +   +I +   
Sbjct: 1293 ALFRVAPKNLVVLPVLFEGQVKAVIELASLTSFTTSQMTFLEQLTDSIGIVLNSIEATMQ 1352

Query: 185  LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             +  L      A          L ++N ++     +  +   E+E      ++ R+  EE
Sbjct: 1353 TEGLLKQSQQLA-GELQTQQRELQQTNDQLEQKAQQLAERNVEVERKNQEIEQARRALEE 1411

Query: 245  -------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN+IL   + +     G L+     E+   IH +
Sbjct: 1412 KATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTDNPDGNLS-AKQVEFARTIHGA 1470

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LLNLI++ILDLS+IE+G   +    I   +++       +  A+ +N+     +DP+
Sbjct: 1471 GTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRNLSFKIDVDPN 1530

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYI 403
            L+  +  D K ++QV+ NLLSNA KFTA  G V + VG   G                  
Sbjct: 1531 LARSIVTDSKRLQQVLKNLLSNAFKFTAE-GEVRLKVGGALGGWGTDHPVLNSAPAVISF 1589

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +  +F Q          G GLGL I++ + +  GG+  +RS   
Sbjct: 1590 EVSDTGIGIPLEKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELASLLGGEIHLRSAPG 1649

Query: 464  EGVEVIAILPNTRVLNFI-PEDNHES 488
            +G      LP       + P    + 
Sbjct: 1650 KGSSFTLYLPLKYSGPTLAPRATPQQ 1675


>gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 713

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+  ++ E      L    R +AE  N  K  FLA +SHELRTPLNAILG+S++++   +
Sbjct: 311 EQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPLNAILGWSKLLQSRRL 370

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + E   + +  I ++    + LI ++LD+SRI  G+  L  + I+L   +   +  +
Sbjct: 371 ---DQEKTSQALATIEKNANLQVQLIEDLLDISRILQGKLTLDITKINLKSTILSALETM 427

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +L A+ K IE+    +P++  V  D   ++QV+ NLLSNA+KFT  GG++ V +   +  
Sbjct: 428 RLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNALKFTPKGGKIEVRLEQ-ADG 486

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI+   +P V   F Q          G+GLGL I ++I+  HGG    +
Sbjct: 487 YAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGLGLAIVRNIVEIHGGIVKAK 546

Query: 460 SK-LREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           S+   +G      LP       +P+++   T  +  A
Sbjct: 547 SEGEDKGAIFTVSLPL------LPDESRSLTDKQNSA 577


>gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 867

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RA + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   ++
Sbjct: 622 IQRYKDTEDELIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEAFSS 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++++  I+ +   LL LIN+ILDLSRIE+G  +   S+ +L  I+++     Q  + 
Sbjct: 680 EEVQQFVETININCTLLLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDS-QRLSM 738

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + +E+           +  D   ++QV+ NL++NA KFTA  G + +           +
Sbjct: 739 PQGVELRTDFPEGTGKDIVTDSVRLKQVVNNLINNARKFTAK-GSITLGYSMEEPGYTTV 797

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI++ +   +   F +      S  QG GLGL I Q+I+    G   + SKL 
Sbjct: 798 FVEDTGAGISDEDQKHIFERFYKAD----SFTQGAGLGLSICQTIVERLHGTITVTSKLG 853

Query: 464 EGVEVIAIL 472
            G      L
Sbjct: 854 RGTRFEVRL 862


>gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1062

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 9/278 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +        VK++      ++   + E  +       + A++ N AKS FLA MSH++
Sbjct: 630 IILAESRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMSHDI 689

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G + +       P   E  +E +  I  S  HLL+LINEILD+S+IE G+ E
Sbjct: 690 RTPMNAIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKGKIE 746

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L+E    L +++ +   + +  A +K  E+  +    + +    D   +RQV++NL++NA
Sbjct: 747 LTEEPFCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLITNA 806

Query: 380 VKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           VK+T  GGR+ V V   +GR         +++DNG G+    +  +   F +   +    
Sbjct: 807 VKYTQNGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRR 866

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            QG GLG+ IAQ I++   G     S+  +G   I  L
Sbjct: 867 VQGTGLGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 904


>gi|149914194|ref|ZP_01902725.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149811713|gb|EDM71546.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 482

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 182/444 (40%), Gaps = 33/444 (7%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN-SDIKIGEVYVWRIWLLVGQI 115
           L    +  ++    +  +     L     +L L ++V             + +W++V   
Sbjct: 43  LAAMILSAFYFDPALALVCYSGLLFSEVLDLVLTRRVQRWEGNDPIAARRFLVWVMVNTG 102

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF------LSFFP 169
              +  +L  L+           +        AL  +  ++ +LP  +        +F  
Sbjct: 103 MSAVMISLFVLLIAIQQNSGGHFMPLFFLFAAALFAAMNNHQILPSLILRLMIYGATFLT 162

Query: 170 VVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           + V    +    + S H L+      +   +   +++   L++  +K L           
Sbjct: 163 ISVMDIVRLRPPLDSHHWLEFFTVAFVLYFIVDCSFVFLKLYRKGLKQLQ---------- 212

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                K   +    RA+     KS+FL++MSHELRTPL +I    +++    +  + ++ 
Sbjct: 213 -----KIKLEH--DRAKRAYEIKSQFLSTMSHELRTPLTSIKFSLDLMNSGCVAQVPDD- 264

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K  +    ++   L  LINE LDL +IE+G       ++ +  +V E +  +  +A  +
Sbjct: 265 LKPILEIAVKNSNRLAELINETLDLQKIESGEMIFRFQSLDISRVVSESVDAIMAQANAE 324

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            IE+ ++       +  DE  ++QV+ NLLSNA+KF+  GG + V V   +     +S++
Sbjct: 325 QIEVRKEFPEDEVFINGDEARIQQVLGNLLSNALKFSEAGGVITVRVEQ-NNDRVRVSVQ 383

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E     V   F Q   + +    G GLG+ I++ I+  H G    +S+L EG 
Sbjct: 384 DTGTGIPENCEAQVFGRFSQVDSSDRRKVGGTGLGMNISKRIIERHNGTIHYKSRLGEGT 443

Query: 467 EVIAILPNTRVLNFIPEDNHESTQ 490
                    R     PE NH++ Q
Sbjct: 444 TFFLEFDLKR----QPERNHDAAQ 463


>gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
 gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I     L   + +S +       A  LS     +A+  +      +  +  A + A   
Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406

Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245
           +    +          +        +   +   ++L  A    +E        R  AE+ 
Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++
Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  +V +   ++  RAQEK +     I+  +S  W  D
Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++           + D G GI++ +  T+  +
Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F Q    +     G GLGL I++ I+   GG   + S+  EG      +P      
Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697


>gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 854

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 15/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------------ENLAK 249
           + + L+K +V+    QAE+D   ++  + ++L    ++ AE                  K
Sbjct: 420 LAFALYKIDVEDERGQAERDLQHSQQLLTEALDALEQRVAERTRELSIANLNLAHAARVK 479

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             FLA+MSHELRTPLNAILG +E+      GPL++   K  +  I  SG+HLL LIN++L
Sbjct: 480 DEFLANMSHELRTPLNAILGRTEMCLDGFYGPLSDGATK-ALHTIEESGRHLLELINDVL 538

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+++IE+G  +L    I++ ++    + ++  +A +K+I I Q+IDP +  + AD + ++
Sbjct: 539 DVAKIESGHADLELQLIAVDEVCAASLRLISQQALKKHIHINQEIDPQVDLIHADARRIK 598

Query: 370 QVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           Q+++NLL+NAVKFT  GG + +TV G       +  + D G GIA  +I  +   F Q  
Sbjct: 599 QILINLLNNAVKFTPQGGNIGLTVTGDREQDLVHFIVWDTGIGIAPDQIGRLFQPFTQID 658

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            ++  A +G GLGL +  S++  HGG   + S L  G     +LP  RV    
Sbjct: 659 SSLSRAHEGTGLGLHLVASLVRLHGGSVQVESTLGTGSRFSFMLPWKRVNAES 711


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1295

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A  LA +          L  SN ++        +   EL+ A+   +E  +  E     K
Sbjct: 512 ARALAASEERLQVQQEELRVSNEELEERSRSLAEKNRELQKARQELEEKARALEISGRYK 571

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN+IL  S+++     G L      EY   I+ SG  LLNLINE+L
Sbjct: 572 SEFLANMSHELRTPLNSILILSQMLATNKQGNLL-PRQLEYATTINNSGSDLLNLINEVL 630

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IEAGR +++   ++L  ++   +   +  A+EK + +  ++   L   +++DE  +
Sbjct: 631 DLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEKQLTLVGELADDLPVTIYSDETRL 690

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------------YISIKDNGPGIAEGE 416
            Q++ NLLSNA+KFTA  G V +T+G                      ++D G GIA  +
Sbjct: 691 GQILKNLLSNALKFTAE-GEVKITIGRPENDKLPPGLKLNPARTLVFQVRDTGIGIAADK 749

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  V  +F Q          G GLGL I++ +    GG+    S+  EG      LP
Sbjct: 750 LEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELTAASRAGEGSVFTLWLP 806


>gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB]
 gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 853

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 9/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E + A+    E ++ AE+   AKS FLA+MSHE+RTP+NAILG + ++         N
Sbjct: 450 ISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTDAALN 509

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E     +  I  SG+HLL++I++ILDLS+IEAG+  L E+ + L  ++ E   ML+ RAQ
Sbjct: 510 EP----LERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQ 565

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           EKN+ +  +      +V  D   +RQ ++N  +NA+KFT   G + +             
Sbjct: 566 EKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFT-DHGAITLRSRVIEENDESIL 624

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI+   +  + T F Q   +      G GLGL I + +    GG     S
Sbjct: 625 VRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAES 684

Query: 461 KLREGVEVIAI 471
            L +G      
Sbjct: 685 SLGKGSLFWIT 695


>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1624

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 10/262 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + + A+      ++ AEE    KS FLA+MSHE+RTP+NAI+G S +     + P   
Sbjct: 851  ITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTP--- 907

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+  I ++GQHLL +IN+ILD SRIEAG+  + +    L  ++     ++  +A 
Sbjct: 908  -RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKAG 966

Query: 345  EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
             K +E+   + P     +  D   + Q+++N  +NA+KFT   G +HV V      G+  
Sbjct: 967  VKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTER-GEIHVRVRVVERHGRRV 1025

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G G+A  ++  +  SF Q   +      G GLGL I++++    GG+    
Sbjct: 1026 LLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGAE 1085

Query: 460  SKLREGVEVIAILPNTRVLNFI 481
            S + EG     +LP     + +
Sbjct: 1086 SAVGEGSTFWVMLPLECAESAL 1107


>gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1068

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 16/362 (4%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +++  +  LL+ ++    +  +   A  L      ++              +    +   
Sbjct: 451 MSMILALMLLVCMASRIATKALSLTAFRLRQVTEQLSWQISRGTMPVWPAPTFLREIDAL 510

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +    +   L ++       +   + L   +E       + ++ AE  N AKSRFLA M
Sbjct: 511 SNNVKEMAESLGQTF---FELKTVNEQLEKRIEERTKELADAKQAAEAANEAKSRFLAVM 567

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N I+G + +++   + P      +E +G    S   LL +IN+ILD S+IEA
Sbjct: 568 SHEIRTPMNGIMGINNLLKQSQLTP----DQRELLGYASDSADALLLIINDILDFSKIEA 623

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            + EL  S   L  ++     M QL A +K + +    D  L   V  D+  +RQV+ NL
Sbjct: 624 NKLELCPSVFRLGRLMESLCNMYQLVADKKGLRLVCDYDRELPELVTGDQDRLRQVLTNL 683

Query: 376 LSNAVKFTAIGGRVHVTVGW----TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSI 429
           L+NA+KFT   G V + V      ++     I   + D+G GIA  +   +   F Q   
Sbjct: 684 LNNAIKFTRQ-GEVRLWVHRLSSSSADGMLRIAFQVTDSGIGIAPEKQERIFDMFSQADS 742

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           +      G GLGL I +S++   GG   + S    G      LP +     + E   E  
Sbjct: 743 STTREFGGTGLGLAICKSLVGLMGGTIQVTSTPGVGSTFRVELPFSPAA-GLAEAEGEGG 801

Query: 490 QY 491
           Q 
Sbjct: 802 QI 803


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1222

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 141/282 (50%), Gaps = 14/282 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L+ A       ++ AE+    K  FLA+MSHE+RTP+N ++G  +++    +   
Sbjct: 690 RDITFLKKASQELYHAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNETPLM-- 747

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  ++Y+  I +S + LLN++N+ILDLS+IEAG+ +L  + IS+   V +   +   +
Sbjct: 748 --EEQRKYVQTIKKSSETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQ 805

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG-- 398
           A  KNI++   ID ++  V  ADE  + Q++ NL SNA+KFT  G  R+ +++       
Sbjct: 806 ATLKNIDLLYSIDSNVPKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLV 865

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++I D G GIA+ ++  +   F Q   +   +  G GLGL I++ +     G+  +
Sbjct: 866 NKIRVNISDTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGV 925

Query: 459 RSKLREGVEVIAILPN---TRVLNF---IPEDNHESTQYKCY 494
           +++  +G             R++      P        +K Y
Sbjct: 926 QTEANKGSVFWFTFEANESKRLVEAKVETPNAFSSEKTFKDY 967


>gi|315126766|ref|YP_004068769.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp.
           SM9913]
 gi|315015280|gb|ADT68618.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp.
           SM9913]
          Length = 894

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 186/438 (42%), Gaps = 16/438 (3%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPM------WSLITLA--VYAANLSLGKKVM 94
           ++    +     +VL  +        + IF        W   TL         +   K+ 
Sbjct: 212 KTHLHYALFTACWVLAWSQFFHI--PDQIFGFYNAHFHWLGFTLIPITNILFFNSLLKLK 269

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
            +  ++    ++   +        + W     +     T   L +     +   LS    
Sbjct: 270 ETSPQLSRFSIYLGIIATAGTPFAIIWPGFGFIWATLVTGATLCLGMIVGIRSWLSGFKP 329

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           + + +   + ++   +V  L+   ++    +D+ L G++ TAL           K ++  
Sbjct: 330 ARYFVLAYLAMAIPNMVGNLTNLGLIEPIKIDLYLLGLIGTALDAVLLAFAVANKFSILH 389

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                   +L  ++++      +  +   + + AKSRFLA+MSHE+RTP+ +I+G+++ I
Sbjct: 390 HENVELTKNLEHKVQLRTQELQQLAEELRDASEAKSRFLANMSHEIRTPMTSIIGYADGI 449

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +G +        I  I ++ +H+L LIN+ILD+S+IEA R E+      L   + E
Sbjct: 450 ---ILGDIQPHERNHGIRVILQNSRHVLGLINDILDMSKIEANRLEIELVETDLFATIAE 506

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +L  + ++K ++        L   + +D   +RQ++LNL +NA+KFT+  G + +TV
Sbjct: 507 IESLLGKQIRDKGLKFKVDYQFPLPDWIVSDPTRLRQILLNLATNALKFTSQ-GYIKLTV 565

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   I +KD G G+ + E   + T F Q   +I     G GLGL I++S+     
Sbjct: 566 SCNKKQ-LIIKVKDTGIGMTDSEQKDLFTPFHQADSSISRKYGGTGLGLNISKSLATKLD 624

Query: 454 GQFLIRSKLREGVEVIAI 471
           G   + S L  G E    
Sbjct: 625 GDITVYSVLGSGSEFCFT 642


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1078

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            +A+ +M +        LA+    ++Y+     +   +++    E D  I EL+  ++  
Sbjct: 632 AEALSAMSLFHAEARFRLASGKVRWSYLASAPRRIGDRVVWDGVEID--ITELKKTEAAL 689

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E ++ AE  N  K+ FLA+MSHE+RTPLN ILG  +++   ++        ++Y+    
Sbjct: 690 LEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQTSL----EPEQEKYVELSI 745

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S   L  L+ +ILD+SRIEAG+  L  +  S  ++V   + +  + A+EK + +   I 
Sbjct: 746 TSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPAREKGLRLRCAIH 805

Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409
           P L  +   DE  +RQ++ NL+ NA+K+T   G + + +              I + D G
Sbjct: 806 PGLPPLLVGDEARVRQILFNLVGNALKYTEQ-GDITLELFARDADLCRSECMCIRVVDTG 864

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  V   F Q   +   + +G GLGL I Q ++    G+  ++S+   G  V+
Sbjct: 865 VGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEISVQSEPGAGTAVL 924

Query: 470 AILPNTRVLNF-IPEDNHES 488
             LP      + IP+D  ES
Sbjct: 925 VSLPLRAASEYCIPQDVAES 944


>gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1051

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 20/300 (6%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +       L    ++ +L A+ +   +        A   N AKS FLA+MSHELRTPLN
Sbjct: 524 KVVSQIANQLGVAVKQAELFAQTQQQAAELKRVADAANVANRAKSEFLANMSHELRTPLN 583

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF+++++ +         ++EYI  +++SGQHLL LIN++L++S+IEAGR   + + 
Sbjct: 584 AILGFTQLLQRDR---TLAAKHQEYIKIVNQSGQHLLELINDVLEMSKIEAGRITCNPTE 640

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             +   +    +MLQL+A+ K + +  +++ S+   V  DE  +RQV++NL+SNA+KFT 
Sbjct: 641 FDIKRCLPAIQVMLQLKAESKGLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFT- 699

Query: 385 IGGRVHVTVG--------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
             G V + V               W S       I D G GIA  EI  +  +F Q    
Sbjct: 700 QDGEVSLRVSVGGVDEDLGLSDEDWVSNTYLLFEIIDTGCGIASEEINDLFQAFKQTKAG 759

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            +S  QG GLGL I+Q  +   GG+  + SK  EG      +P       + E   +  Q
Sbjct: 760 RESQ-QGTGLGLVISQRFVNLMGGEIKVSSKPGEGSCFSFQIPVGVADQMVDESESKLNQ 818


>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
 gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
          Length = 1118

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+    E ++ AE+   AKS FLA+MSHE+RTP+N +LG   +I+   +    ++    
Sbjct: 588 EAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKL----DQQQAH 643

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +I     S + LLN+IN+ILD S++EAG+  +     +L  ++ E +    L+ ++ N +
Sbjct: 644 HIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPKLLGEVVESFALKVEQNNTK 703

Query: 350 IFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--SIK 406
           +       ++S + +D   +RQ++ NL+ NAVKFT  G  + +     S  G ++  S+ 
Sbjct: 704 LILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAFLECSVI 763

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI + +  ++  SF Q   +      G GLGL I + +     G   + S   EG 
Sbjct: 764 DTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNSVEGEGS 823

Query: 467 EVIAIL---PNTRVLNFIP 482
                +   P       +P
Sbjct: 824 TFSFSVKIQPRLSKEQDLP 842


>gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
 gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/267 (37%), Positives = 144/267 (53%), Gaps = 7/267 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           DL    E  +    E    AE  N AKS FL+SMSHELRTPLN+ILGFS+++  +   PL
Sbjct: 291 DLTDLHESQRRELAE----AERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPL 346

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +  +  I RSGQHLL LIN+ILDLSRIEAGR  +S         + EC  M++  
Sbjct: 347 -PERQQRQVEHIERSGQHLLALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGE 405

Query: 343 AQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+E+ I++     +P+L +V AD   ++QV+LNL+SNA+K+    G V V V        
Sbjct: 406 ARERGIQLDFPPPEPALPAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRM 465

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GI E     +   F +       A QG G+GL I++ ++ + GG+   +S+
Sbjct: 466 EFRVRDTGLGIPEDRRAELFRPFSRLGH-ETGAIQGSGIGLVISRELVRHMGGELEYQSR 524

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG +    LP +     +   +H +
Sbjct: 525 EGEGTDFFFTLPMSCTAERLTTQDHAT 551


>gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
 gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
          Length = 1034

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 123/251 (49%), Gaps = 12/251 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E +  +      R++A+E +  KS FLA+MSHE+RTPLNAI+GFS ++        N
Sbjct: 648 LITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLL----TATEN 703

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               KE+I  I  + Q LL L++ ILDLS+IEA   E +   + L  + ++    ++ R 
Sbjct: 704 ETERKEFISIIETNNQLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL 763

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  + +    +  +  V  +   + QV++NLL NA KFT   G +        G   Y 
Sbjct: 764 -QTGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEK-GEIMFGYKIR-GEELYF 820

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            +KD G GI+      +   F +      +  QG GLGL I ++I+    G+  + S+  
Sbjct: 821 YVKDTGIGISLENQKKIFERFTKV----NTFIQGTGLGLSICKNIVTKMKGRIGVESEGE 876

Query: 463 REGVEVIAILP 473
            +G      +P
Sbjct: 877 GKGSTFWFTIP 887


>gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
 gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
          Length = 878

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217
           AV      +VV L      S      S    +   L+          K     + ++   
Sbjct: 288 AVISFGVALVVILLCWLGFSTWFRVNSKLDAIIHTLNALINSEEKQTKVKVDGSDELTIF 347

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             + + ++ E++         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++   
Sbjct: 348 AQQVNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 407

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        +E + DI  S Q LL L+N+ILDLS+IE+GR ELS     + ++V + +I
Sbjct: 408 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMI 463

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           + Q +A  K +++   +  ++   V  D+  ++QV+ NL+SNAVKFT   G V V V + 
Sbjct: 464 LFQSKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFT-ESGHVCVDVSYE 522

Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        ++D G GI + ++ T+   F Q    +     G GLGL I   +++ 
Sbjct: 523 ELLEKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSM 582

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG+ +  S    G      +
Sbjct: 583 MGGKLVATSTKGVGTCFEFSI 603


>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
 gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
          Length = 1072

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
             ++      +     +L      +        S+      +I  L N  LP A+     
Sbjct: 165 RTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +AL  Q  +     ++         +        + L  +    L  +      +  
Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +   ++ + +AEE    KS FLA+MSHE+RTP+NAI+G S +     + P      
Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+  IH S   LL +IN+ILD S+IEAG+  +  +   L D+     ++   +A EK 
Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
           +E+   +       +  D   + Q+I+NL++N+VKFT   G + V+V             
Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D G G+ + ++ ++ T+F Q   +      G GLGL I + ++   GGQ  + S+ 
Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513

Query: 463 REGVEVIA 470
            +G   I 
Sbjct: 514 GKGSHFIF 521


>gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1135

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 12/276 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   L                 +      ++     ++ A++ N AK  FLA+MSHE+RT
Sbjct: 544 LEATLAGWREGDRRYVTGALRDVTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRT 603

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N +LG   +      GP  N+  ++ +   +RSG  LL +I++ILDLS++EAG+ E+ 
Sbjct: 604 PMNGVLGALAL----VEGPNLNDEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVE 659

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                L  ++R+ I +L+  A  + + + Q+++P++   V AD + +RQV++NL+ NA+K
Sbjct: 660 PVDFELRAVLRDSIDLLEPAACGRGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALK 719

Query: 382 FTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           FT  GG V V VG                + D G GI E   PT+   F Q   +     
Sbjct: 720 FTNRGG-VAVRVGLEGDAVADGSFLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRF 778

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            G GLGL I++ ++   GG   + S   +G      
Sbjct: 779 GGTGLGLAISRELVTLMGGTIGVASAEGKGSTFWFT 814


>gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 910

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 7/249 (2%)

Query: 231 AKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           A    D  R   +A E N  K  FLA++SHELRTPLNAILG+++++    +   + E+  
Sbjct: 654 AAIAIDNARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKL---DAESQA 710

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I R+G+    LI +ILD+SRI  G+ +L    + L  ++ E +  + L ++ K+I
Sbjct: 711 RALETIERNGRAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHI 770

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +D   +SV  D   ++QV+ NLLSNA+KFT  GGR+ V +    G    +S++D+
Sbjct: 771 ALHCTLDAEAASVSGDPARLQQVVWNLLSNAIKFTPEGGRIDVRLAA-DGASALLSVRDS 829

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467
           G GI    +P +   F Q   +   A  G+GLGL I + ++  HGG     S     G  
Sbjct: 830 GVGITPEALPYIFERFRQADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGAL 889

Query: 468 VIAILPNTR 476
               LP  R
Sbjct: 890 FAVRLPRRR 898


>gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 847

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515


>gi|310790716|gb|EFQ26249.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1303

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 15/266 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 689 ELKRKINQMVSNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 748

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 749 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 804

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 805 LKTLAVKANEKYLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 863

Query: 395 WTS---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                              + D G GIA  ++  +  +F Q   ++     G GLGL I+
Sbjct: 864 KADPVVWACNPDQYAIEFIVTDTGIGIAADKLDLIFDTFQQADGSMTRKFGGTGLGLSIS 923

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GG   ++S+  +G E    
Sbjct: 924 KRLVKLMGGDLWVKSQHGQGSEFHFT 949


>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 976

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 23/338 (6%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A S  A  +  +   +   F    V +    +   H L  ++A   +            
Sbjct: 232 VATSRMATGDAAVKRTLLAGFSTAGVVVLLLFLWGGHALLQNIARRDS---------AEK 282

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             ++    L  + E+    ++L  A+  +   +++AEE + AKS FLA MSHE+RTP+NA
Sbjct: 283 ELRAFAATLESKVEQR--TSDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNA 340

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG + +    T           Y+  I  +G+ LL +IN+ILD+S+IEAG+  L   A 
Sbjct: 341 ILGITYLCLQTTHEN----KQLYYLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAF 396

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L ++V     +       KNIE+   +DP++  +V  D   + QV+ NLL NAVKFT  
Sbjct: 397 ALQELVENLSDLCGALVGGKNIEVLFHVDPNVFVTVEGDLLRLTQVLTNLLGNAVKFTEK 456

Query: 386 GGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            GRV + +             IS+ D G G+ E E+  +   F Q   +I     G GLG
Sbjct: 457 -GRVVLRIEELGRGADTITLGISVSDTGIGLTEEELARLFKPFEQADGSITRRYGGTGLG 515

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRV 477
           L I Q  +   GG+  +RS+  +G        LP   V
Sbjct: 516 LVICQRFVRMMGGELEVRSEPGKGSAFSFSLTLPYRPV 553


>gi|239995384|ref|ZP_04715908.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           ATCC 27126]
          Length = 707

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 28/315 (8%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           +   +LA +   A   F+ +   + +S  K          L +  E A+S +DE R+   
Sbjct: 168 LWLATLALLCIEAAFIFSPMERTVKRSFAK----------LTSLKEQAESSADEARR--- 214

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + AKS FL+SMSHELRTP+N + G  E+         N +    Y+     +G+ LL 
Sbjct: 215 -ASKAKSEFLSSMSHELRTPMNGLFGMIELAID------NPDKSNIYLKKAKTAGRQLLV 267

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362
           LIN+ILD+S+IEAG+ ++ ++ + L+ ++ + + + ++  Q K +E     DP L  V  
Sbjct: 268 LINDILDISKIEAGKIKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHVIK 327

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPT 419
            D   + Q++ NLLSNA+KFT   G V + V +T    G      + D G GI   ++  
Sbjct: 328 GDITRISQILHNLLSNAIKFTEQ-GSVTLKVTYTKRPNGNYLSFDVIDTGIGIESSKLDN 386

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q   +      G GLGL IA+ +     G   + S + +G             +
Sbjct: 387 IFKKFEQADQSTTREYGGTGLGLSIAKQLAKLMLGDINVTSFVGQGSTFSFT--MAAEES 444

Query: 480 FIPEDNHE-STQYKC 493
            +P+ N E S   +C
Sbjct: 445 QLPDINVEPSANLRC 459


>gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 865

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 130/269 (48%), Gaps = 12/269 (4%)

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           I+E ++A+   D         RK AE  N  K  FLA +SHELRTPLN ILG+S+++   
Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  +     +  I R+      LI ++LD+SRI  G+  L+   +SL  ++   I 
Sbjct: 523 QFDAATTD---RALETIERNATLQTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAID 579

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++L A+ K I+I    DP L  V  D   ++QV+ NLLSNAVKFT+ GG V + +   +
Sbjct: 580 TVRLAAEAKEIKIQNVFDPELGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVN 639

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            + Q I + D G GI    +P V   F Q          G+GLGL I + ++  HGG   
Sbjct: 640 DQAQ-IQVIDTGKGITPEFLPYVFDYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQ 698

Query: 458 IRSK-LREGVEVIAILPNTRVLNFIPEDN 485
             S     G      LP +     +  ++
Sbjct: 699 ATSPGEGLGATFTVNLPLSPKHEAMNHED 727


>gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 657

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 21/274 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+V +    + +  AEE N AKS FLA+MSHE+RTP+N +LG  E+  +        
Sbjct: 249 ITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGVLGMIELALMRR----PT 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+    +SGQ LL +IN+ILDLS+IEAG   + E   +   ++      + L A+
Sbjct: 305 SKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNPRAMLESLFATMSLAAE 364

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           +K +E    +  +LSS+   DE  +RQV+ N++ NA+KFT   G + V++    G     
Sbjct: 365 QKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQ-GEIAVSIDVPRGEKWRD 423

Query: 403 -----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                       SI+D G GI    +  +  SF Q          G GLGL I++ ++  
Sbjct: 424 ICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQV-NGRNYEFGGTGLGLAISRQLVEM 482

Query: 452 HGGQFLIRSKLREGVEVIAILPNT--RVLNFIPE 483
            GG+  + S+  +G     ++P          PE
Sbjct: 483 MGGKIWVESEPGKGSLFTFVVPLEALEAEPVAPE 516


>gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 1049

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 13/252 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I E +  +      R RAEE N  K+ FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 664 QVITERKRMEQELLSARDRAEESNRLKTAFLANMSHEIRTPLNAIVGFSAILAST----D 719

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  +EY+  I  +   LL LI +ILDLS+IEAG  +   +   L +++RE   +++++
Sbjct: 720 EEQEKQEYVSIIENNNALLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMK 779

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +E  +E+  +      SV  D   + QVI+NLL+NA KFT  G    +  G+    R  
Sbjct: 780 VRE-GVELLFEQKYEQCSVCTDRNRLSQVIINLLTNAAKFTQTGS---IRFGYEMRDREL 835

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI   +   V   F +      + +QG GLGL I + I+ + GG+  + S+
Sbjct: 836 YFWVSDTGSGIPADKTEQVFERFVKL----NTFKQGTGLGLSICKMIVEHLGGRIGVESE 891

Query: 462 LREGVEVIAILP 473
             +G +   ILP
Sbjct: 892 EGKGSKFWFILP 903


>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
 gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
          Length = 897

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K A E N AKS FLA+MSHE+RTP+N ILG +++     +        +EY+  +  S Q
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL++IN+ILD SRIE+G+ ++ E  + +   ++  I      A EK IE+   I P++ 
Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374

Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            V   D   +RQ++ NLL NA+KFT  G  +               I+D G GIA  +  
Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +F Q   +      G GLGL I+  +++  GG+ ++ S+   G E    LP  
Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPLE 491


>gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1666

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 163/334 (48%), Gaps = 18/334 (5%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAE 227
            VV                 +  + +        +     +  V+ ++   E+      A 
Sbjct: 1113 VVAIFVFYCREFREQDHYLIELVCSLGEQLALTLQRRRIEQEVREVNQHLEERVKARTAA 1172

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            LE+      +++  A+  NLAKS+FLA MSHELRTPLN ILG++++++         E  
Sbjct: 1173 LELTNQALKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQR---DQTLTEQQ 1229

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            ++ +  I++ G HLL+LIN+ILDL++IEA + +L  + + L   + E  +++  RA  K 
Sbjct: 1230 QQSLEIIYKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIAVIIHPRATGKG 1289

Query: 348  IEIFQKIDPSLSSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------ 399
            +      DP LS+++   D K +RQ++LNLLSNAVKFT   G V + V   S        
Sbjct: 1290 LTWTYFTDPQLSNLFCLVDSKRLRQILLNLLSNAVKFTDT-GEVILEVEVISPFTNSNPY 1348

Query: 400  -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  +KD G GI   +I ++   F QG+ A K   +G GLGL I Q ++   G +  +
Sbjct: 1349 VTLRFKVKDTGIGIPSEKIESLFQPFEQGTEAYK-QSEGTGLGLTITQKLLEMMGAKLEV 1407

Query: 459  RSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQ 490
             S+  +G        LP    ++F   +  ES++
Sbjct: 1408 ESQYNQGSLFRFDLQLPIVEGVDFPNGEASESSE 1441


>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 988

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +    +A+     AEL    +   ++++ A E   AKS FLA+MSHE+RTP+N I+
Sbjct: 582 DTLQRAAELEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGII 641

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + +               +Y+  I  + + LL +IN+ILD S++E+G+ +  E   +L
Sbjct: 642 GLTYLALQREC----PAAIADYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTL 697

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            +++   + M     +EK + +   +   +   +  D   + Q++LNL+ NA+KFT  G 
Sbjct: 698 SEVLDNTLQMFTHAVREKGLSLRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGS 757

Query: 388 -RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             + V    T  +      +++D G GI   ++P++   F Q  +++     G GLGL I
Sbjct: 758 VTLFVRCVETDQQTVTLGFAVRDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAI 817

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           A+ ++ + GG   +RS + +G      L   R    +      + 
Sbjct: 818 ARVLVQHMGGTIHVRSVVGKGSTFSFTLRFRRPAAVLKGAESTAP 862


>gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010]
 gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010]
          Length = 994

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  +++    R  AE  N ++  FLA+MSHE+RTP+N ++G   ++    +    +
Sbjct: 456 ISEHKQVEAILKTERDDAESANRSRGEFLANMSHEIRTPINGVMGAMNLLADTPL----S 511

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +    RS + LL +IN+ILDLS+IE+G+ E+ E  ++L++ + +   +L  +A+
Sbjct: 512 ASQHNLLNISKRSAESLLGIINDILDLSKIESGKLEIIEEEVALVNTLCDVARLLSAKAE 571

Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
            K+IE+          SV  D   +RQV+ NLL+NA+KFT  G     V V    +    
Sbjct: 572 SKHIELLCPAHYLDEVSVKVDGLRLRQVLTNLLNNAIKFTEQGSVKLSVDVLSQTSDKLK 631

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++ D G GIA  +   +   F Q   ++   E G GLGL I++ ++   GG   + S
Sbjct: 632 LRFNVVDTGQGIAADQQALLFQRFQQVDSSLTRREGGSGLGLSISKQLVELMGGTIGVES 691

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +L  G      L   +     P
Sbjct: 692 ELGIGSRFWFELDLMKATQNQP 713


>gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 577

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + ++    K+ L   +++        ++ AE+ N +KS+FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAINDIEHKEALQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  +     ++   ++ +  +  S + LL +IN+ILDLSRIE+G +EL    
Sbjct: 227 AVLGLIDLLRDD-----SDAYQQDMLEQMENSAELLLVIINDILDLSRIESGHFELQRHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           ISL   ++  +      AQ K+I    K         W D   + Q++ N++ NA+KFT 
Sbjct: 282 ISLSRKLQHALEYHSQVAQAKDITFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTH 341

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V V++  T+     I +KD+G GI    I  + + F Q   +I     G GLGL I
Sbjct: 342 H-GFVDVSL-VTARDRLEIEVKDSGIGIDNERIEHLFSPFIQADTSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + ++   GG   + SKL EG      +P  
Sbjct: 400 TKHLVELMGGSITVSSKLGEGSLFTISIPLQ 430


>gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 939

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE  K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 514 ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 569

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   +  + + LL LINEILDLS+IE+G  E + + I++  + +E       R  
Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  +++  +   +   +  D+  + QV  NL+ NA KFT  G    ++ G+   G     
Sbjct: 630 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 685

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   +I  V   F + +       QG GLGL I ++I+   GG+  + S + 
Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 741

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP         E + E+T+
Sbjct: 742 QGTTFTFTLPYES------EQSTENTK 762


>gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1336

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I ELE  K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 911  ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 966

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E  K +   +  + + LL LINEILDLS+IE+G  E + + I++  + +E       R  
Sbjct: 967  EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 1026

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
            +  +++  +   +   +  D+  + QV  NL+ NA KFT  G    ++ G+   G     
Sbjct: 1027 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 1082

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +I  V   F + +       QG GLGL I ++I+   GG+  + S + 
Sbjct: 1083 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 1138

Query: 464  EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            +G      LP         E + E+T+
Sbjct: 1139 QGTTFTFTLPYES------EQSTENTK 1159


>gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1098

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+       + A   + AKS FLA+MSHE+RTP+N ++G   ++    +    N
Sbjct: 413 ITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETEL----N 468

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  I  S   LL++IN+ILD S+IEAG+  L    + L  ++   + +L L+A 
Sbjct: 469 TEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQAS 528

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGR 399
            K IE++   D +L  V  +D   + QV+LN++ NAVKFT       G+V V+       
Sbjct: 529 NKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSNDDVKGKVWVSATLNDHE 588

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I ++DNG G+ E ++  +  +F Q   +      G GLGL I  S++   GG  
Sbjct: 589 IAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTGLGLSITNSLLELMGGNI 648

Query: 457 LIRSKLREGVEVIAILPNTRVLNFI 481
            + S    G      LP     +  
Sbjct: 649 KVDSHHGSGSRFYIELPFIPAEDEP 673


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 10/239 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA+MSHE+RTP+NA++G + ++    +    N   ++++  I  SG  LL +IN
Sbjct: 658 RAKSDFLATMSHEIRTPMNAVIGMTGLLLDTPL----NAEQRDFVETIRNSGDALLTIIN 713

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S+IE+G++EL +    L D +   + ++  RA EK I++   I  ++   +  D 
Sbjct: 714 DILDFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDV 773

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLT 422
             +RQ+++NLL+NAVKFT  G  V  +       +    +I+++D G GI    +  +  
Sbjct: 774 TRVRQILVNLLANAVKFTPAGEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFK 833

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLN 479
           +F Q   +      G GLGL I+Q + A  GG+  + S +  G      +  P      
Sbjct: 834 AFSQVDASTTRQYGGTGLGLAISQRLCALMGGRMWVESTVGVGSTFHFTIIAPAAESPQ 892


>gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 810

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 11/273 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +    ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+
Sbjct: 544 INVVVRDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG + 
Sbjct: 603 RTPLNAIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
              + + + +   E I  + ++   K +E+  +       ++ D+    QVI N ++NA+
Sbjct: 659 FVYTNVDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNAL 717

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT   G + +       +     ++D G GI E +  +V   F +      +  QG GL
Sbjct: 718 KFTQQ-GSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGL 772

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I +SI++  GG+  + S    G       P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 791

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 135/253 (53%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +      ++ AE  N+AK  FLA+MSHE+RTPLN I+GF+E++    +     
Sbjct: 383 LTETKKIEYTLRYAKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELLLNSPL----Q 438

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY+ +I  SG+ LL L+N+ILD S+I++G+ E      +LID+V+  + + Q+ A 
Sbjct: 439 EEQKEYLKNIFFSGKSLLELVNQILDFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAA 498

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            K I +  +IDP+L   V  D   +RQ++ NL+ NA+KFT   G V V++      G Y 
Sbjct: 499 SKGIALHIQIDPNLPKYVSLDPLRIRQILSNLIGNAIKFTHE-GSVKVSLQQMERNGDYV 557

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI       +  SF Q   +I     G GLGL I   ++     +  I+
Sbjct: 558 TISFEVSDTGIGIDMNVGSRLFDSFSQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQ 617

Query: 460 SKLREGVEVIAIL 472
           S+L +G +    L
Sbjct: 618 SELGKGSQFSFPL 630


>gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
 gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
          Length = 1000

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/462 (23%), Positives = 185/462 (40%), Gaps = 36/462 (7%)

Query: 50  PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN--LSLGKKVMNSDIKIGEVYV-- 105
                  L    +       PI+   + I +   A     +L  ++     +  E     
Sbjct: 422 LTTIGGALQTLALLKVLPSAPIYLAATPIGILSGAVMISFALADRIKRMQKEALEANERA 481

Query: 106 ----WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT-LLIALSISAL------ 154
                R          G+    +              +   +   LIA    A+      
Sbjct: 482 VQNMARYRSTFNNAIEGMYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPG 541

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +  L    F     +    + +   S+ V     + M+  A    ++I   L     + 
Sbjct: 542 GDGQLQQLAFAGKLQLETCYTGKNGKSIWVDH--FSQMIRGANGLPSHIEGSLTDITERK 599

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              +AE+D  I +LE         ++ A     AK  FLA+MSHELRTPL AI+G+SE +
Sbjct: 600 ERERAEQDREIDKLE---------KELATASATAKGDFLANMSHELRTPLTAIIGYSESL 650

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             +++   +    ++ +  I RS  HLLN+IN+ILD S++EA   E+    ++   ++++
Sbjct: 651 NDQSLSATDE---QQAVDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLKD 707

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                  +A+ +N+         L   + AD   ++Q++LNL SNA+KFT   G V + V
Sbjct: 708 VYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKE-GSVTIDV 766

Query: 394 GWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           GW   R     S+ D G G++E +I  +  S+ Q   +      G GLGL I++ +    
Sbjct: 767 GWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKM 826

Query: 453 GGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHESTQ 490
           GG   + S+  +G      +    PN R      E+   +T+
Sbjct: 827 GGTIEVTSEPGKGSCFTVYIGGNVPNRREWIENQEEATRATE 868


>gi|84385756|ref|ZP_00988786.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379072|gb|EAP95925.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 819

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 22/331 (6%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            +  + F V ++L      S  +       + A       ++        +   +   ++
Sbjct: 198 LILGTLFSVFISLLVATWSSKRIKRRLHTLLKAANQVAAGHLKQGAATLELGSKNDSQDE 257

Query: 222 DDLI---------------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             L+               +E+        E R +AE    AKS FL++MSHE+RTP+N 
Sbjct: 258 VALLTQSFQKMTTNLVKNDSEMREKNQELVEERTKAEAAVKAKSEFLSTMSHEIRTPMNG 317

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG S++I  +T         KE I  I  SG HL+ ++N+ILD S++E  + EL  +  
Sbjct: 318 VLGISQIIASQT----QEPETKENIDLILDSGHHLMTILNDILDFSKVEENKLELDFAPF 373

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +++     L+  A EK I +  + + P+   +  D   +RQ++ NL  NA KFT  
Sbjct: 374 NFVQVIQPVRSALKPLADEKGIRLLIENNIPTSIQLIGDCARLRQIMFNLGGNATKFTKE 433

Query: 386 GGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G V +            +++ D G GI +G+   +  SF Q   +      G GLGL I
Sbjct: 434 -GHVSIQADLNRPNNQLILTVTDTGIGIPKGKHEQIFNSFEQADTSTTRKFGGTGLGLAI 492

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +++++   G+  + S +  G +    LP  
Sbjct: 493 VKNLVSLMNGEITLTSAVGLGTKFQVSLPIA 523


>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Erwinia amylovora ATCC BAA-2158]
          Length = 924

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 21/295 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 242 GYMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRA 301

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T ++Y+  I RS  +LL
Sbjct: 302 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLL 357

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  L      L   + E +++L   A EK +E+   I   +    
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             D   M+Q+I+NLL NA+KFT   G + + V   +         + I D G GI+E + 
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 476

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F Q   +I     G GLGL I Q ++   GG+    S+L  G      +
Sbjct: 477 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531


>gi|311893920|dbj|BAJ26328.1| putative two-component hybrid sensor and regulator [Kitasatospora
           setae KM-6054]
          Length = 1247

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 130/357 (36%), Gaps = 8/357 (2%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L          P    +            +         A+        +      +   
Sbjct: 208 LAAASGVPDGHPAAPALIGPGQEGPWPVAAVRGGAPASVALPARGAFADLPRGAWEVPPR 267

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-RKR 241
               + L G      S F  +  +  +                    VA +   E  R+R
Sbjct: 268 QARVVPLNGPDGGGPSGFLVVGLNPHRPPDDGCLDFVGLVADRLAAGVASARGHEAQRRR 327

Query: 242 AE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           AE   E + AK+ F +++SHELRTPL  I G +E +         +   +E    IHR+ 
Sbjct: 328 AEQLAELDRAKTVFFSNISHELRTPLTLIAGPAEDLRRRLADA--DPDVREDAETIHRNA 385

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++ +LD SRIEAGR       + L  +  E   + +   Q   + +     P  
Sbjct: 386 LRLGRLVDTLLDFSRIEAGRMRARPRPVDLAAVTAELAAVFRPAVQRAGLTLEIDCPPLS 445

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           + V  D     +V+ NLL NA+KFT   G V V V         +S++D G G+   E+P
Sbjct: 446 APVAVDPGLWEKVVFNLLGNALKFTPE-GTVRVRV-RERDGRALVSVEDTGIGVPAAELP 503

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +   A   + +G G+GL +A+ ++  H G     S    G      LP  
Sbjct: 504 RLFDRFHRVEDARARSHEGSGIGLALAKELVELHDGTITAASTAGSGTTFTVDLPLA 560


>gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 609

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      +I  I    + ++
Sbjct: 371 EKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAW--QDKAIAPRFIEVIQTETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L++S ++  +   + I   +L  + +NI   +KI      + 
Sbjct: 429 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELT-KSENITFVRKIPKEAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG++   V   +     +S+ D G GI + ++  V  
Sbjct: 488 IDEDKITQVLDNIISNAIKYSPQGGKITFRVRELAD-EIIVSVSDEGVGIPKADLAKVFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLPLER 600


>gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1155

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 24/389 (6%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  ++V  +  G    ++ L      T   +   + +   IA++I+  ++      +   
Sbjct: 313 RNLIVVPAVYEGEVKAVIELGTFHELTDIQVDFMQQSVSSIAIAINTSASRSRLKVLVEE 372

Query: 167 FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILS-------C 217
                  L  Q        +     A  L  + +        L ++N ++          
Sbjct: 373 RQQQSEELQVQQEELRQTNEELEEQARALRDSEAKLQVQQEELRQTNEELEEKNRYLEKQ 432

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q +      ELE ++ + +E  +  E     KS FLA+MSHELRTPLN++L  S ++   
Sbjct: 433 QNDIKKKNEELEYSRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYEN 492

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L  E   E+   IH SG  LL LIN+ILDLS+IEAG+ +L    + + D+      
Sbjct: 493 KESNLT-EKQVEFARTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVER 551

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
            L+  A+EK +    ++  S+ S+   D + + Q+I NLLSNA+KFT+  G + + +G  
Sbjct: 552 NLRHMAEEKGLTFDIELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQ-GSICLKIGRP 610

Query: 396 -----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                              ++ D G GIA  ++  +   F Q          G GLGL I
Sbjct: 611 YSEAKLMRSDLDIRNTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSI 670

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++ ++   GG+  + S+   G      LP
Sbjct: 671 SRELVRCLGGEIQLESREGYGSTFTIYLP 699


>gi|116181786|ref|XP_001220742.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51]
 gi|88185818|gb|EAQ93286.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51]
          Length = 1270

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 14/265 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 650 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 709

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 710 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 765

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 766 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 824

Query: 395 WTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             S               + D G GI   ++  +  +F Q   ++     G GLGL I++
Sbjct: 825 KASAVQSGSMGEYAIEFIVADTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 884

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG   ++S+  +G +    
Sbjct: 885 RLVNLMGGDVWVKSEYGKGSKFYFT 909


>gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 588

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/441 (21%), Positives = 169/441 (38%), Gaps = 33/441 (7%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
             +   +   +        ++  L+A    +  Q     +   +     AA L     + 
Sbjct: 14  AYLAQAYAPVVSGAMLTGGVYYALIAVAHVFIEQGLSLAILPALAGVTSAALLLGCLYLR 73

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
            +  ++  +       L+   A GL    + + +  T+    L  +    L+ A +    
Sbjct: 74  RTPPRMVRLE------LITLGAFGLVNANVVIHQFLTFDEGRLVYFTFVALISATAAPT- 126

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
                      +    +  ++              A M   A      I+  +     + 
Sbjct: 127 -----RRTALFAVGGALAGMTVTGWRLGPAFIDLYAFMGLAAGFSALGISSLMRGVVSRA 181

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +  +   + L  E              A   + AKS FLA+MSHE+RTPLN +LG  +V+
Sbjct: 182 IEARLASERLSVE--------------AVAASRAKSAFLATMSHEIRTPLNGVLGMVQVM 227

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E   +G       ++++  I  S   L+ ++N++LD+S+IE G+ EL      L      
Sbjct: 228 ERGRLGV----RQRQHLAVIRESAGALMKVLNDVLDISKIEVGKLELHAQPFELGAFAEG 283

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +  + A+E+ +     ++      +  DE  +RQ++ NLLSNAVKFT   G V V+ 
Sbjct: 284 IGRLYAVLAEERGLSFRLSVEDAGHGRLIGDEARLRQIVSNLLSNAVKFTPE-GEVVVSF 342

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                R    +++D G GI   +   +   F Q       + +G GLGL I + ++   G
Sbjct: 343 AA-DDRSLTCAVRDTGIGIPAAQQAVIFDKFTQVDDGAARSFEGTGLGLAICRDLVELMG 401

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G+ L+ S   EG      +P 
Sbjct: 402 GEILVASTPGEGSTFTFRVPL 422


>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 767

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 158/361 (43%), Gaps = 17/361 (4%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
               + +    S  A  +  +  A   +   + +      +++  ++   L+ + A   +
Sbjct: 128 FGAISMVWSTASGQAAIDASVFQASLYTAITLGMLTLLFLLVTSVLVLRPLSLVHARLEA 187

Query: 199 FF---TYITYHLFKSNVKIL-SCQAEKDDL---IAELEVAKSLSDETRKRAEEENLAKSR 251
                      L +       +  A  D L   + E +  ++  +    +A+  N AKS 
Sbjct: 188 TMKGEIAQHRTLGRFAADEFWTFSASVDALEFSLTERDEREAELNAAMIKADAANKAKSE 247

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G ++++    +    ++    Y   I  SG  L+ +IN+ILD 
Sbjct: 248 FLANMSHEIRTPMNGVIGMAQLMLETDL----SDDQNLYANTIQSSGSALVEIINDILDY 303

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+I+AG+  L  +   L  + ++C  ++  +A  K +E+       L      D   +RQ
Sbjct: 304 SKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKGLEVVLDFSQDLPKGYIGDSGRVRQ 363

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQG 427
           +++N+L NA+KFT   G V   V       +    +SIKD G GI + ++ ++   F Q 
Sbjct: 364 ILMNILGNAIKFTEK-GSVEFAVNGIQSGDEIALELSIKDTGIGIPQNKLQSIFVPFEQA 422

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             A      G GLGL I   ++   GG   + S++ +G   I  +    +   +P+   E
Sbjct: 423 EGAKNRQFDGTGLGLAIVNHMVDLMGGSISVESEIGKGSVFILKI-ALPIAQNVPQQKRE 481

Query: 488 S 488
            
Sbjct: 482 K 482


>gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1006

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 8/269 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L     ++L  +  ++   A +       +E   RAE  N  KS FLA MSHE+RTP+
Sbjct: 456 EELQHYAAELLKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIRTPM 515

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+ILG ++++    +        + Y+     SG+ LLNLI++ILDLS+IE+G+  L  +
Sbjct: 516 NSILGMADMLTDTRLTS----EQRNYVSIFRDSGKALLNLIDDILDLSKIESGKLTLEHT 571

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
             ++ D+V E   ++ + A +KN+     +DP   S +  D   ++Q+++NLLSNA+KFT
Sbjct: 572 KFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLSNAIKFT 631

Query: 384 AIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G  V  ++    S     +   ++D+G GI+E +   +  +F Q   +      G GL
Sbjct: 632 DSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRKYGGTGL 691

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           GL I ++++    G   +R+    G E  
Sbjct: 692 GLSITRNLVELMNGHIDVRNVSSGGAEFR 720


>gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 986

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 142/252 (56%), Gaps = 9/252 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E    AE  N AKS FL++MSH++RTP+NAI+GF+ +         + +  ++
Sbjct: 455 KMNQALSEAVHAAETANRAKSIFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDRKRVRD 511

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL D++ +   ++  +   K +E
Sbjct: 512 YLGKILSSSNHLLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTIISGQIHAKQLE 571

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYI 403
           ++   +D +   V+ D+  + QV+LNLLSNAVKFT  GG V V +    G         I
Sbjct: 572 LYMDAMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCPGTVKGSELYEI 631

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KDNG G+++  +  + + F +   +  S  QG GLG+ I ++I+   GG   ++++  
Sbjct: 632 RVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVNMMGGTIEVQTEQG 691

Query: 464 EGVEVIAILPNT 475
           +G E I  LP  
Sbjct: 692 KGTEFIVRLPLR 703


>gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 941

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 13/293 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  + +        +  ++ L   +    +     ++ A+  N AKS FLA MSH
Sbjct: 432 FLLGISRDITEQRRAEDELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSH 491

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG+++++          +   + I  I RSG+HLL +IN+ILD+++IEAG+
Sbjct: 492 ELRTPLNGILGYAQILRR---DKNLEQRQADGIAVIQRSGEHLLAIINDILDMAKIEAGK 548

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            +L  S + L   +      ++L+A EK +     + P L  +V  DEK +RQV+LNLLS
Sbjct: 549 VDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAAVRVDEKRLRQVLLNLLS 608

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT   G V + V WT        ++D G GI E    T+   F Q S A      G
Sbjct: 609 NAIKFTET-GSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRETIFRPFEQVSDARHR-VGG 666

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            GLGL I++ ++   GG+  + S+   G      L        +P    E+  
Sbjct: 667 TGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL-------DVPAVAREAAD 712


>gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12]
 gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12]
          Length = 876

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 10/268 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + + N  I    A+    +  LE         +K+ EE++  KS F+A+MSHE+RTP+N 
Sbjct: 220 IKELNQHIEVATADLQQSLELLEEKNIELSLDKKKTEEKSRQKSEFIANMSHEIRTPMNG 279

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++GF+ V+    + PL      +Y+  I  S Q LL +IN+ILD S+I+AG+  L    +
Sbjct: 280 VIGFTNVLLESKLDPL----QLDYVKTIKTSAQDLLGIINDILDFSKIDAGKLHLDCIPL 335

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           ++ + + E + +    A +K I++    D ++   V  D   ++Q I NL++NA+KFT  
Sbjct: 336 NIRNCIDEVLTLAAPNAHKKGIDLIPITDINVPKTVLGDSFRIKQFISNLVTNAIKFT-D 394

Query: 386 GGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G V V               I+I D G GI+  +   + T+F Q   +I     G GLG
Sbjct: 395 HGYVLVRTKVEQETDKDYTLCITISDTGLGISPEDQNKLFTAFNQADTSITRRYGGSGLG 454

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI 469
           L I + +     G+  + S+L +G    
Sbjct: 455 LVICKKLCEAMSGRLSMTSELNKGSAFT 482


>gi|29832107|ref|NP_826741.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29609225|dbj|BAC73276.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1383

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 14/309 (4%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            A     V  I +A     A S    +     +  +++     E     AEL+ + +  +E
Sbjct: 867  AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAIQLQDRSDELQSQQAELQRSNAELEE 926

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN++L  + ++     G L+++  + +   IHRS
Sbjct: 927  KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 985

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LL LIN+ILDLS+IEAGR ++    + LI ++       +    ++ +     +   
Sbjct: 986  GSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTIDRGLAFDVAVGED 1045

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----------RGQYISI 405
            +   +++DE+ ++Q++ NLLSNA+KFTA  GRV + VG                    ++
Sbjct: 1046 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELRVGRVKDPEHRYTREDSEEVIAFAV 1104

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G GIA  ++P +  +F Q          G GLGL I++ I    GG+ +  S   +G
Sbjct: 1105 SDTGIGIAPEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIAESVPGKG 1164

Query: 466  VEVIAILPN 474
                  +P 
Sbjct: 1165 STFTLYVPV 1173


>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
          Length = 909

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 21/295 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242
              L     +   +    + + +   E    I            ++E+     D  +KRA
Sbjct: 227 GYMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRA 286

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    KS FLA+MSHELRTPLN ++GF+     +T+    N T ++Y+  I RS  +LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLL 342

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  L      L   + E +++L   A EK +E+   I   +    
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             D   M+Q+I+NLL NA+KFT   G + + V   +         + I D G GI+E + 
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  +F Q   +I     G GLGL I Q ++   GG+    S+L  G      +
Sbjct: 462 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|294660058|ref|XP_462511.2| DEHA2G22286p [Debaryomyces hansenii CBS767]
 gi|199434441|emb|CAG91021.2| DEHA2G22286p [Debaryomyces hansenii]
          Length = 1116

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 23/322 (7%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224
               V+        +     ++A  L + +  F  IT      +      +    E D L
Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             ++        E        R+ AE  N AKS FLA+MSHE+RTPLN I+G +++    
Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   + 
Sbjct: 516 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 575

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393
            L ++A EK++++  + D S    +  D   +RQVILNL  NA+KFT   GRV V+V   
Sbjct: 576 TLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKK-GRVSVSVKKS 634

Query: 394 -GWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 + +      + D G GI + ++  +  +F Q   +      G GLGL I++ ++
Sbjct: 635 TRIIEDKERLLLEFCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLI 694

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG+  + S   EG      
Sbjct: 695 HLMGGEIWVTSDYGEGSNFYFT 716


>gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
 gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
          Length = 709

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ K   +E        +  KS FLA+MSHELRTP
Sbjct: 264 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 323

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 324 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 382

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 383 EATNISDMAASMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 442

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 443 TEK-GSVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 501

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 502 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 544


>gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 640

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 5/250 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E + A+    E R +AEE    KS FLA++ HE+RTPLN ILG + ++    +    ++ 
Sbjct: 136 ERKNAEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDTPL----DQR 191

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K +   +  SG+ LL L+N+ILD SR+EA    L  ++  L+++V +  +++  RA +K
Sbjct: 192 QKVFAETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADK 251

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            + +  +  P +   V  D   +RQV+LNL+ NA+KFTA G  +       +      S+
Sbjct: 252 GLTLGCRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSV 311

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI E     +   F Q   ++     G GLGL I + ++   GG     S    G
Sbjct: 312 SDTGIGIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSG 371

Query: 466 VEVIAILPNT 475
            +    +P +
Sbjct: 372 TQFWFRIPFS 381


>gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 808

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+         
Sbjct: 538 Q-GVNLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP T   +   +   E+  
Sbjct: 650 KGTTFTFTLPYTVAKSVNADSEKENGD 676


>gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341]
 gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341]
          Length = 969

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 22/313 (7%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---- 235
                    +   +A A      +        +     Q  K+ L   +E          
Sbjct: 387 TQGKDELAQMGLAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTHQLSDIN 446

Query: 236 ----------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                      + R +AE+ N AKS FLA+MSHE+RTP+N +LG + +++  ++      
Sbjct: 447 HKLNQEVLNHAKARYQAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTS---- 502

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ +S   L  +VRE   ++Q RA E
Sbjct: 503 TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALE 562

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           K I +  +ID ++S  W  DE  + QV+ NL+ N +KFT   G+V + V + T   G   
Sbjct: 563 KGITLSYQIDENVSQYWQGDEIRIGQVLNNLVGNGIKFTEQ-GQVCIRVRFDTQSGGLCF 621

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D+G GIAE +  ++  +F Q        + G GLGL I++ ++   GG+  + S+L 
Sbjct: 622 AVEDSGIGIAEQDQVSLFDAFTQAEAGR-RKQGGTGLGLAISRKLVEAMGGELQLSSQLG 680

Query: 464 EGVEVIAILPNTR 476
           +G      LP  +
Sbjct: 681 QGSCFYFTLPLQQ 693


>gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 753

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 2/263 (0%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++ +  L   +            +  E + AKSRFLA MSHELRTPLNA+LGFSE++ +
Sbjct: 493 ARSLRTALNDVILRQLRTIRLLNLQLAESDRAKSRFLAHMSHELRTPLNAVLGFSEMLGM 552

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +  +   E IG +  + +HLLN+IN++LDLS+IEAG +++ +  + +  +     
Sbjct: 553 GIYGQV-VQRQSEAIGHVRDAARHLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQ 611

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            +L    +E  + I  ++  +L  + AD + + Q+++NLLSNA+KFT   G VHV     
Sbjct: 612 QLLSSLTREAEVTIRVEVPSALPRLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCRED 671

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +     +++ D G GIA  ++  VL  F Q    ++ A +G GLGLPI +S++  HGG  
Sbjct: 672 ASG-LCLTVHDTGIGIAADQLARVLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTI 730

Query: 457 LIRSKLREGVEVIAILPNTRVLN 479
            + S L +G  V    P +R++ 
Sbjct: 731 HLSSTLGQGTCVTLTFPPSRIVP 753


>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1888

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/251 (37%), Positives = 139/251 (55%), Gaps = 14/251 (5%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +       E    A+  N AKS FLA+MSHELRTPLNAILGF++++  +      +  ++
Sbjct: 1391 QRQSQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRA---LSTEHQ 1447

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  I+R+G+HLLNLIN+IL++S+IEAGR  L+ ++  LI ++     ML+ RA  K +
Sbjct: 1448 QNLAIINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGL 1507

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------- 400
            E+  +    L   + ADE  +RQV+LNLL NA+KFT   GRV + V   +          
Sbjct: 1508 ELNFEYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDT-GRVMLRVAMENMGEKILPHPP 1566

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +  + D G GIA  EI  +  +FGQ     KS  QG GLGL I++  +   GG   + 
Sbjct: 1567 HLFFEVTDTGRGIAPQEINLLFEAFGQTETGRKSQ-QGTGLGLAISRKYVELMGGDISVT 1625

Query: 460  SKLREGVEVIA 470
            S + EG     
Sbjct: 1626 SIIGEGSTFAF 1636


>gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 8/387 (2%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIA--IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
             +       +  WR   LV   A   G+   ++ L     +      + + A+ +++++
Sbjct: 308 ADSHLTAGAALGQWRPRHLVILPAKSDGMIEAVVELGFLHAYPDATKELLERASEVLSVA 367

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLF 208
           + + +                  L +Q+       +       A   +          L 
Sbjct: 368 VRSANYRASLQNFLEETQRQSEELQSQSEELRVNNEELEEQSRALKESHVRLEQQQAELE 427

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++N ++    A  +    +L  AK   D   +  E+ +  KS FLA+MSHELRTPLN+ L
Sbjct: 428 QTNTQLAEQAAMLEAQRDDLSQAKDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSL 487

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             ++++   + G L  E   E+   I  SG  LL LIN+ILDLS+IEAG+ E+   ++SL
Sbjct: 488 ILAKLLSDNSEGNLTEEQV-EFAQTIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSL 546

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             +  +   +    A +K +++  ++   +   V  D + + QV+ NLLSNA KFT   G
Sbjct: 547 KRLASDMERVFTPIANQKRLKMTARLGEGVPETVTTDRQRLEQVLKNLLSNACKFT-EHG 605

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V + +    G     ++KD G GI+      V  +F Q    I     G GLGL I++ 
Sbjct: 606 HVELAI-LKDGDRIVFAVKDTGIGISAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRE 664

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           +    GG   + S++  G      +P 
Sbjct: 665 LSRLLGGNLSVISQVDRGSTFSLSIPL 691


>gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 654

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L  A S   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 466

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY   I  +   LL LIN+ILDLS+IEAG ++   + I +   + E    +QLR +
Sbjct: 467 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLR 526

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+           +++ D+  + Q++ N + NA+KFT + G + +          Y  
Sbjct: 527 HNNVTCTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 585

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      S  QG GLGL I  +I+   GG+  + SK  +
Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 642 GSTFWFTLPYRQ 653


>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
 gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
          Length = 1053

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 8/318 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L            + L  +A     + +        T       I   +    +    
Sbjct: 206 LTLLKMALPPELAAALTLPLRAEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     +   + A+   +E + +AEE    KS FLA+MSHE+RTP+NAI+G S +   
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P      ++Y+  IH S   LL +IN+ILD S+IEAG+  +     SL +++    
Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
           ++   +A +K +E+   +   +   +  D   + QV++NL++NAVKFT  G   V V VG
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      ++ D G G+ E +   +  +F Q   +      G GLGL I++ ++   
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  + SK   G     
Sbjct: 502 EGEISVTSKPDAGSCFTF 519


>gi|239827300|ref|YP_002949924.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807593|gb|ACS24658.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 468

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              + + L+T  +  + +    +A  +   L     + YH+ + + +        D++  
Sbjct: 165 VAVIWLPLATLFVFVLLLAGKRMARHITDPLKEMEKVAYHMSQGDYRAQIPVRTNDEV-- 222

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
              +AK+ +   +  AEE ++ K  FLA++SHELRTPL+ + G+SE I    +     E 
Sbjct: 223 -GRLAKAFNVMAKAIAEE-DMRKREFLANVSHELRTPLSYVKGYSEAILQGLV--KTEEE 278

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y+  IHR    +  L+ ++LDL+R+E     L ++ +    ++ + +   +   Q+K
Sbjct: 279 ERKYVQLIHREADRMERLVRDLLDLARLEGNNVPLQKTPLVFAQVIEDTVAKYEPFLQKK 338

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +  ++D  +  +  D   + QV+ NLL NAV++T   G++H+ +   S     + I+
Sbjct: 339 QITLNMELDHDII-LEGDADRLEQVVQNLLDNAVRYTPAEGKIHIRLKKVSDASCQLIIR 397

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G+ + ++P +   F +   A    E G GLGL I + I++ H G     S+  +G+
Sbjct: 398 DSGKGVPKEKLPLLGQRFYRVDQARTRKEGGTGLGLAIVKQIISLHNGTISFFSEEGKGM 457

Query: 467 EVIAILP 473
           EV+  LP
Sbjct: 458 EVVIQLP 464


>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1514

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/316 (29%), Positives = 162/316 (51%), Gaps = 15/316 (4%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P  V +     +  H++       +   L      +        +          L   L
Sbjct: 781  PCYVEMMQGLQVQAHLVVPLFRSNILWGLLAIHQCSAPRPWQVKEREFAIQISTQLGVAL 840

Query: 229  EVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            + A+  + + ++++ A+  + AKS FLA MSHELRTPLNAILG+ E+++     P   ET
Sbjct: 841  QQAEFLNQAQQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQR---DPQLGET 897

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              E++G I RSG+HLL+LIN++L++SRIEAG+  L++ +  L  ++     ML+ +A+ +
Sbjct: 898  QTEHLGIIGRSGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQ 957

Query: 347  NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401
             ++++ +   ++   V+ADE  +RQV++NLL N + +T   G+V + V      GQ    
Sbjct: 958  GLQLYFERSATVPQFVFADEGKLRQVLINLLGNGLNYTEK-GQVLLQVDTPEQSGQPGRA 1016

Query: 402  ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++ D GPGI   ++  +  +F Q       A++G GLGLPI++  +   GG   +
Sbjct: 1017 CQLTFAVMDTGPGIKASDVDQLFEAFTQTDSGY-RAQEGTGLGLPISRRFVQLMGGDIEV 1075

Query: 459  RSKLREGVEVIAILPN 474
             S + +G      +P 
Sbjct: 1076 DSTVGQGSTFRFTIPV 1091


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 700

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 12/343 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +   +AL        +  +  P V+        +  V  +    +    L  +       
Sbjct: 78  SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 137

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              +V   +      D+ A +E A+ + DE + RAE  N+AKSRFLA++SHELRTPLN I
Sbjct: 138 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 196

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++    + P      + Y+     SG+ LL L++ ILD SRIEAGR +L+     
Sbjct: 197 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 252

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386
           +  +V   + +L  RAQ+K +EI   I   L+++   D   +RQ+++NL  NA+KFT  G
Sbjct: 253 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTG 312

Query: 387 GRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           G V V++       G G  ++++D GPGI E  IP +   F QG  +     +G GLGL 
Sbjct: 313 G-VGVSLARSGEEQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 369

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I + ++    G    RS +  G     +LP       +  +  
Sbjct: 370 ITRRLVERMNGTIEARSTMGRGSTFRVMLPLPAAEGAMSPETP 412


>gi|330829872|ref|YP_004392824.1| response regulator receiver [Aeromonas veronii B565]
 gi|328805008|gb|AEB50207.1| Response regulator receiver [Aeromonas veronii B565]
          Length = 608

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 154/393 (39%), Gaps = 28/393 (7%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
             S ++  E+Y      +   I++   W      +P           + A+LL       
Sbjct: 92  DRSLLQQTEIYQQASKAIRSYISLADIWLGPEATKPLDNLAHQELRQQLASLL------- 144

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
                L            +    +       +  +           F        + N+ 
Sbjct: 145 ---PQLHQLTLEVNQQATLFDVARRDSVREQIITTTLIATLQFALLFVLALLIWRQMNIS 201

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L  +         ++          + AE    AKS FLA+MSHE+RTP+N ILG   +
Sbjct: 202 FLQHK--------LMQQLNDKLLRANQAAEAGTRAKSSFLANMSHEIRTPMNGILGMLSL 253

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    M P      ++Y+     S  HLL L+N+ILD+S++E G+ EL  +   L  ++ 
Sbjct: 254 LADRDMDPRE----RDYLETARESANHLLGLLNDILDVSKLEEGKIELQLAPHHLPQLLE 309

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   ++Q     K I++   + P     +  D   +RQ++ NL+SNA+KFT   G V++ 
Sbjct: 310 DIRALMQSNCDAKGIKLTLTVAPDTPEWLMIDPLRVRQILFNLVSNAIKFTHQ-GEVNIR 368

Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V             ISI+D G G+++ ++  +   F Q  ++I     G GLGL I++++
Sbjct: 369 VDSTLLEQDRHSIRISIQDTGIGMSKSQLKNLFQRFAQADVSITRQYGGSGLGLEISRNL 428

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
               GG   + S    G     I P       I
Sbjct: 429 ARLMGGDISVESSEGHGSTFTYIWPARATTPSI 461


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 125/272 (45%), Gaps = 11/272 (4%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +   ++L      + L   +E   +        A   + AKS FL +MSHE+RTP+N +
Sbjct: 466 RRMEEELLRY---HEHLEGLVESRTAELQHALDAANIASRAKSEFLTTMSHEIRTPMNGV 522

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G  +V+    +         E +G +  S + LL LI++ILD SRIE+G  EL     S
Sbjct: 523 IGLLDVLSHSQLST----EQVEMVGIMRESAETLLRLIDDILDFSRIESGNLELDVGPAS 578

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT--- 383
           + D++   + +LQ  A  K++ +  +IDP +   V  D   ++Q++ NL+ NAVKF+   
Sbjct: 579 IPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQQILGNLVGNAVKFSSGL 638

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GRV + V           + DNG GIA   I  +   F Q   +      G GLGL 
Sbjct: 639 DRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGLS 698

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I   ++    G+  + S    G   +  LP  
Sbjct: 699 ICTRLVRMMKGRMEVNSLPGRGSRFVVTLPLA 730


>gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 576

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H   + ++++   A++              ++    AEE +  KS FLAS +HELRTPL
Sbjct: 289 RHWRPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPL 348

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+GF  ++        +++  +E++ + H+S  HLLNLIN+ILD+++IEAG+ +L   
Sbjct: 349 NGIIGFLRLVLDGM--ADDSQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEVG 406

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKF 382
           ++ L ++          +AQ K +    K  P+L+ +  + + + + QV+LNL+SNA+KF
Sbjct: 407 SVELAELFEAIDNFTLPQAQRKRLNYSSKYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKF 466

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG + +T                    + + D G G+A  +   +   F Q   +  
Sbjct: 467 THDGG-IDITAEIVKKKLYWRDREFPGMIKVRVSDTGIGVALEKQAKLFEKFVQVDGSHS 525

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476
            A  G GLGL I+Q ++   GGQ    S     G  V   +P  +
Sbjct: 526 KAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 570


>gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
 gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
          Length = 808

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 537

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+         
Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP   V   +  D+ +   
Sbjct: 650 KGTTFTFTLP-YTVAESVSVDSEKKND 675


>gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
 gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
          Length = 1120

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 7/263 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I ++   +    + +  AEE    KS FLA+MSHE+RTPLNA++G S ++    +   
Sbjct: 734 HDIKDMYAREESLRQAKADAEELADQKSMFLANMSHEIRTPLNALVGLSNLL----VANE 789

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   ++Y+  I+++  HL +++++ILD S+I+A R +L E A++  + + E   + +  
Sbjct: 790 THVKAQDYMRSINKASIHLKSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQS 849

Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+EK +         +  ++  D    RQ+I NL+SNA+KFT  G  + VT         
Sbjct: 850 AREKGLHFEVDNRLDNDIAIVIDPVRYRQIINNLVSNAIKFTEKGEVIVVTKKQQES--L 907

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +S+ D G G+ E ++  +   F Q  I       G GLGL I + +     G   + S+
Sbjct: 908 LLSVCDTGCGLDENQLSNLFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSISVSSE 967

Query: 462 LREGVEVIAILPNTRVLNFIPED 484
           L +G      +P     N +P +
Sbjct: 968 LGKGSCFYVSIPYKSESNALPAN 990


>gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 524

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E  +   +  +  A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            
Sbjct: 278 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 335

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +  Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + 
Sbjct: 336 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK- 392

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+           +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ 
Sbjct: 393 NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 450

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G 
Sbjct: 451 DTGMGISDDDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 506

Query: 467 EVIAILPNTRVLNFIPE 483
                LP   +    P+
Sbjct: 507 TFWFTLPLKEIKENEPK 523


>gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
 gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
          Length = 601

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 194/471 (41%), Gaps = 25/471 (5%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVL-------LVANIGTWFTQNPIFPMWSLI 78
             P +         +       +   + L +L            G   T      +    
Sbjct: 119 AVPLEAALSASRRVVAAAVGMALGCAIMLVLLEWFGALPASTVTGDLATLFTAIGITLAT 178

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
             A   A  +      +  +   E   +R+                 ++       +   
Sbjct: 179 VYAAGLAFGAESLAHTSKRLLTLEEGRYRLLARHMS----------DVIARHRANGDVNF 228

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL-----AGML 193
           I  +A  L+ +    L    L   V ++  P  +   + A        +       + + 
Sbjct: 229 ISPAAEALLGVPGPLLLRHGLFDRVHVADRPRYLTALSDAARGGEECSVEFRVRRDSAVH 288

Query: 194 ATALSFFTYITYHLFKSNVKILSCQ--AEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                +       L  +  K             + E +  +   +  R+ AEE   +KSR
Sbjct: 289 GGEFIWVEMRCRPLEPTQDKASGACEVVSVMRDVTERKAQEEALEIARREAEEAGASKSR 348

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLNAI+GFSE++  E    ++     EY G I+ SG HLL+++N ILD+
Sbjct: 349 FLATMSHELRTPLNAIIGFSEMLTHEDEMKIDAARRHEYAGLINESGLHLLSVVNGILDM 408

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++E+G++EL     +  + +     ++ L+A++K +E+  +    L  +  D +  +Q+
Sbjct: 409 SKMESGKFELVAEPFAPRETLASSCNLMVLKARDKGVELVLRAPSDLPQMTGDARAFKQI 468

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +LNLLSNA+KFT  GG V V+    +GR   + + D G GI + ++  +  +F Q   + 
Sbjct: 469 LLNLLSNAIKFTEEGGSVTVSAE-VAGRELALRVTDTGIGIGKDDLAHLGKAFFQAGASY 527

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
               +G GLGL I ++++A HGG+  + S++  G  V   LP        P
Sbjct: 528 HGRREGTGLGLSIVKNLVALHGGEMRVDSEIDCGTTVSVRLPIVFTPAAKP 578


>gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 617

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 154/288 (53%), Gaps = 5/288 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  Y       S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SH
Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISH 366

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPLN I    ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G 
Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +L+    +++++V E  + +   A+ KNI I    D     +  D   + +++LNLLSN
Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG ++VTV         IS+KD G GI E +I  +   F Q    ++  ++G 
Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G+GL + +S +  H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 608

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 4/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F++S+SHELRTPL +I G++E +    +   + E  K ++  I +  + L  L
Sbjct: 362 LERMRRDFVSSVSHELRTPLTSITGYTETLLEGAID--DAENAKHFLQIILQESERLTAL 419

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDLS+IE+GR E + + + L  IV + + +     ++K I +  +I   L  V AD
Sbjct: 420 INDVLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNAD 479

Query: 365 EKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +  +  V+ NLL NA+K+     G++ ++   T      + +KDNG GI   ++  +   
Sbjct: 480 KGYLELVLRNLLDNAIKYVAEQNGQIMISAS-TVDDMVRVEVKDNGIGIPRKDLGRIFER 538

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A   A  G GLGL I + I+  H G+  +RS+L  G +   ++P  
Sbjct: 539 FYRVDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIPIA 590


>gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 738

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 3/227 (1%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK+ FLA+MSHELRTPLNAI+G S++++ E +G L NE   EY+  I+ SG+HLL LIN
Sbjct: 360 RAKTEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQNEYVSCIYSSGEHLLALIN 418

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +ILDLS++E G+ EL  S + + D+    I  ++ RA EK +++  KID       ADE+
Sbjct: 419 DILDLSKVEEGKEELLLSPLPVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADER 478

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q++LNLL+NA+KFT + G V + V     +G   ++ D G GI   +   +   F Q
Sbjct: 479 RIKQMLLNLLTNAIKFTPV-GNVSLVVKKVP-QGITFTVSDTGIGIDPNQFQFLFEPFKQ 536

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               +    +G GLGL + + +   HGG   + S L EG +    LP
Sbjct: 537 LDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTLGEGSQFTLFLP 583


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 171/447 (38%), Gaps = 39/447 (8%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL----------AVYAANLSLGKKVM 94
             +   +L L    +A +    T      +W +  L                     + +
Sbjct: 247 RRKEKALLYLACFCIAALFYILTHGEKLLVWGMPDLPYEWILKIQSFSSTLFYYFLIRYV 306

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +   +I    +  +   +    +     LL  +   ++    L     +   + L +   
Sbjct: 307 HLTTQIVMNRIVLLLYNIVTALMLGMGLLLPTLVLSSFETFILLFGVVSVGYVLLILIRG 366

Query: 155 S-----NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
                 +  L     +S   +VV      +    V  ++   ML   L+    +      
Sbjct: 367 LLQRTDDAALLVISIMSILMIVVTSFVYVLGWGDVRGVTAYEMLIFVLAQTLLLAKRFVH 426

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +++ +                       +R    +  K  FLA+ SHELRTPL+ I+ 
Sbjct: 427 SFMEVENLS---------------------RRLLTLDGLKDEFLANTSHELRTPLHGIIN 465

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            ++ +     G   NE  K  +  I   G+ L  LIN+ILD S ++ GR  L+   +++ 
Sbjct: 466 IAQSMLDR-YGAQFNEPQKHNLALIVNVGRRLSYLINDILDFSNLKNGRLALNRRPVNVQ 524

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
             V   + +L     +K ++  ++   SL  V ADE  + Q++ NLL NA+KFT   G +
Sbjct: 525 TAVNSVLEVLGHNVGKKKLQFVKEWPNSLPKVDADEDRLNQILYNLLGNAMKFTEE-GEI 583

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++      R   IS+KD GPGIA   +  +   F +G+ A      G GLGL I + ++
Sbjct: 584 VISAK-VRNREMEISVKDTGPGIAPDHLSHIFEPFNRGANAEDKGYSGTGLGLGITRRLV 642

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476
             HGG   + S+L +G      LP   
Sbjct: 643 ELHGGYIRVESRLGKGSTFYFTLPLAE 669



 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 95/333 (28%), Gaps = 67/333 (20%)

Query: 157  FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                  +     P +  +     +        L  +L TA      I           L 
Sbjct: 756  ARFDLVITDWMMPEMSGIELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLR 815

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLA---------KSRFLASMSHELRTPLNAI 267
               + ++L A +    ++    R  AEE   +         K  FL +        LN I
Sbjct: 816  KPVDAEELKARVRTLLNM----RNSAEEAVRSEMAFLQAQIKPHFLYNA-------LNVI 864

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA-- 325
            +             ++ +   E                  +++LS+   G ++       
Sbjct: 865  VSTV---------AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENT 898

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-- 383
            + L   +      + L        +   I+   +          Q I   + NA++    
Sbjct: 899  VPLCKELELVESYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQPI---VENAIRHGVM 955

Query: 384  --AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
              A GG V V V         +S+ D+G GI    +  +          +        +G
Sbjct: 956  QRATGGTVRVIVQEDGADFV-VSVTDDGVGIPPERLQQL----------LSEEHVSSSVG 1004

Query: 442  L-PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            L  I + ++  +G    I S   +G  V   +P
Sbjct: 1005 LRNIHRRLIHMYGEGLRIESNPMQGTTVSFRVP 1037


>gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 771

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/295 (38%), Positives = 161/295 (54%), Gaps = 12/295 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240
           G      +  T I  H  K     L  +A   DL    +     A  L+D  RK      
Sbjct: 467 GGYVAVGTDITRIKDHEHKLIDNDLRLRATVADLKISQVKLERQAVQLADLARKYAEEKY 526

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAE+ N  KS+FLA+MSHELRTPLNAI+GFSE++     G L +E Y+EY  DI  SG +
Sbjct: 527 RAEDANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGRLGSEKYQEYCHDILTSGHY 586

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD+S+IEAGR +L    +     + E + ++  RA+ K +E+   I+  + S
Sbjct: 587 LLEVINDILDMSKIEAGRMKLDLEPLDFAGTLSESLRVVSGRAENKQLELHADIEQGI-S 645

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + ++Q+++NLLSNAVKFT  GG++ V  G        + I D G GIA   +  +
Sbjct: 646 VIADRRAVKQILVNLLSNAVKFTPEGGQITVR-GRARADSIVLMIADTGIGIAPQSLRKL 704

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F Q    +  +  G GLGL IA+S+   HGG   +RS+L +G  V  +LP  
Sbjct: 705 GQPFEQVESQLTKSYHGSGLGLAIAKSLTNLHGGSMRLRSQLGQGTVVRLVLPRQ 759


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 8/308 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN-----VKILSCQAEKDDLI 225
           ++AL+    + + +++     +   + +        L ++       +++      + + 
Sbjct: 374 ILALAITLGLGLLIVNWITKSIKQLSRATCAISQGKLNQNVSIQGFKELVILAESFNKMT 433

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            EL  + +  +   +  +  +  K  FLA+ SHELRTPLN I+G ++ I     GP++ E
Sbjct: 434 KELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPIS-E 492

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+ +  I  SG  L NL+N+ILD S++     +L  S++ + ++    +   ++  + 
Sbjct: 493 LQKKNLSMIVGSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEG 552

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYIS 404
           K++++   I   L  V ADE  ++Q++ NL+ NA+KFT   G V V+       +   I+
Sbjct: 553 KDLQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTDS-GVVKVSAELIDVNKKMAIT 611

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +   +  SF QG  + +    G GLGLPI + ++  HGG   ++S +  
Sbjct: 612 VSDTGIGIPEDKYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGI 671

Query: 465 GVEVIAIL 472
           G E    L
Sbjct: 672 GSEFTFTL 679


>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
           C6786]
          Length = 925

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 166/456 (36%), Gaps = 28/456 (6%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
           + +       I       P   + + + + +         +     +           LL
Sbjct: 256 VLVHAYSWKTIAAALMSMPRIALMTGLVVGIIGMLWIFAIQFDRKGLIPNYRRA--QRLL 313

Query: 112 VGQIAIGLC--WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
             ++          + L          L    +   L A +     +  L  A   +   
Sbjct: 314 ESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTGGEPLHIQLWKAYRNATAR 373

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
                   A++   +             +      Y      +  L         I+  +
Sbjct: 374 PD--SKDSALLQHDLAIERDESNPIYLQANVVAARYRGVNVQLCTLLD-------ISLRK 424

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++   +E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +         E
Sbjct: 425 ESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSM----RQSE 480

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +      LL++IN+ILDLS++E+G+  L      +  ++++ +      A+ K +E
Sbjct: 481 RLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLE 540

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404
           +F  +   +++ +  D   + Q++ NL+ NA+KFT   G + + V             I 
Sbjct: 541 LFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDS-GHISIDVHRAKTGPGNSAIEIW 599

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI    I T+   + Q   +I     G GLGLP+ Q +    GG   I S    
Sbjct: 600 VSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEF 659

Query: 465 GVEVIAILPN-----TRVLNFIPEDNHESTQYKCYA 495
           G  V  +LP         +  +P   H +      A
Sbjct: 660 GTTVTVVLPLHEARQAAAMPNVPTALHRNASMHARA 695


>gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1955

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 150/264 (56%), Gaps = 10/264 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I++ +  +    + ++ AE  + AK  F+A+MSHELR+PLNAILGFS +++  +   L+ 
Sbjct: 1472 ISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDE 1531

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++    I+RSG+HLLNLIN++LDL++IEA R  +  + ++L  ++ +   M  L+AQ
Sbjct: 1532 ---RKNAEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQ 1588

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402
            E+ +    +    +   +  DE  +RQV +NLLSNA+KFT  G   ++++V         
Sbjct: 1589 EQGLNFNVQKTSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNNV 1648

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G GIA  E   +  +F Q S A K  ++G GLGL I++  +   GG+  + 
Sbjct: 1649 MLNFEVEDTGVGIAPEEQTDIFEAFNQ-SQAGKQVKEGTGLGLAISREFIKLMGGEISVE 1707

Query: 460  SKLREGVEVIAILPNTRVLNFIPE 483
            S++  G +    +   ++++ IP+
Sbjct: 1708 SQVNIGSKFQFYI-VAKIVDKIPQ 1730


>gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
          Length = 617

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 154/288 (53%), Gaps = 5/288 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  Y       S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SH
Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISH 366

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPLN I    ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G 
Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +L+    +++++V E  + +   A+ KNI I    D     +  D   + +++LNLLSN
Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG ++VTV         IS+KD G GI E +I  +   F Q    ++  ++G 
Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G+GL + +S +  H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKENLEKENN 593


>gi|241957485|ref|XP_002421462.1| histidine kinase, putative; nuclear response regulator and
           transcription factor, putative [Candida dubliniensis
           CD36]
 gi|223644806|emb|CAX40799.1| histidine kinase, putative [Candida dubliniensis CD36]
          Length = 1070

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 136/269 (50%), Gaps = 15/269 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G ++
Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +    ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V
Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V
Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639

Query: 392 TVGWTSGRGQ---------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           +V  +               + + D G GI + ++  +  +F Q   +      G GLGL
Sbjct: 640 SVKKSDKLVLDSNSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGL 699

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I++ ++   GG+  + S+   G      
Sbjct: 700 SISKQLIHLMGGEIWVTSEYGSGSNFYFT 728


>gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1165

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 143/270 (52%), Gaps = 11/270 (4%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 ++ A   + +KS FLA+MSHE+RTPL AILGF+E++  +     +    ++ +  
Sbjct: 752  ELRLAQEAALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKREQAVKT 811

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  +G HLL +IN+ILDLS+IEAG+ E+ +++  L +I+     +L+  A EK +E+  +
Sbjct: 812  IQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVTR 871

Query: 354  IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNG 409
            I+  L   +  D   +RQ+++NL+ NAVKFT   GR+ + V +            I+D+G
Sbjct: 872  IETPLPDLIETDSTRLRQILMNLVGNAVKFTDK-GRIQIKVKFLEENESRFLKFEIEDSG 930

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEV 468
            PG+++ +   +  +F Q   ++     G GLGL I++ +    GG   +  ++  +G   
Sbjct: 931  PGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAWTEPGKGTCF 990

Query: 469  IA-----ILPNTRVLNFIPEDNHESTQYKC 493
                     P TR  N   ++ HE T  K 
Sbjct: 991  RVVLPVCTFPETRYTNSRFQEKHEQTDKKS 1020


>gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 911

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 20/302 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              LF + +  L    +   +   +        E+R++AEE   AKS FLA+MSHE+RTP
Sbjct: 157 AEGLFTTVIAALRAFDQIQSIETRVAERTRELRESREQAEEATKAKSAFLATMSHEIRTP 216

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N +LG   ++E   +        ++ +G +  S   LL +I++ILD S+IEAG+ +L  
Sbjct: 217 MNGVLGMLGLLERTELDDH----QRDTVGTMRESANALLRIIDDILDFSKIEAGKMDLER 272

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
            A+S+  +V      L   A  K + +   +DP++   +  D   +RQ++ NL  NA+KF
Sbjct: 273 VALSVPSLVEGVAETLAPAAGAKGLTLLTYVDPAIPQALLGDPVRLRQILFNLAGNAIKF 332

Query: 383 TAIGGRVHVTVGWTS-------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   GRV +                        I++ D G GI E     +   F Q   
Sbjct: 333 T-ESGRVILRAELEPAADGAGPGTGTGTEPILRIAVCDTGIGITETTRQRLFQPFTQAES 391

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLNFIPEDNHES 488
           +      G GLGL I++ + A  GG+  + S    G      LP     L    E+  E+
Sbjct: 392 STTRRFGGTGLGLSISRRLAALMGGEIGVESTPGAGSIFWLRLPMAHGALPPSAEEPQEA 451

Query: 489 TQ 490
            +
Sbjct: 452 IE 453


>gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1486

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D+    E   +L  + ++ AE    AKS FLASMSHE+RTP+N ++G   ++    +  
Sbjct: 673 RDITERTENQNALL-QAKEEAELATKAKSEFLASMSHEIRTPMNGVIGMLGLLSNSKL-- 729

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E     +     S Q LL+LIN+ILD S+I+AG+ EL +   +L  ++ +    +  
Sbjct: 730 --TEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNLRGMLGDFAEGIAH 787

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +AQ K +E+   +     S V  D   +RQ I NL  NA+KFT   G V V         
Sbjct: 788 QAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQ-GEVVVRAELKPAHE 846

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+ D G GI   +I  +  SF Q   +      G GLGL I + I    GG  
Sbjct: 847 GKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAIVKKISRLMGGDV 906

Query: 457 LIRSKLREGVEVIA 470
            + S    G     
Sbjct: 907 SVSSVYGIGSCFEI 920


>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 576

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDD-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395
           A  + I++  + D     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVPRSQAG 468

Query: 396 ----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                            +     +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASE 569


>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1242

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 169/401 (42%), Gaps = 18/401 (4%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
             +      +        R  L V    +     +  +V     T   L  Y     +  
Sbjct: 393 ANRAQAVVALTTELAGAARRILTVKSDMLSNDVAMQRIVADVDTTANRLAAYTEQDAVRV 452

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
                     +  AV  +F  ++VA+S    +   V+   L   +A  LS  T     + 
Sbjct: 453 DLQQRGIVSDVYRAVTSAFL-MIVAVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIR 511

Query: 209 KSNVKILSC-QAEKDDLIAELEVAKSLSDETRKR----------AEEENLAKSRFLASMS 257
             +   L      +D++ A +     + DE  +R          AE  N AKS FLA MS
Sbjct: 512 SGSDLSLRMSHKGRDEIAALIAGFNVMLDEIERRDVDLQAAIATAEAANSAKSDFLARMS 571

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +E+++   +        ++++  ++RSGQ LL +I++ILD S+IEAG
Sbjct: 572 HEIRTPMNGVLGMTELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           +  L     +L  ++ + + +L+  A+ K +E+  +   S+   +  D   +RQ++ NLL
Sbjct: 628 KLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDPVRLRQILTNLL 687

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT   G V ++  ++       +I D+G GI       +   F Q   +      
Sbjct: 688 GNAIKFT-EHGHVGLSASYSDDGRIVFTIADSGIGIPPDISAQLFRPFQQADSSTARKYG 746

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           G GLGL I++ +    GG   + S   +G       P    
Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTPFEPA 787


>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1034

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 11/255 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+E +  +      ++ AE  N AK  FLA++SHELRTP+NAILG +E++    +   
Sbjct: 370 EDISERKRLEGELLVAKEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETEL--- 426

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  ++ +  +  +  +LL ++N++LD ++IEAG+ EL  +  SL  +V + +  L  R
Sbjct: 427 -REDQRQCLATVKSAADNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAAR 485

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A    +E+   + P++  ++  D   +RQV+ NL+ NA+KFT   G V V V        
Sbjct: 486 AHRAGLELVGDVHPAVPDALVGDPGRLRQVLFNLIGNAIKFTPA-GEVVVGVEPADPSDI 544

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G     +++D G GI   ++  +  +F Q   +      G GLGL I+  ++A  GG  
Sbjct: 545 GGSAVRFTVRDTGIGIKPEKLDRIFHAFEQEDTSTTRRYGGTGLGLTISGRLVALMGGAI 604

Query: 457 LIRSKLREGVEVIAI 471
            + S+   G      
Sbjct: 605 GVESEPGRGSTFAFT 619


>gi|167648680|ref|YP_001686343.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351110|gb|ABZ73845.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 614

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 32/455 (7%)

Query: 58  LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS---DIKIGEVYVWRIWLLVGQ 114
           +   +     + P   MW  + LA+ A  L   + +  +    +    + +      +G 
Sbjct: 39  IGVCLVAQPVERPFRLMWLAVVLALLAVRLFTDRLLGAALGGRLMADRLLLLARVHSLGL 98

Query: 115 IAIGLCWTLLTLV-EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           I     W LL  V  P         +    + L   ++  LS       +++S   +  +
Sbjct: 99  ILSAGLWALLACVRIPQDSVSARYVLIIVLSALAGGAVGVLSPLKWTGRIYVSLILLPAS 158

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK- 232
           L+         +D +L  +             +     V  L  + E  +L+A++     
Sbjct: 159 LTLILNRG---VDATLGVLGVIFWIVMIVGHRNNHALLVDALRLRDENRELLADVARRNH 215

Query: 233 -----------------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                               +   + A+  N AKS+FLA++SHE+RTPLNAILG  +++ 
Sbjct: 216 ATLRLNHDLESSVRARTIELERMTEEAKVANRAKSQFLATVSHEMRTPLNAILGEGQLLA 275

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E + P    + +  +  I  + + + +LI+++LD+S+IEAG   L     +L  +V + 
Sbjct: 276 REALTP----SQRSRLQVIDTASRAMRHLIDDVLDISQIEAGALRLRPKVFALATLVDDI 331

Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             + +  A+ + + +   + P        D   +RQ++ NL++NA+KFT  GG V V +G
Sbjct: 332 QQIYRPLAEGRGLSLTVSLQPETAPFRRGDPDRLRQIVGNLIANALKFTRQGG-VTVKIG 390

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +   +S+ D G GI   +  T+   F Q   +      G+GLGL I + +    GG
Sbjct: 391 GDDEQ-LTVSVSDTGIGIDAKDHETIFQRFVQVDSSSTREAGGIGLGLAICRELSEQMGG 449

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              + S    G       P   VL   P    E  
Sbjct: 450 SLKVISARGIGARFDFSAPIPCVLASAPLAVAEDA 484


>gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 953

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 8/246 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A   ++E    A E N+AKS FLA+MSHE+RTP++ ILG +E++    +     E  +E
Sbjct: 428 EANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMVTTGL----TEEQRE 483

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  I  +G+ LL++IN+ILD+S+IEAGR EL     +    +   +     +A+   + 
Sbjct: 484 HMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSVRSFGPQAELNGLV 543

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY--ISI 405
               +   +   +  D   + QV+ NL+ NA+KFT  G   + V V             +
Sbjct: 544 FRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVVARKEGRVCLQFKV 603

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI E ++  V  SF Q   +++   QG GLGL I++ ++   GG+  + S + +G
Sbjct: 604 RDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMMGGEIGVESAVGKG 663

Query: 466 VEVIAI 471
                 
Sbjct: 664 STFFFT 669


>gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 603

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 3/231 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F+A++SHELRTP++ + G+SE I  +  G  ++E  KE    I+     +  L+
Sbjct: 367 DKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAG--SDEEKKELAQIIYDESLRMGRLV 424

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           NE+LDL+RIEAG   L+   +++ + V       Q  A + N+E+  +ID S +  + D 
Sbjct: 425 NELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNVELMGEIDQSDTEAYVDP 484

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+ NL+ NA+++T++ G V + +         + ++D G GI E ++P V   F 
Sbjct: 485 DRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGF-RLDVEDTGAGIPEEDLPFVFERFY 543

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A      G GLGL I ++I+  H G+    S++ EG      LP ++
Sbjct: 544 KADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFSVFLPFSQ 594


>gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 907

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           IL   A  +  I E   A+    E ++ AEE + AK  FLA++SHE RTP+NAI+G SEV
Sbjct: 345 ILQQNALLNAEIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEV 404

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I    +    +   + ++  ++++   LL+L+N ILD SR E+G+  L+ S   L     
Sbjct: 405 ILKTEL----SAPQRNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFT 460

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   M    A  K + +  ++ P +   V  DE  +RQ+++NL+SNA+KFT   G + +T
Sbjct: 461 QVHEMFLSAAAAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDT-GNITIT 519

Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                  +       S+ D G GI + +   +  SF Q   +      G GLGL I + +
Sbjct: 520 CKAFPAPSGRADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLL 579

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
               GG   +RS  R+G      LP   V         E+   +
Sbjct: 580 ADMMGGSITVRSAPRQGSTFTVCLPLKAVPEERVFPAAENPAVR 623


>gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223]
 gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223]
          Length = 968

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 32/337 (9%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L  +           +   +A A      +        +     Q  K+ L   +E    
Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++  ++
Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ ++   L  +VRE   ++
Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q RA EK I +  + +  ++  W  DE  + QV+ NL+ N +KFT   G V + +     
Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPE 615

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G   +++D+G GIAE +  ++  +F Q        +QG GLGL I++ ++   GG+  
Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673

Query: 458 IRSKLREGVEVIAILPN---------TRVLNFIPEDN 485
           + S+L +G     ILP           R L+ +P  +
Sbjct: 674 LSSQLGQGSCFSFILPLQPGQPVDTPARTLDEVPVAD 710


>gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans]
 gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 12/284 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +S   I++ +    DL  ++          +  AE  N AKS FLA MSHE+RTP+N +L
Sbjct: 149 RSYDDIVALENLSRDLERQVLERTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGML 208

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++     +   ++   +EY+     S + LL ++N+ILD S++E+G  E       L
Sbjct: 209 GMMQL----ALAQASDVEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDL 264

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
              V   I ++  R Q   + +  + D  L  +   D   +RQV+LNL+ NA+KFT   G
Sbjct: 265 PKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGDVGRLRQVLLNLIGNALKFTEQ-G 323

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + +      G       ++ D+G GI   E   +  SF Q   +I     G GLGL 
Sbjct: 324 SVTLKIERLPASGTQIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLS 383

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           I + I+    G   + S   EG      L  T V    P +  +
Sbjct: 384 ICKKIVEMQRGCIGVESTPGEGSRFWFEL--TFVPAPEPGEKSD 425


>gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
 gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
          Length = 675

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 165/439 (37%), Gaps = 22/439 (5%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +   +    L  L ++++        +        L           +         E  
Sbjct: 94  VCYAALFAGLVALQISSLAQPLLPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153

Query: 105 VWRIWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
                  +         +L  +               L  ++     +       +   L
Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213

Query: 160 P---YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                 V  +  P  V  + +   +  V+   +   L         +T  +         
Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDIT----- 268

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E     A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++  
Sbjct: 269 ---EHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA- 324

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             M P +   ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++    
Sbjct: 325 --MRPYDEAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             ++  A+EK I I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + V+V  +
Sbjct: 383 ETIEPMAREKQITIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHAS 441

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G+ 
Sbjct: 442 PEGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500

Query: 457 LIRSK-LREGVEVIAILPN 474
              S     G  +   LP 
Sbjct: 501 TATSNGTNLGTTMTVTLPL 519


>gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1443

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 28/282 (9%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I++ + A+    + +  AE  N AKS F+A+MSHELRTPLN ILG++++++ E   P 
Sbjct: 1077 RDISDRKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEE---PN 1133

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             + T KE +  I +SGQHLL L+N+ILDLS+IEA + EL          +   + ++ + 
Sbjct: 1134 LSATQKEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVIS 1193

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395
            A++KN+    +    L   V  DE  +RQV++NLL NAVKFT  GG V   VG+      
Sbjct: 1194 AKQKNLSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGG-VTFKVGYLGCSEL 1252

Query: 396  ---------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                        +     I D G GI   ++  +   F Q          G GLGL I++
Sbjct: 1253 NVDRSLTEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGN-TDRQVNGTGLGLSISK 1311

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             +    G +  ++S + +G      L        +P+ + E 
Sbjct: 1312 RLAELMGSELKVKSTVGQGSIFWLDL-------DLPDVSQEQ 1346


>gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 762

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 143/282 (50%), Gaps = 8/282 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLAS 255
           F  +I  HL  +  + L  +  ++      +     ++E R     A+  +L+KS FL++
Sbjct: 333 FLGHIGEHLAIAIQQALLYKQVQEQKQFFEKRVFECTEELRSSIAVAQSAHLSKSEFLSN 392

Query: 256 MSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           +SHEL TPL  ++G +  +         L+ E  ++YI  I ++G+ L++LIN+ILD S 
Sbjct: 393 ISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKYIESIQKNGKKLMDLINDILDYSS 452

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQV 371
           I +G Y+L+    SL  +V   +      AQ+K+I++          +  +AD + ++Q+
Sbjct: 453 ITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDLILDFQVQKEENDFYADRERIKQI 512

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + +L+SNA+KFT   G+V + +     +  +  ++D G GI++ ++P +   F Q   A 
Sbjct: 513 LSHLISNAIKFTPDQGKVTLRIWREKSQ-VFFQVEDTGIGISQEQLPLLFEKFQQLEKAR 571

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +    G GLGL + + ++  H G   + S   +G      +P
Sbjct: 572 QRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLFTVRIP 613


>gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
 gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
          Length = 995

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 133/261 (50%), Gaps = 12/261 (4%)

Query: 221 KDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             D+  E E               AE  N AK+ FL +MSH++RTP+NAI+GF+ +    
Sbjct: 450 NRDVTEEKEREIERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAIIGFTALATTH 509

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                N E   +Y+  IH S QHLL+LIN++LD+SRIE+G   +  + + L DI+ +   
Sbjct: 510 IG---NTELVLDYLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHLPDILHDLRT 566

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++Q     K  +++      +   +  D+  + QV+LN+ SNAVKFT +GG +++ V   
Sbjct: 567 IIQGSVHSKQQDLYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGGMINIRVSEK 626

Query: 397 SGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
             R         S+KDNG G++      V  SF +     ++   G GLG+ I ++I+  
Sbjct: 627 PCRRDGYITVVFSVKDNGIGMSREFRKHVFDSFSREHTVTENGIGGTGLGMAITKNIVDM 686

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG   + S+  +G E   +L
Sbjct: 687 MGGTIQVESETGKGTEFTIML 707


>gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
          Length = 557

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 15/315 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI--LSCQAE 220
            F    PV  A+           D+  +  +A     F      +    + +        
Sbjct: 103 AFCQECPVRGAIGAAFRQKSEFTDLQSSLNIAIGEDEFIKCNVMISGVFMTLDGEDRMVL 162

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               I  ++  +    E +++AE  + +KS FLA+MSHE+RTPLNAI+GFSE++      
Sbjct: 163 TVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLA----A 218

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +  ++Y+  +H + + LL L+N+ILDLS+IEAG  E   S + +  ++ +   +  
Sbjct: 219 ATEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFH 278

Query: 341 LRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++    +  +    +  L    V +D   + QV+ N +SNA+KFT   G + +       
Sbjct: 279 MKI-GYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTE-GSIRIGYKPCEN 336

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI+  ++  V   F +          G GLGL I ++I+   GG+   
Sbjct: 337 G-LRFYVTDTGSGISADKLGGVFDRFVRLQSDKN----GTGLGLSICKTIVNKLGGEIGA 391

Query: 459 RSKLREGVEVIAILP 473
            S + +G      LP
Sbjct: 392 ESVVGQGSTFWFTLP 406


>gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
 gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
          Length = 1126

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 12/347 (3%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I    TLL  ++  +     L  A+  +  PV        +         +  ++   + 
Sbjct: 566 IGHFLTLLFLINGLS----GLLLALIYAKTPVNSPTEAALLSITLWKVFFVLIIITGVVC 621

Query: 199 FFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +   + +       +    Q     + I   E       + ++ AE  N AKSR+L  +S
Sbjct: 622 WLFVLAHESRVVAEEESQRQTRLLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGIS 681

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELR+PLNAILG+++++E +T  P   +  K+ +G I RSG++L +LI  +LD+S+IEAG
Sbjct: 682 HELRSPLNAILGYAQLMENDTAIP---DNRKDALGVIRRSGEYLADLIEGLLDISKIEAG 738

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R +L    + +  ++ + + M +L+A+EK +         L   V  DEK +RQ+++NLL
Sbjct: 739 RLDLHRDEVRIDLLMEQLVHMFRLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLL 798

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+K+T   G + +T+ +   +    +IKD G GIAE  I  +   F +     +S   
Sbjct: 799 SNALKYT-DNGSISLTLKYR-SQVAEFTIKDTGEGIAEENIERIFRPFERIRTPGQSRT- 855

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           G GLGL I + +    GG   + S   EG      L  + +    PE
Sbjct: 856 GTGLGLTITRLLTEIMGGDLSVESTPGEGSTFRVSLMLSSLHTPRPE 902


>gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
          Length = 896

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +    +LE+ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLALINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +    + ++ + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPNLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHV------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +             +   S     IS+KD G GIA  +   +  +F Q   A
Sbjct: 630 TEK-GSVSLYFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 617

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI E +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 935

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      N     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    GQ             +G      
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 156/360 (43%), Gaps = 20/360 (5%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W             E       A +L            L    F     +  A S    
Sbjct: 603 AWGAPACAISADCVDES----VFAAMLAGRGQGVFVVRDLQSTPFALQDTLASAASPSTF 658

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +      + L G    AL       Y   +++ K++   A    +  E +++     + +
Sbjct: 659 VG---DLVFLDGRPVGALYVLFRGDYEPSENDGKLMGIVAATIRVEEERKISAQQLVKAK 715

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + AE  N AKS FLA+MSHE+RTPLN I G  ++      G   ++  ++Y+     SG+
Sbjct: 716 EIAESANRAKSEFLANMSHEIRTPLNGIFGMLQL----VGGTKLDDEQRDYVDTALTSGR 771

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +IN++LD S++EAG   +    + +  +V + +    ++A EK + +  + D S+ 
Sbjct: 772 SLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQAAEKQLVMAVETDASVP 831

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGI 412
             + +DE  +RQ++ NL+ NAVKFT   GR+ V                ++S+ D G GI
Sbjct: 832 PLILSDEARIRQILFNLVGNAVKFTPS-GRITVESWVQRADTTDQTMRLFLSVSDTGIGI 890

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E  + +V ++F Q   +      G GLGL I + ++   GG+  + S   EG  +   L
Sbjct: 891 PENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIYVESD-GEGTRIHLFL 949


>gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 769

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +   +EL  A +     ++RAE  N AKS FLA+MSHELRTPL
Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+++ +  GPL +  Y EY  DIH SG+HLLN+IN+ILD+S+IEAG   L   
Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHCE 619

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I L+ ++ E +    + A EKNI I Q+I   L ++ AD + M+QV+LNLLSNAVKFT 
Sbjct: 620 RIDLVPLIEESLRFTAIPAAEKNIVIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 678

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GGR+ V           ++I D G GI    +  +   F Q       ++ G GLGL I
Sbjct: 679 NGGRIAVRTRRI-DGAVLVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++S+ A HGG+  IRS+   G  +   +P
Sbjct: 738 SRSLTALHGGRMKIRSREAVGTVISLRIP 766


>gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
 gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
          Length = 748

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 16/260 (6%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             ++ AE  N AKS FL++MSH++RTP+NAI+G + +         + E  ++ +  I  
Sbjct: 348 RAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIG---DGERVEDCLKKIDI 404

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL +IN++LD+S+IEA + EL+  A S+  ++    ++++ +A+ K + +  K   
Sbjct: 405 SSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN 464

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGP 410
            +  +V  D   + Q+I+N+LSNAVK T  GGR+                    I D G 
Sbjct: 465 LNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDTGV 524

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G++E     +   F Q +   +S  +G GLG+ I + ++   GG   + S+  EG     
Sbjct: 525 GMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVFRV 584

Query: 471 ILPNTRVLNFIPEDNHESTQ 490
            L        +P  + E  Q
Sbjct: 585 EL-------ELPLASQEEVQ 597


>gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 583

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++ +  +  F+A++SHELRTPL  +  ++E +    +     ET   ++G + +    + 
Sbjct: 348 QKLDQMRKEFVANVSHELRTPLTTVKSYTETLLDGAIDE--KETAMHFLGVMEKEADRMT 405

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSV 361
            L+ ++L+LSRI+  + +L    ++L  ++ E +    +   +   ++    D      +
Sbjct: 406 ALVQDLLELSRIDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYFI 465

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   +RQ++ N+LSNA+K++   G + V +         + I D G GI E ++  + 
Sbjct: 466 EGDLSRIRQILHNILSNAIKYSPEPGTLGVYMK-KENAYVIVEITDTGMGIPEEDLERIF 524

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ +M  HGG   I S+L +G +VI   P
Sbjct: 525 ERFYRVDKARSRKMGGTGLGLSIAKELMLLHGGDIKIESQLGQGTKVILNFP 576


>gi|255531133|ref|YP_003091505.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255344117|gb|ACU03443.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 787

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 166/444 (37%), Gaps = 28/444 (6%)

Query: 51  ILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
           +L    L++  +               +   +   VY+  +      +   +     +  
Sbjct: 202 LLLTGCLMMGGLFFLGLYLMGSRDKAILLFALYSIVYSYRIIGIDNYVLHTVLPQMDWYL 261

Query: 107 RIWLLVGQIAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            + +    + +G+    L    + P   +   +    S     +L++  L        + 
Sbjct: 262 TVRMEYLSLFLGIGMFALYTRYLYPQDTSIIVIGTIFSLCFGFSLAVLCLKPLYFTQLIN 321

Query: 165 LSFFPVVVALSTQAIM--------SMHVLDISLAGMLATALSFFTYITY-----HLFKSN 211
                ++  L     +            +   ++ +    +   + + Y          +
Sbjct: 322 PFLVIMIFCLVYVPYVYTMAYRKKRPGAIYTLMSAVALMPVFAISLLHYWNVIPAFQLVS 381

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                       LI    V+     + R  AE+   AKS FL++MSHE+RTPLNA++G S
Sbjct: 382 FIFYISFFFLQSLILSHRVSFEQ-KKARAEAEQGLKAKSEFLSTMSHEIRTPLNAVIGMS 440

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++          E  KE +  +  S  +LL+++N+ILD ++IEAG+       + +  I
Sbjct: 441 HLLLKNG----PREDQKEQLDVMLFSANNLLSIVNDILDYNKIEAGKVSFEHIEMDIPAI 496

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389
               +  LQ  A +K IE+   +DP+L   +  D     QVI NL+ NA+KFT  G   V
Sbjct: 497 AGNIVSGLQSSAHDKGIELTLHVDPALKNKLMGDPTRSSQVITNLVHNAIKFTNKGSVEV 556

Query: 390 HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V   +       I +KD G GI++ +   +   F Q   +      G GLGL I + 
Sbjct: 557 RLIVAAQTETDITLNIQVKDTGIGISKDKQKVIFDRFTQVDSSTSRGFGGTGLGLSICKR 616

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           I+        + S    G     I
Sbjct: 617 ILELQNSSLNLISDEGRGSTFYFI 640


>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 848

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 130/263 (49%), Gaps = 18/263 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             +I+ L+     +D    +A+  + AKS FLA+MSHE+RTP+N +LG +E++    +  
Sbjct: 251 RQMISRLQQKTKETDLALTKAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRTDLDT 310

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 + +   I +SG  LL +IN+ILD S+I+AG+  L+    SL+D   +   ++  
Sbjct: 311 ----RQRTFTDVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSS 366

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
           R  EK+IE+  +I P L   +  D   +RQ++ NL+ NAVKFT   G V V + W     
Sbjct: 367 RVVEKDIELAVRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQ-GHVMVEINWKDVEP 425

Query: 397 SGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                         IS+ D G GI   +I  V   F Q   +     +G GLGL IA  +
Sbjct: 426 EDGEGASSRRLALSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRL 485

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
           +   GGQ  + S + EG      
Sbjct: 486 VELMGGQIKLESTVGEGSTFSFT 508


>gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
 gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
          Length = 1462

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +   D  R++AE    AKS+FLA++SHE+RTP++ ILG  E+++   +    +
Sbjct: 698 ITLLKKQQQALDNARQKAESATAAKSQFLATISHEVRTPISGILGLLELMQEHQL----S 753

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E      G +++S ++LL+++N++LD S+IEAG+ +L+ + I L  ++   +    + AQ
Sbjct: 754 EELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQ 813

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K +      DP+L+  ++AD+  + Q++ N L+NA+KFT  G     + V       + 
Sbjct: 814 QKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQK 873

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D G GI +    ++   F Q          G GLGL IA  ++    G   + S
Sbjct: 874 VSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSS 933

Query: 461 KLREGV--EVIAILP 473
           +  +G    V   LP
Sbjct: 934 EEGKGSHFTVTVTLP 948


>gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 768

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E   LI  +       +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++ 
Sbjct: 283 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 342

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    NE  ++++  ++ SG H++ L+NEILD S+IE G  E   +      I+   
Sbjct: 343 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 398

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++       P+     AD+  +RQV+ NLL+NAVKFTA  G V V   
Sbjct: 399 NSVYYTLCAEKGLQFKVYSTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 457

Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I +KD G GI E     +   F Q   +      G GLGL I + I   
Sbjct: 458 EHTREKANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 517

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            GG   + S++  G      L         PE      +YK
Sbjct: 518 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 555


>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
           histidine kinase [uncultured prokaryote AT5]
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 13/297 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL---IAELEVAKSLSDETRKR---- 241
           L+ ++ +A      I   + +     L+   +  D    I +      +  E R+R    
Sbjct: 80  LSTIIVSAYGDMANIRTAMNRGAFDFLTKPIDFLDFESTITKTIRHVEVLREARRREAEN 139

Query: 242 --AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              E  +  KS+FLA MSHELRTPLNAI+G +E++          E   E +  ++ +G 
Sbjct: 140 QRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNA-ARFGTEKALEPLRRVNAAGT 198

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL+LINE+LDLS+IEAG+ EL+   ++L  ++ E I      A++    +  +   +L 
Sbjct: 199 HLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNRLIVEAQDNLG 258

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEI 417
           +  AD   ++Q++LNLLSNA KFT   G V + V   +       +++ D G G+   + 
Sbjct: 259 AFTADPLRLKQILLNLLSNACKFTKE-GDVALRVRKVADGRDWVELAVADTGIGLTAEQQ 317

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F Q          G GLGL +++ +    GG   + S+  +G      LP 
Sbjct: 318 AKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVFTVRLPV 374


>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
 gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
          Length = 1045

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 140/319 (43%), Gaps = 8/319 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L           V+ L  Q      + D        T    +  I   +    +    
Sbjct: 206 FTLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLGISIFELNGQC 265

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     +   +  +   +E R +AEE    KS FLA+MSHE+RTP+NAI+G S +   
Sbjct: 266 QAAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    +   ++Y+  IH S   LL +IN+ILD S+IEAG+  +     SL +++    
Sbjct: 326 TEL----SAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVS 381

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
           ++   +A +K +E+   +   +   +  D   + QV++NL++NAVKFT  G   V+V VG
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVG 441

Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       + D G G+ E +   +  +F Q   +      G GLGL I++ ++   
Sbjct: 442 ERQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 453 GGQFLIRSKLREGVEVIAI 471
            G+  + S+  EG      
Sbjct: 502 EGEISVISQPEEGSCFTFT 520


>gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 621

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 7/263 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            VA          A+  + AKS FLA+MSHELRTP+NA+LG  ++++   + P+      
Sbjct: 248 RVAVGDLTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQKANLKPVE----H 303

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+   +  G  L+ +IN+ILD S+I+ G   L    + L  ++ +    ++  A+ + +
Sbjct: 304 EYLKTAYEVGDRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKL 363

Query: 349 EIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           ++   I P   ++ W D   +RQ++ +++ NAVKFT   G V +T            I+D
Sbjct: 364 DLTAHIAPGCPTLFWGDNTRLRQLLRHVVGNAVKFTDS-GYVRITAKVVLPGEIQFKIED 422

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI +     +  +F Q   +I+    G GLGL I++ +     G+    S++  G  
Sbjct: 423 TGVGIGKENQEALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTT 482

Query: 468 VIAILPNTRVLNFIPEDNHESTQ 490
               LP   V+   P+   ++ +
Sbjct: 483 FHIALPGEPVMEP-PQGEAKAPE 504


>gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 632

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L  A S   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 389 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 444

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY   I  +   LL LIN+ILDLS+IEAG ++   + I +   + E    +QLR +
Sbjct: 445 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLR 504

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+           +++ D+  + Q++ N + NA+KFT + G + +          Y  
Sbjct: 505 HNNVTCTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 563

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      S  QG GLGL I  +I+   GG+  + SK  +
Sbjct: 564 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 619

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 620 GSTFWFTLPYRQ 631


>gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 575

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   + +   +++  I    + L+ L
Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + E  + + ++V E I +L+++A++KNI++  K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV         I +KD G GI E EI  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKL-DNLIVIKVKDTGIGIPEKEIERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  + S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573


>gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 909

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  L ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 177 VFVATLMLLFCLCLAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
              + +   +    + + +   E    I            +LE+     D  +KRA+E  
Sbjct: 231 GELSILKNGINAMAMSLTAYHEEMQHNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN +LGF+  +    +      T ++Y+  I RS  +LL++IN
Sbjct: 291 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRT----TQRDYMQTIERSANNLLSIIN 346

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EAG+  L      L   + E +++L   A +K +E+    D S+   V  D 
Sbjct: 347 DVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNVIGDA 406

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVL 421
             ++Q+++NL+ NA+KFT   G + + VG      S     I ++D+G GI+E +   + 
Sbjct: 407 LRLQQILINLIGNAIKFTEK-GYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQTQMF 465

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +I     G GLGL I Q ++   GG+    S+  +G   +  
Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIR 515


>gi|240140121|ref|YP_002964598.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240010095|gb|ACS41321.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 1071

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184
           +E          +       I   +      ML     +    V+V    +         
Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 536

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237
           L  +L  +    +     + +    +       Q E        +  IA  +V  +   +
Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 596

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ AE  NLAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS
Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHL  LI+ +LD+SR+EAGR +   + I L D + + + M++L+A+   +         
Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713

Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L +V A DEK +RQ++LNLLSNA+KFT   G V + + +  G+    +I+D G GI E +
Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +GS+    A  G GLGL IA  +    GG+  + S++ EG      L    
Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831

Query: 477 V 477
           V
Sbjct: 832 V 832


>gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 818

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 161/315 (51%), Gaps = 2/315 (0%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            F P +     +A  S  +  ++  G    A + +           +++    +    + 
Sbjct: 499 GFRPALAGSGLRACWS--LPILTAEGKPLGAFAVYHTSARGPDVREMEMARRASHLAAIA 556

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                A+ L ++ +  AE  +  KS FLA+MSHELRTPLNAI+GF+EV+E E     +  
Sbjct: 557 IASHEAERLLEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPI 616

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               Y  DI  SG+HLLNLIN+ILD+S++EAG+ EL E      +++  C  +++ RA E
Sbjct: 617 AKAGYASDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAME 676

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           + I++  ++ P L  V  D+   +Q++LNLLSNA+KFTA  G V V V     RG  I++
Sbjct: 677 RRIDLRLEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAV 736

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   ++  V   F Q          G GLGL +++ +   HGGQ  I S   EG
Sbjct: 737 SDTGIGIRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEG 796

Query: 466 VEVIAILPNTRVLNF 480
                 LP +R+L  
Sbjct: 797 TTATLRLPPSRLLTA 811


>gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
 gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
          Length = 852

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 7/247 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RA + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   ++
Sbjct: 607 IQRYKDTEEELIAARDRALQADRLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LQAFSS 664

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++++  I+ +   LL LIN+ILDLSRIE+G  +   S+ +L  I++E     +L   
Sbjct: 665 EEVQQFVETININCTLLLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMP 724

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +         + +   +  D   ++QV+ NL++NA KFT   G + +           + 
Sbjct: 725 QGVELCTDFPEGADKYITTDAVRLKQVLNNLINNAKKFTVQ-GSITLGYRVDESGYTTVF 783

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI++ +   +   F +      S  QG GLGL I Q+I+    G   + SK   
Sbjct: 784 VEDTGAGISDEDQKHIFERFYKAD----SFTQGAGLGLSICQTIVERIHGTITVTSKPGR 839

Query: 465 GVEVIAI 471
           G      
Sbjct: 840 GTRFEVR 846


>gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
 gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
          Length = 785

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +      R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSDIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G +    G        + 
Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRFGFGRMDKD-IRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I + I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLNF 480
           G      +P       
Sbjct: 630 GSTFYFTIPYEETGEH 645


>gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
 gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
          Length = 883

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 134/283 (47%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L++ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASEILRSSKYKSEFLANMSHELRTP 497

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +    +  + + D K + Q+I NLLSNA KF
Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 616

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA  +   +  +F Q   A
Sbjct: 617 TEK-GSVSLHFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGA 675

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S + EG      +P
Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 790

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 180/459 (39%), Gaps = 39/459 (8%)

Query: 44  SLFRVSPILPLFVLLVANIGT-WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           ++     I+ L    V  I            +W+  ++ + A                  
Sbjct: 9   TMGIALWIVSLIAAAVMVIVWRINRHESGPGLWAGSSVVLAAC--WTPLWFTEGLGSAVV 66

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                   + G + +     +L     G              +++ L   AL +  L Y 
Sbjct: 67  FINNTGAFIAGLLLLE---GVLRFKGIGDQHRRLPWHGLYLAVVLNLIFFALDHHQLRYL 123

Query: 163 VFLSFFPVVVALSTQAIMSM---HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
           +  +    V+AL+   ++      +            +     + Y    +   ++    
Sbjct: 124 ILDANLFGVLALTAFFLVWRSSEGLERFIYGATAVVFVMMAAVLAYRWGLAATGVIGVDD 183

Query: 220 EKDDLIAELEVAKS---------LSDETRKRAEEENLA-----------KSRFLASMSHE 259
             +     + +A           L+     RA++E+             KS FLA+M+HE
Sbjct: 184 RVNPATGPIILASIPWTLGWTYGLAMAANLRAQQESERARAEAERANRAKSEFLANMNHE 243

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA+LG ++++    +    +    +++G IH S + LL +IN+ILD+S+IE+G+ 
Sbjct: 244 IRTPMNAVLGRTQLLLDTDL----DAQQLDHLGKIHNSSKMLLGIINDILDISKIESGKL 299

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
           E+      L +++ +   +    A EK +++   I P L  +   D   + QV+ NLLSN
Sbjct: 300 EIEPHRFDLREVIDQVDTLFSAAASEKGLDVTYDIQPDLPRMLIGDSLRLTQVLSNLLSN 359

Query: 379 AVKFTAIGGRVHV---TVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+KFT  GG V +    VG            ++D+G G+   ++  +   F Q   +   
Sbjct: 360 AIKFTPRGGTVELNLHEVGEADDDAAHVRFQVRDSGIGMDAEQLKRIFQPFEQADASTTR 419

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              G GLGL I + ++ N GG+  + S+  +G      L
Sbjct: 420 QYGGTGLGLEIGRRLVTNMGGRLEVTSRPGQGSRFFFTL 458


>gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
 gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
          Length = 612

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +    +G  + E    ++       + ++
Sbjct: 372 EKIDAERREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPRFLSVTQNETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +    + I  +   I   ++  +E++++  + +      V 
Sbjct: 430 RLVNDLLQLSKFDSKDYQFNREWTNFIKFISLVIDRFEMT-KEQHVDFIRNLPQREIYVE 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG +  TV      G    S+KD G GI + ++  + 
Sbjct: 489 IDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDEGIGIPKKDMDKIF 548

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G  V   LP
Sbjct: 549 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600


>gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 697

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 6/324 (1%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           + L F  +V  +       +++L          A +    +     K+    ++   E  
Sbjct: 229 MALIFVALVATMGIIFYTRLNILRPLADLGRQVAGATRGILPSRYGKATSNEVAKLGEAL 288

Query: 223 DLI-AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            L  AE           R  AE  +  K  FLA++SHELRTPLNAILG+S++I     G 
Sbjct: 289 ALADAEKRQLLENETIARNEAERASRLKDEFLATLSHELRTPLNAILGWSQLILS---GN 345

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L  E     +  I R+ +    LI ++LD+S I +G+  L      + ++V   +  ++ 
Sbjct: 346 LKKEDIHRGLETIERNARVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKP 405

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            AQ K + + + +     S+  D   ++Q++ NLLSN++KFT  GG++ VTV   +    
Sbjct: 406 TAQAKGVILKKTLGKKFDSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNL-FL 464

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I D+G GI    +P V   F QG  ++     G+GLGL I + ++  HGG     S 
Sbjct: 465 EIRISDSGSGITSAFMPYVFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESP 524

Query: 462 -LREGVEVIAILPNTRVLNFIPED 484
              +G   I  LP    ++    +
Sbjct: 525 GEGQGSSFIVNLPVAPPVSETKSE 548


>gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
 gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
          Length = 1348

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/386 (27%), Positives = 185/386 (47%), Gaps = 8/386 (2%)

Query: 95   NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
              DI   +  +  +  ++     G+              P        +  +     ++L
Sbjct: 971  QPDISELKARIAEMRTIIDTATDGVVLIGSDGTIRSISRPAEALFGFDSDEVTGKPFASL 1030

Query: 155  SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
                   A       +        +            +   A   F  +   + +     
Sbjct: 1031 FAIESQRAARDYLTGLSEPGVASVMNDGR------EVIGREAQGRFIPLFMTIGRLPNDS 1084

Query: 215  LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              C   +D  I + + A+    + R  AE  +  K+ FLA +SHE+RTPLNAI+GFSE++
Sbjct: 1085 GFCAVVRD--ITQWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAIIGFSELM 1142

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
              E  GP+ N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++  A+SL D + E
Sbjct: 1143 VDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAE 1202

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             + M+Q +A  + + I       L  V AD + +RQ+ LN+LSNA+++T  GG+V V+  
Sbjct: 1203 TVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTA 1262

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            + +     + ++D G G+++ EI   L  F Q +   +    G GLGLP+ ++++  +  
Sbjct: 1263 YETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRA 1322

Query: 455  QFLIRSKLREGVEVIAILPNTRVLNF 480
            +F I S   EG  V    P+TRVL  
Sbjct: 1323 RFTINSTPGEGTLVEVAFPSTRVLAE 1348


>gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
 gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
          Length = 748

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 16/260 (6%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             ++ AE  N AKS FL++MSH++RTP+NAI+G + +         + E  ++ +  I  
Sbjct: 348 RAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIG---DGERVEDCLKKIDI 404

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL +IN++LD+S+IEA + EL+  A S+  ++    ++++ +A+ K + +  K   
Sbjct: 405 SSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN 464

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGP 410
            +  +V  D   + Q+I+N+LSNAVK T  GGR+                    I D G 
Sbjct: 465 LNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDTGV 524

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G++E     +   F Q +   +S  +G GLG+ I + ++   GG   + S+  EG     
Sbjct: 525 GMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVFRV 584

Query: 471 ILPNTRVLNFIPEDNHESTQ 490
            L        +P  + E  Q
Sbjct: 585 EL-------ELPLASQEEVQ 597


>gi|117924080|ref|YP_864697.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607836|gb|ABK43291.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 911

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 147/322 (45%), Gaps = 13/322 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           LP     +   +            HV  I         + ++           + +LS  
Sbjct: 448 LPQQDHATLRALFAKAVGHIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG 507

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +    I      ++ + E   RAE  N AKS FLA MSHE+RTPLN +LG  +++    
Sbjct: 508 YD----ITHKRALEAENREALARAESANQAKSEFLAIMSHEIRTPLNVLLGMGDLLHESL 563

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +     E     +  + ++G+HL+ LI++ILDLS+IE G   L+   +    +      +
Sbjct: 564 L----TEEQTGQLELLIKAGKHLVVLIDDILDLSKIEFGGLTLTREPLQPHRLFLLICDI 619

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           ++L+AQEK +     I   L   V  DE  +RQ+++NLL NA+KFT   G V + + +  
Sbjct: 620 VRLQAQEKGLTFNCDIPTELPPWVLGDEGRLRQIMINLLHNAIKFTQQ-GHVTLKIAYQP 678

Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
               + I+I D+G GIA   +  +   F Q   +I     G GLGL IA++++   GG  
Sbjct: 679 AGSLFSITISDSGIGIAAKHLNHIFDKFSQADSSISRRYGGTGLGLAIARNLVTLMGGHL 738

Query: 457 LIRSKLREGVEV--IAILPNTR 476
            + S + +G        LP T+
Sbjct: 739 TVESCVNQGSHFQLTLELPPTQ 760


>gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 773

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE  N AKS FLA+MSHELRTPLNAI+GFSE++E    GPL +  Y+EY  DI+ SG+
Sbjct: 530 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSSRYEEYATDINSSGK 589

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +LL +IN+ILD+S+IEAG++ L +  I L  ++ E + ++ L+A +K I +  +I  +L 
Sbjct: 590 YLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADAL- 648

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +++AD + ++Q+++NLLSNAVKFT  GG + V    T      ++I+DNG GI +  +  
Sbjct: 649 TLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 707

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q          G GLGL I++S+    GG   IRS    G  V   +P  +   
Sbjct: 708 LGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRIPVKKATP 767

Query: 480 FI 481
            +
Sbjct: 768 AV 769


>gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56']
          Length = 961

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 6/272 (2%)

Query: 221 KDDLIAELEVAKSLSDET-RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            + L  E       S+   R  AE  +  K  F+A++SHELR+P+NAILG++ ++     
Sbjct: 531 AERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILRGRAP 590

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P    T    +  I R+ +   ++++E+LD+SRI +G+  L    + L  ++R  +  +
Sbjct: 591 EP---PTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAI 647

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           QL A+ K I +   IDP  SS+  D   + QV+ NLLSNAVKFT  GGR+ V +   +G 
Sbjct: 648 QLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRR-AGA 706

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+ D G GIA   +P +   F Q   +      G+G+GL I + ++  HGG   + 
Sbjct: 707 HAALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVA 766

Query: 460 SK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S+    G      LP   V    P+     ++
Sbjct: 767 SQGEHLGATFTVTLPLAGVSQEAPDAAARPSE 798


>gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
 gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
          Length = 418

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               +++AE  + AKS FLA++SHELRTPLNAI+GFS+++E +    L++   +  + +I
Sbjct: 24  LVLAKEQAESADRAKSEFLATISHELRTPLNAIIGFSKLLEEQ----LDDPELRGDVRNI 79

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   L  +++++L+ SRI+A   +L  S   L  +VR+   + +  A +KN+E     
Sbjct: 80  SSSATSLHLILSDVLEYSRIQANGLKLDPSPFDLDAMVRQVYSLNRNLALKKNLEFSLVN 139

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR--GQYISIKDNGP 410
           +      V  D   +RQV+ NL+SNA+KFT IG  ++ +     +      +I + D+G 
Sbjct: 140 ETEGPCFVHGDANRLRQVVQNLVSNALKFTDIGYVKMRLMTSQPAQGRIEVFIEVVDSGI 199

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI++  +  +   F Q S  I     G GLGL I + ++   GG+  + S+L  G     
Sbjct: 200 GISQPALQKLFQRFSQASREINRQYGGTGLGLAICKGLVELMGGRIDVSSELGVGSVFTV 259

Query: 471 I--LPNTRVLNFI 481
              LP    L+  
Sbjct: 260 SLNLPLASALSPA 272


>gi|332992628|gb|AEF02683.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2]
          Length = 687

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/300 (30%), Positives = 136/300 (45%), Gaps = 25/300 (8%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
                 L    +FF +               +  K  +    E ++    E   +A+E N
Sbjct: 147 WLATIFLLGVEAFFIFAPM-----------DRKIKKTIQHLYEASEKAETEA-LKAQEAN 194

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FL+SMSHELRTP+N + G  E+         N      Y+     +G+ LL LIN
Sbjct: 195 RAKSEFLSSMSHELRTPMNGLFGMIELAMDNPSKSEN------YLRKAKTAGRQLLTLIN 248

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365
           +ILDLS+IEAG+  + +  + L+ ++ E + + ++  Q K ++       +L   +  D 
Sbjct: 249 DILDLSKIEAGKIVVGKGPVDLLQLLDEVVSIQRIYCQNKGLDFHYNKQQTLAPIIQGDI 308

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLT 422
             + Q++ NLLSNA+KFT   G V ++V      SG     S+KD G GI   ++ T+  
Sbjct: 309 TRIAQILHNLLSNAIKFT-ESGSVTLSVSQAVTASGNTLLFSVKDTGIGIDSDKLSTIFQ 367

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +      G GLGL IA+ +     G  L  S L  G E    LP   V   +P
Sbjct: 368 KFEQADQSTTRHYGGTGLGLSIAKELAQLMDGNILATSTLGAGSEFTLTLPV--VEESLP 425


>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1023

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 16/297 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +     +        +A +  L   +    +  +  +  AE  N AKS FL++MSHE+RT
Sbjct: 226 LKRQERERLETARELEAYRGHLEELVATRTAELEAAKVAAEGANRAKSAFLSNMSHEIRT 285

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G+S +I  E + P   E     +  ++ S QHLL +IN+ILDLS+IEA +  L 
Sbjct: 286 PMNAIIGYSHLIRQEPLTPRQTEQ----LNRLNDSAQHLLQIINDILDLSKIEAEKLTLE 341

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
                   ++     ++  + Q K + +   +D     +  D   + Q++LNL+SNAVKF
Sbjct: 342 ARDFEPARVLDHVFNLVADQIQAKELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKF 401

Query: 383 TAIGGRVHVTV--------GWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T   G++ + V        G       ++  +++D G G+   ++  +  +F Q   +  
Sbjct: 402 TER-GQIAIAVYPMSVPLAGAADPETLWLRWTVRDTGIGMTAEQLARLFRAFEQADGSTT 460

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDNHES 488
               G GLGL I++ +    GG+    S+   G E    +P         P+   E 
Sbjct: 461 RRYGGTGLGLAISKRLTELMGGRIGASSQPGTGSEFWLEIPFEPAREPAHPDPKLED 517


>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
 gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
          Length = 891

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 147 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 200

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+         +Y+  I RS  +LL +IN
Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPPQTDYLQTIQRSANNLLCIIN 316

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L   + E +I+L   A EK +E+   ++  +   V  D 
Sbjct: 317 DVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQVIGDA 376

Query: 366 KGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             ++Q+I NLL NA+KFT  G     V V           + I D G GI+E +   +  
Sbjct: 377 MRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTGIGISESQQTQLFQ 436

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 437 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTFKFHL 486


>gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 597

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F+A++SHELRTP++ + G+SE I        + E   E    I+     +  L+
Sbjct: 366 DKLRKDFIANVSHELRTPISMLQGYSEAIIDGI--ASSEEEKTELAQIIYDESLRMGRLV 423

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           NE+LDL+R+EAG  +L+   IS  D  +  +   Q  A+E  I++   I+ ++  V+ADE
Sbjct: 424 NELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIKLSGDIEENIQYVYADE 483

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+ NL+ NA++ T  GG V + +     +G  ++I+D G GI+E ++P V   F 
Sbjct: 484 DRIEQVLTNLIDNAIRHTPEGGEVTLQMEVL-DQGVKVNIQDTGIGISEEDLPFVFERFY 542

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   A      G GLGL I ++I+  H G+  + SKL EG      LP
Sbjct: 543 KADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFSFFLP 590


>gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1650

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 28/271 (10%)

Query: 225  IAELEVAKSLSDETRKRAEEE------------------NLAKSRFLASMSHELRTPLNA 266
            I E    +   D  R+  E                    N AKS FLA+MSHE+RTP+NA
Sbjct: 1001 ITERRRLEQELDRHRRHLEALVDERTAQLTEARARAEAANQAKSAFLANMSHEIRTPMNA 1060

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +LGF  ++E   + P + +  ++    IH +GQ LL+LIN+ILD S+IEAGR EL  +  
Sbjct: 1061 VLGFCYLLEQHALDPASADLVRK----IHNAGQALLDLINDILDFSKIEAGRLELEAAPF 1116

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L +++     ++   A +K +E+        +  +  D   +RQV++NLL NA+KFTA 
Sbjct: 1117 RLSELLDTLAGIMTAAAGDKPLELILTPPEADIEGLIGDAGRLRQVLINLLGNAIKFTAR 1176

Query: 386  GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             G V + +   +          +++D G GI       +   F Q  ++      G GLG
Sbjct: 1177 -GEVELRIECLAEHDDAVELRFAVRDTGIGIDPESQERLFQPFTQADVSTTRRFGGTGLG 1235

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I++ ++   GG   I S+  +G      L
Sbjct: 1236 LSISRQLVRLMGGTLEIESQPGQGSTFHFSL 1266


>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1]
 gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1]
          Length = 935

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      N     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
             +   L + + + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    GQ             +G      
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
 gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
          Length = 935

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      N     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + + + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    GQ             +G      
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1097

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 14/266 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               +  ++     +  AE+ + AKS FLA+MSHELRTPLN ++G ++++    +     
Sbjct: 551 ATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTPLNGVIGMTQLLMNTELDS--- 607

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++    H SG+ LL LI++ILDLS++EAGR EL +    L +++ E     +   +
Sbjct: 608 -DQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQPFRLGNLITEVEDSTRPALE 666

Query: 345 EKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
              +     +  P    +  D   + +V++NLL NA KFT   G + +            
Sbjct: 667 ADGLTFQNTRQFPEGLVLRGDRVRLLRVLMNLLGNAGKFTPE-GSISLVTRMEQPSEDTA 725

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + SI D G GI   +   +  +F Q   +      G GLGL I + ++    G+  + 
Sbjct: 726 DLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGLGLAICKHLVEAMEGEIGVE 785

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           S+L  G      +     L  +PE  
Sbjct: 786 SELGHGSTFWFRI----SLPIVPEAE 807


>gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 935

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      N     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    GQ             +G      
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|288957487|ref|YP_003447828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909795|dbj|BAI71284.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1064

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/406 (22%), Positives = 143/406 (35%), Gaps = 34/406 (8%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  +            +  +            +        A     L    LP      
Sbjct: 202 RHAVAQIVAVCPPGDGVALVSRLTDGPRPAEPLVLGGAGRHAGMEGTLLFLALPPDA-AQ 260

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                +A         H + +  +         +      L     ++L     K  +  
Sbjct: 261 VVRAALADGRNRYERGHSVLVFRSATRRHDTVVYLGHGRALSADERRLLEVFCAKVAIGF 320

Query: 227 ELEVAKSLSDETRKRAE-------------------------EENLAKSRFLASMSHELR 261
           +         E  +  E                           N AKS FLA+MSHE+R
Sbjct: 321 DNVHLYEELTELNRSLEGQVAQRTRDLVAAREAAEAARSEAEAANQAKSLFLATMSHEIR 380

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N I G  E++E  ++        +E +  +  S   LL +IN+ILD S+IEAGR +L
Sbjct: 381 TPMNGIQGMLELLEHTSLTG----DQRELVSVVRESAGALLTIINDILDFSKIEAGRLDL 436

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
               ++L ++V      L   A+ K + +   IDP L   V  D   +RQV+ N+  NAV
Sbjct: 437 ERVPVALANVVEGVADTLAPSARAKGLSLVTYIDPDLPAEVLGDPVRIRQVLFNIAGNAV 496

Query: 381 KFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFT  G   V V +    G    I +   D G GIA+ +   +   F Q  ++      G
Sbjct: 497 KFTQSGSVTVRVELAHFDGDRVTIRVAVIDTGIGIAKEDQSRLFRPFTQAEVSTTRRFGG 556

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            GLGL I + +    GG   + S++  G           V   + E
Sbjct: 557 TGLGLSICRRLAELMGGDVGVTSEVNAGSTFWFTFAAELVSTTVDE 602


>gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 761

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  + +    R++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++  E +     
Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ +   LL LIN+ILDLSR+E+G+         L  ++ E     QL   
Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E  +E+  ++      V  D   ++QV+ N ++NA+KFT  G   ++ VG+   T G   
Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI E +   V   F +         QG GLGL I Q I    GG+  ++S+
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744

Query: 462 LREGVEVIAILPNTRV 477
             +G      LP  R+
Sbjct: 745 YGKGSRFTLTLPKERI 760


>gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1068

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/233 (40%), Positives = 136/233 (58%), Gaps = 10/233 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLASMSHELRTPLNAILGF++V++        N  +K+ +  I RSG+HLL LI
Sbjct: 599 NCAKSEFLASMSHELRTPLNAILGFTQVMQR---DQELNPDHKQNLEIIGRSGEHLLELI 655

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+IL++++IEAGR   + +   L  ++     ML L+A+EKN+++  +   +L   +  D
Sbjct: 656 NDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETD 715

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI----SIKDNGPGIAEGEIPT 419
           E  +RQV++NLL NA+KFT  GG +  +      G  Q I     ++D GPGIA  E+  
Sbjct: 716 ESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQ 775

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +FGQ      S  +G GLGLPI+Q  +   GG+  + S L  G      +
Sbjct: 776 LFEAFGQTETGRNSN-EGTGLGLPISQKFVQLMGGEISVSSVLGRGSLFTFTI 827


>gi|291523437|emb|CBK81730.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 959

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              +       + L    V ++   A K    A  E A+ +++   + A+  N AK+ FL
Sbjct: 530 VVTVLALLIFGWLLTIMAVTMVRLSARKKAQKAVQEKAEEMAELA-EHAQAANKAKTAFL 588

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSH++RTP+NAI+GF+ +     M    ++  K  +  I  S +HLL+LIN+ILDL+R
Sbjct: 589 SHMSHDMRTPMNAIIGFTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDILDLTR 644

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372
           IE G+ + +     + +I    + + +     ++I    + + + + +V AD   +R V+
Sbjct: 645 IENGKVKYNPVPADVKNITDSALDITKGFLTNRDINFKIQREEAKIPNVLADPARLRDVL 704

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +N+LSNA KFT  GG +          G         I D G G++E     V   F Q 
Sbjct: 705 VNILSNAAKFTPDGGTITFEARCLEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQE 764

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +++   GVGLG+ I +  +   GG   ++SK  EG      +P  
Sbjct: 765 DSDVRTQYHGVGLGMAIVKKYVDMMGGTISVQSKKHEGTTFTVDIPLE 812


>gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 761

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  + +    R++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++  E +     
Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ +   LL LIN+ILDLSR+E+G+         L  ++ E     QL   
Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E  +E+  ++      V  D   ++QV+ N ++NA+KFT  G   ++ VG+   T G   
Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI E +   V   F +         QG GLGL I Q I    GG+  ++S+
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744

Query: 462 LREGVEVIAILPNTRV 477
             +G      LP  R+
Sbjct: 745 YGKGSRFTLTLPKERI 760


>gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 640

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/273 (34%), Positives = 139/273 (50%), Gaps = 11/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAE--LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +  +      AE+  + AE   + AK   D+ R  AE  N  KS FLA++SHE+RTP
Sbjct: 227 QAREDTINRERHNAEQRAVEAEEANKRAKVEFDQ-RLVAESANKMKSEFLANVSHEIRTP 285

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NAILGFSE++E E +   + E    Y+  I+ SG+ LL+LIN+ILDLS++EAG+ EL  
Sbjct: 286 MNAILGFSELLEKEDIDKKSME----YVEAINSSGRSLLHLINDILDLSKVEAGKLELIY 341

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           + + L  +V E   +      +KN++   ++D  +   V  DE  +RQ++ NL+ NAVKF
Sbjct: 342 TKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVKF 401

Query: 383 TAIG-GRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G  +V +               + D G GI E     +  +F Q S  I     G G
Sbjct: 402 TEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGTG 461

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I + +    GG   + S   EG E    L
Sbjct: 462 LGLSICKELSQLMGGSINLVSAKGEGSEFTVSL 494


>gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 590

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 6/239 (2%)

Query: 239 RKRAEEEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   E+ N    +  F+A++SHELRTPL+ + G+SE +  + +   + E  +E    I  
Sbjct: 348 RDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALVDDFID--DPEQRRELAEIILE 405

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
               +  L+N++LDL+++E+GR+ +    + +  ++++        AQE+ +    ++  
Sbjct: 406 ETLRMRRLVNDLLDLAQLESGRFVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQV 465

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD   + QV+ NL+ NA + T   G V +     S     I+++D G GI   
Sbjct: 466 DDPVIVDADVDRLEQVLTNLIDNAFRHTQPPGSVTIRFS-VSQDTARIAVEDQGAGIPPE 524

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +IP +   F +   A      G GLGL IA++I+  H G   + S+L +G     +LP 
Sbjct: 525 DIPYIWERFYKVDKARTRNRGGTGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLPL 583


>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
 gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
          Length = 1053

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 8/318 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L            + L  +      + +        T       I   +    +    
Sbjct: 206 LTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     +   + A+   +E + +AEE    KS FLA+MSHE+RTP+NAI+G S +   
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P      ++Y+  IH S   LL +IN+ILD S+IEAG+  +     SL +++    
Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
           ++   +A +K +E+   +   +   +  D   + QV++NL++NAVKFT  G   V V VG
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      ++ D G G+ E +   +  +F Q   +      G GLGL I++ ++   
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  + SK   G     
Sbjct: 502 EGEISVTSKPDAGSCFTF 519


>gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Bradyrhizobium sp. ORS278]
          Length = 2117

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 24/372 (6%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L+         L +     +   + +++LS F      FL      + +   +I +   
Sbjct: 1312 ALLRAVPKNLVVLPVLFENQVKAVIELASLSPFTTSQMTFLEQLTDSIGIVLNSIEATMQ 1371

Query: 185  LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             +  L      A +        L ++N ++     +  +   E+E      ++ R+  EE
Sbjct: 1372 TEGLLKQSQQLA-AELQAQQRELQQTNEQLEQKAQQLAERNVEVERKNQEIEQARRALEE 1430

Query: 245  -------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN+IL   + +     G L  +   E+   IH +
Sbjct: 1431 KATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTVKQV-EFARTIHGA 1489

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LLNLI++ILDLS+IE+G   +    I   +++       +  A+ + +     +DP+
Sbjct: 1490 GTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSFNIDVDPN 1549

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYI 403
            L+  +  D K ++QV+ NLLSNA KFTA GG V + V    G                  
Sbjct: 1550 LARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSADHPVLNSTPAVIAF 1608

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI + +   +  +F Q          G GLGL I++ +    GG+  +RS   
Sbjct: 1609 EVTDTGIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELANLLGGEIHLRSAPG 1668

Query: 464  EGVEVIAILPNT 475
            +G      LP  
Sbjct: 1669 KGSTFTLYLPLK 1680


>gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 382

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 4/243 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVI-ELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            KS F  +MSHEL+TPL  ILG  ++I +  ++  ++     ++I  I ++   LL LIN
Sbjct: 119 EKSEFFYNMSHELKTPLTVILGAIQLIEQKNSVIEVDRRKSSKHITTIKQNCYRLLRLIN 178

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +LDLSRIE+G  + +    +++ +V E  + +   A++K++ I             D  
Sbjct: 179 NMLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISAVDID 238

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + ++ILNLLSNA+KFT  GG++ +TV        +IS+KD G GI +  +  V   + Q
Sbjct: 239 KIERIILNLLSNAIKFTNPGGKISITVSA-KNDKVHISVKDTGIGIPKDMLHNVFERYQQ 297

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              ++    +G GLGL I +S +  H G   ++S+   G E    LP   + +   + NH
Sbjct: 298 VDSSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPIKHIESS--DSNH 355

Query: 487 EST 489
            +T
Sbjct: 356 STT 358


>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 956

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 11/278 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  ++  +F +     +     +D+    E A+   +   ++AEE N AKS FLA+MSH
Sbjct: 177 FWARVSARVFATPDHRNAVLGVLEDITPSYE-ARQAIEHAHQQAEEANRAKSSFLANMSH 235

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAI+G S +++   +    NE  + Y+  I  S QHLL +IN+ILD S+IEAG+
Sbjct: 236 EIRTPMNAIMGMSYLVQKTEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGK 291

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             +      L  ++     ++  +A  K +E+   +D  +   +  D   + Q+++N  +
Sbjct: 292 LGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYAN 351

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G + + V            + +++D G GI+E +   +  SF Q   +   
Sbjct: 352 NAVKFTER-GEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTR 410

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              G GLGL I++ +     G+  + S   +G      
Sbjct: 411 KFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 448


>gi|254562560|ref|YP_003069655.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254269838|emb|CAX25816.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 1059

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184
           +E          +       I   +      ML     +    V+V    +         
Sbjct: 465 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 524

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237
           L  +L  +    +     + +    +       Q E        +  IA  +V  +   +
Sbjct: 525 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 584

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ AE  NLAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS
Sbjct: 585 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 641

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHL  LI+ +LD+SR+EAGR +   + I L D + + + M++L+A+   +         
Sbjct: 642 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLRFRFTRPEI 701

Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L +V A DEK +RQ++LNLLSNA+KFT   G V + + +  G+    +I+D G GI E +
Sbjct: 702 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 759

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +GS+    A  G GLGL IA  +    GG+  + S++ EG      L    
Sbjct: 760 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 819

Query: 477 V 477
           V
Sbjct: 820 V 820


>gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 579

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 8/271 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + ++    K++L   +++        ++ AE+ N +KS+FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAINDIEHKEELQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  +     ++   ++ +  +  S + LL +IN+ILDLSRIE+G +EL    
Sbjct: 227 AVLGLIDLLRDD-----SDAYQQDMLEQMENSAELLLVIINDILDLSRIESGHFELQRHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           ISL   ++  +      AQ K+I    K         W D   + Q++ N++ NA+KFT 
Sbjct: 282 ISLSRKLQHALEYHSQVAQAKDITFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTH 341

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V V++  T+     I +KD+G GI    I  + + F Q   +I     G GLGL I
Sbjct: 342 H-GFVDVSL-VTARDRLEIEVKDSGIGIDNERIEHLFSPFIQADTSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + ++   GG   + SKL EG      +P  
Sbjct: 400 TKHLVELMGGSITVSSKLGEGSLFTISIPLQ 430


>gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297]
 gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297]
          Length = 1120

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 166/326 (50%), Gaps = 9/326 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L ++ +   +L          +    S   + S       +  ++   + +   + +   
Sbjct: 575 LVVNLMLGALLVLVYRH--IVLQAGTSVPLLASGLWSLFFILIIVTGVVIWLFLLAHESR 632

Query: 209 KSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  +  + Q ++    I   +V  +     ++ AE  N AKSR+L+ +SHELRTPL +I
Sbjct: 633 MNAQRESNVQTKRLLQEIEAHQVTDAALQTAKELAENANAAKSRYLSGISHELRTPLQSI 692

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG+++++  +   P    + +  +  IHRSGQ+L +LI  +LD+S+IEAG+ +L  ++++
Sbjct: 693 LGYTQLLNDQ---PDTTPSSRTRLNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVA 749

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
             ++V++   M +++A+ K IE    I  +L   V  DEK +RQ+++NLLSNAVK+T   
Sbjct: 750 FPELVQQIADMFRMQAKAKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYT-DD 808

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +T+ +   +    +++D G GIAE +   V + F +      S   G GLGL I +
Sbjct: 809 GYVRLTLRYR-SQVAEFTVEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVK 867

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            ++   GG   + S + +G      L
Sbjct: 868 LLVEIMGGDIQLSSSIGQGSRFTVSL 893


>gi|294054561|ref|YP_003548219.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613894|gb|ADE54049.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1071

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 145/330 (43%), Gaps = 13/330 (3%)

Query: 160  PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            P+ +  +   +V+       + +  +      +  T       +   L     +  +   
Sbjct: 746  PWFILSTGLAIVITAVAAYQLRIRSMRRQRVLLQRTVKERTQELELLLAHVEAQNKALMM 805

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             ++ L + +       +  +  AE  +  K+ FL +MSHE+RTP+NAI+GF E+++ + +
Sbjct: 806  HREHLESMVNTRTKELEIAKNEAELSDRIKTAFLQNMSHEIRTPMNAIVGFLEMLKADDL 865

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 E + ++   I  + Q LL LI++ILD++R+EAG   +    + L D++ E   + 
Sbjct: 866  ---TREEHDDFSNIIRSNSQTLLVLIDDILDMARLEAGELRIDREPVLLNDLMYELEAVF 922

Query: 340  -QLRAQEKNIEIFQKIDPSLS----SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             Q R Q    EI    D +       +  D   +RQ++ NLL NA+KFT   GR+  +  
Sbjct: 923  EQERHQLTKSEIKLYFDETYLISDFKLMTDPTRLRQILGNLLGNALKFTDK-GRIWFSYR 981

Query: 395  WTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         ++ D G GI E  +  +   F +G  +     +G GLGL I + +  
Sbjct: 982  LLDEDHENPQIEFTVGDTGIGIPEEHLNVIFKRFRKGDGSDTGLYRGAGLGLAIVEKLTT 1041

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              GG+ ++ S   +G     +LP  R  + 
Sbjct: 1042 IMGGRVVVESTPGQGSIFTILLPYERPPSA 1071


>gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 579

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 5/302 (1%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                +    + + +    A  +  F        + +   L   +      A       L
Sbjct: 278 VLNNGIIRSAVIMPMFAPGAKRVGVFVLGREEPHRVSQHELRFASTLAVQAAVSIHTAFL 337

Query: 235 SDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            +E +  + A+E +  +S+ L ++SHELRTP+ AI GF+  ++      +  E  +++I 
Sbjct: 338 FEEAKTIEAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWIN 397

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +I ++ + L  L+ ++LDLSR+E+G   +      + D++ E    LQ+ A+ +N  +  
Sbjct: 398 EIEQNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRN--LVV 455

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           ++  +L  +  D + + QV+ NL+ NA KF+  G  + V           + + D G GI
Sbjct: 456 QVSDTLPLIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENG-IRVGVLDEGEGI 514

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                  +   F Q   A    ++G GLGL I ++I+  HGG+  + S   +G      L
Sbjct: 515 PPEYHDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTL 574

Query: 473 PN 474
           P 
Sbjct: 575 PV 576


>gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1071

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 138/281 (49%), Gaps = 13/281 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  +L  +LE    + +   + A+  N AKS FL+ MSH++RTP+N I G +E+     
Sbjct: 523 TELRELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIRTPMNVITGMAEIAAAHI 582

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +  K+ +  I  S  HLL LIN++LD+S+IE G + +S + + L D ++E I +
Sbjct: 583 G---DQDRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSISMAPMCLPDELQEIITI 639

Query: 339 LQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +    ++ N      ++ P   +  +D    RQ++LNLLSNA KFT   GR+ + +    
Sbjct: 640 VLPGIRKMNQRFDVYLEGPGWENFMSDALRFRQILLNLLSNASKFTPKDGRIILKIEIQE 699

Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      ++ DNG G++   +  +   F +   +     +G GLG+ I + ++   
Sbjct: 700 TESAKKAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQIEGSGLGMAITKRLIDLL 759

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GG   ++S+L  G     ++P    ++ + +   E   ++ 
Sbjct: 760 GGTITVKSQLGVGTVFDVLMP----MDVLADSEEEQKDFRG 796


>gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 779

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 130/257 (50%), Gaps = 9/257 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             +   +  A + S E+  +AE  + AKS FLA+MSHE+RTP+N +LG +E++    + P
Sbjct: 207 RPMEVAIRRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTP 266

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 K +   I +SG  LL +IN+ILD S+I AG+  L  +   L + V +   ++  
Sbjct: 267 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSA 322

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           R  EKN+E+  ++DP L   V  D    RQ+I NLL NAVKFT   G V + VG      
Sbjct: 323 RVAEKNLELIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEK-GHVLIDVGGEIVND 381

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I ++D G GI   ++  V   F Q   +     +G GLGL IA  ++    G+  
Sbjct: 382 VVQLKIRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 441

Query: 458 IRSKLREGVEVIAILPN 474
           + S++  G      +P 
Sbjct: 442 VESEIGRGSVFWFAVPL 458


>gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 764

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 162/361 (44%), Gaps = 18/361 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W ++   + G      L     A L     + + ++  +  ++       VV + T  
Sbjct: 260 LVWAVIRFGQFGATNLISLVTM-LAALGTVRGLGSFASEDINESLLRLQLFTVVIVVTNL 318

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +   + +   A               HL + + ++   +    +    LE       E 
Sbjct: 319 SLMATLREKKEAFNNLRQSKL------HLQEKSSQLEQSKIILKENAFLLEQQNLELIEA 372

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE  N  K+RFL+SMSHELRTPLNAILG  E+++        +E  +  +  I  SG
Sbjct: 373 KQAAENANRTKTRFLSSMSHELRTPLNAILGLVELLKDSD---NLDEYERGDLQTISDSG 429

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            HLL+LI +ILD+SRIEAGR EL    +     ++    ++Q +     IE   +  P L
Sbjct: 430 IHLLHLIEDILDISRIEAGRVELHFQEVDFPKFLQGIKGIIQAQINTDAIEFICEFPPKL 489

Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSG-----RGQYISIKDNGPG 411
            +V   DEK ++QV+LNLL NA KFT  G  +  + +                ++D+G G
Sbjct: 490 PAVVSIDEKKLKQVLLNLLHNAAKFTEKGQIIFRLKLHSFPDLSETYTLLNFEVEDSGIG 549

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   ++  +   F Q   A K   QG GLGL I+Q I+   GG+  + S+   G +   +
Sbjct: 550 IEPDKLNLIFLPFEQTGKA-KFKTQGTGLGLAISQEIVRMMGGKISVTSQPGIGSKFEFM 608

Query: 472 L 472
           +
Sbjct: 609 I 609


>gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum]
          Length = 848

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 6/269 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            + +     +   I  +  A   S   R+ AEE    ++ FLA MSHELRTPLN ILG S
Sbjct: 444 EQRIESIITQGQDITTIAEAAKQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVS 503

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++++ E     ++    E +  +  SG+HLL ++N+ILD S+IE G++ + ES   L+++
Sbjct: 504 QLLKREI----SDHEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEV 559

Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     + +    EK IE   K + P    + +D+  + Q++ NLL+NA KFT   G + 
Sbjct: 560 ISAVESIYRPLCAEKEIEFSLKSNIPPDMMIHSDQVRLNQILFNLLNNATKFTHH-GLIS 618

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +     +    +ISI D G GI E ++  +   F Q          G GLGL I +S++ 
Sbjct: 619 IEFQQKNNHQLFISISDTGIGIREQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIE 678

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             GG   ++S+   G      LP   V +
Sbjct: 679 MLGGAVNVKSQFGVGTTFSVELPLVVVSD 707


>gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 803

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 139/295 (47%), Gaps = 16/295 (5%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            +    L +    +   +  ++   A L        + + +AE+    KS FLA+MSHE+
Sbjct: 337 IHAEESLKRYAEDLKRLKEIEEQNSAHLARVVEELGKAKTQAEDAARTKSEFLANMSHEI 396

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+ AILG++E++  +   P       + +  I R+   LL +IN+ILDLS+IEA +  
Sbjct: 397 RTPMTAILGYTELLLEQ---PDIAPHAADSLQTIRRNADFLLEIINDILDLSKIEADKLT 453

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           +     S I I  +   ++++RA++K +++  +   ++   V  D   +RQ++LNLL NA
Sbjct: 454 IESVRCSPILIANDACALMRIRARDKGLKLVVQTASNVPEFVETDPTRLRQILLNLLGNA 513

Query: 380 VKFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           VKFT + G V + V + +             G   S+ D G G+ + +I  +   F Q  
Sbjct: 514 VKFTHV-GNVQLRVEYVNPQGTQTGNPDALGGLRFSVCDTGIGMTKEQIGRLFQPFTQAD 572

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            +      G GLGL I++ +     G   + S++  G      +   +     P+
Sbjct: 573 TSTTRKYGGTGLGLTISRRLARMMHGDIEVTSQVGVGSVFSLHIDAIKPQFSTPQ 627


>gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1492

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 21/260 (8%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA+MSHE+RTP+N ILG S+++E   +    NE  +  +  + R+GQ LL LIN++
Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLLERTGL----NERQQNLLEVLQRNGQTLLTLINDV 1170

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
            LDLS++EA    +      L  +++         A+EK + I  ++D +L + V  D   
Sbjct: 1171 LDLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFR 1230

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
            ++Q++ NLL NAVKFTA  G + +                S+ D G GI       +   
Sbjct: 1231 LQQILHNLLGNAVKFTAK-GSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEP 1289

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------- 476
            F Q   +      G GLGL I + I+    G+  + S+  +G     ++P  +       
Sbjct: 1290 FIQADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEKAGDSEDV 1349

Query: 477  ----VLNFIPEDNHESTQYK 492
                 L    ED  +S+Q +
Sbjct: 1350 LEAQALQPPAEDAIDSSQAR 1369


>gi|83746249|ref|ZP_00943302.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           UW551]
 gi|83726999|gb|EAP74124.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           UW551]
          Length = 638

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69
           +   + P  + LGL   + ++ D     L          I    VL V  +  ++     
Sbjct: 29  LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 88

Query: 70  PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     G+ W     
Sbjct: 89  LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++A             
Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L   ++F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 207 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +ET    +  +    Q +  L 
Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 315

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 492

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 493 AQPRSEQK 500


>gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
 gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
          Length = 1364

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 145/275 (52%), Gaps = 3/275 (1%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L + + +++    E      EL     + D+ ++  EE    KS FL++MSHE
Sbjct: 540 LAIKNAELTQQSEELVQQSTELVQQSDELARRNRVLDQQKQLLEEATRLKSEFLSNMSHE 599

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S V+ ++    L+ E  + Y+G I ++G+HLL+LIN+ILDL++IE+GR 
Sbjct: 600 LRTPLNSVLALSRVLAVQGAARLSVEE-RGYLGIIEKNGKHLLSLINDILDLAKIESGRQ 658

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           +L   A++   +  E +  L + A EK I +      +L S+  D K +RQ++ NL+ NA
Sbjct: 659 DLFFEAVAPDKVAAEVVDGLAVLASEKGITLALSAPQALPSMVIDVKKLRQMLQNLVGNA 718

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFTA  G V + +    G      ++D G GIA   + ++   F Q   +   + +G G
Sbjct: 719 VKFTAE-GAVTLRLAQL-GNELLFEVEDTGIGIAPQYLDSIFQEFRQADGSTSRSYEGTG 776

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           LGL I +      GG+  + S+L +G      LP 
Sbjct: 777 LGLAIVKKSARLLGGEVAVVSELGKGSVFSLRLPL 811


>gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 720

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 142/265 (53%), Gaps = 8/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   ++A++   ++R+ A+  N  K  FLA +SHELR+PLN ILG+S ++    +   + 
Sbjct: 330 ITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKL---SE 386

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  IHR+ Q    LI ++LD+SRI  G+  L+ S + L   +   +  +QL AQ
Sbjct: 387 AKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLAAQ 446

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K+I +   ++P++  V  D   ++QVI NLLSNAVKFT  GG+V++ +    G    I+
Sbjct: 447 AKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQL-GNVVQIT 505

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           + D G GIA   +  +   F Q   +I     G+GLGL IA+ ++  H G    +S  + 
Sbjct: 506 VSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGVD 565

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
           +G   I  LP    ++  P    +S
Sbjct: 566 QGATFIIRLPL---MSPQPTTTQDS 587


>gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1440

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 16/341 (4%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALS-TQAIMSMHVLDISLAGMLATALSFFTYITYH 206
             L  +  ++ ++   +F      V+ L+       +H+  I                   
Sbjct: 851  GLGTARPASIVILPILFEDLVLGVIELASLSKFSDVHLAFIDQFVNTIGVSINTIIANSR 910

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                  +     +E  +   EL+ + +  +E        +  KS FLA+MSHELRTPLN+
Sbjct: 911  TESLLSESQRLTSELRERSDELQSSNAELEEKAALLATASQYKSEFLANMSHELRTPLNS 970

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +L  + ++     G L ++  + +   IHRSG  LL LI++ILDLS+IEAGR ++    +
Sbjct: 971  LLILARLLADNPDGHLTDQEVQ-FATTIHRSGSDLLQLISDILDLSKIEAGRMDVRPKTL 1029

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
             LI ++       +    ++ +     ++  +   +++DE+ ++QV+ NLLSNAVKFT  
Sbjct: 1030 PLIKLLDYVHATFRPLTIDRGLGFEIAVEKDVPAELYSDEQRLQQVLRNLLSNAVKFTHD 1089

Query: 386  GGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
             G V + V   +                  S++D G GIA  ++P +  +F Q       
Sbjct: 1090 -GSVELRVNRVAGMQFAEETLRNADHVIAFSVRDTGIGIAPEKLPMIFEAFQQSEGTTNR 1148

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I++ I    GG+ +  S+   G      +P 
Sbjct: 1149 KYGGTGLGLSISREIAGMLGGKIVAESEPGVGSRFTLYIPA 1189


>gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1420

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 10/272 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L + +   ++  A     + E           +K AE+ N+ KS FLA+MSHE+RTP
Sbjct: 674 SNMLVQKDDGSMNYIATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTP 733

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           ++ + G   +I    + PL     ++Y+    +S   LL++IN+ILD S+IEAG+ ++ E
Sbjct: 734 ISGVTGLISLILDMPLEPL----QRDYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIE 789

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              SL +I +    +      +K +E    +D ++ S +  D   + Q++ NL+ NA+KF
Sbjct: 790 QDFSLEEIFKNISNLFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKF 849

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G V +                 I+D G GI++     +  +F Q   + K    G 
Sbjct: 850 T-ENGYVALKSEIKEINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGS 908

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGL I + ++    G+  + S+  +G +   
Sbjct: 909 GLGLSITKQLIELMHGKIWLESEEGKGSKFYF 940


>gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1266

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 136/253 (53%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  +    + ++ AE  N AKS FLA+MSHE+RTP+NA++G  +++    + P+  
Sbjct: 505 ISERKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLDPV-- 562

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   +H + + LL +IN+ILD S+IEA R  L      L +++ +   +   +A 
Sbjct: 563 --QRNYAEKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGDQAG 620

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E+F +++P++ S +  D   + QV+ NLLSNA+KFT   G+V +++          
Sbjct: 621 EKGLELFLRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFT-KHGQVGLSITQLGQDPEGV 679

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +  ++D G GI   +   +  +F Q   +      G GLGL I+Q ++A+ GG+  + 
Sbjct: 680 RLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGELRLE 739

Query: 460 SKLREGVEVIAIL 472
           S   EG      L
Sbjct: 740 STPGEGTRFAFEL 752


>gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 1037

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 10/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++     + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 652 ITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 710

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  I  +   LL LI++ILDLS+IEAG  E  ++   L  ++RE   +L L+  
Sbjct: 711 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLS 767

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            EKN+ +  +       + ++   + Q+++NL++NA+KFT   G +         +  Y 
Sbjct: 768 PEKNVTLSFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQE-GSIRFGYKLQDDKMLYF 826

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI E +  ++   F +      +  QG GLGL I Q ++ + GG   + SK  
Sbjct: 827 YVSDTGCGIPEDKQESIFGRFVKL----NNFAQGTGLGLSICQMLVQHMGGNIGLTSKPG 882

Query: 464 EGVEVIAILP 473
           EG      LP
Sbjct: 883 EGSTFWFTLP 892


>gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2040

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 157/309 (50%), Gaps = 24/309 (7%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                            +   L    EK     ++          +  AE  N AKS FLA
Sbjct: 1527 HLEVLHLLAAQAAISIDNAQLYASVEK-----KVAQRTQQLRTAQLEAEHANQAKSDFLA 1581

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            SMSHELRTPLNAILGFS+++  +   P +     E +  I+RSG+HLL+LIN++L LS+I
Sbjct: 1582 SMSHELRTPLNAILGFSQLMAQDARLPQH---LGESLAIINRSGEHLLDLINDVLALSKI 1638

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373
            EAG+  L     +  + ++    MLQLRA+ KN++   +  P +  V  ADE+ +RQ+++
Sbjct: 1639 EAGKTTLQLDTFNFYEFLQAIHGMLQLRAKSKNLDFHFEQSPDIPEVIQADERKLRQILI 1698

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGEIPTVLTS 423
            NLL NA+KFT   GRV + V     +               ++D G GIA+ E+ +V  +
Sbjct: 1699 NLLGNAIKFTEQ-GRVTLRVTNAHSQSEGLTPPDISVLQFEVEDTGAGIAKDELDSVFEA 1757

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F Q    IKS  QG GLGLPI+QS +   GGQ  +RS+   G      LP   VL     
Sbjct: 1758 FVQTQSGIKSR-QGTGLGLPISQSFVQLMGGQLQVRSEEGIGTCFFFNLP---VLVTTTP 1813

Query: 484  DNHESTQYK 492
              H+ +Q K
Sbjct: 1814 VTHKPSQQK 1822


>gi|153832488|ref|ZP_01985155.1| sensor histidine kinase [Vibrio harveyi HY01]
 gi|148871283|gb|EDL70155.1| sensor histidine kinase [Vibrio harveyi HY01]
          Length = 806

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   K                + E   LI +  
Sbjct: 274 RGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDITYDSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTVYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E+  +   +  I+     +      EK ++
Sbjct: 390 HLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSTNSVYHTLCAEKGLQ 449

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
                + P       D+  +RQV+ NLL+NAVKFT   G V V +       Q    IS+
Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GYVEVELTEYVEGQQTRLRISV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI+      +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISPDAQERIFRPFEQAESSTTRRYGGTGLGLAIVKQISEHMGGSITVQSQECIG 568

Query: 466 VEVIAIL 472
            + +  L
Sbjct: 569 TKFVVEL 575


>gi|90413299|ref|ZP_01221293.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK]
 gi|90325700|gb|EAS42163.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK]
          Length = 984

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 174/370 (47%), Gaps = 24/370 (6%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIA---LSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TL    T       I  +A +LI    +  S +  F       LS     + +       
Sbjct: 331 TLTVARTTLISISVIGLAALVLIMWRFVYASVICRFNDYSQALLSLARGDLGIQLDIKGD 390

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----AELEVAKSLSD 236
             +  +  A M+A   +   Y    + +     L    E  + +     +ELE   S  +
Sbjct: 391 DELAHMGRAIMVARDTASERYRLIQVERKIRHELQLHKESLERLVAQRTSELEKTNSRLN 450

Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           E        R  AE+ N AKS FLA+MSHE+RTP+N +LG + ++    +    N+    
Sbjct: 451 EEVVNHDKARNEAEKANRAKSAFLATMSHEIRTPMNGVLGTASLLADTGL----NDQQAR 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I+RSG+ LL+++N+ILD S+IEAG  ++     SL ++V +   ML+ RA  K+I+
Sbjct: 507 YLRVINRSGETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQ 566

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIK 406
           +   ID ++++VW  D   +RQ+++NL+ NA+KFT   G+V + V             + 
Sbjct: 567 LVNHIDDTMNNVWLGDVTRIRQILINLVGNAIKFT-DHGQVTIAVSMNPDMPDELLFEVT 625

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E E   +  +F Q     K+   G GLGL I++ I+A   G+  + S +  G 
Sbjct: 626 DSGIGIEEAEQDILFNAFKQAEEGRKT-IGGTGLGLAISRHIVAAMDGEIGVDSIINVGS 684

Query: 467 EVIAILPNTR 476
                +P  R
Sbjct: 685 CFWFSIPLER 694


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 17/344 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +     +L+A  IS L               ++ A+    +            M     
Sbjct: 173 LLVSGFIILLAFFISILMALRFSKLFLTPMSKLLFAI--DKLKEGDQDTSINEPMRGEFE 230

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-------AELEVAKSLSDETRKRAEEENLAKS 250
                +        ++    Q   D  I        + E      +  +K A++ N  KS
Sbjct: 231 LLRQGLNSIAHNMMLQKDEMQKHIDQAISDYRETLEQYETQNIQLNIAKKEAQDANRVKS 290

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHELRTPLN ++GF+  +    +        K+Y+  I  S   LL +IN+ILD
Sbjct: 291 DFLAKMSHELRTPLNGVVGFTRQLYKTPLNKH----QKDYLDTIELSANSLLAIINDILD 346

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S++EAG  EL      L D V E + +L   A +KN+E+   I  ++  S+  D    +
Sbjct: 347 FSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSLIGDPTRFK 406

Query: 370 QVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           Q+++NL+SNA+KFT  G   + V     + +    +++I D+G GI+  +   + ++FGQ
Sbjct: 407 QILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSGIGISANKQDALFSAFGQ 466

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              +I     G GLGL I + ++   GG   + S + +G     
Sbjct: 467 ADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFTF 510


>gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 632

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + E   E++  I  + 
Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LI++ILDL++IE+G  +   + +S+ +++ E +   +++  + N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +++D   + QVI N L+NA+K+T+  G + +      G     S+ D G G+++    
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +G     + +QG GLGL I ++I+   GG+  + S+L +G       P
Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 6/314 (1%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK- 221
           + L    + +A     ++   +         A        I  ++     K L   AE  
Sbjct: 366 IRLCILALAIASGLGLLIVNWITKSIKKLSTAAYAISHGEINQNVSIQGFKELVILAESF 425

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + +  EL  + +  +   +  +  +  K  FLA+ SHELRTPLN I+G +E +     G 
Sbjct: 426 NKMTKELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGN 485

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           ++ E   + +  I  SG  L NL+N+ILD S++     +L  S++ + ++    +   ++
Sbjct: 486 IS-ELQNKNLSMIVVSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRI 544

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---G 398
             +EK++++   I   L  V ADE  ++Q++ NL+ NA+KFT + G + ++         
Sbjct: 545 ILKEKDVQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTEV-GVITISAELIDLKNN 603

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ D G GI E +   +  SF QG  + +    G GLGLPI + ++  HGG   +
Sbjct: 604 PKMAITVSDTGIGIPEDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISV 663

Query: 459 RSKLREGVEVIAIL 472
           +S    G E    L
Sbjct: 664 KSNPGVGSEFTFTL 677


>gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 632

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 11/235 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + E   E++  I  + 
Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LI++ILDL++IE+G  +   + +S+ +++ E +   +++  + N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +++D   + QVI N L+NA+K+T+ G  +        G     S+ D G G+++    
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +G     + +QG GLGL I ++I+   GG+  + S+L +G       P
Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 869

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 741 PGVELVLRMPESDKIYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 854 VGKGTRFTVRLP 865


>gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
 gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
          Length = 896

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +   A+L+V K   +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE+++      L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E   +   ++  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA+ +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474
                 G GLGL I +      GG   ++S + EG      +P                 
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSIFTVYIPNLPNGLHDVQLSNLEVA 748

Query: 475 TRVLNFIPEDNHEST 489
             V   IP +  E T
Sbjct: 749 ATVDEVIPAEVVEET 763


>gi|150025527|ref|YP_001296353.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772068|emb|CAL43544.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 729

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 10/279 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           ++     L    +  +  ++R E+ + A++ FL+++SHELRTPLNAI G S ++  +   
Sbjct: 331 RNKSNELLRDKNNELEIAKERIEKASKARAEFLSTVSHELRTPLNAINGISHILLDD--- 387

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                   EY+  +  SG HLL  INEIL+++RIE+   E+   + +L +++      L+
Sbjct: 388 -NPKPRQIEYLKSLKFSGNHLLTYINEILEINRIESDNIEIENISFNLKELLNNIQNSLK 446

Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +A++ N      ID     +   D   + Q+ +NL+SNA+KFT   G + V     +  
Sbjct: 447 EQARQNNNHFILTIDNDAPEILIGDPTKLSQIFINLISNALKFT-ENGNIIVNARVVNRD 505

Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    +KDNG GI   +  ++  SF QGS+ I     G GLGL I + ++A   G+
Sbjct: 506 DTSCLVKFEVKDNGIGIPTDKQESIFESFSQGSVEINRKYGGTGLGLTIVKRLLALMNGK 565

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             + S++  G      L  T     IP   +     K +
Sbjct: 566 IEVHSQIGIGSTFTFNLSFTIGQEIIPSTLNNLIDEKIF 604


>gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2232

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 145/315 (46%), Gaps = 19/315 (6%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             +    +V+ + L             + + + K +   ++    +   + +   A+ ++ 
Sbjct: 1751 SSFTQRNVVVLELLCSQIGISLANAMLFHEVNKISASNVTMIEVQKRALVQARQAEEMAR 1810

Query: 237  ETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 A       EE   AKS FLA++SH+LRTP+N I+G SE++    +    ++   E
Sbjct: 1811 IAEAEAIHNIKLKEEAANAKSTFLANISHDLRTPMNGIIGLSELLRETNL----SKDQGE 1866

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            Y+  I      LL LIN+ILD S++E G+ +LS  +++L D + E +  L    ++  +E
Sbjct: 1867 YMESIRICADTLLALINDILDFSKLEVGKMKLSIVSMNLKDTISEVVQALFHANRDNKLE 1926

Query: 350  IFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---- 403
              + +D       V  D   + Q+I+NLLSN+ KFT   G V ++   T    + I    
Sbjct: 1927 TVENLDQIPPDLVVLGDPVRLHQIIMNLLSNSYKFTP-NGSVSISGKVTRAGKRRIRLEC 1985

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKL 462
            S+ D G GI++ +   +   F Q   +   +  G GLGL I ++I+    GG   + S L
Sbjct: 1986 SVSDTGIGISDEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLESTL 2045

Query: 463  REGVEVIAILPNTRV 477
              G  V   +P  + 
Sbjct: 2046 GVGTTVTFHIPFHKA 2060


>gi|171696068|ref|XP_001912958.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948276|emb|CAP60440.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1321

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 672 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 731

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 732 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 787

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  +++ S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 788 LKTLAVKANEKFLDLTYRVNNSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 846

Query: 395 WTS-------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             S              + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 847 KASHVQCAPYEYAIEFIVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 906

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G +    
Sbjct: 907 LVNLMGGDVWVKSEYGKGSKFYFT 930


>gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium]
          Length = 823

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 142/256 (55%), Gaps = 15/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E +  +   ++  K AEE N AK++FLA MSHE+ +PLNAI+GFSE++    +    N
Sbjct: 560 VSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKTPL----N 615

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +T KEY+  I  + Q LL++IN+ILD S+I+A +    E   +L  ++   +++++ +A+
Sbjct: 616 DTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLLVVKGKAK 675

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRG 400
           E N+ +  KID ++  V+  D   ++QVILNLLSNA+KFT   G + ++V          
Sbjct: 676 E-NVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQ-GSIEISVNTEKHFLEDE 733

Query: 401 QYI-----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           Q       S+KD G GI   +   +   F Q   ++     G GLGL IA++++   GG+
Sbjct: 734 QVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARALVERMGGK 793

Query: 456 FLIRSKLREGVEVIAI 471
             + S   +G      
Sbjct: 794 IWVTSSPGKGSTFAFT 809


>gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1572

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +  +       + A++ N AK  FLA+MSHE+ TP+NAI+G + +     +     
Sbjct: 817  INESKALQRELASAIEIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTELTK--- 873

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 YI   HRS Q LL +IN+ILD S+IEAG+ ++      L D++ + I  + ++  
Sbjct: 874  -QQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIKVA 932

Query: 345  EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY 402
            EK +E+   IDP++ ++   D   + Q++ NL +NAVKFT  G  +  V++   +     
Sbjct: 933  EKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLTDDEVT 992

Query: 403  --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               S+ D G G+   +   +  +F Q   +      G GLGL I +++    GG+  + S
Sbjct: 993  LKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMGGEIGVSS 1052

Query: 461  KLREGVEVIA--ILPNTRVLNFIP 482
            ++ +G       + P     +  P
Sbjct: 1053 EVNKGSIFYFESVFPIVEHHDLAP 1076


>gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum]
          Length = 2150

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 145/271 (53%), Gaps = 18/271 (6%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             L       D+ +  ++ + + +  ++ AEE N AKS F+A++SHE+RTPL+ ++G S++
Sbjct: 1354 SLRMAGTLRDMTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDL 1411

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +    +    +E  ++Y+  I +S Q LL +IN+ILD S++E+ + ++     S+I+  +
Sbjct: 1412 LLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQ 1467

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-V 391
              I ML + A   +++I  ++ P++  +   D   MRQV+LN LSNA+KFT+ G  +  +
Sbjct: 1468 AVIHMLSV-AANDDVDILLRVPPNVPRIIFGDAMRMRQVLLNRLSNAIKFTSRGHVLTDI 1526

Query: 392  TV------GWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            +V        T     +  I+I+D G GI +    ++   F Q   +      G GLGL 
Sbjct: 1527 SVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLS 1586

Query: 444  IAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473
            I + ++    GG   + S + +G +   I+P
Sbjct: 1587 ITKRLIEEVMGGTIQVSSIVGQGSKFKCIIP 1617


>gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 843

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 9/256 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              E  ++  +E  + A   N AK+ FL+SMSH++RTP+NAI+G + + +     P   E
Sbjct: 307 ELQERQRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQANLESP---E 363

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I  S +HLL+LINE+LD+S+IE+G+  L+ + ++L D+++E + M +    E
Sbjct: 364 KIRDCLEKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNE 423

Query: 346 KNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400
           K+      I      +V AD   +RQV++NLLSNA+K+T  GG + + +      T  + 
Sbjct: 424 KHQLFRISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKR 483

Query: 401 QY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           QY     DNG GI++  +P +  +F +   +  S  QG GLG+ I ++I+    G   ++
Sbjct: 484 QYEFICTDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVK 543

Query: 460 SKLREGVEVIAILPNT 475
           S+   G  V   +P  
Sbjct: 544 SEEGAGSTVTVSVPLE 559


>gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 642

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 12/272 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             IA+ +  ++ + + R+ AE+ N AKS FLA+MSHE+RTP+N I+G   +  L+++ P 
Sbjct: 249 RDIAKRKALENEARQAREEAEQANRAKSEFLANMSHEIRTPMNGIMGMIHLARLKSVDP- 307

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EY+    +S  HLL ++N++LDLS++EAG+  L     SL   V   +   ++ 
Sbjct: 308 ---AISEYLDLADKSALHLLGIVNDVLDLSKLEAGKIRLFRKRFSLRKEVEAVVEPFRVA 364

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +K++ +   + P L  S+  D   +RQV+ NL+ NA+KFT   GR+ + V        
Sbjct: 365 AGKKDLGLAHTVAPDLPDSIVGDAGRLRQVLTNLVGNALKFTPS-GRIDLRVERAGESAA 423

Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   ++ D G GI       +  SF Q   + ++   G GLGL I++ ++   GG+
Sbjct: 424 GGPQLFRFTVTDTGIGIPAVRFAHIFESFEQAHTSAQALFGGTGLGLTISRQLVELMGGE 483

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             + S   EG      LP       + ED  +
Sbjct: 484 ITVASTEGEGSVFSFTLPLDVAHAVVEEDEAK 515


>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Kim 5]
          Length = 590

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 131/261 (50%), Gaps = 8/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  +    E   RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 169 VTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 225

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +I  I +SG  LL +IN+ILD S+I+AG+  L ++A  + + V +   +L   A 
Sbjct: 226 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAA 284

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EKNIE+  +  P L + V  D    RQ++ NL+ NAVKFT  G   V V      G    
Sbjct: 285 EKNIELLGRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIM 344

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I+D G GI   ++ +V   F Q   +     +G GLGL I   ++   GG   + S
Sbjct: 345 ANIRIEDTGIGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVES 404

Query: 461 KLREGVEVIAILPNTRVLNFI 481
           +  +G      LP       +
Sbjct: 405 QWGKGSVFTVKLPFAVAAAHL 425


>gi|20807497|ref|NP_622668.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516026|gb|AAM24272.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 462

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 12/310 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L F  +  A      +S           L         +     K   K L    E+D+L
Sbjct: 160 LLFILMFFADGAGIFISFVTGYFVTKRALRPVDYMIKEVKDIDAKGLNKRLKVYGEEDEL 219

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               +    + D    R EE    ++RF++  SHELRTP++ I G+ +++  +  G  + 
Sbjct: 220 TRLAKTFNDMLD----RLEESFARQNRFVSDASHELRTPISVIKGYIDML--DRWGKDDR 273

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E I  I +    + +L+ ++L L++ +    +L   +  L +I  E +  ++L  +
Sbjct: 274 EVLEEGIKAIKKETLEMESLVEKLLFLAKGDDRSIKLERESFDLKEIAEEVVREIKLIYE 333

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            KN+ +          + AD+K +++V+  LL NA K+T+  G + + +G  SG   YI 
Sbjct: 334 GKNVSLK----GENVRINADKKLIKEVLRILLDNAAKYTSKNGNIEIEIG--SGDEAYIK 387

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD+G GI E ++P +   F +   A      G GLGL IA+ I+  HGG   ++S++ +
Sbjct: 388 VKDDGIGIPEEDLPYIFERFYRVDKARSKDTGGTGLGLSIAKWIVEEHGGVIGVKSEVGK 447

Query: 465 GVEVIAILPN 474
           G E   +LP 
Sbjct: 448 GTEFTVMLPL 457


>gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 453

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 147/301 (48%), Gaps = 15/301 (4%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-----------EVAKSLSD 236
            L+  L  +  FF Y+     +S       + E  +LI              E    + +
Sbjct: 141 ILSLPLYLSEHFFGYLILQTEQSERSFNPEEIENLELITHQIAIAIKQVQWLERINKI-E 199

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              K+ +  +  KS + + +SHELRTPL  ILGFS+++  E  G L NE  K+Y+  I  
Sbjct: 200 LENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTL-NEKQKQYVNGIRV 258

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG+HLL L+N+ LDLS+IEA + EL    +++ DI    I ++Q +A E+N+++   +  
Sbjct: 259 SGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLSE 318

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            +     D++ ++Q+++NLLSNA+KFT   G V + V           + D G GI E +
Sbjct: 319 QVDFCTVDQRKIKQILINLLSNAIKFTEK-GSVTLQVKKIES-LLTFCVIDTGIGIKEED 376

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q    +    +G GLGL +++ +   H G   + S+  +G      LP   
Sbjct: 377 QQKLFQPFQQIHSNLNRKHKGTGLGLALSRKLAQLHQGNLTLTSEYGKGSCFTLELPLEG 436

Query: 477 V 477
           V
Sbjct: 437 V 437


>gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 963

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 13/282 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASM 256
                 L     ++     E+   + E  +  +   E     RK AE+ N AKS FLA+M
Sbjct: 418 ARAKRDLEDHQTRLEELITERTHQLQETNIRLNEEVENHARARKEAEQANRAKSAFLATM 477

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N +LG +++++ + +        + Y+  I+RSG  LL ++N++LD S+IEA
Sbjct: 478 SHEIRTPMNGVLGTAQLLKDDGLDS----KQRHYVDVINRSGTTLLAILNDVLDYSKIEA 533

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNL 375
           G  ++      +  ++++   ++  RAQEKN+++   I+  +   W  D   + QV+ NL
Sbjct: 534 GFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESDVEQYWHGDATRLAQVLNNL 593

Query: 376 LSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           + NAVKFT   G V + V             + D G GI E E  T+   F Q S  I S
Sbjct: 594 VGNAVKFTDA-GHVDLYVALNPDYEGYILFEVTDTGCGIDEVEQSTLFEPFTQASNGISS 652

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              G GLGL I++ I+   GG+    S L  G      +P  
Sbjct: 653 K-GGTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFTIPME 693


>gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1053

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 142/267 (53%), Gaps = 12/267 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L A++    +   + +++AE  N  KS F+A+MSHELR+PLNAILGFS+++      
Sbjct: 571 NRTLEAQVNQRTAELAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAASGDL 630

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              +   +E +  I+RSG++LLNLIN IL +++IEAG+  L+     L  ++ E   M  
Sbjct: 631 SAAD---QENVEIINRSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFD 687

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG 398
           L A  + +++  +I   +   V  DE  +RQV++NLLSNA+KFT +G   V+V     + 
Sbjct: 688 LEAATRGLKLNFEIPADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTP 747

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GIA+ E+  +  +F Q      S + G GLGL I++  +   GG F +
Sbjct: 748 TTLLFRVQDTGVGIAQSELDLLFKTFSQTQSGQNSQD-GTGLGLAISRQFVQLMGGDFSV 806

Query: 459 RSKLREGVEVIAIL------PNTRVLN 479
            S++  G      +      P  R+  
Sbjct: 807 ESRVGVGTTFSFTIRVNIGEPTARLTP 833


>gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 770

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 169/352 (48%), Gaps = 15/352 (4%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA----- 190
              +       I   +      ML     +    V+V     A    H   +  A     
Sbjct: 179 ARVLPARTAAWIGAPLGRYLALMLTLVAVIGLILVIVHAGAAAGHPEHADTLRAALTSLF 238

Query: 191 ---GMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEEN 246
               ++   +++   +     +   +  + Q    +  IA  +V  +   + ++ AE  N
Sbjct: 239 FILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQAKETAEAAN 298

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           LAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS QHL  LI+
Sbjct: 299 LAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRSAQHLSGLID 355

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DE 365
            +LD+SR+EAGR +   + I L D + + + M++L+A+   +        +L +V A DE
Sbjct: 356 GLLDISRMEAGRLQTYRNEIRLADFLAQIVDMVRLQAEAAGLSFRFTRPDTLPAVVATDE 415

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K +RQ++LNLLSNA+KFTA  G V + + +   +    SI+D G GI E ++  +   F 
Sbjct: 416 KRLRQILLNLLSNAIKFTAE-GEVALEMSYR-SQVAVFSIRDTGLGIPEADLARIFEPFE 473

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +GS+    A  G GLGL IA  +    GG+  + S++ EG      L    V
Sbjct: 474 RGSMPAARAAPGTGLGLTIAHLLAQVMGGEITVESRVGEGTCFRVRLMLAAV 525


>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 1053

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 8/318 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L            + L  +      + +        T       I   +    +    
Sbjct: 206 LTLLKMALPPELAAALTLPLRVEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     +   + A+   +E + +AEE    KS FLA+MSHE+RTP+NAI+G S +   
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P      ++Y+  IH S   LL +IN+ILD S+IEAG+  +     SL +++    
Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
           ++   +A +K +E+   +   +   +  D   + QV++NL++NAVKFT  G   V V VG
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      ++ D G G+ E +   +  +F Q   +      G GLGL I++ ++   
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  + SK   G     
Sbjct: 502 EGEISVTSKPDAGSCFTF 519


>gi|1262210|gb|AAB03699.1| Nik-1 [Neurospora crassa]
          Length = 1281

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++  EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850

Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   T        + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G +    
Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934


>gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 827

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 5/230 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               KS F+A++SHELRTPL AI+GF+E++     G +  E  +E++  I+ +G+ L N+
Sbjct: 595 AERIKSEFIAAVSHELRTPLAAIMGFAELLTS---GEIPLEEGQEFLRIIYDNGRRLKNM 651

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +LD SR+EAGR+E+ +  + L + +R         AQ   +E  ++I P L  V AD
Sbjct: 652 VDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIPP-LPPVEAD 710

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV+ NLLSNA KFT  GGRV +      G    I ++D GPGI E E   +   +
Sbjct: 711 PDRIGQVMGNLLSNAFKFTPKGGRVTLRA-MLEGDSLKIEVEDTGPGIPESERSRLFQRY 769

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G+   A+     G GLGL I+++I+  HGG+  + S++ +G      LP 
Sbjct: 770 GRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLPL 819


>gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
 gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
          Length = 891

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 27/351 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G +   L
Sbjct: 147 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGQM---L 200

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 316

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L   + E II+L   A EK +E+   ++  +   V  D 
Sbjct: 317 DVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQVIGDA 376

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVL 421
             ++Q++ NLL NA+KFT   G + + V   +         + I D G GI+E +   + 
Sbjct: 377 MRLQQIVTNLLGNAIKFTEQ-GNIDILVATQAKTPQQVTLVVEIHDTGIGISESQQAQLF 435

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 436 QAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHL 486


>gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
 gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
          Length = 1411

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 8/271 (2%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +++  I   +A+  D++   +  +         A E + AK+ FL+SMSH++RTP+NAI+
Sbjct: 990  ENHQTICLVRADVTDVLRADQQTREQLKNALTLAREASQAKTDFLSSMSHDIRTPMNAIV 1049

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G +E+       P+      E +  I  + +HLL LIN+ILD+SRIE+G   L +   S 
Sbjct: 1050 GMTELALARRDNPV---QIDESLSVIRTASEHLLRLINDILDMSRIESGHIVLVKELFSQ 1106

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             + V + +      A +K                 D   + Q++ NL+SNAVKFT  GGR
Sbjct: 1107 REEVEKIVTRALALAGKKGQTFSHSFQVRHDKCIGDVLRIHQILENLISNAVKFTPEGGR 1166

Query: 389  VHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + V                + D G GI+  +IP +   F +         +G GLGL 
Sbjct: 1167 VSLAVTELPQKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFRVENLRVGHTEGTGLGLS 1226

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I ++I+   GG   + S+  +G      LP 
Sbjct: 1227 IIKNIVDYKGGTIKVESEPGQGTRFTVDLPL 1257


>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1001

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I +    L+ ++   L    L  A +L+          +        D     +   +  
Sbjct: 229 IAQLLFALMLVTACGLLTLGLVVAGYLTRRINRQIDGLRDGALRMADDDFEQPVEIVSDD 288

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +         ++   ++  +   AEL+ A + +     +AE  + AKS+F+A+MSH
Sbjct: 289 ELGRLAATFNSMQARLREHRSAIEASAAELQQATAAAQALALQAETASQAKSQFMATMSH 348

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N +LG +E++    +G   +   + +   ++RSG+ LL +IN+ILD S+IEAG+
Sbjct: 349 EIRTPMNGVLGMTELL----LGTALDSRQRRFAQAVYRSGESLLEIINDILDFSKIEAGK 404

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            EL+ +  +   +V + + +L  RAQE+ +E+  + +P L   +  D   +RQV+ NL++
Sbjct: 405 LELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGDALRLRQVLTNLVA 464

Query: 378 NAVKFTAIGGRVHVTVGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFG 425
           NA+KFT   G V V +                     + ++D G GI    +  +  +F 
Sbjct: 465 NAIKFT-EHGEVVVEMRRVEPTAAETALATGDRLWVELCVRDTGIGIPPEALSRLFIAFS 523

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           Q S  +     G GLGL I++ ++    G   +RS+   G      LP +   +
Sbjct: 524 QASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLPLSPASS 577


>gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 773

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 19/299 (6%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           LFK      + + E   L   LE             ++ AE  N AKS+FLA+MSHE+RT
Sbjct: 346 LFKDITTRRNAEEELKRLNETLEQRVLEQTGELRSAKEAAEAANRAKSQFLANMSHEIRT 405

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ILG +E+    T+         EY+  + +SG  LL++IN+ILDLS+IE+G   L 
Sbjct: 406 PMNGILGMTEL----TLLMDMPPQAGEYLRLVLQSGHALLDIINDILDLSKIESGHAVLD 461

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                L + +      L + A+EK + ++  ID  +   +  D+  +RQV++N++ NA+K
Sbjct: 462 NKPFRLHECLGSTFNALAITAREKGLSLYHCIDSHVPEHIVGDQGRLRQVLINIVGNAIK 521

Query: 382 FTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           FT  GG V VTVG                + D+G GI +  +  V  +F Q  ++  +  
Sbjct: 522 FTPKGG-VRVTVGRDGQPAPPGSARLLFQVADDGIGIPKDGLGEVFHAFSQIGLSSHTRF 580

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHESTQYKC 493
            G GLGL I++S++A  GG+    SKL +G           V+ +  PE   E     C
Sbjct: 581 GGTGLGLSISKSLVAMMGGRIWAESKLGQGSLFSFT--AEFVVGDATPEPLPEPVPSAC 637


>gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 933

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 12/254 (4%)

Query: 225 IAELEVAKSLSDETRKR--AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           I ++   +   +  R+R   +  + AKS FLA+M HE+RTP+NA++G S +     +   
Sbjct: 430 IEDVTAKREALELRRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSEL--- 486

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+  I  + + LLN+IN+ILD S+IEAG+ EL ++ +SL +++     M  L+
Sbjct: 487 -VPKQRGYLEKICSASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMHHLK 545

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           AQEK ++   ++ P L   +  D   + QV+ NL+ NA+KFT   G V V V        
Sbjct: 546 AQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGNALKFTRR-GEVVVAVKPVEQGEG 604

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  ++D G GI   ++  + T F Q   +      G GLGL I++ ++   GG+  
Sbjct: 605 MVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGELQ 664

Query: 458 IRSKLREGVEVIAI 471
           ++S   +G      
Sbjct: 665 VQSVPEKGSSFSFT 678


>gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 481

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/441 (23%), Positives = 183/441 (41%), Gaps = 26/441 (5%)

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
               IF  W         +   +    +     I    V+     +  I + +  T  T 
Sbjct: 42  VLLVIFGGWVSSCFGFNFSETVIFD--LRFVPLIIAALVYPRSYTLIIIGVAIGLTRFTF 99

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA---------LSTQ 177
                             +L A     +        +  S   + V          L   
Sbjct: 100 GLHMAA-WVGFLNMSILGVLCAGLNYWMRRSTCRLIIKASVTILAVNIVNTLNIACLGVI 158

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKS 233
                    + L   +   LSF   +    F+   +      + ++L++E       AK 
Sbjct: 159 PWRYYVAEVVPLTLPIGIVLSFLFALILRDFQMEQQRNHQIKQANELLSEQRDELQKAKV 218

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           + +E  K+    +  KS F+A+MSHELRTPLN+I+  +++I  E    L+ +   +Y   
Sbjct: 219 ILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKELDEDELDQYSDL 277

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ- 352
           I+ SG  LL LIN+ILDLS++EAG  E+    +S+ +I +  ++  ++ A++KN+E    
Sbjct: 278 IYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVTAKDKNLEFSLK 337

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISI 405
           + +P  + + +D K ++Q++ NLLSNA KFT   GR+ + +           G     ++
Sbjct: 338 EHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHE-GRILLEISTQHLNQKGQEGDWVVFAV 396

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++ +   +  +F Q + +I     G GLGL I++      GG   + S+  +G
Sbjct: 397 KDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEGKG 456

Query: 466 VEVIAILPNTRVLNFIPEDNH 486
                 LP    ++   ++  
Sbjct: 457 STFSLYLPMCPSVSKEADEQP 477


>gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 404

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/390 (23%), Positives = 171/390 (43%), Gaps = 13/390 (3%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
             ++ +       + Y         ++     +  + L            I +   + I 
Sbjct: 22  AVRRALKKAGVAAQFYEATDAEEALELVSETTFDCIFLDYRLPDYDGLDLIKQFKAMGIQ 81

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           + +  L+              ++ A ++  +    V   +L+  L  AL     +     
Sbjct: 82  VPLIVLTGQGDEQIAVE----MMKAGASDYLSKSRVSSETLSQTLRNAL----RVYQAEQ 133

Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++    L  +   + L  +    E  +   +   ++ +E +  KS+FLA+MSHELRTP+N
Sbjct: 134 EAAQANLKLRETNELLKEQNQKLERQRRQIELQNEQLQETSRLKSQFLATMSHELRTPIN 193

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS+++  +   PL      + +  I  + ++LL L+N++L  S+IEAG+  L  + 
Sbjct: 194 AIMGFSQMLLRKYPEPLTCA-QTDLVQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTE 252

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L  +       L+  A  KN+ +  K++     +  D+  +R++++NLLSNA+KFT  
Sbjct: 253 LDLKQLTVLTTEELRSLAVSKNLSLQIKVELENPQIVNDQSCLRRILVNLLSNAIKFTES 312

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V V V         I++KD G GIAE ++  +   F Q    +     G GLGL I+
Sbjct: 313 GG-VWVNVWEMRPDWLAIAVKDTGIGIAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAIS 371

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +S+     G+  + S+L +G       P  
Sbjct: 372 ESLTKMMQGKISVTSELGKGSIFQIEFPRK 401


>gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate
           regulation [Oceanobacillus iheyensis HTE831]
          Length = 453

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHELRTP+ +I GF+E +       + +   KE++  I++    
Sbjct: 225 ELKKLEKMRKDFVANVSHELRTPITSIRGFAETLLDN---NITDPATKEFMEIIYKESHR 281

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI ++L LSR+E   + L      +  +V E +  L  +A+ KN+    ++   L +
Sbjct: 282 LQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQL-T 340

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD+  M+QV++NL+ N++ +T  GG + + +   +    +  +KD+G G+ E     V
Sbjct: 341 MRADKDRMKQVLINLIDNSIHYTPSGGDICLAISEETD-VIHFQVKDSGIGMDEKSQTRV 399

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + I+  H G+  + S L +G  +   +P 
Sbjct: 400 FERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIPK 453


>gi|331269704|ref|YP_004396196.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
 gi|329126254|gb|AEB76199.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
          Length = 455

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 146/305 (47%), Gaps = 10/305 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + +   A +   +    LA ++   +    +IT  + + ++         D+L    + 
Sbjct: 161 YLIVLMLAFVVALIFSSKLANIIVKPIKDLKFITSRIARGDLDRRVDIKSNDELGELSKT 220

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
              ++D    + +     KS+F+A++SHEL+TPL +I GF+E +        NN T   +
Sbjct: 221 FNDMAD----KLQNTLNIKSQFVANVSHELKTPLTSIKGFAETLR----YVENNSTRDRF 272

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +G I    + L  LIN+IL LS IE  +Y      I ++  +++   +++  +++KNI +
Sbjct: 273 LGIIDDEVERLTRLINDILILSDIECNKYLKKSEDIDVVACIKDIYNLMKNYSEKKNIHV 332

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              +  S   +  D+   +++I+N++ NA+K++  G +V + V  T      I ++D G 
Sbjct: 333 NMVVYES-PIICGDKDKFKEMIINIVDNAIKYSENGDQVFIGVK-TEENQCVIWVEDTGV 390

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +  IP +   F +   A      G GLGL I + I+ N  G+  +RSK  +G +   
Sbjct: 391 GIEKEHIPRLFERFYRVDKARSRNNGGTGLGLAIVKHIVLNFNGKIYVRSKFNQGTKFTI 450

Query: 471 ILPNT 475
            +P  
Sbjct: 451 KIPLK 455


>gi|322701064|gb|EFY92815.1| histidine kinase 1 [Metarhizium acridum CQMa 102]
          Length = 1293

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 14/268 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 676 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 735

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 736 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 791

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 792 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 850

Query: 392 TVGWTSGRGQY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           T+   + + +           ++D G GIA+ ++  +  +F Q   ++     G GLGL 
Sbjct: 851 TIKERANQHEVGVGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 910

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++   GG   + S+  +G +    
Sbjct: 911 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 938


>gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519]
 gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii]
          Length = 602

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 3/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F+A++SHEL+TP+  I  +SE +    +   + E  K ++  I      + 
Sbjct: 367 QRLEDMRREFVANVSHELKTPITTIKSYSETLLCGAL--EDKELSKNFVEVIENEADRMS 424

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ ++L LS ++  +       + L +IV + +  L++  Q KN ++  KI      ++
Sbjct: 425 SLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEAVPIY 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD   ++QVI+NLL+NA+K+T   G + ++      +     I+D+G GI + +I  +  
Sbjct: 485 ADRGKIQQVIINLLTNAIKYTPENGNIRISAQVV-DKNAIFQIQDSGIGIPKEDIKRIFE 543

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +       A+ G GLGL IA +I+  H G   + S+L +G       P 
Sbjct: 544 RFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFPV 595


>gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 524

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  +   +    +A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            + 
Sbjct: 278 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 336

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + N+
Sbjct: 337 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 394

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
                      +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ D 
Sbjct: 395 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 452

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G   
Sbjct: 453 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 508

Query: 469 IAILPNTRVLNFIPE 483
              LP   +    P+
Sbjct: 509 WFTLPLKEIKENEPK 523


>gi|322706963|gb|EFY98542.1| histidine kinase 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1293

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 14/268 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 676 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 735

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 736 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 791

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 792 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 850

Query: 392 TVGWTSGRGQY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           T+   + + +           ++D G GIA+ ++  +  +F Q   ++     G GLGL 
Sbjct: 851 TIKERANQHEVGMGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 910

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++   GG   + S+  +G +    
Sbjct: 911 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 938


>gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 524

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  +   +    +A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            + 
Sbjct: 278 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 336

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + N+
Sbjct: 337 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 394

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
                      +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ D 
Sbjct: 395 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 452

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G   
Sbjct: 453 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 508

Query: 469 IAILPNTRVLNFIPE 483
              LP   +    P+
Sbjct: 509 WFTLPLKEIKENEPK 523


>gi|295109066|emb|CBL23019.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 684

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 136/253 (53%), Gaps = 8/253 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++    A+  N AK+RFL +MSH++RTP+NAI+GFSE++E         +   +Y+
Sbjct: 291 EKELEKAVLEAKNANEAKTRFLFNMSHDIRTPMNAIIGFSELLEKHI---DEKDKAIDYL 347

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I  S   LL+LIN +L+++RIE+G+  L +    + +++     + +   ++K I   
Sbjct: 348 GKIKSSSNFLLSLINYVLEMARIESGKLALKKEVGCVTELIESLTDVFEPGVKKKFITYS 407

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIK 406
            + D     V  DE  +R++ +N++ N+VK+T  GG++ V+V       +      I ++
Sbjct: 408 CETDIQHKYVIGDETKVREIFINIIGNSVKYTPEGGKISVSVKEEPFEKENYIAYRIIVE 467

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G+++  +P +   F +   + +S   G GLGLPI +S++   GG   + S+L  G 
Sbjct: 468 DNGIGMSKEYLPHIFEEFSREHTSTESKVTGTGLGLPIVKSLIDMMGGTIEVESQLGCGT 527

Query: 467 EVIAILPNTRVLN 479
            +  +LP      
Sbjct: 528 NMNVVLPFELASE 540


>gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603]
 gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603]
          Length = 968

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 26/332 (7%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L  +           +   +A A      +        +     Q  K+ L   +E    
Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++  ++
Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                 T + Y+  I+RSG+ LL ++N++LD S+IEAG  E+ ++   L  +VRE   ++
Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q RA EK I +  + +  ++  W  DE  + QV+ NL+ N +KFT   G V + +     
Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPD 615

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G   +++D+G GIAE +  ++  +F Q        +QG GLGL I++ ++   GG+  
Sbjct: 616 GQGIRFAVEDSGIGIAEQDQVSLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + S+L +G      LP        P D    T
Sbjct: 674 LSSQLGQGSCFSFTLPLE---PGQPVDTPART 702


>gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 512

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  +   +    +A+E N  KS FLA+MSHE+RTPLNAI+GF+ ++            + 
Sbjct: 266 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 324

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I ++ + LL LI +ILD S+IEAG +++++      +I  E   +  L+  + N+
Sbjct: 325 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 382

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
                      +V++D K + QVI N L+NA+KFT+  G + +     S     +S+ D 
Sbjct: 383 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 440

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +  T+   F + +      +QG GLGL I ++I+   GG+  + S L  G   
Sbjct: 441 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 496

Query: 469 IAILPNTRVLNFIPE 483
              LP   +    P+
Sbjct: 497 WFTLPLKEIKENEPK 511


>gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 891

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             +S       + F  ++  +      D   AE    + L  +    A+  N AKS FL+
Sbjct: 327 HWISLQIIYVENPFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASAKAANRAKSDFLS 386

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTP+NAI+G S +     +   ++ + ++    I  S ++LL+LIN+ILD+S+I
Sbjct: 387 RMSHDIRTPMNAIIGMSTI---GQLKLGDDRSVQDCFRKIDASSRYLLSLINDILDMSKI 443

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373
           E G+ ELS+      +++ E   ++  +AQEK I      +  L   +  D   ++Q++L
Sbjct: 444 ETGKMELSQEYFDFAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYYVGDSLRVKQILL 503

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNA+KFT+  G + + +               ++D+G G+++     +   F Q S 
Sbjct: 504 NLLSNALKFTSADGLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFRSRIFQPFEQESP 563

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I  +++   GG   + S+  +G      +P   V +   ++     
Sbjct: 564 EAARNNVGSGLGLSIVYNLVQLMGGTIEVESEKNKGAAFTVTIPLKLVEDDEQKERQRKQ 623

Query: 490 Q 490
           Q
Sbjct: 624 Q 624


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 2/244 (0%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K +F++ +SHELRTPL AI G+ +V+ L     L  +    Y+  I  +   L  
Sbjct: 2541 EADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQL-SYLNIIKNNTNRLRA 2599

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LI +IL+ SR ++ + +L+ + + +  ++ E +  L+L  + K +++     PSL  V A
Sbjct: 2600 LIEDILEFSRPDSKK-KLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSLPPVIA 2658

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D+K + Q+I NL SNAVK+T  GG + V           I ++D G G++  ++  +   
Sbjct: 2659 DQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLKKLFRP 2718

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F +    ++    G GLGL IA+ ++  HGG+  + S+L +G      +P  +  +   +
Sbjct: 2719 FYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQTKSTDND 2778

Query: 484  DNHE 487
            +  E
Sbjct: 2779 EEVE 2782


>gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
 gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
          Length = 858

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194
           ++  A   I +   A     +  A            +   +        V  + +A   A
Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248
           T       I   +F+ N+  +    +   +I + +       A+  S+  R+ AE+   A
Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ FLA MSHE+RTP+N ILG +++++         E  K  I  +  SG+HLL ++N+I
Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367
           LD S+IE G++ + +   S  D +R    + +   + K +E+  +        ++ D+  
Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVR 597

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422
           + Q++ NL+SNAVKFT   G V +                + I D G GI   ++  +  
Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479
            F Q          G GLGL I ++++    G   +RS+  +G   +  LP     RVL 
Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716

Query: 480 FI 481
            +
Sbjct: 717 PL 718


>gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1516

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/427 (24%), Positives = 179/427 (41%), Gaps = 28/427 (6%)

Query: 90   GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
              +       +G+    R  + V  +  G       L      +   L I     +L  +
Sbjct: 789  AVRFRVGQSLVGQAARSRRAIAVDDVPPGYATISSGLGSTTPASLIVLPIVVEDQVLGVI 848

Query: 150  SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYH 206
             ++++  F L +  FL      + ++  +I++    D  L     + A   +    +   
Sbjct: 849  ELASVHGFTLVHRAFLELLMEQIGVNVNSIVANARTDELLGESQRLTAELQARSEELQAR 908

Query: 207  LFKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASM 256
              +        + +   L+ +    E      ++ R+  E         +  KS FLA+M
Sbjct: 909  QEELQSSNAELEEKAALLVTQNRDIETKNLEIEQARQELEARAQQLTLASKYKSEFLANM 968

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EA
Sbjct: 969  SHELRTPLNSLLILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEA 1027

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            G+ +++   +SL  ++       +    ++N++    + P     +  D+  +RQV+ NL
Sbjct: 1028 GKMDVTPEQVSLRQLIDYVEATFRPMTSQRNLDFRITVAPGSPIELLTDDSRLRQVLRNL 1087

Query: 376  LSNAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            LSNAVKFT +GG + + +               G      + D G GIAE ++ ++  +F
Sbjct: 1088 LSNAVKFTEVGG-IELHIEPVDPERLPRPLRVHGPAVAFRVTDTGIGIAEHQLESIFGAF 1146

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483
             Q          G GLGL I++ I    GG    +S L EG   +  LP  R     +P 
Sbjct: 1147 QQADGTTSRKYGGTGLGLSISREIAQLLGGVITAQSTLGEGSTFVFALPVARPDFAPLPA 1206

Query: 484  DNHESTQ 490
              H  T+
Sbjct: 1207 GEHPGTE 1213


>gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 810

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        +    +EYI  +  + + LL LI++ILDLS+IEAG +    + 
Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + +   E I  + ++   K +E+  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 VDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI E +  +V   F +      +  QG GLGL I 
Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI++  GG+  + S    G       P
Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805


>gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 868

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 11/272 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E    ++  ++ R  AE+    K  FL+++SHE+RTPLNAI+GF+ ++    MG +
Sbjct: 343 RDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTPLNAIIGFTNLL----MGEV 398

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  +EY+G I  +G++LL LIN+ILD S+IEAG+  L ++ +S+ ++  E   ++  R
Sbjct: 399 TDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKAPVSIRELADEISAIMHHR 458

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A EK I     +   L   +  D+  + Q++LN+  NAVKFT   G V + V        
Sbjct: 459 AVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFTEK-GSVKLRVAPIGEPLN 517

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +     +KD G GI + ++  V   F Q + +      G GLGL I +S++    G  
Sbjct: 518 DVQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGTGLGLSIVKSLVQLFEGTL 577

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+L +G       P   V +    D+ E 
Sbjct: 578 NLESELGQGTVFTMDFPFRIVNDAGLHDDIEK 609


>gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
 gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
          Length = 983

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 141/252 (55%), Gaps = 9/252 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E    AE  N AKS FL++MSH++RTP+NAI+GF+ +         N E  ++
Sbjct: 452 KMNQALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNQERVQD 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL D++ +   ++  +   K +E
Sbjct: 509 YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHAKQLE 568

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403
           ++   +D +   V+ D+  + QV+LNLLSNAVKFT  GG V V +          +   I
Sbjct: 569 LYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYPKAVKGSKLYEI 628

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G G+++  +  + + F +   +  S  QG GLG+ I ++I+   GG   ++++  
Sbjct: 629 RVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQG 688

Query: 464 EGVEVIAILPNT 475
           +G E I  LP  
Sbjct: 689 KGTEFIVCLPLR 700


>gi|119468142|ref|ZP_01611268.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
 gi|119448135|gb|EAW29399.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
          Length = 954

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 8/324 (2%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
             F+      + L   ++     + +       + ++        L+  + +      E 
Sbjct: 304 VAFVIKPLSQLTLLLNSMNEGKPITLKNKHAKLSEIASVLKAANTLYLKSEETKQLLDET 363

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L  ++E   +   +  +   + N  K  F+A+MSHELRTP+N ILG  ++++   M  
Sbjct: 364 RALNVKMEAMNTELTQAIEETNKANKTKIDFVANMSHELRTPMNGILGMLQLLQTSNMPV 423

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 ++Y      S Q LL ++N ILD S++++   +L +   +L  IV     +  +
Sbjct: 424 ----KQEQYAKKAFSSAQSLLQVLNNILDFSKLDSDNLKLEKIPFTLDTIVSNVEDLFSI 479

Query: 342 RAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397
            AQ+K + +          ++  D   + Q+I N + NA+KFT  G     + V     +
Sbjct: 480 NAQQKGLALNCVVHADRHLTLLGDPIQLNQIINNCIGNAIKFTDKGEVSLTIEVIFQKEN 539

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 SI D G G+ + +   V  SF QG  +      G GLGL I++ +    GG   
Sbjct: 540 KVQLRFSISDTGIGMTQAQSDRVFESFAQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQ 599

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           ++S+L +G E +  LP T     +
Sbjct: 600 VKSELGKGSEFLFTLPFTIAEQQL 623


>gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 798

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 10/268 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E + LIA+    +      ++ AE  N AK+ FLA+MSHE+RTPLN I+G S V+    +
Sbjct: 262 EMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKL 321

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P+      +Y+  I  S Q LL LIN+ILDLS+IEAG + +     ++ +++ + + + 
Sbjct: 322 TPI----QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSID 377

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTV----G 394
             +A EKN+++   I P + +    DE  ++QV++NL SNA+KFT   G + ++V     
Sbjct: 378 IAKATEKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAMKFTHK-GFISISVSFSNR 436

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +     I++KD+G GI       +L  F QG  +I     G GLGL I   ++   GG
Sbjct: 437 VENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGG 496

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482
              I S+  +G      +    V   +P
Sbjct: 497 ALDIESEQEKGSRFSFRIKTNIVNKKLP 524


>gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 762

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 29/315 (9%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                  +    + +A M+   ++ F  I Y L K N ++LS          E   A+  
Sbjct: 304 VAGLSWVLMQNAVLMATMIIAVIAIFFSIYYQLVKRNTRLLS---------DEKNRAERA 354

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           S+E R+     +LAKS FL+ MSHE+RTP+N I+G + +         + E  +  +  I
Sbjct: 355 SEEARR----ASLAKSEFLSRMSHEIRTPMNGIMGMTAIALEN---AHDEEKARACLEKI 407

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + +HL+ LIN+ILD+S+IE+G+ ++          V     +   +A E+ I    + 
Sbjct: 408 DVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRYKTEE 467

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQY 402
             +L S+   D   + Q++ NL+ NA KFT   G V + +                    
Sbjct: 468 VGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDAIWLR 527

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI       + +SF QG  +      G GLGL I +      GG+  + S++
Sbjct: 528 FSVTDTGCGIKPENRERIFSSFEQGDESSCRR-GGTGLGLAITKRFAEMMGGRISLSSEV 586

Query: 463 REGVEVIAILPNTRV 477
            +G      +P  R 
Sbjct: 587 GKGSTFTVDVPFGRA 601


>gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 617

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGGGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI E +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTINIQSEIGKGSEFIINIPIKLVKEDLEKENN 593


>gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1276

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 166/401 (41%), Gaps = 18/401 (4%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
             +      +        R  + V    +     +  +V     T   L  Y     +  
Sbjct: 393 ANRAQAVVALTTELAGAARRIVAVKSDMLSNDVAMQRIVADVDTTANRLAAYTEQEAVRV 452

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
                     +  AV  +F  ++VA+S    +   V+   L   +A  LS  T     + 
Sbjct: 453 DLQQRGIVSDVYRAVTSAFL-MIVAVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIR 511

Query: 209 KSNVKILSC----QAEKDDLIA-------ELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +   L      + E   LIA       E+E            AE  N AKS FLA MS
Sbjct: 512 SGSDLSLRMSHKGRDEIAALIAGFNMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMS 571

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +E+++   +        ++++  ++RSGQ LL +I++ILD S+IEAG
Sbjct: 572 HEIRTPMNGVLGMTELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           +  L     +L  ++ + + +++  A+ K +E+  +   S+   +  D   +RQ++ NLL
Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT   G V ++  ++        I D+G GIA      +   F Q   +      
Sbjct: 688 GNAIKFT-EHGHVGLSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYG 746

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           G GLGL I++ +    GG   + S   +G       P    
Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTTPFEPA 787


>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
           degradans 2-40]
 gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1109

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 147/345 (42%), Gaps = 14/345 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            S + L+  ML    F +    V+A      ++  +  I++         F   +     
Sbjct: 322 ASSNWLAGVMLLSVWFTAMLLSVLAFFLSIRITNPIKAITIVANKLVKGDFSQRVQVQES 381

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                + +   E        E+        +  AE  + AKS FLA MSHE+RTP+N +L
Sbjct: 382 NEFGLLANSFNELIQSRKYYEL---ELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVL 438

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G   ++   ++ P      +  +     SGQ LL++IN+ILD S++EAG+ EL       
Sbjct: 439 GMLGLVLNSSLTP----EQERKLLLAQSSGQSLLSVINDILDYSKVEAGKLELEHLDFDP 494

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ + +      AQEK IE+           +  D   +RQ+I NLLSNA+KFT+  G
Sbjct: 495 HRLLSDVVQSFNYSAQEKGIELVLDDIGLGGKVLRGDPSRLRQIINNLLSNALKFTSQ-G 553

Query: 388 RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            + V     S          S+ D G GI   +I  +  SF Q   +      G GLGL 
Sbjct: 554 EIIVRAKLDSEINGLNQLRCSVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLS 613

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           I + +    GG   + S++ +G     ++      + +P DN ES
Sbjct: 614 ICKMLTRIMGGDIFVVSEVGKGTRFDFVVHVE-TGSCLPVDNAES 657


>gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
          Length = 858

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194
           ++  A   I +   A     +  A            +   +        V  + +A   A
Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248
           T       I   +F+ N+  +    +   +I + +       A+  S+  R+ AE+   A
Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ FLA MSHE+RTP+N ILG +++++         E  K  I  +  SG+HLL ++N+I
Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367
           LD S+IE G++ + +   S  D +R    + +   + K +E+  +        ++ D+  
Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVR 597

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422
           + Q++ NL+SNAVKFT   G V +                + I D G GI   ++  +  
Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479
            F Q          G GLGL I ++++    G   +RS+  +G   +  LP     RVL 
Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716

Query: 480 FI 481
            +
Sbjct: 717 PL 718


>gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 607

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 16/300 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                  V+ +   A +              ++ R  A   +  KS+FLA+ SHELRTPL
Sbjct: 307 RRWSAVEVEFVRELAVQVGTAIAHATLYQELEQARAEAVALSQLKSQFLANTSHELRTPL 366

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LGF +++        + E   ++I + +RS  HLLNLIN++LD+++IEAG+ EL  +
Sbjct: 367 NGMLGFLKLVMDGM--ADDPEEEHQFIQEAYRSALHLLNLINDVLDIAKIEAGKMELELT 424

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382
            I + ++++E     Q + Q+K +    +         V+ + + + QV+LNL+ NA+KF
Sbjct: 425 PIKINELLQEVENFTQAQLQQKQLNFKIQKPATQDEIIVYGNYQRLLQVMLNLVGNAIKF 484

Query: 383 TAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG + +++                   I + D G G++  +   +  SF Q      
Sbjct: 485 THEGG-ISISMELIKKKIVIQNRELPGLVKIRVADTGIGVSLDKQDKLFQSFFQVDGDRT 543

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
               G GLGL I+Q ++    G     S     G  V   +P  +    I   + E+ ++
Sbjct: 544 RQYGGTGLGLAISQKLVEAMRGTVNFYSMGEGLGSTVTFTIPLYQEPIMISTQSAETIEF 603


>gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 725

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 179/433 (41%), Gaps = 10/433 (2%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
           V S  R  P   L +L+V  +            W    LAV A  L L   V +      
Sbjct: 125 VTSPGRPGPPAALNMLIVGAVL-IGLDARRRFAWLAQVLAVAATALGLLGVVGHVYGVTL 183

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
                     V  IA     +LL L               +     A S  A    +   
Sbjct: 184 LYGQA----TVTGIAFPTALSLLALDVGLLCARPDRGFVANVASTGAGSALARRLLVYVL 239

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            + +      +A++         + + +  +    +         + +     +  Q E+
Sbjct: 240 LLPVLLGGASLAVADAGEGGGLAVSLLVVVLSLLFVVLVLRDAVAIDRMEAGKIRAQQER 299

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                EL  A     + R  AE  N AK  FLA++SHELRTPLNAILG+S ++      P
Sbjct: 300 AASREELAHALRREQDARAHAESANRAKDEFLATLSHELRTPLNAILGWSGLLRDAGGDP 359

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E     +  I R+G+ L  L++++LD+SRI AGR E+  + + L+ +V + I  ++ 
Sbjct: 360 ---ERLARGLAVIDRNGRTLAQLVSDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRA 416

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A+ K + I +   P L  V  D   +RQV  NL+SNAVKFT  GG V V +G   G   
Sbjct: 417 AARAKGVAISRSAGPELPRVVGDAGRLRQVAWNLVSNAVKFTPPGGSVDVRLGR-EGGAA 475

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + +KD G G++   +P +   F Q   +      G+GLGL I + ++A HGG     S 
Sbjct: 476 VLEVKDTGVGMSRDFLPIMFDPFVQAEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESD 535

Query: 462 -LREGVEVIAILP 473
               G     ++P
Sbjct: 536 GPGRGSTFRVLVP 548


>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 653

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 23/334 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            A+ +     +V +    ++                L           + +  +   QA+
Sbjct: 91  LAINMQLQGQMVYVVETNLIFFLGSLWVTEIHELKPLGLRLNHFAVHDRVSDFLFLLQAK 150

Query: 221 KDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              L    ++A   + +    ++ AE  NLAKS FLA+MSHELRTPLNAILGFS+++   
Sbjct: 151 NTALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLSR- 209

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                    +   +  I+ SG+HLL L+N+IL++S+IEAG+  L  +  +L   +     
Sbjct: 210 --DSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYN 267

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-- 394
           + Q +   K I +  +   ++   + AD K +RQV++NLL NA+KFT   G+V++ V   
Sbjct: 268 LFQQKVFSKKINLKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNE-GQVYLKVASR 326

Query: 395 -----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ--GVGLG 441
                               S++D GPG++E +   +   F Q     +S +   G GLG
Sbjct: 327 IYLDDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLG 386

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L I++  +   GG+  I S+L +G      +P  
Sbjct: 387 LSISRQFVNLMGGELSISSQLNKGATFSFSIPVK 420


>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1021

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 155/409 (37%), Gaps = 18/409 (4%)

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            A    L  +     +        R++    +        +  +        +   +  S
Sbjct: 347 IAVMWLLLVRFHRRVLAPVYARSARVFD--SEALCRSVIAMAPVGIGLVSLSDRRVMLAS 404

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             L+  L      +  L   V   +   V        +   +   +              
Sbjct: 405 DALVQMLLPHGGDHHALSARVLERYDAFVADGGRGRTLVTELAVDAHGDAPLHLEIIAHA 464

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
             Y      + + +    +  L+          +E  + A+  N AKS FLA+ SHE+RT
Sbjct: 465 ARYQGEDVLIAVFTDTTAQRRLV-------QQLEEAVRAADSANAAKSSFLAATSHEIRT 517

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILG  E++E   +    + + +  +  +  S + LL ++++ILD S+IEAG   + 
Sbjct: 518 PLNVILGNLELLERTAL----DASQQSRVRTLRASAEGLLAIVSDILDFSKIEAGAMSVE 573

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
                LI ++ + +      A+ K + +F +ID S+   +  D   + QV+ NLLSNA+K
Sbjct: 574 SIEFELIAVIEQQLAAFAPIAKAKGLPLFVEIDASVEQRMRGDPTRLAQVLGNLLSNAIK 633

Query: 382 FTAIGG-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT+ G     V V   +       +S++D G GI   +   +   F Q   +I     G 
Sbjct: 634 FTSEGHIAARVAVWPDARGVPEVELSVEDTGIGIEPTQRARLFKPFSQVDASITRRYGGT 693

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVLNFIPEDNH 486
           GLGL +   ++   GG   + S  + G      LP    +    P D  
Sbjct: 694 GLGLALCDRLVTAMGGTLSVESTPQVGSVFSVHLPLQADIAPTRPLDAS 742


>gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 837

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 22/355 (6%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           ++  ++ + +   + ++ +PV +  +        ++    AG +A  +S          +
Sbjct: 185 AVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVSLRIKHREGDLR 244

Query: 210 SNVKILSCQAEK----------DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                L                   I+E   A+   +  ++ AE  + AKSRFL++MSHE
Sbjct: 245 WVSLSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHE 304

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+ AILG +E++     G   +   +E++  I RSG  LL LI++IL +S+ E  + 
Sbjct: 305 IRTPMTAILGVAELMS----GTHLDRVQREHVSIIRRSGDALLELIDDILVISQNEGAQE 360

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
              +    +  ++   + M   RA EK I++   +   +   V  D   +RQV++NL+ N
Sbjct: 361 GEKQVVFDVDHLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGN 420

Query: 379 AVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+KF+   G V + V      G        S+ DNG GI   +   +  +F Q       
Sbjct: 421 AIKFSEK-GEVVIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESR 479

Query: 434 AEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              G GLGL I + ++   GGQ   + S+   G      +P    +      N E
Sbjct: 480 RFGGTGLGLTICRRLVNLMGGQLELLFSEPGVGSTFAFDIPLQPAMEQANPANLE 534


>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 786

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 9/257 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             +   +  A + S E+  +AE  + AKS FLA+MSHE+RTP+N +LG +E++    + P
Sbjct: 212 RPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTP 271

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 K +   I +SG  LL +IN+ILD S+I AG+  L  +   L + V +   ++  
Sbjct: 272 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSA 327

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           R  EKN+E+  ++DP L   V  D    RQ++ NL+ NAVKFT   G V + VG  +   
Sbjct: 328 RVAEKNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEK-GHVLIDVGGETVND 386

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D G GI   ++  V   F Q   +     +G GLGL IA  ++    G+  
Sbjct: 387 VVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 446

Query: 458 IRSKLREGVEVIAILPN 474
           + S++  G      +P 
Sbjct: 447 VESEIGRGSVFWFAVPL 463


>gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1204

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I EL+  +    + ++ AE     K  FLA+MSHE+RTP+N ++G  +++    +   
Sbjct: 666 RDITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIRTPMNGVIGMIDLLGETPL--- 722

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   K+Y+  I RS + LLN++N+ILDLS+IEAG+ EL E+ I++ +++ + + +    
Sbjct: 723 -NTEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQT 781

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+ K   +   + P +   + AD+  + Q++ NL SNA+KFT   G V V +      G 
Sbjct: 782 AKSKGNTLSYHVGPDIPKFIIADQTRLLQIMSNLTSNALKFT-ENGSVKVFLTLVKKDGL 840

Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           +    + ++D+G GI+  +   + TSF Q   + + +  G GLGL I++ + A   G+  
Sbjct: 841 FHKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIG 900

Query: 458 IRSKLREGVEVIAIL 472
           + S L EG       
Sbjct: 901 VESTLGEGSTFWFTF 915


>gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
 gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae]
 gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
          Length = 1082

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 149/341 (43%), Gaps = 26/341 (7%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224
               V+        +     ++A  L + +  F  IT      +      +    E D L
Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMAANLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             ++        E        R+ AE  N AKS FLA+MSHE+RTPLN I+G +++    
Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++     +  +E +  ++     LL +I++ILD+S+IEA R  + +   SL   V   + 
Sbjct: 516 SLDTELTQYQREMLSIVNNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGNVFGALK 575

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            L ++A EKN+++  + D S    +  D   +RQVILNL  NA+KFT   G+V V+V  +
Sbjct: 576 TLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKK-GKVSVSVKKS 634

Query: 397 S-----GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                      +   + D G GI   ++  +  +F Q   +      G GLGL I++ ++
Sbjct: 635 DVTPADSDKLLLEFNVSDTGIGIERDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLI 694

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              GG+  + S    G      +    V     +   ES Q
Sbjct: 695 QLMGGEIWVTSDYGHGSCFSFTV---SVSQSKIKYTSESEQ 732


>gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 540

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 138/261 (52%), Gaps = 9/261 (3%)

Query: 219 AEKDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           +E    +     A  L  E    R +AE  N +KS FLA+MSHE+RTP+ AILG+++++E
Sbjct: 114 SEIKARVRNAIRALQLLREQKTLRIQAEAANQSKSAFLANMSHEIRTPMTAILGYTDILE 173

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           LE       E   + +  I R+G HL+ LIN+ILDLS+IEAG+ ++     S   IV E 
Sbjct: 174 LEAKSLQLPELISDSLDTIKRNGGHLMELINDILDLSKIEAGKLDVESICCSPQTIVEEV 233

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + ++Q+RA+ K +++       L   + +D   +RQ+++NL+ NA+KFT + G + +   
Sbjct: 234 LELVQVRAEAKGLKLEASYQFPLPAEIHSDPTRIRQILINLIGNAIKFTEV-GTIRLNTS 292

Query: 395 WTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +    G       ++ D G G+ E ++  +   F Q   +      G GLGL I + +  
Sbjct: 293 FLENPGEEPQVQFTVIDQGIGMTEAQMSNLFRPFSQADSSTTRKYGGTGLGLTICKRLTD 352

Query: 451 NHGGQFLIRSKLREGVEVIAI 471
             GG   + SKL +G +  A 
Sbjct: 353 VLGGDISVTSKLNQGSQFSAT 373


>gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 574

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           K+ L   +E+        R+ +E  N AKS FLA MSHELRTPLN++LG  +V++   M 
Sbjct: 187 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 246

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                 +   +  +  S   LL +I++ILDLS+IE+G + LS   I++ D V   +   Q
Sbjct: 247 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 302

Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           L A  K + I   I+       W D   + QV+ NL+ NAVKFT   G++ + V      
Sbjct: 303 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 360

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GI + +I ++ T+F Q   +I     G GLGL I + ++    G   + 
Sbjct: 361 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 420

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G   +  +P  
Sbjct: 421 SQFGKGSTFVVKIPVK 436


>gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1232

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I E    +      +++AE  N AKS FLA+MSHE+RTP+N ++G  ++  ++ +   
Sbjct: 821  ADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDLSLMQKLPT- 879

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 +EY     +S  HLL++I +ILDLS+IEAGR EL+E    + D+V   +  L L 
Sbjct: 880  ---RVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALT 936

Query: 343  AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
            A +K +++   +D  +  +   D   +RQV+ NL+SNAVKFT   GRV V V  T     
Sbjct: 937  AADKGLKLLHAVDADIPPLLCGDPVRLRQVLANLVSNAVKFTHK-GRVLVNVERTGHDLP 995

Query: 400  ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    S+ D G GI   ++  +  SF Q   A  +   G GLGL I++ ++   GG 
Sbjct: 996  RDEVRLLFSVSDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGH 1055

Query: 456  FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              + S + +G      +   R  + +P+     T+
Sbjct: 1056 IGVESVMGKGSRFFFTV-RLRKADAMPKAERSETE 1089


>gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 1167

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 6/373 (1%)

Query: 106 WRIWLLVGQIAIGLCW-TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
               +L+  +  G     ++ L  PG        +    +  I  S++A         V 
Sbjct: 341 APRTVLLLPVMNGGIVNGVVELGLPGAPDERASQLLDVVSDDIGTSLAAARYREQLQDVL 400

Query: 165 LSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                +   L  Q        +     +  L  + +        L ++N ++       D
Sbjct: 401 AETQQLNEELQVQQEELRTANEELEEQSKALRASQAMLENQQAELEQTNSQLSERTEALD 460

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                L   +   ++     +  +  KS FLA+MSHELRTPLN+ L  ++++     G L
Sbjct: 461 QRNTALRRVQRDLEDRADELQRASRYKSEFLANMSHELRTPLNSALILAKLLGDNPQGNL 520

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  K +   I+ SG  LL LIN+ILD++++EAG+ E+    +SL  +           
Sbjct: 521 TLEQVK-FAESIYSSGNDLLVLINDILDIAKVEAGKLEVVPEDVSLARLAESLESTFSPL 579

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +KN+    ++ P   + +  D + + Q++ NLLSNA+KFT   G V + V  T+  G 
Sbjct: 580 AMQKNLSFRLELQPGAPASLVTDRQRVEQILKNLLSNALKFTDK-GEVALVVSATADGGA 638

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D+G GI   +   +  +F Q          G GLGL I++ +    GG   ++S+
Sbjct: 639 AFAVSDSGIGIDAQQHELIFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLGGTLTVQSE 698

Query: 462 LREGVEVIAILPN 474
             +G   +  LP 
Sbjct: 699 PGKGSTFVLQLPA 711


>gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 539

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 11/273 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + +  ++   E ++ AE    AKS FLA+MSHELRTPL +++GFS +++       
Sbjct: 134 RDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQ---GSEH 190

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+  I  + + LL +IN+ILD S++EA   E+         +V     +++ +
Sbjct: 191 LPPEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQ 250

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGR 399
              K + +   +       +  D+  +RQV+LN LSNAVKFTA  G V +T+   +    
Sbjct: 251 CSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTAR-GEVTLTLDGRFDESG 309

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              +   + D G GI   +I  +   F Q   +      G GLGL I++ ++   GG+  
Sbjct: 310 LWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEIG 369

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + S   +G       P    +     D  E+ Q
Sbjct: 370 VDSTPGQGSTFWFEAPLA--VAEAENDAVETRQ 400


>gi|261252516|ref|ZP_05945089.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
 gi|260935907|gb|EEX91896.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
          Length = 810

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 10/308 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            V+V +    +M  + L           ++     +      ++K  +   E   LI   
Sbjct: 274 AVIVPIMLVFVMLGYFLINRFLISPVVVVARSVQESKEGGSIDLK-YNSNDEIKYLIDSF 332

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  +E + +A+    AKS FLA++SHE+RTP+N +LG ++++    +        +
Sbjct: 333 NQKTVYLEEEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTDLTS----EQR 388

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  ++ SG+H++ L+NEILD S++E G  EL  +   L  I+     +      EK +
Sbjct: 389 KHMKTLYESGEHMMTLLNEILDFSKVEQGHLELERAPFPLEAIIGSINSVYYTLCSEKGL 448

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404
           +     + P       D+  +RQ++ NLL+NAVKFT+  G V V     +  G+    I 
Sbjct: 449 QFKVYSEVPESRWYRCDKARLRQILFNLLNNAVKFTSR-GYVEVGFKEQTRNGRNFLVIQ 507

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI +     V   F Q   +      G GLGL I + +     G+  + S++  
Sbjct: 508 VRDTGIGIDKAVQDKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCDLMDGEIKLTSEVGI 567

Query: 465 GVEVIAIL 472
           G      L
Sbjct: 568 GSCFEVAL 575


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +   + L AE+    +     +K AE  N+AKS FLA+MSHE+RTP+N I+GF++++ 
Sbjct: 165 QQRNYSETLQAEIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNGIIGFTDMLL 224

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +E  +E+   I RS   LL+LIN+ILD S++EAG+ +L           ++ 
Sbjct: 225 DTGL----DEEQQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFDPEITAQDV 280

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +++ +   + IE+  +ID +L + V  D    RQV++NL+ N+ KFT   G + + + 
Sbjct: 281 CDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTKK-GELELAIA 339

Query: 395 WTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                 + I+    I+D G GI E ++ ++  +F Q   +      G GLGL I + I A
Sbjct: 340 VDDETEETITLHARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLSICRKIAA 399

Query: 451 NHGGQFLIRSKLREGVEVIAI 471
              G     S+L  G      
Sbjct: 400 LMHGHVWAESELDVGSTFHFT 420


>gi|295094505|emb|CBK83596.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 624

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 185/441 (41%), Gaps = 35/441 (7%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +     +     ++      +                    +L + KK++ +        
Sbjct: 56  MVDAGLVRMPAAVVFVLNCGFMIAETFVTYEWFYFFESIQNSLFVEKKIIRAL------- 108

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--------IALSISALSN 156
                +L+  + +   WT        T       ++    +L        +  +I     
Sbjct: 109 RSIPLVLMIVLCVVSWWTGWLFYVDDTGMYRRGALFALQVVLPYTYVFVTLVSAIVYSIT 168

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                +  +    ++ AL    +  +      LAG+  +A+  +           +++  
Sbjct: 169 RREKRSAVIITIALIPALICSVLQIVAGGSYVLAGLTLSAMFVY-----------IELCM 217

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               K + +  +E A    +     A + N AK+ FL SMSH++RTP+NAI+GF++++  
Sbjct: 218 EDIRKVEKLEVIEKANHELENALDMANKANNAKTVFLNSMSHDIRTPMNAIIGFTDLLND 277

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 + +  ++YI  I  S  +LL+LIN +L+++RIE+G+ EL ES+ISL  +     
Sbjct: 278 NL---SDQDKARDYIAKIRSSSDYLLSLINNVLEMARIESGKTELDESSISLKSL-DSVY 333

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
            + + + +EKNI+    ++   +++  D   ++++++N+++NA K++  G  V V +   
Sbjct: 334 WLFESQMKEKNIDFTWNVNVKHNNILCDVVKIKEILMNIINNAYKYSLPGDSVAVKIDEL 393

Query: 396 --TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                    I   + D G G++E  +  +   F +   + +S + G GLG+ I + I+  
Sbjct: 394 PCDRDGYVRIRTVVSDTGIGMSEDFLEHIFEDFSREQTSTESGQFGTGLGMAIVKKIVDL 453

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
            GG   ++S+  +G      L
Sbjct: 454 MGGDIDVQSEPGKGTTFTVTL 474


>gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 563

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H   + ++++   A++              ++    AEE +  KS FLAS +HELRTPL
Sbjct: 276 RHWRPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPL 335

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+GF  ++        +++  +E++ + H+S  HLLNLIN+ILD+++IEAG+ +L   
Sbjct: 336 NGIIGFLRLVLDGM--ADDSQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEVG 393

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKF 382
           ++ L ++          +AQ K +    K  P+L+ +  + + + + QV+LNL+SNA+KF
Sbjct: 394 SVELAELFEAIDNFTLPQAQRKRLNYSSKYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKF 453

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG + +T                    + + D G G+A  +   +   F Q   +  
Sbjct: 454 THDGG-IDITAEIVKKKLYWRDREFPGMIKVRVSDTGIGVALEKQAKLFEKFVQVDGSHS 512

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476
            A  G GLGL I+Q ++   GGQ    S     G  V   +P  +
Sbjct: 513 KAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 557


>gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 762

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++    K      +  AE+ N AKS FL++MSHE+RTP+N I+G + ++    +    N
Sbjct: 363 ISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNGIIGMTGLLLETPL----N 418

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E+   I  S   LL +IN+ILD SRIEAG+  +   A +L   V  CI ++  +A 
Sbjct: 419 TEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFALPATVAGCIDVIAGKAC 478

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +   IDP+L   V  D   +RQ++LNLL NA+KFTA  G+V + V          
Sbjct: 479 DKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTAT-GKVALHVTPVLAGAVRF 537

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+G GI +     +   F Q   +I     G GLGL I + ++   GG     S   
Sbjct: 538 VVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFESVPG 597

Query: 464 EGVEVIAILPNTRVLN-FIPEDNHE 487
           +G      LP         P+ + +
Sbjct: 598 QGATFWVELPLAVAEPVSAPDVDAQ 622


>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
 gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
          Length = 1611

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 11/265 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            +++ + A+      ++ AEE    KSRFLA+MSHE+RTPLNAI+G S +     +    +
Sbjct: 857  VSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKSGL----D 912

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 Y+  + ++GQHLL +IN+ILD S+IEAG+  +  S  +L  ++     ++  +A 
Sbjct: 913  ARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGFKAA 972

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
             K +E+   + P +   +  D   + Q+++N  +NAVKFT   G +H+ V      G   
Sbjct: 973  AKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQ-GEIHLLVRLERNEGARV 1031

Query: 403  ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G GIA  ++  +  SF Q   +      G GLGL I++S+    GG+  +R
Sbjct: 1032 WLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVGVR 1091

Query: 460  SKLREGVEVIAILPNTRVLNFIPED 484
            S+L  G      +P  R    +P  
Sbjct: 1092 SELGHGSAFWVTVPLER-GEPLPRA 1115


>gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
 gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
          Length = 979

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 12/251 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E +  +      R++A E    KS FLA+MSHE+RTPLNAI+GFS ++        +
Sbjct: 593 LITERKRQEKALIAAREKALESERLKSAFLANMSHEIRTPLNAIVGFSSLL----TATED 648

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  +E+I  I  + Q LL L+++ILDLS+IEA   E +   + L  + ++    ++ R 
Sbjct: 649 EQEREEFISIIENNNQLLLQLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRL 708

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  N+ +      +   V  ++  + QV++NLL NA KFT   G +        G+  Y 
Sbjct: 709 K-PNVVLEFIPGAAQCHVQTEKNRLSQVLINLLVNATKFTQT-GSITFGYEIR-GKELYF 765

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            +KD G GI++ +   +   F +      +  QG GLGL I ++I+    G+  + S+  
Sbjct: 766 YVKDTGMGISQEDQNKIFERFTKVD----TFTQGTGLGLSICKNIIEKMKGRIGVESEGK 821

Query: 463 REGVEVIAILP 473
            +G      +P
Sbjct: 822 GKGSTFWFTVP 832


>gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 2508

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 142/291 (48%), Gaps = 20/291 (6%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRF 252
            AL+            ++  L  +A    L AE + AK    E ++    AEE   AKS F
Sbjct: 1898 ALAMKAVEKVSAENVSMVALQKRALAKALEAETK-AKHAEAEAKRNVKLAEEAAKAKSIF 1956

Query: 253  LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            LA++SHELRTPLN ++G SE+++   +    ++  +E   +I  S + LL +IN+ILD S
Sbjct: 1957 LANVSHELRTPLNGVIGNSELLKDSEL----DKDQQEMADNIKVSAELLLTVINDILDFS 2012

Query: 313  RIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            R+EA + +L   A +  ++VRE +  +    + + ++KN++I Q I+     ++ D   +
Sbjct: 2013 RMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQKTKQKNVKIIQDINLPSMLIFGDPIRL 2072

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSF 424
             QV+ NL+SN++KFT   G + +     S           ++D G GI + ++  +   F
Sbjct: 2073 HQVLGNLISNSLKFT-EDGSITIGARVESETNDKATLLFRVQDTGIGIPQQQLVKLFQPF 2131

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAIL 472
             Q   +      G GLGL I +S++     G+  + S+   G         
Sbjct: 2132 SQADTSTARKYGGSGLGLSICKSLIETMMKGKIQLDSQEGVGTTAWFKVTF 2182


>gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 587

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TP+ +I GF E ++   +   +      ++  I    +
Sbjct: 360 RKLE---QLRTEFVSNVTHELKTPITSIRGFIETLKSGAINKPDVSE--RFLDIIDIEAE 414

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE    +    + SL  I+     +++  A EKN+ +   +D  + 
Sbjct: 415 RLHELINDILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKIL 474

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   M+Q++LNL+ NA+K+    G V V      G    IS+KD G GI    IP 
Sbjct: 475 -IKANRNRMKQLVLNLVDNAIKYNIPTGSVTVDAQRV-GGKVVISVKDTGIGIPPDHIPR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +          G GLGL I + I+  + G   + S++ +G E I  LP
Sbjct: 533 IFERFYRVDKGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLP 586


>gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 921

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE  K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        N 
Sbjct: 514 ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 569

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   +  + + LL LINEILDLS+IE+G  E + + I++  + +E       R  
Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  +++  +   +   +  D+  + QV  NL+ NA KFT  G    ++ G+   G     
Sbjct: 630 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 685

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   +I  V   F + +       QG GLGL I ++I+   GG+  + S + 
Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 741

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 742 QGTTFTFTLP 751


>gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +       E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    ++L + + +        A+EK + + + I  S      
Sbjct: 418 LVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDIAVSQPECVF 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T  GG VH+           I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL I ++I+  HGG   + S + +G      +P  
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFTFYIPTK 588


>gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase
           [Pseudomonas fluorescens SBW25]
          Length = 464

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 160/356 (44%), Gaps = 30/356 (8%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               L   +     P   AL  +A   +  +          +          L      I
Sbjct: 106 RAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTALRNRYDTI 165

Query: 215 LSCQ------AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +           +    AE +  +   +E     E  +  KS FLA+MSHELRTPLNA++
Sbjct: 166 IGYLLIGTDNTARKQEEAERKGFERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVI 225

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFSE ++   +G +++ T +EYIGDI  SGQHLL+LIN+ILDLS++EAG  EL   A+ L
Sbjct: 226 GFSEALKDGLVGEMSD-TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMELELEAVEL 284

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             ++   +++++ +A    I++  +    L  +  D +  +Q++ NLL+NAVKF+  G  
Sbjct: 285 AGLLANSLLIVREKAALHRIQLKLESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSS 344

Query: 389 VHVTVGWTSGRGQ-----------------------YISIKDNGPGIAEGEIPTVLTSFG 425
           V +TV                                +S+ D G GIAE ++  +  +F 
Sbjct: 345 VTLTVRQVPREQVGQIPGEWPVYNFALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFS 404

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           Q   ++    +G GLGL + + +   HGG   + S+   G   +A LP  R     
Sbjct: 405 QIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGCGARFVAWLPLHRAPEAA 460


>gi|153826223|ref|ZP_01978890.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|149739988|gb|EDM54163.1| sensor histidine kinase [Vibrio cholerae MZO-2]
          Length = 736

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++ 
Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +        ++++  ++ SG+H+++L+NEILD S+IE G++EL  SA  L  I+   
Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++     +       + D+  +RQ+I NLLSNAVKFT   G V + + 
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498

Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I ++D G GIA+  +  +   F Q          G GLGL I + I   
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
             G  L++S++ +G            +     ++ + T+ K Y
Sbjct: 559 MNGNVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599


>gi|302669543|ref|YP_003829503.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
 gi|302394016|gb|ADL32921.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
          Length = 1419

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 19/313 (6%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            + ++      + L  +    L    +    L    +K              +        
Sbjct: 764  RFLLVKKPRLVELFAVKLLILVVVAFAAGFLVWRILKA-----------TVVTKQYEEIT 812

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE---TYKEYIGD 293
            + ++ AE  N AKSRFLA+MSHE+RTP+N ILG  E+I  E    +      +   Y  D
Sbjct: 813  KAKEEAERANTAKSRFLANMSHEIRTPINTILGMDEMILREDARDVPKAYFLSIMNYSLD 872

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  + + LL LIN++LD+S+IE+G+  L E    + D +R  + M++ R+ EK +     
Sbjct: 873  IKNATESLLGLINDLLDMSKIESGKMHLVEQEYDVQDQLRSIVSMIRSRSTEKELIFEVV 932

Query: 354  IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409
            ID  L   ++ D   ++QV+LNLL+NAVK+TA G     V +            S+KD G
Sbjct: 933  IDEILPTRMYGDNGKIKQVVLNLLTNAVKYTAAGAVEFSVSMEARNDDICDLRFSVKDTG 992

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             G+ E ++  + T++ +      S  QG GLGL I++      GG+    S   EG E I
Sbjct: 993  IGVKEEDMDKLFTAYERLDEEKNSGIQGTGLGLDISRRFAELMGGKLWCESVYGEGSEFI 1052

Query: 470  AILPNTRVLNFIP 482
              L   R+++  P
Sbjct: 1053 LTL-QQRIVDDTP 1064


>gi|290960529|ref|YP_003491711.1| sensor kinase [Streptomyces scabiei 87.22]
 gi|260650055|emb|CBG73171.1| putative sensor kinase [Streptomyces scabiei 87.22]
          Length = 1391

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 14/309 (4%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            A     V  I +A     A S    +     +  +++     E     AEL  + +  +E
Sbjct: 871  AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAMQLQERSDELQAQQAELRRSNAELEE 930

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                    +  KS FLA+MSHELRTPLN++L  + ++     G L ++  + +   IHRS
Sbjct: 931  KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLTDQEVQ-FATTIHRS 989

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LL LIN+ILDLS+IEAGR ++    + LI ++       +    ++ +     +  +
Sbjct: 990  GSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAFEVAVGEN 1049

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----------RGQYISI 405
            +   +++DE+ ++Q++ NLLSNA+KFTA  GRV + V                     ++
Sbjct: 1050 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELAVNRVKDPDHRFTREHHDEVIAFAV 1108

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G GIA  ++P +  +F Q          G GLGL I++ I    GG+ +  S   +G
Sbjct: 1109 SDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIAESVPGKG 1168

Query: 466  VEVIAILPN 474
                  +P 
Sbjct: 1169 STFTLYVPV 1177


>gi|156973910|ref|YP_001444817.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156525504|gb|ABU70590.1| hypothetical protein VIBHAR_01620 [Vibrio harveyi ATCC BAA-1116]
          Length = 806

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   K                + E   LI +  
Sbjct: 274 RGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDITYDSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTVYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E+  +   +  I+     +      EK ++
Sbjct: 390 HLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSTNSVYHTLCAEKGLQ 449

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
                + P       D+  +RQV+ NLL+NAVKFT   G V V +       Q    IS+
Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GYVEVELTEYVEGQQTRLRISV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI+      +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISPDAQERIFRPFEQAESSTTRRYGGTGLGLAIVKQISEHMGGSITVQSQECIG 568

Query: 466 VEVIAIL 472
            + +  L
Sbjct: 569 TKFVVEL 575


>gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1240

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 7/327 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSN 211
           A+++  L   V      +   + +  + +     +S        +   + ++  +  K  
Sbjct: 466 AVTSAFLMIVVVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIRSGSDLSLRMSHKGR 525

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +I +  A  + ++ E+E            AE  N AKS FLA MSHE+RTP+N +LG +
Sbjct: 526 DEIAALIAGFNMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMT 585

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E+++   +        ++++  ++RSGQ LL +I++ILD S+IEAG+  L     +L  +
Sbjct: 586 ELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQL 641

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + + + +++  A+ K +E+  +   S+   +  D   +RQ++ NLL NA+KFT   G V 
Sbjct: 642 LDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFT-EHGHVA 700

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           ++  ++        I D+G GIA      +   F Q   +      G GLGL I++ +  
Sbjct: 701 LSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLAISRQLAE 760

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV 477
             GG   + S   +G       P    
Sbjct: 761 MMGGTLALDSTPGKGSVFTVTTPFEPA 787


>gi|167645228|ref|YP_001682891.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347658|gb|ABZ70393.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 687

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/447 (22%), Positives = 180/447 (40%), Gaps = 17/447 (3%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            +PI+    ++ A + T     P   + +   L        +        +   E     
Sbjct: 129 TAPIILAMAVVCATVLTLLHGLPFVTVLTDWFLCGALGMAIVLP--AVLVLLDSEHRRAF 186

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              L  QI + L    LT             +   A LL+A  +           V    
Sbjct: 187 QRPLPEQIGLFLLVATLTASVFYAKGLPAPFLLFPAVLLVAFRLGPRGAAQASLIVACVA 246

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P+ V             + S A        F   +      + + +   +  +  L+  
Sbjct: 247 IPLTV---QGLWTQQISTNWSQAQQNRLVQVFVGVLFVSSLATGLALAQQERLRRLLVRR 303

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            ++ ++            N AK+ FLA+MSHE+RTPLN++LGFS+++      P +    
Sbjct: 304 EQLTRAARARALAA----NEAKTEFLATMSHEIRTPLNSMLGFSQLLVERQDLPADA--- 356

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + ++  I  +G  LL ++N+ILD SR+EAG+ EL     S   ++ + + +++  AQ K 
Sbjct: 357 RRHLALIDSAGTALLTVVNDILDFSRVEAGQVELLFQPTSAAAVLHDAVGIIRPEAQNKG 416

Query: 348 IEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYI 403
           + +  ++   +  +   D   +RQV+LNLL+NAVKFT + GR+   +    G        
Sbjct: 417 LTLEVEVVDPVGGLHDLDGLRLRQVLLNLLNNAVKFTEV-GRIRARLTIEPGEIEDRLRF 475

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GIA  +   +   F Q   +   A  G GLGL I+++++   GG+  + + L 
Sbjct: 476 EIVDTGVGIAIEQQNRLFQRFSQVDSSASRAYGGAGLGLAISKALVELMGGKIGVDTALG 535

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      L   +V  + P +     +
Sbjct: 536 HGSVFWLELSAPQVEAYDPGEPQPVAE 562


>gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 773

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 2/237 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE  N AKS FLA+MSHELRTPLNAI+GFSE++E    GPL +E Y+EY  DI+ SG+
Sbjct: 530 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEYATDINSSGK 589

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +LL +IN+ILD+S+IEAG++ L    I L  ++ E + ++ L+A +K I +  +I  +L+
Sbjct: 590 YLLGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISVETRIADALT 649

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V AD + ++Q+++NLLSNAVKFT  GG + V    T      ++I+DNG GI +  +  
Sbjct: 650 LV-ADRRAIKQIVINLLSNAVKFTGHGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 707

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F Q       +  G GLGL I++S+    GG   IRS    G  V   +P  +
Sbjct: 708 LGRPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSSEGVGTIVSVRIPVKK 764


>gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 943

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 9/281 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            ++V  LS   E      +    +   +  R++AE  + AKS FLA+MSHE+RTPL+ I+
Sbjct: 405 DADVHRLSLLGEGVLAHVKERSRERDLERARRQAEAASRAKSDFLANMSHEIRTPLSGII 464

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +++    T+        +E +  I  S + LL ++N+ILD S+IEAG+ E S     L
Sbjct: 465 GLTQM----TLSQTPRPEVRENLEMILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDL 520

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
            + +   +   Q  +++K +++  +I   +  V   D   + QV+ NL+ NA+KFT   G
Sbjct: 521 REALDRTMKPFQFSSRQKGLKLSVRIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQ-G 579

Query: 388 RVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            V V               S++D G GI E  +P +   F Q   +      G GLGL I
Sbjct: 580 EVAVEFRLLRPGDPLLVECSVRDTGIGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAI 639

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           ++ ++   GG   + S+   G      +          ++ 
Sbjct: 640 SRRLVEMMGGTIGVESRSNHGSTFSFTVSLRPAREEQRDEA 680


>gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium]
          Length = 1329

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 13/265 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 826 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 884

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 885 MAPEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++   GG+  + S   +G      L
Sbjct: 945 LVTLMGGRMWVESDFGKGSVFYFTL 969


>gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 714

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +  ++     I +      ++          +  +L  + +     ++ A E + AKS F
Sbjct: 154 VMDSIQMLATIIFMSVAGALESFELYRNIRQMNNQLTQSNAELRTAKEAALEASRAKSEF 213

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTP+++I+   +++         +      +     S + L ++IN+ LDL+
Sbjct: 214 LANMSHELRTPISSIISGLKLLA----PMEEDPQKLSILNTCKDSAEALHSIINDSLDLA 269

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           +IEAG+ EL      L   + + +   + +A  K +++  ++DP L   V AD   + Q+
Sbjct: 270 KIEAGKIELIPENFDLHHELAKNLNTFRPQAGTKGLDLRLQMDPGLPRLVRADMHRLGQI 329

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + NLLSNAVKFT   G V +            G    ++D G GI +  +P +  ++ Q 
Sbjct: 330 LRNLLSNAVKFTRE-GWVELGAEVLIKNEKSCGVNFWVQDTGIGIPKDVLPRLFEAYAQA 388

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV----IAILPNTRVLNFIPE 483
             +      G GLGL I + ++   GG   + SK  EG          LP       + +
Sbjct: 389 DGSYSKKYGGTGLGLAITRYLVRLMGGSISVHSKEGEGSCFTLNITFELPPEGQAEEVQD 448

Query: 484 DNHES 488
            + E 
Sbjct: 449 PDAEE 453


>gi|1262208|gb|AAB03698.1| Nik-1 [Neurospora crassa]
          Length = 1298

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++  EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 792 LKTLAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850

Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   T        + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G +    
Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934


>gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1125

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 16/259 (6%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++        + E  +  +  I  SG+ 
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N++LD+S+IEAG+ EL     +L  ++ + + +++  A +  + +  +IDP L +
Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410
            V  D   +RQV+ NLL+NAVKFT   G V +T  +                  I D G 
Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I   ++   GG   + S+   G     
Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817

Query: 471 ILPNTRVLNFIPEDNHEST 489
            L   R     P     +T
Sbjct: 818 TLALPRA--TTPPAAQPAT 834


>gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
 gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
          Length = 1012

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 132/254 (51%), Gaps = 8/254 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           +       ++ AE+ N AKS FL+ +SHELRTPLN+ILG+++++  E       E     
Sbjct: 628 SNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQIL-EEQGEKDLTEKQLNR 686

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++G HLL LINE LDLS+IE+G   ++   +S+ + + + + +++  A++K+  +
Sbjct: 687 IRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSIL 746

Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           + +        +  DE   +Q++LNLL+NA+K++     + +    T      ISI+D G
Sbjct: 747 YTRFHAYQEVFIEVDELRFQQILLNLLTNAIKYSPAYRDITIYTDITQ-HHVTISIEDKG 805

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   E+  +   F + +   K    G G+GL + + ++    G   +RS+  +G    
Sbjct: 806 FGIPASELNRIFEPFYRVNRLEKD---GTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFW 862

Query: 470 AILPNTRVLNFIPE 483
              P   V   +P+
Sbjct: 863 VRFPI--VHPPVPK 874


>gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
 gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
          Length = 732

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 10/242 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            ++ +  AE     KS+FLA+MSHE+RTP+N ILGF ++++   + P      ++++  I
Sbjct: 353 LNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHLTP----EQEDFLHHI 408

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + S + LL +IN+ILDLS+IEA +  L     +L  I+++ + + +     K I+I    
Sbjct: 409 NSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFTA 468

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGP 410
           + +   V+ DE  ++Q+  NL+SNA+KFT   G+V +T+             ++++D G 
Sbjct: 469 NAAY-WVYCDEMRVKQIFTNLISNAIKFTLK-GKVTLTLKKITATDENTQFEVNVEDTGI 526

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA+  I  +   F Q          G GLGL I++ ++    G   + SK   G + + 
Sbjct: 527 GIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFLV 586

Query: 471 IL 472
            L
Sbjct: 587 RL 588


>gi|120554284|ref|YP_958635.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324133|gb|ABM18448.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 644

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 12/292 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + +   ++       + L +  +   ++S+  R++AE  + AKS FLA+MSHELRTP
Sbjct: 228 AREIAEIQQQLNELAVHLEQLRSARDQTLAISESAREKAEHASQAKSEFLATMSHELRTP 287

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG  ++I  E +         +Y+    +S + LL +I++ILD +R++ G   L +
Sbjct: 288 LNGVLGMVDLIHEEPLTK----RQSDYLTTARQSTEDLLTVISDILDYARMDNGNLVLDQ 343

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAV 380
            A  L  +   C+   +  A+++ + +  +     P   +V  D   +RQ++  L+ N++
Sbjct: 344 QAFDLQSLFTNCVASYRHAAEKQGLSLDLQFLGEWPRHPAVLGDAPRVRQILAGLIDNSL 403

Query: 381 KFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT+  G V + V W       +    S+KD+G GI    + +V  SF Q       A  
Sbjct: 404 KFTSE-GFVGIRVNWLELENHCVLVQCSVKDSGSGIPAERLQSVFNSFEQLDAGDNRAHG 462

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           G GLGL + Q ++   GG   + S + +G      LP        P D    
Sbjct: 463 GTGLGLSLVQRLVELMGGHVQVESDIGQGSSFRFELPFELAYQNPPTDEPRE 514


>gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 562

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 21/293 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQA-------EKDDLIAELEVAKSLSDETRKRAEEEN 246
             A+  +    +   +  + +L   A       E   L AEL+   +  +  +  A    
Sbjct: 127 TAAIGAYWARRHRPSRRELSVLQALADATSVAMENVRLYAELQERIAELESQKALAVAAT 186

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA+MSHE+RTPLNAILG +E+ E         +  KE+   I +SG+ LL++IN
Sbjct: 187 RAKSEFLANMSHEIRTPLNAILGMAELAERRC-----PQHVKEHFKLIRQSGRALLDIIN 241

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILDLSRIEAGR+          + +   +  + + A+EK + +   + P++   +  DE
Sbjct: 242 DILDLSRIEAGRFAPQRKPFQPREALDSVLGPMSMIAEEKGLALNLAVSPTVPVWLVGDE 301

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-------ISIKDNGPGIAEGEIP 418
             +RQV+ NLL NA+KFT   GR+ + V       Q+        S++D G GI      
Sbjct: 302 GRLRQVLTNLLGNALKFTER-GRIELHVAREPSDLQHPEAVRLHFSVRDTGIGIPAERQQ 360

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +  SF Q   +  +   G GLGL I++ ++   GG+  + S+   G      
Sbjct: 361 AIFQSFSQAEASAHAKYGGTGLGLTISKELVERMGGRIWVDSEPGLGSTFHFT 413


>gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 847

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 165/305 (54%), Gaps = 2/305 (0%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVA 231
            LS   +    V  +++ G   T       + + + +S  + +  + E     IAE   A
Sbjct: 531 ILSLVFVPLPGVGVVNVYGSDITGRIAAERLLHMVNESLERRVHQRTEALKAEIAEHIRA 590

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      +++A+  N AK+ FLA++SHELRTPLNA++GFSEV+  E  GPL +  Y  Y+
Sbjct: 591 ERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMAAEMFGPLGSARYVGYV 650

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            DI  SG+HLL +IN+ILD+++IEAG+ E     +   ++V   I +++ RA    + + 
Sbjct: 651 NDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVVAAAIRIVESRADAGGLVLG 710

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             I   + ++ AD + + Q+++NLLSN+VKFT  GG V VTV    G     ++ D G G
Sbjct: 711 SHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEVTVEVL-GDMVGFTVSDTGIG 769

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +++ E+   +  F Q   ++     G GLGLP+ ++ +  HGG   I S+  EG +V   
Sbjct: 770 MSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHGGHLDIVSRKGEGTQVTVR 829

Query: 472 LPNTR 476
           LP   
Sbjct: 830 LPQEP 834


>gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 17/348 (4%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                 P    +   A L ++ S+  +SN +    +FL+    V +L    I        
Sbjct: 129 VLHVSVPVKNKLNYVAILRLSSSLEEVSNIIKRLVLFLALVLTVSSLVALII------GF 182

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +A  L   L      T  + K N K+ + +   D++    +    +++E   + EE   
Sbjct: 183 FIANELTKPLEMVKKATQEMAKGNFKVRAEKTSNDEIGILADSFNKMAEE-LGQLEE--- 238

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K+ F++++SHEL+TPL +I GF+            N    EY+  I      L  L++E
Sbjct: 239 MKNEFISNISHELKTPLTSIKGFAITAMDLV---EKNSELYEYLNIIDEETDRLSRLVDE 295

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LD S+IE  + +LS   + L  ++ + + +L+  A    + +  K       +  D   
Sbjct: 296 LLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNLICKKKIDRVVINGDVNR 355

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV++N++ N +K  + G  V V +     +   I I+D G GI + EI  +   F +G
Sbjct: 356 LKQVLVNIIDNGIKACSRGKYVKVFLDI-KDKKAVIRIEDQGQGIPQEEIKYIFDKFYRG 414

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                +   G GLGL I++ I+  H G   + S++ +G      LP  
Sbjct: 415 KN---NKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLK 459


>gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1142

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 130/265 (49%), Gaps = 10/265 (3%)

Query: 224 LIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+    +A    +  R  AE    N AK  FLA MSHELRTPL A+LG+++++      P
Sbjct: 737 LVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDP 796

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E     +  I R+ + L  LI ++LD+SRI  G+  L + A+ L  +V+  + +++ 
Sbjct: 797 AIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRP 853

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           RA++K + +  +       V  D   ++QV  NLL NAVKFT  GGRV V V        
Sbjct: 854 RAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEW 912

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + IKD+G GI    +P +   F Q   +      G+GLGL I + ++  HGG+    S 
Sbjct: 913 RVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESA 972

Query: 462 -LREGVEVIAILPNTRVLNFIPEDN 485
            L  G      LP   V   +PE  
Sbjct: 973 GLGHGSTFTVRLP---VPALLPEPE 994


>gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 724

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 150/345 (43%), Gaps = 23/345 (6%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V +        L    + +   +     G+L  +       T +   S +   +   E  
Sbjct: 119 VVVPTLTGTDTLVLHVLATNSRIRGMFVGILPGSHLSAEVSTLNALSSILINTAYAVENS 178

Query: 223 DLIAELE-----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +L   L+              +  +E   +AE    AKS FLA+MSHE+RTP+N ++G +
Sbjct: 179 ELYDMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLA 238

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +    ++  + Y+  +    ++LL +INEILD+S++EAG   L      L   
Sbjct: 239 KLLMETPL----DKVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRF 294

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +   +    LR QEK + +  +  P L   V  D   +RQ++ NLL NA+KFT   G + 
Sbjct: 295 LDRSLQPFVLRGQEKGVRVRLEAYPGLPELVLGDPVRLRQILGNLLGNALKFTQK-GSIT 353

Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +T   T       G   S+ D G GIA   I  +   F Q   +      G GLGL I++
Sbjct: 354 LTAALTGSGENGVGLKFSVADTGIGIAPEAIEVIFEKFSQADSSTTRLYGGTGLGLSISK 413

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNHEST 489
           S++   GG+  ++S L +G      +  +  +      E+  E+ 
Sbjct: 414 SLVELMGGELSVQSALGKGSVFSFCIELSQPKAGERPAEEEGEAP 458


>gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1186

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 26/312 (8%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                        I++  ++   L       Y                      +     L
Sbjct: 751  IVNPPWWRSRFGIAVMVLVGMMLGVLLAAAYRRR-----------------VRMRAQWQL 793

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +   R+ AE+ + AK+RFLA++ HE+RTP+  +LG SE++    +    +   + Y   I
Sbjct: 794  AQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGRQQGYASAI 849

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              +G+HLL L+N+ LDL+RIEAG+  L +    L  ++R+ + +++  A++K +     +
Sbjct: 850  QSAGKHLLRLVNDALDLARIEAGKLALDDRDFDLRQLIRQVVDLVRPSAEQKQLAFECHL 909

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQYISIKDNGPG 411
            D SL   +  D   ++Q++LNLL NAVKFT   G+V + V      G G  + + D GPG
Sbjct: 910  DESLPRALHGDANRVQQILLNLLFNAVKFTER-GQVRLRVLPLQAGGGGIRVEVSDTGPG 968

Query: 412  IAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            ++E +   +   F Q       +   G GLGL I + + A  GG   + S L +G   + 
Sbjct: 969  MSEEQRGRLFQRFEQAEGGRTTTRHGGSGLGLAICRELAAAMGGSVGVSSALGQGACFVV 1028

Query: 471  ILPNTRVLNFIP 482
             LP   V    P
Sbjct: 1029 ELPLRWVSTPAP 1040


>gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 740

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 124/248 (50%), Gaps = 6/248 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +L+   +  D  RKRAEE    KS FLA+MSHE+RTP+N I+  SE++E  T+    N  
Sbjct: 199 QLKKTAAGLDHARKRAEEAERIKSAFLANMSHEIRTPMNGIIAMSELLEQGTL----NPE 254

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +     I  S   LL +IN+ILD S+IEAG+  +       I++V E   +    A  K
Sbjct: 255 QRSMTSTISSSAVALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAK 314

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            +EI  +    +   V  D   +RQ +LN++ NAVKFTA  G VH+ +  +      + +
Sbjct: 315 GVEICVESVLEMPLMVMGDSARLRQCLLNVIGNAVKFTAT-GNVHIWLNRSEDGQIVVKV 373

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GIAE ++  +   F Q          G GLGL I+  ++   GG    RS+  EG
Sbjct: 374 TDTGVGIAEDKLDHIFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEG 433

Query: 466 VEVIAILP 473
                 LP
Sbjct: 434 SVFEMRLP 441


>gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61]
          Length = 470

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 7/242 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K+AE  +  KS  ++++SHELRTPL  ILG +E++  +   PL  E  ++Y+  I +  +
Sbjct: 235 KQAE-VDRMKSELVSTVSHELRTPLAGILGLAELLLNK---PLAPERQRKYLTAIGQEAE 290

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L+ LIN+ LD+ R+EAGR       + L+ I+ + I     +           ++   +
Sbjct: 291 RLMALINDFLDVQRMEAGRQTYRWEPVDLVPIMEKIID--AEKMGTDIHTFSVSVETKRT 348

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D + +RQ+  NL+ NAVK++  GG V + + +       + ++D G GI    +P 
Sbjct: 349 MIRGDRERLRQLFTNLVHNAVKYSPNGGAVVIRL-YEHSGCLCVDVQDEGLGIPAEALPH 407

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   + +    G GLGL I + I   HGG+  + S+ ++G       P   +  
Sbjct: 408 IFEKFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFPLAPLPQ 467

Query: 480 FI 481
            +
Sbjct: 468 EV 469


>gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI]
 gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 487

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 142/332 (42%), Gaps = 8/332 (2%)

Query: 149 LSISALSNFMLPYA--VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           ++ + + +  L       L    + +      I+   +L +  +  L+  L     I   
Sbjct: 158 VTGAVMLSAPLAPIEGRILDLQKITLYTGIAGIILATILSLFFSRTLSRPLLNMNMIARA 217

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTP 263
           +   +         KD++    E   SLS   + +    E  +  +  F+A++SHELRTP
Sbjct: 218 MAGGDYSRQVEVKSKDEIGILAESLNSLSLRLQDKVAALERLDQTRREFVANVSHELRTP 277

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ +LG++E +        ++   ++Y+ +IH     L  L+ E+LDLSR+EAG+     
Sbjct: 278 LSIMLGYTEALIDGL--AHSDTDRQKYLNNIHEEILRLRRLVTELLDLSRMEAGQVNAEM 335

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               +  +        Q  A +K +E+   +   L  V A+   + QV +NLL NA++ T
Sbjct: 336 HETDVAAVAGRVFDKFQAVAAKKGVELRNSLPSVLHPVLANPDRLEQVFINLLDNAIRVT 395

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V +T          +SI D G GI   E P V   F +   +     +G GLGL 
Sbjct: 396 PAGGVVEMTAYELK-NELRVSISDEGHGIPPEEQPLVWERFYKVDKSRTRTGEGTGLGLA 454

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I + I+  HGG   I S   +G      +P  
Sbjct: 455 IVKKIVEAHGGSVEIASMPEKGSTFSFTIPKK 486


>gi|149370174|ref|ZP_01890025.1| Signal transduction histidine kinase-like protein [unidentified
           eubacterium SCB49]
 gi|149356665|gb|EDM45221.1| Signal transduction histidine kinase-like protein [unidentified
           eubacterium SCB49]
          Length = 728

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 159/319 (49%), Gaps = 21/319 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             I   G+  T +   + +T  L+K N   L  +A    +        S     +++AE+
Sbjct: 297 FIIYTTGLGVTLIVILSLLTLSLYKINN--LKAKANNLLI-----QKNSELQAAKEKAEK 349

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            ++AK++FL+++SHELRTPL A+ G + ++  E          KE++  +  SG++LL+L
Sbjct: 350 ASVAKAQFLSTVSHELRTPLYAVTGLTHLLLDE----NPEPKQKEHLDSLKFSGEYLLSL 405

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           IN +LDL+++EA + E+     +L   +R+ I  L+  AQ+KN ++    D  L   +  
Sbjct: 406 INNLLDLNKLEAKKTEVEYLTFNLEKQIRDVIDALKNSAQDKNNKVTLDFDNELPDKIVG 465

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
           D   + Q+++NL+ N++KFT   G V + V   +           I+DNG GI++ +  T
Sbjct: 466 DPIKLSQILMNLIGNSLKFT-QNGFVTIRVKKNNEDDKNINIKFEIEDNGIGISKKKRST 524

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---- 475
           +  SF QGS+ +     G GLGL I ++I+        + S L +G +    +       
Sbjct: 525 IFESFSQGSLQVNRKYGGTGLGLSIVKNILKLMNSDIHLESTLGQGSKFWFNITFKKHID 584

Query: 476 RVLNFIPEDNHESTQYKCY 494
           R +  I +  +E+  +  +
Sbjct: 585 RNVKPISQSTNEAIDFSVF 603


>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
 gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
          Length = 935

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 18/310 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----AELEVA 231
             A      + I+  G L         +   L  S +++     + +D +      LEV 
Sbjct: 212 LNADTLGQHMVINSTGELRLLQRDIANVVKRLHFSFLELREHTEQTEDDLRRTLDTLEVQ 271

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R +A   N AKS FLA++SHELRTPLN+I GF  ++  +  G L+NE    Y+
Sbjct: 272 NITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQ--GNLSNE-QSLYL 328

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I +S  HLL LIN++LD S+I+AG+ EL  +   L + + + + ML   A +K+I++ 
Sbjct: 329 QTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMA 388

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
                 +   +  D    +Q++ NL+SNA+KFT   G + V              + S++
Sbjct: 389 FYYADGVPKHIIGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEHDGMDQCVLHFSVQ 447

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL---- 462
           D+G G++  +   +  SF QG  ++     G GLGL I++ +++   GQ           
Sbjct: 448 DSGIGLSGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAP 507

Query: 463 -REGVEVIAI 471
             +G      
Sbjct: 508 TEKGSTFWFT 517


>gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 876

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 144/358 (40%), Gaps = 34/358 (9%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L              P + A     I + H               F         K+   
Sbjct: 264 LLGREWRTFHGAEARPEIFADMVTTIRAGHPWTGEWMMPRKDGTVFPLRAAITPVKNRAG 323

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +       + + E+   ++L  E ++RAE  + AK +FLA+MSHE+RTPLN I+GF+ +
Sbjct: 324 EIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEVRTPLNGIVGFASL 383

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    + P       EY+  I  S + L+ L  +ILD +RIE+GR +L        + V 
Sbjct: 384 LLETELTP----EQLEYVETIRTSSETLIQLTGDILDYARIESGRLKLEPQPCDPRECVE 439

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             + +    A  K +E+   ID ++ + + AD   +RQVI+NL++NAVKFT   G V V 
Sbjct: 440 NALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAVKFTPT-GEVAVD 498

Query: 393 VGWTSGR-------------------------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V   +                               S++D G GIA    P +   F Q 
Sbjct: 499 VRVVASSPAPETADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAHHPKIFRPFSQV 558

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             +      G GLGL I ++++    G     S+L  G      +   RV    P  +
Sbjct: 559 DDSTTRRYGGTGLGLAICKNLVGLMNGHITFTSELGRGSRFTFTI---RVPVHTPAAD 613


>gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
 gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
          Length = 389

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 136/260 (52%), Gaps = 7/260 (2%)

Query: 217 CQAEKDDLIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +  +    AE E AK L  E   R  AE  N  K  FL+++SHELRTPLNAILG+S ++
Sbjct: 133 AKEIRLRQRAEEERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGIL 192

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + + +   +    +  +  I R+ +   +LI ++LD+S+I  GR  L   AI L+ ++  
Sbjct: 193 QSKNL---DEAEIRRALEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEA 249

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            I  L+  A  KNI +   +DP+ S V  D + ++Q++ NLLSNAVKFT   G V + + 
Sbjct: 250 AIDTLKPAADAKNIRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQ 309

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +     I + D G GI+   +P V   F Q + ++  +  G+GLGL I + ++  HGG
Sbjct: 310 QINSH-VEIVVADTGQGISAEFLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHGG 368

Query: 455 QFLIRSK-LREGVEVIAILP 473
                S    +G      LP
Sbjct: 369 TVQAESPGEGQGATFTVKLP 388


>gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
 gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
          Length = 2370

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 6/312 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
             ++ +P +     Q  +   +    +    A       +     F    +       +  
Sbjct: 1912 RIARYPHLAEAYAQYDIDAWISIPLMVEGSAVGGITLGFAQLQEFSEEDRAFMLAVAQQC 1971

Query: 224  LIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              A        ++   R  AE  N  K  FLA +SHELRTPLN ILG+++++    +   
Sbjct: 1972 AQAIARAHLYEAELTARNAAESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQA 2031

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             ++     +  I R+ +    LI ++LD+SRI  G+  L+   I+L+ ++   I  ++L 
Sbjct: 2032 TSD---RALETIERNAKLQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLS 2088

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            AQ K+IEI    +  + SV  D   ++QVI N+LSNA+KFT   G+V + +     +   
Sbjct: 2089 AQAKSIEIQTIFEFGVGSVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQVGSQ-VQ 2147

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461
            I + D G GIA   +P V   F Q   A      G+GLGL I + ++  HGG     S  
Sbjct: 2148 ICVTDTGKGIAPEFLPYVFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGGTVQAESLG 2207

Query: 462  LREGVEVIAILP 473
              +G      LP
Sbjct: 2208 EEQGATFTVRLP 2219


>gi|218531622|ref|YP_002422438.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218523925|gb|ACK84510.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 1071

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184
           +E          +       I   +      ML     +    V+V    +         
Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 536

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237
           L  +L  +    +     + +    +       Q E        +  IA  ++  +   +
Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKITDAKLQQ 596

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ AE  NLAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS
Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHL  LI+ +LD+SR+EAGR +   + I L D + + + M++L+A+   +         
Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713

Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L +V A DEK +RQ++LNLLSNA+KFT   G V + + +  G+    +I+D G GI E +
Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +GS+    A  G GLGL IA  +    GG+  + S++ EG      L    
Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831

Query: 477 V 477
           V
Sbjct: 832 V 832


>gi|302528985|ref|ZP_07281327.1| two-component system sensor kinase [Streptomyces sp. AA4]
 gi|302437880|gb|EFL09696.1| two-component system sensor kinase [Streptomyces sp. AA4]
          Length = 1586

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 104/423 (24%), Positives = 176/423 (41%), Gaps = 28/423 (6%)

Query: 78   ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
               A   A    G +    +  IG+  V R  +LV             L          L
Sbjct: 986  CIAAYGLAQARTGLRFRLGESLIGQAAVDRRTILVNGAPPEYALVSSGLGSAPPVNVIVL 1045

Query: 138  TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             +     +L  L +++++ F   +   L      + ++   I+S    +  L      A 
Sbjct: 1046 PVLFQGEVLGVLELASVNEFSAVHLDLLEQLRHTIGVNVNTILSNSRTEALLTESQRLAQ 1105

Query: 198  SFFTY------ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------- 244
                           L +SN ++    A       ++EV     ++ R+  EE       
Sbjct: 1106 ELRARSEQLQAQQGELRRSNTELAEKAALLAQQNRDIEVKNIEIEQARQELEERAGQLTV 1165

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             +  K+ F+A+MSHELRTPLN+ L  ++++     G L  E   ++   I+ +G  L  L
Sbjct: 1166 ASQYKNEFMANMSHELRTPLNSALILAKLLSENPEGNLT-EKQIQFAKTIYAAGSDLQQL 1224

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
            IN+ILDL+++EAG+ +L  S ++L ++V     + +    +K +E    IDP +  SV  
Sbjct: 1225 INDILDLAKVEAGKLDLQMSDVTLPELVNYVESLCRPLTADKGLEFAVLIDPPVPGSVHT 1284

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------------WTSGRGQYISIKDNGPG 411
            DE  ++QV+ NLLSNA KFT  GG V + +              ++      +++D G G
Sbjct: 1285 DEHRLQQVLRNLLSNAAKFTDEGG-VRLHIRMADPEEVEQESLRSAAGIIAFAVEDTGIG 1343

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I E ++  +  +F Q          G GLGL I+Q +     G+  + S   +G      
Sbjct: 1344 IPEEKLEVIFDAFRQADGTTSRKYGGTGLGLSISQQLTELLSGELRVSSVPGKGSTFTLY 1403

Query: 472  LPN 474
            LP 
Sbjct: 1404 LPV 1406


>gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 609

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  + +F+A++SHELRTPL  +  + E +        + E    +I  +    + ++
Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKEITPRFIQVVQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ I+      + I   +L  +  NI   + I      + 
Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELT-KSDNIRFVRNIPREAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG +   V   +     ISI D G GI + ++  +  
Sbjct: 488 VDEDKITQVLDNIISNAIKYSPQGGTITFRVRELAD-EIIISISDEGVGIPKADLAKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLPLER 600


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 20/323 (6%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            +VV L  +  +   +L    +G           ++    +  + +         L+    
Sbjct: 775  MVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMELLSQLANQIGIALTQA-----ALLERER 829

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  ++ RK AE+   AKS FLA+MSHE+RTP+NA+LG + ++    +    N   ++
Sbjct: 830  KRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPL----NAEQRD 885

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            ++  I  SG  LL LIN+ILD S++E G  EL      L   + E   +    A  K +E
Sbjct: 886  FVETIRVSGDALLTLINDILDFSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLE 945

Query: 350  IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404
            +   + P +   +  D   +RQ++ NL+SNA+KFT   G V +               +S
Sbjct: 946  LAVLVPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQ-GEVVIQAELMQETATHVQLRLS 1004

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            ++D G GI +     +   F Q   +      G GLGL I + +    GG+  + S+   
Sbjct: 1005 VRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEEGR 1064

Query: 465  GVEVIAIL-----PNTRVLNFIP 482
            G      L     P  R ++  P
Sbjct: 1065 GSTFSLELTLERQPYARQISQQP 1087


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 171/448 (38%), Gaps = 41/448 (9%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL----------AVYAANLSLGKKVM 94
             +   +L L    +A +    T      +W +  L                     + +
Sbjct: 239 RKKEKALLYLGCFCIAALFYILTHGEKLLVWGIPDLPYEWILKIQSFSSTLFYYFLIRYV 298

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY------KSATLLIA 148
           +   +I    +      +    + L   L       +    ++ ++          +LI 
Sbjct: 299 HLSTQIVMNRIVLRLYHITTALM-LGMGLFLPTLILSSFEAFILLFGVVSVGYVLLILIR 357

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
             +    +  L     +S   +VV      +    V  ++   ML   L+    +     
Sbjct: 358 GLLQRTDDAALLVISIMSILMIVVTSFVYILGWGDVRGVTAYEMLIFVLAQTLLLAKRFV 417

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            S +++ +                       +R    +  K  FLA+ SHELRTPL+ I+
Sbjct: 418 HSFMEVENLS---------------------RRLLTLDGLKDEFLANTSHELRTPLHGII 456

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             ++ +     G   NE  K  +  I   G+ L  LIN+ILD S ++ GR  L+    ++
Sbjct: 457 NIAQSMLDR-YGTQFNEPQKHNLVLIANVGRRLSYLINDILDFSNLKNGRLALNRRPANV 515

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              V   + +L     +K +   ++   SL  V ADE  + Q++ NLL NAVKFT   G 
Sbjct: 516 QAAVNSVLEVLGHTVGKKKLHFVKEWPHSLPKVDADEDRLIQILYNLLGNAVKFTEE-GE 574

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + ++      R   IS+KD G GIA+  +P +   F +G+ A      G GLGL I + +
Sbjct: 575 IVISAKA-GTREMEISVKDTGSGIAQEHLPHIFEPFNRGANAEDEGYSGTGLGLGIVRRL 633

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  HGG   + S+L +G      +P  +
Sbjct: 634 VELHGGHIRVESRLGKGSTFYFTMPLAQ 661



 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 161  YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
              +     P +  +     +        L  +L TA      I           L    +
Sbjct: 752  LVITDWMMPEMSGIELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVD 811

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLA---------KSRFLASMSHELRTPLNAILGFS 271
             ++L A +    ++    R  AEE   +         K  FL +        LN I+   
Sbjct: 812  AEELKARVRTLLNM----RHSAEEAVRSEMAFLQAQIKPHFLYNA-------LNVIVSTV 860

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA--ISLI 329
                      ++ +   E                  +++LS+   G ++       + L 
Sbjct: 861  ---------AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENTVPLS 894

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT----AI 385
              +      + L        +   I+   +          Q I   + NA++      A 
Sbjct: 895  KELELVESYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQPI---VENAIRHGVMQRAT 951

Query: 386  GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL-PI 444
            GG V V V    G    +S+ D+G GI    +  +L         + S+      GL  I
Sbjct: 952  GGTVRVVV-QEDGTDFVVSVTDDGVGIPAERLEQLL-----SEDHVSSSV-----GLRNI 1000

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILP 473
             + ++  +G    I S   +G  V   +P
Sbjct: 1001 HRRLIHMYGEGLRIESNSMQGTTVSFRVP 1029


>gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 745

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 164/414 (39%), Gaps = 18/414 (4%)

Query: 71  IFPMWSLITLAVY--AANLSLGKKVMNSDIKIGEVYV-WRIWLLV--GQIAIGLCWTLLT 125
               W ++   +        L + ++        +   +          +     W+   
Sbjct: 42  FITSWGIVACCIGWMLLAYYLNEPLIALLTGPALLGTIFATIFTAYGMPLLGRTVWSAGG 101

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           +V     +           + + L       F +          VV A +   +  + + 
Sbjct: 102 IVAVTLASFTIHEAANPELMYLVLLGGPFLTFAVGRENLQLTI-VVAATAISLMAVLLLG 160

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
           +           +   Y+   L      +++ +     ++A     K   + +  +A   
Sbjct: 161 NDFFGAPWVGKETAEKYLATGLLFMVFILIAVEMAAFGILAHTNQVK--MEASSTQARLA 218

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AK+ FLA+MSHE+RTP+N ++G  E++E   +           +  I  S   LL++I
Sbjct: 219 SRAKTDFLAAMSHEIRTPMNGVVGMVEILENSKLTT----EQSRIVETIRDSSTALLSII 274

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
             ILD+SRIEAG+ EL      ++ +  +    L+  A+  ++ +    DP L      D
Sbjct: 275 ENILDMSRIEAGKLELKLQKTEVLSVFEKSADTLRHFAEAHHVTLLMNYDPDLPKYMSCD 334

Query: 365 EKGMRQVILNLLSNAVKFT-----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
              +RQ+ILNLLSNA+KF+        G+V +TVG++      + + D+G GI E  + +
Sbjct: 335 SGRLRQIILNLLSNAIKFSKRPPEDPKGQVILTVGFSDKDDLKVEVSDDGIGIGEEFLSS 394

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F Q +   +    G GLGL I   ++    G   ++S+  +G      LP
Sbjct: 395 LFDPFEQSAEVRRHEFGGSGLGLAIVSQLIEKLNGSIGVQSQRGQGTTFTVHLP 448


>gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii
           37]
          Length = 1278

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 15/273 (5%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE  +    +E AK   +      E+ +  KS FLA+MSHELRTPLN++L  S+ +   +
Sbjct: 542 AEMTEKNTVIERAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNS 601

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L NE  +E    I+  GQ LL LIN+ILDLS++EAG+ ++     S+ +++      
Sbjct: 602 QGNL-NEEQQEDARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQ 660

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---- 393
            +  A +K +E+    +  LS   ++D + + QV+ NLLSN +KFT   G V + V    
Sbjct: 661 FKPVANKKGVELCFDKEDVLSDDFFSDPQRIEQVLRNLLSNGIKFTHH-GTVSLKVIQPG 719

Query: 394 --------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                             ++ D G GI+     +V  +F QG  +      G GLGL I+
Sbjct: 720 PSVRFDNPALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTIS 779

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           + ++   GG+  ++SK  EG      LP  R L
Sbjct: 780 RELVKLMGGEIQLQSKEGEGSTFTLYLPLDRRL 812


>gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
 gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
          Length = 1319

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 18/255 (7%)

Query: 242  AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIEL-------------ETMGPLNNETY 287
            AE E    K+ FLA++SHELRTPL ++LGF+ +I               +       +  
Sbjct: 1068 AEREIEQIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIFPWVAIGDQPTQKAIQQV 1127

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +  +  I    + L +LIN++LD+++IE+G+ E +  ++S I I+   II      ++KN
Sbjct: 1128 RNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIILERAIISTSSLFEDKN 1187

Query: 348  IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIK 406
            + + +   P L  +  D+  + QV++NLLSNAVKFT +G    VT      +    I+I 
Sbjct: 1188 LRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS---VTCQAQQNQEYLVIAIT 1244

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   E   V   F Q    + +  QG GLGL I + I+ +HGGQ  + S+L +G 
Sbjct: 1245 DTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHHGGQIWVESQLGQGS 1304

Query: 467  EVIAILPNTRVLNFI 481
                 LP    L   
Sbjct: 1305 TFFFTLPLAVSLPPS 1319


>gi|193215941|ref|YP_001997140.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089418|gb|ACF14693.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 500

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 20/358 (5%)

Query: 131 TWTPEYLTIYKSATLLIALSIS--ALSNFMLPYAVFLSFFP------VVVALSTQAIMSM 182
               E    Y   TL    + S  A+        + +          +++ L+  A+++ 
Sbjct: 146 KTGDETPLAYLYVTLGCVSAASTEAMIAHSYALRILVVSLVVALLAAMLIGLAMIALLTK 205

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +              F   I          + +   E    I         +++  +  
Sbjct: 206 DLWRFVTFIQKIQGGDFSKRIHVSSSSELKALANAFNEMAAKIEHTMNLLKENEKLLR-- 263

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                    F+A++SH+LRTPL +I G+ E I L+    L+ +  ++Y   I ++ + L 
Sbjct: 264 --------EFIANISHDLRTPLASIEGYMETIILKK-HLLSEKEKQQYFNTILKNTRTLN 314

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++LDLS++EA + +L     S+ +++++ ++    +A   NI +          V+
Sbjct: 315 RLVNQLLDLSKLEARQVKLKPEPFSITELIQDVMLKFNPQATASNISLNAHFPSHTPFVF 374

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD   + +V+ NL+ NA   T   G + V +        Y+ ++D G GIA  ++  +  
Sbjct: 375 ADLGLIDRVLQNLIGNAFNHTEENGCIDVEIEMLDEYTMYVRVQDTGKGIAPEDLKHIFD 434

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLN 479
            F QG       + G GLGL IA+ IM  H     + S L  G      LP   RV  
Sbjct: 435 RFYQGDKVRSKHKSGAGLGLTIAKKIMELHHSTLDVESTLGVGTTFSFKLPVYVRVAE 492


>gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 766

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 13/278 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +LI E +  +    + ++ AE+  L KSRFL+ MSHE+RTP+N ++GF+ ++        
Sbjct: 369 ELITEKKQIQEALIKAKEDAEQAALIKSRFLSIMSHEIRTPMNGVIGFTNLLLKN----- 423

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +E +  +  S Q+L+ +IN++L+L++I+AG+ EL   +  L ++++      +  
Sbjct: 424 PREDQREALNVLKFSAQNLMVIINDVLNLNKIDAGKVELENISFDLYELLQNICRSQEND 483

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A+EK++ +  + D SL      D   + QVI NL++NA+KFTA  GRV ++         
Sbjct: 484 AKEKHLNLSVQFDYSLPFWFKGDPVRIGQVITNLVNNAIKFTAA-GRVSISTALVGEHEG 542

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++ D G GI E +   +   F Q          G GLGL I + ++   G    
Sbjct: 543 KMTIGFAVSDTGIGIPETKQEHIFELFSQAESDTTRIYGGTGLGLTITKRLLELMGSNIQ 602

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           ++S   EG      L   +  + +P +         +A
Sbjct: 603 LKSTPGEGSIFYFDLELEK--STLPVEETSGLDTPRHA 638


>gi|295690250|ref|YP_003593943.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432153|gb|ADG11325.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 622

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 109/482 (22%), Positives = 193/482 (40%), Gaps = 29/482 (6%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN---PIFPMWSLIT 79
           + L        D  +    V    R S          A   T  TQ    PI+ +W   T
Sbjct: 1   MTLARGRPSIRDNPLTMALVRQASRNSVATMGVQAAAAIGVTLATQPAERPIYWVWLAAT 60

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLVGQIAIGLCWTLLTLV-EPGTWTPE 135
           LAV AA + + + +  +              +    G +     W +L  +  P      
Sbjct: 61  LAVLAARVVVDRMLAAALKGGPFARRLDQIVVAFSAGLLISAALWAVLAWLRFPLDSQHT 120

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              I    + L   +   LS   L   +++S   +  +++        +  + +A  L  
Sbjct: 121 RFVIIVVLSALAGGATGVLSPLKLTGRIYISLILLPASVALLLGPDRALGLLGVAFWLVM 180

Query: 196 ALS-----FFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRA 242
                        +  L   N  ++   A +         DL A + +      +  +RA
Sbjct: 181 LTGHRNNHALLVDSIQLRDQNRDLVEALARRSRDLNSLNQDLEARVALRTRQLQDATERA 240

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  N AKSRFLA++SHE+RTPLNAILG  +++    +    N+  +E + ++  + + L 
Sbjct: 241 QSANEAKSRFLATVSHEMRTPLNAILGLGQILARSAL----NKKQREQVLEMKGAARRLR 296

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +I+++LDL +++ G  EL      L  + +    + +  A+ + + +  +++P L    
Sbjct: 297 MMIDDVLDLCQLDDGELELKPRPFHLTALAQSLDNLHRPTAEVRGLRLTMQLEPGLGEAR 356

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTV 420
             D   +RQVI  L+ NA+KFT  GG   V      +G    I + D G G+A  ++  +
Sbjct: 357 LGDVDRLRQVISVLIDNALKFTQEGG---VDCRIHGAGDDLRIEVSDTGDGVAAEKMAVI 413

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   + K A  G+GLGL + Q ++A  GG     S+  +G      +P   +   
Sbjct: 414 FEHFSQIDDSTKRAAGGIGLGLALCQGLVAKMGGDMSASSQPGQGSTFTLRIPCPAIAEA 473

Query: 481 IP 482
            P
Sbjct: 474 PP 475


>gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
 gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
          Length = 1175

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 141/304 (46%), Gaps = 26/304 (8%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                     + LA +     S+F ++     +                     A  L+  
Sbjct: 757  PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 798

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++ AE+ + AK+RFLA++ HE+RTP+  +LG SE++    + P      + Y   I  +
Sbjct: 799  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 854

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356
            G+HLL+L+N+ LDL+RIE+GR EL     +L  ++++   ++   A +K +        P
Sbjct: 855  GEHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTLDNQLP 914

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415
                   D   +RQ++LNLLSNAVKFT+  G + +        R  +  ++D GPGI++ 
Sbjct: 915  PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 973

Query: 416  EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q   A  +A   G GLGL I + +     G+  + S+L  G      LP 
Sbjct: 974  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1033

Query: 475  TRVL 478
              V+
Sbjct: 1034 PLVV 1037


>gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 583

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      ++ R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 189 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 244

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 245 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 304

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 305 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 361

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 362 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 417

Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
           S+  +G    A+LP     ++  P  +  + +
Sbjct: 418 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 449


>gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 842

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +     + +    E      +L    +     ++ AE+ + AK+ FLA+MSHE+RTP+N 
Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S+++    +    +   ++ +  I  S   LL +IN+ILDLSR+EAG+ E+S    
Sbjct: 480 IIGMSDILAESPL----SAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           +L   V   + +L+ + +EK +   Q     L   V  D+  +RQ+++NLLSNAVKFT  
Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFT-Q 594

Query: 386 GGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            G V + V          +I + D G GI+E +   V   F Q   A      G GLGL 
Sbjct: 595 YGSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLT 654

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I+  +    GG   + S   +G      +
Sbjct: 655 ISNILAQRMGGGISLNSNEGQGSCFRLEI 683


>gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
 gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
          Length = 966

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 14/295 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSD---ETRKRAEEENLAKSRFLASM 256
                 L +    +     E+   L           +     R+ AE+ + AKS FLA+M
Sbjct: 418 AKAKRELEEHKGHLEELVTERTHQLQDANSRLNQEVENHARARQEAEQASRAKSAFLATM 477

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+N +LG + +++   +    +     Y+  I+RSG  LL ++N++LD S+IEA
Sbjct: 478 SHEIRTPMNGVLGTARLLKDTGL----DRQQGHYVDVINRSGTGLLAILNDVLDYSKIEA 533

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNL 375
           G  E+     +L  +V +   +L  RAQEK++++   I+  +   W  D   + QV+ NL
Sbjct: 534 GHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYFIESDVDKFWFGDMTRIGQVLNNL 593

Query: 376 LSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           + NA+KFT  G   ++V             + D G GI+E E  T+  +F Q S  + S 
Sbjct: 594 VGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVGISEQEQQTLFDAFTQASGGLSSK 653

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             G GLGL I++ ++   GG+  + S++ EG      +P          + HE++
Sbjct: 654 -GGTGLGLAISKRLVEAMGGEIHLESEIGEGSRFWFSVPLQTGQEV---EEHETS 704


>gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 717

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 20/366 (5%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL---STQAI 179
            L L +  +  P  L +      ++  + +   ++ L        F V + L       +
Sbjct: 355 ALYLGQVFSNLPTGLALLDINGKVLRSNPAWDLHWGLHGVARHETFHVTLDLIEHLLPRL 414

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              H L      M  T  +      + +       L     +D          ++SD TR
Sbjct: 415 QDPHKLTTFFEQMQRTPGNDLLTTVHLMNPRQDLELRSVPTRDSKDRITGRLWAVSDVTR 474

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R  E +  K+ F++ +SHELRTPL +ILG++E++      P   E  +++I  +    +
Sbjct: 475 ER--EADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAP---EERQQFITTVFNEAE 529

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+ ++L +SRIEAG+ +L+   ISL +IV E    L          +   I   + 
Sbjct: 530 RLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSL--IKHRLLIDITGEIP 587

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDNG 409
            ++AD   ++Q+I NLL+NA+K++  GG + +T+              G+   +S++D G
Sbjct: 588 PIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHPLGQWIVVSVRDEG 647

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+A  ++P +   F +          G GLGL I+++++  HGG+  + S L  G    
Sbjct: 648 IGMAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRIWVTSTLGRGSRFF 707

Query: 470 AILPNT 475
             LP  
Sbjct: 708 FTLPVA 713


>gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 812

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/281 (37%), Positives = 155/281 (55%), Gaps = 9/281 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLA 254
                L  +++++ +   +     A LE              E ++RAEE N  KS+FLA
Sbjct: 481 RHEQRLVDNDLRLTAYVVDLKRSQAALEQQARELADLAQKYAEEKRRAEEANQTKSKFLA 540

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAI+GFSEV+     GPL +  Y+EY  DI  SG +LL++IN++LD+S+I
Sbjct: 541 NMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQDILTSGNYLLDVINDVLDMSKI 600

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGR +L    + L + V E   +    A  K + +  +ID ++  V AD + M+Q+++N
Sbjct: 601 EAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDSRIDGAIPIV-ADRRAMKQILVN 659

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT  GGR+ V      G    ++I D G GI +  +  +   F Q    +  +
Sbjct: 660 LLSNAVKFTPDGGRIVVR-SRIIGDRVMVTIADTGIGIPKEALARLGCPFEQVESQLTKS 718

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             G GLGL IA+S++  H G   +RS+L  G  V   LP  
Sbjct: 719 YHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINLPCA 759


>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
           platensis NIES-39]
          Length = 730

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 135/258 (52%), Gaps = 13/258 (5%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             ETR  A +    KSRFLA MSHE+RTP++ +LG  E++    + P      K+Y   I
Sbjct: 50  LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTP----QQKDYTQTI 105

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           +RS +HLL +INEILDLS++EAG   L      L D +   + +L ++A++K +E+   +
Sbjct: 106 YRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILL 165

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409
           +P++   +  D   ++QV++NL++NA+KFT   G + + +            Y SI+D G
Sbjct: 166 EPNIPRYLKGDGMRLQQVLINLVNNAIKFT-QSGHIIIRLTPRFINQDQINIYFSIEDTG 224

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++   P +   F   S A      G GLGL I Q ++   GG+  + S+  +G    
Sbjct: 225 LGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQEGDGSIFW 284

Query: 470 AI---LPNTRVLNFIPED 484
                LP+       P++
Sbjct: 285 FTANFLPSELSEIPAPKE 302


>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
 gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
          Length = 935

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)

Query: 200 FTYITYHLFKSNVKI----LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +   L  S +++       + +    +  LEV      + R +A   N AKS FLA+
Sbjct: 237 IASVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLAN 296

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+
Sbjct: 297 ISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKID 353

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ EL  +   L + + + + ML   A +K+I +      ++   V  D    +Q++ N
Sbjct: 354 AGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGDALRFKQILTN 413

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+SNA+KFT   G + V V            + S++D+G G++  +   +  SF QG  +
Sbjct: 414 LISNAIKFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDAS 472

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDN 485
           +     G GLGL I++ ++    GQ             +G              F  ++ 
Sbjct: 473 VTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEE 526

Query: 486 HE 487
           HE
Sbjct: 527 HE 528


>gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 775

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/269 (39%), Positives = 150/269 (55%), Gaps = 2/269 (0%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  + + +   QA  +    EL        + + RAE+ N AKS+FLA+MSHELRTPLN
Sbjct: 496 RLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRAEDANRAKSKFLANMSHELRTPLN 555

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFSE++     G L +E Y EY  DI  SGQ+LL +IN++LD+S+IEAGR +L    
Sbjct: 556 AIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVINDVLDMSKIEAGRMKLDMEP 615

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L   + E + ++  R  +K +    +ID  + ++ AD + ++Q+I+NLLSNAVKFT  
Sbjct: 616 LDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADHRAVKQIIVNLLSNAVKFTPD 674

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV             ++I D G GIA   +  +   F Q    +     G GLGL IA
Sbjct: 675 GGRVMAR-SQVFANSVALTIADTGIGIAPHSLRKLGKPFEQVESQLTKTYAGSGLGLAIA 733

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +S++  HGG   +RSK   G  V   LP 
Sbjct: 734 KSLVNLHGGSMRLRSKPGTGTVVRVTLPR 762


>gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 810

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
            +   N+ +       + LI          +   + +  AE  + AKS FLA+MSHE+RT
Sbjct: 390 RMLGVNLDVTRDVHLHEKLIEANATLLQRNNDLTDAKVAAESADRAKSEFLANMSHEIRT 449

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ILG +E++    +G       +EY+  I  S   LL +IN+ILDLSR+EAGR  +S
Sbjct: 450 PMNGILGMAELMSEADLGA----EEREYLTTIQDSSNALLKIINDILDLSRLEAGRLAIS 505

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
                L + V   + +L+ +A+EK + +      +L   V+ D+  +RQ+++NL+ NAVK
Sbjct: 506 PVDFDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLPEQVYGDDGRLRQILVNLIGNAVK 565

Query: 382 FTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           FT+ GG  V VT          I+++D G GI++ +   +   F Q   AI  A  G GL
Sbjct: 566 FTSEGGVDVKVTCDEQDPYSLEIAVEDTGIGISDSQAEYIFDRFAQADAAITRAFGGTGL 625

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GL I+  +    GG   +     EG     
Sbjct: 626 GLTISSILAKRMGGGIELCRAREEGSCFRL 655


>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 8/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N +KS FLA+MSHE+RTP+NAI+G  ++       P       +Y+  I  S   LL LI
Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLI 468

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILD S+IEAG+  + +    L +I+ +   ++  +A EK +E+   +DP++  +   D
Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGD 528

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTV 420
              + QV++NL +NA+KFT   G V ++              ++++D G G++  +I  +
Sbjct: 529 PHRLGQVLINLTANAIKFTET-GEVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERI 587

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q   A      G GLGL IA  ++   GG+  + S    G      
Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 865

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 12/269 (4%)

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           I+E ++A+   D         RK AE  N  K  FLA +SHELRTPLN ILG+S+++   
Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  +     +  I R+      LI ++LD+SRI  G+  L+   +SL  ++   I 
Sbjct: 523 QFDAATTD---RALETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAID 579

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++L A+ K I+I    DP+L  V  D   ++QV+ NLLSNAVKFT+ GG V + +   +
Sbjct: 580 TVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVN 639

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            + Q I + D G GI    +P V   F Q          G+GLGL I + ++  HGG   
Sbjct: 640 DQAQ-IQVIDTGKGITPEFLPYVFDYFRQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQ 698

Query: 458 IRSK-LREGVEVIAILPNTRVLNFIPEDN 485
            +S     G      LP +     +  ++
Sbjct: 699 AKSPGDGLGATFTVNLPLSPKNEAMNHED 727


>gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 350 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 409

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E + DI  S   LL L+N+ILDLS+IE+GR ELS     + ++V + +I+ 
Sbjct: 410 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 465

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D ++   V  D+  ++Q+I NL+SNAVKFT   G + V V +   
Sbjct: 466 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 524

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKD+G GI   ++ T+   F Q    +     G GLGL I + +++  G
Sbjct: 525 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 584

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+ +  S    G      +
Sbjct: 585 GKLVATSTKGVGTCFGFSI 603


>gi|284053654|ref|ZP_06383864.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 800

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 139/326 (42%), Gaps = 19/326 (5%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +AL     +    +    +  +   +         L     +        D+L      
Sbjct: 354 TIALCLIFFLIAIFIGFRTSLWIVKPILKLNQSAKKLASGEWEETPNLDRTDELGELANS 413

Query: 231 AKSLSDETRK----------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              ++ + ++          + +  +  K+ FLA+ SHELRTPLN  +G +E +     G
Sbjct: 414 FNQMARQLKESFVNLEAKNAQLQHLDKLKNEFLANTSHELRTPLNGTIGIAESMLDGATG 473

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L  E  ++ +  I ++G+ L NLIN+ILD S++     EL   +I L ++V   + + Q
Sbjct: 474 SLT-EIQRKNLLTIAQTGRRLANLINDILDFSKLRHNHIELQLKSIRLRELVEVVLTLSQ 532

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------- 393
              + K +EI   I  +L    ADE  ++Q++ NL+ NA+KFT   G + ++        
Sbjct: 533 PLIKYKQLEIINTISDNLPPAMADENRLQQILHNLIGNAIKFTNA-GTIEISAVELDSHG 591

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    I+I D G GI E +I  V  SF Q   +      G GLGL + + ++  HG
Sbjct: 592 ETEKPEWIEITISDTGIGIQEDKIDRVFESFEQADGSTARQYGGTGLGLAVTKKLVELHG 651

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLN 479
           G+  + S++  G      LP      
Sbjct: 652 GKIWLESEIGVGSRFHFSLPIAESEP 677


>gi|283850550|ref|ZP_06367838.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574121|gb|EFC22093.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 536

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 146/327 (44%), Gaps = 11/327 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
             V ++         V   ++       LS      + L +S    +  +  + +L   +
Sbjct: 80  LAVPSIFLTGQGDREVDLKAMEAGATDYLSKSMLNAHLLERSVRYAIRNKRAELELEERV 139

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
               +   +  + AE  N AKS FLA+MSHE+RTPLN ILG  ++++        +   +
Sbjct: 140 RDRTAQLQKAVEEAEAANRAKSDFLANMSHEIRTPLNGILGMLQLLQTT----DADPEQR 195

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EYI +  +S Q L  L+ +ILDLSRIEAGR  + E+A          I      A+ K +
Sbjct: 196 EYITNAIKSSQRLTRLLADILDLSRIEAGRLPIVETAFEFKSQQEAVIETFDQAARGKGL 255

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQY 402
            +   +D  + + +  DE  +RQ++ NL+ NAVKF+A  GRV VT     +         
Sbjct: 256 ALDFLVDDRMPAALIGDETRLRQILFNLVGNAVKFSAY-GRVAVTATPMHLRDDGSLRVL 314

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            ++ D G GI +  +  +   F Q   A     QG GLGL I + +++  GG+  I S  
Sbjct: 315 FTVTDTGIGIPDHLLADIFEPFSQVEGAYSRRFQGAGLGLAIVRRLVSLLGGELDIDSTE 374

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
             G  +   LP  R  +        +T
Sbjct: 375 GRGTAIYLTLPFRRPRDAPARSEGPAT 401


>gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 862

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 153/406 (37%), Gaps = 14/406 (3%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
           +        +            I        +TL  PG            A  +  LS+ 
Sbjct: 44  LRRYREANAQRRAVLDAASRMSIIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLH 103

Query: 153 ALSNFMLPYAVFLSFFPVVVALST----QAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
              +     A   +       +       ++      +        T L     IT    
Sbjct: 104 TTEDLERHRASLKATLTSSTGMEIFEHYTSLQQHDTGEWQYICSDGTLLPVSLSITSIYN 163

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
              ++        D  +   +  +      ++ AE+ +  +  FLA MSHE+RTP+NAI 
Sbjct: 164 AEGMREGYLFTAMD--LTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAIT 221

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++    +    N   ++Y+  I  S   LL +IN+ILD S+I+AGR EL E   SL
Sbjct: 222 GMAYLLGSTEL----NHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSL 277

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             I+   + ++  RA+EK ++I   I P +  S+  D   + Q+ILNL SNAVKFT+ G 
Sbjct: 278 QQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGE 337

Query: 388 ---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
               V +             + D G GI   +   +  +F Q   +I     G GLGL I
Sbjct: 338 VALTVTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAI 397

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + +    GG+  + S   +G          R     P  + +   
Sbjct: 398 CKELTQMMGGEIWVESIPDQGSSFFFTACFRRNEQAEPGPDQDYPD 443


>gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
 gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
          Length = 620

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 32/321 (9%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               +++A++          +             +        +S +KI    AE +   
Sbjct: 85  FTVTIILAIALGIFSWRRWRE-----------CEYELTYRKSIQSQLKIAKDIAETEK-- 131

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + E+A+  ++  +++AE  N AKS FLASMSHELRTPLN ILG+++++         N 
Sbjct: 132 KQAEIARKEAEVAQEKAEIANQAKSEFLASMSHELRTPLNGILGYAQILRR---DKSLNN 188

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +  I  + +SG+HLL LIN+ILDLS+IEA + EL +        + E + M+Q+RA  
Sbjct: 189 QQQYAIHTMQKSGEHLLTLINDILDLSKIEAQKMELHQQDFHFSHFLTEIVDMIQVRAMP 248

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K +E     + +L  +V  DE  +RQ+++NLL NAVKFT   G+V   V     +     
Sbjct: 249 KTLEFQHDFEANLPIAVNGDETRLRQILVNLLGNAVKFTER-GKVTFKVILIGEKEKKIE 307

Query: 401 ---------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        I+D GPGIA   + T+   F Q         +G GLGLP++Q  +  
Sbjct: 308 NRESSPLPNIRFQIEDTGPGIAPEFLKTIFEPFQQVGTER-YITEGTGLGLPLSQKFVEM 366

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
                 + S + EG      L
Sbjct: 367 MDSSLQVTSTVGEGSIFWFEL 387


>gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
 gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
          Length = 869

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SNFTE 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++I  I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEVTQFIATINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
                + +        +  D   ++QV+ NL++NA KFT   G +              I
Sbjct: 741 AGVELVLRMPAGDKKYLTTDNVRLQQVVNNLINNAAKFTGS-GFITFGYEEDEEPGYTRI 799

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S++ 
Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLKGTISVTSEVG 855

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 856 KGTRFTVRLP 865


>gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 569

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           K+ L   +E+        R+ +E  N AKS FLA MSHELRTPLN++LG  +V++   M 
Sbjct: 182 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 241

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                 +   +  +  S   LL +I++ILDLS+IE+G + LS   I++ D V   +   Q
Sbjct: 242 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 297

Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           L A  K + I   I+       W D   + QV+ NL+ NAVKFT   G++ + V      
Sbjct: 298 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 355

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GI + +I ++ T+F Q   +I     G GLGL I + ++    G   + 
Sbjct: 356 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 415

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G   +  +P  
Sbjct: 416 SQFGKGSTFVVKIPVK 431


>gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1194

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 16/381 (4%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
              +++  +       ++ +     ++  +LT     + +I + ++++        +   
Sbjct: 377 LNIIVLPVLFETEVIAVIEIASFHRFSQLHLTFIDQFSEVIGVFLNSIYASAQTQNLLDE 436

Query: 167 FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
              +   L  S Q +        +   +L             L + N ++       +  
Sbjct: 437 SVALAAELRQSNQLLEQQTQDLENSEFLLKQQQQELQQSNEELQQLNEELEEKAELLELQ 496

Query: 225 IAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E+       ++ R    ++AE+    +  KS FLA+MSHELRTPLN++L  ++++   
Sbjct: 497 NNEVARKNQEIEKARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADN 556

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           + G L+N+   EY   I+ +G  LL LIN+ILDL++IE+G   +    I   D+      
Sbjct: 557 SSGNLSNKQV-EYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKR 615

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
             Q  AQ+K +    + D  L  ++ +D K ++Q++ NLL+NA KFT  GG V++ +G  
Sbjct: 616 TFQQVAQDKGLSFSIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGG-VNLRIGLD 674

Query: 396 ---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              T+      +I D G GI + +   +  +F Q          G GLGL I++ +    
Sbjct: 675 QINTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQML 734

Query: 453 GGQFLIRSKLREGVEVIAILP 473
           GG+  + S+  +G      LP
Sbjct: 735 GGRLGLVSQPGQGSTFTLYLP 755


>gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 869

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 854 VGKGTRFTVRLP 865


>gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 978

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 140/265 (52%), Gaps = 9/265 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +       +    AE  N AKS FL++MSH++RTP+NAI+GF+ +         + E
Sbjct: 445 TADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTLAISNI---DDKE 501

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+Y+     S  HLL+LIN++LD+SRIE+G+  L E  ++L +++ +   ++  +   
Sbjct: 502 RVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKTIVSGQIYA 561

Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           K +E++   +D +   V+ D+  + Q++LNLLSNA+KFT  GG V V V   +G+ +   
Sbjct: 562 KQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGQVRGCG 621

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                IKDNG G++      +   F +   +  S  QG GLG+ I ++I+   GG   ++
Sbjct: 622 QYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQ 681

Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484
           +   +G E I  +P        P +
Sbjct: 682 TAQGKGSEFIIRVPLRVQAEHRPVE 706


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 854 VGKGTRFTVRLP 865


>gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 616 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 673

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 674 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 733

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 734 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 790

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 791 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 846

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 847 VGKGTRFTVRLP 858


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 543 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 600

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 601 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 660

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 661 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 717

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 718 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 773

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 774 VGKGTRFTVRLP 785


>gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 869

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 854 VGKGTRFTVRLP 865


>gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 852

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/330 (31%), Positives = 158/330 (47%), Gaps = 26/330 (7%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +      +A +    L I+L  +   + +        L +  +     Q E      
Sbjct: 291 LALLAEMSQQEAFLPARRLAITLTIVGLGSAAILLLGVNRLVR-QLSRSRLQIESYS--- 346

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE-----TMGP 281
                    ++T   A   N AKS FLA+MSHELRTPLNAILGF+++++ +         
Sbjct: 347 ------QQLEKTALAANTANKAKSEFLANMSHELRTPLNAILGFTQLMQSDHANTTYFQK 400

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +  Y  Y+G I RSG HLL LIN++L +S+IEAGR  L  +   L  ++R    ML +
Sbjct: 401 ERSSDYNNYLGIISRSGGHLLTLINDVLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSM 460

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           RA+ K I +  ++D ++   V  DE  +RQV++NL+ NA+KFT   G V ++V   +   
Sbjct: 461 RAEAKAITLSVQVDQAVPQFVKTDEAKLRQVLVNLVGNAIKFTPT-GSVTLSVSCENIPS 519

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            Y    SI D G GI+  ++  +   F Q S     A QG GLGL I+Q  +   GG+  
Sbjct: 520 LYRLNFSIVDTGVGISAEDLSCLFDPFFQASRTRT-AHQGTGLGLAISQRFVQMMGGEIN 578

Query: 458 IRSKLREGVEVIAIL---PNTRVLNFIPED 484
           + S + +G      +   P    L+ +P  
Sbjct: 579 VESIVDQGSTFSFSIQAQPAE--LDELPTA 606


>gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 869

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 854 VGKGTRFTVRLP 865


>gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
 gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
          Length = 885

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 487 ITELEIIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+         
Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 658

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 714

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 715 KGTTFTFTLP 724


>gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
 gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
          Length = 1125

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 15/262 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++        + E  +  +  I  SG+ 
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N++LD+S+IEAG+ EL     +L  ++ + + +++  A +  + +  +IDP L  
Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPV 698

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410
            V  D   +RQV+ NLL+NAVKFT   G V +T  +                  I D G 
Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I   ++   GG   + S+   G     
Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817

Query: 471 ILPNTRVLNFIPEDNHESTQYK 492
            L   R     P      + ++
Sbjct: 818 TLALPRA-TTPPAAQPAISPHR 838


>gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 509

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPL--NNETYKEYIGDIHRSGQHLLNLINEIL 309
           FLA++SHELRTPLNAI+G+SE++  E       +   +++ +  I RSG+ LL LIN+IL
Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IE G+  L        +++ +    +  + +E+N ++ +    SL +++ D    R
Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           Q+  NLLSNA KFT   G + V             I+++D G G+ E +   V  +F Q 
Sbjct: 395 QIFTNLLSNACKFTNA-GYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQA 453

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +  +   G GLGL I +      GG   + S+   G     +LP
Sbjct: 454 DASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499


>gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
 gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
          Length = 858

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194
           ++  A   I +   A     +  A            +   +        V  + +A   A
Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248
           T       I   +F+ N+  +    +   +I + +       A+  S+  R+ AE+   A
Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ FLA MSHE+RTP+N ILG +++++         E  K  I  +  SG+HLL ++N+I
Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367
           LD S+IE G++ + +   S  D +R    + +   + K +E+  +        ++ D+  
Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENRLDGNVEIFTDQVR 597

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422
           + Q++ NL+SNAVKFT   G V +                + I D G GI   ++  +  
Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479
            F Q          G GLGL I ++++    G   +RS+  +G   +  LP     RVL 
Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716

Query: 480 FI 481
            +
Sbjct: 717 PL 718


>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
 gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
          Length = 936

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/366 (23%), Positives = 152/366 (41%), Gaps = 24/366 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182
           L+      P  L  YK    L+   +  L   +    VF      P+    +  Q + + 
Sbjct: 156 LMVELDNHPLELARYKILLSLVVTGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236
            +    +             I   + + +   L  +   +    +L       +      
Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275

Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R +A   N +KS FLA++SHELRTPLN+I GF  ++  +      +     Y+  I 
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S  HLL LIN++LD S+I+AG+ EL  +   L + + + + ML   A +K+I +     
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
            ++   V  D    +Q++ NL+SNA+KFT   G + V V            + S++D+G 
Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDEIGQCLLHFSVQDSGI 451

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465
           G++  +   +  SF QG  ++     G GLGL I++ ++    G              +G
Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKG 511

Query: 466 VEVIAI 471
                 
Sbjct: 512 STFWFT 517


>gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
 gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
          Length = 1125

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++        + E  +  +  I  SG+ 
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N++LD+S+IEAG+ EL     +L  ++ + + +++  A +  + +  +IDP L +
Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410
            V  D   +RQV+ NLL+NAVKFT   G V +T  +                  I D G 
Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I   ++   GG   + S+   G     
Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817

Query: 471 ILPNTRVLNFIPEDNHESTQYK 492
            L   R     P      + ++
Sbjct: 818 TLALPRA-TTPPAAQPAISPHR 838


>gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 934

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 10/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            ++    +      +   ++ +  +    +  + A+  N AKS FLA+MSHELRTPLN I
Sbjct: 373 IRNIHNQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHELRTPLNGI 432

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG ++++E           +KE +  +  SG HLL+L+N+ILD+S+IE G+ EL +   +
Sbjct: 433 LGMAQILESSV----TQAQHKEQLSVLLESGNHLLSLLNDILDISKIEEGKLELEDIDFA 488

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           + ++    I        EK I+       PS  S   D+  +RQ+I NLL NAVKFT  G
Sbjct: 489 IDELCSPIISTYSAICNEKGIQFKLNNQLPSGKSFRGDKSRIRQLIFNLLGNAVKFTERG 548

Query: 387 GRVHV-----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
               V     +    S     I + D G GI    + T+   F Q   +      G GLG
Sbjct: 549 SVELVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEASTTRQFGGTGLG 608

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I + +    GG   + S+L +G +    
Sbjct: 609 LAIVKKLSNLMGGDAYVSSELGKGSKFTVT 638


>gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 609

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  + +F+A++SHELRTPL  +  + E +        + E    +I  +    + ++
Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKEITPRFIQVVQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ I+      + I   +L  +  NI   + I      + 
Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELT-KSDNIRFVRNIPREAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG +   V   +     ISI D G GI + ++  +  
Sbjct: 488 VDEDKITQVLDNIISNAIKYSPQGGTITFRVRELAD-EIIISISDEGVGIPKADLAKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLPLER 600


>gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1031

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E    AE  N AK+ FLA+MSH+ RTP+NAI GF  ++  +       +  KE
Sbjct: 506 RRNHQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGF-NLLIDK--HAEEPDKVKE 562

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I  + Q+LL+++N++LD+S+IE+G+  L    + +  ++ E   ++  +A+ KN E
Sbjct: 563 YTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINSVISFQAKNKNQE 622

Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYI 403
              KI+     +   D++ + ++++N+L NA+K+T  GGR+  T+  +       +    
Sbjct: 623 YIVKIEDMQHDIFMGDKQRINEILMNILGNAIKYTPEGGRIEFTINESPSSSEGFQNVTF 682

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +IKDNG G+       +  +F +         QG GLG+ I +S++   GG   + S+  
Sbjct: 683 TIKDNGIGMKPEYKDKIFDAFSREEKGATKTIQGTGLGMAITKSLVELMGGTIRVDSEEG 742

Query: 464 EGVEVIAILPNTRV 477
           +G   I  L    V
Sbjct: 743 KGSTFIVNLRLKAV 756


>gi|237644063|emb|CAY85453.1| histidine kinase 1 [Claviceps purpurea]
          Length = 1335

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 139/268 (51%), Gaps = 14/268 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 691 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 750

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 751 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 806

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 807 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 865

Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           T+   + +             ++D G GIA+ ++  +  +F Q   ++     G GLGL 
Sbjct: 866 TIKERANQQDVGGGEYSIEFIVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 925

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++   GG   + S+  +G +    
Sbjct: 926 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 953


>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 882

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E + DI  S   LL L+N+ILDLS+IE+GR ELS     + ++V + +I+ 
Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D ++   V  D+  ++Q+I NL+SNAVKFT   G + V V +   
Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 528

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKD+G GI   ++ T+   F Q    +     G GLGL I + +++  G
Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+ +  S    G      +
Sbjct: 589 GKLVATSTKGVGTCFGFSI 607


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 6/317 (1%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            A F     +     +  I    +L                  +  +             
Sbjct: 439 LAAFGRSLNLSFYGQSWRIHWRPMLSEFSRIFAWQITLVIAIASVAVLLIQFIAFRTGTL 498

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +  E+E   +     ++ AE+  +AKS+FLA+MSHE+RTPLNAI+GF+E+ + E+  
Sbjct: 499 TEVIQEEVERKTNDLTNAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDESNL 558

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                T + ++  I  S + LL L+N++LD S++EAG+ EL  +  SL ++ +    + +
Sbjct: 559 M----TIQSHLKGISSSSEALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIFE 614

Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSG 398
            +A+ + +     +D P+   + +DE  ++Q+++NL SNA+KFT  G   V + V     
Sbjct: 615 TQARARGLSFRIDVDCPANKDIVSDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQE 674

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + +KD G G+ E E   +   F Q   +I     G GLGL I  ++     GQ ++
Sbjct: 675 TQLMLVVKDTGIGMTESERARIFDQFTQADSSITRHYGGTGLGLSITMTLTELLDGQVMV 734

Query: 459 RSKLREGVEVIAILPNT 475
            S+   G +    LP +
Sbjct: 735 ESEQGVGSQFTIRLPVS 751


>gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 623

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 1/228 (0%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +K+RFLA++SHELRTPLNAI+GFSE++    + P +    +EY   I  SG HLL ++N
Sbjct: 357 ASKTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVN 416

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ILD+S+IE+G  ++     SL  ++ +C  M+QL+A +  + + +     +  + AD++
Sbjct: 417 TILDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKR 476

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             +Q++LNLLSNAVKFT   G+V + +    G    IS+ D+G GIA  ++  +   F Q
Sbjct: 477 ACKQILLNLLSNAVKFTPANGKVKIRLAP-EGNHLGISVIDSGIGIAPADLARLGDPFFQ 535

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            S +     +G GLGL + + ++  HGG   + S  R+G  V   LP 
Sbjct: 536 ASASHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLPL 583


>gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1210

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 144/295 (48%), Gaps = 34/295 (11%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               I + + A     + +  AE  N AKS FLA+MSHELRTPLN ILGF++V+      
Sbjct: 691 ALRDITKRKQADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSR---D 747

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P      +E +  I++SG HLL+LIN++LDLS+IEAG   + ES   LI ++R    M Q
Sbjct: 748 PAITPEEQENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQ 807

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +A+ K +++   I   +   + AD   +RQV++NLLSNA+KFT   G +++ V      
Sbjct: 808 HKARAKGLQLHLNIAADVPHYIQADSNKLRQVLINLLSNAIKFT-QNGSINLRVALLKAE 866

Query: 400 G----------------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           G                             +  + D G GIA  E+ ++  +F Q   A 
Sbjct: 867 GNDHGSDAEDMITPPSSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTH-AG 925

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           K A +G GLGL I++  +   GG   + S+L +G      +P         E  H
Sbjct: 926 KVANEGTGLGLAISRKFVQLMGGDIQVSSQLNQGSTFSFEIPVHLADASDMEPIH 980


>gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1088

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 163/317 (51%), Gaps = 9/317 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A+    + S   + +  +      L+ FT       + +   L   A       + E A+
Sbjct: 635 AVLDARLKSGISVAVKGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAE 694

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + R++AE  + AK+ FL+ MSHELRTPLNAILGF++++E ET+GP    +  E + 
Sbjct: 695 ESIRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGP----SLAESVE 750

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            + R+G+HLL+LINE+LD+SRI+AGR+ LS   I +   + E I  +Q  A    I +  
Sbjct: 751 HVSRAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTL 810

Query: 353 KI---DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +    +     V AD + + QV+ N+LSNAVK+  I GRV V+     G    I+I D G
Sbjct: 811 EPATAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVSY-RVDGPRIRITIADTG 869

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++  +   F +   A  +  +G G+GL +++ I+    G+  + S++ EG    
Sbjct: 870 RGIEPEKLSRLFLPFERL-GAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFW 928

Query: 470 AILPNTRVLNFIPEDNH 486
             LP    ++ + E + 
Sbjct: 929 LTLPRADEISPMEEPSP 945


>gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 577

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 154/343 (44%), Gaps = 8/343 (2%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLA 194
            +    + +I L++S      +      +       L  +  +      + LA    ++ 
Sbjct: 195 FLTLVVSAVIGLTLSGNIARRIRTLRDATVAVAQGDLDQRVALRGSDELVLLANNFNLMV 254

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +L     +           L  Q +  D + + + A+  +   +  AE  + AKS FLA
Sbjct: 255 ASLRQQRVLLEERNAELSASLEAQRKLMDDLVQRKQAEEAAHRAQAAAEAASHAKSMFLA 314

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAILG+ +++ LE      +E   + +  I  +G+HLL +I+ ILD S+I
Sbjct: 315 TMSHELRTPLNAILGYVQLLHLEAHMRGRSEMLPD-LERIRSAGKHLLTIISNILDFSKI 373

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E G+  +  +  S+  + RE I ++   A+ +   +     P    + +D   +RQ++ N
Sbjct: 374 EQGKMNVEINPFSVDTVAREVIGIIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQILFN 433

Query: 375 LLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           LLSNAVKFT   G V +TV       G     S+ D G GIA  ++  +   F Q     
Sbjct: 434 LLSNAVKFTEE-GTVTLTVERERHPDGDWVQFSVADTGIGIAPEQMAHLFQPFYQVHQNR 492

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL +++ +    GG   + S++  G      LP 
Sbjct: 493 SRNYGGTGLGLALSRQLCRLLGGDIRVTSEVGRGSVFTVRLPA 535


>gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 570

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 169/422 (40%), Gaps = 27/422 (6%)

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
              +  ++ ++          +  + +                 V  + +     +   +
Sbjct: 5   SERLLTVFCILAGLSGLCVNIINTRFL-----PDYAAEVGTGFAVSALLL-----IAPYL 54

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
             G             T++  L + +L N  L     L   P V+       +S  ++ +
Sbjct: 55  INGRSNFNLRVRVIGLTVVGVLGLLSLINGNLTNVCNLGLIPAVLTFCLVLGVSDGLMIV 114

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV--------AKSLSDETR 239
             +  +  A  F +        S   +L+        +             A       +
Sbjct: 115 LFSIGVYLATYFMSRAGGAAPSSLETLLAGLILSQIFVYVSAAFFRFNMMAAVKALAAEK 174

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE+ N AKS+FLA+MSHE+RTPLN +LG + V+ L  +    +E  ++ +  I  SG 
Sbjct: 175 AKAEQANQAKSQFLANMSHEIRTPLNGVLGMTAVLALSKL----DERQRKAVEVIRMSGD 230

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL+ +N+ILDL++I+AG+ ++      L D+  +   +   +A++  +    + +  +S
Sbjct: 231 HLLSTLNDILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVS 290

Query: 360 SV---WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415
           +      D   + Q++ NL+SNA+KFT  GG V ++           + ++D G G+   
Sbjct: 291 AHSLRVGDPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVD 349

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  V   F Q   +      G GLGL I + ++    G+  + S+   G      LP  
Sbjct: 350 QLERVFMPFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLPFR 409

Query: 476 RV 477
            V
Sbjct: 410 PV 411


>gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 676

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               R  AEE +  KS FLA+MSHE+RTPLNAI+G S+++         +   +E +  +
Sbjct: 278 LIRARVEAEEASRMKSAFLANMSHEIRTPLNAIMGLSQLLLKTG----PSPQQRECLETM 333

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G+ LL ++N++LD SRIE GR E+    + L  ++ E   ++   A E+ + +  + 
Sbjct: 334 RSAGEGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIER 393

Query: 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYISIKD 407
           DP L  V   D   ++Q++LNLLSNA+KFT  G  V             +       ++D
Sbjct: 394 DPKLPRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRD 453

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREGV 466
            GPGI E     +   F Q   A+     G GLGL I+  ++   GG    + S+  +G 
Sbjct: 454 TGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGS 513

Query: 467 EVIAIL 472
                L
Sbjct: 514 TFHFTL 519


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/402 (26%), Positives = 168/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +    T+L  + +++ + F      FL+
Sbjct: 791  KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELASFTPFTHIQKDFLN 850

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
                ++A S   I      +  LA                    K+     +   EK +L
Sbjct: 851  QIAEMIATSVNTISVNTKTESLLAQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 910

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A      EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 911  LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 970

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +         +    E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 971  LADNA-DANLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1029

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G   + +
Sbjct: 1030 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1089

Query: 392  TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                     G     S+ D G GIA  ++  +  +F Q      
Sbjct: 1090 RPARDDVPQAIREQLLETGSLTDPDGGLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1149

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1150 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1191


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/277 (33%), Positives = 144/277 (51%), Gaps = 8/277 (2%)

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +  L A+ E   SL    R++AEE N  K  FLA +SHELR+PLN ILG++++++ +   
Sbjct: 1166 QKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSHELRSPLNPILGWAKLLQTQNF- 1224

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N ETY++ +  I R+      LI ++LD+SRI  G+  L    ++LI I+   +  ++
Sbjct: 1225 --NAETYQKGLSTIERNAALQAQLIEDLLDISRIMRGKLNLKIVPVNLIFIIESALETVR 1282

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            L A+ K I I + +D ++  V  D   ++Q++ NLLSNAVKFT  GG+V+V +   SG  
Sbjct: 1283 LAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNAVKFTPTGGQVNVKLE-GSGNE 1341

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I++ D G GI+   +P V   F Q          G+GLGL I + ++  HGG     S
Sbjct: 1342 AVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGLGLAIVRHLVELHGGTVTANS 1401

Query: 461  K-LREGVEVIAILPN---TRVLNFIPEDNHESTQYKC 493
                +G      LP      +      D  ES Q + 
Sbjct: 1402 PGENQGATFSVKLPLINQDTIPKTDSTDITESHQQRS 1438


>gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            sp. BNC1]
 gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
            sp. BNC1]
          Length = 1192

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/259 (38%), Positives = 156/259 (60%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I   + A+    + R +AE  +  KS FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 934  LRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIRTPLNAIIGFSELMIDEKFGP 993

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++  A+ L D + + I M+Q 
Sbjct: 994  IGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAHEAVPLNDTLAQVIAMMQP 1053

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I   +   L  V AD + +RQ+ +NLLSNAV++T  GG+V V+  +      
Sbjct: 1054 QANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVRYTPAGGQVVVSTVYERDGSV 1113

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + ++D G G++  E+   L  F Q +   +    G GLGLP+ ++++  +  QF I S 
Sbjct: 1114 VLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLGLPLTRAMVEANRAQFSIAST 1173

Query: 462  LREGVEVIAILPNTRVLNF 480
              EG  V  I P TRVL  
Sbjct: 1174 PGEGTLVEIIFPPTRVLAE 1192


>gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 771

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  ++     R++AEE +  K  FLA+MSHE+RTPLNAI+GFS+++  +   PL  
Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   E+I  I ++   LL LIN+ILDLSRIE+G    S   + L  ++ +     QL   
Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403
           E  +E+  ++      + +D   + QV  N ++NAVKFTA  G + +    ++      I
Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + +   V   F +         QG GLGL I QSI+    G   + S++ 
Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVS 750

Query: 464 EGVEVIAILP 473
            G +    LP
Sbjct: 751 VGSKFTISLP 760


>gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 546

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 16/329 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L  A F     V  ++     +    L    A         +  +        V +LS  
Sbjct: 220 LTIATFFLLATVGGSIWLSRRLVTEPLQRLCAMARRLGEGDWRAVQVVSGSGEVMVLSQV 279

Query: 219 AEKDD---------LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
            EK           L  ++        +  +     N  KS  LA++SHELRTPL A+L 
Sbjct: 280 LEKVAGQLWESHHLLEQKVAERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLA 339

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           ++E++   T GPL  E  +E + +I  S + LL  I ++L ++R+EAGR EL      + 
Sbjct: 340 YTEMLLDPTTGPLTPE-QRECLENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMA 398

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V+E   +L   A++K I++    +     V AD   ++ ++ NL+SNA+KFT+ GG+V
Sbjct: 399 EVVQEVFSLLGPLARKKRIKLCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKV 458

Query: 390 HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V + +     +Y  + + D G GI   E   +   F +     K   QG GLGL + + 
Sbjct: 459 TVKLSYGFDTTRYMLVKVTDTGVGIDPAEQEVIFEKFYRS----KKHSQGTGLGLTLVRE 514

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++  HGG+  + S   +G      LP   
Sbjct: 515 LVQLHGGRVWVESIPGQGSSFYFTLPLKE 543


>gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 936

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 13/316 (4%)

Query: 181 SMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + +   +   G+   ++   F   +T    +  +     +  ++DL    E  ++   E 
Sbjct: 495 TWYAWYVLAGGLFVLSIISSFLLIVTGKENRLKLVTKKLEESENDLKLANEELEAKVRER 554

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            K+    N  KS FLA+MSHE+RTPLN ILG S ++       +  +   EY+  I RS 
Sbjct: 555 TKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLLYER----MEKKENIEYLNIIKRSS 610

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL +IN+ILD S+IE+   EL      L   + +   ++   +  +N +I    D  L
Sbjct: 611 EDLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQN-KIEIFWDNDL 669

Query: 359 SSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIA 413
           + V+  D   +RQ+++NL+ NA KFT   G++ +TV   S   +     I +KDNG GI 
Sbjct: 670 TKVYTSDRLRIRQILINLIGNANKFT-TNGKIEITVKELSSSQEISNLQIIVKDNGIGIP 728

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +  SF Q  I+      G GLGL I++++    GG     S+  +G      + 
Sbjct: 729 ATSQSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGTTFTFSIS 788

Query: 474 NTRVLNFIPEDNHEST 489
            T+  +   E+N  ++
Sbjct: 789 LTKATDSEIENNFNAS 804


>gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 623

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 145/254 (57%), Gaps = 11/254 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E +N  K++FLA+ SHE+RTPL +I+GF+E++  +       E ++EY+  I  SG+HL
Sbjct: 232 LERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYEAE-RERHQEYLQIIQSSGKHL 290

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L+LIN+ILDLS+IEA + E+     ++  + +  + +++ +A +K +++  +I+  ++++
Sbjct: 291 LSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLALVKEKAGDKGLKLQLEINEDVNTL 350

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   ++Q++LNLL NA+KFT + G V + V          ++ D G GI++ ++  + 
Sbjct: 351 LVDPLRLKQMLLNLLFNAIKFTNV-GSVGLRV-VLKDSWLRFTVWDTGVGISQEDLSLLF 408

Query: 422 TSFGQGSIAIKS---AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--- 475
             + Q    I +      G GLGL + + +   HGG   +RS+L +G E   ILP     
Sbjct: 409 RPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTIILPLKSER 468

Query: 476 --RVLNFIPEDNHE 487
             ++L   P+ + E
Sbjct: 469 TTQILEIQPKPDLE 482


>gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 805

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E   LI  +       +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++ 
Sbjct: 320 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 379

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    NE  ++++  ++ SG H++ L+NEILD S+IE G  E   +      I+   
Sbjct: 380 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 435

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++       P+     AD+  +RQV+ NLL+NAVKFTA  G V V   
Sbjct: 436 NSVYYTLCAEKGLQFKVYSTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 494

Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I +KD G GI E     +   F Q   +      G GLGL I + I   
Sbjct: 495 EHTREQANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 554

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            GG   + S++  G      L         PE      +YK
Sbjct: 555 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 592


>gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 478

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 133/315 (42%), Gaps = 21/315 (6%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                   +  +    +  +    +Y+++ + +    I    AE         V    SD
Sbjct: 163 TFGQMRESILWATLFGVLLSTIMVSYLSWSISRPLRTIERTAAEIGRGNYAERVQVDTSD 222

Query: 237 ETRKRAEEEN-----------------LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    A+  N                   ++ FLA++SHELRTPL AI GF E ++   +
Sbjct: 223 EISDLAQTINTMAQKLEKVEQERHHLEQVRNDFLANVSHELRTPLTAIQGFLEALQDGLV 282

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  ++Y   ++     +  L+++++DL ++E     L +  + + D++       
Sbjct: 283 --EEEEARQKYYAVMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRVAFSF 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A+EK + +  +++  L  ++AD+  + Q++ NL+ NA+KFT+  G + +      G 
Sbjct: 341 HQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNLVKNALKFTSA-GEIRMRASL-DGE 398

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GIA  ++  +   F +         +G GLGL I + ++  H G+  + 
Sbjct: 399 YVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKCRVE 458

Query: 460 SKLREGVEVIAILPN 474
           S   +G      LP 
Sbjct: 459 SSPGKGSTFTIWLPR 473


>gi|169335265|ref|ZP_02862458.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258003|gb|EDS71969.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
          Length = 818

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 137/270 (50%), Gaps = 9/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           F+++ KIL    +  D+I + E  K    E  + A   N AKS FL+ MSH++RTP+NAI
Sbjct: 266 FENHKKILITLRDIQDMIQKEENNKIALKEAYESAARANEAKSEFLSRMSHDIRTPMNAI 325

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G + + +     P   +   E +  I  S  HLLNLINE+LD+S+IE+G+  L+   I+
Sbjct: 326 FGMTSIAKNNLNDP---DKILECLDKITISSDHLLNLINEVLDMSKIESGKLSLTSEKIN 382

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L+ +V + I ++     +K+  +       + S V +D   +RQV LN+LSN++K+T  G
Sbjct: 383 LLHLVEDAITIISPDISKKHQNLSLDTSGVTHSDVISDSLRLRQVFLNILSNSMKYTPEG 442

Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G + + V                 KD+G G+ E  I  +   F +   +  +   G GLG
Sbjct: 443 GNIELKVNEVKSTLEGYGRYEFIFKDDGIGMNEEFINKIFAPFERADDSRINKVHGTGLG 502

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           + I +SI+    G  ++ SK   G +   I
Sbjct: 503 MAITKSIVDLMSGDIVVESKKGRGSKFTVI 532


>gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1172

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|237748048|ref|ZP_04578528.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379410|gb|EEO29501.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 796

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +S+  +L+ + +  ++I E    K L  +    A   N AKS FL+ MSH++RTP+NAI+
Sbjct: 243 RSHNILLATRTDITEIINE-RQQKKLLQDALNAANVANRAKSEFLSRMSHDIRTPMNAII 301

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + +         N E   + +  I  S + LL+LINE+LD+++IE+GR  LSE  ++L
Sbjct: 302 GMTAIAGAHLA---NQERMSDCLQKITTSSRLLLSLINEVLDMAKIESGRIILSEEEVNL 358

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+V   + M+Q   ++K         +     V  D + ++QV+LN LSNA+K+T   G
Sbjct: 359 GDLVTSLLSMIQPDLKKKGHRFDVHLFNIDEEWVICDSQRIQQVLLNFLSNAIKYTPDNG 418

Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            +   +                 +DNG G+  G +  V   F +       + QG GLG+
Sbjct: 419 HIVFEITQLPSSENGFGKYRFIFRDNGIGMTPGFLEKVFEPFERADEVSIQSIQGTGLGM 478

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            IA++I    GG   + S+  +G      +P
Sbjct: 479 AIAKNIAEIMGGHIGVESEHGKGTTFTLTIP 509


>gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 805

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E   LI  +       +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++ 
Sbjct: 320 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 379

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    NE  ++++  ++ SG H++ L+NEILD S+IE G  E   +      I+   
Sbjct: 380 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 435

Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +      EK ++       P+     AD+  +RQV+ NLL+NAVKFTA  G V V   
Sbjct: 436 NSVYYTLCAEKGLQFKVYTTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 494

Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I +KD G GI E     +   F Q   +      G GLGL I + I   
Sbjct: 495 EHTREQANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 554

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            GG   + S++  G      L         PE      +YK
Sbjct: 555 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 592


>gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
 gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
          Length = 470

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 30/360 (8%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +   +    L   +     P   AL  +A   +  +          +          L  
Sbjct: 105 AELIIRAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRQDGSRLSAMVSVTALRN 164

Query: 210 SNVKILSCQ------AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +  I+           +    A+ +  +   +E     E  +  KS FLA+MSHELRTP
Sbjct: 165 RSDMIIGYLLIGTDNTARKQEEAQRKRFERALEEKNLELEHASRMKSEFLATMSHELRTP 224

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNA++GFSE ++   +G +++ T +EYIGDI  SGQHLL+LIN+ILDLS++EAG  +L  
Sbjct: 225 LNAVIGFSEALKDGLVGAMSD-TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMDLEL 283

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L  ++   +++++ +A ++ I++       L ++  D++  +Q++ NLL+NAVKF+
Sbjct: 284 EPVELAGLLANSLLIVREKAAQQRIQLKLDSQGDLGTLMLDQRKTKQIVYNLLANAVKFS 343

Query: 384 AIGGRVHVTVGWTSGRGQ-----------------------YISIKDNGPGIAEGEIPTV 420
           A  G VH+ V                                +S+ D G GIA  ++  +
Sbjct: 344 AHAGFVHLAVCEVDRDQVGLVPGDWPVYGFALQPSVHQRFLELSVSDTGIGIAADDMGKL 403

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             +F Q   ++    +G GLGL + + +   HGG   + S+   G   +  LP  R    
Sbjct: 404 FKAFSQIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGLGARFVVWLPLHRAKPT 463


>gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 369

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 10/266 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A +    ++KRAE  + AKS FLA+MSHE+RTP++ ILG + ++    +        +E
Sbjct: 8   KANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQLTA----DQRE 63

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +      LL++IN +LDLS+IEAGR ++     S+  +V   + M+Q RAQ  N++
Sbjct: 64  SLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARAQAHNLQ 123

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404
           +   I+ ++   +  D   ++Q +LNL+ NA+KFT   G V V +               
Sbjct: 124 LLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNE-GSVTVRIFSQPSTPKTVDVEFE 182

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI++ ++  +   F Q   +      G GLGL I +  +   GG     S+  +
Sbjct: 183 VQDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWAESEENK 242

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490
           G      +P             E+ Q
Sbjct: 243 GSTFGFRVPFRVSAEENLTYKTENRQ 268


>gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 906

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I ++          +  AE    AKS FL++MSHE+RTPLN ILG SE++    +   +
Sbjct: 369 FIRDITQRNDTLR-AKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKNGLD--D 425

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  ++ +  I  S ++LL+++++ILD S+IEAG+  L     +L +++       +++A
Sbjct: 426 KKLLEKNLEGISFSAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKA 485

Query: 344 QEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           +EK +++   ID  +  +   D+  + Q+I NL+ NA+KFT   G++ + +         
Sbjct: 486 REKGLQLITTIDERIPDIIVGDQYRLNQIITNLIGNAIKFTKQ-GKITLELQLIEETTDK 544

Query: 403 IS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           ++    + D G GI + ++P +  SF Q      +   G GLGL I   ++   GG   +
Sbjct: 545 VTINFIVTDTGIGIPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFV 604

Query: 459 RSKLREGVEVIAIL 472
            S+  +G      L
Sbjct: 605 ESEPGKGSSFHFKL 618


>gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 738

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 31/377 (8%)

Query: 103 VYVWRIWLLVGQIA--IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
           +  W     V       G  + ++ +++         T         +     L    + 
Sbjct: 223 LTRWPHRDEVIGTVNRSGTAYDVIAVLKQDEGVVLRDTPR------FSTGKRELRVAAVR 276

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                     +VA     +         +AG+          +   L ++  +  +  AE
Sbjct: 277 KIDRYPLVLAIVATDDLFLAGWRRSAWLIAGVSLVGAMSLLIVLLILVRNLRQREADMAE 336

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + L              +  AE  NLAKS FLA+MSHE+RTP+N ILG ++++    M 
Sbjct: 337 MEQL--------------KLAAEAANLAKSSFLATMSHEIRTPMNGILGMAQLLL---MS 379

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +   EY+  I  SGQ LL+L+N+ILD+S++EAG+ EL  +  +   ++ E + +  
Sbjct: 380 GSAEDERHEYVRTILNSGQTLLSLLNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFF 439

Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TS 397
            +A+ K + I  +   P++    AD+  +RQ++ NLLSNAVKFT   G + +        
Sbjct: 440 AQAEAKGLSITAQWHGPAVQRYRADQIRLRQILTNLLSNAVKFTKE-GAIRIEAREIERE 498

Query: 398 GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                +   + D+G GIA  +   +   F Q   +      G GLGL I +S+    GG+
Sbjct: 499 DGWARLEFAVIDSGIGIAPEKRALLFKPFSQLDSSATRQYGGTGLGLSIVRSLAELMGGE 558

Query: 456 FLIRSKLREGVEVIAIL 472
             + S+  +G      +
Sbjct: 559 AGVESQPGQGARFWVRI 575


>gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 979

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 4/252 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +         ++ AE+ + AKS FL+SMSHELRTPLNAILGFS+++EL+   PL
Sbjct: 576 RDITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPL 635

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N +  + + +I ++G HLL LINEILDL++IE+G+  +S  ++ +  ++ E I +++  
Sbjct: 636 -NPSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPF 694

Query: 343 AQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +  I+I    ID S   V AD   ++Q++LNLLSNA+K+    G+V       + +  
Sbjct: 695 ADKHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKVNDKY- 753

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G G++  ++  +   F +    I ++ +G G+GL +A+ +     G+  + S+
Sbjct: 754 RFHVIDTGIGLSNSDLELIFKPFYRL-NRINNSIEGTGIGLAVAKQLTELMNGEIFVTSE 812

Query: 462 LREGVEVIAILP 473
              G      LP
Sbjct: 813 KGAGSHFWIELP 824


>gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 623

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 124/241 (51%), Gaps = 8/241 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    + +F++++SHELRTPL ++  +SE +    +   ++E   E++G I R    ++
Sbjct: 380 EKIERDRRQFVSNVSHELRTPLTSVRSYSEALADGAI--KDSELAVEFLGVIQRETDRMI 437

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357
            +I+++L+LSR+++ R E++   I    +V   +    +  Q ++       I +++  S
Sbjct: 438 RMISDLLNLSRMDSNRQEMNLELIDFQGLVNHILDRFDMMIQSEDYVNEEYHIQRELTKS 497

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD+  + QVI N+L+NA+K++  GG + V +  T+     +S++D G GI +  +
Sbjct: 498 PIWVEADQDRLTQVIDNILNNAIKYSPDGGTITVRL-MTTHNEAILSVQDQGLGIPQKAL 556

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V   F +   A    + G GLGL IA+ ++  H G+    S   +G      LP    
Sbjct: 557 GHVFDRFYRVDKARSRQQGGSGLGLAIAKEVVELHHGKIWANSIENKGSTFFISLPFEPD 616

Query: 478 L 478
           +
Sbjct: 617 M 617


>gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1170

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 777

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 7/383 (1%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
            + G  +  L W+ ++ +  G   PE              S+   +   +  A  L    
Sbjct: 250 YVGGARSEALGWSFISRLPAGFDHPEIRMTTLIVCGGFLASLVIGALLAMYGASRLLRPL 309

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
             V      + S   + +   G +       T I         +    +     L A + 
Sbjct: 310 ARVVKQAHEVASGRPVRLWPQGRIKEFNDLSTDIGQMASAILEREHELRELNSKLEARVV 369

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                    ++ AEE N AKS FLA+MSHE+RTPLNAI G + ++    +     +  + 
Sbjct: 370 KRTEELSRAKEVAEEANRAKSTFLANMSHEIRTPLNAIAGMAALMRRAGL----EQEQET 425

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  +G HLL +IN +LDLS+IEAG+  L E    L  +    I ML  RA EK++ 
Sbjct: 426 RLDKLEAAGGHLLEIINMVLDLSKIEAGKLTLQEDVFPLGSLFENVISMLHERALEKHLS 485

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIK 406
           +  ++      +  D   ++Q +LN  +NAVKFT  G       +             ++
Sbjct: 486 LSFELPDLPPLLCGDRIRLQQSLLNYATNAVKFTEQGSVFMTAALLEETEEDVLIRFEVR 545

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA      +  +F Q   +      G GLGL I   I A  GG+  + S++  G 
Sbjct: 546 DTGIGIAPEVQKRLFKAFEQADGSTTRQYGGTGLGLAITAKIAAAMGGETGLESEIGNGS 605

Query: 467 EVIAILPNTRVLNFIPEDNHEST 489
                    + +    E + E T
Sbjct: 606 TFWFTARLRKAILGSQEAHQEPT 628


>gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1170

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
 gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
          Length = 1068

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE  + AK  FL+ MSHE+RTPLNAILG   +         + +  +  +  +  S  
Sbjct: 550 EKAEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQHL---DDTKKVENCLKKLTLSSN 606

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358
           HLL LIN++LD+S+IE+G+ EL          +     +   +A+EK +E    +   + 
Sbjct: 607 HLLALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKGLEYKTVLTGEVD 666

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414
            ++  D   + Q++ NLLSNA+KFT  GG + + V            +  + D G GI E
Sbjct: 667 ETLVGDSLRLNQILTNLLSNALKFTPAGGSIQLRVSQKVQGSNTVRLHFEVTDTGCGIDE 726

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +  SF Q   ++ +   G GLGL I +      GG   + S+L EG      LP 
Sbjct: 727 QNYQKIFESFEQEDSSVTNKYGGTGLGLSIVKRFSELMGGSVSVSSRLGEGSTFAVELPF 786

Query: 475 TRVLNFIPEDNH 486
            + +   PE+N 
Sbjct: 787 QKTVQ--PENNT 796


>gi|163814660|ref|ZP_02206049.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
 gi|158450295|gb|EDP27290.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
          Length = 623

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 166/340 (48%), Gaps = 19/340 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             Y    + +  +++         +  +    ++ AL    +  +      LAG+  +A+
Sbjct: 150 FPYTYVVVTLVSAVAYSITRKEKRSAVIMTIALIPALICSVLQVIAGGSYILAGLTLSAI 209

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +           +++      K + +A LE +K   +E    A + N AK+ FL SMS
Sbjct: 210 FVY-----------MELCMEDIRKVEKLAMLEKSKRELEEALDMANKANSAKTVFLNSMS 258

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           H++RTP+NAI+GF++++        + +  ++YIG I  S  +LL+LIN +L+++RIE+G
Sbjct: 259 HDIRTPMNAIIGFTDLLGENLG---DEKKARDYIGKIKSSSDYLLSLINNVLEMARIESG 315

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           R +L E  IS+   +     + + + +EK+I+    ++   +++  D   ++++++N+++
Sbjct: 316 RSDLDERDISVEKSLDAVYWIFEAQMKEKHIDFIWDVNVKHNNIKCDVVKLKEILMNIIN 375

Query: 378 NAVKFTAIGGRVHVTVGW---TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NA K++  G  V V +            I  ++KD G G++E  +  +   F +   + +
Sbjct: 376 NAYKYSLPGDSVAVRIEEIPCDRDGYARIQTTVKDTGIGMSEEFLEHIFEDFTRAQTSTE 435

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           S + G GLG+ I + I+   GG   ++SK   G      L
Sbjct: 436 SGQFGTGLGMAIVKKIVDLMGGTIDVQSKQGVGTTFTVTL 475


>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297]
 gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
          Length = 1593

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 141/282 (50%), Gaps = 9/282 (3%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++  +  +     I E + ++        +A     AKS FLA+ SHE+RTPLNAI+G S
Sbjct: 818  LEDRTLVSAALRDITERKNSEEKLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLS 877

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             +++ E +     E     +  I  SGQ LLN+IN++LDLS+IEA   ++  + ++L ++
Sbjct: 878  HLLDHENL----TENQHLLVDKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLREL 933

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            + + + + +++A  K +E+   IDP +   V  D+  ++Q++ NL SNA+KFT+  G + 
Sbjct: 934  IEDTLNVHRMQADLKGLEVALNIDPKVPNWVETDKTRLKQILDNLFSNALKFTSE-GSIS 992

Query: 391  VT---VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +    V  T        + D G GI+E     +   F Q  ++      G GLGL I   
Sbjct: 993  LRCHLVEETDRATVRFEVIDTGIGISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILK 1052

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            ++    G+  + S+  +G      LP   + +   ++  ES 
Sbjct: 1053 LVYLMEGRLGLESEEGQGSRFWFELPFKTLSDNELDNLSESA 1094


>gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 569

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           K+ L   +E+        R+ +E  N AKS FLA MSHELRTPLN++LG  +V++   M 
Sbjct: 182 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 241

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                 +   +  +  S   LL +I++ILDLS+IE+G + LS   I++ D V   +   Q
Sbjct: 242 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 297

Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           L A  K + I   I+       W D   + QV+ NL+ NAVKFT   G++ + V      
Sbjct: 298 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 355

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GI + +I ++ T+F Q   +I     G GLGL I + ++    G   + 
Sbjct: 356 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 415

Query: 460 SKLREGVEVIAILPNT 475
           S+  +G   +  +P  
Sbjct: 416 SQFGKGSTFVVKIPVK 431


>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1142

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSR 251
                   L     ++     E ++    LE  KS  +E R +        E     KS 
Sbjct: 431 LLQVSEEELRVQQEELKQINTELEEKAFMLEEQKSTIEEARDQIQLKADELERSGRFKSE 490

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLN+IL  S ++  E  G   NE  + Y   I+ SG  LL LIN+ILDL
Sbjct: 491 FLANMSHELRTPLNSILILSRIL-GENKGARLNEEEQRYASVIYNSGNDLLTLINDILDL 549

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           +++EAG+ EL    IS   ++ E     Q  A+ K +E+  +   S    +  D   + Q
Sbjct: 550 AKVEAGKIELVHEHISTESLLVEVRNTFQKIAENKGLELAVEKTGSCPDMLLTDHTRLLQ 609

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NL+SNAVKFT+  GRV +T+   +    +  + D G GI   +  ++  +F Q   +
Sbjct: 610 ILRNLISNAVKFTSAPGRVSLTIS-EADGYLHFEVADTGIGIPLEKQASIFEAFQQADGS 668

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                 G GLGL I++ + +   G   +RS   EG      +P     +  P
Sbjct: 669 TSRKYGGTGLGLSISRELASLFNGSISLRSTPGEGSVFTLKIPYLTESDEQP 720


>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
 gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
          Length = 911

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E  
Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 280

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L   + E II+L   A EK +E+   ++  +   +  D 
Sbjct: 337 DVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQLVGDA 396

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + + V   + +     + I D G GI+E +   +  
Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTGIGISESQQAQLFQ 456

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGSTFRFHL 506


>gi|146297994|ref|YP_001192585.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152412|gb|ABQ03266.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 724

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 17/266 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                     + +AE+ + A+S FL+++SHELRTPLNAI G + ++  +       +   
Sbjct: 339 REKNKELILAKNKAEKASKARSEFLSTVSHELRTPLNAINGITHLLLED----NPKKAQL 394

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y+  +  SG +L   INEIL++++I++ + E+   + +L +++      L+  A     
Sbjct: 395 KYLESLKFSGNYLTTFINEILEINKIDSTKVEVENISFNLKELLFNIQSSLKELATANKN 454

Query: 349 EIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403
               +ID ++  +   D   + Q+ILNL++NA+KFT   G+V V              Y 
Sbjct: 455 YFNLEIDKAIPDILIGDPTKLSQIILNLINNALKFT-QNGQVSVIAKLFAEEDENATVYF 513

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI E ++ TV  SF QGSI +     G GLGL I + ++   GG+  ++S++ 
Sbjct: 514 EIVDTGIGIPEDKLQTVFESFSQGSIEVNRKYGGTGLGLTIVKKLIELLGGEIKLKSEVG 573

Query: 464 EGVEVIAIL-------PNTRVLNFIP 482
           +G      L       P   V    P
Sbjct: 574 KGSTFTFKLNFKINNEPLEAVTEEKP 599


>gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 589

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+  I G++E +    M   + E  ++++G I    + L  LI ++
Sbjct: 365 RRDFVANVSHELRTPVTVIKGYAEALIDGAM-ETDPERARKFVGIILSHSERLAALIGDL 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS++EAG   L ++ +    + +  + +LQ +A  K I I         SV AD   +
Sbjct: 424 LTLSQLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRL 483

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NLL NA+K+T  GG +  +          I +KD G GI   ++P +   F +  
Sbjct: 484 EQVLVNLLDNAIKYTPEGGAISFSAA-VKENMVRIGVKDTGVGIPPKDLPRIFERFYRVD 542

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A    E G GLGL I + I+  HGG   + S+  +G E    +
Sbjct: 543 TARSRDEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTI 586


>gi|109900591|ref|YP_663846.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109702872|gb|ABG42792.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1011

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 175/446 (39%), Gaps = 29/446 (6%)

Query: 46  FRVSPILPLFVLLVANIGTWF--TQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIKIGE 102
              +     +    A +   F          W     L   A +          ++    
Sbjct: 209 LYYALSTLFYTSSWAAVFGVFEYLHMFSAKDWLMAGFLLGSAFSAFFQIAFFRLNVSSKP 268

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS------- 155
                   L+  +       L   +         ++I  SA L+  L I  +S       
Sbjct: 269 A-----MYLLLVLGCLCLLFLPLAIYSQALGLIIVSIMTSAVLMTGLFIGIMSWIKGYRP 323

Query: 156 NFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLDISLAGMLATA----LSFFTYITYHLFK 209
                 A+     P ++   L+ + +  + +    L  +   A    L+F       L  
Sbjct: 324 ARYFTIAILCVIIPNIIGNLLNLRILTDISLDIYLLGFVGIAADTLILAFALAEKMRLVN 383

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAI 267
           S   +L  Q E    I    ++++     +      E N AK  FLA+MSHE+RTPL +I
Sbjct: 384 SRNALLKQQLEHKVKIRTQALSEANRKLAKSNHELVEANSAKDYFLANMSHEIRTPLTSI 443

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G+++ I    +G ++    +     I+++G HLL +IN+ILDLS+I+A + E       
Sbjct: 444 IGYADGIL---LGDIDKAEQERVTNIIYQNGAHLLRIINDILDLSKIDANKLEFDTQPCH 500

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L  ++ E   +   RA++K I      D  L   +  D   ++Q++ NL +NA+KFT   
Sbjct: 501 LFTLLGEIESVAGKRARDKGIGFHVNYDFPLPDKIITDAVRLKQILFNLTNNALKFTHS- 559

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + + V   +     I + D G GI++ ++  +   F Q    I     G GLGL IA+
Sbjct: 560 GHITLNVSI-ANTTLIIKVIDTGEGISQSDMHKLFHPFTQADSVINRQVGGTGLGLSIAK 618

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            +    GG     S+LR+G      +
Sbjct: 619 RLAQGLGGDISALSQLRKGSTFTVSI 644


>gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
 gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
          Length = 801

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 18/282 (6%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++++    + DD+  E E  +         AE+ N AK+ FL+ MSH++RTP+N I+G +
Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427

Query: 272 EV----IELETMGPLN---NETYKEY------IGDIHRSGQHLLNLINEILDLSRIEAGR 318
            V    ++ E  G  N   +E    Y      +  I  S   LL+LIN+ILD+S+IE+G+
Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            +++   ++L D +R   +M++ +A+E+       + P +    + D   + Q++LNLL 
Sbjct: 488 MKIANREMNLKDTIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547

Query: 378 NAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+K+T   G + + V         +  +  I D G G++E  +  +   F Q       
Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +G GLGL I++ ++    G     S+  +G      +P  
Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPGKGTVFTVKIPMK 649


>gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
          Length = 958

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 22/356 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +     +LI   +  +S          +   +        I      +++  G      
Sbjct: 344 VLGMLIVILIVWKVVYVSVLKRLAEYSSALSSIAQGQLNVDITVKGNDELAHMGQAIITA 403

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAE--LEVAKSLSD-------------ETRKRA 242
                    + +S  K      E  + + E   E    L D             + R++A
Sbjct: 404 RNTAQSLKVVAESEAKAKRELQEHKEHLEELVTERTHQLQDTNKRLNHEVLNHAKARRQA 463

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ + AK+ FLA+MSHE+RTP+N +LG + +++   +    N     ++  I+RSG  LL
Sbjct: 464 EQASRAKTAFLATMSHEIRTPMNGVLGTARLLKETGL----NSKQGHFVDVINRSGTTLL 519

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            ++N++LD S+IEAG  E+     +L D+V++   +L  RA+EKNIEI   I+  +S  +
Sbjct: 520 AILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEISTLIESDVSQFL 579

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + D   + QV+ NL+ NAVKFT  G   ++VT            + D G GI++ E  T+
Sbjct: 580 YGDVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQDGQVLFEVSDTGIGISQEEQETL 639

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +F Q S  + S   G GLGL I++ I+   GG   + S++ +G      +P ++
Sbjct: 640 FDAFTQASGGMSSK-GGTGLGLAISKRIVEAMGGFLQLESEVGQGSRFSFSVPLSQ 694


>gi|163852796|ref|YP_001640839.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664401|gb|ABY31768.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 1071

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 170/361 (47%), Gaps = 15/361 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +E          +       I   +      ML     +    V+V     A    H   
Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAATHPEHAET 536

Query: 187 ISLA--------GMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDE 237
           +  A         ++   +++   +     +   +  + Q    +  IA  +V  +   +
Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 596

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ AE  NLAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS
Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHL  LI+ +LD+SR+EAGR +   + I L D + + + M++L+A+   +         
Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713

Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L +V A DEK +RQ++LNLLSNA+KFT   G V + + +  G+    +I+D G GI E +
Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +GS+    A  G GLGL IA  +    GG+  + S++ EG      L    
Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831

Query: 477 V 477
           V
Sbjct: 832 V 832


>gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 980

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E +  +      R++A E    KS FLA+MSHE+RTPLNAI+GFS ++        +
Sbjct: 593 LITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTT----ED 648

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E+I  I  + Q LL LI++ILDLS+IEA   + +   + L  + R+    ++ R 
Sbjct: 649 EHEREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRL 708

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + N+ +      +   V  +   + QV++NLL NA KFT+  G +        G   Y 
Sbjct: 709 -QPNVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFTST-GSITFGYEIR-GEELYF 765

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            +KD G GI++ +   +   F +      +  QG GLGL I ++I+    G+  + S+  
Sbjct: 766 YVKDTGRGISQEDQNKIFERFTKVD----TFTQGTGLGLSICKNIIEKMKGRIGVESEGK 821

Query: 463 REGVEVIAILPNTRVLNFIPEDNHES 488
            +G      +P    +       HE+
Sbjct: 822 DKGSTFWFTIPYKPEIATQHNKRHEA 847


>gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 617

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 151/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI   +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
               +  +E R+ A   N AKS FLA MSHE+RTP+N I+G ++++    + P       
Sbjct: 189 RRLITRLEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDLTP----EQD 244

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  + RSG  LL +IN+ILD S+IEAG+  L+     L +IV +   +L   A  K +
Sbjct: 245 SYVSTMVRSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGL 304

Query: 349 EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            ++  + P L  +   D   +RQ+++N+  NAVKFT   G V +           I + D
Sbjct: 305 MLYSDVAPDLPEIMLGDAGRLRQILVNIAGNAVKFTLE-GHVALRASAGGPGQIVIRVHD 363

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI   +   V T+F Q       +  G GLGL +++ ++   GG   + S+  EG  
Sbjct: 364 SGVGIPSDQQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTR 423

Query: 468 VIAILPN 474
               LP 
Sbjct: 424 FDITLPL 430


>gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 456

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             M + +L + L  +    LS    I     K   + LS       L  + E   +   +
Sbjct: 160 HFMMVGILSVFLTIITIALLSRIITIPLIRMKQATEKLSKGDFSVHLQVKGEDELAELGK 219

Query: 238 T----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 +  E     ++ FLAS+SHELRTPL  + G++++     MG    E    Y+  
Sbjct: 220 AIQTLARDLEYLKKERNEFLASISHELRTPLTYVKGYADIARRSNMG---EEERNRYLSI 276

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+   +H+  L+ ++ +L++++   +++ +   +L    ++    +Q   Q K + +   
Sbjct: 277 IYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYY 336

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            D S+ +V  D+K   QV++NLL NA+K++  G  V + V         I + D G GI 
Sbjct: 337 CDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSIVSIDV-RKEKHHIVIIVSDEGRGIP 394

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++P +   F +   +      G GLGL I + I+  HGG     S+  +G  +I  LP
Sbjct: 395 KEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|16124976|ref|NP_419540.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
 gi|13421950|gb|AAK22708.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
          Length = 591

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 166/460 (36%), Gaps = 40/460 (8%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSP---ILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
                +   F   +         R  P   +        A I           +W L   
Sbjct: 20  PRTSAALPRFAEWLDQDVTSVTARSLPTLGVRLAICAATALIYALAVDLQGGLLWGLAVA 79

Query: 81  AVYAANLSLGK--KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
           +  AA        +          +       +     + + W  L ++      P    
Sbjct: 80  SAEAAVFICSSPQRADRKISHAQRLS-----YVAAVAWMNIVWWSLAIMLWRQDHPALRM 134

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
                     +   A +       + +      + L    +++       LA   A  + 
Sbjct: 135 AALCVVCAFLVHAQAFTARSKTLLLIVGGGSATLLLVLCGVLNDFPPSERLALCAAAIIL 194

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                                                +  + +AE  + AKS FLA MSH
Sbjct: 195 IIYTAKAAQTNG-------------------QQGRALELAKSQAEAASQAKSEFLALMSH 235

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN +LG S+ ++LE + P      +E +  +  SG+ LL L+N++LD+++IEAG+
Sbjct: 236 ELRTPLNGMLGLSQALKLEPLEPGE----REQVELLEESGRTLLALLNDVLDMAKIEAGK 291

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            +++ +   L  +    + + Q +A+EK  EI  +IDP+    +  D   +RQ + NL+S
Sbjct: 292 LDIAPTQEDLSRLAERVVRINQAQAREKGTEITLEIDPATPRALLFDPLRVRQCLGNLVS 351

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NAVKFT   G++ V V   +G         I + D G G+    +  + T F Q    I 
Sbjct: 352 NAVKFTPA-GQIRVRVTCEAGDQPDRMLAKIIVSDTGVGMGPAVLARIFTPFEQADPTIA 410

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I + +    GG   +RS   +G       
Sbjct: 411 RRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGSTFTLTF 450


>gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 609

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++ +  +  F+A++SHELRTPL  I  ++E +    +     ET  +++  + +    + 
Sbjct: 371 QKLDQMRKDFVANVSHELRTPLTTIKTYTETLISGAIDE--KETALDFLSVMEKETDRMT 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSV 361
            L++++L+LS+I+  + +L+   + +  ++ + I    ++A+ K+ +I    + +    +
Sbjct: 429 TLVHDLLELSKIDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSYNKNKEYLI 488

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QV  N+LSNA+K+T   G++ + +  ++ +   I +KD G G+++ ++  + 
Sbjct: 489 EGDPARIGQVFHNILSNAIKYTEDNGQIKINLS-SNDQQVVIKVKDTGIGMSKKDLERIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL IA+ ++  HGG   + S L  G  VI   
Sbjct: 548 ERFYRADKARSRKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTVIXTF 598


>gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 740

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 138/317 (43%), Gaps = 13/317 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                       S           ++  G+              L  S   + S   E  
Sbjct: 272 ALPGVCQGTFIRSLVIAPVGREAPVAALGIYWATGLAPDPEAVRLLYSLADLASVVMENL 331

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  EL+       E +  AE+ N AKS FLA+MSHE+RTP+N I+G +E+     +   
Sbjct: 332 RLYDELKTRAEELGEQKAIAEKANRAKSEFLANMSHEIRTPMNGIMGMTEL----ALLSE 387

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  + Y+     S  HLL++IN+ILDLS+IEAG+  L      L+  +      L + 
Sbjct: 388 IPDQTRSYLQMAKSSALHLLSIINDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPLAMT 447

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A++  + +   IDP++ + +  D+   +Q++ N++ NAVKFT   G+V V V      G 
Sbjct: 448 ARKNGVALTCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRK-GQVEVGVRPADSAGG 506

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++D+G GI  G +  +  SF Q + +      G GLGLPI++  +   GG
Sbjct: 507 DAGRSRLLFWVRDSGIGIPAGRLEAIFESFAQATSSAHIEFGGTGLGLPISKKFVEMMGG 566

Query: 455 QFLIRSKLREGVEVIAI 471
              + S+   G      
Sbjct: 567 SIWVESEEGRGSTFSFT 583


>gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 1236

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 12/273 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           V            I E     +   + R  AE+ N AKS FLA+MSHE+RTP+N ++G  
Sbjct: 528 VGEERHFTGVMRDIREHVRIMNDLQQARIEAEQANKAKSAFLAAMSHEIRTPMNGVIGMI 587

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +V+   ++         E    I  S   LL++I +ILD S+IEAG+ E+ +  +SL +I
Sbjct: 588 DVLRQTSLTGY----QMEMANLIRDSAYSLLSIIEDILDFSKIEAGKLEIEKIPMSLANI 643

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGG 387
           V     ML   A  K +E+   IDP +   +  D   +RQ+++N+++NA+KF+      G
Sbjct: 644 VENACGMLAHVALSKKVELTLFIDPEIPENMLGDPLRLRQILVNIINNAIKFSSKQEKQG 703

Query: 388 RVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           +V V V  T            I DNG G+ +     +  SF QG  +      G GLGL 
Sbjct: 704 KVSVRVLLTESNPDQVVVTFQITDNGIGMNKETQEKLFKSFSQGDPSTTRRFGGTGLGLA 763

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I+  +      +  ++S  + G   I  +P   
Sbjct: 764 ISHHLAELMDAEITVQSAPQHGSTFIIQMPFKP 796


>gi|320581795|gb|EFW96014.1| Histidine kinase osmosensor [Pichia angusta DL-1]
          Length = 1043

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 140/316 (44%), Gaps = 23/316 (7%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIAELEVA 231
                  +      +A  L T +  F  IT      +      +    E D L  ++   
Sbjct: 400 VDGLWKEITTNVNIMAANLTTQVRAFAQITAAATDGDFTRFITVEASGEMDALKTKINQM 459

Query: 232 KSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                E        R+ AE  N AKS FLA+ SHE+RTP+N I+G +++     +     
Sbjct: 460 VLNLRESIQRNTAAREAAELANRAKSEFLANTSHEIRTPMNGIIGMTQLTLETQLTQY-- 517

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  +H     LL +I++ILD+S+IEA R  + E   SL   V   +  L ++A 
Sbjct: 518 --QREMLSIVHNLANSLLTIIDDILDISKIEANRMTIEEIDFSLRGTVFGALKTLAVKAI 575

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396
           EK +++  K+D S    +  D   +RQVILNL  NA+KFT+  G+V V+V  T       
Sbjct: 576 EKQLDLIYKVDNSFPDNLVGDSFRLRQVILNLTGNAIKFTSR-GKVTVSVKKTSRVINNT 634

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   + D G GI + ++  +  +F Q   +      G GLGL I++ ++   GG+ 
Sbjct: 635 DKLLLEFCVSDTGIGIEKDKLGVIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEI 694

Query: 457 LIRSKLREGVEVIAIL 472
            + S   EG      +
Sbjct: 695 WVTSNYGEGSNFYFTI 710


>gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 591

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL  I+GF + ++ +     + E  + ++G I    + L  L
Sbjct: 359 LEKMRSEFVANVSHELKTPLTTIIGFVDTLKRKPG--EDKEKRQRFLGIISEEVERLKRL 416

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I +IL LS +E      +   +++   + + + ML   A  KNI I   I+ + +     
Sbjct: 417 IEDILLLSHLENQSSSNNLEEVNIYKELDDILYMLTPSANRKNIGINLIIEKNFTLYVKS 476

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +   +Q ++NL+ NA+K+T   G ++V+          I +KDNG GI + +I  V   F
Sbjct: 477 KDWFKQAVMNLIDNAIKYTQPEGHINVSAYIKENNALII-VKDNGVGIPKEDISRVFERF 535

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   +   +E G GLGL I + I++   G   + S+L +G E I  LP  +
Sbjct: 536 YRVDKSRSRSEGGTGLGLAIVKHIVSELDGSIYLNSELNKGSEFIIQLPLNK 587


>gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 632

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 11/233 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+RAEE +  KS FLA+MSHE+RTPLNAI+GFS+++        + E   E++  I  + 
Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LI++ILDL++IE+G  +   + +S+ +++ E +   +++  + N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +++D   + QVI N L+NA+K+T+ G  +        G     S+ D G G+++    
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   F +G     + +QG GLGL I ++I+   GG+  + S+L +G      
Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW]
 gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW]
          Length = 878

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 13/314 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-------E 229
              +S H +       LAT ++        L ++   +   + E +   AE+        
Sbjct: 310 WLRVSEHPISTGGVLSLATDITAQKMREEELRRALEDVDEARREAELQAAEMVALAEELA 369

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A++ +DE R  +E  N AKS F+A MSHE+RTPLNA+LGF++++    +        +E
Sbjct: 370 AARTRADEARAESEAANRAKSDFVAVMSHEVRTPLNALLGFADLLLQTPLTA----EQRE 425

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++     +G+ LL +++++LD S++EAGR E+      L  + R    +++  A+E+ + 
Sbjct: 426 WVTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGLA 485

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +   +DP L  V   D K +RQV+LNLL+NAVKFT   G V + V   +       + D 
Sbjct: 486 LRVAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTER-GHVALAVFPVADGRVRFEVLDT 544

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA  +   +   F Q   A      G GLGL I + ++   GG   + S    G   
Sbjct: 545 GIGIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESAPGRGSLF 604

Query: 469 IAILPNTRVLNFIP 482
              LP     +  P
Sbjct: 605 WFELPLPADESSRP 618


>gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
 gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
          Length = 1283

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 10/254 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              +++L+ A+    + ++ AE+ +L KS+FL+ MSHE+RTP+NA++G S ++  E     
Sbjct: 1018 RDVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE----D 1073

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  E +  +  S ++L+ LIN+ILD ++I++G+ EL E  + L ++V   +     +
Sbjct: 1074 PRADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVHSHSFQ 1133

Query: 343  AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGR 399
            A EK++ +   IDP L   +  D   + Q+I NLLSNA+KFT   G V + +        
Sbjct: 1134 ANEKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDK-GEVTIKLSHEILEKG 1192

Query: 400  --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                     D G G+ E +  ++  +F Q S +      G GLGL I + ++  +GG   
Sbjct: 1193 ICRVNFECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLYGGDIE 1252

Query: 458  IRSKLREGVEVIAI 471
            + S +  G      
Sbjct: 1253 VNSNISGGSTFKFY 1266


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 151/383 (39%), Gaps = 9/383 (2%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                        + +  L           +  L E     P+ L +   + +    +++
Sbjct: 199 AAQQLSNNLRDLPFTLTYLFEPDGSAHLAGVTGLSEGHPAAPDTLPV-DGSGVWPVEALA 257

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
              + ++                     ++ +  +   G     L         L  +  
Sbjct: 258 RGESVLVALDGAPFTALPAGDWPEPPAQALVLPLLRQGGTPYGFLVAGLNRYRALDDAYH 317

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGF 270
             L   A    L A +  A+S   + R+  E  E + AK+ F +++SHE RTPL  I+G 
Sbjct: 318 GFLELTA--GHLAAGIASARSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGP 375

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E +  +  G   +   +E +  IHR+G  L  L+N +LD SRIEAGR +     + L  
Sbjct: 376 VEELRTQLAGA--DARVREELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQ 433

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +  +   + +    +  ++      P    V+ D     +VILNLLSNA+KFT   G + 
Sbjct: 434 VTADLASVFRSAVDKAGLDFRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFD-GSIG 492

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           VTV         I++ D G G++  E+P +   F +   A   + +G G+GL + + ++ 
Sbjct: 493 VTVRARDEH-AVITVTDTGIGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVG 551

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
            HGG     S   EG      LP
Sbjct: 552 LHGGTITADSTEGEGTRFTIRLP 574


>gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 1138

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 6/255 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            EK    A L+   +      + AE  +  KS FLA+MSHE+RTP+ AI+GFS+++  + 
Sbjct: 718 TEKCAAEARLKAVNAELMLAHQDAERASKIKSEFLANMSHEIRTPMTAIVGFSDLLLEQG 777

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              ++ E  ++ +G I R+G HLL LIN+ILDLS++E+G++++    +   +++R+   +
Sbjct: 778 ---MSEEEKRKSVGTIQRNGNHLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHEL 834

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396
           L  RA  +   +  ++  +L   + +D   ++Q + NL+ NA+KFT   G V V      
Sbjct: 835 LNERAITQENRLQIELKGALPQTIHSDSTRLKQALFNLVGNAIKFT-QNGVVKVIAECDF 893

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +       + D+G G++  ++  +   F Q   +      G GLGL I + I    GG  
Sbjct: 894 AHEQMIFQVIDSGIGMSPEQLEQIFQPFRQADASTTRKFGGTGLGLTITKQIAELLGGDV 953

Query: 457 LIRSKLREGVEVIAI 471
            + S+   G      
Sbjct: 954 RVESQSGVGSSFTLR 968


>gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 893

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAK-SLSDETR--KRAEEENLAKSRFLASMSHE 259
           +     +     +      + L A+ E A  + S+  +  K  E+ +  KS+FLA+MSHE
Sbjct: 448 LQAQTEELQTHSVEMHLLNERLGAQKEAALIAASELEKYAKELEKSSKYKSQFLANMSHE 507

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S+++     G L  E    Y   IH SG  LLNLIN+ILDLS++EAG+ 
Sbjct: 508 LRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHNSGSELLNLINDILDLSKVEAGKM 566

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           ++    ++L ++           A+ KN+E   ++   L   +++D   + Q++ NLLSN
Sbjct: 567 QIEMDLVNLTELPELMQGYFSKSAESKNLEFDIEMSDDLPDMMYSDGMRLHQILRNLLSN 626

Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           A+KFT   G V + V             SG     S++D G GIA   +  +  +F QG 
Sbjct: 627 AIKFT-ESGSVKLRVKKMNSIVTSDFIISGDVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                   G GLGL I+  +    GG   + S+   G   I  LP 
Sbjct: 686 ETTARKFGGTGLGLSISLHLAKLLGGYITVESEEGIGSTFILYLPL 731


>gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
 gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
          Length = 427

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 126/239 (52%), Gaps = 8/239 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R RAE  N+ K  F+A++SHEL+TPL +I GF+E ++      ++ ET   ++  I   
Sbjct: 196 ERVRAE--NMRK-DFVANVSHELKTPLTSISGFAETLK--LNENIDKETRNRFLTIIDGE 250

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI +IL LS IE  + E  + AI+L  + R    ML + A+ KNI +  + D S
Sbjct: 251 ANRLRRLIEDILTLSFIENDKKE-EKEAINLYSVYRRVEDMLMISAKTKNIALACEADES 309

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           + S+ A+   ++Q+ILNL+ NA+K+T   G V+V + +T      I + D G GI + + 
Sbjct: 310 I-SLQANADYVKQIILNLVDNAIKYTPENGAVNVKI-FTEKENAVIKVSDTGMGIPKEDQ 367

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F +   A      G GLGL I + I+ N GG   + S+L +G      +P  R
Sbjct: 368 SRIFERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEKGSTFTVKIPIKR 426


>gi|153869369|ref|ZP_01998997.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074110|gb|EDN71002.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 483

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 32/284 (11%)

Query: 220 EKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           E   L  +L+ A        +++++ RK AE  N AK+ FLA MSHELRTPLNAILG+S 
Sbjct: 194 ENLQLYLDLKEANQQTSYMLAIAEQARKMAEAANQAKTSFLARMSHELRTPLNAILGYSG 253

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +I+ +       +   + +  I  +G+ LL+ I+ ILD+S+IE+ + EL+ +  ++ ++V
Sbjct: 254 MIQEDASDLGYQDILPD-LDKIQVAGKQLLDTISNILDISKIESDKLELNLTEFAVSNLV 312

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E +  +Q   +    +   ++   L  ++AD   + Q++LN+L+NA KFT   G++ + 
Sbjct: 313 NEVVTTIQPLIKINGNQFECQMSDDLGRLYADYHKVTQILLNILNNANKFTHA-GKITLD 371

Query: 393 VGWTS-----------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V                               +  I D G GI   ++  +  +F Q   
Sbjct: 372 VTRKRMSKIIAETENCELALESEVLDTFTDWVFFQINDTGIGIPSDKLNLIFEAFAQVDT 431

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +      G GLGL I ++     GG+  + S + EG      LP
Sbjct: 432 STTRQFGGTGLGLAICENFCKAMGGKISLCSTIDEGSTFTIQLP 475


>gi|149192095|ref|ZP_01870319.1| sensor histidine kinase [Vibrio shilonii AK1]
 gi|148834081|gb|EDL51094.1| sensor histidine kinase [Vibrio shilonii AK1]
          Length = 734

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 9/256 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI          D+ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +
Sbjct: 324 EIRYLIDTFNEKTIYLDQERVKAQASTKAKTAFLATLSHEIRTPMNGVLGTAQILLKTDL 383

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   ++ +  ++ SG H+++L+NEILD S+IE G  EL      L  I+     + 
Sbjct: 384 NL----EQRKLLKTLYDSGDHMMSLLNEILDYSKIEQGHLELENRPFPLSSIIGSMHSVY 439

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                EK +      +   +  +  D+  +RQ++ NLL+NAVKFT+  G V V +     
Sbjct: 440 HTLCNEKGLRFSVFSEVDETRWYSGDKARLRQILFNLLNNAVKFTSQ-GMVEVYLSEEVN 498

Query: 399 RGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            G     I +KD G GI+      V   F Q   +      G GLGL I Q I    GG 
Sbjct: 499 DGVTALVIRVKDTGIGISPDAQARVFKPFEQAESSTTRRFGGTGLGLAIVQEITHCMGGN 558

Query: 456 FLIRSKLREGVEVIAI 471
             + S+   G E    
Sbjct: 559 ITLTSQEGMGSEFTVR 574


>gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 1206

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 99/364 (27%), Positives = 159/364 (43%), Gaps = 10/364 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           + P         +     +  AL++           +       +     Q  +S  +L 
Sbjct: 626 MAPQLDAGLADYLLLMGLVTPALALVLGIAHRQALRLLGDQAAALGPTLAQGFVSSFLLL 685

Query: 187 ISLAGMLATALSFF----TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
              AG+                    +  + +           A L+ A+  +D  R  A
Sbjct: 686 WIAAGVGVWWGVLAHRSRAAAQEESNRQTLALQREIESHARTDAALQAAREEADRARGHA 745

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKSR++ ++SHELRTPLN+ILG+++++E +   P      ++ +  I R G HLL
Sbjct: 746 EAANRAKSRYITTISHELRTPLNSILGYAQLLEEDEAMP---PHRRQAVAVIRRGGDHLL 802

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           +LI   LD++RIE+G+  L    +   D + E   M +L+A  + +     +D  L   V
Sbjct: 803 SLIEGTLDIARIESGKLALDVRPMRFADGLAEIARMFELQAAGRGLAFRFAVDGRLPAVV 862

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            ADEK +RQ+++NLL NA+KFT   G+V + V           I+D GPG+   E+  V 
Sbjct: 863 RADEKRLRQILINLLGNAIKFTQA-GQVTLRVAHQRE-MARFEIEDTGPGMTADELARVF 920

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F +GS A   +    GLGL IA+ +    GG+  + S+   G      L    V    
Sbjct: 921 EPFERGSAASGQSVGSTGLGLTIARMLCELMGGEMTVASEPGRGTTFRIRLFVPEVAVAA 980

Query: 482 PEDN 485
           PE +
Sbjct: 981 PEVD 984


>gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 352

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSC-----QAEKDDLIAELEVAKSLSDETRKR 241
           ++ A ++   L+    +   + + + + L         E + LI ++       ++  + 
Sbjct: 57  VAAAYLIMPRLALARELLRQIRRRSFENLELAHVPQGDELNSLIWQVYRTGRTLEKEIEE 116

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            +     +  FL ++SHEL+TP+ +I GF+E +      P +  T + ++  I R+   L
Sbjct: 117 LKRMENYRREFLGNVSHELKTPIFSIRGFTETLLE--ADPGDEATRRAFLEKILRNADRL 174

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            NL+ ++ ++SR+E G  +L      L  +VRE +  ++  A  + + +   +  +L  V
Sbjct: 175 ANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSLRCCVPENLPHV 234

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D + +RQV++NL+ NA+K+   GG V V +         +++ DNG GIA   IP + 
Sbjct: 235 LGDRERLRQVLINLVDNAIKYNNPGGFVEVRL-QEQDGSVRVAVVDNGIGIAPQHIPRLT 293

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   +    + G GLGL I + I+  H  +  I S   +G      LP  
Sbjct: 294 ERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFRLPVA 347


>gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
 gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
          Length = 339

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  F++++SHEL+TP+  + G  E +E E     + +T ++++    +    + +LIN
Sbjct: 114 QAKKDFVSNVSHELKTPIAVMKGIVETLEQE----EDVQTIRKFLNMAKKRIDQMDSLIN 169

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+++E+   +L+ +   L  IV      L+  ++EKNI++   I      +  D+K
Sbjct: 170 DLLILAKLESKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLINDIPEGFL-IDVDQK 228

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
               ++ NL+ NA+K+    G V V+          I++ D G GI +   P +   F +
Sbjct: 229 KFDILLKNLIENAIKYNKPEGSVTVSAER-KDGEILINVTDTGIGIPKESQPLIFERFYR 287

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +      G GLGL I + I   H G+  ++S+   G      +P  R
Sbjct: 288 VDKSRSRNVGGTGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIPERR 337


>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
 gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
          Length = 929

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I + ++A+      +++AE+ N+AKS+FLA+MSHELRTPLN ++G   ++   ++   
Sbjct: 267 EDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNLLAATSL--- 323

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N      +     S + L  L+N++LDLS+IE+G+ EL      L +++ E    +  R
Sbjct: 324 -NARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAEVARGMAGR 382

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A+EK +E+        S V   D   +RQ++ NL+ NA+KFT   G + V +        
Sbjct: 383 AEEKGLELLCPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEK-GSITVDMTVIKKTMP 441

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 SI D G GI+E +   +   F Q   +    + G GLGL I + ++   GG+  
Sbjct: 442 EATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGRIG 501

Query: 458 IRSKLREGVEVIAIL 472
           + S L +G      +
Sbjct: 502 VSSTLGQGSTFWFEI 516


>gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1167

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 131/251 (52%), Gaps = 8/251 (3%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                   L+   ++ AE+ + AKSRFLA++ HE+RTP+  +LG SE++    + P+    
Sbjct: 778  RRRQQWQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPV---- 833

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y G I ++G HLL L+N+ LDL+RIEAGR EL      L  ++ +  +++Q  A+++
Sbjct: 834  QRSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQR 893

Query: 347  NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYIS 404
             +E  +  DP    SV  DE  +RQ++LNLL NA+KFT   G V + V     G G    
Sbjct: 894  RLEFQRGNDPQGPISVSGDEMRVRQILLNLLGNAIKFTER-GHVGLAVRLEDNGGGVCFE 952

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+GPGI   +   +   F Q       S   G GLGL I Q +    GG+  + S   
Sbjct: 953  VYDSGPGINAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPG 1012

Query: 464  EGVEVIAILPN 474
            +G      LP 
Sbjct: 1013 KGARFRVRLPL 1023


>gi|160937422|ref|ZP_02084783.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439491|gb|EDP17241.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1114

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 10/307 (3%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L       +S       + +  +   +      D+   E E  +S        A   + 
Sbjct: 544 MLGDGRYHWVSMQIIHVDNPYSGDKLAILISRRIDEQRYEEEQKRSALQSALDNARAASE 603

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKS+FL++MSH++RTP+NAI+G + +         + E   E +  I  S +HLL+LIN+
Sbjct: 604 AKSQFLSNMSHDIRTPMNAIVGMTAIASTRL---DDRERVMECLKKISLSSKHLLSLIND 660

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEK 366
           +LD+S+IE+G+  + E   +L ++V E   +++ +A+ K++E+   +       V  D  
Sbjct: 661 VLDMSKIESGKLSIREEPFNLAELVTESAELVRPQAEAKHLEMDVHLKGLKNEEVVGDSL 720

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVL 421
            +RQ+ +N+LSNA K+T  GG VHV V    G             D G G++   +  + 
Sbjct: 721 RIRQIYINILSNAAKYTPEGGSVHVEVRQEQGAGRGYGRYVFRCADTGIGMSSEFMSKLF 780

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F +   +  S   G GLG+ I ++++    G   + S+ REG      LP  +  +  
Sbjct: 781 QPFERAQDSTNSRVTGTGLGMAITKNLIDLMNGDIRVESRPREGSVFTVALPL-QFQDAA 839

Query: 482 PEDNHES 488
           PE   E 
Sbjct: 840 PEAVPEE 846


>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
 gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1]
          Length = 889

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 8/251 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +   ++AE+ N AKS FL+ MSHE+RTP+N I+G   +I ++ +G  ++   ++ I
Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ S +HLL LIN++LD+S+IE+GR E+          +     ++  +A++K +   
Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
                 +   ++ D   + Q+++NLLSNA+KFT  GG + + +               + 
Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKFEVS 519

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E     +   F Q    I     G GLGL I++       G+  + S++ +G 
Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579

Query: 467 EVIAILPNTRV 477
                +P  RV
Sbjct: 580 TFTLTMPFGRV 590


>gi|225028824|ref|ZP_03718016.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
 gi|224953845|gb|EEG35054.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
          Length = 639

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 7/249 (2%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +    + R+ A E N AKS FLA+MSHE+RTP+N +LG +E+I  E+     +   
Sbjct: 186 YKKQQVFLMQAREEAMEANRAKSTFLANMSHEIRTPINVMLGMNEMILRES----ESREV 241

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y   + ++G +LL+LIN ILD++RIE+ + ++ E   SL  +V+E  ++   +A+ KN
Sbjct: 242 VQYAKSVEKAGNYLLSLINNILDITRIESKKLDIIEEKFSLRQLVQEVCLIGAKQAEAKN 301

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +E    ++ +L   +  D   ++QVILNL++NAVK+T   G+V + V     +    S+K
Sbjct: 302 LEFVVDVEETLPKYLEGDALHIKQVILNLINNAVKYTKK-GKVFLKVCQEEKQ-ISFSVK 359

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI + ++  +   F +  I      +G GLGL IA+ +    GG     S   +G 
Sbjct: 360 DTGIGIKKEDMEALFDMFMRADIKRHRNIEGSGLGLTIAKELCEQMGGHIQAESIYGKGS 419

Query: 467 EVIAILPNT 475
                 P  
Sbjct: 420 NFTVYFPLK 428


>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 882

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E + DI  S   LL L+N+ILDLS+IE+GR ELS     + ++V + +I+ 
Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D ++   V  D+  ++Q+I NL+SNAVKFT   G + V V +   
Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 528

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKD+G GI   ++ T+   F Q    +     G GLGL I + +++  G
Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+ +  S    G      +
Sbjct: 589 GKLVATSTKGVGTCFGFSI 607


>gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 672

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E + +AE  N AKS FL +MSH++RTP+NAI+G++E+           +    
Sbjct: 279 KQEEELREAKLKAECANKAKSSFLYNMSHDIRTPMNAIIGYAELASRHL---QETDKLGR 335

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+ +I   G+ LL+++  +LDL+RIE  + E+  +  ++ +    C+IM Q +A+ KN  
Sbjct: 336 YLEEIQICGKELLSMLGNVLDLARIENNKVEIECTVSNVHECFENCVIMFQQQAESKNQT 395

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYIS 404
           +          V+ D   + +V LN++SNA+K+T  GGR+       +          IS
Sbjct: 396 LSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGRISCNVVQKSCEKEDWCNMIIS 455

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I DNG G++E     +  +F +      S  +G G+G+ I + ++    G   ++SK  +
Sbjct: 456 ITDNGIGMSEEFQKRIFETFERERNTTSSHIEGSGIGMGITKKLVELMDGTIEVKSKQGK 515

Query: 465 GVEVIAILPNTRV 477
           G      +P  + 
Sbjct: 516 GSTFTVTIPCRKA 528


>gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 921

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 16/364 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                E+L     AT+   + ++   + + P             + +   + +H+     
Sbjct: 317 FRVHREHLPPILRATIEQGVIVAGPIDQLFPPGTRAHTLLASNGVQSMLGLGLHIAPHWQ 376

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLA 248
             + A               + +++L    E     I + E+A +L       AE    A
Sbjct: 377 GALAAGD----NQADRIWDDATLRLLRTGLEMIKAFIQQWEMANALRAR-NDAAEAATRA 431

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLNA++G + +++   +    ++  + ++  I   G+ LL +I++I
Sbjct: 432 KSAFLANMSHEIRTPLNAVIGMAALLQESRL----DQEQRIFVDTIRTGGEALLAVISDI 487

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD SRIE+G+ EL  +A  L   ++  + ++   A  KN+ +   I P +   V  D   
Sbjct: 488 LDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCHIAPDVPQIVQGDAAR 547

Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTS 423
           +RQ++LNLL NAVKFT+ G     V +              ++D G G++  ++  V   
Sbjct: 548 LRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDTGIGMSAEQLERVFAP 607

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IP 482
           F Q   +      G GLGL I+Q ++   GG     S L  G      LP T      +P
Sbjct: 608 FVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSSLGHGSIFSLNLPFTHAHPADLP 667

Query: 483 EDNH 486
           + + 
Sbjct: 668 QPSP 671



 Score = 39.1 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 89/326 (27%), Gaps = 50/326 (15%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
              +    +     ++   +L+   +  W  Q          TL V+A  L+        
Sbjct: 21  RKQIVALLMRLFIVVIIPMMLVNGLMSIWLGQWQFVLYHVSSTLLVFAVVLAHRTPYQLR 80

Query: 97  DIKIGEVYVWRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
            + +   ++      V      G+   +L L               S   +  + +  + 
Sbjct: 81  GVLLVSYFLLTTLGGVYVFGLFGIAPGILFLTTVLAVLLLGQRAAYSVIAIGVVGVLIIL 140

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                        P+  A       +   + ++   +L    S    I   L ++    L
Sbjct: 141 TSFRLGIRPYPLAPLDAA-------TTWPMILNNLILLGGVSSLLVIIIGSLLRAYQTSL 193

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                  + +A+LE   +  +++     E N       A+   ++R     I   +E   
Sbjct: 194 EA---TRNALAQLEQTNARLEQSLITNSELNQ------ANA--DMR-----IRQATEAAL 237

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E +          Y   + R  + LL              G    +   +     V++ 
Sbjct: 238 SEQL---------RYAETLARCSRILLV------------QGADAPAWQPV-----VQQA 271

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSV 361
           +  L       ++ +     P  + V
Sbjct: 272 VTTLYSALNCSHLALHIFPRPDAAEV 297


>gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 1172

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
 gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
          Length = 441

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ + +    I     + I+    +   +S    +  H+   +       
Sbjct: 132 LIYDMGLILAPLALVMILLTIWIGRKIIIA----ITKPISQMERVANHMATGDFSERITV 187

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    ++       E E+  +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 188 SSEDEIGRLGKAFNKMA----HSLETEDAKRKEFLANVSHELRTPLSYIKGYSEAILDGV 243

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E   +++  IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 244 AKG---EQQSKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLET 300

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I + +DP +  V  DE  M+QV+ NLL NA+++T   G + + +     
Sbjct: 301 YELKWTEKQLRISKDLDPDII-VMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLE-KKD 358

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + I+D G GI    +  +   F +   A      G GLGL I + I+  H G++ +
Sbjct: 359 NSCELRIEDTGIGIDSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQV 418

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 419 ESEKGKGTTVIITL 432


>gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 777

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +       +RA E +  KS F+A+MSHELRTP+N ILG ++++ L  +   
Sbjct: 378 RDITNRKRLEQNLSFALERALEASRLKSEFIATMSHELRTPMNGILGMADILLLTEL--- 434

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E+ K+    I + GQ+L+++I++ILD S+IE   ++L    + +  IV E +   + +
Sbjct: 435 -SESQKDSAKLIKKCGQNLMSIISDILDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPK 493

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+ K I +  +ID   S + + D K +RQV+ NL+ NA+KFT   G V V   +      
Sbjct: 494 AESKGISLRCEIDEHCSDIFYGDSKRIRQVLTNLVGNAIKFTEE-GYVRVRADFLGEGRM 552

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI E     V  +F Q   +      G GLGL I + ++   GG     S+
Sbjct: 553 RIEVEDTGVGIDEVFQSKVFQAFTQEDGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQ 612

Query: 462 LREGVEVIAIL 472
           +  G      +
Sbjct: 613 VGVGSRFWFEI 623


>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 906

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 214 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 273

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 274 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 330

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 331 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 390

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 391 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 449

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487
           G GLGL I++ ++    GQ             +G              F  ++ HE
Sbjct: 450 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 499


>gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
          Length = 660

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             +    +L   L    Y  Y        +    A+  +   +LE+++      ++RAEE
Sbjct: 370 FILFTFLVLIGGLFISLYYYYRTKILKNHLEKTTAQLREDKKKLELSEIALRHAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS ++          +  KEY   I  + + LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV---EATDEQKEYADIIQTNSELLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+         L++  +  I + + + + ++I++  ++      ++ D
Sbjct: 487 ISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR-KNRTRDIDVRLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTS 423
              ++QVI+NLL+NA+KFT  GG + +             S+ D G GI E +   V   
Sbjct: 546 PLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGSGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +         QG GLGL I +  +   GG   I    + G   +   P  +  + 
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHPIKKRESE 658


>gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 762

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 29/315 (9%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                  +    + +A M+   ++ F  I Y L K N ++LS          E   A+  
Sbjct: 304 VAGLSWVLMQNAVLMATMIIAVIAIFFSIYYQLVKRNTRLLS---------DEKNRAERA 354

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           S+E R+     +LAKS FL+ MSHE+RTP+N I+G + +         + E  +  +  I
Sbjct: 355 SEEARR----ASLAKSEFLSRMSHEIRTPMNGIMGMTAIALEN---AHDEEKARACLEKI 407

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + +HL+ LIN+ILD+S+IE+G+ ++          V     +   +A E+ I    + 
Sbjct: 408 DVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRYKTEE 467

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQY 402
             +L S+   D   + Q++ NL+ NA KFT   G V + +                    
Sbjct: 468 VGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDAIWLR 527

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI       + +SF QG  +      G GLGL I +      GG+  + S++
Sbjct: 528 FSVTDTGCGIKPENRERIFSSFEQGDESSCRR-GGTGLGLAITKRFTEMMGGRISLSSEV 586

Query: 463 REGVEVIAILPNTRV 477
            +G      +P  R 
Sbjct: 587 GKGSTFTVDVPFGRA 601


>gi|300788622|ref|YP_003768913.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299798136|gb|ADJ48511.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1546

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 111/503 (22%), Positives = 193/503 (38%), Gaps = 38/503 (7%)

Query: 10   KDVGLLISPTGDHLGLEYPSKMDFD-REIITLHVESLFRVSPILPLFVLLVANIGTWFTQ 68
             D+   I+    +L     +  + D  +     +    +    L     L+ +      +
Sbjct: 873  ADLKDNINQMIANLKETTRTNREQDWLKTNLAQLSGRMQGHRDLASVAALILSELAPLVR 932

Query: 69   NPIFPMWSL-----------ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117
                  +                A   A    G +    +  IG+  V +  +LV     
Sbjct: 933  AQQGAFFLARDDDRDGTVLECIAAYGLAQSRAGLRFAMGESLIGQAAVDQRTVLVHNAPP 992

Query: 118  GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
                    L          L +     +L  L +++++ F   +   L      + ++  
Sbjct: 993  EYALISSGLGSAAPVNLIVLPVLFQGEVLGVLELASVNEFSTVHQDLLEQLRHTIGVNVN 1052

Query: 178  AIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKILSCQAEKDDLIAELEVA 231
             I+S    +  L      A                L +SN ++    A       ++EV 
Sbjct: 1053 TILSNSRTEALLTESQRLAQELRARSEQLQAQQGELRRSNTELAEKAALLAQQNRDIEVK 1112

Query: 232  KSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             S  ++ R+  EE        +  K+ F+A+MSHELRTPLN+ L  ++++     G L  
Sbjct: 1113 NSEIEQARQELEERAGQLTVASQYKTEFMANMSHELRTPLNSALILAKLLSENPEGNLT- 1171

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E   ++   I+ +G  L  LIN+ILDL+++EAGR ++  S I+L ++V     + +    
Sbjct: 1172 EKQIQFAKTIYAAGSDLQQLINDILDLAKVEAGRLDMQMSDITLPELVDYVESLCRPLTA 1231

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-----------RVHVT 392
            +K +E    IDP +  SV  DE  ++Q++ NLLSNA KFT  GG            V   
Sbjct: 1232 DKGLEFAVHIDPPVPGSVHTDEHRLQQILRNLLSNAAKFTDEGGVRLHIRSADPAEVEQE 1291

Query: 393  VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                +      +++D G GI E ++  +  +F Q          G GLGL I+Q +    
Sbjct: 1292 ALRNAPGIIAFAVEDTGIGIPEEKLAVIFEAFRQADGTTSRKYGGTGLGLNISQQLTELL 1351

Query: 453  GGQFLIRSKLREGVEVIAILPNT 475
            GG+  + S+   G      LP  
Sbjct: 1352 GGELRVVSEPGVGSTFTLYLPVA 1374


>gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
 gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
          Length = 654

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L  A S   E  ++AE+ N  KS FLA+MSHE+RTPLNAI+G S ++        N 
Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNML----PHVENR 466

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY   I  +   LL LIN+ILDLS+IEAG ++   + I +   + E    +QLR +
Sbjct: 467 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 526

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+           +++ D+  + Q++ N + NA+KFT + G + +          Y  
Sbjct: 527 HNNVTFTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 585

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G++  +   V   F +      S  QG GLGL I  +I+   GG+  + SK  +
Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 642 GATFWFTLPYRQ 653


>gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 633

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 182/452 (40%), Gaps = 47/452 (10%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
             L+A           +  W +           L    +   +   ++Y +     V  +
Sbjct: 34  YFLIAFFFAGLYFATYYGTWDIAIGVGGTL--LLAYYSVKLLLPSSDLYQY-----VLSV 86

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI---------ALSISALSNFMLPYAVFLS 166
            +G+          G +   +     SA L+           L    L +  L Y   + 
Sbjct: 87  CLGIFMAQFIFQMHGLFEMHFFAFIGSAILITYQKWKLQIPILVFVVLHHLGLNYLQSIG 146

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI- 225
           +  V             V+ I L G++      + Y       +   +     E+     
Sbjct: 147 YESVYFTPLDYLQFETMVIHIILTGVIYFVCGLWAYHLNKYNVAQHGMFLHLEERKKYEQ 206

Query: 226 --------------------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                                E E A+  +++ ++ AE    AKS FLA+MSHE+RTP+N
Sbjct: 207 TLEELNEELLRSSHEAVLAWEEAEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMN 266

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G + +++   +    +    +Y+  I+ S + LL++IN++LD S+IE+G  +L E  
Sbjct: 267 GVMGMTSLLKNTPL----SAEQADYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERT 322

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             L   + + I +   ++    + +  ++DP+L   +  D+  +RQV++NLL+NA+KFT 
Sbjct: 323 FELKKCILDVIDLFAEKSLMSGVALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTT 382

Query: 385 IGGRVHVTVG--WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           + G V + VG   T      I   + D G GI + +I  +  +F Q          G GL
Sbjct: 383 V-GHVFLKVGLLRTVENRITIGFEVHDTGIGIPKNKISHLFKAFSQLDSTSHRKFGGSGL 441

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I++ +++   G   ++SK  +G      +
Sbjct: 442 GLIISEKLVSLMNGSIEVKSKEGKGSIFSFTI 473


>gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
 gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
          Length = 657

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 3/333 (0%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L + ++ +      L      +     ++       ++   ++  + ML +  S  + I
Sbjct: 311 VLFVLVAAAFFICAALLGRKLTAMITRPISDLQDISRTITKGELPSSDMLRSRSSVPSEI 370

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                   V       +   L  ++    +    T       N  KS+FLA++SHELRTP
Sbjct: 371 VSLADDMYVMARKLTDKNQRLEEKVSARTAQLANTVDELRAANRHKSQFLANISHELRTP 430

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+I+GF+ +++    G L N T   Y   I  SG HLL+LIN+IL L +++    +L  
Sbjct: 431 LNSIIGFASLLQENVAGDL-NATQTRYAEIIIESGGHLLDLINDILQLVKLDTSVDKLKL 489

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381
           S +S+I+ +R  + +++  A E+   +   +   L   + + DE+ + Q++LNLLSNAVK
Sbjct: 490 SRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDGYTAYWDEQKVHQILLNLLSNAVK 549

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           F+  GGR+ V          +I + DNG GI+      V  +F Q   +     +G GLG
Sbjct: 550 FSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKERVFLAFEQADNSYTRIYKGAGLG 609

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I + ++  H G+  +      G++   +LP 
Sbjct: 610 LAITKDLVEMHSGRIWLEDAPGGGLDACVVLPL 642


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
          Length = 1356

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   L +  +++   ++       EL  A+       +  E  +  KS FLA+MSHE
Sbjct: 631 LRSVNDKLGERAMELEEQKSAIRRKNKELLRAQEQLKLKAQELESASRYKSEFLANMSHE 690

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S+++     G L+     E    I+ SG  LL LINEILDLS++EAG+ 
Sbjct: 691 LRTPLNSILILSQLLSHNKEGNLS-PKQTEAASAINSSGADLLRLINEILDLSKVEAGKV 749

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           EL    + L  ++ +   + +  A EK +    + DP+L   +  D   ++QV+ NLLSN
Sbjct: 750 ELHLEEMPLTSMISDLQRVFKGVAVEKGVAFLVEQDPALPETMLTDTHRLQQVLRNLLSN 809

Query: 379 AVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           A KFT   G V +++              ++     I++ D G GI E +  T+  +F Q
Sbjct: 810 AFKFT-DHGSVTLSISRPGPEVDLPEGIPSAEEAICIAVTDMGIGIPEDKQGTIFEAFRQ 868

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
              +      G GLGL I++ +    GG+  +RS+  +G     ILP     +   ++
Sbjct: 869 ADGSTSRKYGGTGLGLSISRELTKLLGGEIRLRSQEGKGSTFSLILPLRHHADAPTDE 926


>gi|167772720|ref|ZP_02444773.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
 gi|167665198|gb|EDS09328.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
          Length = 1108

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 8/275 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           KI+    + D    E E  K    +    A + N AKS F++ MSH++RTP+NAI+G + 
Sbjct: 557 KIMLYMRDIDQTRREDERNKRALQDALVLARDANRAKSDFISRMSHDIRTPMNAIIGMTA 616

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +         N     + +  I  S + LL+LIN+ILD+S+IE+G+  +++   +   ++
Sbjct: 617 IAAANLG---NEAKISDCLQKIGVSAKFLLSLINDILDMSKIESGKVVIAQCEFNFHRMI 673

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +    +   +A +K++     ++ +   +   DE  + Q+++NLLSNA+KFT  GGRV +
Sbjct: 674 QGISSVFGQQAAQKHLAFNVYLEENFPLTCTGDELRINQILMNLLSNAIKFTPEGGRVSL 733

Query: 392 TVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +     +         + D G GI+      +   F Q S       +G GLG+ I Q+
Sbjct: 734 RIERKKAKEHITLVRFEVADTGVGISPEFQKRIFDPFEQESAGSGRVFEGTGLGMTITQN 793

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           ++A   G+  + S+  +G   I  LP        P
Sbjct: 794 LVALMDGRISLESEPGKGSRFIVELPLELGEAVEP 828


>gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1125

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 16/253 (6%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++        + E  +  +  I  SG+ 
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N++LD+S+IEAG+ EL     +L  ++ + + +++  A +  + +  +IDP L +
Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410
            V  D   +RQV+ NLL+NAVKFT   G V +T  +                  I D G 
Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I   ++   GG   + S+   G     
Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817

Query: 471 I--LPNTRVLNFI 481
              LP        
Sbjct: 818 TLALPRATTPPAA 830


>gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 568

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 137/269 (50%), Gaps = 8/269 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           F+   +             EL+  +          E+ N  K+ FL++MSHE+RTP+ AI
Sbjct: 126 FRLQDQQTEYLERLKLTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAI 185

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G+SEV++   +         + I  I R+G HLL +IN+ILD+S+IE G+ EL   A  
Sbjct: 186 IGYSEVLKESVI----QAEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACF 241

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
            + IV+E I + + +A +K + +   I  S+   + +D   ++QV+ NL+SNAVKFT  G
Sbjct: 242 PLQIVQEVIALHRPKAVQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNG 301

Query: 387 G-RVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             R+ +     S   R    ++ D G GI++  +  +   F Q   ++     G GLGL 
Sbjct: 302 FVRIEIRTFNRSNFERLLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLT 361

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++Q ++   GG+  ++S + +G      L
Sbjct: 362 LSQKLVQLLGGKLSVQSTVNQGSIFSVTL 390


>gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
 gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
          Length = 1471

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 20/290 (6%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
               L+       L   +       +E +++AE  N AKS+FL+ ++HELR+PLN ILGF+
Sbjct: 965  QAELALDQLNQSLEERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSPLNIILGFT 1024

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++E        +   ++ +  I  +GQ LL LINE+LDL ++EA R EL+     L  +
Sbjct: 1025 QLLER---CDNLDSQQQQQVNLIFNNGQQLLKLINELLDLGKVEANRMELNVEWFDLYCL 1081

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            + E   M +L  Q K +E    +D  +   +  D+  +RQV++NL++NA+KFT + G++ 
Sbjct: 1082 MDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFTDV-GQIC 1140

Query: 391  VTV---------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            + V                    ++D G GI   E+  +   F QG     S  QG GLG
Sbjct: 1141 LRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQ-QGTGLG 1199

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHE 487
            L I +  +   GG+  + S L  G  +   +    P  R    +P+   E
Sbjct: 1200 LAICRYFVEMMGGEIGVNSTLGAGTRIHFSIVSNSPVKRSA-TLPQLRQE 1248


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 135/249 (54%), Gaps = 13/249 (5%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+ L+++     ++   AK +FLA+MSHE+RTP+N ++G + +++   +    N   ++
Sbjct: 677 TARKLTEQA---LQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQESGL----NPEQQQ 729

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I  SG  LL++IN+ILD S++EAGR EL ++   +  I+ E I ++  +AQ K + 
Sbjct: 730 YVEVIRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLA 789

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----IS 404
           + + ++ +    +  D   +RQ++LNLL NA+KFT   G V +      G+ +       
Sbjct: 790 LERHLELAQPCYLKGDVTRLRQILLNLLVNAIKFT-ESGSVTLQARVEPGQDRRSMLLCQ 848

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E ++ T+   F Q   +I     G GLGL I++ +     G+  + S   +
Sbjct: 849 VRDTGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQ 908

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 909 GTTFRLSIP 917


>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
 gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 535

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 6/265 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            K+L+   E      +          ++K AEE    KSRFLA+MSHE+RTPLNAI GF 
Sbjct: 129 EKVLADAVEIILKRRQYRQMHEDLARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFI 188

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++E        +ET  +Y+  +  S + LL +IN+ILD+S+IE+G   +     +  + 
Sbjct: 189 KLLEEN----EKDETKLKYLKIVENSSESLLQIINDILDISKIESGNLMIEPYNFNPYED 244

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     + Q RA EKNI    + + ++  + + D   ++Q+  NLLSNA+KFT  G  V 
Sbjct: 245 LIMIAELFQTRAAEKNIIFQIRYNNNMPKILFGDALRIKQIFTNLLSNAIKFTPEGSVVK 304

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             + + +G+   I +KD G GI+E +   +   F Q   +      G GLGL I+  +  
Sbjct: 305 CIIWYKNGQ-LNIRVKDYGIGISEKKQKAIFEPFMQADSSTVRNYGGTGLGLSISLELTR 363

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
             GG   ++S+  +G      +P  
Sbjct: 364 MLGGTLTLKSEKEKGSIFTLSIPLE 388


>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
 gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
          Length = 1053

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 8/318 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L            + L  +      + +        T       I   +    +    
Sbjct: 206 LTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A     +   + A+   +E + +AE+    KS FLA+MSHE+RTP+NAI+G S +   
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P      ++Y+  IH S   LL +IN+ILD S+IEAG+  +     SL +++    
Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
           ++   +A +K +E+   +   +   +  D   + QV++NL++NAVKFT  G   V V VG
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       + D G G+ E +   +  +F Q   +      G GLGL I++ ++   
Sbjct: 442 ERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  + S+   G     
Sbjct: 502 EGEISVTSQPDMGSCFTF 519


>gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1501

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 6/341 (1%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             ++  A            +     +A  +   +    +  S A    +      +     
Sbjct: 1031 TVAEFAALIHPEDRERVAAAIQRALAGESSYELEFRAVQPSGAIRWLSTTGGVIFDQQGQ 1090

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                +   +   ++  + AE E         R+ AE  N  K  FLA +SHELR+PLN I
Sbjct: 1091 PVRMLGATNDITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHELRSPLNPI 1150

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG++++++     P   +  ++ +  I R+ +    LI ++LD+SRI  G+  L+ S ++
Sbjct: 1151 LGWTKLLQTRPFDP---QRTQQALQTIERNAKLQTQLIEDLLDISRILQGKMVLNTSPVN 1207

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            LI  +   +  ++L A+ K IE+   + P++  V+ D   ++Q++ NLL+NAVKFT  GG
Sbjct: 1208 LITTIEAALDTVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAVKFTPAGG 1267

Query: 388  RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +V + +         I ++D G GI+   +P V   F Q          G+GLGL I + 
Sbjct: 1268 KVLIRLEQV-DSFAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGLGLAIVRY 1326

Query: 448  IMANHGGQFLIRSK-LREGVEVIAILPN-TRVLNFIPEDNH 486
            +   HGG   + S+   +G      LP     L   P +  
Sbjct: 1327 LTEQHGGTVEVESRGEDQGASFTVHLPLMASDLTPDPAEQP 1367


>gi|77362202|ref|YP_341776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1585

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 90/274 (32%), Positives = 131/274 (47%), Gaps = 12/274 (4%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELR 261
                +S    L   A         +  K  ++E +     A+E  +AKS+FLA+MSHE+R
Sbjct: 1022 RQWTQSEETYLRSLATLVGSTLVSQRRKQTAEELKIALVLAKEAGVAKSQFLATMSHEIR 1081

Query: 262  TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            TP+N +LG  E+I+LE +           +     S   LL +IN+ILD S+ EAG+ EL
Sbjct: 1082 TPMNGVLGMLELIQLEQLPKPIETK----VAIAKTSAHSLLGVINDILDFSKAEAGKIEL 1137

Query: 322  SESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAV 380
                 +  D++ E      L AQ K IEI    +    S +  D   +RQV+ NLLSNAV
Sbjct: 1138 ESINFNARDLIGEVAAAQALTAQNKGIEIILDLVALEPSQLSGDPGRIRQVLTNLLSNAV 1197

Query: 381  KFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            KFT   G V V+        Q    +S+KD+G GI++ +   +   F Q   +      G
Sbjct: 1198 KFTNE-GEVVVSASIERIEAQLMLQVSVKDSGIGISKEKQQQLFAPFMQVDASTTREYGG 1256

Query: 438  VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             GLGL I++ +    GG   I+S   +G E I  
Sbjct: 1257 TGLGLAISKQLCELMGGAITIKSNAGQGSEFIVT 1290


>gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1015

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I   +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 628 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 687

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L   +++    L+L+
Sbjct: 688 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 743

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +  ++++       +  V  ++  + Q+I+NL++NA+KFT+ G    +  G+   G+  
Sbjct: 744 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGS---IRFGYEHRGKEL 800

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI + +  ++   F +      S  QG GLGL I ++++ + GG   + S+
Sbjct: 801 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 856

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 857 EGKGSTFWFSLP 868


>gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 862

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +     +
Sbjct: 616 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 673

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++IG I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 674 EEITQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 733

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
                + +  +     +  D   ++QV+ NL++NA KFT+ G    +T G+         
Sbjct: 734 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 790

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S+
Sbjct: 791 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 846

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 847 VGKGTRFTVRLP 858


>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 1136

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 161/370 (43%), Gaps = 5/370 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           WT++   +  T       +  +  L+ A++++ L+     ++  L+     ++ +  A+ 
Sbjct: 310 WTVVAEADSDTAFATSRQLRNALFLIGAVAVAGLAVLSFLFSNALTRPIRRISEAASAVA 369

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +           +  +     + ++    L    +K+   AEL+       E   
Sbjct: 370 TGSLNEALPEYDHPVEYARLSRAVNQMRRALRDQLDMIRDKN---AELQENLRQIGEKNA 426

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           + EE +  K RFLA+ SHELRTPLN I+G  E +E   MG +        +  I  S + 
Sbjct: 427 KLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDML-PAQASQLRLITFSARR 485

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD+ RI  GR  L    + +   +R  + +LQ   Q    +    +   L +
Sbjct: 486 LSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTFQVDPAKFHLDLPEDLPA 545

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD     Q++ NLLSNAVK+   G  VH+T    +     ++I+D+GPGIA   +  +
Sbjct: 546 VTADPVRFEQILFNLLSNAVKYGG-GSEVHITAERRASGQMALAIRDHGPGIAADSMERI 604

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                Q          G GLGL IA+ +     G   + S   EG E   +LP + +   
Sbjct: 605 FHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSSTPGEGSEFRVLLPQSDLPAI 664

Query: 481 IPEDNHESTQ 490
            P +    TQ
Sbjct: 665 APLEEWLPTQ 674


>gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 1302

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 7/271 (2%)

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +  L  E +   +     R+ AE  N  K  FLA +SHELR+PLN ILG+S++++   + 
Sbjct: 908  QKQLELERDRLLAQEQAAREVAERANRIKDEFLAVLSHELRSPLNPILGWSQLLQ---VR 964

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             L+     E +  I R+ +    LI+++LD+++I  G+  L+ ++++L   +   I  ++
Sbjct: 965  KLDEAQTAEALHTIERNAKLQTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVK 1024

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              A+ K+I +  ++ P++  V  DE  ++Q++ NLLSN +KFT  GG+V + +    G  
Sbjct: 1025 QTAKSKSIALESQL-PNIGQVSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHLKRV-GSY 1082

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I +KD G GI+   +P +  SF Q   +I     G+GLGL I   ++  HGG     S
Sbjct: 1083 AEILVKDTGKGISPDFLPHIFESFRQEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAES 1142

Query: 461  K-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
                 G      LP        P+ + E  Q
Sbjct: 1143 PGEGLGATFTVQLPL-LDAESEPQLSRELPQ 1172


>gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1127

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 7/343 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++ LS+ AL   ++               +   + S  V   ++  ++A   S++  +  
Sbjct: 571 VVTLSLCALIATVMGMVYLQETALSASTDAFDMLRSAFVKVFAVLLLIAAVCSWWVVLGS 630

Query: 206 HLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +      + Q +     I   +   +     ++ AE  N AK+R++A M+HELRTPL
Sbjct: 631 ESRRMAQDESNRQNQLLSREIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPL 690

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+ILG+S+++             +E +  I RSG+HLL L++ +LDL+RIEAGR  L  +
Sbjct: 691 NSILGYSQILLKSEALANTP---REAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPT 747

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            + L D +   + M++ +A+ K+++        +   V AD K +RQ+I+NLLSNAV FT
Sbjct: 748 PLPLPDFLDGLVNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFT 807

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V + V           + D G GIA  +   +   F +G+   +  E G GLGL 
Sbjct: 808 DT-GSVTLHVDCRRE-VIRFDVVDTGIGIAPQDQQRIFLPFERGAAGRRRGEPGTGLGLT 865

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I   + A  GG   ++S+  +G      L    + +  P  + 
Sbjct: 866 ITGLLTALMGGDLSLQSEQGKGSTFSVRLYLREIDDPGPLADP 908


>gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 590

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 4/238 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F++S+SHELRTPL +I G++E +    M   + E    ++  I +  + 
Sbjct: 356 RLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLEGAM--HDPEHATAFLQIILKESEQ 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N++LDLSRIE+G+ E   + + L  ++ + + ML    ++K I + +     +  
Sbjct: 414 LTALVNDVLDLSRIESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPE 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V AD   +  V+ NLL NAVK+     GRV ++V  T      + I+DNG GIA  ++  
Sbjct: 474 VTADAGYLEIVVRNLLDNAVKYVDDRNGRVRISVFRTGMD-VRMEIEDNGIGIAPADLDR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +   F +   A      G GLGL I + I+  H G   +RS++ +G      LP   V
Sbjct: 533 IFERFYRVDKARSRTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLPAVSV 590


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 1098

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 111/472 (23%), Positives = 193/472 (40%), Gaps = 36/472 (7%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
           D  I    +E          L ++ + N+  +F+      ++ ++ +A            
Sbjct: 184 DAFIEKSQLEYALLGIFFGILSIMALYNLFLFFSLRHWSYLFYVLFIASNIFIHLSFTGT 243

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT-------------------WTP 134
               I   + + W    +V  + I   +  L                          +  
Sbjct: 244 AYQYIWPEQSW-WNNRAIVLFMLISNIFGYLFAKSFLEMRKVIPGLNSIFNYLIFCNFVI 302

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFL-----SFFPVVVALSTQAIMSMHVLDISL 189
            +L  Y  +  L  + IS+    +L     +      + P    L    I  +  +   L
Sbjct: 303 IFLLFYSYSLALNLVVISSGVTVLLMIWAGISCYRKGYQPAKYFLLAWHISFIGTIISLL 362

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---LIAELEVAKSLSDETRKRAEE-- 244
           A      + F T   + +  S   +L   A  D    +  E E A+    ++  RA E  
Sbjct: 363 ADAGFLPIYFVTKYAWQITASIEFLLFSFALADKINMMKKEKEQAEQEVIKSNLRALENL 422

Query: 245 --ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
              +  K  FLA  SHELRTPL+ ++G +E +     G +  ++ K+++  I  SG+ L 
Sbjct: 423 KKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKMT-QSMKKHLSMIISSGKRLS 481

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LIN+ILD S ++     L    + L ++V   IIM Q    EKNI I  +ID ++  V 
Sbjct: 482 HLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSLLNEKNIRIINEIDTNIRPVL 541

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  ++QV  NL+ NA+K+T   G V ++     G+   + I D+G GI+  +I T+  
Sbjct: 542 GDENRLQQVFFNLIGNAIKYTER-GTVVISAE-EDGKMLQVHITDSGIGISADQIDTIFD 599

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +F +G       + G GLGL I + ++  HGG   + S+  +G     ++P 
Sbjct: 600 AFNRGGN-NSEEQSGTGLGLNITKKLIEAHGGNISVVSQEGKGSTFSFLIPL 650



 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 16/292 (5%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL----- 247
            L         I   + + +          D+L  ++        E      + N      
Sbjct: 809  LIELSLAVRKIKEQMRELDDVNQRLLQINDELEGKVRERTVALKEVNDELLKANEDLIKL 868

Query: 248  --AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              A++  L+++SHE  TP+  +  + + +    +   +      Y+  +      L  LI
Sbjct: 869  QNARTHMLSNISHEFGTPVTFLQSYIQSVRAGIIEANDA----HYLKSVENKVNMLNRLI 924

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF----QKIDPSLSSV 361
             ++ D+S++E+G   L     +L + + +     +     + I +        +     +
Sbjct: 925  EDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRKITLHKPVFTGNEEQDIRI 984

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
              D   M QV  N++ NA+K T  GG + + V     +   I IKDNG GI E ++P V 
Sbjct: 985  DIDNDRMDQVFTNIIYNAIKHTNEGGDIWINVVVKDRQEVMIEIKDNGHGIKESDLPFVF 1044

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +G   I     G GLGL I++ I+ +H G+  ++S    G      LP
Sbjct: 1045 ERFFKGEKVINGKI-GTGLGLAISKEIIHHHNGEISVKSTEGNGAIFCISLP 1095


>gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 612

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +    +G  + E    ++       + ++
Sbjct: 372 EKIDAERREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPRFLSVTQNETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +    + I  +   I   ++  +E+++E  + +      V 
Sbjct: 430 RLVNDLLQLSKFDSKDYQFNREWTNFIRFISLVIDRFEMT-KEQHVEFIRNLPQREIYVE 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG +  TV     +     S+KD G GI + ++  + 
Sbjct: 489 IDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDEGIGIPKKDMDKIF 548

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G  V   LP
Sbjct: 549 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600


>gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
 gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
          Length = 896

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +    +LE+ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E+       +  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA  +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S L EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 878

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 5/254 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+ AE  N  K  FLA +SHELRTPLN ILG+S+++        + +T    +  I R+
Sbjct: 498 ARQEAEIANQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKF---DQQTTNRALETIERN 554

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            +    LI ++LD+SRI  G+  L+   ++L+ +V   +  ++L AQ K+I+I    D S
Sbjct: 555 AKLQTQLIEDLLDVSRILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDAS 614

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V  D   ++QV+ NLLSNAVKFT  GGRV + +   +     I + D G GI    +
Sbjct: 615 LGQVMGDPNRLQQVVWNLLSNAVKFTPTGGRVGIRL-MEASNQIQIQVSDTGKGINPDFL 673

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTR 476
           P V   F Q          G+GLGL I + ++  HGG+    S     G      +P   
Sbjct: 674 PYVFDYFRQADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQAESPGDGLGATFTVEVPLLV 733

Query: 477 VLNFIPEDNHESTQ 490
               +  + +ES  
Sbjct: 734 RSEQVRREENESLD 747


>gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 1170

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I       ++ D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1364

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 144/323 (44%), Gaps = 13/323 (4%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              +  ++      + +        L     ++  L   + +++       DLI E ++ 
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS-TLRDDHDQVIGYLGVAVDLI-EQKLQ 626

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +        ++ +
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----PGAAQDMV 682

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++     K +E+ 
Sbjct: 683 AKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMI 742

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISI 405
            +  P     +  D   + QV++NL+ NA+KFT   G V ++V               S+
Sbjct: 743 VEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNKFKLLFSV 801

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  + S    G
Sbjct: 802 RDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRG 861

Query: 466 VEVIAILPNTRVLNFIPEDNHES 488
            E   ++   +      + +  S
Sbjct: 862 SEFYFVITLEKSAPPQEQRDLPS 884


>gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 614

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +++    +   + +      + +  +  +  E   A       R   E  +  K  FLA
Sbjct: 185 GSVTSVLSLVLDVTERIQAEKALRQSELMVTEERAQALERERAARIELERASRMKDEFLA 244

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +SHELR+PLN ILG+S ++    + P   E  ++ +  I R+ Q    LI ++LD+SRI
Sbjct: 245 IVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERNAQAQTQLIEDLLDISRI 301

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
             G   L      LI +++  +  ++  A  K+I+I  +++  +  V AD + ++QVI N
Sbjct: 302 IRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWN 361

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT  GGRV + +         I + D G GI+   +P V   F Q        
Sbjct: 362 LLSNAVKFTPEGGRVEICLEQVETN-VQIQVIDTGTGISPEFLPYVFDRFRQADATTTRN 420

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI-PED 484
           + G+GLGL I ++++  H G+  + S    +G      LP     + + PE+
Sbjct: 421 QGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLPLLATYSTLTPEE 472


>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 878

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 152/398 (38%), Gaps = 38/398 (9%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL--SNFMLPYAVFLSFF 168
            +  I           V   T +  Y       TL  AL++++           + +S  
Sbjct: 310 AMMAILSLPMTASSLFVLRKTGSTHYPGHMLCFTLCFALTMNSYYTGGHQSTLRLLMSTL 369

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNVK--------- 213
           P+V AL      S+    + L  +L   ++      Y         +S++          
Sbjct: 370 PIVSALVIGRRASVQWSFVVLIILLLFFIANLLGYEYVDGIPTITIRSHMNFIIDVTLVL 429

Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                 L  Q   D+   E +         +  A E   A+  FLA+MSHE+RTPLN ++
Sbjct: 430 ITMSFTLCYQYFIDEAHRETKTKNLQLTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLI 489

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++      P      K+    +   G  LL L+N+ILDLS++EA +  +      +
Sbjct: 490 GMATLLRDSLSLP---PEEKQMAKSVKSCGDILLRLVNDILDLSKLEANQMVVENIGFRV 546

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG 387
            D+  E   +L  +A+E N+ +  ++  ++  V + D   + QV++NL  NA+KFT   G
Sbjct: 547 KDMAHEICQVLAAQAKEHNLRLQYEVADNVPPVLFGDTGRILQVLMNLTGNAIKFTPE-G 605

Query: 388 RVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            V + +                      ++D G G+       +  +F Q   +      
Sbjct: 606 VVKIIIDLIEDDAEKITFKSDEYNVCFRVQDTGIGVPPESHQKIFEAFVQADPSDSRKYG 665

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +   ++    G+  + +    G     ILP 
Sbjct: 666 GSGLGLYLCAKLVKLMRGEIGVYNNQHGGSTFWFILPL 703


>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
          Length = 906

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 214 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 273

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 274 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 330

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 331 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 390

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 391 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 449

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487
           G GLGL I++ ++    GQ             +G              F  ++ HE
Sbjct: 450 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 499


>gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
 gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
          Length = 1459

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 139/287 (48%), Gaps = 8/287 (2%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            + I     E+ +   E E  + +  +    AE+ + AKS FL+ MSHE+RTP+NA++G +
Sbjct: 915  LDITKLVLEQQEKEREAERNRQIIKDALTAAEQASRAKSDFLSRMSHEIRTPMNAVIGMT 974

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             +         N +   + +G I  S ++LL+LIN+ILD+SRIE+G+  +          
Sbjct: 975  TIAAASL---DNRDKLTDCLGKIGLSSRYLLSLINDILDMSRIESGKVSIINEEFDFRSF 1031

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            V     ++  +A+ KNI     I+  +      D   + QV++N+LSNA+KFT     VH
Sbjct: 1032 VEGISSLIYPQAKNKNIVFDLNIEGVVDERYRGDPLRLNQVLINILSNALKFTPEWRSVH 1091

Query: 391  VTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            +++  T            ++D G G+ +G +  +   F QG  +I  +  G GLGL I+ 
Sbjct: 1092 LSIRETRRVRDRAYLQFIVRDTGIGMEKGLLERIFEPFEQGGASISHSYGGSGLGLAISS 1151

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            ++++   G   + S    G E +  LP   V +  P+ +      + 
Sbjct: 1152 NLISLMNGHISVSSTPGVGSEFVVELPLLTVPDNTPKQDVSLEDIRV 1198


>gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 456

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             M + +L + L  +    LS    I     K   + LS       L  + E   +   +
Sbjct: 160 HFMMVGILSVFLTIITIALLSRIITIPLIRMKQATEKLSKGDFSVHLQVKGEDELAELGK 219

Query: 238 T----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 +  E     ++ FLAS+SHELRTPL  + G++++     MG    E    Y+  
Sbjct: 220 AIQTLARDLEYLKKERNEFLASISHELRTPLTYVKGYADIARRPNMG---EEERNRYLSI 276

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+   +H+  L+ ++ +L++++   +++ +   +L    ++    +Q   Q K + +   
Sbjct: 277 IYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYY 336

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            D S+ +V  D+K   QV++NLL NA+K++  G  V + V         I + D G GI 
Sbjct: 337 CDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSIVSIDV-RKEKHHIVIIVSDEGRGIP 394

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++P +   F +   +      G GLGL I + I+  HGG     S+  +G  +I  LP
Sbjct: 395 KEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1053

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I   +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 666 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 725

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L   +++    L+L+
Sbjct: 726 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 781

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +  ++++       +  V  ++  + Q+I+NL++NA+KFT+ G    +  G+   G+  
Sbjct: 782 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 838

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI + +  ++   F +      S  QG GLGL I ++++ + GG   + S+
Sbjct: 839 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 894

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 895 EGKGSTFWFSLP 906


>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
 gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
          Length = 729

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 19/297 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            I        +++L  +A   D+      I     +K +    + RAE  + AKS FLA+
Sbjct: 163 RIVRLWNGRAIRLLDQRAPSGDMVSLALDITAEVRSKEVLRRAKHRAEAASRAKSAFLAN 222

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N ++G ++++    +    +E    Y   I  S + LL +IN++LD S++E
Sbjct: 223 MSHEIRTPMNGVMGMADLLRETDL----DEDQALYATTIRNSAEALLGIINDVLDYSKVE 278

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           A R  L      L   + E I+++Q +A+++ ++++   D  L   +  D   +RQV+ N
Sbjct: 279 ADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDYDLFLPTRLRGDGGRIRQVLTN 338

Query: 375 LLSNAVKFTAIGGRV--HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+ NAVKFT  G  +   V V        +++++D G GIA  +I  V   F Q   A  
Sbjct: 339 LIGNAVKFTPEGHVLIRVVGVSAEGRAEIHVTVEDTGIGIAPDKIGHVFGEFNQVEEAQN 398

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAIL----PNTRVLNFIPE 483
              +G GLGL IAQ ++   GG+  + S   +G        L    P  +    +PE
Sbjct: 399 RRFEGTGLGLAIAQKLIRLMGGEIWVESAPGQGSVFGFTITLDIEEPQGQEPCRLPE 455


>gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I       ++ D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 761

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  + +    R++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++  E +     
Sbjct: 515 IQNIKDTEGVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ +   LL LIN+ILDLSR+E+G+         L  ++ E     QL   
Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E  +E+  ++      V  D   ++QV+ N ++NA+KFT  G   ++ VG+   T G   
Sbjct: 633 E-GVELRMRVPEIPVIVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI E +   V   F +         QG GLGL I Q I    GG+  ++S+
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744

Query: 462 LREGVEVIAILPNTRV 477
             +G      LP  R+
Sbjct: 745 YGKGSRFTLTLPKERI 760


>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 935

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487
           G GLGL I++ ++    GQ             +G              F  ++ HE
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528


>gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I       ++ D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1181

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 8/251 (3%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                   L+   ++ AE+ + AKSRFLA++ HE+RTP+  +LG SE++    + P+    
Sbjct: 792  RRRQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPV---- 847

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y G I ++G HLL L+N+ LDL+RIEAGR EL      L  ++ +   ++Q  A+++
Sbjct: 848  QRSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQR 907

Query: 347  NIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYIS 404
             +   +    P   SV  DE  +RQ++LNLL NA+KFT   G V + V       G    
Sbjct: 908  QLAFQRGDDPPGPISVSGDEMRVRQILLNLLGNAIKFTER-GHVGLAVRLDDNGAGLCFE 966

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+GPGI   +   +   F Q       S   G GLGL I Q +    GG+  + S+  
Sbjct: 967  VHDSGPGINAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPG 1026

Query: 464  EGVEVIAILPN 474
            +G      LP 
Sbjct: 1027 KGARFQVRLPL 1037


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETR-KRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + +L+    +       E  K   + +  +R ++ +  K  FLA+ SHELRTPLN I+G 
Sbjct: 834  IVLLTWFIHQQRQKVSFERQKVEQERSVVRRLKQLDKLKDEFLANTSHELRTPLNGIVGL 893

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +E +     GPL+++T K+ +  I  SG+ L  L++++LD ++++     L++ A+ +  
Sbjct: 894  AESLMDGVTGPLSHKT-KQNLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHV 952

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +V   + +       K IE+   +   L  V ADE  + Q++ NL+ NAVKFT   G V 
Sbjct: 953  LVDVVLSLTLPIIGAKPIELVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDE-GSVT 1011

Query: 391  VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            ++     G    IS+ D G G+ E     +  SF Q   A      G GLGL + + ++ 
Sbjct: 1012 ISAE-VQGEEICISVADTGIGVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVE 1070

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
             HGG   +RS L +G      LP    +    +     T    +A
Sbjct: 1071 LHGGTIGVRSTLGKGATFYFYLPLNAAIEDEADGQEPETNSAYHA 1115


>gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 938

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 139/250 (55%), Gaps = 9/250 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E ++ KS  ++++SHELRTPL+++LGF+E++  + + P   E  K+YI  IH+  + L N
Sbjct: 575 EVDMMKSELVSTVSHELRTPLSSVLGFTELLLAKEIKP---ERQKKYIETIHKEAKRLTN 631

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ RIE+G+   S + ISL  ++ + +   Q+   +    I    + + + V A
Sbjct: 632 LINDFLDIQRIESGQQVYSMNKISLTALIEDVLKNFQI---DPQHNIRFVDESTNAIVSA 688

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+ + Q++ NL+ NA+KF+  GG + + +   +     +SI+D G GI E  IP++   
Sbjct: 689 DEERIIQLLFNLIGNAIKFSPNGGEIIIRMQNINE-TVQVSIQDCGIGIPESAIPSLFQK 747

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   + +    G GLGL +++ I++ H G   + S+   G  +   LP       I E
Sbjct: 748 FKRVDNSSRRKIGGTGLGLALSKEIISKHKGDIWLESEEGIGTTIFFTLPLY--DQEIVE 805

Query: 484 DNHESTQYKC 493
           + +E T+ K 
Sbjct: 806 NRNELTEEKT 815


>gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
 gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 8/259 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E   +  +L        +    AE  N AK+ FL+ MSHE+RTP+NAI G + +     
Sbjct: 264 TELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMTTIAAANI 323

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +   + +  I  S +HL+ LIN++LD+S+I+AG+ +++     L ++      +
Sbjct: 324 ---NDRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQNVTESITAI 380

Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +  +A  K ++     +D + + +  D   + QV++NLLSNA+KFT  GG V + +    
Sbjct: 381 IYPQADAKGLKFSVPLVDITDTVLTGDALRLNQVLINLLSNALKFTPEGGAVRLEIRQLQ 440

Query: 398 GR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            +        ++ D G G+++  +  + T F Q S A   +  G GLG+PI ++++   G
Sbjct: 441 KKAGRVRLRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGLGMPITKNLVTLMG 500

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G   +RS+  +G   I  L
Sbjct: 501 GTVSVRSEPGKGSTFIVEL 519


>gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
          Length = 794

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++    + +   LI + +  +    + + +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 389 LRTSKLKNKLLILIDKQKEDEIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 448

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++        N E   EYI  I  + + LL LIN+ILD+++IEAG  E  +S I +  +
Sbjct: 449 NLL----TIAENEEERDEYINIISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINAL 504

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + +     +L+A E  +++          + +D+  + QV+ N ++NA+KFT  G    +
Sbjct: 505 LSDIEQSSRLKAPE-GVQVSFVEKLPYCIIMSDKNRLAQVMTNFINNAIKFTKEGS---I 560

Query: 392 TVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             G+          +KD G GI   +   V   F +      S  QG GLGL I Q I+ 
Sbjct: 561 RFGYEHKDDKLLFYVKDTGCGIEPEKKDLVFNRFVKL----NSFAQGTGLGLAICQMIIK 616

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
             GG+  + S+L  G      LP
Sbjct: 617 KLGGEIGVESELGTGSTFWFTLP 639


>gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 489

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                ++ F+A++SHELRTPL +I GF E +    +   + E  + ++G I+   Q L  
Sbjct: 246 RLEQMRTEFVANVSHELRTPLTSIRGFVETLLEGAL--EDPEVSRRFLGIINHEAQRLQQ 303

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L LSR+E+           L   +   +  +   A+EK + + ++I   +  +  
Sbjct: 304 LIEDLLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREKGVALEKEIPAEIPELAI 363

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            E  + QV+LNL+ N +K+T  GGRV +      G    + + D G GI    +P V   
Sbjct: 364 SESYLNQVLLNLIDNGIKYTPAGGRVTIRAARL-GELVQVEVADTGIGIPPESLPRVFER 422

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL I + I+ +HGG   + S+  +G      LP  
Sbjct: 423 FYRVDKARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGSHFFFTLPIA 474


>gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 1279

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 20/288 (6%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            +  +A  F   I   L+    + L  + E+         A++     ++ AE+   AKS 
Sbjct: 750  LWQSAAIFLVIIAATLWW--NRRLKAEVERR------RQAEAALLVAKEAAEQATKAKSV 801

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA MSH++RTPLN+++GF++++       + +   K Y+  I   G+ LL +IN+ILDL
Sbjct: 802  FLAHMSHDIRTPLNSVIGFTDIL----DTLIKDPVQKGYLRSIKIGGKALLGIINDILDL 857

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
            S+IEAG+  L    ++   + R+   +   + + KN+     +D +L   +  D   +RQ
Sbjct: 858  SKIEAGQMVLHRENVNPHQLFRDMEQLFHEQIRHKNLNFVVDVDEALPQSLLVDAVRLRQ 917

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSF 424
            ++LNL+ NA+KFT   G V + V       Q       I ++D+G GI+  +  ++   F
Sbjct: 918  ILLNLIGNAIKFTEQ-GYVTLRVQKIFRDAQCSKLDLQIDVEDSGMGISPDDHESIFQMF 976

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             Q     +    G GLGL I Q ++    G+  + S+L +G     IL
Sbjct: 977  QQSKGQDERRFGGSGLGLAICQKLVTMMDGEIHVASELGQGSTFSVIL 1024


>gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 850

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 152/306 (49%), Gaps = 13/306 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               +     IS +G      S +    +   +   + L   A +   + E   A +   
Sbjct: 406 GFFSAQSTPLISRSGQFIGLFSTYWRRHHRPSERERRFLDLLARQAADLIEQRQAIAERQ 465

Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +        R+ AE+ N  K  FLA +SHELR+PLN ILG+S +++ +   P+     K+
Sbjct: 466 QLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITT---KK 522

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I R+ +    LI+++LD++RI  G+ +L E+ ++L+ +V   + +++  A+ K+I 
Sbjct: 523 GLSTIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAEAKSIA 582

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  ++  ++  V  DE  + QV+ NLLSNA+KFT  GG+V V +   +G    +++KD G
Sbjct: 583 LQFEVI-TVCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVRLE-VNGEQACLTVKDTG 640

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            GI+   +P +  SF Q  +++     G+GLGL I + I+  H G     S    +G   
Sbjct: 641 KGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEGQGATF 700

Query: 469 IAILPN 474
               P 
Sbjct: 701 TVQFPV 706


>gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
 gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
          Length = 444

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 12/292 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS----------LSDETRKRAEEENLAK 249
              +  H  + +   +        L    E                     +  E +  K
Sbjct: 115 LAQVLRHAIRIHRAEMQTALANQQLRETNEQLLRKNQELEQQRQQIQLQNFKLLEASRLK 174

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHELRTP+NAI+GFS+++     G L +    + +  I  +G++LL L+NE+L
Sbjct: 175 SQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTH-QQTDMVERILNNGKNLLMLLNEVL 233

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D S++E GR EL      L  I+   +  ++  A+ K + +   ID     V+ D   +R
Sbjct: 234 DFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPLVFNDSVRVR 293

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA+KFT   G + + V         I+++D G GIA  +   +  +F Q   
Sbjct: 294 QILINLLSNAIKFT-ESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHIFEAFRQVDQ 352

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +I     G GLGL I  S++   GG+ ++ S+L  G      +P    L   
Sbjct: 353 SITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIPRQLSLPST 404


>gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999]
          Length = 1029

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           ET +RA E N +KS FLA+MSHE+RTP+N I+G +E+++  ++         EY   I R
Sbjct: 518 ETEQRANEANQSKSDFLANMSHEIRTPINGIIGMNELLQKTSLTT----QQTEYTQAIQR 573

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S Q LL LIN+ILD S+IEAG+  L+   +++ + +      +Q  +  KN+++  ++ P
Sbjct: 574 SSQALLGLINDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQPLSDAKNLQLDIQVCP 633

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            L ++ +D   +RQ+++NL SNA+KFT   G + ++      +    +I D G GI   +
Sbjct: 634 -LVTIMSDPMRLRQILINLCSNAIKFT-EYGSIRISFSVIDEQYLRFTISDTGIGIPSEK 691

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   + K +  G GLGL I+Q +    GG      + +EG E         
Sbjct: 692 SSQLFEKFNQLDTSSKRSIGGTGLGLTISQQLSQLLGGAIGFNPEYQEGAEFWFT----- 746

Query: 477 VLNFIPEDNHESTQYKCY 494
           V   + E   +S+ +K +
Sbjct: 747 VDTQLNEFYSQSSVFKTH 764


>gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
 gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
          Length = 813

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 547 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 606

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 607 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 666

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 667 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 726

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
            + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 727 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 786

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
            QF I S   +G  V  + P TRVL
Sbjct: 787 AQFAIDSNPGQGTVVEIVFPPTRVL 811


>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 823

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 8/286 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  H  +  +++     E   +  +LE +     +  + A+  N AKS FLA MSHE+R
Sbjct: 137 RLALHSEELKLEVAERTGELSAVNRQLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIR 196

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+  +LG +E++    +G    +    Y+  + RSG+ LL++IN ILD S+IEAGR EL
Sbjct: 197 TPMYGVLGMTELL----LGTDLTKEQSRYVETVRRSGEALLSIINNILDFSKIEAGRMEL 252

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380
                 L  +  +   +    A  K +E+  +++  L  ++  D   +RQV++NLL NAV
Sbjct: 253 ETIPFDLRQLASDAAAIFAEDAARKGLELSLELERGLPRMFLGDPGRLRQVMVNLLGNAV 312

Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           KFT  GG V +T+          IS++D G GIA      +   F QG  ++     G G
Sbjct: 313 KFTLKGG-VRLTLKLAEEPALVRISVEDTGIGIAPEARLRIFNQFAQGDESMTRKYGGTG 371

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL IA+ +    GG   + S+   G      +   ++    P   
Sbjct: 372 LGLAIARQLTELMGGVLDVESEPGRGSCFSFTV-RLQLHEEAPRSE 416


>gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1135

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 16/326 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P   A       S   L +        AL+ +           V +L   A       
Sbjct: 574 MLPWREAALESGYQSSIALPLGNEQRTFGALTLYAVQPDAFSAQEVGLLEELARNVAFGI 633

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E   A++     R  AE  N AKS FLA+MSHE+RTP+NAI+G + ++    + P     
Sbjct: 634 ESFRARTQ----RDAAEGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRSGVTPEQAAR 689

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +  +  + QHLL++IN+ILDLS+IEAGR +L  +   L DI+     ++   A++K
Sbjct: 690 ----LEKVDSACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSIIAEPARDK 745

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---- 402
            + I    D     +  D   +RQ +LN  SNAVKFT   G + +        G      
Sbjct: 746 GLAIDVSGDAQALWLRGDPTRLRQALLNYASNAVKFTDK-GSISLRAELLQDGGDELLLG 804

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+KD G GI   +I  +  +F Q  ++      G GLGL I Q ++   GG+  + S  
Sbjct: 805 FSVKDTGIGIEPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGGEVGVDSTP 864

Query: 463 REGVEVIAILPNTR---VLNFIPEDN 485
            +G      +   R   V+   P D 
Sbjct: 865 GQGSHFWFTVRLQRGHSVMPAAPADE 890


>gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 867

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 180/485 (37%), Gaps = 31/485 (6%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHV-ESLFRVSPILPLFVLLVANIGTWFTQNP------ 70
              DH     P+   +           ++     I  ++ L++  +  W   +       
Sbjct: 266 EYRDHRSGSVPAMTGYALTTGRPEWGLAILPYLAIGAVYALIIPTVFHWMPGHTLSRDGK 325

Query: 71  ---IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIG--LCWTLLT 125
              I  + + I + +     ++    +        V    I            +  T   
Sbjct: 326 ELGILILVAAILVVLAMLRQAVAAGELARLKTEHAVQASEIRFAALARHSSDLIILTGTD 385

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L            +  +   L+ +S+               F   V+A     +++   +
Sbjct: 386 LRARFASDSIQRVLGHTPRDLMRVSLLDYL-QPEDRVRASRFIARVLAAPDITLVTEWPM 444

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
             +        +            S+   +         + E +  +   ++ R  AE  
Sbjct: 445 RHADGTWRDIEILATNL-------SHNPAVGGLVLNGRDVTERKRHQHELEQARAAAESA 497

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK  FLA+MSHE+RTP++A++G         +        ++Y+  IH +G  LL ++
Sbjct: 498 NRAKGEFLANMSHEIRTPMHAVIGL----SSLLLDSTLLPQQRDYLERIHLAGTALLGVL 553

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILD S+IEAGR  L    + L +++     + +++A++K + +  ++ P +   +  D
Sbjct: 554 NDILDYSKIEAGRMRLESIPLRLQEVLDTTHALFEIQAEKKPLSLEFELAPEVPERLQGD 613

Query: 365 EKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421
              + QV+ NL+ NA+KFT  GG  V VT    +     I  S++D G G+   ++  + 
Sbjct: 614 PLRLLQVLNNLVGNALKFTHTGGVWVGVTCQEQTETSVLIKISVRDTGIGLTPAQLERLF 673

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F Q   +      G GLGL I + +    GG+  + S   +G          R+    
Sbjct: 674 GVFHQADASTTRQYGGTGLGLSICKRLTELMGGEIGVESVAGQGSTFWFT---ARLKPLA 730

Query: 482 PEDNH 486
           P+ + 
Sbjct: 731 PDTDQ 735


>gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 930

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 179/471 (38%), Gaps = 14/471 (2%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDRE-IITLHVESLFRVSPILPLFVLLV 59
           +Y  R+   + +   I+     L       ++  R+  +    + L  +  +  + V   
Sbjct: 27  IYMERQQVRQALVTRIADVTATLAPAVSLALEEGRDDHLRRLAQRLLDIDEVAAVSVRDA 86

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
                             +             + +       E+           + +G 
Sbjct: 87  DGDAVLSLGETQPAPALPMPDRSALQEAETRWRWLQPLGSPAEIRGNAGTAYWLDVDLGT 146

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               LT             +      LIA  +S      L   + L         S +  
Sbjct: 147 TALTLTFYRQLASHGMAGLVLGLVLFLIAYPLSRRLTAPLQRHITLLERLHGGDFSARLT 206

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
                  ++L   L         +      +  +I     +  + +  +EV     D   
Sbjct: 207 PRGSRELVTLGHQLNALGEQMMRLRE---DTQAQIDQTTFDLRESMETIEVKNIELDMAH 263

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RA E N  KS+FLA++SHE+RTPLN I+GF +++    +        +E++  +  +  
Sbjct: 264 RRALEANRIKSQFLANISHEIRTPLNGIIGFCQLLGRSALDS----RQREWLEQVQTASD 319

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSL 358
           +LL+LI+++LD S+IEAG+ EL    + ++ +V E + +    AQ K++ +     D   
Sbjct: 320 NLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTAQRKSLHLLGLVYDDVP 379

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAE 414
             +  D   ++Q++ NL++NAVKFT   G V V V             IS++D G G+  
Sbjct: 380 DQLLGDPLRIKQILTNLVNNAVKFTER-GEVVVRVMLDDLNATSSKLRISVRDTGIGLDL 438

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
                +  +F QG  +      G GLGL I++ ++   GG   + S+  EG
Sbjct: 439 PSRERLFQAFSQGDASRSRKYGGTGLGLMISKRLVEQMGGDIDVESESGEG 489


>gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 148/327 (45%), Gaps = 33/327 (10%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYIT-----YHLFKSNVKILSCQAEKDDLIAELEV 230
              +    +    L  +      +   +T     +        +L    ++  +  +   
Sbjct: 343 LVLLEQFQIRAYLLVPVFIGDRFWGLLVTCQQNPHQWDDIEQSLLRRVRDQLGVALQHAE 402

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                  ++++AE  N AKS FLA+MSHELRTPLNAILGFS+++             K+ 
Sbjct: 403 LMHQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNR---DKNLTPKQKQT 459

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+RSG HLLNLIN++L++S+IEAGR  L+     L+ ++     M  L+ + K +++
Sbjct: 460 LTSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKL 519

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------------- 393
                  L   +  DE  +RQV++N+L+NA+KFT   G V + V                
Sbjct: 520 LVDKALDLPPYIRTDESRLRQVLINVLTNALKFTEQ-GSVALKVYTQPLRSPNLVPTHDD 578

Query: 394 ------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          I ++D G GI+  E+  +  +F Q S    S  +G GLGL I Q 
Sbjct: 579 GNAVTEEHQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNS-TEGAGLGLAICQH 637

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
            +   GG  LI SK  +G  V   +P 
Sbjct: 638 CIELMGGNILIDSKEGQGTTVQIKVPV 664


>gi|39952003|ref|XP_363718.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15]
 gi|145020511|gb|EDK04640.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15]
          Length = 1307

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 754 DTDLTQY----QREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNA 809

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A +K +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 810 LKTLAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868

Query: 395 WTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             +              + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 869 KGNDVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKR 928

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G      
Sbjct: 929 LVNLMGGDVWVKSQYGKGSSFYFT 952


>gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1202

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 12/241 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             R  AE+ N AKS FLA+MSHE+RTP+N ++G +E+     +  +     +EY+  + +S
Sbjct: 815  ARIEAEQANRAKSEFLANMSHEIRTPMNGVIGLTEL----ALMTVEEPKAREYLQMVKKS 870

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G  LL++IN+ILDLS+IEAG+  L +   SL + +   +  L + AQ K +++  ++ P 
Sbjct: 871  GLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQVAPD 930

Query: 358  LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGP 410
            +  ++  D   +RQV+ NL+ NAVKF+   G V V+VG   G            + D G 
Sbjct: 931  VPDALMGDRGRLRQVLTNLVGNAVKFSHK-GWVRVSVGLDDGNVSSEQATISFEVADEGI 989

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI   ++ T+  SF Q   +      G GLGL I++ ++   GG    RS++  G     
Sbjct: 990  GIPADKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHLVELMGGTIQARSEMGIGSTFSF 1049

Query: 471  I 471
             
Sbjct: 1050 T 1050


>gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 640

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 4/230 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  +S FLA++SHEL TPL  ++G S  + L  +G L+ +  ++Y+  IH SG+HLL +I
Sbjct: 409 NRLRSEFLATISHELLTPLTYVIGMSSTLLLWPLGELS-KRQRDYLQTIHDSGEHLLEMI 467

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWA 363
           N+ILDLS++EAGR  L+ +  SL+   +  +  L  +A+ + + +     I+PS  S   
Sbjct: 468 NDILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKLDLQINPSHDSFTG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q++ NLL+NA+KFT  GG V + + W         ++D G GI E ++P +   
Sbjct: 528 DSTRVEQILWNLLTNAIKFTPEGGNVTLRL-WVEDATAIFQVEDTGIGIPEEQLPLLFEK 586

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F Q     +   +G G+GL + + ++  H G+  + S +  G      +P
Sbjct: 587 FQQLDTPYRRRYEGTGVGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 636


>gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 774

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 12/254 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I E ++A+      ++RAEE N  KS FLA++SHE+RTPLNAI+GFS ++ +      +
Sbjct: 530 FITERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMT----ED 585

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  KEY+  I ++   LL LIN++LDLS+IEAG  +L  S   L  ++     +++ R 
Sbjct: 586 EEEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRL 645

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402
           Q++   IF+   P    V++++  ++Q++LN L+NA KFT+ G    +  G+    +  Y
Sbjct: 646 QDRVDLIFEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGS---IRYGYEVRDKDIY 702

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI E ++  +   F +      S +QG GLGLPI Q I+ N GG+  + SKL
Sbjct: 703 YYVTDTGTGIPEDKLHLIFERFIKLD----SFKQGTGLGLPICQLIIQNMGGEIGVNSKL 758

Query: 463 REGVEVIAILPNTR 476
            EG      LP   
Sbjct: 759 GEGSTFWFTLPLKP 772


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1163

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T           L +    +   +   D    EL  A+   +E  +  +  +  KS
Sbjct: 436 AHLETQQVELEQTNEQLAEQAQTLAEQRDAMDQKNTELNQAQVQLEERAEELQRSSKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L+ E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +      M +  A  K +    ++ P    +++ D + + 
Sbjct: 555 ISKVEAGKLEVMPENTSVARLADGLRGMFEPLAAVKQLAFSVQLQPDAPSTLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QVI NLLSNAVKFT   G V +T+           ++D+G GIA  +  ++  +F Q   
Sbjct: 615 QVIKNLLSNAVKFT-EHGTVSLTIAGQPDDRIAFIVRDSGIGIAADQQESIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  G GLGL I++ +    GG   + S   +G     +LP
Sbjct: 674 TTNRKYGGTGLGLSISRDLATLLGGSISVSSAPGQGSVFTLVLP 717


>gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 36/277 (12%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  E     K  F++ +SHELRTPL +I G  +++    + P  +E  +  +     + 
Sbjct: 439 RREVE---RLKDEFVSVVSHELRTPLTSISGALDLLASGVV-PAGSEDAQRMLNIAANNT 494

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ LIN+ILD+ RIE+G+ +++  A +  D++ + + +++  A++  I++   + P  
Sbjct: 495 DRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLS--MSPLS 552

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------------------ 400
           + +WAD   + QV  NL+SNA+KF+  G  V VT                          
Sbjct: 553 AHLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEKSQTPIPLYPQTPIPL 612

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    ++KD G GI   ++ ++   FGQ   +    + G GLGL I +SI+ +HGG
Sbjct: 613 YPHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGG 672

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           Q    S   EG      LP        PE+ ++  ++
Sbjct: 673 QIWAESTSGEGSTFSFTLPI------FPEEQNKEEEF 703


>gi|254420553|ref|ZP_05034277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186730|gb|EDX81706.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 605

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 178/439 (40%), Gaps = 22/439 (5%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           ++ +   +  L +   A             +W ++TLA  +    +  K+ +        
Sbjct: 26  AILQTQYLRYLIIASWALGLLGTVAWWQAMIWFVVTLAAGSIRGVVEHKLSHRVDV---- 81

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             W +            W    L+   + +    T+  +  +   + + A        AV
Sbjct: 82  -GWGMVFPAVATVTTAAWAAAPLMAWFSNSAFGQTLAVALIISGYVLVFAQLRNSPRQAV 140

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +S    V A      +       S+  +L   ++    +         +I + QA +  
Sbjct: 141 IISSPYGVAACIILFSLWGTPQFWSMLAVLPFTMACLFVLVTMTMLRERRIDAFQAHQAH 200

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI E        +  R +A+  N AKS FL  +SHELRTP+N +LG ++++    +    
Sbjct: 201 LIEE-------LEAARDKADAANDAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---- 249

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY+  I  SG +LL+L+N+ILD+++IEAG+       + + D+ R      + +A
Sbjct: 250 EGAQREYLSIIRNSGDNLLSLLNDILDMTKIEAGKMTFEVVDVVVDDLQRRISGPFEAQA 309

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRG 400
           + K +    +++  +   V  D   + QV+ NLLSNAVKFT + G +   V     S R 
Sbjct: 310 EAKGLTFVSELEGDIPAVVRGDPLRVCQVVQNLLSNAVKFTDV-GEIRYVVRGRRISDRR 368

Query: 401 Q--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D+G GI+  ++  +   F Q   +      G GLGL IA+ +    GG   +
Sbjct: 369 VGFEFCVTDSGAGISPTDLERLFQPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDISV 428

Query: 459 RSKLREGVEVIAILPNTRV 477
            S +  G      +    V
Sbjct: 429 DSSVGRGSSFTLTVEAEVV 447


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 949

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 171/405 (42%), Gaps = 13/405 (3%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTW 132
           SL     + + L+L ++      +        +       G +  G+    +        
Sbjct: 139 SLGISTAHQSRLALRRRQNPLGGEDVLEVAAPVLSEGAHAGTVIYGISTRSVVERMVQAR 198

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                 +  +  L++AL + + +                +     A  ++     S A  
Sbjct: 199 DLAANRLVTTLGLIVALILGSGAASYFLVKRVAVHITEPLLALRTAAGAIATGLRSSAPP 258

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
             + ++           S  ++    +  + ++   E A        ++A E +  KS F
Sbjct: 259 TESPIADRKKWERVQITSGDELELLGSAFNSMVEANEQAFEELRVKTEQALEASRMKSEF 318

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+N ILG   +++ +++    +   + Y+  +  S   L+++IN++LD S
Sbjct: 319 LANMSHEIRTPMNGILGVIRLMQNQSL----DGKMRRYVETVDASANTLMSIINDVLDFS 374

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++EAG+Y     +  L  +++E   ++  +A EK +E+  +++  + + V  D    RQV
Sbjct: 375 KLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRVPTGVVGDPDRFRQV 434

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQG 427
           + NL+ NA+KFT   G V +    +          +++ D GPGIA  +   +  +F Q 
Sbjct: 435 LTNLVGNAIKFTDR-GEVLIDASTSQQDKATALIKLAVVDTGPGIAPDDQKKLFAAFSQV 493

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++     G GLGL I++ ++   GG+  + S   +G      +
Sbjct: 494 DGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGSRFWFTI 538


>gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
 gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
          Length = 985

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +   ++L+ A    +E        RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++
Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P+     K Y   I+RSG+ LL ++N++LD S+IEAG  E+      L  +V +
Sbjct: 496 IDSGLNPM----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
              ++  +AQEK +     I+  +   W  D   + QV+ NL+ NA+KFT  G   ++V+
Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVS 611

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +           + D G GIA+ +  T+  +F Q    +     G GLGL I++ I+   
Sbjct: 612 LNPEDESQVLFEVSDTGIGIAKKDQKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GG   + S+   G      +P        P +       +C
Sbjct: 671 GGCLDVDSEEGHGSRFWFSIPLE---ESEPVETVTIANARC 708


>gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 660

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             +    +L   L    Y  Y        +    A+  +   +LE+++      ++RAEE
Sbjct: 370 FILFTFLVLIGGLFISLYYYYRTKILKNHLEKTTAQLREDKKKLELSEIALRHAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS ++          +  KEY   I  + + LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV---ETTDEQKEYADIIQTNSELLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+         L++  +  I + + + + ++I++  ++      ++ D
Sbjct: 487 ISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR-KNRTRDIDVRLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTS 423
              ++QVI+NLL+NA+KFT  GG + +             S+ D G GI E +   V   
Sbjct: 546 PLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGAGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +         QG GLGL I +  +   GG   I    + G   +   P  +  + 
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHPIKKRESE 658


>gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 1154

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 100/313 (31%), Positives = 173/313 (55%), Gaps = 9/313 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 607 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 667 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 783

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 784 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV-- 468
           GIAE ++  +   F +GS  ++    G+GLGLPI + ++   GGQ  + S+L +G +   
Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKI 901

Query: 469 IAILPNTRVLNFI 481
              LP+  V++ I
Sbjct: 902 KFYLPSKEVVHPI 914


>gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 766

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 7/245 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       + R  AE  N +KSRFLASMSHE+RTP+NA+LG   +++  T+ P      K
Sbjct: 221 EQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTTLKP----NQK 276

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +     S + LL++IN+ILD SR+EA  + L     ++   +   +     +AQ K +
Sbjct: 277 ELVNTATDSSELLLSIINDILDFSRMEANTFYLENHIFNIHKSLNSVLKTFHPQAQNKQL 336

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISI 405
           E+   I  ++ + V  D   +RQ++LNL+ N++KFT  G  ++ V      GR Q + S+
Sbjct: 337 ELSLFIADNVPTYVQGDAHRLRQILLNLVGNSLKFTDDGQVQILVNAEEHEGRIQLHCSV 396

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D+G GI + ++  +   F     +     +G GLGL I Q ++    G   + S+   G
Sbjct: 397 QDSGIGIQQEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGLG 456

Query: 466 VEVIA 470
            E   
Sbjct: 457 SEFSF 461


>gi|88861247|ref|ZP_01135879.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88816728|gb|EAR26551.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 946

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 8/283 (2%)

Query: 215 LSCQAEKDD--LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
               AE     L  ++E      ++  K+ +  +  KS+FLA+MSHE+RTPL A++G +E
Sbjct: 443 RRAMAENARYVLSKKVEQRSVELEQISKQLQRASEVKSQFLANMSHEIRTPLTAVMGQAE 502

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +I     G +     K+ +  IH +  HLL LIN+ILDL+RIEA +  L  +   ++ + 
Sbjct: 503 LIIN---GDIPVSEIKDEVKIIHNNSLHLLELINDILDLTRIEANKLILDRAPADVVALG 559

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +E + M    A++K +++  +         A D+  ++Q+++NL SNAVKFT   G V V
Sbjct: 560 KEVVHMFCESAKQKGLKLSFQHFLCTPYYIAMDKVRLKQILINLCSNAVKFTEQ-GEVKV 618

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V  TS   ++I I D G G+   ++  +  SF QG   I     G GLGL +++ +   
Sbjct: 619 EVWPTSSGLKFI-ISDTGIGMTNKQLGNIFNSFTQGDNTISRRFGGSGLGLCLSEQLANL 677

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
            GG   + S+L +G      L   ++++  P    E +   C+
Sbjct: 678 MGGSISVTSELGKGSIFTLHLTCQQLVDHQPIAEAEKSLASCH 720


>gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 745

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                +      L +S+    + Q      + +    +    E R +A   N AKSRFLA
Sbjct: 180 AIGPRWIAWREALVRSDAGHPAVQQCVGRDVTDRTETERALAEARDQANAANRAKSRFLA 239

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
             SHE+RTPLN ILG S ++    + P        Y   +  SG+ L++LINE+LD S+I
Sbjct: 240 MASHEIRTPLNGILGMSGLLLETQLTP----EQTTYAKAVRSSGEALMSLINELLDYSKI 295

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAG+  L     +L  ++ E   +L  RAQ K +EI   +D  L   V  D   +RQV+L
Sbjct: 296 EAGKLALEAQPFALTALIEEITELLAPRAQGKQLEIAAYLDERLPTWVTGDAARLRQVLL 355

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL  NA+KFT+ GG   +             ++D G GIA      +   F Q   ++  
Sbjct: 356 NLAGNAIKFTSKGGVALIAEPGIWPNEISFQVRDTGIGIAADAQERIFREFEQADDSVAR 415

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  G GLGL I+  I+   GG+  ++S+   G      +P    L 
Sbjct: 416 SFGGTGLGLAISDRIVKRMGGRIALQSQPGAGSTFEVSVPLPPALE 461


>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
 gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
 gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
 gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
 gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
 gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
 gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 935

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487
           G GLGL I++ ++    GQ             +G              F  ++ HE
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528


>gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
 gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
          Length = 959

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 24/357 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +     ++I   +  +           +   +        I      +++  G      
Sbjct: 344 VLGMVIVVMIVWRVVYVQVLKRLAEYSAALASIAQGQLKVDITVKGNDELAHMGQAIITA 403

Query: 198 SFFTYITYHLFKSNVKILSCQAEKD--------DLIAELEVAKSLSDE-------TRKRA 242
                    + +S VK      E          +   +L+ A    +E        R+ A
Sbjct: 404 RNTAQALKVVAESEVKAKKELEEHKEHLEELVTERTHQLQQANERLNEEVENHAHARQLA 463

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ + AKS FLA+MSHE+RTP+N +LG + +++ E +    N+    Y+  I+RSG  LL
Sbjct: 464 EQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDEGL----NKQQAYYVDVINRSGSTLL 519

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N++LD S+IEAG  E+      L  +V +   +L  RA EK++++   ++  L   W
Sbjct: 520 AILNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELGRYW 579

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPT 419
             D   + QV+ NL+ NA+KFT   G V + V             + D+G GI+  E   
Sbjct: 580 RGDMTRISQVLNNLVGNAIKFT-DHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQQN 638

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +F Q S  + S   G GLGL I++ I+   GG+  + S   +G      +P  +
Sbjct: 639 LFDAFTQASGGLSSK-GGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIPLAQ 694


>gi|326315055|ref|YP_004232727.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323371891|gb|ADX44160.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 1156

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 110/445 (24%), Positives = 200/445 (44%), Gaps = 32/445 (7%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLIT--LAVYAANLSLGK-KVMNSDIKIGEVYVWR 107
           I     + +A +  W+T    +      T          ++ + +  + D+     Y   
Sbjct: 475 IALALSMALAPLFAWWTGGRYYLARQPATGWAPGELVRCAVCENRFESEDMARCPAYGAA 534

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY--AVFL 165
           I  L   +               T +     +   A LL+  + +A  NF L     VF 
Sbjct: 535 ICSLCCSLESRCHD------RCKTGSRAADQLRSLAALLLPRAWAAKMNFRLGQYLMVFA 588

Query: 166 SFFPVVVALS------------TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           S   VV  L              Q +    +   +L  +LA   +++  ++    +    
Sbjct: 589 SLCAVVAFLVGVVYVQEGLETPAQFLRVPFLKVYALLALLAAVCAWWVVLSTGSRRMAQD 648

Query: 214 ILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
               Q +     I   +   +     R RAE  N+AK+R++A M+HELR+PLN+ILG+++
Sbjct: 649 ESERQTQLLLQEIEAHKRTDAELQAARDRAEAANMAKTRYVAGMTHELRSPLNSILGYTQ 708

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++     P +    ++ +  I RSG+H+  LI++ L+L+RIEAGR   + + + L ++V
Sbjct: 709 ILQK---APPDAHALRDALSTIERSGRHMHALIDDSLELARIEAGRLRQAVAPLPLAELV 765

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           R+   ML+ +A+ + +    ++  ++   + AD + +RQ+++NLLSNAV+FT   G V +
Sbjct: 766 RDVEGMLRPQAEARGLAFAVEVLGTMPEWIRADARRLRQILINLLSNAVRFTRQ-GEVRL 824

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            + + +     I + D G GI   ++  +   F +GS   +++E G GLGL I   +   
Sbjct: 825 RLDFRA-HVARIEVIDTGIGIEPQDLERIFLPFERGSAGRRASEPGTGLGLTITHLLTEL 883

Query: 452 HGGQFLIRSKLREGVEVI--AILPN 474
            GGQ  +RS + EG        LP 
Sbjct: 884 MGGQLSVRSTVGEGSTFTARLYLPA 908


>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 962

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 15/280 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +    +   Q    D   ELE A+ L +E     E  +  KS FL++MSHELRTPLN+
Sbjct: 239 LAEQTHALEQQQKILQDNNRELEQARELVEEKANELELSSKYKSEFLSNMSHELRTPLNS 298

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +L  S ++       L +    EY   +H +G  LL LINE+LDLS+IEAGR  L+   +
Sbjct: 299 LLILSRLLYENKDENLTD-KQIEYSRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEM 357

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           +L              A+EK + +   +   + S ++ D + + Q++ NLLSNA+KFT  
Sbjct: 358 NLKGFTSYVEQHFLHIAEEKGLYLHIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTS 417

Query: 386 GGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           GG + + +                     IS+ D G GI E +   +  +F Q       
Sbjct: 418 GG-ITIQIDRPTAGIDLSRSTLNPQHAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSR 476

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              G GLGL I + +    GG+  +RS+  +G      LP
Sbjct: 477 KYGGTGLGLSITRELAKLLGGEIQLRSEEGKGSTFTLYLP 516


>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
 gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
          Length = 935

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +     Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + V + + ML   A +K+I +      ++   V  D    +Q++ NL+SNA+
Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487
           G GLGL I++ ++    GQ             +G              F  ++ HE
Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528


>gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1132

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 134/251 (53%), Gaps = 6/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +      + +AE+   A+S FLA+MSHE+RTP+NAI+GFS+++  +++     
Sbjct: 535 ITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLDDSL----P 590

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  I++S + LL+L+N++LD ++++ G+++L     S+I+ +   +  L L+A 
Sbjct: 591 AEQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVSTLWLQAS 650

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K + +   +   +  S       +RQV+ NL+ NA+KFTA GG V + V          
Sbjct: 651 SKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGG-VSIDVSVKPSGCIEF 709

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D G G+   ++  V  +F Q   ++     G GLG  I++ ++   GG+   +S   
Sbjct: 710 AINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITAKSTFG 769

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 770 QGSCFGFTLPL 780


>gi|94264450|ref|ZP_01288239.1| PAS [delta proteobacterium MLMS-1]
 gi|93455140|gb|EAT05362.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 20/282 (7%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + +   +         I+  +  +    E +  AE  NLAKS FLA+MSHE+RTP+NAI+
Sbjct: 457 RDSSGRIREIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSHEIRTPMNAII 516

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G SE+     +        ++ +  IH S Q LL +IN+ILD S+IEAG  +L+      
Sbjct: 517 GLSELTLQGELAA----EQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHLQLAPHPFRP 572

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
             +V     + +  A  K +E+   +DP +  V   DE  + Q+  NLL+NA+KFT   G
Sbjct: 573 ARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLANALKFTRK-G 631

Query: 388 RVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           RV + +               +  G   ++ D G GI + +   +   F Q         
Sbjct: 632 RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQADDTTTRKY 691

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475
            G GLGL I+  ++   GG+  + S+   G        LP  
Sbjct: 692 GGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLPQA 733


>gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 914

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 7/242 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS  ++++SHELRTPL+++LGF+E++  + + P   E   +YI  IHR    L N
Sbjct: 574 EVDQMKSELVSTVSHELRTPLSSVLGFTELLLTKNIKP---ERQNKYIDTIHREAVRLTN 630

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LDL R+E+G+ + +   + L +I  E +   +    E+   +          V A
Sbjct: 631 LINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRFR---HEQKHNVHLIDKAREVYVNA 687

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + Q+ +NL+ NA+KF+  GG V + +         +SIKD G GI++ +I  +   
Sbjct: 688 DQDRLVQLFINLIGNAIKFSPQGGDVEI-LLENKNNSIQVSIKDEGIGISKQDIAQLFQK 746

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   +++    G GLGL I + I+  H G+  I S+  +G  V   LP         E
Sbjct: 747 FKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLPLANNTITFDE 806

Query: 484 DN 485
           ++
Sbjct: 807 ED 808


>gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 676

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 11/267 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               + + ++         K+AE  N+AKS FLA+MSHE+RTPLN I+G  ++++   +G
Sbjct: 274 NIRDMTQNKINLKSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLLDGTPVG 333

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N    +YI     S   L  L+++ILDLSRIEAG  E+ ES     D+    + +  
Sbjct: 334 ADQN----KYIELALTSCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNSILGLFA 389

Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----G 394
           + +  K + +   IDP++   V  DE  + Q++ NL+ N +KFT   G V V +      
Sbjct: 390 VESLTKAVTLKCIIDPTIHPEVIGDEGRVLQILFNLVGNGLKFTKE-GSVTVEITPLGSE 448

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +      ++ D G GI E  +  +   F Q   +     QG GLGL I + ++   GG
Sbjct: 449 KNNDYRVLFTVSDTGIGIHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKLVHLMGG 508

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481
              + S + EG  +  +LP  + +   
Sbjct: 509 SIEVDSVVGEGTSMNVVLPFKQSIEAS 535


>gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 810

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 149/268 (55%), Gaps = 6/268 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + Q++   L  ++    +   + ++ AE  N AKS FL+ +SHE+RTP+NA+LG S+++E
Sbjct: 401 ALQSQIATLDKQVRDRTAALSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLE 460

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +    +   ++Y+     SG+ LL+LI  +LD++R+E GR +L+    SL  +V+E 
Sbjct: 461 KTEL----DARQRKYLRMGKSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEA 516

Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +++L AQEK + + +KI  ++  +   D   +RQ+++NLL+NA+KFT   GRV V V 
Sbjct: 517 IDVVELAAQEKGLILNKKIALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQ-GRVLVEVT 575

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                G    + D G GI +  + T+   F Q   +      G GLGL I++ ++   GG
Sbjct: 576 PAEQTGVLFRVSDTGEGIPQESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGG 635

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +  + S+L  G +   ++P  R  +  P
Sbjct: 636 RIWVESRLGRGSDFFFLVPLERTDSAAP 663


>gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1170

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M +  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFKPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F++S+SHELRTPL +I G++E +    M   + E  + ++  IH+  + 
Sbjct: 356 RLRNLERIRRDFVSSVSHELRTPLTSIRGYTETLLDGAM--HDAEHTEAFLRIIHQESEQ 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N++LDLS+IE+GR E S + +SL+++V   +  L  +  +K++ +   I   L  
Sbjct: 414 LTALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPL 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V  D   +  V+ NLL NAVK+     GR+ ++          + ++DNG GIA+ ++  
Sbjct: 474 VRGDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKR-DGFVTLEVEDNGIGIAQKDLDR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + I+  H G   +RS+L  G      LP  
Sbjct: 533 IFERFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLPVA 588


>gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 17/337 (5%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +   A L ++ S+  +SN +    +FL+    V +L    I         +A  L   L 
Sbjct: 140 LNYVAILRLSSSLEEVSNIIKRLVLFLALVLTVSSLVALII------GFFIANELTKPLE 193

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                T  + K N K+ + +   D++    +    +++E   + EE    K+ F++++SH
Sbjct: 194 MVKKATQEMAKGNFKVRAEKTSNDEIGILADSFNKMAEE-LGQLEE---MKNEFISNISH 249

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPL +I GF+            N    EY+  I      L  L++E+LD S+IE  +
Sbjct: 250 ELKTPLTSIKGFAITAMDLV---EKNSELYEYLNIIDEETDRLSRLVDELLDFSKIELNK 306

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +LS   + L  ++ + + +L+  A    + +  K       +  D   ++QV++N++ N
Sbjct: 307 IKLSFEEVELDKLIEDTVAILRPHASNDGVNLICKKKIDRVVINGDVNRLKQVLVNIIDN 366

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            +K  + G  V V +     +   I I+D G GI + EI  +   F +G     +   G 
Sbjct: 367 GIKACSRGKYVKVFLDI-KDKKAVIRIEDQGQGIPQEEIKYIFDKFYRGKN---NKYSGT 422

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GLGL I++ I+  H G   + S++ +G      LP  
Sbjct: 423 GLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLK 459


>gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 350 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 409

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E + DI  S   LL L+N+ILDLS+IE+GR ELS     + ++V + +I+ 
Sbjct: 410 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 465

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D ++   V  D+  ++Q+I NL+SNAVKFT   G + V V +   
Sbjct: 466 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEA 524

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKD+G GI   ++ T+   F Q    +     G GLGL I + +++  G
Sbjct: 525 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 584

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+ +  S    G      +
Sbjct: 585 GKLVATSTKGVGTCFGFSI 603


>gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
 gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
          Length = 1945

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 25/390 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +++  +  G    ++ L     ++  +LT     T  IA+ ++ ++  M    +   
Sbjct: 1103 LNVVVLPVLFEGQVTAVIELASFRRFSEIHLTFLDQLTESIAIVLNTIAASMRTEELLKQ 1162

Query: 167  FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L  Q   +   +      A  L  +          L ++N ++          
Sbjct: 1163 SQSLAEELQAQQKELTETNKRLEQQAQSLRASEELLKSQQEELQQTNEELEEKAELLALQ 1222

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN++L  + ++   
Sbjct: 1223 NQEVERKNREIEQARRSLEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSEN 1282

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            T G L  +   +Y   I+ +G  LL LIN+ILDL++IE+G   +    +   D+      
Sbjct: 1283 TDGNLTLKQV-DYTRTIYSAGTDLLGLINDILDLAKIESGTMSVEIEQVLFTDLRDHLDR 1341

Query: 338  MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  AQ+K +    ++  ++   ++ D K ++QV+ NLLSNA KFT   G V ++V   
Sbjct: 1342 TFRQVAQDKKLSFLIELSGAVPKGLYTDAKRLQQVLKNLLSNAFKFTER-GEVKLSVEVA 1400

Query: 397  SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                                S+ D G GI+  +   +  +F Q   +      G GLGL 
Sbjct: 1401 REGWSLEIETLTNSATVLAFSVSDTGIGISPEKHRVIFEAFQQADGSTSRKYGGTGLGLS 1460

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            I++ I    GG+  + S+  EG      +P
Sbjct: 1461 ISREIANLLGGEIQLTSRPGEGSTFTLYMP 1490


>gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 792

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 3/317 (0%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           +P     + FP+  A       S  V+ +     +  AL   +        + V ++   
Sbjct: 471 VPEIADCAGFPLRAATIAAGFRSALVVPLIAPDGVLGALVVESGKHGPFAANKVSLMQAF 530

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           A +  L          ++E  ++    +  KSRF A+MSHELRTPLNAILG++E++    
Sbjct: 531 AHQSVLAMRNARLFRKAEENGRQLAVASEHKSRFFANMSHELRTPLNAILGYAELLRDGL 590

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L  +  K  +  +  +G HLL LIN++LDLS++EAG   L     S+ +IV + I  
Sbjct: 591 YGEL-PDRAKSVLERVESNGAHLLGLINDVLDLSKLEAGELSLVLDEYSMRNIVEQAIGA 649

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               AQ K + I Q I+  +     DE+ + QV++N+LSNA+KFT   G V +     + 
Sbjct: 650 TYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLINILSNAIKFTDE-GYVAIKAQTLAD 708

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D GPGI   +   +  +F QG       + G GLGL I++  +  HGG   +
Sbjct: 709 -MFEIVVTDTGPGIPPEDQARIFEAFQQGDNTSTRLKGGTGLGLSISRRFVEMHGGAISV 767

Query: 459 RSKLREGVEVIAILPNT 475
            SKL EG     ++P  
Sbjct: 768 ASKLGEGSSFTILVPIR 784


>gi|153812172|ref|ZP_01964840.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
 gi|149831827|gb|EDM86913.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
          Length = 971

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 159/363 (43%), Gaps = 13/363 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
               L+       +   +  +     A+     S   +      +    ++  +     S
Sbjct: 439 ASQALIYDNRQNFKSFPLTNTMEACFAVRGGEGSLLSILNKTLKAMPSDMLTSALAIYDS 498

Query: 182 M-------HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                     +  ++   + TA      I   +     K    +A       + +     
Sbjct: 499 TPDKVTFLDFIKDNMLAFIVTAGFLSLVIIGIILVLLWKARKAEAAAKLAANDTQKLNDK 558

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +   K+AE+ + AK+RFL +MSH++RTP+NAILG+++++E E +   +     EY+  +
Sbjct: 559 LEIALKKAEDASFAKTRFLNNMSHDIRTPMNAILGYAQLMEDE-LKEKDLPEISEYLKKL 617

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +SG  LL++IN +LD++RIE+GR E+ E+   + DI +    +    A++KNI +   I
Sbjct: 618 QQSGNLLLSIINNVLDMARIESGRMEIDENYGMIEDIWQTLFEIFDDEAKKKNIALHYTI 677

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNG 409
           +     +  D   ++++ +N+LSN +K+T  GG V + +      G         + D G
Sbjct: 678 NVEHEHILTDVTKVKEIFVNILSNTMKYTPSGGSVMINIDELPCSGPGYMIVRTRVSDTG 737

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+++  +  +  +F +     KS   G GLG+ I +  +   GG   + S+L +G    
Sbjct: 738 IGMSQEYLTNIFEAFTRERNTTKSKIAGTGLGMSIVKKYVELLGGTIDVESELGKGSTFT 797

Query: 470 AIL 472
             L
Sbjct: 798 VTL 800


>gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1223

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 604 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 663

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 664 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 719

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 720 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 778

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 779 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 838

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 839 LVTLMGGRMWVESDVGKGSVFYFT 862


>gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      +  R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 266 RVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 381

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 438

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 439 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494

Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
           S+  +G    A+LP     ++  P  +  + +
Sbjct: 495 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 526


>gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1013

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 17/237 (7%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+NAILGF ++++            + Y+  I  SG+ LL LIN+I
Sbjct: 531 KSEFLANMSHEIRTPMNAILGFCDLLKDRI----TEPQTRGYVDLISASGKTLLELINDI 586

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDLS+IEAG+ EL+   + L ++++E   +   +A +KN+ +  +I  ++  ++  DE  
Sbjct: 587 LDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIR 646

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGE 416
           +RQ++ N++ NA+KFT   G V ++V   +                +S++D+G GIA+ +
Sbjct: 647 LRQILFNVVGNALKFTEQ-GYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQ 705

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +  +F Q          G GLGL I + +     G+  ++S++ +G     I P
Sbjct: 706 QIRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQSEVGKGTIFKFIFP 762


>gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 614

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A+ SHEL+TP+ A+ GF+E +    +   + +T +E++  ++R   
Sbjct: 363 RRLE---KVRSDFIANASHELKTPVTALKGFTETLLDGAL--EDEDTAREFVEIMNREAN 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSL 358
            L  LIN+ILDL++IE  +       + L  ++ E +  L++ A E  +E+    D  + 
Sbjct: 418 RLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVHYDNDLEAG 477

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGE 416
                +E  ++Q++ NL++NA+K+    GG+V ++   T       ++I+DNG GI + +
Sbjct: 478 IRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDED 537

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           IP +   F +      +A  G GLGL I ++++A+  G+  + S+L EG      LP 
Sbjct: 538 IPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPK 595


>gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
 gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
          Length = 936

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 24/366 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182
           L+      P  L  YK    L+A  +  L   +    VF      P+    +  Q + + 
Sbjct: 156 LMIELNNHPLELARYKILLSLVATGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236
            +    +             I   + + +   L  +   +    +L       +      
Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275

Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R +A   N +KS FLA++SHELRTPLN+I GF  ++  +      +     Y+  I 
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S  HLL LIN++LD S+I+AG+ EL  +   L + + + + ML   A +K+I +     
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
            ++   V  D    +Q++ NL+SNA+KFT   G + V V            + S++D+G 
Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465
           G++  +   +  SF QG  ++     G GLGL I++ ++    GQ             +G
Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMRGQIGFEDNQERAPTEKG 511

Query: 466 VEVIAI 471
                 
Sbjct: 512 STFWFT 517


>gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1015

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I   +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 628 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 687

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L   +++    L+L+
Sbjct: 688 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 743

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +  ++++       +  V  ++  + Q+I+NL++NA+KFT+ G    +  G+   G+  
Sbjct: 744 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 800

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI + +  ++   F +      S  QG GLGL I ++++ + GG   + S+
Sbjct: 801 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 856

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 857 EGKGSTFWFSLP 868


>gi|13591555|dbj|BAB40947.1| histidine kinase [Magnaporthe grisea]
          Length = 1307

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   + + R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 754 DTDLTQY----QREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNA 809

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A +K +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 810 LKTLAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868

Query: 395 WTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             +              + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 869 KGNDVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKR 928

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG   ++S+  +G      
Sbjct: 929 LVNLMGGDVWVKSQYGKGSSFYFT 952


>gi|262381160|ref|ZP_06074298.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
 gi|262296337|gb|EEY84267.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
          Length = 795

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + +  F     IL         + E E  + L  +  + A+  N AKS FL+ MSH++RT
Sbjct: 239 LRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRT 298

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G + +  +      + E   + +  I  S + LLNLINE+LD+S++E+G   L+
Sbjct: 299 PMNAIIGMTTIASMHI---DDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLT 355

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +    + ++++  I M+Q    +K  +            +  D + ++QV+LNLLSNA+K
Sbjct: 356 DEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQVKHEKLIGDVQRIQQVLLNLLSNAIK 415

Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +T   G++ + +              +++ DNG GI    +  V   F +   A     Q
Sbjct: 416 YTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQ 475

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G GLG+ I+++I     G+  + S+  +G      +          ED+H
Sbjct: 476 GTGLGMAISRNIAHMMNGEIQVESEYGKGSVFTFTMQLKLQDQGCFEDDH 525


>gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 894

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 15/353 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G        +       +A++  A +   +   V        VA   + +       I+ 
Sbjct: 189 GPIASFQSIMNNRLEAELAVARQATTKAAILQTVLAVIIICAVAGLIRILFRQVTSPINQ 248

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRA 242
                   SF       +   ++++       + L       + + + A+      ++ A
Sbjct: 249 YTERLKVFSFRDEKFSLVPDGSLELRMLAQTFNALSNSFQEELVKRKKAEETMKAAKEEA 308

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKS FLA MSHE+RTPL+ I+G+  ++E   +     E   EY+ ++  + ++LL
Sbjct: 309 ETANKAKSEFLAQMSHEIRTPLHTIIGYQYLLENTFL----EEKQTEYVRNLGLASKNLL 364

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            +INEILD S++EA +  L      L  ++ +   ML++  + K ++    I P +   +
Sbjct: 365 EIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKKLQFNFTIKPDVPRYL 424

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIP 418
             D   ++QVILNLLSN +KFT  G  ++ V +     R       + D G GI + +I 
Sbjct: 425 KGDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCFHVADTGIGIPQRQIE 484

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   F QG  +      G GLGL I++ I+   GG   ++S + EG      
Sbjct: 485 QLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKSVVGEGSTFSFT 537


>gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2]
          Length = 912

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/313 (31%), Positives = 173/313 (55%), Gaps = 9/313 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 365 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 424

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 425 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 481

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 482 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 541

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 542 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 599

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV-- 468
           GIAE ++  +   F +GS  ++    G+GLGLPI + ++   GGQ  + S+L +G +   
Sbjct: 600 GIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKI 659

Query: 469 IAILPNTRVLNFI 481
              LP+  V++ I
Sbjct: 660 KFYLPSKEVVHPI 672


>gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
 gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
          Length = 986

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 142/252 (56%), Gaps = 9/252 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E  + AE  N AKS FL++MSH++RTP+NAI+GF+ +         + +  ++
Sbjct: 455 KMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKKRVQD 511

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL +++ +   ++  +   K +E
Sbjct: 512 YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIHAKQLE 571

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403
           ++   +D +   V+ D+  + QV+LNLLSNAVKFT  GG V V +              I
Sbjct: 572 LYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCHGTQKGSELYEI 631

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KDNG G+++  +  + + F +   +  S  QG GLG+ I ++I+   GG   ++++  
Sbjct: 632 RVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQD 691

Query: 464 EGVEVIAILPNT 475
           +G E I  LP  
Sbjct: 692 KGTEFIVRLPFR 703


>gi|91777004|ref|YP_546760.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91710991|gb|ABE50919.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 713

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 172/422 (40%), Gaps = 21/422 (4%)

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
              +  +  +W  +T         + ++    +       +     +V Q+     + L+
Sbjct: 24  LELEQAVIRIWLGMTFLS----FLVYREFTAPNPISDNFPLAIPMTVVFQVLSFTLFGLI 79

Query: 125 TLVEPGTWTPEYLTIYKSATL-LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
                          +    L  + ++++     +L        F        + ++   
Sbjct: 80  LFTTKHAALRRLSGAWLDIGLPTMFMAMTGELGVILVGVYLWVTFGNGFRFGKKYLLHSQ 139

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            L +           F+       +   + +++       LI  +E       E R++AE
Sbjct: 140 ALSLIGFLYTINVNPFWLEHKAISYSLLLMLVALPLYVATLITRIE-------EARQKAE 192

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AK+RF+A+MSHE+RTPLN I+G S ++    +    N    E +  +  S + LL 
Sbjct: 193 VANHAKTRFVANMSHEIRTPLNGIIGISTLLRNTQL----NPEQDELLRTLESSSKLLLA 248

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            +N +LD S+IE  + ++ ++ +SL D+  + I + + +A  K I + + I      V +
Sbjct: 249 QLNNVLDFSKIEQEKMQVEKTELSLRDLAEQTIEVFKGQALHKRIRLEKDIRIDDVRVKS 308

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY-ISIKDNGPGIAEGEIPT 419
           D   ++Q++ NL+ NAVKFT   G V ++V     T+  G Y I + D G GI++     
Sbjct: 309 DPYILQQILANLVGNAVKFTEQ-GAVTLSVHALETTADHGVYRIEVVDTGIGISDEHRER 367

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  SF Q  I+      G GLGL IA+ ++   G +  + S L  G      L    V  
Sbjct: 368 IFESFTQADISTTRKFGGSGLGLTIAKRLVEALGSELHLSSSLNAGSRFWFDLSLDIVAP 427

Query: 480 FI 481
             
Sbjct: 428 AP 429


>gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9]
 gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9]
          Length = 680

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  KS FLA+MSHE+RTP+N I+G S +++   M     +  KEYI  ++ S   LL+LI
Sbjct: 74  NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----PKDQKEYIQMLNISSLSLLDLI 129

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILD S+IEAGR EL  ++++L ++ +E   +  ++A EK+I     ID  +   +  D
Sbjct: 130 NDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGD 189

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              +RQV+ NL+SNA+KFT   G VH+     +           + D+G G++  +   V
Sbjct: 190 ATQLRQVLNNLVSNAIKFTHT-GYVHLHTQLETDTDTETTIRFEVIDSGIGVSADKHEAV 248

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLN 479
              F Q   +      G GLGL I + I+   GG+  I S++ +G      +   + VL 
Sbjct: 249 FDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKISSEVDKGSTFYFTITFEKNVLV 308

Query: 480 FIPEDNHES 488
               ++ ++
Sbjct: 309 SASLEDSKA 317


>gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 873

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 8/274 (2%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             ++    +     LS        + E + ++    +  + AE  N AKS FLA+MSHE+
Sbjct: 228 VMLSVSAVRDEWGRLSRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEI 287

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+G  +++    +        ++Y+  I +    LL ++N++LD S+IEAG+ +
Sbjct: 288 RTPLNAIIGLGQLLLDSGLDS----RQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQ 343

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNA 379
           L      +  ++ +   +  L A+ K + ++  +DP    V   D   + QV+ NL+ NA
Sbjct: 344 LDTVDFRIEAVLDQLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNA 403

Query: 380 VKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           VKFT  G   + +              S++D G G+ +  I  +  SF Q   +I     
Sbjct: 404 VKFTERGFVELRIRALREDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYG 463

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G GLGL I++ +    GG   +RS+L  G     
Sbjct: 464 GTGLGLSISRQLAQLMGGDIRVRSRLGIGSVFRF 497


>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 828

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E ++RAE  +  KS FLA+MSHE+RTP+NA++GF++++    +     
Sbjct: 255 ITERKRVEQALIEAKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDTDL----T 310

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y     +SG+ LL+L+N+ILD S+IEAG     +       +  +   +++ R +
Sbjct: 311 DDQRDYAMTAKKSGESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVIRPRVE 370

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +EI   +   + S V  D    RQV++NL+SNA KFT   G + +++   +     I
Sbjct: 371 SKPVEILCHVGADVPSFVKGDPGRYRQVLVNLMSNATKFT-ESGEIELSLDVEAEEADRI 429

Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +++D   GI E ++  +   F Q   ++     G GLGL + + +     G   + 
Sbjct: 430 KFHATVRDTAMGIPEDKLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVE 489

Query: 460 SKLREGVEVIAI 471
           S++ +G      
Sbjct: 490 SEVNKGSIFHFT 501


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +     + E  KE    I+     +  
Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 421

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG  EL    + L+  +   I      A+EK IE+  +       +  
Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAF 481

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T  GG V + +   SG G  I ++D+G GI E ++P V   
Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL IA++I+  H G   + SKL EG      LP  
Sbjct: 541 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 1792

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/500 (22%), Positives = 197/500 (39%), Gaps = 31/500 (6%)

Query: 22   HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS----L 77
             L  E  ++ D+ +  +      L     ++ +  +L++ +                  L
Sbjct: 889  RLTTERGAEQDWLKTNLARFTNLLQGQRDLVTVGRMLLSELAELIGAQNGVIYQVEGDEL 948

Query: 78   ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
              L+ YA +    +++   +  +G+       +L+  +   +      L +    T   L
Sbjct: 949  TLLSAYADDGDHPRRIAFGEGLVGQCARDGRRILISDLPPNVLPIRSGLFKAAPRTAIVL 1008

Query: 138  TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             I         + +++L+        FL      + +   +I      +  L      A 
Sbjct: 1009 PILFEGEARAVIELASLNPLTELQISFLEQLTASIGIVLNSIAVSMQTEGLLGQSQQLAT 1068

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKS 250
                  T  L ++N +I     + ++   E+E      ++ R+  EE        +  KS
Sbjct: 1069 ELLARQTE-LQQTNEQIELKAQQLEERNNEVEAKNQQIEQARRALEEKAGELALTSKYKS 1127

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA+MSHELRTPLN+IL   + +       L++    E    IH +G  LLNLI++ILD
Sbjct: 1128 EFLANMSHELRTPLNSILILGQQLSDNVEHNLSD-RQVECARTIHAAGSDLLNLISDILD 1186

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            LS+IE+G   +    IS   +++      +  A+ + +    +    LS  +  D K ++
Sbjct: 1187 LSKIESGTVSIDAEEISFAHLLQMIARPFRHEAESRGLSFDVEATEGLSGHIVTDVKRLQ 1246

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGE 416
            Q++ NLLSNA KFTA GG V + V   +                    + D G GI+  +
Sbjct: 1247 QILKNLLSNAFKFTAAGG-VSLKVAPAASGWSADNLSLARAKGVVAFKVADTGIGISAEK 1305

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
               +  +F Q          G GLGL I++ +    GG+  +RS   EG      LP   
Sbjct: 1306 QKIIFEAFQQADAGTSRKYGGTGLGLAISRDLAQLLGGEIQLRSVPGEGSVFTLYLPLAY 1365

Query: 477  V-LNFIPEDNHESTQYKCYA 495
              +   P   H+  + + +A
Sbjct: 1366 TNVEVAPRAAHD--EGRTFA 1383


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 9/286 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G +   LSF T       + ++ ++   A++  +  E  + +    + ++ AEE +  KS
Sbjct: 437 GRVLGTLSFGTRTRSSFSEDDLSLMKAVADQVAIAIERNLMEESLRQAKQAAEEASRTKS 496

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RF+A+MSHELRTP+  +LG  ++         +     +YI    RS + LL ++N++LD
Sbjct: 497 RFVANMSHELRTPMTGVLGMLDLALQSC----DETERTDYIETAQRSARSLLRILNDVLD 552

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           L+++EAG++ L     SL   + + + ++    + K +E+  +I+  L   V  D+  +R
Sbjct: 553 LAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELALQIEDHLPDHVLGDQVRLR 612

Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425
           QV+ NL+ NAVKFT  G  R+ +  G  S +G      S++D G GI + +   +  SF 
Sbjct: 613 QVLTNLIGNAVKFTERGSVRIALRAGGRSPQGPMEFRFSVRDTGIGIPQDKRHLLFVSFS 672

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q   +   +  G GLGL I++ I+   GG   +  +  EG      
Sbjct: 673 QLDDSNTRSYGGTGLGLAISKEIVERMGGSIALEGEKGEGSCFSFT 718


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
          Length = 1152

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 23/312 (7%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--------------KRAEEENLAK 249
           +  L +S++++   QAE +    +L     + ++ +              +  E+ +  K
Sbjct: 425 SRALKESHLRLEQQQAELEQTNVQLSEQARILEQQKDDLNRSAADIALKAQELEQASRYK 484

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN+ L  ++++     G L  E  K +   I  SG  LL LIN+IL
Sbjct: 485 SDFLANMSHELRTPLNSSLILAKLLADNRDGNLTEEQVK-FARTIQSSGNDLLALINDIL 543

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368
           DLS+IEAG+ +++   +S   +  +   M +  A EK +    +   +L  ++ +D + +
Sbjct: 544 DLSKIEAGQMDINAEPVSFRRLASDLTRMFEPLAGEKGLTFRVEAHDTLPDLFDSDRQRL 603

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NLLSNA+KFT   G V + +   +    + ++ D G GI+  +  ++  +F Q  
Sbjct: 604 EQVLKNLLSNALKFTER-GSVVLRMSA-ANNKVHFAVSDTGIGISAEQQQSIFEAFRQAD 661

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN----TRVLN-FIPE 483
             I     G GLGL I++ +    GG   ++S+  EG     ILP      +V    +P 
Sbjct: 662 STISRKYGGTGLGLSISRELSRLLGGHIELKSEPDEGSIFTLILPLIYDPQQVAPREVPR 721

Query: 484 DNHESTQYKCYA 495
              E    + +A
Sbjct: 722 SAPEPQIIETFA 733


>gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 660

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      ++ R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMH 381

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 382 RRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDE 438

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494

Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
           S+  +G    A+LP     +N  P  +  + +
Sbjct: 495 SEFDKGSLFWAVLPCQFESVNSEPTSSRRNNE 526


>gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
 gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
          Length = 419

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F+ + SHEL+TP+ A+ GFSE +    M   + E  K+++  +     
Sbjct: 189 RRLE---KVRTDFVTNASHELKTPVTALKGFSETLLDGAM--EDKEVLKQFLEIMLAESS 243

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N+IL+LS++E  +  L    I+L + V     +++ +A EK +++    + +L 
Sbjct: 244 RLDFLVNDILELSKLEQKQVPLKIEEINLTEAVISTFQLVKQKADEKKMKLNIIEEDNL- 302

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   ++Q++ NL++NAV +T   G V VT+         I + DNG GI E E   
Sbjct: 303 FITGDSSRLKQILANLINNAVVYTQESGEVEVTIK-KENNFAVIKVSDNGIGIPEDEQDR 361

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   A      G GLGL I + ++ N  G   + SKL  G   I  LP
Sbjct: 362 IFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGFITVESKLGLGTTFIVKLP 415


>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 882

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +
Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E + DI  S   LL L+N+ILDLS+IE+GR ELS     + ++V + +I+ 
Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D ++   V  D+  ++Q+I NL+SNAVKFT   G + V V +   
Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEA 528

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKD+G GI   ++ T+   F Q    +     G GLGL I + +++  G
Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+ +  S    G      +
Sbjct: 589 GKLVATSTKGVGTCFGFSI 607


>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 1096

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 5/366 (1%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            WT++   +          +  +  L+ A++++ L      +A  L+     ++ +  A+
Sbjct: 312 AWTVVAEADRDAAFANSSQLRNALFLIGAVAVTGLGLLSFVFANALTRPVRRLSEAASAV 371

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +  + +           +  +     + ++    L    +K+   AEL+       E  
Sbjct: 372 ATGSLNEALPEYERPVEYARLSRAVNQMRRALRDQLDMIRDKN---AELQENLRQIGEKN 428

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            + EE +  K RFLA+ SHELRTPLN I+G  E +E   MG +        +  I  S +
Sbjct: 429 AKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDML-PAQASQLRLITFSAR 487

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L++++LD+ RI  GR  L    +     +R  + +LQ   Q    +    +   L 
Sbjct: 488 RLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVDLPGDLP 547

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           ++ AD     Q++ NLLSNAVK+   G  V++T          ++I+D+GPGIA   +  
Sbjct: 548 ALTADPVRFEQILFNLLSNAVKYGG-GSEVYITAEERPSGHVALAIRDHGPGIAADSMER 606

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +     Q          G GLGL IA+ +     G   + S   EG E   +LP + +  
Sbjct: 607 IFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSSTPGEGSEFRVVLPLSDLPA 666

Query: 480 FIPEDN 485
             P + 
Sbjct: 667 VAPLEE 672


>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 636

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 143/330 (43%), Gaps = 5/330 (1%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I ++  A+  F   +             ++        +  S    LA        +   
Sbjct: 21  ITMAGRAVMAFSAGFGGAYGLLLGSNPETSGYDPHAFAVGASFLFALACLALAVQTMRLR 80

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             +  +++L+   E    +   +         R+ A+  N AKSR LA  SHE+RTPLN 
Sbjct: 81  RMRGRLRLLTASQEPPPDLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNG 140

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S ++    +    +     Y   +  SG+ LL L +E+LD +RIEAG+ EL     
Sbjct: 141 IIGMSRLLLDTPL----SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPF 196

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++ + I +L  RAQ + +EI   ID  L   +  D   +RQV+LNL  NA+KFT  
Sbjct: 197 VLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIGDAARLRQVLLNLCGNAIKFTET 256

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG   +        G  I ++D G GIA      +   F Q    I     G GLGL I+
Sbjct: 257 GGVALIVERGDQSDGLRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSIS 316

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             I++  GG+  + SK  EG      LP +
Sbjct: 317 DRIVSVMGGRIALESKPGEGSTFTITLPLS 346


>gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 536

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 144/275 (52%), Gaps = 10/275 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++T     S ++++  + E      ELE  +    + +++AE+    K  FLA+MSHE+R
Sbjct: 113 FVTSAKVDSFIQLVRNEREIKRKNLELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIR 172

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N I+G + +++  T+ P + E     +     S   LL +IN+ILDLS+IE+G++++
Sbjct: 173 TPINGIIGLASLLKKTTLSP-DQEEMIRLLEI---SSDSLLGVINDILDLSKIESGKFKI 228

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
           + +   +I    +   +L++RA EK +++    DP+L + + AD   + Q+++NL+ NA+
Sbjct: 229 NRAETDVIKTCTDVTNLLRIRAMEKKLDLITDYDPALPNLIMADSLRLNQILMNLIGNAI 288

Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFTA  G V + V     +G       S+ D G GIA+ +I  +  +F Q          
Sbjct: 289 KFTAS-GSVTLKVEALDKKGNNIQVRFSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFG 347

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I +++    GG   + S+   G      
Sbjct: 348 GTGLGLSIVKNLAELKGGILEVFSEEGHGSTFCFT 382


>gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 636

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 142/330 (43%), Gaps = 5/330 (1%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I ++  A+  F   +             ++        +  S    LA        +   
Sbjct: 21  ITMAGRAVMAFSAGFGGAYGLLLGSNPETSGYDPHAFAVGASFLFALACLALAVQTMRLR 80

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             +  +++L+   E    +   +         R+ A+  N AKSR LA  SHE+RTPLN 
Sbjct: 81  RMRGRLRLLTASQEPPPDLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNG 140

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S ++    +    +     Y   +  SG+ LL L +E+LD +RIEAG+ EL     
Sbjct: 141 IIGMSRLLLDTPL----SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPF 196

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++ + I +L  RAQ + +EI   ID  L   +  D   +RQV+LNL  NA+KFT  
Sbjct: 197 VLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIVDAARLRQVLLNLCGNAIKFTET 256

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG   +           I ++D G GIA      +   F Q    I     G GLGL I+
Sbjct: 257 GGVALIVERGDQSGELRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSIS 316

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             I+A  GG+  + SK  EG      LP +
Sbjct: 317 DRIVAAMGGRIALESKPGEGSTFTITLPLS 346


>gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 576

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 142/277 (51%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V ++V   S     
Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVSFAQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VIEGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL + + +   HGG   + S    G   +  LP   
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565


>gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 660

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      ++ R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMH 381

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDE 438

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494

Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
           S+  +G    A+LP     +N  P  +  + +
Sbjct: 495 SEFDKGSLFWAVLPCQFESVNSEPTSSRRNNE 526


>gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 633

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L   +  I +     +    E + A +   +TR+ AE  N AKS FLA MSHELRTP+N 
Sbjct: 223 LGDLSRHINNLAEGLNQASREQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   M         EY      S +HLL +IN+ILD SRIE    EL     
Sbjct: 283 VLGMLQLLETTEMTEEQT----EYAALASESTEHLLKVINDILDFSRIERAALELEHIPF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
           +L D++  C    Q  AQ++ + +   +   L    V  D   +RQ+++NL+ NA+KFT 
Sbjct: 339 NLADLINSCAQAFQHSAQQRGLTLTLGVAQGLEALKVQGDPTRIRQILVNLIGNALKFT- 397

Query: 385 IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V V   W     + +     ++D+G GI+   +  +  +F Q   +I     G GL
Sbjct: 398 EHGTVSVESDWQPLDHELVWFTCIVRDSGIGISTERLERMFDAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GLPIA+++    GG     S+   G      +P     + +P    ++
Sbjct: 458 GLPIARTLAERMGGTLRAESEEGLGSVFTLEIPLAIDQHSLPAVAADA 505


>gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1039

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I   +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 652 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 711

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L   +++    L+L+
Sbjct: 712 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 767

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +  ++++       +  V  ++  + Q+I+NL++NA+KFT+ G    +  G+   G+  
Sbjct: 768 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 824

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI + +  ++   F +      S  QG GLGL I ++++ + GG   + S+
Sbjct: 825 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 880

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 881 EGKGSTFWFSLP 892


>gi|317473351|ref|ZP_07932646.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899187|gb|EFV21206.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 852

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 15/266 (5%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            V     D+ +++A + + AKS FLA+MSH++RTP+NAI G + +       P   +  K
Sbjct: 325 RVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAHIDDP---KQVK 381

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I  S +HLL LIN++LD+S+IE+G+  L+   ISL ++V   + ++Q + + K  
Sbjct: 382 NCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQ 441

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401
                I+   +  VW D   + Q++LNLLSNA K+T   G + + +   +          
Sbjct: 442 SFDVHIENIFTENVWCDGIRLNQILLNLLSNATKYTPEKGSIRLFISEENSPRGEDYVRL 501

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I+++DNG G++   +  +  S+ +         +G GLG+ I + I+    G   ++S+
Sbjct: 502 HINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSE 561

Query: 462 LREGVEVIAIL-----PNTRVLNFIP 482
             +G E    L     P   V   +P
Sbjct: 562 PNKGTEFHIKLDFEKAPALNVNMVLP 587


>gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 596

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 144/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++ + +    + A+E  +E+  +++        D   M QV++NL+ NA++ T     
Sbjct: 444 APLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 QGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  HGG+  ++S+L +G + I  LP  +
Sbjct: 564 IVKNIVEAHGGKISVKSELGKGSDFIITLPLEK 596


>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 718

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 25/333 (7%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V +        L    + +   +     G+L  +       T +   S +   +   E  
Sbjct: 119 VVVPTLTGADTLVLHVLATNSRIRGMFVGILPGSHLSAEVSTLNALSSILINTAYAVENS 178

Query: 223 DLIAELE-----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +L   L+              +  +E   +AE    AKS FLA+MSHE+RTP+N ++G +
Sbjct: 179 ELYDMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLA 238

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +    +E  + Y+  +    ++LL +INEILD+S++EAG   L      L   
Sbjct: 239 KLLMETPL----DEVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRF 294

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +   +    LR Q+K + +  + D  L  +   D   +RQV+ NLL NA+KFT   G + 
Sbjct: 295 LDRSLQPFVLRGQKKGVRVHLEADSGLPELMVGDPVRLRQVLANLLGNALKFTQQ-GSIT 353

Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +T   T           S+ D G GIA   +  +   F Q   +      G GLGL I++
Sbjct: 354 LTAALTGSGENRVALKFSVADTGIGIAAEAMEVIFEKFSQADSSTTRLYGGTGLGLSISK 413

Query: 447 SIMANHGGQFLIRSKLREGVEVIA----ILPNT 475
           S++   GG+  ++S L EG          LP  
Sbjct: 414 SLVELMGGELSVQSTLGEGSVFSFSIEMSLPKA 446


>gi|71281799|ref|YP_269191.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147539|gb|AAZ28012.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 784

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 24/394 (6%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTW---TPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
               +G + I      +      T          +     L+I   +  L    L     
Sbjct: 146 NRRQLGTLIIATNLATIHARLWQTGFNILLNQTLLVVLIMLVIMFILQRLITRHLESMAG 205

Query: 165 LSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
            S       L     +S    +    L  ++         I + + +   +  + +  +D
Sbjct: 206 YSKAIGDGDLEAPLTLSRRQPNFPDELNQLVNALNDMRLAIRHDINRREEEKQALRYNRD 265

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   +E       + ++ AEE N AKS+FLA+MSHE+RTP+N +LG  ++++   +   
Sbjct: 266 QLQQMVERRTMSLQQAKEIAEEANKAKSQFLATMSHEIRTPMNGMLGMIQLLQNNEL--- 322

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +     +  +H S + LL   + +L  +++E G Y  SES  SL +++   I ++Q +
Sbjct: 323 -TDPQSHRVKILHDSTEALLETFDHVLQFAQLEEGGYVCSESFFSLDELLHNLISLMQPK 381

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSG 398
           A EK++++      +          +RQ++ NLL+NA+KFT   G + + V         
Sbjct: 382 ADEKHLQLKLDTPVTGDCYHDAAGSLRQILTNLLANAIKFTDQ-GEILLRVSHLEQSEHQ 440

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                SI+D+G GI       +   F Q   +I     G GLGL I + +    GGQ  +
Sbjct: 441 HRLRFSIQDSGIGIEPALQQHIFERFTQADESITRRFGGTGLGLSICRQLSQEMGGQIGV 500

Query: 459 RSKLREGVEVIA----------ILPNTRVLNFIP 482
            S + +G                     VL  +P
Sbjct: 501 ESTVGQGSTFWVEVKLKVAKASEFKAKAVLPELP 534


>gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
 gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
          Length = 896

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 15/283 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L  +N ++ S   E +    +LE+ KS  +E        +  KS FLA+MSHELRTP
Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++       L+++   E    IH SG+ LL LIN+ILDLS++EAG+ ++  
Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
            A ++ D+           A +KN+E+       +  + + D K + Q+I NLLSNA KF
Sbjct: 570 EATNISDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 629

Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T   G V +                       IS+KD G GIA  +   +  +F Q   A
Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGA 688

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I +      GG   + S L EG      +P
Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|94264862|ref|ZP_01288637.1| PAS [delta proteobacterium MLMS-1]
 gi|93454683|gb|EAT04948.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 20/282 (7%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + +   +         I+  +  +    E +  AE  NLAKS FLA+MSHE+RTP+NAI+
Sbjct: 457 RDSSGRIREIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSHEIRTPMNAII 516

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G SE+     +        ++ +  IH S Q LL +IN+ILD S+IEAG  +L+      
Sbjct: 517 GLSELTLQGELAA----EQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHLQLAPHPFRP 572

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
             +V     + +  A  K +E+   +DP +  V   DE  + Q+  NLL+NA+KFT   G
Sbjct: 573 ARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLANALKFTRK-G 631

Query: 388 RVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           RV + +               +  G   ++ D G GI + +   +   F Q         
Sbjct: 632 RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQADDTTTRKY 691

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475
            G GLGL I+  ++   GG+  + S+   G        LP  
Sbjct: 692 GGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLPQA 733


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  +LV     G       L E        L +     +L  + ++
Sbjct: 1197 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1256

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210
            + + F      FL+    ++A S   I      ++ L+                    K+
Sbjct: 1257 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1316

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1317 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1376

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L      E+   IH +G  LL LIN+ILDLS+++AG+ 
Sbjct: 1377 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1435

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +  + EK +++  ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1436 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1495

Query: 379  AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G   + +                               S+ D G GIA  ++ 
Sbjct: 1496 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1555

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1556 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611


>gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062]
 gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062]
          Length = 767

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 9/329 (2%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L  A F +F      ++    +   V +   + +          +   +F + + +    
Sbjct: 441 LLGAPFTTFLADESHIAALDYLDGLVANGVSSVLNDGREIICQTLDGDIFPTFLSMGRVS 500

Query: 219 AEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  + L       I + + A+      R +AEE N  KS +L  +SHE+RTPLNA++GFS
Sbjct: 501 SANEQLFCAVLRDITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFS 560

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV++ E  G L N  YKEY  DIHRS  H+L LIN++LDL++IEAG+ +L+  A+S  DI
Sbjct: 561 EVMQEERFGELGNVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADI 620

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + EC+ +LQ +A E+ + I      S+  + AD K +RQ+ LNLLSNA+KF   GG+V V
Sbjct: 621 INECVALLQPQANEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIV 680

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           ++        ++ ++D G G+++ ++   L  F + + +     +G GLGLP+ ++++  
Sbjct: 681 SLVLDPNGEVHLRVRDTGHGMSKADLEAALQPFRRLNASAS--TEGSGLGLPLTKALVEA 738

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           +   F I S+  EG       P  RVL  
Sbjct: 739 NRASFSINSEEDEGTLAEVTFPPQRVLAE 767


>gi|167745965|ref|ZP_02418092.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662]
 gi|167654480|gb|EDR98609.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662]
          Length = 852

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 15/266 (5%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            V     D+ +++A + + AKS FLA+MSH++RTP+NAI G + +       P   +  K
Sbjct: 325 RVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAHIDDP---KQVK 381

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I  S +HLL LIN++LD+S+IE+G+  L+   ISL ++V   + ++Q + + K  
Sbjct: 382 NCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQ 441

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401
                I+   +  VW D   + Q++LNLLSNA K+T   G + + +   +          
Sbjct: 442 SFDVHIENIFTENVWCDGVRLNQILLNLLSNATKYTPEKGSIRLFICEENSPRGEDYVRL 501

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I+++DNG G++   +  +  S+ +         +G GLG+ I + I+    G   ++S+
Sbjct: 502 HINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSE 561

Query: 462 LREGVEVIAIL-----PNTRVLNFIP 482
             +G E    L     P   V   +P
Sbjct: 562 PNKGTEFHIKLDFEKAPALNVNMVLP 587


>gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 599

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E R      +  +  F+A++SHELRTP++ + G+SE I  +  G  + E  KE+ 
Sbjct: 355 RDMTEERRH-----DKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAG--SEEDKKEFA 407

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     +  L+NE+LDL+R+EAG  EL   A+ L       +   Q  A+++ + + 
Sbjct: 408 KIIYDESLRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKDEGVALR 467

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                   +   D   + QV+ NL+ NA++ T   GRV V V  ++  G    + D G G
Sbjct: 468 LDHVEDGYTNSFDPDRIEQVLTNLIHNAIRHTGENGRVTVKV-RSNEYGVKFDVIDTGSG 526

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E ++P V   F +   A   A  G GLGL IA++I+  H GQ  + SK+ EG      
Sbjct: 527 IPEEDLPYVFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDEGTTFSFF 586

Query: 472 LP 473
           +P
Sbjct: 587 IP 588


>gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 509

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 154/296 (52%), Gaps = 4/296 (1%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             +    ++      + +  L    +   + A  E  + ++ E +K AE  N AKS FLA
Sbjct: 204 VLIGVLFFVIAGSVSAAILRLQLLRQATAIAAVTER-ERMAVEGQKAAEAANQAKSEFLA 262

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSHELRTPLNAI+GFSE++     GPL       Y  DI +SG+HLLN+I  ILDL+  
Sbjct: 263 MMSHELRTPLNAIIGFSELMASGLHGPL-PPRQHGYAKDIQQSGRHLLNVIGNILDLAEA 321

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E+ +  L E  I L  ++  C+ ++  +A E  +++   + P+   +  D   +RQ +LN
Sbjct: 322 ESKQINLFEVDIELEAVIEPCLRLIAPQASEGRVQVTATL-PTGVRLLCDVTKLRQTLLN 380

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT  GG V V+V         I++ D G GI   ++P +L  F Q    +  +
Sbjct: 381 LLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTGIGIRPEDVPRILKRFEQVESQMHRS 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHEST 489
            +G GLGLP+A+++   HGG   + S    G     ILP TRVL    P D   S 
Sbjct: 441 REGAGLGLPLAKALTEAHGGVLEVTSDFGHGTTARIILPATRVLVQPDPIDAAASP 496


>gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1788

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 16/296 (5%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              +  ++    +S    ++      + I++++  +      ++ A+  N AKS FLA+MS
Sbjct: 887  LVWERVSISAVRSADGQITHYLGIKEDISQMKEDQERLAHAKESADLANRAKSSFLANMS 946

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HE+RTP+NAI+G   + +  T+        ++Y+G I  +   LL +IN+ILD+S+IEAG
Sbjct: 947  HEIRTPINAIVGMCHLAQRMTV----EPKLRDYLGHIQVAADTLLGIINDILDVSKIEAG 1002

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            +    +    L +++   + +  L+AQ+KN+E+   ++P +   V  D   + Q++ NL+
Sbjct: 1003 KLHFEDIPFKLDELISRVMRLQGLKAQDKNVELVIDLEPQVPQTVVGDPLRISQILTNLV 1062

Query: 377  SNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            +NAVKFT  G  V  V +          Y  ++D+G G+ + ++  + T F QG  ++  
Sbjct: 1063 NNAVKFTEQGEVVLSVKLQGVFDGRVTLYFEVRDSGIGMEDAQLQRLFTPFQQGDDSMTR 1122

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILP------NTRVLNFI 481
               G GLGL I Q+++   GG   + S+L EG        LP        RV    
Sbjct: 1123 RYGGTGLGLSICQNLVKMMGGHLQVESRLSEGSRFYFTVSLPIHQAPALERVDQTS 1178


>gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
 gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
          Length = 612

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +S+ D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium
           sp. Marseille]
 gi|151282246|gb|ABR90656.1| sensory box histidine kinase/response regulator [Janthinobacterium
           sp. Marseille]
          Length = 702

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +L  ++          +  AE  N AKS FLA MSHE+RTP+N +LG  ++     +  
Sbjct: 305 RNLEHQVVERTRDLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQL----ALAE 360

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++ T +E++     S + LL+++N+ILD S++E+G  +   +   L+  +   I ++  
Sbjct: 361 TSDRTQREHLETAQYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMAS 420

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           R+ + ++ +  +    +  +   D   +RQV+LNL++NA+KFT  GG V + V   +   
Sbjct: 421 RSCDASLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTEQGG-VTLKVALLNLNA 479

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+ D+G GIA      +  +F Q   +I     G GLGL I + I+   GG  
Sbjct: 480 GQARMRFSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSI 539

Query: 457 LIRSKLREGVEVIAIL 472
            + S   +G E    L
Sbjct: 540 GVHSAEGKGSEFWFEL 555


>gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 797

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 11/295 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
           A S     +  L +         +EK+  LI      +   +E   RA     A++ FLA
Sbjct: 242 AESRLKTYSEQLEQIVDSRTKELSEKNKQLIKSNHDLRVAKEEAVSRA----KARADFLA 297

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP N +LG   +   E +    +E  KE +   + SG  LL L+N+ILD+S++
Sbjct: 298 NMSHEIRTPFNGVLGMISLTLEEPL----SEKQKEQLNVAYSSGVALLELLNDILDISKV 353

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAG+  L   A  L   V +   +L   A  KN+ ++  IDP+    V+ D   +RQ++ 
Sbjct: 354 EAGKLTLENIAFDLRKTVEDVSRLLAQNAHAKNVALYTNIDPAFPERVYGDPTRIRQIVS 413

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL  NA+KFT   G V V++     +   I + D G GI    +  + + F QG   I  
Sbjct: 414 NLTGNAIKFTET-GSVTVSLSLLKNQSVEICVSDTGIGIEADRLEFIFSPFSQGDADITR 472

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
              G GLGL + + ++ + GG+  + S+   G   +  LP     N       ES
Sbjct: 473 KYGGTGLGLTLCRQLVTHMGGKIEVVSERGRGSSFMVTLPLLADHNTPSPKVDES 527


>gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969


>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N +KS FLA+MSHE+RTP+NAI+G  ++       P       +Y+  I  S   LL LI
Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLHDYLEKITGSAATLLTLI 468

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+  + +    L +I+ +   ++  +A EK +E+   +D      +  D
Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGD 528

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              + QV++NL SNA+KFT   G V ++              ++++D G G++  +I  +
Sbjct: 529 PHRLGQVLINLTSNAIKFTQQ-GEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERI 587

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q   A      G GLGL IA  ++   GG+  + S    G      
Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  +LV     G       L E        L +     +L  + ++
Sbjct: 1197 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1256

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210
            + + F      FL+    ++A S   I      ++ L+                    K+
Sbjct: 1257 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1316

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1317 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1376

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L      E+   IH +G  LL LIN+ILDLS+++AG+ 
Sbjct: 1377 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1435

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +  + EK +++  ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1436 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1495

Query: 379  AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G   + +                               S+ D G GIA  ++ 
Sbjct: 1496 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1555

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1556 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611


>gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 917

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 3/315 (0%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A    +          +   +    +        +  +  + +      +    ELE+A 
Sbjct: 604 AERLLSGSIGSASARVMVSSIIKGEALSFEGVMEILDATSRAIEYSRRLEQKSRELEMAT 663

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  +R +E +  K  F++ +SHELRTPL +I  F E++       L+ E  KE++ 
Sbjct: 664 DELRRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNP--ELDAEQRKEFLQ 721

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            + +  + L  LIN++LDLS+IE+G  E     + L  +V+E     +    +  +++  
Sbjct: 722 VVVKESERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQV 781

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           K     + +  D   + Q+++NLLSNA KFT    GRV V+V   S R   + ++DNGPG
Sbjct: 782 KAPEQPTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSARKLELRVQDNGPG 841

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+E E   +   F Q S       +G GLGL I + IM  H G   + S+   G   I  
Sbjct: 842 ISEAEQRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFICE 901

Query: 472 LPNTRVLNFIPEDNH 486
            P         ED  
Sbjct: 902 FPVGDRRAATGEDES 916


>gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 608

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      +I  +    + ++
Sbjct: 370 EKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAW--QDKAIAPRFIEVVQTETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L++S ++  +   + I   +L  + +NI   +KI      + 
Sbjct: 428 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELT-KSENITFVRKIPKEAIFIE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QV+ N++SNA+K++  GG++   V   +     +S+ D G GI +G++  V  
Sbjct: 487 IDKDKITQVLDNIISNAIKYSPQGGKITFRVRELAD-EIIVSVSDEGVGIPKGDLAKVFE 545

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 546 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLPLER 599


>gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 468

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 179/444 (40%), Gaps = 29/444 (6%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           L   +    L  LL A    +              L   A  +       N      + Y
Sbjct: 9   LLATAVFAILLTLLCALFVFYGVYRKQVIG----DLKADALVMKNMHIFDNISDLHPDAY 64

Query: 105 VWRI---WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
                   + V      + +             +   I+ +A   +        +  L  
Sbjct: 65  DLNPDTLRITVVNANGSVIFDSNADFSVMENHEDRPEIHMAAK--VGEGSGTRRSTTLDR 122

Query: 162 AVFLSFFPVVVALSTQAIMSMHV-------LDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +F     +      +              + +++ G+      F   +  +  K+ V  
Sbjct: 123 NLFYYAIRIDNGRILRIAREGDNIFALTQNMMMTVVGVFVLLFFFCIMMANYFTKNLVAP 182

Query: 215 LSCQAEKDDLIAELEVAKSL---SDETRKRAE---EENLAKSRFLASMSHELRTPLNAIL 268
           +   AE           K L    ++ R++ E   + +  +  F A++SHEL+TPL AI 
Sbjct: 183 IEQMAENLSEPGTQAAYKELVPFMNKIRQQHEDILKSSQVRQEFTANVSHELKTPLTAIS 242

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G++E+IE    G    E  + +  +IH++   LL LIN+I+ LS+++ G+ ++    + L
Sbjct: 243 GYAELIEHGMSG----ENTERFASEIHKNAARLLTLINDIIQLSQLDGGKKDVEYRDLDL 298

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             + REC+ MLQ+ AQ++N+ I  +   +   V+AD++ M ++I NL  NA+++    G 
Sbjct: 299 FPLARECVDMLQMNAQKQNVTIRVQGGEAP--VFADKQLMEELIYNLCDNAIRYNKKDGT 356

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V VT G       ++S+KD G GI+      V   F +   +   A  G GLGL I + I
Sbjct: 357 VTVTTGI-ENGHTFLSVKDTGIGISAEHQERVFERFYRVDKSRSKATGGTGLGLAIVKHI 415

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
           +A HG +  + S+  +G E+    
Sbjct: 416 VAQHGAKLTLESEQGKGTEIRVEF 439


>gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 729

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 4/261 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +K  L   +        E     E  +  K+ FLA+MSHELRTPL  ++G S  + 
Sbjct: 327 ELQQQKATLEQRVNERTQALREALSAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLL 386

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +GPL     +EY+  IH SG HLL LIN ILDLS  E GR +L  SA S+  +  +C
Sbjct: 387 RWPLGPLT-AKQREYLEIIHESGTHLLELINSILDLSEAELGRSQLHRSAFSIRQLCADC 445

Query: 336 IIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           + +++ +A    + +  +  I P+    W D + ++Q+++NLLSNA+KFT   G V +  
Sbjct: 446 LEVVKPQAHRHQVNLRHQLMIPPTRDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRA 505

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            W         ++D G GI       +   F Q   +   A  G GLGL + +  +  H 
Sbjct: 506 WWKED-ELIFQVQDTGIGIPAHLQSLLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHH 564

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G   + S   +G      LP 
Sbjct: 565 GWIDVDSTEGKGSTFTVGLPA 585


>gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
 gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
          Length = 806

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +      R +AEE +  KS FLA+MSHE+RTPLN+I+GFS ++        + 
Sbjct: 567 ITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAET----DDR 622

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  + + LL L+++ILDLS+IE+G ++   S + + +   + I  L+++  
Sbjct: 623 EERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSLEMKVP 682

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E    +F+K  P    ++ D+    QVI N ++NA+KFT   G + +    T+       
Sbjct: 683 ETVDLVFEKYMPD-CHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHEIKFY 740

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I ++   F +      +  QG GLGL I +S+++  GG+  + S   E
Sbjct: 741 VRDTGVGIPKEKIDSIFERFVKL----NTFVQGTGLGLSICKSLVSQMGGKIGVESTEGE 796

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 797 GSCFWFTHP 805


>gi|255008569|ref|ZP_05280695.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146297|ref|ZP_07808490.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135064|gb|EFR52424.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 639

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE +++   E + RAEE N  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 395 RLKDDLERSQADLYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILDLSR+EA +  L+     ++ + R+ +  +++ 
Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEADKVTLTPEDCDVVQLCRQALSSVEMS 511

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
            +E       +       +  D + ++QV++NLL+NA KFT   G + +           
Sbjct: 512 RRESGNRFVFETQTESFVLQVDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI + +   V   F +         QG GLGL I +  +   GG   I   
Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGSIWIDPD 626

Query: 462 LREGVEVIAILPN 474
              G   +   P 
Sbjct: 627 YERGARFVVSHPL 639


>gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 616

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              + +F++++SHELRTPL ++  + E +        N      ++  I    + ++ +I
Sbjct: 371 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 428

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSL 358
           N++L LSR++ G  ++    ++L D V   +    +          +K   I ++     
Sbjct: 429 NDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKREFPHQA 488

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +   + +   +SI D G GI   ++ 
Sbjct: 489 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 547

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL I++ I+  H G+    S    G      LP   + 
Sbjct: 548 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPYEAIS 607

Query: 479 NF 480
             
Sbjct: 608 EE 609


>gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21]
 gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21]
          Length = 1323

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 10/309 (3%)

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAK 232
             +++   H   + +A  L  +      +   +          +     +D L   +    
Sbjct: 789  VRSVSRPHAYTMGMAAPLYDSEGKVIAVIESVRDITELKEGEEELKRHRDHLEELVRERT 848

Query: 233  SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  ++RAE  N AKS FL+SMSHELRTPLNAILG++++++ +       +T ++ + 
Sbjct: 849  MELLVAKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD---NLTDTQRQQLE 905

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             +   G+HLL+LIN++LD+ +IEA + E+   +  L  ++ +   + +++A EK++    
Sbjct: 906  IVRGCGEHLLSLINDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEKDLGFRY 965

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGP 410
            +   SL   V  D++ ++QV+LNLLSNAVK+T   GRV V V +  S       I D G 
Sbjct: 966  EELTSLPRAVRGDQRKLKQVLLNLLSNAVKYTRR-GRVTVRVDYELSSGTFVCEITDTGI 1024

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GIA  ++  +   F Q + A +   +G GLGL I + ++    G+  + S+   G     
Sbjct: 1025 GIAPDKLNIIFEPFVQLADAGQVR-EGTGLGLSITRRLVTLMQGEVAVESEPGFGSTFRV 1083

Query: 471  ILPNTRVLN 479
             LP   V  
Sbjct: 1084 ELPLPEVTE 1092


>gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 584

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 2/228 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+  I G++E +    +   + E  + ++  I      L  L+ ++
Sbjct: 359 RRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPERAERFLLIIQNHADRLSGLVRDL 417

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS +E+G   +    ++L + +R+ ++++  R +EK +++ Q    +  +V AD   +
Sbjct: 418 LTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRL 477

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NLL NA+K++  G  V V      G    +S++D+G GI E ++P +   F +  
Sbjct: 478 EQVLINLLDNAIKYSETGKSVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVD 536

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            A      G GLGL I + I+  HGG   ++S+  +G      LP  R
Sbjct: 537 EARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLPIAR 584


>gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 576

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 LIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP  +  + 
Sbjct: 529 LGLAMVKQLAELHGGCVAVASVKDLGARFVVWLPIRQPESA 569


>gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 668

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 134/253 (52%), Gaps = 5/253 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    + +  AE+ N AKS FL+SMSHELRTPLNAILG+ ++           
Sbjct: 270 ITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLF---DYDTNLT 326

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + + ++ ++G HLL+LINE+LDL++IEAGR  LS   +    ++ E + ++   AQ
Sbjct: 327 PDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLAQ 386

Query: 345 EKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E+ I I +       S+++AD   ++Q +LNL+SNAVK+    G V++++         I
Sbjct: 387 EQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLRI 446

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI +     V   F +   A   A +G G+GL I + ++   GG     S++ 
Sbjct: 447 MVTDTGRGIPDALQAQVFEPFNRLH-AELGAVEGSGVGLVITKRLVEMMGGTLGFHSEVG 505

Query: 464 EGVEVIAILPNTR 476
            G      LP  +
Sbjct: 506 VGSRFWMDLPLAK 518


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 14/302 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G +   LSF T       + ++ ++   A++  +  E +  +    + ++ AE  +  KS
Sbjct: 513 GRVLGTLSFGTRTRKTFSEDDLSLMKAVADQVSIAMERKTTEENLQQAKQAAEAASRTKS 572

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +FLA+MSHELRTP+  +LG  ++         ++    +YI   +RSG+ LL ++N+ILD
Sbjct: 573 QFLANMSHELRTPMTGVLGMLDLALQSP----SDLERSDYIRTAYRSGRSLLQILNDILD 628

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           LS++EAG+Y L     SL   V E + +    A+ K IE+   +   L   V  D+  +R
Sbjct: 629 LSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRKGIELELDLAQDLPARVAGDQVRLR 688

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           QV+ NL+ NAVKFT   GRV V V                + D G GI + +   +  +F
Sbjct: 689 QVLTNLVGNAVKFTER-GRVTVQVEVADKTPEGESLLRFRVSDTGIGIPQDKRHLLFQAF 747

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q   +      G GLGL I++ I+   GG+    S    G          R++   P++
Sbjct: 748 SQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVGSTFTFT---ARLVVPHPDE 804

Query: 485 NH 486
             
Sbjct: 805 QP 806


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 27/258 (10%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLNA++G + ++E   +        ++ +  I +SG+ LL  IN++
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAH----QQDLVETIRQSGETLLITINDV 213

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD ++IE+G+ EL     +L D +   + +   +A +K +E+   IDP +  ++  D   
Sbjct: 214 LDFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTR 273

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT----------------SGRGQYISIKDNGPG 411
           +RQ+++NLLSNA+KFT + G V V+V                          S+KD G G
Sbjct: 274 LRQILINLLSNAIKFTDV-GEVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIG 332

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +     +   F Q   +      G GLGL I++ +    GG+  + S L EG      
Sbjct: 333 IPKDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFC 392

Query: 472 LPNTRVLNFIPEDNHEST 489
                V+  + +D  E  
Sbjct: 393 -----VVLSVDQDASEPN 405


>gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 680

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 14/271 (5%)

Query: 226 AELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +E   A+ + ++  R+ AE  N  K  FLA +SHELRTPL ++LG+S+++  + +     
Sbjct: 270 SEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKAT 329

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  I R+    + LI +ILD+SRI  G+  L+ S ++L  +V   +  ++  A 
Sbjct: 330 A---RALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAALEAVRPLAD 386

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399
            K++ I   +D +LS V  D   ++Q++ NLL+NA+KFT   G+V + +   SG      
Sbjct: 387 TKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKEGKVEIRLEGISGGLSDDL 446

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GI    +P V   F Q       +  G+GLGL I + ++  H G  L 
Sbjct: 447 THAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTILA 506

Query: 459 RSK-LREGVEVIAILPN---TRVLNFIPEDN 485
            S  + +G       P     R     P +N
Sbjct: 507 ESPGVGKGATFTVRFPLIQENREPRPAPTEN 537


>gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 537

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+  I G++E +    +   + E    ++  I    + L +LI ++
Sbjct: 313 RRDFVANVSHELRTPVTVIKGYAEALA-GGLVEEDPERAGRFLEIICSHSERLADLIRDL 371

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS++E+G  +L  + I L   V     +L+ +A  K I I          V AD   +
Sbjct: 372 LTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRL 431

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NL+ NA+K+T  GG + ++    +     +S+ D G GI   ++P +   F +  
Sbjct: 432 EQVLINLMDNALKYTPPGGTITLSAD-EADGMVRVSVHDTGIGIPPKDLPRIFERFYRVD 490

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A    E G GLGL I + I+  HGG   + S+  +G      L
Sbjct: 491 AARSRDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTL 534


>gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 554

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 138/265 (52%), Gaps = 9/265 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----E 275
           E +++  +    K L D+ R    E N  ++ F A++SHEL+TPLN IL   +++     
Sbjct: 264 EIENIKQKSNENKKLLDKER----EFNKIRTEFFANLSHELKTPLNVILSSQQLLALYLR 319

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                 ++ E  ++++  + ++   LL LI+ ++D++RI++G + L+    +++ I+ + 
Sbjct: 320 NGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLQNHNIVTIIEDI 379

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            + +    + K+I++    D        DE  + ++ILNLLSNAVKFT  GGR+ V +  
Sbjct: 380 TLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGRIKVNI-H 438

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    I+++DNG GI + +I  +   F Q   +     +G G+GL + ++++  H G 
Sbjct: 439 DDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDTSFTRISEGSGIGLSLVKALVEMHNGT 498

Query: 456 FLIRSKLREGVEVIAILPNTRVLNF 480
             + S+  EG E I   P  + +  
Sbjct: 499 ISVESEYGEGSEFIIYFPINKQITS 523


>gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3]
 gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
          Length = 934

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 124/255 (48%), Gaps = 8/255 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +      +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 384 ERDTTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIE----PN 439

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L+N  +++ I  +  SG HL +L+N+ILD S++E G+ EL         ++       + 
Sbjct: 440 LDNPEHRKQIQILLESGNHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEP 499

Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTS 397
              EKNI++  + +         D+  +RQVI NLLSNAVKFT  G    +    V    
Sbjct: 500 ICDEKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEG 559

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +G   +I D G GI    + ++   F Q   +      G GLGL I + ++   GG   
Sbjct: 560 QQGIEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTIS 619

Query: 458 IRSKLREGVEVIAIL 472
           I S++ +G      L
Sbjct: 620 ITSQVDKGTRFAIFL 634


>gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969


>gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1121

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 8/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++    +    + + +AE    +K+ FLA+MSHE+RTP+NAI+GFS+++    +   N 
Sbjct: 516 ISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAIIGFSDILLESEISGEN- 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+++  I +S + LL+L+N+ILD +++E  + EL      L + V   I  L L+A+
Sbjct: 575 ---KKHLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQAR 631

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E+   I+  ++  +   E  +RQV++N+L NAVKFT   G V + V          
Sbjct: 632 NKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEK-GHVTLNVLKLQDGKIRF 690

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D+G GI E  +  +   F Q   ++     G GLG  I++ ++   GGQ  + S+  
Sbjct: 691 SVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQLVTLMGGQIHVTSEAE 750

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G      LP T      P D   S
Sbjct: 751 VGSCFFFDLPLTE--TEAPSDTKTS 773


>gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 170/438 (38%), Gaps = 28/438 (6%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM---NSDIKIGEVYVWRIWLLVGQIA 116
             +  W        + S   + + +    L  + +       K  E    R+  +V   A
Sbjct: 244 TVLALWHGNLWTATLLSGGMILLLSLFGLLLARSLATQREQGKELEATNARLSAIVDTAA 303

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FP 169
            G+  T    V        +     +   L+  S+  L           +          
Sbjct: 304 EGIITTRPDGVIEAANPAAHAIFRHAPGELVGRSVVELLPADRREDAARTLDEIAHGRRH 363

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +      +AI     +D    G      SF    +  L K+    L     +D  + E +
Sbjct: 364 LDPTARGEAIALRPAVDGEAGGESGKTESFPLAYSMALVKTAAGPLYAAILRD--LTEEK 421

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    + +++AE+    K  FLA+MSHE+RTP+N ++G + ++    +        + 
Sbjct: 422 RLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDTAL----QADQRG 477

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I  S + LL +IN+ILD S+I+AGR EL      L+ +V     +L  RA  K ++
Sbjct: 478 YAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILAPRAVAKGLD 537

Query: 350 IFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------G 398
           +   + P L  ++  D   +RQ++LNL  NAVKFT   G V + +   +          G
Sbjct: 538 LASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFTDS-GSVTILLNEEAPIDNDSGDGGG 596

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI E + P + T F Q   +      G GLGL I + +    GG+  +
Sbjct: 597 VRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICKRLTELMGGRIGL 656

Query: 459 RSKLREGVEVIAILPNTR 476
            S    G      +P  R
Sbjct: 657 DSHPGTGSVFWVSVPLKR 674


>gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 766

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               +R  A     AK  FL++MSHELRTPLNAI GFS +++ +      +E   +YI  
Sbjct: 384 ELINSRDEALMAEKAKDEFLSNMSHELRTPLNAINGFSSLLKRQI----KDEKQSKYIEH 439

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S   L+ LIN+ILDLS++++G++ L          +   +       +  ++ +   
Sbjct: 440 ILESSSQLIGLINDILDLSKLQSGKFILDYHRFEPYSNIYSLVERFSPNIETASLNLVLD 499

Query: 354 IDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           +D SL  V   D   + Q+I NLLSNA+KFT  GG V ++        + I + DNG GI
Sbjct: 500 LDDSLKIVANGDWLRISQIITNLLSNAIKFTPAGGEVRLSANHNDDNLRII-VSDNGLGI 558

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++     +   F Q   +      G GLGL I  +++     Q  + S+   G      +
Sbjct: 559 SKEVQEKIFMPFEQADSSTTRKFGGTGLGLSIVSNLLKQMDAQIKLESEDGNGSTFELNI 618

Query: 473 PNTR 476
           P   
Sbjct: 619 PIKE 622


>gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
 gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
          Length = 660

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            Q I+   ++ I    +          +   L ++  ++   +        +LE ++   
Sbjct: 368 VQFILLTFLVLIGGLMIALYYYYRTKILKNRLERTTKQLREDK-------KKLEASEIEL 420

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + ++RAEE N  KS F+++MSHE+RTPLNAI+GFS ++         +E  +EY   I 
Sbjct: 421 RDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINSV---EPSEELQEYANIIQ 477

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +   LL LI+++LD+SR+E+G+ + +     L+   +  I  L  R +  N ++  ++ 
Sbjct: 478 TNSNLLLQLISDVLDVSRLESGKLQFNYEWCELVTHCQNMI-TLTNRNKTTNADVRLQMP 536

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAE 414
                ++ D   ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E
Sbjct: 537 KEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTGTGIPE 596

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   V   F +         QG GLGL I +  +   GG   I    + G   I   P 
Sbjct: 597 DKQELVFQRFEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKDYKGGARFIFSHPI 652

Query: 475 TRVLNF 480
               + 
Sbjct: 653 KEREST 658


>gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
 gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
          Length = 839

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 10/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              N +++      + ++           E ++ A   N AKS FLA+MSHE+RTPLN I
Sbjct: 306 IDGNDELVEFTDTLNRVMERNYQHNQELVEAKEDAVSANKAKSAFLANMSHEIRTPLNGI 365

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E++    + P      +E +GDI  S   LL L+N+ILDLS+IE+G   LS     
Sbjct: 366 IGMAEILSQSKLSP----NQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 421

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L + V + + ++  +A  K+IE+   ID  +   ++ DE  +RQV+ NLLSNA+KFT   
Sbjct: 422 LREAVYDSVSVILSKAISKDIELDVNIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFT-SN 480

Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G +   + +T           S+ D G GI   ++ ++   F Q   +I     G GLGL
Sbjct: 481 GTITTDIAYTPMSMGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 540

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I + ++   GG    RS   EG      L
Sbjct: 541 AICRQLVDLMGGYITARSVKGEGSTFTFCL 570


>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
 gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
          Length = 1111

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 9/295 (3%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +S        +   + +++   +    L+ +    +      ++ AE  N  KS FLA
Sbjct: 818  GTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLA 877

Query: 255  SMSHELRTPLNAILGFSE--------VIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +MSHE+RTPL +I+GF+E        ++E     P       ++   I  SG  LL  ++
Sbjct: 878  NMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLD 937

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
             +L+LSR+EAG  EL  S ++L D V E   + + +A  + I++  +          DE 
Sbjct: 938  TVLNLSRLEAGEMELDCSPLNLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEG 997

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            G+R  + NL+SNA+K+T  GG V V  G        + ++D G G+    +P +   F Q
Sbjct: 998  GLRIALQNLISNALKYTEEGGTVRVRAGRRGDD-VALEVEDTGVGMDPDHVPELFEPFRQ 1056

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             S       +G GLGL + +  +   GG   + +   EG      +P     +  
Sbjct: 1057 ESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGEGSCFTVRVPAADAPDPA 1111


>gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 623

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 23/346 (6%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---- 206
           +   S   L   V      +    +   I+S   +   L  ++                 
Sbjct: 276 VHFYSTAELQEMVLSQTISLFEFSTILLIISFLFVSYLLFIVIIRPCYLLVDYVRRCGEG 335

Query: 207 -----------LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                         S V+I +   E + L+A  +      +   K+A   N AK+ FLA 
Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQSQELEYAWKKALVANQAKTHFLAK 395

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TPLNAI G+ ++++L      +N      I  I  S   LL  ++E+LD S IE
Sbjct: 396 VSHELKTPLNAIKGYIQLLKLSI----DNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIE 451

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374
            G+ +L    I L         +  +   +K+++    ID  + SV + DE  ++Q+I+N
Sbjct: 452 DGKVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIIN 511

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L+SNA+KFT  G   V   + + +    Y  I +KD G GIAE ++ ++  SF Q + +I
Sbjct: 512 LMSNALKFTEHGKIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSI 571

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
                G GLGL I++ +    GG  ++ SK+  G      LP +++
Sbjct: 572 SRQFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLPLSKI 617


>gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ubonensis Bu]
          Length = 861

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 150/404 (37%), Gaps = 38/404 (9%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
               L  +     +    V   R++         +    + L          +    + T
Sbjct: 349 VMWMLLVRFYRRTLMPVYVRSQRVFDSEELCRNVIEMAPIGLGLISRSDGRLMLASGTLT 408

Query: 145 LLIA--------LSISALSNFMLPYAVFL--SFFPVVVALSTQAIMSMHVLDISLAGMLA 194
            +IA        L+   ++++    A          V+ L+ Q     H+   +      
Sbjct: 409 NMIARCGDESRTLAAQVVAHYEAFLACGAPEGTMQAVLPLAGQDDAWRHLDIGARGARYQ 468

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                                         +          +E  + A+  N AKS FLA
Sbjct: 469 GEDVLIVAAVD-------------------VTAKRRIVRKLEEAVRAADSANAAKSSFLA 509

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTPLN ILG  E++E   +      +    +  +  S   LL L+N+ILD S+I
Sbjct: 510 AMSHEIRTPLNVILGNLELLERSALDV----SQHGRVQTLRTSAGSLLALVNDILDFSKI 565

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAG   +      ++ ++   +      A+ K +++F ++D S+S  +  D     QV  
Sbjct: 566 EAGAMTVESIEFGVMTVIERELSAFAPIAKAKGLQLFCEMDASISQRMRGDPMRFAQVFG 625

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NLL+NA+KFT   GRV   V            + ++D G GI+      +  +F Q   +
Sbjct: 626 NLLNNAIKFTDE-GRVTARVSIVDACGAPELAVEVEDTGIGISPEHQHKLFKAFSQVDAS 684

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I     G GLGL +   ++   GG+  + S+   G      LP 
Sbjct: 685 ITRRYGGTGLGLALCARLVTAMGGRISVASEPGAGSCFTVRLPL 728


>gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1085

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 18/338 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L   + L    V V ++ +    +  L  ++  +                +      +
Sbjct: 322 FSLFAMMALVSVIVTVYINKRVTQPIARLAEAMRNLADGNPEIPILYKDRTDEVGQISHA 381

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             + +D +I+    A+      ++ AE  + AK++FLA+MSHE+RTP+N ++G  +++  
Sbjct: 382 LSSFRDHIISRN-QAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLR 440

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +      +       +  S   LL++IN+ILD SRIEAG+  +    +SL  I  + +
Sbjct: 441 SKLDM----SQMSIANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVM 496

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-----RVH 390
             L   A EKN+ +   + P +  S+  D   ++Q++ N++ N +KF+         +V 
Sbjct: 497 DNLATEAVEKNVSLTLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFSGGQSHRGEVQVW 556

Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           +T          IS  I+DNG GI++ ++ ++   F Q   +      G GLGL I+++I
Sbjct: 557 ITADIAKDGNAKISIEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNI 616

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            +  GG     S+   G      L        +PE+N 
Sbjct: 617 ASLMGGTITANSEEGIGSTFTVNLHLR-----VPEENS 649


>gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1053

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 11/278 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +   S     +++AEE +  K+ FLA++SHE+RTP+N ILGFSE+++      L
Sbjct: 658 EDITEKKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILGFSELLKE---PHL 714

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EYI  I++SGQ +L+LINE++D+SRIE+G   L  +  S+  ++ +     +  
Sbjct: 715 SGEEQTEYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPE 774

Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
           A +K +     +      S +  D   + Q++ NL+ NA+KFT  G    V   +T    
Sbjct: 775 AAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS---VDFRYTLKND 831

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D+G  I       +   F Q   ++    +G GLGL I+++ +   GG+  + 
Sbjct: 832 CLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVE 891

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYK--CYA 495
           S    G   +  LP     +   +      Q +  C++
Sbjct: 892 SIEGRGNRFVFTLPYKPSTSVTMQQFDPDFQGRTECFS 929


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1326

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 10/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  ++     R+ AE+    KS FLA+MSHE+RTP+NAI+G S +     + P 
Sbjct: 560 RDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKTNLSP- 618

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+  I  S  HLL +IN+ILD S+IEAG+  +     SL  ++     ++  +
Sbjct: 619 ---QQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSLEKVLETLANLIGEK 675

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGR 399
           A  K +E+   I P +   +  D   + Q++ N  SNAVKFT   G + +   V   +  
Sbjct: 676 ASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFT-EHGEIVIGAKVQERTDD 734

Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               Y +++D G G+   +   +  SF Q   +      G GLGL I++ + A   G+  
Sbjct: 735 EVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAISKQLSALMHGEVG 794

Query: 458 IRSKLREGVEVIAI 471
           + S+  +G      
Sbjct: 795 VESEPGKGSTFWFT 808


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               ++ F++++SHEL+TPL +I GF + ++   +   + E   +++  I    + L  L
Sbjct: 370 LEQMRTEFVSNVSHELKTPLTSIRGFIDTLKDGAV--NDPEVAGKFLDIIDIEAERLSRL 427

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           INEIL LS IE+ + + +   + L  ++ E   +LQ  A+E+ + +   I  S+ S+ A+
Sbjct: 428 INEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESV-SIQAN 486

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +  ++Q+++NL+ NA+K+    G V V     +G    IS++D G GI +  +  +   F
Sbjct: 487 KDKIKQLLINLIDNAIKYNIENGSVTVKAEQ-AGGKVLISVRDTGIGIEKEYLDRIFERF 545

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +      S   G GLGL I + I+  + G+  + S   +G E    +P
Sbjct: 546 YRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594


>gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1198

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 172/379 (45%), Gaps = 18/379 (4%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               L+  I    C  ++ L  P     E ++ ++ +   I L+IS   N      +   
Sbjct: 382 HNIALMPLILDNECLGVIELGLPNEPREEQISFFQESCKDIGLAISDAYNRNKIQTLLEE 441

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILS---CQAEK 221
                  L  Q     ++     A    L  +          L ++N ++        EK
Sbjct: 442 SQAQAEELQMQHSELENLNMELEAQTQKLQASEEELKVQQEELLQTNQELEERSKLLEEK 501

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELET 278
           + LIAE  +      E +K+AEE  L+   KS FLA+MSHELRTPLN+IL  S ++   T
Sbjct: 502 NHLIAERNL------EIQKKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMAENT 555

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              L NE   E    I  SG  LL LI+EILDLS+IEAG+ +L    I +  IV     +
Sbjct: 556 EHNL-NEEQIESANVIQSSGASLLELIDEILDLSKIEAGKMKLEFQKIEISGIVSALKAL 614

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
                +EKN++   KI   +  +   D+  + QV+ NL+SNA+KFT+  G + + +    
Sbjct: 615 FLPIIKEKNLDFDIKIGADVGQIIETDKMRVEQVMKNLMSNAIKFTSR-GSIGLQISR-E 672

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 ++KD G GI   +   +  +F Q   + +    G GLGL I++ I    GG+  
Sbjct: 673 NNNILFAVKDTGIGIPAEQQKIIFEAFQQADGSTRRKFGGTGLGLSISREIAKLLGGEIR 732

Query: 458 IRSKLREGVEVIAILPNTR 476
           + SK  EG     ++P +R
Sbjct: 733 LLSKESEGSIFTLVVPISR 751


>gi|134109563|ref|XP_776896.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259576|gb|EAL22249.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1390

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   + + R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 804  SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        +E +  +      LL +I++ILD+S+IEAGR  + +   SL   V   
Sbjct: 864  ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L ++A +  +++   +DP++   +  D   +RQVI NL+ NAVKFT   G+V ++  
Sbjct: 920  LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978

Query: 395  WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                            + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 979  VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +    G   + S+  +G      
Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061


>gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
 gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
          Length = 612

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +S+ D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1045

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI  I  +   LL LI++ILDLS+IEAG  E   S + L DI+ E   + + R +
Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTE 777

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              I++  +       +  ++  + QV+ NLL+NA KFT+  G +         +  Y  
Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+  +
Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891

Query: 465 GVEVIAILPNTR-VLNFIPEDNHE 487
           G      +P          E+ H+
Sbjct: 892 GSTFWFTIPYQPAAAENKKEEEHQ 915


>gi|291613756|ref|YP_003523913.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583868|gb|ADE11526.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 837

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 161/404 (39%), Gaps = 19/404 (4%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
            L           L  ++M  + +I       +      +   +      L +P     +
Sbjct: 23  LLRIAFTTLILTYLFVEIMLGNPEIISRRQ--LIFASSYLVFSILLAAYVLFKPNVS--K 78

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                     L A +   L +       F  +  V+V    +      +     + +  T
Sbjct: 79  RRVFLTMICDLGATTYVILISQETGPIFFGIYLWVIVGNGIRFGAWSLITSYVTSILGFT 138

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRFLA 254
            + F         + ++ ++         I +L        +E R+     + AKS FL+
Sbjct: 139 LVIFLNDYWISNPRLSIGLMLTLILIPPYILKLRNQVNQALEEARR----ASKAKSDFLS 194

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTPLN ++G  +++    +G   ++  K+ +  + +S   LL LI+ ILDLS+I
Sbjct: 195 NMSHEMRTPLNGVIGAGDLL----LGTRLDDEQKDLVATLKKSAHLLLKLIDNILDLSKI 250

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           E+G+    ++   L  +V   + M   + ++K I +  +  P     +  D   ++QV++
Sbjct: 251 ESGKLVSEKTDFDLHKLVNSTLEMFLPQVEKKGISLSVRFTPETCFMLQGDPLHLQQVLI 310

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KFT+  G V + +               + D G GI+      +  SF Q   
Sbjct: 311 NLVGNAIKFTSK-GSVELRIATLQQGDLQTLLRFEVIDTGIGISPQAQGRIFESFTQADQ 369

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            I     G GLG  I++ ++   GG+  ++S+   G      +P
Sbjct: 370 NITRIYGGTGLGTTISKQLVELMGGKMGVQSEQGIGSIFWFEIP 413


>gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 1045

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI  I  +   LL LI++ILDLS+IEAG  E   S + L DI+ E   + + R +
Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTE 777

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              I++  +       +  ++  + QV+ NLL+NA KFT+  G +         +  Y  
Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+  +
Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891

Query: 465 GVEVIAILPNTR-VLNFIPEDNHE 487
           G      +P          E+ H+
Sbjct: 892 GSTFWFTIPYQPAAAENKKEEEHQ 915


>gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
 gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
          Length = 565

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 15/313 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             ++ M + D  L  +    + F T    +L +  +   +   +   L   LE A     
Sbjct: 255 SLLLPMALYDQILGFIYLEEVGFLTDNDQYLLQIMITQCAAALKNLKLYTHLEEANRQ-- 312

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                    N  K++FL   +H+LR PL  ILG+ ++++ E +  + +E   +Y+  IH 
Sbjct: 313 ---------NERKNQFLGMAAHDLRNPLGVILGYGQMLQEEAL-EILDEEQLDYLNRIHN 362

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + Q  LNL+N +LD+++IE+G   L      L+  + E I + +  A+ K I++    D 
Sbjct: 363 ASQFTLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYDE 422

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +L  +  D   ++QVI NL+SNA+K++    +V +           IS+ D G GI + E
Sbjct: 423 NLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQND-VLISVTDEGQGIPKSE 481

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F + S+   + E   GLGL I + I+  H G+  + S++  G     +LP   
Sbjct: 482 LDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLPP-- 539

Query: 477 VLNFIPEDNHEST 489
           +    P++  E T
Sbjct: 540 IPEPQPQNQEEKT 552


>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1231

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/288 (35%), Positives = 159/288 (55%), Gaps = 27/288 (9%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L    ++ +L+A+ +   +     ++ A+  N AKS FLA+MSHELRTPLNAILGFS+
Sbjct: 711 AQLGVAIQQAELLAQTQKQAAELKIAKESADAANSAKSEFLANMSHELRTPLNAILGFSQ 770

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  +      +  Y +Y+  I+RSG+HLL LIN+IL++S+IEAGR  L E+   L +++
Sbjct: 771 LMNRDR---SLSTEYIQYLNIINRSGEHLLELINDILEMSKIEAGRMVLYENEFDLYNLL 827

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388
                MLQL+AQ K +++  + D ++   V  D+  +RQ+++NL+ NA+KFT  G    R
Sbjct: 828 DNLEDMLQLKAQSKALKLTFQRDKTVPKFVKTDQSKLRQILINLIGNALKFTEKGNVILR 887

Query: 389 VHVTVGWTSGRGQ-------------------YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V V     S   Q                      ++D GPGIA  +   +  +FGQ + 
Sbjct: 888 VKVAGRERSNNEQKENTNIPSSFFLLPSSFFLQFEVEDTGPGIAPEDFDKLFEAFGQTAT 947

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +KS  QG GLGLPI+Q  +   GG+  + S+L +G +    +  + V
Sbjct: 948 GLKSG-QGTGLGLPISQKFVQLMGGEITVSSQLGQGAKFTFDIQASSV 994


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENL 247
              A     + ++  H+ +  V+  S   +   +I    +LE+       +R +A E   
Sbjct: 123 AATAIYRCLYGFLGNHMRELRVQKESLALKNSQVIKVQRDLELTNDKLAYSRDKALEGVR 182

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K  FLA+MSHE+RTP+N +LG  +++    M    +   ++ +G    S + L+ +IN+
Sbjct: 183 MKDIFLANMSHEIRTPMNGVLGMIDLLYDTEM----DAEQEQLVGTARSSAETLMRIIND 238

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILD S+IEAG+  +     +LI+IV     +    A EK I++    D   + V  D   
Sbjct: 239 ILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFDDVPAWVVGDPHR 298

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSF 424
            +QV+ NL+SNAVKFT   G V +           G    +KD G GI   ++  +   F
Sbjct: 299 YQQVLNNLISNAVKFTDS-GEVEIRACQVETGSGLGILTEVKDTGIGIPASKVTKLFEPF 357

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q   +      G GLGL I +++    GG+    S+L +G     +LP   
Sbjct: 358 TQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLPFAP 409


>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
 gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
          Length = 911

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++    +    LD  + G     L
Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+         KRA+E  
Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLANKRAQEAA 280

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 337 DVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDVPEQVVGDA 396

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + VT    + +     + I+D G GI+E +   +  
Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTGIGISESQQAQLFQ 456

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFKFHL 506


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 129/268 (48%), Gaps = 7/268 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E      E+E A+   +E  ++    +  KS FLA+MSHELRTPLN++L  + ++   ++
Sbjct: 499 EVARKNQEVERARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSL 558

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L ++   EY   I+ +G  LL LIN+ILDL++IE+G   L    I+  D+        
Sbjct: 559 NNLTDKQV-EYSRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTF 617

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVT--V 393
           +  A  K +    ++D  L  +++ D K ++QV+ NLL+NA KFT  GG    + ++   
Sbjct: 618 RQVAHNKELSFTIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDA 677

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G GI   +   +  +F Q          G GLGL I++ +    G
Sbjct: 678 AQIDNPMVAFAVSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLG 737

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G+  + SK  +G      LP  +  N  
Sbjct: 738 GRIELVSKPGQGSTFTLYLPRRQEKNSQ 765


>gi|323492710|ref|ZP_08097854.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313085|gb|EGA66205.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 770

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 153/398 (38%), Gaps = 23/398 (5%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS------ATLLIALSISALSNFMLP 160
           +  +        +   +  L        +               +++  +  A+      
Sbjct: 100 QRAMTSDTGLNSVDDGIFDLRTEIEVNGKAYGYVDIGFETQPIMMMLNDAQKAIVGIATM 159

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             V ++ F   +       ++     ++  G               +             
Sbjct: 160 EVVLVALFSFALGTYLTRGLTRLTSAVTTIGHSGPGFQLNEQAKDEIGDVARA------- 212

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            DD+ A+LE    L +  R+ AE    +KSRFLASMSHE+RTP+N +LG   ++E   + 
Sbjct: 213 FDDMSAKLEQDYKLLNAAREDAELSCDSKSRFLASMSHEIRTPMNGVLGILNILEETELS 272

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  ++ +     SG  LL++IN+ILD +R+E+    L +        V   +    
Sbjct: 273 N----EQRKLVSTATESGHFLLSVINDILDFTRMESNTLILEDQPFDFRHCVESVVDSFT 328

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398
             A+ +N+ +   I+ SL   V  D   ++Q++LNL+ NA+KFT  G   + V     + 
Sbjct: 329 PTAKAQNLVLHCYIEGSLPGKVRGDINRVKQILLNLIGNAIKFTHQGSVTIKVGSEPLAD 388

Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +   I+  I+D G GI +  I  +   F         +++G GLGL I + +     G+ 
Sbjct: 389 KKVRITCQIQDTGIGIKQSAIEYLFDEFTMVDQTYSRSKEGSGLGLAICRRLCNLMDGEV 448

Query: 457 LIRSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQYK 492
            + S+   G        LP    L   PE      + K
Sbjct: 449 RVESQPDIGSTFTFDISLPVADELISSPESTDSKPELK 486


>gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 460

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 137/310 (44%), Gaps = 15/310 (4%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++ Q         I +A  +  ++     IT ++ K  VK+             +++  +
Sbjct: 154 ITVQFGEMRIFFSIIMAIAILLSILLVGVITRYIVKPIVKLTEATQNVAKGNYNVQLNVA 213

Query: 234 LSDETRKRAE----------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             DE  + A+          +    +  F++++SHE+++PL +I GFS+ ++ + +   +
Sbjct: 214 RRDELGQLADHFSQMAKGIAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---S 270

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  + Y+  I    + +  L  ++L L+ ++     L +S   + + +++ +       
Sbjct: 271 EEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQVL--FHTEW 328

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             ++ E+   +    + +  D++ + QV  NL++N++KFTA  G + + +         I
Sbjct: 329 SWRSKELTMDMSLPSTYIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSI 388

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI    +P +   F +   A   +E   GLGL I Q I+  HGG+  + S+  
Sbjct: 389 EISDTGIGIPPEHLPHIFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPG 448

Query: 464 EGVEVIAILP 473
           EG      LP
Sbjct: 449 EGTTFTVTLP 458


>gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 618

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N  +  F++++SHELRTPL ++  +SE +    +   +    + ++  I      ++
Sbjct: 372 EKTNQERRDFVSNVSHELRTPLTSVKSYSEALLDGAL--QDTSLAQPFLEVIQLESNRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ----EKNIEIFQKIDPSL 358
            +++ +LDLS+I+ G+  L +  +    +V   +  ++   +    +KN +I +   P  
Sbjct: 430 RMVSNLLDLSKIDGGQIILQKDLVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRD 489

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D+  M QVI NL++NA+K++  GG++ + +   +      S+ D G GI++ +  
Sbjct: 490 IYVDIDQDRMTQVIDNLINNAIKYSPDGGKITIGLE-DNRDSVIFSVSDQGLGISQVDAE 548

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   A    + G GLGL I++ ++  HGG+  + S   EG      LP
Sbjct: 549 HLFERFYRVDKARSREQGGSGLGLAISKEVVELHGGRIWVESIENEGSTFSFELP 603


>gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua]
 gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 927

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 963

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 146/285 (51%), Gaps = 7/285 (2%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                    ++    L         I       +  +E R  A + + AKSRFLA MSHE
Sbjct: 544 LWATVKSAVRAEDGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRFLAHMSHE 603

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFS+++++  + PL     +  +  I  SG+HLL LIN+ILDL+RIE+G+ 
Sbjct: 604 LRTPLNAIIGFSQMLDMGALDPLT-AQQQTAVSHIRDSGRHLLELINDILDLARIESGQS 662

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL+  AI L  ++ E + + +  A  + I I +  +  L  V+AD   +RQV+LNL SNA
Sbjct: 663 ELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGL-HVYADRTRLRQVLLNLTSNA 721

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +K+  +GGRV + V   +G    I + D G GI E     +   F +   A K+A +G G
Sbjct: 722 IKYNRLGGRVTIDVEP-AGEWVRIRVSDTGAGIDESLREEIFQPFQRL-GAEKTAIEGTG 779

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           +GL I + ++   GG     S   +G      L   R ++  P  
Sbjct: 780 IGLIICKHLIEVMGGSIDFDSVPGQGSRFWFEL---RPVHPEPTA 821


>gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 585

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 116/237 (48%), Gaps = 7/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     ++ F+A++SHEL+TP+ ++ GF+E +        + +  KE++  I   
Sbjct: 356 AIRRLE---KMRTEFVANVSHELKTPVTSLRGFAETLLDGA--AEDPDMRKEFLEIIQAE 410

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI ++LDLS+IE+    L    I + +++R     ++ + +++ +    K +  
Sbjct: 411 SLRLERLIADLLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEE 470

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D     Q++LNLLSNA+ +T  GG V ++ G       +I + D G GI   ++
Sbjct: 471 FP-VQVDPDRFSQILLNLLSNAMTYTPAGGEVILSAGRGETDW-WIRVADTGIGIPGEDL 528

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           P +   F +   A      G GLGL I + ++  H G+  + S+  +G E+    P 
Sbjct: 529 PRIFERFYRVDKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFPR 585


>gi|311032689|ref|ZP_07710779.1| two component system histidine kinase [Bacillus sp. m3-13]
          Length = 933

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L   N ++     + +   ++L+ AK+  +E  K+ +  +  KS FLA+MSHELRTP
Sbjct: 469 SEELRMINEQLEERSRDAEQKSSDLQKAKTELEEKAKQLQLSSKYKSEFLANMSHELRTP 528

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++  +    L +E  +E+   I+ SGQ LLNLIN+ILDLS++E  + E+  
Sbjct: 529 LNSILLLSEMLAEDPEDQLTDE-QREFSRVINSSGQDLLNLINDILDLSKVEVKKLEVMF 587

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
             +++ + +    +     A+ K +         L  V+  DE+ ++Q++ NLLSNA KF
Sbjct: 588 GEVNVEEFINRLELQFTHIAKHKKLNYEIVRGNQLPDVFFTDEQRLQQIVKNLLSNAFKF 647

Query: 383 TAIGG-RVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           T  G   V +            V   +     IS++D G GI++ +   +  +F QG  A
Sbjct: 648 TEQGKVSVKIEKAPKRDLLRANVNVKADTWLKISVEDTGIGISKDKQSLIFEAFHQGDGA 707

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 G GLGL I++      GG   + S+  EG     ++P
Sbjct: 708 TMRKYGGTGLGLSISKEFSNLLGGSVFVESEEGEGSVFTLLIP 750


>gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 514

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 141/260 (54%), Gaps = 1/260 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +    E +  A+E + +K+RFLA++SHELRTPLNAI+G SE+I  E  G +
Sbjct: 241 RDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGGI 300

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N  Y+EY  DI+ SG HLL++IN ILD SRIE  +  L +  + ++ ++ +    +Q  
Sbjct: 301 GNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQRL 360

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             E  +    +    L  V AD + +RQ++LNLLSNA+K T  GGR+ +T    +     
Sbjct: 361 LDEGGLTCELQAKGPLVLV-ADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGELV 419

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D+G GI    +  V   F        S + G GLGL I + ++  HGG   I S++
Sbjct: 420 LTVRDSGEGIPRERLALVTEPFNLDEDISVSRQGGTGLGLAITKGLIKRHGGAMSINSRV 479

Query: 463 REGVEVIAILPNTRVLNFIP 482
            EG  V  + P  RV    P
Sbjct: 480 GEGTTVRLVFPAERVPFGGP 499


>gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 354 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 411

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 412 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 471

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +S+ D G GI   ++  +   F
Sbjct: 472 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 530

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 531 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 586


>gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 715

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+  ++ E      L    R  AE  N  K  FLA +SHELRTPLNAILG+S++++   +
Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKL 366

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P       + +  I R+    + LI ++LD+SRI  G+  ++ + ++L+ ++   +  +
Sbjct: 367 DPT---RTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETM 423

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +L A+ K I++     P++  V  D   ++QV+ NLLSNAVKFT  GG++ VT+      
Sbjct: 424 RLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKME-G 482

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI    +P V   F Q   +      G+GLGL I + I+  HGG    +
Sbjct: 483 YAQIVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQ 542

Query: 460 S-KLREGVEVIAILPNTRVLNFIPEDN 485
           S    +G      LP       +PE++
Sbjct: 543 SLGEEQGASFTVRLPI------LPEED 563


>gi|330906611|ref|XP_003295535.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
 gi|311333095|gb|EFQ96363.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
          Length = 1329

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 709 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 768

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 769 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 824

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 825 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 883

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 884 MAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 943

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 944 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 987


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  +LV     G       L E        L +     +L  + ++
Sbjct: 1160 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1219

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210
            + + F      FL+    ++A S   I      ++ L+                    K+
Sbjct: 1220 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1279

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1280 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1339

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L      E+   IH +G  LL LIN+ILDLS+++AG+ 
Sbjct: 1340 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1398

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +  + EK +++  ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1399 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1458

Query: 379  AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G   + +                               S+ D G GIA  ++ 
Sbjct: 1459 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1518

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1519 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1574


>gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 617

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 15/334 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            + +L  AV      + V+L   + +      +         +     ++  L  S    
Sbjct: 190 FHLILQIAVLGGIIAICVSLILVSFLRQLQAYLKQLHHSMEIIGRGD-LSEKLEVSGNDE 248

Query: 215 LSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           LS  +   +L  +         E   +     ++ AE+ + AK+ FLA+MSHE RTPLNA
Sbjct: 249 LSQISGAINLTTDNLKRLHTVLEQRVNELSLAKEEAEKASRAKNVFLANMSHEFRTPLNA 308

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS  I         +   ++++  I  SG HLL LIN +L +S+IEAG+ E++E   
Sbjct: 309 IIGFSSHIAQ---SAALDPEERKHLSIISNSGNHLLTLINSVLAMSKIEAGKTEVNERTT 365

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           +L D++ +   M  L+A EK +       P L + V  D+  + Q+++NL++NA+KFTA 
Sbjct: 366 NLQDLLADIHAMFSLKAAEKALSFDLICHPDLPAIVQVDDVKLWQILINLINNAIKFTAR 425

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V V V           I+D GPG+A+ E   +   F Q     +   +G GLGL I 
Sbjct: 426 GG-VKVIVEKNDTPEILFKIRDTGPGMAKDEQAMIFDPFVQL-ATDQGINEGTGLGLAIC 483

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +S +   GG+  + S   +G      +P   +  
Sbjct: 484 RSYIHLMGGEVKVDSVRGKGSTFFFSIPLKTLAE 517


>gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 904

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 30/297 (10%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H     +K+L     +  +  +         E +  AE  N AKS FLA+MSHELRTPL
Sbjct: 361 RHWQDLELKLLKKVGAQLGVALQQANLLKDLREAKNAAETANQAKSVFLANMSHELRTPL 420

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++  +    L     K+ +  I+ SG HLLNLIN++L++S+IEAG+ +L++ 
Sbjct: 421 NAILGFSQLLSRDQNLTL---EQKQTLRTINSSGAHLLNLINDVLEMSKIEAGKVDLNQG 477

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L  ++     M  L+A+ + + +  ++ P L   + +D   +RQV++N+L NA+KFT
Sbjct: 478 QFDLRALLESLFEMFSLKAEARQLRLDFELPPDLPQYIVSDASRLRQVLINVLGNAIKFT 537

Query: 384 AIGGR-------------------------VHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +G                           + +     +     I++ D G GIA+ E+P
Sbjct: 538 EVGSVTLAISTLPLQSVSEQLSDISSENEAITLEPTLENDTLLQITVTDTGVGIADDELP 597

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F Q     +S  +G GLGL I++  +    G   + SK  +G +V   +P  
Sbjct: 598 NLFNLFTQACAGRQS-FEGTGLGLAISRQFVQLMQGDIHLSSKEGQGTKVQIQIPVK 653


>gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969


>gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
            12472]
 gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
            ATCC 12472]
          Length = 1436

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 138/262 (52%), Gaps = 9/262 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            +   + A  + +  ++ AE  + AKS F+A+MSHE+RTP+N +LG  E++    +  +  
Sbjct: 787  VRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNTRLDGV-- 844

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + Y+  +  S + L++++N+ILD S++EAG+ E + +   L +++     M+ + A 
Sbjct: 845  --QRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAMMSMHAA 902

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
             K +E+   +DP++ + +  D   ++QV++NL  NA+KFTA  G V V+VG     G+  
Sbjct: 903  RKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAE-GEVAVSVGREKRDGRDW 961

Query: 402  -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +++D G G+    + T+   F Q   +      G GLGL I++ ++   GG+  + S
Sbjct: 962  LLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGEIGVES 1021

Query: 461  KLREGVEVIAILPNTRVLNFIP 482
            +  EG      LP        P
Sbjct: 1022 RPGEGSRFWFALPLEPADKEPP 1043


>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1044

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 13/276 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E + A+ ++   ++ AE  N AKS FLA+MSHE+RTPLN I+G  ++++  ++    N
Sbjct: 649 VTERKNAEYVALRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTTSL----N 704

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY     +S   L +L+++ILDLSR+EAG+  +      L   + + I +    A 
Sbjct: 705 HEQLEYSSMAVQSTSRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIAL 764

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +  +E+    D +L   V  D   ++QV+ NL+ NA KFT   G V V       R    
Sbjct: 765 QSGVELRHHFDDTLPQHVIGDPLRLQQVLTNLIGNAFKFTER-GFVSVEAYPLPARNENQ 823

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +  + D+G GI +  +  +   F Q S       QG GLGL I + ++   GG   I
Sbjct: 824 LRIFFEVSDSGCGIPDEALGLLFEPFSQVSQGYTRQYQGAGLGLSICKRLVGLMGGNMAI 883

Query: 459 RSKLREGVE--VIAILPNTRVLNFIPEDNHESTQYK 492
            S++  G        L     L          T  +
Sbjct: 884 SSEVGVGTSIYFCVTLDKALKLPAQDSSAQTKTALR 919


>gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 761

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  + +    R++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++  E +     
Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ +   LL LIN+ILDLSR+E+G+         L  ++ E     QL   
Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E  +E+  ++      V  D   ++QV+ N ++NA+KFT  G   ++ VG+   T G   
Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI E +   V   F +         QG GLGL I Q I    GG+  ++S+
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744

Query: 462 LREGVEVIAILPNTRV 477
             +G   +  LP  R+
Sbjct: 745 YGKGSRFMLTLPKERI 760


>gi|119468942|ref|ZP_01611967.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
 gi|119447594|gb|EAW28861.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
          Length = 577

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 134/254 (52%), Gaps = 10/254 (3%)

Query: 227 ELEVAKS--LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           E EVA      +  ++ AE  N AKS FLA+MSHE+RTP+NAI+G + +     +    +
Sbjct: 46  EQEVANRTHDLELAKQDAEAANEAKSDFLANMSHEIRTPMNAIIGMAYLALDTEL----S 101

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+  IH S + LL +IN+ILD S++EAG+ EL +   +    +   + ++   A 
Sbjct: 102 EKQRDYVEKIHYSAESLLGIINDILDFSKVEAGKIELEQKEFNFNTFLENLVNIISTLAS 161

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRG-- 400
           ++ IE+   IDP L      D   + QV+LNLL+NA+KF+  G  +  V +         
Sbjct: 162 QRKIEVVFDIDPLLPDFFIGDALRLNQVLLNLLNNALKFSTRGKVILAVKLVQKVDSYCS 221

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              SI DNG G+ + ++ ++   F Q  ++      G GLGL I+++++    G   + S
Sbjct: 222 VAFSISDNGIGMTQAQVDSLFKPFTQADVSTTRKFGGTGLGLVISKTLVELMQGDITVNS 281

Query: 461 KLREGVEVIAILPN 474
           KL +G      +P 
Sbjct: 282 KLNKGSCFSFTIPL 295


>gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1371

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 14/246 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS+FLA+MSHE+RTP+  +LG +E++     G   +E  +EY+ +I  S   LL +IN
Sbjct: 796  RLKSQFLANMSHEIRTPITGVLGMAELLA----GMHLDEEQQEYVENIQSSATSLLTVIN 851

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363
            +ILD S++E+GR ++ E   SL  IV+E   MLQ   + KN++   +I  S+     V  
Sbjct: 852  DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSEIGDSIENDLVVIG 911

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            D   +RQ++ NLL+N++KFT   G V  +V              +++D+G GI +     
Sbjct: 912  DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVVAEKETAESIEVRFTVEDSGIGIQDEVRKK 970

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   F QG  +      G GLGL I ++++    G+  + S +  G      +P  +   
Sbjct: 971  LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNK--P 1028

Query: 480  FIPEDN 485
              P + 
Sbjct: 1029 SGPAEA 1034


>gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 761

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 13/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  + +    R++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++  E +     
Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ +   LL LIN+ILDLSR+E+G+         L  ++ E     QL   
Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
           E  +E+  ++      V  D   ++QV+ N ++NA+KFT  G   ++ VG+   T G   
Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI E +   V   F +         QG GLGL I Q I    GG+  ++S+
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744

Query: 462 LREGVEVIAILPNTRV 477
             +G   +  LP  R+
Sbjct: 745 YGKGSRFMLTLPKERI 760


>gi|225027309|ref|ZP_03716501.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
 gi|224955371|gb|EEG36580.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
          Length = 955

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 11/317 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +  ++L +SL   +   +     +       ++  K      +   L  ELE  +    
Sbjct: 506 FIQDNLLAVSLIVGIFIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A+  N AK+ FL +MSH++RTP+N I+G   ++E       + E  K+ +  I+ 
Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+L+N++LD++++E+     S+ +I+L  + +E    L  +A+EK + +  + D 
Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411
            S   VW++   +++V++NL +N++K+  + G ++++   +  +         I+DNG G
Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742

Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++E  I   + T F Q   + +S   G GLG+PI + ++   GG   + SKL EG     
Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802

Query: 471 ILPNTRVLNFIPEDNHE 487
           ILP     N   E+  +
Sbjct: 803 ILPFKIDTNARLEEKED 819


>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 830

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/438 (23%), Positives = 170/438 (38%), Gaps = 24/438 (5%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           +       ++       A    +              +   A    L  +       +  
Sbjct: 114 DGSAGAFVLVRAGAAFTAEERGYLESLLGVLGLLAQLVNTTARAERLAARFGAIVQTLPH 173

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
             V+           G    LL +    T          +     +    AL       A
Sbjct: 174 ALVFIDDDGSEAFVNGAAAALLGISPAVTEPARVSAAMHAMRARASEQEDALRTIATAVA 233

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                  V ++L+        VL +S             ++   +   ++ +        
Sbjct: 234 HDREIRDVRLSLAATESAPRTVLSVSSTPTRERGTPGRLWLYIDITARHLAL-------- 285

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
               +LE   +  +  R  A+  N AKSRFLA+MSHELRTP+N +LG + ++    + P 
Sbjct: 286 ---EQLEANNAALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAPE 342

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E    Y+  I  SG  LL +IN+ILD S++EAG +EL     SL   V E   ++ + 
Sbjct: 343 PSE----YVETIRSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVS 398

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------- 394
           A +K +E+  +I   +   V  D   +RQVI+NLLSNA+KFT + G V + +        
Sbjct: 399 AAKKRLELALRIAEDVPWTVRGDITRLRQVIVNLLSNAIKFTDV-GEVVIAIACAPKIDC 457

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +G   ++S++D G GI      ++  SF Q   +I     G GLGL I   ++A   G
Sbjct: 458 QRAGVRLHLSVRDTGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDG 517

Query: 455 QFLIRSKLREGVEVIAIL 472
           +  + S+   G      +
Sbjct: 518 RIWVESEQGAGATFHFTI 535


>gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 818

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 8/239 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R++ E+ N AKS FLA+MSHE+RTPLN I+G +E++    +  +     K+Y+  I+ S
Sbjct: 320 AREKEEQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKDYLATINSS 375

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q LL LIN+ILDLS+IE+G  E+     ++ +++ + + ++  +AQ+++IE+   ID +
Sbjct: 376 SQTLLMLINDILDLSKIESGHLEICPHTCNIKEVIYDTVALIAPKAQQRSIEMRITIDQN 435

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIA 413
           +   V ADE+ +RQV++NL SNAVKFT  G    ++ + V  T       S+KD G GI 
Sbjct: 436 IPCYVRADEQKLRQVLMNLASNAVKFTHSGSVSFKLQLEVETTDTICILFSVKDTGIGID 495

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E +   V   F Q          G GLGL I+  ++   GG+  I S    G E    L
Sbjct: 496 ENKHMQVFEEFQQEERNTSVEYGGTGLGLSISTKLVRMMGGEIAINSSKGLGSEFYFYL 554


>gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1364

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        +E +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQEMVTKIDRSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   GG+  + S    G E   ++   +  +  P+   E
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVITLEK--SAPPQAQRE 881


>gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
 gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
          Length = 466

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 13/316 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+   +    I     + I+    +   LS    +  H+   +       
Sbjct: 157 LIYDMGLILAPLAFIMILLTIWIGRKIIIA----ITKPLSQMERVANHMATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  F A++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +   ++   IHR    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---QQQSKFTQLIHREAGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLET 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I   +DP +  V  DE  M+QV+ NLL NA+++T   G + + +     
Sbjct: 326 YELKCMEKELYISTDLDPDII-VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLK-KKD 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           R   + IKD G GI    +  +   F +          G GLGL I + I+  H G++ +
Sbjct: 384 RQCELKIKDTGIGIDAEHLEQLGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRV 443

Query: 459 RSKLREGVEVIAILPN 474
            S+  +G  VI  LP 
Sbjct: 444 ESEKGKGTTVIIKLPA 459


>gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 616

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              + +F++++SHELRTPL ++  + E +        N      ++  I    + ++ +I
Sbjct: 371 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 428

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358
           N++L LSR++ G   +    ++L D V   +    +          +K   I ++     
Sbjct: 429 NDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPHQA 488

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +   + +   +SI D G GI   ++ 
Sbjct: 489 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 547

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL I++ I+  H G+    S    G      LP   + 
Sbjct: 548 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPYEAIS 607

Query: 479 NF 480
             
Sbjct: 608 EE 609


>gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
 gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R  +EE  L KSR  F+A++SHELRTP++ + G+SE I  +      +E  KE    I+ 
Sbjct: 355 RDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKEIAQVIYD 412

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
               +  L+NE+LDL+R+EAG  +L   ++++++     +   Q  A+EK+I++      
Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKV 472

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                   D   M QV+ NL+ NA++ T   G V + +  +     ++S++D G GI + 
Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDTGAGIPKE 531

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           ++P V   F +   A    + G GLGL IA++I+  H G   + S+L EG      LP 
Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590


>gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 680

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 155/351 (44%), Gaps = 29/351 (8%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   V L    ++  L     ++  +  +    +   +L     + ++L       L+  
Sbjct: 329 LNLIVGLVAASIMATLYLSRDLARPLEKLRDYALTVKSLESPQMVPHNLKIREFDQLA-- 386

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              D ++  L       +   K+A+  N  K  FL ++SHELRTPLN I+GF + ++   
Sbjct: 387 EAIDSMVERLRSWAEELEVASKQAQVANQLKDEFLRNISHELRTPLNGIIGFLQFVQDGD 446

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + E   E++   + +  HLLN+IN+ILD+++IE+G   +    I+L  ++ E + +
Sbjct: 447 CDDRDEEM--EFVQRAYDAAIHLLNIINDILDIAKIESGTLSMMLETINLTQVIEEAVDL 504

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397
             +  ++K +E+          V+AD   ++QV LN+LSNA+KFT   G++ +++   S 
Sbjct: 505 QVVEVEQKGLELILPDLKEPIMVYADPDKLKQVFLNVLSNAIKFTDS-GKITISIRLESV 563

Query: 398 ----------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
                                      ++I+D G GI + +   +   F     +     
Sbjct: 564 LLNNGASYNGNAVYNMAQVTGTKDWVVVTIEDTGIGIDQEQQDKLFQPFVMADGSTTRKY 623

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDN 485
            G GLGL I++++M    G   + S  + +G  +   LP  ++     +++
Sbjct: 624 GGNGLGLAISRNLMQLMAGTISLYSAGINQGTTLTIALPAKQLPGGSIKED 674


>gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 888

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 15/261 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 487 ITELEMIKRELQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITES----DDA 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   +  + + LL LINEILDLS+IE+G  E S    SL ++ +E       R  
Sbjct: 543 EERKTYYQIVEANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRTP 602

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           E  +++  +       +  D+  + QVI NL+ NAVKFT  G    +  G+         
Sbjct: 603 E-GVQLVYEPSDESLRIETDKNRVFQVISNLIGNAVKFTKEGS---IKYGYELVDGQIVF 658

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GGQ  + S + 
Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGQISVSSIVG 714

Query: 464 EGVEVIAILPNTRVLNFIPED 484
            G      LP +      P++
Sbjct: 715 VGTTFTFTLPYS--TQETPKE 733


>gi|58265008|ref|XP_569660.1| protein-histidine kinase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57225892|gb|AAW42353.1| protein-histidine kinase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1390

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   + + R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 804  SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        +E +  +      LL +I++ILD+S+IEAGR  + +   SL   V   
Sbjct: 864  ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L ++A +  +++   +DP++   +  D   +RQVI NL+ NAVKFT   G+V ++  
Sbjct: 920  LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978

Query: 395  WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                            + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 979  VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +    G   + S+  +G      
Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061


>gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1057

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 15/265 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D+  +  VA+ L+   +     + N  K  FLA +SHEL+TPL A+LG S +++ + +
Sbjct: 323 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 380

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L++    +Y   IH+SG+HL+ ++N+ILDL+RIE G+ EL+   +++  +    +  +
Sbjct: 381 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCDRALEAV 439

Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
               Q+ +I+             +I+P L ++ ADE  +RQ+++NL+SNA KFT  GG +
Sbjct: 440 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYM 499

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V          ++ D G GI E +   +   F Q    +    +G GLGL + Q + 
Sbjct: 500 GLRVNRWED-WVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLA 558

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG     S  R+G E   +LP 
Sbjct: 559 RLHGGDISFISHQRKGTEFTLLLPP 583


>gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
 gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1271

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              + + +AE+   AKS F+A++SHE+RTPLNA++GFSE++         +     YI  I
Sbjct: 790  LKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSARA----QDSKAASYINSI 845

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              SG+ LL LIN+ILD+S++EA   E   +  S+  ++ E + +   R +  +I++   I
Sbjct: 846  KTSGKALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFI 905

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410
                   +  D   +RQV+LNL+ NAVKFT  G   + V     +      YIS+KD G 
Sbjct: 906  AADTPKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCEAVNDERVDLYISVKDTGI 965

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI + E+  +  +F Q +    +   G GLGL I+  ++   GG+  + SK+  G     
Sbjct: 966  GIPKEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTV 1025

Query: 471  ILPN 474
            ILP 
Sbjct: 1026 ILPA 1029


>gi|163801626|ref|ZP_02195524.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
 gi|159174543|gb|EDP59345.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
          Length = 986

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 22/360 (6%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            + +S +       A  LS     +A+  +      +  +  A + A   +    +    
Sbjct: 357 VVYLSVVKRLAEYSAALLSVAQGNLAVELEVRGKDELAHMGQAIITARNTAQALKVVAEG 416

Query: 208 FKSNVKILSCQAEKDDLI-----AELEVAKSLSDE-------TRKRAEEENLAKSRFLAS 255
                + L    E+ + +     ++L+ A    +E        R++AE+ + AKS FLA+
Sbjct: 417 EAQAKRELEEHKEQLEELVGQRTSQLKQANRRLNEEALNHAKARQQAEQASRAKSAFLAT 476

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N +LG + ++    + P+     K Y   I+RSG+ LL ++N++LD S+IE
Sbjct: 477 MSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIE 532

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374
           AG  E+      L  +V +   ++  +AQEK +     I+  +   W  D   + QV+ N
Sbjct: 533 AGHLEIRCLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSN 592

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT  G   ++V++           + D G GIA+ +  T+  +F Q    +  
Sbjct: 593 LVGNAIKFTEEGEVDIYVSLNPEDESQVLFEVTDTGIGIAKKDQKTLFDAFTQAESGMH- 651

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
              G GLGL I++ I+   GG+  + S   +G  +   +P        P +       +C
Sbjct: 652 QTGGTGLGLAISRRIVQAMGGELNVDSDEGQGSRLWFSIPLE---ESEPVETVSIANARC 708


>gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1]
 gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           gasseri ATCC 33323]
 gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1]
          Length = 621

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              + +F++++SHELRTPL ++  + E +        N      ++  I    + ++ +I
Sbjct: 376 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 433

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358
           N++L LSR++ G   +    ++L D V   +    +          +K   I ++     
Sbjct: 434 NDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPHQA 493

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +   + +   +SI D G GI   ++ 
Sbjct: 494 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 552

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL I++ I+  H G+    S    G      LP   + 
Sbjct: 553 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPYEAIS 612

Query: 479 NF 480
             
Sbjct: 613 EE 614


>gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 905

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 15/251 (5%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R R  E +  K+ F+ ++SHELRTP+ +I GF++++ +  +GP+ NET +E++  I  + 
Sbjct: 656 RTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPV-NETQREFLNIIQSNA 714

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + ++ +IN++LD+++IE G  EL    I + + + + ++ LQ +  E+   +   +   L
Sbjct: 715 ERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSLPAGL 774

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------SGRGQYIS 404
             V AD     Q++ NL+SNAVK+T  GG + +                    GR   I 
Sbjct: 775 PLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRYIQID 834

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GIA  ++P +   F +    +K    G GLGL + + ++   GG+  + S++  
Sbjct: 835 VRDTGVGIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVESRINV 894

Query: 465 GVEVIAILPNT 475
           G     +LP  
Sbjct: 895 GSTFSFVLPAA 905


>gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 912

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 9/309 (2%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               + L  +        + + + +    V+++      DD   +        ++   +A
Sbjct: 166 QAAKLYLVKLFNYFTYLLSGLAFSVLALIVELMLQSKRSDDKHLQAIQLTKALEQNIIKA 225

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E    AK+ FLA+MSHE+RTP+N I+G   +I+   +  +      +Y+  + RS   LL
Sbjct: 226 EAATKAKTEFLATMSHEIRTPMNGIIGLGHLIQNTVLDQI----QSDYVRKMLRSADSLL 281

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           ++IN+ILD S+IE+G  E+ +    L  ++ +  ++ + RA EK +      D  L  ++
Sbjct: 282 SIINDILDFSKIESGSIEIEQRDFHLDSLLEQVFVLNESRAIEKGLTFTIDRDFRLQDAL 341

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIP 418
             D   + Q+++NL+SNA+KFT   G V ++V             S+KD G GI   +I 
Sbjct: 342 EGDSFRLNQILVNLVSNAIKFT-EHGAVSLSVAQIERFKDPWIRFSVKDTGVGIQPDKIE 400

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           ++  +F Q   +      G GLGL I + +    GG+  ++S+L  G E    LP     
Sbjct: 401 SLFEAFKQEDSSTTRKYGGTGLGLAITKQLSDLLGGEIFVKSELGTGSEFRIELPLHPAN 460

Query: 479 NFIPEDNHE 487
             +   + E
Sbjct: 461 TELRSASAE 469


>gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 422

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 15/305 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           LA +          +    F + V      A  +     L+   +  +       + +  
Sbjct: 118 LAEVTEALGGTVGALLQAGFATWVTSEMHLAASESNHRALQQQNAELERAIAHLRDVDQL 177

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPL +I+GFSE++     GPL NE   EY   I   G+ LL LI +I
Sbjct: 178 KSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPL-NEEQTEYANMILDRGEELLRLITQI 236

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L++S++E G   L      L D+V        + A   ++ + +     L  +  D   +
Sbjct: 237 LEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRAHVNLVRDFADDLPLMLVDPDKV 296

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTV--------------GWTSGRGQYISIKDNGPGIAE 414
            QV++NL++N +KF    G V V                G        +S+ D G GI E
Sbjct: 297 LQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEEDFFGEEVADAMRVSVSDTGIGIPE 356

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +  +F Q   +      G GLGL I + ++  HGG+    S +  G      LP 
Sbjct: 357 DQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIEAHGGEIWAESIVGVGTTFHFTLPL 416

Query: 475 TRVLN 479
                
Sbjct: 417 AEGAE 421


>gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains [Bradyrhizobium
            sp. BTAi1]
          Length = 1695

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 164/390 (42%), Gaps = 24/390 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +   L+ +I   +      L+         L +     +   + +++LS F      FL 
Sbjct: 871  KRQRLISEIPSDVIPVGSALLRAVPKNLVVLPVLFENQVKAVIELASLSPFTTSQMTFLE 930

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + +   +I +    +  L      A +        L ++N ++     +  +   
Sbjct: 931  QLTDSIGIVLNSIEATMQTEGLLKQSQQLA-AELQAQQRELQQTNEQLEQKAQQLAERNV 989

Query: 227  ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN+IL   + +     
Sbjct: 990  EVERKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPD 1049

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L  +   E+   IH +G  LLNLI++ILDLS+IE+G   +    I   +++       
Sbjct: 1050 GNLTMKQV-EFARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPF 1108

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ + +     +DP+L+  +  D K ++QV+ NLLSNA KFTA GG V + V    G
Sbjct: 1109 RHEAENRLLSFNIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALG 1167

Query: 399  RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                               + D G GI + +   +  +F Q          G GLGL I+
Sbjct: 1168 GWSAEHPVLNTAPAVIAFEVSDTGIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAIS 1227

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + +    GG+  ++S   +G      LP  
Sbjct: 1228 RELANLLGGEIHLKSAPGKGSTFTLYLPLK 1257


>gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 503

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      +  R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 109 RVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 164

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 165 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 224

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 225 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 281

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 282 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 337

Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490
           S+  +G    A+LP     ++  P  +  + +
Sbjct: 338 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 369


>gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 11/258 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I E +  +S   + + +AEE N  K+ FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 176 QIIDERKKLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADT----E 231

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    KE+   I+ +   LL ++++ILD+S+IEAG  +L  +   L D++ E     +++
Sbjct: 232 DIAEKKEFCNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMK 291

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A    ++I             D K ++Q++ N LSNA+K T   G + +T G T  +G  
Sbjct: 292 AAG-RLDIRIHKPGQGYMAELDTKRVKQILNNFLSNALKHTQE-GYIDITYGVTE-QGIE 348

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI + ++P +   F +      S  QGVGLGLPI +SI    GG   + S+ 
Sbjct: 349 IKVTDTGCGIPQDKLPVIFERFEKVD----SFTQGVGLGLPICKSIAECMGGSIGLTSEA 404

Query: 463 REGVEVIAILPNTRVLNF 480
             G  V   LP +     
Sbjct: 405 GVGTTVWVTLPCSTAPTP 422


>gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 536

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 16/289 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L K  ++  S        I    +AK   +  + +AE  + AKS FLA MSHE RTP+N 
Sbjct: 120 LMKDELRERSISRSIRYAIERYRLAKD-LENEKLKAEAASKAKSEFLAVMSHEFRTPMNG 178

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G  E+++ E  G  + E        +     + L LIN++LDLS+IE+   EL    +
Sbjct: 179 IIGGLEILKNEPAGDSSREIQ----SMMRECAFNQLELINDVLDLSKIESNSVELEIGPV 234

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L D++   +  L  +A+ K+I++   +DPS+  S  +D + +RQ++LNL+ NAVKFT  
Sbjct: 235 CLSDVITSTMGTLGFKAESKSIKLESFVDPSVPNSFRSDARRIRQILLNLVGNAVKFTDS 294

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V + V  + G     ++ D G GIAE +I  V  SF Q   + +   QG GLGL I 
Sbjct: 295 -GEVKLKVTSSLGGMLEFTVTDTGIGIAEADIKKVFESFSQVDGSYQRRYQGTGLGLTIC 353

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           + +    GG+  + S+L  G +    +P          + HE+ + + +
Sbjct: 354 KRLTRILGGEIRVESQLGVGSKFSVTIPI---------EPHENIEKRGF 393


>gi|189197047|ref|XP_001934861.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980809|gb|EDU47435.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1326

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 709 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 768

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 769 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 824

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 825 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 883

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 884 MAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 943

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 944 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 987


>gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3]
 gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1406

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I +   A    +E  + AE+ N  K++FLA+MSHE+RTP+N I G  +V+  + +     
Sbjct: 893  ITDNRNAFMELEEKGQAAEQANREKTQFLANMSHEIRTPMNGIFGMLDVLAYQEL----T 948

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  +  +  I  S   L+ L+++ L+LS+IE G  E + + ++L+ I+   +I    RA+
Sbjct: 949  QEQRLLVDSIRSSSFQLMRLLDDTLNLSKIEQGELESTPTTVNLLKIIEPTMIANSSRAR 1008

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SG 398
               I     +  +  + V+AD + + Q+I NLLSNA+KFT  GG V + + W        
Sbjct: 1009 MSKISFSIIVSKNFPTLVYADSQLIMQIINNLLSNALKFTKKGG-VTLKMKWDSTPTSDN 1067

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +S+ D G GI+E +   +   F Q   +      G GLGLP+ Q I    GG   +
Sbjct: 1068 EYLVVSVSDTGIGISEEQKKVIFERFMQAETSTSRYYGGTGLGLPLVQEIARFLGGNVDV 1127

Query: 459  RSKLREGVEVIAILPNTRVL 478
            +S   EG   I  +P   ++
Sbjct: 1128 QSTPGEGSTFIVRIPMQSLM 1147


>gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 592

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTPL AI GF+E + +E     +N   +++   I+   Q +  ++N +
Sbjct: 365 RKDFVANVSHELRTPLAAISGFAETLMME---NSDNPAVQQFARIIYDEAQRMTRMVNSL 421

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS++E+   EL +    L   +   +   + R  EK +++  ++  +   V AD   +
Sbjct: 422 LQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRDRI 481

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NLL NA +F+   G V V           + + D GPGI E E   V   F +  
Sbjct: 482 VQVLMNLLDNATRFSPPDGTVTVRGTLLP-GEILVEVIDEGPGIPEEEAARVFERFYRVD 540

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            A     QGVGLGL I + I+  HGG+  +RS    G      LP  R  + 
Sbjct: 541 KARTRG-QGVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLPGKRATDE 591


>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 795

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 21/291 (7%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +         +L  + ++A   + E R   ++A+  N  KS FLA+MSHE+RTP+N ILG
Sbjct: 242 RTAQLTRANKELEQQAKLANDSAAEARELARQAKAANETKSSFLANMSHEIRTPMNGILG 301

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              ++E       N     + I     S + LL ++NEILD S+IEA   ++ ++   L 
Sbjct: 302 MLNLLED----MDNPADQADLILTAQDSAKSLLEIVNEILDFSKIEANAIDIEKTEFDLR 357

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
           D +     ++ L A +K +E+  +I   +   +  D   +RQ+ +NLL N++KFT   G 
Sbjct: 358 DSIYGATDLVSLTAHDKGLELVAQIASDVPRYLIGDPLRIRQLCINLLGNSLKFTKE-GT 416

Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   + +          I D G GI   ++ T+   F Q   +      G GLGL 
Sbjct: 417 VMLAVSKAAQQPRNATRLRFEISDTGMGIPPEKVDTLFDPFSQVDSSTTRNFGGTGLGLS 476

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           I + +     G+  + S + EG      +        + ED+ +S   K +
Sbjct: 477 ICKKLAELMSGEIGVTSVVGEGSVFWFEI-------EVEEDSSKSKIEKSH 520


>gi|238917551|ref|YP_002931068.1| two-component system, OmpR family, sensor kinase [Eubacterium
           eligens ATCC 27750]
 gi|238872911|gb|ACR72621.1| two-component system, OmpR family, sensor kinase [Eubacterium
           eligens ATCC 27750]
          Length = 438

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 148/304 (48%), Gaps = 12/304 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           ++  +     +  ++ G+LA  +     ++  L ++ ++ +   A+  D + E  V K +
Sbjct: 141 ASSLLSVFGNVFPAVTGILAVIIVVCIVLSQLLTRTLIEPIERMAKNMDSVQEKPVYKEI 200

Query: 235 S---DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +   ++ R + E       ++  F A++SHEL+TPL AI G++E+IE E +   ++E   
Sbjct: 201 APFAEKIRTQHENILAAARSRQDFTANVSHELKTPLTAISGYAELIENEMV---SHEQGI 257

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            +  +I R+ + LL+LIN+I+ LS ++            L + V++C   LQ+ AQ++ I
Sbjct: 258 HFAHEIKRNSERLLSLINDIIRLSELDHSEMPRQYENFDLYEFVKDCAESLQVNAQKQGI 317

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
               +    +  +  ++  +R++I NL+ NA+++   GG V V  G        + + D+
Sbjct: 318 YFSYRGSACM--IRGNKDMIRELIDNLVQNAIRYNKEGGHVEVFAGMV-DGKPRLEVTDD 374

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + +   V   F +   +      G GLGL I + I+  H  +  + S++ +G  +
Sbjct: 375 GIGIPKDQQDRVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDARIYLDSEINKGTVI 434

Query: 469 IAIL 472
               
Sbjct: 435 RIEF 438


>gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004]
          Length = 927

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 997

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 613 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADAEEPEEKE 672

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI  I  +   LL L+ +ILDLS+IE+G  E   S I L  + +E     +LR +
Sbjct: 673 ----EYINIIENNNTLLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQK 728

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + I    +     V  ++  + QV+ N+++NA+KFT   G +       +    Y  
Sbjct: 729 NDAVVIRYLPEMPDCFVNIEKNRLTQVVTNMMNNAMKFTPS-GSITFGYHLKNTDFLYFY 787

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI + +  TV   F +      S  QG GLGL I QSI+ N GG+  + S+  +
Sbjct: 788 ITDTGYGIEKDKKDTVFGRFVKLD----SFSQGTGLGLSICQSIVENLGGEIGVESEPGK 843

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP   V      +  E
Sbjct: 844 GSTFWFTLPYRPVELKSVREQKE 866


>gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
          Length = 936

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
          Length = 939

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10]
 gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516]
 gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis
           KIM 10]
 gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 933

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 587

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 1/227 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F+A++SHELRTP++ I G++E +    M     E    ++  I R  + L  LI
Sbjct: 356 EEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLI 415

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL LS +EA    L  +A+ +   + +   +L  RA EK I +  ++  +L     D+
Sbjct: 416 NDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQ 475

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV++NL+ NAVK+T  GG + +           IS++D+G GI   ++P +   F 
Sbjct: 476 GRLEQVLVNLIDNAVKYTPEGGTIRL-FAEQGETFLRISVQDSGIGIPPRDLPRIFERFY 534

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +        + G GLGL IA+ I+  HGG+  + S   +G      L
Sbjct: 535 RVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTSTPGKGSTFSFTL 581


>gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F]
 gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1]
 gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92]
 gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92]
 gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F]
 gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038]
 gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 930

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 785

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G +    G        + 
Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRFGFGRMDKD-IRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++  +   F +      S  QG GLGL I + I+   GG+  + S+L +
Sbjct: 574 VKDTGIGIESEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629

Query: 465 GVEVIAILPNTRVLNF 480
           G      +P       
Sbjct: 630 GSTFYFTIPYEETGEH 645


>gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
          Length = 1018

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 9/271 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                 +    E++++AE  N AKS+FL+SMSHELRTPLN+ILGF++++      PL+  
Sbjct: 601 EAQRQYEQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLS-P 659

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + ++  I  +GQHLL+LIN++L+L+RIEAG    S   +SL  ++RE   M+   A+E
Sbjct: 660 RQQGFVEHIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARE 719

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWTSGRGQ 401
           +++++ + +      V  D    RQ++LNLLSNA+K+   GGRV +     +   + R  
Sbjct: 720 RDVQLLETLGDDPLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPV 779

Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I+I D G GI       +   F +         +G G+GL I + ++   GG+    
Sbjct: 780 CLGIAISDTGIGIPADRQHRLFRPFERLGQ-ENGPIEGTGIGLMITKELVERMGGEIRFE 838

Query: 460 SKLREGVEVIAILPNTRVLN-FIPEDNHEST 489
           S+  EG      LP  R      P+++  S 
Sbjct: 839 SREGEGTTFFVFLPAHRAEAGTSPKNDARSP 869


>gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 598

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TPL +I GF E ++   +         +++  I    +
Sbjct: 370 RKLE---QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVAV--KFLDIIDIEAE 424

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IEA R + S   I L  I+ E +++L+  A +KNI +     PS  
Sbjct: 425 RLYTLINDILQLSEIEAMRKDDSVMEIDLRQIIDEVVLILKSSADKKNILLEVSTVPSHI 484

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A    ++Q+++NL+ NA+K+    G++ V     +G    ISIKD G GI E     
Sbjct: 485 QIIASRNRIKQMLINLIDNAIKYNVENGKICVKAEKNNGNTV-ISIKDTGIGIPEMHHSR 543

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +          G GLGL I + I+  + G   I S+  +G E I  LP 
Sbjct: 544 IFERFYRVDKGRSRNMGGTGLGLSIVKHIINLYSGDIHIISEPGKGTEFIVKLPL 598


>gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
 gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
          Length = 466

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 13/316 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+   +    I     + I+    +   LS    +  H+   +       
Sbjct: 157 LIYDMGLILAPLAFVMILLTIWIGRKIIIA----ITKPLSQMERVANHMATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  F A++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +   ++   IHR    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---QQQSKFTQLIHREAGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLET 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I   +DP +  V  DE  M+QV+ NLL NA+++T   G + + +     
Sbjct: 326 YELKCMEKELYISTDLDPDII-VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLK-KKD 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           R   + IKD G GI    +  +   F +          G GLGL I + I+  H G++ +
Sbjct: 384 RQCELKIKDTGIGIDAEHLEQLGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRV 443

Query: 459 RSKLREGVEVIAILPN 474
            S+  +G  VI  LP 
Sbjct: 444 ESEKGKGTTVIIKLPA 459


>gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 609

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  + +F+A++SHELRTPL  +  + E +        + +    +I  +    + ++
Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKDIAPRFIQVVQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ I+      + I   +L  +  NI   +KI      + 
Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG +   V   S     +S+ D G GI + ++  +  
Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRKLSD-EIIVSVSDEGVGIPKADLAKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLPLER 600


>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris]
          Length = 1364

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 13/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A   N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 676 GAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG   +
Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            S    G E   ++   R     P+   E+ 
Sbjct: 855 ESVPGRGSEFYFVITLERTDP--PKAQQEAA 883


>gi|170722660|ref|YP_001750348.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
 gi|169760663|gb|ACA73979.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
          Length = 643

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  +   AE + A +   + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 223 LGHLARHINNLASALEQASAEQKQAIAQLIQAREEAEQANGAKSEFLAMMSHELRTPMNG 282

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         EY      S  HLL +IN+ILD SRIE    +L     
Sbjct: 283 VLGMLQLLETTQLTS----EQAEYTAVASESTGHLLKVINDILDFSRIERTTLQLEHIDF 338

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ +++  ++        V  D   +RQ++LNL+ NA+KFT 
Sbjct: 339 NLGELIASSVQSFQHSAQQRGLDLQLQLPTQSERLQVVGDPTRIRQILLNLVGNALKFTE 398

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G+V V   W +   Q +    S++D G GI    +  +  +F Q   +I     G GL
Sbjct: 399 R-GQVQVEARWQALDRQTLWFTCSVRDTGIGIDSERLEMMFVAFQQADSSISRRYGGTGL 457

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL IA+++    GG+    S    G      +P        
Sbjct: 458 GLSIARTLAERMGGKLRGESHEGLGSTFTLEMPLALASPAS 498


>gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 798

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 11/262 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D+ +K A+E + AKSRFLA+MSHE+RTP+  +LG +E +    +   + E     + 
Sbjct: 284 QELDDAKKAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSRDLDDQDAE----LVK 339

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I+ SG+ L  ++N++LD+S+IEAG+ EL     + I+ + + + +L   A +K +E+  
Sbjct: 340 TIYSSGESLQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKKGLELTT 399

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKD 407
               ++  ++  D   +RQ+ILNLLSNA+KFT   G + V + W    T+     +S+KD
Sbjct: 400 VTHTAVPSTLTGDAGRLRQIILNLLSNAIKFTGD-GHIVVDMNWLPTNTTSGNLIVSVKD 458

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G G+ +     + T+F Q   +      G GLGL I + ++    G   +R     G  
Sbjct: 459 SGIGLDDAAKNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDNEDHGSI 518

Query: 468 VIAILPNTRVLNFIPEDNHEST 489
               +P   +    P + H +T
Sbjct: 519 FTVTIPFKSIA-ISPVEPHATT 539


>gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1626

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 8/266 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             + I +   A +     ++RAE    AKS FLA+MSHE+RTP+NAILGF+ +I+ + + P
Sbjct: 865  LEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRTPMNAILGFAHLIKRDPLTP 924

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                     +  +  +  HLLN+IN+ILD+S+IEA + EL      L  I+     ++  
Sbjct: 925  SQLAQ----LEKLSAATHHLLNIINDILDISKIEANKMELGVEDFDLARIIDRIAALVAD 980

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--GWTSG 398
                K++E+F  +D   S +  D   + Q++LN++SNA+KFT  G   + V V       
Sbjct: 981  SVLAKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKFTEQGAVDITVRVVDAREDR 1040

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  I+D G G++  ++      F Q   ++     G GLGL I++ ++   GG+  +
Sbjct: 1041 PVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTGLGLTISRQLVELMGGRMGV 1100

Query: 459  RSKLREGVEVIAILPNTRVLNFIPED 484
             S+L  G      +P   V    P  
Sbjct: 1101 ESELGHGTLCWLEIPFE-VSPQAPAA 1125


>gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
 gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
          Length = 612

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +S+ D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 2384

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 28/283 (9%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRA--------------EEENLAKSRFLASMS 257
             ++    A    ++   + A   + E   +A              E+   AKS FLA++S
Sbjct: 1835 QEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVQANHNVKLKEDAAKAKSIFLANIS 1894

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            H+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN+ILD S++EAG
Sbjct: 1895 HDLRTPMTGVIGLSELLKATKL----DAKQDVYVESIRVCADTLLTLINDILDFSKLEAG 1950

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK---IDPSLSSVWADEKGMRQVILN 374
            + ++S   I+L   + E +  L+   ++K +   +    IDP+L  V  D   + Q+ +N
Sbjct: 1951 KMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNLL-VMGDPVRLHQIFMN 2009

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIA 430
            LLSN+ KFT   G V V         + I     + D G GI+E ++  +   F Q   +
Sbjct: 2010 LLSNSYKFTPA-GSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQLVRLFRPFSQADSS 2068

Query: 431  IKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               +  G GLGL I ++I+    GG+  ++SK  EG  V   L
Sbjct: 2069 TARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 621

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              + +F++++SHELRTPL ++  + E +        N     +++  I    + ++ +I
Sbjct: 376 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAP--KFLHVIQDETERMIRMI 433

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358
           N++L LSR++ G  ++    ++L D V   +    +          +K   I ++     
Sbjct: 434 NDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIKREFPHQA 493

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +   + +   +SI D G GI   ++ 
Sbjct: 494 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 552

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL I++ I+  H G+    S    G      LP   + 
Sbjct: 553 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPYEAIS 612

Query: 479 NF 480
             
Sbjct: 613 EE 614


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +     + E  KE    I+     +  
Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 421

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG  EL    + L+  +   I      A+EK IE+  +       +  
Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAL 481

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T  GG V + +   SG G  I ++D+G GI E ++P V   
Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A   +  G GLGL IA++I+  H G   + SKL EG      LP  
Sbjct: 541 FYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            V +     ++     E     +      +  E  +  K  FLA+ SHELRTPLN ++G 
Sbjct: 556 AVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGMIGI 615

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E +     G L+ E  ++ +  I  SG  L  L+N+ILD S++      L      L +
Sbjct: 616 AESMLEGATGTLS-ELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGLRE 674

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           I    + + Q   + K++++   I P L  V ADE  ++Q++ NL+ NAVKFT   G + 
Sbjct: 675 ITEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTER-GSIT 733

Query: 391 VTVGWTS-----------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           V+    S                      +++ D G GI   +I  +  SF Q   +   
Sbjct: 734 VSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGSTAR 793

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              G GLGL + + ++  HGG+  + S    G   I  LP
Sbjct: 794 QFSGTGLGLAVTKQLVELHGGKIWVESIENVGSNFIFTLP 833


>gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 850

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +   +  ++ AE  + AK RFL++MSHELRTPL +I+G++E +  E       
Sbjct: 333 IRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDEH------ 386

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  I++S +HLL ++NE+LD +RI +G++  +     L  ++ E +  +QL+A+
Sbjct: 387 PEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAMQLQAE 446

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG-RGQ 401
           EK++ +    +      ++ D   ++Q++ NLLSNA+KFT  G   + V+    +     
Sbjct: 447 EKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKNELTEL 506

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I+++D G GI E +I  +   F Q   +      G GLGL I +++    GG   I+S+
Sbjct: 507 RITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNIRIKSQ 566

Query: 462 LREGVEVIAILPNT 475
           L +G      +P  
Sbjct: 567 LGKGSTFDVFIPLK 580


>gi|78776617|ref|YP_392932.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78497157|gb|ABB43697.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 896

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 151/306 (49%), Gaps = 11/306 (3%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-EVAK 232
           ++    +   VL   +A  +    S    +         KI    AE  DL  EL E   
Sbjct: 306 IAIILAVLGFVLSNQIAKNIRNLESVLEKVAGDYDSKERKINLHTAEGTDLAYELLEDII 365

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
             +   +  A+E + AKS FLA+MSHE+RTPLN I+GF+E+++   +     +   E++ 
Sbjct: 366 EQTKMDKISAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDSGL----QQEQSEFVD 421

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I +S ++LL +IN ILDLS+IE+ + E+     + I      + +  +RA EK+I +  
Sbjct: 422 IIEKSSENLLEIINNILDLSKIESNKLEIENILFNPIVEFESAVEVYAVRASEKHINLGC 481

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIK 406
            IDPSL   +  D   ++++I+NLLSNAVKFT   G ++V +                I+
Sbjct: 482 FIDPSLEFWLKGDPTKLKEIIINLLSNAVKFTNNAGFINVNIRKIDSDKSTKTRVRFEIQ 541

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G+   +   +  +F Q   +I     G GLGL I+ + +   GG+  + SKL EG 
Sbjct: 542 DSGIGVTSEQKSKIFEAFSQADTSITRKYGGTGLGLTISSNFVELMGGKLDLESKLAEGT 601

Query: 467 EVIAIL 472
                L
Sbjct: 602 TFFFTL 607


>gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
 gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
          Length = 618

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 121/236 (51%), Gaps = 8/236 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL +I  ++E +        N E   E++  I      ++
Sbjct: 373 EKIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--ENKEIAPEFLNVIETETDRMM 430

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-----RAQEKNIEIFQKIDPS 357
            +I ++L+LSR++  R EL +  +++ ++V+  +    +     + +EKN  I   I   
Sbjct: 431 RMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQR 490

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D+  M QV+ N+++NA+K++  GGR+ V +  T      +S+ D G G+   +I
Sbjct: 491 NLWVEIDQDKMTQVLDNIINNAIKYSPDGGRIIVRLMETHTD-LIVSVSDEGLGVPRKDI 549

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           P +   F +   A   A  G GLGL I++ ++  HGG+  + S   +G      LP
Sbjct: 550 PHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605


>gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
 gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1214

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 17/370 (4%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
            R  L++ +      WT+      GT   E+  +      L+     A++  +    + L
Sbjct: 444 ARKKLVIFETLDEPKWTVAG----GTSVDEFTALSDRIVWLVIAGGLAMATTIFVIILIL 499

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               ++  L++Q + + H +                     + +    + S +       
Sbjct: 500 LRKLILNPLNSQVLPTFHAISAGHFDTALDVRG-----NDEMAQVVQGLESLRNRLAYNN 554

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                  ++ +  R+ AE    A++ FLA+MSHE+RTPLNA++G + ++    +G    E
Sbjct: 555 ERERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLG----E 610

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              EY+  I  +G+ LL ++N++LD S+I+AG+ +L ES+  L D++     +++ RAQE
Sbjct: 611 REMEYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQE 670

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQ 401
           KN+ +   + P  +  +  D   + Q+++NL+SNA+KFTA G   V + V          
Sbjct: 671 KNLVLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIEL 730

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I+D G G++  +   +  +F Q   ++     G GLGL I++ ++   GG     S 
Sbjct: 731 EFRIQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSV 790

Query: 462 LREGVEVIAI 471
            + G      
Sbjct: 791 PQVGSTFSFR 800


>gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola]
 gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           Angola]
          Length = 921

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1364

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 11/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 676 GAAQDMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 795 VKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDN 485
            S    G E   ++   +  +     +
Sbjct: 855 ESVPGRGSEFYFVVTLEKAASPKSHQD 881


>gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 183/446 (41%), Gaps = 32/446 (7%)

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
               +F  W             +    +     I    V+     +  I + +  T  T 
Sbjct: 42  VLLVVFGGWVSSCFGFNFNETVIFD--LRFVPLIIAALVYPRSYTLIIIGVAIGLTRFTF 99

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV---------ALSTQ 177
                             +L A     +        +  S   + V          L   
Sbjct: 100 GL-NMAAWVGFLNMSILGVLCAGLNYWMRRSTWRLIIKASVTILAVNIVNTLNIAFLGVI 158

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKS 233
                    + L   +   LSF   +    F+   +      + ++L++E       AK 
Sbjct: 159 PWRYYVAEVVPLTLPIGVILSFLFALILRDFQMEQQRNYQIQQANELLSEQRDKLQKAKV 218

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           + +E  K+    +  KS F+A+MSHELRTPLN+I+  +++I  E    L+ +   +Y   
Sbjct: 219 ILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKELDEDELYQYSDL 277

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+ SG  LL LIN+ILDLS++EAG  E+    +S+ +I +  ++  ++ A++KN+E   K
Sbjct: 278 IYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVTAKDKNLEFNLK 337

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISI 405
           +   +   + +D K ++Q++ NLLSNA KFT   GRV + +           G     ++
Sbjct: 338 VHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHK-GRVLLEISTQHLDRKGQEGDWVVFAV 396

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++ +   +  +F Q + +I     G GLGL I++      GG   + S+  +G
Sbjct: 397 KDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEGKG 456

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491
                 LP        P D+ E+ + 
Sbjct: 457 STFSLYLPM------CPSDSKEADEQ 476


>gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1039

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I   +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++        
Sbjct: 652 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 711

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  +   LL LI++ILDLS+IEAG  E   S I L   +++    L+L+
Sbjct: 712 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 767

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            +  ++++       +  V  ++  + Q+I+NL++NA+KFT+ G    +  G+   G+  
Sbjct: 768 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 824

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  + D G GI + +  ++   F +      S  QG GLGL I ++++ + GG   + S+
Sbjct: 825 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 880

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 881 QGKGSTFWFSLP 892


>gi|32400390|dbj|BAC78684.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 899

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 130/245 (53%), Gaps = 16/245 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+ F+ +MSHELRTP+ AI GF++++ +  +GPL N+T +E++  IH + + ++ 
Sbjct: 650 EADRLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPL-NDTQREFVNTIHSNTERMIA 708

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+++IE+G  +L   ++ L++++   I  +Q     +  E+   I P +  V A
Sbjct: 709 LINDVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIPPGMPLVRA 768

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------QYISIKDN 408
           D   + Q++ NLLSNA+K+T  GG++ V                          ++I+D 
Sbjct: 769 DAHRLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNIRDT 828

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F +    +K    G GLGL + + ++    G+  + S + +G   
Sbjct: 829 GVGIDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQGSTF 888

Query: 469 IAILP 473
             +LP
Sbjct: 889 SLLLP 893


>gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
 gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
          Length = 1410

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 12/277 (4%)

Query: 218  QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
            QA+  D++A     K   +     AEE N AKS FL++MSH++RTP+NAI+G + +    
Sbjct: 996  QADVTDMLAAERKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAIIGMTTLA--- 1052

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 ++    + +  I  S +HLL+LIN+ILD+S+IE+ +  L+   I L D++ +   
Sbjct: 1053 VAHLGDSGRVADCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLPDMLEKLSA 1112

Query: 338  MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ++  +A E  I    + +    +  + D   + Q+++N+LSNAVK+T  GG V       
Sbjct: 1113 IIAPQAGEAGIRFDIRTEGIRHNYFYGDALRIDQILINILSNAVKYTREGGSVMFAAEEI 1172

Query: 397  SGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                Q        ++ D G G+ E  +  +   F +   A     +G GLGL I + ++ 
Sbjct: 1173 PSVRQAGWLRYRFTVSDTGIGMTEEFLEHIFDPFAR--SAGTQRIEGTGLGLSITKGLVD 1230

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              GG+  ++S   EG      L          +   E
Sbjct: 1231 LMGGEISVQSTPGEGSCFQVELECESAKEAEADRKAE 1267


>gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 609

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  + +F+A++SHELRTPL  +  + E +        + +    +I  +    + ++
Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKDIAPRFIQVVQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ I+      + I   +L  +  NI   +KI      + 
Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG +   V   +     +S+ D G GI + ++  +  
Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRKLAD-EIIVSVSDEGVGIPKADLAKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLPLER 600


>gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 660

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 12/254 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E +      ++ R RAE+ +  KS FLA+MSHE+RTPLNAI+GFS+++    M 
Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  +E+I  I+ + + LL LIN+ILDLS+IEAG  EL      L     E    + 
Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 381

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +         +V  D+  + Q++ N ++NA+K+T+ G    + +G+     
Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---MIEMGYEKIDG 438

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E +   V   F +         QG GLGL I ++I+    G+    
Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494

Query: 460 SKLREGVEVIAILP 473
           S+  +G    A+LP
Sbjct: 495 SEFDKGSLFWAVLP 508


>gi|148977411|ref|ZP_01814011.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963363|gb|EDK28628.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 827

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 13/277 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI          +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++    +
Sbjct: 313 EIGHLIKTFNEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 372

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               N   ++++  ++ SG H++ L+NEILD S+IE GR +L E+   L  I+     + 
Sbjct: 373 ----NAEQEKHLKSLYESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 428

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + EK ++     + PS    ++D+  +RQ++ NLL+NAVKFT+  G V V +     
Sbjct: 429 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEMVE 487

Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I ++D G GI++     +   F Q   +      G GLGL I + I     G 
Sbjct: 488 GSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKITQLMDGN 547

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             + S+   G      L   ++    P +  ES  +K
Sbjct: 548 ITVTSEEGIGTSFDVRL---KIQPCQPGEI-ESLPHK 580


>gi|32400396|dbj|BAC78687.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1145

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 527 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 586

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 587 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 642

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 643 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 701

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 702 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 761

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 762 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 805


>gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 708

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 11/267 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+  ++ E      L    R  AE  N  K  FLA +SHELRTPLNAILG+S++++   +
Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKL 366

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P       + +  I R+    + LI ++LD+SRI  G+  ++ + ++L+ ++   +  +
Sbjct: 367 EP---ARTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETM 423

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +L A+ K I++       +  V  D   ++QV+ NLLSNAVKFT  GG++ V++      
Sbjct: 424 RLAAESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKV-DG 482

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI    +P V   F Q   +      G+GLGL I + I+  HGG    +
Sbjct: 483 YAQIVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQ 542

Query: 460 S-KLREGVEVIAILPNTRVLNFIPEDN 485
           S    +G      LP       +PE++
Sbjct: 543 SLGEEQGASFTVRLPI------LPEED 563


>gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
 gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
          Length = 924

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL + + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|153810329|ref|ZP_01962997.1| hypothetical protein RUMOBE_00710 [Ruminococcus obeum ATCC 29174]
 gi|149833508|gb|EDM88589.1| hypothetical protein RUMOBE_00710 [Ruminococcus obeum ATCC 29174]
          Length = 979

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +  ++L +SL   +   +     +       ++  K      +   L  ELE  +    
Sbjct: 528 FIQDNLLTVSLIAGIFFFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 587

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A+  N AK+ FL +MSH++RTP+N I+G   ++E       + E  K+ +  I+ 
Sbjct: 588 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERTKDCLNKINE 644

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+L+N++LD++++E+     S+ +I+L  + +E    L  +A+EK + +  + D 
Sbjct: 645 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLYFQAEEKGLHVIGEHDD 704

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411
            S   VW++   ++++++NL +N++K+  + G ++++   +  +         IKDNG G
Sbjct: 705 YSGIYVWSNAVHLKKILMNLFTNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIG 764

Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++E  I   + T F Q   + +S   G GLG+PI + ++   GG   + SKL EG     
Sbjct: 765 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGIITVESKLGEGSCFTV 824

Query: 471 ILPNTRVLNFIPEDNHE 487
           ILP     N  PE+  +
Sbjct: 825 ILPFKIDTNARPEEKED 841


>gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 590

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY-KEYIGDIHRSGQHLLN 303
               +  F+A++SHEL+TP+ +I GF+E +     G +++    K++   I +    L  
Sbjct: 359 LEQVRKDFVANVSHELKTPVTSIKGFAETLLD---GAIDDPVLSKQFTEIIWKESDRLQM 415

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L+LS+IE  +++L    +SL DI  +   +++ +A+EK + +  + +   S +  
Sbjct: 416 LIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQ-EQGSSVIEG 474

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + ++QV+LNL+SNA+ +T  GG V V +         + ++D G GI   E   +   
Sbjct: 475 DWQRLKQVVLNLVSNAISYTPSGGHVTVALKEQKD-AVVLKVQDTGIGIDPKETLRIFER 533

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I + +   H  +  ++S+  +G E     P  +
Sbjct: 534 FYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPKKQ 586


>gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM
           22836]
          Length = 916

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 13/272 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      + +AE+ +  KS FL++MSHE+RTPLNAILGFS +I        + 
Sbjct: 537 ITELKQIEKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAET----DDQ 592

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   +  +   LL L+NEILD S+IE+G  E          +  E       +  
Sbjct: 593 EKRNYYFNFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCH 652

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
               E+      +   + +D   + QV+ NL+ NA KFT  G   ++  G         +
Sbjct: 653 -PETELIYNNIGAELWIRSDRNRIHQVLSNLIINAQKFTKKG---YIKYGFEVIDNNVKV 708

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+G GI E ++  +   F Q      S   G GLGL I +SI+   GG+  + S+L+
Sbjct: 709 YVNDSGIGIVEDQLDKIFERFMQVD----SNAIGTGLGLAICRSIVERLGGEISVTSELQ 764

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           +G      LP   + N+  E+ +     K Y+
Sbjct: 765 KGSCFTFTLPYEPIRNWEAEEGNSENSIKPYS 796


>gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 1170

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L + +  +   +   D    EL +A+          +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G   S++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                  G GLGL I++ + A  GG   + S   +G     +LP   V         E
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQAPQAPGSE 731


>gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+  I G++E +    +   + E    ++  I    + L +LI ++
Sbjct: 365 RRDFVANVSHELRTPVTVIKGYAEALA-GGLVEEDPERAGRFLEIICSHSERLADLIRDL 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS++E+G  +L  + I L   V     +L+ +A  K I I          V AD   +
Sbjct: 424 LTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRL 483

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NL+ NA+K+T  GG + ++    +     +S+ D G GI   ++P +   F +  
Sbjct: 484 EQVLINLMDNALKYTPPGGTITLSAD-EADGMVRVSVHDTGIGIPPKDLPRIFERFYRVD 542

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A    E G GLGL I + I+  HGG   + S+  +G      L
Sbjct: 543 AARSRDEGGTGLGLSIVKHIIQLHGGNITVESEHGKGTTFRFTL 586


>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1364

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 13/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A   N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 676 GAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG   +
Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            S    G E   ++   R     P+   E+ 
Sbjct: 855 ESVPGRGSEFYFVITLERTDP--PKAQQEAA 883


>gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
 gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
          Length = 740

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              AK  F ++MSHELRTPLNAILGF  ++  +     +++ + EY+  +  S + LLNL
Sbjct: 371 AQKAKEEFFSNMSHELRTPLNAILGFLNILNKQI----SDKKHLEYLRHVGTSSKQLLNL 426

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363
           IN+ILDL++I+ G + +     +  + +++     +    +KNI +   I   L  V   
Sbjct: 427 INDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIG 486

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+ILNLLSNA+KFT  GG + + + +   +   + ++D G G++      +   
Sbjct: 487 DLFRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIV-VQDTGIGMSPDVQDKIFKP 545

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F Q   +      G GLGL I Q ++    G+ ++ S+  +G      +P  ++ +
Sbjct: 546 FVQADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIPMQKISS 601


>gi|125987876|dbj|BAF47077.1| CnNIK1 [Cryptococcus neoformans var. neoformans]
          Length = 1383

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   + + R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 797  SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 856

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        +E +  +      LL +I++ILD+S+IEAGR  + +   SL   V   
Sbjct: 857  ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 912

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L ++A +  +++   +DP++   +  D   +RQVI NL+ NAVKFT   G+V ++  
Sbjct: 913  LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 971

Query: 395  WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                            + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 972  VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1031

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +    G   + S+  +G      
Sbjct: 1032 VNLMSGDLWVESEYGQGSRFYFT 1054


>gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 9/243 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +   ++ ++ +  K+ F+A++SHELRTPL+A+  ++E +       ++ E+ KE++  I+
Sbjct: 227 EMELEKLKQLDKIKTEFVANISHELRTPLSAVKAYTETLLN---MEIDPESQKEFLSIIY 283

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
              + L +L+N++LD + I++G  EL  S  ++ ++V + +  L   AQ++++++ ++ +
Sbjct: 284 EQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKECE 343

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGI 412
                + AD++ + QVI NL+ NA+KF         V + V         I ++DNG GI
Sbjct: 344 D--VEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLED-ILIIEVEDNGIGI 400

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + E   +   F +   ++     G G+GL I + I+  HGG   + S+ ++G      +
Sbjct: 401 PKSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNI 460

Query: 473 PNT 475
           P  
Sbjct: 461 PIR 463


>gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 883

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/400 (29%), Positives = 184/400 (46%), Gaps = 6/400 (1%)

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            A  L+L +                  +      +     LL  V     +   +     
Sbjct: 487 AATLLTLRRNHHRPRGPDESALALAREMEARLARVRANNNLLRAVLESDGSAIAIVCDDG 546

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLDISLAGMLATALSFF 200
                    +AL          L    +  A    T A +   V          TA +  
Sbjct: 547 LIESATAGFAALFGAETGAFDGLPLASLFAAQEGRTIAGLISRVKSEQNETARLTARARG 606

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I   L +  V          +  A+        +  R  AE  + AKS FLA +SHE+
Sbjct: 607 VPIEASLQRLPVGAGKICVRLKEPAADRR--NDELEAARVAAEHASAAKSDFLARVSHEI 664

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+GF+EV+  E  GP+ +E YKEY+ D+H SG H+L+L+N++LDLS+IEAG+ E
Sbjct: 665 RTPLNAIIGFAEVMMEERFGPIGSERYKEYLKDVHASGTHVLSLVNDLLDLSKIEAGKLE 724

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           LS   +    I+ EC+ ++Q +A +  + +   +   L  + ADE+ ++Q++LNLLSNAV
Sbjct: 725 LSFERVDANAIISECVSIMQTQANQGRVVVRLALAQRLPPIRADERSLKQILLNLLSNAV 784

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KF   GG+V V+   T      I +KD G G+++ E+ T L  F Q   A     +G GL
Sbjct: 785 KFNEPGGQVIVSTALTEAGYVVIRVKDTGVGMSDDEVETALEPFKQI--ATSRKVRGTGL 842

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GLP+ ++++  +   F I+S+  EG  +    P  +VL  
Sbjct: 843 GLPLTKALIEANHASFTIKSRKNEGTLIEVAFPPPQVLAA 882


>gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 611

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      ++       + ++
Sbjct: 371 EKIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I  I  +   I   ++  +E+++E  +++      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDRFEMT-KEQHVEFIRQLPDRSLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  +V         YIS+KD G GI + ++  + 
Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEEEELLYISVKDEGIGIPKKDMEKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G  V   LP
Sbjct: 548 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 599


>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
 gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
          Length = 934

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 242 RLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELR 301

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +    L+NE    Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 302 TPLNSIDGFIHLMLRQ--DNLSNE-QNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 358

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +   L + + + + ML   A +K I++       +   +  D    +Q++ NL+SNA+
Sbjct: 359 ETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYGDDVPQYIVGDVLRFKQILTNLISNAI 418

Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V              + S++D+G G++  +   +  SF QG  ++     
Sbjct: 419 KFTPD-GEIIVRARMEQDGMEQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSVTRQFG 477

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    GQ             +G      
Sbjct: 478 GTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFT 517


>gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 569

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 16/278 (5%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + ++++   A++              ++    AEE +  KS FLAS +HELRTPLN I+G
Sbjct: 283 AEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIG 342

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F ++I        + +  +E++ + H+S  HLLNLIN+ILD+++IEAG+ +L   ++ L 
Sbjct: 343 FLKLILDGM--ADDAQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLELGSVELA 400

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           ++ +        +AQ K++    K+  +L    V+ + + + QV+LNL+SNA+KFT   G
Sbjct: 401 ELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHE-G 459

Query: 388 RVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            + V                     +S+ D G G++  +   +   F Q   +   A  G
Sbjct: 460 SIVVNAEIVKKKIDHQHQEFPGLVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGG 519

Query: 438 VGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
            GLGL I+Q ++   GGQ    S     G  V   +P 
Sbjct: 520 TGLGLAISQKLIQAMGGQVEFYSMGEGLGSTVTFTVPL 557


>gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            L +S+F+A++SHEL+TPL +I GF+E ++       ++ET ++++  I +  + L  LI
Sbjct: 347 ELMRSQFVANVSHELKTPLTSIKGFAETLK----FVKDDETREKFLDIIDKEAERLSRLI 402

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL LS IE+    +         ++ E I +++  A  KNI++    D +   ++ D 
Sbjct: 403 NDILVLSNIESN-LAVDMHEFEPGSVIEEVINIMRKTAINKNIKLEF-KDNNSEKIFGDR 460

Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               Q+ LNL+ NA+K++    G+V V + +   +   + +KDNG GI + +I  +   F
Sbjct: 461 DKFHQLALNLIENAIKYSKDTSGKVEV-LSYNEDKYYCLRVKDNGIGIPKEDISRIFERF 519

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +    + G GLGL I + I+    G+  ++S+L  G      +P
Sbjct: 520 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEIYVKSELGVGTCFEVKIP 566


>gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis]
          Length = 611

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 372 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 430 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 490 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 607


>gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01]
 gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01]
          Length = 1005

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + R  AE+ + AKS FLA+MSHE+RTP+N +LG + +++   + PL       Y   I+R
Sbjct: 458 KARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL----QSGYADIINR 513

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG++LL ++N++LD S+IEAG  E+  ++  L  +V++   +++ RA EK +     I+ 
Sbjct: 514 SGKNLLAILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIEN 573

Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAE 414
            +   W  D   + Q++ NL+ NA+KFT  G   + +++           + D G GI  
Sbjct: 574 DVQRYWRGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGIDA 633

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            E   +  +F Q          G GLGL I++SIM    G   + S+  EG +    LP 
Sbjct: 634 SEQACLFDAFTQTDSGRN-KTGGTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLPL 692

Query: 475 T 475
            
Sbjct: 693 E 693


>gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1082

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 152/271 (56%), Gaps = 23/271 (8%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +      +  AE+ N AKS+FL++MSHELRTPLNAI+GF++++          
Sbjct: 581 ISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQLLGR---DSSLT 637

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           + + ++IG I RSG+HLL+LIN +L LS++EAG+ +L+  +  L  +++    M +L+A+
Sbjct: 638 QEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVLEEMFKLQAE 697

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
            K +++    D +L   V  DE  +RQV++NL++NA+KFT+ GG V + V    G     
Sbjct: 698 NKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGG-VTLRVKAVQGEMGES 756

Query: 399 ------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                       +     I+D G GIA  EI ++  +F Q     KS  +G GLGLPI+Q
Sbjct: 757 TRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRKS-LEGTGLGLPISQ 815

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   GG+  + S+L +G      +   RV
Sbjct: 816 QFVRLMGGEIHVSSRLNQGSIFTFDIDVNRV 846


>gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
 gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
          Length = 565

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 300 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 354

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 355 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 412

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++R+ I    + A+E  +E+  +++        D   M QV++NL+ NA++ T     
Sbjct: 413 APLLRKVISNFDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGY 472

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 473 AGKVILKQTIDEAESNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 532

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  H G+  + S+L +G + I  LP  +
Sbjct: 533 IVKNIVEAHNGKISVESELGKGSDFIITLPLYK 565


>gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
 gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
          Length = 936

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L   +   L         L++   +  + Q     L  ++    +   +  +     N  
Sbjct: 418 LTVFIFVLLFLVIVTGVALYRRGAEKRAKQY----LAEQVAQRTAELQDVAQELRAANDV 473

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA++SHE+RTPL AILG ++ +      P   E  K+ +  I R   HL +LIN++
Sbjct: 474 KSQFLANVSHEIRTPLTAILGQTDDLMNGLYEP---EQLKDELAIIQRHSNHLKSLINDV 530

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367
           LDLS+IEA R EL+ S   ++ +V +   M   +A+ KN+ +  +           D   
Sbjct: 531 LDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLRLVLENKVGDEFYTRLDIMR 590

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NL +NA+KFT   G+V + +  T      I +KD G G+   ++  +   F Q 
Sbjct: 591 VKQILINLCANAIKFT-QSGQVLIALNKTEQGIVLI-VKDTGIGMNSSQLKLIFEYFSQA 648

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             +I     G GLGL ++Q + +  GG   ++S+ ++G +    LP  +V +   +
Sbjct: 649 DNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQFSFFLPCAQVSSDQSD 704


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/318 (31%), Positives = 151/318 (47%), Gaps = 23/318 (7%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           V+      I S   + I+ A  L   +S    I       +   L  + +  +L      
Sbjct: 285 VLMKQVSTIESQRFILIAAAVTLLLVISLIVVIFRGYRSKHRLALQLEGKSRELGV---- 340

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                     +  +   AKSRFL++MSHE+RTP+N ++G +E++E   +         EY
Sbjct: 341 -------ANDKLVQVTEAKSRFLSAMSHEIRTPMNGVIGMAELLEGTDLTN----QQGEY 389

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +S   LL LIN+ILD S+IEAGR +L     +L DI+ + +  L LRA EK+IE+
Sbjct: 390 VSLIIKSADTLLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIEL 449

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISI 405
              I P +   +  D   +RQVI+NL+ NA+KFT + G V V +       S       +
Sbjct: 450 TFHIPPDIPDKLIGDPLRLRQVIVNLVGNAIKFTEV-GEVAVDLLLQSISDSDIQLVFEV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D+G GI++ +   V  +F Q   +      G GLGL IA+ +    GG   +RSKL EG
Sbjct: 509 RDSGIGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEG 568

Query: 466 VEVIAILPNTRVLNFIPE 483
                    +  L   PE
Sbjct: 569 STFSFS--ASFGLPEQPE 584


>gi|321253934|ref|XP_003192904.1| protein-histidine kinase [Cryptococcus gattii WM276]
 gi|317459373|gb|ADV21117.1| protein-histidine kinase, putative [Cryptococcus gattii WM276]
          Length = 1390

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   + + R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 804  SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        +E +  +      LL +I++ILD+S+IEAGR  + +   SL   V   
Sbjct: 864  ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L ++A +  +++   +DP++   +  D   +RQVI NL+ NAVKFT   G+V ++  
Sbjct: 920  LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978

Query: 395  WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                            + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 979  VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +    G   + S+  +G      
Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061


>gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 916

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 178/402 (44%), Gaps = 24/402 (5%)

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
               + ++R  +      +G+      L+         L         + ++       +
Sbjct: 401 AEERLALFRRVIDASSQCVGIADGTGRLLYQNRAHARLLGYEDDEIAGMPVA-----RLL 455

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
                 +    +   +     +   +      G + T+ S   ++     ++        
Sbjct: 456 PLDDGGVLAAQIFGMVQDARGLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFT 515

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              ++L    E+A     E +  AE  N AKS FL+SMSHELRTP+NA+LGF++++E   
Sbjct: 516 DFTEELARRNELA-----EAKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLE--- 567

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++ + +I ++G HLL LINE+LDL+RIEAGR +LS   ++L + V +C  +
Sbjct: 568 CDDTLTADQRDNVAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQL 627

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +Q  A  + I +   +   L  V AD   ++QV+LNLLSNAVK+   GGRV +       
Sbjct: 628 IQPLAAARAIVLEMSLPDELV-VRADRTRLKQVLLNLLSNAVKYNREGGRVSL-AAQCRE 685

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D G GIA   +  +   F +   A  SA +G G+GL I + +M   GG+   
Sbjct: 686 GRLRLSVSDTGAGIAPERMAALFEPFERL-GAEASAIEGTGIGLTITRRLMELMGGEIGA 744

Query: 459 RSKLREGVEVIAIL----PNTRVLNFI----PEDNHESTQYK 492
            S++ EG      L    P + VL  +    P    E  + +
Sbjct: 745 ESRVGEGSTFWIELFLDDPASGVLAPLGEVEPGAAPEVVERR 786


>gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
 gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R  +EE  L KSR  F+A++SHELRTP++ + G+SE I  +      +E  KE    I+ 
Sbjct: 355 RDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKEIAQVIYD 412

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
               +  L+NE+LDL+R+EAG  +L   ++++++     +   Q  A+EK+I++      
Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKI 472

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                   D   M QV+ NL+ NA++ T   G V + +  +     ++S++D G GI + 
Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDTGAGIPKE 531

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           ++P V   F +   A    + G GLGL IA++I+  H G   + S+L EG      LP 
Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590


>gi|288940234|ref|YP_003442474.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895606|gb|ADC61442.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1062

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +  F  I   + +           ++ L   +    +     ++ AE  N AKS FLA+M
Sbjct: 483 VGTFAVIFSDVTEQRQAEHELFEYREHLETLVASRTAELALAKQEAERANQAKSLFLANM 542

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTP+NAI+G + ++  E     +    ++ +  I  + +HLL++IN+ILD+S+IEA
Sbjct: 543 SHEIRTPMNAIIGLTHLLGREI----SVPAQRDRLLKIDGAAKHLLSVINDILDISKIEA 598

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+ EL  S  S   ++ +   ++  + Q K ++      P    +  D   +RQ +LN L
Sbjct: 599 GKLELQTSDFSPRVLLDQVSALIAEQVQSKGLDYRVDAGPLPVVLHGDATRLRQALLNYL 658

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT   GR+ +                 + D G GI E     + T F QG  +  
Sbjct: 659 GNALKFTER-GRIQLQARLLEDGNEDALISFEVIDTGIGIPEEMQGRLFTLFEQGDGSPI 717

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
               G GLGL I + I    GG   + S   +G      
Sbjct: 718 RRYGGTGLGLAITRRIAELMGGSAGVESVPGQGSRFWFT 756


>gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 139/308 (45%), Gaps = 19/308 (6%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               I+          ++ +   +    +L +      E  + A   + AK+ FLA+ SH
Sbjct: 231 MLDKISERDTSLREVNINLEKLVEQRTKDLRIQNLALQEAMETANAASKAKTEFLATTSH 290

Query: 259 ELRTPLNAILGFSEVIEL-ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           ELRTPLN I+G+ E I+  +  GP +N+     +  I +S + LL LI +ILD SRIE+G
Sbjct: 291 ELRTPLNPIIGYVEKIQRAQPNGPHSND-----LRLIKQSAEQLLRLIEDILDFSRIESG 345

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS------LSSVWADEKGMRQV 371
             +L    I + ++    + +L  +A++K +++    + +         +  D   +RQV
Sbjct: 346 TLKLENDQIDVEELCESVVKLLSEQAEQKGLDLNYSFNENRELGMPEKDISIDAGRLRQV 405

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +LNL +NA+KFT   G V +               I + D G GI   +   +   F Q 
Sbjct: 406 LLNLTNNAIKFTNE-GSVTIKCSLNHDPSEKADLIIEVIDTGIGIDSQDQDKLFKPFSQL 464

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             +      G+GLGL I Q I+   GG+    S++  G    A +P    L+    ++ +
Sbjct: 465 DSSWTREYGGMGLGLAICQRIVKAMGGRLTCFSEIGRGSRFSAQIPVE--LSERIIESTK 522

Query: 488 STQYKCYA 495
               K ++
Sbjct: 523 QRPQKSFS 530


>gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 817

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 13/279 (4%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + E   LI          +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++   
Sbjct: 311 EDEIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT 370

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +    N   ++++  ++ SG H++ L+NEILD S+IE GR +L E+   L  I+     
Sbjct: 371 PL----NSEQEKHLKSLYESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINS 426

Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +    + EK ++     + PS    ++D+  +RQ++ NLL+NAVKFT+  G V V +   
Sbjct: 427 VYFTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEV 485

Query: 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              S     I ++D G GI++     +   F Q   +      G GLGL I + I     
Sbjct: 486 IEGSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMD 545

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           G   + S+   G      L   ++    P +  ES  +K
Sbjct: 546 GSITVTSEEGIGTSFDVRL---KIQPCQPGEI-ESLPHK 580


>gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 2107

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 149/346 (43%), Gaps = 21/346 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             + + +   F      FL      + +    I +    D  L      A    T     L
Sbjct: 1302 VIELGSFQIFSSIQLAFLDELIESLGIVVATIEATMRTDELLRQSRNLAE-ELTTQQEEL 1360

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260
             ++N ++     +  +  +E+E      +  R+  EE        +  KS FLA+MSHEL
Sbjct: 1361 QQTNEELEEKARQLTEQKSEVERKNQQVELARQELEEKAEQLALTSRYKSEFLANMSHEL 1420

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN++L  S  +       L+++   EY   IH+SG  LL+LINEILDL++IE+G   
Sbjct: 1421 RTPLNSLLILSRQLATNRDNNLSDKQV-EYASTIHQSGADLLSLINEILDLAKIESGTMA 1479

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
            +  S++S   +      + +  A E  +    +    L + +  DE+ +RQV+ NLLSNA
Sbjct: 1480 VEVSSVSFSQLSDYVERLFRQVADESGVVYQIECADELPAAIETDEQRLRQVLRNLLSNA 1539

Query: 380  VKFTAIGGRVHVT---VGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
             KFT   G V +    V   +             S+ D G GI + +   +  +F Q   
Sbjct: 1540 FKFTKK-GEVMLRMSTVKPEADGDYGDEPFLVAFSVSDTGIGIPKDKQRIIFEAFQQADG 1598

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                   G GLGL I++ I    GG+  + S+   G      LP +
Sbjct: 1599 GTSRRFGGTGLGLSISREIAELLGGELDVESEPGRGSTFTLYLPPS 1644


>gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 705

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 10/274 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +S    ++K A+  N AKS FLA+MSHE+RTPLN ILG  +++E        N
Sbjct: 301 ITEKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGILGMLQLLEST----QTN 356

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI     SG++L  LI+ ILDLSRIE G   L     ++  ++ + +        
Sbjct: 357 HQQSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIKHLIDDIVNTFITELS 416

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
            K + I   I   +  V + D   +RQ+I N++ N++KFT   G V +++   +      
Sbjct: 417 SKKLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKFTP-FGSVAISIDSLTSGNTIH 475

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +I I D G GI E ++  +   F Q   ++     GVGLGL I +  +    G   + S
Sbjct: 476 VFIEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVKKQLLAMEGSITVES 535

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
               G +    +P       +PE   +     C+
Sbjct: 536 NESGGTKTCIAIPFKTNEPSLPEYTDKICD-SCF 568


>gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2003

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             DL A+++         ++ AE  + AKS FL+SMSHELRTPLN I+G ++++E     P
Sbjct: 1503 RDLEAKIKERTVELRIAKEAAERASQAKSDFLSSMSHELRTPLNGIMGHAQILERT---P 1559

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 ++E +  I +S +HLL+LIN++L L++IEAG+ +   +   L  +VR  + + ++
Sbjct: 1560 DVPPAWREGLRVIQKSSEHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVDLCRV 1619

Query: 342  RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--- 397
            RA+ K I    +   P+L +V ADEK + QV+LNLL NA+KFT  GG V + V       
Sbjct: 1620 RAEAKGITFSDELRGPALQAVCADEKRLMQVLLNLLGNAIKFTERGG-VSLHVEVLEETV 1678

Query: 398  --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              GR     I+D GPGIA   +  +   F Q      +  +G GLGL I + ++   GG 
Sbjct: 1679 PAGRMVRFRIEDTGPGIAPEHLSRIFEPFEQV-GEQSAKSEGTGLGLAITKKLVQQMGGA 1737

Query: 456  FLIRSKLREGVEVIAILPNTRV-LNFIPEDN 485
              ++S++ EG      LP     L   P + 
Sbjct: 1738 IEVQSEVGEGSVFAVTLPLAEAQLAASPGEA 1768


>gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 939

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 6/275 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  + +        +  ++ L   +    +     ++ A+  N AKS FLA MSH
Sbjct: 429 FLLGISRDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSH 488

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG++++++        +    + +  I RSG+HLL LI++ILD+++IEAGR
Sbjct: 489 ELRTPLNGILGYAQILKR---DKNLDRRQVDGLMVIQRSGEHLLTLIDDILDMAKIEAGR 545

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            EL+ S + L   +   +  ++++A EK +E   ++ P L + V  DE  +RQV+LNL+S
Sbjct: 546 MELNFSDVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRVDEIRLRQVLLNLIS 605

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA++FT   G V + VG+         ++D G GI E  +  +   F Q S A      G
Sbjct: 606 NAIRFTEQ-GSVRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPFEQVSDAR-YRSGG 663

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I++ ++   G +  + S    G      L
Sbjct: 664 TGLGLAISRELVRLMGSEIHVESHHGTGSAFSFEL 698


>gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis]
          Length = 1369

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS+FLA+MSHE+RTP+  +LG +E++     G   +   +EY+ +I  S   LL +IN
Sbjct: 797  RLKSQFLANMSHEIRTPITGVLGMAELLS----GMQLDAEQQEYVENIQSSATSLLTVIN 852

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363
            +ILD S++E+GR ++ E   SL  IV+E   MLQ   + KN++    I   +     V  
Sbjct: 853  DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDIGDGIENDLVVIG 912

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            D   +RQ++ NLL+N++KFT   G V  +V              +++D+G GI +     
Sbjct: 913  DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVTAEKETSESIEVRFTVEDSGIGIQDDVRKK 971

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   F QG  +      G GLGL I ++++    G+  + S +  G      +P  +   
Sbjct: 972  LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNK--P 1029

Query: 480  FIPEDN 485
              P + 
Sbjct: 1030 SGPAEA 1035


>gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1058

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            + + T      +   L   A     + E +        T++ AE  N AKSRFLA+MSH
Sbjct: 466 RWLHWTNRAIFDDRGNLVEYAGVGHDVTERKQTAEALLRTKEEAEAANRAKSRFLANMSH 525

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+G + +     M    ++  + ++  +  +   LL L+N+ILD+S++EAG+
Sbjct: 526 EIRTPLNAIIGMTHL----AMHTREDDKRQRFLATVAHAADSLLGLLNDILDISKMEAGQ 581

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L+        +V   +  L  +A EK +++   + P+L   +  D   +RQ++LNLL 
Sbjct: 582 LSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPALPDCLLGDALRLRQILLNLLG 641

Query: 378 NAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           NAVKFT   G + +                ++ + D G GI   ++  +   F Q   + 
Sbjct: 642 NAVKFTPA-GTITLEAFAEEAEDADNRVYLHLRVTDTGIGIPAEKLELIFNRFEQADNSY 700

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                G GLGL I+  + A   G+    S+  +G     ++P  R
Sbjct: 701 GRQYGGAGLGLSISAQLAALMHGRLWAESRENQGSTFHCLIPFPR 745


>gi|260159588|gb|ACX32464.1| two-component histidine kinase [Fusarium oxysporum f. sp.
           lycopersici]
          Length = 1293

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 14/265 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +I+ L  +   + + R+ AE  N   S FLA+MSHE+RTP+N I+G +++  
Sbjct: 681 ELKRKINQMISNLRDSIQRNTQAREAAELANKTMSEFLANMSHEIRTPMNGIIGMTQL-- 738

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T      +  +E +  ++     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 739 --TFDTDLTQYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 796

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  K+D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 797 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 855

Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            + G+             ++D G GIA+ ++  +  +F Q   ++     G GLGL I++
Sbjct: 856 ESMGQNNVRPGEYAVEFVVEDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 915

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG   + S+  +G E    
Sbjct: 916 RLVNLMGGDLWVNSEHGKGSEFHFT 940


>gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1055

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 5/301 (1%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +  H+    L      A++          +++ + L               A       +
Sbjct: 579 LWRHLAVPVLEEGRLVAVAGVANKDLPYERADRRQLELFMHGMWEHIARRRAMVSLRRAK 638

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             AE  N +K  FLA+MSHELRTPLN +LG  +++     GP  ++  + Y+     SG 
Sbjct: 639 DAAEAANRSKDEFLANMSHELRTPLNGVLGMLQLL----DGPDLSDERRGYLRTAVESGH 694

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +I+++LD+S + AG   L +       ++R+   M+   A+ + + +    D    
Sbjct: 695 ALLRIIDDLLDISALGAGGSGLRDEPFDPAAVLRQVAEMVDPAARRRGLALGLIADALPL 754

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  D   +RQV+ NL++N VKFT  GG V +      G     +++D G GI E ++P 
Sbjct: 755 RVRGDAARLRQVLYNLVANGVKFTHQGG-VDILACPVGGDRLLFTVRDTGIGIPEEKLPV 813

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           V   F Q   +     QG GLGL I +  +A  GG   + S+   G  V   LP   V  
Sbjct: 814 VCEPFAQVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTMESEEGVGTSVHVCLPLPEVDA 873

Query: 480 F 480
            
Sbjct: 874 A 874


>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 728

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 129/261 (49%), Gaps = 18/261 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E  + +    + R+RAE  N AKS FLA+MSHE+RTP+N ++G +E++    +     
Sbjct: 192 ITETILREKELQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMDTDL----T 247

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I +SG+ LL +IN++LD S+IEA +  L E    L   V E +++LQ  A+
Sbjct: 248 EEQNLYANTIRKSGEALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVMLLQPNAR 307

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------- 393
           +K +E+    D  L      D   +RQV+ NL+ NAVKFT   G V V V          
Sbjct: 308 DKELELLVDYDMFLPTRFHGDPGRIRQVLTNLIGNAVKFTEK-GHVLVRVVGMPAAAPES 366

Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                +     I+++D G GIA  +   +   F Q   A     +G GLGL I++ ++A 
Sbjct: 367 PEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGLGLAISRKLIAM 426

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
             G   I S+   G      L
Sbjct: 427 MQGDIWIGSEEGRGSTFGISL 447


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                    +S     +++AE    AK  FLA MSHE+RTPL A+LG +++++   +   
Sbjct: 189 RDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDS- 247

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+     +G++LL+LIN ILDLS+IEAGR E+      L  +VR+   ++ LR
Sbjct: 248 ---QQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLR 304

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A+++ +E       +    V  D   +RQV++NL+ NA+KFT   GRV V +        
Sbjct: 305 ARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPP 363

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G     ++ D G GI   +   +   F Q   ++     G GLGL I++ ++   GGQ
Sbjct: 364 YPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQ 423

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             + S+   G      +P  +  N I + +  ++
Sbjct: 424 ISLVSREGGGSTFTMEIPLLKCENSITKPSRAAS 457


>gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1268

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/274 (33%), Positives = 151/274 (55%), Gaps = 3/274 (1%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F+  + Y   +     L   A+    + E +      +  +  AE+ NLAKS FL+SMSH
Sbjct: 833  FWANVVYTAIRDQSGNLRGYAKLTRDLTERKRLDQELERAKSVAEKANLAKSDFLSSMSH 892

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLNAILGF++++E  +  P + +  +  +  I ++G +LL LINEILDL+ IE+G+
Sbjct: 893  ELRTPLNAILGFAQLLEAGSPPPTDAQKIR--LHQIIKAGWYLLELINEILDLALIESGK 950

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
              LS   ++LID++ EC  M++ +AQ+++I++            AD   ++QV++NLLSN
Sbjct: 951  LSLSREPVALIDVIIECQAMIEPQAQQRDIKLTFIPFDETWFASADRTRVKQVLINLLSN 1010

Query: 379  AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            A+K+    G V V    ++     IS+KD G G+A  ++  +   F +      S ++G 
Sbjct: 1011 AIKYNREHGTVEVKCIESTPERLRISVKDTGEGLAPEKLAQLFQPFNRLGQ-ESSGKEGT 1069

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G+GL + + ++   GG   + S +  G E    L
Sbjct: 1070 GIGLVVTKQLVELMGGAIGVESTVGVGSEFWIDL 1103


>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1387

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 167/395 (42%), Gaps = 25/395 (6%)

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
             +++  +  G    ++ L    +++  +LT     T  IA+ ++ ++  M    +    
Sbjct: 554 NIVVLPVLFEGQVTAVIELASFRSFSEIHLTFLDQLTESIAIVLNTIAASMRTEQLLKQS 613

Query: 168 FPVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             +   L +    +   +      A  L  +          L ++N ++           
Sbjct: 614 QSLAEELQSQQTELTDTNKRLEQQANSLQASEERLKSQQEELQQTNEQLQEKARLLSIQN 673

Query: 226 AELEVAKSLSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+E      ++ R+  EE+          KS FLA+MSHELRTPLN++L  + ++    
Sbjct: 674 KEVERKNREIEQARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNA 733

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L+ E   EY   IH +G  LL LIN+ILDL++IE+G   +    +   D+  +   +
Sbjct: 734 EGNLS-EKQVEYGRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERI 792

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
            +  A ++ +E   +   +L   +  D K ++QV+ NLLSNA KFTA+ G V + V    
Sbjct: 793 FRQVANDRGLEFAVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTAL-GSVTLRVEMAT 851

Query: 396 -----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                       +      S+ D G GIA  +   +  +F Q   +      G GLGL I
Sbjct: 852 GGWDPASESLNRASGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSI 911

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           ++ I    GG+  + S+   G      LP    L 
Sbjct: 912 SREIARLLGGEIQLESEPGRGSTFTLFLPLDAPLP 946


>gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 845

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 8/287 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
             T    F ++  +  K N   +       D   E++  ++L D     A++ N AK  F
Sbjct: 269 TLTGEDRFMHLHLYPVKENAGTIRYVVSLSDRTHEVKTRQTLKD-ALASAQQANTAKRDF 327

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L+ MSHE+RTP+NAI+G + +         N+    + +  I  S +HL++L+N++LD+S
Sbjct: 328 LSRMSHEIRTPMNAIIGMATIAAAHI---QNHGRVADCLHKISFSSKHLMSLLNDVLDMS 384

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQV 371
           +IE+G+  +      L +++   + ++  + + +       +       +  D   + Q+
Sbjct: 385 KIESGKLAVHHEEFDLPNLIDSIVSIMYPQTESQGQHFSVALSGIEEEKLVGDPLRINQI 444

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +LNLLSNA KFT  GG + + V      G      ++ D G G++E     +   F Q  
Sbjct: 445 LLNLLSNARKFTPEGGSIKLEVSQKRKNGGVLMRFTVSDTGIGLSEAFQKRLFKPFEQAD 504

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +I     G GLGL I  +++    G   +RSK  EG      LP  
Sbjct: 505 SSISQKYGGTGLGLAITHNLVTLMNGTIGVRSKEHEGSCFTVELPLA 551


>gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000]
          Length = 609

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 733

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 13/258 (5%)

Query: 224 LIAELEVAKSL---SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           ++ +      L    D + KR  E    K  FLA+MSHE+RTPLN+ILGF+ +++     
Sbjct: 211 ILGQFRQQNKLILKLDASEKRLTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRRDKD 270

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P + E    +I  I ++G++L+ +IN+ILDLS+IEAG   + ++  S+  ++     + +
Sbjct: 271 PDSAE----FIESIQKAGENLMAIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFK 326

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            R  EK +++   +  ++  ++  D   + Q+++NL+ NA+KF+  GG + V V      
Sbjct: 327 ERVNEKGLQLNCSVASNVPDTLIGDATRLTQILVNLIGNALKFS-DGGMIEVLVSRVWAD 385

Query: 400 GQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           G  I     +KD G GI+  ++  +   F Q   +I     G GLGL I ++++   GG 
Sbjct: 386 GSNIQLGVKVKDTGIGISNEKLDKIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGN 445

Query: 456 FLIRSKLREGVEVIAILP 473
             + S   +G E    +P
Sbjct: 446 IEVHSIPGKGSEFAFYIP 463


>gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470]
          Length = 609

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS
 gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 1035

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1402

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 658 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 713

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 714 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 773

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 774 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 832

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 833 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 892

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            S    G E   ++   +      + +  S
Sbjct: 893 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 922


>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1897

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 155/355 (43%), Gaps = 24/355 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             +S+S+L +F   +  FL    + + +   +I +    +  L      A          L
Sbjct: 1123 VISLSSLHDFEPAHLTFLEQLTMGIGIVLNSIEATMQTEELLTQSQELA-GELQEQQKAL 1181

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260
             K+N ++     +  +   E+E      D+ R+  EE        +  KS FLA+MSHEL
Sbjct: 1182 QKTNEELAQKAQQLAERNVEVERKNEEIDQARRAVEEKAAELALTSRYKSEFLANMSHEL 1241

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN+IL   + +       L+ E   E+   IH +G  LLNLI++ILDLS+IE+G   
Sbjct: 1242 RTPLNSILILGQQLSDNPDRNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVS 1300

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
            ++   +S   ++       +  A+ +++      D  L   ++ D K ++QV+ NLLSNA
Sbjct: 1301 VNAEDVSFNAVLEAIARPFRHEAERRDLAFEMSFDADLGRTLFTDSKRLQQVLKNLLSNA 1360

Query: 380  VKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             KFT   G V ++V                +       + D+G GI   +   +  +F Q
Sbjct: 1361 FKFTRE-GYVRLSVKPAATKWGPDHPTLAEAQTVVAFEVDDSGIGIPLDKQKIIFEAFQQ 1419

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
               +      G GLGL I++ +    GG+  +RS+   G      +P       +
Sbjct: 1420 ADASTSRKYGGTGLGLAISRELAHLLGGEIQLRSEPGRGSTFTLYIPLRYAAPSL 1474


>gi|309888|gb|AAA03213.1| virulence regulator protein [Ralstonia solanacearum]
          Length = 638

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP- 70
           +   + P  + LGL   + ++ D     L          I    VL V  +  ++  +  
Sbjct: 29  LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSDSR 88

Query: 71  -IFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     G+ W     
Sbjct: 89  LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++A             
Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L    +F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 207 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +ET    +  +    Q +  L 
Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLPSGAQTIDLLF 315

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEVKAPLA 492

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 493 AQPRSEQK 500


>gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
 gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
          Length = 1430

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 11/261 (4%)

Query: 218  QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
            +A+  D++A     K   +    RAEE N AKS FL++MSH++RTP+NAI+G + +    
Sbjct: 1031 RADVTDMLAAERRTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMTALAMAH 1090

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 + E   + +  I  S +HLL+LIN+ILD+S+IE+ +  L+   IS+ +++ +   
Sbjct: 1091 LG---DQERVTDCLQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLSA 1147

Query: 338  MLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ++  +A+   +    +    +    + D   + Q+++N+LSNAVK+T  GG V       
Sbjct: 1148 IMSSQARSAGLTFSIQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAEEI 1207

Query: 397  SGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
               G+       ++ D G G+ E  +  V   F +      +  +G GLGL I + ++  
Sbjct: 1208 PPVGRDCARYRFTVSDTGVGMTEEFLNHVFEPFTR--SRQTTRVEGTGLGLSITKGLVNL 1265

Query: 452  HGGQFLIRSKLREGVEVIAIL 472
             GG   + S + +G      L
Sbjct: 1266 MGGAISVESVVHQGTVFQVEL 1286


>gi|32400386|dbj|BAC78682.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|32400382|dbj|BAC78680.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 684

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            +   +   AE   A+ + ++  R+ AE  N  K  FLA +SHELRTPL ++LG+S+++ 
Sbjct: 261 LEDITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILR 320

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            + +   +++     +  I R+    + LI +ILD+SRI  G+  L+ SA++LI ++   
Sbjct: 321 SKKL---DDKATSRALEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAA 377

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  ++  A+ K I++   +D S+ SV+ D   ++Q++ NLL+NA+KFT  GGRV V +  
Sbjct: 378 LEAVRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSI 437

Query: 396 TSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             G  Q        I + D G GI+   +P V   F Q       +  G+GLGL I + +
Sbjct: 438 VYGEEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHL 497

Query: 449 MANHGGQFLIRSK-LREGVEVIAILPN 474
           +  H G    +S    +G      LP 
Sbjct: 498 VELHKGTIFAQSPGSGQGATFTVRLPL 524


>gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 142/267 (53%), Gaps = 8/267 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            ++    + E      E EVA   +D    R  A     AKS FLA+MSHE+RTP+N ++
Sbjct: 217 AIRTRDARIEAHVKGLEGEVAARTADYVAARDEAVAATAAKSDFLATMSHEIRTPMNGVM 276

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             +E++  E++        + +   I +SG+ LL +IN+ILD S+IEAG+ E+  + + +
Sbjct: 277 VMAELLAAESL----PAKARRHAQTIAKSGRSLLAVINDILDFSKIEAGKLEVETTEVDI 332

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
           +D+  + I + Q +A+EK +E+     P    +  AD   + QV+ NL+SNA+KFT   G
Sbjct: 333 LDLCDDIITLFQAKAREKGLELAVSAHPDAPRIVPADPVRLGQVLSNLISNALKFTDQ-G 391

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V V +    GR   +S++D G GIA  ++P +  +F Q          G GLGL IA+ 
Sbjct: 392 LVAVAIEPGPGRSWKLSVRDTGIGIAADKLPKIFAAFSQEDQTTTRRFGGTGLGLTIARR 451

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           ++   GG+  + S+   G   + ++P 
Sbjct: 452 LVEAMGGEVSVTSQQGRGTRFLVVMPA 478


>gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SM4/1]
          Length = 596

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 8/248 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +   ++AE+ N AKS FL+ MSHE+RTP+N I+G   +I ++ +G  ++   ++ I
Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ S +HLL LIN++LD+S+IE+GR E+          +     ++  +A++K +   
Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
                 +   ++ D   + Q+++NLLSNA+KFT  GG + + +               + 
Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKFEVS 519

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E     +   F Q    I     G GLGL I++       G+  + S++ +G 
Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579

Query: 467 EVIAILPN 474
                +P 
Sbjct: 580 TFTLTMPL 587


>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1959

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 9/246 (3%)

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                     R RAE  N AKS FLA+MSHE+RTP+NAI+G + ++  ++   +     +E
Sbjct: 1212 QLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDSTDTV----QQE 1267

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
             +G +  +  HLL++IN+ILDLS+IE+G+ EL ++   +  ++     ++  RA+ K +E
Sbjct: 1268 RLGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGERARAKGLE 1327

Query: 350  IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISI 405
            +        +S+  D   + Q ++NLLSNAVKFT   G V V                 +
Sbjct: 1328 LVLDSHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQ-GSVVVRAEIVHEDPDGLTVRFEV 1386

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G G+A  +I  +  +F Q   +      G GLGL I + +    GG+  + S    G
Sbjct: 1387 DDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGVSSAPGVG 1446

Query: 466  VEVIAI 471
                  
Sbjct: 1447 SRFWFT 1452


>gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 609

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|32400380|dbj|BAC78679.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|329954548|ref|ZP_08295639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328527516|gb|EGF54513.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 637

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                  L  ELEV+++   E + RAEE N  KS FLA+MSHE+RTPLNAI+GFS+V+  
Sbjct: 386 FFYRTKRLKDELEVSEAALREAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLS- 444

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G    +  + Y   I  +   LL LIN+ILD+SR+EA R  L+     ++ +  +  
Sbjct: 445 --AGDTAIDDQRGYFEIIKANSDLLLRLINDILDVSRLEADRVTLTLEKCDVVQVCMQVT 502

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             +  +A+  +  I  +       +  D + ++QV++NLLSNA KFT   G + + +   
Sbjct: 503 ASV-TQARRSSNRIVFESAADSLEIRTDIQRLQQVVINLLSNADKFT-ENGTITLKLEPD 560

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              R    S+ D G GI   +   V   F +         QG GLGL I + I+   GG+
Sbjct: 561 MRNRTALFSVSDTGCGIPPEKRKRVFERFEKL----NEYAQGTGLGLSICKLIVEKWGGR 616

Query: 456 FLIRSKLREGVEVIAILPN 474
             I S+   G   +   P 
Sbjct: 617 IWIDSQYTRGARFVFTHPL 635


>gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 908

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 127/245 (51%), Gaps = 9/245 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            ++  + A+  N AK+ FL+SMSH++RTP+NAI+G + + +     P   E   + +  I
Sbjct: 385 LEDAYQIAKIANSAKTDFLSSMSHDIRTPMNAIVGMASIAQAHINFP---EKVSDCLHKI 441

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQK 353
             S +HLL+LINE+LD+S+IE+G+ +L    ++L +++ +   M +    EK  +     
Sbjct: 442 KISSRHLLSLINEVLDMSKIESGKIDLMLEDVNLPELIDDVSDMCRALIDEKQQDFSIVI 501

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDN 408
                  V AD   ++Q+ +NL+SNAVK+T  GG++ + +                  DN
Sbjct: 502 GRIKHEKVVADGDRLKQIFMNLISNAVKYTPRGGQISLVINELDSLILDKGRFEFKFYDN 561

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++E  +P +   F +      +  QG GLG+ I ++I+    G   + S+L +G   
Sbjct: 562 GIGMSEDFLPHIFEPFSRAEDTRINKIQGTGLGMAITENIVNMMNGTIEVESQLGKGTIF 621

Query: 469 IAILP 473
              +P
Sbjct: 622 TVSIP 626


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G +   LSF T       + ++ ++   A++  +  E +  +    + ++ AE  +  KS
Sbjct: 513 GRVLGTLSFGTRTRKAFSEDDLSLMKAVADQVSIAMERKTTEEKLQQAKQAAEAASRTKS 572

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +FLA+MSHELRTP+  +LG  ++    T    +     +YI   +RSG+ LL ++N+ILD
Sbjct: 573 QFLANMSHELRTPMTGVLGMLDLALQST----SELQQSDYIRTAYRSGRSLLQILNDILD 628

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           LS++EAG++ L +   SL   V E   +    A+ K IE+   +   L   V  D+  +R
Sbjct: 629 LSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQDLPWHVVGDQVRLR 688

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           QV+ NL+ NAVKFT   GRV V V        +       + D G GI + +   +  +F
Sbjct: 689 QVLTNLVGNAVKFTER-GRVTVQVEVADKTAEAELLLRFRVSDTGIGIPQDKRHLLFQAF 747

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            Q   +      G GLGL I++ I+   GG+    S    G      
Sbjct: 748 SQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVGSTFTFT 794


>gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1306

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 11/271 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                VK +S     D      +         ++ AE+ N AKS FLA MSHE+RTP+N 
Sbjct: 604 WIAPVVKSMSSMLYSDRQAQLNQEVNEALRRAKEDAEQANDAKSNFLAMMSHEIRTPING 663

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G SEV+    +        + Y   I  S   LL++IN++LDLS+IEAG+  +     
Sbjct: 664 IIGMSEVLSHTELAF----EQRRYNDTITTSANALLDIINDVLDLSKIEAGKMTVRHETF 719

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            + ++V     ++  R +  N+      DP L   + +D   +RQ+++NL  NA KFT  
Sbjct: 720 CIHELVENVTNIVAPRVKS-NVTFTTYTDPLLPHQITSDFSKLRQILVNLAGNAAKFTDS 778

Query: 386 GGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G V V++       +     + + D G GI + ++     +F Q   + K   QG GLG
Sbjct: 779 -GYVDVSITQVSRIENRCEIALKVTDTGIGIEKAQLDKAFENFSQIDNSSKRRYQGTGLG 837

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LPI +       G     S + +G    A  
Sbjct: 838 LPICRKFTELLNGDIKAESSIGQGSTFSARF 868


>gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 989

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +      ++ AE  N AK +FLA++SHELRTPLN ILG++++++        +
Sbjct: 516 ISARKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQR---DARLD 572

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +G I +SGQHLL LIN+ILD +R+ AG+ EL    +SL   +     ++ +RAQ
Sbjct: 573 ARQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQ 632

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +     P L   V  DE+ +RQV+LNLL+NAVKFT   G V ++V   +      
Sbjct: 633 QKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDR-GEVTLSVSRGAAGRVRF 691

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G G++   +  +   F Q          G GLGL I++ ++   GG+  + S   
Sbjct: 692 EVRDTGIGVSADRLEAIFQPFEQAGD-HTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAG 750

Query: 464 EGVEVIAIL 472
           EG      L
Sbjct: 751 EGSVFGFEL 759


>gi|262394675|ref|YP_003286529.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|262338269|gb|ACY52064.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 806

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   KI               + E   LI +  
Sbjct: 274 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSEDEIGQLIDKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDDQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E   +   +  I+     + Q    EK + 
Sbjct: 390 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLR 449

Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                  P+      D+  +RQV+ NLL+NAVKFT   G V V +      +G    +++
Sbjct: 450 FGVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELTEKSSKAGTKLILAV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG  +++S+   G
Sbjct: 509 KDTGIGISQEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVG 568

Query: 466 VEVIAIL 472
                 +
Sbjct: 569 TTFTVEI 575


>gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 739

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 17/249 (6%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+N ++G +E++    +    +E  + Y   I  SG+ LL +I
Sbjct: 213 NRAKSAFLANMSHEIRTPMNGVVGMAELLCDTAL----DEEQQLYASTIKNSGEALLVII 268

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEA +  L      L   + E  +++Q   ++K + +    D  L +++  D
Sbjct: 269 NDVLDYSKIEAEKMMLHPEPFDLERCIHEVAMLMQPIVRDKGLTLLVDYDLFLPTLFVGD 328

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPT 419
              +RQV+ NLL NAVKFT   G + + V             +++I+D G GI   ++  
Sbjct: 329 PGRVRQVLTNLLGNAVKFTTK-GHILIRVTGVPDPATGRCAIHVAIEDTGIGIPREKLAH 387

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILP---- 473
           +   F Q          G GLGL I+Q ++   GG   + S+   G        LP    
Sbjct: 388 IFGEFNQVENERNRQFDGTGLGLAISQRLIQMMGGTVWVESEEGRGSCFGFRVTLPMSEE 447

Query: 474 NTRVLNFIP 482
              VL  +P
Sbjct: 448 AQPVLPNLP 456


>gi|32400384|dbj|BAC78681.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1390

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 21/274 (7%)

Query: 223  DLIAELEVAKSLSDETRKRAEEEN---------LAKSRFLASMSHELRTPLNAILGFSEV 273
            D+    E A+ L +E+R++ +              KS+FLA+MSHE+RTP+  ++G +E+
Sbjct: 756  DVSELKEKAEGLKEESREKKQAMANEAAAKEANRLKSQFLANMSHEIRTPITGVIGMAEL 815

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +    +    +    EY+ +I RS   LL +IN+ILD S++E+GR ++ E   SL  IV 
Sbjct: 816  LRDMEL----DAEQTEYVENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVIVT 871

Query: 334  ECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +   ML   A+ KN++    I     +   V  D   +RQ+I NLL+N++KFT   G V 
Sbjct: 872  DVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNLLTNSIKFTNQ-GYVK 930

Query: 391  VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             +V               ++D+G GI E     +   F QG  +      G GLGL I +
Sbjct: 931  FSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDASTARKFGGTGLGLTICK 990

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +++    G   + S L  G      +P ++    
Sbjct: 991  NLLELMNGNMTLESTLGNGTVATFWVPFSKPQQQ 1024


>gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
 gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
          Length = 795

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 9/260 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  ++  +LE   +   E    AE+ + AKS FL+SMSH++RTP+NAI+G +E+  +  
Sbjct: 258 TELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMTEIARIHL 317

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   E     +  I  S QHLL LIN++LD+S IE+G   LS SA SL D +   + +
Sbjct: 318 DDPGRVEN---CLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFMENIVAI 374

Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394
           +Q  A EK   +F +        ++AD   ++Q+ +N+LSNAVKFT   G + +T+    
Sbjct: 375 IQPAAAEKRQHLFIRTFGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITLTLEEFP 434

Query: 395 --WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      +  D G G+ +  +  +  SF +   +     +G GLG+ I + I+   
Sbjct: 435 AAREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITKRIVDMM 494

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG+  +RS   +G   +  L
Sbjct: 495 GGRITVRSAEGKGSTFVVYL 514


>gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 418

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 156/329 (47%), Gaps = 9/329 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           + N  +   + +   P    ++ + + S     I  + +    L      +  + +   +
Sbjct: 87  IQNMGVQAPLIVLTPPENKKITQEFMESGAWDYIIESMISPDILFKTLKNSMRIHEVEKE 146

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSRFLASMSHELRTPLNA 266
           +     +  +    L+       + + +        +E +  +S+FLA++SHELRTP+NA
Sbjct: 147 LKVTNQQLRENNKILKQKNKELKQQQDQIHLKNLQLQEASRRQSQFLATISHELRTPMNA 206

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS+++  +   PL +    + I  I  + Q+LL LINE+LD S++E G+ +L+    
Sbjct: 207 IMGFSQLLLRQYPDPLTD-QQIDIIQRIFNNSQNLLTLINEVLDFSKLEIGQMDLNIGKF 265

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L  +VR  +  L      KN+ +   I  + + V  D+  ++++++NLLSNA+KFT   
Sbjct: 266 DLDILVRFTVEELSSLTLNKNLSLNVDIHLANNQVINDKNFLKRILINLLSNAIKFTPA- 324

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + V V   +     I+I+D G GIA   + T+ T F Q    +     G GLGL I  
Sbjct: 325 GEIWVKVWEMNPERIAITIEDTGVGIAPEHLKTIFTPFHQVDQTLTRQHLGTGLGLAIVY 384

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475
           S++    G+  + S+L +G      +P  
Sbjct: 385 SLVKMMQGEIHVTSQLEQGSVFRVEIPRR 413


>gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 876

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 11/263 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +DL  ++           +RA+  +  KS FLAS+SHELRTPLNAI+GFS V+  +T  P
Sbjct: 602 NDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTDQP 661

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L   T +E I  I+R+G+ LL+LINE+LDL+RIEAG   L  S ++L +I  E    +Q 
Sbjct: 662 LT-PTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITSEVCDTVQT 720

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
             + + + +   +  +L  + AD   +RQ++ NLLSNA+KFT   G + V+         
Sbjct: 721 LLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTER-GTITVSARVHDEVNE 779

Query: 398 ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               GR   +S+ D G GI       +   F Q     +S   G GLGL I + ++   G
Sbjct: 780 DGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQIHG-RRSRLSGTGLGLAITRKLVLAQG 838

Query: 454 GQFLIRSKLREGVEVIAILPNTR 476
           G+  + S    G      +P  +
Sbjct: 839 GRIWVDSTPGIGSTFTFTIPVAQ 861


>gi|288961674|ref|YP_003451984.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288913954|dbj|BAI75440.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1960

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 160/377 (42%), Gaps = 25/377 (6%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L   G ++  + +  +  T  I + ++ ++  M    +      +   L +Q   +
Sbjct: 1112 AVIELASFGRFSETHQSFLEQLTESIGIVLNTIAANMRTEGLLKQSQRLTSELQSQQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             + +      A  L  +          L  +N  +     + +    E+E         +
Sbjct: 1172 TATNERLEQQAASLRKSEELLKAQQEKLTTTNEALEEKAEQLEKQNIEVERKNREVVFAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++       L++    E+  
Sbjct: 1232 AALEEKAEQLALTSKYKSQFLANMSHELRTPLNSLLILSKLLADNPDTNLSD-RQVEFAR 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             IH +G  LL LIN+ILDLS+IE+G   L    + L D+           AQEK +    
Sbjct: 1291 TIHSAGSDLLGLINDILDLSKIESGTVTLEIGEVVLGDLRNHVERTFSQVAQEKKLAFTI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----------- 400
            ++D +L + +  DEK + QV+ NLLSNA KFT  GG +   V   +G             
Sbjct: 1351 EMDAALPAGIQTDEKRLSQVLNNLLSNAFKFTETGG-ITFRVAPATGGWSAAHPTLDAAA 1409

Query: 401  --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++ D G GI E +   +  +F Q          G GLGL I++ I    GG+  +
Sbjct: 1410 SVLAFTVIDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGEIRV 1469

Query: 459  RSKLREGVEVIAILPNT 475
             S   +G      +P +
Sbjct: 1470 ASTPGKGSVFTLFVPRS 1486


>gi|313632600|gb|EFR99590.1| sensor histidine kinase ResE [Listeria seeligeri FSL N1-067]
          Length = 596

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++ + +    + A+E  +E+  +++        D   + QV++NL+ NA++ T     
Sbjct: 444 APLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRLEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 KGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  H G+  ++S+L +G + I  LP  +
Sbjct: 564 IVKNIVEAHDGKISVKSELGKGSDFIITLPLEK 596


>gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
 gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
          Length = 1012

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           +       ++ AE+ N AKS FL+ +SHELRTPLN+ILG+++++  E       E     
Sbjct: 628 SNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQIL-EEQGEKDLTEKQLNR 686

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++G HLL LINE LDLS+IE+G   ++   +S+ + + + + +++  A++K+  +
Sbjct: 687 IRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSIL 746

Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           + +        V  DE   +Q++LNLL+NA+K++     + +    T      I I+D G
Sbjct: 747 YTRFHAYQEVFVEVDELRFQQILLNLLTNAIKYSPAYRDITIYTEITQ-HHVTILIEDRG 805

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   E+  +   F + +   K    G G+GL + + ++    G   +RS+  +G    
Sbjct: 806 FGIPASELNRIFEPFYRINRLEKD---GTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFW 862

Query: 470 AILPNTRVLNFIPE 483
              P   V   +P+
Sbjct: 863 VRFPL--VHPPVPK 874


>gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 778

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 145/264 (54%), Gaps = 12/264 (4%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           ++         I   ++ ++   + ++ AE+  LAKS FL++MSHE+RTPLN ++GF+++
Sbjct: 104 LIELVEFLKRQIERRKMIENELRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDL 163

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +         +ET   Y+  +++S   LL++IN+ILD S+IEAG+ EL      L+ I R
Sbjct: 164 LLKTK----TDETQHHYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGR 219

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   M++L A +K +E+   IDPS++  VWAD+  +RQ+++NLLSNAVKFT   G + + 
Sbjct: 220 QVADMIKLPAHQKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQ-GEIELR 278

Query: 393 VGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +     +          +++D G GIAE     +  +F Q   +      G GLGL I+ 
Sbjct: 279 IERIHDQPADGLTSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISN 338

Query: 447 SIMANHGGQFLIRSKLREGVEVIA 470
            ++   G +  + S+L +G     
Sbjct: 339 KLLGLMGSRLQLTSELGKGSTFFF 362


>gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 650

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 5/249 (2%)

Query: 242 AEE-ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           AE      +  F A++SHEL+TPL  I GF+E+I        + E  K +   IH+  + 
Sbjct: 339 AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDIKNFSNKIHQESRR 396

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +L+LI+ I+ LS+IE     +S   +S+  +++    ++  +A +K+++I   I+P    
Sbjct: 397 MLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEP--VY 454

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ +   + ++ +NLL NAVK+   GG + V +     +   I+I D G GI E +   V
Sbjct: 455 MYGNAALLSELFMNLLDNAVKYNVKGGNITVHIKRLKEKLMKITISDTGVGIPEEKQNRV 514

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +   A  G GLGL I + I+  H G+  I S   +G  VI  LP       
Sbjct: 515 FERFFRAEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVIVELPCLSDEEI 574

Query: 481 IPEDNHEST 489
           + E+  E T
Sbjct: 575 LRENATEIT 583


>gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 807

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+Y+  +  + + LL LI++ILDLS++E+G +E  +S   +  +  E I  L+++  
Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       VWAD+  + QVI N ++NA+KFT   G + +     +       
Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +I TV   F +      S   G GLGL I +S++   GG   + S+  E
Sbjct: 732 VRDIGMGIPRNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 788 GSCFWFTYP 796


>gi|171060373|ref|YP_001792722.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777818|gb|ACB35957.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1021

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 154/451 (34%), Gaps = 21/451 (4%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
            +  L                     +     + P           V AA+      +  
Sbjct: 68  RLAALSRGVRQNAIVTAVQVRSDNGALLVSDGELPDAAALPAGPGGVSAAHAWQTVPLAR 127

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           +             +    +  G       ++   T     + +  S  +   L +    
Sbjct: 128 AVSTRPA-----RLIGHLHLYSGPQ-----VLWDRTKYGLLVVLLNSIVVTTGLWLMFSW 177

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                 +  ++     VA           ++           +    +     + +  + 
Sbjct: 178 TVRHRLSKEVTRMARTVAGWRYRKDETTPVEAIAYPYPDELGALVDALNDSQARLHDSMR 237

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              A   +L   +             AE  + AK  FLA+MSHE+RTP+NAILG   +  
Sbjct: 238 RLDALNQNLEHSVAERTVELQRATDVAEAASRAKGEFLANMSHEIRTPINAILGMLYLAL 297

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P    + + Y+G    +   LL +IN+ILDLS+IEAG+ ++      L  ++   
Sbjct: 298 KSDLAP----SVRNYLGKAQNAAHALLGVINDILDLSKIEAGKLDIERVEFRLDGVLEML 353

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
              +  +A  K IE   + DP++   +  D   + QV+LNL  NAVKFT   G V +   
Sbjct: 354 TDAVGHQAAHKGIEFLIRYDPAIPPALIGDPLRLGQVLLNLCGNAVKFT-EHGEVELAFR 412

Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
               R       ++++D G GIA      +   F Q   +      G GLGL I++ ++ 
Sbjct: 413 ALPSRPGEITVQVNVRDTGIGIAPEVQHRLFEKFSQADQSTTRRFGGTGLGLAISKQLVE 472

Query: 451 NHGGQFLIRSK-LREGVEVIAILPNTRVLNF 480
             GG+  I       G  +   LP       
Sbjct: 473 LMGGRIWIEDTLPGRGTTMCFTLPLRIAAES 503


>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
 gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
          Length = 1188

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++   + + + E ++    L       D  R RAEE   AKSRFLA MSHELRTP+  +L
Sbjct: 632 RTENDLRAARDELEEQAQSLRDLAEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLL 691

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  E+     +    ++  + Y+  +  S + LL L+N+ILD S++EAG+ +L E   + 
Sbjct: 692 GMIELASRTEL----SKEQQGYVRIMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAP 747

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             I+ +   + Q +A  K + +   + PS+   V  D   ++Q++ NL+SNA+KFT   G
Sbjct: 748 EQIIGDVFGLFQAQASAKGLVLEADLRPSVPAWVRGDPLRVKQILSNLISNAIKFTTK-G 806

Query: 388 RVHVTVGWTSG--RGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           R+ V +G T G      +   + D G GIA G +  +  +F QG  +      G GLGL 
Sbjct: 807 RITVRLGATEGPSGLVRLQGEVIDTGQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLA 866

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470
           I++ +    GG   + S+L  G     
Sbjct: 867 ISRRLAEGMGGSITVESELGRGSVFRF 893


>gi|156036016|ref|XP_001586119.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980]
 gi|154698102|gb|EDN97840.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1309

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 694 ELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V   
Sbjct: 754 DTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNA 809

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +T+ 
Sbjct: 810 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868

Query: 395 WTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                            + D G GI   ++  +  +F Q   ++     G GLGL I++ 
Sbjct: 869 KAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKR 928

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++    G   ++S+  +G      
Sbjct: 929 LVNLMRGDVWVKSQYGKGSSFYFT 952


>gi|254229957|ref|ZP_04923359.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151937526|gb|EDN56382.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 811

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   KI               + E   LI +  
Sbjct: 279 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSEDEIGQLIDKFN 338

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 339 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDDQRK 394

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E   +   +  I+     + Q    EK + 
Sbjct: 395 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLR 454

Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                  P+      D+  +RQV+ NLL+NAVKFT   G V V +      +G    +++
Sbjct: 455 FGVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELTEKSSKAGTKLILAV 513

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG  +++S+   G
Sbjct: 514 KDTGIGISQEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVG 573

Query: 466 VEVIAIL 472
                 +
Sbjct: 574 TTFTVEI 580


>gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 575

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   +  T  +++  I    + L+ L
Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAT--KFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + E  + + ++V E I +L+++A++KNI++  K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVKVQEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV   S     I +KD G GI E EI  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSDSTVTIKVKDTGIGIPEKEIERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  + S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573


>gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 683

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 6/257 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E+    A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++ +  
Sbjct: 274 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 333

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +   +K  I  I RS +  ++LI+++LD+S I +G+  L    + L D++      
Sbjct: 334 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARET 390

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++  A++KNI I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + ++V  +  
Sbjct: 391 IEPMARQKNITIDTEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPE 449

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI    +P +   F Q  ++      G+GLGL IA+ ++  H G+   
Sbjct: 450 GVVA-TVRDTGIGIEPAFLPHIFDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRITA 508

Query: 459 RSK-LREGVEVIAILPN 474
            S     G  +   LP 
Sbjct: 509 ASSGADRGTTMAVSLPL 525


>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1205

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NAI+G S +     +    ++  + YI  +  S   LL LI
Sbjct: 478 NKAKSDFLANMSHEIRTPMNAIIGMSYLALKTDL----SKAQRNYIQKVKLSADSLLGLI 533

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+ ++      L +++     ++ LRA E+ +E+   ID  + + +  D
Sbjct: 534 NDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGD 593

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              + Q+++NL +NAVKFT   G + V++      G       S+ D+G G+   +   +
Sbjct: 594 PLRLGQILINLANNAVKFTEQ-GEIKVSIALEKKDGNDITLKFSVTDSGIGMTPEQCNKL 652

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q   +      G GLGL I++ +    GG   + S+  +G      
Sbjct: 653 FNKFTQADSSTTRKYGGTGLGLAISKELCQLMGGDIGVTSEQGKGSTFSFT 703


>gi|90579036|ref|ZP_01234846.1| Hypothetical sensor protein TorS [Vibrio angustum S14]
 gi|90439869|gb|EAS65050.1| Hypothetical sensor protein TorS [Vibrio angustum S14]
          Length = 971

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 20/298 (6%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIA----ELEVAKSLSDE-------TRKRAEEENLAKS 250
            +     K+  ++   +A  + L+A    ELE      +E        R  AE+ N AKS
Sbjct: 412 RLAQAESKARQELQEHKASLERLVAKRTGELEKINRRLNEEVHNHYKARDEAEKANRAKS 471

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+N +LG + ++    +        K Y+  I+RSG+ LL+++N+ILD
Sbjct: 472 SFLATMSHEIRTPMNGVLGTASLLADTQLTS----QQKRYLDVINRSGETLLDILNDILD 527

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
            S+IEAG  ++  S  S++ +V +   ML+ RA  K I +   I P +  +W  DE  +R
Sbjct: 528 YSKIEAGHLDIRPSNFSVVRMVTDVSSMLEGRALAKRIGLECHISPQVEGMWFGDESRIR 587

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           QV++NL+ NA+KFT   G+V + V            S+KD G GI + E   + ++F Q 
Sbjct: 588 QVLVNLVGNAIKFTDT-GKVSIFVEPHPDMPDELLFSVKDTGIGIDQEEQNILFSAFQQA 646

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
               KS  +G GLGL I++ I+A   G+  + S + EG      LP       +  D+
Sbjct: 647 EAGRKS-IEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLEHGEGSLEPDD 703


>gi|94313777|ref|YP_586986.1| putative two-component hybrid histidine kinase, periplasmic sensor
           [Cupriavidus metallidurans CH34]
 gi|93357629|gb|ABF11717.1| putative two-component hybrid histidine kinase, periplasmic sensor
           [Cupriavidus metallidurans CH34]
          Length = 591

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 174/460 (37%), Gaps = 15/460 (3%)

Query: 26  EYPSKMDFDR-EIITLHVESLFRVSPILPLF----VLLVANIGTWFTQNPIFPMWSLITL 80
                  +D   ++   +E + +   I  L      +++A   T    +P    W+   +
Sbjct: 2   WSSVLPHYDEPRLLAAQMELIDQSFGIAMLGCSLAAIILAVGLTVTGGHPGAMPWAAAMV 61

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            + A     G+  +   +       +   + V  + IG  W L+  +     +P  +   
Sbjct: 62  VLCAIAHF-GRLAVPDRLTEARAGRYARAMTVMLVLIGSLWGLVAWLYLDIRSPAVVICV 120

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
            S    ++ +  A+ +  LP      F P ++ +    +++  +  + +       L   
Sbjct: 121 LSLIAGMSAAALAIFSACLP-VAIGFFIPAILPVWIVFLLTHDIAYLPMFFGTPLYLVVL 179

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                +  +     ++ + E  +LI++L    + + +  + AE  N AKS FLAS SH+L
Sbjct: 180 LIFARNYSRVACHSIALRFENVELISQLRDQTARAGQALREAENANRAKSVFLASASHDL 239

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           R PL+A+  F   +    +        ++ +  I  S      ++N +LD S++EAG   
Sbjct: 240 RQPLHALGLFLVSLGRTPLDAH----QRQLLDHIEASSGAAREMLNTLLDFSKLEAGVIT 295

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
                  L  ++ +       +A  +   +  +   + ++++ D   +  ++ NL++NA+
Sbjct: 296 ARPRPFRLQPMLHKLENEFAPQANARG--LVYRTRDTTATLFGDPALVELILRNLIANAI 353

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++T  GG V +           I + D G GI   +   +   F Q     +   +G+GL
Sbjct: 354 RYTHTGG-VLIACRPRRFH-ASIEVWDTGIGIPIAQHREIFREFHQLGNPERDQRKGLGL 411

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GL I   +      +  + S    G      LP       
Sbjct: 412 GLAIVDGLARTMQTRVTLDSIPERGSVFRLQLPLAWAAPE 451


>gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1313

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 7/238 (2%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + R++  + AKS FL+ MSHE+RTP+NAI+G + +   E     +    KEY+  I  S 
Sbjct: 930  KSRSDSASKAKSDFLSRMSHEIRTPMNAIIGMTNIAMEENGLKNST---KEYLEKISTSS 986

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            ++LL++IN+ILD+SRIE+G+ +LS S  SL +++ E   +++ +A++K +    K + + 
Sbjct: 987  EYLLSIINDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVND 1046

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAE 414
              ++ D   + Q+++NLL NA+KFT   G + + V               +KD+G GI+ 
Sbjct: 1047 DVLYGDYMRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISS 1106

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                 V  +F Q          G GLGL I  +++   G    + S L +G      L
Sbjct: 1107 ENKERVFHAFEQAEDDTSIHYGGTGLGLAICNNLVKLMGSNIELESDLGKGSTFKFTL 1164


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F++S+SHELRTPL +I G++E +    M   + E    ++  IH+  + 
Sbjct: 165 RLRNLERTRRDFVSSVSHELRTPLASIKGYTETLLEGAM--NDPENATAFLNIIHQEAEQ 222

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N++LDLSRIE+G+   S   + +   + +   + +  A  K + I       L +
Sbjct: 223 LTALVNDVLDLSRIESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRIELNAPEGLPA 282

Query: 361 VWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V AD      V+ NL+ NA+K+     GRV V+   T G    I + DNG GI + ++  
Sbjct: 283 VLADRSYFDIVVRNLIDNAIKYVDAESGRVRVSAYAT-GDSVSIEVADNGIGIPQADLDR 341

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + I+  H G+  +RS++  G      LP  
Sbjct: 342 IFERFYRVDKARSRELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTVTLPVA 397


>gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
          Length = 612

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +SI D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           sp. 7L76]
 gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645]
          Length = 609

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV  N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVFDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1824

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/402 (26%), Positives = 171/402 (42%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +    ++L  + +++ + F      FL+
Sbjct: 1209 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGSVLGVIELASFTPFTQIQRDFLN 1268

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
                ++A S   I      ++ LA                    K+     +   EK +L
Sbjct: 1269 QIAEMIATSVNTISVNTKTELLLAQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1328

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A+     EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1329 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1388

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1389 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1447

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G   + +
Sbjct: 1448 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1507

Query: 392  TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                           S+ D G GIA  ++  +  +F Q      
Sbjct: 1508 RPARDDVPQKIREQLLETGSLTDPDAGLIAFSVTDTGIGIASSKMRVIFEAFKQADGTTS 1567

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1568 RKYGGTGLGLSISREIAQLLGGEIYAQSETGRGSTFTLYLPL 1609


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                    +S     +++AE    AK  FLA MSHE+RTPL A+LG +++++   +   
Sbjct: 189 RDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSH 248

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+     +G++LL+LIN ILDLS+IEAGR E+      L  +VR+   ++ LR
Sbjct: 249 ----QRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLR 304

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A+++ +E       +    V  D   +RQV++NL+ NA+KFT   GRV V +        
Sbjct: 305 ARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPP 363

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G     ++ D G GI   +   +   F Q   ++     G GLGL I++ ++   GGQ
Sbjct: 364 YPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQ 423

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             + S+   G      +P  +  N I + +  ++
Sbjct: 424 ISLVSREGGGSTFTMEIPLLKCENSITKPSRAAS 457


>gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 845

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+  ++++SHELRTPL++I GF+E++    +  +     ++Y+  IH   + L N
Sbjct: 614 EADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAI---KQQKYLSTIHNETERLSN 670

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ + LD+ R+++G      + + L  IV + I + +      +I++   +     ++  
Sbjct: 671 LVTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHL-LSVERPAIIG 729

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  ++Q++ NL++NA+K++  GG+V +TV  T      I I D+G GI +     +   
Sbjct: 730 DETRIKQLLNNLVNNAIKYSPDGGQVDITVS-TDQENATIQITDHGIGIPQYAFAHLFDK 788

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +      G GLGL I + I+  H G   + S + +G      LP 
Sbjct: 789 FYRVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALPL 839


>gi|260901217|ref|ZP_05909612.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308106702|gb|EFO44242.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 806

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229
             ++   L  +L        YI   + +   KI   +             E   LI +  
Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E S S   +  I+     +      EK ++
Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449

Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                   +   +  D+  +RQV+ NLL+NAVKFT   G V VT+            I+I
Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568

Query: 466 VEVIA 470
                
Sbjct: 569 TTFTV 573


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 7/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK+ E     K  F++ +SHELRTPL +I G   ++    + P ++E  K  +     S
Sbjct: 710 ERKQIE---RMKDEFVSVVSHELRTPLTSIYGSLGMLASGLL-PTDSEQGKRLLQIAADS 765

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ LIN+ILD+ RIE+G+ ++     +++D++ + + ++Q  A +  + +       
Sbjct: 766 TERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVTLSISALSG 825

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD   + Q + NLLSNA+KF++ G  V +      G    ++IKD G GI   ++
Sbjct: 826 --QVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGA-QQEGDEVLLTIKDTGRGIPTDKL 882

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++   F Q   +      G GLGL I +SIM  HGG+    S L EG      LP 
Sbjct: 883 ESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESILGEGSTFYVTLPL 939


>gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 880

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 28/288 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +    + +  AE  N AKS FLASMSHE+RTP+N ++G +E+     +   
Sbjct: 470 HDITERKRLEEDLFQAKAEAEAANRAKSEFLASMSHEIRTPMNGVIGLTEL----ALMQE 525

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+G + +S   LL++IN+ILDLS+IEAGR EL  +   L D++      ++L 
Sbjct: 526 PKGKVRDYLGLVKQSANSLLDIINDILDLSKIEAGRVELENADFDLRDMLDSLFETMRLT 585

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A+ K +     IDP +   +  DE  +RQ+ +NL+ NAVK+T   G+V V VG  +    
Sbjct: 586 AERKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNLIGNAVKYTET-GQVSVHVGLENAHDS 644

Query: 401 -------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          +S+KD G GI + ++  +   F  G  A  +   G GLGL I   
Sbjct: 645 PVAGDSDKPEHICLLVSVKDTGIGIPKNKLEKIFDPFDTG--ARGAKHDGTGLGLTITNR 702

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           ++   GG+ ++RS+  +G                P  +  +TQ    A
Sbjct: 703 LVELMGGRIIVRSEPGQGSTFTFS------AALEPASDTATTQESLQA 744


>gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
 gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
          Length = 946

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 17/351 (4%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
               +       Y  I+        + + ++   +L         P +V      I    
Sbjct: 561 FIANQVSGILGRYFIIFSILIFCTGIILYSIYINILK-------IPHIVPNQLYIIFWKT 613

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRA 242
                L     T +++F  ++   +++       Q       I   +       + ++RA
Sbjct: 614 FF---LLSAPLTVIAWFLVLSQRSYRAAEDENRFQTRLLMREIHAHKRTDQELKKAKERA 670

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  NL+KSRF+  +SHE+RTPLN+I+G++ ++E + + P   E   E +  I RS +HL 
Sbjct: 671 ESANLSKSRFMVGVSHEIRTPLNSIMGYAYLLENKMLTP---EKQNEGLKVIQRSTEHLS 727

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            LI  + D+S+IEAGR E+    I+  + ++    ML+ +  +K +   + I   L   V
Sbjct: 728 GLIEGLFDISKIEAGRMEILREKINFREFLKHLTEMLRFQVNQKKLLFIEHIPDDLPEYV 787

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D++ +RQ+++NLLSNA+KFT   G V  +V W         I+D G GI   +I  + 
Sbjct: 788 MTDQRRLRQILINLLSNAIKFTPS-GSVSFSVRWNME-IAIFEIQDTGIGIPATDIERIH 845

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F + S     + QG GLGL I + ++   GG+  I+S++  G      L
Sbjct: 846 EPFQRSSHPASQSIQGTGLGLTITRLLVQILGGELTIKSQVGLGTTCRVRL 896


>gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
 gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
          Length = 991

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 10/265 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L     + +L   L  A+  S+  R+ AE  N AKS F+A+MSHE+RTPLN +LG  E+
Sbjct: 507 ALRDVTAQVELEDNLRRAREDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLEL 566

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    + P      +E +  I  S   L+ +I+++LD S+IEAG+ ++     +L  ++ 
Sbjct: 567 LARSPLQPG----QRERLDRIRFSADALMRIISDVLDFSKIEAGQLDVEPVPFALRPLIE 622

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
              ++    A  K + ++  +D +       D   +RQ++ NL+ NAVKFT   GR+ + 
Sbjct: 623 GVALLFAPDALRKGVRLYFTVDAAADQRCVGDAHRIRQILTNLVGNAVKFT-ESGRILLR 681

Query: 393 VGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                    G    + + D+G G++  +   +   F Q   ++     G GLGL +   I
Sbjct: 682 AELHRAAGQGAQLRVQVIDSGIGMSPEQTAQLFQPFQQADASVSRRYGGSGLGLALCLQI 741

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
               GGQ  + S    G     +LP
Sbjct: 742 AQAMGGQVSVESTEGVGSSFTLLLP 766


>gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 893

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAK-SLSDETR--KRAEEENLAKSRFLASMSHE 259
           +     +     +      + L A+ E A  + S+  +  K  E+ +  KS+FLA+MSHE
Sbjct: 448 LQAQTEELQTHSVEMHLLNERLGAQKEAALIAASELEKYAKELEKSSKYKSQFLANMSHE 507

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S+++     G L  E    Y   IH SG  LLNLIN+ILDLS++EAG+ 
Sbjct: 508 LRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHNSGSELLNLINDILDLSKVEAGKM 566

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           ++    ++L ++           A+ KN+E   ++   L   +++D   + Q++ NLLSN
Sbjct: 567 QIEMDLVNLTELPELMEGYFSKSAESKNLEFDIEVADDLPDMMYSDGMRLHQILRNLLSN 626

Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           A+KFT   G V + V             SG     S++D G GIA   +  +  +F QG 
Sbjct: 627 AIKFT-ESGSVKLKVKKMNSIVTSDFIISGDVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                   G GLGL I+  +    GG   + S+   G   I  LP 
Sbjct: 686 ETTARRFGGTGLGLSISLHLAKLLGGYITVESEEGIGSTFILYLPL 731


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 8/251 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  R+RAE     + AK+ F +++SHE RTPL  +LG  E +  +  G L+ +  +E + 
Sbjct: 332 EAERQRAEALAEIDRAKTTFFSNVSHEFRTPLTLLLGPVEDLLNQAAGKLDADEQEE-LK 390

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IHR+G  LL L+N +LD SRIEAGR + +   I L     E   + +   ++  ++   
Sbjct: 391 TIHRNGLRLLKLVNSLLDFSRIEAGRIQAAYQEIDLAGYTAELASVFRSAIEKAGLKFTV 450

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
              P    ++ D     +++LNL+SNA KFT   G + V +    G+   ++++D G GI
Sbjct: 451 DCPPLAEPIFVDRDMWEKIVLNLISNAFKFTLQ-GEIEVRLRQV-GKNAELTVRDTGAGI 508

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  V   F +         +G G+GL +   ++  HGG+  + S+L +G      L
Sbjct: 509 PAEQVNRVFERFHRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFTVSL 568

Query: 473 PNTRVLNFIPE 483
           P  +  + +P+
Sbjct: 569 PFGQ--DHLPQ 577



 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 17/251 (6%)

Query: 229  EVAKSLSDETRKRAEEENLAKS------RFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            E  +      R   E     +        F  S+SH+LR PL ++ GF+EV++ +    +
Sbjct: 894  ERKQIEEKLERLVVERTAKLRDTIGELEAFSYSISHDLRAPLRSMQGFAEVLKEDCRDQI 953

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              E    Y+  I  S + +  LI ++L  S++   R EL    I+   +++  +      
Sbjct: 954  GPEGQL-YLNKISDSARRMDRLIQDVLTFSKM--ARTELILEPINTEKLLQTILDSY-PS 1009

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQ 401
             Q    +I  K    L  V  +E  + Q I NL+ NA+KF   G    ++V         
Sbjct: 1010 FQPPFSQIAIK--ARLPLVLGNEAALTQCISNLIGNAIKFVQPGTVPQISVWAEEQDGYV 1067

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             +  KDNG GI +     +   F +    I +  +G G+GL I +  +   GG+  + S+
Sbjct: 1068 RLFFKDNGIGIPKISQERIFGIFQR----ISTGYEGTGIGLAIVKKAVERMGGKVGLYSE 1123

Query: 462  LREGVEVIAIL 472
               G      L
Sbjct: 1124 EGRGSTFWLEL 1134


>gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 601

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  + +  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++E       + 
Sbjct: 362 ITQLKETEQMLIKAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSMLEE----AEDQ 417

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +YI  I  + + LL LI++ILDLS+IEAG +++    ++   +  +    +Q++  
Sbjct: 418 EEKHQYITIIEDNNKLLLQLISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMK-T 476

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  K +    +  +D+  + QV+LN ++NA+KFT+  G + +      G     S
Sbjct: 477 SPQVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQI-DGNEVKFS 534

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F +      S   G GLGLPI QSI+   GG+  + S+   
Sbjct: 535 VQDTGMGIEPEKQEAIFTRFVKL----NSFIPGTGLGLPICQSIVTQLGGKIGVESEPGR 590

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 591 GACFWFTHP 599


>gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1419

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 14/271 (5%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +  +S     R+RAE+ + AKS FLA+MSHE+RTP+NAI+G ++++    + P   
Sbjct: 1019 ITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLADTPLTP--- 1075

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               K Y+     SGQ L+ +IN+ILDLS++EAG+  L      L + + +   +   +A+
Sbjct: 1076 -RQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTCAVFTPQAE 1134

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
            EK + +F  +DP L   V+ D   + Q++ NLL+NA KFT   G + ++   T    S  
Sbjct: 1135 EKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHE-GEIRLSASATLLGPSAF 1193

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ +D G GIA  +I  V  +F Q     +    G GLGL I++ +     G+  I+
Sbjct: 1194 LLRLTCRDTGVGIAPDDIARVCDNFFQVGGNQRR---GTGLGLAISKRLTELMQGELSIQ 1250

Query: 460  SKLREGVEVIAILPNTRVLNFIP-EDNHEST 489
            S L +G  + A +           E   ES+
Sbjct: 1251 SILGQGATITATVRLEIAAESASGEQTPESS 1281


>gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 23/269 (8%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + ++ AE  N AKS FLASMSHE+RTP+N I+G +E+     +        ++Y+G +
Sbjct: 556 LAQAKQEAERANRAKSEFLASMSHEIRTPMNGIIGLTEL----ALMQRPKAKVRDYLGMV 611

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +S   LL +IN+ILDLS+IEAGR EL +S  S  +++      +++ A+ K I    KI
Sbjct: 612 KQSADSLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKI 671

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYI--SI 405
           DP + + ++ DE  +RQ+ +NL+SNA+KFT   G V V V               I  SI
Sbjct: 672 DPRVPASLFGDEGRLRQIFVNLISNALKFTEA-GSVSVQVTAEDHMDLAKPGPVEIIASI 730

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI    + ++   F  G     +   G GLGL I + ++   GG+  ++S+  +G
Sbjct: 731 RDTGIGIPANRLESIFEPFDTG--TRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKG 788

Query: 466 VEVIAI------LPNTRV-LNFIPEDNHE 487
                       +P  +  +   P    E
Sbjct: 789 STFSFSVMLELAIPEEKPEMAAQPAAEPE 817


>gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1307

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 158/258 (61%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + + A+    + R  AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP+
Sbjct: 1050 RDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPV 1109

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++  A+SL D + E + M+Q +
Sbjct: 1110 ANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQ 1169

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I       L  V AD + +RQ+ LN+LSNA+++T  GG+V V+  + +     
Sbjct: 1170 ANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVV 1229

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + ++D G G+++ EI   L  F Q +   +    G GLGLP+ ++++  +  +F I S  
Sbjct: 1230 MRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRARFTINSTP 1289

Query: 463  REGVEVIAILPNTRVLNF 480
             EG  V    P+TRVL  
Sbjct: 1290 GEGTLVEVAFPSTRVLAE 1307


>gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
          Length = 576

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 24/276 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   A+ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D G GIA+ ++  +  +F Q   ++    +G G
Sbjct: 469 ILDGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL + + +   HGG   + S    G   +  LP  
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 459

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 147/352 (41%), Gaps = 7/352 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            +         T  +  +  ++  +      +     L   + + F  + +  S   +++
Sbjct: 113 GIAEFPSELFITGFFDNVLSNSIGIPIQVEGSPHALFLRPDITVQFGEMRIFFSIIMVIA 172

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           + +  + +  +    +     +T             +          ++A   S   +  
Sbjct: 173 ILLSILLVGIITRYIVKPIVKLTEATQSVAQGQYDIKLNVTRRDELGQLADHFSQMAKGL 232

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A +    +  F++++SHE+++PL +I GFS+ ++ + +   + E  + Y+  I    + +
Sbjct: 233 A-QLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---SEEQQQHYLSIIEAESRRM 288

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L  ++L L+ ++     L +S   + + +++ +         ++ ++   +    + V
Sbjct: 289 SQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVL--FHTEWNWRSKDLTIDMSLPPTYV 346

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + D++ + QV  NL++N++KFTA  G + + V         I I D G GI +  +P + 
Sbjct: 347 YGDQQLLHQVWTNLITNSIKFTAPEGAISLRV-IEHNTQCRIEISDTGIGIPQEHLPHIF 405

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A   +E   GLGL I Q I+  HGG+  + S+  +G     ILP
Sbjct: 406 NRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457


>gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 896

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +  L AE +         R  AE+ N  K  F+A +SH+LR+PLNAILG+++++    + 
Sbjct: 647 RKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKLLRTRQLP 706

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   +T    +  I R+ Q    L+ ++L++SRI  G+ +L    ++L++IV+  +    
Sbjct: 707 P---DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVNLVNIVKASVETAY 763

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A  K I +   ID S+  +  D   + QV+ NLLSNA+KFT  GGRV V +  +    
Sbjct: 764 PSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQLAKSDDSE 823

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D G GI    +P V   + Q      +   G+GLGL IA+ ++  HGG     S
Sbjct: 824 ILIQVSDTGLGIKPEFLPHVFDRYRQAHC--TAKHSGLGLGLAIARHLVELHGGTIQAHS 881

Query: 461 K-LREGVEVIAILP 473
           +    G      LP
Sbjct: 882 QGEGLGATFSIKLP 895


>gi|114328501|ref|YP_745658.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
 gi|114316675|gb|ABI62735.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
          Length = 1168

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 11/345 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + A+        +   +   V  L+    +       +   ML  +      +   L   
Sbjct: 592 VFAMLGGSTGLMLLGIYHQTVSGLTRTDPLLRSAFWQAWCVMLLISGIAAWLLVLALQSR 651

Query: 211 NVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           +V     + +   L+ E        +   + ++ AE  NLAKSRF+   SHELR+PLNAI
Sbjct: 652 HVAREESRRQTALLMNEIRAHRRTDAKLQKAKEAAESANLAKSRFVVGASHELRSPLNAI 711

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG+++++            ++  IG + RSG+HL  LI  +LD+S+IEAGR +++  A+ 
Sbjct: 712 LGYAQLM---DGDETLPPRWQRAIGIMRRSGEHLAGLIEGLLDISKIEAGRIDVARDAVR 768

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L D + + + M +++A+ K I+       +L   V+ DE+ +RQ+++NLLSNA+KFT   
Sbjct: 769 LGDFLDQIVSMFRIQAEAKGIDFIFDRPETLPDQVYTDERRLRQILINLLSNAIKFT-RY 827

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           GRV   V W   +   + I D G GI E E+  +   F + S A+ ++  G+GLGL I +
Sbjct: 828 GRVTFRVRWR-SQIADLDITDTGIGIDEQELERIFEPFHRTSGALHASMPGIGLGLTITK 886

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF--IPEDNHEST 489
            ++   GG   ++SKL EG      L  + V      P +  + T
Sbjct: 887 LLVQILGGDITVQSKLGEGSTFHIRLMLSEVQQSTEAPAETLQPT 931


>gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 391

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 130/254 (51%), Gaps = 14/254 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +L+ A+      +++AE  +L+KS FLA+MSHE+RTPLNAI GF+E++        
Sbjct: 141 HDITQLKQAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITGFAEILAS----AN 196

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y   I  +   LL L+N+ILD+S+IEAG  E   + + +  ++ +   + Q++
Sbjct: 197 TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMK 256

Query: 343 AQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
             +    I    +PSL   S+  D   + QV+ N  +NA+KFT  G    +++G+ +   
Sbjct: 257 VNDAGGNIQIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEARDT 313

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y  + D G GI   ++P V   F +        ++G GLGL I+++I+    GQ    
Sbjct: 314 ELYFYVTDTGAGIPADKLPEVFGRFVKL----NKDKKGTGLGLSISKTIVNKLEGQIGAD 369

Query: 460 SKLREGVEVIAILP 473
           S   +G      +P
Sbjct: 370 SVEGKGSTFWFTIP 383


>gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 551

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 136/261 (52%), Gaps = 9/261 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----E 275
           + + +  +    K L D+ R    E N  ++ F A++SHEL+TPLN IL   +++     
Sbjct: 261 QIEKIKQKSNENKKLLDKER----EFNKIRTEFFANLSHELKTPLNVILSSQQLLALYLR 316

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                 ++ E  ++++  + ++   LL LI+ ++D++RI++G + L+    +++ I+ + 
Sbjct: 317 NGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENHNIVTIIEDI 376

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            + +    + K+I++    D        DE  + ++ILNLLSNAVKFT  GG++ V +  
Sbjct: 377 TLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGKIKVNI-H 435

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    I+++DNG GI + +I  +   F Q   +     +G G+GL + ++++  H G 
Sbjct: 436 DDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKALIEMHNGT 495

Query: 456 FLIRSKLREGVEVIAILPNTR 476
             + S+  +G E I   P  +
Sbjct: 496 ISVESEYGKGSEFIIYFPINK 516


>gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1032

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 139/260 (53%), Gaps = 10/260 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + RA+  + AK+ FL+ MSHE+RTP+NAI+G + +         N E   + +  +  S 
Sbjct: 642 KARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS---AAGNKEQVLKCLEKLDNSS 698

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           ++LL+L+N+ILD+SRIE+G+ EL+ + + L   +     M++++A+ K +    + D   
Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQAEAKGLSFTIQNDCRT 758

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
              + AD+  + QV+LNL+ NA+KFT +GG + + +              S+ D G GI+
Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471
              +P++  +F QG+  I S   G GLGL I+  ++   GG   ++S+   G E      
Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878

Query: 472 LPNTRVLNFIPEDNHESTQY 491
           LP + V     E  +ES  Y
Sbjct: 879 LPYSEVPAPQHEILNESPSY 898


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 13/349 (3%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
              +   E + +  +A  +I L+ SA   F L  A+F S    ++  S    +   V   
Sbjct: 252 AVFSGIREAIVVTDAACDIILLNPSASRMFRLSGAMFQSRPLTMLGDSGLCALIEGVHRS 311

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
             A +              +  S++ ++        +    ++          R      
Sbjct: 312 RTAVLKEELAVMTVKGVRTMQVSSMPVVRDGEFDGSVFVLNDIT---------RLRNLER 362

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F++S+SHELRTPL +I G++E +    M   + E  + ++  I +  + L  L+N+
Sbjct: 363 IRRDFVSSVSHELRTPLTSIRGYAETLLDGAM--NDPEHAQAFLRIILQESEQLTALVND 420

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LDLS+IE+GR E +   + L  +V   + ML+   ++K ++    I P L  V ADE  
Sbjct: 421 VLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQADEAY 480

Query: 368 MRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +  VI NLL NAVK+   G G+V      T G      ++DNG GIA  ++  +   F +
Sbjct: 481 LGIVIRNLLDNAVKYVDAGTGKVRFRAFRT-GDSVQFDVEDNGSGIAHQDLERIFERFYR 539

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + I+ +H G   +RS+L  G      LP  
Sbjct: 540 VDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLPMA 588


>gi|85076393|ref|XP_955920.1| hypothetical protein NCU01823 [Neurospora crassa OR74A]
 gi|28916951|gb|EAA26684.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 2476

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFL 253
            AL+            ++  L  +A    + AE +   + ++  R  K AEE   AKS FL
Sbjct: 1901 ALAMKAVEKVSAENVSMVALQKRALAKAVEAETKARNAEAEAIRNVKLAEEAAKAKSIFL 1960

Query: 254  ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            A++SHELRTPLN ++G SE++    +    N+   E    I  S   LL +IN+ILD SR
Sbjct: 1961 ANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSADLLLTVINDILDFSR 2016

Query: 314  IEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            +EA + +L   A +  ++VRE +       + +  +KN++I   I+     ++ D   + 
Sbjct: 2017 MEADKMKLYIIAFNPEEMVREVVRAASYSNKEKTSKKNVKIVHDINLPPMLIYGDPIRLH 2076

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
            QV+ NL+ N++KFT   G + +        T        +KD G GI+  ++  +   F 
Sbjct: 2077 QVLGNLIGNSLKFT-EHGSITIGAKVDSETTEKATLTFWVKDTGIGISPQQLDKLFLPFS 2135

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q   +      G GLGL I +S++ +   G+  + S+   G  V   +   +    +   
Sbjct: 2136 QADESTARKYGGSGLGLSICKSLIESTMKGKIRLDSEENVGTTVWFTVTFDKAKPEVMAG 2195

Query: 485  NHEST 489
            + +ST
Sbjct: 2196 DTQST 2200


>gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 638

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++ +    + R  AE  N ++  FLA+MSHE+RTP+ AILG ++++      P N 
Sbjct: 244 ITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN- 302

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I R+G  LL +IN+ILDLS+I+AG+ E+++  +    IV E   ++ +RA 
Sbjct: 303 ---LQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAA 359

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QY 402
           EK + +  + D  + +V   D   +RQ+++NL+ NA+KFT   G V +TV +        
Sbjct: 360 EKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDE-GVVRLTVRFDEANSCLQ 418

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI   EI  +   F Q       +  G GLGL I   +     GQ  + S+ 
Sbjct: 419 FHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQY 478

Query: 463 REGVEVIAI 471
             G      
Sbjct: 479 GVGSRFTLS 487


>gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1064

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 238 TRKRAE-EENLAKSR----------FLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            R  AE E  +AK            FLA+MSHE+RTP+N I+G  +++   ++    N  
Sbjct: 397 ARNAAEQELVMAKDNAEAASKAKASFLATMSHEIRTPMNGIIGMIDLLLTSSL----NRD 452

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +     I  S   LLN+IN+ILD S+IEAG+ EL     S+ +++   I  +   A EK
Sbjct: 453 QRSMTNTIRDSSFSLLNIINDILDFSKIEAGKLELESLNFSISELLESVIDTITPNADEK 512

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQY 402
            + +    DP++   +  D   +RQV+ NL+ NAVKF+      G V +T+       Q 
Sbjct: 513 RVTLELYTDPNIPHHIQGDPVRIRQVLFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQL 572

Query: 403 ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I I+DNG GI   ++  +   F Q   +      G GLGL I Q+++   GG+  +
Sbjct: 573 VFLTIEIQDNGIGIEAKQLERLFQPFTQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDV 632

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S + +G      L    +    P
Sbjct: 633 SSTVGKGSIFKVNLSFPYIERPSP 656


>gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 2161

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E + AK  F++++SHELRTPL +I G+ +++ L     L NE    Y+  +  +   L+N
Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKL-NEEQLSYLSVVKSNTHRLMN 1975

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN+IL++ RI+  +  L+   IS+  I  E    L+   + K +    ++      V A
Sbjct: 1976 LINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMA 2035

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            DE  + QV+LNL SNAVK+T   G V +  G        + + DNG GI+  +   +   
Sbjct: 2036 DETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2095

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F +    ++    G GLGL IA+S +  HGGQ  + S+  +G     I+P        PE
Sbjct: 2096 FYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIPL-----TQPE 2150

Query: 484  DNHEST 489
                +T
Sbjct: 2151 SESAAT 2156


>gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
 gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
          Length = 608

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E   +++         ++
Sbjct: 369 EKNERERREFVSNVSHELRTPLTSMHSYIEALSEGAW--KNPEVAPDFLKVTLEETDRMI 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G  EL    ++  ++V   +    +    ++KN  I ++       
Sbjct: 427 RMINDLLNLSRMDSGTSELQLEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLW 486

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   + QV+ N+L+NA+K++  GG++   +  T       S+ D G GI + +I  V
Sbjct: 487 LEIDTDKIIQVLDNILNNAIKYSPDGGKITCRLLETHNN-AVFSVTDQGLGIPKKDIAKV 545

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +   A    + G GLGL I++ ++  H G   + S+  +G      LP   
Sbjct: 546 FDRFYRVDKARARKQGGTGLGLAISKEVIRAHNGFIWVESEEGKGSTFYISLPYEP 601


>gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330]
 gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS
 gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330]
          Length = 1035

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|332532320|ref|ZP_08408200.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038187|gb|EGI74633.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 522

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 117/237 (49%), Gaps = 10/237 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ AE    AKS FLA+MSHE+RTP++ I+G + ++  + +     + Y+ Y+  I  S
Sbjct: 3   AKEEAEHLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEKGL----PDEYEHYLDKIKYS 58

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL +IN+ILD S+IE+G   L E   S+  +V          AQ K +     ID +
Sbjct: 59  SDQLLVVINDILDFSKIESGNVNLEEFPFSVNSVVDYIKATFNELAQSKGVTFDISIDEA 118

Query: 358 L-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ----YISIKDNGPG 411
           +   +  D   + QV+LNL SNA+KFT  G   V +         Q    Y ++KD+G G
Sbjct: 119 VKLDLIGDVVRINQVLLNLCSNAIKFTPHGTVSVLIESRKLLDDPQSVCLYFTVKDSGIG 178

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           IAE  +  +  SF Q   +      G GLGL I++ +    GG   + S    G E 
Sbjct: 179 IAEDNLSNLFESFTQADSSTTRKFGGTGLGLTISKRLCQLMGGDITVHSTQGVGSEF 235


>gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19]
          Length = 2129

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 151/353 (42%), Gaps = 24/353 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             + +++L  F   +  FL+     + +    I +    +  LA   + A          L
Sbjct: 1326 VIELASLDEFSETHLDFLNQLTESLGIVLNTIETNTRTEELLAQSQSLA-GELKTQQEEL 1384

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260
             ++N ++            E+E      +E RK  EE        +  KS FLA+MSHEL
Sbjct: 1385 RRTNDELQDKALLLVKQKDEVEAKNKEVEEARKSLEEKAEQLTLTSKYKSEFLANMSHEL 1444

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN++L  ++ +     G L N+    Y   IH  G  L+ LIN+ILDLS+IE+G   
Sbjct: 1445 RTPLNSLLILAQQLYENAEGNL-NDRQIRYAKTIHSCGDDLIQLINDILDLSKIESGFIS 1503

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
             + S++ + +I        +  ++ +N+    + D  L + +  D + + Q++ NLLSNA
Sbjct: 1504 ANISSVKIGEITSFVETTFKPISEARNLRFRIETDYELPASMETDIQRLNQILKNLLSNA 1563

Query: 380  VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426
             KFT   G V + +                       SI D G GI + +   +  +F Q
Sbjct: 1564 FKFTEK-GEVSLRIYSAKKSWKPGLPTLDSAPTVVAFSISDTGIGIPQEKQLIIFEAFQQ 1622

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               +      G GLGL I++ +    GG   + S+   G      +P T V N
Sbjct: 1623 AEGSTSRKYGGTGLGLSISRGLAELLGGTIELESQAGMGSTFTLYIPLTSVTN 1675


>gi|254492357|ref|ZP_05105529.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224462249|gb|EEF78526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 557

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L    Y      ++ ++ L   A + +LI ++           ++AE  N AK+ FL
Sbjct: 129 IGTLCLIDYNPRDFDQTALRRLKAFAHEIELILDMRRTT-------EKAEAANDAKTTFL 181

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+M+HELRTP++ I+G  +++   T+    ++     +    +S   +L++IN+ILD S+
Sbjct: 182 ANMTHELRTPMSGIIGILDILGQSTL----DKAQLNQVSLASKSANQMLSVINDILDFSK 237

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVI 372
           I+A +  ++  A +L ++    I    L  Q +  +           +V  D   +RQV+
Sbjct: 238 IDADKVTVNHEAFNLYEVFSSVIETFALHQQSQKKKFILNCQWDKTLNVNGDPMRLRQVL 297

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGS 428
            NLLSNA KFT   G V VT        + I     + D G GI + ++  +   F Q  
Sbjct: 298 FNLLSNADKFT-TNGEVAVTAKVFDIDAENIRINCDVSDTGIGIEQDQLERLFIPFEQLD 356

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            A      G GLGL I+Q +    GG   + SKL  G      +   +      E+  E 
Sbjct: 357 NASSRKYGGTGLGLVISQRLCELMGGSISVESKLGHGSTFRFFITLQKTSVVSDEECDEV 416

Query: 489 T 489
           T
Sbjct: 417 T 417


>gi|83816430|ref|YP_444297.1| putative redox sensing protein [Salinibacter ruber DSM 13855]
 gi|83757824|gb|ABC45937.1| putative redox sensing protein [Salinibacter ruber DSM 13855]
          Length = 1668

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 10/290 (3%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              L +      +    + D  A L  AK  ++  R+ AE  + AKS FLA+MSHE+RTPL
Sbjct: 1379 RRLVEVIADYATLVLGRVDREAVLRGAKEEAERARQEAEAASQAKSVFLANMSHEIRTPL 1438

Query: 265  NAILGFSEVIELETMGPLNNET----------YKEYIGDIHRSGQHLLNLINEILDLSRI 314
             +ILGF+E I  E  G    E            +++   I  SG+ L+N +  +L+LS++
Sbjct: 1439 TSILGFAEAIGEEVGGDDQTEKTDRSDVDLPALRQFAALIESSGERLMNTLTGVLNLSKL 1498

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
            EAG   L+   + L     + +     +A++  +++  +         ADE G++ V+ N
Sbjct: 1499 EAGEMNLAPEPVDLAAEAEKAVQEFDPQARDAGVDLAAEGGQDAVWARADEGGVQIVLRN 1558

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            LLSNAVK+T  GG V V+      +   + + D G G+   ++  +   F Q S  +   
Sbjct: 1559 LLSNAVKYTGEGGAVRVSARTDGKQDAVLEVVDTGIGMDPAQVEDLFEPFRQESEGLARE 1618

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             +G GLGL +    +    G   + ++  EG      LP  RV N + E 
Sbjct: 1619 YEGTGLGLAVTWKALQQMEGGVEVETEKGEGTCFTVRLPAARVENGLDEP 1668


>gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 873

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 487 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 602

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+         
Sbjct: 603 Q-GVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 658

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFS 714

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP   V   +  D+ +   
Sbjct: 715 KGTTFTFTLP-YTVAESVSVDSEKKND 740


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +     +L  + +++ + F      FL+
Sbjct: 1206 KRTILVENAPTGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVVELASFTPFTAIQKDFLN 1265

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
                ++A S   I      +  L                     K+     +   EK +L
Sbjct: 1266 QIAEMIATSVNTISVNTKTERLLKQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1325

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A      EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1326 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1385

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1386 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1444

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G   + +
Sbjct: 1445 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1504

Query: 392  TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                           S+ D G GIA  ++  +  +F Q      
Sbjct: 1505 RPARDDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1564

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1565 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1606


>gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 569

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 8/269 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + +S    K++LI  +E+        +K AE+ N +KS FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAISDIEHKEELIKLVEIRTRELRLAQKFAEQANQSKSNFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +V+  ++          E +  +  S + LL +IN++LDLSRIE+G + L    
Sbjct: 227 AVLGLIDVLRGDSTSY-----QAELLEQMENSAELLLIIINDVLDLSRIESGHFSLHCHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           + L   + + ++  +  AQEK I    +         + D   + Q++ N++ NA+KFT 
Sbjct: 282 VDLKKKLDQSLVYHRQIAQEKGIAFNVQTHINERLEYYTDSARLTQILFNIVGNAIKFT- 340

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G+V + + +         +KD G GI +  I  + T F Q   +I     G GLGL I
Sbjct: 341 KSGQVDIDLIY-GTHQVTFRVKDTGIGIEKNRIDRLFTPFIQADNSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + ++   GG   + S+L  G   I  +P
Sbjct: 400 TKHLIELMGGSIQVESELEVGTTFILQVP 428


>gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 808

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS +I        + 
Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   ++ + + LL LINEILDLS+IE+G  E S    SL ++ RE       R  
Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 537

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403
           +  + +  +       +  D+  + QVI NL+ NAVKFT  G    ++ G+         
Sbjct: 538 Q-GVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F + +       QG GLGL I +SI+   GG+  + S+  
Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFS 649

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      LP   V   +  D+ +   
Sbjct: 650 KGTTFTFTLP-YTVAESVSVDSEKKND 675


>gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 793

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 9/302 (2%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             +I+      +    ++   +     + +  F     IL         + E E  + L 
Sbjct: 210 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 269

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + A+  N AKS FL+ MSH++RTP+NAI+G + +  +      + E   + +  I 
Sbjct: 270 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 326

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354
            S + LLNLINE+LD+S++E+G   L++    + ++++  I M+Q    +K  +      
Sbjct: 327 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 386

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409
                 +  D + ++QV+LNLLSNA+K+T   G++ + +              I++ DNG
Sbjct: 387 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEITVIDNG 446

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  V   F +   A     QG GLG+ I+++I     G+ L+ S+  +G    
Sbjct: 447 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 506

Query: 470 AI 471
             
Sbjct: 507 FT 508


>gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8]
 gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5]
 gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96]
 gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704]
 gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1]
 gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG]
 gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8]
 gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5]
 gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96]
 gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704]
 gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1]
 gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG]
 gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137]
 gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012]
 gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043]
 gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302]
 gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342]
 gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346]
 gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630]
 gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62]
 gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 609

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|170725402|ref|YP_001759428.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810749|gb|ACA85333.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 819

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 125/278 (44%), Gaps = 13/278 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q   D   A ++       + ++RAE+ N  KS FL+ MSHELRTP+NA+L       
Sbjct: 269 KLQEANDQAEARVKARTLELQQAKERAEQANQTKSSFLSMMSHELRTPMNAVL----GSL 324

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       ++ I     S ++L+ ++N+ILD+++IEAG+ +L +   S+ +++   
Sbjct: 325 DLLSLSKQTPESRDLIETATTSAKNLIFILNDILDINKIEAGKMQLEQRDFSITEVIDNV 384

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT----AIGGRVH 390
           + +    A  K I++    DP++   +  D   +RQ+I NLL NA+KFT       G V 
Sbjct: 385 VQIYYPLANGKRIKLDVTEDPTIPKYLEGDAVKVRQIIFNLLGNALKFTSTTTEKQGEVQ 444

Query: 391 VTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + +              SI DNG GI +     + T F Q   +      G GLGL I  
Sbjct: 445 LNINIVEHNSIIYKVAFSIVDNGIGIEKETQKKLFTPFIQAQRSTTREYGGTGLGLAICG 504

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           ++    GG+  + S   EG      LP  R      E 
Sbjct: 505 NLAQLMGGEIALTSCPNEGSTFKVELPFWRSKQHTDEP 542


>gi|253578663|ref|ZP_04855934.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849606|gb|EES77565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 943

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              +       + L    +  +   A K    A  E A+ +++   + A+  N AK+ FL
Sbjct: 513 VATVWVLLIFGWLLTTMAMIAMRLSARKKAQKAAQETAEEMAELA-EHAQAANKAKTAFL 571

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSH++RTP+NAI+GF+ +     M    ++  K  +  I  S +HLL+LIN++LDL+R
Sbjct: 572 SHMSHDMRTPMNAIMGFTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDVLDLTR 627

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372
           +E+G+ + +     L  I    + + +     ++I    + + + + +V  D   +R V+
Sbjct: 628 VESGKVKYNPVPTDLKSITDFALDITKGFLTNRDISFKIQREEAKIPNVLVDSVRLRDVL 687

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +N+LSNAVKFT  G  +          G      +  I D G G++E     V   F Q 
Sbjct: 688 VNILSNAVKFTPDGETITFEARCQEKGGDGYINMHYRISDTGIGMSEEFTKEVFEEFAQE 747

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +++   G GLG+ I +  +   GG   ++SK  EG      +P  
Sbjct: 748 DSDVRTQYHGAGLGMAIVKKYVDMMGGTISVQSKKHEGTTFTVDIPLE 795


>gi|83313114|ref|YP_423378.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947955|dbj|BAE52819.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 658

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/397 (24%), Positives = 168/397 (42%), Gaps = 14/397 (3%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L++   +      +      R+ + V  + +   + L  LV        +  ++    
Sbjct: 6   VRLAIAIVLAVGLAALARARTSRMIIAVTHLHLYTFFFLNALVFAHPLLDRHGGMFFP-- 63

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            LIA+S+   +   L     L     +V+L   A +       +   ++        Y+ 
Sbjct: 64  -LIAMSMFMFAPGPLRRVALLCAVGPLVSLLAWAELREVPESPADMAIITLMTG-VAYLV 121

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               +   + +  +     L+     A+    + ++ AE    AKS FLA MSHE+RTP+
Sbjct: 122 GATARIQFERMGRRQFL--LVEGERQARITLLDAKEAAEAGTRAKSEFLAVMSHEIRTPM 179

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ILG   ++    +   +    +E +  +H S + LL +++ ILDLS++EAGR E   S
Sbjct: 180 NGILGMVRLLLDRPLEAED----RERLEMVHHSAELLLGILDNILDLSKVEAGRMEFERS 235

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             S    +     +L  RA+EK +E+   I P +   V  D   +RQ++LNL  NA+KFT
Sbjct: 236 PFSPARTLAGIQTLLSARAREKGLELSHAIGPEVPEWVEGDGGRLRQILLNLAGNALKFT 295

Query: 384 AIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
             G   + V +          S+ D G G+ E EI  +  +F Q   +I     G GLGL
Sbjct: 296 DSGHVLIRVGLAGDGSGRLEFSVTDTGIGLGEAEIGRLFHAFAQADSSITRRFGGTGLGL 355

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477
            I + ++   GG+  + S+   G        LP  R 
Sbjct: 356 AICRRLVEAQGGEIGVESRPGVGSRFWFRLALPAGRA 392


>gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 880

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 179/450 (39%), Gaps = 35/450 (7%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
             L VL++     +   +     W  I+  +  + L L    M  + K G     R+  +
Sbjct: 14  TLLIVLIIVTRWIYPYLSKSVVGWKTISYGLLFSLLGLLVMQMPLETKHGLHMDVRLVSV 73

Query: 112 VGQIAIGLCWTLLT----LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY--AVFL 165
                 G  W++L     +          +     A ++ AL  +A     L        
Sbjct: 74  ALAGIFGGPWSVLITSVVVGVYRISLGGAIIFPTGALIVTALLSAAAYRIRLRNEKRFLY 133

Query: 166 SFFPVVVALSTQAIMSMHVLDI-------------SLAGMLATALSFFTYITYHLFK--S 210
             + + + +  Q ++   +                 +         F++ + Y + +  +
Sbjct: 134 IAWGLGLVIGVQTVLWSFLAPADSMKLFQSEFATTFIIFHTIAVPVFYSVMAYEIKRYET 193

Query: 211 NVKILSCQAEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
              ++  +   ++L+            L  E +  AEE + AK  FLA+MSHE+RTP+N 
Sbjct: 194 EQTLVHYKEHLEELVEVRTQELASNNRLLVEAKLSAEEASRAKGEFLANMSHEIRTPMNG 253

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + ++    +     +  ++Y   +  S  +L+ +IN+ILD S+IEA +  L +   
Sbjct: 254 IIGLNHLLRQTEL----TDQQQDYSNKMLLSANNLITIINDILDYSKIEANKIVLEQIDF 309

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
            L +++     ++ ++A EK +     +   +  +   D     QV++NLL+NAVKFT  
Sbjct: 310 DLFEVLHNVSNIVNVKAYEKGLHFHFSVHHEVPQMLVGDPHRFAQVLVNLLNNAVKFTER 369

Query: 386 GGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G V V +      G  +    ++ D G G+   +   +   F Q  ++      G GLG
Sbjct: 370 -GEVSVAIDQLPSTGSSVLLRCAVSDTGIGLTREQQSKLFRHFTQADMSTTRKYGGTGLG 428

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I++ ++   GG   ++S+   G      
Sbjct: 429 LVISKELVQLMGGTLTVKSEQGNGSCFSFT 458


>gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 1298

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 143/267 (53%), Gaps = 12/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E           ++ A   + AKS FLA+MSHE+RTPLN ++GFS+++    +    N
Sbjct: 647 ITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----N 702

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +Y+  I+ SG+ LL +IN+ILD S+IE+G+ EL      + D+V + I ++  ++Q
Sbjct: 703 EMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVILFQSQ 762

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K++E+   I+P L  +   DE  ++Q+++NLL NAVKFT   G + + V       + I
Sbjct: 763 KKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLR-GEIELKVQKLRMDAERI 821

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI + +   +  +F Q   ++     G GLGL I+ +I+   G    ++
Sbjct: 822 ALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTSLSLK 881

Query: 460 SKLREGVEVIAIL--PNTRVLNFIPED 484
           S   EG E    +  P   V+    ED
Sbjct: 882 STPGEGSEFYFDIEVPYEEVIAGEEED 908


>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N +KS FLA+MSHE+RTP+NAI+G  ++       P       +Y+  I  S   LL LI
Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLI 468

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+  + +    L +I+ +   ++  +A EK +E+   +D      +  D
Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGD 528

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              + QV++NL SNA+KFT   G V ++              ++++D G G++  +I  +
Sbjct: 529 PHRLGQVLINLTSNAIKFTQQ-GEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERI 587

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q   A      G GLGL IA  ++   GG+  + S    G      
Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|328473184|gb|EGF44032.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 806

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229
             ++   L  +L        YI   + +   KI   +             E   LI +  
Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E S S   +  I+     +      EK ++
Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449

Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                   +   +  D+  +RQV+ NLL+NAVKFT   G V VT+            I+I
Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568

Query: 466 VEVIA 470
                
Sbjct: 569 TTFTV 573


>gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 870

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R  A + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   + 
Sbjct: 625 IQRYKDTEDALITARDHAMQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LNAFSK 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++G I+ +   LL LIN+ILDLSRIEAG  E + +  +L  I+++     Q  + 
Sbjct: 683 EEVQEFVGLINTNCTLLLALINDILDLSRIEAGTMEFNLAEFNLNYIMQDIYDS-QYLSM 741

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + +E+  +       S+  D   ++QV+ NL++NA KFT   G + +           +
Sbjct: 742 PQGVELRIECPVEEGKSIHTDIVRLKQVVNNLVNNAKKFTVQ-GSITIGYTVDEPEYTTV 800

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI E     +   F +         QG GLGL I Q+I+ +  G   + S++ 
Sbjct: 801 YVEDTGKGIPEEAAKHIFERFYKVDN----FVQGAGLGLSICQTIVEHLRGTISVFSQVG 856

Query: 464 EGVEVIAILP 473
            G      +P
Sbjct: 857 RGTRFEVRMP 866


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 5/375 (1%)

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
               R  ++V   A G+   +  L       PE   +    +  IA+++ +  +      
Sbjct: 327 RRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQIAIAVRSSKDRTRLEE 386

Query: 163 VFLSFFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           +          L  Q   +   +         L  +          L ++N ++      
Sbjct: 387 LLEETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEETNAQLEEQTQL 446

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +    +L   + +  E     E  N  KS FLA+MSHELRTPLN+ L  ++++     G
Sbjct: 447 LELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQG 506

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L++E  + +   I  +G  LL LIN+ILDLS++EAG+ ++   +  L  +  E      
Sbjct: 507 NLSDEQVR-FAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFA 565

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + AQ+K +    +++P +   +  D + + Q++ NLLSNA+KFT   G V + +   +G 
Sbjct: 566 ITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEK-GEVSLRIYPDAGG 624

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +++D G GI E +   +  +F Q   +      G GLGL I++ +    GG   + 
Sbjct: 625 RIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVT 684

Query: 460 SKLREGVEVIAILPN 474
           S+L EG      LP 
Sbjct: 685 SRLGEGSIFTLSLPP 699


>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
 gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
          Length = 1096

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 9/345 (2%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +++ LS+ A+    L          +  A     + S+ +   ++  ++    S++  + 
Sbjct: 542 MVVVLSLCAVGAAALGLVYAQEISTLTSAGDRLLLDSIFLKISAVLLIIVAVSSWWVVLG 601

Query: 205 YHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                     L+ Q E     I   +   +     ++ AE  N AK+R++A +SHELR+P
Sbjct: 602 SEGRHLAQDDLNRQNELLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSP 661

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+ILG+S+++         +   +  I  I RSG+HLL L++E+LDL+RIEA R  L  
Sbjct: 662 LNSILGYSQILLKN---EQLDAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEP 718

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           + I     + + + M++ +A+ K + +       L   V AD K +RQ+++NLL+NA++F
Sbjct: 719 APILFAAFIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRF 778

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V + V  T G      + D G GIA  +   +   F +G+      E G GLGL
Sbjct: 779 TDT-GSVTLHVECT-GVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGL 836

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDN 485
            I + ++    G   + S   +G   +  LP   +     +P+ +
Sbjct: 837 AITEKLILMMNGSLNLISTQGQGSTFVVRLPLMEINAFEALPQRD 881


>gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467]
          Length = 609

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKREFW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1289

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 152/346 (43%), Gaps = 30/346 (8%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              L    I ++  +   L   ++   +        L ++N KILS     +  +      
Sbjct: 831  AILVLWRINNIKEVAKRLEIAVSERTADLLSANRRLEEANTKILSQGEILERTVN---QR 887

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                +  + +AE  +  KS FLA+MSHE+RTP+NAI+GF  +++ +    +++   +++ 
Sbjct: 888  TEELEIAKSKAEHSDKLKSAFLANMSHEIRTPMNAIIGFLHILDNKD---ISDVEREQFN 944

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-RAQEKNIEI 350
              I +S + L+ LI++ILDLS IEAG  E+S    ++ ++  E   + +   +Q+K   +
Sbjct: 945  HIIRQSSKSLMALIDDILDLSAIEAGEAEISPQPCNVGELCDELGALFRESLSQDKKNNV 1004

Query: 351  FQKIDPSLSS---------VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
              ++   +           V  D   ++Q++ NL+SN++KFT   G +H+    +  +  
Sbjct: 1005 DFRLTGDVPDHFLVGGATLVLIDPLRLKQILWNLISNSIKFTDE-GEIHLGYSVSQDKEM 1063

Query: 401  -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                     ++D G GI + E   +   F +   A K   +G GLGL I Q++     G+
Sbjct: 1064 LEKASIEFIVQDTGIGIPKEEHQQIFNRFHKLDKAGKKLYRGTGLGLAITQTLTQLMEGR 1123

Query: 456  FLIRSKLREGVEVIAILPNTRVL------NFIPEDNHES-TQYKCY 494
              + S    G       P   V         +P +   +   +  +
Sbjct: 1124 ITVDSTPGLGTTFKVTFPFNPVEIYPQKSPSLPTETGAAQADFSDF 1169


>gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 576

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 144/289 (49%), Gaps = 30/289 (10%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  S QHLL+LIN+ILDLS++EAG   L   A+ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D G GIA+ ++  +  +F Q   ++    +G G
Sbjct: 469 ILGGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           LGL + + +   HGG   + S    G   +  LP        P    E+
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR------PPATEEA 571


>gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 591

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI++      +   +   D   
Sbjct: 424 LALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTNPPIIIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GGQ  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGSTFRVTLPKK 590


>gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 939

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 141/282 (50%), Gaps = 9/282 (3%)

Query: 212 VKILSCQAEKDD---LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + +    AEK     L  ++    +      +   E N  KS+FLA++SHE+RTPL AIL
Sbjct: 434 IALYRRGAEKRAKQQLTEQVTQRTAELQAIAQELREANDVKSQFLANISHEIRTPLTAIL 493

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G ++ +  E   P   E+ K+ +  I R   HL +LIN++LDLS+IEA R EL+ S   +
Sbjct: 494 GQTDALINELYEP---ESLKDELRVIQRHSDHLKSLINDVLDLSKIEANRLELNISCFDI 550

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387
           +++V +   M   +A+ KN+ +              D   ++Q+++NL +NA+KFT   G
Sbjct: 551 VELVNDVHAMFITQAKAKNLRLILDNQVGNEFYTKLDLIRVKQILINLCANAIKFTHA-G 609

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           ++ + +  +      I +KD G G++  ++  +   F Q   +I     G GLGL ++Q 
Sbjct: 610 QIIIALNKSEQGLVII-VKDTGIGMSSKQLKLIFECFSQADNSISRRFGGTGLGLSLSQQ 668

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + A  GG   ++S+ ++G +    LP   V         +S 
Sbjct: 669 LAAMMGGYISVQSEYKKGSQFSFFLPCAEVNKSQSLIETQSA 710


>gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116]
          Length = 985

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +   ++L+ A    +E        RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++
Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P+     K Y   I+RSG+ LL ++N++LD S+IEAG  E+      L  +V +
Sbjct: 496 IDSGLNPM----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
              ++  +AQEK +     I+  +   W  D   + QV+ NL+ NA+KFT  G   ++V+
Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVS 611

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +           + D G GIA+ +  T+  +F Q    +     G GLGL I++ I+   
Sbjct: 612 LNPEDESQVLFEVSDTGIGIAKKDKKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GG   + S+   G      +P        P +       +C
Sbjct: 671 GGCLDVDSEEGHGSRFWFSIPLE---ESEPVETVTIANARC 708


>gi|86742728|ref|YP_483128.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
 gi|86569590|gb|ABD13399.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
          Length = 1406

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 15/351 (4%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +L  + +++ S F   +   +      + +    IM+    +  LA             +
Sbjct: 778  VLGVIELASFSPFSELHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 836

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              L ++N ++    A  ++   E+E+A+   +E  ++    +  KS FLA+MSHELRTPL
Sbjct: 837  VELQRTNNELEEKAALLEEKNHEIELARIGLEEKAEQLALSSQYKSEFLANMSHELRTPL 896

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N++L  ++++       L+     ++   IH +G  LL LIN+ILDLS++EAG+  +  +
Sbjct: 897  NSLLILAKLLADNPDRNLSR-KQIDFAETIHSAGSELLELINDILDLSKVEAGKMNVDAT 955

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             +    +      +    A+EK +     + P +      DE+ ++QV+ NLLSNAVKFT
Sbjct: 956  TVRTAALCDAVAGVFGPVAEEKGLSFQVNLAPDVPAEFVTDEQRLQQVLKNLLSNAVKFT 1015

Query: 384  AIGG-RVHVTVGW-----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
              G  R+ VTV             ++G     ++ D G G+A  ++  +  +F Q     
Sbjct: 1016 DTGTVRLDVTVARPDLPFLSPSLCSAGTVLSFAVTDTGIGVAVEKLRMIFEAFQQADGTT 1075

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                 G GLGL I++ I    GG   + S +  G      LP+       P
Sbjct: 1076 SRRYGGTGLGLSISKEIARLLGGAIAVSSVVGRGSTFTLYLPSAPPAQTPP 1126


>gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 1015

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 200/472 (42%), Gaps = 26/472 (5%)

Query: 34  DREIITLHVESLFRVSPIL-PLFVLLVANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90
            +++     + L R S ++  L V+ V +I  +  +  +     + L  + +    + +G
Sbjct: 165 AKQLQLEKSKELVRDSLVIGSLLVIAVYHIILYMLRRNDVTPLYFGLFCICIAVRTMLVG 224

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144
            + +   +     + W        I +G  + +  +                       T
Sbjct: 225 SRFVLE-VFPAFSWEWFAKASYLTIYVGEFFLISYIYHLFPQFLSRKVWRLTQLFTMGLT 283

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +L+  +   + ++ L      S   V+ A+     ++    + ++  +L  +L F T + 
Sbjct: 284 VLVLTTRIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 343

Query: 205 YHLFKSNVKILSCQAE--------KDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLA 254
             L ++ V       +           L+  ++ +++ S   R  +R    +  K  FLA
Sbjct: 344 DTLNRNGVLATPALLQFGVLGFVFLQALLLSMKFSRAFSQVERLSERLLTLDKLKDEFLA 403

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
             SHELRTPL+ I+G ++ +   + G L +    + +  +  SGQ L +L+N+ILD S++
Sbjct: 404 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVV-DLLRLMKVSGQRLAHLVNDILDFSKL 462

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           +     L    ++L   V   + +L   AQ+K + +  ++   +  V ADE  ++Q++ N
Sbjct: 463 KHQEIGLVIVTVNLRLSVELTLQVLNPLAQKKGLLLSHQLPDDI-YVMADENRLQQILHN 521

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+ +T   G V VT     G+   + I D G GIAE +   +  SF Q     +S 
Sbjct: 522 LIGNAIAYT-ENGTVTVTARRMYGQ-VSVQISDTGIGIAEADQVRIFESFEQVDPLHRSQ 579

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           + G G+GL I + ++  H G   + S+L EG      LP        P+++ 
Sbjct: 580 QGGTGIGLSITKKLIELHDGSIGVTSRLGEGSTFSFTLPLA--GEGKPKESP 629


>gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 876

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 11/293 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           F  +       ++          D   E+  ++    E    AE  N+AKS FL+ MSHE
Sbjct: 312 FWMLVRVYRADDLNTPQLITVFSDRTEEVR-SRQALQEAMMSAERANMAKSEFLSRMSHE 370

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLNAI+G + +         +    ++ +  I  S +HLL LIN++LD+S+IE+ + 
Sbjct: 371 IRTPLNAIIGLTTIAAASI---RDTAKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKM 427

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLS 377
            L +    + ++V   +  +  +A+EK IE  + ++     +    D   + Q++LNL S
Sbjct: 428 VLQDEPFDIFELVNGFVSTVYAQAKEKGIEFRETMEGFGEDTVFIGDSLRLNQILLNLSS 487

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFTA GG + + V               + D G G+ +  +  +   F Q    I  
Sbjct: 488 NAVKFTAPGGCIRLEVSRHRNGNAADVLRFILSDTGIGMTKDAMERIFQPFEQADATISK 547

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IPEDN 485
              G GLG+ I ++++   GGQ  I S+   G   I  +P  +     +PE +
Sbjct: 548 RYGGTGLGMSITRNLITLMGGQIQIESESGVGTTCIVDIPFKKGEGSCLPEPD 600


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 5/238 (2%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE   +  +  F+A++SHELRTP+  + G+SE I  +  G   +E  KE    I+ 
Sbjct: 353 RDMTEERQLDKLRKDFIANVSHELRTPIAMMQGYSEAIVDDIAG--TDEEKKEMASVIYD 410

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+NE+LDL+R+EAG  +L+   + L   +       Q  ++EK I++  +   
Sbjct: 411 ESLRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIKLESEFSI 470

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +      D   + QV+ NL+ NA++ T   G V +TV  +  +G  + + D+G GI E +
Sbjct: 471 TEDDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVK-SEEKGLMVEVSDSGSGIPEED 529

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P V   F +   A      G GLGL IA++I+  H GQ  ++SKL++G     ++P 
Sbjct: 530 LPFVFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFSFVIPR 587


>gi|253566766|ref|ZP_04844218.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265763189|ref|ZP_06091757.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|251944329|gb|EES84818.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255797|gb|EEZ27143.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 639

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE ++    E + RAEE N  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILDLSR+EA +  L+     ++ + R+ +  +++ 
Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
            +E       +       +  D + ++QV++NLL+NA KFT   G + +           
Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI + +   V   F +         QG GLGL I +  +   GG   I   
Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626

Query: 462 LREGVEVIAILPN 474
              G   +   P 
Sbjct: 627 YEGGARFVVSHPL 639


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 5/275 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            IT    +          +++ L   L    ++ D T ++AEE    ++ F++ +SHELR
Sbjct: 271 RITTRDGRELFIQNRYAPQRNALGTLLSAIANVRDITAQKAEE--ERQNTFISVISHELR 328

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP++ I GF+E +     G    E Y+E +  I      L   I ++LD+SRI AG   L
Sbjct: 329 TPVSIIKGFAETMLR-PDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRIAAGGLRL 387

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             S +SL  +V+E +     +     IE   ++   +  V+AD + +RQV  NL+ NAVK
Sbjct: 388 EYSDVSLQLLVKEVVRRFAAQV-GDRIEFEIRVPDDMPPVYADYERLRQVFTNLIENAVK 446

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++  GG + +      G    + + D G GI   E   +   F +    ++    G GLG
Sbjct: 447 YSPNGGTIRIGA-RAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSGLG 505

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           L I ++I+  HGG+  + S++  G   +  LP +R
Sbjct: 506 LYITRAIVEAHGGRIWVESQVGRGSRFLFTLPLSR 540


>gi|60681363|ref|YP_211507.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60492797|emb|CAH07571.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 637

 Score =  270 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE ++    E + RAEE N  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 393 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 449

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILDLSR+EA +  L+     ++ + R+ +  +++ 
Sbjct: 450 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 509

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
            +E       +       +  D + ++QV++NLL+NA KFT   G + +           
Sbjct: 510 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 568

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI + +   V   F +         QG GLGL I +  +   GG   I   
Sbjct: 569 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 624

Query: 462 LREGVEVIAILPN 474
              G   +   P 
Sbjct: 625 YEGGARFVVSHPL 637


>gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 576

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 24/276 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   A+ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D G GIA+ ++  +  +F Q   ++    +G G
Sbjct: 469 ILDGDWPVHSFSLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL + + +   HGG   + S    G   +  LP  
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 576

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 3/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   + +   +++  I    + L+ L
Sbjct: 342 LERVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVALKFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + +  + + ++V E I +L+++A++KNI+      P    +   
Sbjct: 400 INDLLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVDIKVPDGLEMNIY 459

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV   S     I +KD G GI E EI  +   F
Sbjct: 460 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSNGMVVIKVKDTGIGIPEKEIERIFERF 518

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +          G GLGL I + I+  +GG+  ++S+   G E   I+P  +  +
Sbjct: 519 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVIIPINKKAD 573


>gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 672

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 173/456 (37%), Gaps = 25/456 (5%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGE 102
                   + +L +A       +     +   + L          +L   +   D     
Sbjct: 93  LVECLFCAVALLKLAGPDLSVGRPRHLALLVGVCLCATLVSGGLAALVFGLRGGDHLPLR 152

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
              W     +G + +  C  LL L        E          L AL+I++++ F     
Sbjct: 153 AVSWIAGNALGLLTLVPC--LLALSRARELLKERPVTRSGWVALAALAITSVAVFGQSRY 210

Query: 163 VFLSFFP----------VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
             L   P           V+  +   I+   V                  +T       +
Sbjct: 211 PLLFVIPPALALLALELEVLGAALGVIIVGAVAVWFTGVGSGPITLVQGDLTERALFLQL 270

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +         L +     + L    +  AEE    K+ FLA+MSHELRTPL A+LGF++
Sbjct: 271 FLGVSILSALPLASTSAQRRRL----QAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQ 326

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P  +   + Y+  +  +G+ L   IN+ILD S++EAG+ ++    +S+ ++ 
Sbjct: 327 LVERQ---PELSAETRAYVQRVTSAGKALRATINDILDFSKLEAGQVDIKPQPMSVAELT 383

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           RE + M   +A+EK + +       L   + AD   +RQV+LNL+ NAVKFT + G + V
Sbjct: 384 REAVDMFAAQAREKGVLLRLADLSDLPLLIEADPDRLRQVLLNLIGNAVKFTEV-GEIAV 442

Query: 392 TVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                +        + D GPG++  +   +   F Q          G GLGL I + ++ 
Sbjct: 443 QARLDARADHIVFEVSDTGPGMSADQSKRLFQRFSQVDAGAARKHGGTGLGLAICKGLVE 502

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             GG   + S+  +G      +P             
Sbjct: 503 AMGGSIGVDSRQGQGSRFWFTIPAILAEPASEPSTP 538


>gi|207723589|ref|YP_002253988.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           MolK2]
 gi|206588791|emb|CAQ35754.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 610

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP- 70
           +   + P  + LGL   + ++ D     L          I    VL V  +  ++     
Sbjct: 1   MTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGSR 60

Query: 71  -IFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     G+ W     
Sbjct: 61  LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 120

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++A             
Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 178

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L   ++F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 179 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +ET    +  +    Q +  L 
Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 287

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 347

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 464

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 465 AQPRSEQK 472


>gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
 gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
          Length = 720

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 12/254 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I E +VA+      ++RAEE N  KS FLA++SHE+RTPLNAI+GFS ++ +      +
Sbjct: 476 FITERKVAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILTMT----ED 531

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  KEY+  I ++   LL LIN++LDLS+IEAG  +L  S  +L  ++     +++ R 
Sbjct: 532 EEEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFALNGVLMTLKGVVESRL 591

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402
           Q     IF+   P    V +++  ++Q++LN L+NA KFT+ G    +  G+    +  Y
Sbjct: 592 QSSVELIFEPGMPDYYVVCSEKNRLQQLVLNFLTNACKFTSTGS---IRYGYEVREKEIY 648

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI E ++  +   F +      S +QG GLGLPI Q I+ N GG+  + SKL
Sbjct: 649 YYVTDTGTGIPEDKLHLIFERFIKLD----SFKQGTGLGLPICQLIIQNMGGEIGVNSKL 704

Query: 463 REGVEVIAILPNTR 476
            EG      LP   
Sbjct: 705 GEGSTFWFTLPLKP 718


>gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1400

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 17/346 (4%)

Query: 159  LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            LP         V+   S      +H+  +                         +     
Sbjct: 841  LPIQYEDQVLGVIELASFSRFSEVHLAFVDQFVNTIGVSINTIIANARTESLLSESQRLT 900

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E      EL+ + +  +E        +  KS FLA+MSHELRTPLN++L  + ++    
Sbjct: 901  TELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNP 960

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             G L+ E  +++   IHRSG  LL LIN+ILDLS+IEAGR ++    + ++ ++      
Sbjct: 961  DGRLS-EQEEQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRAKKLPVVKLLDYVNAT 1019

Query: 339  LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +  A ++ +     +   +   +++DE+ ++Q++ NLLSNA+KFT+ GG V + V    
Sbjct: 1020 FRPLAVDRGLSFEITVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VKLHVERAP 1078

Query: 398  GRG------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G                 S+ D G GI   ++  +  +F Q          G GLGL I+
Sbjct: 1079 GEKFSEETLRSADAVVAFSVTDTGIGIPPEKLSVIFEAFQQSDGTTSRKYGGTGLGLSIS 1138

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHEST 489
            + I    GG+ +  S++  G      +P+    ++      +  +T
Sbjct: 1139 REIAGMLGGRIVAESEVNVGSRFTLYVPSHYAGIVPAPDPSDPRAT 1184


>gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 769

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 131/253 (51%), Gaps = 15/253 (5%)

Query: 226 AELEVAKSLSDETRKRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           A +   K +  E R +A  EE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 525 ALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 580

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  KE+   I  + + LL L+N+ILDLS+IEAG+ +   S  ++  + R      Q R 
Sbjct: 581 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
           +   + ++ +I      +++++  + QVI N L+NA KFT  G    + +G+     G Y
Sbjct: 641 KG-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI    +P V   F +      S  QG GLGL I Q+I+ N  G+  + S+ 
Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 753 GKGSTFWFTIPCA 765


>gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
            Ether]
 gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS
 gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 1035

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|153838024|ref|ZP_01990691.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149748558|gb|EDM59417.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 806

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229
             ++   L  +L        YI   + +   KI   +             E   LI +  
Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E S S   +  I+     +      EK ++
Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449

Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                   +   +  D+  +RQV+ NLL+NAVKFT   G V VT+            I+I
Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568

Query: 466 VEVIA 470
                
Sbjct: 569 TTFTV 573


>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1364

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 676 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 795 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            S    G E   ++   +      + +  S
Sbjct: 855 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 884


>gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 881

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 175/470 (37%), Gaps = 29/470 (6%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           +      +  F+ E   L           +   VL+ A I   +   P   +       V
Sbjct: 1   MEETLRLRQAFEAEEHEL--RLRQSKVACILGIVLIPAGIALDYISYPDQLLSLAAIRLV 58

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            AA +++   +   D             +      GL   + ++      T    + Y +
Sbjct: 59  AAALIAVIYALHFWDKTTP--------YVRYLTMAGLLIAVASISLIIAMTDGAASTYYT 110

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI-SLAGMLATALSFFT 201
              LI  ++  L+      A  L    +++ +   ++   H   + SL   L   +    
Sbjct: 111 GLFLILFAVGVLAPMQPFEATLLCIATLIIYIIGCSVQPEHENTVKSLLNNLYFLVLTCI 170

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                +  +  +  +    K  L A+ E   +L           +  KS+F A++SHELR
Sbjct: 171 ISVTAVHFNYRRRFNEFQLKYKLAAQHEELSAL-----------DRLKSQFFANVSHELR 219

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  IL   E ++ +           E +  I  +   LL L+N+IL L R+E GR  L
Sbjct: 220 TPLTLILAPVEKLKSDVASLGAPAA--ELLEVIENNALRLLRLVNDILGLIRLEEGRASL 277

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
            +  I +   +      ++  A  K IE+          + AD   + ++I N+++NA+K
Sbjct: 278 VKKQIDMAHFLSHTTASMKHLAAMKGIELTLSEPQGDLRIDADPDALEKIIGNVIANAIK 337

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GR+ V      G    + I D G GI   ++P +   F Q   +     QG+GLG
Sbjct: 338 FTPPEGRIDVAAAH-EGDMVTVRIADTGIGIPPEQLPHIFDRFYQVDGSATRRHQGLGLG 396

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHE 487
           L + + ++  HGG   + S    G   +   P      + L   PE   +
Sbjct: 397 LALVRELITRHGGDVAVSSDSGRGTTFVLRFPQAAPESQQLAGRPEATPD 446



 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 113/287 (39%), Gaps = 35/287 (12%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                 +   L ++NV++      KD L    E   +L    R  A          L +M
Sbjct: 608 FIRAAQLERDLQRTNVEL------KDSLQQLRETEAALVQNARLSA----------LGTM 651

Query: 257 S----HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +    HE+  PLN +    ++   +     + +T  + + DI      +  ++ ++   +
Sbjct: 652 AAGLLHEIGNPLNFMGTALQLAARDPTIQGDPDTA-DTMKDIQAGYDRIHRVVTDLRGFT 710

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
              A +         +   +      L+  A  +      +       V+  +  + QV+
Sbjct: 711 ---APQKPEHPRPFPIESAIDHA---LRFTAHVQKGINITRDISENGIVFGSQSTITQVL 764

Query: 373 LNLLSNAV---KFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +NL++NA+   +      +  +++  W  G   ++S++DNG GI       +   F    
Sbjct: 765 VNLIANAIAAVRTVEEKRQPEISISSWIQGNELFVSVRDNGTGIDPKIQSQIFDPFF--- 821

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + K   +G+GLGL ++  I+ANHGG   ++S L +  E    LP +
Sbjct: 822 -STKDVGEGMGLGLAVSHRIIANHGGSLSVKSSLGDWTEFRFNLPLS 867


>gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 5/250 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E   +   ++++ A E    ++ F A++SHELRTPLN ILG  +++  + +         
Sbjct: 286 ERKNTEL-KSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILRRDLLDKEKPIDKG 344

Query: 289 EYIGDI---HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           + I +I    ++   LL LIN ++D ++++AG +E+     +++ +V E  + +      
Sbjct: 345 KIINNIDIERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVVEEITLSVAGYIIN 404

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            NI +    D     +  D   + +++LNLLSN +KFT   G + V + +       +S+
Sbjct: 405 NNINLIFDTDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVNI-FDGEEYITLSV 463

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI E ++  +   F Q   +     +G G+GL + +S++  H G   + SK   G
Sbjct: 464 EDTGIGIPEEKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMHDGTISVESKYGVG 523

Query: 466 VEVIAILPNT 475
            +    LP  
Sbjct: 524 TKFTIKLPVK 533


>gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248]
          Length = 609

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        N E    ++         ++
Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            +IN++L+LSR+++G   L    ++  +++   +    +  +  +KN +I ++       
Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+L+NA+K++  GG +   +  T       SI D G GI + ++  V
Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A   A+ G GLGL I++ ++  H G   + S   EG      LP      
Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605


>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1626

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 11/309 (3%)

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               +     +       +      + +     +      +  I      +      ++ A
Sbjct: 834  EPYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEA 893

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            +  N AKS FLA+MSHE+RTP+NA+LG  ++++   +        + Y+     + + LL
Sbjct: 894  DTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV----QQQGYVTKAQTAAKSLL 949

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
             L+N+ILD S+I+AG+ +L     S+  ++R+  ++L       ++E+   +D +L   +
Sbjct: 950  GLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWL 1009

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGPGIAEGEIP 418
             AD+  ++Q+++NL  NA+KFT  G  +  +              SI D+G GI+E +I 
Sbjct: 1010 LADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIE 1069

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476
             + T F Q   +      G GLGL I++ ++   GGQ  + SK+  G         P   
Sbjct: 1070 RIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVME 1129

Query: 477  VLNFIPEDN 485
            V    P  +
Sbjct: 1130 V-EANPRAD 1137


>gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
          Length = 612

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +SI D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 854

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 9/243 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +E ++ AE  ++AK RFLA+MSHE+RTPL +I+G++E ++ E       +  K+ +
Sbjct: 339 RQQLEEAKEEAEYHSMAKQRFLANMSHEIRTPLQSIIGYAEALKNE------EKPRKQDL 392

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +H + +HLL L+NE+LD SRI + R+   E   S+  ++ E + +L+  A  K + + 
Sbjct: 393 ETLHSASEHLLYLVNEVLDYSRIISDRFTFEERVFSINPLLNEVVQVLRPTALSKGLILR 452

Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--IKDN 408
            +        +  D   +RQV+ NLL+NA+KFT  G  V    G  +G    I   I D 
Sbjct: 453 LENSLKPNLYLHGDPFRLRQVLYNLLTNAIKFTENGEVVLKVTGHETGNAAKIEYQISDT 512

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++  ++  +   F Q   +I+    G GLGL I ++++    G   + SK  EG   
Sbjct: 513 GIGLSADQVERIFNQFEQADPSIQRKYGGTGLGLSIVKALVEGMSGNIHVTSKPGEGTTF 572

Query: 469 IAI 471
              
Sbjct: 573 FVT 575


>gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB]
 gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1026

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 136/292 (46%), Gaps = 32/292 (10%)

Query: 225 IAELEVAKSLSDETRKRAEE------------------ENLAKSRFLASMSHELRTPLNA 266
           I E + A++     R+  EE                   N AKS FLA+MSHELRTP+NA
Sbjct: 605 ITERKQAEAELKRHRENLEEQVNARTADLLLAKEAAEAANRAKSTFLANMSHELRTPMNA 664

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + ++         N + +E +  +  +  HLL+L+N+ILDLS+IEA R  L +  +
Sbjct: 665 IIGMTHLLIRG----NENASQREKLAKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPL 720

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTA 384
            + DIV   I M   +   K ++  Q+I P L    +  D   +RQ++LNLL NA+KFTA
Sbjct: 721 RISDIVANAISMAGEKIAAKGLQFNQQISPQLVTTELIGDPLRLRQILLNLLDNALKFTA 780

Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G + ++   T          ISI+D G GI +     +   F Q   +      G GL
Sbjct: 781 Q-GSISLSASVTDETSENLTIRISIEDTGTGIPDEAKDRIFAPFEQVDGSTTRQHGGTGL 839

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           GL I + ++    G+  + S    G          R+     +  H++T  +
Sbjct: 840 GLSIVKQLIHLMHGKIEVSSTPGIGSCFTLT---ARLDKAPSKPRHQATPER 888


>gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 576

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL + + +   HGG   + S    G   +  LP   
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565


>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 6/311 (1%)

Query: 165 LSFFPVVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                V VAL  Q +      +    AG  A  L     ++    +        +  ++ 
Sbjct: 287 AVALGVPVALVHQRLTAQRMTVVGGAAGACAATLGLALLVSRAYGRRRSAEGEVRRAREA 346

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           ++ E           ++ AE  N AKS FLA+MSHELRTPLNAI+GF++V+     GP  
Sbjct: 347 VLIEQRRR---LQSEKELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGP-A 402

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
              + EY+  IH+SG+HLL+L+NE+LD+++IEAGR EL  + I+L D + +C+ +++  A
Sbjct: 403 PPKHAEYLTAIHQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALA 462

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402
             K + +          V AD   MRQ +LNLLSNA+KFT  GG V +         G  
Sbjct: 463 LRKGVTLTGDAIAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTV 522

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I+++D+G G+   E+   +  F Q    +  AE G GLGLP+A+  +  HGG   + S+ 
Sbjct: 523 ITVRDSGIGMNAEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRP 582

Query: 463 REGVEVIAILP 473
             G  V   LP
Sbjct: 583 GAGTTVTIRLP 593


>gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94]
 gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1]
 gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94]
 gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
 gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
          Length = 1035

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 675

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 157/384 (40%), Gaps = 31/384 (8%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-- 168
            +     GL      ++        Y   Y        L  +A+ N  L  A+  S    
Sbjct: 32  CIPVFLRGLGCATAVVLLRDEQDDFYTPSYI-------LPRAAVRNNYLHQAINHSLECL 84

Query: 169 ----PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEK 221
               P+ V L       ++    ++    A  L         L +    +   L+     
Sbjct: 85  INHEPLPVPLRYFESAGLYYYAWAIQDFGALLLGRSAPFREGLLREMEPLVNKLALALTS 144

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                 L++A+    + R  A+  N AKS FLA+MSHE+RTPLNA++  SE++    +  
Sbjct: 145 CRQYQRLKLAQQSMIQARDEAQAANKAKSHFLATMSHEIRTPLNAVINLSELLLETQL-- 202

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  ++    +   G+ LL L+N++LD SRIEAGR EL  ++  L D++     + + 
Sbjct: 203 --DDRQRKLTQGVCEGGRSLLQLVNDVLDFSRIEAGRLELVTTSFRLHDLLDGLASLFEK 260

Query: 342 RAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            A  K +     I P +  V A D   +RQ++ NLL+NA+KFT   G V + V   +   
Sbjct: 261 EAVIKKLHFGLSISPDVPDVIAADPSRLRQILQNLLANAIKFTEK-GSVSIAVRMLAANQ 319

Query: 401 Q---------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           Q            I D G GI+E +   +   F Q    +     G GLGL IA  ++  
Sbjct: 320 QKPPDSVPMMIFHISDTGIGISESDQQRLFQEFSQVDTNLDRRFGGSGLGLAIAARLVML 379

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG+    S    G      LP  
Sbjct: 380 MGGKIGCHSVAGIGSTFWFTLPAK 403


>gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
 gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
          Length = 459

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 138/310 (44%), Gaps = 16/310 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++ Q         I +   +  ++     IT ++ K  VK+            ++++  +
Sbjct: 154 ITVQFGEMRIFFSIIMVIAILLSILLVGIITRYIVKPIVKLTEATQSVAQGQYDIKLNVT 213

Query: 234 LSDETRKRAE----------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             DE  + A+          +    +  F++++SHE+++PL +I GFS+ ++ + +   +
Sbjct: 214 RRDELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---S 270

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  + Y+  I    + +  L  ++L L+ ++     L +S   + + +++ +       
Sbjct: 271 EEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVL--FHTEW 328

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             ++ ++   +    + V+ D++ + QV  NL++N++KFT   G + + V         I
Sbjct: 329 SWRSKDLTIDMSLPPTYVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRV-IEHNTQCRI 387

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI    +P +   F +   A   +E   GLGL I Q I+  HGG+  + S+  
Sbjct: 388 EISDTGIGIPPEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPG 447

Query: 464 EGVEVIAILP 473
           +G     ILP
Sbjct: 448 KGTTFTVILP 457


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 11/278 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +    A L  A  ++   R+ AE  + AKS FLA+MSHE+RTPL  +LG+++++  ++
Sbjct: 484 TARRKAEAALAEAHRIAQVARREAEAGSAAKSEFLATMSHEIRTPLTGVLGYADLLTAQS 543

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                   ++  +G I  +G+ LL +++++LD S+IEAG   L     S   +V E + +
Sbjct: 544 ---DLAPEHRRLVGRIRSAGEALLTIVDDVLDFSKIEAGEITLDPKPFSPAQLVDEALAL 600

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           ++  A  K + +  +IDP++   +  D   +RQV+LNLL+NAVKFT   G V VTV    
Sbjct: 601 VRAAADRKQLALSARIDPAIPERLVGDVGRLRQVLLNLLNNAVKFTRA-GSVTVTVACEP 659

Query: 398 GRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      I + D G GI E +   +   F Q   +I+   +G GLGL I++ ++  
Sbjct: 660 AGPDAQDCPIRICVTDTGIGIPEEKRGRLFQRFSQVDGSIQRHYEGTGLGLAISRRLIEA 719

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             G+  + S+  EG      L   +V     ++  E+ 
Sbjct: 720 MNGRIDVDSRAGEGSTFWFALKLAKVPLEPSKEAEETA 757


>gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1184

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 7/297 (2%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
            L           +   +S++++    A +  L  +      L+   R +AE  N  K  F
Sbjct: 760  LGVISFICAESGHKYDQSSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEF 819

Query: 253  LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            LA +SHELR+PLN ILG+S ++  + + P   +     +  I R+ +    LI ++LD+S
Sbjct: 820  LAVLSHELRSPLNPILGWSRILRTKQLSPTKVDQ---ALETIERNAKLQAQLIEDLLDVS 876

Query: 313  RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
            RI  G+  L+ + ++L   +   +  +QL A+ KNI I   + P   +V  D+  ++QVI
Sbjct: 877  RILQGKMTLNVAPVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQNRLQQVI 936

Query: 373  LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             NLLSNAVKFT  GG++ V +   +     I +KD+G GIA   +P V   F Q   A  
Sbjct: 937  WNLLSNAVKFTPSGGQIEVQLAQVNL-YAQIQVKDSGKGIAREFLPYVFEYFRQEDGATT 995

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE--GVEVIAILPNTRVLNFIPEDNHE 487
                G+GLGL I +     HGG   + S L +  G      LP   V   +P D+ +
Sbjct: 996  RKFGGLGLGLAIVRHFTELHGGTVHVSS-LGQDLGATFTVRLPLNLVEQELPADDEQ 1051


>gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
 gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
          Length = 885

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 10/262 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++    E    AE  N AKS FL+ MSHE+RTPLNA++G + +       P      ++ 
Sbjct: 351 SRQALQEAMLAAENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAAASVSDP---ARVEDC 407

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  S +HLL LIN++LD+S+IE+ +  L      + +IV   +  +  +A+ K+I  
Sbjct: 408 LTKITFSSRHLLMLINDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQAKSKDIVF 467

Query: 351 FQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YIS 404
            + ++     +    D   + Q+++NL SNAVKFT  GG +H+ V       Q       
Sbjct: 468 EETMEGFGKDTVFIGDSLRLNQILMNLSSNAVKFTPPGGSIHLDVSRYKKGNQADVIRFV 527

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G G+ +  +  +   F Q   +I     G GLG+ I ++++   GGQ  + S+   
Sbjct: 528 LKDTGIGMTKEAVGRIFQPFEQADASIAKRYGGTGLGMSITRNLITLMGGQIQVESEPGL 587

Query: 465 GVEVIAILPNTRVLN-FIPEDN 485
           G   I  LP  +     +PE +
Sbjct: 588 GTAFIVDLPFEKGEENQMPEPD 609


>gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
 gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
          Length = 957

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 14/259 (5%)

Query: 226 AELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +L+ A +  +E        R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ E 
Sbjct: 440 HQLQKANARLNEEVLNHAQARLQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDEG 499

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +    N     Y+  I+RSG  LL ++N++LD S+IEAG  E+     +L  +V +   +
Sbjct: 500 L----NSQQSRYVDVINRSGSTLLAILNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQL 555

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396
           L  RA EK +E+   I+  +++ W  D   + QV+ NL+ NA+KFT  G   ++V     
Sbjct: 556 LSGRAAEKQLELSALIESDVTTFWKGDVTRISQVLNNLVGNAIKFTDSGHVDIYVANDPE 615

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   + D+G GI+  E   +  +F Q S  + S   G GLGL I++ I+   GG+ 
Sbjct: 616 RAGHVLFEVSDSGIGISPKEQKNLFDAFTQASGGLSSK-GGTGLGLAISKKIVEAMGGEL 674

Query: 457 LIRSKLREGVEVIAILPNT 475
            + S L +G      +P  
Sbjct: 675 QVDSDLGKGSRFWFSIPLE 693


>gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 701

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 213 KILSCQAEKDDLIAEL-EVAKSLSDET--RKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                  E   +  E+   A    D      +A+  N AK  FLA +SHELRTPLN I+G
Sbjct: 291 SNRRLTTEDLAIAEEIGRRAAQAVDNAWLYHQAQIANRAKDDFLAMLSHELRTPLNPIIG 350

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + E++    + P   E  K+ +  I R+ +   +LI ++LD+SRI  G+  L + ++ L 
Sbjct: 351 WCELLNRGNLSP---EQTKQAVEIIDRNAKLQSHLIEDLLDVSRILQGKLHLQKCSLDLK 407

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            I+   I  +QL A++ ++ I  K+D  +  +  D   + QV+ NLLSNA+KF+     V
Sbjct: 408 TIILSAIETVQLMAKKSSVTIETKLDTDVHPISGDITRLHQVVWNLLSNAIKFSPSHSTV 467

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V++         I IKD G GI    +P +   F Q   +      G+GLGL I ++++
Sbjct: 468 TVSLSAV-DGMALIEIKDQGKGIEPEFLPYIFDRFSQSESSKNRDYGGLGLGLTIVRNLV 526

Query: 450 ANHGGQFLIRS-KLREGVEVIAILP-----NTRVLNFIPE 483
             H G+    S  + +G       P        V +  P+
Sbjct: 527 EMHDGKIKADSLGINQGATFTVAFPILYEDKKTVTDEEPK 566


>gi|86146520|ref|ZP_01064843.1| sensor histidine kinase [Vibrio sp. MED222]
 gi|85835783|gb|EAQ53918.1| sensor histidine kinase [Vibrio sp. MED222]
          Length = 818

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 13/277 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI          +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++    +
Sbjct: 314 EIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 373

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   ++++  ++ SG H++ L+NEILD S+IE GR +L E+   L  I+     + 
Sbjct: 374 ST----EQEKHLKSLYDSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 429

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + EK ++     + PS    ++D+  +RQ++ NLL+NAVKFT+  G V V +     
Sbjct: 430 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEVVE 488

Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I ++D G GI++     +   F Q   +      G GLGL I + I     G 
Sbjct: 489 GSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGS 548

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             + S+   G      L   ++    P +  ES  +K
Sbjct: 549 ISVTSEEGIGTSFDVRL---KIKPCQPGEI-ESLPHK 581


>gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 883

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 125/236 (52%), Gaps = 2/236 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R E  +  K+  +A+ SHELRTP+ +I GF +++ L T G ++  T +E +  I  +   
Sbjct: 647 REEIADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVS-ATQREPLRVIKNNVVR 705

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ LI+E+LD+SR+EAG   L    + L +++R+ I +L  + +E+ IE+       L  
Sbjct: 706 LVVLIDELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPH 765

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + Q+ +NL+ NA K+T  GG V + +         + ++D G GI+E     +
Sbjct: 766 VVADRQRIEQIAVNLIGNACKYTPRGGTVWIGM-HNGNGELRVDVRDTGVGISEEAKSHI 824

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            T F +    ++    G GLGL I Q ++  HGG+    S++  G     +LP   
Sbjct: 825 FTPFYRADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLPIKP 880


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  +LV     G       L E        L +    T+L  + ++
Sbjct: 1160 FRPGEALVGTAAKEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELA 1219

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITYH 206
            + + F      FL+    ++A S   I      ++ L         L             
Sbjct: 1220 SFTPFTQIQKDFLNQIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSDELENRQEA 1279

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
            L  SN ++            ++EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1280 LQASNAELEEKAELLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1339

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L      E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1340 LRTPLNSLLILAKLLADNAESNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1398

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1399 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1458

Query: 379  AVKFT----------AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIP 418
            AVKFT            G  V V +                    S+ D G GIA  ++ 
Sbjct: 1459 AVKFTDSGAVELVIRPAGADVPVAIKEQLLEAGSLRDADADMIAFSVTDTGIGIAASKMR 1518

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1519 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPL 1574


>gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
 gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
          Length = 650

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 5/249 (2%)

Query: 242 AEE-ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           AE      +  F A++SHEL+TPL  I GF+E+I        + E  K +   IH+  + 
Sbjct: 339 AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDIKNFSNKIHQESRR 396

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +L+LI+ I+ LS+IE     +S   +S+  +++    ++  +A +K+++I   I+P    
Sbjct: 397 MLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEP--VY 454

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ +   + ++ +NLL NAVK+   GG + V +     +   I+I D G GI E +   V
Sbjct: 455 MYGNAALLSELFMNLLDNAVKYNVEGGNITVHIKRVKEKLMKITISDTGVGIPEEKQNRV 514

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +   A  G GLGL I + I+  H G+  I S   +G  V A LP       
Sbjct: 515 FERFFRVEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVTAELPCLSDEEI 574

Query: 481 IPEDNHEST 489
           + E+  E T
Sbjct: 575 LRENATEIT 583


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/403 (25%), Positives = 165/403 (40%), Gaps = 37/403 (9%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV  +  G       L E        L +     LL  + +++   F      FL+
Sbjct: 1176 KRPILVENVPPGYLKIASGLGEAAPAHVIVLPVLFEGQLLGVIELASFQPFAQIQKDFLN 1235

Query: 167  FFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                ++  S   I      ++ L     +          +              + + D 
Sbjct: 1236 QIAEMIGTSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKSDR 1295

Query: 224  LIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L  +    EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1296 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1355

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1356 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1414

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                  +    EK ++   ++ P L  ++  DE+ + QV+ NLLSNAVKFT  GG V + 
Sbjct: 1415 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFT-DGGAVELV 1473

Query: 393  VGWT---------------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +                               S+ D G GIA  ++  +  +F Q     
Sbjct: 1474 IRPAGVDVPNAIREQLLEHGALRDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTT 1533

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                 G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1534 SRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1576


>gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 9/276 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   L +S     +        I+E +       + +  AE  N AK RFLA +SHEL
Sbjct: 305 VAMRSSLIRSANGEPTAICGIARDISEQKSRHEELMKAKLAAESANSAKDRFLAMVSHEL 364

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN I+G++E++  +   P+     + ++  I  S + + +L+++ILD S IE+GR +
Sbjct: 365 RTPLNPIVGYAEILAAKIEDPMA----QRFLKIIKESAKGMASLVSDILDYSMIESGRID 420

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           +      + D++      ++  A E+  +I   +D     V AD++ + QV+ NL++NA 
Sbjct: 421 IEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLVANAC 480

Query: 381 KFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G++ ++   +          I + D G GI E E+ T+   F Q     K+  +
Sbjct: 481 KFT-QNGKILISSSASQTSKEAYSVRIEVSDTGIGIPESELETIFEPFEQLGSVHKAETR 539

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GVGLGL I + ++   GG   + S+L  G      L
Sbjct: 540 GVGLGLAICRQLVGALGGTISVSSQLGSGTIFTVDL 575


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 168/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +     +L  + +++ + F      FL+
Sbjct: 1206 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVIELASFTPFTQIQKDFLN 1265

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDL 224
                ++A S   I      ++ L                   +  +     +   EK +L
Sbjct: 1266 QIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKAEL 1325

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A+     EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1326 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1385

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +       L      E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1386 LADNADSNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1444

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT--------- 383
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT         
Sbjct: 1445 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVI 1504

Query: 384  -AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
               G  V V +                    S+ D G GIA  ++  +  +F Q      
Sbjct: 1505 RPAGRDVPVAIREQLLEAGSLRDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 1564

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1565 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1606


>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 885

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 125/251 (49%), Gaps = 8/251 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +   ++AE+ N AKS FL+ MSHE+RTP+N I+G   +I ++ +G  ++   ++ I
Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ S +HLL LINE+LD+S+IE+GR E+          +     ++  +A++K +   
Sbjct: 400 RKINLSSRHLLTLINEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
                 +   ++ D   + Q+++NLLSNA+KFT  GG + + +               + 
Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKLDEDSTTVWLKFEVS 519

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E     +   F Q    I     G GLGL I++       G+  + S++ +G 
Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579

Query: 467 EVIAILPNTRV 477
                +P  RV
Sbjct: 580 TFTLTMPFGRV 590


>gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 609

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  + +F+A++SHELRTPL  +  + E +        + +    +I  +    + ++
Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALGDGAW--QDKDIAPRFIQVVQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ I+      + I   +L  +  NI   +KI      + 
Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG +   V   +     +S+ D G GI + ++  +  
Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRELAD-EIIVSVSDEGVGIPKADLAKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG     SK  +G  +   LP  R
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGTIWAESKEHKGTTIYFTLPLER 600


>gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
 gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
          Length = 1045

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 9/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 662 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADTEEQEEKE 721

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI  I  +   LL L+ +IL+LS+IE+G  E   S + L  + +E     QLR +
Sbjct: 722 ----EYINIIENNNTLLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQK 777

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            + + I    +    +V  +   + QV+ N+L+NA+KFT   G V            Y  
Sbjct: 778 NEAVPIRYIPEMPDCTVNIERNRLTQVMTNMLNNAMKFTYS-GSVTFGYRLKDTDSLYFY 836

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +  TV   F +      S  QG GLGL I QS++ N GG   + S+  +
Sbjct: 837 VTDTGCGIEEDKKDTVFGRFVKLD----SFSQGTGLGLSICQSVVENLGGSIGVESEPGK 892

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP   V      +  E
Sbjct: 893 GSTFWFTLPYHPVELKSTREQKE 915


>gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRGSIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLASMSHE+RTPLN ++GF +++    +    ++    ++     S   LL+LIN+IL
Sbjct: 595 STFLASMSHEIRTPLNGVIGFLDLLHTTKL----DDQQGRFVELAKSSASSLLHLINDIL 650

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           DLS+IEAG  EL ++   L D++     M   + +   +E+   +   +      D + +
Sbjct: 651 DLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERI 710

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEIPTV 420
           RQV++NL +NAVKFT  GG V++ V                  S++D G G+   ++  +
Sbjct: 711 RQVLVNLFANAVKFTETGG-VYLRVERERSVASSHDAIARIRFSVEDTGIGVPRSKMQRL 769

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             +F Q   +   +  G GLGL I + ++   GG+  + S++ +G      LP   +   
Sbjct: 770 FKAFSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVESEVGKGSTFWFTLPLQAIERS 829

Query: 481 I 481
            
Sbjct: 830 T 830


>gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 409

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 2/233 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTPL+ I G++E +       +       ++  I R    L  
Sbjct: 172 RLEAVRKEFVANVSHELRTPLSVIKGYAETLIDGGPD-MPPAQRDRFLHIIRRHTDRLNT 230

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L LSR+E+    L      L  +V+  +   + R       +   +  +   +  
Sbjct: 231 LLEDLLTLSRLESPNTGLRREPGDLDRLVKTLLDEYRTRPAAARHTLQLTLGAAPGPLNF 290

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NLL NA+K+T  G R+ + +    G    I + DNGPGI   ++P +   
Sbjct: 291 DALKLTQVFHNLLDNALKYTPPGSRIDIAIRP-KGSEIEICVSDNGPGIPVADLPHIFER 349

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +          G GLGL I + I+  HGG+  + S+   G      LP   
Sbjct: 350 FYRVDKGRSRETGGTGLGLSIVKHIVQLHGGRVWVESEPGRGASFHFTLPAAP 402


>gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8]
 gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
 gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8]
          Length = 1155

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 8/314 (2%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGML--ATALSFFTYITYHLFKS----NVKILSCQAEK 221
             P   A   Q + + +V  + +  ML     + F  +      +      V +L   ++ 
Sbjct: 836  LPPDAAGLRQRLEAGNVQSLLVLPMLNDQDLIGFVGFDAVRQQRDWDADTVMLLRVLSDA 895

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                 + + A+      ++ AE+ N  KS FLA+MSHE+RTPL +I+GF+E I  E    
Sbjct: 896  ISNALQRKTAEKEMLAAKEEAEDANRMKSVFLANMSHEIRTPLTSIIGFAEAIGDELGDE 955

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  + +   I +SG  LL  ++ +L+LS++EAG  +L+   ++L     E       
Sbjct: 956  TAGPVLR-FAQLIEKSGNRLLETLDGVLNLSKLEAGEMDLTIEPVNLAVQTAETADQFAP 1014

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +AQ   I +   +D +     ADE  +  V+ NL+SNA+K+T  GG V V V   +G   
Sbjct: 1015 QAQASGISLHTDLDDAPVWARADEGAVHIVLRNLISNAIKYTNEGGEVEVQV-RDAGTAA 1073

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++I+D G G+   ++  +  +F Q S  +    +G GLGL + +  + +  G   + ++
Sbjct: 1074 VMAIEDTGIGMNPEQVTDLFEAFRQASEGLGREYEGTGLGLAVTKQAVDHMNGSIDVETE 1133

Query: 462  LREGVEVIAILPNT 475
               G   +  LP  
Sbjct: 1134 KGVGTRFVVRLPTA 1147


>gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 576

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGNM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFARTG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VIEGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL + + +   HGG   + S    G   +  LP   
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565


>gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33]
 gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
 gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
          Length = 1035

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella
            melitensis biovar Abortus 2308]
 gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
 gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName:
            Full=PleC-divJ homolog sensor
 gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS
 gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A,
            N-terminal:Bacterial sensor protein, C-terminal:Histidine
            kinase [Brucella melitensis biovar Abortus 2308]
 gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
          Length = 1035

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +     +L  + +++ + F      FL+
Sbjct: 1175 KRTILVENAPTGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVVELASFTPFTAIQKDFLN 1234

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
                ++A S   I      +  L                     K+     +   EK +L
Sbjct: 1235 QIAEMIATSVNTISVNTKTERLLKQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1294

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A      EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1295 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1354

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1355 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1413

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G   + +
Sbjct: 1414 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1473

Query: 392  TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                           S+ D G GIA  ++  +  +F Q      
Sbjct: 1474 RPARDDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1533

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1534 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1575


>gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
 gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
          Length = 1500

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +  +   +A+  +++A     K   +    +AEE N AKS FL++MSH++RTP+NAI+G 
Sbjct: 1076 HQTVCLVRADVTEMLAAERRTKKTLENALIQAEEANRAKSDFLSAMSHDIRTPMNAIMGM 1135

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +  +    +G  +++   + +  I  S +HLL+LIN++LD+S+IE  +  L+   + + +
Sbjct: 1136 T-ALATAHLG--DSQRVADCLKKITYSSKHLLSLINDVLDMSKIERSQITLNRVRLRMPE 1192

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ +   ++  +A+ K I++    +    +V + D   + Q+++N+LSNAVKFT  GG +
Sbjct: 1193 VIEQLAAIMGPQARIKAIQLNISANQIEHTVFYGDALRINQILINILSNAVKFTPEGGTI 1252

Query: 390  HVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
               V    G  Q       +I+D G GI    +  +   F +   +     +G GLGL I
Sbjct: 1253 DFIVEEIPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFAR--SSQVGQIEGTGLGLSI 1310

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             + ++    G   + S++ +G   +  L     LN  P+
Sbjct: 1311 TRGLIELMNGSLQVESQVGQGSTFVIELACEPELNGNPD 1349


>gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 1000

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 14/407 (3%)

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIG--EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
           W     ++ A      +                         +   +   ++TL      
Sbjct: 603 WGGAPASLLALRRLPEEDPARHLRAAELERARQEARLRESEAVLDAVTDGVVTL----DE 658

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALSTQAIMSMHVLDISLAG 191
               + + K A  L       +S   L           +  AL           +++  G
Sbjct: 659 RGRVIALNKGAAALFGHEPREVSGEDLTVLFAQDGRPAIRAALERARAGEPASTEVAAEG 718

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                      +     +    +L         ++     ++     ++ AE  +  KS 
Sbjct: 719 GEPILALTLAPLAQEEPRRFSVLLRD-------VSAARRTEAELLRAKRAAEAASSQKSD 771

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHE+RTPLNAILGF+EV+  E  GP+ NE Y++Y+ DI  SG+H+++L+ ++LDL
Sbjct: 772 FLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRSSGEHVVSLVTDLLDL 831

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           ++IEAG  +L  + + L D+V   + ++Q +A  + + +       L  V  D++ +RQ 
Sbjct: 832 AKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVRTSFANGLRPVLGDQRSLRQA 891

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            LNL++NA+KFT  GG+V V+   T   G  + ++D G G+   E+ T L  F Q + A 
Sbjct: 892 ALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEVETALQPFRQVATAQ 951

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
               +G GLGLP+ ++++  + G   + S+  EG  V  + P  RVL
Sbjct: 952 NRRGRGTGLGLPLTKALVEANRGTLRVSSRKHEGTLVEVLFPPARVL 998


>gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 919

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 153/360 (42%), Gaps = 14/360 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL--SNFMLPYAVFLSFFPVVVALS 175
           G+    + +     W           +LL+  S+ A+      +  A  ++    +    
Sbjct: 151 GIVVGTIAIHADIAWLRGLYLHNLLISLLVGASVLAVTVLVAWVRIARIINPLRALAGEF 210

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                   +                        + + +    Q  ++ L   + +  +  
Sbjct: 211 ADIGERSDLSKRLRVVSNDEVGVLSGAFNDMFARIDERDRLLQRHRETLEDTVTLRTAEM 270

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +  AE  N AKS FLA++SHE+RTP+N +L  +E++            Y  +   I 
Sbjct: 271 RSAKDEAERANAAKSEFLATVSHEIRTPMNGMLVMAEMLS----AAPIPSRYLRHAEIIL 326

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RSG+ LLN++N+ILD+S+IEAGR +L E  +S+  +V +   +   +A+EK++ I   ID
Sbjct: 327 RSGRGLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREKSLSIATMID 386

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDN 408
             +   V  D   + QV+ NL++NA+KFT  GG V + V   +            +I+D 
Sbjct: 387 VDVPAEVIGDPVRISQVLTNLVNNALKFTETGG-VTIAVECVAAEDAGGPPMLGFTIRDT 445

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++  +   F Q    I     G GLGL I++ ++   GG   + S+   G   
Sbjct: 446 GIGIPADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRVTSEEGVGSCF 505


>gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 1170

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L + +  +   +   D    EL +A+          +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G   S++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                  G GLGL I++ + A  GG   + S   +G     +LP   V         E
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731


>gi|332534411|ref|ZP_08410251.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036145|gb|EGI72620.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 786

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 10/272 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +  ++        + +++A+E +  K +FLA+MSHE+RTP+N I G    +    + 
Sbjct: 391 NIQIREQVAKQTHTLRKEKQKADEASHIKGQFLANMSHEVRTPINGIKG----LHYLALQ 446

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + +  + YI     +   LL ++N++LD S++EAG+ +L +  I++  +  E + +LQ
Sbjct: 447 QNDWQQARSYIEQADGALGVLLRVLNDVLDFSKMEAGKLDLMQEPINVASLADEMLNLLQ 506

Query: 341 LRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A  K+I++    D  S   +  D   ++QV+LNLL+NAVKFT   G + + + W S +
Sbjct: 507 FEADIKSIKLSLDFDKTSNLVINTDPIRLKQVLLNLLNNAVKFTGE-GEITLKI-WQSKK 564

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y SI D G GI+      +   F Q   +      G GLGL I + ++   GG   + 
Sbjct: 565 MTYFSINDTGIGISSEAQKQLFKPFAQADSSTSRQYGGTGLGLSICRKLVELMGGAIDLV 624

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           S   +G      LP    ++ +P+      QY
Sbjct: 625 SYEGKGSTFTFSLPL---ISPLPKAEQIQQQY 653


>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 571

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F+ + SHEL+TP+ A+ GFSE +    M   + E  K+++  +     
Sbjct: 341 RRLE---KVRTDFVTNASHELKTPVTALKGFSETLLDGAM--EDKEVLKQFLEIMLAESS 395

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N+IL+LS++E  +  ++   ++L + V     +++  A EK +++    +    
Sbjct: 396 RLDFLVNDILELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLI-EEDTL 454

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   ++Q++ NL++NAV +T   G V VT+   + +   + + DNG GI E E   
Sbjct: 455 FITVDSSRLKQILANLINNAVVYTQDSGEVTVTIRKENNQAVIL-VSDNGIGIPEDEQDR 513

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   A      G GLGL I + ++ N  G   + SKL  G   I  LP
Sbjct: 514 IFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGSIAVESKLGLGTTFIVRLP 567


>gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
 gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
          Length = 1036

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 770  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 829

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 830  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 889

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 890  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 949

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 950  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1009

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1010 AQFAIDSNPGQGTVVEIVFPPTRVL 1034


>gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
 gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
          Length = 1035

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 612

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        N      ++G I    + ++ +IN+
Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364
           +L+LSR++ G  ++    ++L D +   +    +  +   ++   I +        V  D
Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QVI N+++NA+K++  GG + + +  T      +SI D G GI   ++  +   F
Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   A    + G GLGL I++ I+  H G+    S    G      +P  ++   
Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605


>gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 543

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 150/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 248 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 303

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 304 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 363

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 364 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 423

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI   +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 424 YVTVK-DFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 482

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P       + ++N+
Sbjct: 483 NMHEGTIDIQSEIGKGSEFIINIPVKLEKEDLEKENN 519


>gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 1088

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 180/466 (38%), Gaps = 24/466 (5%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           LG           E++   ++        L +  +    +      +     +++  L +
Sbjct: 198 LGTADQLIASRSSELVQDFIQ-----FGALGMMAVYHLFLFALRRNDRTTLNFAIFCLCM 252

Query: 83  YAANLSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
               L +  +           E++    +L V      L   +  L      +       
Sbjct: 253 AVRALLVNSRYILDVFPGMSFELFAKLSYLTVYAGFYFLVAYVHELFPTLFSSFVRKGYG 312

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               LLIA S+  L+     + +         A+   A +++       +G L     F 
Sbjct: 313 LFTLLLIA-SVLVLNVQGYDHLLIPFEILTAAAVLYSAFIAVRAAKQRQSGALLLIGGFM 371

Query: 201 TYITYHLFKSNVK-------------ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
                 +  + ++             +L    +   L  +   A    ++  +R    + 
Sbjct: 372 VIFATGVSDAFMRKAGHFPALLSTGVLLFAFLQSLLLSMKFSKAFRQVEQLSERLLSLDK 431

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K  FLA  SHELRTPL+ I+G +E +     G   +     ++  I  SGQ L +L+N+
Sbjct: 432 LKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENGHLQLIRSSGQRLAHLVND 491

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILD S++     +L    I++  IV   + +L+  A+ K + +  ++ P+L  V ADE  
Sbjct: 492 ILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLLLINEVPPAL-QVRADENR 550

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + Q++ NL+ NA KFT   G V ++    + +   I+IKD G GIA+  +  +  SF Q 
Sbjct: 551 LHQMLHNLVGNATKFTLQ-GHVVISARKQARQ-ITINIKDTGIGIAQESLGVIFESFEQL 608

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                S   G G+GL I + ++  HGG+    S    G      LP
Sbjct: 609 DPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFSFTLP 654


>gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1364

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 676 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 795 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            S    G E   ++   +      + +  S
Sbjct: 855 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 884


>gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
 gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
          Length = 468

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 12/328 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----ALSFFTYITYH 206
           +  +    +P A           L   A M   V+ I L  ML       L        H
Sbjct: 145 LQGIIYLYVPLAKISEITQDFAYLWFAAAMIFTVISIILGTMLVKKLTKPLLDMKDAADH 204

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K    I      KD++         +S   +K  E+    K  FLA++SHELRTP++ 
Sbjct: 205 VSKGYYDIHLNIDSKDEIGQLANAFNHMSSSIQKEDEK----KKDFLANVSHELRTPISY 260

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           + G+SE +  E     + E  ++Y+  I R  + +  L+ ++LDLS++E+  Y+L +  +
Sbjct: 261 VKGYSEALISEM--AESEEDRQKYLQLILRESKRMERLVGDLLDLSKLESDEYKLEKMPL 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L  ++ + I   +   +EKN+++  ++DP +  +  DE  + Q+I N++ N++++TA  
Sbjct: 319 PLGQLIEDAIEKYKPILREKNLDLQYRLDPEVI-INGDEGRIEQIIQNIMDNSIRYTAE- 376

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           GR+ + +         I I+D G GI+E  +  +   F + +     ++ G GLGL IA+
Sbjct: 377 GRISIRLSQEKEDKCVIEIEDTGIGISEEHLSKIKQRFYRVNKGRTRSDGGTGLGLAIAE 436

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  H G+  + S+L +G  V  +LP 
Sbjct: 437 KLVKLHQGELTVLSELNKGTTVRIVLPL 464


>gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
 gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
          Length = 591

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K +++ 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + V  T   G    ++D+G G
Sbjct: 466 VDFQSPIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           I E +IP +   F +   A    ++ G GLGL IA++I+  H G+  + S + EG     
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSV 584

Query: 471 ILPNT 475
            LPN 
Sbjct: 585 YLPNR 589


>gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1229

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
           +A+      +     +     +    +   +              +  +      ++   
Sbjct: 433 RALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTGINRDVTLEREREAWLS 492

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + +  A+  N AKS FLA+MSHE+RTP+NAILG  ++I+   +    N    +Y      
Sbjct: 493 QAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGL----NARQADYADKASS 548

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + + LL ++N+ILD SR+E G+  L+    S+  ++R+  +++     +K++E+   IDP
Sbjct: 549 AARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEVLFDIDP 608

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
            L   + AD   ++Q+++NL  NA+KFT   G V +                S++D G G
Sbjct: 609 ELPDWISADSLRLQQILINLSGNAIKFTER-GEVVIAARLARRDEAGLRIAFSVRDTGIG 667

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA   +  +   F Q   +      G GLGL I+Q ++A  GGQ  + S+  +G      
Sbjct: 668 IAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTVESEEGKGSVFRFE 727

Query: 472 LPNTRVLNFIPEDN 485
           +         P  +
Sbjct: 728 VDCAAAEAPKPAVD 741


>gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 220]
          Length = 597

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 340 LLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 397

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 398 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 457

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +       
Sbjct: 458 LAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 517

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
           R    I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 518 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 577

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 578 SVESELGKGSDFIITLPLYK 597


>gi|253578668|ref|ZP_04855939.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849611|gb|EES77570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 640

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 128/269 (47%), Gaps = 11/269 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           AE +  K L     + A+  N AKS FL S+SH++RTP+NAI+GF+ +     +      
Sbjct: 240 AEEQKQKQLLMTAAEEADAANKAKSAFLLSISHDIRTPMNAIIGFTNI----ALHQNTVS 295

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + +  + +S  HLL+L+N++LD +RIE+G+  +S   + +  +      ++      
Sbjct: 296 DIHDSLEKVQKSSNHLLSLLNDVLDFTRIESGKVTISPEPMDITQLTDNVQAIMNGLLYN 355

Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQY 402
           ++++     +      V AD   +R+V++NLL NAVKFT  GG++ + +     +     
Sbjct: 356 RDLKFEVHREISKNPYVLADVVRIREVLVNLLGNAVKFTKDGGKITLDISSYPGADEKHI 415

Query: 403 IS---IKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLI 458
           I+   ++DNG G++E     +   F Q   A      +G GLG+ I +  +   GG   +
Sbjct: 416 ITRYVVRDNGIGMSEEFQKKLFDPFSQEDDANARTQYKGTGLGMAITKKYVDMMGGSIAV 475

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            SK   G      +P       I  +  +
Sbjct: 476 ESKKGVGSTFTVEIPLELTEQVIQSEQKQ 504


>gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 730

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 12/286 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLS----DETRK---RAEEENLAKSRFLASMSHELRT 262
           S  ++++   E +    +LE +        ++ +K    A+  N AKS FL+++SHELRT
Sbjct: 318 SENRLIAAFNELETSKEKLEQSNLEIRKGIEKAKKLAVVAQSSNKAKSYFLSNISHELRT 377

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN+I+  ++ +   T G L N    E +  +  S +HL +LIN+ILDLS+IE G+  L 
Sbjct: 378 PLNSIVSLTQALLEGTFGDL-NAKQHENLEIVSESSKHLQSLINDILDLSKIELGKMTLK 436

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
            +   + DI R  I M++  A  KN+    +I+  L ++  D K +RQ++LNLL NAVKF
Sbjct: 437 FAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEVDAKRLRQILLNLLVNAVKF 496

Query: 383 TAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T     V + +   S       ++ D+G GI + +   + + F Q   ++    +G GLG
Sbjct: 497 TKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFSPFTQLDDSLSRHYEGTGLG 556

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           L IA   +  HGG   + S    G      LP  +  +   E+  E
Sbjct: 557 LAIASKFVELHGGGLRVASTPDLGSTFTISLPIEQTKD---EEEPE 599


>gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
          Length = 1045

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 128/262 (48%), Gaps = 10/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EYI  I  +   LL LI++ILDLS+IEAG  E S   I L DI+ E   + + R +
Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTE 777

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              I++  +       +  ++  + QV+ NLL+NA KFT+  G +         +  Y  
Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI   ++ ++   F +      S  QG GLGL I Q+I+ + GG+  + S+  +
Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891

Query: 465 GVEVIAILPNTRVLNFIPEDNH 486
           G      +P          +  
Sbjct: 892 GSTFWFTIPYQPAAAENKREEE 913


>gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 539

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 12/271 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +  L   +    ++RK+AE  N AKS FLA++SHE+RTPLN ILG ++++    + P 
Sbjct: 123 ADVTALRERERELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQLMASGDLTPG 182

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K+ I  I  SG+ L+ L+N++LDLS+IEAGR+++S     L  ++R    +   R
Sbjct: 183 ----QKDQIETILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRRMEKLWAPR 238

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A EK + +   I+ ++  +   D   +RQ + NL+SNA+KFT   G V V          
Sbjct: 239 ASEKGLVLTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFTER-GSVRVAARCVPAGEG 297

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + I D G G++   +  +   F Q   +      G GLGL I++ +    GG  +
Sbjct: 298 EFDVLVEISDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQLMGGDVV 357

Query: 458 IRSKLREGVEVIAILPNT--RVLNFIPEDNH 486
             S+   G            R ++  P++  
Sbjct: 358 AESEEGRGSLFTLTFRAAEGRRVSEAPQNAD 388


>gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1170

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L + +  +   +   D    EL +A+          +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G   S++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                  G GLGL I++ + A  GG   + S   +G     +LP   V         E
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731


>gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1195

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 7/260 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E      E+E A+   +E  ++    +  KS FLA+MSHELRTPLN++L  ++++   +
Sbjct: 498 SEVARKNQEIEKARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNS 557

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L+N+   EY   I+ +G  LL LIN+ILDL++IE+G   +    I   D+       
Sbjct: 558 SGNLSNKQV-EYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERT 616

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
            +  AQ+K +    ++D  L  ++++D K ++Q++ NLL+NA+KFT  GG V + +G   
Sbjct: 617 FRQVAQDKGLSFSIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGG-VTLRIGLDQ 675

Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T+      +I D G GI + +   +  +F Q          G GLGL I++ +    G
Sbjct: 676 INTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLG 735

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G+  + S+  +G      LP
Sbjct: 736 GRLGLVSQPGQGSIFTLYLP 755


>gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1093

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+  +  ++   E ++ A++ N AK+RFLA MSHE+RTPLN++LG + ++    +   
Sbjct: 402 RDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRLLMDTPLTA- 460

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++    I  SG+ LL L+N +LDLS+IE+GR EL  +++S   +V   + M+   
Sbjct: 461 ---EQRDLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVESVLDMIAAT 517

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV--------- 391
           A+ K +E+  ++   +   V  D   +RQV++NL SNAVKFTA G   + V         
Sbjct: 518 AERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVITLGQCPLR 577

Query: 392 ----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +V    G     +++D G GIA  ++  +  ++ Q   +I     G GLGL I++ 
Sbjct: 578 PGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTGLGLAISKK 637

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++   GG+  + S+   G      +
Sbjct: 638 LVELMGGEIEVESEPGRGSIFRFTI 662


>gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 1038

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 772  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 831

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 832  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 891

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 892  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 951

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 952  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1011

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1012 AQFAIDSNPGQGTVVEIVFPPTRVL 1036


>gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1]
 gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1]
 gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
 gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
          Length = 1035

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|88707340|gb|ABD49452.1| two-component-like hybrid sensor histidine kinase 1 [Cryptococcus
            neoformans var. grubii]
          Length = 1383

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   + + R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 797  SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 856

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        +E +  +      LL +I++ILD+S+IEAGR  + +   SL   V   
Sbjct: 857  ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 912

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L ++A +  +++   +DP++   +  D   +RQVI NL+ NAVKFT   G+V ++  
Sbjct: 913  LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 971

Query: 395  WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                            + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 972  VKRYVAVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1031

Query: 449  MANHGGQFLIRSKLREGVEVIAI 471
            +    G   + S+  +G      
Sbjct: 1032 VNLMSGDLWVESEYGQGSRFYFT 1054


>gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 653

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 177/439 (40%), Gaps = 7/439 (1%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW-SLITLAVYAANLSLGKKVMNSDI 98
           L +     ++  L    L+ A                      +     +L  ++     
Sbjct: 185 LLIAGRRGLAAALAGSTLVFAACLLAVGPPVFTAGLDPASAALILCYGATLVLRLARRST 244

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
                       + G         L   +           +  +    I      ++   
Sbjct: 245 NSNAAATTSAAAVAGPSIDDAASLLDAALISLDARGMVTAVSPATLTGIGQERDTVTGRS 304

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   V +    V   L   A        ++ A  L      +      L           
Sbjct: 305 LVDLVHVGDRVVF--LQALADARRTAQVVTAAARLRRGDGTYHPAGLRLRGCAETGAVHV 362

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           A      A  E A          A + + AKS+FLA++SHELRTPLNAI+GFS++++ E 
Sbjct: 363 AVAVAANAAGESA--DLQTALDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEF 420

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G   ++  KEY+G I +SGQHLL+++N +LD+S+IEAGRYEL   A  L + +   + +
Sbjct: 421 FGGFESDRQKEYVGLIRQSGQHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDV 480

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++  A+ K++ +  +       + AD +   Q++LNLLSNA+KFT + G V +      G
Sbjct: 481 VREEARRKDLRLDVRPGCRDEEITADRRACHQILLNLLSNALKFTEV-GVVTLESRRV-G 538

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G GIAE +I  +   F Q S       QG GLGL + + +   HGG   I
Sbjct: 539 AMVEFSVSDTGIGIAESDIERLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTI 598

Query: 459 RSKLREGVEVIAILPNTRV 477
           RS+   G  V   LP   V
Sbjct: 599 RSQPGVGTMVTVRLPAVYV 617


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 163/376 (43%), Gaps = 33/376 (8%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFM---------LPYAVFLSFFPVVVALSTQAIM 180
           G  TP  L +       +AL++  +  F          L  A       V  AL    + 
Sbjct: 311 GQATPAELVMMPIVLNGVALAVVEMGWFRTVAPHEVDFLVRAGEQLAQAVRGALDRSRLE 370

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---- 236
           S+       A  L             L + +  +   Q       AELE + +  +    
Sbjct: 371 SLLDETQRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELEHSNAQLEAQTE 430

Query: 237 ----------------ETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                           E + R   + +  KS FLA+MSHELRTPLN+ L  ++++     
Sbjct: 431 QLQYQKQRLLTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQ 490

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L  E  + Y   IH +G  LLNLIN+ILDLS+IEAG+  +    +++  +V   +  L
Sbjct: 491 QNLTAEQVR-YAQTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVAKVVAGVMEPL 549

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           + +AQ+K ++    ++P + + + +D + + Q++ NLLSNA+KFTA  G V + V     
Sbjct: 550 RAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTAR-GEVTLRVFAGDN 608

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GIA  +   +  +F Q   +      G GLGL I++ +    GG   +
Sbjct: 609 DTLCFAVRDTGIGIAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAV 668

Query: 459 RSKLREGVEVIAILPN 474
           +S   EG      LP 
Sbjct: 669 QSAPGEGSVFTLTLPV 684


>gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Verrucomicrobium spinosum DSM 4136]
          Length = 2178

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 153/354 (43%), Gaps = 24/354 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             + +++L  F   +  FL      + +    I +  +    L        +        L
Sbjct: 1396 VIELASLHRFTAAHLNFLEQLTQSIGVVLNTIEA-TMRTEGLLQQSQQLTAELQSGQNEL 1454

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLA-----KSRFLASMSHEL 260
             ++N ++     E  +  AE+E      ++ R+  E     LA     KS FLA+MSHEL
Sbjct: 1455 QQTNEELEQKAQELAEQNAEVERKNREIEQARRALEDKAAELALTSKYKSEFLANMSHEL 1514

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN+IL   + +   + G L+     ++  +IH +G  LLNLIN+ILDLS+IE+G   
Sbjct: 1515 RTPLNSILILGQQLAENSAGNLST-RQVDFARNIHSAGSDLLNLINDILDLSKIESGTVS 1573

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
            +    I+   +        +  A+ KN+      DP L      D K ++Q++ NLLSNA
Sbjct: 1574 VEAEEITFATLRDSVERNFRHIAENKNLPFKLDFDPGLPRHFSTDPKRLQQIVKNLLSNA 1633

Query: 380  VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426
             KFT+  G V++ VG  S                  I+IKD G GI   +   +  +F Q
Sbjct: 1634 FKFTSQ-GSVNLKVGLASEGWSPDHPVLSRVPSVMSIAIKDTGIGIVPEKQRLIFEAFQQ 1692

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                      G GLGL I++ +    GG+  + S   EG      LP   V   
Sbjct: 1693 ADAGTSRKYGGTGLGLAISRELATLLGGEIRLHSVAGEGSTFTLYLPLDYVGPA 1746


>gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 1040

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 13/262 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + RAEE N  KS FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 656 ITERKKMEDDLISAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAS----IEEE 711

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA- 343
           +  +EY+  I  +   LL LI++ILDLS+IEAG  E   S   L  I+ E    L+L+  
Sbjct: 712 KEKQEYVSIIENNNALLLQLISDILDLSKIEAGTMEFIYSDFELNKIMAELESSLRLKLP 771

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-Y 402
             KNI +  +    +  + A+   + Q+I+NL++NA+KFT  G    +  G+       Y
Sbjct: 772 PNKNISLTFEPQLPVCYIHAEHNRLSQIIINLVTNAIKFTDAGS---IRFGYEKRNKILY 828

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI + +   +   F +      +  QG GLGL I ++++ + GG+  + S +
Sbjct: 829 FYVSDTGCGIPKDKKEEIFGRFVKL----NNFAQGTGLGLSICRTLVQHMGGEIGLDSAI 884

Query: 463 REGVEVIAILPNTRVLNFIPED 484
            +G      LP     N   ++
Sbjct: 885 GKGSTFWFTLPYVPATNVQQQE 906


>gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 575

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   +  T  +++  I    + L+ L
Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAT--KFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + E  + + ++V E I +L+++A++K+I++  K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVKVQEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV   S     I +KD G GI E EI  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSDSTVTIKVKDTGIGIPEKEIERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  + S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573


>gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 604

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 168/438 (38%), Gaps = 25/438 (5%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWS--LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW 109
             +     A++           +++  +  L      L   ++V         + +    
Sbjct: 170 AVILFAPEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKS---LSLAARQ 226

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           +  G  ++ +       +     +  +L       L   ++  +     L   V      
Sbjct: 227 MARGDFSVRVPVASADELGQLAGSFNFLA----GELSRTVAALSREKEKLNRVVRDMTDG 282

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           V+   ++  ++  +     L G+  +  +          ++ V       E +     L 
Sbjct: 283 VLAFTASGRVLFANPRAEKLLGLPLSPGAELPVELLDPLRAAVAGEGTTGEINWQERVLA 342

Query: 230 VAKSLSDETRKRAEEE-------------NLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           V  +   E     E                  +  FLAS+SHELRTPL+ I G+ E +  
Sbjct: 343 VRAAPLQEEDPCGEAAVAILQDITTQKKMEQMRREFLASVSHELRTPLSFIQGYGEALAD 402

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                   +  +EY G I      L  L++++ DL+++ AG   L  + +   ++V    
Sbjct: 403 GL--ATGEKERQEYTGIILAEANRLRRLVDDLFDLNKMAAGHLPLELAEVDPGELVTGVA 460

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              Q    E  + +  +++P L  VWAD   + QV++NLL NA + T+ GGR+ ++ G  
Sbjct: 461 RKYQPLLAEHGLVLEVELEPYLPPVWADAGRLEQVLVNLLDNARRHTSPGGRITISAGL- 519

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +GR   IS+ D G GI  GE+P +   F +   +    + G GLGL I + ++  HGG+ 
Sbjct: 520 AGRELKISVADTGKGIPAGELPYIWERFYKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRV 579

Query: 457 LIRSKLREGVEVIAILPN 474
            + S+   G      LP 
Sbjct: 580 EVVSEPGRGSIFSFYLPL 597


>gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 779

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 9/257 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             +   +  A + S E+  +AE  + AKS FLA+MSHE+RTP+N +LG +E++    +  
Sbjct: 207 RPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTA 266

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 K +   I +SG  LL +IN+ILD S+I AG+  L  +   L + V +   ++  
Sbjct: 267 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSA 322

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           R  EKN+E+  ++DP L + V  D    RQ++ NL+ NAVKFT   G V + VG  +  G
Sbjct: 323 RVAEKNLELIVRVDPRLPTYVVGDAGRFRQIVTNLVGNAVKFTEK-GHVLIDVGGETVNG 381

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D G GI   ++  V   F Q   +     +G GLGL IA  ++    G+  
Sbjct: 382 VVQLKLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 441

Query: 458 IRSKLREGVEVIAILPN 474
           + S++  G      +P 
Sbjct: 442 VESEIGRGSVFWFAVPL 458


>gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
 gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
          Length = 1035

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 908

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 18/271 (6%)

Query: 230 VAKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             K    +  ++A EE + AKS FLA + HE+RTPLNA+ G + ++    +    N+  +
Sbjct: 245 QRKMAQQQASEKALEELSRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTEL----NDQQQ 300

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  I  SG++LL +IN ILD S+IEA + EL E A  L   + + + +   +A +KN+
Sbjct: 301 EFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFELGPCIEDILRLFVSQASKKNL 360

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----------GWT 396
           E+   ++ +   ++  D   ++Q++ NL+ NAVKFT   G V + V              
Sbjct: 361 ELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFT-DNGEVVIYVNGTPIKSTENEQEN 419

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++KD G GI       +   F Q   +      G GLGL I++ +    GG  
Sbjct: 420 PTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYGGTGLGLAISKRLSELMGGGM 479

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            + S   +G      +      +  P  + E
Sbjct: 480 WVHSTEGKGSTFNFTIQAKPAPSSSPVTSQE 510


>gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens
           TA208]
 gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3]
          Length = 611

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        N E    ++       + ++
Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAW--ENKEIAPRFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I +I  +   I   ++  +E+++E  +++      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  +V         YIS+KD G GI + ++  V 
Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G ++   LP
Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 766

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 129/252 (51%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           IA+ + A +   ++R RAE    AKS FL++MSHE+RTPLNA+LG +E++    +    N
Sbjct: 353 IAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHL----N 408

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE +  +  +G  LL+++N ILD S+ E+GR +L      L D+VRE   ++     
Sbjct: 409 FEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVL 468

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399
            KN++           +  D   ++QV++NLL NAVKFT   G + +TV    G      
Sbjct: 469 RKNLQFTFHPPEHDRWIVGDSLRLKQVLMNLLGNAVKFTDR-GAIELTVQPYPGSEPGKE 527

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +  +KD G GIA+  +  V   FGQ   ++     G GLGL I+Q I+   GG+    
Sbjct: 528 TIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCE 587

Query: 460 SKLREGVEVIAI 471
           S+   G      
Sbjct: 588 SRQFVGSRFHFS 599


>gi|256840539|ref|ZP_05546047.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides sp. D13]
 gi|256737811|gb|EEU51137.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides sp. D13]
          Length = 795

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + +  F     IL         + E E  + L  +  + A+  N AKS FL+ MSH++RT
Sbjct: 239 LRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRT 298

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G + +  +      + E   + +  I  S + LLNLINE+LD+S++E+G   L+
Sbjct: 299 PMNAIIGMTTIASMHI---DDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLT 355

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +    + ++++  I M+Q    +K  +            +  D + ++QV+LNLLSNA+K
Sbjct: 356 DEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNAIK 415

Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +T   G++ + +              +++ DNG GI    +  V   F +   A     Q
Sbjct: 416 YTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQ 475

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G GLG+ I+++I     G+ L+ S+  +G      +          ED+H
Sbjct: 476 GTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQLKLQDQGCFEDDH 525


>gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 944

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET------MGPLNNETYKEYIGDI 294
           R  E    K  F++ +SHELRTPL++I G  +++  +       +G       +  +   
Sbjct: 454 REREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQIS 513

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + Q L+ L+N+ILD+++IE G+ +L    +S + I R  +  L   A++  + I   +
Sbjct: 514 LNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDV 573

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P+L  V AD+  + QV++NLLSNA+KF++ G RV ++V + +      S++D GPGI  
Sbjct: 574 PPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETS-VVRFSVRDWGPGIPH 632

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q + A      G GLGL I++ ++  HGG+  ++S+  +G      LP 
Sbjct: 633 TDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLPL 692

Query: 475 TRVLNFIPE 483
            +V     E
Sbjct: 693 AKVQPPSSE 701


>gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
 gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
          Length = 902

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 13/250 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE+ K     ++++AE  +  KS FLA+MSHE+RTPLNAI+GFS++I        + 
Sbjct: 489 ITELEMIKRELQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAES----NDE 544

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G +  +   LL LINEILDLS+IE+G  E +    SL ++ RE       R  
Sbjct: 545 EERKTYYGIVESNNGRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFR-M 603

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYI 403
              + +  +       +  D+  + QVI NL+ NA KFT  G    ++ G+   G     
Sbjct: 604 PVGVSLVHEPSDESLMIETDKNRVFQVISNLIGNAAKFTKEGS---ISYGYKRVGDQIVF 660

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI   ++  V   F +      +  QG GLGL I +SI+   GG+  + S+  
Sbjct: 661 HVTDTGTGIEPEKVGRVFERFAKL----NNHAQGTGLGLSICKSIVERLGGKITVNSEFG 716

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 717 VGTTFNFTLP 726


>gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 398

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 11/252 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  ++  +    E +++AE  + +KS FLA+MSHE+RTPLNAI+GFSE++        
Sbjct: 6   HDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLA----AAT 61

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  ++Y+  +H + + LL L+N+ILDLS+IEAG  E   S + +  ++ +   +  ++
Sbjct: 62  EEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMK 121

Query: 343 A-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
              +  ++I  +       V +D   + QV+ N +SNA+KFT   G + +          
Sbjct: 122 IGYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTE-GSIRIGYKPCENG-L 179

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G GI+  ++  V   F +          G GLGL I ++I+   GG+    S 
Sbjct: 180 RFYVTDTGSGISADKLGGVFDRFVRLQSDKN----GTGLGLSICKTIVNKLGGEIGAESV 235

Query: 462 LREGVEVIAILP 473
           + +G      LP
Sbjct: 236 VGQGSTFWFTLP 247


>gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and
           response regulator receiver family [uncultured archaeon]
          Length = 406

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +A+++ ++ ELE       +  +     EE    KS FL+  SHELRTPL  +    +
Sbjct: 131 RAEADRERVLKELESKNVELQKAMEHMADLEEITRMKSEFLSITSHELRTPLTPMKAQLQ 190

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +I    +G L N+  K+ +  + R+   L  LI++ILDLSRIEAGR +L+   +++  IV
Sbjct: 191 MILEGYVGEL-NDNQKKSLEVVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIV 249

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +E II  +  A  K+IEI  K+   L  +  D + + QVI NLL+NA+KF+   G+V + 
Sbjct: 250 KEAIITQESSATSKDIEISTKLA-DLPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIE 308

Query: 393 VG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                         SI D G GI++ +   +   F Q   ++   + G GLGL I + I+
Sbjct: 309 TKCLDIEGKENVLFSITDYGIGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGII 368

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             H G+  I S+   G      +P
Sbjct: 369 HAHRGKVWIDSESGNGTTFYFTIP 392


>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 709

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F ++   L  +   +          + + +  +    E +++AE+ + AKSRFLA+MSH
Sbjct: 49  RFIHLNGRLILNEEGLPKQVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSH 108

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NA++  S ++  + +        ++Y+G + RSG++LL +IN+ILD S+IEAG+
Sbjct: 109 EIRTPMNAVINLSRLVLQDELTS----RQRDYVGKVLRSGENLLAIINDILDFSKIEAGK 164

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            EL      L +++ + ++ L   A +K I    ++   L   +  D   +RQ++LNL+S
Sbjct: 165 LELESVPFGLRELIDDVVVPLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVS 224

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + V     +G        + D+G GI+  +   +  SF Q   +I  
Sbjct: 225 NAIKFTEQ-GEVLLKVQLLKRQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINR 283

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              G GLGL I + ++   G +  + S    G      +      +  P    
Sbjct: 284 RFGGTGLGLAITKQLLGLMGSELEVESAPGAGSNFAFTIQLALADDASPPAAS 336


>gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1170

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L + +  +   +   D    EL +A+          +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G   S++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                  G GLGL I++ + A  GG   + S   +G     +LP   V         E
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731


>gi|170697001|ref|ZP_02888097.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170138175|gb|EDT06407.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1034

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 160/467 (34%), Gaps = 24/467 (5%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
           V  L+       G    S   F    +  H +     +     + L   +I         
Sbjct: 280 VESLLKLNPWRGGASSSSAPVFRDGFLLFHGK--LEPTGWTLAYALSWTDIAA--GVARS 335

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
                  TL        L  +    +         R++         +    + L     
Sbjct: 336 AGTLGAATLLALMVMWGLLLRFHRREFVPLYARSQRVFDSEALCRSVIEMAPIGLGLIAR 395

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
               ++ +  +   ++              A           +    ++   V    L  
Sbjct: 396 DDGHFMLVSPALRDMVERIGGDYHALSSEVADAWQARGDAGGVLHGDLLVGDVQAAGLHL 455

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                 + +           +  ++    K  L+          +E  + A+  N AKS 
Sbjct: 456 EFIACGARY-----QDTDVLIAAVADMTAKRQLV-------QQLEEAVRAADSANAAKSS 503

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILG  E++E   +    + T    +  +  S   LL L+++ILD 
Sbjct: 504 FLAAMSHEIRTPLNVILGNLELLERSAL----DATQHGRVHTLRTSATSLLALVSDILDF 559

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQ 370
           S+IEAG   +   A  L   V   +      A+ K +++F +    S   +  D     Q
Sbjct: 560 SKIEAGAMSVESIAFDLTAAVERELNAFATIAKAKGVQLFCEFHASSTQRMRGDPTRFAQ 619

Query: 371 VILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V+ NLLSNA+KFT +G                   + ++D G GIA      +  +F Q 
Sbjct: 620 VLRNLLSNALKFTDVGRVTVRVAVVAERHDAPELSVEVEDTGIGIAAEHRRKLFNAFSQV 679

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +I     G GLGL +   ++A  GG+  + S+   G     +LP 
Sbjct: 680 DTSITRRYGGTGLGLALCDRLVAAMGGRIAVESEPGFGSRFSVLLPL 726


>gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 793

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 12/277 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++L+ Q    +L +  +         ++ A++ +  +S FL+ M+HELRTP+NA++G  +
Sbjct: 239 RLLTLQKANLELKSSAKQRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLD 298

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    +   ++E+  E I     S  +L+N++N+ILD+++IE+G+ +L  S  S+ + +
Sbjct: 299 LLR---LSKQSSESM-ELIETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETI 354

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA---IGGR 388
              +      AQ+K I++  K    +   V  DEK  R+V+ NL+SNA+KFT      GR
Sbjct: 355 DGLVKSFLPSAQKKQIQLNIKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGR 414

Query: 389 VHV--TVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V++   V   S    YI  +I+DNG GI E +   +   F Q   ++     G GLGLPI
Sbjct: 415 VNLNCEVSQQSEELLYIKLTIEDNGIGINESDQSKLFAPFTQAQKSVTREYGGTGLGLPI 474

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +S++   GG+  + SK   G      LP + +    
Sbjct: 475 CRSLVQQMGGKITLTSKEGVGSTFTVELPFSLIETEQ 511


>gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297]
 gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297]
          Length = 589

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 12/254 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            RA++ + AKS FLA+MSHELRTPLN I+G  ++++ E   P        ++  +  S +
Sbjct: 215 DRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSP------WLNSLAVSSE 268

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--- 356
            LL  IN++LD S IE+G+  +  +   LI ++R+   +   ++ +  + +   +     
Sbjct: 269 ALLTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWS 328

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           S   V AD   +RQ++LNLLSNA KFT   G++ + V           + D G GI   +
Sbjct: 329 SHCWVMADGHKIRQILLNLLSNAFKFT-EHGQIVLAVQKQEDGQFQWRVSDTGIGIPADK 387

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
           +  +  SF Q     +    G GLGL I++ +    GG   + SK  +G +    LP   
Sbjct: 388 LEAIFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLPLPP 447

Query: 475 TRVLNFIPEDNHES 488
            R ++  P    ES
Sbjct: 448 ARPVSTPPPAEPES 461


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +     + +  KE    I+     +  
Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEKEKKEMAKVIYDESLRMGR 421

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG  EL    + L+  +   I      A+EK IE+  +       +  
Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAL 481

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T  GG V + +   SG G  I ++D+G GI E ++P V   
Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL IA++I+  H G   + SKL EG      LP  
Sbjct: 541 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|28897843|ref|NP_797448.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361774|ref|ZP_05774799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877003|ref|ZP_05889358.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260899074|ref|ZP_05907515.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28806056|dbj|BAC59332.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089142|gb|EFO38837.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308093690|gb|EFO43385.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308113233|gb|EFO50773.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 806

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229
             ++   L  +L        YI   + +   KI   +             E   LI +  
Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E S S   +  I+     +      EK ++
Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                  P+      D+  +RQV+ NLL+NAVKFT   G V VT+            I+I
Sbjct: 450 FKVTSLVPAGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568

Query: 466 VEVIA 470
                
Sbjct: 569 TTFTV 573


>gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira
           platensis NIES-39]
          Length = 856

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 27/273 (9%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A       ++ AE+ N AKS FLA+MSHELRTPLNAILG+SE+++ +      +
Sbjct: 577 ITEHKQA-EELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDAQDIGQD 635

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   + + +IH +GQHLL LI++I+D S+IEAGR         +  ++ E    +   A+
Sbjct: 636 DFVAD-LKNIHVAGQHLLTLISDIIDFSKIEAGRINFHLEKCQINTLLWEVETTIAPLAE 694

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396
           + + ++  ++ P L  ++ D   +RQ +LNLLSNA KFT   G+V + V           
Sbjct: 695 KNHNQLTLEVAPGLDLMYTDVTKVRQSLLNLLSNACKFTEQ-GQVILRVWQQLIPATDLP 753

Query: 397 -----------SGRGQYIS-----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                      S     IS     ++D G G+ E +I TV + F Q   +      G GL
Sbjct: 754 DLPIYHSPESPSETLSEISFIFWQVQDTGIGMNERQIATVFSPFTQADESTTRKYGGTGL 813

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I   +    GG   + S+L +G  +   LP
Sbjct: 814 GLSITHKLCQMMGGDLWVESQLNQGSTLTMRLP 846


>gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1012

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 22/334 (6%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
            LS   L N     A       +    L     +   V  +   G++   +S    +   
Sbjct: 270 VLSSITLPNGSWQLAAIPQTGWLDGFPLLVWLRLGGSVTAVLAGGLVFVLVSAPARLKKA 329

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + ++ + +                 +   +      +  +  K  FLA+ SHELRTPLN 
Sbjct: 330 VERATIAL--------------REREEDLERANTDLKHLDQLKDEFLANTSHELRTPLNG 375

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G +E +     G L++ T    +  I  SG+ L +L+N++LD S+I     +L    +
Sbjct: 376 IIGIAESLIDGATGQLSDLTQSN-LAMIVSSGRRLSSLVNDVLDFSKIRYSNIDLQLKPV 434

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L  I    I + Q    +KN+++   I+P   +V ADE  ++Q++ NL+ NA+KFTA  
Sbjct: 435 DLYTITDLVITLSQPLVGKKNLQLINSINPESPAVQADENRLQQILHNLVGNAIKFTAA- 493

Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G+V +                I I D G GI+E +   +  SF Q S        G GLG
Sbjct: 494 GQVEILAKKVDNLESDQEFLKIVIADTGIGISEDKFEQIFESFEQASGTTAREYGGTGLG 553

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L I + ++   GG+  + S+L EG +    LP  
Sbjct: 554 LAITKQLVELQGGKIEVFSRLGEGSQFSFTLPIA 587


>gi|32400388|dbj|BAC78683.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 771 DTDLTH----AQREILTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V + 
Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
 gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
          Length = 932

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 3/301 (0%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             A          +   +    +        +  +  + +      ++    LE A    
Sbjct: 608 LLAGSIGSASARVMVASIVKGEALSYEGVMEILDATSRAIEYSRRLEEKSHALESATEEL 667

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               +R +E +  K  F++ +SHELRTPL +I  F E++       ++ +  +E++  + 
Sbjct: 668 RAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNP--EMDADQRREFLEVVV 725

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R  + L  LIN++LDLS+IE+G  +     + L  + RE     Q    ++  ++  +I 
Sbjct: 726 RESERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQLHIEIA 785

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAE 414
              +++  D   + Q+I+NLLSNA KFT  G G+V + +    G    +S+ DNGPGI+ 
Sbjct: 786 SDDNAIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTDNGPGISA 845

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q S       +G GLGL I + I   H G   + S+   G   +  LP 
Sbjct: 846 EDQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGASFVCKLPR 905

Query: 475 T 475
            
Sbjct: 906 A 906


>gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
 gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
          Length = 595

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           EL+ A    +   K  E  N  KS F+A++SHELRTP+ A+ G  +++  E +G L N++
Sbjct: 353 ELQQANFKLEGLVKELEYLNELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKL-NDS 411

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +    +S + LLN +NE+LD +++E G++EL  S     +++RE   ++     +K
Sbjct: 412 QLDLLETAGKSIERLLNQVNELLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKK 471

Query: 347 NIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            +E+  +       ++ AD + + Q++LNLLSN++KFT   G++ +   +       I +
Sbjct: 472 KLELAVEIHAGENRTMRADRERILQILLNLLSNSIKFTPQRGKITIKA-YMEDNEMTIEV 530

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   +   + T F Q +  I     G GLGL I++ ++  HGG+    S   EG
Sbjct: 531 IDTGIGIPVEKQKNIFTKFYQVNNQIN----GTGLGLAISRQLIEMHGGKISFESTEGEG 586

Query: 466 VEVIAI 471
                 
Sbjct: 587 SVFKFT 592


>gi|312891713|ref|ZP_07751222.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311295796|gb|EFQ72956.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 604

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 160/366 (43%), Gaps = 11/366 (3%)

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
             + +G    L  +          +       +L    +  +    +   + ++   + +
Sbjct: 87  ILLIVGSFLVLSVVYVVFQDVNIIVIQLVILIILFGYYMLGVKWGTIYSLINVAPLLIYL 146

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV--KILSCQAEKDDLIAELEV 230
                A M  H+    L G   T   FF +I     + +     L    +  +     + 
Sbjct: 147 LWVDSAHMMSHLRPEKLDGYTVTVSVFFNFILIMFIQGHFYGAFLKNIKQLKEFADSEKQ 206

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                    +R+E+ + A+S FL++MSHE+RTPLNA++G S ++ +E+         KE 
Sbjct: 207 LNEQLGLAIERSEKSSKAQSEFLSTMSHEIRTPLNAVIGMSNLLMMES----PRPDQKEN 262

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  S  +LL L+N++LD ++IE+G+        +L ++++       ++A+EK +  
Sbjct: 263 LEILRFSAGNLLTLVNDVLDFNKIESGKITFENIKFNLHELMQHICGGQIMKAEEKGLNF 322

Query: 351 FQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SI 405
              +D  L    +  D   + Q+I NL+SNA+KFT  G   V ++          I  SI
Sbjct: 323 HLSVDTFLKTHYLIGDPTRLSQIIFNLISNAIKFTNRGAVTVDISCIEDRHNEATIKFSI 382

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIAE ++  +   F Q S+       G GLGL I + ++   GG+  + S++  G
Sbjct: 383 RDTGIGIAEEKMADIFDPFTQESVTTTRQFGGTGLGLAIVKRLLDLQGGRIGVSSEIGMG 442

Query: 466 VEVIAI 471
            E   +
Sbjct: 443 SEFEVV 448


>gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1133

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 8/264 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             IA+++  ++   + ++ AE  N AKS FLA MSHE+RTPL+A++G +E+    T+G  
Sbjct: 596 RDIADVKAIEADLRQAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTEL----TLGTE 651

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   ++ +     +  +LL +IN++LDLSRIEA   EL      L   +      L+ +
Sbjct: 652 LSPQQRDALETAREAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRPQ 711

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A  K + +   + P+    V  D+  +RQ++LNL+ NAVKFT  GG  V V         
Sbjct: 712 AARKGLFLTLAVAPNTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAAPDGDPGQ 771

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D G GIA   +  +   F Q    +     G GLGL I + ++ + GG+  + S
Sbjct: 772 LELAVADTGIGIAPDRLERIFDMFTQADRTVALNFGGTGLGLAICRELVRSMGGEIAVDS 831

Query: 461 KLREGVEVIA--ILPNTRVLNFIP 482
              +G        L   +V+   P
Sbjct: 832 VPGQGTVFRVKLRLTPAQVVPIEP 855


>gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
          Length = 948

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 8/236 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE  N AK  FL+ MSHE+RTP+NAI+G S++    +M     E  +E +G I  S Q
Sbjct: 558 ERAEAANRAKGEFLSRMSHEIRTPMNAIVGLSDL---TSMMDDVPEQVRENLGKIRSSSQ 614

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +LL LI++ILD+SRIE+G+  +S  A S+   V E   ML   A  + +E   + D    
Sbjct: 615 YLLRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKDVENR 674

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEG 415
           ++  D   ++QV+ NL+SNA KFT  GG + + V  T    Q       + DNG GI+  
Sbjct: 675 TLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVGISVE 734

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
               V  +F Q         QG GLGL I+++I+   GG+  ++S+L +G E    
Sbjct: 735 NQKRVFGAFEQVGPNYS-KSQGTGLGLTISRTIVGLMGGELKLKSELGKGSEFYFS 789


>gi|154323950|ref|XP_001561289.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10]
 gi|150842603|gb|EDN17796.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10]
          Length = 1310

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  ++D S+   V  D   +RQVILNL+ NA+KFT   G V +
Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866

Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                  + D G GI   ++  +  +F Q   ++     G GLGL I
Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++    G   ++S+  +G      
Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|117923856|ref|YP_864473.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607612|gb|ABK43067.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1302

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/510 (20%), Positives = 204/510 (40%), Gaps = 39/510 (7%)

Query: 15  LISPTGDHLGLEYPSKMDFDREIITLH-------VESLFRVSPILPLFVLLVANIG---- 63
            ++     L   Y +     ++++ L+       ++ +  ++    L   +VA++G    
Sbjct: 447 SVTEAFLQLTNSYGAPPTTLQDLLDLYGIEDRERLQHMLEIALQSGLKGDMVASLGGHNQ 506

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
            W             T+ ++     + ++ +  +    E       L + ++A      L
Sbjct: 507 LWLRTLLQPIRQGPATIKIHIVIQDITREHLIQEAHTREERRNTWLLKLNEVAYASGDAL 566

Query: 124 LTLVEPGTWTPEYLTIYKSATL---LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           + L   G  T           +   L  +    L       A    + P   A S QA +
Sbjct: 567 MELALQGAITLSASPQAFFIWMDSSLNHICQERLYPAPRDPAAVDRYRPARFAPSQQAFI 626

Query: 181 S--------------MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           S                ++          AL      +      +++ L   A+    + 
Sbjct: 627 SKESVLHHAQAATDQPALVLPLFEDRQVIALLGVLGASTPYDNRDIQHLHYFAQGLWRVL 686

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +    + +  +    A+  N  K RFLA+MSHE+RTP+NAI+GF+E+    ++       
Sbjct: 687 QRRRDQEMVKQATAEAQRANAVKGRFLANMSHEIRTPMNAIMGFTEL----SLTQHPPAP 742

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +  ++  I  + Q LL L+N++LD S+I+A +  L +   S  + +++   ML  +AQ K
Sbjct: 743 HDRHLQAIRTASQTLLALLNDVLDFSKIDAEQLALEQIPFSPTEQLQQIAQMLAPQAQAK 802

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG-- 400
            +        S+ ++   D   +RQV++NL+SNA+KFT   G+V + +     T      
Sbjct: 803 GLHFHTFQQGSMPTLLLGDALRLRQVLINLVSNAIKFTHQ-GKVVLGMYGNEPTPEGRCL 861

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+G GI   +   +   F QG ++      G GLGL I++ ++   GG+  + S
Sbjct: 862 LRFEVIDSGIGIEASQQERLFQPFVQGDLSTTRTYGGSGLGLAISKRLVHLMGGEMQLES 921

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            L  G +   +LP +   + + +    S Q
Sbjct: 922 TLGAGSKFSCLLPFSLCKDDLAKSLTPSAQ 951


>gi|298377589|ref|ZP_06987541.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
 gi|298265608|gb|EFI07269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
          Length = 795

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             +I+      +    ++   +     + +  F     IL         + E E  + L 
Sbjct: 212 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 271

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + A+  N AKS FL+ MSH++RTP+NAI+G + +  +      + E   + +  I 
Sbjct: 272 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 328

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354
            S + LLNLINE+LD+S++E+G   L++    + ++++  I M+Q    +K  +      
Sbjct: 329 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 388

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409
                 +  D + ++QV+LNLLSNA+K+T   G++ + +              +++ DNG
Sbjct: 389 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNG 448

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  V   F +   A     QG GLG+ I+++I     G+ L+ S+  +G    
Sbjct: 449 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 508

Query: 470 AILPNTRVLNFIPEDNH 486
             +          ED+H
Sbjct: 509 FTMQLKLQDQGCFEDDH 525


>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1480

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++    ++     ++ A+    AKS FLASMSHE+RTP+N +LG   ++    +   
Sbjct: 672 HDISKRMKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL--- 728

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  K  +     S + LL LIN+ILD S+I+AG+ EL     +L  ++ E    +  +
Sbjct: 729 -TDYQKRRVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQ 787

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRG 400
           AQ K++E+   +     S V  D   +RQ + NL+ NA+KFT+  G V +  G   SG  
Sbjct: 788 AQNKSLELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSK-GEVLIEAGLRDSGDE 846

Query: 401 QYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 I D G GIA  +I ++  SF Q   +      G GLGL I Q I    GG   I
Sbjct: 847 WCFWCVITDTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSI 906

Query: 459 RSKLREGVEVIAIL 472
            S++ +G  V   +
Sbjct: 907 TSEVGKGTRVEFTI 920


>gi|254517110|ref|ZP_05129168.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
 gi|219674615|gb|EED30983.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
          Length = 1470

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 11/315 (3%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLS 235
               +                      +   L++  ++     Q  +++L A+++   +  
Sbjct: 771  SLSVRKLPPPWLSGIAYTVYGIMMLLLVASLWRRQLQKQRLEQKAREELEAKVKERTADL 830

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     AEE + AKS+FLA+MSHE+RTP++ I+G ++++    +G   N   + Y     
Sbjct: 831  EVATAAAEEASKAKSQFLATMSHEIRTPMHGIIGMTDLL----LGTALNPPQRRYAETAK 886

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-EIFQKI 354
            +SG++LL++IN+ILD S+IEA + E+ + +  +  ++     +  + A++KN+  +   +
Sbjct: 887  QSGENLLSIINDILDFSKIEASKIEIDKHSFDINLLIDRVCQLQSVTAEKKNLGLLSYPV 946

Query: 355  DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
                S ++ DEK + Q + NL+ NA+KFT+  GR+ VT    +         +S+KD G 
Sbjct: 947  TNCSSEIYGDEKKIGQCLTNLVGNAIKFTSE-GRIQVTATVEAKGQDDWVLELSVKDEGI 1005

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G+ E     V   F Q   +      G GLGL I +  +    G+ ++ S  + G  V  
Sbjct: 1006 GMDEETQSRVFEQFTQADASTTRRFGGTGLGLSITKQFIELMNGEVILESAPQAGTTVTI 1065

Query: 471  ILPNTRVLNFIPEDN 485
             +P   +   + E  
Sbjct: 1066 KIPTKVMGPELTEPT 1080


>gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 569

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 + ++++   AE+              +  R++AEE +  KS FLAS SHELRTP
Sbjct: 278 HRPWSDAEIELVRELAEQVGTAIAHGTLYKELELAREQAEEVSRLKSEFLASTSHELRTP 337

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF ++I        + E  +E+I + H S  HLLN+IN+ILD+++IEAG+ EL  
Sbjct: 338 LNGMIGFLKLILEGM--ADDPEEQREFIQEAHNSALHLLNIINDILDIAKIEAGKMELEF 395

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVK 381
           S + L  +  +       +A  KN+    +I        ++ + + + QV+LNL+ NA+K
Sbjct: 396 SPVELEYLFNKVYDFTAQQAHHKNLSFTLEIPAVYDGIVMYGNYQRLLQVMLNLVGNAIK 455

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT  GG + ++                    + + D G G++  +   +  SF Q    +
Sbjct: 456 FTDEGG-ITISAEVIRKKVHFQGQEFPGHVKVRVADTGIGVSLDKQDKLFQSFSQVHGGL 514

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
                G GLGL I+Q ++   GG     S     G  V   +P 
Sbjct: 515 NRPYGGTGLGLAISQKLVETMGGVVHFFSMGENLGSTVTFTVPL 558


>gi|149191688|ref|ZP_01869930.1| sensor protein TorS [Vibrio shilonii AK1]
 gi|148834477|gb|EDL51472.1| sensor protein TorS [Vibrio shilonii AK1]
          Length = 973

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 11/293 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLS---DETRKRAEEE 245
           A  L             L +    +    A++   L    E          + R  AE+ 
Sbjct: 407 AQALKVVAEAEAAAKRELQEHKEHLEEIVADRTLQLQKSNERLNQEVLNHAKARNAAEQA 466

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+N +LG + ++E   +        ++++  I+RSGQ+LL ++
Sbjct: 467 NRAKSAFLATMSHEIRTPMNGVLGTATLMEETPLNN----QQQKFLDVINRSGQNLLAIL 522

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAG  E+      L  ++++C  ++  +A EK ++    I+  +S V+  D
Sbjct: 523 NDVLDYSKIEAGHLEIRNKPFDLYRMIQDCYQLMLGKALEKGLDFKFHIESDVSDVYCGD 582

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QV+ NL+ NA+KFT  G   ++V++         I + D G GI+  +   +  +
Sbjct: 583 VTRLSQVLNNLVGNAIKFTPSGQVDIYVSLDPDDETCVMIEVSDTGVGISPEDQLNLFDA 642

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F Q      +A  G GLGL I+Q ++    G   + S L EG     ++P  +
Sbjct: 643 FTQAENGYSTA-GGTGLGLAISQKLVKAMNGAIYVDSYLEEGSRFWFVVPLEQ 694


>gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 400

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 3/229 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS +L+ +SHELRTPL  ILGFS+++  E  G L N+  K+Y+  I  SG+HLL L+N+ 
Sbjct: 173 KSDYLSHVSHELRTPLAGILGFSKMLREEIYGTL-NDKQKQYVNGIRISGEHLLALVNDF 231

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS+IEA + EL    +++ DI    I M+Q +A E+N+ +  K+   +     D++ +
Sbjct: 232 LDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVDFCKVDQRKI 291

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+++NLLSNA+KFT   G V + V           + D G GI E +   +   F Q  
Sbjct: 292 KQILINLLSNAIKFTEK-GSVTLEVDKI-DCLLTFCVVDTGIGIKEEDQQKLFQPFQQIH 349

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +    +G GLGL +++ +   H G   ++S+  +G      LP   V
Sbjct: 350 SNLSRKHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPLREV 398


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
          Length = 1143

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 17/266 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            + I E   ++    + +++AEE +  KS FLASMSHE+RTP+N I+G  ++++   +   
Sbjct: 746  EDITERWKSEEALKKAKEQAEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTADL--- 802

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N     ++    RS   L+ L+++I+D SRIEAG+  +  + +SL  +      +    
Sbjct: 803  -NADQASFVDMAVRSCDRLVRLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPL 861

Query: 343  AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WT 396
            +    + +   +DP+L   +  D   ++Q++ NL+ NA KFT   GR+ V          
Sbjct: 862  SGSNGVVLDFTLDPALPDRILGDAFRLQQILNNLVDNACKFT-TSGRITVQAWNLTAVEP 920

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 +  + D G GI + ++  +   F Q       + +GVGLGL I + ++   GG  
Sbjct: 921  RTVRVFFEVSDTGIGIPDEDLRRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGM 980

Query: 457  LIRSKLREGVEVIAIL------PNTR 476
             + S+  +G      L      P  R
Sbjct: 981  SVTSEAGKGTTFAFSLRFETDCPPAR 1006


>gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512]
          Length = 538

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 191/456 (41%), Gaps = 8/456 (1%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
                 L      +    RE+  L    L   + ++   V L A             M  
Sbjct: 42  RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVC 101

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L     +++L ++  ++ I       + + +  G +        +  +         
Sbjct: 102 AAFLFSAVGSIALARQGSSAGIATQSAEDFFLSVTPGLVLFLDPHGSVATIGGRDRRDFL 161

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             +           +      +   A+         A     +    V            
Sbjct: 162 AWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQR------- 214

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +     +     L+    +   ++  +  ++ +      AE  N AKSRFLA++
Sbjct: 215 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 274

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFS+++  E  G   N+  +EY+G +  SG HLL+++N +LD+S+IEA
Sbjct: 275 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 334

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GRYEL   A  +   VR C  ML L+A+ K + +  +I  SL  + AD++ ++Q+++NL+
Sbjct: 335 GRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRSLGEIVADQRAIQQILINLV 394

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NAVKFT  GG V +           +++ D G GIA  ++  +   F Q         +
Sbjct: 395 GNAVKFTEAGGVVSIDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 453

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 454 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 489


>gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
 gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
          Length = 500

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L++
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIAST-YNELSD 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  ++++      ++ Q
Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVK-Q 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H   T      +  Y
Sbjct: 367 LPEIEIKALLPDDDIYINTDATRLKQVICNFINNARKFTEK-GYIHFGFTSHSEKDQLVY 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVESEI 481

Query: 463 REGVEVIAILPNTR 476
            +G   I  LP  R
Sbjct: 482 GKGSRFIVTLPFKR 495


>gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
           WH47]
          Length = 953

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 28/271 (10%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +   ++ +  AE  N ++  FLA+MSHE+RTP+ AILG +++++     P N 
Sbjct: 538 VDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLKDPDN- 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I R+G  LLN+IN+ILDLS+I++G+ +L    +    ++ E   ++ +RA 
Sbjct: 597 ---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRAS 653

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK++ +  + D  +   +  D   +RQ++LNL+ NA+KFT   G V + VG+     +  
Sbjct: 654 EKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDS-GEVKILVGYDGPGKRPA 712

Query: 402 --------------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
                                  I D G GI   +  ++   F Q       +  G GLG
Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLG 772

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I + +    GG   + S   +G +    +
Sbjct: 773 LAICRRLAHALGGDVSVESTYGKGSKFTLTI 803


>gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 575

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   + +   +++  I    + L+ L
Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + E  + + ++V E I +L+++A++KNI++  K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKVQEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV  ++     I + D G GI + EI  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNS-IVVIKVTDTGIGIPKKEIERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  + S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIPIVKKADP 573


>gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22]
 gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKEKLEESEIELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N+  KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654


>gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 660

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKEKLEESEIELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N+  KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654


>gi|39656353|gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolus heterostrophus]
          Length = 1239

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 708 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 767

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +
Sbjct: 768 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 823

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L  RA E+ + +   +  ++   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 824 FNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKV 882

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +     +           ++ D G GI   ++  +  +F Q   +      G GLGL I
Sbjct: 883 AISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 942

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++ ++   GG+  + S   +G          RV    PE      Q   Y
Sbjct: 943 SKRLVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989


>gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes Clip81459]
 gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J2-064]
 gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J1-175]
 gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 1816]
 gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A]
          Length = 596

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 339 LLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +       
Sbjct: 457 LAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
           R    I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 577 SVESELGKGSDFIITLPLYK 596


>gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 470

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             +        +AL    I S  +    L    A         T  + K ++        
Sbjct: 163 LFLLAGVGGFFLALGFTFIASRKLSSPLLEMQAA---------TKKIAKGDLNTKVIVRS 213

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           KD++ +      +L+ E ++  +     +S F AS+SHEL+TP++ ++G+SEV++ +   
Sbjct: 214 KDEIGSLAVGINNLTQELKRHHDT----RSEFFASISHELKTPVSYLMGYSEVLKEKLY- 268

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E  ++Y+  +      L  LI+++ DLS++E G++++++  I L ++     +   
Sbjct: 269 -QTEEEKEQYLSILEHEATRLNYLISDLFDLSKMEEGKFDINKEWIDLTELADNLDMKYS 327

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           L+A+EK++    K+D +LS  + D K + QV  NLL NA++ T   G V           
Sbjct: 328 LKAKEKDLLFTVKVDENLSLFYGDGKRIEQVFTNLLDNAMRHT-TNGEVTCEF-RQGDNQ 385

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I IKD G GI   E+P +   F +   +      G GLGL I + ++  HGG   I S
Sbjct: 386 INIIIKDTGSGIPADELPFIFDRFYRVEKSRSREFGGTGLGLAIVKMLVKLHGGTIDITS 445

Query: 461 KLREGVEVIAILP 473
           K  EG +     P
Sbjct: 446 KENEGTQFTLSFP 458


>gi|218709123|ref|YP_002416744.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218322142|emb|CAV18256.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 818

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   LI          +  + +A+    AK+ FLA++SHE+RTP+N +LG ++++    +
Sbjct: 314 EIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 373

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   ++++  ++ SG H++ L+NEILD S+IE GR +L E+   L  I+     + 
Sbjct: 374 ST----EQEKHLKSLYDSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 429

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWT 396
              + EK ++     + PS    ++D+  +RQ++ NLL+NAVKFT+ G   V++  +   
Sbjct: 430 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEIVER 489

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I ++D G GI++     +   F Q   +      G GLGL I + I     G  
Sbjct: 490 GDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGSI 549

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            + S+   G      L   ++    P +  ES  +K
Sbjct: 550 SVTSEEGIGTSFDVRL---KIKPCQPGEI-ESLPHK 581


>gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 865

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 9/260 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                +  L   +          ++ AE   +AKS FLA+MSHE+RTPLNAI G + ++ 
Sbjct: 457 ELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLANMSHEIRTPLNAITGMTHILR 516

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P   +     +  I  +G+HLL +IN ILDLS+IEAG+  L    + +  ++   
Sbjct: 517 RSGLSPEQTDK----LDKIEGAGKHLLEIINAILDLSKIEAGKLTLESVPVHVGSLLENV 572

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             ML  RA+   I I  +     S +  D   ++Q +LN  +NA+KFT   G + + V  
Sbjct: 573 ASMLSQRARALGIAINLEPITISSPLLGDPTRLQQALLNYATNALKFTEQ-GHITLRVKE 631

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +           + D G GIA   +P +  +F Q   +      G GLGL I + +   
Sbjct: 632 EAQTEERVTLRFEVSDTGVGIAPNILPKLFGTFEQADNSTTRKYGGTGLGLAITKKLAEL 691

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG   + S   +G      
Sbjct: 692 MGGTVGVSSIEGQGSTFWFS 711


>gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 510

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/278 (36%), Positives = 153/278 (55%), Gaps = 1/278 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                 I     +     L     +   + E+E  +         AE  N AKSRFLA++
Sbjct: 186 QFMHVRIEMTAIRGATGRLRRIVAQLSDVTEMERLRRDVARKAAEAESANDAKSRFLAAV 245

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNA+LGFS+++  E  G L N+  +EY+G I +SG HLL+++N +LD+S++EA
Sbjct: 246 SHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEA 305

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GRYEL   +  + + +  C  ML L+A+EK + +  +I   +  + AD++ +RQV++NL 
Sbjct: 306 GRYELLMESFPISETIASCEAMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLA 365

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT  GG V +      G    +++ D G GIA  +I  +   F Q         +
Sbjct: 366 GNAIKFTDAGGVVSIDAAR-EGGMLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYE 424

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL + + ++A HGG F+I SK  EG  V   LP 
Sbjct: 425 GTGLGLSLVKGLVALHGGTFVITSKPAEGTVVTITLPA 462


>gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 596

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTPL+ + G+SE +  +  G    +  KE    IH     +  
Sbjct: 356 RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAG--TPDERKELAQVIHDESLRMGR 413

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW 362
           L+ ++LDL+++EAG   ++   + +  + +         A+E+ I +  ++   +   + 
Sbjct: 414 LVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIE 473

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPT 419
            DE  + QV+ NLL NA + T     V +      +       I ++D G GI   ++P 
Sbjct: 474 GDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPY 533

Query: 420 VLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           V   F +   A    A  G GLGL I ++I+  H G+  ++S L +G      LP  R
Sbjct: 534 VFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYR 591


>gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
          Length = 1028

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 158/355 (44%), Gaps = 6/355 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TL+ L+ P         +Y +  ++     + +S   +      +   +  ++     M 
Sbjct: 319 TLIALIMPVHVYTVGTIVYDAIDVVTLGICTFISIRAVFKKQEGAVIILTSSIIVVFSMI 378

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-- 239
              +         T ++   +  +   ++     +   + +D+I      + + ++ +  
Sbjct: 379 YDTVFELKLVGGHTEVTPIAFFIFIFLQAFTLARNFSKDYNDVIVMTTQLEDMLNKEKTL 438

Query: 240 -KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++  + +  K  FLA+ SHELRTPLN I+  +E +     G + N+  +  +  +  SG
Sbjct: 439 TEKLTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEGYV-NDMQRRNLSLVVSSG 497

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L NL+N+ILD+SR++     L+        ++   + + +     K + I   I+  L
Sbjct: 498 KRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFEYIKPNKQVRIELSIEEKL 557

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  DE    Q++ N++ NA+KFT   G++ V+          I I+D G GI+E ++ 
Sbjct: 558 PFILVDEDRFNQILFNIIGNAMKFTHK-GKIAVSTERI-DNFVEIRIEDTGIGISEDKLD 615

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +F Q   +I     G+GLGL I ++++  HGG   + S++ +G      +P
Sbjct: 616 QIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVESQINKGTIFRFTVP 670



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 323  ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
            E AI+L   +      L+L       ++  + D   S        + Q    L+ NAVK 
Sbjct: 888  EQAIALEKEIEYVNSYLKLEKARFGEKLTIEFDIDDSIKAKIPPLVIQP---LVENAVKH 944

Query: 383  T----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
                 + GG V +++  T      +S+KD+G GI++  +  +           K    G 
Sbjct: 945  GVMKKSEGGTVRLSIKET-NGEINVSVKDDGVGISKDILQGI------LKNDSKRRSVG- 996

Query: 439  GLGLPIAQSI---MANHGGQ-FLIRSKLREGVEVIAIL 472
                   ++I   +    G+   I S   EG E+   +
Sbjct: 997  ------VKNIDKRLKRISGRGLQINSNEGEGTEIQFSI 1028


>gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 626

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 153/344 (44%), Gaps = 8/344 (2%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
            +   I   + L+ ALS       +L Y VF       +A+   A      ++  L    
Sbjct: 280 GQKWVILAVSPLVDALSPLVEIRRVLFYMVFALLTASFLAVLYIAWELARPVE-KLRDYA 338

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
               +        L     ++        D++  L+          + A+  N  KS FL
Sbjct: 339 INKANLNAKQPMRLNFRIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFL 398

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+ SHELRTPLN I+G   +++       + E   E++    ++  HLL +I+++LDL++
Sbjct: 399 ATTSHELRTPLNGIIGCLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAK 456

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAG+  +S   + L  ++ E I +  +  Q+K + +  KI+P    V AD K ++QVIL
Sbjct: 457 IEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVIL 516

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           N+L NA+KFT   G + +              I++KD G GI   +   +   F     +
Sbjct: 517 NVLGNAIKFTEK-GNITIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGS 575

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
                 G GLGL I++++M   GG   + S+ +  G  V   LP
Sbjct: 576 TTRKYSGTGLGLAISRNLMQLMGGNITLSSEGIDLGTTVKICLP 619


>gi|332143228|ref|YP_004428966.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553250|gb|AEA99968.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 641

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 14/322 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L     L+    + A+   +++   V  + +   +    S  + I     K N+  L  
Sbjct: 169 SLSTIASLTSLVTLFAVVIVSLLMGKVTQVFVVSPIEKIKSAASRIALDHKKVNID-LQQ 227

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E   L  ++E      ++   +A++ N AK+ FLA MSHE+RTPLN I G + ++   
Sbjct: 228 NDELGRLARDVEAMSGEIEQYVAQAQQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDT 287

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     E   +Y  D+  S   L  +IN++LDLS+IE+G  E+  +  +L +++R+ I 
Sbjct: 288 PL----TEKQHQYASDLKSSASILATVINDVLDLSKIESGMSEIDVTEFALDNMLRDLIT 343

Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393
           +L   A   N  +          +V +D   +RQ+I+NL+SNA+KFT   G V ++    
Sbjct: 344 LLGTNASANNTRLVYTSKNMDSVAVTSDITKLRQIIINLVSNAIKFTHK-GTVSISAKLK 402

Query: 394 ----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        +++KD G GI    +  +   F Q   +I     G GLGL IA+ + 
Sbjct: 403 KPSTEEVCENRLVVAVKDTGIGIEPDRLEHIFDKFTQSDSSITREYGGTGLGLAIARQLA 462

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG   + SK+ EG      
Sbjct: 463 QLLGGDIKVVSKVGEGSCFTVT 484


>gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
 gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
          Length = 611

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        N E    ++       + ++
Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAW--ENKEIAPRFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I +I  +   I   ++  +E+++E  +++      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  +V         YIS+KD G GI + ++  V 
Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G ++   LP
Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42]
 gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42]
          Length = 611

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      ++       + ++
Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I +I  +   I   ++  +E+++E  +++      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  +V         YIS+KD G GI + ++  V 
Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G ++   LP
Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|150007164|ref|YP_001301907.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935588|gb|ABR42285.1| two-component sensor histidine kinase with response regulator
           receiver domain [Parabacteroides distasonis ATCC 8503]
          Length = 793

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 9/302 (2%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             +I+      +    ++   +     + +  F     IL         + E E  + L 
Sbjct: 210 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 269

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + A+  N AKS FL+ MSH++RTP+NAI+G + +  +      + E   + +  I 
Sbjct: 270 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 326

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354
            S + LLNLINE+LD+S++E+G   L++    + ++++  I M+Q    +K  +      
Sbjct: 327 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 386

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409
                 +  D + ++QV+LNLLSNA+K+T   G++ + +              +++ DNG
Sbjct: 387 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNG 446

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  V   F +   A     QG GLG+ I+++I     G+ L+ S+  +G    
Sbjct: 447 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 506

Query: 470 AI 471
             
Sbjct: 507 FT 508


>gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 608

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHE RTPL ++     ++  E  G L NE  +E +   +   + L  
Sbjct: 373 EIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGKL-NEEQRELLEAAYEDVERLTG 431

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS+IE+GR E+    +++ +IV + +     +A+EK I +      +    WA
Sbjct: 432 LVNDLLDLSKIESGRIEMEFDKVNINEIVEKTLDPFYKQAKEKEIALNFNKQENNIFAWA 491

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   +  VI NL+ NA+++    G + +      GR   +S+ D+GPGI +     +   
Sbjct: 492 DPTKVSWVISNLIGNALRYA-DNGEIEIKAE-VKGRRVLVSVTDDGPGIPKEYQSKIFDK 549

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +     K+ + G GLGL I++ I+  H G+  + S+   G      +P 
Sbjct: 550 FVRAGN-DKNEKSGTGLGLAISKEIITAHNGRIWVESEEGNGSTFSFYIPR 599


>gi|237748106|ref|ZP_04578586.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379468|gb|EEO29559.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 1068

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           + ++L    +  ++  + E  +    +    AE+ N AKS FL+ MSH++RTP+N I+G 
Sbjct: 527 HDRLLLTVRDIHEMRLKEERVRQTLTDALMVAEKANNAKSDFLSKMSHDMRTPMNGIIGL 586

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + +I  +     + +  KEY   I  +  HLL LIN++LD+S+I++G+  L     +L+ 
Sbjct: 587 A-MIAEKYR--HDPDRMKEYFSKITVASHHLLGLINDVLDMSKIDSGKIVLVSERFNLVS 643

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++++ + ++    + +   +   +   +   V  D+  ++QV +N+LSNAVKFT  GG +
Sbjct: 644 LLKDVVDIVMPDLKSRQHAVRMSVASDVHERVEGDQLRLQQVFMNILSNAVKFTPAGGHI 703

Query: 390 HVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            + V  +           +   D+G G+++  +  +   F +   ++ S   G GLG+PI
Sbjct: 704 GIDVSESPSTFAGYGCYRLVFSDDGIGMSKEYLKKIFVPFEREDNSMTSKISGTGLGMPI 763

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           +++I+    G F + S+   G      
Sbjct: 764 SKAIVEMMNGSFDVESERGVGSTFTIT 790


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+NAI+GFS +   + + P      ++Y+  I +S   LL +IN+ILD 
Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDELPPKP----RDYLEKIDQSAHSLLKIINDILDF 345

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQ 370
           S+IEAG+  + E    L +++     M+ +R +EK +E+   + P    ++  D   + Q
Sbjct: 346 SKIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQ 405

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V++NL +NAVKFT   G + + V              +IKD+G G+ E +I  +   F Q
Sbjct: 406 VLINLTNNAVKFTEQ-GEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQ 464

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNF---I 481
              +   +  G GLGL I + ++ + GG+  + S   +G       I P     +    +
Sbjct: 465 ADDSTTRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPRDSQASPRCLL 524

Query: 482 PEDNHESTQYK 492
           P  + E   ++
Sbjct: 525 PPADIECFDHR 535


>gi|257094176|ref|YP_003167817.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046700|gb|ACV35888.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1119

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 138/262 (52%), Gaps = 8/262 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  +  L   +    +     ++ AE  N AKS FL+SMSHELRTP+NAI+GF++++E
Sbjct: 709 ELERYRAHLETLVAQRTAELSLAKEAAERANRAKSEFLSSMSHELRTPMNAIIGFAQMLE 768

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                   +    + + +I ++ +HLL+LINE+LDL+RIE+GR ELS     +  +V +C
Sbjct: 769 ---YDGELSADQHDSVHEILKASRHLLDLINEVLDLARIESGRIELSLETTDIAAVVDDC 825

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             +++  A    I +   +    ++V AD   ++Q +LNLLSNAVK+    G + + V  
Sbjct: 826 RHLIEPLAAPLAITLSTLVPAG-ATVHADRTRLKQALLNLLSNAVKYNRERGSIQIDVEQ 884

Query: 396 T---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               SG  Q I + D G GIA   +  V   F +  +A  S  +G G+GL I + ++   
Sbjct: 885 QLTASGLRQRICVADTGIGIAPQRLNEVFQPFTRL-LAENSEIEGSGIGLTITKRLVELM 943

Query: 453 GGQFLIRSKLREGVEVIAILPN 474
           GG+    S++  G      LP 
Sbjct: 944 GGEIAAESEIGVGSRFWIDLPA 965


>gi|90020053|ref|YP_525880.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89949653|gb|ABD79668.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 498

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 12/328 (3%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF------KSNV 212
           L  A+ L+ + +++++ +    S  V    L   L+   S        L       +   
Sbjct: 176 LASALNLTIWVLIISILSMLFASSWVQQRVLFRRLSKFESLIASEVEQLTGSKLVKRDGD 235

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +I   QA    ++ E   A    +   + AE  N AKS FLA+MSHELRTPLN+I+GFS+
Sbjct: 236 EIDGIQANFLTMLQEKHEADVEREMALEAAEASNQAKSDFLANMSHELRTPLNSIIGFSK 295

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            I         +E     +G I RSG+HLL LIN++LDL++I+AGR E+S     L  + 
Sbjct: 296 RILKTQ--ENLDERQVHSLGVISRSGEHLLQLINDVLDLTKIDAGRMEISPRPTDLTQVC 353

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           R  I   Q  A  K + +      +L     DE  +RQV+LNL+SNAVK++   G + V 
Sbjct: 354 RYAIEDQQEAAHSKGLRLTLHAPETLVG-EVDELRIRQVMLNLVSNAVKYSEQ-GEIVVA 411

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS-IAIKSAEQGVGLGLPIAQSIMAN 451
           + +       I ++D+G GI   +   +   F Q    +     +G GLGL I    +  
Sbjct: 412 LRYV-DDAIEICVEDSGIGIKAEDQKRLFKRFEQFDMQSRMQIGRGSGLGLYIVNEFVRL 470

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479
           H G   + S+   G      LP+  V+ 
Sbjct: 471 HKGWLKVESEYGRGSRFYVYLPSKAVVE 498


>gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1177

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 165/375 (44%), Gaps = 14/375 (3%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
             ++  ++ G    +L       +      + ++A  ++AL+I  L   +    +     
Sbjct: 376 IFVMPVMSRGTALAVLEFASFTAFDDSQKALLEAALPMLALNIEILERNLRTLDLLEESQ 435

Query: 169 PVVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                L             L ++   +  +       +     ++  + L  ++E   L 
Sbjct: 436 TQAEELKASEEELRAQGEALQVANEELRVSEEEL--KVQQEALQTANEELRLKSE--ALE 491

Query: 226 AELEVAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              +  +    E  +RA   E+ +  KS FLA+MSHELRTPLN++L  +  +     G +
Sbjct: 492 ERGKALEDARAEADRRALDVEQASRYKSEFLANMSHELRTPLNSVLILARDLADNDTGNM 551

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +++   E    IH SG HLL LIN++LDLS++EAG+  L    I++ D+V+         
Sbjct: 552 SDDQV-ESARVIHESGTHLLALINDVLDLSKVEAGKMTLDPVTIAIADLVQVIRGRFAPV 610

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +K +    ++DP L   + AD   + Q+  NL+SNA+KFT+ GG V V +  T     
Sbjct: 611 ATDKGLGFQVEVDPDLPRSLKADRGKIEQIANNLVSNAIKFTSEGG-VTVRLSLTGDGHV 669

Query: 402 Y-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +S+ D G GIA  +   V  +F Q          G GLGL I++ +    GG   + +
Sbjct: 670 LALSVADTGIGIAPQDRQRVFAAFEQADSGTSRQFGGTGLGLTISRKLARLMGGDITLDA 729

Query: 461 KLREGVEVIAILPNT 475
              +G     +LP  
Sbjct: 730 NGDKGSVFTLLLPLA 744


>gi|253578664|ref|ZP_04855935.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849607|gb|EES77566.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 955

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +  ++L +SL   ++  ++    +       ++  K      +   L  ELE  +    
Sbjct: 506 FIQDNLLAVSLIVGISIFVALCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                A+  N AK+ FL +MSH++RTP+N I+G   ++E       + E  K+ +  I+ 
Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+L+N++LD++++E+     S+ +I+L  + +E    L  +A+EK + +  + D 
Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411
            S   VW++   ++++++NL +N++K+  + G ++++   +  +         IKDNG G
Sbjct: 683 YSGIYVWSNAVHLKKILMNLFTNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIG 742

Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++E  I   + T F Q   + +S   G GLG+PI + ++   GG   + SKL EG     
Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802

Query: 471 ILPNTRVLNFIPEDNHE 487
           ILP     N   E+  +
Sbjct: 803 ILPFKIDTNARLEEKED 819


>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1260

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 149/283 (52%), Gaps = 8/283 (2%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +  F      L    V+ L   A+  +    LE  + +  +    A+  + AK+ FL+
Sbjct: 833  GEVVSFVLSFMLLSDDQVEKLELDAKIAEQNDLLEKQQVMLQKALSMAQSSDRAKTTFLS 892

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +MSH++RTP+NAI+GF+++           +   +Y+  + +S  HLL+LIN++LD+SRI
Sbjct: 893  NMSHDIRTPMNAIVGFTDLAMAHI---DEKDQVLDYLHKLGQSSNHLLSLINDVLDMSRI 949

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
            E+G+  LSE    L++IV     ++Q     KN+    ++D S S +  D+  + QV+LN
Sbjct: 950  ESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEMDISESGIVCDKLRLNQVLLN 1009

Query: 375  LLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            +LSNA+K+T  GG +H+ +                I+DNG G+    + T+   F + + 
Sbjct: 1010 VLSNAIKYTQAGGSIHMHISEKESMKPDSSMYEFRIRDNGMGMNPDFLKTIYEPFTRANS 1069

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  S  QG GLG+ I ++I+   GG+  I S+  +G EV+  L
Sbjct: 1070 STVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKGTEVVIDL 1112


>gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1326

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 31/376 (8%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +L  + +++L  F   +   L      + +    I++    +  L      A       +
Sbjct: 762  VLGVIELASLRPFTSLHLDLLERLKETIGVDVNTIVANSRTEALLGESQHLAQELQAR-S 820

Query: 205  YHLFKSNVKILSCQAEKDDLIA-------ELEVAKSLSDETRKRAEE-------ENLAKS 250
              L +  +++     E ++  A       ++E+     ++ R+  EE        +  KS
Sbjct: 821  EQLQRQQIELQRSNTELEEKAALLASRNRDIELKNIEIEQARQELEERAHELSQASTYKS 880

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA+MSHELRTPLN+ L  ++++     G L      +    IH +G  LL LIN++LD
Sbjct: 881  DFLANMSHELRTPLNSALILAKLLADNMEGNLT-PQQVDLAKTIHSAGTDLLQLINDVLD 939

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
            LS++EAG   L    + L ++      + +   ++K +E    + PSL   +  D   + 
Sbjct: 940  LSKVEAGHMSLLPEDVELSELTEHVESLYRPLTEDKGLEFSVVLSPSLPPSLRTDRNRLE 999

Query: 370  QVILNLLSNAVKFTAIG-----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            Q++ N+LSNAVKFT  G             V V    ++ R    +++D G GI   ++ 
Sbjct: 1000 QILRNMLSNAVKFTDKGKVELRIRPAPATEVTVPALRSAARRVAFAVRDTGIGIPSDKLS 1059

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +  +F Q          G GLGL I++ +    GG+  +RS +  G      LP    +
Sbjct: 1060 RIFEAFQQLDGTTSRKYGGTGLGLSISRELTTLLGGELQVRSDVGVGSTFTLYLPVETEV 1119

Query: 479  ---NFIPEDNHESTQY 491
                 +PE   +  Q 
Sbjct: 1120 VGGELVPEPARDGGQQ 1135


>gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
 gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
          Length = 611

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 375 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 491

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +         IS+ D G GI +  +  +  
Sbjct: 492 MDADKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 550

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  +   
Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMAKEEE 607


>gi|84385456|ref|ZP_00988487.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84379436|gb|EAP96288.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 574

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 10/293 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L A +    +     RK AE  N AKS FLA MSHELRTPL
Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVTARKDAERANKAKSEFLAMMSHELRTPL 225

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G  + ++   +    N+  +  + ++  S + LL +I+++LD S+IE+G + L+  
Sbjct: 226 NAIIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             ++ D V   +   +  A +K + +    D P     + D   + Q++ NL+ NA+KFT
Sbjct: 282 WSNVRDTVTFVLSEQKKTADDKGLALTVTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G VHV++ +      YI+++D G GI+  ++ ++ + F Q    I     G GLGL 
Sbjct: 342 ER-GHVHVSIKYLQSSF-YITVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP--EDNHESTQYKC 493
           I + ++    G+  + S+  +G +    LP  TRV N +   E++  S + + 
Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVQLPVLTRVTNNLAHCEEDKSSRELRS 452


>gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 807

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +    E +++AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 567 ITQLKETECKLMEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSGLVSET----EDP 622

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  KEYI  +  +   LL LI++ILDLS+IEAG ++     I++  +  + +  LQ++ +
Sbjct: 623 DERKEYISIVEANNNLLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTSLQMKLK 682

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+    +     + +D   + QV+ N ++N+VKFT   G + V      G      
Sbjct: 683 -PGVELVFDRNLPEYHIVSDRNRLYQVLSNFVNNSVKFTFK-GSIKVGYEKVDGMRLRFY 740

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GIA  +   V   F +      S   G GLGL I +SI+   GG   + S+  +
Sbjct: 741 VSDTGLGIAPDKQKAVFDRFVKL----NSFVPGTGLGLSICKSIIQQLGGTIGVDSEEGK 796

Query: 465 GVEVIAILP 473
           G     ILP
Sbjct: 797 GSCFWFILP 805


>gi|312217907|emb|CBX97854.1| similar to two-component histidine kinase [Leptosphaeria maculans]
          Length = 1300

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++A L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 700 EMDELKRKINQMVASLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 759

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +
Sbjct: 760 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTL 815

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L  RA E+ + +   ++  +   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 816 FNALKSLASRANERKLNLAYDVNHKVPDYVIGDSFRLRQIILNLVGNAIKFT-ELGEVKV 874

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +     +           ++ D G GI   ++  +  +F Q   +      G GLGL I
Sbjct: 875 AISMAQDQECGPDQYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 934

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++ ++   GG+  + S   +G          RV    PE +    Q   Y
Sbjct: 935 SKRLVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEISAIQPQLMAY 981


>gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 641

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 131/304 (43%), Gaps = 16/304 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRKRA 242
             + L  +++        +   L   +      Q E        EL   +      R +A
Sbjct: 319 RPLVLDVLISPLRDRNGRLRGRLIVWHDITRLKQIEEVLRQRNDELTALQQTLMVARDQA 378

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  + AKS FLA MSHE+RTPL+AILG++++I L+ +       Y+E +  IH S QHLL
Sbjct: 379 EAAHRAKSAFLAHMSHEVRTPLSAILGYTDLIRLD-LTRRGQSVYQEELEAIHASAQHLL 437

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN ILDLS+I+AGR  L     S+  +V       +  A      +     P    + 
Sbjct: 438 TMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARNGNSLTVIRAPDADLMT 497

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------SGRGQYISIKDNGP 410
           +D+  +RQV+LNLLSNA KFT   G + + +                       I D G 
Sbjct: 498 SDKTKIRQVLLNLLSNAAKFT-ENGAISLRIWRELSLSPAMKAIDDGADWIVFEIADTGI 556

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA   +P +   F +   A      G GLGL I++      GG   + S   +G     
Sbjct: 557 GIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGGDITVASAPGKGTTFTV 616

Query: 471 ILPN 474
            LP 
Sbjct: 617 RLPA 620


>gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           brevis ATCC 367]
          Length = 618

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + A+  F++++SHELRTPL ++  + E +        + +   +++         ++ +I
Sbjct: 375 DQARREFVSNVSHELRTPLTSVRSYIEALSEGAW--KDPKVAPDFLKVTQEETDRMIRMI 432

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPSLSS 360
           N++L LSR+++G  ++    ++L ++    +    +  ++ +       I +        
Sbjct: 433 NDLLTLSRMDSGTQKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLW 492

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D     QV+ NL++NA+K++  GG V   +  T      +S+ D G GI   +IP +
Sbjct: 493 VEIDTDRFTQVLDNLMNNAIKYSPDGGVVTARLLETHNN-VILSVSDQGLGIPRADIPRI 551

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A   A+ G GLGL I++ ++   GG+  + S+   G      LP
Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604


>gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB]
          Length = 620

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 16/374 (4%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            +    +        +        L+++    + +  +          +L     ++  +
Sbjct: 118 AVPITVSGESFGQIQFGIDIAPFTLALNRTQRWFMALSALEMGLVAFFSLILGTYLTRQL 177

Query: 185 LDISLAGMLATALSF---FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRK 240
             +  A        F                +  +   EK    I+ L  +K+   + ++
Sbjct: 178 TALRNASREIAEGRFDRPLKIDGNDELAETAQAFNHMVEKVAGSISSLRESKAKLRQAKE 237

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  N AKS+FLA+MSHELRTP+  I+G S ++    +    +E  +++   I RS   
Sbjct: 238 EAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTEL----DEQQRDFADTIQRSANA 293

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILDLS IEA +  L+ +  S   ++ E + ++   A  KNI +  +I   L  
Sbjct: 294 LLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKNISLISQIADDLPE 353

Query: 361 VW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGE 416
           +   D   +RQV+LNLL NA+KFT  G   + V    T    Q     ++D G G+  G 
Sbjct: 354 ILVGDAIRLRQVLLNLLGNAIKFTEQGSVTLEVAHQPTDDGRQRLNFVVRDTGIGMTPGV 413

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472
           +  + T F Q  ++      G GLGL I++ ++    G+    S+   G          L
Sbjct: 414 VNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESEPDVGSTFRFHIVADL 473

Query: 473 PNTRVLNFIPEDNH 486
           P T V    P+   
Sbjct: 474 PETSVAEEQPQKAD 487


>gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1011

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 172/465 (36%), Gaps = 33/465 (7%)

Query: 38  ITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
            T   + LF +S  +P      V          T       +  I LAV A    L  + 
Sbjct: 327 RTAFGDGLFSLSQPIPETDWTLVQTFTLRSLLATIGLRAGWYVAIMLAVIALVWWLLVRF 386

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
               +K  +       ++  +                   P  + +   A   + L    
Sbjct: 387 DRRVLKPDDAR--TRRVIDSENLNRTI---------VEAAPSGIALLSLADGAVLLQNDT 435

Query: 154 LSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + ++    A   S    ++     S  A      L ++L       +     +    F+ 
Sbjct: 436 MRDYDARRAGEPSLPARLLEHFDRSPAAAAWQPDLHVTLPTAGGETVDLLVNLVRTRFRD 495

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +L   ++              +       + ++     FLA+MSHE+RTPLNAILG 
Sbjct: 496 TDVVLCNFSDITSQKNIERQLDEAARAADAANDAKSA----FLATMSHEIRTPLNAILGN 551

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E+I  E +      T +E +  +  +   LL+LIN+ILDLS+IEAG+  +      L +
Sbjct: 552 LELIGREPLAA----TQRERLQTVEGASSVLLDLINDILDLSKIEAGQMTIEAIPFDLAE 607

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +R+   M +  A  K ++    +D +L      D   +RQ+  NL+ NA+KFT   G +
Sbjct: 608 TIRQTGAMFEPLATAKGLQFDVFVDDALPARYLGDPTRIRQIAANLVGNAIKFTNH-GEI 666

Query: 390 HVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + V             I + D G G+ + +   +   F Q   +I     G GLGL + 
Sbjct: 667 TLEVYLRDDTDPASPIAIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALT 726

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + +     G   ++S+  +G   +  LP     +      H++ Q
Sbjct: 727 KQLTQMMHGTVDVKSEPGKGSTFVVTLPLRPATDAQ-VAEHDAAQ 770


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  +LV     G       L E        L +     +L  + ++
Sbjct: 1192 FRPGEALIGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGNVLGVIELA 1251

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            + + F      FL+    ++A S   I      ++ L                   +  +
Sbjct: 1252 SFTPFTQIQKDFLNQIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKA 1311

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1312 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1371

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L      E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1372 LRTPLNSLLILAKLLADNADSNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1430

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1431 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1490

Query: 379  AVKFT----------AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIP 418
            AVKFT            G  V V +                    S+ D G GIA  ++ 
Sbjct: 1491 AVKFTDSGAVELVIRPAGADVPVAIREQLLEAGSLRDADAGLIAFSVTDTGIGIAASKMR 1550

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1551 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1606


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 12/265 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++L+  +S      K A+  N AK  FLA+MSHE+RTP+N ++G SE+ +   +   
Sbjct: 213 RDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETEL--- 269

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + Y+  + + G  LL+L+N++LD S+IEAG+  L +   +   ++ E I      
Sbjct: 270 -DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGT 328

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            ++K IE+    D  +   V  D   ++Q+  NLL NAVKFT   G + ++        Q
Sbjct: 329 VKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAVKFTEA-GEIVLSAHIVERSAQ 387

Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  ++D G GI+E     + +SF Q  ++      G GLGL I + +     G   
Sbjct: 388 LAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMAGSLS 447

Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482
           + S++ EG      +P    L+  P
Sbjct: 448 VDSRVGEGSTFTLEVPFE--LSSTP 470


>gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 425

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 139 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 198

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 199 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 257

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 258 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 317

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 318 LIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 377

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 378 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 418


>gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 768

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 15/253 (5%)

Query: 226 AELEVAKSLSDETRKRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           A +   K +  E R +A  EE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 524 ALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 579

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  KE+   I  + + LL L+N+ILDLS+IEAG+ +   S  ++  + R      Q R 
Sbjct: 580 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 639

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
           ++  + ++ +I      +++++  + QVI N L+NA KFT  G    + +G+     G Y
Sbjct: 640 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 695

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI    +P V   F +      S  QG GLGL I Q+I+ N  G+  + S+ 
Sbjct: 696 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVDSEE 751

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 752 GKGSTFWFTIPCA 764


>gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1]
          Length = 1370

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 12/237 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS+FLA+MSHE+RTP+  +LG +E++    MG   ++  +EY+ +I  S   LL +IN
Sbjct: 795  RLKSQFLANMSHEIRTPITGVLGMAELL----MGMELDQEQQEYVENIQSSATSLLTVIN 850

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363
            +ILD S++E+GR ++ E   SL  IV+E   MLQ   + KN++    +   +     V  
Sbjct: 851  DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVGDGIENDLVVIG 910

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            D   +RQ++ NLL+N++KFT   G V  +V              S++D+G GI +     
Sbjct: 911  DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVVAEKETSETIEVKFSVEDSGIGIQDDVRKK 969

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F QG  +      G GLGL I ++++    G+  + SK+  G      +P  +
Sbjct: 970  LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLESKVGVGTRATFWVPFNK 1026


>gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 806

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +      R +AEE +  KS FLA+MSHE+RTPLN+I+GFS ++        + 
Sbjct: 567 ITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAET----DDR 622

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EYI  +  + + LL L+++ILDLS+IE+G ++   S + + +   + I  ++++  
Sbjct: 623 EERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSMEMKVP 682

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E    +F+K  P    ++ D+    QVI N ++NA+KFT   G + +    T+       
Sbjct: 683 ETVDLVFEKYMPD-CHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHEIKFY 740

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + +I ++   F +      +  QG GLGL I +S+++  GG+  + S   E
Sbjct: 741 VRDTGFGIPKEKIDSIFERFVKL----NTFVQGTGLGLSICKSLVSQMGGKIGVESTEGE 796

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 797 GSCFWFTHP 805


>gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 806

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   KI                 E   LI +  
Sbjct: 274 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSDDEIGQLIEKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 334 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E       +  I+     + Q    EK + 
Sbjct: 390 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLR 449

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                  P+      D+  +RQV+ NLL+NAVKFT   G V V +      +G    + +
Sbjct: 450 FRVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELAEKSSKAGTKLILKV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GGQ ++ S+   G
Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAG 568

Query: 466 VEVIAIL 472
                 +
Sbjct: 569 TTFTVEI 575


>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
 gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
          Length = 932

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 14/280 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            + +   +        + +    +  LEV      + R +A   N AKS FLA++SHELR
Sbjct: 241 RLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELR 300

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+I GF  ++  +      +   + Y+  I +S  HLL LIN++LD S+I+AG+ EL
Sbjct: 301 TPLNSIDGFIHLMLRQ---QNLSNEQRLYMQTIRKSSAHLLALINDVLDFSKIDAGKLEL 357

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             +A +L + + + + ML   A +K+I++      ++   V  D   ++Q++ NL+SNA+
Sbjct: 358 ETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGDNIPEIVIGDALRVKQILTNLISNAI 417

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V V            + S++D+G G++  +   +  SF QG  ++     
Sbjct: 418 KFTPD-GEIIVRVRMEHDDIDQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 476

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471
           G GLGL I++ ++    G              +G      
Sbjct: 477 GTGLGLAISKQLVQLMHGHIGFEDNQERAPTEKGSTFWFT 516


>gi|89074574|ref|ZP_01161046.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
 gi|89049678|gb|EAR55237.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
          Length = 971

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 162/366 (44%), Gaps = 24/366 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I   A +LI                  +   +        I      +++  G      
Sbjct: 344 AIGLLALVLIMWRFVYARVICRINEYSRALSALTRGDLGVRINVKGDDELAQMGRAILVA 403

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIA--------ELEVAKSLSDE-------TRKRA 242
                  Y L ++  K      E    +         ELE      +E        R  A
Sbjct: 404 RETANERYRLAQAESKARQELQEHKASLERLVAKRTGELEKINRRLNEEVYNHYKARDEA 463

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA+MSHE+RTP+N +LG + ++    +        K Y+  I+RSG+ LL
Sbjct: 464 EKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQLTS----QQKRYLDVINRSGETLL 519

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +++N+ILD S+IEAG  ++  S  S++ +V +   ML+ R+  K I +   I P +  VW
Sbjct: 520 DILNDILDYSKIEAGHLDIRSSNFSVVRMVTDVSNMLEGRSLAKRIGLECHISPQVEGVW 579

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPT 419
             DE  +RQV++NL+ NA+KFT   G+V + V            S+KD G GI E     
Sbjct: 580 FGDESRIRQVLVNLVGNAIKFTDT-GKVSIFVEPHPDMPDELLFSVKDTGIGIDEEAQSL 638

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           + ++F Q +   KS  +G GLGL I++ I+A   G+  + S + EG      LP      
Sbjct: 639 LFSAFQQAAAGRKS-IEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLEHGEG 697

Query: 480 FIPEDN 485
            +  D+
Sbjct: 698 SLETDD 703


>gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 626

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 153/344 (44%), Gaps = 8/344 (2%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
            +   I   + L+ ALS       +L Y VF       +A+   A      ++  L    
Sbjct: 280 GQKWVILAVSPLVDALSPLVEIRRVLFYMVFALLTASFLAVLYIAWELARPVE-KLRDYA 338

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
               +        L     ++        D++  L+          + A+  N  KS FL
Sbjct: 339 INKANLNAKQPMRLNFRIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFL 398

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+ SHELRTPLN I+G   +++       + E   E++    ++  HLL +I+++LDL++
Sbjct: 399 ATTSHELRTPLNGIIGCLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAK 456

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAG+  +S   + L  ++ E I +  +  Q+K + +  KI+P    V AD K ++QVIL
Sbjct: 457 IEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVIL 516

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           N+L NA+KFT   G + +              I++KD G GI   +   +   F     +
Sbjct: 517 NVLGNAIKFTEK-GNITIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGS 575

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
                 G GLGL I++++M   GG   + S+ +  G  V   LP
Sbjct: 576 TTRKYSGTGLGLAISRNLMQLMGGNITLSSEGIDLGTTVKICLP 619


>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1174

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 153/268 (57%), Gaps = 13/268 (4%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            ++  +   +    IAE ++A+    +    A+  NLAKS FL+SMSHELRTPLNAILGF
Sbjct: 660 AIQQCTLFEQAKTEIAERKLAEQALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGF 719

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+V+  ++        +++++  I+R+G+HLL+LIN+IL++S+IEAG+ +L+E++ +LI 
Sbjct: 720 SQVMVRDSSLKN---EHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIR 776

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++     + +L+A+ K +++   +   +   V  DE  +RQV++NL+ NA+KFT   G V
Sbjct: 777 LLGTLEEIFRLKAESKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTET-GSV 835

Query: 390 HVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            + V   S              I+D GPGIA  E+  +   F Q     KS  QG GLGL
Sbjct: 836 TLRVKLKSENEISSLALPLQFEIEDTGPGIAAEEMNKLFAPFEQTKTGQKSQ-QGTGLGL 894

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIA 470
           PI++  +   GG   + S +  G +   
Sbjct: 895 PISRKFVQMMGGDISVTSTVGLGSKFAF 922


>gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 536

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 11/367 (2%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           +  I   +   ++ L       P Y+ + K +     +                S     
Sbjct: 9   LYAILDAVGMAVIVLEVGDDGVPRYIAMNKRSREFTKIPQEGWYGKSALEIFGGSTGERA 68

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV- 230
           +A+ T    S       +                 +F S  K+       +D+ +E E  
Sbjct: 69  LAIHTSVARSAKKKTYEINLPAVQGTRHIRTTMTPVFDSTGKLTHMVGSTEDVTSERERD 128

Query: 231 -AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A  L+   +++AEE N AK RFLA+MSHE+RTP+N ILG  E+++   +    ++    
Sbjct: 129 AALELTRIAKEKAEEANKAKERFLANMSHEIRTPMNGILGICELLKETEL----DKEQSL 184

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +   I  S   LL +IN++LD S+I A +  L     SL  ++ E  ++L  +   K ++
Sbjct: 185 FADTIFNSTNALLEIINDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLSAKTAYKGLK 244

Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405
                  ++ S+   D   +RQ++LNL+ NA+KFT   G V +TV     +        I
Sbjct: 245 FNVNYPENVPSLFIGDVSKVRQILLNLIGNAIKFTDE-GHVSITVSHGQGSPAGPLQFEI 303

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   ++ T+ ++F + S   K+  +G GLGL I+Q+++   GG+  ++S    G
Sbjct: 304 ADTGCGIEASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEISVKSTPDLG 363

Query: 466 VEVIAIL 472
                 L
Sbjct: 364 TTFRVSL 370


>gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
 gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
          Length = 1586

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    +    AE+   AKS FLA+ SHE+RTPLNAILG + ++  E++     E+    +
Sbjct: 825  EQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG+ LL ++N++LDLS+IEA    L    + L + + E   +   +A+ KN++  
Sbjct: 881  DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFK 940

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402
             ++   L   V AD   +RQ++ NLLSNA+KFT++ G + + V                 
Sbjct: 941  LEMGADLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRVEVIDKFSWNGAEKNIVR 999

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             SI D G GI+E     +   F Q   +      G GLGL I   ++    G+  + S  
Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1059

Query: 463  REGVEVIAILPNTRVLNF 480
             +G    A +P   + + 
Sbjct: 1060 GQGSTFWAEMPLQTLSDE 1077


>gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 826

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K+ FLA+MSHE+RTP+N I+G ++++    +     E  ++Y+  I  S + LL +I
Sbjct: 448 DRTKTEFLANMSHEIRTPMNGIIGMADLLSETAL----PEEQEQYVQIIRTSSKALLKII 503

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILDL+R+E+G+  L      L   +   + +L+  A+EK + +       L   V AD
Sbjct: 504 NDILDLTRMESGKLSLEPVDFDLERCIESAVDILRPVAREKGLTLNVNYATDLPKSVRAD 563

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLT 422
           +  +RQ+++NL+ NAVKFTA  GRV V V           I ++D+G G+++ ++  +  
Sbjct: 564 DGRVRQILVNLVGNAVKFTAS-GRVDVRVLRAQSDPYRLTIDVQDSGIGMSQAQLNNIFD 622

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F Q   A   +  G GLGL I++ +     G   + S+  +G      +
Sbjct: 623 RFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHSEPGQGSCFSLYI 672


>gi|157285953|gb|ABV31705.1| histidine kinase [Botryotinia fuckeliana]
          Length = 1315

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  ++D S+   V  D   +RQVILNL+ NA+KFT   G V +
Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866

Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                  + D G GI   ++  +  +F Q   ++     G GLGL I
Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++    G   ++S+  +G      
Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 356

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 99/233 (42%), Positives = 145/233 (62%), Gaps = 2/233 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE  N AKS FLA+MSHELRTPLNAI+GFSE++E    GPL +  Y+EY  DI+ SG+
Sbjct: 113 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSARYEEYATDINSSGK 172

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +LL +IN+ILD+S+IEAG++ L +  I L  ++ E + ++ L+A +K I +  +I  +L 
Sbjct: 173 YLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADAL- 231

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           S++AD + ++Q+++NLLSNAVKFT  GG + V    T      ++I+DNG GI +  +  
Sbjct: 232 SLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 290

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F Q          G GLGL I++S+    GG   IRS    G  V   +
Sbjct: 291 LGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRI 343


>gi|167645279|ref|YP_001682942.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347709|gb|ABZ70444.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 573

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 169/431 (39%), Gaps = 25/431 (5%)

Query: 47  RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
           R+ P   +   L A    +     I   W               ++              
Sbjct: 5   RLLPSRFIPATLTAVAVIFALGPVIAFSWLAALACGEGLARLATRQFKAGVRGSHRQRAA 64

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               ++  + I L W  L  +      PE      +  +   +      +         +
Sbjct: 65  ---FVLAALPINLAWAGLGALLWLAPAPELKMAAVAIWVGQIVYTQNFRHQPAALLAVSA 121

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           F P+   L             +                + L    +  ++         +
Sbjct: 122 FAPMTSLLVFPLFFYDAHGTAANVAR------------WGLMAVVLTTINVMLSNRAAAS 169

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            ++       E R+RA E N AKS F+A  SHELRTP+N +LG +  ++   +    NE 
Sbjct: 170 RMDALTRNLREERERALEANRAKSTFVAVTSHELRTPMNGLLGMAYALDRSNL----NEA 225

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + ++  + +SG  L+ ++N++LDLS+IEAG+ +L   A +L D++R      +  A EK
Sbjct: 226 QRRHVRLMIKSGDSLMQVLNDVLDLSKIEAGKVDLDHVATNLHDLIRSAGDAWRDAAAEK 285

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-- 402
            + +  +IDPS    + AD + +RQV++NL+SN +KFT+ GG  + +T    S  G    
Sbjct: 286 GLWLRTEIDPSAPAWILADPQRVRQVLMNLISNGLKFTSQGGVTIQLTAARPSDEGVREI 345

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D G G+       +  SF Q   A+  +  G GLGL I++++     G   +   
Sbjct: 346 QLRVVDTGIGVTAEFHDRIFDSFTQADNAVSRSHGGTGLGLTISRALARQMDGDLTLEHG 405

Query: 462 LREGVEVIAIL 472
              G   +  L
Sbjct: 406 A-SGATFVFTL 415


>gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1168

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 4/291 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L +    +   + E D     L   ++  +E  +  +  +  KS
Sbjct: 440 AHLETQQAELEQTNEKLSEQAQTLADQRDELDQRNTALGRIQAQLEERAEELQRASRYKS 499

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++     G L+ E  K +   I+ +G  LLNLIN+ILD
Sbjct: 500 EFLANMSHELRTPLNSSLILAKLLAENARGNLDEEQVK-FAESIYSAGNDLLNLINDILD 558

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           ++++EAG+ E+      L  ++     + +  A+E+ +    +    L   ++ D +   
Sbjct: 559 IAKVEAGKLEVRPERTPLAGMLESLSDVFEPLARERGLSFEIERQAELPQTLFTDRQRAE 618

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA KFT  GG V + V     +    ++ D+G GIA  +   +  +F Q   
Sbjct: 619 QILRNLLSNAFKFTDRGG-VTLRVSRHDEQTLAFAVSDSGIGIAPDQQAVIFEAFRQADG 677

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                  G GLGL I++ +    GG   + S   EG     +LP  R+L+ 
Sbjct: 678 TTNRRYGGTGLGLSISRDLAGLLGGSIGVSSVPGEGSTFTLLLP-ERLLDH 727


>gi|17226812|gb|AAL37947.1|AF396827_1 two-component osmosensing histidine-kinase [Botryotinia fuckeliana]
          Length = 1315

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  ++D S+   V  D   +RQVILNL+ NA+KFT   G V +
Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866

Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                  + D G GI   ++  +  +F Q   ++     G GLGL I
Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++    G   ++S+  +G      
Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 542

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E     +   + +++AE  + AKS FLA MSHE RTP+N ILG   ++     GP   E 
Sbjct: 143 ERYRLMAELSKAKQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNGPQETE- 201

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +  + +  +  L LI ++LD+S+IEAG  EL+    S  D++   +  +   A+EK
Sbjct: 202 ---LLSMMKQCAESQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFSAREK 258

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            +++   ID  L   + +D + +RQV++NL+ NAVKFT+  G V +      G      +
Sbjct: 259 GVKLAVDIDRGLPRELVSDARRLRQVLMNLVGNAVKFTSE-GEVRIHARKFDGCLVEFRV 317

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI+   I ++  +F Q   +     QG GLGL I + ++   GG   + SK+  G
Sbjct: 318 TDTGIGISPKYIDSIFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESKVGRG 377

Query: 466 VEVIAIL 472
            +    +
Sbjct: 378 SDFRFTI 384


>gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 24/302 (7%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +     ++         K  + +L     +  +  +     +   E++ +AE  N AKS 
Sbjct: 362 LWGLLAAYQLNHPRQWQKVELYLLKQAGAQLGVALQQAELLNQLRESKNKAEAANQAKSA 421

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLNAILGFS+++  +    L+    K+ +  I+RSG HLLNLIN++L++
Sbjct: 422 FLANMSHELRTPLNAILGFSQLLARDENLTLS---QKQNLNSINRSGSHLLNLINDVLEM 478

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+  L+ +   L+ ++     M  L+A+ K + +  +    +   ++ DE  +RQ
Sbjct: 479 SKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNIQKSSKIPLYIYIDENRLRQ 538

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS------------------GRGQYISIKDNGPGI 412
           V++NLL+NA+KFT   G V + V   +                      Y  ++D G GI
Sbjct: 539 VLINLLTNALKFT-ESGSVTLRVSTQAISLPEESATHPQNDTTQPSLSLYFEVEDTGIGI 597

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           AE E+  +  +F Q S   +S  +G GLGL I    +    G   ++S+  +G  V   +
Sbjct: 598 AEDELDDIFDAFIQTSSGQQSQ-EGTGLGLAICHHFVNLMQGDIQLQSRQGQGTTVFMQI 656

Query: 473 PN 474
           P 
Sbjct: 657 PV 658


>gi|239993376|ref|ZP_04713900.1| Signal transduction histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 641

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 21/351 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVV-----VALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++ L       +   +   +       A+   +++   V  + +   +    S  + I  
Sbjct: 157 VTVLQPADALQSFLSTIAWLTSLVTLFAVVIVSLLMGRVTQVFVVSPIEKIKSAASRIAV 216

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              K ++  L    E   L  ++E      ++   +A++ N AK+ FLA MSHE+RTPLN
Sbjct: 217 DHKKVSID-LQQNDELGSLARDVEAMSGEIEQYVAQAQQANRAKTDFLAVMSHEIRTPLN 275

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I G + ++    +    ++   +Y  D+  S   L  +IN++LDLS+IE+G  E+  + 
Sbjct: 276 GIQGLATLLLDTQL----SDKQHQYASDLKSSASILATVINDVLDLSKIESGMSEVDVTE 331

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
             L  ++ + I +L   A   +  +  K       +V +D   +RQ+I+NL+SNA+KFT 
Sbjct: 332 FDLDAMLNDLITLLGTNASANSTRLVYKSKNMESVAVTSDITKLRQIIINLVSNAIKFTH 391

Query: 385 IGGRVHVTVGW-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
             G V ++           S     I++KD G GI    +  +   F Q   +I     G
Sbjct: 392 K-GTVTISAKLKQPSQDTVSENHLVIAVKDTGIGIEPDRLEHIFDKFTQSDSSITRKYGG 450

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNH 486
            GLGL IA+ +    GG   + SK+ EG        + + RV+    + + 
Sbjct: 451 TGLGLAIAKQLAQILGGDIKVVSKVGEGSCFTVTAKVQSRRVVESSADSDS 501


>gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
 gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
          Length = 591

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++G +      L  LI +I
Sbjct: 367 RTEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLGIMKDESDRLHRLILDI 424

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LSRIE     +++  + +   + E    +   A++KNI++          +  D   +
Sbjct: 425 LALSRIEQHALPINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIETDNDKL 484

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+I+NL+SNAV +T   G V V V  +       ++ DNG GI   EI  V   F +  
Sbjct: 485 KQIIINLVSNAVAYTPENGTVKVDVEESP-HEVLFTVADNGIGIPAKEIERVFERFYRVD 543

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            A      G GLGL I + +    GG+  + S   EG      LP T+
Sbjct: 544 KARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLPKTK 591


>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 878

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 11/323 (3%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ML  +  +    ++  L       +H    S+   L T +         +   N +  
Sbjct: 286 SIMLMTSAVMVIIVLLCWLGFGTWYRVHSKLDSIIHSLNTLIHEHVKGEKVVVDGNDEFT 345

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               + + ++ E         +T++ A   N AKS FLASMSHE+RTPLN I+G +E++ 
Sbjct: 346 IFAEQVNRMMEEQNRQTEEILQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILS 405

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        KE + DI  S   LL L+N+ILDLS+IE+G  +LS     + ++V + 
Sbjct: 406 QSDLSDH----QKEVLSDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQS 461

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +I+ Q +A  K +E+   +D  +   +  D+  ++Q+I+NL+SNAVKFT   G +++ V 
Sbjct: 462 VILFQSKATSKRLELNINLDERIPARIKVDDHRIKQIIMNLVSNAVKFTEQ-GSINIDVN 520

Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +     Q        + D G GI + ++ T+   F Q    I     G GLGL I + ++
Sbjct: 521 YQESTTQKSVFLTFRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLV 580

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
           A  GGQ    S    G      +
Sbjct: 581 AMMGGQLTASSSKGIGTSFEFSI 603


>gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1060

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++      ++ A      K  F+A+MSHE+RTP+NAI+G + ++E   +    ++  +  
Sbjct: 331 SRHREQLAQQEAARLARVKGDFIANMSHEIRTPMNAIMGLAYLLEQGGL----DDGQRAL 386

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  IH++GQ LL +IN+ILD S+IE+GR EL +   SL +++     ++      K++E+
Sbjct: 387 VRKIHQAGQALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLEL 446

Query: 351 FQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                P   + +  D   + QV+LNL  NA+KFT   G V V V   + +         +
Sbjct: 447 VVSSAPEQAAHLVGDALRLEQVLLNLTGNAIKFTER-GEVEVRVELEAEQDGMATLLFRV 505

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI   +   +  +F Q   +      G GLGL I++ ++   GG   + S+L +G
Sbjct: 506 RDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKG 565

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491
            E    +   +V    PE  HE  Q+
Sbjct: 566 SEFWFRVRLEQV--ERPEAFHERLQH 589


>gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
 gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
          Length = 1758

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 134/250 (53%), Gaps = 10/250 (4%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  +D   ++AE  N AK  FL ++SHELRTP+N +L  ++++E  T+      T K
Sbjct: 818  RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 873

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E++  I  SG +LL+LIN+ILD S+IEAG+ E+ +   S++ ++   I ++     EK +
Sbjct: 874  EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNGIRIVSKNIYEKGL 933

Query: 349  EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
            E+   +DP++  +   D + ++Q++LN LSN++KFT   G++ + V   S         I
Sbjct: 934  ELCVFVDPNVPVIINGDGRRIKQILLNFLSNSIKFTNE-GQIIIRVKLESENEKESLIKI 992

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             ++D+G GI    +  +  SF Q         QG GLGL I++ +    GG   ++S+  
Sbjct: 993  DVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVHVKSEFG 1052

Query: 464  EGVEVIAILP 473
             G      +P
Sbjct: 1053 IGSTFSFTIP 1062


>gi|325288684|ref|YP_004264865.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964085|gb|ADY54864.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 584

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHELRTP++ I G++E +        +     +++  I      L  L
Sbjct: 356 LEQMRRDFVANVSHELRTPISLIQGYAEALADHVED--SPVQQDQFMKIIIEESNRLKRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L+LSR+++G+ +L +  I+L  +  +          ++NI+   +I+    +VWAD
Sbjct: 414 VEDLLELSRLQSGKADLEKEEINLFQVSEQVKEKYDQLFIQRNIKFKAEINQDAGTVWAD 473

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +    Q++LNL+ NA+ +   GG + +T   T      + + D G GI+E ++P +   F
Sbjct: 474 KFMFEQIVLNLIDNAICYAP-GGTITLTSARTQKG-IELCLSDTGKGISEEDLPYLFERF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +      G GLGL I ++++  HGG   + S+  +G +     P
Sbjct: 532 YRADKSRNRESGGTGLGLSIVKNLVQAHGGIISVESEAGKGTKFSLKFP 580


>gi|269963147|ref|ZP_06177482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832111|gb|EEZ86235.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 827

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 21/306 (6%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELEV 230
            ++   L  +L        YI   + +   K                + E   LI +   
Sbjct: 296 GIIPFLLLCVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDIAYDSEDEIGHLITKFNE 355

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                +  R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  +++
Sbjct: 356 KTIYLERERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRKH 411

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  ++ SG H++ L+NEILD S+IE G  EL  +   +  I+     +      EK ++ 
Sbjct: 412 LNTLYDSGDHMMTLLNEILDYSKIEQGHIELDNTPFPIESILGSINSVYHTLCAEKGLQF 471

Query: 351 FQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIK 406
               + P       D+  +RQV+ NLL+NAVKFT   G V V +            IS+K
Sbjct: 472 RIISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GFVEVELAEHVQNDKTKLTISVK 530

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI       +   F Q   +      G GLGL I + I  + GG   ++S+   G 
Sbjct: 531 DTGIGINPDAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQISEHMGGGITVQSQECIGT 590

Query: 467 EVIAIL 472
           + +  L
Sbjct: 591 KFVVEL 596


>gi|156974588|ref|YP_001445495.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116]
 gi|156526182|gb|ABU71268.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116]
          Length = 576

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L   +EV  S   + R+ AE  N +K  FLA MSHE+RTPL
Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKPEFLAMMSHEIRTPL 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++LG  +++   T+     E+  E +  +  S   LL +I++ILDLS+IE+  + LSE 
Sbjct: 231 NSVLGMLDILRQSTL----TESQSEVLNQMECSADLLLAIISDILDLSKIESVSFRLSEQ 286

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +L D V   I   +  A  KN+    + +  +    W D   + QV+ NL+ NA KFT
Sbjct: 287 WTNLRDAVTLVISQQKQVAISKNLSFEYQCNLDNNKQYWIDSTRLSQVLFNLIGNASKFT 346

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG ++V+V         IS+ D G GI + +I  + T+F QG  +I     G GLGL 
Sbjct: 347 DFGG-INVSV-IERDGELVISVVDTGIGIPQSKIGHLFTAFHQGDSSITRRFGGTGLGLA 404

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP---EDNHES 488
           I + ++    G   ++S+   G      +P  TR     P   E NH S
Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRPVKIEPNHPS 453


>gi|71016304|ref|XP_758886.1| hypothetical protein UM02739.1 [Ustilago maydis 521]
 gi|46098317|gb|EAK83550.1| hypothetical protein UM02739.1 [Ustilago maydis 521]
          Length = 1356

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 141/282 (50%), Gaps = 11/282 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++ S + + + ++  L  +   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G + 
Sbjct: 817  EMDSLKTKINQMVYSLRDSIQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTA 876

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +     +    + + +E +  +     +LL +I++ILD+S+IEAGR  + E   SL  IV
Sbjct: 877  LTLETEL----SRSQRENLVTVSTLAGNLLAIIDDILDISKIEAGRMNVEEIPFSLRGIV 932

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               +  L +RA +K + +  ++ P     +  D   ++Q+I NL+ NAVKFT  GGRV +
Sbjct: 933  FSVLKTLSVRATQKKLNLMYEVAPDCPDPLIGDALRLKQIITNLIGNAVKFTDAGGRVAL 992

Query: 392  TVGWTS---GRGQYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                +         +     D+G GI + ++  +  +F Q   +      G GLGL I++
Sbjct: 993  KCKLSKMVGSNQAMLEFCASDSGIGIKQDKLDVIFDTFCQADGSTTRKYGGTGLGLSISR 1052

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             ++   GG   +RS   +G +    +   ++    P+   E 
Sbjct: 1053 RLVNLMGGDLWVRSNYGKGSDFFFTM-VVKLDQISPDQVKEK 1093


>gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
 gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
          Length = 826

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 6/262 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+    + +  A+  N AK+ FL ++SHELRTP+NAILGFS++++L+    +
Sbjct: 322 REITMRKKAEEEIIKAKLEADSANQAKTEFLTNVSHELRTPMNAILGFSQLLKLKL--KV 379

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           ++    EYI  I+ +   LL+LINE+LD+++ EAG+ EL+    S+   + E I +   +
Sbjct: 380 DDPLIYEYIDTIYNNSNILLSLINELLDINQAEAGKIELNYCGFSVRQFLGETIKLFSSQ 439

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSG 398
             +K + +   I+ ++   +  D   +RQ+++NL+SN++KFT  G     + +   + + 
Sbjct: 440 LSKKTVNLLIDIEDNVPKFINFDSLRLRQILINLISNSLKFTTKGHIKILISIQELYLNS 499

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D G GI + +   +   F Q          G GLGL I Q I    GG   +
Sbjct: 500 CTLKIFVEDTGIGIKDEDKERIFQVFTQSKGQDNYRYGGNGLGLFITQKITECLGGTITL 559

Query: 459 RSKLREGVEVIAILPNTRVLNF 480
            S+  +G     I PN  +L+ 
Sbjct: 560 ESEWGKGSTFTIIFPNVEILDS 581


>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 705

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 12/267 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +  AE  N AKS FLA+MSHE+RTPLN +LG  +++E        +
Sbjct: 309 ITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETT----DTS 364

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + YI    RSG  L  L+++ILDLSRIEAGR  LSE   +L +            + 
Sbjct: 365 DEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVSI 424

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SG 398
           +K + +   + P +   V+ DE  +RQV+ NL+ NA+KFT   G V + V          
Sbjct: 425 QKRLPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFTDQ-GEVRIEVSTLLPLPPDT 483

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G G+++  + T+   F Q S       QG GLGL I + ++A  GG    
Sbjct: 484 VRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLTF 543

Query: 459 RSKLREGVEVIAILPNT-RVLNFIPED 484
            S L  G     +LP   R  + +P+ 
Sbjct: 544 ESTLGAGTAAYLMLPFRWRAYSILPDQ 570


>gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1424

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/410 (23%), Positives = 168/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  + V ++  G       L          L I     +L  + +
Sbjct: 692  RIPVGRSLVGQAARNRRSVTVEELPEGYVSISSGLGHAAPTALVVLPIVVEEQVLGVIEL 751

Query: 152  SALSNFM-LPYAVFLSFFPVVVALSTQAIMSMHVLDIS-----LAGMLATALSFFTYITY 205
            +++S F  +         P +       + ++   ++      L   L            
Sbjct: 752  ASVSRFRKIHQDFLAQLMPTIGVNLNTIVANVRTDELLDESQRLTAELQARSEELQVQQD 811

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++    +       ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 812  ELQRSNAELEEKASLLASQNRDIEAKNLQIEQARQELETRAQQLSLASKYKSEFLANMSH 871

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 872  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 930

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +++   + L  ++       +    +K++E      P   + +  D+  +RQ++ NLLS
Sbjct: 931  MDVAPERVPLRQLLEYVEATFRPMTTQKSLEFTVATAPGTPADLLTDDSRLRQILRNLLS 990

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V + +   + R                +KD G GI + ++ T+  +F Q
Sbjct: 991  NAVKFTEQGG-VELRIEPAADREVPSGVHRGGPIVAFRVKDTGIGIPQQQLETIFGAFQQ 1049

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG   + S   +G      LP  R
Sbjct: 1050 ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVAR 1099


>gi|16904238|gb|AAL30826.1|AF435964_1 two-component osmosensing histidine kinase BOS1p [Botryotinia
           fuckeliana]
          Length = 1315

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  ++D S+   V  D   +RQVILNL+ NA+KFT   G V +
Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866

Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                  + D G GI   ++  +  +F Q   ++     G GLGL I
Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++    G   ++S+  +G      
Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1364

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   GG+  + S    G E   ++   +  +  P+   E
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SAPPQAQRE 881


>gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 906

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 4/313 (1%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
            +     V  A    A          L   +A           H+ K++ ++++   +  
Sbjct: 595 AYADPRLVAYAEKWLAGAIGTASARILVSSVANEEPLSVDEVIHILKASQELMTVNKKLT 654

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              AEL+          +R ++ +  K  F+++++HE+RTPL +I   SE++  +    +
Sbjct: 655 RKSAELQQMTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQA--DM 712

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    +E++  + R  + L  LIN++LDL R ++GRY LS   IS++D+V E +  +   
Sbjct: 713 DESMRQEFLSRVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQL 772

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401
           A++K + +      +   V  D   + QV++NLLSNA+KF+  G G V V +        
Sbjct: 773 ARDKQVTLEICPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIR-DERV 831

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ++++DNG GI       +   F Q +       +G GLGL I + I+A H GQ  + S 
Sbjct: 832 NLTVRDNGIGIEPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSV 891

Query: 462 LREGVEVIAILPN 474
             EG E    LP 
Sbjct: 892 PGEGAEFTCSLPA 904


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R EE       F+A++SHEL+TP+ +I  ++E +    +   +  T   ++  I+    
Sbjct: 370 RRLEELRR---DFVANVSHELKTPITSIKSYTETLLDGAIDDKDTAT--SFLTVINNESD 424

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            + N+I ++L LS ++  +     +   +  + ++CI+ + L A  KN +I  +I     
Sbjct: 425 RMNNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYADMKNQKIVGEISNDKL 484

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  D+    QVI+NL+SNA+K+T   G + V   + +    +IS+ D+G GI E ++P 
Sbjct: 485 PVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKT-FVNDGKCHISVTDDGIGIPEKDLPF 543

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +       +  G GLGL I +SI+A HGG   + S   EG     I+P
Sbjct: 544 IFDRFYRVDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597


>gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 862

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+E + A+   +  +K+AE  N AKS FLA+MSHE+RTPLN +LG  +++ +  +   
Sbjct: 454 RDISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEIRTPLNGLLGMLQLVRMGDL--- 510

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +    +Y+     SG+ LL +IN+ILDLS+IE+G++EL+    ++  +V+      +  
Sbjct: 511 -DAERSQYLDVAMNSGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETFRFP 569

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A+ K +E+  + D  +   + AD+  +RQ++ NL+ NAVKFT   G + +++       +
Sbjct: 570 ARSKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAVKFTLA-GEIRISLSMPFQTGN 628

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I + D G GI   +   +   F Q S A K+   G GLGL I + I+   GG+  
Sbjct: 629 RGQMEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGSGTGLGLSIVKRIVGFMGGRVR 688

Query: 458 IRSKLREGVEVIAI 471
           + S   EG  +   
Sbjct: 689 LDSTPGEGTTLTVS 702



 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 57/199 (28%), Gaps = 2/199 (1%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
           +R++  L   S   ++  +    L +A    +        +     L +++    L    
Sbjct: 24  ERQLEFLVTNSRVSIAANVFNGSLFLA--FLYGHLPTFELLLWYGALVLFSVPRLLVVFF 81

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
            +       V  W   L +G +  G+ W L   +      P     +           + 
Sbjct: 82  FHRLRARLSVVQWSRVLALGTLCSGIIWGLSAPLFFAKLPPLGQAFHILLVGGTLTGAAV 141

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
               +LP  V  +    +         +       +A +     +    + +   +   +
Sbjct: 142 YLAHLLPNFVLFAIPQALPMQIILMTQAGDPFFRGMALLFFIFTAMMFIMAFRTNRQFAR 201

Query: 214 ILSCQAEKDDLIAELEVAK 232
               Q   D L+ +L  ++
Sbjct: 202 YTLLQLRNDALMEKLNESE 220


>gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1424

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/412 (24%), Positives = 168/412 (40%), Gaps = 27/412 (6%)

Query: 91   KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
             ++      +G+    R  + V  +          L +      + L I     +L  + 
Sbjct: 691  DRIPLGRSLVGQAARNRRPITVDDLPPAYVTISSGLGQISPTALKVLPIVVDEQVLGVIE 750

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYIT 204
            +++++ F   +  FL      + ++   I++    D  L                     
Sbjct: 751  LASVTRFTQIHEDFLGQLMETIGVNVNTIVANGRTDELLGESQRLTAELQSRSEELQVQQ 810

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
              L +SN ++            ++E      ++ R+  E         +  KS FLA+MS
Sbjct: 811  DELQRSNAELEEKATLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMS 870

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG
Sbjct: 871  HELRTPLNSLLILAQLLAQNPSHNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAG 929

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            + ++S   ++L  ++       +    +K++E      P +   +  D+  +RQV+ NLL
Sbjct: 930  KMDISPERVALRRLLDYVEATFRPMTSQKSLEFTMSTAPGVPVDLLTDDSRLRQVLRNLL 989

Query: 377  SNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFG 425
            SNAVKFT  GG V + +     +                +KD G GI E ++ T+  +F 
Sbjct: 990  SNAVKFTERGG-VGLHIEPAVDQNIPAAVHRGGAVVAFHVKDTGIGIPEQQLETIFGAFQ 1048

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            Q          G GLGL I + I    GG   + S   +G      LP  R 
Sbjct: 1049 QADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVARA 1100


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 2/242 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E     +  F+A++SHEL+TPL  +  + E +        + E    ++  +    + 
Sbjct: 356 ELERLESMRREFVANVSHELKTPLTTVKSYVETLLDGA--ADDPEVRDRFLRVVDGETER 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++L L++++ G    +     + ++V E +  L+++A  K + +  ++DP    
Sbjct: 414 MARLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPP 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   ++QV++NLL+NA++FT  GG++ V+V         ++I D G GI   ++P +
Sbjct: 474 ALCDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLPRI 533

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   +  G GLGL IA+ I+   GG   I S++  G  V   LP  R    
Sbjct: 534 FERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLPAARTAEV 593

Query: 481 IP 482
            P
Sbjct: 594 RP 595


>gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
 gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
          Length = 499

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 130/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI+++LDLS+IE+   + + +  SL  ++ +     Q    
Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKE-QAMKP 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI          +  D   ++QV+ N ++NA KFT   G +H    V   +     
Sbjct: 367 ISEIEIRASFPNEDVYINTDATRLKQVVCNFINNARKFTEK-GYIHFGYAVDPVNADSVN 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 426 IFVEDTGSGIPQECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVESEM 481

Query: 463 REGVEVIAILPNTR 476
            +G   I  LP  R
Sbjct: 482 GKGSRFIVTLPFER 495


>gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 780

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                   L  +  A LL+         F +  +  L+                 +    
Sbjct: 286 LQHTGHLSLMYWLFALLLLVGGAGMTIWFSMSISRPLNALSKSFDEIASGNFDQRIDVFG 345

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
            + +   A  F           +      +    +L      A+ L+D     AEE N+A
Sbjct: 346 NSELDDLARVFNDMADRLSRSYSEVEEQVRKRTRELQKATMKARKLAD----AAEEANMA 401

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN+I+GFS++++   +    ++     +  I  SG  LL LIN+I
Sbjct: 402 KSAFLATMSHEIRTPLNSIIGFSDMLQETEL----DDEQCSDLEAIRSSGALLLELINDI 457

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LDLS+IEAG+  L+  ++ L + V+E   + +   ++K +E+  +    L   V  D+  
Sbjct: 458 LDLSKIEAGKSNLNAVSLDLEETVQEVSSLFKHGLRKKGVELEVEFAEDLPQFVTTDKLR 517

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422
           ++Q++ NLLSNAVKFT+  G +HV   +   +       Y+++ D G GI E ++  V  
Sbjct: 518 LQQLLNNLLSNAVKFTSK-GIIHVRAWYEDRKEPEGPRYYVAVSDTGIGIPEHKLEEVFQ 576

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + I    GG+  + S+   G       
Sbjct: 577 AFTQADSSTTREYGGTGLGLAICKRITHLMGGEISVVSRAGLGSTFKFYF 626


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GFSE +    M   +    ++++  IH+  + 
Sbjct: 355 ELKKLEQVRKDFVANVSHELKTPVTSIKGFSETLLDGAMA--DPAYMEKFLTIIHKESER 412

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI ++L+LS++E   + L+     L  IV++ + +L+ +A+ K I +      S+  
Sbjct: 413 LQSLIQDLLELSKLEQHYFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASSV-E 471

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D + ++QV +NL+SNA+ +T   G ++V+V     +    ++ DNG GI   E+P +
Sbjct: 472 MDGDSERLKQVAINLISNAITYTPNHGEINVSVTQ-DHQSILFTVSDNGIGIESSELPRI 530

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + ++  H G+  + S+L  G       
Sbjct: 531 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFTIHF 582


>gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 811

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229
             ++   L  +L        YI   + +   KI                 E   LI +  
Sbjct: 279 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSDDEIGQLIEKFN 338

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A+    AK+ FLA++SHE+RTP+N +LG ++++    +     +  ++
Sbjct: 339 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 394

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  ++ SG H++ L+NEILD S+IE G  E       +  I+     + Q    EK + 
Sbjct: 395 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLR 454

Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405
                  P+      D+  +RQV+ NLL+NAVKFT   G V V +      +G    + +
Sbjct: 455 FRVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELAEQSSKAGTKLILKV 513

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI++     +   F Q   +      G GLGL I + I  + GGQ ++ S+   G
Sbjct: 514 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAG 573

Query: 466 VEVIAIL 472
                 +
Sbjct: 574 TTFTVEI 580


>gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
 gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
          Length = 478

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 162/425 (38%), Gaps = 17/425 (4%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111
             L       +  ++   P+     L  +     +  L                     L
Sbjct: 61  RLLIFASALVLAAYYYSAPLAKFILLFVVISEICDYWL---FNRILKSKEVSTQAARRFL 117

Query: 112 VGQIAIGLCWTLLTLVEPGTW----TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
              + +    +  T++         T           L  A   SA+++  +   +  +F
Sbjct: 118 P-HLYLSAFLSTFTIIAYSVGIVVVTGPTNHFVPLFFLFAAALFSAMNSHYIKQVL--TF 174

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             V + ++   I    ++ +            F  I + L+          +     +A+
Sbjct: 175 RLVCLGIAFLFIPVRDIVIMEAPLQSELWAQLFISI-FALYFIVESARGYLSVYRAQLAQ 233

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+ +   +++R        AKS F+++MSHELRTPL +I G  ++ +   +G   ++  
Sbjct: 234 MELLRKEHEKSR----AAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGK-TSKNV 288

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              +    R+   LL LI++ILD    E+G+         L++++ +    ++  A EK 
Sbjct: 289 SAALKMAQRNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKG 348

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +  +       +  D++ ++QVI N+L+NA+ F+     + V +  T      I  +D
Sbjct: 349 ISLRSEFPDREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFL-QTDNGKVRILFRD 407

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++E +   V   F Q   +   +  G GLGL +++ I+  HGG          G  
Sbjct: 408 TGIGLSESDEARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTT 467

Query: 468 VIAIL 472
            +  L
Sbjct: 468 FVVEL 472


>gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 936

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/294 (28%), Positives = 141/294 (47%), Gaps = 23/294 (7%)

Query: 214 ILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   +EK DL+ +    ++  S  +    ++E+LAKS+FLA + HELRTPLNA+ G + 
Sbjct: 237 LIQTLSEKQDLLDQQHLSSEQESQTSLHLLQQESLAKSQFLAMVGHELRTPLNAVTGMTG 296

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    +        +E+I  I  SG+ LL +IN ILD ++IEA + EL E+   L   +
Sbjct: 297 LLLDTKLTN----QQREFINIIRNSGETLLTMINNILDFAKIEANKLELEETPFELGQSI 352

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E + +   +A E+ +E+   I+P    ++  D   ++Q+++NLLSNAVKFT   G V V
Sbjct: 353 EEALHLFVPQASERKLELAYLIEPHTPNAIIGDVTRLKQILVNLLSNAVKFT-ESGEVVV 411

Query: 392 TVGWTSGR---------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            V  T                      ++KD+G GI   ++  +  SF Q   +      
Sbjct: 412 YVNATPVTQHPVTPQKDKSSPLYEIRFAVKDSGIGIPREKMDRLFKSFSQVDASTSRKYG 471

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           G GLGL I++ +    GG+    S   +G      +   +        N  S +
Sbjct: 472 GTGLGLAISKRLTEMMGGKMWFHSVEGKGSTFYFTV-IAQAAPSSSLANSPSAE 524


>gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
 gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
          Length = 1345

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 142/279 (50%), Gaps = 23/279 (8%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + A+    + +++AE+   AKS FLA+MSHE+RTP+NAILG   ++E +++ P +    +
Sbjct: 594 KQAEEALVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLSPTS----R 649

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  IH +G+ LL +IN++LD S+IEA    + +    L D++     ++      K +
Sbjct: 650 EMVQKIHAAGKTLLTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPL 709

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QY 402
           E+     P  +  +  D   + QV++NL SNA+KFT   G V V V      G       
Sbjct: 710 ELVVGPPPDGANYLIGDRLRLGQVLVNLASNAIKFTGQ-GEVEVRVDRLPDTGNGRVMLR 768

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S++D G GIA  +   +  +F Q   +   +  G GLGL I++ ++A  GG+  + S  
Sbjct: 769 FSVRDTGIGIAPDKQEMIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAP 828

Query: 463 REGVEVIAILPNT---RVLNFIPE---------DNHEST 489
            +G      LP      + + +P+         D+HE+T
Sbjct: 829 GQGSNFHFELPFELSNPMDSALPDMAHLRVLIADDHEAT 867


>gi|323486812|ref|ZP_08092130.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
 gi|323399825|gb|EGA92205.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
          Length = 1032

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 138/260 (53%), Gaps = 10/260 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + RA+  + AK+ FL+ MSHE+RTP+NAI+G + +         N E   E +  +  S 
Sbjct: 642 KARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS---AAGNKEQVLECLEKLDNSS 698

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           ++LL+L+N+ILD+SRIE+G+ EL+ + + L   +     M++++ + K +    + D   
Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQTEAKGLSFTIQNDCRT 758

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
              + AD+  + QV+LNL+ NA+KFT +GG + + +              S+ D G GI+
Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471
              +P++  +F QG+  I S   G GLGL I+  ++   GG   ++S+   G E      
Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878

Query: 472 LPNTRVLNFIPEDNHESTQY 491
           LP + V     E  +ES  Y
Sbjct: 879 LPYSEVPAPQHEILNESPSY 898


>gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1351

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 38/317 (11%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +       + ++L   A+      E +       E R  A     AKS FLA+MSHE+RT
Sbjct: 624 LNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSEARDEALAATRAKSEFLATMSHEIRT 683

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NA++G + ++    +  +     ++++  I  S   LL+LIN+ILD S+IE+G+ +L 
Sbjct: 684 PMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLE 739

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
               SL   + E + +L  +A  K++E+   ID      V  D   +RQ+++NLLSNAVK
Sbjct: 740 AFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVK 799

Query: 382 FTAIGGRVHVTVG---------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           FTA  G V V+V                +++     +++ D G GI    +  +  SF Q
Sbjct: 800 FTAR-GEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQ 858

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-----------------KLREGVEVI 469
              +      G GLGL I+Q +    GG+  + S                    +G    
Sbjct: 859 VDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFY 918

Query: 470 AILPNTRVLNFIPEDNH 486
             +      N +P+ NH
Sbjct: 919 FSIVVQSSQNLLPQWNH 935


>gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 678

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 6/257 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E+    A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++ +  
Sbjct: 269 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 328

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +   +K  I  I RS +  ++LI+++LD+S I +G+  L    + L D++      
Sbjct: 329 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 385

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++  A++KNI I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + ++V     
Sbjct: 386 IEPMARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPE 444

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI    +P +   F Q  ++      G+GLGL IA+ ++  H G+   
Sbjct: 445 GVVA-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITA 503

Query: 459 RSK-LREGVEVIAILPN 474
            S     G  +   LP 
Sbjct: 504 ASSGADRGTTMAVSLPL 520


>gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5]
 gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG
 gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis]
 gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           BSn5]
          Length = 611

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      ++       + ++
Sbjct: 371 EKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I ++  +   I   ++  +E+++E  + +      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  ++         YIS+KD G GI + ++  V 
Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G  +   LP
Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 599


>gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 1021

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 14/273 (5%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F       + +     +  +AE   LI  L V + ++ E      E +  KS F++++SH
Sbjct: 569 FNAVQENRVLRVWTGPVLDRAEN--LIGRLYVFRDITIEA-----EVDRMKSEFVSTVSH 621

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL++ILGFSE++    +  L+ E   +Y   IH+  + L +L+N+ LDL R+E G+
Sbjct: 622 ELRTPLSSILGFSELLL---IKKLSEEARTKYTKTIHKEAKRLTDLVNDFLDLQRMELGK 678

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
               +     +D++ E +        + +I +          + AD++ + QV++NLLSN
Sbjct: 679 QVYDKEDFIALDLLAEVVESFAASGVDHDITLQTV---ERFFINADKERVTQVLINLLSN 735

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           AVKF+  G ++ + V           IKD G GI +     + + F +   + +    G 
Sbjct: 736 AVKFSPKGTKITLGVTPDEE-YAKFFIKDQGLGIPKDVQDNLFSKFYRVDNSDRRKIGGT 794

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I + I+  HGG+  + S+   G      
Sbjct: 795 GLGLSICKEIVEAHGGKIWVESEHGHGSVFYFT 827


>gi|221233697|ref|YP_002516133.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|220962869|gb|ACL94225.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 566

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 165/453 (36%), Gaps = 40/453 (8%)

Query: 31  MDFDREIITLHVESLFRVSP---ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANL 87
             F   +         R  P   +        A I           +W L   +  AA  
Sbjct: 2   PRFAEWLDQDVTSVTARSLPTLGVRLAICAATALIYALAVDLQGGLLWGLAVASAEAAVF 61

Query: 88  SLGK--KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
                 +          +       +     + + W  L ++      P           
Sbjct: 62  ICSSPQRADRKISHAQRLS-----YVAAVAWMNIVWWSLAIMLWRQDHPALRMAALCVVC 116

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
              +   A +       + +      + L    +++       LA   A  +        
Sbjct: 117 AFLVHAQAFTARSKTLLLIVGGGSATLLLVLCGVLNDFPPSERLALCAAAIILIIYTAKA 176

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                                         +  + +AE  + AKS FLA MSHELRTPLN
Sbjct: 177 AQTNG-------------------QQGRALELAKSQAEAASQAKSEFLALMSHELRTPLN 217

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG S+ ++LE + P      +E +  +  SG+ LL L+N++LD+++IEAG+ +++ + 
Sbjct: 218 GMLGLSQALKLEPLEPGE----REQVELLEESGRTLLALLNDVLDMAKIEAGKLDIAPTQ 273

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
             L  +    + + Q +A+EK  EI  +IDP+    +  D   +RQ + NL+SNAVKFT 
Sbjct: 274 EDLSRLAERVVRINQAQAREKGTEITLEIDPATPRALLFDPLRVRQCLGNLVSNAVKFTP 333

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             G++ V V   +G         I + D G G+    +  + T F Q    I     G G
Sbjct: 334 A-GQIRVRVTCEAGDQPDRMLAKIIVSDTGVGMGPAVLARIFTPFEQADPTIARRTGGTG 392

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I + +    GG   +RS   +G       
Sbjct: 393 LGLNITRRLAQMMGGSVSVRSTEGKGSTFTLTF 425


>gi|330875680|gb|EGH09829.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 641

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 140/338 (41%), Gaps = 21/338 (6%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                    P+         +           +  +  +    +  H+      +     
Sbjct: 184 RRLALSLSRPISAMGEALKAIQHGDYH---TPLPISDDAELGALARHINNLAENLHRASL 240

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E        + + +   + R+ AE+ N AKS FLA MSHELRTP+N +LG  +++E   M
Sbjct: 241 E-------QQRSVAQLIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM 293

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                    EY      S +HLL +IN+ILD SRIE    ++   A +L ++V       
Sbjct: 294 TS----EQSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAF 349

Query: 340 QLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
              A ++ + +   I P L    V  D   +RQ+++NL+ NA+KFT   G V V   W  
Sbjct: 350 NHSALQRKLTLKLHIQPGLEALMVVGDPTRIRQILVNLIGNALKFTEQ-GNVCVEAEWAM 408

Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                   +  + D+G GI    + ++  +F Q   +I     G GLGLPIA+ +    G
Sbjct: 409 LDNDHLRFTCTVHDSGIGIEADRLESMFDAFRQADSSISRRYGGTGLGLPIARQLAERMG 468

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           G    +S+   G      +P     N + + + + + +
Sbjct: 469 GTLRAQSQEGSGSVFTLQIPLAVSRNVLADVSEQPSTF 506


>gi|307822393|ref|ZP_07652625.1| histidine kinase [Methylobacter tundripaludum SV96]
 gi|307736959|gb|EFO07804.1| histidine kinase [Methylobacter tundripaludum SV96]
          Length = 673

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 13/326 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
            +   +P+ V  +   +  M  L I++  + A    FF Y    L    +     Q   +
Sbjct: 125 AYTWIYPLKVGSTVIGVFKMESLHIAMRDLYAQLPLFFNYAALVLKNEILGYTRLQNVNN 184

Query: 223 DLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L  E    +  +      +  AE  N AKS FLA+MSHELRTP+NA+LGFS++++    
Sbjct: 185 LLQQEIIIRKQTEQKLLAAKNEAEAANRAKSIFLANMSHELRTPMNAVLGFSQLMQK--- 241

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +   +E +  I+ SG+HLL LIN++LD+++IEAGR  +      L  ++R+ I M+
Sbjct: 242 DSDLSPEQRETLNIINNSGKHLLELINDVLDMAKIEAGRVIVENGNFDLGALIRDTIDMM 301

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTS 397
             RA+ K +E+F     S    V +DE   RQ++LNL+ NA+K+T  G  +  +T     
Sbjct: 302 HQRAEAKGLELFLDQSSSFPRFVNSDEAKFRQILLNLVGNAIKYTQKGRVIVLLTAENLP 361

Query: 398 GRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              Q +    IKD G GIA+ ++P +  +F Q     +S +QG GLGL I +      GG
Sbjct: 362 DTQQCLLICEIKDTGIGIAKQDLPFIFDTFVQV--GRESDQQGSGLGLRITKQYAELMGG 419

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480
           Q  + S+L +G   I  LP  +V   
Sbjct: 420 QVTVTSELNKGSSFILTLPAAKVDQS 445


>gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 346

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 3/227 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +S F+ ++SHELRTPL +I GF E +    M   N++T + ++  I      L  LI
Sbjct: 120 DQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAM--ENSDTCRRFLSIIDTETNRLTRLI 177

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L LS IE+    +      L+  +R  + M   +  EK++ +       +  + ADE
Sbjct: 178 EDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPYPMPLIQADE 237

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV +NLL NA+K+T   G++ +       R    ++KD+G GI    +P V   F 
Sbjct: 238 DLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDSRIIT-TVKDSGMGIPHESLPRVFERFY 296

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   A    + G GLGL I + I+ +HGG+  + S++ +G       
Sbjct: 297 RVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGVSF 343


>gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 841

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 4/260 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E   A+  + E R  AEE    KS F+A+MSHELRTPL +I+GF+E+     +    N
Sbjct: 584 VSEFRAAEHATHEARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GGLRSHGN 640

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E   DIH +GQ +L L+N++LD++++E+    +      L  ++R  +  L+ + Q
Sbjct: 641 AAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRSLIRPVVRELEPQQQ 700

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K I++  ++D +     AD    +QV+ N+L+NA+KF+ IGGR+ V           I+
Sbjct: 701 HKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDGQGDICIA 760

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D GPGI   E+  +   F Q S   K+   G GLGL I + I+    G  +  +    
Sbjct: 761 VSDQGPGIPPQELDKIFQPFVQSSK-TKNGSGGTGLGLAICRKIIDAMDGTIVASNGPAG 819

Query: 465 GVEVIAILPNTRVLNFIPED 484
           G      LP    +   P +
Sbjct: 820 GAMFCITLPTRNAMETRPAE 839


>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
 gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
          Length = 1381

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/355 (23%), Positives = 133/355 (37%), Gaps = 9/355 (2%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L+         P                  AL+                +          
Sbjct: 220 LVEATGLAAGHPAAPATLSLGDPAAPWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPA 279

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRK 240
             L + L         F        +++         E     L   +  A+S   + R+
Sbjct: 280 EALLVPLRQQGGAPYGFLVAGLNR-YRALDDGYRGFVELTAGHLATGIASARSYQAQQRR 338

Query: 241 RAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             E  E + AK+ F +++SHE RTPL  I+G  + +     G   +E  +  +  I R+G
Sbjct: 339 AEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELRGRLQGA--DEQVRTELDVIRRNG 396

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L NL+N +LD SRIEAGR +     + L  +  +   + +   +   +       P  
Sbjct: 397 LRLGNLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGLSFEVDCPPLP 456

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D     +V+LNLLSNA+KFT   G + V +    G    + I D G G+   E+P
Sbjct: 457 EPVHLDRGMWEKVVLNLLSNALKFTFD-GTIRVEL-RADGDAAVLRISDTGIGVPADEMP 514

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   A   +++G G+GL + Q ++  HGG     S +  G      LP
Sbjct: 515 RLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFTIRLP 569


>gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two
           component regulatory system, activates OmpR [Yersinia
           pseudotuberculosis IP 32953]
          Length = 942

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|154244942|ref|YP_001415900.1| integral membrane sensor hybrid histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159027|gb|ABS66243.1| integral membrane sensor hybrid histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 662

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 194/504 (38%), Gaps = 38/504 (7%)

Query: 2   YRSRKNKEKDVGLLISPTGDHLGLEYPS--------------KMDFDREIITLHVESLFR 47
           Y+ R+    +  + +  +   L                           + +  ++ LFR
Sbjct: 32  YKRRRLSRSEATVTLQRSILSLPPGATPLPSGKPDLRERALEPAAAHDRVQSEQLKVLFR 91

Query: 48  VSPILPLFVLLVANIGTWFTQNP------IFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
            +P+  L  ++   I  +               WS I +AV  ++L L        +   
Sbjct: 92  NTPVGVLGAMIGGLILAYVLLLHDGVSFDTVATWSAILVAVALSHLVLCWIYWRVAL-PA 150

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            + +  +      +  G+ W   +++       E        T  +A   ++     LP 
Sbjct: 151 RLPMLALIFTAISLMEGITWGTGSVLLVSPSRIELQLWVMIVTSAVASGAASAFGSYLP- 209

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A +   FP ++     A++   +L  +L  +    +     + +   +  V+ L  + E 
Sbjct: 210 AFYALLFPAMLPYPVWAVLHGGILSHALMVLDLLYVVAMAALGWRSNRGLVEALRLRFEN 269

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL+ E+          ++RAE+ +  KSRFLA+ SH+LR P++A+  F   ++   +  
Sbjct: 270 IDLLVEVRN-------EKERAEQASRDKSRFLAAASHDLRQPVHALTMFLGAMQNCNLDA 322

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 ++ +G I  S   L  L   +LD+SR++AG  +    A  +  +V   +     
Sbjct: 323 PA----RQILGHIDESVSALDGLFTSLLDISRLDAGVVQSDSRAFHIQPLVERIVRDYDE 378

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A  K I +  +  P   +V AD   + +V+ NL+SNAV++T   GRV +      GR  
Sbjct: 379 EAARKGIALVVQ--PCSLAVMADPILLERVLRNLVSNAVRYTER-GRVLIGCRR--GRRL 433

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I + D G GI   E   +   + Q   A +    G+GLGL I + +         +RS+
Sbjct: 434 SIEVWDTGKGIPGEEQQRIFQEYYQLGNAERDRAMGLGLGLAIVKRLAELMACPLALRSQ 493

Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485
             +G      +P        P  +
Sbjct: 494 PGKGSVFAISVPLATSAPEQPAAS 517


>gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1005

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/401 (23%), Positives = 166/401 (41%), Gaps = 26/401 (6%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
            +  +        R  +    I +G     + L         +     +  L + L +S 
Sbjct: 102 ASGPVPSPAERQLRRPIRYIDIDLGQLEVTIDLRPFIADNLAHHRDLAALLLAMLLGLSG 161

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFFTYITYHLFKS 210
           +   +L  AV        +A++   +   H    L  +    +   +  F  +   L  S
Sbjct: 162 VMAALLELAVIRPT--HRLAIAAHELAQGHFDTPLPHTSHDEIGNLVDSFASMRSELQVS 219

Query: 211 NVKILSCQAEK----DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHE 259
             ++L    E+    + L    E  + +  E        +  AE  +  KS FLA+MSHE
Sbjct: 220 RSELLLEIDERKKAANALQEHQEQLEQIVSERTRELVIAKDAAESASRTKSAFLANMSHE 279

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G + ++  +T  P +     +++  I+ + QHLL++IN+ILD S+IEA + 
Sbjct: 280 IRTPMNAIVGLTHLLRRDTTTPKDA----KHLDKINLAAQHLLSIINDILDFSKIEADKL 335

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            + E+      I ++   ++  +A +K +E+  +IDP +   V  D   + Q++ N  SN
Sbjct: 336 IIDEADFEFEQIFQQLNTLITPQAMDKGLEVVDRIDPEIPAVVHGDAMRLGQILANFASN 395

Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           AVKFT   G +          G        I D G G+A  +   +   F Q   +    
Sbjct: 396 AVKFT-EHGSIVFRARLLEQIGNLLRIRFEITDTGIGLAPEQRDRLFLPFEQADTSTTRK 454

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             G GLGL I++ +     G+  + S   +G      LP  
Sbjct: 455 FGGTGLGLAISKRLTELMNGRIGVDSTPGQGSTFWCELPLQ 495


>gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 953

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 28/271 (10%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +   ++ +  AE  N ++  FLA+MSHE+RTP+ AILG +++++     P N 
Sbjct: 538 VDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLRDPDN- 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I R+G  LLN+IN+ILDLS+I++G+ +L    +    ++ E   ++ +RA 
Sbjct: 597 ---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRAS 653

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK++ +  + D  +   +  D   +RQ++LNL+ NA+KFT   G V + VG+     +  
Sbjct: 654 EKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDS-GEVKILVGYDGPGKRAA 712

Query: 402 --------------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
                                  I D G GI   +  ++   F Q       +  G GLG
Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLG 772

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I + +    GG   + S   +G +    +
Sbjct: 773 LAICRRLAHALGGDVSVESTYGKGSKFTLTI 803


>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
 gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
          Length = 999

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 26/311 (8%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSDETR 239
             + D  LA   A    F    T  + + +  I     +    +LI +   A++   ET 
Sbjct: 261 FTLEDHLLAIEKAGLFDFLDSGTDEISRESDLIYRKHQRTALLNLIEDANQARNELIETN 320

Query: 240 KRAEEENLA--------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           ++ EE                  KS+FLA+MSHE+RTP+N ++G ++++    +      
Sbjct: 321 RKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIRTPMNGVIGMADLLLETRLST---- 376

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + Y+  I+ SG++LL +IN+ILD S+IEA   EL      L D++ E   +L L A++
Sbjct: 377 DQRNYVEIINGSGRNLLKIINDILDFSKIEARMLELDAIDFDLFDLLEEICGVLGLEARD 436

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400
           K +E+       L  S+  D   +RQ+++NL+ NA++FT  GG V + V           
Sbjct: 437 KGLELLLITGFDLPFSLKGDPARIRQILVNLIGNALRFTPEGGEVVLKVMVQQQTDRNAV 496

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH-GGQFLIR 459
              +++D G GI+  ++  +   F Q   +      G GLGL I+  ++    GG   + 
Sbjct: 497 IRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFGGTGLGLSISNDLVLKMGGGGIHVE 556

Query: 460 SKLREGVEVIA 470
           S+   G     
Sbjct: 557 SEPGSGASFWF 567


>gi|89902167|ref|YP_524638.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346904|gb|ABD71107.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1202

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 192/475 (40%), Gaps = 49/475 (10%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            + I      + A +  W TQ   +        A  A      K+       I E     
Sbjct: 495 SALIALGTAFVAAPLIAWATQGRYYMARQSAAPAGGAVGEGACKRYQVQRCVICERQYEG 554

Query: 108 IWLLVGQIAIGLC------------------------W-TLLTLVEP-------GTWTPE 135
             +       G                          W   L  + P             
Sbjct: 555 PDMAHCPAYQGAICSLCCTLDARCGDLCKPHASLSSQWSATLRWLLPRRSWSYLDNGLGY 614

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
           +L +      L+A     L +  L          V +     A+ S          ++A 
Sbjct: 615 FLLLMGVTVPLLASVFGLLYHQELRALTLSVTDIVQLQAPHAALRSGFFKAYMALLVIAG 674

Query: 196 ALSFFTYITYHLFKSNVKILSCQA--------EKDDLIAELEVAKSLSDETRKRAEEENL 247
            ++++  + +   +   +  + Q                 L+ A+ ++++ R  A++ N 
Sbjct: 675 LVAWWVVLAHKSRQVAQEESNRQTHLLMCEIESHRQTDEALQTARRVAEQARHAADQANQ 734

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKSR+++++SHELRTPLN+ILG+++++  +   P++    ++ +  I R G+HLL+LI  
Sbjct: 735 AKSRYISAISHELRTPLNSILGYAQLMGEDPSIPVH---RQQAVSVIKRGGEHLLSLIEG 791

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            LD++ IE+G+  L+   +    ++++   + +L AQ K +        +L   V ADEK
Sbjct: 792 TLDIAHIESGKLTLNPRPMHFASLMQDIASLFELEAQAKGLSFRYVEGAALPAVVRADEK 851

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +RQ+++NLL NA+KFT   G+V   + + +     I I+D GPG++  E+  +   F +
Sbjct: 852 RVRQILINLLGNAIKFTQK-GQVTFDIRY-AREMAVIDIEDTGPGLSPQELNRIFEPFTR 909

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479
                 +A  G GLGL IA+ +    GG+  + S    G        LP  RV +
Sbjct: 910 AHTPGATAS-GSGLGLTIAKMLTDLMGGELTVTSTPGMGSVFKVKLFLPEVRVTS 963


>gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 546

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 4/287 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   ++       H   ++ +++    ++  L            +   RAE  N AKS F
Sbjct: 249 ILGVITLGHREVGHFRSTHTELMQAAGDQIRLALRNAQMLENQRDLVDRAEAANRAKSSF 308

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A++SHELRTPLNAILG+S+++ ++    L     +E I  I  +GQHLL+LIN+++DLS
Sbjct: 309 IANVSHELRTPLNAILGYSQILSMDI-KQLKRPDLEESIDQITTAGQHLLDLINDVIDLS 367

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           RIE G+  LS S + L   ++  I   Q  A   +  +       +  V  D   +R+++
Sbjct: 368 RIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNSLVLVCPNDIGLVMIDAPKVRRIL 427

Query: 373 LNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           LNL+SNA KFT  G     V +     +     I+++D G GI   +I  +   F Q   
Sbjct: 428 LNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVRDTGIGIHPDQIEDLFNQFIQADS 487

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +      G+G+GL +++ +    GGQ  + S+   G      +P T+
Sbjct: 488 SSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGSTFRVHVPVTQ 534


>gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1105

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 7/256 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  +    +  +  ++ N  K  FLA +SHELR+PLN ILG+S +++       + 
Sbjct: 708 LTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRSPLNPILGWSSLLKSRKF---DE 764

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T    +  I R+ Q  + LI+E+LD+SRI  G+  L+ + ++L  ++   +  ++L A+
Sbjct: 765 ATTNRALETIERNTQLQIKLIDELLDVSRIIRGKLNLTFATVNLASVIDAALETVRLIAE 824

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQ 401
            K+I+I  ++DP++  V  D   ++QV+ NLLSNAVKFT   G V V++   G  +    
Sbjct: 825 SKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKFTPPNGSVEVSLSSSGELASHSA 884

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI+   +P V   F Q   +      G+GLGL I ++++  HGG     S 
Sbjct: 885 LIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLGLGLAIVRNLVELHGGTVTAASP 944

Query: 462 -LREGVEVIAILPNTR 476
              +G      LP  +
Sbjct: 945 GEGQGAIFTVRLPVMK 960


>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1207

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 8/249 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     K+ F+A +SHELRTPL +I G   +I     G L        I    ++
Sbjct: 710 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLIAGGVAGEL-PPRAAAMIDIALKN 765

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ LIN+ILD+ +IE+G+       + L ++VR+ I   +   Q+ N++I       
Sbjct: 766 SERLVRLINDILDIEKIESGKMVFKMQPVVLDELVRQTIEANRGFGQQYNVQIELTATLP 825

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V+ D   M QVI NL+SNAVKF+  G +V V +G        I++ D+GPGI     
Sbjct: 826 GVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEFR 885

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473
             +   F Q   +    + G GLGL I+++I+  HGGQ    +    G      L    P
Sbjct: 886 DRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERHGGQIGFVTATGVGTTFYVDLAEYRP 945

Query: 474 NTRVLNFIP 482
           NT  +  +P
Sbjct: 946 NTTSMPPLP 954


>gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
 gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
          Length = 1350

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             +     + + ++ AE  N +KS FLA+MSHE+RTPLN I+GF+ ++    +     E  
Sbjct: 949  NKKETEDAIKAKQLAEAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMKTEL----EEIQ 1004

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            ++Y+  I++S   LL +IN+ILD S+IEAG+ EL      +  ++ +   ++   + +K+
Sbjct: 1005 EKYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVFDLIVFESNQKS 1064

Query: 348  IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----Q 401
            +++   +D  +   +W D   ++Q+++NLLSNAVKFT   G + + V   S         
Sbjct: 1065 LQLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNE-GSIKLNVSVLSKTKNNFCTI 1123

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              S+ D G GI E     +  +F Q   +      G GLGL I+  ++A    +  + S 
Sbjct: 1124 RFSVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLALMESRLQLEST 1183

Query: 462  LREGVEVIAIL 472
            + EG      L
Sbjct: 1184 IGEGSNFFFDL 1194


>gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 984

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174
            +  L          LT+   A L++A+ I     ++          A  L      + +
Sbjct: 339 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 398

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233
             Q   +  +  +  A + A   +    I         K L    E  ++L+ E      
Sbjct: 399 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 458

Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           L++E            R  AE+ N AKS FLA+MSHE+RTP+N +LG + ++    + PL
Sbjct: 459 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 518

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K Y   I+RSG++LL ++N++LD S+IEAG  E+ ESA  L  +V +   ++Q R
Sbjct: 519 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 574

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EK++     I+  ++  W  D   + QV+ NL+ NA+KFT  G   ++V++       
Sbjct: 575 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 634

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA+ E  T+  +F Q S   K A  G GLGL I++ I+   GGQ  + S
Sbjct: 635 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 693

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  EG      +P T      P
Sbjct: 694 EEGEGSRFWFTVPLTPCDAVEP 715


>gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 960

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 132/279 (47%), Gaps = 7/279 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +   +    +        I E +  +    +   +AE  N AK  FLA+MSHE+RTP+
Sbjct: 550 RWIEWKSYPAGNLVYAAARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPM 609

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           + I+G  +++             + ++  I  S + L++++N+ILD S++EAG+  +   
Sbjct: 610 SGIMGLMDMLLDG----EATPAQRRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDRE 665

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
           A +   ++ E     +  A++K + +   +D ++ + + +D + + Q++ NL+ NA+KFT
Sbjct: 666 AFAPRTLIEEVCGRFEYMAEQKELRLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFT 725

Query: 384 AIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G V V +   T+ +   +S+ D+G GI + ++  +   F Q   +      G GLGL
Sbjct: 726 QQ-GEVSVRLRADTTDKLLTLSVSDSGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGL 784

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I + ++   GG   + S+L  G      +P        
Sbjct: 785 AICKGLVQALGGDIRVESELGAGSVFTVRIPMEIAPQTT 823


>gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
 gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
          Length = 626

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 13/238 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + +F++++SHELRTPL ++  + E +        + E    ++         ++ +I
Sbjct: 379 DRERRQFVSNVSHELRTPLTSMRSYIEALNDGAW--KDPEVAPSFLKVTQDETDRMIRMI 436

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN----------IEIFQKID 355
           N++L LSR+++G  +L    ++L ++    +    +  ++ N            I +   
Sbjct: 437 NDLLSLSRMDSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYTIKRDFT 496

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NA+K++  GG +   +  T      +SI D G GI   
Sbjct: 497 KRDLWVEIDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNH-VILSITDQGLGIPRK 555

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A   A+ G GLGL I++ ++  H G+  + S   +G      LP
Sbjct: 556 DLGHIFDRFFRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYISLP 613


>gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 602

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTPL+ + G+SE +  +  G    +  KE    IH     +  
Sbjct: 362 RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAG--TPDERKELAQVIHDESLRMGR 419

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW 362
           L+ ++LDL+++EAG   ++   + +  + +         A+E+ I +  ++   +   + 
Sbjct: 420 LVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIE 479

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPT 419
            DE  + QV+ NLL NA + T     V +      +       I ++D G GI   ++P 
Sbjct: 480 GDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPY 539

Query: 420 VLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           V   F +   A    A  G GLGL I ++I+  H G+  ++S L +G      LP  R
Sbjct: 540 VFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYR 597


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 767

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E +++AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   + E  K
Sbjct: 530 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EYI  I  + + LL LIN+ILDLS+IE+G  E  +   +L  +  E  + +Q +    N+
Sbjct: 586 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E+      S   V  D   ++QV +N L+NAVK T   G + +  G        I ++D 
Sbjct: 646 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIEREG-LRIYVEDT 703

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +     V T F +         QG GLGL I+++I+   GG+    SKL  G   
Sbjct: 704 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 759

Query: 469 IAILPNTR 476
            A LP   
Sbjct: 760 WAWLPLRP 767


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 657

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E +++AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   + E  K
Sbjct: 420 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 475

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EYI  I  + + LL LIN+ILDLS+IE+G  E  +   +L  +  E  + +Q +    N+
Sbjct: 476 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 535

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E+      S   V  D   ++QV +N L+NAVK T   G + +  G        I ++D 
Sbjct: 536 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIEREG-LRIYVEDT 593

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +     V T F +         QG GLGL I+++I+   GG+    SKL  G   
Sbjct: 594 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 649

Query: 469 IAILPNTR 476
            A LP   
Sbjct: 650 WAWLPLRP 657


>gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 638

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                ++   +A +   AKS FLA MSHE+RTP+N+ILG   ++    +   +    +E 
Sbjct: 140 KNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED----REK 195

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H SG  LL +IN+ILD SR+EA   +       L + V   + +L+ RA EK++ +
Sbjct: 196 LSVVHDSGAALLGIINDILDFSRLEADGVQFENLPFHLGNTVEGVVSLLRGRASEKDLTL 255

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDN 408
                  L   V  D   +RQV++NL+ NA+KFT  GG + + +  +    G   ++ D 
Sbjct: 256 VLDGPAQLPGWVSGDGARLRQVLINLIGNAIKFTDQGG-IVLRLRRSDDGNGYEFAVIDT 314

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+   +  ++   F Q   +I     G GLGL I + ++   GG+  + S    G   
Sbjct: 315 GIGLDAAQAQSLFQPFHQADASISRRFGGSGLGLAICKKLINAQGGKIGVDSTKGLGSRF 374

Query: 469 IAIL 472
              L
Sbjct: 375 WFRL 378


>gi|301162819|emb|CBW22366.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 639

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE ++    E + RAEE N  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILDLSR+EA +  L+     ++ + R+ +  +++ 
Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
            +E       +       +  D + ++QV++NLL+NA KFT   G + +           
Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI + +   V   F +         QG GLGL I +  +   GG   I   
Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626

Query: 462 LREGVEVIAILPN 474
             +G   +   P 
Sbjct: 627 YEDGARFVVSHPL 639


>gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium]
 gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium]
          Length = 2112

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 21/268 (7%)

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
              + +  +D+ R+ AE    AKS FLA+MSHE+RTP+NAI+GFS++    ++    +   
Sbjct: 1558 ERIEREQADKQRQIAEAATQAKSEFLANMSHEIRTPMNAIVGFSKLALESSL----DRKQ 1613

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             EY+  I  + ++LL L++++LD S+IEAG+  L      L + + E   + +   + +N
Sbjct: 1614 HEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSETLTEVERLFRTEVRRRN 1673

Query: 348  IEIFQKID-------PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            + +  +         P    +  D   ++QV++NL+ NAVKFT  GG + +     +   
Sbjct: 1674 LTLEIEDRTGEHPGFPEDGVLTGDALRIQQVLVNLVGNAVKFTETGG-IVIGAEVIAANH 1732

Query: 401  ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +S+ D G GI + ++  +  SF Q   +      G GLGL I++ ++   GG+ 
Sbjct: 1733 GQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGLGLTISERLVDLMGGEI 1792

Query: 457  LIRSKLREGVEVIAILPNTRVLNFIPED 484
             + S + EG      L     +  IP++
Sbjct: 1793 HVTSTVGEGSCFQFTL-----IATIPDE 1815


>gi|257792718|ref|YP_003183324.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|317489005|ref|ZP_07947532.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325831168|ref|ZP_08164492.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|257476615|gb|ACV56935.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|316911872|gb|EFV33454.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487089|gb|EGC89535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 908

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 172/424 (40%), Gaps = 32/424 (7%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A + T   +     +++ + +       +  +++             +   ++GQ+   L
Sbjct: 305 AAVVTTTFEAVFAIIFACLVVVALLVFGAYRRRL-----------REQNVAMLGQLYEAL 353

Query: 120 CWTL-LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
             ++ + +        +   I   A  +I   + A        A  +   P  VAL  + 
Sbjct: 354 SDSIDMAVNLYSPTDGKVTPIVAKAERIIGYRLDAFLQNE-RLAATIGLSPEGVALFDRI 412

Query: 179 IM----SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                      + S          + +Y    L  +            D+ A+ E+  S+
Sbjct: 413 RKDETKGFEQGEFSFRSKQTGKECWASYSVKRL--TFEDKPQLLVVMRDVTADKEIQLSM 470

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            D     AE  N AKS FL+ MSHE+RTP+N ILG  ++       P + E   E +  I
Sbjct: 471 KD-AMDVAEAANAAKSEFLSRMSHEIRTPMNVILGTLQLARSN---PDDREKVAETLKKI 526

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +  HLL LIN++LD+S+IE G+  L+     L  ++      ++++ +++  E     
Sbjct: 527 GDASDHLLGLINDVLDISKIENGKMTLASEPFRLSAVLSHVASAVRVQCEQRAQEFVVTT 586

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDN 408
            P   +V+  D + ++Q++LNLL+NAVK+T  GG V        G     R    ++ DN
Sbjct: 587 PPCADAVFVGDARRIKQLLLNLLTNAVKYTPCGGCVRFETTVAKGAAMGYRQVKFTVSDN 646

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++E     +   F     +    EQG GLG+PI ++I+    G   + S   +G   
Sbjct: 647 GIGMSEEFKEHIFEPFSMEGRSR---EQGTGLGMPIVKNIVTMMAGDIAVESTKGQGTTF 703

Query: 469 IAIL 472
               
Sbjct: 704 TVTF 707


>gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 768

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 141/312 (45%), Gaps = 10/312 (3%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           ++++SL         +       + +        Q    +L   +E       E  +  E
Sbjct: 246 LMNVSLVNGQEVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTE 305

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKSRF+A+MSHE RTPLN I+GFS+++  +     +    +  +  I RSG+HLL+
Sbjct: 306 IANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDRRITSD---QQSNLNVILRSGEHLLS 362

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           L+NE++ LS+IEAG        ++L  +      +L L+A  K+I+    I P +   V 
Sbjct: 363 LVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIHIAPDVPQYVR 422

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-----HVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            D K +RQ+++NLL NA+KFT  G  V       +    S    +  I+D GPGI    +
Sbjct: 423 TDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQDTGPGIPGHLL 482

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F Q     +    G+GLGL I Q  +    G   I S   +G  V   +     
Sbjct: 483 PQLFEPFAQ-DPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTVSFYIQVESG 541

Query: 478 LNFIPEDNHEST 489
              +     E+T
Sbjct: 542 EPVLEPAISETT 553


>gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 31758]
 gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 930

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 529

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN+I+G ++ +    +          ++  + R+   L+ +IN+ILDL
Sbjct: 148 FLANMSHEIRTPLNSIIGITDTLAETPLDN----QQASFVEILQRANHQLMTIINDILDL 203

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQ 370
           S++EAG  EL     +L  ++ E   +L  RA+EK +++   IDP +   +  D   +RQ
Sbjct: 204 SKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVEEYFVGDADRLRQ 263

Query: 371 VILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V++NLL+N++KFT   G + + V              + D G GI++ +   +   F Q 
Sbjct: 264 VLMNLLNNSLKFTN-NGEISLQVSVNRTVHKGNLLFCVTDTGIGISKQKFKDIFQPFTQA 322

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                    G GLGL I ++I+    G     S+  +G      +
Sbjct: 323 DTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQPGQGTSFFFTI 367


>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1364

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   GG+  + S    G E   ++   +  +  P+   E
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SAPPQAQRE 881


>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1438

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/433 (23%), Positives = 171/433 (39%), Gaps = 30/433 (6%)

Query: 91   KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
             +    +  +G+    R  +    +          L      +   L +     +L  + 
Sbjct: 700  DRFKMGESLVGQAARSRRTIAADGVPGDYISISSGLGPMTPGSLIVLPVVVDDQVLGVIE 759

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYIT 204
            +++ + F   +  FL     +V ++   I++    D  L                     
Sbjct: 760  LASFTAFTPIHRDFLEQLMEMVGVNVNTIVANARTDELLGESQRLTGELQSRSEELQVQQ 819

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
              L +SN ++    A      +++E      ++ R+  EE        +  KS FLA+MS
Sbjct: 820  DELQRSNAELEEKAALLAAQNSDIEAKNLEIEQARQELEERAQQLSLASTYKSEFLANMS 879

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN++L  ++++       L  +   EY G IH +G  LL LIN+ILDLS++EAG
Sbjct: 880  HELRTPLNSLLILAQLLAQNPTRNLTVKQV-EYAGIIHSAGSDLLQLINDILDLSKVEAG 938

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            + +L+    +L  ++       +    +K++       P +   +  D+  +RQV+ NL+
Sbjct: 939  KMDLNPERFTLRQLLDYVEATFRPMTTQKSLTFTISTAPGVPVDLLTDDSRLRQVLRNLI 998

Query: 377  SNAVKFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFG 425
            SNAVKFT   G V + +   +                  +KD G GIAE ++ T+  +F 
Sbjct: 999  SNAVKFTER-GSVELRIEPAADHELPDSVHRGGGVVAFRVKDTGIGIAEQQLETIFGAFQ 1057

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV---LNFIP 482
            Q          G GLGL I++ I    GG    RS    G      LP  R        P
Sbjct: 1058 QADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFTLYLPVARADFQDQAAP 1117

Query: 483  EDNHESTQYKCYA 495
                 +      A
Sbjct: 1118 SPEVSAADSPAAA 1130


>gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 924

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 810

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             ++    I+       D+    E  +      R +AEE +  KS FLA+MSHE+RTPLN
Sbjct: 549 RDYRPEEGIIEMLCINYDITTLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GFS ++        + E  ++YI  +  +   LL LI++ILDL++IEAG +    + 
Sbjct: 608 AIVGFSSLLAET----ESKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGTFNFVYAD 663

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + ++  E I    ++ +  NI++  +       ++ D+    QVI N ++NA+KFT  
Sbjct: 664 LDVNEVCSEIIKSTGMKVKG-NIKLLFEKQIPECHIYTDKNRFMQVITNFINNALKFTHE 722

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + +     S +     ++D G GI   +I +V   F +      +  QG GLGL I 
Sbjct: 723 -GTIALGYEQISSQKIRFYVRDTGVGIPASKINSVFERFVKL----NNFVQGTGLGLSIC 777

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           +SI+    G+  + S    G      LP
Sbjct: 778 KSIITQMEGEIGVDSTEGAGSCFWFTLP 805


>gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
 gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
          Length = 1228

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 5/268 (1%)

Query: 210  SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
            + + +    +++  +  EL   ++   E    A   N AKS FLA MSHE+RTP+NAI+G
Sbjct: 808  ALLGVARDVSQRVAVEKELRRIQTELQEACATANRANEAKSSFLARMSHEIRTPMNAIIG 867

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             + +   +       +        I  S  HLL L+N+ILD+S+IEAG+ ELSE + +L 
Sbjct: 868  MANIARKKLHARSPTDELLNCANQIEVSSHHLLGLLNDILDISKIEAGKIELSEDSFALS 927

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             +V     +++ R  EKNI     ++  + + + AD   +RQV++NLL NA KFT   G 
Sbjct: 928  KLVNSVESIIRPRCMEKNIAFNVAVEGIATAHLKADSLRLRQVLINLLGNAAKFTPELGE 987

Query: 389  VHVTVGWTS--GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +   V         + IS  ++DNG GIAE  + T+   F QGS  I  A  G GLGL I
Sbjct: 988  ILFRVRQEDRRRGERLISFLVQDNGVGIAEETLKTLFEPFEQGSTHIARAYGGTGLGLSI 1047

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++SI+ + GG   + S   +G     +L
Sbjct: 1048 SKSIIKHMGGDIAVTSTPGKGSAFSFLL 1075


>gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 967

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    +    + ++ AE  N AKS FLA+MSHE+RTP+N I+G   +  L++     +
Sbjct: 576 MTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHLARLKS----AD 631

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T  +Y+    +S  HLL ++N++LDLS++EAG+  L+ +  +L       +  L + A 
Sbjct: 632 PTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVEPLLVAAG 691

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           EK +     +   +   V  D   +RQV+ NL+ NA+KFT   GR+ V V   +G     
Sbjct: 692 EKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGK-GRIEVRVALAAGAAEPG 750

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            R    +++D G GI    +  +  SF Q   +  +   G GLGL I++ ++   GG+ +
Sbjct: 751 TRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAHALYGGTGLGLTISKRLVELMGGEII 810

Query: 458 IRSKLREGVEVIAIL 472
             S+  +G      +
Sbjct: 811 AESREGQGSTFSFSI 825


>gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1578

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 144/261 (55%), Gaps = 10/261 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I++ +  +    + ++ A   NL+KS FLA+MSHELRTPLNAILGF++++         +
Sbjct: 1101 ISQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGR---DTSLS 1157

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++E +  I+RSG+HLL LI++ILDLS+IE G+  L  +   L  ++     ML  +A+
Sbjct: 1158 AYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAE 1217

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K I++  + D +L   +  D K +RQ+++NLL+NA+KFT   G V + V  +       
Sbjct: 1218 SKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQ-GTVTLRVNLSKIDQKAV 1276

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G GIA  E+  +   F Q   A K   QG GLGL I+Q ++   GG+  + 
Sbjct: 1277 IVKFIVEDTGVGIAADELDNLFQLFVQAE-AGKKINQGSGLGLAISQKLVQLMGGKIEVN 1335

Query: 460  SKLREGVEVIAILPNTRVLNF 480
            S L +G      +P    L+ 
Sbjct: 1336 SILNQGSIFSFEIPVELSLSS 1356


>gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
           AE E +  KS  ++++SHELRTPL++I GF+E++    +     E+ +E Y+  IH   +
Sbjct: 378 AETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDL----KESRRELYLKTIHDEAK 433

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N+ LDL ++E+G+       + L  +V + +   Q       + I    +    
Sbjct: 434 RLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRHELFIDADTEQDFI 493

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD +GMRQ++ NLLSNA+K++  GG + V++         + ++D+G GI    +P 
Sbjct: 494 -IDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERV-DEEVVMKVRDHGMGIPSASLPH 551

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +   + +    G GLGL I + I   H GQ  + S   EG   I  LP ++
Sbjct: 552 LFGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSK 608


>gi|188582812|ref|YP_001926257.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
 gi|179346310|gb|ACB81722.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
          Length = 1120

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/352 (29%), Positives = 167/352 (47%), Gaps = 15/352 (4%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHVLDISLAGML 193
              +       I   +      ML     +    V+V    +         L  +L  + 
Sbjct: 536 ARVLPARIAAWIGAPLGRYLALMLTLITVIGLIFVIVHAGAAAAHPEHGETLRAALTSLF 595

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDETRKRAEEEN 246
              +     + +    +       Q E        +  IA  +V  +   + ++ AE  N
Sbjct: 596 FILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQAKETAEAAN 655

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           LAKSR++  +SHELRTPLNA+LG+++++E     P   E  +  I  I RS QHL  LI+
Sbjct: 656 LAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRSAQHLSGLID 712

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DE 365
            +LD+SR+EAGR +   + I L D + + + M++L+A+   ++        L +V A DE
Sbjct: 713 GLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLKFRFTRPEILPAVVATDE 772

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K +RQ++LNLLSNA+KFTA  G V + + +  G+    +I+D G GI E ++  +   F 
Sbjct: 773 KRLRQILLNLLSNAIKFTAE-GEVALEMTYR-GQVAVFTIRDTGLGIPEADLGRIFEPFE 830

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +GS+    A  G GLGL IA  +    GG+  + S++ +G      L    V
Sbjct: 831 RGSMPAARAAPGTGLGLTIAGLLAQVMGGEITVESRVGQGTSFRVRLMLASV 882


>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
 gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
          Length = 646

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 13/240 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +     E  + +   I  SG+ LL +IN++
Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETDL----TEEQRLFASTIKTSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEA +  L      L   + E + ++Q+ A++K +E+    D  L      D   
Sbjct: 272 LDYSKIEAEKLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRFVGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLT 422
           +RQ++ NLL NAVKFT   G V V V             +++++D G GI   +I  +  
Sbjct: 332 IRQIMTNLLGNAVKFT-ESGHVLVRVTGVHPDAEGRASVHVTVEDTGIGIPPDKIDHIFG 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNF 480
            F Q         +G GLGL I+Q ++   GG+  + S+  +G        LP   ++  
Sbjct: 391 EFNQVDDERNRKFEGTGLGLAISQKLIRLMGGKIWVDSEPGKGSTFGFSVSLPVAEIVEA 450


>gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 1008

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 138/266 (51%), Gaps = 24/266 (9%)

Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG-------PLNNETYK----- 288
           AE E +  K+ F++++SHELRTPL ++LGF+++I+ +            + +  +     
Sbjct: 510 AEKEVDQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVFPIVVTEDKKVQRAVKQV 569

Query: 289 -EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            + +  I   GQ L +LIN++LD++++EAG+ +     + + D++   I       + K 
Sbjct: 570 GDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDDLIDRAIAATFALFENKG 629

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIK 406
           +E  + I+ +L  +  D   + QV++NLLSN++KFT  G    VT      G    ISI 
Sbjct: 630 LEPIKDIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG---FVTCQAKKIGDKIKISII 686

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+E + P V   F Q    +    +G GLGLPI + I+ +HGG+  + S+L +G 
Sbjct: 687 DTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQIIEHHGGKIWVESELGKGS 746

Query: 467 EVIAILPNTRVLNFIPEDNHESTQYK 492
               ILP        P +  ES+  K
Sbjct: 747 NFSFILPLK------PAEEAESSLKK 766


>gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
 gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 10/254 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +    + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAE--- 377

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              +++  + Y+  +  + + LLNLI++ILD+S+IEAG  EL+ + + L  + RE I   
Sbjct: 378 --ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTC 435

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +  E+ + +          V AD+  + QV+ N ++NA+KFT   G V ++    +  
Sbjct: 436 SHKKHEEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTK-GSVTLSYRLENDT 494

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI   +   +   F +      S  QG GLGL I QS++   GG+  + 
Sbjct: 495 QVRFCVTDTGKGIPAEQQHEIFNRFVKLD----SFSQGAGLGLSICQSLVERMGGEIGVE 550

Query: 460 SKLREGVEVIAILP 473
           S+  EG       P
Sbjct: 551 SREGEGSCFWFTHP 564


>gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 813

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 129/279 (46%), Gaps = 15/279 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +     K   ++     E +    EL           ++A+    AKS FLA+MSHE+RT
Sbjct: 252 LKMARDKLEDRVRQRTVELERANVELTSKSQRLVTAMEKADAATRAKSSFLANMSHEIRT 311

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAILG SE+     +   + +    Y+  +  +G  LL++IN+ILD S+IEA R  L 
Sbjct: 312 PLNAILGMSEL----ALSIPDKDRKDRYLHRVMEAGNSLLSVINDILDFSKIEAARLTLE 367

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                L   +   + +  + A+EK +E+     +    ++  D   +RQ+++NL+ NA+K
Sbjct: 368 NIDFDLRRTIEGTLDLHLIAAEEKGLELRAGVAEDVPPALVGDPSRLRQILINLIGNAIK 427

Query: 382 FTAIGGRVHVTVGWTSGRG---------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           FT  GG V V+V   +               ++ D G GI E +   +  SF Q   +I 
Sbjct: 428 FTETGG-VTVSVRPAAPADDLKPGDPITLVFAVTDTGVGIPEHKQRDIFQSFLQADDSIT 486

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
               G GLGL I Q ++   GG+  + S+   G      
Sbjct: 487 RKYGGTGLGLAICQLLVELMGGELTLESREGMGSTFTFT 525


>gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with
           Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
 gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
          Length = 918

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 27/387 (6%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFLSFFPVVVALST 176
             W +++L      +   +  +    LL   ++++  L  +   + +      +   +++
Sbjct: 410 TGWQVISLYNRKYLSLVVVAAWLPTMLLGLFSIALVVLFIYKFTHLLVKPIIELTHLINS 469

Query: 177 QAIMSMHVLDI-SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-- 233
            +    HV +  S    +      F  +   L  S   + +   + +DL  +L       
Sbjct: 470 FSKTKKHVFNTDSSWYEVLQLQQQFEMLGNALQHSIKSLQASNVKNEDLNKQLSQFNQQL 529

Query: 234 ---------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                       +  K A E N+AKS+FLA+MSHELRTP+N ILG  EV+  +    L+N
Sbjct: 530 ADKVAEQTTELTQAVKLANEANIAKSQFLANMSHELRTPMNGILGMGEVLLRDQ--SLSN 587

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE +    +S ++LL+++N+ILD S+IEA   EL+     +   +     +      
Sbjct: 588 E-QKELLLTQQKSAKNLLDILNDILDFSKIEANAMELNSRPTQVAPFIENIRSLFTPIVS 646

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E       +L   +  DE  + QVI+NLLSNA KFT   G V ++  + +     +
Sbjct: 647 TKEVEFSIIQTTNLPLYISVDELRLNQVIINLLSNAYKFTEQ-GFVRLSFDY-NDNKLQV 704

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D+G GIA+ +   + + F Q  + +     G GLGL I+Q ++    G+  + S+  
Sbjct: 705 SVEDSGIGIAKAQQSLLFSEFTQADVGVARKYGGTGLGLAISQKLIKMMDGEIHLHSEEG 764

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G      +         PE     ++
Sbjct: 765 KGSTFTFSI-------SAPESAEAPSK 784


>gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 709

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/270 (37%), Positives = 152/270 (56%), Gaps = 2/270 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +    EL +A +     ++RAE  N AKS FLA MSHELRTPL
Sbjct: 442 RRLKATINDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEFLAKMSHELRTPL 501

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE+I+ ET G L +  Y EY+ DIH SG+HLLNLIN IL++S+IE+    +++ 
Sbjct: 502 NAILGFSEIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMSKIESEHIAINKK 561

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             +LI I+ E +  +   AQ+KNI I + I P L    ADE+ +++++  + SN++KFT 
Sbjct: 562 NTNLIPIINESLQSIASSAQKKNIMIEKNISPEL-FCNADERIIKKILTPIFSNSIKFTN 620

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG++ V     +     I++ D G GI +  +  V   F Q          G GLGL I
Sbjct: 621 NGGKMIVQTSRVND-SVIITVADTGIGIPKSALKKVGKPFEQLHNQYDQNTGGSGLGLAI 679

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++   HGG+  I S+  EG  +   +P 
Sbjct: 680 SDALTNLHGGKLEILSQEGEGTVIKIGMPK 709


>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 146/269 (54%), Gaps = 16/269 (5%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            ++ +     ++A LE ++    +  ++AE  N AKS+FLA MSHELRTPLNAILGF+++
Sbjct: 499 EVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILGFTQI 558

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +   +     ++  +E +  I RSG+HLL+LIN++L++S+IEAG+  L+E+   L  ++ 
Sbjct: 559 LTRNS---SLSQEDQENLDIISRSGEHLLSLINDVLEMSKIEAGKPTLNETYFDLYRLIY 615

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               M  L+A +K I +  +    +   V+ DE  ++Q+++NL+ NA+KFT + G V + 
Sbjct: 616 SIQEMFALKAADKGINLITEFGVEVNKYVFGDEGKLKQILINLIGNAIKFTVV-GHVAIR 674

Query: 393 VG--------WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           V           +     I   ++D G GIA  +   +  +F Q S   +   QG GLGL
Sbjct: 675 VSCPPNYAPLAVTNGKVLIELEVEDTGAGIALEDQELIFEAFLQ-SKGGRQFMQGTGLGL 733

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I++      GG   ++S L EG      
Sbjct: 734 AISRQFARLMGGDITVKSILGEGTTFTCR 762


>gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
 gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
          Length = 1104

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 5/271 (1%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             K  +  L    E+      L +      +T +   E +  K  F++++SHELRTP+ +I
Sbjct: 831  RKIAIATLLDITERKQSEETLRIYSEKLSKTNEELRELDKMKDEFISNLSHELRTPITSI 890

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
             GFSE+I  E +G L NE  KE +  I +S   L  LI  +L +++++  + +     + 
Sbjct: 891  KGFSELIYNEKLGTL-NEKQKEGMDSIVKSCDRLRWLIESLLYVNKLQTEKIQYKFEPVD 949

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            +  ++   +  L L+ +EK I I + +D +L  V  D+  +RQV+++L+ NA KFT+ GG
Sbjct: 950  VETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNGDKDYLRQVLVHLMDNARKFTSSGG 1009

Query: 388  RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            ++ +     +        +I +KDNG GI +  IP +   F Q   ++    +G GLG+ 
Sbjct: 1010 KIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPDIFKLFYQIDGSMTRKYEGTGLGMY 1069

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   I+  H G   + S+   G +V   LP 
Sbjct: 1070 LCNKIIETHNGYIWVDSEENAGTDVHVKLPA 1100


>gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
 gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
          Length = 780

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 6/302 (1%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++    +     D SL  +L T  +             V  L      +   A+L     
Sbjct: 411 MAGWRAVQGRKRDGSLFPVLVTLSATLI----DGQPMVVAALKDMTVIEQQKADLRALAD 466

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E  K A+  N AK+RFLA++SHELRTPLNAI+GFSE++  +T   ++ E  +EY  D
Sbjct: 467 EVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYAAD 526

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + ++G HLL LI+++LDL+RIEA R EL         +  + + ML    ++K IE+   
Sbjct: 527 VAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELEVA 586

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPG 411
           + P L  V AD + ++Q++ NLL NA KFT  GGRV VTVG           +++D G G
Sbjct: 587 VAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGGRVTVTVGLDRAVPGQVRFTVEDTGCG 646

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +   ++P +   F Q     +++  G+GLGL I++ ++   GG   I S+L     V   
Sbjct: 647 VPADKLPLLGQPFVQVGDKRRASAPGLGLGLAISRGLVERMGGMLRIESELGRWTRVSFG 706

Query: 472 LP 473
           LP
Sbjct: 707 LP 708


>gi|110596751|ref|ZP_01385041.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341438|gb|EAT59898.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 672

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 14/254 (5%)

Query: 228 LEVAKSLSDET----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            E  + +  E+    R  AE  N AKS FLA+MSHE+RTPL+A++G +E++    +    
Sbjct: 260 KEQIQRILIESLKKSRVEAEIANRAKSEFLANMSHEIRTPLHAVVGMTELLLDTPL---- 315

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N T + Y   I  S + L  LIN+ILD ++IE+G+ +  +S  +L  +  E   +L   A
Sbjct: 316 NSTQRHYTDTIQASTKQLHQLINDILDFTKIESGQLDKVKSPFNLRALFTELSSILTGNA 375

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++  +++   I  S++  +      ++Q ++NL+ NA+KFT  GG + V V   S     
Sbjct: 376 EKAGLQLSFIIPESVAGDLIGYPIYLKQALINLIQNAIKFTYKGG-IVVQVATESETPGE 434

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               IS+KD G GI + +   V   F Q   +      G GLGL I+  ++   GG+  +
Sbjct: 435 ITLRISVKDTGIGIPDEKKELVFQRFTQLDSSATRKAGGAGLGLAISTQLVEFMGGKLNL 494

Query: 459 RSKLREGVEVIAIL 472
            S+  EG E   ++
Sbjct: 495 NSRKNEGSEFWFVI 508


>gi|315180554|gb|ADT87468.1| sensor histidine kinase [Vibrio furnissii NCTC 11218]
          Length = 796

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 9/258 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++   
Sbjct: 311 QDEIRYLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS 370

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            + P      ++ +  ++ SG+H++ L+NEILD S+IE G  EL  S+  L  I+     
Sbjct: 371 DLKP----RQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTS 426

Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +      EK ++             ++D+  +RQ++ NLL+NAVKFT   G V V +   
Sbjct: 427 VYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYR-GLVEVILEEE 485

Query: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +   Q    I ++D G GI +     +   F Q   +      G GLGL I + I     
Sbjct: 486 TVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMR 545

Query: 454 GQFLIRSKLREGVEVIAI 471
           G   + S++  G      
Sbjct: 546 GSVNVVSEVGIGTSFTIR 563


>gi|322418244|ref|YP_004197467.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124631|gb|ADW12191.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 732

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 16/322 (4%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS------CQAEKD 222
            V+  L+T + +      +     L+  +S    ++  L  +   + +       Q    
Sbjct: 129 LVLHVLATNSRIRGMFAGVMQGSHLSVEVSTLNALSGILINTAYAVENSELYDMLQEHMQ 188

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L  +++   +  +    +AE    AKS FLA+MSHE+RTP+N ++G + ++    +   
Sbjct: 189 NLELKVQQRTTELEHALVQAEAATAAKSVFLANMSHEIRTPMNGVIGLARLLMETPL--- 245

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++    Y+  +    + LL +INEILD+S++EAG   L +    L   +   +    LR
Sbjct: 246 -DKVQSNYLESLSDCAESLLTIINEILDISKVEAGMITLEKIVFDLRRFLDRSLQPFMLR 304

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397
            QEK +++  +  P L  +   D   + QV+ NL+ NA+KFT   G + V+         
Sbjct: 305 GQEKGVQVLLEASPDLPQLLVGDPVRIGQVLGNLIGNALKFTQR-GTITVSCRLIEMKEG 363

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                +++ D G GIA   +  +   F Q   +      G GLGL I++S++   GG   
Sbjct: 364 DVLLRLAVADTGIGIAPQALDVIFEKFSQADSSTTRLYGGTGLGLSISRSLVELMGGALG 423

Query: 458 IRSKLREGVEVIAILPNTRVLN 479
           + S+L EG      L     L 
Sbjct: 424 VESRLGEGSVFSFTLQARLPLP 445


>gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 479

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE NL K R  F+A++SHE+RTPL+ + G+SE +        + E   E    I+ 
Sbjct: 234 RDVTEEVNLEKMRRDFVANVSHEIRTPLSMMQGYSEALLDGM--ASSPEESAELAQVIYD 291

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+ ++LDL+R+EAG  ++    I   ++        Q+RA++  +E+  +++ 
Sbjct: 292 ESLRMGRLVRDLLDLARMEAGHTDMVMRKIDFRELAERVDRKFQVRAKDNGVELVLELED 351

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIA 413
               + ADE  + QV+ NLL NA + T  GG+V V     +G      ++++ D G GI 
Sbjct: 352 GELQLQADEDRLEQVLTNLLDNAFRHTPEGGKVTVKAHMETGEMGKQLHVAVSDTGVGIP 411

Query: 414 EGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +   F +   A    E  G GLGL I ++I+A H G     S++ +G     +L
Sbjct: 412 SEDLRYIFDRFYKADKARVRGENGGTGLGLSIVKNIIAAHHGSIWADSEIGKGTVFHFLL 471

Query: 473 PNT 475
           P  
Sbjct: 472 PVE 474


>gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1031

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 11/260 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D + E E         +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS ++      
Sbjct: 638 RVDDVTEREEMIKELQIAKMHAEQSDKLKSAFLANMSHEIRTPLNAIVGFSGLMM----- 692

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             ++E  ++Y+  I+ + + LL LI++ILDLS++EAG  EL      L D        ++
Sbjct: 693 YASDEEKEDYMQIINNNNEMLLKLISDILDLSKLEAGSVELKYEEFDLTDYFNSMFASMK 752

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            RA    I+I          V  D   + Q+I N ++NA+K+T   G + +   +     
Sbjct: 753 QRATNPKIQIVAVNPYQHCLVTLDRNRVAQIITNYVTNAIKYTTE-GTIEMGYEYREEG- 810

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y  +KD+G GI + +   V   F +         QG GLGL I ++I    GG     S
Sbjct: 811 IYFYVKDSGIGIPDEKKNKVFHRFEKLDE----FAQGTGLGLSICKAIAEAMGGNVGFES 866

Query: 461 KLREGVEVIAILPNTRVLNF 480
           +  +G    A+LP    +  
Sbjct: 867 EYGKGSLFWALLPCEVEIPS 886


>gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988]
 gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S]
 gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161]
 gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
 gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
          Length = 596

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +       
Sbjct: 457 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
           R    I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 577 SVESELGKGSDFIITLPLYK 596


>gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 997

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 9/280 (3%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+++I S   +    +       +     ++ AE  +  KS FLA+MSHELRTPLN I G
Sbjct: 581 SDIRITSLFMDAVWRMVARRRDAAALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQG 640

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            ++++   ++ P      +EY+     S + L  L+ +ILDLSR+E+G+  L      L 
Sbjct: 641 MTQLLAATSLTP----EQREYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLA 696

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG- 387
           D++            E  I+   ++ P +  + + DE  +RQ++ NL+ NAVKFT  GG 
Sbjct: 697 DLLSAVAAAFMPACLEAGIDWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFTKTGGV 756

Query: 388 RVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           R+ V  G          + ++ D G GI   E+  +  +F Q   +     QG GLGL I
Sbjct: 757 RLEVWAGPVDASGCGSLFFAVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAI 816

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            + ++    G   + S++  G   +  LP  R      ++
Sbjct: 817 VRRLLDLMQGTISVESEVGRGTRCVCALPLIRPQPQHQKE 856


>gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
 gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
          Length = 687

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 16/269 (5%)

Query: 230 VAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                + E +K AE   E + AK+RFL +MSH++RTP+NAI+GFS+++        N E 
Sbjct: 288 RENQYAVELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL---DNEEK 344

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +EY+G I  SG  L+ +I+++L+++RIE+    L   A +L ++      +L+   Q K
Sbjct: 345 VREYLGKIKSSGNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMK 404

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYI 403
            I      +      + D+  ++++ LN++SNA+K+T  G  +HVT+  T     + +Y+
Sbjct: 405 GIHCSIDANVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYV 464

Query: 404 SI-KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + +D G G+A   +P +   F +   A ++   G GLGL I +S +    G+  + S+ 
Sbjct: 465 FVCEDTGIGMAPEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEP 524

Query: 463 REGVEVIAILPNTRVLN------FIPEDN 485
            +G +    +P             +PE  
Sbjct: 525 GKGTKFTVEVPLELASEEDVCKKELPEQT 553


>gi|153811915|ref|ZP_01964583.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
 gi|149832049|gb|EDM87134.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
          Length = 865

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K  +  +    EK   I     ++    E    AE  N AK+ FL++MSH++RTP+N
Sbjct: 317 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYWSAENANRAKTEFLSNMSHDIRTPMN 372

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +         + +   E +  I +S +HLL LINE+LD++RIE+G+  L++  
Sbjct: 373 AIVGLTAIAGANI---ESQDRVIECLSKITKSSRHLLGLINEVLDMARIESGKMTLAQED 429

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
            +L D+V   I + +    E       +I+      V  D   ++QV +NL+SNA+K+T 
Sbjct: 430 FNLPDLVDNLITLTKPVLDEHKHNFDVRINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTL 489

Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            GG +  ++               +I+DNG G++      +   F +      +  QG G
Sbjct: 490 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTKVQGTG 549

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LG+ I+++I+    G   + S L +G ++   +
Sbjct: 550 LGMAISRNIVNLMNGNIKVDSTLHKGTKITVTI 582


>gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 576

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 LIDGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569


>gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1336

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 10/268 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E           ++ AE  + AKS FLA+MSHE+RTP+NAI+G + +  + ++   
Sbjct: 678 HDVTERRHLTRQLQRAKEEAEAASRAKSDFLANMSHEIRTPMNAIIGMTNLTLMTSLTR- 736

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E++G +  + + L+ L+ +ILDLS+IEA +  L      L D++   +  L +R
Sbjct: 737 ---EQTEFLGTVKSAAESLMQLLGDILDLSKIEARQLALENVEFDLADLLEATLRDLAVR 793

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A  K +E+  ++ P     +  D   +RQ+++NL+ NA+KFT   G+V V     +    
Sbjct: 794 AHGKGLELIGRMAPGAPGRLRGDPLRLRQILVNLVGNAIKFT-DHGQVLVEARLEAMADN 852

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S+ D G GI    I  V   F Q   +      G GLG  I++ +    GG+  
Sbjct: 853 KLEMRFSVVDTGVGIEPENIGRVFDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIW 912

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDN 485
           + S    G      +         PE +
Sbjct: 913 VESTPGRGSAFHFTIAAGHSSQDQPEPS 940


>gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 664

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/272 (32%), Positives = 146/272 (53%), Gaps = 14/272 (5%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPL 264
            +++++  + +   ++L  + +   +  DE R     AE  NLAKSRFL+SMSHE+RTP+
Sbjct: 240 HRAHLET-TVRERTEELEHKNDSLNTALDELRNATLVAERANLAKSRFLSSMSHEIRTPM 298

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA+LG +E++    + P        Y+  I  +G+ LL ++++I+DLSRIE G   L E+
Sbjct: 299 NAVLGMAEILGETELTP----DQTRYVQIIRAAGESLLAILSDIIDLSRIETGSLRLDET 354

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             +L + V +   +++ RA +K++E+   + P +   +  D K + QV+++LL NAVKFT
Sbjct: 355 RFTLSETVDKAFAIIEPRAGQKSLELVCTLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFT 414

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             GG V ++V    GR        S+ D GPGI    +  +  SF Q + +      G G
Sbjct: 415 -EGGTVRLSVSRAPGRDGGVAVQFSVSDTGPGIPADRLGAIFDSFTQANNSTTREHGGAG 473

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           LGL I++ I+   GG+    S +  G      
Sbjct: 474 LGLTISKRIVHMMGGRIWAESSVGLGSTFHFT 505


>gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1331

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  ++V ++  G       L E        L I     +L  + +
Sbjct: 600  RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 659

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208
            ++++ F      FL      + ++   I++    D  LA    +     +    +     
Sbjct: 660  ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 719

Query: 209  KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
            +        + +   L A+    E      ++ R+  E         +  KS FLA+MSH
Sbjct: 720  ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 780  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   ++L  ++       +    +K +E      P   + +  D+  +RQV+ NLLS
Sbjct: 839  MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 898

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V + V                      +KD G GI E  + ++  +F Q
Sbjct: 899  NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 957

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG   + S    G      LP  R
Sbjct: 958  ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1007


>gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
 gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
          Length = 631

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 176/480 (36%), Gaps = 58/480 (12%)

Query: 46  FRVSPILPLFVLLVANIG--TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
               P+     L+V   G   W     I   W L           L     +   +    
Sbjct: 142 LSHLPVAIACALIVCLAGKAPWSLYPEIAGTWFLSDSFGILIFAPLIIATQHGYREFIHH 201

Query: 104 YV--WRIWLLVGQIAIG------------------LCWTLLTLVEPGTWTPEYLTIYKSA 143
               W   + +  + +G                  L WT     E G      + +   A
Sbjct: 202 LKKYWLAAISIATLTLGISHLVINGYHGEYLLAPLLVWTTFQFKEVGATLLMVMIVLMVA 261

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-GMLATALSFFTY 202
              +           L  ++ LS F +        ++   + +   A   L         
Sbjct: 262 ISTVQ-GYGTFVGESLRNSLLLSQFFIACIGLMTLMLIAVLNEKKQAKADLKAMNQTLAS 320

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVA---KSLSDETRKRAEEENLAKSRFLASMSHE 259
               L +   +      ++++L+ +   A   +    + ++ AE     KS FLA+MSHE
Sbjct: 321 QNQRLEELATQKELAHQQRENLLVKYNQALKRQLNLIQAKQAAEMAAQEKSEFLANMSHE 380

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN ++G ++++    +     +   E +  I  SG+ LLN+IN+ILD  RIE+G  
Sbjct: 381 IRTPLNGVIGVAQLLLTMDL----KDDQAELVAIIEDSGKTLLNIINDILDFLRIESGSL 436

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
            L     S  ++++    +L+++A +K+I++   +  S+ ++   D+  +RQ++ NLL N
Sbjct: 437 RLEARCFSFQELLKSVFTLLKVQADQKDIDLQYCVADSIPNILMGDDLRLRQILFNLLGN 496

Query: 379 AVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           A+KFTA G    V    T               I D G GI   ++  +   F Q   +I
Sbjct: 497 ALKFTATGSVQLVITSHTVPSLSDPPTEELSFQILDTGIGIQVAQLNQLFQPFIQADASI 556

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-------------KLRE------GVEVIAIL 472
                G GLGL IA+ ++   GG+  + S                E      G       
Sbjct: 557 SRRYGGSGLGLAIAKRLVNLMGGKIWVESNGELAGDPPPDWFTPGELDPQSYGASFYFTF 616


>gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913]
 gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 940

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDD---LIAELEVAKSLSDETRKRAEEENLAKSRF 252
                  +   +  + + +   + EK     L  ++E          +   E N  KS+F
Sbjct: 422 LTFLLVIVAILILITVIAVYKRRTEKQAKLKLSEQVEQRTKELQSVAQELREANEVKSQF 481

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA++SHE+RTPL AIL  ++       G    E  ++ +  I R  +HL +LIN++LDLS
Sbjct: 482 LANISHEIRTPLTAILAQTD---DLISGQYKAEQLQDELRVIQRQSEHLRSLINDVLDLS 538

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQV 371
           +IEA R EL+ S   ++ ++ +   M   + + K + +  +           D   ++Q+
Sbjct: 539 KIEANRLELNISCFDMVRLINDVHAMFSPQTKAKGLSLILESQLGDTYFTRLDLTRVKQI 598

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL +NA+KFT   G V + V  T  +G    I+D G G++  ++  +   F Q   +I
Sbjct: 599 LINLCANAIKFTHK-GHVTIAVSKT-DQGLLFCIQDTGIGMSSSQLKLIFECFSQADNSI 656

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
                G GLGL ++Q + A  GG   ++S+ ++G E    LP  +V   +  D+ ++
Sbjct: 657 SRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSEFSFYLPCIQVEEQVCHDDMQA 713


>gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
          Length = 960

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 137/292 (46%), Gaps = 13/292 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                + F  +V  +      D   AE    + L  +    A+  N AKS FL+ MSH++
Sbjct: 402 IIYVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKAANQAKSDFLSRMSHDI 461

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G S +     +   +  + ++    I  S ++LL+LIN+ILD+S+IE G+ E
Sbjct: 462 RTPMNAIVGMSTI---GQLKLDDRRSVQDCFCKIDASSRYLLSLINDILDMSKIETGKME 518

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379
           L+       +++ E   ++  +A+E+ IE        L   +  D   ++Q+++NLLSNA
Sbjct: 519 LAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGDPLRLKQILMNLLSNA 578

Query: 380 VKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT  GGR+ + +               +KD G G++      +   F Q +       
Sbjct: 579 LKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRLFMPFEQEAPETARNN 638

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            G GLGL I  +++   GG   + S+  +G      LP       + ED+ E
Sbjct: 639 IGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPFK-----LAEDDQE 685


>gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 468

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 4/254 (1%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
               +A++ +      A+E +  K  FLA++SHELRTPL+ I G+SE +          E
Sbjct: 219 EIGRLAQAFNQMADAIAKE-DERKREFLANVSHELRTPLSYIKGYSEALLSGL--ARTKE 275

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + ++  IHR  + +  L+ ++LDL+++E     L  + ++   ++ + + M +    +
Sbjct: 276 EEQSHLRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIEDVMDMYRPIITQ 335

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K + +   +D  L  V  D   + QV+ NLL NA+++T  GG V V +   S     + I
Sbjct: 336 KRLTLTCDLDYELI-VDGDADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRFSDTEGELVI 394

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI + ++P +   F +   A    E G GLGL I + I+A HGG     S L +G
Sbjct: 395 RDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHGGAIQFDSDLGQG 454

Query: 466 VEVIAILPNTRVLN 479
             V   LP  +   
Sbjct: 455 TTVSVRLPLVQEEE 468


>gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 790

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 6/290 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +  V+++S           LE   +   +     +E +  K+ F +++SHELRTPLN IL
Sbjct: 488 RMAVQVVSRDISDRKRAEILEKHMAQKQQLIHEMQECDRLKTEFFSNISHELRTPLNVIL 547

Query: 269 GFSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           G  +++     +           +++G + ++   LL L+N ++D+++I++G  E+    
Sbjct: 548 GSLQLMNLYTNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNNLIDMTKIDSGFCEMQLQN 607

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +++ IV E  + +    + + I +    +     +  D   + ++ILNLLSN+VKFT  
Sbjct: 608 HNIVSIVEEITLSVAAFIENRQITLLFDTEVEERMIACDPDKIERIILNLLSNSVKFTNY 667

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG++ V +    G    ISIKD G GI   ++  +   F Q    +    +G G+GL +A
Sbjct: 668 GGQITVYIEEIEGN-VVISIKDTGIGIETEKLDMIFQRFRQADDLLTRRNEGSGIGLSLA 726

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE-STQYKCY 494
           +S++   GG   + S+   G E     P  RV+  +  +  E + + K Y
Sbjct: 727 KSLIELQGGTISVTSEYGRGSEFTVTFPI-RVVETMKGEVQEINNKQKSY 775


>gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 421

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K+ F++ +SHELRTPL AI G  E++    +     E  ++ +     + + LL 
Sbjct: 192 EVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREA-EQMLKIAVSNSERLLR 250

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362
           L+N IL+L  +++G+  L+     +  +V++ +  +Q  AQ+K +EI     D   S + 
Sbjct: 251 LVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDVHNSKIL 310

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ + QV+ NLLSN+VKF+  G +V +       +   I++KD G GI   ++ T+  
Sbjct: 311 ADEETIIQVLTNLLSNSVKFSHAGTKVEIYTKM-GDKEIIIAVKDYGKGIPADKLKTIFE 369

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q  ++      G GLGL I ++I+  H G+  I S L  G      LP
Sbjct: 370 RFEQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420


>gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 517

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 122/255 (47%), Gaps = 8/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  +   +      R  AE  N  KS FLA+ SHE+RTPLN ILG +E      +     
Sbjct: 111 ITAIRANEQRLRLARSEAEAANKTKSAFLANTSHEIRTPLNGILGLTE----HVLKLDLP 166

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  IH +G  LL L+N+ILDLS+IEAG +EL+    +L + V +   +    A+
Sbjct: 167 TEARQHLNTIHDAGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWSGPAK 226

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--G 400
           +K + +   I P +   V AD   + Q + NL+SNA+KFT  G   + V           
Sbjct: 227 QKGLSLDVVIGPGVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKAGQSV 286

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D GPGI++     +   F Q   +      G GLGL I Q +M   GG   + S
Sbjct: 287 VTVAVSDTGPGISDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSVDLES 346

Query: 461 KLREGVEVIAILPNT 475
           K+  G      LP  
Sbjct: 347 KVGVGTTFRVRLPVK 361


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 166/386 (43%), Gaps = 33/386 (8%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFM---------LPYAVFLSFFPVVVALSTQAIM 180
           G  TP  L +       +AL++  +  F          L  A       V  AL    + 
Sbjct: 311 GQATPAELVMMPIVLNGVALAVVEMGWFRAVAPHEVDFLVRAGEQLAQAVRGALDRSRLE 370

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---- 236
           S+       A  L             L + +  +   Q       AELE + +  +    
Sbjct: 371 SLLDETQRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELEHSNAQLEAQTE 430

Query: 237 ----------------ETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                           E + R   + +  KS FLA+MSHELRTPLN+ L  ++++     
Sbjct: 431 QLQYQKQRLLTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQ 490

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L  E  + Y   IH +G  LLNLIN+ILDL++IEAG+  +    +++  +V   +  L
Sbjct: 491 QNLTAEQVR-YAQTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVAKVVAGVMEPL 549

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           + +AQ+K ++    ++P + + + +D + + Q++ NLLSNA+KFTA  G V + V     
Sbjct: 550 RAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTAR-GEVTMRVFAGDN 608

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GIA      +  +F Q   +      G GLGL I++ +    GG   +
Sbjct: 609 DTLCFAVRDTGIGIAPDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAV 668

Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484
           +S   EG      LP T  L   P +
Sbjct: 669 QSAPGEGSVFTLTLPVTAPLVGDPGE 694


>gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 697

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++ +    + R  AE  N ++  FLA+MSHE+RTP+ AILG ++++      P N 
Sbjct: 303 ITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN- 361

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I R+G  LL +IN+ILDLS+I+AG+ E+++  +    IV E   ++ +RA 
Sbjct: 362 ---LQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAA 418

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QY 402
           EK + +  + D  + +V   D   +RQ+++NL+ NA+KFT   G V +TV +        
Sbjct: 419 EKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDE-GVVRLTVRFDEANSCLQ 477

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI   EI  +   F Q       +  G GLGL I   +     GQ  + S+ 
Sbjct: 478 FHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQY 537

Query: 463 REGVEVIAI 471
             G      
Sbjct: 538 GVGSRFTLS 546


>gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 250

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           +AKS+F+A+MSHELRTPLNAILG+SE+++ +       +   + +  IH +G+HLL LIN
Sbjct: 1   MAKSQFIANMSHELRTPLNAILGYSEILQEDAQEIGEADFVTDLVK-IHSAGKHLLGLIN 59

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++LDLS+IEAG+ E+      L  +++E I  +Q    +++  +  +   +L  + AD+ 
Sbjct: 60  DVLDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEADQT 119

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------SGRGQYISIKDNGPGIAEGEI 417
            +RQ +LNLLSNA KFT   G +   V                    + D G G+ + + 
Sbjct: 120 KIRQSLLNLLSNAAKFTN-NGIITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQK 178

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q   +      G GLGL I +  +   GG   + S    G      LP 
Sbjct: 179 NKIFHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLPL 235


>gi|104782644|ref|YP_609142.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111631|emb|CAK16352.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 642

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 127/270 (47%), Gaps = 11/270 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      I +  +  D    E + A     + R+ AE+ N AKS FLA MSHELRTP+N 
Sbjct: 222 LGHLARHINNLASALDQAAHEQQQAMGQLIQAREEAEQANRAKSDFLAMMSHELRTPMNG 281

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  +++E   +         EY      S  HLL +IN+ILD SRIE    EL     
Sbjct: 282 VLGMLQLLETTQLTS----EQTEYTAVASESTGHLLKVINDILDFSRIERTTLELEHIDF 337

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +L +++   +   Q  AQ++ +++  ++        V  D   +RQ++LNL+ NA+KFT 
Sbjct: 338 NLGELISSSVQSFQHTAQQRGLDLHLQLPAGIDHLQVVGDPTRIRQILLNLVGNALKFTE 397

Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V V   W     Q +    +++D G GI    +  +  +F Q   +I     G GL
Sbjct: 398 R-GEVAVEARWQVLDRQLLWFTCTVRDTGIGIDSNRLEMMFVAFQQADSSISRRYGGTGL 456

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GL IA+++    GGQ    S+   G     
Sbjct: 457 GLSIARTLAERMGGQLRGESREGLGSTFTL 486


>gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 633

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 23/353 (6%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG-- 191
                    A    +  ++ L    L   +      +  A+   A+    +     A   
Sbjct: 147 LARDLALTGALFFGSAGLAILLANGLARRMARPMERLSEAMHETAVGGRFMPVEQAADDD 206

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +  + +  F ++   L  ++  +    AE                + R  A   N+ KS 
Sbjct: 207 VFQSLIDSFNHLVARLRSNDQDLRGAMAE--------------LVKARDDANTANVLKSH 252

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN +L  +EV++++ + P      +E +  I  SG  LL ++N++LDL
Sbjct: 253 FLANMSHEIRTPLNGVLAMAEVMDMDDLKP----AQRERLAVIRESGGLLLAVLNDVLDL 308

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQ 370
           S+IEAGR E+ +    +  + +        +A+EK +     + P    +W  D   +RQ
Sbjct: 309 SKIEAGRLEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGDVDRLRQ 368

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NL+SNA+KFT  G           G G  I + D G GIA   +P +   F Q   +
Sbjct: 369 ILGNLISNALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGIAPEILPRLFDKFVQADSS 428

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFI 481
                 G GLGL I + + A  GG   ++S+   G     +  LP    L  +
Sbjct: 429 TTRRFGGSGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPREETLTEV 481


>gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 604

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        + E    +I       + ++
Sbjct: 371 EKIDRDRREFVANVSHELRTPLTTMRSYLEALADGAW--RDEEIAPRFIEVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y+L ++ +  I    + I   +L  +++N+   +        V+
Sbjct: 429 RLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELT-KKENVSFVRDFPDEKIIVY 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV  N++SNA+K++  GG +   V    G    +S+KD G GI + ++  +  
Sbjct: 488 MDEDKITQVFDNIISNALKYSPQGGTITFRVK-KKGDYIEVSVKDEGVGIPKSDLSKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL IA+ ++  HGG+    S+ R+G  +   LP  +
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLPIEQ 600


>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 686

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/264 (35%), Positives = 139/264 (52%), Gaps = 12/264 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A    DE + RAE  N+AKSRFLA++SHELRTPLN ILG ++++    +    N   + 
Sbjct: 159 EAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPL----NPEQRT 214

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+     SG+ LL L++ ILD SRIEAGR +L+     +  +V   + +L  RAQ+K +E
Sbjct: 215 YVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLE 274

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
           I   I   L+++   D   +RQ+++NL  NA+KFT  GG V V++       +    ++I
Sbjct: 275 IALDIADDLTALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARAGEGQREGFVLTI 333

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D GPGI E  IP +   F QG  +     +G GLGL I + ++    G    RS +  G
Sbjct: 334 EDTGPGIPEERIPILFEEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRG 391

Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489
                +LP        P    + T
Sbjct: 392 SIFRVVLPL-PAAEGAPVPVPQPT 414


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 145/385 (37%), Gaps = 11/385 (2%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
             +  +        L      T           A       ++AL++             
Sbjct: 194 FTLTYLLEADGSAHLADATGLTGGHPAAPQTLPADGSGVWPVTALTHGESMLVPLDDAPF 253

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAE 227
             +            L + L     +   F        ++S         E     L A 
Sbjct: 254 AELPAGDWPRSPSQALVLPLLQQGGSPYGFLVAGLNR-YRSLDDAYRGFVELVAGHLAAG 312

Query: 228 LEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           +  A+S   + R+  E  E + AK+ F +++SHE RTPL  I+G  E +  +  G   + 
Sbjct: 313 IASARSYEAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRTQLAGA--DA 370

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E +  +HR+G  L  L+N +LD SRIEAGR +       L  +  +   + +    +
Sbjct: 371 HIREELDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDK 430

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +       P    V+ D     +VILNLLSNA+KFT   G + VTV         +++
Sbjct: 431 AGLGFHIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFD-GSIRVTVHA-EDTHAVVTV 488

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+   E+P +   F +   A   + +G G+GL + + ++  HGG     S    G
Sbjct: 489 ADTGIGVPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGG 548

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQ 490
                 LP       +P D    ++
Sbjct: 549 TRFTVRLPFGSA--HLPADALAPSE 571


>gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1381

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L +    + S Q E  +    L  A+ + +E  K  E  +  KS FLA+MSHE
Sbjct: 631 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 690

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S++      G L      E    I+ SG  LL+LINEILDLS++EAG+ 
Sbjct: 691 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 749

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           +L    + L  + ++ + + Q  A +K ++      P+L   +  D + ++Q++ NLL+N
Sbjct: 750 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 809

Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           A KFT   G V +            +          S+KD+G GI + +   +  +F Q 
Sbjct: 810 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 868

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +      G GLGL I++ +    GG+  ++S+  +G     I P  
Sbjct: 869 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 916


>gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
 gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
          Length = 1331

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  ++V ++  G       L E        L I     +L  + +
Sbjct: 600  RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 659

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208
            ++++ F      FL      + ++   I++    D  LA    +     +    +     
Sbjct: 660  ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 719

Query: 209  KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
            +        + +   L A+    E      ++ R+  E         +  KS FLA+MSH
Sbjct: 720  ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 780  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   ++L  ++       +    +K +E      P   + +  D+  +RQV+ NLLS
Sbjct: 839  MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 898

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V + V                      +KD G GI E  + ++  +F Q
Sbjct: 899  NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 957

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG   + S    G      LP  R
Sbjct: 958  ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1007


>gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 383

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 78  AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 137

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 138 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 196

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     M Q  A EK +     I     ++ + D + + 
Sbjct: 197 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 256

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 257 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 315

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                  G GLGL I++ + A  GG   + S   +G     +LP + V     E  +ES 
Sbjct: 316 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 375


>gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
 gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
          Length = 436

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 10/304 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA---EKDDLIAELEVA 231
           +         +      +L  A+     +   L KS +K +   A   E D      E  
Sbjct: 132 AGNLWQFGAQIFPIFLVVLILAIGVSLVVAKLLAKSLIKPIELMAQHLEDDKATETYEEI 191

Query: 232 KSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +   D+     K  ++ +  +  F A++SHEL+TPL +I G++E+IE       +    +
Sbjct: 192 QPFMDKIHNQHKALKKSSKMRQEFTANVSHELKTPLASISGYAELIETGMAKEGD---IQ 248

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            +  +IH+S   LL+LIN+I++LS+++   ++LS + +SL + V  C+ MLQ+ A++ NI
Sbjct: 249 HFASEIHKSANRLLSLINDIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNI 308

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   I      + A+++ +++VI NL  NA+++    G V  +V +       + +KD+
Sbjct: 309 TIATDIIEKDCIIKANQEMIQEVIYNLCDNAIRYNKPEGHVWASV-FKKDDNIILQVKDD 367

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E ++  +   F +   A      G GLGL I + I   H  +  I S L EG  +
Sbjct: 368 GIGIPEDDLNRIFERFYRVDKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTTI 427

Query: 469 IAIL 472
             I 
Sbjct: 428 SIIF 431


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 1370

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 17/329 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P   +++  + +                          L   + +++       DL  
Sbjct: 557 VQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGIAVDLTE 616

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ++   +         AE  N +KS FLA+MSHE+RTP+NAILG   +++   +     + 
Sbjct: 617 QMRR-ERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSEL----PQA 671

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+ I     S + LL++IN+ILD S+IE+GR +L      L  ++     ++      K
Sbjct: 672 AKDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAK 731

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401
            +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V            
Sbjct: 732 PVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQ-GEVTLSVRAFPSPEVGKIK 790

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S++D G GI   +   + + F Q   +      G GLGL I++ ++   GGQ  ++S
Sbjct: 791 LMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQLEVQS 850

Query: 461 KLREGVEVIA-----ILPNTRVLNFIPED 484
               G +        +LP       + E 
Sbjct: 851 TPNRGSDFYFAITFAMLPAPTAEPELSEP 879


>gi|260768861|ref|ZP_05877795.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616891|gb|EEX42076.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
          Length = 796

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 9/258 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q E   LI          +  + +A+    AKS FLA++SHE+RTP+N +LG ++++   
Sbjct: 311 QDEIRYLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS 370

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            + P      ++ +  ++ SG+H++ L+NEILD S+IE G  EL  S+  L  I+     
Sbjct: 371 DLKP----RQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTS 426

Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +      EK ++             ++D+  +RQ++ NLL+NAVKFT   G V V +   
Sbjct: 427 VYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYR-GLVEVILEEE 485

Query: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           +   Q    I ++D G GI +     +   F Q   +      G GLGL I + I     
Sbjct: 486 TVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMR 545

Query: 454 GQFLIRSKLREGVEVIAI 471
           G   + S++  G      
Sbjct: 546 GSVNVVSEVGIGTSFTIR 563


>gi|300703297|ref|YP_003744899.1| sensor hybrid histidine kinase [Ralstonia solanacearum CFBP2957]
 gi|299070960|emb|CBJ42268.1| sensor hybrid histidine kinase [Ralstonia solanacearum CFBP2957]
          Length = 610

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 192/488 (39%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69
           +   + P  + LGL   + ++ D     L          I    VL V  +  ++     
Sbjct: 1   MTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDAGNR 60

Query: 70  PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     G+ W     
Sbjct: 61  LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 120

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++A             
Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 178

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L    +F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 179 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +ET    +  +    Q +  L 
Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 287

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 347

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 464

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 465 AQPRSEQK 472


>gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 660

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKKKLEESEIELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N+  KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654


>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1364

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   GG+  + S    G E   ++   +  +  P+   E
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SSPPQAQRE 881


>gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 706

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 123/260 (47%), Gaps = 12/260 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  ++     ++RAE    AK+ FL++MSHELRTP++ ILG ++++    +    N
Sbjct: 439 ITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGILGMTQLLLESDL----N 494

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  +  + RS   LL ++ +ILD +R++A   +L       + I+R+ + +   +A+
Sbjct: 495 ERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAE 554

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +K +        P+   V  D + ++Q++  L +NAVKFT   G + +     +      
Sbjct: 555 KKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHE-GEIRLATWLDTETPAGG 613

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I + D G GI +    ++   F Q   +      G GLGL IA+ +    GG   
Sbjct: 614 SGRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLS 673

Query: 458 IRSKLREGVEVIAILPNTRV 477
           + S+  +G      +P   +
Sbjct: 674 VESEPDQGSRFTLSIPVQPI 693


>gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
 gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
          Length = 1297

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E+  + AE E         R  A+  N  K  FLA +SHELR+PLN ILG+  +++   
Sbjct: 898  TEQKRIEAEREQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRLLQN-- 955

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             G L+     E +  I R+ +    LI ++LD+SRI  G+  L+ + ISL  ++   I  
Sbjct: 956  -GKLDLPRQTEALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIET 1014

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            ++L A+ KNI+I   +  ++S V  D   ++QV+ NLL+NAVKFT  GG+V V +     
Sbjct: 1015 VRLAAEAKNIQILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQL-D 1073

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            +   I + D G GI    +P V   F Q          G+GLGL I + I+  HGG    
Sbjct: 1074 QLAQIRVSDTGKGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKA 1133

Query: 459  RS-KLREGVEVIAILPNTRVLNFIP 482
             S     G      LP   +   IP
Sbjct: 1134 ESLGEDRGAIFTVQLPV--IQQTIP 1156


>gi|323484400|ref|ZP_08089766.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
 gi|323402178|gb|EGA94510.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
          Length = 1300

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            R+R +  + AK  FL+ MSHE+RTP+NAI+G + +           E  KE +  I +S 
Sbjct: 912  RERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIKIDQSS 968

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            Q+LL+LIN+ILD+S+IE+G+ +L+ +  S++ +  E   +++ + ++KNI   + I    
Sbjct: 969  QYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVEN 1028

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDN 408
              V+AD   ++QVI+NL SNAVKFT  GG++  +V                  + +++DN
Sbjct: 1029 PWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDN 1088

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI+      +  +F Q      +A  G GLGL I+  ++   GG+  + S+  EG   
Sbjct: 1089 GIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRF 1148

Query: 469  IAILPNTRVLNF 480
               L   R    
Sbjct: 1149 SFTLRFIRAEEP 1160


>gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1235

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 16/310 (5%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +  +      +     +   +     +    +     +    I   QA +++LI   ++A
Sbjct: 602 LTFAMATFFDITQRKQAENLLAEYNRTLEAQVKKRTEEFQQVIEQLQATQEELIQSQKIA 661

Query: 232 KSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                   + A     A   KS FLA+MSHELRTPLNAILGF++V+  +      +  ++
Sbjct: 662 AQEQQAAVREAARSAAANLAKSEFLANMSHELRTPLNAILGFTQVMSQDY---SLSSEHQ 718

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  I+R+G+HLLNLIN+IL++S+IEAGR  L+ S+  LI ++     ML LRA  K++
Sbjct: 719 ENLAIINRAGEHLLNLINDILEMSKIEAGRITLNRSSFDLIHLLNNLEEMLYLRAASKSL 778

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------- 400
           ++  +    +   +  DE  + QV+LNLL NA+KFT IGG V + + W            
Sbjct: 779 QLVFEYAHDIPQYIETDENKLFQVLLNLLGNAIKFTDIGG-VTLRLRWEQEEENLSYNPR 837

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +  ++D G GI   EI  +  +F Q  I  KS  QG GLGL I++  +   GG   + S
Sbjct: 838 LFFEVQDTGCGITPQEIGLLFEAFEQTEIGRKSQ-QGTGLGLAISRKYVQLMGGDITVSS 896

Query: 461 KLREGVEVIA 470
               G     
Sbjct: 897 TPGMGSTFAF 906


>gi|325680246|ref|ZP_08159808.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108063|gb|EGC02317.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 1019

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 141/269 (52%), Gaps = 11/269 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++   +  +++LSD     AE+ + AK+ FL+SMSHE+RTP+NAI+G + +       P 
Sbjct: 484 EMRESMAQSRALSD-ALAAAEQASKAKTSFLSSMSHEIRTPMNAIIGLNAIALN---APE 539

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  ++Y+  I  S  HLL+LIN+ILD+SRIE+G+  L     S   ++ +   +   +
Sbjct: 540 LTDKTRDYLEKIGSSANHLLSLINDILDMSRIESGKTVLKNEDFSFSKLLEQINTIFGAQ 599

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
             +K ++   +I  S+ +    D   ++QV++N+L NAVKFT  GG V +TV  T+    
Sbjct: 600 CADKGLDYNCRIIGSVDAHYIGDNMKLQQVLINILGNAVKFTPEGGSVALTVERTAHFDS 659

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                ++I D G G++   +P +  +F Q   +  +     GLG+ I ++I+    G   
Sbjct: 660 RSTLRLTISDTGIGMSSEYLPKLFETFSQEDSSATNRYGSSGLGMAITKNIVEIMNGNIE 719

Query: 458 IRSKLREGVEV--IAILPNTRVLNFIPED 484
           ++S+  +G        L ++      PED
Sbjct: 720 VQSEKGKGTTFIVTVTLMDSAYSESDPED 748


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +    T+L  + +++ + F      FLS
Sbjct: 1196 KRTILVENTPPGYLKISSGLGEAPPAHVIVLPVLFEGTVLGVIELASFTPFTQIQKDFLS 1255

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDL 224
                ++  S   I      ++ L                   +  +     +   EK +L
Sbjct: 1256 QIAEMIGTSVNTISVNSRTELLLKQSQEMTEQLRERSDELENRQKALQAANAELEEKAEL 1315

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A+     EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 1316 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1375

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +         +    E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 1376 LADNA-DENLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1434

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV- 391
                  +    EK ++   ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G    V 
Sbjct: 1435 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVI 1494

Query: 392  -------------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                               ++    G     S+ D G GIA  ++  +  +F Q      
Sbjct: 1495 RPAGTDVPPAIREQLLEAGSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTS 1554

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1555 RKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1596


>gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 606

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 118/421 (28%), Positives = 189/421 (44%), Gaps = 16/421 (3%)

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT-L 126
                  WS        A  ++   +  +         W   L        L   ++  L
Sbjct: 157 PAEPPLAWSAALAMPVFAVTAICHVLSLALEFRRREGSWNDRLQQASARNALLLDVIDDL 216

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVL 185
           V         +   + A  L   +   L    L   + +   P  + A+S    +   V 
Sbjct: 217 VTWHDRGGGVVQASRGALRLAGAAPQTLLGRGLLGRIHVQDRPAFLKAISDAGSLDGPVT 276

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
                     A      + +   +++      +A      A + V + +S++ R+ AEE 
Sbjct: 277 VQVRLHTDLAASGEAGRVIWVEMRAHRVPPGARAGAPHHSAVVAVTRDVSEQ-RRHAEEM 335

Query: 246 NLA----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             A          KSRFLA +SHELRTPLNAI+GFSE++  E    L  E  +EY   IH
Sbjct: 336 EQARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAEANLALPPERQREYAAIIH 395

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+HLL ++N +LDL++I++G ++ +     L  +V  C  ++QLRA +  IE+ + + 
Sbjct: 396 GSGRHLLEVVNALLDLTKIQSGSFDFAPEPFDLRALVNGCCDLMQLRADQGGIELMRDVP 455

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             L  + AD +  RQ+++NLLSNAVKFT  GGR+ V V     R   +S+ D G GIAE 
Sbjct: 456 RDLPELTADPRACRQMLINLLSNAVKFTPRGGRITVAVRAIYDR-IEMSVTDTGVGIAEA 514

Query: 416 EIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++P +   F Q   +       +G GLGL + + ++  H G+ L+ S +  G  V+ +LP
Sbjct: 515 DLPRLGDPFFQAGDSAAYARMHEGTGLGLSVVRGLVGLHDGELLLESSVARGTRVVVVLP 574

Query: 474 N 474
            
Sbjct: 575 L 575


>gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 969

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 96/263 (36%), Positives = 153/263 (58%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +     +      ++     ++ AE  N  KS FLA++SHE+RTPLNAILGF+EV+ 
Sbjct: 705 RRFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMM 764

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E  GP+ NE Y++Y+ DI  SG+H+++L+ ++LDL++IEAG  +LS + ++L D+V   
Sbjct: 765 EEQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGAS 824

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + ++Q +A  + + +       L  V AD + MRQ  LNL++NA+KFT  GG+V V+   
Sbjct: 825 VSLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAM 884

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T   G  + ++D G G+   EI T L  F Q + A     +G GLGLP+ ++++  + G 
Sbjct: 885 TDRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGT 944

Query: 456 FLIRSKLREGVEVIAILPNTRVL 478
             + S+  EG  V  + P  RVL
Sbjct: 945 LRVTSRKHEGTLVEVLFPPARVL 967


>gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5]
          Length = 743

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 15/254 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +      ++RAEE N  K+ FLA+MSHE+RTPLNAI+GFS+++  E     + 
Sbjct: 503 ITALKQTEQELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTE----EDP 558

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY   +  +   LL +I+++LDLSRIE+G  +L  +   L  + RE +   +L+  
Sbjct: 559 EVRKEYNDIVSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTP 618

Query: 345 EKNIEIFQKIDPSLSSVWADEKG--MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           E   E+   ++  L S    +    + Q++ N + NA+KFT   G V V       R   
Sbjct: 619 E---EVVLDVEKGLPSCTVCQYRQGLMQILANFIRNALKFTPK-GFVTVGFERKRDR-LS 673

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI   E+  +   F +      +  QG GLGL I +SI    G Q  + S +
Sbjct: 674 LYVRDTGIGIPAEELDKIFERFYKVD----TFTQGTGLGLSICKSIAEQMGAQIGVDSAV 729

Query: 463 REGVEVIAILPNTR 476
            EG      +P   
Sbjct: 730 GEGSCFRVEMPIAE 743


>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 32/312 (10%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                       +              + Y L+ + + I+  + +  ++           
Sbjct: 240 ICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEM----------- 288

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E + RAE  ++AKS+FLA++SHE+RTP+N ILG   ++    +      T ++Y     
Sbjct: 289 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS----TQRDYAQTAQ 344

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
             G+ L+ LINE+LD ++IEAG+ EL     +L  I+ + + +   +++ K +E+   + 
Sbjct: 345 ACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVS 404

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------ 402
             +   V  D    RQ+I NL+ N+VKFT   G + V V                     
Sbjct: 405 DKVPEMVIGDPGRFRQIITNLVGNSVKFTER-GHIFVQVHLAEHTKALMDAKAETSSEKV 463

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S++D G GI       V T F Q   +      G G+GL I++ ++   GGQ    
Sbjct: 464 TLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFI 523

Query: 460 SKLREGVEVIAI 471
           S+ + G      
Sbjct: 524 SRPQIGSTFSFT 535


>gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 548

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 151/271 (55%), Gaps = 4/271 (1%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNA 266
           +S ++    Q   +  + +  +++   +  R  AE    N  K  FLA +SHE+RTPL+A
Sbjct: 124 QSVIQQAHIQQRNELSLLKDRLSRQNVELARTNAELRRANRLKDEFLAGISHEVRTPLSA 183

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG +E++  + +GPLN+E   E +  I  SG+HLL +IN++LDL++IEAGR+EL    +
Sbjct: 184 ILGLAELLRAKIVGPLNDEQV-EMLSRIEASGRHLLAVINDLLDLAKIEAGRFELEPRLV 242

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +   + R  ++M++  A  K+  +   +DP +  + ADE+ +RQ ++NLLSNAVKFT  G
Sbjct: 243 AAHQVCRSSLLMVKELALRKHQRVHINLDPKVEVLHADERRLRQALINLLSNAVKFTPPG 302

Query: 387 GRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           G V + +     +    I++ D G GIA  +IP +   F Q     +  + G GLGL + 
Sbjct: 303 GDVGLDLEGDPEQEIVRITVWDTGIGIAAEDIPRLFQPFSQIQNKYQHDQAGSGLGLVMV 362

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   HGG   + S+  +G      LP TR
Sbjct: 363 ARLAELHGGGVSLVSEPGKGSRFTMTLPWTR 393


>gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 780

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 5/274 (1%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +   KI+    E+     E           R +AE  N  K  FLA++SHELR+PLNA+L
Sbjct: 363 RGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPLNAML 422

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+  ++                +  I RS +    L+ ++LD+SRI  G+  L+   + L
Sbjct: 423 GWLRLLNTRKFDEKTTAK---AMETIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVEL 479

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           + ++   +  ++  A+ K I +    D +   V  D   ++Q++ NLLSNAVKFT  GG+
Sbjct: 480 VTVIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQ 539

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V +   +     IS++D G GI    +P V   F Q   +I     G+G+GL I + +
Sbjct: 540 VQVYLERVNSH-VEISVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLAIVRHL 598

Query: 449 MANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
           +  HGG    +S+   +G      LP   +   +
Sbjct: 599 VELHGGSVRAQSEGEGKGATFTIKLPLMPIRQNL 632


>gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1478

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 226  AELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            A+ E  + L  E   R+ AE  N  K  FLA +SHELR+PLN ILG+++++     G  +
Sbjct: 1081 AQEEQKRLLEREKLAREEAERVNRIKDEFLAVLSHELRSPLNPILGWAQLLRS---GSFD 1137

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                 + +  I R+ +    LI ++LD+SRI  G+  L+ + ++L   ++  I  ++L A
Sbjct: 1138 KANQNKALEIIERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSA 1197

Query: 344  QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            Q K+IEI   +   +  +  D   ++Q++ NLLSNA+KFT  GG++ + +   + + Q I
Sbjct: 1198 QAKSIEIKTNLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQ-I 1256

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            ++KD+G GI    +P V   F Q          G+GLGL I + ++  HGG     S   
Sbjct: 1257 TVKDSGKGIDPQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGE 1316

Query: 463  REGVEVIAILPN 474
             +G   I   P 
Sbjct: 1317 NQGSTFIVQFPL 1328


>gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 796

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 16/274 (5%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +   +  AE    + +L        E  K+AE  N AK+ FLA+MSHE+RTPLNAILGF
Sbjct: 485 AIAQANLLAENKKQLEKLNQQNIQLQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGF 544

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++  + + P N      ++  I  S  +LL LIN+I +L R+E+G  ++    ++L +
Sbjct: 545 SDLLSQKIIDPENV----NHLQSIIFSSNNLLALINDIFELIRLESGIVKVESETVNLTE 600

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389
           I+R+       +A +KNI++   ++ ++  +   D+  + Q+I NLLSNA+KFT   G V
Sbjct: 601 IIRQIYYKFSEKANQKNIKLIVNLNKNIPDILEFDKLKLYQIINNLLSNAIKFT-KLGSV 659

Query: 390 HVTV----------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            V V                   I IKD G GI++ +   +   F Q S       +G+G
Sbjct: 660 KVDVWANYFQSDLKTRQENCSIVIRIKDTGIGISQEKQKIIFDRFTQVSQETNREYEGIG 719

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL + Q ++    G   + S+L +G  +   LP
Sbjct: 720 LGLTLTQKMIQLLEGNLKLESELEKGTTITVTLP 753


>gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 479

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 153/327 (46%), Gaps = 13/327 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITY 205
           L + A+      Y + ++       +    ++S  V  I +   +  ++  L   + I  
Sbjct: 159 LIMGAVFMHSPLYEINMALESAYRFIWLSLLISASVATILIYWISQRISQPLIEMSDIAK 218

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            + K +    +  + KD++         +++      E     +  F++S+SHEL++PL 
Sbjct: 219 SMSKGDFSQKATVSSKDEVGQLATSFNKMAE----ALENLEDMRRGFVSSVSHELKSPLT 274

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I GF + I     G +  E   +Y+  +      L  +I E+L+LSR+E+ +++L+ S 
Sbjct: 275 SIRGFVQGILD---GTIPTEEQTQYLTIVLEETDRLNKIIKELLELSRMESSQFQLAMSN 331

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             + +++R  ++  + R ++K +++    +     V AD+  + +V++NL+ NA+KFT  
Sbjct: 332 FDVNELIRRVLLKQEKRIEQKELDVQIDFEQDRCMVEADKDRIEEVLINLIDNAIKFTPE 391

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            GR+ V+     G   YIS+ D+G GI+E ++P +   F     +   A    GLGL I 
Sbjct: 392 KGRLIVST-RVEGNKVYISVSDSGIGISEEDMPHIWERFYTADKS--RASGSTGLGLSIV 448

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + I+  H     ++S   +G      L
Sbjct: 449 KRIIEQHRQSIWVKSIPGKGTTFTFTL 475


>gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 987

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +   ++L+ A    +E        RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++
Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P+     K Y   I+RSG+ LL ++N++LD S+IEAG  E+      L  +V +
Sbjct: 496 IDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
              ++  +AQEK +     I+  +   W  D   + QV+ NL+ NA+KFT  G   ++V+
Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVS 611

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +           + D G GIA+ +  T+  +F Q    +     G GLGL I++ I+   
Sbjct: 612 LNPEDETQVLFEVSDTGIGIAKKDQKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GG   + S    G      +P        P +       +C
Sbjct: 671 GGCLEVDSDEGHGSRFWFSIPLE---ESEPVETVSIASARC 708


>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 682

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 9/276 (3%)

Query: 209 KSNVKILS-CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           + +  +L    A  +DL  + E A   + +    A   N AKS FLA MSHE+RTPLN +
Sbjct: 125 REHYAMLRQANAAMEDLNTQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGV 184

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G + V+E   +    ++  +E +  I  SG+ LL ++N+ LD S+IEAGR EL +    
Sbjct: 185 IGMTGVLEATEL----DDEQRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFD 240

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L     E   +L  +A  K +E+   +       +  D   +RQ+ +NLL NAVKFT  G
Sbjct: 241 LRGCAEEAAELLAGKAFAKKLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAG 300

Query: 387 GRV-HVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             V  + V    G    +   ++D G GIA  +   +  SF Q   +      G GLGL 
Sbjct: 301 EIVLQIRVLEFDGEAYALQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLA 360

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           I++ +    GG   + S++  G   +  +   R   
Sbjct: 361 ISKRLAELMGGTMWVESEVGRGSAFLFTIRARRADP 396


>gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 1370

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L +    + S Q E  +    L  A+ + +E  K  E  +  KS FLA+MSHE
Sbjct: 620 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 679

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S++      G L      E    I+ SG  LL+LINEILDLS++EAG+ 
Sbjct: 680 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 738

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           +L    + L  + ++ + + Q  A +K ++      P+L   +  D + ++Q++ NLL+N
Sbjct: 739 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 798

Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           A KFT   G V +            +          S+KD+G GI + +   +  +F Q 
Sbjct: 799 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 857

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +      G GLGL I++ +    GG+  ++S+  +G     I P  
Sbjct: 858 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 905


>gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
 gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1333

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  ++V ++  G       L E        L I     +L  + +
Sbjct: 602  RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 661

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208
            ++++ F      FL      + ++   I++    D  LA    +     +    +     
Sbjct: 662  ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 721

Query: 209  KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
            +        + +   L A+    E      ++ R+  E         +  KS FLA+MSH
Sbjct: 722  ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 781

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 782  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 840

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   ++L  ++       +    +K +E      P   + +  D+  +RQV+ NLLS
Sbjct: 841  MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 900

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V + V                      +KD G GI E  + ++  +F Q
Sbjct: 901  NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 959

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG   + S    G      LP  R
Sbjct: 960  ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1009


>gi|225175428|ref|ZP_03729423.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169180|gb|EEG77979.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 546

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 10/364 (2%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
             A+ +        E    +     I+  A L++ + I  +    L  A       + V+
Sbjct: 185 AGALSVVINAQPYYEELYRSIGQQVIFVLALLVVIIGILYVLQRKLVTAPLEGLAAMTVS 244

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L      S     ++  G +      F  ++  L      +     E+   + E +   +
Sbjct: 245 LGQGDFSSTD-SPVNGQGEIRILEERFRTMSRELAGIYQGLEQKVKERTVELEEEKEKLA 303

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +      E+ N  +S FLAS+SHELRTPL+ IL F E++E            ++ + D
Sbjct: 304 RIN---HDLEKMNRLQSEFLASVSHELRTPLSCILAFIELLEAPAFAH----QRQQNLAD 356

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  S + LLN++N +LD +++EAG  E         +IV+  I      A+EK++ +   
Sbjct: 357 LKSSSEKLLNMVNNLLDTAKLEAGAIEPDIQEHRADEIVQGTIKAFMPLAREKSLTVTSD 416

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPG 411
           I+P L  V  D + +RQV++NLL NAVKFT  GGR+ V V       +     ++D G G
Sbjct: 417 IEPGLPRVKCDVERVRQVLVNLLGNAVKFTDPGGRITVRVNSEGKTQQYVVFRVEDTGAG 476

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+  E   +   F QG++ +   + G GLGL +++ ++   GG+  + S+  +G      
Sbjct: 477 ISREEKEVIFQRFRQGAVPVNKKQAGSGLGLYLSKGLIEMQGGEIGLESEPGQGTAFWFR 536

Query: 472 LPNT 475
           LP  
Sbjct: 537 LPAA 540


>gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1180

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 19/259 (7%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D I     A+      R+ AE  N AKS FLA+MSHE+RTP+NAI+G +++    ++   
Sbjct: 643 DDITAQRRAQDDLMRAREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDITLQTSLTT- 701

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+  +  S QHLL +IN+ILDLS+IEA +  L      L   VR  +  L+++
Sbjct: 702 ---EQRDYLKTVMDSAQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTTLKGLEMQ 758

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A++K ++   ++D  +   V  D   +RQV++NL+ NA+KFT   G + V V     +  
Sbjct: 759 ARQKGLDFVLELDQDVPACVKGDPLSLRQVLMNLVGNAIKFTHK-GSIRVLVSPAQAQPD 817

Query: 400 -------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                  G    + D G GI E  + T+  SF Q       A  G GLGL I + ++   
Sbjct: 818 ADDQRTVGVRFEVADTGIGIPESFMGTIFQSFSQ----TTRAFGGTGLGLAICKQLIGLM 873

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GG   + S +  G     +
Sbjct: 874 GGDISVTSTMGRGSVFSFV 892


>gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 902

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 14/317 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               +    V +  L         F TY TY L +      +   +  + I E +     
Sbjct: 366 VIPYVREHGVWEGELQAKSLDGHIFATYETYFLLRDENGKATSVGDIMNDITEQKYVSME 425

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            ++ ++ AE+ + AKS FLA+MSHE+RTPLNAI+G++++I  +    L   +   ++  I
Sbjct: 426 LEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLISED--NQLTGVSRTRFLS-I 482

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G  LL LIN+ILD++RIE+GR  L E  ++L   V +   + Q +AQEK +E+  + 
Sbjct: 483 ASAGHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQGQAQEKGLELIVEC 542

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           D      VW D    +Q+I NLL NAVKFT   G V   V     R  +ISI+D GPGI 
Sbjct: 543 DIDERRFVWIDPVKFQQIITNLLGNAVKFTDQ-GYVKAVVQIVEDR-IHISIEDTGPGIE 600

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +  + T F QG      A  G GLGL ++ +++    G   ++S    G ++I  LP
Sbjct: 601 AELMDHLFTPFIQGKAGE--ASGGTGLGLSLSTTLVKLMNGTLSVKSSEGVGTQIIVDLP 658

Query: 474 NTRVLNFIPEDNHESTQ 490
            ++V      ++ EST 
Sbjct: 659 LSKV------EDSESTD 669


>gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586]
 gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586]
          Length = 967

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 22/302 (7%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------------- 235
           +   +A A      +              Q  K+ L   +E                   
Sbjct: 396 MGQAIAHARDTAKALKVVAESEVRAKRELQQHKEHLEELVEQRTHQLSDMNHKLNQEVLN 455

Query: 236 -DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++  ++      T + Y+  I
Sbjct: 456 HAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTS----TQQHYVQVI 511

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           +RSG+ LL ++N++LD S+IEAG  E+ ++   L  +VRE   ++Q RA EK I++  + 
Sbjct: 512 NRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQF 571

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGI 412
              ++  W  DE  + QV+ NL+ N +KFT   G V + +    +G+G    ++D+G GI
Sbjct: 572 ADGVTQFWQGDEIRIGQVLNNLVGNGIKFTEQ-GEVCIQICQDPAGQGIRFEVQDSGIGI 630

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A+ E  ++  +F Q        + G GLGL I++ ++   GG+  + S+  +G      L
Sbjct: 631 AQEEQASLFDAFTQAEAGR-RKQGGTGLGLAISRKLVQAMGGEMRLSSEQGQGSCFSFTL 689

Query: 473 PN 474
           P 
Sbjct: 690 PL 691


>gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
 gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
          Length = 827

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 6/285 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++   ++      +  I E++  +S  +    +A   N AKS FLA+MSHE+RTPLN +L
Sbjct: 421 RNEQGVVERFIAIERDITEVKRLESDLETEALKARRANEAKSAFLATMSHEIRTPLNGLL 480

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  +++  +          ++ +     SG+HLL+++N+ILDL+++E+    L      +
Sbjct: 481 GMLQILNDDIRDL----EQRKVLRLALNSGEHLLSILNDILDLAKVESDALALDIHPFKM 536

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            DI+    +  Q    EK I                D   +RQV+LNL+ NA+KFT   G
Sbjct: 537 ADIITPVEVTYQGLCSEKGIVFNVDNHCSDDCYYCGDSVRIRQVLLNLVGNALKFTKT-G 595

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            ++V +           ++D+G GI +  + ++   F Q  ++      G GLGL I Q 
Sbjct: 596 HINVCIKALESPFVEFCVEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTGLGLAICQK 655

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           ++    GQ  + S L +G +   ++     L  + E+  E  + K
Sbjct: 656 LVTLMNGQISVESGLGKGSQFRFVISLPSDLGEVIEEKTEDVKGK 700


>gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8]
 gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8]
          Length = 1111

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +S        +   + +++   +    L+ +    +      ++ AE  N  KS FLA
Sbjct: 818  GTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLA 877

Query: 255  SMSHELRTPLNAILGFSE--------VIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +MSHE+RTPL +I+GF+E        ++E     P       ++   I  SG  LL  ++
Sbjct: 878  NMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLD 937

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
             +L+LSR+EAG  EL  S + L D V E   + + +A  + I++  +          DE 
Sbjct: 938  TVLNLSRLEAGEMELDCSPLDLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEG 997

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            G+R  + NL+SNA+K+T  GG V V  G        + ++D G G+    +P +   F Q
Sbjct: 998  GLRIALQNLISNALKYTEEGGTVRVRAGRRGDD-VALEVEDTGVGMDPDHVPELFEPFRQ 1056

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             S       +G GLGL + +  +   GG   + +   +G      +P     +
Sbjct: 1057 ESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGDGSCFTVRVPAADAPD 1109


>gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
 gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
          Length = 591

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K +++ 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + V  T   G    ++D+G G
Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTENSGLTFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           I E +IP +   F +   A    ++ G GLGL IA++I+  H G+  + S + EG     
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSV 584

Query: 471 ILPNT 475
            LPN 
Sbjct: 585 YLPNR 589


>gi|311748342|ref|ZP_07722127.1| sensory box histidine kinase PhoR [Algoriphagus sp. PR1]
 gi|126576851|gb|EAZ81099.1| sensory box histidine kinase PhoR [Algoriphagus sp. PR1]
          Length = 358

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 163/349 (46%), Gaps = 12/349 (3%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              ++IAL+IS L    L      +   ++VA      +S  +++I+L  ++   +    
Sbjct: 7   GIAVIIALAISMLVAAFLSLLDTTTATILMVAGGISFSVSYLLINITLEFLVFREIGNIY 66

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA------KSRFLAS 255
            +   + K  +   S ++ K  +     + K ++     R +E +        +  F+A 
Sbjct: 67  TLLEKIQKKELSEFSDKSSKSSISPLRRINKVINSYALARQKEIDTLQKNAEFRREFIAD 126

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TP+ A  G+   +    +   + E   +++    +S   L  L+ ++L L+++E
Sbjct: 127 ISHELKTPIFATQGYIHTLLDGAID--DKEVRMKFLKRAAKSLDSLDVLVQDLLTLNQME 184

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374
           +G  + + +   L D++ E I  L+ +A ++ +++  + D     +  AD++ + +V  N
Sbjct: 185 SGVIKFTFTQFDLKDLLLEVIDQLEHKASKRKVDLVFQYDEKEDYITSADKQKIYRVCQN 244

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NAVK+    G+V V++  TS    ++ IKDNG GI   ++  +   F +   +    
Sbjct: 245 LIFNAVKYNNNQGKVKVSLK-TSKHNLHVEIKDNGQGIPPEDLKRIFERFYRVEKSRNKK 303

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           E G GLGL I + I+  H  +  + S + +G      LP   V   +PE
Sbjct: 304 EGGTGLGLAIVKHILEGHKSKISVSSTVGKGSIFSFSLPL--VKQVLPE 350


>gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 1370

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L +    + S Q E  +    L  A+ + +E  K  E  +  KS FLA+MSHE
Sbjct: 620 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 679

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S++      G L      E    I+ SG  LL+LINEILDLS++EAG+ 
Sbjct: 680 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 738

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           +L    + L  + ++ + + Q  A +K ++      P+L   +  D + ++Q++ NLL+N
Sbjct: 739 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 798

Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           A KFT   G V +            +          S+KD+G GI + +   +  +F Q 
Sbjct: 799 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 857

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +      G GLGL I++ +    GG+  ++S+  +G     I P  
Sbjct: 858 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 905


>gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 977

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPLN I+G +E++    +        ++++   + S   LL++IN+ILD
Sbjct: 398 DFLANMSHEIRTPLNGIIGLTELVLKTDL----EPKQRDFLEKSNLSSHALLDIINDILD 453

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            S+IEAG+++L      L ++++  + + + +A +K I +   I  + + +  D   + Q
Sbjct: 454 YSKIEAGKFDLENKPFELNNVIQNIMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQ 513

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++ NL+ NAVKFT   G + + V  T           S++D G G+       +   F Q
Sbjct: 514 ILTNLVGNAVKFT-ESGHIGIRVISTDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQ 572

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +I     G GLGL I++ ++   GG   + S+   G   I  
Sbjct: 573 ADTSITRKYGGSGLGLAISKQLVQMMGGDIWVESEEGIGSRFIFT 617


>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 735

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA+MSHE+RTP+NAI+G +++     + P      K Y+  +  +   LL++IN
Sbjct: 354 QAKSEFLANMSHEIRTPMNAIIGLAQLTLETRLDP----QQKSYLERLRNASTALLSIIN 409

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S+IEA + E++   ++L DI+++ + + Q  A+EK +++  +I   +   +  D 
Sbjct: 410 DILDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDP 469

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422
             + QV+ NL+SNAVKFT  G   V   +     +   I   + D G GI + +   +  
Sbjct: 470 LRLGQVLNNLISNAVKFTERGSVTVRAELADRDDQQVIIRILVSDTGIGIDKEQSERLFQ 529

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480
            F Q   +I     G GLGL IA++++   GG   + S   +G        L     +  
Sbjct: 530 PFTQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGSTFAFTTRLDLAATVPS 589

Query: 481 IPEDNHEST 489
            P+    + 
Sbjct: 590 QPDQPQHTP 598


>gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
 gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
          Length = 586

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 123/247 (49%), Gaps = 7/247 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     ++ F++++SHEL+TPL +I+GF + ++   M   + +T + ++  I     
Sbjct: 347 RRLE---QMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAM--EDADTARHFLDIISIESG 401

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+ +IL LS IE+   +++ S ++L +I R+   +L+ +A +K +    +++ +L 
Sbjct: 402 RLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLP 461

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
               +   + Q+++N++ NAVK+T  G  +        G    I + D G GI   ++  
Sbjct: 462 PFACNRDRISQMLINIIENAVKYTEHGSVIT--TIEKRGDNLKICVSDTGIGIPADQLDR 519

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           V   F +       +  G GLGL I + I+  + G   + S++ +G E    LP  R   
Sbjct: 520 VFERFYRVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGSEFTIFLPYRRASK 579

Query: 480 FIPEDNH 486
               ++H
Sbjct: 580 RPLTEDH 586


>gi|169616908|ref|XP_001801869.1| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
 gi|160703288|gb|EAT81339.2| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
          Length = 1239

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 701 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 760

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +
Sbjct: 761 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 816

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V V
Sbjct: 817 FNALKSLASRANERKLNLAYDVSYKVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVKV 875

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +     +           ++ D G GI   ++  +  +F Q   +      G GLGL I
Sbjct: 876 AISMAQDQDCGADQYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 935

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG+  + S   +G      
Sbjct: 936 SKRLVTLMGGRMWVESDFGKGSVFYFT 962


>gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing
            protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator
            motifs [Rhizobium leguminosarum bv. viciae 3841]
          Length = 2099

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 167/392 (42%), Gaps = 24/392 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +LV  +   +      +      +   L ++    +   + +++   F      FL 
Sbjct: 1277 ARRILVTDLPDNVVPISSGVFMTLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLD 1336

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + +   +I +    +  L      A +        L ++N ++     + ++   
Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395

Query: 227  ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN+IL   + +     
Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ +   E+   IH +G  LLNLI++ILDLS+IE+G   +    IS+ +++       
Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEISVSNLLEVMARPF 1514

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ +N+    ++   ++  +  D K ++Q++ NLLSNA KFTA GG V + V   + 
Sbjct: 1515 RHEAENRNLSFAVEVGADITKSIITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573

Query: 399  RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                               + D G GI   +   +  +F Q   +      G GLGL I+
Sbjct: 1574 GWSSDHPSLKHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            + +    GG+  +RS    G   +  LP T V
Sbjct: 1634 RELANLLGGEIQLRSTPGVGSTFVLYLPLTYV 1665


>gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010]
 gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010]
          Length = 1177

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   + +  +     +     L  ++       ++ +  A E +  KS F+A++SHE+RT
Sbjct: 474 IIRDITEQILDKKQLENLNSSLEEQVRTRTEELEKAKNEAIEASNMKSGFVANVSHEIRT 533

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILG   +++ E +    NE  + Y+    +S + LL LIN+ILDLS+IEAG+ E+ 
Sbjct: 534 PLNGILGMHNLLKRENL----NEKQESYLQMATQSAKSLLMLINDILDLSKIEAGKLEIE 589

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVK 381
              I+LID   +    + +RA +KN+EI   +     + V  D+  +RQ++ NL+SNA+K
Sbjct: 590 SLPINLIDSFSQAANSMAVRAMDKNVEIVLDLADIKHTVVIGDDLRIRQILNNLISNAIK 649

Query: 382 FTAIGGRVHVTVGWTSG--RGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   G + V+   T      + I   S++D G GI + ++  +  +F Q   +      
Sbjct: 650 FTDK-GEIIVSAATTEDVAGARVILDVSVQDTGVGIDKAKLNQLFKAFSQEDSSTTRKYG 708

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL I  ++ +   G+  + S+   G      L    +    
Sbjct: 709 GTGLGLSIVSNLCSLMNGECHVESEKNVGSTFSFRLSLKPIEKEQ 753


>gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 596

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +       
Sbjct: 457 LAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
           R    I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 577 SVESELGKGSDFIITLPLYK 596


>gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 609

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 23/315 (7%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD------------------ 222
                   LA    + + +       L      ++  +A+                    
Sbjct: 147 QQPPSAWRLADDSGSVMGWLIIAAAPLSSDRESLIESKAQLRSQLMSRSANYCTTALVQL 206

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +        + +  E  N  K++FLA+ SHE+RTPL++I+GF+ ++      P 
Sbjct: 207 RHILSWQQQYQQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEP- 265

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +EY+  I  SG+HLL LIN+ILDLS+IEA + E+    + +  +    + +++ +
Sbjct: 266 TIERQREYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEK 325

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQ 401
           A  K++ +  +IDP ++++ AD   ++Q++LNLL NA+KFT+ G    V +   +     
Sbjct: 326 AANKDLRLCLEIDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS---VGLQVVAKGISV 382

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           + ++ D G GI++ +   +   + Q + A+    +G GLGL + + +   HGG   + S+
Sbjct: 383 HFTVWDTGSGISQEDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESE 442

Query: 462 LREGVEVIAILPNTR 476
           +  G     +LP  +
Sbjct: 443 VDSGSRFTLVLPLQQ 457


>gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 576

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 LIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569


>gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
 gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
          Length = 781

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +      +  AEE   AK++FLA +SHE+RTPLN I+G S+V+    + P
Sbjct: 362 ERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLSGPLDP 421

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                ++  +  I  SG+ LL +IN+ILDLS++EAG+ E+ +    L   ++  + +++ 
Sbjct: 422 ----EHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRP 477

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
            A EK + +   +       +  D   +RQV LNL+ NA+KFT   G V +     +G  
Sbjct: 478 LANEKGLSLSVDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRA-GAVSLRAAVDTGAA 536

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                ++++D G GI    +  +  +F Q   A      G GLGL I++ +    GG   
Sbjct: 537 PPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDIT 596

Query: 458 IRSKLREGVEVIAIL 472
           + S   +G       
Sbjct: 597 VTSVPGKGSCFTMEF 611


>gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 499

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLNAI+G+SE++  + +     E  +  +  IHR+G HLL LI++I
Sbjct: 245 KSTFLANMSHELRTPLNAIIGYSELLIEDAVDA-QEEDLESDLRRIHRAGTHLLGLISDI 303

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAG+ +L     +L  ++ +  + +   A ++      +      S++AD   +
Sbjct: 304 LDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSGQPGSIYADPVRV 363

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEI 417
           RQ+++NLL NA KFT   G + + +                      + D G G++E ++
Sbjct: 364 RQILINLLGNACKFT-ENGTISLRIAIEGDDYAAGHDKSTGNAILFEVTDTGIGMSEDQM 422

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q   +      G GLGL + +      GG   + S+L +G   +  LP    
Sbjct: 423 ARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQGSTFMVRLPMRDP 482

Query: 478 LN 479
             
Sbjct: 483 EE 484


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 153/279 (54%), Gaps = 21/279 (7%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L    ++ +L+A+ +       E ++ A+  NLAKS FLASMSHELRTPLNAILGF++
Sbjct: 709 SQLGVAVQQAELLAKTQQQAQELQEAKEAADAANLAKSEFLASMSHELRTPLNAILGFAQ 768

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++            + +Y+  I R+G+HLLNLIN+IL++S+IEAGR  L+E    L+ ++
Sbjct: 769 LM---NYDSSIKVEHHQYLEIISRAGEHLLNLINDILEMSKIEAGRVTLTEDDFDLLHLL 825

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                ML L+AQ K + +  ++D +L   V  DEK +RQV++NLL NA KFT   G V +
Sbjct: 826 ENLEKMLCLKAQSKGLLLTFELDETLPQWVRGDEKKLRQVLINLLGNATKFT-ESGCVTL 884

Query: 392 T--------VGWTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
                    V  T               + D G GIAE E+  +  +F Q +  +KS  +
Sbjct: 885 RSFRVNQAKVRETENSLIKNDALRIRFEVADTGLGIAENELKRLFQAFSQTTTGLKSG-E 943

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL I+Q  +   GG+  ++S++  G      +P +
Sbjct: 944 GTGLGLSISQQFVQLMGGEITVKSQVNVGSTFAFEIPMS 982


>gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 788

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 106/285 (37%), Positives = 152/285 (53%), Gaps = 12/285 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDET------RKRAEEENLAK 249
            T I  H  K     L  +A   DL          A  L+D        + RAE+ N AK
Sbjct: 478 ITRIKEHEQKLVENDLRLRATVIDLKRTQATLERQALKLADLAQKYADQKNRAEDANRAK 537

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHELRTPLNAI+GFSE++     G L ++ Y EY  DI  SGQ+LL +IN++L
Sbjct: 538 SKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVL 597

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S+IEAGR  L   A  L  ++ E + ++  R  +K++    + +  + S+ AD + ++
Sbjct: 598 DMSKIEAGRMNLDMEAFDLTGVLDESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVK 656

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA+KFT  GGR+             ++I D G GIA   +  +   F Q   
Sbjct: 657 QILVNLLSNAIKFTPDGGRIMARSKIFE-NFITLTIADTGIGIASHALRKLGKPFEQVES 715

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     G GLGL IA+S++  H G   +RSK   G  V   LP 
Sbjct: 716 QLTKTHAGSGLGLAIAKSLVNLHNGSMKLRSKPGVGTVVRVTLPR 760


>gi|116621999|ref|YP_824155.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225161|gb|ABJ83870.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 626

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 21/395 (5%)

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S ++ G +    +  L+G   +     +L           Y+ +  +   L     +   
Sbjct: 5   SLLRRGRLRAAGLIYLLGIWVMSTGIIVLNRGIHSVGLVYYVALPVTGAWLFGFQGALRI 64

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKI 214
                 +  +     +  L              ++        +        L K  + +
Sbjct: 65  AAGCVGSALVLALLEMAGLPLPTYFPERPFGIWTMVAAATVMTTVPVARVLQLLKQTLTM 124

Query: 215 LS-----CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                   +  +  L   ++   +   E R +A+  + AKS FLA+MSHELRTPLNAILG
Sbjct: 125 HRAAQKALREYQSRLEEVVQRRTAELVEARDQAQAASRAKSVFLANMSHELRTPLNAILG 184

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FS+++     GP  +E  ++ +  I RSG HLL++I+E+LD ++IE G     ++A+ L 
Sbjct: 185 FSKLVR---GGPGLSEVQRKDLDIISRSGAHLLDMIDEVLDRAKIETGGVTTKKTAVDLH 241

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +V E + +++ RAQ KN+E   +   +    + +D   +RQV+LNL  NA+KFT   G 
Sbjct: 242 RVVHEVVELMRPRAQAKNLEFVFEHPETYPYCIRSDAGKLRQVLLNLTGNAIKFTQR-GS 300

Query: 389 VHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           V + +      G          + + D G GIA  +   +   F Q       A +G GL
Sbjct: 301 VTLRLWLEPMAGDAPGSQMLLTLDVSDTGIGIAPEDQERIFEPFAQAGNG--GAARGTGL 358

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I++  +   GG   ++S LR G      LP  
Sbjct: 359 GLSISREFVRAMGGSLAVQSILRVGSRFHVELPVE 393


>gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 769

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI + +  +    + +++ EE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 526 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH---- 580

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  +E+   I  + + LL L+N+ILDLS+IEAG+ +   S  ++  + R      Q R 
Sbjct: 581 SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
           ++  + ++ +I      +++++  + QVI N L+NA KFT  G    + +G+     G Y
Sbjct: 641 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI    +P V   F +      S  QG GLGL I Q+I+ N  G+  + S+ 
Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 753 GKGSTFWFTIPCA 765


>gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 769

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI + +  +    + +++ EE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 526 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH---- 580

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  +E+   I  + + LL L+N+ILDLS+IEAG+ +   S  ++  + R      Q R 
Sbjct: 581 SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
           ++  + ++ +I      +++++  + QVI N L+NA KFT  G    + +G+     G Y
Sbjct: 641 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI    +P V   F +      S  QG GLGL I Q+I+ N  G+  + S+ 
Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 753 GKGSTFWFTIPCA 765


>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 744

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/340 (26%), Positives = 158/340 (46%), Gaps = 21/340 (6%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +        +     P ++A  +   M  + +      + A       +  + +   + K
Sbjct: 103 VIGRTFVPDLPEGERPRMLASFSGLSMPPYRIRYDERTLTARGARCIAWEEFAIRDEDGK 162

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           ++  QA   D + + + A+       ++A+E N AKS FLA+MSHE+RTP+N ++G +++
Sbjct: 163 LVEIQAVGRD-VTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKL 221

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    + P      + Y   +  SG+ LLN+IN+ILD S+IEAG+  L E+A    +++ 
Sbjct: 222 LLDTKLDP----AQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLE 277

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               +L  RA +K +EI  +I PS+  +   DE  +RQ++LNL  NA+KFT  GG V + 
Sbjct: 278 SVAELLAPRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGG-VALR 336

Query: 393 VGWTSGR--------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           +                    G  + ++D G G+ E     +   F Q   +     +G 
Sbjct: 337 LLREETSPAGRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGT 396

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           GLGL I + ++    G+  + S+   G    A LP    L
Sbjct: 397 GLGLAITKRLVGAMEGRIEVESEEGRGSVFRAHLPLRLAL 436


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L++        ++ AE  N+AKSRFLA+MSHE+RTPLN +LG +E++   ++    +
Sbjct: 744 ITPLKLTAQELVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSL----S 799

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  + RSG  LL +IN+ILD S+IEAG+ EL +    L  +V E + +    A 
Sbjct: 800 AKQQSLLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAG 859

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E+   I   +  S+  D   +RQ++LNL+ NA+KFTA  G V V           +
Sbjct: 860 NKKLELTYFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQ-GEVTVAFALAEQHADTL 918

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    ++D G GI +     + T+F Q   +      G GLGL I + ++   GG+  + 
Sbjct: 919 TLACRVRDTGIGIPDAAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLV 978

Query: 460 SKLREG 465
           S   +G
Sbjct: 979 SAPGQG 984


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            +  +LV     G       L E        L +     +L  + +++ + F      FL+
Sbjct: 1132 KRTILVTDAPSGYLKIASGLGEAPPAQVIVLPVLFEGKVLGVIELASFTPFTQIQKDFLN 1191

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
                ++A S   I      +  L                     K+     +   EK +L
Sbjct: 1192 QIAEMIATSVNTISVNTKTEQLLKQSQELTEQLRLRSEELEQRQKALQASNAELEEKAEL 1251

Query: 225  IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +A+     E   S  +E R+  EE           +S FLA+MSHELRTPLN++L  +++
Sbjct: 1252 LAQQNRDIEAKNSEIEEARQVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKL 1311

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ ++ 
Sbjct: 1312 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLID 1370

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
                  +    EK +++  ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G   + +
Sbjct: 1371 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1430

Query: 392  TVGWT-------------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                           S+ D G GIA  ++  +  +F Q      
Sbjct: 1431 RPARDDVPQAIREQLLEAGSLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 1490

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1491 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1532


>gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
 gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS
 gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
          Length = 1055

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/265 (36%), Positives = 152/265 (57%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  G 
Sbjct: 789  LRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGS 848

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 849  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQP 908

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 909  QANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEMNGDV 968

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------AEQGVGLGLPIAQSIMANHG 453
             + ++D G G+ + E+   L  F Q +   +           +G GLGLP+ ++++  + 
Sbjct: 969  VMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMVEANR 1028

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S    G  V    P TRVL
Sbjct: 1029 AQFAIDSTPGHGTVVEIAFPPTRVL 1053


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1202

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 11/284 (3%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                ++   +   +A  ++++   E  K L    +      + +   FLA MSHE+RTP+
Sbjct: 780  RVSERTAWLLRINRALNEEMLEHKETEKKLLQAQQAAD-AASRSMGEFLAYMSHEIRTPM 838

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N+++G + ++    + P      ++Y+  IH SG  LL++IN+ILD S+I  G+ +L   
Sbjct: 839  NSVIGLAGLLLETNLSP----EQRDYVQTIHSSGDALLSIINDILDFSKINEGKMKLELE 894

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
              SL   +   I M+  +A EK +E+   +D  +  +V  D   ++Q+++NLL NAVKFT
Sbjct: 895  PFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQILVNLLGNAVKFT 954

Query: 384  AIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
               G V + V         + S+ D G GI++ ++  +  SF Q   +      G GLGL
Sbjct: 955  ER-GMVSLEVKMGDEPGMLHFSVTDTGIGISKSDMKKLFHSFSQVDASTSRKYGGTGLGL 1013

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             I++ ++   GG+  + S++  G      +   +V     +D  
Sbjct: 1014 AISRMLVEQMGGRIWVESEMGSGSTFHFQI---KVEESSGDDAS 1054


>gi|319936551|ref|ZP_08010965.1| two-component hybrid sensor kinase/response regulator
           [Coprobacillus sp. 29_1]
 gi|319808349|gb|EFW04909.1| two-component hybrid sensor kinase/response regulator
           [Coprobacillus sp. 29_1]
          Length = 852

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 10/264 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                  ++     ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + +        
Sbjct: 318 QRFFVMTKLQLQELEKARETAIEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHI--- 374

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            N E  K  +  I  S +HLL LIN++LD+S+IE+G+  L+  AISL ++V   II++Q 
Sbjct: 375 DNQEQVKNCLKKITLSSKHLLGLINDVLDMSKIESGKLSLTMEAISLKEVVEGIIIIMQP 434

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
           + + K  +    I+  S  +VW D   + QV+LNLLSNA KFT  GG +  ++       
Sbjct: 435 QVKAKKQKFGIHIEDISTENVWCDGVRLNQVLLNLLSNATKFTPDGGSIDFSLLEEESPK 494

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +I +KD+G G+    +  +  S+ +         +G GLG+ I + I+    G
Sbjct: 495 GENYARIHIIVKDDGIGMTPAFLEKIYESYSRADGRRIHKTEGAGLGMAITKYIVDAMEG 554

Query: 455 QFLIRSKLREGVEVIAILPNTRVL 478
              ++S+L +G E   +L   +VL
Sbjct: 555 TIDVQSELGKGTEFHIVLDFEKVL 578


>gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 1050

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + +VA+    + ++ AE  + AKS FLA +SHE+RTPL AI+G S ++    +   
Sbjct: 514 RDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESPL--- 570

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N    E    I+  G+ LL+LI +ILD+S+IEAG+ +L      L  + R  + ++Q  
Sbjct: 571 -NPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLVQQS 629

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397
           A +K + +  +I P L + +  D   +RQV++NLL NAVKFT   G V + V        
Sbjct: 630 AHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQ-GVVELIVRGHFQAEE 688

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I + D G GI   +I  +   F Q    +     G GLGL I+Q ++   GG   
Sbjct: 689 RYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGTLE 748

Query: 458 IRSKLREGVEVIAIL 472
           + S L  G      +
Sbjct: 749 VSSTLGVGTTFTLTI 763


>gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
          Length = 500

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  I+++     Q+   
Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H    V   +     
Sbjct: 367 VPEIEIKAILPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 481

Query: 463 REGVEVIAILPNTR 476
             G      LP  +
Sbjct: 482 GRGSRFTVTLPLEK 495


>gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 500

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  I+++     Q+   
Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H    V   +     
Sbjct: 367 VPEIEIKAILPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 481

Query: 463 REGVEVIAILPNTR 476
             G      LP  +
Sbjct: 482 GRGSRFTVTLPLEK 495


>gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 254

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 3   IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 61

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  I+++     Q+   
Sbjct: 62  EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 120

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H    V   +     
Sbjct: 121 VPEIEIKAVLPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 179

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 180 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 235

Query: 463 REGVEVIAILPNTR 476
             G      LP  +
Sbjct: 236 GRGSRFTVTLPLEK 249


>gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 990

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   +  +++           L   +   + ++   R    E N AKSRFLA+MSHE+RT
Sbjct: 296 LLNLVEDADLARNQLIETNMKLGESVRKTEEMAKSAR----EANEAKSRFLANMSHEIRT 351

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G S+++   ++        ++Y+  I  SG++LL +IN+ILD S+IEA R EL 
Sbjct: 352 PMNGVIGMSDILLDTSLDI----EQRKYVETIISSGKNLLKIINDILDFSKIEANRLELD 407

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
               +LID++ +   +L   A EK +E+  +  P+L   +  D   +RQ+++NL+SNA+K
Sbjct: 408 HIDFNLIDLLEDVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLVSNAIK 467

Query: 382 FTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  G  V   V       Q     ++ D G GI E    ++   F Q          G 
Sbjct: 468 FTHEGEVVLDAVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIRKYGGT 527

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGL I+  +    G    ++S++  G     
Sbjct: 528 GLGLSISSHLAEKMGSGITVQSRIGTGSVFRF 559


>gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
 gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
          Length = 701

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 3/250 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + +      ++ +  AE+ +LAKS FL+SMSHELR+PLNAILGF +++E E   P 
Sbjct: 284 RDVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESE--SPP 341

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             ++ KE I  I ++G HLL LINEILDLS++E+G+  LS   + L +++ EC  M++ +
Sbjct: 342 PTDSQKESIAQILQAGWHLLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQSMVEPQ 401

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           AQE+ I +      +   + AD   ++Q+++NLL+NA+K+ +  G + V    ++     
Sbjct: 402 AQERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESAPGRLR 461

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ISIKD+G G+   ++  +   F +       +E+G G+GL +++ ++   GG     S L
Sbjct: 462 ISIKDSGAGLTPEQLEQLFEPFNRLGQ-ENGSEEGTGVGLVVSKRLVELMGGTIGAESSL 520

Query: 463 REGVEVIAIL 472
             G      L
Sbjct: 521 GAGSVFWFEL 530


>gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 870

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            V A   + I +    +  L         ++   +    +S    +       + I   +
Sbjct: 560 AVYADLWRTITAGGTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARK 619

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+       + AE+ N AK+ FL+ MSHELRTPL A+LG++E++E    GPL +  + +
Sbjct: 620 AAEDALVAAMQAAEDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPS-QHAD 678

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  I  SG+HLL++I+E+LD+SRIE G Y ++     L  I +EC+ ML+ +   K+I+
Sbjct: 679 FVAAISDSGRHLLSIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQ 738

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +   ++  V  D + +RQV++NLL NAVK+T  GGR+ V +   +G+   + + D G
Sbjct: 739 LDLEEGGAMPLV-TDSRAVRQVLINLLGNAVKYTEAGGRISVGLTR-AGQTLRVVVADTG 796

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA  ++  V   F +         +GVGLGL I + I+    G   I+S+   G  V 
Sbjct: 797 CGIATDKLAHVFEPFQRVDPLRADPARGVGLGLAICRRIVELLHGDIAIQSEPGRGTAVT 856

Query: 470 AILPNT 475
             LP +
Sbjct: 857 LTLPLS 862


>gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 892

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 7/253 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +   S     ++ AEE +  K+ FLA++SHE+RTP+N I+G SE+++   +   
Sbjct: 496 EDITEKKKLWSELIAAKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKDPDL--- 552

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E    YI  I +S Q LL LIN+I+D+SRIEAG+  +  S   +   +R+     +  
Sbjct: 553 SKEEQSLYIDLIDQSCQRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPL 612

Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           A++K + +        S S +  D   + Q++ NLL NA+KFT   G +       +   
Sbjct: 613 AEQKGLRLSCTTGLSDSESVIETDSTKLTQILTNLLQNALKFTRE-GHIDFGYAR-NKNT 670

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+G GI+      +   F Q   ++    +G GLGL I+Q+ +   GG   ++S
Sbjct: 671 LEFYVADSGIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKS 730

Query: 461 KLREGVEVIAILP 473
              +G E I  LP
Sbjct: 731 TEGKGSEFIFTLP 743


>gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
 gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
          Length = 675

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/505 (19%), Positives = 191/505 (37%), Gaps = 45/505 (8%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           I P+   + +       F   +       +     +    V + A  G ++        +
Sbjct: 38  IRPSAWLVAIGAAVAGTF-ARLTLESAAGIRLPFYLAFPVVTVAAWYGGFWPGVVAIACY 96

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
           + + + + A  +          +    V      LL+  +   L               +
Sbjct: 97  AALFVGLAALQI---SPPAQPILPTQLVVFALGTLLICVLCEQLRRARAGAERRARAETQ 153

Query: 136 YLTIYKSATLLIALSISAL------SNFMLPYAVFLSFFP--VVVALSTQAIMSMHVLDI 187
                +     +  S+ +L       +F   +       P  ++     +         +
Sbjct: 154 QRVSQQRLLAALQASLISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQ-----------------------AEKDDL 224
           + AG    A    T + +   + + + +                           E+   
Sbjct: 214 TEAGQQVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITERRQA 273

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++    M P + 
Sbjct: 274 EARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MRPYDE 330

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++      ++  A+
Sbjct: 331 ATFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAR 390

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I +  +  P +  +  D   ++QV  NLL+NAVKFT  GG + V+V  ++      +
Sbjct: 391 QKQIAVDMECQP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASAEGLVA-T 448

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           ++D G GI    +P +   F Q  ++      G+GLGL IA+ ++  H G+    S    
Sbjct: 449 VRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGTD 508

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G  +   LP    LN  P     S
Sbjct: 509 LGTTMAVTLP----LNAPPSSEQSS 529


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1548

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 10/256 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               I+  + +++     ++ AEE    KS FLA+MSHE+RTP+NAI+G + +     + 
Sbjct: 720 ALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTEL- 778

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              +    +Y+  I  SGQHLL ++N+ILD S+IEAG+  +  +   L  ++     ++ 
Sbjct: 779 ---DPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVS 835

Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +A  K +E    +  ++  V   D   + Q+++N  +NAVKFT   G + + V      
Sbjct: 836 EKAATKGLEFVLDVAANVPPVLRGDPLRLGQILINYANNAVKFT-EHGEIVIHVETLETG 894

Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   +++D G G+ + +   +  SF Q   +      G GLGL IA+ +    GG 
Sbjct: 895 DTDVLLRFAVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGG 954

Query: 456 FLIRSKLREGVEVIAI 471
             + S    G      
Sbjct: 955 VGVDSVPGGGSTFWFT 970


>gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
 gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
          Length = 2102

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 12/250 (4%)

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLASMSH+LRTPLN ILG++++++ E          ++ +  I RSG+ LL LIN+IL L
Sbjct: 1641 FLASMSHDLRTPLNGILGYAQILKKE---KNITPPQRDGLQIIERSGEQLLLLINDILHL 1697

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
            S+IE+G+ EL  +  +  D V+  + + ++ A+ KNI+   +    L   V  DEK +RQ
Sbjct: 1698 SKIESGKLELENNDFNFADFVKNVVSITRVWAENKNIDYRFESPAQLPYFVNGDEKRIRQ 1757

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSF 424
            ++ NLLSNA+KFT  GG V   +  T              ++D G GI +  I  +   F
Sbjct: 1758 ILFNLLSNAIKFTDEGG-VTFRITHTPHPTKVLNHIFVFEVEDTGTGIPKDTIAKIFEPF 1816

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             Q   +   A +G GLGL I   ++    G   + S L +G      +      + +P+ 
Sbjct: 1817 HQVRGSRHQA-EGTGLGLAICNRLVKLMDGSIQVESTLGKGSLFKLTIDMPVTNSELPQP 1875

Query: 485  NHESTQYKCY 494
              E      Y
Sbjct: 1876 PQEERNIVGY 1885


>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
 gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
          Length = 863

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 10/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + N ++       + ++           E ++ A   N AKS FLA+MSHE+RTPLN I
Sbjct: 330 IQGNDELAEFTETLNRVMERNYQHNKELVEAKEDAISANKAKSAFLANMSHEIRTPLNGI 389

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E++    +    +   +E +GDI  S   LL L+N+ILDLS+IE+G   LS     
Sbjct: 390 IGMAEILSQSQL----SANQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 445

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L + V + + ++  +A  K+IE+   ID  +   ++ DE  +RQV+ NLLSNA+KFT+  
Sbjct: 446 LREAVYDSVSVILSKAISKDIELDINIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFTSK- 504

Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G +   + +T           S+ D G GI   ++ ++   F Q   +I     G GLGL
Sbjct: 505 GTITTDIAYTPMSLGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 564

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I + ++   GG    RS   EG      L
Sbjct: 565 AICRQLVDLMGGYITARSVKGEGSTFTFCL 594


>gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
 gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
          Length = 394

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 13/262 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              ++ ++A E + AK+RFL +MSH++RTP+NAI+GFS+++        N E  +EY+G 
Sbjct: 2   ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL---DNEEKVREYLGK 58

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SG  L+ +I+++L+++RIE+G   L   A +L ++      +L+   Q K I     
Sbjct: 59  IKSSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSID 118

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI-KDNG 409
            +      + D+  ++++ LN++SNA+K+T  G  +HVT+  T     + +Y+ + +D G
Sbjct: 119 TNVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTG 178

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+A   +P +   F +   A ++   G GLGL I +S +    G+  + SK  +G +  
Sbjct: 179 IGMASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFT 238

Query: 470 AILPNTRVLN------FIPEDN 485
             +P             +PE  
Sbjct: 239 VEIPLELASEGDICKKELPEQT 260


>gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1611

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 10/261 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + +  +    + ++ A   NL+KS FLA+MSHELRTPLNAILGF++++         +
Sbjct: 1134 ITQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGR---DTSLS 1190

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++E +  I+RSG+HLL LI++ILDLS+IE G+  L  +   L  ++     ML  +A+
Sbjct: 1191 AYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAE 1250

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K I++  + D +L   +  D K +RQ+++NLL+NA+KFT   G V + V  +       
Sbjct: 1251 SKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQ-GTVTLRVNLSKIDQKAV 1309

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 ++D G GIA  E+  +   F Q   A K   QG GLGL I+Q ++   GG+  + 
Sbjct: 1310 IVKFIVEDTGVGIAADELDNLFQLFVQAE-AGKKINQGSGLGLAISQKLVQLMGGKIEVN 1368

Query: 460  SKLREGVEVIAILPNTRVLNF 480
            S L +G      +P    L+ 
Sbjct: 1369 SILNQGSIFSFEIPVELSLSS 1389


>gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
 gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
          Length = 534

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++  E     + 
Sbjct: 290 IDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASMLVEE----DDK 345

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + YI  +  + + LL LI++ILDLS+IEAG  + +   +++ D   + +   +++  
Sbjct: 346 KERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRGYEIKED 405

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +    +     P    ++ D+K + QV+ N ++NA+KFT+  G++ +   +         
Sbjct: 406 KPVPVLLASNLPDY-RIYTDKKRLMQVVTNFINNALKFTSE-GQITLEYHFKEDTNEIEF 463

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   +  V   F +      +  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 464 SVTDTGIGIAPDAVGQVFDRFVKL----NTFSKGTGLGLSICRSIIEHLGGTIGLESEVG 519

Query: 464 EGVEVIAILPNTR 476
            G       P   
Sbjct: 520 VGSRFWFTHPCAE 532


>gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 385

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/250 (35%), Positives = 126/250 (50%), Gaps = 2/250 (0%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A       R+ AE  + AKS FLA MSHELR+PLNAI+GF+E+I    +GP  +  Y EY
Sbjct: 133 ADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLGP-TDPRYFEY 191

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
             DI  SG HLL LI++ILDLS+I AG+  L E  + + ++ R    +         +E+
Sbjct: 192 AEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAANLSTAQLEL 251

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              +      + AD   + Q+I+NL++NA+KFT  GG + V    T+     I + D G 
Sbjct: 252 VNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTD-AVLIKVSDTGI 310

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+   E+      F Q       +  G GLGL I + + + HGG   I S    G  V  
Sbjct: 311 GMTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVKGTGTTVTI 370

Query: 471 ILPNTRVLNF 480
            LP  R+   
Sbjct: 371 HLPRARIATE 380


>gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1851

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 169/417 (40%), Gaps = 35/417 (8%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +    +  IG V   +  +LV  +  G       L E        L +     LL  + +
Sbjct: 1187 RFKAGETLIGTVAEEKRPILVENVPPGYLKIASGLGEAAPAHVIVLPVLFEGQLLGVIEL 1246

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLF 208
            ++   F      FL+    ++  S   I      ++ L     +          +     
Sbjct: 1247 ASFQPFAQIQKDFLNQIAEMIGTSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQK 1306

Query: 209  KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
                     + + + L  +    EV  +  +E R+  EE           KS FLA+MSH
Sbjct: 1307 ALQASNAELEEKSERLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSH 1366

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+
Sbjct: 1367 ELRTPLNSLLILAKLLADNADGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGK 1425

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLS
Sbjct: 1426 MDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLS 1485

Query: 378  NAVKFTAIGG-RVHVT-------------------VGWTSGRGQYISIKDNGPGIAEGEI 417
            NAVKFT  G   + +                    +          S+ D G GIA  ++
Sbjct: 1486 NAVKFTDSGAVELVIRPAGADVPHAIREQLLEHGALRDADADMIAFSVTDTGIGIAASKM 1545

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1546 RVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1602


>gi|332535478|ref|ZP_08411259.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035088|gb|EGI71603.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 925

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 13/300 (4%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           LDI L  +          +   + +++         ++ L AE++      ++   +AE 
Sbjct: 214 LDIGLGVVAKNINLLLQKVQTAMSENDAAQKELYKLQNGLEAEVQNRTIALEQATIKAER 273

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K+ FLA+MSHE+RTP+N ++G  +++    +    +         I  S   LL++
Sbjct: 274 ASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTEL----DGAQHRLSTIIRESAFSLLSI 329

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           +++ILD S+IEAG+  +     S+ D + E   +L   A+++ +++   I P +   +  
Sbjct: 330 LDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELAIAPDIPINLTG 389

Query: 364 DEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
           D   +RQV+ NL SNA+KFT+      G V ++V               + DNG G+++ 
Sbjct: 390 DSVRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVVHNTTDHFTLRFCVTDNGKGMSQA 449

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +   F Q   +I     G GLGL I +S+     G   + S    G E    LP +
Sbjct: 450 QLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVTSHTGIGSEFTVELPFS 509


>gi|323694471|ref|ZP_08108641.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501459|gb|EGB17351.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 854

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   L      ++   A      +      +  ++ R+ A E N AKS FLA+MSH++R
Sbjct: 300 RMFMTLLSCASVLIILTAIFLRYFSITRSQMNELEKARQAALEANKAKSEFLANMSHDIR 359

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI+G + +         + +  +  +  I  S +HLL LIN++LD+S+IE+G+  L
Sbjct: 360 TPMNAIVGMTAIATAHI---DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTL 416

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
           +   ISL ++V   + ++Q + + K       ++   +  VW D   + QV+LNLLSNA 
Sbjct: 417 TTEQISLKEVVEGIVNIMQPQVKTKKQTFDIHVENIFTENVWCDGIRLNQVLLNLLSNAT 476

Query: 381 KFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           K+T  GG + +++              +I+++DNG G++   +  +  S+ +        
Sbjct: 477 KYTPEGGSIQLSLSEEKSPKGENYVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHK 536

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +G GLG+ I + I+    G   I+S+  +G E +   
Sbjct: 537 TEGAGLGMAITKYIVDAMEGTIEIQSEPDKGSEFLLTF 574


>gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 2099

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 197/490 (40%), Gaps = 29/490 (5%)

Query: 14   LLISPTGDHLGLEYPSKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNP 70
              +  T +    +   K +  R    L  +   +L     +  L  L+ A+ G  +  + 
Sbjct: 1179 DNLRLTTERNTEQDWLKTNLARFTNMLQGQRDLTLVGKMLLSELAPLVGAHQGVIYQVDA 1238

Query: 71   --IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
                P  SL+++       +   ++      +G+       +LV  +   +      +  
Sbjct: 1239 DESQPFLSLLSVYAQGVEAAHPPRLDFGQGLVGQCASDARRILVTDLPENVVPISSGVFT 1298

Query: 129  PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                +   L ++    +   + +++   F      FL      + +   +I +    +  
Sbjct: 1299 TLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLDQLTTSIGIVLNSIEATMQTEGL 1358

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244
            L      A +        L ++N ++     + ++   E+E      ++ R+  EE    
Sbjct: 1359 LKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNVEVEAKNQEIEQARRALEEKATE 1417

Query: 245  ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  KS FLA+MSHELRTPLN+IL   + +     G L+     E+   IH +G  L
Sbjct: 1418 LALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLS-AKQVEFAKTIHGAGTDL 1476

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
            LNLI++ILDLS+IE+G   +    I + +++       +  A+ +N+    ++   ++  
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRNLSFAVEVGADVTKS 1536

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407
            +  D K ++Q++ NLLSNA KFTA GG V + V   +                    + D
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASVTSGWSPEHPSLRHAPSVIAFEVVD 1595

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GI   +   +  +F Q   +      G GLGL I++ +    GG+  +RS    G  
Sbjct: 1596 TGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSAPGVGST 1655

Query: 468  VIAILPNTRV 477
             +  LP T V
Sbjct: 1656 FVLYLPLTYV 1665


>gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 623

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 23/346 (6%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---- 206
           +   S   L   V      +    +   I+    +   L  ++                 
Sbjct: 276 VHFYSTAELQEMVLRQTISLFEFSTILLIILFLFVSYLLFIVIIRPCYLLVDYVRRCGEG 335

Query: 207 -----------LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                         S V+I +   E + L+A  +      +   K+A   N AK+ FLA 
Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQSQELEYAWKKALVANQAKTHFLAK 395

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TPLNAI G+ ++++L      +N      I  I  S   LL  ++E+LD S IE
Sbjct: 396 VSHELKTPLNAIKGYIQLLKLSI----DNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIE 451

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374
            G+ +L    I L         +  +   +K+++    ID  + SV + DE  ++Q+I+N
Sbjct: 452 DGKVKLEIDTIDLFQTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIIN 511

Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L+SNA+KFT  G   V   + + +    Y  I +KD G GIAE ++ ++  SF Q + +I
Sbjct: 512 LMSNALKFTEHGKIEVSFDLDYQTETEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSI 571

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
                G GLGL I++ +    GG  ++ S++  G      LP +++
Sbjct: 572 SRQFGGTGLGLSISKRLAEVMGGNLIVESQVNVGSTFTLFLPLSKI 617


>gi|124266342|ref|YP_001020346.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124259117|gb|ABM94111.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 609

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/434 (21%), Positives = 174/434 (40%), Gaps = 13/434 (2%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG--EVYVWRIWL 110
            L  +++  I      +     W ++   V+   L   ++  ++       +   W+   
Sbjct: 44  LLGAMVLTMIYWPVAPSRELIAWCVLFGLVWVLRLVTLRRYAHAGWAAASSQAARWQRLW 103

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
             G +A G CW L   +        + T          +    L       A F      
Sbjct: 104 NAGAMASGACWGLAAWMFYEHGRAFHQTTLLLIIYSFCVGSITLMA-SQHRAFFAFISLC 162

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            V    +        ++ LAG+L+      T +     ++  + +  +   + L  +L+ 
Sbjct: 163 FVPTILRIATLGSTDNLLLAGVLSLVFLMTTILGRAYRRTFDRAIELKVRTEMLAVQLQT 222

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            K+ +DE ++ AE  N AK++F A+ SH+LR PL+A+  F+E +  ++ G   +E     
Sbjct: 223 EKAAADEAKRAAETANRAKTQFFAAASHDLRQPLHAMGLFAEALRSKSRG---DEEVTHL 279

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+ S   L  L  E+LD+++I+ G  E      +L ++ +   +  +  A EK + +
Sbjct: 280 VNSINSSVDALEGLFGELLDITKIDTGGVEPQPRHFALRELFQRLKLQYEPTAFEKGLSL 339

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +    +  V+ D   + +++ NLLSNA+++T  GG V V+     G    + + D G 
Sbjct: 340 RFRGAHHV--VYGDPVLVDRIVRNLLSNAIRYTVDGG-VLVSARRR-GDEVLLQVWDTGV 395

Query: 411 GIAEGEIPTVLTSFGQGSIAIK---SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           GIA  E   V   F Q            +G+GLGL I Q +    G    + S    G  
Sbjct: 396 GIAPTEQQRVFDEFYQVQANAPLGLHQPKGLGLGLSIVQRLARLMGAPLHLASVPGRGSV 455

Query: 468 VIAILPNTRVLNFI 481
               +P  +V    
Sbjct: 456 FTLTVPPGKVQRSQ 469


>gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 494

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/412 (26%), Positives = 187/412 (45%), Gaps = 18/412 (4%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
               +    +      L              +         + + ++     +++++ + 
Sbjct: 61  SRLTLARAHLDAAMRRLRGQSRVAPAPLPAESFAALHESVGDVVLLHDRTGAVLSIAGNR 120

Query: 154 LSNFMLPYAVFLS---FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S F LP A  +    F  V VA     + ++     S A +        + +    +  
Sbjct: 121 QSLFGLPAADLMGRGFFEHVHVADRPIFLKAIGEASFSDAPITVALRLRASSLDRGDYAE 180

Query: 211 NVKI-LSCQAEKDDLIAELEVAKSL----------SDETRKRAEEENLAKSRFLASMSHE 259
            V + L  +A +    +    A ++           DE        +L+K  FLA++SHE
Sbjct: 181 PVFLWLDMRARRCGKHSPERSAVAIFRNVTDAHWRQDELDSAGTAADLSKDHFLANVSHE 240

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFSE++      P +    +EY   IHRSGQHLL+++N ILDLS+I +G +
Sbjct: 241 LRTPLNAIIGFSEILGDADQAPRDPAKQREYAAIIHRSGQHLLSVVNSILDLSKIHSGSF 300

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           +LS S   +  +V  C  M++L AQ+++IE+ +     L  +  D++  +Q+++NLLSNA
Sbjct: 301 DLSPSHFGVAPLVEVCCDMVKLEAQDRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNA 360

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G V ++V         I++ D+G GI E ++  +   F Q   A+    +G G
Sbjct: 361 VKFTPAHGEVSISVSI-EDETLLIAVADSGVGINEQDLARLGNPFFQARGALDRPFEGTG 419

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHES 488
           LGL I   ++  HGG   + S+  +G  V+  LP      V    P    E+
Sbjct: 420 LGLSIVSGLVGLHGGSIAVASEPDQGTCVLVRLPVDCRAAVDKARPSAEIET 471


>gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
 gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365]
 gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
          Length = 1035

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG ++L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 537

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/410 (27%), Positives = 180/410 (43%), Gaps = 4/410 (0%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
           +  + I   + +        +L     + +S   + E   WRI L++    +        
Sbjct: 122 WFGDSIAVNFPVHYRHAVGRDLVGMVSLTSSSAVLAERLQWRIILIIVAAVLKTAI---- 177

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L          +       L  A+  +             +             ++ + L
Sbjct: 178 LWVIFDRLGRSILARPLTQLTRAVREAGWGRLHPVEFDAPTAISAAGTEIEHLRIAYNDL 237

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
             +L+       +    +   +     ++     E    +A ++ A+  +      AE  
Sbjct: 238 VAALSRGQREIATLNRDLETRVAARTSELQERTVELSAALARVDQARRQTAAALDAAERA 297

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
             AKS FLA +SHELRTPLN+ILGFSE++  + +   + E   EY  DIH SG HLL LI
Sbjct: 298 GRAKSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHLLTLI 357

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILDLS+IEAG+ E+    +    I R  + +++ +A  KN+ I  ++DPS+  + AD 
Sbjct: 358 NDILDLSKIEAGQMEIHSEWVDPAAITRAVVELMREQATRKNLTIECRLDPSIGPLRADP 417

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           +  RQ+++NLLSNAVKFT   G V +    T   G  I++ D G G+   ++   L  FG
Sbjct: 418 RRFRQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARALEPFG 477

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           Q    I  ++QG GLGLP+   +   HGG+  + S    G       P  
Sbjct: 478 QIDSPITRSQQGTGLGLPLVSQMARLHGGRLSMDSSPGVGTRATLWFPPE 527


>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1364

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   GG+  + S    G E   ++   +  +  P+   E
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SSPPQAQRE 881


>gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 499

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI+++LDLS+IE+   + + +  SL  ++ +     Q    
Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKE-QTMKP 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H    V        +
Sbjct: 367 ISEIEIRASLPNEDVYINTDATRLKQVISNFINNARKFTEK-GYIHFGYAVDSVDASSVH 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S+ 
Sbjct: 426 VFVEDTGSGIPKECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDIFVESET 481

Query: 463 REGVEVIAILPNTR 476
            +G      LP  R
Sbjct: 482 GKGSRFTVTLPFER 495


>gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 611

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        +      ++       + ++
Sbjct: 371 EKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ +   I ++  +   I   ++  +E+++E  + +      V 
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRNLYVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV+ N++SNA+K++  GG V  ++         YIS+KD G GI + ++  V 
Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  HGG     S   +G  +   LP
Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWADSIEGKGTTITFTLP 599


>gi|313623104|gb|EFR93377.1| sensor histidine kinase ResE [Listeria innocua FSL J1-023]
          Length = 596

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++R+ I    + A+E  +E+  +++        D   M QV++NL+ NA++ T     
Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  H G+  + S L +G + I  LP  +
Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596


>gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 556

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 4/355 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            +  LV                   +  + SAL++ +      LS   +  +L   ++  
Sbjct: 45  GVGGLVSLIGDDSPIGLPLTEVIPELFGNESALADILNGQLDRLSLPLINRSLPDGSVRY 104

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           + +L +       T +     +     +S  + L  Q   +  + +  + +   +  R  
Sbjct: 105 LDLLTVPHTDDDGTIVGLLQIVVDTTNRSMTEQLLTQRRNELHLLKDRIQRQNVELARIN 164

Query: 242 A--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           A        K  FLASMSHE+RTPL AILG  +V+  + +GPL+ E     I  I + GQ
Sbjct: 165 AGLLRVTKLKDEFLASMSHEVRTPLTAILGLVDVLRAQLVGPLS-EEQMGAINGIKQGGQ 223

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN+ LD+++IEAGR EL  + +S+ DI +    M+   A+   +++   +DP++ 
Sbjct: 224 HLLALINDYLDIAKIEAGRLELDLTPVSVHDICQSLRPMIADMAKRAGLQLVYDLDPTVQ 283

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIP 418
            + AD + +RQ+++NLLSNA+KFT  GG+V + V   +       ++ D G GI+  +  
Sbjct: 284 VMLADARRLRQILINLLSNAIKFTPAGGKVGLEVRGDAERGAVRFTVWDTGIGISAEDAA 343

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F Q     +    G GLGL +   +   HGG   + S++  G      LP
Sbjct: 344 RLFEPFQQIESERQKEVTGSGLGLALVAKLARLHGGSVSLESEVGVGSRFHVTLP 398


>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 2654

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 10/313 (3%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
              S   +    +           I            + +   H+ +      +       
Sbjct: 1756 LASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHAMGHVERDEQGKATDMYGITM 1815

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             I   ++A     + ++ A+  N AKS FLA+MSHE+RTP+NAI+G S +     +    
Sbjct: 1816 DITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDL---- 1871

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            N   + YI  + RS + LL +IN+ILD S+IEAG+  +      L D++     ++ L+A
Sbjct: 1872 NGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKA 1931

Query: 344  QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
            +EK +E+   + P L + +  D   + QV++NL +NAVKFT   G V V V         
Sbjct: 1932 EEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFT-AHGDVVVKVQQLERTTER 1990

Query: 400  -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               Y S+KD+G G+   +   +  SF Q   +      G GLGL I++ ++    G+  +
Sbjct: 1991 IKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDV 2050

Query: 459  RSKLREGVEVIAI 471
             S   +G +    
Sbjct: 2051 DSVPEQGSDFHFS 2063


>gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 505

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 2/275 (0%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              +    + +     +       D I E ++A+   +E  +  E  +  K +FL +++H
Sbjct: 232 RLIFWHDVVLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELELLDNIKDQFLTNLTH 291

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL +I GF+E++  + MGP+ N+  K  I  + R+ + L +L+  +L +S      
Sbjct: 292 ELRTPLISIKGFTELMLEDHMGPI-NDAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKN 350

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            + +   +SL  I  E +        +K + I + I   L ++  D+  ++++I +LL N
Sbjct: 351 IKYNMDVLSLTKITEEILETFTAPILKKGLTIERNIQTDLPTILGDKDHLKRMINHLLDN 410

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG++ ++          I+I+D G GI E  +P + + F Q   + +    G 
Sbjct: 411 AIKFTPEGGKIGISA-LHDSESVIINIEDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGT 469

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G+GL I + I+  H G   + SK+ EG  +   LP
Sbjct: 470 GVGLHICKKIIEAHKGSLSVSSKIGEGTIISVKLP 504


>gi|16801127|ref|NP_471395.1| hypothetical protein lin2061 [Listeria innocua Clip11262]
 gi|16414562|emb|CAC97291.1| resE [Listeria innocua Clip11262]
          Length = 596

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++R+ I    + A+E  +E+  +++        D   M QV++NL+ NA++ T     
Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  H G+  + S L +G + I  LP  +
Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596


>gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 1004

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS FL+ MSHE+RTPLNAI+G+ E+         + E   +Y+     +   LL++I
Sbjct: 626 SETKSSFLSRMSHEMRTPLNAIIGYLEL---GKKNADDTEKLWDYMAKSDIAAHQLLSII 682

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWAD 364
           N++LD++ IE+G+  L +    L + + E   M + +A  K ++    +D      +  D
Sbjct: 683 NDVLDMASIESGKLHLEKVQFELTEEINEIREMFESQAWHKKLDFQVLMDSSEKIYIMGD 742

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQY--ISIKDNGPGIAEGEIPTV 420
              + Q+++NLLSNAVKFT  GG+V ++V  T+      Y    + D G G++E  + ++
Sbjct: 743 PLRLNQILINLLSNAVKFTPAGGKVTLSVKKTALQEGHVYYCFEVTDTGIGMSEEYLDSL 802

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--L 478
              F Q   +I     G GLG+ I ++++    G   ++S   EG      LP   +  +
Sbjct: 803 FDPFVQQDASIARKYGGSGLGMSITKNLVTMKQGTISVKSTPGEGTVFTVNLPFQLIQQV 862

Query: 479 NFIPEDNHEST 489
             IPE    +T
Sbjct: 863 EDIPEKESWNT 873


>gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 616

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 8/309 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +  + +     +   +A ++A      + + Y   + ++       E+           +
Sbjct: 169 IEFRYLRPDGRICWVIAQVVAETDPSGSLLGYVGTQVDITRRMVVEERL------RQQSA 222

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           L +E      +    K +FLA+MSHELRTPL  I+GFSE +     G L +   +  +  
Sbjct: 223 LLEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQR-AVQH 281

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  +GQHLL LIN+ILDL+RI AG  +L    + + D   E I +L    Q K  +    
Sbjct: 282 VFDNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYT 341

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412
              +  S+ AD   +RQ+++NLLSNA KFT  GG + + + + +  +     I D+G GI
Sbjct: 342 ACEAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGI 401

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A  +   +   F Q    +   + G GLGL + + ++  HGG+  + S++ EG      L
Sbjct: 402 AANQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFL 461

Query: 473 PNTRVLNFI 481
           P    L  +
Sbjct: 462 PQHSPLPIL 470


>gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
 gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
          Length = 1586

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    +    AE+   AKS FLA+ SHE+RTPLNAILG + ++  E++     E+    +
Sbjct: 825  EQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG+ LL ++N++LDLS+IEA    L    + L + + E   +   +A+ KN++  
Sbjct: 881  DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFK 940

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402
             ++   L   V AD   +RQ++ NLLSNA+KFT++ G + +                   
Sbjct: 941  LEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRAEIIDKFIWKGAEKNIVR 999

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             SI D G GI+E     +   F Q   +      G GLGL I   +     G+  + S+ 
Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGKIGVESRE 1059

Query: 463  REGVEVIAILPNTRVLNF 480
             +G      +P   + + 
Sbjct: 1060 GQGSTFWTEMPLQTLSDE 1077


>gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 389

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 11/253 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE   AKS FLA++SHELRTPLN ++G SE+++   +    N     Y   I      LL
Sbjct: 31  EEAARAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQTGYADSIRVCADTLL 86

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  + E  ISL + + E +  L     E+ ++  ++++ +    V
Sbjct: 87  SIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEMLV 146

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEI 417
            AD   + Q+++NLLSN+ KFT   G V V          ++    S+ D G GI + + 
Sbjct: 147 MADPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQK 205

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTR 476
             +   F Q   +   +  G GLGL I ++++ N   G   + S+  +G  V   L   +
Sbjct: 206 QKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSLRFKK 265

Query: 477 VLNFIPEDNHEST 489
           V         + T
Sbjct: 266 VPKAQAGAQQQRT 278


>gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
 gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
          Length = 821

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 144/275 (52%), Gaps = 10/275 (3%)

Query: 221 KDDLIAELEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +D  I + +  +   +  E  + A++   AKS F +SMSH++RTPLNAI+GFS++ +  +
Sbjct: 416 RDVDIEKRQQLQHTIILQEALEAAKKSTKAKSDFFSSMSHDMRTPLNAIIGFSQLAQKNS 475

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               ++   ++Y+  I  SG+ LL LIN+IL+LS++EAG+  L+    +L   V E   +
Sbjct: 476 ---DDSGKVRDYMQKIEFSGKQLLALINDILELSKMEAGKNALNNQRFNLKKYVEEAADI 532

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395
            + +A+ +       +D     V  DE  + Q++ NLLSN++K++  G  +H+ +     
Sbjct: 533 FREQAEHQGKRFTADLDMHNEIVVGDEFKIGQILNNLLSNSLKYSNPGAEIHLEIRQFDF 592

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I ++D G G++   +  +   + + +    +A  G GLG+PI +S++    G+
Sbjct: 593 RRHSKYQIVVEDTGIGMSRQFLEHLFDPYSRETCFTSAATVGTGLGMPIVKSLVQQMSGE 652

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             + S L +G +    LP   V   I ED+ E  +
Sbjct: 653 ISVESTLGKGSKFTVTLPLEAV--HIEEDSQEKKE 685


>gi|148284508|ref|YP_001248598.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong]
 gi|146739947|emb|CAM79973.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong]
          Length = 515

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 15/311 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             ++F  +    + Q +   ++    L  +L  +L FF  I   +               
Sbjct: 216 AVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIKSSISNVQ----------- 264

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I     A    ++ R++AE+EN+AK++FLA++SHELRTPL+AI+G +E+I   +   +
Sbjct: 265 KIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIILSNSHCKI 324

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N   Y  YI DIH SG+HLL +IN+ILD S+  A +  +   A+ L  +    + ++  +
Sbjct: 325 N---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASSLRLMYTK 381

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401
           A++  I++  K  P    + AD K ++Q + NLLSN++KFT   G + + +         
Sbjct: 382 AKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISMNELKSLV 441

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           YI + D G GIAE +IP  L+SF Q +  + +  +G GLGLP+ + ++    G F I S 
Sbjct: 442 YIKVIDTGIGIAEQDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEGDFEITSN 501

Query: 462 LREGVEVIAIL 472
           + +G  V    
Sbjct: 502 IGQGTTVTITF 512


>gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 576

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 LIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569


>gi|323485480|ref|ZP_08090826.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323401128|gb|EGA93480.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 854

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   L      ++   A      +      +  ++ R+ A E N AKS FLA+MSH++R
Sbjct: 300 RMFMTLLSCASVLIILTAIFLRYFSITRSQMNELEKARQAALEANKAKSEFLANMSHDIR 359

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+NAI+G + +         + +  +  +  I  S +HLL LIN++LD+S+IE+G+  L
Sbjct: 360 TPMNAIVGMTAIATAHI---DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTL 416

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
           +   ISL ++V   + ++Q + + K       ++   +  VW D   + QV+LNLLSNA 
Sbjct: 417 TTEQISLKEVVEGIVNIMQPQVKTKKQTFDIHVENIFTENVWCDGIRLNQVLLNLLSNAT 476

Query: 381 KFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           K+T  GG + +++              +I+++DNG G++   +  +  S+ +        
Sbjct: 477 KYTPEGGSIQLSLSEEKSPKGENYVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHK 536

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +G GLG+ I + I+    G   I+S+  +G E +   
Sbjct: 537 TEGAGLGMAITKYIVDAMEGTIEIQSEPDKGSEFLLTF 574


>gi|313618121|gb|EFR90221.1| sensor histidine kinase ResE [Listeria innocua FSL S4-378]
          Length = 596

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++R+ I    + A+E  +E+  +++        D   M QV++NL+ NA++ T     
Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I ++I+  H G+  + S L +G + I  LP  +
Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596


>gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
 gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
          Length = 976

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/322 (29%), Positives = 157/322 (48%), Gaps = 20/322 (6%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            ++ Q ++S    ++++  M+      F  I   +F   V ++   A     I  + +  
Sbjct: 524 TIANQNMISSGTGEMTIIEMIYANPLMFVVICGVVFLLIVILILVMARYR--IHAVRMQN 581

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           SL+     +AE+EN AK  FL+ MSHE+RTP+NAI+G S++     M     ET +  + 
Sbjct: 582 SLA-----KAEKENRAKGEFLSRMSHEIRTPMNAIVGLSDL---TCMMDDVPETVRVNLS 633

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  S ++LL LI++ILD+SRIE     +     S+  ++ E   M+   A  + +E   
Sbjct: 634 KIRSSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNELESMMTAEAGRRELEFKL 693

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDN 408
            +      +  D   ++QV++NL+SNA KFT+ GGR+ V V  T            + DN
Sbjct: 694 DLRIKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTETEASAEEAVFCFRVADN 753

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +   +  SF Q         QG GLGL I+++I+   GG+  ++S++ +G E 
Sbjct: 754 GIGISEKDQERIFESFEQVGTNYS-KSQGTGLGLAISKNIVELMGGKLELKSEIGKGSEF 812

Query: 469 IAI--LP---NTRVLNFIPEDN 485
                 P   +  V +  P  +
Sbjct: 813 YFTAAFPTAASEEVHDESPAVD 834


>gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 586

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 6/236 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     KS F A++SHELRTPL  I GF E ++      L+ +  K  +  I    +
Sbjct: 357 RKLEAL---KSEFAANVSHELRTPLTLISGFVETLQS--WESLDEKDRKMALNIIELETE 411

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE  +       + +  ++ E   M+   A +KNI++   I+ ++ 
Sbjct: 412 RLKRLINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVH 471

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +++ +    +Q+++NL+ NA+K+T  GG++ V+          I + DNG GI + +   
Sbjct: 472 TLFGNSDWFKQMLVNLIENAIKYTPTGGQIKVSAK-NEQNEISIMVMDNGIGIPKEDCER 530

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + I+   GG   + SKL +G      LP+ 
Sbjct: 531 IFERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLPSK 586


>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 935

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 24/313 (7%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
               + I+LA +   ++  F  +      +   +L    E                + + 
Sbjct: 247 RYQAIQIALAVVTVLSVLTFAVMVAKQILAGSALLQAMVED-------------LRQAKT 293

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A+  N AKS FLA+MSHE+RTP+N I+G + ++    +          +   +  S + 
Sbjct: 294 GADAANQAKSEFLATMSHEIRTPMNGIIGMTSLLLDTRL----ERDQAHFANTVRVSAES 349

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL +IN+ILD S++EAG+ E  E++  L+ ++   + +L  R ++KN+++   I P+   
Sbjct: 350 LLTIINDILDFSKMEAGKLEFEETSFELVPLIEGVVDILGPRLRDKNLDLSCFIPPAAHG 409

Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415
           V   D   +RQV+LNL  NAVKFT  GG V + V              +I D G GI E 
Sbjct: 410 VFRGDAGRLRQVLLNLAGNAVKFTNQGG-VVLEVMVDDSDPARALLRFTITDTGIGIPEA 468

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +  +F Q   +      G GLGL I + I+   GG     S   +G      +P  
Sbjct: 469 AKGKLFGTFTQAEASTARRFGGSGLGLAICKRIVTMMGGDIGFDSSEGKGSTFWFQVPLP 528

Query: 476 RVLNFIPEDNHES 488
           R  + IP D   S
Sbjct: 529 RT-DEIPADPAPS 540


>gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463]
          Length = 619

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +  E     + E   +++    +    ++ +IN+
Sbjct: 377 SQRQFISNVSHELRTPLTSLQAYIEALNEEAW--KDPEIAPKFLEVAQQETSRMIRMIND 434

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +          +K   I +++      
Sbjct: 435 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 494

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  +      +SI D G GI   ++  +
Sbjct: 495 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 553

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 554 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYETMTEE 613


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 767

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E +++AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   + E  K
Sbjct: 530 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EYI  I  + + LL LIN+ILDLS+IE+G  E  +   +L  +  E  + +Q +    N+
Sbjct: 586 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E+      S   V  D   ++QV +N L+NAVK T   G + +  G        I ++D 
Sbjct: 646 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIERKG-LRIYVEDT 703

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +     V T F +         QG GLGL I+++I+   GG+    SKL  G   
Sbjct: 704 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 759

Query: 469 IAILPNTR 476
            A LP   
Sbjct: 760 WAWLPLRP 767


>gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CMR15]
          Length = 676

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 185/499 (37%), Gaps = 40/499 (8%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           I P+   + +       F   ++      +     ++   V + A  G ++         
Sbjct: 38  IRPSAWLVAIGAAVAGTF-ARLMLESAAGIRLPFYLVFPVVTVAAWYGGFWPGVVAVA-- 94

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
               L      L +        +    V +    LL+  +   L               +
Sbjct: 95  CYAALFAGLVALQISPPPAQPILPTQLVVLALGTLLICVLCEQLRRARAGAERRARAETQ 154

Query: 136 YLTIYKSATLLIALSISAL-----------SNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
                +     +  S  +L            +  +            V        +  +
Sbjct: 155 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLPPHELLGRTVREVFGRRAASRL 214

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVK----ILSCQAEKDDLI---------AELEVA 231
            +     +     +   +    L    V     ++  + +  ++I          E   A
Sbjct: 215 TEAGQRVIATGLPTRVEFAFRRLHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQA 274

Query: 232 KS-------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++    M P + 
Sbjct: 275 EARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MRPYDE 331

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++      ++  A+
Sbjct: 332 AMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAR 391

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I +  +  P +  +  D   ++QV  NLL+NAVKFT  GG V +TV   +      +
Sbjct: 392 QKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVA-T 449

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           ++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G+    S    
Sbjct: 450 VRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGAD 509

Query: 464 EGVEVIAILPNTRVLNFIP 482
            G  +   LP     +  P
Sbjct: 510 LGTTMAVTLPLHAPPSNEP 528


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 30/291 (10%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEEENLAKSRF 252
             L F++  T       V     +     + +ELE  K+  D    R  A     AKS F
Sbjct: 619 GILCFWSQQTKTEPFKAVDRELLKLMAQWIGSELERQKTAQDLAKVRDEALAATKAKSEF 678

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTP+NA++G + ++    +      T ++Y+  I  S   LL+LIN+ILD S
Sbjct: 679 LATMSHEIRTPMNAVIGMTGLLLDTRLTS----TQQDYVETIRSSSDALLSLINDILDFS 734

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           +IE+G+ EL +    L   + E + +L  +A  KNIE+   IDP     V  D   +RQ+
Sbjct: 735 KIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSKVIGDGARLRQI 794

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----------------------ISIKDNG 409
           ++NLLSNAVKFT   G V +++   S                            +++D G
Sbjct: 795 LVNLLSNAVKFTET-GEVVISLKAVSLEPIVSEENLDENSTETTTQPNRYQIQFAVRDTG 853

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            GI    +  +  SF Q   +      G GLGL I++ +    GGQ  + S
Sbjct: 854 IGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVES 904


>gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 982

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             R +AEE +  KS FLA+MSHE+RTPLN+I+GFS+++  E + P   E  +E+   I  
Sbjct: 752 RARLKAEESDQLKSAFLANMSHEIRTPLNSIVGFSDILVTEDLSP---EDKREFGKIIRS 808

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + + LL LIN+ILDLS++E+G  E +E+   + +++ E     Q R +E   ++      
Sbjct: 809 NNEQLLTLINDILDLSKLESGCVEFTETDFGVEELLGEIFSSYQPRFRELPTKLVYVPKG 868

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               +  D + + +V+ N ++NA+K+T+  G + +       +G   ++ D G G+    
Sbjct: 869 KSIRLHQDRQRLIEVLTNFVNNAIKYTSE-GSITLDYEKV-DQGVKFTVTDTGVGMPPEA 926

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +   F +      S  +G GLGL I + +     G+  + S L +G      L
Sbjct: 927 LDKIFNRFEKLG----SMVKGTGLGLSICKMLADRMHGKIGVDSTLGKGSTFWFWL 978


>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1242

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 148/333 (44%), Gaps = 8/333 (2%)

Query: 144  TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             +L  + +  +    L   +  +     V +   +  +     +    M A       + 
Sbjct: 767  LVLSDIMMPGIDGLQLLRELRSASSTREVPIILLSARAGEESRVEGLEMGADDYLIKPFS 826

Query: 204  TYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
               L       L   +  KD L  + E  +  +   R  AE  N  K  FL  +SHE+RT
Sbjct: 827  ARELLARVRTNLELSRLRKDALAQQAERIREQA--ARVEAEAANRMKDEFLQVLSHEIRT 884

Query: 263  PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
            PLN +LG+ +++     G L++      +  I R+      L++++LD+S I  G+  L 
Sbjct: 885  PLNGMLGWVKMLRQ---GKLDSSATTRALETIERNANAQAKLVDDLLDVSCIIRGQLRLE 941

Query: 323  ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
            +  +SLI ++ E I  L+ +A+ K+I I   +D  +SSV  D   ++QV  NLLSNA+KF
Sbjct: 942  KRPVSLISVITEAIETLKPQAEAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKF 1001

Query: 383  TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            T  GG+V V++         + +KD G GI    +P +   F Q   +      G+GLGL
Sbjct: 1002 TPSGGQVEVSLQAVGTD-ALLQVKDTGNGIKADFLPYIFERFRQADASTTRTYGGLGLGL 1060

Query: 443  PIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
             I + ++  HGG     S  L  G      LP 
Sbjct: 1061 AIVRHLVEMHGGTVEADSPGLGLGATFGVRLPL 1093



 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 7/270 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTP 263
            +   +      E       + +  + + +E RK+A+   E +  K+ F  ++SHE RTP
Sbjct: 388 NRRLDESYKSFYELLAGQVSVSLRNAQAYEEERKKAQALAELDRTKTAFFNNVSHEFRTP 447

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  ILG  E +       L +E  +E +  +HR+   LL L+N +LD SRIEA R +   
Sbjct: 448 LTLILGPLEDVLNNQNARLTSEE-REQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVY 506

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L     E   + +   +   + +     P   +V+ D +   +++LNLLSNA KFT
Sbjct: 507 EPIDLAVFTTELASVFRSTIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFT 566

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            I G++ V++ W +     + ++D G GI   E+P +   F +         +G G+GL 
Sbjct: 567 FI-GQISVSLRWYTE-YVELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLS 624

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + Q ++  HGG   + SK+ +G   I +LP
Sbjct: 625 LVQDLIRLHGGSIRVSSKVNQGSSFIVLLP 654


>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
 gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
          Length = 850

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  KS FLA+MSHE+RTP+N I+G S +++   M     +  KEYI  ++ S   LL+LI
Sbjct: 244 NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----PKDQKEYINMLNISSLSLLDLI 299

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILD S+IEAGR EL  ++++L ++ +E   +  ++A EK+I     ID  +   +  D
Sbjct: 300 NDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGD 359

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              +RQV+ NL+SNA+KFT   G VH+     +           + D+G G++      V
Sbjct: 360 ATQLRQVLNNLVSNAIKFTHT-GYVHLHTQLETETDTETTIRFEVIDSGIGVSVDMHDAV 418

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLN 479
              F Q   +      G GLGL I + I+   GG+  I S++ +G      +   + VL 
Sbjct: 419 FDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKINSEVGKGSTFYFTITFEKNVLV 478

Query: 480 FIPEDNHES 488
               ++ ++
Sbjct: 479 SASLEDSKA 487


>gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 568

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 9/224 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S+F+A++SHEL+TPL +I GF+E ++       +  T  +++  I +  + L NLIN+I
Sbjct: 343 RSQFVANVSHELKTPLTSIKGFAETLK----FVEDLPTRNKFLDIIDKEAERLTNLINDI 398

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS IE   +++ E   +   ++ + I M+  +   K IEI    + +   +  D    
Sbjct: 399 LILSNIENN-HKMKEEEFNPAKVIEDVINMVTPQMNSKQIEINFSSNGTN-ELNGDRDKF 456

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+ILNL+ NA+K++     + +   +      YI ++DNG GI + ++P +   F +  
Sbjct: 457 FQMILNLVENAIKYSNDKTLISIRT-YDINDYTYIEVEDNGIGIPKEDLPRIFERFYRVD 515

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   A+ G GLGL I + I     G+  ++S L +G +    L
Sbjct: 516 KS--RAKGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFTIKL 557


>gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
 gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
          Length = 675

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 159/435 (36%), Gaps = 14/435 (3%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +   +    L  L ++ +        +        L           +         E  
Sbjct: 94  VCYAALFAGLVALQISPLAQPILPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS----ATLLIALSISALSNFMLP 160
                  +         +L  +     +T  +  ++              +         
Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                           +           +  ++   L   T     L  + + I     E
Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAIDI----TE 269

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++    M 
Sbjct: 270 HRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 326

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P +   ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++      ++
Sbjct: 327 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 386

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A++K I I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + V V  +    
Sbjct: 387 PMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGL 445

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G+    S
Sbjct: 446 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAAS 504

Query: 461 K-LREGVEVIAILPN 474
                G  +   LP 
Sbjct: 505 NGANLGTTMAVTLPL 519


>gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199]
 gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199]
          Length = 727

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/256 (35%), Positives = 142/256 (55%), Gaps = 1/256 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+EL+  +    +  ++A+  N AK  FLA+MSHELRTPLNAI+GF+E+I+   +   N+
Sbjct: 463 ISELKRREDALVKAVEQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQI-ASNS 521

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   EY G IH SG HLL +IN++LD+SRIEAGR  L E    L  ++ EC  M++ +A+
Sbjct: 522 DVQGEYAGYIHESGAHLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAE 581

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +          +  D +  +Q+++NLLSNAVKFT  GG V +T    +G    + 
Sbjct: 582 ADGLRLAMATVDPGLGIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMV 641

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G G+    +  +   F Q          G GLGL I ++++  HGG  +  S + E
Sbjct: 642 VRDTGIGVEANRVVELFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHE 701

Query: 465 GVEVIAILPNTRVLNF 480
           G  V   L + R++  
Sbjct: 702 GSTVTITLASDRLIEA 717


>gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
 gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
          Length = 1301

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + RA+  + AK+ FL+ MSHE+RTPLNAI+G + +         + +   E +  +  S 
Sbjct: 919  KARADAVSQAKTDFLSRMSHEIRTPLNAIVGMTSIARN---VADDRDRVLECLDKLETSN 975

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            Q+L++LIN+ILD+SRIE+G+ EL+   + + D VR    M++ +A++K +    +     
Sbjct: 976  QYLISLINDILDMSRIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQ 1035

Query: 359  -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIA 413
              ++  D   + QV++N++ NAVKFT  GG V  ++    G    +    S+KD G GIA
Sbjct: 1036 GLALVTDRLRLEQVLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIA 1095

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471
               + ++  +F Q          G GLGL I+  ++   GG   +RS L EG E      
Sbjct: 1096 SEAMDSIFNAFEQAEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRSVLGEGSEFYFTLT 1155

Query: 472  LPNTRVLNFIPED-NHESTQYKC 493
            LP  ++    P     E   +  
Sbjct: 1156 LPIGKLDGQRPRSREPEHHDFHG 1178


>gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 1118

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 6/257 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    +  +RAE+ + AKS FL+SMSHELRTPLN+I+GFS+++ +  +     
Sbjct: 733 ITRRKEAEEHLIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLLSMADL----P 788

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  +  I  SG HLL LIN++L+LS+IE G  EL  + + L D V  C+  +   AQ
Sbjct: 789 EKEQHQVDHISESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLSTVDPMAQ 848

Query: 345 EKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  +E+ +         V+ADE  ++QV+LN LSNA+K+    G+V +           I
Sbjct: 849 KYLVELERPDWKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLLETGKVRI 908

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V  S+ +      S  +G G+GL I Q ++   GG     S+  
Sbjct: 909 SVTDTGYGIPKDKQSNVFNSYDRLGH-ESSTIEGTGIGLNITQQLVFLMGGDIGFSSQEN 967

Query: 464 EGVEVIAILPNTRVLNF 480
           EG       P + +   
Sbjct: 968 EGSCFWVDFPLSTIHQT 984


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 3/294 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L + +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLAEQSKALAEQRDALDRKNEELNMAQAELQARADELQRSSKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLATEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G   S++D+G GIA      +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMIVSRQPGAGIVFSVRDSGIGIAPEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
                  G GLGL I++ + A  GG   + S   +G     +LP     +  PE
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEHYTEHGAPE 727


>gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1000

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +      R++AE  N  KS FLA+MSHE+RTP+NA+LG   +     +    +
Sbjct: 461 VTERKLLEQEMLAARQQAEAANAVKSEFLANMSHEIRTPMNAVLGLIYLCLQTQL----S 516

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +   + + + LL+++N+ILD+S+IEAG+ E+ +    L +++ +   +L+ R +
Sbjct: 517 AEQRDMLSRSYAAAESLLDILNDILDISKIEAGKLEVEQVEFPLAEVLDKVFNLLKFRVE 576

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           EK ++    +D  +  +V  D   + QV+LN+  NAVKFT  G     +    G      
Sbjct: 577 EKGLKHSVTVDEEVPSTVIGDPMRLGQVLLNIAGNAVKFTEQGSVSLELFCEAGVDGDLV 636

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
                +D G G++  ++  +  SF Q    I     G GLGL I++ ++   GG   + S
Sbjct: 637 LRFVFRDTGIGMSHEQMENLFESFNQTDTTITRKYGGTGLGLAISRRLVHLMGGDIQVES 696

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  +G      +    V   +P
Sbjct: 697 EPGKGSTFTFSVRFRSVERHVP 718


>gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
 gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
          Length = 915

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V      +V A     I    +       +    L
Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDVTGPIRNMVNA--VDRIRRGQLDSR----VEGHML 220

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+         KRA+E  
Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLANKRAQEAA 280

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           ++LD S++EA +  L      L   + E +I+L   A EK +E+   I+  +   V  D 
Sbjct: 337 DVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHINNDVPEQVVGDA 396

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTGIGISESQQAQLFQ 456

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +I     G GLGL I + ++   GG     S++  G      L
Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFRFHL 506


>gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 329

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      + +AE  +  KS FLA+MSHE+RTPLN+I+GF+ ++  E     + 
Sbjct: 85  IDHQKKIEEELIIAKDKAENLDRLKSAFLANMSHEIRTPLNSIVGFASMLVEE----EDK 140

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + YI  +  + + LL LI++ILDLS+IEAG  + +   +++ D   + +   +++  
Sbjct: 141 EERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIKED 200

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +    +     P    ++ D+K + QVI N ++NA+KFT+  G++ +   +  G      
Sbjct: 201 KPVPVVLASGLPDY-RIYTDKKRLMQVITNFINNALKFTSK-GQITLEYHFKEGTNEIEF 258

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   +  V   F +      +  +G GLGL I +SI+ + GG     S++ 
Sbjct: 259 SVTDTGIGIAPDAVGQVFDRFVKL----NTFSKGTGLGLSICRSIVEHLGGTIGAESEVG 314

Query: 464 EGVEVIAILPNTR 476
            G       P   
Sbjct: 315 VGSRFWFTHPCAE 327


>gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 762

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 143/255 (56%), Gaps = 8/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E         + +  AEE   AKS+FLA+MSHE+RTP+N ILG  E++  ++M P   
Sbjct: 157 VTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSKSMSP--- 213

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I  S + L+ ++N++LDLS+IE  + EL      L  ++   + ++  +A 
Sbjct: 214 -DQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQAH 272

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            K + +   I P+L+S V  D+  +RQV+LNLLSNA+KFTA+G   + V V  +S   Q+
Sbjct: 273 AKGLRVRITISPALASSVEVDDMRLRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSDTTQH 332

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS+ D G G+++ +   +   F QG  +I  +  G GLGL I+Q ++   GG+  + +
Sbjct: 333 LAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGELALET 392

Query: 461 KLREGVEVIAILPNT 475
           +   G  V  +LP +
Sbjct: 393 EEHVGTNVTVVLPVS 407


>gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03]
          Length = 2254

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E    +++ E +      E+  
Sbjct: 1681 VGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1740

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G +E+++  ++    +     Y+  I      LL LIN
Sbjct: 1741 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTSL----DREQNGYVDSIRVCADTLLTLIN 1796

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ +++   ++L D + E +  L    + + ++  + +D    +  V  D
Sbjct: 1797 DILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTIEDLDELDPNLLVMGD 1856

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V+            I+  + D G GI   ++  + 
Sbjct: 1857 PVRLHQIFMNLLSNSYKFTPQGSVTVNAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLF 1916

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    V + 
Sbjct: 1917 RPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFSL----VFSK 1972

Query: 481  IPEDN 485
             P+D 
Sbjct: 1973 APKDA 1977


>gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
 gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
          Length = 528

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 8/312 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                       ++   +  + ++  L   +      +    + N          ++   
Sbjct: 188 MLSTTFVPFLSLMLIAMIALMLMSNSLLKPIREIIKTSKSYAQGNFNARVNVTANNEFGE 247

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                + ++DE        N  +  F++++SH+ R+PL +I G+ E +     G +  E 
Sbjct: 248 LARYMEEMADE----LSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLD---GTIPLER 300

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +++Y+G +    Q L  L   +L+L+  ++   +L +S   + DI+   +   + R Q++
Sbjct: 301 HEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDR 360

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +        + V+AD   ++QVI NL+ NA+KFT  G ++ V V        +IS+K
Sbjct: 361 GIFLESVFLTDNTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVT-EKDNKIFISVK 419

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +     V   F +   +    + G GLGL I + I+  HG Q  + S+  +G 
Sbjct: 420 DEGIGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGS 479

Query: 467 EVIAILPNTRVL 478
           E I  LP  + +
Sbjct: 480 EFIFSLPKEKDM 491


>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 547

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/355 (29%), Positives = 172/355 (48%), Gaps = 13/355 (3%)

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
                 LTI     L+ A    ++   +    + + F   V+   T+  +++ +  ++  
Sbjct: 186 GDLAGALTISIPMELMKANLNKSILESVFLTVLIVFFTACVITFLTRRFITIPISKLTGF 245

Query: 191 GMLAT---------ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                             +  I     +            + L +++    +      K 
Sbjct: 246 AQELGRGNLTAQPEYYKSYGEIKELTERFTDMAHKLHDIYEQLESKVAERTAELAAANKE 305

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             E +  K+ FLA+MSHELRTPL AIL F+E +  ++MG L N   +EY+ DI  SG+ L
Sbjct: 306 LAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQL-NAEQEEYLKDIRDSGRQL 364

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           LNLIN++LDLS+IE+G+  L+ + +++ + VR    +L+  AQ+KNI++   I  +   +
Sbjct: 365 LNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQKNIDMQSAITGTNV-I 423

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPT 419
            ADE+ +RQVI NLL NA+KFT  GGR+ + V  T     G  +++KD+GPGI   +   
Sbjct: 424 IADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLLTVKDSGPGIPAKDRAR 483

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  SF QG         G GLGL + + I+  H G+  + S   +G      LP 
Sbjct: 484 IFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLESTEGQGSAFTVYLPA 538


>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1364

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 143/345 (41%), Gaps = 20/345 (5%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              ML           + A++    +                          L   + ++
Sbjct: 551 RAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +       DL  E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   ++
Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +   +        ++ +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +   
Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +++     K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784

Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          S++D G GI++ +   + + F Q   +      G GLGL I++ +
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 449 MANHGGQFLIRSKLREGVEVIAI--------LPNTRVLNFIPEDN 485
           +   GG+  + S    G E   +        L   R L  +P + 
Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEKSAPLQAQRELPVLPPEA 889


>gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B
 gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1969

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 135/250 (54%), Gaps = 10/250 (4%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  +D   ++AE  N AK  FL ++SHELRTP+N +L  ++++E  T+      T K
Sbjct: 941  RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 996

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E++  I  SG +LL+LIN+ILD S+IEAG+ E+ +   S++ ++   I ++     EK +
Sbjct: 997  EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGL 1056

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----I 403
            ++   IDP++   V  D++ ++Q++LN LSN++KFT   G++ + V   S    +     
Sbjct: 1057 DLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNH-GQIIIRVKLESDDSTHSLIKF 1115

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             ++D+G GI    +  +  SF Q         QG GLGL I++ +    GG   ++S+  
Sbjct: 1116 DVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVKVKSEFG 1175

Query: 464  EGVEVIAILP 473
             G      +P
Sbjct: 1176 VGSTFSFTIP 1185


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A+      ++ AE  N AKS FLA+MSHE+RTP+NAI+G SE++    +   
Sbjct: 250 HDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSELQH- 308

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  Y+  +  S + LL++INEILD S+IEAG  ELS   I L D+V E +  L  R
Sbjct: 309 ---QQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAAR 365

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TS 397
           A  K +E+  ++DPS+  V   D   +RQ+++NL+ NA+KFT   G + V V      T 
Sbjct: 366 AHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEA-GEIVVQVKSLEMSTD 424

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  ++D G GI +  +  +  +F Q   +      G GLGL IA  + +  GG   
Sbjct: 425 SVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMIW 484

Query: 458 IRSKLREGVEVIAIL 472
             S L +G      +
Sbjct: 485 AESMLGQGSVFHFKI 499


>gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 766

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+ AE  + AK+ FLA+MSHE+RTP+N ILGF++++    +G          +  I  S
Sbjct: 284 ARRSAEMASAAKTGFLANMSHEIRTPMNGILGFADLL----LGAGLPPDQHRQVKMIADS 339

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ ++ L+N+ILDLS++EAG+ E++     L+  +  C+ ++++ A++K I++ + I   
Sbjct: 340 GRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGIDLIRDIADD 399

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L   V  D   +RQV+LNLL NAVKFT+  G V + V         I ++D+GPGIA   
Sbjct: 400 LPRTVTGDGLRLRQVVLNLLGNAVKFTSE-GHVALRVHLDGADRLVIVVEDSGPGIAPER 458

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F Q      +   G GLGL I+  ++    G+  + S + EG   I  LP  
Sbjct: 459 QAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLPCE 517


>gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 161/370 (43%), Gaps = 41/370 (11%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++A S  A   F+L   V       V+ L   A ++  +  ++ A     A +F   I  
Sbjct: 177 VVAASYEAARTFILFDTVMAIIISAVIGLFLSARIARRLQRLAQAANRVAAGNFVGAINE 236

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR-------------- 251
            +      +       D ++A L   ++  +E     ++    + +              
Sbjct: 237 RIRDEIGDLAQAF---DQMLASLRSQRAELEERNCALQDSLARQEQLMAEVIRGKQAEAE 293

Query: 252 -----------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                            FLA+MSHELRTPLNAILG+++++ ++ + P   ++++ Y+  I
Sbjct: 294 AERARAAAEAASQAKSAFLATMSHELRTPLNAILGYAQLLHIQKVVP---DSHQPYLERI 350

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG+HLL+LI+ +LD +RIE G  +L    + +  +V E + M    AQ  +  I    
Sbjct: 351 LTSGRHLLSLISNVLDFARIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDC 410

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPG 411
            P +  +  D + +RQV++NLLSNA KFT   G + + V         G   ++ D G G
Sbjct: 411 PPEIGVIETDGRRLRQVLINLLSNAAKFT-EDGLIRLEVTAIQHNGRDGLRFAVHDTGIG 469

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   F Q   ++    +G GLGL +++ I+   GG   ++S +  G      
Sbjct: 470 IPPDKQHKLFQPFSQVDDSVTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVW 529

Query: 472 LPNTRVLNFI 481
           +P   V    
Sbjct: 530 IPVVPVPTSS 539


>gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 933

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 18/302 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L   N ++     + +    +L+ A    +E  ++    +  KS FLA+MSHELRTP
Sbjct: 475 SEELRMINEQLEERTRDAEKKSRDLQQANKDIEEKAEQLLLSSKYKSEFLANMSHELRTP 534

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  SE++     G    E  KE    IH SG+ LL+LIN+ILDLS+IEAG+ ++  
Sbjct: 535 LNSILLLSEMLSEGQ-GEEIPEEQKEVAKVIHSSGKDLLSLINDILDLSKIEAGKLDMLF 593

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
             ++L ++           AQ+KN++    I   L  + + D++  +Q+I NLLSN+ KF
Sbjct: 594 EEMNLSELPSYLEYNFSHLAQKKNLDFNISIAEDLPGIMYTDQQRFQQIIKNLLSNSFKF 653

Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   G V + V                      I + D G GI E +   +  +F QG  
Sbjct: 654 TEK-GSVSIEVNLADPEKTKNLPLKSKTDFWTEIKVSDTGIGIPESKQSIIFEAFQQGDG 712

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           A      G GLGL I +      GG   + S+  +G      +P+  + N + E+ H + 
Sbjct: 713 ASVRKYGGTGLGLSICREFAKLLGGWIFVDSEEGKGSTFTLFIPS--LPNGLEEEQHTAA 770

Query: 490 QY 491
            +
Sbjct: 771 AH 772


>gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
 gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
          Length = 2782

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 2/233 (0%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K +F++ +SHELRTPL AI G+ +V+ L     L  +    Y+  I  +   L  
Sbjct: 2540 EADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQI-NYLTIIKNNTNRLRA 2598

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LI +IL+ SR ++ + +L+ + + +  ++ E +  L+L  + K + +     P+L  V A
Sbjct: 2599 LIEDILEFSRPDSKK-KLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTLPPVTA 2657

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D+K + Q+I NL SNAVK+T  GG + V           I ++D G G++  ++  +   
Sbjct: 2658 DQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQLKKLFRP 2717

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +    ++    G GLGL IA+ ++  HGG+  + S+L +G      +P  +
Sbjct: 2718 FYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQ 2770


>gi|300690679|ref|YP_003751674.1| sensor hybrid histidine kinase [Ralstonia solanacearum PSI07]
 gi|299077739|emb|CBJ50377.1| sensor hybrid histidine kinase [Ralstonia solanacearum PSI07]
          Length = 610

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 189/488 (38%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69
           +   + P     GL   + ++ D     L          I    VL V  +  ++     
Sbjct: 1   MTASLRPLLTKFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 60

Query: 70  PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     GL W     
Sbjct: 61  LALAGWCLIMLCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAG 120

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++              
Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFALAEQAFPEH 178

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G+L    +F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 179 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +E+    +  +    Q +  L 
Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSESLAPLVEQLASGAQTIDLLF 287

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLTLTQRIPPLPVFGMAEP 347

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVTLRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G F +RS    G      L         P  
Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPADIKAPLA 464

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 465 AQPRSEQK 472


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWT-S 397
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +      +
Sbjct: 457 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVA 516

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
                I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 577 SVESELGKGSDFIITLPLYK 596


>gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 934

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 132/266 (49%), Gaps = 5/266 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+    AE E       E R++AE  N  K  FLA +SHELR+PLN ILG++++++   
Sbjct: 533 TERKQAEAERERLLQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRP 592

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   E  ++ +  I R+ +    LI ++LD+SRI  G+  L+   + L+ ++   +  
Sbjct: 593 FAP---EKAQQALQTIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALET 649

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +QL A+ K I++ + +   +  +  D   ++Q++ NLLSNA+KF+  G RV + +    G
Sbjct: 650 VQLSAEAKGIQLERHLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERV-G 708

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D G GI    +P V   F Q          G+GLGL I + +   HGG    
Sbjct: 709 AEAQMQVRDTGKGINPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQA 768

Query: 459 RS-KLREGVEVIAILPNTRVLNFIPE 483
            S    +G      LP  +V +   E
Sbjct: 769 ESGGEGQGATFKVRLPLLKVGHSSEE 794


>gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1038

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 123/266 (46%), Gaps = 19/266 (7%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +    ++      LE       + R+ AE+ N AKS FLA MSHE+RTP+N ++G + +
Sbjct: 341 SVEDITQQKQAQTALEQQNRALKDARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGL 400

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    + P      + +   I  SG  LL +IN+ILD S+IE+G+ +L E    L D V 
Sbjct: 401 LLDTELTP----DQRHFAETIRNSGDALLTIINDILDFSKIESGKLDLEEQPFELRDCVE 456

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + + +L  +A  K +E+  + D  +   V  D   +RQ+++NLLSNAVKFT  G  V   
Sbjct: 457 DALDLLAAKAAAKKLELGYRFDSHIPDQVRGDVTRVRQILVNLLSNAVKFTEAGEIVVSV 516

Query: 393 VGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G                    ++ D G GIA   +  +   F Q   +      G GLG
Sbjct: 517 TGRKLENEADSHPDSNRYHIQFAVNDTGIGIAPQRMHRLFKPFSQVDSSTSRQYGGTGLG 576

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVE 467
           L I + + A  GG   + S    G  
Sbjct: 577 LAICKQLSAMMGGTMWVES---HGTV 599


>gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
 gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
          Length = 870

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 127/249 (51%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLN+I+GFS++++   +   + 
Sbjct: 626 IQRYKTTEEELIAARDKALQADTLKSAFLANMSHEIRTPLNSIVGFSDLLKD--IDAFSP 683

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++  I+ +   LL LIN+ILDLSRIE+G  +   +  +L+ ++++     Q  + 
Sbjct: 684 EEVKQFVDTINTNCTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDS-QRLSM 742

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  K+     S+  D   ++QVI N ++NA KFT   G +               
Sbjct: 743 PPGVELVMKLPEESKSIVTDSIRLKQVINNFINNAKKFTTQ-GSITFGFQTEDPGYTVFF 801

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E     +   F +      S  QG GLGL I Q+I+    G+  + S+L +
Sbjct: 802 VEDTGSGISEENQRRIFERFYKVD----SFTQGAGLGLSICQTIVERFRGEINVSSELGK 857

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 858 GTRFTVRVP 866


>gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
 gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
          Length = 867

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RA + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   + 
Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++  I+ +   LL LIN+ILDLSRIE+G  +    A +L  I++E     +L   
Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                  +  +     V  D   ++QV+ NL++NA KFT   G +             I 
Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E     +   F +      S  QG GLGL I Q+I+    G   + S+L +
Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854

Query: 465 GVEVIAILP 473
           G     ++P
Sbjct: 855 GTRFEVVIP 863


>gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 526

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 188/458 (41%), Gaps = 12/458 (2%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
                 L      +    RE+  L    L   + ++   + L A             M  
Sbjct: 30  RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVALPAGVAMVC 89

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L     +++L ++  ++ I                  +     L+  ++P       
Sbjct: 90  AAFLFSAVGSIALARQGSSAGIATQSAE---------DFYLAATPGLVFFLDPHGSVATV 140

Query: 137 LTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
                      +           +      L    +      +   S+ +     +    
Sbjct: 141 GGRDRRDFLAWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRD 200

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                +  +     +     L+    +   ++  +  +  +      AE  N AKSRFLA
Sbjct: 201 QRQFAYLRMDMTARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLA 260

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHELRTPLNAILGFS+++  E  G   N+  +EY+G +  SG HLL+++N +LD+S+I
Sbjct: 261 AVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKI 320

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGRYEL   A  +   V+ C  ML L+A+ K + +  +I   L  V AD++ ++Q+++N
Sbjct: 321 EAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRGLGEVVADQRAIQQILIN 380

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+KFT  GG V V           +++ D G GI   ++  +   F Q        
Sbjct: 381 LVGNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRR 439

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 440 FEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEI 477


>gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes]
          Length = 624

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 147/277 (53%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 329 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 384

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 385 AVQILDLYKKDGNSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 444

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K+I I    D     +  D   + ++ILNLLSNA+KFT  GG +
Sbjct: 445 NLIEEITLSVVYYAESKDINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNI 504

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +V +         IS+KD G GI + +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 505 YVNIK-DCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFV 563

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S + +G E I  +P   V      +N 
Sbjct: 564 NMHEGTIDIQSVIGKGSEFIINIPVKLVKEESESENS 600


>gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 878

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 11/259 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + + ++ E         +T++ A   N AKS FLASMSHE+RTPLN I+G +E++    +
Sbjct: 350 QVNRMMEEQNRQTEEILKTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL 409

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   KE + DI  S   LL L+N+ILDLS+IE+G  +LS     + ++V + +I+ 
Sbjct: 410 SDH----QKEVLTDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILF 465

Query: 340 QLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q +A  K +E+   +D      +  D+  ++Q+I+NL+SNAVKFT   G + V V +   
Sbjct: 466 QSKATSKQLELNINLDERIPPRIMVDDHRIKQIIMNLVSNAVKFTHE-GHISVDVDYQES 524

Query: 399 RGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             Q        + D G GI   ++ T+   F Q    I     G GLGL I + ++A  G
Sbjct: 525 PTQKSVFLTFRVTDTGVGIERDKLNTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMG 584

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+    S    G      +
Sbjct: 585 GKLTATSSKGIGTSFEFSI 603


>gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 919

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 140/306 (45%), Gaps = 20/306 (6%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                +   + K               I E +         R+ AEE N AKSRFLA+MS
Sbjct: 551 GSVIPVEVKIGKIYYSNQEHIMALVQDITERKQVHQELI-ARRSAEEANRAKSRFLANMS 609

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+NA+LGF+ ++E     P          G I RSG HLL L+N ILD+SRIEAG
Sbjct: 610 HEIRTPMNAVLGFARMLEN---DPALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAG 666

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L      L  ++ + + M +L AQ+K +E+  + DP L   + AD+  + Q++ NLL
Sbjct: 667 QSGLHPEDFHLPGLIDKLMTMFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLL 726

Query: 377 SNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFG 425
           SNA+KFT+  G V +T+                 G    ++D+GPGI   +   +   F 
Sbjct: 727 SNAIKFTST-GEVKLTISSKPPGPADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFF 785

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
           Q     K    G GLGL I++      GG   + S+   G      +P  R      P  
Sbjct: 786 QTQN--KMHPGGTGLGLTISREYAVLMGGNLTVSSQEGRGSCFRLEIPVKRARTQTTPRQ 843

Query: 485 NHESTQ 490
              + Q
Sbjct: 844 PASAMQ 849


>gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1019

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 18/274 (6%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      +K+AEE N AKS FLA+MSHELRTPLN ILG+++++         +   K  +
Sbjct: 613 ELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILGYAQILM---FDESLSAEQKSSL 669

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I + GQHLL LI ++LD S+IEA R EL  +A+     + + I   Q++A EK + + 
Sbjct: 670 SIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFHYFILDIIQTCQIKATEKQLLLN 729

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSG----------R 399
             IDP +   +  D++ +RQV+LNLL NA+KFT  G  V  V +                
Sbjct: 730 YDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSVVLDVQLSQPPQTPPKSPKHHWH 789

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + +++D G GI       +   F Q          G GLGL I+Q ++A  GG+  + 
Sbjct: 790 RVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRSRPH-GTGLGLAISQKLVAMMGGELQLT 848

Query: 460 SKLREGVEVIAILPNTRVLNFIP--EDNHESTQY 491
           S   +G      L  + VL   P   ++  +  +
Sbjct: 849 SYPNKGSCFSFDLELSEVLVSPPLVAEDQATRDH 882


>gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 617

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 151/277 (54%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA +SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLAKISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKEDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + +++LNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +VTV         IS+KD G GI E +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593


>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
            regulator [Geobacter bemidjiensis Bem]
 gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
            regulator, SSF and PAS domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1323

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 181  SMHVLDISLAGMLATALSFFTYITYHLFKSNV---KILSCQAEKDDLIAELEVAKSLSDE 237
              H   +++A  L  +      +   +             +  +  L   +         
Sbjct: 794  RPHAYTMAMAAPLYDSEGEVIAVIESVRDITELKEGEDELKRHRAHLEELVRERTMELLV 853

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++RAE  N AKS FL+SMSHELRTPLNAILG++++++ +       +  ++ +  +   
Sbjct: 854  AKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD---NLTDAQRQQLEIVRGC 910

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G+HLL+LIN++LD+ +IEA + EL+E +  L  ++ +   + +++A EK++    +    
Sbjct: 911  GEHLLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNR 970

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEG 415
            L   V  D++ ++Q++LNLLSNAVK+T   G V V V + S  G +   I D G GI   
Sbjct: 971  LPRAVRGDQRKLKQILLNLLSNAVKYTHR-GCVTVRVRYHSSTGVFACEITDTGTGIPRD 1029

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            ++  +   F Q +   +   +G GLGL I + +++   GQ  + S+   G      LP  
Sbjct: 1030 KLGIIFEPFVQLADGGQIR-EGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELPLP 1088

Query: 476  RVLN 479
             V  
Sbjct: 1089 TVTE 1092


>gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
 gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
          Length = 668

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 159/435 (36%), Gaps = 14/435 (3%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +   +    L  L ++ +        +        L           +         E  
Sbjct: 87  VCYAALFAGLVALQISPLAQPILPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 146

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS----ATLLIALSISALSNFMLP 160
                  +         +L  +     +T  +  ++              +         
Sbjct: 147 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 206

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                           +           +  ++   L   T     L  + + I     E
Sbjct: 207 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAIDI----TE 262

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++    M 
Sbjct: 263 HRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 319

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P +   ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++      ++
Sbjct: 320 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 379

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A++K I I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + V V  +    
Sbjct: 380 PMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGL 438

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G+    S
Sbjct: 439 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAAS 497

Query: 461 K-LREGVEVIAILPN 474
                G  +   LP 
Sbjct: 498 NGANLGTTMAVTLPL 512


>gi|302669371|ref|YP_003832521.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
 gi|302397035|gb|ADL35939.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
          Length = 1409

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 22/289 (7%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
            G       F  +I +   +S +               +          +  AE  N AKS
Sbjct: 770  GSFVLVGLFIAWIVWAFLRSTI---------------IRKQYKEIAIAKDEAERANTAKS 814

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG---DIHRSGQHLLNLINE 307
            RFLA+MSHE+RTP+N I+G  E++  E    + +  Y   I    DI  + + LL LIN+
Sbjct: 815  RFLANMSHEIRTPINTIMGMDELLLREAHDNVPDSYYTAVINYGVDIKNAAESLLGLIND 874

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            +LD+S+IE+G+  L E     ++ +R  I M+++++ EK++     ID S+   ++ D  
Sbjct: 875  VLDISKIESGKMHLVEQEYDTVECLRGIITMIRVKSSEKDLSFDTNIDESIPKRLYGDIG 934

Query: 367  GMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
             ++Q++LNLL+NAVK+T  GG    V VT           S+KD G G+    +  + ++
Sbjct: 935  KIKQIVLNLLTNAVKYTEKGGFTLTVTVTSKNADKCSLRFSVKDTGIGVKAENMEKLFSA 994

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + +      S  QG GLGL I++       G+    S   EG + I  L
Sbjct: 995  YERLDEEKNSGIQGTGLGLDISRRFAELMNGRLWCESTYGEGSDFILTL 1043


>gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
 gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
          Length = 1430

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 10/260 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL+  +    + R+ A     AKSRFLA+MSHE+RTPL  I+   E+ E   +G    
Sbjct: 777  ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGY--- 833

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++    + +S  +LL+++N+ILD S+IEAG+  L     SL  +      +   +A 
Sbjct: 834  -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 892

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
             K ++    +DP L   V  D+  + QV+ NLLSNA+KFT   G V +           +
Sbjct: 893  AKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT-EYGTVGLAAKLLDLDGEQQ 951

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 + D+G GI+E  I  +   F Q          G GLGL I++ ++   GG   + 
Sbjct: 952  QICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGSLNVT 1011

Query: 460  SKLREGVEVIAILPNTRVLN 479
            SK+  G      LP   +  
Sbjct: 1012 SKINIGSTFSITLPLKTLAE 1031


>gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
 gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
          Length = 999

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/518 (20%), Positives = 186/518 (35%), Gaps = 47/518 (9%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
           V   +             +  F    +        +    L   V  +  +  +      
Sbjct: 211 VADAVRTATAPKTTALFKRAVFTAVALVAVWLVFRQDIYPLLFLVPPITLLVAFRGGGIG 270

Query: 72  FPMWSLITLAVYAANLSLGK-KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
             ++  +   V +     G   ++NS     +        +      GL    +      
Sbjct: 271 TVLFVPMIAGVASWMTVAGYGPIVNSSKSALDAVFVLQAFVAANFLTGLPIAAILAGRER 330

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-----------PVVVALSTQAI 179
                     +   L   ++ + L        ++ S              V   ++++  
Sbjct: 331 MTEELARGRGELGLLAETITDAVLRLDRDRVCIYASPSVEDVMGRPPEDLVGHPIASRGP 390

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD----------------- 222
              H    S    L +  S    ITY     + +      E D                 
Sbjct: 391 EDAHARIESALDSLLSGQSDKERITYRRLLDDEEGTPVFIEADCAIVLDPITGERDGVVV 450

Query: 223 --DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
               + E    + L    R+ AE    AKS FLA+MSHE+RTP+N +LGF+E++    + 
Sbjct: 451 SARDVTERVELELLLTRARRHAENAARAKSEFLANMSHEIRTPMNGVLGFAELMLQGDLE 510

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P N    + +   I  SG+ ++ L+N+ILDLS+IEAG+  +    + L+  + EC+ +  
Sbjct: 511 PDN----RRHTEMIVESGRSMMLLLNDILDLSKIEAGQIAIDSQPVDLVSTLAECVQLHL 566

Query: 341 LRAQEKNIEIFQKIDP----------SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
             A+ K + +                    V  D   +RQ++LNL+ NAVKFT   G V 
Sbjct: 567 PNAEGKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQIVLNLIGNAVKFTEK-GSVD 625

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V +   + +   + +KD G GI    + T+   F QG         G GLGL I++ +  
Sbjct: 626 VQLSIQAEQF-RVDVKDTGIGIGAKRVQTIFAPFTQGENDTSRRFGGTGLGLTISRQLAE 684

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             GGQ  + S++  G     ILP   V   +P  +  +
Sbjct: 685 LLGGQIEVCSEVGIGSTFSLILPAHYVEPEVPALSQAA 722


>gi|163802031|ref|ZP_02195927.1| sensor histidine kinase [Vibrio sp. AND4]
 gi|159174172|gb|EDP58980.1| sensor histidine kinase [Vibrio sp. AND4]
          Length = 806

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 21/307 (6%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229
             ++   L  +L        YI   + +   KI   +A            E   LI +  
Sbjct: 274 RGIIPFLLVCVLVGYYLLNRYIVEPIVRIAQKIDDSKAGSIIDIGYDSADEIGHLITKFN 333

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R +A     AK+ FLA++SHE+RTP+N +LG ++++    +    NE  ++
Sbjct: 334 EKTVYLEQERAKALASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTRL----NEEQRK 389

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  ++ SG H++ L+NEILD S+IE G  E+  +   +  I+     +      EK +E
Sbjct: 390 YLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSINSIYDSLCAEKGLE 449

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
                + P       D+  +RQV+ NL++NAVKFT   G V V +       Q   YIS+
Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLINNAVKFTDQ-GYVEVELTEQVSGDQTHLYISV 508

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI       +   F Q   +      G GLGL I + I  + GG   ++S+   G
Sbjct: 509 KDTGIGIRPDAQKRIFRPFEQAESSTTRRYGGTGLGLAIVKQISDHMGGSVTVQSQEYIG 568

Query: 466 VEVIAIL 472
              +  L
Sbjct: 569 TNFVVEL 575


>gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 867

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RA + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   + 
Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++  I+ +   LL LIN+ILDLSRIE+G  +    A +L  I++E     +L   
Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                  +  +     V  D   ++QV+ NL++NA KFT   G +             I 
Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E     +   F +      S  QG GLGL I Q+I+    G   + S+L +
Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854

Query: 465 GVEVIAILP 473
           G     ++P
Sbjct: 855 GTRFEVVIP 863


>gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1112

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 9/246 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                 ++ AE  N AK+ FLA MSHE+RTP+N I+G S +++   +    N+    ++ 
Sbjct: 459 EEMVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVGMSNLLKETDL----NQQQSYFVD 514

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  S   LLN+IN++LDL++IEAG+  L E    L D+V + +++   +A EK++ +  
Sbjct: 515 TLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTDLVHDALVVFHAKAVEKSLRLHC 574

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDN 408
            IDP L   +  D     Q+ILNL+ NA+KFT   G V V +   +  G     + +KD+
Sbjct: 575 LIDPHLPRWLILDPVRYTQIILNLVGNALKFT-KHGSVMVHLSLVTEGGSDMLRLEVKDS 633

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E ++  +  +F Q   +   + QG GLGLP+ +  +    G   + SK   G   
Sbjct: 634 GIGIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRKFIELMDGDIRVVSKEAVGTTF 693

Query: 469 IAILPN 474
            A +P 
Sbjct: 694 TADVPL 699


>gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2151

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/408 (24%), Positives = 165/408 (40%), Gaps = 26/408 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            R  +++  +  G    ++ L    T++  ++   +  T  I + ++ ++  M   A+   
Sbjct: 1303 RNIVVLPVLFEGEVKAVIELASFHTFSEVHMGFLEQLTESIGIVLNTIAANMRTEALLKQ 1362

Query: 167  FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               +   L    + +   +      A  L  +          L  +N ++        + 
Sbjct: 1363 SQALTDELRKQQEELTETNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAKLLSEQ 1422

Query: 225  IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              E+E      ++ +   EE        +  KS FLA+MSHELRTPLN++L  S+ +   
Sbjct: 1423 KTEVERKNGEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDN 1482

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              G L +    E+   IH SG  LL LIN+ILDLS+IE+G   +    +   D+      
Sbjct: 1483 VDGNLTS-RQVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDR 1541

Query: 338  MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +  A +K +E    +  SL   +  D K ++QV+ NLLSNA KFT   G V + +G  
Sbjct: 1542 TFRQVADKKGLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFT-ESGSVSLDIGLA 1600

Query: 397  SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G                  ++ D G GI + +   +  +F Q   +      G GLGL 
Sbjct: 1601 KGGWSPDHAMLSAAPAVVAFTVVDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1660

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            I++ I    GG+  + S +  G      LP    +   P        Y
Sbjct: 1661 ISREIARLLGGEIRLESDVGTGSAFTLYLPLAF-MAERPAQEPARWDY 1707


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 5/299 (1%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               +   +         A  +    +     FK  +  +   +E+     E +       
Sbjct: 956  AFRLEYRLRRFDGEYRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRLLQREQ 1015

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              R  AE+ N  K  FLA +SHELR+PLN ILG++++++ + +   +  T+K+ +  I R
Sbjct: 1016 AARTEAEKANRIKDEFLAVLSHELRSPLNPILGWAKLLQTKKL---DGATFKQALSTIER 1072

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            + Q    LI ++LD+SRI  G+  L+   ++L  I+R  I  + L A  K+I+I   +D 
Sbjct: 1073 NAQLQAQLIEDLLDVSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQTTLDE 1132

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            ++  +  D   ++Q++ NLLSNAVKFT+ GGRV V +    G+   I++ D G GI    
Sbjct: 1133 TVGQILGDPARLQQIVWNLLSNAVKFTSTGGRVEVLLESV-GQSAQITVSDTGKGITSEF 1191

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            +P V   F Q          G+GLGL I + ++  HGG     S    +G       P 
Sbjct: 1192 LPYVFDYFRQADSTTTRKFGGLGLGLAIVRHLVELHGGTVGAESPGENQGATFWVKFPL 1250



 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 9/317 (2%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +            + + +A    T  +    +  + F+          +         +A
Sbjct: 250 LPSGAWQRTPHQAVVVPIASSGQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASIA 309

Query: 232 KSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + + +E RKRAE   E + AK+ F +++SHE RTPL  +LG  E +  +   PL   + 
Sbjct: 310 NAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLG-PSQ 368

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E I  + R+G  LL L+N +LD SRIEAGR E    A  L     E   + +   +   
Sbjct: 369 QERIEIVQRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAG 428

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +     P    V+ D +   +++LNLLSNA KFT   G + V++ W       +S+ D
Sbjct: 429 MRLMVNCPPLPEPVYVDREMWEKIVLNLLSNAFKFTL-NGEISVSLEWVK-HSVKLSVND 486

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E EIP +   F +   A   + +G G+GL + Q ++  H G   + S    G  
Sbjct: 487 TGIGIPEAEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTC 546

Query: 468 VIAILPNTRVLNFIPED 484
               +P       +P++
Sbjct: 547 FTIFIPTG--TAHLPQE 561


>gi|311747684|ref|ZP_07721469.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
 gi|126575672|gb|EAZ79982.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
          Length = 981

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  ++  +E R  AE+ +  KS FL+ +SHELRTPLNAI G    +  E      N
Sbjct: 588 ISEQKEFENKLNEARMTAEKASQIKSEFLSMISHELRTPLNAISGSVYSLLQE----ETN 643

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            + +  +  I+ +  +L+ +IN++LD  +IEAG+  + +      +++ + I  L   A 
Sbjct: 644 SSQESALNTINFAVDNLIIMINDLLDFQKIEAGKLTIEKEPFQFQNLINQIIKGLSFHAG 703

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-- 400
           +    +   I   L   +  D+  + Q++ NL++NA+KFT  G   V V +  +S     
Sbjct: 704 DSKNNLNLHISEGLEIWLKGDKTRLSQILNNLITNALKFTNEGDVDVTVKLKESSNEKAK 763

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y  +KD+G GIA+     +   F Q      +   G GLGL I + ++   GG   + S
Sbjct: 764 VYFEVKDSGIGIAKENQDKIFNDFDQVRPTFSTKYGGTGLGLSITRKLLQLMGGTIQLES 823

Query: 461 KLREGVEVIAIL 472
           ++ +G +    L
Sbjct: 824 EVGKGSKFYFEL 835


>gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1164

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 3/270 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L +    +   +   D    EL  A++  +E  +  +  +  KS FLA+MSHELRTPL
Sbjct: 450 EQLAEQAQILADQRDAMDRKNNELNEAQTQLEERAEELQRSSKYKSEFLANMSHELRTPL 509

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+ L  ++++       L+ E  K +   I+ +G  LLNLIN+ILD+S++EAG+ E+   
Sbjct: 510 NSSLILAKLLAENPQENLSPEQVK-FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPE 568

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
             S+  +V     + Q   Q+K +E   ++ P    + + D + + Q++ NLLSNAVKFT
Sbjct: 569 NASVPRLVDGLRSLFQPLTQDKGLEFKVELQPGAPQMLFTDRQRVEQILKNLLSNAVKFT 628

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G+V +TV    G G   +++D+G GIA+ +  ++  +F Q          G GLGL 
Sbjct: 629 EK-GQVSLTVSAQPGAGIAFAVQDSGIGIAQDQQQSIFEAFRQADGTTNRRYGGTGLGLS 687

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I++ +    GG   + S+   G     +LP
Sbjct: 688 ISRDLATLLGGSISVSSEPGRGSIFTLVLP 717


>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
 gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
          Length = 1248

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 13/274 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRT 262
            +  S +           ++ ++  A++ ++     +  AE+    KS FLA+MSHE+RT
Sbjct: 674 RISGSAIDPSDLSRGTVWMLEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRT 733

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G + +     + P      K+Y+  I +SGQHLL +IN+ILD S+IEAG+ E+ 
Sbjct: 734 PMNAIIGMAHLALKTDLDP----RQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVE 789

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
            + I L  ++     ++  +A  K +E+   +   +   +  D   + QV++N  +NAVK
Sbjct: 790 ATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVK 849

Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G + V V      G        ++D G G+ + +   +  SF Q   +      G
Sbjct: 850 FTEA-GEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGG 908

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ +    GG   + S   +G      
Sbjct: 909 TGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFT 942


>gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 867

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R RA + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   + 
Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+++  I+ +   LL LIN+ILDLSRIE+G  +    A +L  I++E     +L   
Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                  +  +     V  D   ++QV+ NL++NA KFT   G +             I 
Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E     +   F +      S  QG GLGL I Q+I+    G   + S+L +
Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854

Query: 465 GVEVIAILP 473
           G     ++P
Sbjct: 855 GTRFEVVIP 863


>gi|98990176|gb|ABF60145.1| two-component histidine kinase [Monilinia fructicola]
          Length = 1316

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + ++  L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILDLS+IEA R  + E   +L   V
Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L ++A EK +++  ++D S+   V  D   +RQ+ILNL+ NA+KFT   G V +
Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSL 866

Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           T+                  + D G GI   ++  +  +F Q   ++     G GLGL I
Sbjct: 867 TIQKAVQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++    G   ++S+  +G      
Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 1230

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 20/317 (6%)

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAE 227
            + + +       +     +   +++          Y + +  ++    + E+   +L  +
Sbjct: 774  LTIPIRVLPPWWLSHPAFAAYLLVSLLFVLLLVNHYRIRRQRLEERYAEQERINRELDQK 833

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            ++   +  ++ RK AEE   AKS FLA+MSHE+RTPL  +LG   ++    +    N+  
Sbjct: 834  VKERTAEIEKARKVAEEATKAKSLFLANMSHEIRTPLTGMLGMFSLLAKTKL----NQNQ 889

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            + ++     + ++L  L+N++LD+  IE+G   L E+       +     + + RA+ + 
Sbjct: 890  RSFLDYSRTAAENLNQLVNDLLDVESIESGTLPLHETRFDPEKALAYVYHLFEERAKAQG 949

Query: 348  IEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401
            ++ F  I+ S     V  D     Q++ NL+SNA+K+T   G + + +            
Sbjct: 950  LDFFLDIEASDPSLEVLGDRNRFIQIVTNLVSNALKYT-ESGSISLKLTIAPAELTQAEA 1008

Query: 402  ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   +++ D G GI + +  ++  SF Q       + +GVGLGL I + ++    G 
Sbjct: 1009 QRRRSYTVTVSDTGIGIPKDKTGSIFESFTQLDTGYAKSSKGVGLGLAIVKQLVDAMDGT 1068

Query: 456  FLIRSKLREGVEVIAIL 472
              + S    G      L
Sbjct: 1069 ISVESSPG-GTSFTVSL 1084


>gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb18]
          Length = 2333

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E    +++ E +      E+  
Sbjct: 1760 VGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1819

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G +E+++  ++    +     Y+  I      LL LIN
Sbjct: 1820 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTSL----DREQNGYVDSIRVCADTLLTLIN 1875

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ +++   ++L D + E +  L    + + ++  + +D    +  V  D
Sbjct: 1876 DILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTIEDLDELDPNLLVMGD 1935

Query: 365  EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421
               + Q+ +NLLSN+ KFT  G   V+            I+  + D G GI   ++  + 
Sbjct: 1936 PVRLHQIFMNLLSNSYKFTPQGSVTVNAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLF 1995

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L    V + 
Sbjct: 1996 RPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFSL----VFSK 2051

Query: 481  IPEDN 485
             P+D 
Sbjct: 2052 APKDA 2056


>gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
 gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
          Length = 801

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 18/282 (6%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++++    + DD+  E E  +         AE+ N AK+ FL+ MSH++RTP+N I+G +
Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427

Query: 272 EV----IELETMGPLN---NETYKEY------IGDIHRSGQHLLNLINEILDLSRIEAGR 318
            V    ++ E  G  N   +E    Y      +  I  S   LL+LIN+ILD+S+IE+G+
Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            +++   ++L D +R   +M++ +A+E+       + P +    + D   + Q++LNLL 
Sbjct: 488 MKIANREMNLKDAIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547

Query: 378 NAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+K+T   G + + V         +  +  I D G G++E  +  +   F Q       
Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +G GLGL I++ ++    G     S+  +G      +P  
Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPSKGTVFTVKIPMK 649


>gi|295094189|emb|CBK83280.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 581

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 9/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +    +    A      ++ FLA+MSHE+RTP+N ILG  ++     M     
Sbjct: 179 VTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMAEDLQ 235

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y++ +         LL LIN+ILD+S++EAG+Y++ E    +   + + +      A 
Sbjct: 236 ADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQVPIAT 295

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +++      ++   V  D + ++QV+  LLSNA+KFT+  G V V +         I
Sbjct: 296 NKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSE-GSVRVKIASMDDGDNKI 354

Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G GI+E  +  +   F Q   +      G GLGL I + I+   GG   ++
Sbjct: 355 KIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNITVQ 414

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           SK   G   I  +P   +      D 
Sbjct: 415 SKEDIGSTFIVEIPLKVIKAADAADE 440


>gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1032

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 162/479 (33%), Gaps = 37/479 (7%)

Query: 21  DHLGLEYPSKMDFDREIITLHV------ESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74
           + L    P     +     L         +    +     FV+    +            
Sbjct: 281 NQLVAASPGVAGDEARTGRLLALDPSRDRTKPEQAAFRDGFVIFHGTLDATGWTLAYALP 340

Query: 75  WSLITL--------------AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
           W+ +                   A    L  +              R++         + 
Sbjct: 341 WTDVVANVAWRASLLLGASLLTIAIMWILLVRFHRRVFASVYARSQRVFDSEALCRSVIE 400

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
              + L         ++ +  +   +IA   S               F    A       
Sbjct: 401 TAPIGLGLISRADGHFMLVSPALAEMIARLGSDYRALSAQAVARYDAFIAGGAAGGTLQT 460

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              + +                  Y      +  ++    +  L+          +E  +
Sbjct: 461 DFVLAEADAGAAPLHLEVSACGARYQEIDVLIVAVADVTARRQLV-------QQLEEAVR 513

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A+  N AKS FLA+++HE+RTPLN ILG  E+++   +    + +    +  +  +   
Sbjct: 514 AADSANAAKSSFLAAITHEIRTPLNVILGNLELLDRSAL----DASQHGRVQTLRAAASG 569

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLS 359
           LL L+++ILD S+IEAG   +      +I ++   +      A+ K + +F +ID     
Sbjct: 570 LLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAFAPVAKAKGLSLFCEIDASDAQ 629

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415
            +  D   + QV+ NLLSNA+KFTA  G V V V   S         I+++D G GIA  
Sbjct: 630 RMRGDPTRLGQVLGNLLSNAIKFTAS-GHVLVRVSVASAGCGDAELSIAVEDTGIGIAGA 688

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +  +F Q   +I     G GLGL +   + A  GG+  + S    G      +P 
Sbjct: 689 DRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAMGGRIDVASVPGTGSRFTLTVPL 747


>gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
 gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
          Length = 611

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 375 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 491

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +         IS+ D G GI +  +  +  
Sbjct: 492 MDADKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 550

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +  +LP  +   
Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLPMAKEEE 607


>gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS+F++++SHE RTPL +I     ++  +  G +N++  KE +  I    + L  L+
Sbjct: 385 DELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDD-QKELLQVIQEDSERLNRLV 443

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           NE+LDLSRIE+G+ ++      + +I++  +  L+++A+EKNI+I   +  +L  V AD 
Sbjct: 444 NELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVRADH 503

Query: 366 KGMRQVILNLLSNAVKFTAIGGR--VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
             +  V+ NL+ NA+++T   G   +++    T+ +    S+ DNG GI+E     +   
Sbjct: 504 TKIGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVT-SVTDNGSGISEEYQKIIFDK 562

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F Q +    +   G GLGL I++ I+  HGG   + S+L EG      L
Sbjct: 563 FLQVNGGESTQ-GGAGLGLAISREIVRAHGGDMWVDSELGEGSTFYFTL 610


>gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1380

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 143/277 (51%), Gaps = 2/277 (0%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             F   I        V ++    E+  +   L+              +    K  FLASMS
Sbjct: 842  VFEARIAPSANDEVVMVIRNITERKRIEQTLQQQTDELSIANAELAKAARLKDEFLASMS 901

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPL  IL F+E +  +  G LN     + +  I  + +HLL+LIN+ILDLS+IEAG
Sbjct: 902  HELRTPLTGILAFTEALRYDQYGALNQ-AQAQALQQIDENSRHLLDLINDILDLSKIEAG 960

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            +  ++  ++ + +I +  I M+Q  AQ K +E+  +   + + + AD + ++Q+++NLLS
Sbjct: 961  KLTINHQSMLIDEICQASIRMVQKLAQNKQLELLYEPCAADAMLCADSRRLKQMLVNLLS 1020

Query: 378  NAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NAVKFT  GGR+ ++V   S      +++ D G GI   +IP +   F Q    +     
Sbjct: 1021 NAVKFTPAGGRIGLSVKLDSQFHQVELTVWDTGIGINTQDIPKLFRPFSQLDSKLSRQYA 1080

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            G GLGL +   +   HGG+  ++S++  G +   +LP
Sbjct: 1081 GTGLGLALVYHMANLHGGRVELQSEVGVGSQFRLVLP 1117


>gi|66816785|ref|XP_642392.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74841827|sp|Q86CZ2|DHKK_DICDI RecName: Full=Hybrid signal transduction histidine kinase K; AltName:
            Full=Protein sombrero
 gi|30230651|gb|AAP20874.1| sombrero SmbA [Dictyostelium discoideum]
 gi|60470136|gb|EAL68116.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1213

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 154/392 (39%), Gaps = 19/392 (4%)

Query: 115  IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
            +   LC+ L             + +  S   +I+  +      +    + LS + +    
Sbjct: 686  LCFTLCFALTINSYYTGGHQSTIRLLMSTVPIISALVLGRKASIQWSLMVLSIYLLFF-- 743

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               A +  H     +  ++  +   F      +  + +  L  Q   D+   E ++  + 
Sbjct: 744  --VANLYGHEYVQGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQ 801

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +  A E   A+  FLA+MSHE+RTPLN ++G + ++             K     +
Sbjct: 802  LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKAV 858

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
               G  LL L+N+ILDLS++EA +  L      + ++ ++   +L  +A EKNI +  ++
Sbjct: 859  KSCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEV 918

Query: 355  DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ---------YI 403
               + S+   D   + Q+++NL  NA+KFT  G  ++ + +                   
Sbjct: 919  SDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISF 978

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             +KD G G+       +  +F Q   +      G GLGL +   ++    G+  + +   
Sbjct: 979  RVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPD 1038

Query: 464  E-GVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
              G     ILP     +   +  +   ++K +
Sbjct: 1039 CDGSTFWFILPLEEGTDQSMQQMNNGARHKAF 1070


>gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1115

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 137/253 (54%), Gaps = 6/253 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      + +AE+   +++ FLA+MSHE+RTP+NA++GFS+++  +       
Sbjct: 514 ITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLDDVF----E 569

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  I++S + LL+L+N+ILD ++++ G++E      SLI+ +   +  L L+A 
Sbjct: 570 AEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVVSTLWLQAN 629

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +   + P ++ +       +RQV+ NL+ NA+KFT +GG V++ VG         
Sbjct: 630 KKELYLNVSVAPEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGG-VNIKVGVKPSGCIEF 688

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D G G+ + ++  V  +FGQ   ++     G GLG  I++ ++   GG+    S   
Sbjct: 689 AIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGKISATSTYG 748

Query: 464 EGVEVIAILPNTR 476
           EG      LP   
Sbjct: 749 EGSCFSFTLPLAP 761


>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1324

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 19/282 (6%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             E    I   +  ++   +  +RAE  + AK  FLA+MSHE+RTPLNA+LG+ +++  + 
Sbjct: 786  VEIVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADR 845

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            +        +E +  +  S   LL++IN+ILD S+IEAGR EL      L+  +   +  
Sbjct: 846  L----EPRQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKE 901

Query: 339  LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             ++ A+ K +++   I  ++  +V  D   +RQV+ NL++NAVK+T  GG V + V    
Sbjct: 902  QEVLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGG-VRLGVAIAD 960

Query: 398  GR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                             ++ D G GI   +  T+  SF Q    +   + G GLGL I +
Sbjct: 961  APCAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICR 1020

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486
             +    GG   + S   +G       P    RV      D  
Sbjct: 1021 RLAGLMGGTISLESTPGQGSAFRLECPFDAARVEPASVADTP 1062


>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1126

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 155/362 (42%), Gaps = 10/362 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
             G  W L   +           +       ++IA+    +++  L  ++      + + 
Sbjct: 323 VDGHLWGLSLELPEKEAFARIQQLEQIFVIAMIIAIVCVVIASHFLSNSITAPL--LRLT 380

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            + + + +  +    ++      +         + +S  + +    +++    ELE   +
Sbjct: 381 WAAERVSAGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKDQN---EELEANLA 437

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                    E  +  K  FLA+ SHELRTPL+ ++G +E +     GP++  +++  +  
Sbjct: 438 TIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEI 496

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQ L +L+N++LD  ++  G  ++++    L       + + Q     K+I I  +
Sbjct: 497 IINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQ 556

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +D SL  V+ DE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI 
Sbjct: 557 VDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIP 614

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             E+  +     Q         QG GLGL I++ ++   GG   + S+   G      LP
Sbjct: 615 ADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674

Query: 474 NT 475
             
Sbjct: 675 LA 676


>gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
 gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
          Length = 927

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 40/461 (8%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
           ++L      +V  +   +  +V              +W   TL        L   ++   
Sbjct: 211 LSLFFSIREKVYLLYVCWSAVVTLFMAVLHGYAHRYLWPHSTLISQYMIHYLLPLIVLLP 270

Query: 98  IK-----IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                  +          +  Q+ +G+  T+L L  P T     + I  SA LL+  SI 
Sbjct: 271 PLFTLHFLSLREKAPRLAMWLQMLVGIG-TVLFLAAPFTSRTFLIPISVSAILLMDFSIF 329

Query: 153 ALS---------NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            +          +  +    +  F     A++      +    ++   +          +
Sbjct: 330 FVGLIRTRAGDPDARIFTIAWSCFIVGAAAMALNKYGVVPRNSLTENLVQIGVFLEVVLL 389

Query: 204 TYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           +  L +   ++    ++  +D  IAE+E  K+ +          N AKS FLA+MSHE+R
Sbjct: 390 SLALARRINRLKEAHSDSVRDRAIAEMEAFKAGAR---------NHAKSEFLATMSHEIR 440

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N I+G ++++   +M         +Y+G I++S Q LL +IN+ILD S+IE+G+ EL
Sbjct: 441 TPMNGIMGMTDLLRRTSMTH----QQAQYVGTIYQSTQSLLTVINDILDYSKIESGKLEL 496

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
               I+L +IV +C+ +  LR+ EK++ ++  ID  +   +  D   ++Q+I NLLSNA 
Sbjct: 497 DYQPIALENIVDDCVRLFALRSSEKSLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAF 556

Query: 381 KFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           KFT   G V + V               I + D G G+ EG+  ++  +F    ++ K  
Sbjct: 557 KFTDR-GHVALHVNLKQPVNNKGMCVLMIEVVDTGIGLDEGQQSSLFQAFS--DLSAKGK 613

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             G GLGL I + ++   GG   + S L  G      LP  
Sbjct: 614 HNGAGLGLVICKRLIELLGGDIGVSSSLGRGATFWLSLPVE 654


>gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 680

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 14/270 (5%)

Query: 226 AELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +E   A+ + ++  R+ AE  N  K  FLA +SHELRTPL ++LG+S+++  + +     
Sbjct: 270 SEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKAT 329

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  I R+    + LI +ILD+SRI  G+  L+ S ++LI +V   +  ++  A 
Sbjct: 330 A---RALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVRPLAD 386

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399
            KN+ I   +D +LS V  D   ++Q++ NLL+NA+KFT   G+V + +   +G      
Sbjct: 387 TKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGELSDDL 446

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GIA   +P V   F Q       +  G+GLGL I + ++  H G  L 
Sbjct: 447 THAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNGTILA 506

Query: 459 RSK-LREGVEVIAILPN---TRVLNFIPED 484
            S  + +G       P     R     P +
Sbjct: 507 ESPGVGKGATFTVRFPLIQENRETRPTPTE 536


>gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 645

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 152/357 (42%), Gaps = 20/357 (5%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L   ++          A+ LS     +  + +AI   
Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMGALMFAFLLARSLALSLSRPISDMGEALKAIQQG 211

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +    TR+ A
Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIHTREEA 260

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--S 360
            +IN+ILD SRIE    ++     +L ++V          A ++N+ +   I P L   +
Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLEGMN 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEI 417
           V  D   +RQ+++NL+ NA+KFT  G   V V          + +  ++D+G GI    +
Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQGKVCVEVRWAMLDAERLHFTCAVQDSGIGIDAERL 436

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 437 ESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 493


>gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13]
 gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
 gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
          Length = 1036

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 770  LRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 829

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 830  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 889

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 890  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 949

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 950  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1009

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1010 AQFAIDSNPGQGTVVEIVFPPTRVL 1034


>gi|160934183|ref|ZP_02081570.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
 gi|156866856|gb|EDO60228.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
          Length = 1281

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 14/273 (5%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDE------TRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +L    +                +       +  A+  +LAK++FL+ MSHE+RTP+NAI
Sbjct: 864  VLESHEKNYLWTEAQRKTLQELTQIISTFVAKAHADAVSLAKTQFLSRMSHEIRTPMNAI 923

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
             G + + +       + E   + +  I RS Q+LL LIN+IL++SRIE+G+ E+S   + 
Sbjct: 924  AGMTTIAKTSL---DHREKVLDCLNKIERSNQYLLGLINDILEVSRIESGKIEISPEWVD 980

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            ++ + R+   M   +A+ KNI +  +         + D     Q+ +NL+ NA+KFT  G
Sbjct: 981  MVTVERQLNEMFASQAKAKNITLLFQRQYEEKYVFYLDTLRFNQIFINLIGNAIKFTRPG 1040

Query: 387  GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G V       S          SI+D G GIA   I  +  SF QGS        G GLGL
Sbjct: 1041 GTVIGRARLESFEKDIAYIRFSIEDTGIGIAPEAIERIFDSFEQGSAKTAQEYGGTGLGL 1100

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             I+  ++   GG+  ++S+L EG E    LP  
Sbjct: 1101 TISSHLVQLMGGKLEVKSRLGEGSEFYFTLPLK 1133


>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1382

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 132/355 (37%), Gaps = 9/355 (2%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L+         P                  AL+                +          
Sbjct: 221 LVEATGLAAGHPAAPATLSPGDPAAPWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPA 280

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRK 240
             L + L         F        +++         E     L   +  A+S   + R+
Sbjct: 281 EALLVPLRQQGGAPYGFLVAGLNR-YRALDDGYRGFVELTAGHLATGIASARSYQAQQRR 339

Query: 241 RAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             E  E + AK+ F +++SHE RTPL  I+G  + +     G   +E  +  +  I R+G
Sbjct: 340 AEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELRGRLQGA--DEQVRTELDVIRRNG 397

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L+N +LD SRIEAGR +     + L  +  +   + +   +   +       P  
Sbjct: 398 LRLGKLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGLSFEVDCPPLP 457

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D     +V+LNLLSNA+KFT   G + V +    G    + I D G G+   E+P
Sbjct: 458 EPVHLDRGMWEKVVLNLLSNALKFTFD-GTIRVEL-RADGDAAVLRISDTGIGVPADEMP 515

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   A   +++G G+GL + Q ++  HGG     S +  G      LP
Sbjct: 516 RLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFTIRLP 570


>gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 607

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK-EYIGDIHRSGQHL 301
           E+    +  F+A++SHELRTPL  +  + E ++    G +N+      ++       + +
Sbjct: 371 EKIEQERREFVANVSHELRTPLTTMKSYLEALDD---GAMNDPNLAPRFLHVTQNETERM 427

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           + L+N++L LS+I+   Y+L+ S + L   + + I   ++ A+EK+I   +KI    + V
Sbjct: 428 IRLVNDLLQLSKIDTHDYKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKITKHATFV 487

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D+  + QVI N+LSNA+K++  GG V +T+    G    +SI D G GI +     + 
Sbjct: 488 EIDQDKLTQVIDNILSNAMKYSPEGGDVTITL-LHQGHNVRVSISDQGMGIPKESQTKIF 546

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A   +  G GLGL IA+ ++  HGG+  + SK + G  +   LP
Sbjct: 547 DRFYRVDKARARSVGGTGLGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598


>gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 955

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 12/254 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 555 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNS--- 611

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  +EY+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 612 -EEQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 670

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +       +  V  D   + QV+ N ++NA+K+T  G    + +G+     
Sbjct: 671 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS---IEMGYEVMDT 727

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G  + +KD G GI E +   V   F +         QG GLGL I ++I  + GG     
Sbjct: 728 GIRLYVKDTGIGIPEEKKNKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFE 783

Query: 460 SKLREGVEVIAILP 473
           SK  EG    AI+P
Sbjct: 784 SKYHEGSLFWAIIP 797


>gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1023

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 12/254 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 623 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNS--- 679

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  +EY+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 680 -EEQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 738

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            R     + +       +  V  D   + QV+ N ++NA+K+T  G    + +G+     
Sbjct: 739 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS---IEMGYEVMDT 795

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G  + +KD G GI E +   V   F +         QG GLGL I ++I  + GG     
Sbjct: 796 GIRLYVKDTGIGIPEEKKNKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFE 851

Query: 460 SKLREGVEVIAILP 473
           SK  EG    AI+P
Sbjct: 852 SKYHEGSLFWAIIP 865


>gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 631

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 6/257 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E+    A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++ +  
Sbjct: 222 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 281

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +   +K  I  I RS +  ++LI+++LD+S I +G+  L    + L D++      
Sbjct: 282 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 338

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++  A++KNI I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + ++V     
Sbjct: 339 IEPMARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPE 397

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI    +P +   F Q  ++      G+GLGL IA+ ++  H G+   
Sbjct: 398 GVVA-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITA 456

Query: 459 RSK-LREGVEVIAILPN 474
            S     G  +   LP 
Sbjct: 457 ASSGADRGTTMAVSLPL 473


>gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 2099

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 197/490 (40%), Gaps = 29/490 (5%)

Query: 14   LLISPTGDHLGLEYPSKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNP 70
              +  T +    +   K +  R    L  +   +L     +  L  L+ A+ G  +  + 
Sbjct: 1179 DNLRLTTERNTEQDWLKTNLARFTNMLQGQRDLTLVGKLLLSELAPLVSAHQGVIYQVDA 1238

Query: 71   --IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
                P  SL+++       +   ++      +G+       +LV  +   +      +  
Sbjct: 1239 DEEQPFLSLLSVYAQGVEAAHPPRLDFGQGLVGQCASDARRILVTDLPENVVPISSGVFT 1298

Query: 129  PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                +   L ++    +   + +++   F      FL      + +   +I +    +  
Sbjct: 1299 TLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLDQLTTSIGIVLNSIEATMQTE-G 1357

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244
            L        +        L ++N ++     + ++   E+E      ++ R+  EE    
Sbjct: 1358 LLKQSQKLAAELQTQQRELQQTNEQLGQKAQQLEERNVEVEAKNQEIEQARRALEEKATE 1417

Query: 245  ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  KS FLA+MSHELRTPLN+IL   + +     G L+ +   E+   IH +G  L
Sbjct: 1418 LALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQV-EFAKTIHGAGTDL 1476

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
            LNLI++ILDLS+IE+G   +    I + +++       +  A+ +++    +I   ++  
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRSLSFAVEIGGDVTKS 1536

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407
            +  D K ++Q++ NLLSNA KFTA GG V + V   +                    + D
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVALAASGWSPDHPSLRHAPSVIAFEVVD 1595

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GI   +   +  +F Q   +      G GLGL I++ +    GG+  +RS    G  
Sbjct: 1596 TGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGVGST 1655

Query: 468  VIAILPNTRV 477
             +  LP T V
Sbjct: 1656 FVLYLPLTYV 1665


>gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 806

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 12/252 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R++ ++ N AKS FLA+MSHE+RTPLN I+G +E++    +  +     K+Y+  I+ S
Sbjct: 307 AREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKDYLATINSS 362

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q LL LIN+ILDLS+IE+G  E      ++ +++ +   ++  +AQ+KNI +   I   
Sbjct: 363 SQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIVLRIIIGDE 422

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIA 413
           + + + ADE+ +RQ+++NL SNA+KFT  G    ++ V            S+KD G GI 
Sbjct: 423 VPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSVKDTGVGID 482

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472
           + +   +   F Q          G GLGL IA  ++   GG+ +I S    G E   IL 
Sbjct: 483 KNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMISSDKGVGSEFHFILA 542

Query: 473 -PN--TRVLNFI 481
            P    RV   +
Sbjct: 543 FPKQEERVCERL 554


>gi|114570669|ref|YP_757349.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341131|gb|ABI66411.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 607

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/470 (21%), Positives = 175/470 (37%), Gaps = 27/470 (5%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLA 81
            +     +    D +       ++   +    + ++    +       P      L++ A
Sbjct: 5   RIDRWTGADPQIDFDYAVKSRIAVAYTAIFTLMGLVNAGVLAFVLDGRPGMAELGLVSAA 64

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
           + A    +G ++   ++ I       +  L   +     W       P   T     I  
Sbjct: 65  IAATVGIVGLRLRRPNLTII-----VMIALASLVLYAAAWANRGSFPPA--TLYLPGIVL 117

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
            A +      + ++   L     L       + +         L   L    + +  +  
Sbjct: 118 GAYIAWGARAAFIAILPLAAYFGLILGTADYSSTGPLGFRPTELLNMLVAAGSLSCVWIV 177

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                   +         E          A    +     A++ + AKS F+A+MSHE+R
Sbjct: 178 LFGSSFRSATTDAQKALTE----------ANQQLETALISAQQASRAKSDFIANMSHEVR 227

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG + V++         + ++  +G I  SG+ LL+L+N+ILDLS+IEA   EL
Sbjct: 228 TPLNGVLGMTNVLQ---ADATLTDEHRRSLGLIDDSGKALLDLLNDILDLSKIEADAVEL 284

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L  ++       +L+A+ K + +         + V  D   +RQVI NLL NAV
Sbjct: 285 ETRTFDLAALIHNTSEHWRLQAETKGVALTVSNQLGEPAFVTGDPIRLRQVINNLLGNAV 344

Query: 381 KFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           KFT   GR+ V++              ++++D G GI   +   +   F Q    +    
Sbjct: 345 KFTH-NGRISVSLAAVGEVRDGKTRVRLAVRDTGIGIPGNKQAAIFDPFSQVDATVTRRY 403

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            G GLGL I + +++   G+  + SK+  G      LP  RV    PE  
Sbjct: 404 GGTGLGLAICRRLVSKMDGKITLSSKMGRGSTFTVDLPLERVAASEPEAA 453


>gi|238922202|ref|YP_002935716.1| hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750]
 gi|238873874|gb|ACR73582.1| Hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750]
          Length = 734

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 14/312 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSR 251
               +     +    +K+       Q E     A+  +       E  +R E+ N AK+ 
Sbjct: 301 FVAYMFAVLVLNMMRWKTVQGYEREQYEMQQQYAKTLQEKNEQLQEAVRREEKANAAKTD 360

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FL+ M+H++RTPLN I+G   ++ ++     + +        +  +  HLL+LIN+IL +
Sbjct: 361 FLSRMTHDIRTPLNGIIG---LLRIDESHKEDTDMINTNRKKMSIAANHLLSLINDILQM 417

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS---LSSVWADEKGM 368
           S++E G+ ELS   + L  + ++ I +++ RA +  + +             V+     +
Sbjct: 418 SKLEDGQIELSREIVDLNKLAKDIITIVEQRASDSGVNLKYDKVAGKVMYPYVYGSPLHL 477

Query: 369 RQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSF 424
           RQ+ LN+ +N +K+   GG V        T          + D G G++E  +  +   F
Sbjct: 478 RQLFLNIYANCIKYNKAGGMVSTYFKCIGTQDGIVTYEWTVTDTGIGMSEEFLEHIFEPF 537

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFI 481
            Q     +S  QG GLG+ I +S++    G   + SK  EG   +  +P    ++V    
Sbjct: 538 VQEKTDARSVYQGTGLGMAIVKSLVDKMNGTISVTSKEGEGSTFVIRIPFEIASKVEEIT 597

Query: 482 PEDNHESTQYKC 493
            +    S     
Sbjct: 598 DDKEKSSNDISG 609


>gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 755

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E + +AE  +  KS FLA+MSHE+RTPLNAI+GFSE++        + +  K
Sbjct: 376 EKMAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDS----DDPDEKK 431

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY   I  +   LL LIN+ILDLS+IE+G  +      +L  +  E  +M++ +    ++
Sbjct: 432 EYWHIIESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIPNADV 491

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKD 407
           E+ Q        ++ D   ++QV +N L+NAVK+T  G   ++ +G+     G    ++D
Sbjct: 492 ELVQDNPCPECWIFLDSNRLKQVWMNFLTNAVKYTRSG---YIRMGYSVEKDGIRFYVED 548

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI +     V   F +         QG GLGL I+++I+   GG+    S+   G  
Sbjct: 549 TGTGIPKELQDRVFGRFQKL----NEFVQGTGLGLAISRAIVEAAGGEIGFTSEQGIGST 604

Query: 468 VIAILPNT 475
             A +P  
Sbjct: 605 FWAWVPCE 612


>gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 649

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 10/275 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           QAE + +    E     + + ++ AE  N  K  FLA++SHELRTPLNAI+G+ +++   
Sbjct: 251 QAELERIQLLHE-----ARQAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQLLRS- 304

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G LN + +   +  I R+      LI ++LD+SRI  G  +L    I++I ++   I 
Sbjct: 305 --GTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSSID 362

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            +   A+ KNI I  ++      +  D++ ++QV  NLL NAVKFT I G + +  G  +
Sbjct: 363 TVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGEEN 422

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            +  +I I D G GI+   +P +   F Q    +    + G+GLGL I + I+  HGG  
Sbjct: 423 NQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGGSV 482

Query: 457 LIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +  S+ + +G      LP  + +      +  ++Q
Sbjct: 483 MAESEGIDKGSTFTVELPVIQSVRNQETKSTSASQ 517


>gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 796

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 7/251 (2%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L   ++      +  R  A   N AKS F+A+MSHE+RTPLN ++G  + +    +    
Sbjct: 53  LGDMVKDRTRQLELARDEAMAANKAKSLFIANMSHEIRTPLNGVIGMLQAMMQGDL---- 108

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +   K        SG+ LL +IN++LD S++EA +  L     SL  ++  C  ++  +A
Sbjct: 109 SREQKARAKTALTSGKLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQA 168

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +K + +   +   L   +  D   ++Q+I NLLSNAVKFT   G V +       R   
Sbjct: 169 SDKGLTLTLTLAAHLPDQIMGDPTRLKQIICNLLSNAVKFTKR-GEVSLYCYPVEDR-LV 226

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI       +   F Q   +      G GLGL I+  ++   GG+  +RS+ 
Sbjct: 227 FGVADTGVGIPADRQQQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEP 286

Query: 463 REGVEVIAILP 473
             G +    LP
Sbjct: 287 GVGADFYFALP 297


>gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 576

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 LIDGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569


>gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1022

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    Y+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            R     +++      S+  V  D+  + QV+ N ++NA+K+T   G + +         
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI E +   V   F +         QG GLGL I ++I  + GG     S
Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851

Query: 461 KLREGVEVIAILP 473
           +   G    A+LP
Sbjct: 852 EYSRGSLFWAVLP 864


>gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1022

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    Y+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            R     +++      S+  V  D+  + QV+ N ++NA+K+T   G + +         
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI E +   V   F +         QG GLGL I ++I  + GG     S
Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851

Query: 461 KLREGVEVIAILP 473
           +   G    A+LP
Sbjct: 852 EYSRGSLFWAVLP 864


>gi|260778949|ref|ZP_05887841.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605113|gb|EEX31408.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 786

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 134/268 (50%), Gaps = 6/268 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+EL+          + AE+ N AKS FLA+MSHELRTP+N +LG +++I+ E+      
Sbjct: 242 ISELKRNNLAYQVATENAEKANEAKSIFLATMSHELRTPMNGVLGIAQIIKDESQELET- 300

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+    +  SGQHL+ ++N+ILD S++E G+ EL     S+ ++V      L  +A 
Sbjct: 301 ---KKQAQILIDSGQHLMTILNDILDFSKVEQGKLELEIHPFSIGELVLSLEKTLGPQAA 357

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            K ++   +   P+   +  D    RQ++ NL+ NA+KFT  G   V   +  +      
Sbjct: 358 NKGLKFVIQNKVPANIELHGDPARTRQILFNLVGNAIKFTQTGKIEVEFALDTSIPPNVC 417

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +S+ D+G GI   ++ T+ T F Q  ++      G GLGL I + ++   GG+  + S+ 
Sbjct: 418 MSVTDSGIGIEREKLDTIFTPFEQAELSTTRKFGGTGLGLSIVKRLVEMMGGKVSVFSQP 477

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G +    +P       I E   + + 
Sbjct: 478 NVGTQFTLTIPFELKELEISEAQLQPSD 505


>gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1022

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    Y+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            R     +++      S+  V  D+  + QV+ N ++NA+K+T   G + +         
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI E +   V   F +         QG GLGL I ++I  + GG     S
Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851

Query: 461 KLREGVEVIAILP 473
           +   G    A+LP
Sbjct: 852 EYSRGSLFWAVLP 864


>gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1022

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    Y+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            R     +++      S+  V  D+  + QV+ N ++NA+K+T   G + +         
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI E +   V   F +         QG GLGL I ++I  + GG     S
Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851

Query: 461 KLREGVEVIAILP 473
           +   G    A+LP
Sbjct: 852 EYSRGSLFWAVLP 864


>gi|189183162|ref|YP_001936947.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda]
 gi|189179933|dbj|BAG39713.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda]
          Length = 503

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 15/311 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             ++F  +    + Q +   ++    L  +L  +L FF  I   +               
Sbjct: 199 TVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIKSSISNVQ----------- 247

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +I     A    ++ R++AE+EN+AK++FLA++SHELRTPL+AI+G +E+I   +   +
Sbjct: 248 QIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIILSNSHCKI 307

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N   Y  YI DIH SG+HLL +IN+ILD S+  A +  +   A+ L  +    + ++  +
Sbjct: 308 N---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASSLRLMYTK 364

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401
           A++  I++  K  P    + AD K ++Q + NLLSN++KFT   G + + +         
Sbjct: 365 AKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISMNELKSLV 424

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           YI + D G GIAE +IP  L+SF Q +  + +  +G GLGLP+ + ++    G F I S 
Sbjct: 425 YIKVIDTGIGIAEHDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEGDFEITSN 484

Query: 462 LREGVEVIAIL 472
           + +G  V    
Sbjct: 485 IGQGTTVTITF 495


>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
          Length = 923

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 256 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 313

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 314 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPIRLWEAYRHAVGRSS 373

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 374 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 426

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 427 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 482

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 483 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 542

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 543 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 601

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 602 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 661

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 662 TVALPLREA 670


>gi|164657947|ref|XP_001730099.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
 gi|159103994|gb|EDP42885.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
          Length = 1333

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 10/262 (3%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            S + + + ++  L  +   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G + +  
Sbjct: 762  SLKTKINQMVYSLRDSIQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTSLTL 821

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +    + T +E +  +     +LL +I++ILD+S+IEAGR  + E   SL  IV   
Sbjct: 822  ETEL----SRTQRENLVTVSTLASNLLAIIDDILDISKIEAGRMNIEEIPFSLRGIVFSV 877

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L +RA +K + +  ++ P++   +  D   ++Q+I NL+ NAVKFT  GG V +   
Sbjct: 878  LKTLSVRAAQKKLNLVYEVAPNVPDPLIGDALRLKQIITNLIGNAVKFTESGGIVALRCK 937

Query: 395  WT-----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                             D+G GI + ++  +  +F Q   +      G GLGL I++ ++
Sbjct: 938  LNSAPGAPETVLEFCASDSGIGIKQDKLDMIFDTFCQADGSTTRKYGGTGLGLSISRRLV 997

Query: 450  ANHGGQFLIRSKLREGVEVIAI 471
               GG   +RS   +G +    
Sbjct: 998  NLMGGDMWVRSHFGKGSDFFFT 1019


>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 1121

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 22/365 (6%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-----------ISLAGM 192
             ++A   S + +++   A+  S    ++A+                         +  +
Sbjct: 555 AWVVAKLNSRVGHYLAIQAMLASVIGGILAIIYFHARFESPSHGEAIRGTLWTLYFVLMI 614

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +   +++   +     +   +    Q       I   +   +   + ++ AE  NLAKSR
Sbjct: 615 IVGVVAWLFVLAQESRRVAQEESQRQTTLLMREIEAHKRTDAKLQKAKEVAEAANLAKSR 674

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           ++  +SHELRTPLNAILG+++++E +T  P      ++ I  + RS +HL  LI+ +LD+
Sbjct: 675 YVVGISHELRTPLNAILGYAQLLERDTSIP---AHRRDAIRVVRRSSEHLSGLIDGLLDI 731

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAGR  L    + + D++ + + M +L+A  + IE        L   V+ DEK +RQ
Sbjct: 732 SKIEAGRLHLYRDEVRIRDLLDQLVDMFRLQASARGIEFIHMRSERLPAVVFTDEKRLRQ 791

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +++NLLSNA+KFTA  G V + V +   +     ++D G GIA  E   +   F +GS  
Sbjct: 792 ILINLLSNAIKFTAK-GHVALRVTYR-NQVAEFEVEDTGIGIAPEERGRIFEPFERGSRG 849

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
                 G+GLGL I + +    GG+  ++S+L +G      L    +L+  P       +
Sbjct: 850 GAFNAIGIGLGLTITKLLTEIMGGEISLKSELDKGSTFKVRL----LLSEAPGREAAPPE 905

Query: 491 YKCYA 495
            +  A
Sbjct: 906 QRIVA 910


>gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
 gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
          Length = 774

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 162/341 (47%), Gaps = 15/341 (4%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               L      +   +V   +T +       +    G +   L  F  +   LF +   +
Sbjct: 161 VAATLEEIRIATNEFLVRTNATISEARADARNDVFQGQMLAFLFMFAIVVAALFLAFHML 220

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L  +  K         A +  ++  + AE  N AKS FLA++ HE+RTPLN ILG +E++
Sbjct: 221 LQVRIVKQTREGMTRAA-AEFEKAYEAAEAGNKAKSAFLATIGHEIRTPLNGILGMAELL 279

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             + +    +     Y+  I RSG+ LL +INEILD ++IE G  +  E    L D+VR+
Sbjct: 280 AQKPLPAEESG----YVRTITRSGRALLEMINEILDYAKIEYGSQQSEEIIFRLDDLVRD 335

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHV 391
              +++ +  E+N ++   IDP+L  + + +D   +++++LNLLSNAVKFT  G   + V
Sbjct: 336 TAAVVEGQVLEQNNDLKLHIDPALDGAFIKSDPTRLKRILLNLLSNAVKFTENGSVWLEV 395

Query: 392 TVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           T G  +       +S++D+G GIA      + T+F Q   +I     G GLGL I + I+
Sbjct: 396 TAGNVTDETLELNVSVRDSGIGIASDAQKQLFTAFHQVDSSISRRFGGTGLGLAICKQIV 455

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRV-----LNFIPEDN 485
               G   + S   EG      +P  R      +   PE++
Sbjct: 456 EAMQGTIGVSSTPGEGATFSFTVPVQRAKAPACIPGAPEED 496


>gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 880

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 16/247 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+ F+ +MSHELRTP+ AI GF++++ +  +G L N+T +E++  I+ + + ++N
Sbjct: 631 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYNNTERMIN 689

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++L++++IE+G  EL   ++ L + +   I  LQ    ++  ++   I P L  + A
Sbjct: 690 LINDVLEITKIESGSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIPPGLPLIRA 749

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------------TSGRGQYISIKDN 408
           D   + Q++ ++L NAVK+T  GG++ +                   T+ R   +SI D 
Sbjct: 750 DAMRLHQILYHVLLNAVKYTPAGGKITIAAREILNVDFPEPVRSILHTNHRYLLLSISDT 809

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++P +   F +    +K    G GLGL I + ++   GG   + S + +G   
Sbjct: 810 GVGIRPEDLPRIFDRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVGQGSTF 869

Query: 469 IAILPNT 475
              LP  
Sbjct: 870 YIALPVA 876


>gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1160

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 182/420 (43%), Gaps = 25/420 (5%)

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
                + T  + +   +L  +  ++          +I  +              L    +
Sbjct: 556 IAFCPVYTGFICSLCCTLDSRCHDACKPETTRLTGQIKKVAYSFLPRS------LAFHIS 609

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                  +  SA L  A  I       +     +S + + +       +    L +    
Sbjct: 610 GVIGRYFLIFSALLFCAGIILYALYQNIVKFPHISSYQLSIIFWKTFFLLSAPLTV---- 665

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKS 250
                +++F  ++   +++       Q       I   +       + ++RAE  NL+KS
Sbjct: 666 -----IAWFLVLSQRSYRAAENENRFQTRLLMKEIRAHKRTDQELKKAKERAEAANLSKS 720

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RF+  +SHE+RTPLN+I+G++ ++E + + P   E   E +  I RS +HL  LI  + D
Sbjct: 721 RFMVGVSHEIRTPLNSIMGYAYLLENKMLAP---EKQNEGLKVIQRSAEHLSGLIEGLFD 777

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           +S+IEAGR ++    I+  + ++    ML+ +   K +   + I  +L   V  D++ +R
Sbjct: 778 ISKIEAGRLDILHDKINFQEFLKHLTGMLRFQVNNKKLVFIEDIPENLPEYVMTDQRRLR 837

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA+KFT   G V  +V W         I+D G GI + +I  +   F + S 
Sbjct: 838 QILINLLSNAIKFTPS-GSVSFSVRWNME-IATFEIRDTGIGIPDSDIERIQEPFQRSSH 895

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
                 QG GLGL I + ++   GG+F I+S + +G      L  ++  +   ++N  ST
Sbjct: 896 PDSHRIQGTGLGLTITRLLVQILGGEFTIKSTVGQGTTCRVRLMLSQTES---KENPPST 952


>gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
 gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
          Length = 675

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 162/439 (36%), Gaps = 22/439 (5%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +   +    L  L ++ +        +        L           +         E  
Sbjct: 94  VCYAALFAGLVALQISPLAQPLLPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153

Query: 105 VWRIWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
                  +         +L  +               L  ++     +       +   L
Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213

Query: 160 P---YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                 V  +  P  V  + +   +  V+   +   L         +T  +         
Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDIT----- 268

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E     A            R+ AE  +  K  FLA++SHELRTPLNA+LG+++++  
Sbjct: 269 ---EHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA- 324

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             M P +   ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++    
Sbjct: 325 --MRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             ++  A++K I I  +  P +  +  D   ++QV  NLL+NAVKFT  GG + V V   
Sbjct: 383 ETIEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQAL 441

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G+ 
Sbjct: 442 PEGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500

Query: 457 LIRSK-LREGVEVIAILPN 474
              S     G  +   LP 
Sbjct: 501 TAASNGANLGTTMAVTLPL 519


>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
          Length = 2370

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 18/324 (5%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                +   + L     +       +   + + +    +    +   +A+   A+  + E 
Sbjct: 1811 FTERNTQVLRLLVNQISISLANALLFKEVERVSASNEAMLEMQKRALAQARAAEIKAKEA 1870

Query: 239  RKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               A       EE   AKS FLA++SHELRTPLN ++G SE+++   +    N     Y 
Sbjct: 1871 EANAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQSGYA 1926

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I      LL++IN++LD S++EAG+  + E  ISL + + E +  L     E+ ++  
Sbjct: 1927 DSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTI 1986

Query: 352  QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
            ++++      V  D   + Q+++NLLSN+ KFT   G V V                S+ 
Sbjct: 1987 EQLELDPEMLVMGDPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDQETSEWADVTCSVI 2045

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREG 465
            D G GI + +   +   F Q   +   +  G GLGL I ++++ N   G   + S+  +G
Sbjct: 2046 DTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKG 2105

Query: 466  VEVIAILPNTRVLNFIPEDNHEST 489
              V   L   +V      D  + +
Sbjct: 2106 TTVTFSLRFKKVPKARAGDQQQRS 2129


>gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 1158

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 162/357 (45%), Gaps = 5/357 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
            ++ L       P  +      +  + ++I A  +      +      +   L  Q   +
Sbjct: 360 GVIELGFMRKPEPLDMEFLSLISGNLGIAIEAALSRQRLQDLLAETQQLNEELQVQQEEL 419

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            + +      + +L  + +        L ++N K+       D+  A L+  ++   E  
Sbjct: 420 RTSNEELEEQSRILEESQATLENQKAELEQTNDKLAEQALRLDERNAALQEVQAQLRERA 479

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  E  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K +   I+ +G 
Sbjct: 480 EDLERASQYKSEFLANMSHELRTPLNSSLILAKLLADNREGNLSEEQVK-FAQTIYSAGN 538

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LLNLIN+ILD+S++EAG+ EL    +++  +      + +  AQ+K ++    I P   
Sbjct: 539 DLLNLINDILDISKVEAGKLELKPQELAVQHLANSLQAVFEPLAQQKKLDFSIDISPQTP 598

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +++ D + + Q++ NLLSNA+KFT   G + + +   +      ++KD+G GI      
Sbjct: 599 DTIYTDRQRLEQILKNLLSNAIKFTDK-GSISLHISNNAHDQISFTVKDSGIGIDPSMHE 657

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F Q          G GLGL I++++ A  GG   + S   EG     ++P  
Sbjct: 658 AIFAPFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSINVESARGEGSSFTLLVPRQ 714


>gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 14/250 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   ++++ A+  N AKS FLA+MSHELRTPLN ILG +++++  +  P   E  + +I
Sbjct: 324 QAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSKLP---EQEQHHI 380

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I + G HLL LIN+ILDL++IEA + EL    +     ++    + Q+RA +K+I   
Sbjct: 381 NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFI 440

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQY 402
            +   +L   V  D K +RQV+LNLL NA+KFT   G+V + V                 
Sbjct: 441 YEPASNLPTWVHIDAKRLRQVLLNLLGNAIKFT-DHGQVKLKVETIEESSNQKPVNHRIR 499

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I+D G GI + E+  +   F Q     K   +G GLGL I + ++   G    + S++
Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEK-KRQTEGTGLGLAITRQLVQMMGSDIHVTSQV 558

Query: 463 REGVEVIAIL 472
            +G      L
Sbjct: 559 GKGSTFWFEL 568


>gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
 gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
          Length = 2331

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E    +++ E +      E+  
Sbjct: 1760 IGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1819

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+N ++G +E+++   +    +     Y+  I      LL LIN
Sbjct: 1820 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTNL----DREQNGYVESIRVCADTLLTLIN 1875

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ +++   ++L D + E +  L    + + ++  + +D    +  V  D
Sbjct: 1876 DILDFSKLEAGKMKVAAIPLNLRDTIMEAVRALCFTHRHRGLQTIEDLDELDPNLLVMGD 1935

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V    +      I I     D G GI   ++  +
Sbjct: 1936 PVRLHQIFMNLLSNSYKFTPQ-GSVTVKANASDEEDGRIRITCKVVDTGIGIPGEQLVRL 1994

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472
               F Q   +   +  G GLGL I ++I+    GG+  ++S+   G  V   L
Sbjct: 1995 FRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2047


>gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 641

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 168/371 (45%), Gaps = 15/371 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY-----AVFLSFFPVVVALSTQAIMS 181
           +  G  +       +S+   + L+IS+LS  + P      A+F     +++A     ++ 
Sbjct: 265 LVAGYSSLPSPVTGESSQKWVVLAISSLSQALAPLQQIWEAIFYLISGLLLAYLVAIVLI 324

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDET 238
              L   L  +   AL+     +  +   N  I         L   LE  +       ++
Sbjct: 325 ARDLARPLEKLRDYALNIQKIPSQKIRPQNFNIREINQLASSLEEMLERLRLWGEEIVKS 384

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE  +  K++FLA+ SHELRTPLN I+G    +        + E  KEY+    ++ 
Sbjct: 385 RQEAENASQLKNQFLANTSHELRTPLNGIIGSIRCVMDGFC--NSEEEEKEYLQQADKAA 442

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            HLL +I++IL +++IEAG+  +    + L  I+ E + +     Q K++++     P  
Sbjct: 443 VHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQIINEVVSLQTASLQGKHLKLNLLFCPEN 502

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V+AD   ++QVILN++SN++KFT   G + +       +   I+I D G GI   +  
Sbjct: 503 PIVYADPTKLKQVILNVISNSIKFTET-GTISLITHLEYPQ-AIITIVDTGIGIDPQQQL 560

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN--T 475
            +   F     +      G GLGL I+++ M   GG   I S+    G  V  ILP    
Sbjct: 561 KLFRPFVMIDGSTTRKFSGTGLGLAISKNFMKVMGGDITISSQGQGLGTTVEIILPLVGE 620

Query: 476 RVLNFIPEDNH 486
           + L+  PE+N 
Sbjct: 621 KKLDSTPEENS 631


>gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1165

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 3/289 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L  + +        L ++NV++       +   AEL  A+        R E+ +  KS F
Sbjct: 432 LVESQARLEAQQAELEQTNVQLEDYAKRLERQKAELLSAQGELAANAARLEQSSRYKSEF 491

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  + +++    G L +E  + Y   IH S   LL LIN+ILDLS
Sbjct: 492 LANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR-YAETIHASNSDLLVLINDILDLS 550

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +++  +++    M +  A  K+++   +  P +   ++ D + + Q+
Sbjct: 551 KVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQFSVERAPGVPDMIFTDGQRITQI 610

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNA+KFT   G V +TV  +        ++D G GIA  ++  +  +F Q   + 
Sbjct: 611 LRNLLSNALKFTER-GEVALTVAASDADTLRFDVRDTGIGIAADKLELIFEAFQQADGST 669

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                G GLGL I++      GG+  + S+  +G      LP    +  
Sbjct: 670 SRNYGGSGLGLSISREFARLLGGRVSVASEPGKGSVFTLWLPLQGSVEA 718


>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 3/235 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F+A++SHELRTPL  I  + E +    +     E  + ++       + ++
Sbjct: 370 QRLEQQRREFVANVSHELRTPLTTIKSYVEALLDGAV--EEPELSQRFLKVTSSETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR ++    L      L  ++        + ++++ +++   +   L  V+
Sbjct: 428 RLVNDLLQLSRFDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVY 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421
            D   + QV+ NLLSNA+K+T  GG V +       + +  ISI D G GI   ++  + 
Sbjct: 488 IDLDAINQVLDNLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             F +   A    + G GLGL IA+ ++  HG    I S+   G  V   +P  +
Sbjct: 548 ERFYRVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEWNVGTTVTFWVPFAQ 602


>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 957

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 129/276 (46%), Gaps = 9/276 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              I     +  V + +  +E       L    +   + R  AE  N AKS FLA+MSHE
Sbjct: 239 IPVIRDGRLRGVVAMGTDISEIKRDEIRLRQLNTELAQARDHAEAANRAKSTFLANMSHE 298

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G ++++      P   E     +  +  +  HLL +IN++LDLS+IE+G+ 
Sbjct: 299 IRTPMNAIIGLTQLLRRTHRDPAGAEQ----LAKVADAADHLLQIINDVLDLSKIESGKV 354

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL    I L +++   + ++  RA EK +E+    D    ++  D   + Q +LNLL+NA
Sbjct: 355 ELESIDIDLDELLSRTLSLVSSRAHEKGLELVLDTDHLPRTLRGDPTRLSQALLNLLTNA 414

Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT   G V +                S++D G G+   ++  +  +F QG  +     
Sbjct: 415 IKFT-DHGSVILRGQKLQDGADGVHVRFSVQDTGIGVEADQVEALFLAFEQGDSSTTRRH 473

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            G GLGL I + +    GG+    S   +G      
Sbjct: 474 GGTGLGLAITRHLAQLMGGESGADSVAGQGSTFWFT 509



 Score = 39.1 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 107 RIWLLVGQ---IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPY 161
           +          +A+ + W+    ++P  W   Y  I+ +A L   I   ++   + +L +
Sbjct: 5   KRRFAAPLTPLVALAIQWSFWPWLQPFAWFLFYPAIFFAARLGGRIGAWLATALSVVLVW 64

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            VF+   P V   S      +  L   L G     L             +      Q  +
Sbjct: 65  TVFIGPSPGVGNPSAVFSTIVFALMGILFGEAQEQLMRALRKDRQALDGSQA--ELQRHR 122

Query: 222 DDLIAELEVAKSLSD---ETRKRAEEENLA 248
           D L   ++   +  +   + R  AE    A
Sbjct: 123 DHLQELVDARTAELEKAMQARGDAEAFVRA 152


>gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 330

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 13/246 (5%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  KS+FLA+MSHE+RTPLN I+  +E+     +    +   +EY+  +  S +HLL 
Sbjct: 1   QADKMKSQFLANMSHEIRTPLNGIINCTEL----CLDTRTSPEQQEYLDLVRFSAKHLLR 56

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           +I +ILD S+IEAG+ E+ +   SL D +   + +L  RA +K +E+  ++D ++   + 
Sbjct: 57  IITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQII 116

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            D   + QV +NL+ N++KFTA G  +    V            S++D G GI + +   
Sbjct: 117 GDPGRLFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSL 176

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNT 475
           +  +F Q   +      G GLGL I+  + A  GG   + S+  +G          +P  
Sbjct: 177 LFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWVESE-GKGSTFSFTANFHIPPA 235

Query: 476 RVLNFI 481
             L   
Sbjct: 236 CDLPSS 241


>gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
 gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
          Length = 1035

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/265 (37%), Positives = 156/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA+GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+  +    E R  AE+    +SRFLA+MSHELRTP++ + G  E++++  +    N
Sbjct: 804  ITALKHQEHDLREARAYAEQAMQVRSRFLATMSHELRTPISGMHGMLELLQMSEL----N 859

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  +  + ++  S  +LL L+N++LD S+IEAG+ +L      L  ++ + I      A 
Sbjct: 860  DDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQLQLHYQDCRLASVICDVIRGHATLAH 919

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             K +++  +  P +      D   + QV+ NLL+NAVKFT   G + + V +   R   I
Sbjct: 920  GKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLNNAVKFTER-GEIRIQVSFEKERLA-I 977

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++ D G GIAE +   + T F Q    I     G GLGL I   +    GG  ++ SK  
Sbjct: 978  AVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGGTGLGLAICHQLAQKMGGTLVLESKPG 1037

Query: 464  EGVEVIAILPNTRVLNFIP 482
             G  +    P        P
Sbjct: 1038 HGTRLTFDFPLAECQWDAP 1056


>gi|288962184|ref|YP_003452479.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914450|dbj|BAI75935.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 882

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 149/271 (54%), Gaps = 1/271 (0%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +  +  + + E   L   L+ A+ +++  R+ AE  N AK  FLA +SHELRTPLNA+
Sbjct: 320 RNTVERTSAERDESARLATALDHARDMAETARQAAEAANHAKGEFLAGLSHELRTPLNAV 379

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GF+++I  E  GP+   +Y++Y  ++  SGQH+L LINEILD +R EAG   + E    
Sbjct: 380 IGFADLIAREAEGPVGTPSYRQYAANVRDSGQHVLELINEILDHARAEAGALTIEEGRCD 439

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       + ML  RA+   + +   + P+   +  D++ +RQ++LNL+ N VK+T  GG
Sbjct: 440 LEAAADFAVRMLTPRAERAGVLLTAAVMPAARMLRGDDRRIRQILLNLIGNGVKYTPSGG 499

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V ++V         I + D G GI  G++  VL  F +   A   A +G GLGLP+ + 
Sbjct: 500 SVTLSV-LLEEGVPVIRVTDTGLGIPAGDVDRVLEPFARVESAANRAVEGAGLGLPLTRR 558

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           ++  HGG   +RS L  G  V   LP  R+L
Sbjct: 559 LVELHGGVLTLRSTLGVGTTVTVRLPAGRLL 589


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTP+  I G++E +    +   +      ++G I      L +L
Sbjct: 355 ADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDL-ADDPGRRDRFLGIIQNHADRLSDL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS +E+G   +    + + D VR+ +++L  RA+EK I +      +  S  AD
Sbjct: 414 VRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMEL-GSCAPVSAMAD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NLL NA+K++  GGR+ V      G    +S++DNG GI E ++P +   F
Sbjct: 473 RGRLDQVLINLLENAIKYSGQGGRIQVEAA-EEGEMVRVSVRDNGIGIPEKDLPRLFERF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   A      G GLGL I + I+  HGG   + S + +G      LP  
Sbjct: 532 YRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLPRA 582


>gi|218282519|ref|ZP_03488769.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989]
 gi|218216506|gb|EEC90044.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989]
          Length = 950

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 155/292 (53%), Gaps = 7/292 (2%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            I++    A   +F++++  HL    V   S       L+ +   A++ +    K AE+ 
Sbjct: 506 AIAMYDSTAYKTTFYSFLKDHLVVVLVLGFSVIIVILLLLQKARRAEASAKVALKSAEDA 565

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +LAK++FL ++SH++RTP+NAILG+SE+++ E +   +     E++  + ++G  LL++I
Sbjct: 566 SLAKTQFLHNVSHDIRTPMNAILGYSELMKNE-LKDNDLPKVFEHLNKLQKAGNILLSII 624

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N +LD++RIE+G  EL E+  ++ DI +  I M +  A++KNI +    +     V AD 
Sbjct: 625 NNVLDMARIESGHMELDENYANIEDIRQRLIEMFEDEAKKKNIHVRYTFNVEHKHVMADV 684

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTV 420
             + ++ +N+LSNA+K+T   G V V V   S           SI D G G+++  +  +
Sbjct: 685 TKVEEIFVNILSNALKYTPSNGSVEVNVDELSCDEPGYMIVRTSIMDTGIGMSQEYLEKI 744

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             SF +    I S   G GLG+ I +  +   GG   ++S L +G   I  L
Sbjct: 745 FESFSR-ERMISSKISGTGLGMAIVKKYVDLLGGTIDVKSVLGKGSTFIVTL 795


>gi|294634067|ref|ZP_06712622.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292829881|gb|EFF88235.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1168

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/410 (23%), Positives = 171/410 (41%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +       +G+    R  + V ++  G       L +        L I     +L  + +
Sbjct: 725  RFSFGRSLVGQAARSRRTITVDELPAGYVTISSGLGQAVPSALVLLPILFEDQVLGVIEL 784

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITY 205
            +++++F   +  FL      + ++   I++    D  L         L    +       
Sbjct: 785  ASVTSFTPIHRDFLEQLRETLGVNVNTIVANARTDELLDESQRLTAELQARSAELQAQQE 844

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++    +       ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 845  ELQRSNAELEDKASLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 904

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 905  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 963

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +++   + L  ++       +    +K +E   +      + ++ D+  +RQ++ NLLS
Sbjct: 964  MDVTPERVPLSRLIEYVEATFRPMTTQKGLEFAVETATGAPADLFTDDSRLRQILRNLLS 1023

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT   GRV +++   +                  +KD G GI +  + ++  +F Q
Sbjct: 1024 NAVKFTEQ-GRVELSIEPAADEEVPAGVVRGGAVVAFRVKDTGIGIPQQHLESIFGAFQQ 1082

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG  ++ S    G      LP  R
Sbjct: 1083 ADGTTSRKYGGTGLGLSITREIAHLLGGAVVVDSAPGRGSTFTLFLPVAR 1132


>gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 11/325 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                 F      L+T  +       I+ A + A  +  F  +T+H    ++        
Sbjct: 62  RVAMHPFAHEGQHLATVVVGPYAPDAIAGAEIAAHLVGMFGILTHHAHARHLTSTMHSEA 121

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +   AEL       ++  +  +E +  KS FLA++SHELRTPL +++G++E++     G
Sbjct: 122 MEHNYAELTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEMLFEGLAG 181

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           PL N+  ++Y+  I      LL LI  +L+ S +E+G   +    + +  I+   +  L 
Sbjct: 182 PL-NKEQRDYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIERVLSSLG 240

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
            +A+ + IE+   I   L  +  D + MRQV+  L++NAVKFT    R+ + V       
Sbjct: 241 PQARARTIEVR-PIPADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEVRVAPLSR 299

Query: 397 -----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                   G  + + D G GI   +  ++   F Q   +      G GLGL +A+S +  
Sbjct: 300 YADEGDTPGVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTLAKSYIEA 359

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
           +GG   + S   EG      +P   
Sbjct: 360 NGGHIWVESAPGEGASFTFTVPAEP 384


>gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 575

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 120/236 (50%), Gaps = 4/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +S F+A++SHEL+TPL +I GF E ++   +   + +   +++  I    + L+ L
Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L LS IE     + E  + + ++V E I +L+++A++KNI++  K+   L  +   
Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGL-EMNIY 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+ +NL+ NA+ +    G+V VTV         I +KD G GI   E+  +   F
Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKL-DNLIVIKVKDTGIGIPGREVERIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +          G GLGL I + I+  +GG+  + S+   G E    +P  +  + 
Sbjct: 518 YRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573


>gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 869

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 8/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++I  I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      QL   
Sbjct: 681 EEIGQFIATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + +  D     +  D   ++QV+ NL++NA KFT   G +              I
Sbjct: 741 PRVELLLRMPDNEKKYLVTDNVRLQQVVNNLINNAAKFT-TYGSITFGYEEDEDPEYTRI 799

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S++ 
Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLRGTIFVTSEVG 855

Query: 464 EGVEVIAILP 473
            G      +P
Sbjct: 856 RGTRFTVRIP 865


>gi|150866454|ref|XP_001386063.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
 gi|149387710|gb|ABN68034.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
          Length = 1118

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 21/321 (6%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224
               V+        +     ++A  L + +  F  IT      +      +    E D L
Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459

Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             ++        E        R+ AE  N AKS FLA+MSHE+RTPLN I+G +++    
Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   + 
Sbjct: 516 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 575

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---- 392
            L ++A EK++++  + D S    +  D   +RQVILNL  NA+KFT  G          
Sbjct: 576 TLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKKSS 635

Query: 393 --VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                +      + + D G GI + ++  +  +F Q   +      G GLGL I++ ++ 
Sbjct: 636 KFTDDSEKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIH 695

Query: 451 NHGGQFLIRSKLREGVEVIAI 471
             GG+  + S+   G      
Sbjct: 696 LMGGEIWVTSEYGSGSNFYFT 716


>gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 869

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 8/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++I  I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      QL   
Sbjct: 681 EEIGQFIATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMP 740

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + +  D     +  D   ++QV+ NL++NA KFT   G +              I
Sbjct: 741 PRVELLLRMPDNEKKYLVTDNVRLQQVVNNLINNAAKFT-TYGSITFGYEEDEDPEYTRI 799

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S++ 
Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLRGTIFVTSEVG 855

Query: 464 EGVEVIAILP 473
            G      +P
Sbjct: 856 RGTRFTVRIP 865


>gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
 gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
          Length = 877

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 23/292 (7%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL-----------AKSRFL 253
           + L    +  L+   E + LI  L+         RK AE  +            AKS FL
Sbjct: 202 WMLLSGQIIALTVTGEIERLIGTLQDITR-----RKEAELISRDAANAARAANEAKSAFL 256

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+N ILG +++     +    N   +EY+  +  S Q LL++I++ILD S+
Sbjct: 257 ANMSHEIRTPMNGILGMTQLCLDTEL----NGEQREYLSLVMSSAQSLLHIIDDILDFSK 312

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVI 372
           IEAG+  L E  ++L   ++  +  L   A EK IE+  ++D  +  +   D   +RQV+
Sbjct: 313 IEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPEMMRVDVVRLRQVL 372

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            NLLSNA+KFT   G + + V   +        ++D+G GI   +   +  +F Q   + 
Sbjct: 373 TNLLSNALKFTPQ-GEILLAVAPAAQDGEWRFRVRDSGIGIPPEKQQVIFEAFSQADTST 431

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
                G GLGL I+  ++A  GGQ  + S+  +G E    LP        PE
Sbjct: 432 TRRYGGTGLGLTISARLVAMMGGQLTVASEANQGSEFSFTLPLHSAEQATPE 483


>gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 467

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 163/342 (47%), Gaps = 20/342 (5%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +L     S+ ++++L  A+  S     + L   AI    ++ I  +   A +  F   IT
Sbjct: 127 MLYVAICSSRADYILRMAIPYSGMKEYLMLLLPAIWLSFLMAIMYSAFSADS--FSKSIT 184

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----------EVAKSLSDETRKRAEEENLAKS---R 251
             L + + ++L    +  DL  E           E    +S   ++   +  L K     
Sbjct: 185 RPLKEISQEMLKVNGDYTDLSFETYQYPEINIIAETTTEMSKNVKEYLNQIELEKQIRQE 244

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F ++ SHEL+TP+ ++ G++E++E   +   + E   ++I  I +   ++ +LIN+IL +
Sbjct: 245 FFSNASHELKTPITSVQGYAELLESGII--QDEEQKMDFIRRIKKEAVNMNHLINDILMI 302

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           SR+EA   E+ ++ + L  ++ + +  L+  A    + I     P    ++A+ + M+++
Sbjct: 303 SRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHVDCKP--LCIYANGQQMKEL 360

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
             NL+SNA+K+   GG+V VTV     R   I +KDNG GI +  +  +   F +     
Sbjct: 361 FGNLISNAIKYNKPGGQVWVTVT-EENRNVIIRVKDNGMGIPKESLGRIFERFYRVDKGR 419

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              + G GLGL I + I+  + G   +RS+L  G E +  +P
Sbjct: 420 SKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIP 461


>gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1047

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +     +D   ++AE  N AK  FL ++SHE+RTP+N IL   E+IE   +    N+T +
Sbjct: 154 KKKLIEADLALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENTVL----NDTQR 209

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  I  SG +LL+LI +ILD S+IEAG+ EL +   ++I ++ E + ++   AQE+++
Sbjct: 210 DFLSCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDL 269

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399
           EI   ++ S+   V  D   ++QV+LN LSNA+KFT   G V V V              
Sbjct: 270 EILLTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPK-GHVIVRVKLDKSNPNQDSSSL 328

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++D+G GI E ++ ++ T+F Q     +   QG GLGL I++ +    GG+ 
Sbjct: 329 VDYTVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEI 388

Query: 457 LIRSKLREGVEVIAI 471
            +RSK   G      
Sbjct: 389 TVRSKFGNGSTFAFT 403


>gi|311696550|gb|ADP99423.1| integral membrane sensor hybrid histidine kinase [marine bacterium
           HP15]
          Length = 1127

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 194/437 (44%), Gaps = 25/437 (5%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
           I     L++A +  W T    +     + +A     +       + + +           
Sbjct: 462 IAMGVALIMAPLIAWKTGGRFYTARPFVPIATDHQLVQCTICEHHFEPEDLTHCPAYDG- 520

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFL--- 165
            +  +   L        +PG    E L  +  + +   +   + +     L   V +   
Sbjct: 521 TICSLCCSLDARCADACKPGAGYQEQLNQFLGSLMPKPVLAGLRSRLGHFLSLLVLINGL 580

Query: 166 --------SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
                    F   V + +   ++S+ +  +    ++ T +  + ++  H  +  V     
Sbjct: 581 SGLLLSLIYFKTPVASPAEGLLLSVTLWKVFFILVIVTGVICWLFVLAHESRV-VAEEES 639

Query: 218 QAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +   L+ E    E       + +++AE  N AKSR+L  +SHELR+PLNAILG+++++
Sbjct: 640 RRQNRLLMEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLM 699

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E +   P +    KE +G I RSG++L +LI  +LD+S+IEAGR +L    + +  ++ +
Sbjct: 700 ENDETIPSH---RKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQ 756

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            + M +L+A++K +         L   V  DEK +RQ+++NLLSNA+K+T  GG V +T+
Sbjct: 757 LVTMFRLQAEDKGLAFDYHCPNPLPEMVTTDEKRLRQILINLLSNAIKYTDRGG-VSLTL 815

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            +   +    +++D G GIA   +  +   F +     +S   G GLGL I + +    G
Sbjct: 816 RYR-SQVAEFTVRDTGEGIAPENVERIFRPFERIRTPGQSRA-GTGLGLTITRLLTEIMG 873

Query: 454 GQFLIRSKLREGVEVIA 470
           G   + S   +G     
Sbjct: 874 GDISLESVPGQGSVFRV 890


>gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
 gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
          Length = 1586

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    +    AE+   AKS FLA+ SHE+RTPLNAILG + ++  E++     E+    +
Sbjct: 825  EQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG+ LL ++N++LDLS+IEA    L    + L + + E   +   +A+ KN++  
Sbjct: 881  DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFK 940

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402
             +I   L   V AD   +RQ++ NLLSNA+KFT++ G + +                   
Sbjct: 941  LEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRAEIIDKFIWKGAEKNIVR 999

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             SI D G GI+E     +   F Q   +      G GLGL I   ++    G+  + S+ 
Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESRE 1059

Query: 463  REGVEVIAILPNTRVLNF 480
             +G      +P   + + 
Sbjct: 1060 GQGSTFWTDMPLQTLSDE 1077


>gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
 gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
          Length = 620

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 11/241 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++       + ++ +IN+
Sbjct: 377 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 434

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--------EKNIEIFQKIDPSLS 359
           +L LSR++ G  ++    ++  D +   +    +  +        +K   I +KI     
Sbjct: 435 LLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDL 494

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  D   M QVI N+++NA+K++  GG + V +  +  +   +SI D G GI + ++  
Sbjct: 495 WVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQ-IILSISDQGLGIPKKDLNK 553

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A    + G GLGL IA+ I+  H G+    S+  +G      LP   +  
Sbjct: 554 IFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFEPMSE 613

Query: 480 F 480
            
Sbjct: 614 E 614


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 164/384 (42%), Gaps = 35/384 (9%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L E        L +     +L  + +++   F      FL+    ++A S   I     
Sbjct: 1220 GLGEASPAYVIVLPVLFEGKVLGVIELASFQPFTQIQRDFLNQIAEMIATSVNTISVNTK 1279

Query: 185  LDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDLIAEL----EVAKSLSDET 238
             ++ L                   +  +     +   EK +L+A+     EV  +  +E 
Sbjct: 1280 TEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEA 1339

Query: 239  RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            R+  EE           KS FLA+MSHELRTPLN++L  ++++     G L+     E+ 
Sbjct: 1340 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAAGNLS-PKQVEFA 1398

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V       +    EK ++  
Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV------------------- 391
             ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G    V                   
Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPQSIREQLLEA 1518

Query: 392  -TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             ++    G     S+ D G GIA G++  +  +F Q          G GLGL I++ I  
Sbjct: 1519 GSLRDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578

Query: 451  NHGGQFLIRSKLREGVEVIAILPN 474
              GG+    S+   G      LP 
Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLPL 1602


>gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 545

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 22/348 (6%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L+I           L          + +A+   AI  + V        +   ++     T
Sbjct: 196 LIILQQAGLFKKMGLFQETVQKSTKISLAIMLFAITFVAVFSFFFIRSIYRPINALKAAT 255

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H+ + +++        D++ +       +S    K+ E+ +  KS F++++SH L+TPL
Sbjct: 256 DHIAQGDLEHRINITSNDEIGSLGRSFNEMS----KKLEQLDTMKSDFISNISHNLKTPL 311

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            AI   +E++  +  G ++ E  K  +  I  +   L+ +IN++LD+SRIEAG    +  
Sbjct: 312 TAIKEANELMLDKIAGQISFEQMK-LLNIIKGNTLRLILMINDLLDISRIEAGLMRYNFQ 370

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              + D++ E I  ++   ++K I I  + D  +  V  D   + Q++ NLLSN++KFT 
Sbjct: 371 PAQIRDVISESIEDVRFLTEKKGIFIQYEDDSLVPHVLLDRGKIAQIMDNLLSNSIKFTP 430

Query: 385 IGGRVHVTVGWTSGRGQ-----------------YISIKDNGPGIAEGEIPTVLTSFGQG 427
            GG + +                            ISI D G GI +    ++   F Q 
Sbjct: 431 TGGVITIKAFVVDASMLSPIFAQQGKLNNIQSFLQISISDTGIGIPKEHQNSIFDKFQQV 490

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +S  +G GLGL IA+ I+ +HGG   + S    G      LP  
Sbjct: 491 VNKRESGIKGTGLGLFIAKHIVEDHGGNIWLESNCGSGSTFHFTLPLR 538


>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
 gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
          Length = 1126

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 155/362 (42%), Gaps = 10/362 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
             G  W L   +           +       ++IA+    +++  L  ++      + + 
Sbjct: 323 VDGHLWGLSLELPEKEAFARIQQLEQIFVIAMIIAIVCVVIASHFLSNSITAPL--LRLT 380

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            + + + +  +    ++      +         + +S  + +    +++    ELE   +
Sbjct: 381 WAAERVSAGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKDQN---EELEANLA 437

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                    E  +  K  FLA+ SHELRTPL+ ++G +E +     GP++  +++  +  
Sbjct: 438 TIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEI 496

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQ L +L+N++LD  ++  G  ++++    L       + + Q     K+I I  +
Sbjct: 497 IINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQ 556

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +D SL  V+ DE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI 
Sbjct: 557 VDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIP 614

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             E+  +     Q         QG GLGL I++ ++   GG   + S+   G      LP
Sbjct: 615 ADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674

Query: 474 NT 475
             
Sbjct: 675 LA 676


>gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 592

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+A++SHELRTPL +ILG+ + +    +   + +T ++++  I      L  LI ++
Sbjct: 370 RNDFVANVSHELRTPLTSILGYLDTLLESDI--EDQKTKEKFLKIIKEETNRLSLLITDL 427

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LS+IE+  +EL       +   ++   +L+  AQ K+I I  +I+  L  V+   + +
Sbjct: 428 LNLSKIESQSFELY--PGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQV 485

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NL+ NA+K+++ GG ++++V        Y  I+DNG GI   E   +   F +  
Sbjct: 486 EQVLINLIDNAIKYSSSGGTINISV-QKKSDKLYFEIQDNGIGIPVDEQERIFERFYRVD 544

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G G+GL I ++I+  HG +  + S++ EG +    L
Sbjct: 545 KARSRELGGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588


>gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 778

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 11/234 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +    +E  + Y   I  SG+ LL +IN++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SEEQRLYANTIKNSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEA +  L      L   V E +++LQ  A+EK + +    D  L +    D   
Sbjct: 272 LDYSKIEAQKLILHPEPFDLERSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGG---RVH-VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+ NL+ NAVKFT  G    ++  ++         +++I+D G GI   ++  +   
Sbjct: 332 IRQVLTNLVGNAVKFTTEGHVNLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGE 391

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475
           F Q         +G GLGL I + ++   GG+  + S++ +G        LP  
Sbjct: 392 FNQVDDEQNRKFEGTGLGLAITKRLIELMGGEIWVESEVGKGSCFGFRIKLPLA 445


>gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
 gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
          Length = 970

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174
            +  L          LT+   A L++A+ I     ++          A  L      + +
Sbjct: 325 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 384

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233
             Q   +  +  +  A + A   +    I         K L    E  ++L+ E      
Sbjct: 385 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 444

Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           L++E            R  AE+ N AKS FLA+MSHE+RTP+N +LG + ++    + PL
Sbjct: 445 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 504

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K Y   I+RSG++LL ++N++LD S+IEAG  E+ ESA  L  +V +   ++Q R
Sbjct: 505 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 560

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EK++     I+  ++  W  D   + QV+ NL+ NA+KFT  G   ++V++       
Sbjct: 561 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 620

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA+ E  T+  +F Q S   K A  G GLGL I++ I+   GGQ  + S
Sbjct: 621 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 679

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  EG      +P T      P
Sbjct: 680 EEGEGSRFWFTVPLTPCDAVEP 701


>gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 618

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            + + N  +    A+      EL++      E  + AE  N +KS FLA+MSHE+RTP+ 
Sbjct: 175 RMDQLNQLVEQRTADLIKAATELKLTNEQLVEASRAAEAANRSKSEFLANMSHEIRTPMT 234

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G++E +          +     +  I R+G HLL +IN++LDLS+IEAG+ ++    
Sbjct: 235 AIIGYAEELRETGEIERAPKERVFALDTILRNGHHLLQVINDVLDLSKIEAGKLDVYMQP 294

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
            S + IV + + ++ LRA +K + +  +    L   +  D   +RQ+++NL+ NA+KFT 
Sbjct: 295 ASPVRIVSDVLALMHLRASQKGLRLENEFCGPLPETIVTDVTRLRQILINLIGNAIKFTD 354

Query: 385 IGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G V +        +        + D+G G+ E E+  V   F Q + ++     G GL
Sbjct: 355 K-GTVSLRTKLIDIGSDNPRLEFEVVDSGIGMTEDELRRVFVPFEQANNSMSRRYGGTGL 413

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I+  +    GG     S L  G      +
Sbjct: 414 GLSISIRLTELLGGSMRCESSLGHGSYFHFTI 445


>gi|15604100|ref|NP_220615.1| histidine kinase sensor protein (barA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3860792|emb|CAA14692.1| HISTIDINE KINASE SENSOR PROTEIN (barA) [Rickettsia prowazekii]
 gi|292571826|gb|ADE29741.1| Histidine kinase sensor protein [Rickettsia prowazekii Rp22]
          Length = 497

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E            ++ E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLETNRNLKAQIEKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DIH +G+HLL++IN+ILDLS+  A + ++    + L  ++   +I+++
Sbjct: 299 --DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  +E+  ++      + AD K ++QV+LNLLSNAVKFT  GG V +++      +
Sbjct: 357 PRAYQAEVELISRLPKEHVVINADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ +G  V    
Sbjct: 477 SKINKGTTVTITF 489


>gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 614

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             ++ K+A   + AKS FLA+MSHE RTPLN I+G +++     +   +N   KE +  +
Sbjct: 228 LRKSSKQANAASEAKSEFLANMSHEFRTPLNGIMGMTQL----AISKSSNTQQKELLEVV 283

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +S   LL ++N+ILDLS+IE+ R  +    +SL  +V       QL A++K IE    +
Sbjct: 284 IQSADALLMIVNDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTTV 343

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGP 410
            P     + +D   +RQ++ NL  NA+KFT   G V V++       G+     I D G 
Sbjct: 344 SPRCPELIVSDAVRLRQILFNLTGNAIKFT-KSGSVTVSIEPIQLPDGKYLLFEIADTGI 402

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +  + T+  +F Q   +      G GLGL I + +    GG+  + S + +G     
Sbjct: 403 GIPDKLLNTIFEAFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFSV 462

Query: 471 ILPN 474
            +P 
Sbjct: 463 FIPL 466


>gi|330502153|ref|YP_004379022.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328916439|gb|AEB57270.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 829

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 19/382 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVAL 174
           + W  +   +        L      + + +    L+    +   L  A  + F+ V  A 
Sbjct: 341 IAWATIPATDWH------LLTVVDESEVFSQTNELASHYRNIGYLLIAGLVLFYLVFFAF 394

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS- 233
                  +        G + + L       +   +    I   +   DD+ +  +  +  
Sbjct: 395 MWGRARELTERLRKPIGGIVSMLREIGQGNWKPKRPATTIDELETIIDDVESMGQRLERN 454

Query: 234 --LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                   + A+E + AKS+F++SMSHELRTPLNAI GF++++ ++      N+   +Y+
Sbjct: 455 ATQLQRASQEAQEASRAKSQFISSMSHELRTPLNAIQGFAQLMRMQQ--APQNKQDTDYL 512

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I  + +HL  L+ +ILD S +++ +  L  + +  + ++ EC  ++   A+ + + + 
Sbjct: 513 EEILLASRHLNQLVGDILDWSSLQSDQPRLEMARVDAVTLMSECADLVAPEAEARGLTLH 572

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                    V AD + +RQV+LNLLSNA+K+T   G V ++      +   + I D G G
Sbjct: 573 LSFPERSLQVLADPRRLRQVLLNLLSNAIKYTPK-GSVTLSC-MQMDKHVRLMISDTGMG 630

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA    P +   F +       A QG G+GL + +   A   G+  + S+  +G +    
Sbjct: 631 IAPELQPLLFEPFQRLGQ-ENGAIQGTGIGLSLCKEYAALMNGEMGLYSEPNKGSQFWID 689

Query: 472 LPNTRVLNFIPEDNHESTQYKC 493
           LP   V + +PE      +  C
Sbjct: 690 LPRY-VESSLPESAPHEARQAC 710


>gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2]
          Length = 499

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  ++ +     Q    
Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G ++   T+   +     
Sbjct: 367 ISGIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIYFGYTLDNRNANSVQ 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +  +  +   F +      + +QG GLGL I ++I+ +  G   + SK+
Sbjct: 426 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDIFVESKI 481

Query: 463 REGVEVIAILPNTRVLN 479
            EG      LP  R + 
Sbjct: 482 GEGSCFTVTLPFERKVE 498


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1355

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 38/317 (11%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +       + ++L   A+      E +       + R  A     AKS FLA+MSHE+RT
Sbjct: 624 LNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSQARDEALAATRAKSEFLATMSHEIRT 683

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NA++G + ++    +  +     ++++  I  S   LL+LIN+ILD S+IE+G+ +L 
Sbjct: 684 PMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLE 739

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
               SL   + E + +L  +A  K++E+   ID      V  D   +RQ+++NLLSNAVK
Sbjct: 740 AFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVK 799

Query: 382 FTAIGGRVHVTVG---------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           FTA  G V V+V                +++     +++ D G GI    +  +  SF Q
Sbjct: 800 FTAR-GEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQ 858

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-----------------KLREGVEVI 469
              +      G GLGL I+Q +    GG+  + S                    +G    
Sbjct: 859 VDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFY 918

Query: 470 AILPNTRVLNFIPEDNH 486
             +      N +P+ NH
Sbjct: 919 FSIVVQSSQNLLPQWNH 935


>gi|74318689|ref|YP_316429.1| periplasmic sensor hybrid histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058184|gb|AAZ98624.1| Periplasmic Sensor Hybrid Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 841

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/412 (24%), Positives = 163/412 (39%), Gaps = 19/412 (4%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
            +      L   + +   D    E+            AI +  T L+L       P  + 
Sbjct: 35  IVIGLGFLLYFSRDLATLDESTREIAQLISAFFT---AIAVVITALSLTSLKVSPPRRIV 91

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
                    +  ++       P  V      V + ++        V  + +A  +A    
Sbjct: 92  AMALDYATCSFLLTYTGEAGSPLLV------VYLWVTLGNGFRYGVFYLYIAAAMAITGF 145

Query: 199 FFTYITYHLFKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                    + S++ I L+       +               +R  + +LAKS FLA+MS
Sbjct: 146 LLVLTYSSYWNSHMSIGLAFLLSMIAVPLYSASLLKQLHSAVERERKASLAKSSFLANMS 205

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN ++G ++++    +    N+  KE+   I  S   LL LI+ +LD+SRIEAG
Sbjct: 206 HELRTPLNGVIGVADLLAETKL----NKEQKEFAQIIRTSADTLLELIDNVLDISRIEAG 261

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           R   S     L  ++   + M++ +A  K + +   I P     +  D   +RQV++NL+
Sbjct: 262 RILTSSEDFDLHRVINGTVAMMETQANAKGLVLAAHIAPQTPFQLQGDAPHLRQVLINLI 321

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NAVKFT   GRV V V            + + D G GI       +  SF Q   +I  
Sbjct: 322 GNAVKFT-EHGRVDVYVRPVGQGNPQRLRLEVVDTGIGIPPDAQIRIFDSFTQADASITR 380

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              G GLG  IA+ ++   GG+  + S+  EG      LP     +  P + 
Sbjct: 381 RFGGTGLGTTIAKQLVEAMGGEIGLHSREGEGTTFWFELPFALRSSGQPAEE 432


>gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
 gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
          Length = 1430

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 10/260 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL+  +    + R+ A     AKSRFLA+MSHE+RTPL  I+   E+ E   +G    
Sbjct: 777  ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGY--- 833

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++    + +S  +LL+++N+ILD S+IEAG+  L     SL  +      +   +A 
Sbjct: 834  -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 892

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
             K ++    +DP L   V  D+  + QV+ NLLSNA+KFT   G V +           +
Sbjct: 893  AKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT-EYGTVGLAAKLLDLDGEQQ 951

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 + D+G GI+E  I  +   F Q          G GLGL I++ ++   GG   + 
Sbjct: 952  QICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGSLNVT 1011

Query: 460  SKLREGVEVIAILPNTRVLN 479
            SK+  G      LP   +  
Sbjct: 1012 SKINIGSTFSITLPLKTLAE 1031


>gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
 gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
          Length = 591

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI++          +   D   
Sbjct: 424 LALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1086

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E  +      E +  AE  +  KS FLA+MSHE+RTPLN I+G  +++    +     
Sbjct: 693 ITERVLTSRALVEAKDLAESASRVKSEFLANMSHEIRTPLNGIMGMLQLLRAGDL----T 748

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY     ++ + L  L+ +ILDLSRIEAG+ ++ E  ++L D +     M  + A+
Sbjct: 749 EEQAEYAAYGIKASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAAR 808

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
            K + +   +   L   ++ D+  ++QV++NL+ NA+K+T  GG V V V          
Sbjct: 809 SKGLSLVFDLPDDLPDRLFGDDTRIQQVLVNLIGNAIKYTETGG-VTVEVTTLPRLRPDT 867

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GI + ++ TV   F Q S       QG GLGL I + ++   GG   +
Sbjct: 868 VHVLFTVTDTGIGIPDDKLGTVFEHFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAV 927

Query: 459 RSKLREGVEVIAILPNTRVLN 479
            S+   G      +P     +
Sbjct: 928 DSEPGRGTVFGLCVPLRPADD 948


>gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1017

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 198/461 (42%), Gaps = 24/461 (5%)

Query: 34  DREIITLHVESLFRVSPILPLFVLL-VANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90
            +++       L R S ++   +++ V +I  +  +  +     + L  + +    + +G
Sbjct: 167 AKQLQQEKSVELVRDSLVIGSLLVIGVYHIILYLLRRNDVTPLYFGLFCMCIAVRTMLVG 226

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144
            + +   I     +VW   +    I +G  + +  +                     S T
Sbjct: 227 SRFILE-IFPAFSWVWFAKVSYLTIYVGELFLISYIYHLFPQFLSRKVWRLTQFFTISLT 285

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           LL+  +   + ++ L      S   V+ A+     ++    + ++  +L  +L F T + 
Sbjct: 286 LLVLTTDIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 345

Query: 205 YHLFK----SNVKILSCQA------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L +    +   +L          +   L  +   A    +   +R    +  K  FLA
Sbjct: 346 DTLNRKGVFTTPALLQFGVLGFVFLQALLLSMKSSRAFFQVERLSERLLTLDKLKDEFLA 405

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
             SHELRTPL+ I+G ++ +   + G L +    + +  +  SGQ L +L+N+ILD S++
Sbjct: 406 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVI-DLLRLMKVSGQRLAHLVNDILDFSKL 464

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           +     L    ++L   V   + +L   A++K + +  ++   +  V ADE  ++Q++ N
Sbjct: 465 KHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDM-YVMADENRLQQILHN 523

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+ +T   G V VT     G+   + I D+G GI+E ++  +  SF Q +   +S 
Sbjct: 524 LIGNAIAYTET-GTVTVTAKRLQGQ-VSVQITDSGIGISEADLDRIFESFEQINPLDRSQ 581

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + G G+GL I + ++  HGG+  + S + EG      LP  
Sbjct: 582 QGGTGIGLSITKKLVELHGGRIGVTSGVGEGSTFSFTLPMA 622


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 9/248 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E R      +  +  F+A++SHELRTP++ + G+SE I  +  G   ++  KE  
Sbjct: 354 RDMTEERRH-----DKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAG--TDQEKKELA 406

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     +  L+NE+LDL+R+EAG  +LS   I +           Q  A+E+ + + 
Sbjct: 407 KIIYDESLRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKEQQLTLD 466

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                     +  D   + QV+ NLLSNA++ T  GG V +           I + D G 
Sbjct: 467 FIYRGDEGKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENG-VKIDVTDTGT 525

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P V   F +   A      G GLGL I ++I+  H G+  + SK +EG    A
Sbjct: 526 GIPEEDLPYVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQEGTTFTA 585

Query: 471 ILPNTRVL 478
             PN R +
Sbjct: 586 FFPNARTI 593


>gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437]
          Length = 461

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 132/319 (41%), Gaps = 10/319 (3%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   +  S   +++A +   ++    +   L+  L   L         L K  + I +  
Sbjct: 135 LRMGIRDSTTVLLIAGAIIFLLISLPVAYWLSKRLTAPLRLMIPAIDRLGKGELGIQAPV 194

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +D+     +    +S    K+ ++   A+   +A ++HELRTPL  + G  E I+   
Sbjct: 195 VSRDEYGKTAKAFNQMS----KQLQQAEEARKNLVADVAHELRTPLTVLQGKLEWIQQRG 250

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                     E +  +      L  L++++  LS  EA +  L +    L  ++R  I  
Sbjct: 251 -----QPVRPENLLPLQDELIRLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDR 305

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +Q  A  K +EI    D  +  +  D   + QV LNLL+NA+++T  GG V V +     
Sbjct: 306 IQPDADRKGVEIRLHCDAGIPPISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKE 365

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             Q I + D G GI    +P +   F +   +      G+GLGL IA+  +  H G   +
Sbjct: 366 GLQ-IQVSDTGVGIPPEHLPHLFNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEV 424

Query: 459 RSKLREGVEVIAILPNTRV 477
            S   +G   I  LP   V
Sbjct: 425 ESAPDQGTTFIVELPFQGV 443


>gi|330899200|gb|EGH30619.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 619

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L  +++          A+ LS     +  + +AI   
Sbjct: 126 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 185

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +   +TR+ A
Sbjct: 186 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 234

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 235 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 290

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360
            +IN+ILD SRIE    ++     +L ++V          A ++ + +   I P L   +
Sbjct: 291 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRTLLLELHIQPGLETLN 350

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416
           V  D   +RQ+++NL+ NA+KFT   G+V V   W        + +  ++D+G GI    
Sbjct: 351 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDELLHFTCAVQDSGIGIDAER 409

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++  +F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 410 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 467


>gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 1479

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 7/338 (2%)

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
             S L        V +       AL    + S          +L   L     +  +  ++
Sbjct: 991  GSGLGAATPASIVIVPVMFQGEALGVIELASFGEFGHGHLDLL-DQLKENIGVNVNTMQA 1049

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            N +  S   E   L  EL       ++  ++    +  KS F+A+MSHELRTPLN++L  
Sbjct: 1050 NARTDSLLVESQRLTEELRAGSVELEDRARQLSSASKYKSEFMANMSHELRTPLNSLLIL 1109

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            ++++     G L N    E+   IH SG  LL LI++ILDL+++E+G  ++    + + D
Sbjct: 1110 AKLLTDNLDGNL-NPKQVEFARTIHSSGTDLLQLIDDILDLTKVESGHMQVQTDPVRVSD 1168

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +V     +    A EK +     + P +  ++  DE  ++Q++ NLLSNAVKFT   G +
Sbjct: 1169 VVGYVESLTLPLAAEKGLGFDVSVQPDVPSTLHTDEHRLQQILRNLLSNAVKFTHE-GEI 1227

Query: 390  HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             + +  T+G      ++D G GI   ++  +  +F Q          G GLGL I++ + 
Sbjct: 1228 RLRI-RTAGPSVAFDVQDTGIGIPAEKLSVIFEAFQQADGTTSRKYGGTGLGLSISRELS 1286

Query: 450  ANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDN 485
            A   G+  +RS+   G      LP     +++  PE  
Sbjct: 1287 ALLEGRLDVRSEPGFGSTFTLYLPLGDQSLVDVRPEPE 1324


>gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1001

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 21/422 (4%)

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
                      + +   L   A             ++        I L+           
Sbjct: 345 SVVEALAVPLGVTAGAALFAIAVLWLAIVLFDRRALRPAYRRA--IRLIESDALNRALI- 401

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
                      P  L +   A     +S   ++ +    A       +  A       S 
Sbjct: 402 --------RTAPAGLALLSLADGDEIVSNETMARYERLAAGAPLGKRLWRAYREHRDASG 453

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
           +   ++    +A   +   ++  ++ ++  + +         I   +  +    E R  A
Sbjct: 454 YAKVVTCELPIAPDRADTPHVVANIMRTRYRGVDALLCTLTDITARKQMEQKLHEARVAA 513

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKS FLA+MSHE+RTPLNAI+G  E++    + P    T +  +  I  S   LL
Sbjct: 514 ESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAP----TERRRLDTIASSSDALL 569

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            +I+++LDLS+ E+ +  +      + D++ +     +  A  K +E+  ++ P L+   
Sbjct: 570 RIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELTCRVAPELADGY 629

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEI 417
             D   +RQ++ NL+ NA+KFT   G V +          G    I + D G GI    +
Sbjct: 630 VGDPVRLRQIVSNLVDNAIKFTER-GSVSIDAQRVVRGAGGARVEIRVADTGIGIPADSL 688

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           PT+   + Q   +I     G GLGLP+ + I     G  L+ S+  EG  +   LP    
Sbjct: 689 PTLFDVYIQADASIYRRFGGTGLGLPLCRRIATLMHGDLLVDSREGEGTTMCVTLPLPEA 748

Query: 478 LN 479
             
Sbjct: 749 PP 750


>gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
 gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
          Length = 619

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + E   +++    +    ++ +IN+
Sbjct: 377 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVAQQETSRMIRMIND 434

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +          +K   I +++      
Sbjct: 435 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 494

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  +      +SI D G GI   ++  +
Sbjct: 495 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 553

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 554 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYETMTEE 613


>gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
 gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
          Length = 617

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 11/241 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++       + ++ +IN+
Sbjct: 374 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 431

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--------EKNIEIFQKIDPSLS 359
           +L LSR++ G  ++    ++  D +   +    +  +        +K   I +KI     
Sbjct: 432 LLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDL 491

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  D   M QVI N+++NA+K++  GG + V +  +  +   +SI D G GI + ++  
Sbjct: 492 WVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQ-IILSISDQGLGIPKKDLNK 550

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A    + G GLGL IA+ I+  H G+    S+  +G      LP   +  
Sbjct: 551 IFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFEPMSE 610

Query: 480 F 480
            
Sbjct: 611 E 611


>gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 391

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I +L+  +      +++AE  +L+KS FLA+MSHE+RTPLNAI GF+EV+        
Sbjct: 141 HDITQLKETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITGFAEVLAS----AN 196

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y   I  +   LL L+N+ILD+S+IEAG  E   + + +  ++ +   + Q+R
Sbjct: 197 TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMR 256

Query: 343 AQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
             +    I    +PSL   S+  D   + QV+ N  +NA+KFT  G    +++G+ +   
Sbjct: 257 VNDAGKNIRIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEARDT 313

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y  + D G GI   ++P V   F +        ++G GLGL I+++I+    GQ    
Sbjct: 314 ELYFYVTDTGAGIPADKLPEVFGRFVKL----NKDKKGTGLGLSISKTIVNKLEGQIGAD 369

Query: 460 SKLREGVEVIAILP 473
           S   +G      +P
Sbjct: 370 SVEGKGSTFWFTIP 383


>gi|225026831|ref|ZP_03716023.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353]
 gi|224955838|gb|EEG37047.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353]
          Length = 437

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 142/304 (46%), Gaps = 12/304 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-EKDDLIAELEVAKS 233
           ++        +   +A  +   +     + + + K+ VK +   A + +D        + 
Sbjct: 140 ASNIWTVGGKIFPIIAATILVMMILCIILAHFMTKNLVKPIEQMAVDINDFSITPAYKEL 199

Query: 234 LSDETRKRAEEENLAKS-----RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  RA+  ++ KS      F A++SHEL+TPL AI G++E++E    G +  E   
Sbjct: 200 APFAATIRAQHADILKSARMRQDFTANVSHELKTPLTAISGYAELMEN---GMVPPEEIG 256

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            +   I ++ + LL+LIN+I+ LS +++   +L      L +  + C+  +Q+ A++ ++
Sbjct: 257 SFAQKIEKNARRLLSLINDIIRLSELDSSNTQLLVEKFDLFEEAQICVENMQIYAEKNDV 316

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I    +     + A+ + + ++I NL +NA+++    G V V V  +S    YIS+ D 
Sbjct: 317 TITY--EGGHQEITANREMINELINNLCANAIRYNKKNGSVKVRVD-SSQGHPYISVADT 373

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++     V   F +   +      G GLGL I + I+A H  Q  + S++ +G  +
Sbjct: 374 GIGISKEHQKRVFERFYRVDKSRSKQTGGTGLGLAIVKHIVALHDAQLNLESEVGKGTTI 433

Query: 469 IAIL 472
               
Sbjct: 434 TVTF 437


>gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 497

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 151/342 (44%), Gaps = 7/342 (2%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +   I   +      A       +V+     A +       +LA  ++  L   T     
Sbjct: 159 VIGGIIVNAPLASLRANAAQISSLVLYSLLFATLVAGFFAFNLAKTISRPLQAMTSAAMD 218

Query: 207 LFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +   N +    ++ + E   L A    A   +++T    +     +   +AS+SHE R P
Sbjct: 219 MKSGNFRNRIDINDKGELGQLAATFNQAVEETNKTIHEQKRLQALRQNLVASVSHEFRAP 278

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L +I GF + +     G +  E  ++Y+  I  +  HL  L+N+++DL+ IE+G  +L  
Sbjct: 279 LTSIQGFVDAMLE---GFIREEEQEKYLRVILNNTLHLNRLVNDLVDLASIESGYVQLRY 335

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +    +  + +  +  +AQEK+I++    +  L ++  D   + Q+++NLL NA+ +T
Sbjct: 336 EDVDPYTLAEKALDSVYPQAQEKSIKLEYNYEEGLPAIRGDGDRLYQILINLLENAITYT 395

Query: 384 AIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              GR+ +    +  +     ++KDNG GI   EIP +   F +   A   A +G GLGL
Sbjct: 396 PDEGRIALEAQLSDDKEKVIFTVKDNGQGIPLAEIPYIWERFYKVDKARNRANKGKGLGL 455

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            I + ++  H G+  ++S   EG     I+P     +    D
Sbjct: 456 AIVRELVHMHNGEVAVKSTPGEGSAFSVIIPIEEKEDEKSPD 497


>gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 757

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 5/238 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQ 299
           A+  +L+KS FL+++SHEL TPL  ++G +  +         L+ E  K+YI  I  +G+
Sbjct: 374 AQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKYIESIQANGK 433

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PS 357
            L++LIN+ILD S + +G Y+L     SL  +    +   Q  AQ+K+IE+         
Sbjct: 434 KLMDLINDILDYSSLTSGNYQLRIREFSLYSVASAVMGDFQEEAQKKSIELVLDFQVKKE 493

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
               +AD   ++Q+I +L++NA+KFT  GGRV + +     +  +  I+D G GI + ++
Sbjct: 494 EIKFYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKNQ-VFFQIEDTGIGITQDQL 552

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           P +   F Q   + +    G GLGL + + ++  H G   + S   EG      LPN+
Sbjct: 553 PLLFEKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFTVRLPNS 610


>gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1047

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 153/265 (57%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 781  LRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 840

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 841  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQP 900

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 901  QANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 960

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------AEQGVGLGLPIAQSIMANHG 453
             + ++D G G+ + E+   L  F Q +   +           +G GLGLP+ ++++  + 
Sbjct: 961  VMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1020

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S    G  V    P TRVL
Sbjct: 1021 AQFAIDSTPGHGTVVEIAFPPTRVL 1045


>gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 752

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 158/414 (38%), Gaps = 16/414 (3%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
            +          + + LA+ +  L   +K M       E    R W L        C   
Sbjct: 55  AFAIGISFLFALACVALAILSMRLRGMRKKMRKIALHNEALADRNWELKEAEERSRC--- 111

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAIMS 181
                      + + +     ++ +++ +         A  L   F   V+      I +
Sbjct: 112 -----LFESQGDLIVLRDGNGIITSVNDAYCILAQRSRADLLGIRFALPVLEQGESVIEA 166

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                       A    +  +    +          Q    D+    E AK    E R  
Sbjct: 167 NGTRVYDQRVETALGPRWIAWREALMRIDANHPAELQCVGRDVTDRTE-AKRALGEARDH 225

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A   N AKSRFLA  SHE RTPLN I+G S ++    + P        Y+  +  SG  L
Sbjct: 226 ANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETALTP----EQTTYVKAVKASGDAL 281

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L+LI E+LD SRIEAG+ +L      L D++ +   +L  RAQ + + I   ID +L   
Sbjct: 282 LSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQARQLAIASYIDETLPTE 341

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   +RQV+LNL  NA+KFT+ GG   +             ++D G GIA      +
Sbjct: 342 VIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRFMVRDTGIGIAPDAQARI 401

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    I     G GLGL I+  I+   GG   ++S+   G      +P 
Sbjct: 402 FRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPGSGSTFEVSVPL 455


>gi|332705480|ref|ZP_08425558.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
 gi|332355840|gb|EGJ35302.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
          Length = 606

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 16/286 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                + +K++   AE+              +   +RAEE +  KS FLA+ SHELRTPL
Sbjct: 312 RQWSAAEIKLVGELAEQVGTAIAHGTLYKELEIASERAEEASRHKSDFLANTSHELRTPL 371

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++GF +++        + +  +++I + + S  HLLN+IN+ILD+++IEAG+ EL  +
Sbjct: 372 NGMIGFLKLVLDGM--ADDPQEQRDFIQEAYNSALHLLNIINDILDIAKIEAGKMELELA 429

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382
            + L  + R+       +AQ KN+ +  ++        ++ + + + QV+LNL+ NA+KF
Sbjct: 430 PVELDSLFRKVEDFTINQAQLKNLSLRIEMPDVYDGIVMYGNYQRLLQVMLNLVGNAIKF 489

Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           T  GG V V+                    + + D G G++  +   +  +F Q   +  
Sbjct: 490 TDEGG-VTVSAEVIRKKITFKGTEFPGLVKVRVADTGIGVSLDQQDRLFQTFTQVDGSRT 548

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477
               G GLGL I+Q ++   GG     S     G  V   +P  +V
Sbjct: 549 RQYGGTGLGLVISQKLIETMGGVVNFFSMGENLGSTVTFTVPLYQV 594


>gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
 gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
          Length = 591

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K +++ 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + V  T   G    ++D+G G
Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           I E +IP +   F +   A    ++ G GLGL IA++I+  H G+  + S + EG     
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSV 584

Query: 471 ILPNT 475
            LPN 
Sbjct: 585 YLPNR 589


>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 1209

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 8/260 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     K+ F+A +SHELRTPL +I G   ++    +G L        I    ++
Sbjct: 709 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKN 764

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ LIN+ILD+ +IE+G+       + L ++VR+ I   +   Q+ ++ I       
Sbjct: 765 SERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLP 824

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V+ D   + QVI NL+SNA+KF+  GG+V V +G        I++ D+GPGI     
Sbjct: 825 GVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFR 884

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473
             +   F Q   +    + G GLGL I+++I+  HGGQ    +    G      L    P
Sbjct: 885 DRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTTFYVDLAEYRP 944

Query: 474 NTRVLNFIPEDNHESTQYKC 493
           NT     +P  +       C
Sbjct: 945 NTNTTVSLPPQSDRPRILIC 964


>gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
 gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
          Length = 1193

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 11/265 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ + AK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 793  RMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 848

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  ++R+   +++  A++K
Sbjct: 849  QQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQK 908

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQY 402
             +    +++ +L  ++  D   ++Q++LNLL NAVKFT   G V + V         G  
Sbjct: 909  QLVFECELEDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVSLRVSVLPQGHKQGIR 967

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG+  + S+
Sbjct: 968  MEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGEVTVSSE 1027

Query: 462  LREGVEVIAILPNTRVLNFIPEDNH 486
            L  G   +  LP   V   +P    
Sbjct: 1028 LGRGACFVVELPLRWVA-ALPAVTP 1051


>gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 949

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 10/276 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    + E +  +    +     E+ N  KSRFLA++SHE+RTP++ ++G S ++   + 
Sbjct: 549 EAGLDVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTS- 607

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               ++  K  I +I    ++LL +INEILD S++E+G Y L +    L  +       L
Sbjct: 608 ---ADDDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAAL 664

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             + QEKN+E    I+  +   +  D   ++++++NL +NAVKFT   G V +     + 
Sbjct: 665 CSQVQEKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDA-GNVILRASLLNR 723

Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G G+      T+   F Q          G GLGL I +S++   GG
Sbjct: 724 SKDRLEILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGG 783

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              + S   EG      +P       +   + +S Q
Sbjct: 784 HIWMESTPGEGSSFFVRIPFEPAEASLQISSVQSGQ 819


>gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 964

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  ++     +++AEE   AKS FLA+MSHE+RTP+N+++GFS +     +    +
Sbjct: 283 ITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLALKTNL----D 338

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   +Y+  I  S + LL LI +ILD S+IEAG+  +     +L +++     +   RA+
Sbjct: 339 KQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSVAALNANRAE 398

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EK +++      +L   +  D   + QV+ NL+SNAVKFT   G V V V     + Q  
Sbjct: 399 EKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTE-GHVQVLVEPLHQQEQEL 457

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D+G G++  ++  + T F Q  ++      G GLGL I ++++   GG   +R
Sbjct: 458 LLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEMMGGSISVR 517

Query: 460 SKLREGVEVIAIL 472
           S+ + G      +
Sbjct: 518 SQEQVGSHFEFTI 530


>gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
 gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
          Length = 926

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 142/268 (52%), Gaps = 8/268 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +   S     +++AEE +  K+ FL +MSHE+RTP+N ILGFSE+++   +   
Sbjct: 533 EDITERKRLWSELVAAKEKAEESDRLKTCFLENMSHEIRTPMNGILGFSELLKEPLLDGS 592

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +   EYI  IH+SG+ +L++IN+++D+S+IEAG   +  +  SL  I  +     + +
Sbjct: 593 KKD---EYIELIHQSGKRMLSIINDLIDISKIEAGEIAIQYTEASLDKIFHDLQAFFEPQ 649

Query: 343 AQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           A  K + +     + PS S +  D+  + Q++ NL+ NA+K+TA  G +       +G  
Sbjct: 650 ATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNLVQNALKYTAS-GEICFGCT-KNGDF 707

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               ++D G GI +     +   F Q  +      +GVGLGL I++S++   GG+  ++S
Sbjct: 708 LDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVREYEGVGLGLSISKSLVELLGGRIGVQS 767

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488
              EG      LP    +  +P++  ++
Sbjct: 768 SAGEGSVFSFSLPYNSAV-SLPKEIKQA 794


>gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii]
 gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 771

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 178/484 (36%), Gaps = 29/484 (5%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           M +S + + + +   +     H+               TL ++ L  +   L    L  A
Sbjct: 315 MTKSLQERNQAISANLETIRRHVTQLTTLNQSSTAITSTLDLDRLLSIVLQLLSANLGFA 374

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
            +  +   +          L +                   E       L +     G  
Sbjct: 375 RMVLFLWDSERGVATVGQMLGM-----------------PQEAEEAARRLEIPVYEDG-- 415

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
                             ++  +   +A  IS      L      SF    +    + + 
Sbjct: 416 ------GFAAELLIHGKPLFVPSIEPVADRISPAVLPWLRQVGISSFVAAPLRSQQRILG 469

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKI--LSCQAEKDDLIAELEVAKSLSDET 238
            +     +            T  ++     +            D L   ++         
Sbjct: 470 YLGADRGTQPCSQEDLDLLITIASHVAVAVDNARAYTELATLTDHLERRVQERTHELQTV 529

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +R +E +  +S+F++  SHELRTP+ +I GF E +     G L+ E  + Y+  +  + 
Sbjct: 530 NERLQEHDQRRSKFVSVASHELRTPMTSIKGFVENMLDGLTGQLS-ERQEHYLQRVKHNV 588

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  +IN++LD SR++ GR E+    + + + VR+ +   Q  A EK+I +        
Sbjct: 589 DRLTRIINQLLDWSRLDVGRIEIKPEPLHIDEFVRDVVESFQTLAAEKSIVLDVLPCEQP 648

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +V AD   + Q++ NL+ NA+KFT   G V V+      R   I++ D G GIA  E+P
Sbjct: 649 ITVRADRDKLEQILWNLVGNAIKFTPPSGHVSVSCSICDARYAQITVADTGCGIAPDELP 708

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            V   F +   A+ S  QG  LGL I +S++A HGGQ  + S+L  G +    LP     
Sbjct: 709 HVFNEFSKVESAMPS-SQGAQLGLFITKSLVALHGGQMCVDSRLGVGTQFYFTLPLDNAP 767

Query: 479 NFIP 482
              P
Sbjct: 768 ASTP 771


>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein protein
           [Shewanella amazonensis SB2B]
 gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1021

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE   +   E R++AE  +  K+ FLA MSHE+RTP+N +LG   ++E   +       
Sbjct: 375 ELEHKNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSI----Q 430

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K Y+     S + LL L+N+ILD S+IE+G++E+ E    LI ++ + I    +RA+ K
Sbjct: 431 QKHYLDVASTSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAK 490

Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQ 401
            +++   I    L  V  D   +RQV++NL+SNA+KFT + G + V V  +         
Sbjct: 491 GLKLLLDISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEV-GWIAVRVQASEDTANGVSL 549

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +SI+D G GI++ +   + + F Q          G GLGL IA+ +     G   + S 
Sbjct: 550 MVSIEDTGIGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISA 609

Query: 462 LREGVEVIAIL 472
              G      L
Sbjct: 610 EDAGSTFKFHL 620


>gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 157/258 (60%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + + A+    + R  AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP+
Sbjct: 1003 RDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPV 1062

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++  A+SL D + E + M+Q +
Sbjct: 1063 ANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQ 1122

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I       L  V AD + +RQ+ LN+LSNA+++T  GG+V V+  + +     
Sbjct: 1123 ANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVV 1182

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + ++D G G++  EI   L  F Q +   +    G GLGLP+ ++++  +  +F I S  
Sbjct: 1183 MRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRARFTINSTP 1242

Query: 463  REGVEVIAILPNTRVLNF 480
             EG  V    P+TRVL  
Sbjct: 1243 GEGTLVEVAFPSTRVLAE 1260


>gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1441

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 8/268 (2%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            + +   +    Q   +++  +L        E R RA +    KS+FLA++SHE+RTP+N 
Sbjct: 856  VIRDITESKQIQHSLEEVNHQLSCKNKELVEARDRALKAIQMKSKFLATISHEIRTPMNG 915

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            ++G +E++    +    N    E    I++SG+ LL++ ++ILD S+IEA + EL     
Sbjct: 916  VIGMAEMLLTSKL----NPEQYEIADTIYKSGELLLSITSDILDFSKIEASKLELEMIEF 971

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
              I  +      L +   +K   I        + +  D   +RQ+ILN+  NA+KFT  G
Sbjct: 972  DFIGCIEGVFNTLSISLDKKIEIILLFEKDVPTKLIGDPNRLRQIILNIGHNAIKFTDKG 1031

Query: 387  ---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
               G + V           +SI+D G GI   +   +   F Q   +      G GLGL 
Sbjct: 1032 HVFGHISVVSRERGTVQICVSIQDTGIGIEPEKRDMLFEPFSQLDSSTTRKYGGSGLGLA 1091

Query: 444  IAQSIMANHGGQFLIR-SKLREGVEVIA 470
            I   +     G   +  S+  +G     
Sbjct: 1092 ICSPLAKLMDGDVSLDWSQPGKGSIFSI 1119


>gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 832

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 133/265 (50%), Gaps = 20/265 (7%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIEL-------------ETMGPLNNETYKEY 290
           E +  K+ F++++SHELRTP+ +ILGF+++I+              +          K+ 
Sbjct: 370 EVDNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTERAINQVKDN 429

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           IG I   GQ L  LIN++LD++++E+G+ +     I + +++   +       + +++++
Sbjct: 430 IGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPLWKPQDLQM 489

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              ++ ++ ++  D   + QV++NL+SNAVKFTA  G +  T   +      +S+ D G 
Sbjct: 490 VVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTAS-GSITCTA-RSHADEIMVSVSDTGS 547

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+  +   +   F Q    +    +G GLGLPI + I+ +H G+  + SKL EG     
Sbjct: 548 GISPEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKLGEGSSFHF 607

Query: 471 ILPNTRVLNFIPEDNHESTQYKCYA 495
            L        +P++  +   +   A
Sbjct: 608 TL-----AIGVPDEETQIPAHITKA 627


>gi|254444998|ref|ZP_05058474.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259306|gb|EDY83614.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 637

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 24/343 (6%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                  + V L   +I++  VL   L+  +   ++     T  + + +      +   D
Sbjct: 165 FIYGRLIMFVVLVLASILTAIVLASRLSERILRPITELAKTTRRITEDHDVSTRQKRISD 224

Query: 223 D-----------LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           D           ++AE+E  +      ++ AE  + AK  FL+ +SHELRTPLN I+G+ 
Sbjct: 225 DETGQLVDAFNEMMAEIEKREDALVLAKETAEASSRAKDDFLSVISHELRTPLNPIIGYV 284

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++  +T    +    ++ +G + +   HL +LI+ ++D SR E G   L+   +    +
Sbjct: 285 EILLRKTAEAED----RKQLGLVKQYATHLQDLIDHVIDYSRFERGIVNLTLEPVDYQRL 340

Query: 332 VRECIIMLQLRAQEKNIEIFQKID------PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +  I +L+ +A+ K + +  +           +++ AD   ++QV+LNL++NAVKFT  
Sbjct: 341 CQNVINLLERQAKSKGVTMTCQHQFGNDAFKEKNTLSADRVKLQQVVLNLVANAVKFTES 400

Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G  ++   +  T+       I ++D G GI+E +   V   F Q  +++     G+GLGL
Sbjct: 401 GSIKILTFIDKTADHDALLRIEVQDTGIGISEEDREKVFKPFSQIDVSLTRQYSGLGLGL 460

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            I + I+    GQ    S    G      +P        P+ +
Sbjct: 461 AITKKIVEAMNGQIGFNSDKGVGSVFWIEVPVNFSNEIDPDPS 503


>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1209

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 8/260 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     K+ F+A +SHELRTPL +I G   ++    +G L        I    ++
Sbjct: 709 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKN 764

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ LIN+ILD+ +IE+G+       + L ++VR+ I   +   Q+ ++ I       
Sbjct: 765 SERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLP 824

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V+ D   + QVI NL+SNA+KF+  GG+V V +G        I++ D+GPGI     
Sbjct: 825 GVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFR 884

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473
             +   F Q   +    + G GLGL I+++I+  HGGQ    +    G      L    P
Sbjct: 885 DRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTTFYVDLAEYRP 944

Query: 474 NTRVLNFIPEDNHESTQYKC 493
           NT     +P  +       C
Sbjct: 945 NTNTTVSLPPQSDRPRILIC 964


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1431

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 151/307 (49%), Gaps = 5/307 (1%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P +       ++  +  +I L  +       FT     +     ++ S   E   L    
Sbjct: 983  PPLRGWLAAPLVGRNGQNIGLIQLSDKYDGEFTAADEAVLVQLAQMASVSVENVRLYEAE 1042

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            + A+S ++ +R+ AE  N  K  FLA +SHELR+PLN ILG+S +++    G L+    K
Sbjct: 1043 KQARSAAEASREEAEAANRIKDEFLAVLSHELRSPLNPILGWSRLLQN---GKLDEAKAK 1099

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  I R+ +  + LI ++LD+SRI  G+  L+ S I+L  +++  I  ++L A+  +I
Sbjct: 1100 QAVNIIERNAKLQVELIEDLLDISRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSI 1159

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
             I   +D  +  V  D   ++QV+ NLLSNAVKFT  GG V + +     + Q IS+ D 
Sbjct: 1160 RIEVNLDGEIGLVSGDSTRLQQVMWNLLSNAVKFTPTGGLVEIRLEQVGNQAQ-ISVSDT 1218

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467
            G GI+   IP V   F Q   A      G+GLGL I + ++  HGG     S+    G  
Sbjct: 1219 GKGISPDFIPYVFDYFRQADSATTRKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGAT 1278

Query: 468  VIAILPN 474
                LP 
Sbjct: 1279 FTLKLPL 1285



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 233 SLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +E RKRAE   E + AK+ F +++SHE RTPL  +L   E +         ++  ++
Sbjct: 312 QAYEEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLT---ADDLSQEQRQ 368

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  IHR+G  LL L+N +LD SRIEAGR +       L     E   + +   ++  ++
Sbjct: 369 EMTLIHRNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQ 428

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                +P    V+ D +   ++ILNLLSNA KFT   G + +T+     +   I++ D G
Sbjct: 429 FSVTCEPLPELVYVDRQMWEKIILNLLSNAFKFTFS-GAIALTLRQVQHQ-VEITVTDTG 486

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI + E+P +   F +   A    ++G G+GL + Q ++  HGGQ  + S    G    
Sbjct: 487 IGIPQAELPHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFT 546

Query: 470 AILPNTRVLNFIPEDNHEST 489
             +P    +  +P +  ++T
Sbjct: 547 ITVPMG--IAHLPPERIQAT 564


>gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 533

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLIES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + +    ++ +
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QVI N ++NA+KFT   G++ +     +       
Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  ++  V   F +      S  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518

Query: 464 EGVEVIAILPNT 475
            G       P  
Sbjct: 519 VGSRFWFTHPLR 530


>gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
 gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
          Length = 536

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 13/265 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +I + +  +    E +++AEE N  KS FLA+MSHE+RTPLN+I+GFS ++ +      +
Sbjct: 278 MIDKRKALEQDLREAKEKAEEANRLKSAFLANMSHEIRTPLNSIVGFSSILTMT----ED 333

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  KEY   I  +   LL +++++L+LS++EAG ++L  +   L D+V E     +++A
Sbjct: 334 MEEKKEYNQLIQHNNTLLLKVVDDVLELSKLEAGDFKLYPAWFCLSDLVVESAAECRMKA 393

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
               +++          V  D + +++++ N LSNA+K T   G + +        G  I
Sbjct: 394 DG-KLDVRVDKPEQDYMVELDAQYVKRILSNFLSNALKNT-QSGHIDIAYSMV-DGGVKI 450

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI + ++P V   F +      S  QGVGLGLPI +SI  + GG   + S++ 
Sbjct: 451 SVKDTGCGIPQDKLPVVFDRFEKVD----SFAQGVGLGLPICKSIAESMGGTIGVTSEVG 506

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
            G      LP        P+ ++E+
Sbjct: 507 AGTAFWVTLPCA--TAPTPQLHNEA 529


>gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia
           thailandensis MSMB43]
          Length = 1084

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/509 (21%), Positives = 181/509 (35%), Gaps = 57/509 (11%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLS 88
           +      +            L +A  G W     +          +  L      AA  +
Sbjct: 362 LRRDAPLAHRPYRAPRGTIGLGLAAAGVWMLSGVLGFEQYGLPTVVCGLAFAYSGAALFA 421

Query: 89  LGKKVMNSD-----IKIGEVYVWRIWLLVGQIAIGLCWTLLTL------VEPGTWTPEYL 137
             K           I     +     +L+     G  + L             T   +  
Sbjct: 422 WRKWEDRRRAGLPGIGDTLHFKLTGAMLLVLALDGAGYMLAISQIARKNGPMETALEDIF 481

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-----STQAIMSMHVLDIS---- 188
                 T+ + + +  +           +       L     +  A+    +        
Sbjct: 482 VAVAMLTVTVGIVLPGMIAHSADELSRAARRLATGTLKDFSNAMSALGRGDLDGAYANFA 541

Query: 189 --------------LAGMLATALSFFTYITYHLFKSNVKILSCQAE----KDDLIAELEV 230
                         +A       S        L  +   +   ++E      DL    + 
Sbjct: 542 PDRLRGHGGDELGRMAESFNMLQSEIGIAATGLGDAREGLRRARSELTNANLDLQRAHDS 601

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    +  +  +E N AKS FLA+MSHELRTPLNAILG+++            E     
Sbjct: 602 LEERVRQRTRELQEANRAKSIFLANMSHELRTPLNAILGYAQWFRR---DAAAGERQVRA 658

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I +SG+HLL LI +ILDL++IEAG+ +L      L  ++   + +++++++EK +  
Sbjct: 659 ASIIKQSGEHLLMLITDILDLAKIEAGKLDLCPGPAGLDGVLSSVMDIIRVKSEEKGLAC 718

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISI 405
                  L   VW D+K +RQV+LNLL NAVKFT+  GRV + V               +
Sbjct: 719 VLDAASDLPPSVWIDDKRLRQVLLNLLGNAVKFTSR-GRVELRVSLLQPADELARVRFEV 777

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA   + ++   F Q   A   A  G GLGL I++ ++   GG+  + S+   G
Sbjct: 778 RDTGVGIAHDRLTSIFDPFEQAGEAQSRA-GGTGLGLSISRQLVRLMGGEIEVESEPGAG 836

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQYKCY 494
                 L    V+   P     +     Y
Sbjct: 837 SRFWFDLELA-VVEVAPARAQPAQSITGY 864


>gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 614

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 166/362 (45%), Gaps = 13/362 (3%)

Query: 122 TLLTLVEPGT-WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
            +L L E    +  +   I  +A         AL N  +    F++   +++A+    I+
Sbjct: 255 GVLYLGEYSPIYNIDGEVIGMTAVGTPQTPFMALLNSTIQKIFFIAATSLLIAVLVAIIL 314

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-----KDDLIAELEVAKSLS 235
           +  ++        +  +         +       +   AE      +++    +  K  +
Sbjct: 315 NRKIIVPIKKLKNSAEIFGHGKYDERVHIETGDEIEELAESFNSMAEEISRSDQKLKKDA 374

Query: 236 DETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ +      +E +  KS  ++ +SHELRTPL +ILG+ ++++ ET G L NE  KE++ 
Sbjct: 375 NDLKHSYDELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKL-NEKQKEFVS 433

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  + + L  + + + DL  ++    +   + +++ + V E I  LQ  A  +NI + +
Sbjct: 434 VISENSERLKRITDNMSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNIILLE 493

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
            +D S   +  D+  + QV+ NL+ NAVKF+    +V VT G+      ++ I D GPGI
Sbjct: 494 DVDDS--YIKGDKSKIHQVLANLIENAVKFSKKQTKVTVT-GFEDNGNIHLEITDQGPGI 550

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  +  +   F Q   + K    G GLGL + + I+ +HGG   + SK+ +G  V  + 
Sbjct: 551 PKEHLDKIFDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLF 610

Query: 473 PN 474
           P 
Sbjct: 611 PL 612


>gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217]
 gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217]
          Length = 1659

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I E    +      ++ A+  + AKS FLA+MSHE+RTP+NAILG  ++++   M P
Sbjct: 873  NRDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDMTP 932

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  ++Y+     + Q LL L+N+ILD S+I+AG+  +     SL +I+RE  ++L  
Sbjct: 933  ----QQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAA 988

Query: 342  RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSG 398
              + K+IE+   +DPS+   V AD++ ++QV+LNL  NA+KFTA G  +     +  +S 
Sbjct: 989  NMRRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSH 1048

Query: 399  R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +    IS+ D G GI   ++  +   F Q   +      G GLGL I + ++   G +  
Sbjct: 1049 KVRLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELE 1108

Query: 458  IRSKLREGVEVIAILPNTRVLNFI 481
            + S+  +G      +    V   I
Sbjct: 1109 VESQEGQGSRFWFDIEFELVETPI 1132


>gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 631

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 29/372 (7%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                    I+ +   ++  +   +                  A++   +    V + + 
Sbjct: 156 AHNQLFSQGIFIALIEMLLSAGLMILLGYFLTRHLAGLTQASEAVAAGNLTPPPVPEGND 215

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                 A   F  ++  + +  +++ + + E+  L               + AE    AK
Sbjct: 216 EVGRLGAA--FNAMSRAVAERILELTASRDEQARLA--------------RSAETAARAK 259

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLA+MSHE+RTP+N ILG +E+    T+     E  +EY+  +  SG +L+ ++N+IL
Sbjct: 260 TSFLATMSHEIRTPMNGILGMTEL----TLATDLTEEQREYLTWVKSSGDNLMRVLNDIL 315

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           D S+I AG   L    + L  ++   + +    A  K + ++   D  L   +  D   +
Sbjct: 316 DFSKINAGELNLEHIPLDLSSLLDSVVALYSSVAANKGLRLYWAADTELPEHLLGDPVRI 375

Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTS 423
           +QV+ NLLSNA+KFT  G   + V    T         + ++ D G GI   ++  +   
Sbjct: 376 QQVLNNLLSNALKFTEHGEVAIRVHCEKTLENSKVWRVHFTVADTGIGIPASKLGNIFDP 435

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP- 482
           F Q          G GLGL I + ++    G+  + S + EG     ++   +     P 
Sbjct: 436 FAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESAVGEGTRFHLLIHLDQAEKSTPK 495

Query: 483 --EDNHESTQYK 492
             E + E+ Q K
Sbjct: 496 IAELDKEAAQCK 507


>gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 836

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 20/334 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +  +   +     +  A       +     +  L      +          I EL+  ++
Sbjct: 372 VVARVFSTRQAESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRDITELKRLEA 431

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            S +  + AE+ N AKS FLA+MSHE+RTP+N ++G  ++     +    + + + Y+  
Sbjct: 432 ESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMGMLDL----ALMNNPDPSVRSYLQM 487

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
             +S  HLLN++N+ILDL+RIEAGR E+      +          + L A++K +     
Sbjct: 488 GKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAEKKGLRFSAV 547

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----------- 401
           I   +   +  DE  + QV  NL+ NA+KFT   G + V V                   
Sbjct: 548 IASDIPSRLIGDEGRLIQVFTNLIGNAIKFTTK-GEITVKVTVARPTDIGMQEACPHTDA 606

Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              + SI D G GI   ++  +  SF Q    +     G GLGLPI++ ++    G+   
Sbjct: 607 ICMFASISDTGIGIPADQLEKIFESFAQVRGDLHLQHFGTGLGLPISRQLVELMDGKIWS 666

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            S+L +G      +      N  PE      + K
Sbjct: 667 ESELGKGSTFYFTVTLQEAPNAQPETRPPRRKSK 700


>gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 599

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  + +  + +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++E       + 
Sbjct: 360 ITQLKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGFSSMLEE----AEDQ 415

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +YI  I  + + LL LI++ILDLS+IEA  +++    ++   +  +    +Q++  
Sbjct: 416 EEKHQYITIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQLCNDLFQAIQMK-T 474

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  K +    +  +D+  + QV+LN ++NA+KFT+  G + +      G     S
Sbjct: 475 SPQVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQI-DGNEVKFS 532

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F +      S   G GLGL I QSI+   GG+  + S+  +
Sbjct: 533 VQDTGMGIEPEKQEAIFTRFVKL----NSFIPGTGLGLSICQSIVTQLGGKIGVESEPGK 588

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 589 GSCFWFTHP 597


>gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
 gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
          Length = 617

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 149/277 (53%), Gaps = 5/277 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++SHEL+TPLN I  
Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 378 AVQILDLYKKDANSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V E  + +   A+ KNI I    D     +  D   + ++ILNLLSNA+KFT  GG +
Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +V +         IS+KD G GI + +I  +   F Q    ++  ++G G+GL + +S +
Sbjct: 498 YVNIK-DCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFV 556

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   I+S + +G E I  +P   V     ++N+
Sbjct: 557 NMHEGNIDIQSVIGKGSEFIINIPVKLVKEDSEKENN 593


>gi|171060040|ref|YP_001792389.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777485|gb|ACB35624.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 762

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 14/300 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +   + K  +     +  ++ L A +E   +   + +  AE  NLAK  FLA+MSHE
Sbjct: 338 WVGVAVDITKLKLAEAELERHRNHLEAMVEERTAALSDAKLAAEAANLAKGSFLANMSHE 397

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G S ++  +   P   +     +G I  SG+HLL +IN+ILDLS+IEAG++
Sbjct: 398 IRTPMNAIIGLSALLLRKPQEPDTADK----LGLIEASGKHLLGIINDILDLSKIEAGKF 453

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            LS+  + +  +      M+   A  K I++  ++D     +  D   + Q +LNL+SNA
Sbjct: 454 HLSQERLDVRVLPVNVCSMVAEAAHAKGIKLKTELDFLPPRLLGDLTRITQALLNLVSNA 513

Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT   G V V                 + D G GI+   +  + + F Q   +     
Sbjct: 514 IKFTRT-GSVTVRAVREEEDQDSILLRFEVIDTGIGISAQAMSRLFSPFEQADASTVRNF 572

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-----VLNFIPEDNHESTQ 490
            G GLGL I + +    GG     S L EG      +   +     + + +P +N  + Q
Sbjct: 573 GGTGLGLVITRRLAQLMGGDAGAASVLGEGSTFWFTVRLKKTDVENLDSTMPTENAAAVQ 632


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 10/319 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           ML  A+F +   +V+A      +     +  +                 L  S+      
Sbjct: 150 MLKIAIFGALLGIVMATVLSIFLFRKFTNPLIEMEKTAKAIAEGDFGKQLNVSSDD---- 205

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E   L   L    +   E     E  +  +   ++ +SHELRTPL  I GF+E +   
Sbjct: 206 --EVGRLALSLNRMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDG 263

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +   + E  K Y+ +I      L +L+N+IL L  +E G  E     + L  +V   + 
Sbjct: 264 IV--KSKEQEKFYLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVE 320

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            ++  A  K   +     P   +V+ +   ++QV+ NL+ NA+  +  GG V V +G   
Sbjct: 321 RMKQIASAKKTIVKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLRE 380

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +I++KDNGPGI + E+  +   F +   +      G GLGL I + I+  HGG+  
Sbjct: 381 -GFAFIAVKDNGPGIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVT 439

Query: 458 IRSKLREGVEVIAILPNTR 476
           + S+L +G      LP + 
Sbjct: 440 VESELGKGATFTVFLPLSE 458


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 4/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +  G   +E  KE    I+     +  
Sbjct: 360 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAG--TDEEKKELASVIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+EAG   L+    +++  V +     Q  A+EK+I +  +++     +  
Sbjct: 418 LVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSRVEGDGV-IQM 476

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QV+ NL+ NA++ TA  G + +     +     I +KD+G GI E ++P V   
Sbjct: 477 DVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNG-VKIDVKDSGHGIPEEDLPFVFER 535

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL I ++I+  H G   + SK  EG      +P  
Sbjct: 536 FYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIPQK 587


>gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
 gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
          Length = 1323

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 154/256 (60%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I   + A+     T+  AE  N  K++FLA +SHE+RTPLNAI+GFSE++  E +G +
Sbjct: 1065 RDITHWKKAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERLGRI 1124

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +N+ Y+ Y+ DI+RSG H+L+L+N++LD+++IEAG+ E+   A+ L   V E + +LQ  
Sbjct: 1125 DNDRYRGYLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAILQAE 1184

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A    I I   +   +  V AD++ MRQ++LNL+SN++KFT  GG+V V+  +       
Sbjct: 1185 ANADRIIIRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSGEVV 1244

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + ++D G G++  E+   L  F Q + A  SA +G GLGLP+ ++++  +   F I S  
Sbjct: 1245 LRVRDTGVGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIESTP 1304

Query: 463  REGVEVIAILPNTRVL 478
             EG  V    P  RVL
Sbjct: 1305 DEGTLVEIHFPVQRVL 1320


>gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1154

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 159/335 (47%), Gaps = 9/335 (2%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
             + A+LL+ ++   + N  L   ++    P  +  +     +M  L  +L  +      
Sbjct: 582 FGRFASLLLVIN---IINAALMMLIYRQMAPSSLNEAVLLKDTMLALFFTLLIVSGVLSW 638

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F         +  +      +    I   +         +++AE  N AKSR+L  +SH
Sbjct: 639 LFVLAHESRVVAQKESNRQTRKLIREIDAHQETDRALQNAKEQAERANEAKSRYLTGISH 698

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL +I+G+++++  +   P     ++  +  IHRSG +L +LI  +LD+S+IEAGR
Sbjct: 699 ELRTPLQSIIGYAQLLSEKANTPSG---HQNGLDIIHRSGLYLADLIEGLLDISKIEAGR 755

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
           ++L  + + L  ++ +   M  ++A++K I++  KI   L   V  DEK +RQ+++NLLS
Sbjct: 756 FDLYRNTVDLPKLIDQLNSMFAMQARDKGIQLQSKILAPLPQHVVTDEKRLRQILINLLS 815

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVK+T   G V   V +   +     I+D G GI EG +  +   F +          G
Sbjct: 816 NAVKYTPK-GSVLFEVNYR-NQVAEFVIRDTGVGIKEGHLKRIFDPFERVRDVSTGNLPG 873

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I + +    GG     S + EG E    L
Sbjct: 874 TGLGLTIVKLLTEIMGGDIQAHSVVGEGSEFRVSL 908


>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 624

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 7/241 (2%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHE+RTPLN +LG ++++ L  +    N+  KE++  I  SG+ LL++I +IL
Sbjct: 243 SQFLANMSHEIRTPLNGVLGIAQLLALTDL----NDRQKEFVQTIRSSGRALLSIIEDIL 298

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           DLS+IEAG+ +L +  +   D++ E +      A+ K + +     P LS V   D   +
Sbjct: 299 DLSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRV 358

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ++ NLL NA+KFT   G V V   WT      + + D GPG++E     V   F Q  
Sbjct: 359 RQILSNLLGNAIKFTET-GEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQAD 417

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHE 487
           ++   + +G GLGL IA+ ++   GGQ  + S+  +G       P     L+  P++  +
Sbjct: 418 MSHSRSHEGSGLGLAIARELVVLMGGQIGVHSRPGQGACFWFEFPARPADLDDEPQETAQ 477

Query: 488 S 488
           S
Sbjct: 478 S 478


>gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 513

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 263 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 321

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  ++ +     Q    
Sbjct: 322 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 380

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H   T+   +     
Sbjct: 381 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGYTLDNRNADSVQ 439

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +  +  +   F +      + +QG GLGL I ++I+ +  G   ++S++
Sbjct: 440 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 495

Query: 463 REGVEVIAILPNTRVLN 479
            +G      LP  R   
Sbjct: 496 GKGSCFTVTLPFDRKTE 512


>gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 513

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 263 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 321

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  ++ +     Q    
Sbjct: 322 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 380

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H   T+   +     
Sbjct: 381 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGHTLDNRNADSVQ 439

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +  +  +   F +      + +QG GLGL I ++I+ +  G   ++S++
Sbjct: 440 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 495

Query: 463 REGVEVIAILPNTRVLN 479
            +G      LP  R   
Sbjct: 496 GKGSCFTVTLPFDRKTE 512


>gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 499

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI++ILDLS+IE+   + + S  SL  ++ +     Q    
Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H   T+   +     
Sbjct: 367 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGYTLDNRNADSVQ 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +  +  +   F +      + +QG GLGL I ++I+ +  G   ++S++
Sbjct: 426 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 481

Query: 463 REGVEVIAILPNTRVLN 479
            +G      LP  R   
Sbjct: 482 GKGSCFTVTLPFDRKTE 498


>gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
 gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
          Length = 589

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHEL+TP+ +I GF+E +    M   + +   +++  I +  + 
Sbjct: 352 ELKKLEQVRKDFVANVSHELKTPVTSIKGFTETLLDGAM--HDEQLRDQFLHIIWKESER 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +LI+++L+LS+IE   ++L+    +L  +V E + +L+ +A+EK I+I    + S   
Sbjct: 410 LQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSF-D 468

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D + ++Q+ +NL++NA+ +T+ GGR+ + +    G      + D G GI E EIP +
Sbjct: 469 LEGDPERLKQIAINLVNNAITYTSNGGRIDLALK-DHGDVVEFEVNDTGIGIRESEIPRI 527

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A      G GLGL I + ++  H G+ L+ S+  +G          R    
Sbjct: 528 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQGKILVESEFGKGTTFTIQFHRYRDDEE 587


>gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1148

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 148/316 (46%), Gaps = 6/316 (1%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L   ++    P   + +     +M  L  +L  +       F         +  +    
Sbjct: 594 ALMLLIYRQMSPETPSEAILLQDTMWALFFTLLIVSGVLSWLFLLAHESRVVAQKESNRQ 653

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +    I   +       + ++ AE  N AKSR+L  +SHELRTPL +I+G+++++  +
Sbjct: 654 TRKLVKEIDAHQETDRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSDK 713

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              P     ++  +  I RSG +L +LI  +LD+S+IEAGR++L  + + L +++ +   
Sbjct: 714 KDAPT---QHQNGLDIIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQLES 770

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           M +++A+ K IE    I   L   V  DEK +RQ+++NLLSNAVK+T   G+V   + + 
Sbjct: 771 MFEMQARGKGIEFELNIRAPLPRLVITDEKRLRQILINLLSNAVKYTQK-GKVTFDINYR 829

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +     I D G GI E  +  +   F +      +   G GLGL I + +    GG  
Sbjct: 830 -NQVAEFHIVDTGVGIKEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGDL 888

Query: 457 LIRSKLREGVEVIAIL 472
             RS++  G E    L
Sbjct: 889 KARSEVGSGSEFTVSL 904


>gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 467

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 154/396 (38%), Gaps = 13/396 (3%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIW-LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
             +   + + +          W          + G      T   P   T     +   +
Sbjct: 77  LPVEWQRPLDDEGGTPPPRETWERRGFFSLADSQGKVLVSGTPEYPLNETLNQQALKDGS 136

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY- 202
            + +                        +    QA++      + +A ++   L+     
Sbjct: 137 PITVNGETVGFLLSPRRLVNLRPEEARFLTRVNQALVIGGAGALLIALIIGIFLARTLTR 196

Query: 203 ----ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +T    +     L  Q E        ++A++ +  +++ A   N  + +  A ++H
Sbjct: 197 PIKDLTLAATRMAQGELEQQVEVRSQDEIGQLAQAFNLMSQQIA-RANQLRRQMTADIAH 255

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           +LRTPL  I G+ E +    + P       + +  I++  + L  ++N++  LS+ +AG 
Sbjct: 256 DLRTPLTVIAGYIESMRDGVLQPTP-----QRLDLIYQEIERLQKMVNDLRMLSQADAGE 310

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L       + +++    + Q  A++  I +  +   +L ++  DE  M QV+ NL+SN
Sbjct: 311 LNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLPAILVDEDRMMQVLDNLISN 370

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+++T+ GG + +      G+   + + D G GI   E+P +   F +   +  S   G 
Sbjct: 371 ALRYTSAGGEITLRAKQ-DGKQVRLQVADTGTGIPSEELPRIFERFHRVDPSRHSESGGS 429

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLGL I ++++   GG+    S+L +G  +    P 
Sbjct: 430 GLGLAIVRALVEAQGGKVSAESELGKGTTITTEFPA 465


>gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1022

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 10/253 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D I + E       + +  AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++      
Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    Y+  I+ + + LL LIN+ILDLS++E+G  EL      L +        ++
Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            R     +++      S+  V  D+  + QV+ N ++NA+K+T   G + +        G
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVV-DTG 795

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D G GI E +   V   F +         QG GLGL I ++I  + GG     S
Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851

Query: 461 KLREGVEVIAILP 473
           +   G    A+LP
Sbjct: 852 EYSRGSLFWAVLP 864


>gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +     RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+K T   G V V + 
Sbjct: 826 LKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKVAIS 884

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S   +G      
Sbjct: 945 LVTLMGGRMWVESDAGKGSVFYFT 968


>gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 463

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 140/309 (45%), Gaps = 21/309 (6%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE--------VAK 232
               + I LA +L   L F   +     +  V+ ++   E    IAE             
Sbjct: 158 QFGEMRIFLAILLILTLGFSFLLVAASTRMIVRPVTTLTEATKKIAEGNYRIQLNTSRQD 217

Query: 233 SLSDETRK------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            + +  R         E     +  F++++SHE+++PL +I GFS+ +  E++     E 
Sbjct: 218 EIGNLARHFSMMANSLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTLRTESL---PEEE 274

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y+  I    + L +L  ++L L+ ++     L ++   +   +RE + ML+   ++K
Sbjct: 275 REQYLSIIENESRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDK 334

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + I   + P+   + AD K + QV  NLL+NA+KFT  GG + VT+      G  + ++
Sbjct: 335 ELAIKTDLPPT--RIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVR 392

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKS--AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           D G GI   ++P +   F +   +      E G GLGL + + ++  HGG   + S+   
Sbjct: 393 DTGVGIPGEDLPHIFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGA 452

Query: 465 GVEVIAILP 473
           G  +   LP
Sbjct: 453 GTGIRVWLP 461


>gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1172

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSRFLASM 256
              L     ++     + ++    LE  K+     ++       R E+ +  KS FLA+M
Sbjct: 433 QARLQSHQAELEQTNTQLEEYAQRLERQKAELVSAQQSLSANAARLEQTSRYKSEFLANM 492

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+ L  + +++    G L +E    Y   IH S   LLNLIN+ILDLS++EA
Sbjct: 493 SHELRTPLNSSLILARLLQENRGGNLTDEQV-HYAQTIHSSNSDLLNLINDILDLSKVEA 551

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G   +    + L  ++R    M    A+ K + +     P    ++  D + + Q++ NL
Sbjct: 552 GHIVMEPETVVLDTVMRSMREMFSPIAEGKALTLTITRAPGTPGTIVTDHQRLVQILRNL 611

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA+KFT   G V + +           ++D+G GIA  ++  +  +F Q   +     
Sbjct: 612 LSNALKFTER-GEVALGISVDGAGEIRFEVRDSGIGIAADKLEMIFEAFQQADGSTSRHY 670

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G GLGL I++      GG+  + S+   G      LP    +     D     Q 
Sbjct: 671 GGSGLGLSISRKFAELLGGRIDVVSEPGAGSVFTLRLPLDLAMPAAALDPARDAQQ 726


>gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 607

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F+A++SHELRTPL  +  + E +        + E    ++       + ++
Sbjct: 371 EKIDMERREFVANVSHELRTPLTTMRSYLEALAEGAW--RDEEIAPNFLDVTQNETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y L++     I      I   ++  +++N+   +K+    + V 
Sbjct: 429 RLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFEMT-KQQNVTFERKLPDHSAFVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG+V  ++         +S+ D G GI +  I  +  
Sbjct: 488 IDEDKLTQVLDNIISNALKYSPEGGKVTFSIE-EKDEFIVVSVSDQGVGIPKENIDQIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG+    S   +G  +   LP  R   
Sbjct: 547 RFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEGKGTTISFSLPYVRSEE 603


>gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
 gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
          Length = 587

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 17/243 (6%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K  F+A +SHELRTPLNAILG+S+++     G L++E  ++ I  I R+ +    LI
Sbjct: 166 NRMKDEFIAVVSHELRTPLNAILGWSQLL---IGGKLSSERTQQAIQTIERNARMQAQLI 222

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            +IL+++++  G+  LS  +++L D++   +  +Q  A+ K + +  ++DP    V AD 
Sbjct: 223 GDILEMTKLTQGKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLDPLPRWVNADP 282

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGI 412
             +RQ+  NLL+NA+KFT  GG + V +                      ISI D G GI
Sbjct: 283 VRLRQIFWNLLTNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGI 342

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAI 471
           +   +P V   F Q   +   A+ G+GLGL I + ++  H G+  + S+   +G      
Sbjct: 343 SPEFLPHVFDRFRQADGSATRAQGGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTLH 402

Query: 472 LPN 474
           LP 
Sbjct: 403 LPL 405


>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
          Length = 927

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQ++ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYAGDPTRIRQILSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 927

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909]
          Length = 565

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + EL  + ++L ++    I  LQ +AQ K I+I  +I+  +  +
Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ +++   +V V V   +    Y+ I+D G GI+E +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  ++S+  +G     + 
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562


>gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens DM4]
          Length = 803

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPL+A++G+SE++  E       E   + +  I  S +HLL LIN++
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAGR  L+     ++ ++ +     Q    +K        +  L ++  D+  +
Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 406

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425
           RQ ++NL+ NA KF+   G + + V      G      S+ D G G+ + +I  +   F 
Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   +      G GLGL I ++ +   GG   + S   EG      LP
Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513


>gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 637

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 229 EVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   D  +  + AE  + AKS FLA+M+HELRTPL AI+GF+EV+         N+T
Sbjct: 244 ERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAIIGFAEVLRRSR---NLNKT 300

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +G I  +   LL+++N++LD SR+EAG  EL  +      +   C  ++  RA+ K
Sbjct: 301 AARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDPAAMASSCAGLVAERAEAK 360

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--- 403
            + +  +    L  +  D   + QV+LN LSNAVKFT   G + V +  T    Q +   
Sbjct: 361 GLAVEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFT-SHGAITVALRQTIDGDQAVLRG 419

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA      +   F Q   A+     G GLGL I++ I+    G+  + S   
Sbjct: 420 EVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISRRIIERMDGRIGVDSVEG 479

Query: 464 EGVEVIAI-------LPNTRVLNFIPEDNH 486
           +G             LP    +   P D  
Sbjct: 480 QGSTFWFEVRGPLADLPTQEAVETSPLDAD 509


>gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata]
          Length = 1329

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G +++  
Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L  RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+KFT   G V   + 
Sbjct: 826 LKSLASRANERKLNLAYDVSYKVPGYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKAAIS 884

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S + +G      
Sbjct: 945 LVTLMGGRMWVESDVGKGSVFYFT 968


>gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 803

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPL+A++G+SE++  E       E   + +  I  S +HLL LIN++
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAGR  L+     ++ ++ +     Q    +K        +  L ++  D+  +
Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 406

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425
           RQ ++NL+ NA KF+   G + + V      G      S+ D G G+ + +I  +   F 
Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   +      G GLGL I ++ +   GG   + S   EG      LP
Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513


>gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1339

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 180/456 (39%), Gaps = 30/456 (6%)

Query: 54   LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL--GKKVMNSDIKIGEVYVWRIWLL 111
            L  L+ A  G ++          L  +  Y        G      +  +G+       + 
Sbjct: 569  LTPLVAAQYGAFYLAEDGPAGTVLTLVGSYGRPAGADEGTGFALGESLVGQAARSHRIIA 628

Query: 112  VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
              Q+  G   +   L      +   L I     +L  + +++ + F   +  FL      
Sbjct: 629  TDQVPGGYVISS-GLGHTTPGSLIILPIVVDDQVLGVIELASFTAFTPVHRDFLGQLMET 687

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKILSCQAEKDDLI 225
            + ++   I++    D  L                       L +SN ++    A      
Sbjct: 688  IGVNVNTIVANARTDELLGESQRLTGELQARSEELQVQQEELQRSNAELEEKAALLASQN 747

Query: 226  AELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +++E      ++ R+  E         +  KS FLA+MSHELRTPLN++L  ++++    
Sbjct: 748  SDIEAKNLQIEQARQELEARAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNP 807

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               L      EY G IH +G  LL LIN+ILDLS++EAG+ +++   + L  ++      
Sbjct: 808  TRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDAT 866

Query: 339  LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394
             +    +K+++      P   + +  D+  +RQ++ NLLSNAVKFT  GG V + +    
Sbjct: 867  FRPMTTQKSLDFTVTTAPDAPADLLTDDSRLRQILRNLLSNAVKFTERGG-VELRIEPAA 925

Query: 395  --------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                       G      ++D G GI E ++ +V  +F Q          G GLGL I++
Sbjct: 926  GSEIPAGLRRRGAIVAFRVRDTGIGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISR 985

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             I    GG     S   +G      LP +   +  P
Sbjct: 986  EIAQLLGGAVTAESTPGQGSTFTLYLPVSWADHEEP 1021


>gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 911

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 133/250 (53%), Gaps = 15/250 (6%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R R  E +  K+ F+ ++SHELRTP+ +I GF++++ +  +GPL NET KE++G I  + 
Sbjct: 662 RTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPL-NETQKEFLGIIQSNA 720

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + ++ +IN++LD+++IE G  EL    + + + +   ++ LQ + Q++   +   I   L
Sbjct: 721 ERMIAIINDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAGL 780

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------SGRGQYIS 404
             V AD +   Q++ N++SNAVK+T  GG + V                    GR   I 
Sbjct: 781 PLVRADARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQID 840

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GIA  ++P +   F +    +K    G GLGL + + ++   GG+  + S + E
Sbjct: 841 VRDTGVGIAPEDLPRIWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVESCINE 900

Query: 465 GVEVIAILPN 474
           G     ++P 
Sbjct: 901 GSVFSFVIPA 910


>gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1896

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 151/348 (43%), Gaps = 24/348 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             + +++L  F + +  FL      + +    I +    +  L       +         L
Sbjct: 1122 VIELASLHAFSVTHVSFLEQLTQSIGVVLNTIEATMRTERLLQQSQQLTV-ELQSQQKEL 1180

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHEL 260
             ++N ++     +  +   E+E   +  ++ R+  EE    LA     KS FLA+MSHEL
Sbjct: 1181 TQTNEELAQKARQLAEQNVEVERKNTEVEQARRALEEKAAELALTSKYKSEFLANMSHEL 1240

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN+IL   + +     G L      ++  +IH SG  LLNLI +ILDLS+IE+G   
Sbjct: 1241 RTPLNSILILGQQLAENATGNLTT-KQIDFARNIHSSGTDLLNLITDILDLSKIESGTVT 1299

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
            +    IS   +        +  A+ KN+ +      +L   +  D K ++Q++ NLLSNA
Sbjct: 1300 VEAEEISFSSLRDAIERNFRHIAEAKNVPLEVDFASTLPRAITTDPKRLQQILKNLLSNA 1359

Query: 380  VKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQ 426
             KFTA  G+V V V                       +I+D G GIA  +   +  +F Q
Sbjct: 1360 FKFTAQ-GKVAVRVFPALSGWVQGHPVLSRATHVIAFAIQDTGIGIAPEKQKLIFEAFQQ 1418

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                      G GLGL I++ +    GG+  + S  REG      LP 
Sbjct: 1419 ADAGTSRKYGGTGLGLSISRELATLLGGEIRLNSTPREGSTFTLYLPL 1466


>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 927

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|167648714|ref|YP_001686377.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351144|gb|ABZ73879.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 593

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 175/448 (39%), Gaps = 23/448 (5%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
             +      +  +  +++A +   F       +W     A       L  + +    +  
Sbjct: 28  ALARRGNLYLRVVATVMIALMLQVFIGMSWTWIW-AGVYAAAQLLELLLIRALVHRPQAR 86

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
                RI + V  +     +  L L         +        L  AL    + N  L  
Sbjct: 87  RGRALRIAVAVMPVVTSAIFGFLAL-PLFASHERFAPTLGGLLLAGALLNVIIVNSSLRS 145

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A   +  P V+ L    +++      +              I+  +    ++       +
Sbjct: 146 ATLSAAAPHVIYLLIVPLVARTANPDARLANALWLGVGLLIISVFVAARTLERALRAEAE 205

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               AE              AEE   AKS F+A +SHELRTP++AIL  +  +  +    
Sbjct: 206 AKEEAERRR---------HEAEEAVAAKSAFVAMISHELRTPISAILAGAARLHSDV--- 253

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   K +   I  +G  +  L+N++LDLSR++AGR  + +S   L   + + + + + 
Sbjct: 254 -PDAASKSHAQLIADAGAMMRTLLNDLLDLSRLDAGRMAVDQSPFDLRQAMADTLRLWRP 312

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            AQ K + +  +   +L   V  D   +RQV+ NLLSNA+KFT   G V V +       
Sbjct: 313 DAQRKGLRLRVEGAANLPRWVAGDSLRLRQVLNNLLSNAIKFTPR-GAVTVRLAARDEGE 371

Query: 401 QYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             I    + D GPG+ E ++  + T F Q + ++     G GLGL I++ +    GG   
Sbjct: 372 HLIFEAIVADTGPGLTEEQLSRLFTPFDQLASSVVREHGGSGLGLVISRELTRLMGGDLT 431

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDN 485
           + SK  +G      +   RVL   PED+
Sbjct: 432 VTSKPGKGSRFRLQI---RVLAAEPEDD 456


>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 922

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 255 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 312

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 313 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 372

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 373 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 425

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 426 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 481

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 482 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 541

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 542 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 600

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 601 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 660

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 661 TVALPLREA 669


>gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 619

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 383 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWKDPNIAPQ--FLTVTQEETERMI 440

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  Y L +  +   +     I   +  ++E+N+   +        V 
Sbjct: 441 RLVNALLQLSKMDSTEYRLMKEWVDFTEFFNNVIDRFE-MSKEQNVIFNRSFSKKARFVD 499

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG +   +    G    IS+ D G GI +  +  +  
Sbjct: 500 MDTDKITQVLYNVISNALKYSPEGGTITYRL-RDRGDMLEISVSDQGMGIPKENVDKIFE 558

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  +   
Sbjct: 559 RFYRVDKARSRQMGGTGLGLAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLPLAKEEE 615


>gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 835

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 191/460 (41%), Gaps = 25/460 (5%)

Query: 27  YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
            P ++  +  ++   +E++  V         +        T      +   I L  Y   
Sbjct: 150 APMRLLDETTLLMQQIEAIETVGLQQKQLATISTTSQAMVTFLVGIGLNLAIILWTYYLI 209

Query: 87  L--SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
              ++ +    +D++   + +     L+  I   +   ++          ++L +  +A 
Sbjct: 210 CKETMKRNQAETDLQQNNLTLQEQTNLMQLILNSMSDGVIV----SDDKGKFLIVNPAAE 265

Query: 145 LLIALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALS 198
            +      +  +     + L  A  ++ FP       + +    V ++ +    +     
Sbjct: 266 QMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEG 325

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +  ++    K     L         I E + A+    + ++ AE  N AKS FLA+M+H
Sbjct: 326 IWITVSGTPLKDASGTLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNH 385

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG++++++     P      ++ +  IH+ G HLL LIN+ILDLS++E  +
Sbjct: 386 ELRTPLNGILGYAQILQR---DPATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQK 442

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +L        + +   + + +++A++K I          ++V AD+K +RQV+LNLLSN
Sbjct: 443 MDLYPQDFHFANFLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSN 502

Query: 379 AVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           A+KFT   G V  TV   S               ++D G GI   +  T+   F Q    
Sbjct: 503 AIKFT-DFGSVKFTVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGK- 560

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
                +G GLGL I+Q I+   G    + S   +G +   
Sbjct: 561 RDRNSEGTGLGLAISQQIVQMMGSSIQVNSTPGKGSKFWF 600


>gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 982

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 143/256 (55%), Gaps = 9/256 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +       +    AE  N AKS FL++MSH++RTP+NAI+GF+ +         N +
Sbjct: 448 TADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNKK 504

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL D++ +   ++  +   
Sbjct: 505 MVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHA 564

Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399
           K +E++   +D +   V+ D+  + Q++LNLLSNA+KFT  GG + V +          +
Sbjct: 565 KQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQ 624

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KDNG G++E  +  + + F +   +  S  QG GLG+ I ++I+   GG   I+
Sbjct: 625 LYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQ 684

Query: 460 SKLREGVEVIAILPNT 475
           ++  +G E I  LP  
Sbjct: 685 TEQGKGTEFIVRLPLR 700


>gi|163795844|ref|ZP_02189808.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
 gi|159178877|gb|EDP63413.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
          Length = 700

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 193/463 (41%), Gaps = 24/463 (5%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQ-NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100
             ++ R + +  L   ++  +       + +    + +  AV  A +  G +++      
Sbjct: 244 AAAMTRKARVDALLNGILGGLVAITASCHAVSAGEAAVIGAVGGALVPPGVRLLERLRID 303

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
             V        +    +   W  L +   G          +   +     +   +     
Sbjct: 304 DAVG------AIPVHLLAGIWGTLAVALFGDPEILGRGWMEQLQIQAIGVVGIGAFAFAA 357

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSC 217
             V L    +V  L          L+ +     +        +  H     +     +  
Sbjct: 358 AYVLLKAINLVSPLRVSVDGERVGLNAAEHEASSAMQDLIVSMEDHFRSGRMDDPIPVEI 417

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEE--------------NLAKSRFLASMSHELRTP 263
            +E + +  +     +   E  +R E+               N AKS FLA+MSHELRTP
Sbjct: 418 GSEVEPVARQYNRVVARVREDTRRMEQSVEALASAKSEAEAANRAKSAFLANMSHELRTP 477

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNA++GFS+++  E  G L ++ YK Y  DI  +G+HLL L+N++LD SRIEAG+ EL E
Sbjct: 478 LNAVIGFSDLLGNEPFGKLGDDRYKTYAEDIRMAGEHLLTLVNDLLDHSRIEAGKVELHE 537

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + +  +VR    M++  A+ + + +   ID  L  + ADE+ +RQV+LNL+SNAVKFT
Sbjct: 538 IDVDVRAVVRRVGRMMEDLAKNRGLTLDLHIDADLPRLHADERLVRQVLLNLVSNAVKFT 597

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGRV V           + + D G G+  G+I   +  F Q +     +  G GLGLP
Sbjct: 598 QSGGRVEVVGRLEPDDRIALVVADTGIGMDRGDIARAMEPFVQLNDRYDKSYGGTGLGLP 657

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           +  S++  HGG   + S    G  V    P  R L    +   
Sbjct: 658 LVNSMVRLHGGTLTVDSMKGHGTTVSVRFPEARTLRLSVDAAD 700


>gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 773

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 138/271 (50%), Gaps = 11/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +   ++TR    E + AKS FLA MSHE+RTP+N++LG +E +    +    +
Sbjct: 365 ITEHRRLR-ELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRTPL----S 419

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE +  +  SG+ LL+LIN+ILDL+R+E G+  L+ +  ++  +V     ML L+A+
Sbjct: 420 AEQKECMDVLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSLQAR 479

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           +KNI +   I P +  +   D + ++Q+++NLL NAVKFT   G V + V          
Sbjct: 480 QKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAVKFT-DNGEVSLHVSRAPDAVHDG 538

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +++D G GI   E   +   F Q S AI S   G GLGL I++ ++   GG   + 
Sbjct: 539 DLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTIRLE 598

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S+   G  V        V        HE+ Q
Sbjct: 599 SEPGVGTTVTFTARFAAVPEETARTGHEAEQ 629


>gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 610

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 183/433 (42%), Gaps = 19/433 (4%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            +    L    + +   + +      +W   T            +++  ++        R
Sbjct: 163 AASSATLAAFGITSAALYASGLAYGAVWLARTNGALLNVEEERYRLLARNMSDVISRHNR 222

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
                           +  + P         + + A   +   +          A+  + 
Sbjct: 223 N-------------GAVRFISPAAENLLGTPVARLAEHGLFDRVHVADRPAYLKAMSDAA 269

Query: 168 FPVVVALS---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN--VKILSCQAEKD 222
                       +  ++        A            +  +L  +       +      
Sbjct: 270 RGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTAASNAGETEVVAVM 329

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E ++ +   D+ R  A+  + AKSRFLA+MSHELRTPLNAI+GFS++I  + +  L
Sbjct: 330 RDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLML 389

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  KEY   I+ SGQHLL+++N ILD+S++E+G +E+     +    +  C  +L L+
Sbjct: 390 GPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALK 449

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++  I++  +   +L  V  D +  +Q++LNL+SNA+KFT  GG V V+     G    
Sbjct: 450 ARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTRLV 508

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIAE ++  +   F Q     +   +G GLGL I +S++  HGG+  ++S++
Sbjct: 509 LRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQI 568

Query: 463 REGVEVIAILPNT 475
             G  V   LP  
Sbjct: 569 DCGTTVTVSLPLA 581


>gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1049

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 11/270 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  +E +  +      +++AE  + +K+ FL +MSHE+RTPLN I+G  +++    +  
Sbjct: 647 LEDFSERKRDQDALRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHSTGL-- 704

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +    EY G   +S + L+NL+ +ILDLSR+EAG+  +      L++  R+   + +L
Sbjct: 705 --SREQAEYSGAALQSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFKL 762

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
            + +  + +  ++  ++   V  D   ++QV+ NLL NA KFTA  G + +         
Sbjct: 763 TSAQSGVTLICELGENVPRRVIGDAIRLQQVLTNLLGNAFKFTAT-GSIVMAAHRLPDGP 821

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S+ D G GI + ++ T+  +F Q S       QG GLGL I ++++   GG 
Sbjct: 822 SKGYRILFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMGGT 881

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             I S+   G  +   LP     +  P  +
Sbjct: 882 MSIESEEGAGTTLYVALPFGAGDDEAPTAD 911


>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 992

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
            A S+ A   + L     ++F     A      +    L +   G+L   L +       
Sbjct: 154 TAASMLADEPYFLSLMDTITFRFDAEASQRIRFLQRLELVVLGCGLLVLFLEYLLVFRPT 213

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTP 263
           + +    + + + + + L       +   DE+ + AE     + AKS FLA MSHE+RTP
Sbjct: 214 VGRMTGMLTALRRQGEQLREANAKLRDSLDESIRLAELAKAADKAKSEFLARMSHEIRTP 273

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNA++G S ++    + P      ++Y+  I  S   LL +IN+ILD S+IEAG   +  
Sbjct: 274 LNAVIGMSHLLLKTRLTP----KQEDYLAKIRSSADTLLRVINDILDFSKIEAGGLTIER 329

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               L  ++ + + ++ L A EK +E    ++  +   +  D   + QV+LNL+ NAVKF
Sbjct: 330 IPFDLETVLGDVVNIMSLGAAEKQLEFLLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKF 389

Query: 383 TAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G V + V       Q      +++D G G+   +   +   F Q   +I     G 
Sbjct: 390 T-ESGEVLLEVRRQPSTSQNARLRFAVRDTGVGLTAEQQEGLFRPFSQADESISRRYGGT 448

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477
           GLGL I+Q ++A  GG   +RS   EG E      LP + V
Sbjct: 449 GLGLSISQRLVALMGGDLEVRSVPGEGSEFFFSLDLPLSEV 489


>gi|326791209|ref|YP_004309030.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541973|gb|ADZ83832.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 475

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 142/334 (42%), Gaps = 14/334 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVA------LSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           + +   +L  ++   F P+         LS    +   +L  + + ++   L        
Sbjct: 146 TVVGAVVLVTSIKDVFLPIQDMKNQIYLLSLVIALIAGLLSFATSSVITKPLKTLMKFVQ 205

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +    +        KD++         ++D+     +    ++  F++++SHEL+TPL+
Sbjct: 206 KITNGQLDQKVNVIGKDEIAELGNAFNHMTDQ----LQRVEQSRQEFVSNVSHELKTPLS 261

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I   +E +       +  E YKE+  DI+     L N+I+++L L R++     L+ + 
Sbjct: 262 SIKVLTESLM--FQEDVPVEMYKEFFEDINSEVDRLNNIISDLLTLVRLDQREIPLNIAN 319

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + + ++ +  +  L   A++K I++  +    + +   DE      + NL+ NA+K+T  
Sbjct: 320 VDINEMTQNILKRLTPLAKKKEIKLIYESHKDIIA-EIDEVKFTLALTNLIENAIKYTPS 378

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V V V  +  +  +IS++D G GIA+ E   +   F +          G GLGL I 
Sbjct: 379 GGEVGV-VIQSDLQDAFISVQDTGIGIAKEEQSRIFERFYRTDKTRNRETGGTGLGLAIT 437

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              +  H G   + S+  +G       P   V  
Sbjct: 438 YKTVIMHNGSIQVESEEGKGSVFSVQFPLRHVWE 471


>gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 580

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 290 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 349

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N   KEY   +  +   LL L
Sbjct: 350 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 406

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 407 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 465

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 466 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 525

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 526 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 574


>gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
 gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
          Length = 628

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +  K    + ++RAEE +  KS FLA+MSHE+RTPLNAI+GFS ++   T    +   
Sbjct: 387 HSQRHKKELIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETT----DTPE 442

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             EYI  I  +   LL LIN+ILDLSRIEAG  +   + + +   +R+     + R    
Sbjct: 443 NHEYIRIIEDNNYLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPA- 501

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N++   +       +  ++  + QV+ N  SNA+K+T   G + +             ++
Sbjct: 502 NVKCVTEFSMKKCYIHTEKNRLMQVLGNYFSNAIKYTNQ-GSITIGYYPPKNEKIRFYVR 560

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+  +  T+   F +        +QG GLGL I Q I         I S++ +G 
Sbjct: 561 DTGCGISPDKQQTIFQRFVKLDN----FKQGTGLGLSICQMIAEKMNATVGIHSEVNKGS 616

Query: 467 EVIAILPNTRV 477
           E     P   V
Sbjct: 617 EFWIEFPYQPV 627


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 161/468 (34%), Gaps = 38/468 (8%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN--SDI 98
           +     R   +  L    V    T    +     W       +        +        
Sbjct: 443 YWRGGTREGALAGLLAGFVVWAYTLMLPSVAKSGWLDPAFLEHGLFGIALLRPEQLFGLR 502

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLL------------------------TLVEPGTWTP 134
            +  +     W L   IA  L  +LL                          +       
Sbjct: 503 GLDNISHALFWSLTVNIACYLFVSLLRTPTGQEASQATLFVDVFRRGRTSPAMFWRGSAQ 562

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FPVVVALSTQAIMSMHVLDI 187
               +   A  L                              V  A +  A         
Sbjct: 563 VRDLLPLVARFLGTARAERAFTDYARQRGLAGIDQIQPDAGLVQFAETQLAGAIGSASAR 622

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +   +             +     ++ +   E ++    LE A +      +R +E + 
Sbjct: 623 VMVASVVQEEPLGLDEVMDILDEASQVRAYSHELEEKSRALESATAELRAANERLKELDR 682

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K  F++S+SHELRTPL +I  FSE++  +    L       ++G I    + L  L+N+
Sbjct: 683 LKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIAL--PDRMRFLGIIVSETERLTRLVNQ 740

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LDL++IE+G  E   S I +  +V + +       +++   +   +      + AD   
Sbjct: 741 VLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRGATVELVLPDEAPHLKADHDR 800

Query: 368 MRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           + QV+LNLLSNA KF   G GR+ V +   +G+   + + DNGPGI       +   F Q
Sbjct: 801 LVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQ-VRVEVSDNGPGIPPELHGVIFEKFRQ 859

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G        QG GLGLPI++ I+ + GG+  + S    G     +LP 
Sbjct: 860 GGDERSRP-QGTGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVLPL 906


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F++S+SHELRTPL +I G++E +    +   + E    ++  I +  + 
Sbjct: 357 RLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLEGALD--DREDAMNFLRIILQESEQ 414

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LIN++LDLS+IE+GR E   + +S+ D+V + + + +   ++K+I++  +I   L  
Sbjct: 415 LTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPP 474

Query: 361 VWADEKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V+AD+  +  V+ NLL NA+K+     GR+ + + + +     + ++DNG GI + ++  
Sbjct: 475 VFADKDYLEIVVRNLLDNAIKYVADDSGRIRI-IAFPANDMVRLEVEDNGAGIPQKDLGR 533

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A      G GLGL I + I+ +H G   +RS+   G      +P      
Sbjct: 534 IFERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIPVASPQQ 593

Query: 480 F 480
            
Sbjct: 594 Q 594


>gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC
            33331]
          Length = 1810

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1171 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGQVLGVIELA 1230

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1231 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1290

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1291 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1350

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1351 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1409

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1410 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1469

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++    G     S+ D G GIA  ++ 
Sbjct: 1470 AVKFTDSGAVELVIRPAGADVPNAIREHLLEAGSLRDADGDLIAFSVTDTGIGIASSKML 1529

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1530 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1585


>gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 566

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +++F+A++SHEL+TPL +I GF+E +        + +  ++++  I+     L  
Sbjct: 342 RLENMRTQFVANVSHELKTPLTSIKGFAETLR----YVDDFKNKEKFLNIINDEADRLTR 397

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ L LS IE+   E  E  I +  I+++   +++  A++KNI++    D  + ++  
Sbjct: 398 LINDTLTLSHIES-SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDK-VPNLKG 455

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D    +Q+++NL+ NA+K++   G V +     +     I ++D G GI++  I  +   
Sbjct: 456 DNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLENDNCI-IWVEDKGVGISKEHIDRIFER 514

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   A   A+ G GLGL I + I+    G   + S++ +G + I  +P
Sbjct: 515 FYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 564


>gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 561

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +++F+A++SHEL+TPL +I GF+E +        + +  ++++  I+     L  
Sbjct: 337 RLENMRTQFVANVSHELKTPLTSIKGFAETLR----YVDDFKNKEKFLNIINDEADRLTR 392

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ L LS IE+   E  E  I +  I+++   +++  A++KNI++    D  + ++  
Sbjct: 393 LINDTLTLSHIES-SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDK-VPNLKG 450

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D    +Q+++NL+ NA+K++   G V +     +     I ++D G GI++  I  +   
Sbjct: 451 DNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLENDNCI-IWVEDKGVGISKEHIDRIFER 509

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   A   A+ G GLGL I + I+    G   + S++ +G + I  +P
Sbjct: 510 FYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 559


>gi|256828313|ref|YP_003157041.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577489|gb|ACU88625.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 940

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/477 (22%), Positives = 195/477 (40%), Gaps = 30/477 (6%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           +  TG    +  P     DR I    V+ L     +   F +++ ++  +         W
Sbjct: 182 LRVTGIRALVLSPHITTIDRAIWINDVKVLGTGLLVGFFFTMVLIHLAIYLYTGNGKFKW 241

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
            ++    +A  ++L        I+          ++ G +A G    ++          +
Sbjct: 242 LVLGNLAFAGFVALTSYQHLFSIRNMPAA----IMMAGLMAQGFLACVIREFLELKKYNK 297

Query: 136 YL--TIYKSATLLIALSISAL-------SNFMLPYAVFLSFFPVVVALST----QAIMSM 182
            +   +     L+ A++  A         NF L  AV +S       +++    + + S+
Sbjct: 298 RINAIMLFFIYLVFAVAAGAFYLPQELQGNFSLNVAVPVSLIGAWACIASMKRDRVVSSI 357

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            ++  + A +  +  +   +  +     ++       E   +   L          R+ A
Sbjct: 358 FLIAWAGAVVSISVYNRAAHGAFSFAHPSIIWAGFVCEGVAMSILLAYTVQTMAVQRQSA 417

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E    AKS FLASMSHE+RTP+ AILGF  +    ++        ++Y+  I  S QHL+
Sbjct: 418 EAMAQAKSTFLASMSHEIRTPMTAILGFLNL----SLQMRPEGQLRQYLLKIRTSAQHLM 473

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSV 361
            +IN+ILDL++IEA + EL      +  ++R+   +L  RA E   E+   + P L   +
Sbjct: 474 GIINDILDLAKIEADKMELDADPFEVEAVLRDTADILVARAFENGNELVVSVQPGLQHRL 533

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIKDNGPGIAE 414
             D   ++Q+++NL  NA+KFT   G V + V                  + D G GI  
Sbjct: 534 VGDSLRLKQILVNLGGNAIKFT-RNGTVRLAVLRAEDGPSSEDAVTLRFQVSDTGIGIDA 592

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +P +  SF Q   +      G GLGL I++ ++   GG+  +RS+L +G      
Sbjct: 593 AVLPRLFESFVQADTSTARVYGGTGLGLNISRRLVHLMGGEIAVRSQLGQGSTFQFT 649


>gi|156977380|ref|YP_001448286.1| sensor protein LuxQ [Vibrio harveyi ATCC BAA-1116]
 gi|156528974|gb|ABU74059.1| hypothetical protein VIBHAR_06167 [Vibrio harveyi ATCC BAA-1116]
          Length = 594

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 9/288 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L    + + +   +    + +L+       E  ++AE    AKS+FLA+MSHELRTP+N 
Sbjct: 228 LLSIILLVTAFVLQTQHRVNKLKHLNDELIEATEKAERAAKAKSQFLATMSHELRTPMNG 287

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG S++I  ET      +T KE++  I  S QHL+ ++N+ILD S++E  R +L  +  
Sbjct: 288 VLGISQIIANET----QEKTTKEHVKIILDSVQHLMTILNDILDFSKVEENRLDLEAAPF 343

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L+ ++      +Q   +EKNI+++ + + P       D   +RQ++ NL  NAVKFT  
Sbjct: 344 NLLQVLTPVCSAIQPLVEEKNIQLYVENEVPDTIEFKGDCARVRQILFNLAGNAVKFTGD 403

Query: 386 GGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G V +       +    IS+ D G GI   +   +  SF Q   +      G GLGL I
Sbjct: 404 -GHVLIRAELDEQKRCLLISVNDTGIGIPGDKQGCIFNSFEQADTSTTRKFGGTGLGLAI 462

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            + +     G+  ++S    G + +  LP   +   +P    ++T  K
Sbjct: 463 VKKLTELMSGEIKLKSVESIGTQFVVELPIPWIEKELP--ATQNTPVK 508


>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1195

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 10/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL++ +   ++  K AE  N AKS FLA+MSHE+RTP+NAILG + ++    +    +
Sbjct: 563 ITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLTRLVLETEL----D 618

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++  ++ + Q L+ ++N+ILD S+IEAGR E+ +  IS+ ++VR  + + + + +
Sbjct: 619 PRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNTMGLFRAKIE 678

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +    ++  SL +V   D   + QV+ NL+ NAVKFT   G + + V          
Sbjct: 679 EKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFT-ESGEIRIMVEQIQEDCRTV 737

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G G+ + E   +  +F Q    I     G GLGL I Q ++   GG   + 
Sbjct: 738 TLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLTICQRLVGLMGGSISVS 797

Query: 460 SKLREGVEVIAILPNTRVLN 479
           S    G     ++   +V  
Sbjct: 798 SLKGVGSTFSFVIQMGKVPP 817


>gi|163797321|ref|ZP_02191274.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177412|gb|EDP61968.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1047

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           +         L      + +   Y+   L ++  +I     E+  L+   + A+  ++  
Sbjct: 593 LAWNWQPIAILMIGALLSGALSLYLL-SLTRTEERITRLVMERSQLL---QQARLDAEAA 648

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++A++ N AKS+FLA MSHELR+PLNAILG++++  L+      +   + +I  I  SG
Sbjct: 649 MEQAQQANQAKSKFLAHMSHELRSPLNAILGYAQLALLDPESHGISNRAQGFIKTIIDSG 708

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            HL+ ++ +ILDLS+IE+G   L      L  +  + + ++   A++    +   +D  L
Sbjct: 709 NHLVGVVGDILDLSKIESGYLRLENVPFDLRVLANDAVAIMAASAEKNGNSLRFDLDADL 768

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIA 413
             S+  D   +RQVILN LSNAVKFT   G + + +   +         +S+KD+G GI 
Sbjct: 769 PDSLIGDPVRVRQVILNFLSNAVKFT-TNGSIQLEIRRFTETVGTIRVRVSVKDDGVGIP 827

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472
             +   +  +F Q  ++      G GLGL I + ++A  GG+  ++SK   G      + 
Sbjct: 828 IAKQADLFQAFTQADMSTTRKYGGTGLGLAINKQLVAAMGGEVGVQSKEGAGSTFWFDIA 887

Query: 473 ---PNTRVLNFIPEDNHEST 489
                + V    P  +  ST
Sbjct: 888 FDKAVSEVAEIAPASDDRST 907


>gi|88812626|ref|ZP_01127873.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Nitrococcus
           mobilis Nb-231]
 gi|88790042|gb|EAR21162.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Nitrococcus
           mobilis Nb-231]
          Length = 869

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 183/470 (38%), Gaps = 32/470 (6%)

Query: 31  MDFDREIITLHVESLFRVSPI--LPLFVLLVANIGT-WFTQNPIFPMWSLI-TLAVYAAN 86
              ++        +  R S I  +   VL+ A +    F     F  + L+  L   A  
Sbjct: 5   PAVEQAWAEKDRSARLRFSRIGCVLALVLIPAGVTLDLFIYPQFFGKFLLLRALGDVAVL 64

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
           + LG     +      +      +    I       ++ L E    T           + 
Sbjct: 65  VILGLHFSKNGRDNIRILT----MAWLIIPQATICYMIYLTEGYASTYYAGLNLAILGMG 120

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + L ++     +L  A    +    ++ + + I S+ + +     +    +S        
Sbjct: 121 VLLPVTVWEVAILVSASLALYLVACLSRTEEPINSVLLYNNLYFLVSTGVISATAVYFNR 180

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +     L+ + +                  ++ AE  +  KS F A++SHELRTPL  
Sbjct: 181 LRRFTEFRLNFELDARH---------------KELAE-LDRLKSEFFANVSHELRTPLTL 224

Query: 267 ILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           IL   E +++     P    +    +  I+ +   LL L+N++L++ R+E    +L    
Sbjct: 225 ILAPVEDLLQKRAAIPAAIASQ---LDIIYGNAHRLLRLVNDLLEVIRLEESGVKLDRRP 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L  +++  +  ++  A+ + I   Q++      +  D   + +V  NLLSNA KFT  
Sbjct: 282 LDLTALLKSIVTAVEPLAKSRGITFKQRLPDDPVPIRGDRSALEKVFFNLLSNAFKFTNA 341

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V +T      +   ++++D G GI+E ++P V   F Q   +      G GLGL + 
Sbjct: 342 GGGVRITAEVEPDQ-VQVTVQDTGIGISESDLPFVFDRFRQADSSATRKYVGTGLGLALV 400

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           + +   H G   I+S+L  G  +   LP  R    +   + E T  + +A
Sbjct: 401 KELTEKHDGSAKIQSRLGAGTAITVSLPLARAAGEL---DAEPTDKEIFA 447



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 20/294 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           ++L +S       Q   ++L   L+      ++     E+ N A  R  A + HE+  PL
Sbjct: 590 HNLLRSAKLEQDLQLRNEELQTTLDELTQTQNQLLHS-EKIN-ALGRLSAGLLHEVNNPL 647

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N  L   EV++ +      +E   E IGDI    Q +  +++E+   +    G     + 
Sbjct: 648 NYALTALEVVKNDR-TITGDEELSEIIGDIDEGMQRIRGIVSELRAFAYPSKG----EQQ 702

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                  V+  + ML    ++  +            V      + QV++NL+ NA+K   
Sbjct: 703 TFDAAKAVQGAVQMLVHERRDVAVYNEVD---ESCCVKGSRNHIVQVLVNLIGNAIKAVQ 759

Query: 385 -----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                  G + +           +S++DNG GI    +  V   F       +   +G+G
Sbjct: 760 AVAEQRAGEIRIRAE-EDNGRIRVSVRDNGTGIPADTLNRVFDPFY----TTRDVGEGMG 814

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +GL + Q+I+ NHGG+  +RS+     E    LP    L       H   + + 
Sbjct: 815 MGLSVCQTIVRNHGGELCVRSEEGAWTEFTFDLPAADELTQTQSKAHRDVRERT 868


>gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 683

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++ A   + AKS FLA MSHE+RTP+N I+G + +     +    +  +K+Y+  I  S
Sbjct: 301 EKQAAVIASQAKSEFLAHMSHEIRTPMNGIIGLTHL----ALQSDPSPEHKDYLHKIRSS 356

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL +IN+ILDLS+IEA +  L     ++ +++      ++    +K +E   ++   
Sbjct: 357 ATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLDQKGLEYICEVADD 416

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIA 413
           +   +W D   ++QV+LNLLSNAVKFT+  G V + +   +   Q   +  + D G GI+
Sbjct: 417 VPLKLWGDGLRLKQVLLNLLSNAVKFTSK-GSVRLRIRRENSDSQDLLHFMVTDTGMGIS 475

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +   + Q + +I     G GLGL I + I     G     S+   G      +P
Sbjct: 476 REYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCESEPGNGSTFHLSIP 535


>gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
 gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
          Length = 577

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 9/254 (3%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  +  KS FL+ MSHE+RTP+N I+G +++  +              +  I  S + 
Sbjct: 189 AAENASREKSEFLSRMSHEIRTPMNGIIGMTKMARMSVDDKN---KLLNSLDKIDFSSRF 245

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLS 359
           LL LIN+ILD++RIE+G+ EL      L+ +V    IM + +A +  +       D S+ 
Sbjct: 246 LLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAVDNQVTFRVNTHDLSVP 305

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGRGQY--ISIKDNGPGIAEG 415
            V  DE  + Q+I+NL+SNA+KFT  GG+V   +    TSG        I D G G++E 
Sbjct: 306 GVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAVRLEFRISDTGIGMSEE 365

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +   F Q S +      G GLGL I  +++    G   + SK   G +   IL   
Sbjct: 366 FMQRMFEPFEQASES-AMQYGGTGLGLAICHNLVHMMNGTINVTSKPGNGSQFTVILTLE 424

Query: 476 RVLNFIPEDNHEST 489
              +  P   +E+ 
Sbjct: 425 HSADGTPSLPNENP 438


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 4/236 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F++S+SHELRTPL +I G++E +    +   + E    ++  I +  + 
Sbjct: 356 RLRNLERTRRDFVSSVSHELRTPLASIKGYTETLLEGAV--NDPEHATAFLRIIQQESEQ 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LIN++LDLSRIE+G+   +   + +   + + + + +  A  K + I   +   L  
Sbjct: 414 LTALINDVLDLSRIESGKIIYNFEPVDVKPALEKTMALFEPAASRKGVRIELNVPDGLPP 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V AD      V+ NL+ NAVK+     GRV V+    + +   I + DNG GI + ++  
Sbjct: 474 VLADRNYFDIVMRNLIDNAVKYVDANRGRVRVSAC-KADQNVAIEVSDNGIGIPQADLKR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F +   A      G GLGL I + I+  H G   +RSK   G       P  
Sbjct: 533 IFERFYRVDKARSRELAGTGLGLSIVKHILLAHKGNVEVRSKTNSGSTFTVTFPIA 588


>gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 880

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L   +        E   RA+  +  KS+FLAS+SHELRTPLNAI+GFS V+  E + PL 
Sbjct: 607 LEDLVAQRTGELREALDRAQAADRLKSQFLASISHELRTPLNAIIGFSTVLLDE-LSPLL 665

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +E +  I+++G++LL+LIN+ILD++RIEAG++ L   A +++ +V+  + ++    
Sbjct: 666 VEEQREDLETINKNGRYLLDLINDILDMARIEAGKFALHREATAVLPVVQSAVDIMHGLN 725

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396
            +  + +   I P L  +  D   +RQ+++NL+SNAVKFT   G++ V            
Sbjct: 726 SKP-VTMRIDIAPDLPRMDVDPTRLRQIVINLISNAVKFTDR-GQIVVRAIRRVVQEATP 783

Query: 397 -------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                   G    IS++D G G+    +  +   F Q   A      G GLGL I + ++
Sbjct: 784 IGSHYLLPGDWIVISVQDTGIGMDAEALGKLFQEFQQVH-AGARGILGSGLGLSITRRLV 842

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             H G   + SK+  G      +    +   I + + 
Sbjct: 843 DLHDGDLWVDSKVGVGSTFSFAIATASIPAPIEQQSP 879


>gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 357

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 15/318 (4%)

Query: 158 MLPYAVFLSF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            L  AV     +   + +  +        D+S   +L+ A+     I    F   VK   
Sbjct: 49  SLTSAVIYFLGWKAFIYMHWRFANKHKKFDLSHFPILSGAVEAMNKIASGDFNVLVKTNE 108

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                +       +AK L    + R          F++ +SHE+++PL +I GF+ +++ 
Sbjct: 109 LDPFNEVADNVNRMAKELGSLEKLR--------QDFISDVSHEIQSPLTSISGFATLLKK 160

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G L+ +    Y   I    + L  L   +L LS +E+    L+     +   +   +
Sbjct: 161 ---GSLDKDQISHYASIIETESKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVL 217

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +ML+ +   KNI +   ++ ++  +  DE  + QV +NLL+NA+KFT   G + V + + 
Sbjct: 218 LMLEPQWSAKNITLDISLEETI--ICGDEDLLSQVFINLLNNAIKFTPENGNIGVNL-YN 274

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +  G    + D G GI+  + P +   F +   A   +  G GLGL I + I+  HGG+ 
Sbjct: 275 NEDGVECKVSDTGIGISSEDQPRIFERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKI 334

Query: 457 LIRSKLREGVEVIAILPN 474
            + S++ +G E I  LP 
Sbjct: 335 SLTSEIGKGTEFIIWLPK 352


>gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 618

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + E   +++    +    ++ +IN+
Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMIND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +          +K   I +++      
Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 493

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  +      +SI D G GI   ++  +
Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 552

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612


>gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 512

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 153/318 (48%), Gaps = 18/318 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ----AEKDDLIAELEV 230
               + S+ +  + + G++ +A +  T +   + +     L+ +     +  ++      
Sbjct: 190 VIGFVSSIVITMLLVVGLIRSANASLTRLKTGVRRFGEGDLTHRINETRDAGEIRDLART 249

Query: 231 AKSLSDETRKRAEE----------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +S + ++  EE           N AKS FLA++SHELRTPLNAI+G+SE+++ E   
Sbjct: 250 FNDMSAKLQRAIEEVHDAKADADAANAAKSMFLANVSHELRTPLNAIIGYSEMLQDELSD 309

Query: 281 --PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              L+ + +   +G I  SG+ LL+LIN+ILDLS++E G+  +S   +    ++ +    
Sbjct: 310 GQQLDQDQFHHDLGTIIFSGRQLLSLINDILDLSKMETGKMTVSLETVDPAALIYQICDA 369

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           L     +KN  +   I   L  + +D   ++Q++ NL SNA KFT   G + V +     
Sbjct: 370 LSPLITQKNNTLTLSIADDLPEMESDPAKLQQIVTNLFSNACKFT-EDGVIEV-IARIEK 427

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++KDNG GIAE +   V  +F Q   +  S   G GLGL I +      GG   +
Sbjct: 428 NSLLIAVKDNGIGIAEAQQANVFEAFEQAESSTGSKYGGTGLGLAIVREFCRMLGGDITL 487

Query: 459 RSKLREGVEVIAILPNTR 476
            S   +G    A LP  +
Sbjct: 488 ESTPGKGSTFTATLPLDQ 505


>gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 2099

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 166/392 (42%), Gaps = 24/392 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +LV  +   +      +      +   L ++    +   + ++++  F      FL 
Sbjct: 1277 ARRILVTDLPDNVVPISSGVFTTLPRSAIVLPVHFEGQVKAVIELASVGEFTELQLSFLD 1336

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + +   +I +    +  L      A +        L ++N ++     + ++   
Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395

Query: 227  ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN+IL   + +     
Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ +   E+   IH +G  LLNLI++ILDLS+IE+G   +    I + +++       
Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEMMARPF 1514

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ +++     +   ++  +  D K ++Q++ NLLSNA KFTA GG V + V   + 
Sbjct: 1515 RHEAENRDLSFSVDVGADVAKSLITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573

Query: 399  RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                               + D G GI   +   +  +F Q   +      G GLGL I+
Sbjct: 1574 GWSSDHPSLKHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            + +    GG+  +RS    G   +  LP T V
Sbjct: 1634 RELANLLGGEIQLRSTPGIGSTFVLYLPLTYV 1665


>gi|167646752|ref|YP_001684415.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167349182|gb|ABZ71917.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 592

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 184/456 (40%), Gaps = 27/456 (5%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
              R    +    L+ A   T +    +   W  +  A    N  LG  +          
Sbjct: 16  HRRRDVKTILPMSLMAAVGTTVWLDWRLTFAWLAVVCAFIVVNQGLGYWIDR-TAAPRAS 74

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             W              + LL LV               A +L A+++S+ + F +   +
Sbjct: 75  QEW--LYAGVTFFYTSAYALLPLVLITDG--RRAPAVAGAAMLGAVALSSTAEFPISRRI 130

Query: 164 FLSFFPVVVALSTQAIMSMHVLD---ISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             +    V+  +  A+    V +    ++   +A        +   L ++  +    QA 
Sbjct: 131 GAASLLAVLLTALLALARPTVGETSGQTMVAFVAAVAFLGYVLVAALHRATAERQLVQAL 190

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                 E E   + +            AK+ FLA+MSHE+RTPLN +LG  +V++ + + 
Sbjct: 191 AVAREKEAEAEAANA------------AKTTFLATMSHEIRTPLNGVLGMLQVMQADGLS 238

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L     +E +  + +SG+ L  ++N++LDLS+IEAGR E+   A  L  ++  C   + 
Sbjct: 239 DL----QRERLEIVRKSGEGLTAILNDVLDLSKIEAGRLEIQTVAFDLPGLLVGCHHAVS 294

Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + A EK +     +      ++  D   +RQVI NLLSNAVKFT   G + ++    +G 
Sbjct: 295 VLAAEKGLSCTLTVASEARGLYHGDPLRLRQVIGNLLSNAVKFTNS-GTIDLSA-RLNGD 352

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I++ D G G+A  ++  +   F Q   +      G GLGL I + +    GG   + 
Sbjct: 353 ALEIAVSDTGVGVAPEDLGRLFGKFSQLDASSTRRHGGTGLGLAICRDLCGLMGGGISVT 412

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           S + +G      LP  R+      +   S + +  A
Sbjct: 413 STVGQGSTFTVRLPAARLSPLREAEAETSAKSQTPA 448


>gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 709

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              R+ AE  N  K  FLA +SHELRTPLN ILG+ +++    +   + E     +  I 
Sbjct: 332 QAAREAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQL---SEEKKAIALETIE 388

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+ +    LI ++LD+SRI  G+  L+ S++ L   +      + L A+ K+I+I  +I 
Sbjct: 389 RNAKLQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIA 448

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           P +     D   ++QV+ NLL+NAVKFT  GG V + +  T      I + D G GI   
Sbjct: 449 PDVQLFMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLEST-NTYTQIQVSDTGKGITPE 507

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            +P V  +F Q   A      G+GLGL I + I+  HGG     SK   +G      LP 
Sbjct: 508 FLPYVFETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPL 567


>gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1033

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 133/246 (54%), Gaps = 14/246 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +LAK+ FLA+MSHE+RTPLN +LG  +++++  + PL     ++Y+     SG+ LL ++
Sbjct: 660 SLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL----QRDYLDTALNSGRSLLQVL 715

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILDLS++E+G+ EL      L +++ + +   +  A+E+ + +  +ID +L     AD
Sbjct: 716 NDILDLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFVAD 775

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIP 418
           +  +RQ++ NL+ NAVKFT   G + V                   + D G GI   ++ 
Sbjct: 776 KGRLRQILFNLVGNAVKFT-ESGSIEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDKVS 834

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           TV   F Q   +     QG GLGL I + ++A  GG   + ++  +G  +   +  TR++
Sbjct: 835 TVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTI-RTRII 893

Query: 479 NFIPED 484
              P+D
Sbjct: 894 ES-PDD 898


>gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
 gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
          Length = 970

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174
            +  L          LT+   A L++A+ I     ++          A  L      + +
Sbjct: 325 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 384

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233
             Q   +  +  +  A + A   +    I         K L    E  ++L+ E      
Sbjct: 385 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 444

Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           L++E            R  AE+ N AKS FLA+MSHE+RTP+N +LG + ++    + PL
Sbjct: 445 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 504

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K Y   I+RSG++LL ++N++LD S+IEAG  E+ ESA  L  +V +   ++Q R
Sbjct: 505 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 560

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EK++     I+  ++  W  D   + QV+ NL+ NA+KFT  G   ++V++       
Sbjct: 561 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 620

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA+ E  T+  +F Q S   K A  G GLGL I++ I+   GGQ  + S
Sbjct: 621 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 679

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  EG      +P T      P
Sbjct: 680 EEGEGSRFWFTVPLTPCDAVEP 701


>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 676

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 9/253 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A    D   +RAE  ++AKSRFLA++SHE+RTPLN ILG +++     +G   N   + 
Sbjct: 155 EAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADL----VLGTELNPEQRT 210

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  +  SGQ LL LI+ +LD SRIEAGR +L+     L  +    + +L  RAQ+K IE
Sbjct: 211 YVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIE 270

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISI 405
           I   +     + V  D   +RQ+++NL  NA+KFT  GG V V++G+     G    +++
Sbjct: 271 IALDVAEDFPAAVLGDADRVRQILINLAGNAIKFTERGG-VGVSLGFARAGTGGEVVLAV 329

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D GPGI E  +P +   F QG  +   + +G GLGL I + ++   GG+    S+L  G
Sbjct: 330 ADTGPGIPEERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEADSRLGRG 389

Query: 466 VEVIAILPNTRVL 478
                +LP   V 
Sbjct: 390 STFRVLLPLAEVA 402


>gi|111225753|ref|YP_716547.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153285|emb|CAJ65037.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1371

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 17/349 (4%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +L  + +++ + F   +   +      + +    IM+    +  LA             +
Sbjct: 721  VLGVIELASFTPFSELHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 779

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              L ++N ++    A  +D   E+E+A+   +E  ++    +  K+ FLA+MSHELRTPL
Sbjct: 780  VELQRTNNELEEKAALLEDKNHEIELARIGLEEKAEQLALSSQYKTEFLANMSHELRTPL 839

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N++L  ++++       L+     ++   IH +G  LL LIN+ILDLS++EAG+ ++  +
Sbjct: 840  NSLLILAKLLADNPDRNLSR-KQIDFAETIHSAGSELLGLINDILDLSKVEAGKMDVDAT 898

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            ++    +      +    A EK +     +   +      DE+ ++QV+ NLLSN+VKFT
Sbjct: 899  SVRTAALCDAVAGVFGPVADEKGLAFEVNLAADVPAEFITDEQRLQQVLKNLLSNSVKFT 958

Query: 384  AIGGRVHVTVG-------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
               G V + V               ++G     ++ D G GIA  ++  +  +F Q    
Sbjct: 959  DS-GTVRLDVTLARPDLPHLASHLRSAGTVLSFAVSDTGIGIAAEKLRMIFEAFQQADGT 1017

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ I    GG   + S +  G      LP   +  
Sbjct: 1018 TSRRYGGTGLGLSISKEIARLLGGSIAVSSAVGHGSTFTLYLPAVPLAQ 1066


>gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 501

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++  ++A+  +  KS FLA+MSHE+RTPLNAI+GFS ++  E    L  E  +EY 
Sbjct: 263 EDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSD-LRPEDIEEYA 321

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I ++GQ L+ LI++ILDLS+IE+   E + S  SL  +  +   M +L  +   +E+ 
Sbjct: 322 ALIEKNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVK-PGVELI 380

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +     S+ AD   + QV+ NL++NA+KFT+  G + +       +   + ++D G G
Sbjct: 381 ADLPAEDVSITADPVRLEQVVNNLINNAIKFTSR-GSIRIGYRRRGEKDVELFVEDTGKG 439

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++E  I  V   F +G     S  QG GLGL I ++I+ + GG+    S++ EG      
Sbjct: 440 MSEEVIAHVFERFYKGD----SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVC 495

Query: 472 LPNTR 476
           LP  R
Sbjct: 496 LPIGR 500


>gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 564

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             L +++F+A++SHEL+TPL +I GF+E +        +NET ++++  I +  + L  L
Sbjct: 343 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 398

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL LS IE+     ++       I+ + I M++  A  K+I +    D +   +  D
Sbjct: 399 INDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGD 456

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +    Q+ LNL+ NA+K++  G +V V V ++     Y+ I DNG GI + ++P V   F
Sbjct: 457 KDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPKEDLPRVFERF 515

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   +    + G GLGL I + I+    G   ++S L EG      +
Sbjct: 516 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 561


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             L +++F+A++SHEL+TPL +I GF+E +        +NET ++++  I +  + L  L
Sbjct: 334 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 389

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL LS IE+     ++       I+ + I M++  A  K+I +    D +   +  D
Sbjct: 390 INDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGD 447

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +    Q+ LNL+ NA+K++  G +V V V ++     Y+ I DNG GI + ++P V   F
Sbjct: 448 KDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPKEDLPRVFERF 506

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   +    + G GLGL I + I+    G   ++S L EG      +
Sbjct: 507 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 552


>gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
 gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
          Length = 1819

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1172 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1231

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1232 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1291

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1292 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1351

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1352 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1410

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1411 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1470

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA  ++ 
Sbjct: 1471 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1530

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP  R 
Sbjct: 1531 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1589


>gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1377

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I      ++      + AE    AKS FLA+MSHE+RTP+NAILG + ++  + + P 
Sbjct: 734 RDIRPQREMEAELAHRAELAESAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRDLIDPA 793

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N       +  I  + +HLL +IN+ILDLS+IEAG+ +LS+   S + +V +   ++   
Sbjct: 794 N----INRLDKIESAARHLLAVINDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDE 849

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           A+ K + +   +DP L  +  D   +RQ +LN  SNAVKFT   G V + V         
Sbjct: 850 ARAKGLSLKVDLDPELPWMRGDVTRLRQALLNYASNAVKFTHT-GFVTIRVRLQERDAEG 908

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++D G GI   +   +  +F Q   +      G GLGL I   +    GG+   
Sbjct: 909 LTVRFEVEDTGIGIPPDKQARLFQAFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGA 968

Query: 459 RSKLREGVEVIAI 471
            S    G      
Sbjct: 969 DSVAGRGSTFWFT 981


>gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T]
 gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T]
          Length = 596

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/323 (29%), Positives = 149/323 (46%), Gaps = 9/323 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L+  +L     ++     V        +    D +++G +   +     +   L    +
Sbjct: 120 WLALHILEADRRMALVVHGVQRGLTLEQARTQADETMSGSMRVLVETVLVMYDKLANRTM 179

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +      +    AEL+ A       ++ AE  + AKS FLASMSHE+RTPL AILG S 
Sbjct: 180 AMTREINRRRQAEAELQKAHEALKRAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSH 239

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  E +      + +E +  I  +G+HLL++IN ILDLS+IEAG++ L E+A+ L  +V
Sbjct: 240 LMHQEEL----PASQRERLDVIENAGRHLLSIINGILDLSKIEAGKFTLDEAALDLRGVV 295

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E + ML  +A+ K + +  + D    +   D   +RQ ++N L NA+KFT  GG + V 
Sbjct: 296 EEAMAMLAHQAEAKGLSLRAEFDLPPGTFLGDATRLRQALVNYLINALKFTERGG-ITVR 354

Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
              ++           ++D GPGIA  E+  +   F Q          G GLGL I   +
Sbjct: 355 CSASAVDTDAVDVRFVVEDTGPGIAAAELRRLFKPFTQTEATSTGEHGGTGLGLAITARL 414

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
               GGQ    S+   G      
Sbjct: 415 AELMGGQAGAESEPGRGSRFWFT 437


>gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 530

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 9/253 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           +    AE  N AKS FL+SMSHELR+PLNAILGF++++  +   P    + +  I  I R
Sbjct: 139 QALAAAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATD--SPPPTPSQQASIDQILR 196

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +G HLL LIN++LDL++I+AG+  +S  ++SL D++REC  M+  +A ++ I +      
Sbjct: 197 AGWHLLELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIVTQAGQRGIRMTFPQGE 256

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   V AD   ++QV++NLLSNAVK+    G V VT          +S+ D GPG++  +
Sbjct: 257 APCHVRADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGRVRVSVSDTGPGLSPEQ 316

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +        E+G G+GL +A+ +M   GG   + S   +G      L    
Sbjct: 317 VGRLFQPFNRLGQ-EAGPEEGTGIGLVVAKRLMELMGGGIGVDSTPGKGSVFWIEL---- 371

Query: 477 VLNFIPEDNHEST 489
             +  P     +T
Sbjct: 372 --DSAPAPEMAAT 382


>gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 1035

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA G +V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  + P TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033


>gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
 gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4]
 gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4]
 gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
          Length = 494

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+      R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 249 IQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSE---EMDG 305

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I+++ + LL LI++I+D+S+IE+   E      SL  I+ E     Q    
Sbjct: 306 EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQ-CQSLNI 364

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              IE   ++    + +  D    +QVI NL++NA+KFT   G + +           I 
Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMY-GHITLGSKILQNGTIDIY 423

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G G+ + ++  +   F +      S + G GLGL I ++I+ +  G+  + S   +
Sbjct: 424 VKDTGMGMPQEKLAHIFERFYKMD----SFKPGAGLGLSICKTIIEHMQGEINVTSIEGK 479

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 480 GSNFTITIP 488


>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 91]
          Length = 927

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 499

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E RK+AEE +  K  FLA+MSHE+RTPLNAI+GFS+VI       L+ 
Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +++  I  + +HL+ LI+++LDLS+IE+   + + +  SL  ++ +     Q    
Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKE-QTMKP 366

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402
              IEI   +      +  D   ++QVI N ++NA KFT   G +H    V        +
Sbjct: 367 ISEIEIRALLPNEDVYINTDATRLKQVISNFINNARKFTEK-GYIHFGYAVDSVDASSVH 425

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI +     +   F +      + +QG GLGL I ++I+ +  G   + S++
Sbjct: 426 VFVEDTGSGIPKECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVESEM 481

Query: 463 REGVEVIAILPNTR 476
            +G   I  LP  R
Sbjct: 482 GKGSRFIVTLPFER 495


>gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 527

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 3/248 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK+RFLA++SHELRTPLNAILGFS+V+  E  G L N+  +EY+  IHRSG HLL+++
Sbjct: 243 NDAKTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVV 302

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N +LD+S+IEAGRYEL      + D +  C  ML  +A+EK + +  ++  S+  + AD+
Sbjct: 303 NTMLDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQ 362

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + ++Q+++NL+ NAVKFT  GG V V      G    +++ D G GIAE ++  +   F 
Sbjct: 363 RAVQQILINLVGNAVKFTDKGGLVTVDAE-VDGAMLNLTVSDTGIGIAEDKLEKLGQPFV 421

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPE 483
           Q         +G GLGL + + ++  HGG   IRS   EG  V+  +P     +    P 
Sbjct: 422 QIQNDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIPRDGAGICEPSPV 481

Query: 484 DNHESTQY 491
               + ++
Sbjct: 482 STRAAVEF 489


>gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
 gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
          Length = 592

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 165/379 (43%), Gaps = 20/379 (5%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G  + +  ++    +   +   +    +     +  L    L  AV L        +   
Sbjct: 101 GTFFGVFAVLNLFYYVYTFAQTFFILFMNNTKGVRYLIKSALFSAVPLIGILANTYIIPL 160

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                      + G L + L    +    +   + K LS              A  L  E
Sbjct: 161 YGAYPFQPYCLVIGALLSYLFMVEHQQDQMEFEHRKRLS-------------KALELEKE 207

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
           + ++A+     K+ FLA+MSH++RTP+NAI+GFS++I      P + E  K  I  I  S
Sbjct: 208 STRKAKVAGEVKNAFLANMSHDIRTPMNAIIGFSDIIAEH---PDDEEIVKNAISKIQAS 264

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ LL +IN++LDLS+IE+G+ E+ E    L  +     +ML+   Q+  I+   +    
Sbjct: 265 GEILLKIINDVLDLSKIESGKAEIVEMVTDLKQMEENLKMMLEYSIQKGMIDFKVEDQIE 324

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQY--ISIKDNGPGIA 413
              VW D   ++QV++N+L+NAVKFT  GG +  +      +        +IKD G G+ 
Sbjct: 325 NPLVWCDATKLQQVLVNVLNNAVKFTQAGGTITFSCVQRMIAPGFAEYKFTIKDTGIGMT 384

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E        +F +   + +S  +G GLGL I + ++    G  +I+S   +G ++   LP
Sbjct: 385 EEFQKHAFEAFERERTSTESKTEGTGLGLAIVKKLVDLMHGDVIIQSNSGQGTKIQISLP 444

Query: 474 NTRVLNFIPEDNHESTQYK 492
                      + ++ +YK
Sbjct: 445 LRIATENQLHQSDKAKEYK 463


>gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1009

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 19/293 (6%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L    ++ +L A+ +   +        A   N AKS FLA+MSHELRTPLNAILGF++++
Sbjct: 495 LGVAVKQAELFAQTQKQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLL 554

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + +         ++EYI  +++SGQHLL LIN++L++S+IEAGR   + +  ++   ++ 
Sbjct: 555 QRDR---TLAAKHQEYIKIVNQSGQHLLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQA 611

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
             +MLQL+A+ K + +  +++ S+   V  DE  +RQV++NL+SNA+KFT  G   + V+
Sbjct: 612 IQVMLQLKAESKGLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTREGEVTLKVS 671

Query: 393 VGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           VG                      I D+G GIA  EI  +  +F Q     +S  QG GL
Sbjct: 672 VGQVDEDLGLFEDNGVSNTYLRFEIIDSGCGIATEEINDLFQAFKQTQSGRESQ-QGTGL 730

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           GL I+Q  +   GG+  + S+L  G      +P   V + +  ++  +    C
Sbjct: 731 GLVISQRFVNLMGGEIQVSSELGHGSCFSFQIPVG-VADQMVNESENALNQAC 782


>gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 731

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 23/320 (7%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +  A           + ++   +LA AL       Y   +  ++ L           
Sbjct: 275 LAGLAEADFRAPWYRELAITVAFWLVLAGALCLLLVQQYRSGRGQLRALRL--------- 325

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                     E +++A   N +KS FLA++SHE+RTPLN +LGF+++       P     
Sbjct: 326 --------LQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQI---GYRDPSVVPE 374

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++    I  SG+ L  ++N++LD+S+IEAG+  L  +   L   +   + +++  A++K
Sbjct: 375 ARQKFARILESGKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLVRGFARDK 434

Query: 347 NIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            I +   +D  +  V   D   + Q++LNLLSNAVKFTA  G+V VTVG  SG    I++
Sbjct: 435 GIALCLMVDRRVPEVIVVDPLRLGQILLNLLSNAVKFTAS-GQVDVTVG-VSGDKLVINV 492

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D+G G++E +I  +  +F Q   +      G GLGL I + ++    G  ++ S L  G
Sbjct: 493 RDSGLGMSEEQISRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVTSHLGAG 552

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP  R      E  
Sbjct: 553 STFSIRLPLARSTLTSVEPE 572


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 10/269 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +  +L+ + +  +      +  +  K  FLA+ SHELRTPL+ I+G ++ +     G L 
Sbjct: 419 MAQQLQTSFATLENQNIELKRLSQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLP 478

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +T  E +  I  SG+ LL L+N+ILD S+++    EL   ++ L +++   +++ Q   
Sbjct: 479 TKTT-ENLTMIANSGRRLLTLVNDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLV 537

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
            +KNI++   +   L  V ADE  ++Q++ NL+ NA+KFT   G V +T        S  
Sbjct: 538 GQKNIKLINSVPDDLPGVEADENRLQQILYNLIGNAIKFT-ESGTVEITACEKIIDESNH 596

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++I D G GI+E ++  +  SF QG  +      G GLGL + + ++  H G   +R
Sbjct: 597 YIAVTISDTGIGISEDKLEQIFASFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVR 656

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           SK+ EG +    LP  +     P    E+
Sbjct: 657 SKVAEGSQFTFTLPKAK----SPIQATEN 681


>gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 985

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 143/256 (55%), Gaps = 9/256 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +       +    AE  N AKS FL++MSH++RTP+NAI+GF+ +         N +
Sbjct: 451 TADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNKK 507

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++Y+G I  S  HLL+LIN+ILD+SRIE+G+  L E+ +SL D++ +   ++  +   
Sbjct: 508 MVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHA 567

Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399
           K +E++   +D +   V+ D+  + Q++LNLLSNA+KFT  GG + V +          +
Sbjct: 568 KQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQ 627

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KDNG G++E  +  + + F +   +  S  QG GLG+ I ++I+   GG   I+
Sbjct: 628 LYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQ 687

Query: 460 SKLREGVEVIAILPNT 475
           ++  +G E I  LP  
Sbjct: 688 TEQGKGTEFIVRLPLR 703


>gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
 gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
          Length = 1341

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             +      +   +A + DL+ +  E  + +++E    A+E +  KS+FLA+MSHE+RTP
Sbjct: 674 EGVIGVIFDVTELRAREMDLVEQAKERRQLVANEA--AAKEASRLKSQFLANMSHEIRTP 731

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +  ++G S       +     +  +EY  +I+RS   LL +IN+ILD S++E+G  ++ E
Sbjct: 732 ITGVIGMS----ELLLDLELGDEEREYGENIYRSANALLAVINDILDFSKVESGHLDIEE 787

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAV 380
              SL  IV +   ML   A+ KN++   +I   +     V  D   +RQ+I NLL+N++
Sbjct: 788 VQFSLSVIVGDVNKMLSFAAERKNLDFQSEIASDIEEDLVVLGDPGRVRQIITNLLTNSI 847

Query: 381 KFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V  +V         I     ++D G GI       +   F QG  +      
Sbjct: 848 KFTKQ-GYVRFSVVKERETPDIIEIKFVVEDTGIGIDAQVRSRLFQPFSQGDASTARRFG 906

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           G GLGL I+++++    G+  + S   +G      +P  R  N
Sbjct: 907 GTGLGLTISKNLLELMKGRMTLESAEGKGTTATFWIPFNRPPN 949


>gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1198

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 3/283 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L    +        L ++NV++       +   AEL  A+       +R E+ +  KS F
Sbjct: 433 LLDTQTRLQAQQAELEQTNVQLEEYAHRLERQKAELLRAQDDLAANAERLEQSSRYKSEF 492

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   LL LIN+ILDLS
Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++EAG+  +    +S+   ++    + +  A  K++ +     P     + +D + + Q+
Sbjct: 552 KVEAGQVSVELETVSIDATLQSLEELFKPMAGAKHLSLVFDRLPGAPETIVSDGQRVTQI 611

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNAVKFT   G V ++V         I ++D+G GIA  ++  +  +F Q   + 
Sbjct: 612 LRNLLSNAVKFTER-GEVALSVSPADDGMLRIDVRDSGIGIAADKLEMIFEAFQQADGST 670

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++      GG+  + S+L +G      LP 
Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASELGKGSVFTLWLPL 713


>gi|149178628|ref|ZP_01857214.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148842554|gb|EDL56931.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 667

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 179/490 (36%), Gaps = 52/490 (10%)

Query: 28  PSKMDFDREIIT--LHVESLFRVSPILPLFV---LLVANIGTWFTQNPIFPM-------- 74
           P+      E++    H            L V   L +     W T      +        
Sbjct: 12  PAVARRAEELLQKNQHELYQRTDRLFACLMVVQWLAMMAAAFWITPQTWIGIHSQTHLHV 71

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W+   L        +   ++     +    +    +L   + I L    +        + 
Sbjct: 72  WAACLLGGLITAFPVMLTLLRPGTTLTRHVIAISQMLTSSLLIHLSGGRIETHFHIFGSL 131

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
            +L  Y+   +LI+ +   + +  +    +     +   L+      +      +   L 
Sbjct: 132 AFLAFYRDWRVLISATTVVVIDHSVLGLFY--PQAIFGVLTANPWQIIEHGAWIIFEDLF 189

Query: 195 TALSF------FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
             ++          +     +        + E  +   EL  A  +  E     E++   
Sbjct: 190 LFIAIQQNVQEMKAMARQRAELEETKAFVETEVKNRTHELHTANRIISEKNMVLEQKTAE 249

Query: 249 ---------------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                                KS FLA+MSHE+RTP+NAILGF++++      P N E  
Sbjct: 250 LKHQTQALQAAAEAAEAANLAKSAFLANMSHEIRTPMNAILGFNDILLDGVSQPENIEAA 309

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +     I  +GQ L+ LIN+ILDLS+IEA + E+     S   ++     ++ +RA  K 
Sbjct: 310 R----TIKENGQFLIKLINDILDLSKIEAEKMEVEHVPCSPHTLLNNIYSLMNVRAISKG 365

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQY 402
           + +  +I+  L   +  D   +RQ+++N + NA+KFT   G V V     +         
Sbjct: 366 LPLDFQIEGPLPETISTDPTRIRQILINTIGNAIKFTET-GAVKVVTRLINEPDRPARLQ 424

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D+G GI    I ++   F Q   ++     G GLGL I++ +    GG+  I S+ 
Sbjct: 425 FDVIDSGIGIDAANIDSLFLPFTQADDSMTRKFGGTGLGLTISKRLTELLGGEITIASEP 484

Query: 463 REGVEVIAIL 472
            +G      +
Sbjct: 485 GKGTTFSITI 494


>gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 580

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 12/298 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I Y  +   + +    A    L+  L   +    +  + AE  +  KS FL+ MSHE+RT
Sbjct: 151 IVYRTWGWLIGLNIAFAILVLLVYLLSSRQKKLSQDLQYAENASKEKSEFLSKMSHEIRT 210

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G +++     M   N E  ++ +  +  S Q LL LIN+ILD++RIE+G+ EL 
Sbjct: 211 PMNGIIGMTKIAR---MSLENREKLEDSLNKLDMSSQFLLALINDILDMARIESGKVELV 267

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVK 381
           E   +L+ ++    IM   RA +KNI+        +  ++  DE  + Q+I+N++SNA+K
Sbjct: 268 EKEFNLLQMLDNIEIMFAQRAADKNIDFRLIKRGLTGQALIGDELRITQIIINIVSNAIK 327

Query: 382 FTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT  GG + + V  T             + D G G++E  +  +   F Q          
Sbjct: 328 FTPSGGEIILEVRQTPTDTSRYVNLEFIVSDTGIGMSEEFMKHMFEPFEQ-EKQTVRQYG 386

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE--DNHESTQYK 492
           G GLGL I Q+++    G   + S   EG      L   ++ +  P    N EST  K
Sbjct: 387 GTGLGLAICQNLVKMMHGTMSVNSLPGEGSTFTVRLGLEQMDHENPVIMSNSESTDGK 444


>gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
 gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
          Length = 956

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 10/249 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++++SHELRTPL +ILGF+E++    + P   +  K+Y+  I+   + L +
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASILGFTELMLNRELKP---DKQKKYLTTIYNEARRLTS 637

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LD+ R+EAG+    +  + L+ I+ + I   Q+      I+I          +  
Sbjct: 638 LINDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIHKIKID-DRSIGNDVILG 696

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + QV  NL+SNAVK++  GG + + + +   +     ++D G GI E  +  + T 
Sbjct: 697 DKSKVEQVFTNLISNAVKYSPGGGDIIIRL-YQEDKSVLAEVEDKGLGIPEDALDKLFTK 755

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---- 479
           F +   + +    G GLGL I Q IM  H G   + S   +G       P          
Sbjct: 756 FYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASSYGKGSIFTLSFPLIETAEEPGA 815

Query: 480 -FIPEDNHE 487
             +P+ + E
Sbjct: 816 ISVPKASAE 824


>gi|313905593|ref|ZP_07838955.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
 gi|313469540|gb|EFR64880.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
          Length = 446

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 18/313 (5%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-----------SNVKILSCQAEK 221
           A+ T        +   +      +L   + ++  + +            ++     + E 
Sbjct: 141 AVWTLLFGFAQPICFVILIAFVLSLVLASRVSKRILEPINSINPDDPMQHIDEEEYR-EI 199

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L+  ++       + +K  E+  L +  F A++SHEL+TPL+AI G++E++E E +  
Sbjct: 200 APLLRRIQSQNEQLKQDQKEIEKAALIRQEFTANVSHELKTPLHAISGYAELLENEMVK- 258

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  K +   I      +  L+ +I+DL+R++ G  E+      L  I    +  L++
Sbjct: 259 --EEDIKPFASKIRGESSRMTKLVEDIIDLTRLDNGGDEMKWEDCDLYRIAENAVDSLEV 316

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A    +E+      + +   A  + +  ++ NL  NA+K+   GG V V V  TS    
Sbjct: 317 AATALGVEVTVDGSDATTR--AIPQLIYSIVYNLCDNAIKYNHSGGSVQVRVQQTSYN-I 373

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +S+KD G GI E     +   F +   +      G GLGL I +  +  H G+  ++SK
Sbjct: 374 VLSVKDTGIGIPEESRERIFERFYRVDKSRSKEVGGTGLGLSIVKHAVIIHNGKIEVKSK 433

Query: 462 LREGVEVIAILPN 474
           L EG E+I  +P 
Sbjct: 434 LGEGTEMIVTIPK 446


>gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 939

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +S     ++ AE     K  FLA+MSHE+RTP+NAIL   + I   ++     
Sbjct: 420 ITKQKQLESELRVAKQEAEHSARVKELFLANMSHEIRTPMNAILNLGQQITKTSL----T 475

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + +IG I+ +  +LL +IN+ILD S+IEAG   L      L D++ + + ++   A+
Sbjct: 476 EHQQFFIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLADLIGQAVQVMTHDAE 535

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400
           +K + I  +I   L  ++  D   + Q++LNL+ N+VKFT   G VH+          + 
Sbjct: 536 KKGLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNA-GSVHIQCNSKKVAGNQL 594

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +S+ D G GIA   +  + T F Q   +I     G GLG+ I + ++   GG   ++S
Sbjct: 595 ITLSVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSITKQLVDLMGGTIDVKS 654

Query: 461 KLREGVEVIAIL 472
           +  +G  V   L
Sbjct: 655 EKNKGTTVTVKL 666


>gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
 gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
          Length = 1424

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 124/255 (48%), Gaps = 10/255 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL+  +    + R+ A     AKSRFLA+MSHE+RTPL  I+   E+ E   +G    
Sbjct: 779  ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGH--- 835

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++    + +S  +LL+++N+ILD S+IEAG+  L     SL  +      +   +A 
Sbjct: 836  -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 894

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K ++    +DP L  SV  D+  + QV+ NLLSNA+KFT   G V +T    S      
Sbjct: 895  AKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFT-EHGTVGLTTKLVSQNDGQQ 953

Query: 401  -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 + D+G GI+E  I  +   F Q          G GLGL I++ ++   GG   + 
Sbjct: 954  QVCFEVFDSGIGISEEHIRNLFRPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGTLNVI 1013

Query: 460  SKLREGVEVIAILPN 474
            SK+  G      +P 
Sbjct: 1014 SKVNLGSTFTISVPL 1028


>gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 946

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 133/236 (56%), Gaps = 6/236 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R++AE  N  K  FL+ +SHELR+PLN ILG++++++ + +     +  +E +  I R+ 
Sbjct: 567 REKAERANRIKDEFLSILSHELRSPLNPILGWTQLLQTKKL---EEQQVEEALAVIERNV 623

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +    LI+++LD+++I  G+  L+ + + L   ++  I ++++ A+ KNI +   +  + 
Sbjct: 624 KLQTQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNN- 682

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D+  ++Q+I NLLSNA+KFT  GG+V + +     +   I++ D G GI    +P
Sbjct: 683 CYIKGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQV-NQQVQITVTDTGKGIDPEFLP 741

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILP 473
            +  SF Q  ++I     G+GLGL I + ++  HGG  +  S    +G   +  LP
Sbjct: 742 HIFESFRQEDVSITRHYGGLGLGLSIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797


>gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 906

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 170/422 (40%), Gaps = 44/422 (10%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
                   A    + ++ + +               +   A  +           + T  
Sbjct: 475 CACLGFERAVLYLIEQRHLRAVSAWINTGDADQIARLLADAASI--------PLESDTMS 526

Query: 136 YLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
              +     ++I+ ++  +     +   +F     V+  L      +        A  L 
Sbjct: 527 ADVVRSGQAVIISDVAPHSAPANAVQAPLFGREKRVIGLLVASFDAAGRAPTPRDAAQLM 586

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
           T                   L        L  ++    +       RA+E +  K +FLA
Sbjct: 587 TFAGMSGL-----------ALENTMLYAGLERQVAQRTAELRAALARAQEADRLKGQFLA 635

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHELRTPLNAI+GFS V+  E  GP+     +E +  I+R+G+ LL+LI+E+LDL+RI
Sbjct: 636 AVSHELRTPLNAIIGFSTVMLDEIDGPIT-PLQREDLKIINRNGRFLLHLIDELLDLARI 694

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+ +L  + + +  ++ E    +Q     + I +   +   L     D   +RQV+LN
Sbjct: 695 EAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACGDAARIRQVLLN 754

Query: 375 LLSNAVKFTAIG---------------------GRVHVTVGWTSGRGQYISIKDNGPGIA 413
           LLSNAVKFT  G                     G V V  G        +S++D G GIA
Sbjct: 755 LLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIAVSVRDTGIGIA 814

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +  +F Q      + + G GLGL I++ ++  HGG+  + S+  +G     ILP
Sbjct: 815 AEDLTRIFEAFNQVRSG--NRQHGSGLGLAISRRLIEAHGGRIWVESEPGKGSVFTFILP 872

Query: 474 NT 475
             
Sbjct: 873 CA 874


>gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
 gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
          Length = 1148

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 12/350 (3%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
           TL            +  S TL    ++  L  +               A     + S ++
Sbjct: 575 TLWTYLNSGLSAYLLLMSITLTFLATLLWLIYYHESQV-----LAQTAASLLPQLRSGYL 629

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAE 243
              S     +  ++++  +T    +   +  + Q       I   +   +     R+ A+
Sbjct: 630 KIFSALVFASAIIAWWLVLTGQSRRVAQEESNRQTGLLQREIELHQKTDAELQLARQVAD 689

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N AKSR++  +SHELRTPLN+ILG++++++ +T  P   ++  + I  I RSG+HLL+
Sbjct: 690 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDTSIP---DSRLQAIRVIRRSGEHLLS 746

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           LI   LD++RIE G+       +   + +++ + M +L+A+ K I    ++   L   V 
Sbjct: 747 LIEGTLDIARIEGGKLTFDIKPLRFPEFIKQIVSMFELQARNKGINFAYEVTSELPKMVR 806

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD+K + Q+++N+L NAVKFT  GG V   V + +     I I+D GPGI   EI +V  
Sbjct: 807 ADQKRLSQILINILGNAVKFTQHGG-VVFRVQY-ARELVQIEIEDTGPGIQTHEIDSVFE 864

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F +GS A      G GLGL I++ +    GG+  + S + +G      L
Sbjct: 865 PFARGSAAANDRIGGTGLGLTISKLLTQLMGGEISVNSVVGKGTIFKIKL 914


>gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1947

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 20/286 (6%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE--NLAKSRFLASMSHELRT 262
              L +   ++    AE +    E+E A+S  +E  K AE    +  KS FLA+MSHELRT
Sbjct: 1230 EELEQKARQLAEQNAEVERKNKEIEQARSALEE--KAAELALTSKYKSEFLANMSHELRT 1287

Query: 263  PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
            PLN+IL   + +     G L+ E   ++  +IH +G  LLNLIN+ILDLS+IE+G   + 
Sbjct: 1288 PLNSILILGQQLAENGAGNLS-EKQVDFARNIHSAGADLLNLINDILDLSKIESGTVAVE 1346

Query: 323  ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
               I+   +        +  A  KN+  +   DP+L      D K ++Q+I NLLSNA K
Sbjct: 1347 AEDITFASLRESVERNFRHIADNKNLPFYVDFDPALPRQFSTDSKRLQQIIKNLLSNAFK 1406

Query: 382  FTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGS 428
            FT+  G+V +     +                  +SI+D G GIA  +   +  +F Q  
Sbjct: 1407 FTSQ-GQVSMKAEAATEGWTVDHPVLKRAPNVIALSIRDTGIGIAPEKQRLIFEAFQQAD 1465

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                    G GLGL I++ +    GG+  + S   EG      LP 
Sbjct: 1466 AGTSRKYGGTGLGLAISRELATLLGGEIRLNSVPGEGSTFTLYLPL 1511


>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1124

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 26/302 (8%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----------SDETRKRAEEENLAKSRF 252
           +   +   N      + EK     E   A++               R+ AEE   AK+ F
Sbjct: 412 LGEVVLAFNRVADRMRTEKTQAEVESRRARAAEEEVRSRESELVRARQVAEEAVRAKAAF 471

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPLN ++G S ++    +    +   ++ +  I  S   LL +I++ILD S
Sbjct: 472 LATMSHEIRTPLNGVVGMSTLLAETAL----DAEQRDILQTIRLSSDQLLAVISDILDFS 527

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-----IDPSLSSVWADEKG 367
           +IE+GR++L    +S+ +++ E   +   RA+EK IE+              ++  D   
Sbjct: 528 KIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAAAGGPPPAILGDVTR 587

Query: 368 MRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422
           +RQ+++NL++NAVKFT  G   VH  +              S+ D G GI    +  +  
Sbjct: 588 LRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEFSVHDTGIGIPPERVGALFE 647

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   +      G GLGL I + ++   GG+  + SKL +G            L  +P
Sbjct: 648 AFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKGSIFSFT--VRAALAELP 705

Query: 483 ED 484
           ++
Sbjct: 706 KE 707


>gi|218676813|ref|YP_002395632.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218325081|emb|CAV26919.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 1010

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L    E      +   + R  AE+ + AKS FLA+MSHE+RTP+N +LG + +++   +
Sbjct: 441 QLQKTNEKLNVEVENHAKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            PL       Y   I+RSG++LL ++N++LD S+IEAG  E+  ++  L  +V++   ++
Sbjct: 501 DPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
           + RA EK +     I+ ++   W  D   + Q++ NL+ NA+KFT  G   + +++    
Sbjct: 557 EGRAAEKKLNFDFHIESNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIED 616

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GI   E   +  +F Q          G GLGL I++SIM    G   
Sbjct: 617 ENRVMFEVSDTGVGIDSKEQACLFDAFTQTGSGRN-KTGGTGLGLAISKSIMQAMNGDIG 675

Query: 458 IRSKLREGVEVIAILPN 474
           + S+  EG +    +P 
Sbjct: 676 VHSEEGEGSQFWFSVPL 692


>gi|167646501|ref|YP_001684164.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167348931|gb|ABZ71666.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 554

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 151/340 (44%), Gaps = 17/340 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             +  L+++A  +      +  +    + ALS         L  +    +       T  
Sbjct: 223 LAVPGLTLTAKPSASPSVPLHDARGVTIGALSWTPANPGMSLLKAALPAIVAVFLVLTLA 282

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  LF+   + L   A            +      +++AE  N+AK++FLA+MSHE+RTP
Sbjct: 283 SLVLFRRVAETLDRMA----------RGRESLVVAKEQAEAANVAKTQFLANMSHEIRTP 332

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG ++++E + +    ++  +E +  I  SG  LL L+N ILD++R+E G   L  
Sbjct: 333 LNGVLGMAQIMESDAL----SDRQRERLAVIEESGNALLALLNSILDMARLETGAIRLRR 388

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
            A  L  +V     +    A  K I++ Q + P     W  D   +RQV+ NL++NAVKF
Sbjct: 389 EAFDLGALVDSSCAVFSGAAVSKGIKLCQALTPESLGAWVGDPLRLRQVLGNLVANAVKF 448

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V V V  ++       + D G G+A  +   +   F Q   +   + +G GLGL
Sbjct: 449 TDS-GTVRVHVEESALG-LRFEVSDTGIGVAPQDQLRLFKMFSQVDSSSTRSHEGSGLGL 506

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            I   ++   GG   +RS   EG      LP  R     P
Sbjct: 507 AICHDLVELMGGAIGMRSVPGEGSTFFFDLPLQRAPAERP 546


>gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 624

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +  + R +AE  +  KS FLA+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 379 ITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSALLA----ATEDM 434

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I  + + LL LIN++LDLS++E+G  EL  S  +L +++ E +     +  
Sbjct: 435 AEKELYNSLISHNNELLLELINDVLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQLA 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+          V  D   ++Q++ N LSNA+K T   G V V     S     I 
Sbjct: 495 A-GVELRTHYLDQGFLVELDRLRIKQILNNFLSNALKNT-TSGYVEVFYEIDSS-YVRIG 551

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI +  +  +   F +      S  QG GLGLPI +SI+    G+    S+L  
Sbjct: 552 VRDTGRGIPQNMLEKIFERFEKVD----SFTQGAGLGLPICKSIVDKMNGRIWADSQLGI 607

Query: 465 GVEVIAILPNT 475
           G   +  LP +
Sbjct: 608 GTTFMVELPCS 618


>gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1837

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 5/267 (1%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +       E+    AE E   +     R+ AE  N  K  FLA +SHELR+PLN IL
Sbjct: 1426 RGVIGAFLDVTERKQAEAEREQLLARERSAREEAEAANRIKDEFLAVLSHELRSPLNPIL 1485

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G++ +++ +    ++++ + + +  I R+ +  + LI+++LD+SRI  G+ +L+ S++ L
Sbjct: 1486 GWANLLQRQ---KVDDQVFHQALTTIERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDL 1542

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            + ++   I  ++L A+ K+IEI   +D  +  V  D   ++Q++ NLLSN VKF+  GG+
Sbjct: 1543 VVVILSAIETVRLAAEAKSIEIRTHLDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQ 1602

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V + +    G    I ++D G GI    +P V   F Q          G+GLGL I   I
Sbjct: 1603 VDIYLESV-GNEAQIRVQDRGKGINPKFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYI 1661

Query: 449  MANHGGQFLIRSK-LREGVEVIAILPN 474
               HGG     S  + +G      LP 
Sbjct: 1662 TEMHGGTVQAESPGVGKGATFTVKLPL 1688


>gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
 gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
          Length = 1215

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244
            LA  L             L +SN ++    A       ++E+     ++TR+  EE    
Sbjct: 711  LAAELRARSEELQSRQDELQRSNAELAEKAALLARQNHDIEIKNFEIEQTRQEIEERARQ 770

Query: 245  ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  KS FLA+MSHELRTPLN++L  + ++       L+ +   EY   IH +G  L
Sbjct: 771  LALSSRYKSEFLANMSHELRTPLNSLLILARLLAQNPANNLSPKEV-EYANVIHSAGSDL 829

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
            L LIN+ILDLS++EAG+ ++     +L  ++ +   +     +EK +    ++ P +  +
Sbjct: 830  LQLINDILDLSKVEAGKIDIHLERFALSALLDDVQGIFCPIIEEKGLRFTVEVAPDVPDA 889

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQY----ISIKDNGPGIA 413
            + +D++ + QV+ NLLSNAVKFT +GG   R+ V         +      ++ D G GIA
Sbjct: 890  LVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVVSDRVLDDERRPAVAFAVIDTGIGIA 949

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            E  +  +  +F QG  +      G GLGL IA+ + A  GG    +S+  +G      LP
Sbjct: 950  EENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREVAALLGGVIRAQSEFGQGSTFTLYLP 1009

Query: 474  NT 475
             +
Sbjct: 1010 LS 1011


>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
 gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
           12472]
          Length = 738

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 8/240 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E ++ AE+   AKS FLA+MSHE+RTP+NAI+G S +     +    ++  + YIG IH
Sbjct: 2   REAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDL----DDQQRNYIGKIH 57

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +G  LL +IN+ILD S++EAG+ EL      L D++     ++  +A +K +E+  +  
Sbjct: 58  NAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETA 117

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQY-ISIKDNGPG 411
             +   +  D   + QV+ NL  NA+KFT  G    +   V     + Q    + D G G
Sbjct: 118 GDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGIG 177

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++E +   +  +F Q   +      G GLGL IA+ ++   GG  L+ S    G   I  
Sbjct: 178 MSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFS 237


>gi|325106876|ref|YP_004267944.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967144|gb|ADY57922.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 556

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 10/355 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W   T      W      I      L          F      F     +  A       
Sbjct: 41  WNCGTWTPIEGWLHITADIGIFLAYLAIPCALLYFAFRRKDVPFNGLLLLFSAFILCCGT 100

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  +  +     +         IT  +  + V +L   A K      L V      +   
Sbjct: 101 THLLEAVIFYSPIYRIAGLLKLITAVVSWATVVVLWRMAPKLLRYPSLAVDNEALKQA-- 158

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                + AKS FLA+MSHE+RTP+ AI+G +E++              + I  I R+  H
Sbjct: 159 -----SQAKSEFLANMSHEIRTPMTAIIGNAELLYELGDLERAPAERLDAIQAIKRNSSH 213

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL++IN+ILDLS+IEAG+            IV+E + +L +RA+ K + +  +++  +  
Sbjct: 214 LLDVINDILDLSKIEAGKLSHQLDRHDPQQIVQEVLDLLSVRAEAKQLVLSSRVEGLVPE 273

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGW-TSGRGQYISIKDNGPGIAEGEI 417
            +  D+  +RQ++LN++ NA++FT  G  +V +     T      + + D G GI +   
Sbjct: 274 TILTDDTRLRQILLNVVGNAIRFTKSGSVKVVMRFRETTQRNQLEMEVIDTGIGIDQETQ 333

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +   F Q   +      G GLGL I++ +    GG   + S+   G   +  +
Sbjct: 334 NRLFEPFTQADTSTTRQFGGTGLGLAISRRLARTLGGDLTLESEPGIGSRFLISI 388


>gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
 gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
          Length = 690

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 50/400 (12%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           V P   +   + I      L      A  + +    +F  F  +                
Sbjct: 152 VLPDEVSSSRVGILFFEYDLTRAKQQAFCDALRRSLMFNIFLTIFCLGLWLFFDLTLTRR 211

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---------LIAELEVAKSLSDE 237
           +SL    + +L+   +        + +++      D          LI + E+ K    E
Sbjct: 212 VSLLVAASNSLAEGNFNVRTRLLGSDELVQISVAFDHMASKIQENTLILQQELIKREIIE 271

Query: 238 TRKRA----------EEEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + +           E  +   AKS FL++MSHE+RTP+N ++  +E++ ++ +    +E
Sbjct: 272 AKLKETNEQLSISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLSMKNL----SE 327

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I  SG  LL +IN+ILD S+IE+G  +L E    L DI++    +L  +A  
Sbjct: 328 EQQDIVQTIRDSGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQAAT 387

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           KNI +   I+P + + +  D   +RQV+LNL+SNA+KFT   G V + V     +     
Sbjct: 388 KNIHLEYSINPDVPTNILGDATRLRQVLLNLISNAIKFT-EHGHVSIAVLANKHQEDQKI 446

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ISIKD G GI    +  +   F Q   +I     G GLGL I++S++   GG+  + 
Sbjct: 447 ELMISIKDTGIGIEHDRLNQLFQPFTQADTSISRKYGGTGLGLAISKSLVNLMGGKIWVE 506

Query: 460 S--KLRE----------------GVEVIAILPNTRVLNFI 481
           S   +                  G           VL   
Sbjct: 507 SLGNIGGHPPENWLSNWVNNHLPGSIFHFTFIAKVVLPSS 546


>gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 710

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 123/265 (46%), Gaps = 18/265 (6%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    + EL   +       + AE  N AK++FLA+MSHE+RTP+N ++G +E+     +
Sbjct: 288 EAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSHEIRTPMNGVMGMTELALQTDL 347

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +EY+    +S   LL++IN+ILD SRIEAGR EL+ +  SL   +  C+ + 
Sbjct: 348 TP----EQREYLDLARQSALSLLDIINDILDFSRIEAGRMELARAPFSLRRTLGSCLRLF 403

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----- 393
              A  +  ++   +       +  D   + QVI NL+SN +KFT   G V VTV     
Sbjct: 404 DNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVSNGLKFT-RDGSVRVTVDTAPP 462

Query: 394 -------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                            S+ D G GI   +   +   F Q    +     G GLGL I++
Sbjct: 463 LHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYFTQLDAGLSREAGGTGLGLSISR 522

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
           +++A  GG+  + S+   G      
Sbjct: 523 NLVALMGGRIWVESEPNRGSTFFFT 547


>gi|238925291|ref|YP_002938808.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
 gi|238876967|gb|ACR76674.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
          Length = 440

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 139/316 (43%), Gaps = 15/316 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                V   +            ++  +    +     +   L +  +K +   A   +  
Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190

Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           + ++      +        R + E       ++  F A++SHEL+TPL AI G++E+IE 
Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +  E    +  +I R+ Q LL+LIN+I+ LS +++   +     + L  +V++CI
Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCI 307

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             LQ+ A+++ + +       +  V  + + + +++ NL  NA+++   GG V+VTV   
Sbjct: 308 ENLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G    ++++DNG GI + +   V   F +   +      G GLGL I + I+  H    
Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGL 424

Query: 457 LIRSKLREGVEVIAIL 472
            + S++  G  +    
Sbjct: 425 TLDSEVGRGTTIKVEF 440


>gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1331

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            + AE  N  K  FL+ +SHELR+PLN ILG++++++++T+        K+ +  I  + +
Sbjct: 956  EEAERANRIKDEFLSILSHELRSPLNPILGWAQLLQIKTLDQTTT---KQALATIEHNAK 1012

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
                L++++LD++RI  G+  L E+ ++L+ ++   + +++  A  K++ +  ++   + 
Sbjct: 1013 LQTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAAALEVVKTAADVKSVTLQPELT-DIG 1071

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             V  DE  ++Q++ NLLSNA+KFT  GGRV + +     + Q I++ D G GI    +P 
Sbjct: 1072 QVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLEQVEDQAQ-ITVTDTGIGIQPQFLPH 1130

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVL 478
            +  SF Q   +I     G+GLGL I + ++  HGG     S    +G      LP  +  
Sbjct: 1131 IFESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGGTITAESPGENQGATFTVQLPLLKAA 1190

Query: 479  NFIP 482
            +  P
Sbjct: 1191 SPSP 1194


>gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1202

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L  + +        L ++NV++       +   A+L  A+       +R E+ +  KS F
Sbjct: 433 LLESQTRLEAQQAELEQTNVQLEEYANRLERQKADLLRAQDDLAANAERLEQSSRYKSEF 492

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   LL LIN+ILDLS
Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +S+   ++    + +  A  K++ +     P +  ++ +D + + Q+
Sbjct: 552 KVEAGQVNVELETVSIDATLQSLEELFKPLAGAKHLSLVFDRLPGVPDTMVSDGQRVTQI 611

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNAVKFT   G V ++V         I ++D+G GI   ++  +  +F Q   + 
Sbjct: 612 LRNLLSNAVKFT-AHGEVALSVAPADDDMLRIDVRDSGIGIPADKLEMIFEAFQQADGST 670

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++      GG+  + S++ +G      LP 
Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713


>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 1384

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 143/343 (41%), Gaps = 60/343 (17%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-----ETR 239
             + + G++   L+F++          +     +     +  ELE  K+ +D     + R
Sbjct: 599 APVMVGGLVYGTLNFWSPKPLRQPFKAIDKELLKLMAQWVGGELERQKTATDATDLAKAR 658

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             A     AKS FLA+MSHE+RTP+NA++G + ++   ++         E++  I  SG 
Sbjct: 659 DEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKS----DQTEFVETIRSSGD 714

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LIN+ILD S+IE+ +++L E    L   + E I +L  +  E+ +E+   IDP   
Sbjct: 715 ALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFIDPETP 774

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR--------------- 399
           + V  D   +RQ+++NLLSNAVKFT+  G V V+V                         
Sbjct: 775 TIVIGDVTRVRQILVNLLSNAVKFTSD-GEVLVSVSGRKLEIEENVQNLAVENISESDTC 833

Query: 400 ------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S+KD G GI    +  +   F Q   +      G GLGL I++ +    G
Sbjct: 834 DIWPAYEIQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAEMMG 893

Query: 454 GQFLIRS--KLRE----------------------GVEVIAIL 472
           GQ  + S   +                        G      +
Sbjct: 894 GQMWVESMGVVGGNPPATYRLPDLYEHSAAVNEKSGSTFYFTI 936


>gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 792

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPL+A++G+SE++  E       E   + +  I  S +HLL LIN++
Sbjct: 277 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 335

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAGR  L+     ++ ++ +     Q    +K        +  L ++  D+  +
Sbjct: 336 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 395

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425
           RQ ++NL+ NA KF+   G + + V      G      S+ D G G+ + +I  +   F 
Sbjct: 396 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 454

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   +      G GLGL I ++ +   GG   + S   EG      LP
Sbjct: 455 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 502


>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 648

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 145/310 (46%), Gaps = 19/310 (6%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +  A     +  +      A+ L  F      + +S     +   E   +I  ++V+ ++
Sbjct: 65  ALIASKEQKLPSVLSRVFNASPLPLFNQAKQLIKQSITVKPASMCESCSIIQVIDVSNAV 124

Query: 235 SDE--------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           + E         R+RAE     KS FLA+MSHE+RTPLN ++G  E++  E +    ++ 
Sbjct: 125 AREKALEKQVLERQRAEAA---KSAFLANMSHEIRTPLNGVIGMLELVADEPL----SDK 177

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++++     S + LL +IN+ILD S+IEAG+ ++      L+    + I      A +K
Sbjct: 178 LQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAANKK 237

Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI- 403
            I +         + V AD++ +RQ+++NLLSNA+KFT  G  V  V +     +   + 
Sbjct: 238 AISLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKIDSQTAQLV 297

Query: 404 -SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI    I  +   F Q   +I     G GLGL IA+ +    GG+  + SK+
Sbjct: 298 CKVLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSKV 357

Query: 463 REGVEVIAIL 472
            +G      +
Sbjct: 358 GKGSCFEFEI 367


>gi|86148721|ref|ZP_01066997.1| sensor protein TorS [Vibrio sp. MED222]
 gi|85833490|gb|EAQ51672.1| sensor protein TorS [Vibrio sp. MED222]
          Length = 1007

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L    E      +   + R  AE+ + AKS FLA+MSHE+RTP+N +LG + +++   +
Sbjct: 441 QLQKTNEKLNVEVENHAKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            PL       Y   I+RSG++LL ++N++LD S+IEAG  E+  ++  L  +V++   ++
Sbjct: 501 DPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
           + RA EK +     I+ ++   W  D   + Q++ NL+ NA+KFT  G   + +++    
Sbjct: 557 EGRAAEKKLNFDFHIESNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIED 616

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GI   E   +  +F Q          G GLGL I++SIM    G   
Sbjct: 617 ENRVMFEVSDTGVGIDSKEQACLFDAFTQTGSGRN-KTGGTGLGLAISKSIMQAMNGDIG 675

Query: 458 IRSKLREGVEVIAILPN 474
           + S+  EG +    +P 
Sbjct: 676 VHSEEGEGSQFWFSVPL 692


>gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 964

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 10/276 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             L  +    +  R  AE    AKS FLA MSHELRTPL  ++G  +++       L   
Sbjct: 422 EHLRESAQRLELARDAAERATKAKSDFLAVMSHELRTPLAGVIGVLDLLRNNPPAHL--- 478

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +EY      S + LL ++++ILD ++IEAG+  +        ++ +      +LRA+ 
Sbjct: 479 -LREYTAVARDSAESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEA 537

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402
           K +E       ++  V   D   +RQV+ NL +NA+KFT  G   V +T           
Sbjct: 538 KKLEFKHIFSANMPEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVF 597

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I+++D G GI +     +   F Q  ++      G GLGL I +++  +  G   + S+
Sbjct: 598 LIAVRDTGCGIDQATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESE 657

Query: 462 LREGVEVIAILPNTRVLN--FIPEDNHESTQYKCYA 495
              G     ++P  R  +   +P    ++   +  A
Sbjct: 658 PGRGATFTFVVPLARPRSDVVVPAATAKAPDLRSKA 693


>gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1048

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/315 (28%), Positives = 135/315 (42%), Gaps = 30/315 (9%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  L +    +       +    E+E  K   +   +  E  +  KS FLA+MSHELRTP
Sbjct: 576 TRALERQKQDVQQKNVLLEQTQTEMERTKKAIENKAQELELASKYKSEFLANMSHELRTP 635

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+IL  ++++E      L  E   EY   I  +G  LL LINEILDLS++EAG+ ++  
Sbjct: 636 LNSILILAQMLEENKAANLT-EQQVEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHL 694

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
             I L D+V          A+ K +     I+  L   +  D   ++Q+I NLLSNA KF
Sbjct: 695 ENIVLADMVMMVKQKFNHVAETKGVLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKF 754

Query: 383 TAIGGRVHVTVGW-----------------------TSGRGQYISIKDNGPGIAEGEIPT 419
           T   G V +T+                            +   IS+ D G GI + +   
Sbjct: 755 TNE-GEVKLTIQRPTERIPLLLTGISLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLM 813

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---- 475
           +  +F Q       +  G GLGL I++ +     G   ++S+  +G      +P      
Sbjct: 814 IFEAFQQADGTTSRSYGGTGLGLSISRQLARLLCGDIQLQSEEGKGSTFTFYVPENLEMI 873

Query: 476 RVLNFIPEDNHESTQ 490
           R L    +   E TQ
Sbjct: 874 RNLAVQQQSTTEDTQ 888


>gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
 gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
          Length = 844

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 159/321 (49%), Gaps = 21/321 (6%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-----RKRA 242
            L  + A +L         L    + ++   A     I++ + A+ L+          R 
Sbjct: 399 VLRELGAESLIVVALGIRDLQFGVLTLIQTDAAHRHKISDFKTAEELARRASIAIDNARL 458

Query: 243 ----EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               ++ + AKS F+A+MSHE+RTP+ A+LG+++++     G  N+    +++  I ++G
Sbjct: 459 YKIGQQASAAKSEFVANMSHEIRTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNG 514

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL++IN+ILDLS+IEAG+ E      +  +++ +   M+ +RA EK ++   +   ++
Sbjct: 515 SFLLDIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTI 574

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAE 414
              + +D K +RQ+++NL+ NAVKFT+  G + + + + +          + D G GI +
Sbjct: 575 PSQIESDPKRLRQILVNLIGNAVKFTSE-GSIRLVISYDASGEPPAIQFEVIDTGIGITD 633

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +   F QG  ++  A  G GLGL I+  +    GG   + SK   G      +  
Sbjct: 634 AQLSQLFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSGTTFTCQITA 693

Query: 475 TRVLNFI---PEDNHESTQYK 492
             V +     P++ H+++  K
Sbjct: 694 GLVESASLIQPQNKHKTSNDK 714


>gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 342

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 5/245 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E + A++ F++++SHELRTPL +I GF + +       L+   ++ ++  I      L 
Sbjct: 97  QELDQAQTDFVSTVSHELRTPLTSIKGFVDTLLRSG-SQLSEAQHRRFLRIIKNQADRLT 155

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ +IL +SRI++GR +     + L +++      L  +   + +        +L  VW
Sbjct: 156 RLVEDILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRREL--PGALPEVW 213

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTV 420
           AD+  + Q++ NL+ NA+K++  G  V V+           +I+++D G GI E  +  +
Sbjct: 214 ADQDRLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQI 273

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +    +    +G GLGL I +S++ + GG   + S+   G      LP  +    
Sbjct: 274 FNRFSRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLPAVQAGAI 333

Query: 481 IPEDN 485
            P + 
Sbjct: 334 EPGEE 338


>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
 gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
          Length = 937

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 24/366 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182
           LV      P  +  Y+   +LIA  +  L   +L    +      P+    +  Q + + 
Sbjct: 156 LVVELDNQPLQIARYRVLIVLIATGLLTLLLLLLCLNFYSRRWIAPMYEIRMQLQRLNAD 215

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236
            +    L             I   + + +   L  +   +    +L       +      
Sbjct: 216 TLDQHMLINSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITY 275

Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R +A   + +KS FLA++SHELRTPLN+I GF  ++  +     +      Y+  I 
Sbjct: 276 RQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNND---QNLYLQTIR 332

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S  HLL LIN++LD S+I+AG+ EL  +   L + + + + ML   A +K+I++     
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
            ++   V  D    +Q++ NL+SNA+KFT   G + V              + S++D+G 
Sbjct: 393 DNVPKHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEQDDIGQCLLHFSVQDSGI 451

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465
           G++  +   +  SF QG  ++     G GLGL I++ ++    GQ             +G
Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKG 511

Query: 466 VEVIAI 471
                 
Sbjct: 512 STFWFT 517


>gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 917

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 9/285 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            Y    +    +         +  +    VA+    + +K AEE N  KS FLA+MSHE+
Sbjct: 387 VYFESSIHYFTLNNQKIALSINHDVTSFRVAQEQMLQAKKIAEEANKTKSIFLANMSHEI 446

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN I+G S+++       +  E  +E    I    Q+LL+L+N ILD S+IEA + E
Sbjct: 447 RTPLNGIIGMSDLMLR---VKMTPEEQRETTKTIISCSQNLLHLLNNILDFSKIEAEKVE 503

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379
           +S +   L +I+ E I M ++RA+EK+++I       L ++W  D+  ++Q++ NL++NA
Sbjct: 504 ISSNVFDLKEIIGESINMYKIRAKEKSLDISAGFQDGLENLWIGDKVKIQQILNNLINNA 563

Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT   GR++V V   +  G       ++ D G GI + ++  +  +F Q   +     
Sbjct: 564 IKFTIE-GRINVLVNKLNDDGSCCELQFTVSDTGIGIEDKDLNKLFVAFSQVDGSYTRQF 622

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            G GLGL I++ ++   GG+  + S +  G      L  T+  + 
Sbjct: 623 GGTGLGLSISKKLVELMGGRIWVESTMGVGSRFNFTLKLTKANDS 667


>gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 765

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 17/313 (5%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +V+      +MS  ++   +   +         ++ +     +       E  D+I  + 
Sbjct: 231 IVLFSVIFFLMSFFIILFRIIYPIDLLRVAMLKLSSNDMSVELDKNKYDDEVGDMIGSVR 290

Query: 230 ----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                      ++       + A   N AKS FLA MSHELRTPLNAILGFS +++    
Sbjct: 291 IFKDNTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKSM- 349

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +  K  +  I RSG+HLLN+INEIL+LS+IEAG+ E+     +L +++ +   + 
Sbjct: 350 --NATQEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIF 407

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             R +EK +E    +D +L  V   DE  +RQ+++NLLSN++KFT   G + + + +   
Sbjct: 408 AFRCKEKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNE-GEISLYL-YEKS 465

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +  +  IKD G GI   ++  V   F Q        + G GLGL I + ++    G    
Sbjct: 466 QKLFFEIKDTGIGIESKDLKRVFKPFEQI-KHDDYNKNGTGLGLSITKELVTLMNGSIYA 524

Query: 459 RSKLREGVEVIAI 471
           +SK+  G +    
Sbjct: 525 KSKVNVGTQFYFS 537


>gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 463

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 13/308 (4%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             ++++L    +  + +  ++L   +   +   T     + +    +   +   D++   
Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKSMAQGRFDVRVSKRYDDEIGEL 227

Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +    ++ E   ++       K+ F+AS+SHELRTPL +I+G+   I    +   + E 
Sbjct: 228 GDTLNYMAQEVANQQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            KE +  I R  + L  L++E+LD S+ +AG   L +S ++L ++++     ++ RA+ K
Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +   +D  L  + ADE  ++QV +N++ N+ KFT  GG + + +G  +  G  I I+
Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E ++P V   F +GS  +     G GLGL I   I+  H G+  I S + +G 
Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455

Query: 467 EVIAILPN 474
            V  ILP 
Sbjct: 456 RVDVILPV 463


>gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 705

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 6/255 (2%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           ++ E+E            AE  N AKS FLA MSHE+RTP+N +LG +E+++   +    
Sbjct: 2   MLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTS-- 59

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++++  ++RSGQ LL +I++ILD S+IEAG+  L     +L  ++ + + +++  A
Sbjct: 60  --KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNA 117

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           Q K +E+  +   S+   +  D   +RQ++ NLL NA+KFT   G V ++  ++      
Sbjct: 118 QRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFT-EHGHVALSAAYSDDGRIV 176

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D+G GIA      +   F Q   +      G GLGL I++ +    GG   + S  
Sbjct: 177 FKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDSTP 236

Query: 463 REGVEVIAILPNTRV 477
            +G       P    
Sbjct: 237 GKGSVFTVTTPFEPA 251


>gi|91976985|ref|YP_569644.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91683441|gb|ABE39743.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 945

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 171/441 (38%), Gaps = 34/441 (7%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           L+  ++   G    + P         L    A + +G            + +W   L   
Sbjct: 251 LYRFILTGGGDVVLRAPGVLGLIAHVLLCTMAAMFIGI---------DRIAIWWRTLCTF 301

Query: 114 Q--IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
              +  G  +               L +   A  +IA+  S    F     V L+  P V
Sbjct: 302 SAILLAGSLFAAFGDYRTTVSITTVLQVVYEALWIIAVLDSWRRGFGNSRLVLLASGPAV 361

Query: 172 V--ALSTQAIMSMHVLDI------------SLAGMLATALSFFTYITYHLFKSNVKILSC 217
           V   L    I+ +                  +  +L  A+     I     K+   +++ 
Sbjct: 362 VRFFLYLGHILGIWPASWSVGSEITWNNLSIMLLLLFIAIGRLREIESARDKAQQDLVAF 421

Query: 218 QA-EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           Q  E++ L   ++            A E N AKS FLA MSHE+RTP+N +LG   +++ 
Sbjct: 422 QEHERERLQRAVDERTRELQTALVAAGEANRAKSDFLAVMSHEIRTPMNGMLGAIHLLKS 481

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +        +  +    R+G  +L  I  ILD ++I   + E S +A  L  ++ + +
Sbjct: 482 MPLQG----KVRTAVNVAERTGAAMLATIGGILDFAKISDSKPEPSYAAFDLRALLADVV 537

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            ++ LRA++K++ +   +D  L  +V  D   +RQ++LNL+ NA+KFT   G V V+   
Sbjct: 538 AIMSLRAEQKSVSLKLVVDQVLPATVMGDADLLRQILLNLVGNALKFTET-GEVCVSAAP 596

Query: 396 TS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            +       + + D G GI    +  +   F Q   +I     G GLGL I + +    G
Sbjct: 597 DAIHVDWIRLEVADTGIGIPRDRLDRLFEPFVQADSSIARRFGGTGLGLAICRRLTEAMG 656

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G     S+  +G      LP 
Sbjct: 657 GCITADSQPGQGSRFQVRLPL 677


>gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 681

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 132/238 (55%), Gaps = 7/238 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R  AE  + AKS F++ MSHELRTPLNAILGF++V++ E +      ++++Y+  I RS
Sbjct: 291 ARDEAERASRAKSDFVSRMSHELRTPLNAILGFAQVLDREPL----QASHQDYVRLIMRS 346

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQHLL L+N++LDL++IEAGR  L          + E   ++  RA +K ++   K+   
Sbjct: 347 GQHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAED 406

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L   V  D   +RQV++NL +NAVKFT   G V + +     +    SI+D G G+ E  
Sbjct: 407 LPSHVIGDPTRLRQVLINLTANAVKFTEA-GSVELAIDA-HDQRLLFSIRDTGIGMDEAA 464

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  +   FGQG  +I     G GLGL IA+ ++   GG+  + SK   G      LP 
Sbjct: 465 LGRLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLPL 522


>gi|160940248|ref|ZP_02087593.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436828|gb|EDP14595.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1118

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 16/316 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIA---ELEVAKSLSDETRK 240
                + +                ++ +  L    AEK   +    E + AK   +E   
Sbjct: 659 FRHGFSPLWLRLEVHMVASKEGRPRTAIIALRNISAEKQRELEYYDEEKKAKHALEEAYD 718

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                N AKS FL+ MSH++RTP+NAI+G + + +       N +  ++ +  I  SG H
Sbjct: 719 SLNRANQAKSDFLSRMSHDIRTPMNAIMGMTAIAQSNL---NNRDKIEDCLSKISLSGSH 775

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLS 359
           LL+LIN++LD+S+IE+G   LSE A  L ++V E  ++++     K  E+     +    
Sbjct: 776 LLDLINKVLDMSKIESGNVGLSEDAFCLEELVEEVSLIVKPDMDSKGQELSISLKEIDHH 835

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAE 414
           +V+ D   ++Q+++NLLSNAVK+T+  G + V++                ++D+G G+A 
Sbjct: 836 AVYGDAVRVKQILINLLSNAVKYTSDRGHIAVSLEEKLSSESGVGCFEFVVEDDGIGMAP 895

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +   F +   +  S  QG GLGL I ++++    G   + S+L  G   IA +  
Sbjct: 896 EFLEKLFMPFERAEDSRVSQVQGTGLGLAITRNLVQMMNGTIRVESQLNRGTRFIATIYL 955

Query: 475 TRVLNFIPEDNHESTQ 490
                   ED  E +Q
Sbjct: 956 KLAGE---EDTGERSQ 968


>gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM]
 gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM]
          Length = 618

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + E   +++    +    ++ +IN+
Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMIND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +          +K   I +++      
Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALW 493

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  +
Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLAKI 552

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612


>gi|260769147|ref|ZP_05878080.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
 gi|260614485|gb|EEX39671.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
          Length = 834

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 7/282 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +     +   +  +  A+  S   RK AEE    ++ FLA MSHELRTPLN ILG S++
Sbjct: 422 RIESIITQGQDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQL 481

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++         +   E +  +  SG+HLL ++N+ILD S+IE G++ + ++   L+D+V 
Sbjct: 482 LKRTV----TEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVS 537

Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
               + +   +EK + +    +      V  D+  + Q++ NLL+N+VKFT  G   + +
Sbjct: 538 AIERIYRPLCREKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQL 597

Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +  T       I++ D G GI E ++  +   F Q          G GLGL I  S++ 
Sbjct: 598 HLLETEAGAKLEITVLDTGIGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIE 657

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             GG   ++S    G      LP   V        H   + +
Sbjct: 658 MLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNEGKSR 699


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 184/445 (41%), Gaps = 23/445 (5%)

Query: 47  RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
           RV  +L + ++   ++  +F        +  + +      L               +  +
Sbjct: 29  RVGTLLIVLLMPFGSLLDYFVYPEQLGFFFFLRILCSVIALF----FWWIMKGPLGLRFY 84

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF---MLPYAV 163
           R++ L       +  +L+     G  +P Y  +      L  ++   +      +L   +
Sbjct: 85  RVFGLFLFALPSVFISLMIYYTEGVSSPYYAGLNLMLIGLSWVAQMYVVESLISVLLTLL 144

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                       +  ++  ++  I L G +    S+F      L +S  +  + + E D+
Sbjct: 145 IYGLACYFHGAVSIPLLFNNLYFIVLTGTIGVTGSYF------LNRSRYREYALRHELDE 198

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             +ELE +     E        + AK+ F A++SHELRTPL  ++G  + +      P  
Sbjct: 199 NRSELEASNLKLVE-------MDKAKTNFFANISHELRTPLTLLIGPLDRLRHNGDQPSA 251

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +E +  + ++   L+ LIN++L+L R+++G  +L  + + L   +          A
Sbjct: 252 KE-REELLDIMQQNAMRLMRLINDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPMA 310

Query: 344 QEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            E+ ++   +I+     +V  D   + +++LNLL NA+KFT  GG++ +      G    
Sbjct: 311 SERRLDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARR-DGEFLR 369

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D+G GIA  E+ ++   F Q   +     QGVG+GL + + +   HGG     S  
Sbjct: 370 IEVEDSGQGIAAEELASIFDRFWQAETSSNRRYQGVGIGLALVRDLARLHGGDVEASSVQ 429

Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487
            EG  +   L     +  +P +  E
Sbjct: 430 GEGTVMRVSLNAEVPVEPLPLEISE 454



 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 22/301 (7%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETR 239
              LD      L    S    +      ++V  +  Q E     L   LE  K    +  
Sbjct: 597 FQALDAGATDFLTKPFSSTELLARCRNLASVYEMQQQIEDRTVRLEKALEQIKQTETQMV 656

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM-GPLNNETYKEY-IGDIHRS 297
           ++A+  +L   +  A + HE+  PLN       ++       P       E  + D+H  
Sbjct: 657 QQAKMASL--GQLSAGLLHEVNNPLNFATTSIHLLRKRLGNSPHPEPELLEKPLTDLHDG 714

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + + ++++ + + +  +     +    + L   +   I  +Q+ A E  +         
Sbjct: 715 IRRVSSIVSSLREFTHPD----TVRFERVDLRTALNTAIRFVQIPAAEITLVQEL---EG 767

Query: 358 LSSVWADEKGMRQVILNLLSNAV----KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
              +  ++  +  V +NLL N+V    +    G  + +       R   +  +DNG GI+
Sbjct: 768 SPMISGNQNQLMHVFINLLQNSVDSLRERGGEGREIRIRCSEVEER-VSLVFEDNGMGIS 826

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             EI  V  +F       K   QGVGLGL I   I+  H G   + S+  E    I   P
Sbjct: 827 PDEIDRVFDAFF----TTKKVGQGVGLGLSICHRIIQQHKGSINVESEAGEWARFIMEFP 882

Query: 474 N 474
            
Sbjct: 883 V 883


>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 1032

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPIRLWEAYRHAVGRSS 482

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 651

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 652 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 771 TVALPLREA 779


>gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 513

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/456 (23%), Positives = 187/456 (41%), Gaps = 8/456 (1%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
                 L      +    RE+  L    LF  + ++   + L A             M  
Sbjct: 17  RAATSWLSRTGGGEAVRQRELAILRRLVLFSSAALIAAPIGLSAVTSPAVALPAGVAMVC 76

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L     +++L ++  ++ I       + +    G +        +  +         
Sbjct: 77  AAFLFSAVGSIALARQGSSAGIATQTAEDFFLDATPGLVFFLDPHGSVATIGGRDRRDFL 136

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             +           +      +   A+               I    V            
Sbjct: 137 AWMRDPKGRGFLEQVHVSDRILFLQALDSLRRGEDAECVDLRIDRPSVARDQR------- 189

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +     +     L+    +   ++  +  ++ +      AE  N AKSRFLA++
Sbjct: 190 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQNRVADAESANDAKSRFLAAV 249

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFS+++  E  G   N+  +EY+  +  SG HLL+++N +LD+S+IEA
Sbjct: 250 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEA 309

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GRYEL      +   V+ C  ML L+A+ K + +  +I   L  + AD++ ++Q+++NL+
Sbjct: 310 GRYELILEPFDIASSVKSCESMLALQAKTKGLTLTSRIQRGLGEIVADQRAIQQILINLV 369

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+KFT  GG V V           +++ D G GIA  ++  +   F Q         +
Sbjct: 370 GNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 428

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 429 GTGLGLSLVKGLVALHGGHFAIASQPGEGTIITIEI 464


>gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 764

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-V 230
           +A      +S           + T ++        L +S  ++++  A+       LE  
Sbjct: 436 LADGRWLQISERRTKDGGYVSVGTDITALKRHQERLVESERQLIATIADLKRSRRTLELQ 495

Query: 231 AKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + L+D        + +AE  N +KS FLA+MSHELRTPLNAILGF+EV++ E  G L  
Sbjct: 496 TQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGC 555

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E Y+EY  DI  SGQ+LL++I++ILD+SRIEA R  L++  + + +++   + ++   A+
Sbjct: 556 EKYREYCRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAAR 615

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K + +  +++   + V AD + + Q++LNLL NAVKFT   GRV V     +    +I 
Sbjct: 616 AKGLTLSVEMNAD-AVVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRR-ALDAVHIY 673

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G GI    +P +   F Q    +  + +G GLGL IA+S+   HGG+  IRS++  
Sbjct: 674 VEDSGIGIPRTVLPKLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHGGRLRIRSEVGS 733

Query: 465 GVEVIAILP 473
           G  V+  LP
Sbjct: 734 GTIVLVRLP 742


>gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 584

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 2/228 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+  I G++E +    +   + +  + ++  I      L  L+ ++
Sbjct: 359 RRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPQRAERFLLIIQNHADRLSGLVRDL 417

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS +E+G   +    ++L + +R+ ++++  R +EK +++ Q    +  +V AD   +
Sbjct: 418 LTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRL 477

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NLL NA+K++  G  V V      G    +S++D+G GI E ++P +   F +  
Sbjct: 478 EQVLINLLDNAIKYSETGKSVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVD 536

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            A      G GLGL I + I+  HGG   ++S+  +G      LP  R
Sbjct: 537 EARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLPLAR 584


>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 676

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D I + ++ +      R+ AE+ N  +S FLA++SHE+RTP+  I+G  E+I    +   
Sbjct: 118 DDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL--- 174

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E   EY   ++ S + LL L+N++LD S++E+G   +  +  +L D V + + ++ + 
Sbjct: 175 -DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISME 233

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A +K +EI   I   +   ++ D   ++QV+LN + NAVKFT   G V V+V        
Sbjct: 234 AHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTET-GYVSVSVKLVFENNS 292

Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D G G+   +   +  SF QG+ AI     G GLGL I+++I+ 
Sbjct: 293 DDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIIT 352

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              GQ  I+  +  G      +P        P ++
Sbjct: 353 MMKGQIGIKDNIPRGSVFWFKIPLVPSKKKAPHES 387


>gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
 gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
          Length = 514

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 156/279 (55%), Gaps = 1/279 (0%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A      +     ++    L     +   + E+E+ +         AE  N AKSRFLA+
Sbjct: 190 AQFIHARMEMTAIRNAAGRLRRVVAQLSDVTEMELLRRDVARKAAEAESANDAKSRFLAA 249

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLNA+LGFS+++  E  G L N+  +EY+G I +SG HLL+++N +LD+S++E
Sbjct: 250 VSHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLE 309

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGRYEL   +  + + +  C  ML L+A+EK + +  +I   +  + AD++ +RQV++NL
Sbjct: 310 AGRYELMMESFPIGETISSCEAMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINL 369

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
             NA+KFT  GG V +      GR   +++ D G GIA  +I  +   F Q         
Sbjct: 370 AGNAIKFTDAGGVVSIDAAR-EGRMLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRY 428

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +G GLGL + + ++A HGG F I S+   G  V  +LP 
Sbjct: 429 EGTGLGLSLVKGLVALHGGTFAITSQPGAGTVVTIMLPA 467


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
 gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 149/346 (43%), Gaps = 37/346 (10%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQ-------AIMSMHVLDISLAGMLATALSFFTYITY 205
            + +  L     +  +P+ + +           + SM+ L +  A  L   +  F     
Sbjct: 263 FMQSHWLGIHRPVRNWPMYLEIGVTDEVYFGEWMESMYPLMLVAAISLVGLIGGFVLTWR 322

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            + +     L                  L+   ++ A+  N AKS FLA +SHE+RTP+N
Sbjct: 323 QVRRREEDAL------------------LATRLKEEADHANEAKSHFLAMVSHEIRTPMN 364

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ILG SE++    +        ++Y   IH +   L+ +IN+ILD S+IE+G+ +L   A
Sbjct: 365 GILGLSELLMESGLSS----KQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVA 420

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              + +V+E   + +   Q K+++    +D P   SV  D   ++QV+ NLLSNA+KFT 
Sbjct: 421 FHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQ 480

Query: 385 IGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
             G V +++              + +I D G GI+   +  +   F Q   +I     G 
Sbjct: 481 A-GHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGT 539

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           GLGL I+++++   GG    +S   E       +         PE 
Sbjct: 540 GLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPAPEP 585


>gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 513

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 190/456 (41%), Gaps = 8/456 (1%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
                 L      +    RE+  L    L   + ++   V L A             M  
Sbjct: 17  RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVC 76

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
              L     +++L ++  ++ I       + + +  G +        +  V         
Sbjct: 77  AAFLFSAVGSIALARQGSSAGIATQSAEDFFLSVTPGLVLFLDPHGSVATVGGRDRRDFL 136

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             +           +      +   A+         A     +    V            
Sbjct: 137 AWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQR------- 189

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +     +     L+    +   ++  +  ++ +      AE  N AKSRFLA++
Sbjct: 190 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 249

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFS+++  E  G   N+  +EY+G +  SG HLL+++N +LD+S+IEA
Sbjct: 250 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 309

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GRYEL   A  +   VR C  ML L+A+ K + +  +I   L  + AD++ ++Q+++NL+
Sbjct: 310 GRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLV 369

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NAVKFT  GG V +           +++ D G GIA  ++  +   F Q         +
Sbjct: 370 GNAVKFTEAGGVVSIDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 428

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 429 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 464


>gi|34497406|ref|NP_901621.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34330344|gb|AAQ59623.2| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 562

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++A+      R +A   N AKS FLA+MSHE+RTP+N +LG  E++ +  +    +
Sbjct: 6   ITERKMAEFELRMARDQANAANRAKSAFLATMSHEIRTPMNGVLGMLELLAMTRL----D 61

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I  S   LL LI++ILD S+IEA R E+  +  ++   +     +    A 
Sbjct: 62  AEQSDTVATIQDSANTLLRLIDDILDFSKIEADRLEIVPTRTAIRPFMDSVRSLYHENAS 121

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           +K +E+   +D  L  ++  D   +RQ++ N +SNA+KFTA G   + V V  T    Q 
Sbjct: 122 KKGLELTLTLDDKLAPTLVIDPLRVRQILQNFISNAIKFTASGKVDIRVKVMDTVANYQV 181

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               ++D G G+++ ++  +   F Q          G GLGL I + +    GG   + S
Sbjct: 182 LSFEVEDTGIGMSQEQLSKLFQPFTQADSETTRRFGGTGLGLAICRRLAGLMGGHVEMES 241

Query: 461 KLREGVEVIAIL 472
           +  +G     +L
Sbjct: 242 EQGKGSCARLLL 253


>gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 15998]
 gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 11379]
          Length = 1809

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1162 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1221

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1222 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1281

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1282 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1341

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1342 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1400

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1401 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1460

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA  ++ 
Sbjct: 1461 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1520

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP  R 
Sbjct: 1521 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1579


>gi|163813932|ref|ZP_02205326.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
 gi|158450802|gb|EDP27797.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
          Length = 726

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 28/290 (9%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +  +L   + +   I +   +S +  +   AE   L                     N 
Sbjct: 303 LVVALLIGLVYWQFAIRHRKEQSYMAEIEKTAENARL--------------------ANE 342

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK+RFL +MSH++RTP+NAI+GF+++++       + +   EY   I  SG  LL++IN+
Sbjct: 343 AKTRFLFNMSHDIRTPMNAIIGFAQLLKDH---ADDKDKVNEYTSKISASGSVLLSIINQ 399

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L+++RIE+G  EL+E   +L ++      + +     K +     +  +   V  DE  
Sbjct: 400 VLEMARIESGEAELNEEVGNLRELTESIKAVFEPEISRKKLSCDYLVKVTEEFVSYDETK 459

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLT 422
           +R+++LN++ N+VK+T  GG + V V   S   Q       ++ D G G++E  +P +  
Sbjct: 460 VREILLNIIGNSVKYTPDGGNISVRVEQISKGDQGSASYRFTVADTGIGMSEEYLPHIFE 519

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F +   + ++  +G GLGLPI +S++   GG   ++SK+  G     +L
Sbjct: 520 EFTRERTSTETRVEGTGLGLPIVKSLVDMMGGSIDVQSKVGVGTTTTIVL 569


>gi|119471453|ref|ZP_01613894.1| hypothetical tryptophan-rich sensor protein [Alteromonadales
           bacterium TW-7]
 gi|119445552|gb|EAW26837.1| hypothetical tryptophan-rich sensor protein [Alteromonadales
           bacterium TW-7]
          Length = 903

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 20/321 (6%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +AL    I   ++       ML TA+     +   LF           ++  L  ++   
Sbjct: 467 LALKENYISQQNIEMSLFLLMLQTAVCLLIIVVLMLFNQ---------QQLALSRQVAER 517

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            S   + +K+++  N AKS+FLA+MSHE+RTPLNAI+G S + +       + +    YI
Sbjct: 518 TSSLVKAKKQSDLANSAKSQFLANMSHEIRTPLNAIIGLSSLAKKG----DDAQKLFSYI 573

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+ S   LLNLIN++LD+S+IE+    L   A     +V     M +  A+ KNIE  
Sbjct: 574 KKIYSSSNSLLNLINDVLDISKIESQHLILESIAFDPKALVTRIDTMFEQSAKNKNIEWI 633

Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKD 407
            K + P  +    D   + Q++LNL SNA+KFT  G   + +   + S     +S  + D
Sbjct: 634 LKCNLPVDTWFLGDAMRIEQILLNLCSNAIKFTNEGSVTLDIDTEFVSANKVKLSIAVSD 693

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI + +  T+  +F Q   +      G GLGL IA+ +    GG   ++S+L EG  
Sbjct: 694 TGIGIEKSQHNTLFNAFTQADSSTSRKFGGTGLGLTIAKELCLLMGGTLNLKSELGEGST 753

Query: 468 VIAILPNTRVLNFIPEDNHES 488
                    +    P+   E+
Sbjct: 754 FTF---AVNLTTTEPDIEPEA 771


>gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
 gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
          Length = 621

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + +F++++SHELRTPL ++  + E +        + +   E++         ++ +I
Sbjct: 374 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 431

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355
           N++L LSR+++G  +L    +++  +V   +    +  ++  I           I +   
Sbjct: 432 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFT 491

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NA+K++  GG +   +  T      +SI D G GI + 
Sbjct: 492 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 550

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  V   F +   A   A+ G GLGL I++ ++  H G+  + S   +G      LP  
Sbjct: 551 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 610

Query: 476 RVLNF 480
                
Sbjct: 611 EYSEE 615


>gi|310659191|ref|YP_003936912.1| sensor protein [Clostridium sticklandii DSM 519]
 gi|308825969|emb|CBH22007.1| Sensor protein [Clostridium sticklandii]
          Length = 427

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R + E     +S F+A+++HEL+TPL +I GF E ++      +N     +++  I   
Sbjct: 190 ERIKLETI---RSDFVANVTHELKTPLTSINGFVETLKSNAG--INKAMRTKFLDIIEVE 244

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  LI++IL LS IE  +   S   ++  D + ECI ++    ++KN+ I      +
Sbjct: 245 SNRLQRLIDDILILSFIEGNKSHYSNEPVNFADTINECINLVSETIKDKNVTIDFSPIDN 304

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              + ++   M+Q+ILNL+ NA+K++   G V +T+     +    S++D+G GI   +I
Sbjct: 305 QIYLKSNPDLMKQLILNLIDNAIKYSKEEGFVRLTL-LEDSKKVLFSVEDDGIGIPSEDI 363

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F +   A      G GLGL I + I+ N  G   + S+L +G + I   P 
Sbjct: 364 DRIFERFYRVDKARSKKVGGTGLGLAIVKHIVLNLNGNIKVHSELNKGSKFIIEFPK 420


>gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 752

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI + +  +    + +++ EE N  KS FLA+MSHE+RTPLNAI+GFS ++         
Sbjct: 509 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 563

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E  KE+   I  + + LL L+N+ILDLS+IEAG+ +   S  ++  + R      Q R 
Sbjct: 564 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 623

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
           ++  + ++ +I      +++++  + QVI N L+NA KFT  G    + +G+     G Y
Sbjct: 624 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 679

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G GI    +P V   F +      S  QG GLGL I Q+I+ N  G+  + S+ 
Sbjct: 680 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILDNLHGKIGVESEE 735

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 736 GKGSTFWFTIPCA 748


>gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 479

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 21/335 (6%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
           T++I+ +          +        V  AL   +I++  +     A            +
Sbjct: 159 TVVISNAEEDFLAQTNRWLWISGGLAVAGALLIASILASQISRPLRALNAGARELAAGNL 218

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           ++ +  S        AE  +++A                E+   ++ R LA ++HELRTP
Sbjct: 219 SHRVKVSANDETGRLAESFNVMAS-------------ALEKSEQSRKRLLADVAHELRTP 265

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  I G  + +    +      T ++ +G I      L  LI ++ DLS  EAG+ +L +
Sbjct: 266 LTVINGTVDAMMDGVL-----PTDEQQLGTIKEESLLLTRLIADLRDLSLAEAGQLKLDK 320

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           S I L D+V   +   +L A+ +NI +       L SV  D   + QV+ NLLSNA++ T
Sbjct: 321 SVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLPSVNGDWVRLEQVLANLLSNALRHT 380

Query: 384 AIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             GG V V +   S  G     +++ D G G+   ++  +   F +   +    E G GL
Sbjct: 381 PAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPEDLKHIFDRFYRVEDSRSRDEGGAGL 440

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I + ++  H G+  + S    G      LP  
Sbjct: 441 GLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLPAQ 475


>gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
 gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
          Length = 616

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 7/235 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL +I  ++E +               ++  I      ++
Sbjct: 372 EKTEQERRDFVSNVSHELRTPLTSIKSYTEALREGAWQDEVIAPQ--FLNVIQLETDRMM 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK----NIEIFQKIDPSL 358
            +I  +LDLS+I  G+Y+L+   I    +V   +   +   ++       ++ +      
Sbjct: 430 RMIGNLLDLSKIHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSRE 489

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D+  + QVI N+L+NA+K++  GG + V +   S    ++SIKD G GI + +IP
Sbjct: 490 IYLEIDQDRVTQVIDNILNNAIKYSPDGGVIVVKIE-DSHSHVHLSIKDQGLGIPQKDIP 548

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   A    + G GLGL I++ I+  HGG+    S   +G      LP
Sbjct: 549 HLFQRFYRVDKARSREQGGTGLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603


>gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1804

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 165/412 (40%), Gaps = 47/412 (11%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L E        L +    T+L  + +++   F      FL+    ++  S   I     
Sbjct: 1218 GLGEASPAHVIVLPVRFEGTVLGVVELASFQPFTQIQRDFLNQIAEMIGTSVNTISVNTK 1277

Query: 185  LDISLAGMLATALSFFTYITYHLFK-----SNVKILSCQAEKDDLIAEL-EVAKSLSDET 238
             ++ L                   +     ++   L  +AE         EV  +  +E 
Sbjct: 1278 TEVLLKQSQELTEQLRERSAELENRQSALQASNAELEDKAELLAQQNRDIEVKNTEIEEA 1337

Query: 239  RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            R+  EE           KS FLA+MSHELRTPLN++L  ++++       L+     E+ 
Sbjct: 1338 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLS-PKQVEFA 1396

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V       +    EK ++  
Sbjct: 1397 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1456

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-------------------VHV 391
             ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G                     + V
Sbjct: 1457 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1516

Query: 392  TVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         S+ D G GIA G++  +  +F Q          G GLGL I++ I  
Sbjct: 1517 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1576

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRV------------LNFIPEDNHESTQ 490
              GG+    S+   G      LP   +             +  PE+   + Q
Sbjct: 1577 LLGGEIHAASEPGRGSTFTLYLPLRPIELPSSNGQGPGAESPAPEEAAPARQ 1628


>gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
          Length = 942

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 187/462 (40%), Gaps = 42/462 (9%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
           ++L      +V  +   +  +V              +W    L        L   V    
Sbjct: 224 LSLFFSIREKVYLLYVCWSAVVTLFMAVLHGYAQRYLWPHSILISQYIIHYLLPLVALLP 283

Query: 98  IKIGEV-----YVWRIWLLVGQIAIGLCWTLLTLVEPG------TWTPEYLTIYKSATLL 146
             +               +  +I IG+   L               +   + +   +  L
Sbjct: 284 PLLALHFLSLQEKSPRLAVWLRILIGIGTILFLATPFTSRTFLIPISASAILLMDFSIFL 343

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA------GMLATALSFF 200
           I L  +   +          F  +V A +        +    L       G+    +   
Sbjct: 344 IGLIRTRAGDPDARIFTLAWFCFIVGAATIALNKYGLIPRNILTENLMQIGVFLEVVLLS 403

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   + +  +K     + +D  IAE+E  K+ +          N AKS FLA+MSHE+
Sbjct: 404 LALARRINR--LKEAHSNSVRDRAIAEMEAFKAGAR---------NHAKSEFLATMSHEI 452

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N I+G ++++    M     +  ++Y+G I++S Q LL +IN+ILD S+IE+G+ E
Sbjct: 453 RTPMNGIMGMTDLLRRTDM----TQQQEQYVGTIYQSTQSLLRVINDILDYSKIESGKLE 508

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L   +I+L +IV +C+ +  L + EK + ++  ID  +   +  D   ++Q+I NLLSNA
Sbjct: 509 LDYRSIALENIVDDCVRLFALHSSEKGLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNA 568

Query: 380 VKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            K T   G + + V               I + D G G+ EG+  ++  +F    ++ K+
Sbjct: 569 FKCTDR-GHIALHVNLKQPPNNKGVCMLMIEVVDTGIGLDEGQQSSLFQAFT--DLSAKT 625

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              G GLGL I + ++   GG+  + S L  G      LP  
Sbjct: 626 KHNGAGLGLVICKRLIELLGGEIGVSSSLGRGATFWISLPVE 667


>gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:CHASE3
           [Pseudomonas syringae pv. syringae B728a]
          Length = 1172

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ + A  GG   + S   +G     +LP   V  
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723


>gi|56420908|ref|YP_148226.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380750|dbj|BAD76658.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 468

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 11/342 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT- 204
           ++A+ +  L    L  A++L      V  +T+   +      ++       +        
Sbjct: 130 VMAVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAAAFWPLAAIFAAALLVVGRRMVRQM 189

Query: 205 ----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMS 257
                 + ++  ++   + E D  +   +    L++   + A+    E+  K  FLA++S
Sbjct: 190 TEPLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVS 249

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPL+ + G+SE +          E  K Y+  IHR  + +  L+ ++LDL+R+E  
Sbjct: 250 HELRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQ 307

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
              L  + ++   ++ + I   +  A +K IE+  ++D  +  V  D   + QV+ NLL 
Sbjct: 308 SVPLERAPVAFAQVIEDVIATYEPIASQKRIELACELDYDII-VNGDADRLEQVVRNLLD 366

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+++T  GG V V +   S     + I+D G GI + ++P +   F +   A    E G
Sbjct: 367 NAIRYTPEGGAVTVRLSRLSEAEGELVIQDTGKGIPKDQLPLLGQRFFRVDRARTRKEGG 426

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I + I++ H G     S L  G+ V   LP  R   
Sbjct: 427 TGLGLAIVKQIVSLHDGAIWFDSDLGRGMTVFVRLPLVREEE 468


>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 756

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 9/255 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +  +    E R  AEE    K  FLA+MSHE RTP+N ++G +++++   +  
Sbjct: 352 ERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDL-- 409

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  + Y   I  S + LL LIN++LDLS + A    L      L   V + + +L  
Sbjct: 410 --SEDQRLYTDTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSG 467

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EK++E+  +IDP +   V  D++ +RQ+++NLL NAVKFT   G + + +       
Sbjct: 468 QADEKHLELSVEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFT-TSGSIFIRLRGVVTGD 526

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           Q    I ++D G GI   ++  +   F Q   AI     G GLGL I++ +    GG   
Sbjct: 527 QVALKIEVEDTGIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDID 586

Query: 458 IRSKLREGVEVIAIL 472
           + S   EG     +L
Sbjct: 587 VTSVEGEGACFTLML 601


>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
 gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
          Length = 894

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-----SCQAEKDDLI-----A 226
              +   + D +      T   + +      F  + + +          K  LI      
Sbjct: 580 TFGLPPELADPAFTDFPMTREVWSSRRGRRWFSFDRRTVFNAQGESGGTKLALICLYDVT 639

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             + A+      R++A      + +F+A+ SHELRTPLNAI+GFSE+I+++T GP+ +  
Sbjct: 640 AYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQTFGPVGDTR 699

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y+EY  DI  +G+HLL+LIN+IL L R++ G    +++ + L D +R+ + M++ +A+ +
Sbjct: 700 YQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMVEDQARAR 759

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +I +  +  P    +  + + +RQ++LNLLSNAVKFT  GG+V V +G   G   ++ I 
Sbjct: 760 SIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGHDGEDLWLEIS 819

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIAE ++  V   F +       + +G GLGL I +++M  HGG+  +RS+  +G 
Sbjct: 820 DTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAHGGRVSLRSRYGQGT 879

Query: 467 EVIAILPNTR 476
            +   LP+ R
Sbjct: 880 TLRITLPSWR 889


>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
          Length = 927

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
 gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
          Length = 1207

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 8/258 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + +  D+    +  K         AE+ N AKS FL+ MSHE+RTP+NAI+G +  I  +
Sbjct: 647 RTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMNAIIGMT-AIAAQ 705

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +G  N+E   + I  I  S + LL+LIN+ILD+SRIE+G+  L    I   + +     
Sbjct: 706 ALG--NDEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDKIPTEEFLNGINS 763

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393
           +   +A  K++E    +DP L   +  D   ++QV++N+L NA+KFT  GG+V  +    
Sbjct: 764 ICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTREGGKVTFSAAVK 823

Query: 394 -GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               +       I D G G+ E  +P +   F Q S    S   G GLGL I++SI+   
Sbjct: 824 RKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGLGLAISKSIVDLM 883

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  +RS    G E   
Sbjct: 884 DGKITVRSIKGLGTEFTV 901


>gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1763

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 165/412 (40%), Gaps = 47/412 (11%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L E        L +    T+L  + +++   F      FL+    ++  S   I     
Sbjct: 1177 GLGEASPAHVIVLPVRFEGTVLGVVELASFQPFTQIQRDFLNQIAEMIGTSVNTISVNTK 1236

Query: 185  LDISLAGMLATALSFFTYITYHLFK-----SNVKILSCQAEKDDLIAEL-EVAKSLSDET 238
             ++ L                   +     ++   L  +AE         EV  +  +E 
Sbjct: 1237 TEVLLKQSQELTEQLRERSAELENRQSALQASNAELEDKAELLAQQNRDIEVKNTEIEEA 1296

Query: 239  RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            R+  EE           KS FLA+MSHELRTPLN++L  ++++       L+     E+ 
Sbjct: 1297 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLS-PKQVEFA 1355

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V       +    EK ++  
Sbjct: 1356 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1415

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-------------------VHV 391
             ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G                     + V
Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1475

Query: 392  TVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         S+ D G GIA G++  +  +F Q          G GLGL I++ I  
Sbjct: 1476 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535

Query: 451  NHGGQFLIRSKLREGVEVIAILPNTRV------------LNFIPEDNHESTQ 490
              GG+    S+   G      LP   +             +  PE+   + Q
Sbjct: 1536 LLGGEIHAASEPGRGSTFTLYLPLRPIELPSSNGQGPGAESPAPEEAAPARQ 1587


>gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 779

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 12/293 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDET------RKRAEEENLAK 249
            T I  H  K     L  +A   DL        + A  L+D        + RAE+ N AK
Sbjct: 478 ITRIKEHEQKLVENDLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRAEDANRAK 537

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S+FLA+MSHELRTPLNAI+GFSE++     G L +  Y EY  DI  SGQ+LL +IN++L
Sbjct: 538 SKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVINDVL 597

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S+IEAGR  L    + L  ++ E + ++  R  +K +    + D  + S+ AD + ++
Sbjct: 598 DMSKIEAGRTNLDMETLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRRAVK 656

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNAVKFT   GR+             ++I D G GIA   +  +   F Q   
Sbjct: 657 QIMVNLLSNAVKFTPASGRIMAR-SKVFENSVTLTIADTGIGIAPHALRRLGKPFEQVES 715

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +     G GLGL IA+S++  H G   IRSK   G  V   LP  R     P
Sbjct: 716 QLTKTHAGSGLGLAIAKSLVNLHSGSMRIRSKPGAGTVVRVTLPRHRQARRRP 768


>gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 614

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  E +  KS F+ + SHELRTPL +I    ++++ +    L++   ++ +       Q 
Sbjct: 383 RLRELDRLKSEFVMTASHELRTPLTSIGMSIDLLKDKAGSKLSDRE-RQLLTVAQEDVQR 441

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+NE+LDLS+IEAG+ E+    + L  I  +   ++  +A++  +E+    D  L  
Sbjct: 442 LKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGLPE 501

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   +  V++NL+ NA++ T   G V V     +GR  ++S+ D+G GI       +
Sbjct: 502 VRVDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIPLEFQTKI 560

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F Q      S+  G GLGL I + I+  HGG   + S   +G      +P   
Sbjct: 561 FDKFVQVKSRRTSS--GTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVPIAE 614


>gi|317151836|ref|YP_004119884.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942087|gb|ADU61138.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 533

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 19/274 (6%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           KS  K+     E +    EL    +      K+A+    AKS FLA+MSHE+RTPLNA+L
Sbjct: 258 KSEDKVRRRTRELERANEELTSKSARLVAAMKKADAATRAKSAFLANMSHEIRTPLNAVL 317

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +E+         +     E +  +  +G  LL +IN+ILD S+IEA +  L      L
Sbjct: 318 GMAELALR----VQDEARKNECLERVLEAGTSLLTVINDILDFSKIEARKLTLERIDFDL 373

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            DI+R  + M +L A +K + +  ++   +   V  D   +RQV++NL++NAVKFT  GG
Sbjct: 374 RDILRTALDMHRLHATDKGLGLTAEVGDDVPEAVLGDPGRLRQVLVNLVANAVKFTDAGG 433

Query: 388 RVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            V V +G    +                  + D G GI + +   +  SF Q   +I   
Sbjct: 434 -VTVRIGLAPDQPADLSGLAPGQPLRLRFEVADTGIGIPKRKRRAIFKSFLQADDSITRK 492

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
             G GLGL I + ++    G   + S   EG   
Sbjct: 493 HGGTGLGLAICKLLVELMHGSLDVESVEGEGSTF 526


>gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 2607

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 131/242 (54%), Gaps = 2/242 (0%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E + AK +F++ +SHELRTPL AI G+ +V+ L     L ++    Y+G I  +   L  
Sbjct: 2367 EADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTSDQV-SYLGIIKNNTNRLKA 2425

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LI +IL+ SR +A + +L+ + +S+ +++ E +  L+L  Q K++ +       L +V A
Sbjct: 2426 LIEDILEFSRPDASK-KLNFTRLSIPEVIDEVVSSLRLEYQRKDMSVEVDAPHDLPTVMA 2484

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D+K + QV+ NL SNAVK+T  GG +HV           + ++D G G++  +   +   
Sbjct: 2485 DQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVDVEDTGVGMSPEQRKKLFRP 2544

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F +    ++    G GLGL IA++++  HGG+  + S++ +G     ILP  +      E
Sbjct: 2545 FYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGKGSTFSFILPLQQTDVNQEE 2604

Query: 484  DN 485
            D 
Sbjct: 2605 DA 2606


>gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
 gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
          Length = 2100

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 166/392 (42%), Gaps = 24/392 (6%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               +LV  +   +      +      +   L ++    +   + +++   F      FL 
Sbjct: 1277 ARRILVTDLPENVVPISSGVFTTLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLD 1336

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + +   +I +    +  L      A +        L ++N ++     + ++   
Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395

Query: 227  ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+E      ++ R+  EE        +  KS FLA+MSHELRTPLN+IL   + +     
Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G L+ +   E+   IH +G  LLNLI++ILDLS+IE+G   +    I + +++       
Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVNNLLEVMARPF 1514

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ +N+    ++   ++  +  D K ++Q++ NLLSNA KFTA GG V + V   + 
Sbjct: 1515 RHEAETRNLSFAVEVGADVAKSIITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573

Query: 399  RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                               + D G GI   +   +  +F Q   +      G GLGL I+
Sbjct: 1574 GWSSDHPSLRHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            + +    GG+  +RS    G   +  LP T V
Sbjct: 1634 RELANLLGGEIQLRSTPGVGSTFVLYLPLTYV 1665


>gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLA+MSHE+RTP+N+I+G ++++    +    +   KEY+  I  S + LL +IN+IL
Sbjct: 179 TEFLANMSHEIRTPMNSIIGMTQLLAYTEL----SAEQKEYVEGILTSSEGLLAIINDIL 234

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           DLS++EAG+ EL     SL   + E I      A EK +++   I   +  +V  D   +
Sbjct: 235 DLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRL 294

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFG 425
           +QV+LN++ NA+KFTA G   V V +         I  S+ D G GIA   +  +   F 
Sbjct: 295 KQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFA 354

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           Q   +      G GLGL I+  ++   GG+    S+   G      +P  
Sbjct: 355 QEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAESRKNAGSTFHFEIPFR 404


>gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 1027

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 10/295 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                    +   +  S +  +  Q+    L  ++           + A   N +KS F+
Sbjct: 465 TVIAPSVAALIRDITASRMNEIKIQSMNQSLELQVAERTQELKHATELAIAANQSKSAFV 524

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A++SHE+RTPLN I G  E+++ E +    ++    Y+     S   L  LIN++LDLS+
Sbjct: 525 ANISHEIRTPLNGIAGMMELLQREDL----SDKQLNYLKMAKSSVSTLTVLINDLLDLSK 580

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372
           IE+G+ ++     +LI+ +   I  + LR  EK +E+           + +D   ++QV+
Sbjct: 581 IESGKLDIELVQFNLIETMSSVINSMALRCDEKGLELLFDWTQIQHEELISDAYRIKQVL 640

Query: 373 LNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +NL+ NA+KFTA  G++ V+              + I D G G+   +   +   F Q  
Sbjct: 641 VNLIGNAIKFTAQ-GQIVVSAKTYAAAQEQIWLEVVITDTGIGLTPEQQAKLFRPFTQAH 699

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             I     G GLGL I+Q ++   GG+  I S + +G      +   R+    P+
Sbjct: 700 ANIAKNFGGTGLGLSISQQLVQLLGGEITIHSVVEQGSTFTFTVCTERIKIEEPK 754


>gi|298245460|ref|ZP_06969266.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552941|gb|EFH86806.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 408

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 168/398 (42%), Gaps = 19/398 (4%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYK 141
            ++  ++          + +WR      L+  + +GL  W    L         Y     
Sbjct: 22  RMTFEQRAELRRNFTASLPLWRHPLIGYLLSILLVGLFGWGQQALDGWIGGGGIYFAGSL 81

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFF 200
               ++ ++    +   L   +  + +     +     +S    +  L  +    +    
Sbjct: 82  LLLPVLFIATFWGTMPSLFTVLLGALYIDYFFIGYNQGISWQHWEDGLRILPFFISGITI 141

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             IT    ++  + L  + E  +  AELEV+        ++ E+ N  K RFL+  SHEL
Sbjct: 142 AIITAQRERARWQTLIAEQELKEYAAELEVSN-------QKLEDANQTKDRFLSIASHEL 194

Query: 261 RTPLNAILGFSEVIELET---MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           +TP+  I G +++         G +N       +  I+     L  LI E+LD+S +  G
Sbjct: 195 KTPITTIRGQAQLALRRLAKQDGEMNVSDMHTALERINEQTVRLTTLIEELLDVSSLRTG 254

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  L++  +++ ++ ++ +   +L        I  K+ P    V  D   + QV++NL+ 
Sbjct: 255 KTALNKRKLNINELCQQVVDDQKLL---TGRHIELKLPPKEVMVSVDRDRIEQVLINLVG 311

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVK++  G  V + V     R   I ++D+G GIA  ++  V  +F +   A  S ++G
Sbjct: 312 NAVKYSPEGSVVQICVERKW-RKALIHVRDHGKGIAPDQLEKVFDTFYRTPDAEASTKKG 370

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +GLGL I++ I+  H G+    S+L +G E    LP  
Sbjct: 371 LGLGLSISKEIIERHEGRIWCESQLGQGSEFFVELPLK 408


>gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1751

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 15/257 (5%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELE----TMGPLNNETYK---------EY 290
            E +  K+ FLA++SHELRTPL ++LGF+ +I+ +        ++++  +         + 
Sbjct: 1496 EVDRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQN 1555

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            I  I    + L  LIN++LD++++EAGR E +  + S+++I+            +K I++
Sbjct: 1556 IKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTSVVEILETASAATYPLFDKKKIDL 1615

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +    +L ++W D+  M QV++NLLSNAVKFT  G                ISI D G 
Sbjct: 1616 IKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGSVTC--CAKLEDDQLVISITDTGI 1673

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GIAE E   +   F QG   +     G GLGLPI + I+  HGG+  + S   +G     
Sbjct: 1674 GIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTFFF 1733

Query: 471  ILPNTRVLNFIPEDNHE 487
             LP +   +   E ++E
Sbjct: 1734 SLPLSGQEHEPLEKSNE 1750


>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 14]
          Length = 927

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 666 TVALPLREA 674


>gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 927

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 150/336 (44%), Gaps = 4/336 (1%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L+ +         A+      V  A +  A          L   +             + 
Sbjct: 585 LAYARRRGVGSLEALPADADLVHFAETQLAGAIGGASARVLVASVVQEEPLGLDEVMDIL 644

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
               ++ +   E +     LE A +       + +E +  K  F++S++HELRTPL +I 
Sbjct: 645 DEASQVRAYSRELEQKSRALETASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIR 704

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            FSE++  +   P+       ++  I +  + L  LI+++LD+++IE+G  E   + + +
Sbjct: 705 AFSEILRDDPKAPI--AERVRFLAIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDV 762

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            + +++ +       ++  +E+   + P+   V AD   + QVI+NLLSNAVKF   GGR
Sbjct: 763 REAIQDSVEATSQLFRDSGVELAVALQPA-PRVRADRDRLVQVIMNLLSNAVKFCPRGGR 821

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V +         + ++D+GPGI+  +   +   F Q S  +    +G GLGLPI++ I
Sbjct: 822 VEVRLAPAPEG-VRVDVQDDGPGISPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRI 880

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           + + GG+  + S+L  G     +LP         E 
Sbjct: 881 VEHFGGRLWVESELGRGATFSFVLPLDAAAQAAEEP 916


>gi|77359088|ref|YP_338663.1| hypothetical protein PSHAa0111 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873999|emb|CAI85220.1| putative membrane bound sensor or esterase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 942

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 14/297 (4%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              L I L  +    L     I     +SN         K  L  ++E          + 
Sbjct: 419 RSQLTILLGIVAILILITVIAIYRRRIESNA--------KLQLTEQVEQRTLELQSVAQE 470

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             E N  KS+FLA++SHE+RTPL AIL  ++ +      P   E  ++ +  I R  +HL
Sbjct: 471 LREANDVKSQFLANISHEIRTPLTAILSQTDDLINGLYDP---EQLQDELKVIQRQSEHL 527

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSS 360
            +LIN++LDLS+IEA R ELS S   ++ ++ +   M  ++A+ KN+ +           
Sbjct: 528 KSLINDVLDLSKIEANRLELSISCFDIVQVLNDIHGMFSVQAKAKNLSLVFDNQLGDELY 587

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   ++Q+++NL +NA+KFT   G+V + V   + +G  +++KD G G+   ++  +
Sbjct: 588 TRLDLTRVKQILINLCANAIKFTHS-GQVTI-VANNTEQGLVLTVKDTGIGMNTAQLKLI 645

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              F Q   +I     G GLGL ++Q + A  GG   ++S+ ++G +    +P   V
Sbjct: 646 FECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSQFSFFVPCVPV 702


>gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 13/308 (4%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             ++++L    +  + +  ++L   +   +   T     + +    +   +   D++   
Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKAMAQGRFDVRVSKRYDDEIGEL 227

Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +    ++ E   ++       K+ F+AS+SHELRTPL +I+G+   I    +   + E 
Sbjct: 228 GDTLNYMAQEVANQQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            KE +  I R  + L  L++E+LD S+ +AG   L +S ++L ++++     ++ RA+ K
Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +   +D  L  + ADE  ++QV +N++ N+ KFT  GG + + +G  +  G  I I+
Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E ++P V   F +GS  +     G GLGL I   I+  H G+  I S + +G 
Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455

Query: 467 EVIAILPN 474
            V  ILP 
Sbjct: 456 RVDVILPV 463


>gi|158333298|ref|YP_001514470.1| two-component hybrid histidine kinase sensor and regulator
            [Acaryochloris marina MBIC11017]
 gi|158303539|gb|ABW25156.1| two-component hybrid histidine kinase sensor and regulator
            [Acaryochloris marina MBIC11017]
          Length = 1575

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 34/325 (10%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             F  + +A     +      ++ L   LA  +         L +   +      +  +L+
Sbjct: 1026 GFLQLPIAEQNDMLRRWTADEVELIEALANQVGIALAHAKLLEQEKQQSHKLSEQNHELL 1085

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                         ++ AE  N AKS FLA+MSHELRTPLN ILG++++++        + 
Sbjct: 1086 V-----------AKREAEFANQAKSEFLANMSHELRTPLNGILGYAQILQR---SASLSP 1131

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               + I  +H+ GQHLL LI ++LDLS+IEA R EL   +    + +     +  ++AQ+
Sbjct: 1132 KDHKGIQVMHQCGQHLLTLIEDLLDLSKIEAQRMELHPDSFHFHEFLTGISELCTIKAQQ 1191

Query: 346  KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------ 398
            K +E+  +   +L   ++ADE+ +RQ++LN+L NAVKFT   G V   V           
Sbjct: 1192 KGLELITQFASNLPQGIYADEQRLRQILLNILGNAVKFTDS-GNVTFKVAIAPDPLPPIS 1250

Query: 399  -----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                       +     + D G GI   E+  +   F Q         QG GLGL I+ +
Sbjct: 1251 QKDDLPHGETIQSIVFQVSDTGIGIVAQELSKIFLPFEQAGHPD-RYHQGTGLGLAISHN 1309

Query: 448  IMANHGGQFLIRSKLREGVEVIAIL 472
            + A  GG+  + S+  EG      L
Sbjct: 1310 LTAMMGGKLSVISQPNEGSVFSFTL 1334


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 150/356 (42%), Gaps = 8/356 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
              T          ++    +    +  +  ++   +           + +A    A+++
Sbjct: 29  ATATSFSVPAAFERHMAGMSAMMPGMMGNSHSMEMELFANYRASVTEALSLA-VITALIA 87

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             V    ++  +   +     +++ + +   K     +     + EL+      ++   +
Sbjct: 88  AVVASYFISRQVVNPIRTMMNLSHRIAEGEYKERLTISGDLSQLDELDQLALSFNQMADK 147

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    + + +  ++HELRTPL AI G+ E +    +    N   +     IH     L
Sbjct: 148 LEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQ-----IHDEINRL 202

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++ +LSR+E+G + L    +SL D++     +   +   K I+   +I+P+L  V
Sbjct: 203 QRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEPNLPPV 262

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D+  + QV+ NL+ NA+++T  GG+V V +         IS+ D G GI+   +P + 
Sbjct: 263 LIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQR-TEILISVSDTGIGISPEHLPFIF 321

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476
             F +   +   A  G G+GL IAQ+++  H G+    S    +G      LP  +
Sbjct: 322 NRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEGKGSTFYFTLPIPK 377


>gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 538

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E   RAE  N  KS+FLA+MSHELRTP N +LG   ++E   +         
Sbjct: 112 EDLTHELREAHFRAEAANRGKSQFLANMSHELRTPFNGMLGMMSLLESTPLTT----AQT 167

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +YI     S  HLL L+N+ILD+S +E+G+  L+   + L  ++ E   ++   A EK +
Sbjct: 168 DYIKTAKGSANHLLTLLNDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQL 227

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYIS 404
           +    +   L   V AD   ++Q++ NL++NA+KFT  GG    +          G    
Sbjct: 228 KFSIVVQAELPAWVLADATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFL 287

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G G+ +  +  +   F Q    +     G GLGL I+Q++    GG   + S L +
Sbjct: 288 VEDTGIGMDDHVLSRLFQRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVESTLGK 347

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 348 GSVFTLHLP 356


>gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 815

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/232 (43%), Positives = 143/232 (61%), Gaps = 1/232 (0%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AK+ FLA+MSHELRTPLNAI+GFSE+IE E +GP+  + Y++Y  DI+ SG+HLL L
Sbjct: 575 SNRAKTEFLATMSHELRTPLNAIIGFSEIIENELLGPVETKQYRDYAHDINESGRHLLTL 634

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+ILD++R+E GR+ L ES + +   +R  + ++  RA+   + I ++I   L  +  D
Sbjct: 635 INDILDVARLEVGRFALMESEMDVGQTIRASVQLVGERAKAAGLRIGEQIPDGLPWLMGD 694

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E+ ++Q I N+LSNAVKFT+  GRV VT   T   G  I + D G GI   ++  ++  F
Sbjct: 695 ERRIKQTIANILSNAVKFTSADGRVTVTAK-TDENGLDIVVSDTGIGIHADDMTKIMAPF 753

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GQ   ++     G GLGLP+A+  M  HGG   I S   +G  V    P +R
Sbjct: 754 GQAESSLSRRFDGAGLGLPLARRFMDMHGGTLSISSTPGQGTVVNLHFPASR 805


>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
 gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
          Length = 1014

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 598

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TPL +I GF E ++   +         +++  I    +
Sbjct: 370 RKLE---QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVAV--KFLDIIDIEAE 424

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+ L LS IEA R + S   I LI I+ E +++L+  A +KNI +    + +  
Sbjct: 425 RLYMLINDTLQLSEIEAMRKDDSVMKIDLIQIIDEVVLILKSSADKKNIALEVLANSAEV 484

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V A+   ++Q+++NL+ NA+K+    G++++     +     IS+KD G GI E     
Sbjct: 485 PVIANRNRIKQMLINLIDNAIKYNVENGKIYIK-SEKANGNTVISVKDTGIGIPEKHHSR 543

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +          G GLGL I + I+  + G   I S+  +G E I  LP 
Sbjct: 544 IFERFYRVDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLPL 598


>gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1549

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 38/387 (9%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH- 183
             L E        + +     LL  + ++  S+F      FL+     + ++   I     
Sbjct: 962  GLGESSPAHVVVMPVLFEGRLLGVIELATFSSFTTVALDFLNQIADQIGVTVNTISVNTK 1021

Query: 184  -----VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                 +    L   L+   +        L ++N ++     +      ++E+  S  ++ 
Sbjct: 1022 TEGLLLESQRLTAELSMRSAELEARQEELERTNEELQEKAEQLAQQNRDIEIKNSEIEDA 1081

Query: 239  RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            R+  EE        +  KS FLA+MSHELRTPLN++L  ++++     G L+     E+ 
Sbjct: 1082 RQILEERAEQLSQASRYKSEFLANMSHELRTPLNSLLILAKLLSDNNEGNLS-AKQVEFA 1140

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              IH +G  LL LIN+ILDLS++EAG+ ++  + I+L+ +V       +  A +KN++  
Sbjct: 1141 ETIHGAGSDLLQLINDILDLSKVEAGKMDVRPARIALVQLVDYVEAAFRPLAADKNLDFA 1200

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--------- 401
             ++ P L  ++  DE+ ++QV+ NLLSNAVKFT   G V + +   +G            
Sbjct: 1201 VRVSPELPPTLHTDEQRLQQVLRNLLSNAVKFT-DNGAVELMIRPVAGPEIPQHVREQLL 1259

Query: 402  -------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                           S+ D G GI   ++  +  +F Q          G GLGL I++ I
Sbjct: 1260 ESGTMADPDEPLIAFSVADTGIGIPGDKLREIFEAFKQADGGTSRKYGGTGLGLSISREI 1319

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNT 475
                GG+  + S++  G      LP  
Sbjct: 1320 ARLLGGEIHVESQIGSGSAFTLYLPLR 1346


>gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
 gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
          Length = 1576

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    +  + AE+   AKS FLA+ SHE+RTPLNAILG + ++  E++     E+    +
Sbjct: 815  EQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 870

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I  SG+ LL ++N++LDLS+IEA    L    + L + + E   +   +A+ KN++  
Sbjct: 871  DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFK 930

Query: 352  QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402
             ++   L   V AD   +RQ++ NLLSNA+KFT++ G + +                   
Sbjct: 931  LEMGADLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALHAEVIDKFIWKGAEKNIVR 989

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             SI D G GI+E     +   F Q   +      G GLGL I   ++    G+  + S  
Sbjct: 990  FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1049

Query: 463  REGVEVIAILPNTRVLNF 480
             +G      +P   + + 
Sbjct: 1050 GQGSTFWTEMPLQTLSDE 1067


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +S F+A++SHELRTP+  + G+SE +  +     + E   E    I+   + +  
Sbjct: 332 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDQEERNEITKIIYDESKRMGR 390

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362
           L+ ++LDL+R+E+G   L +  + +              A+EK++ +    +    + + 
Sbjct: 391 LVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFDSEFNDDAMIN 450

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ NL+ NA++ T   G V V V         IS++D G GI + ++P V  
Sbjct: 451 IDEDRIEQVLTNLVDNALRHTDE-GSVTVKVEKEP-TFAKISVQDTGHGIPQDDLPYVFE 508

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   ++ G GLGL IA++I+  H G  ++ S L+EG      LP
Sbjct: 509 RFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559


>gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 300

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    E  +        + +E +  K+ F+A+MSHE+RTPLNAI+GF+ ++   T    N
Sbjct: 40  LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 93

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+++   LL LIN+ILDLS+IE+GR   + S + L DI +E  ++  L+ 
Sbjct: 94  ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 153

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 ++  +      +W D   + QV+LNLLSNA+KFT+  G + +           +
Sbjct: 154 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 211

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E ++ +V   F +         QG GLGLPI + I+   GG+  +RS+L 
Sbjct: 212 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 267

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +G      LP       + E +  S   +C
Sbjct: 268 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 297


>gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 590

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP+  + G+SE I  +     + E  KE    I+     +  
Sbjct: 360 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AESEEEKKEIAKIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP---SLSS 360
           L+N++LDL+R+EAG   L +    +   +       Q  A+EKNI +         +   
Sbjct: 418 LVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGHKTGLNSQQ 477

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ D   + QV+ NL+ NA++ T   G V V    T      + + D+G GI E ++P V
Sbjct: 478 IYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSG-ILVEVSDSGSGIPEEDLPFV 536

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A    + G GLGL IA++I+ +H GQ  + SK+ +G      LP
Sbjct: 537 FERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589


>gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
 gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
          Length = 505

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 215 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 274

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N   KEY   +  +   LL L
Sbjct: 275 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 331

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 332 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 390

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 391 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 450

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 451 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 499


>gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
 gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
          Length = 2379

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%)

Query: 226  AELEVAKSLSDETRKRA-----------------EEENLAKSRFLASMSHELRTPLNAIL 268
            A LE+ K    + R+                   EE   AKS FLA++SHELRTPLN ++
Sbjct: 1850 AMLEMQKRALAQAREAEVKAKEAEAKAVANMKLKEEAARAKSLFLANVSHELRTPLNGVI 1909

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G SE+++   +    N     Y   I      LL++IN++LD S++EAG+  + E  ISL
Sbjct: 1910 GMSELLKASPL----NGEQTGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISL 1965

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
             + + E +  L     E+ ++  ++++ +    V AD   + Q+++NLLSN+ KFT   G
Sbjct: 1966 NETIAEVVRALAYTNAERGLKTIEQLELNPEMLVMADPVRLHQILMNLLSNSYKFTPR-G 2024

Query: 388  RVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             V V          ++    S+ D G GI + +   +   F Q   +   +  G GLGL 
Sbjct: 2025 SVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQKQKLFLPFSQIESSSTRSYGGTGLGLS 2084

Query: 444  IAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            I ++++ N   G   + S+  +G  V   L   +V         + T
Sbjct: 2085 ICKALIENVMHGTVRLESQPGQGTTVTFSLRFKKVPKAQAGAQQQRT 2131


>gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
          Length = 660

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N   KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654


>gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 797

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 141/360 (39%), Gaps = 21/360 (5%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           + P      +  ++  A  L+A   + L    L  +V      +   +  Q         
Sbjct: 149 LRPMWTDTWHRLLWVLAGTLVAFGGALLLATRLQRSVSEPIIELTSVMR-QVAQDSDYSR 207

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
                               L +   +    +  +  L  ++    +     +++AE  N
Sbjct: 208 RLRIDRRDEVGELVRGFNSMLHEVAARDEQLREHRATLEDQVTSRTAQLQLAKEQAETAN 267

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           LAKSRFLA+MSHE+RTP+N ++G ++++    +    +E  + +   +  S + LL+L+N
Sbjct: 268 LAKSRFLANMSHEIRTPMNGVIGMADLLLDTGL----SEQQRRHAETLRLSAESLLHLLN 323

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
            ILDLS+IE+GR ++  +      +V E +      A  K + +   I P +   V  D 
Sbjct: 324 NILDLSKIESGRLDIELTPFDPRRLVEEVMQPFVEMASAKGVLLGDVISPDIPPVVIGDP 383

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------------GQYISIKDNGPG 411
             ++Q++ NLLSNAVKFT   G + +++                        ++ D G G
Sbjct: 384 YRVKQILSNLLSNAVKFT-EHGSIFISLSQEPTGADRDSAPAADGTHCQLCYAVTDTGVG 442

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+      +   F Q   +      G GLGL I + +     G     S    G      
Sbjct: 443 ISRAASEKLFAPFTQADDSTTRKFGGTGLGLVIIRELAQRMDGHVGFESAEGLGSTFWFR 502


>gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 503

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 188/458 (41%), Gaps = 12/458 (2%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76
                 L      +    RE+  L    L   + ++   + L A             M  
Sbjct: 7   RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVALPAGVAMVC 66

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT--WTP 134
              L     +++L ++   + I                  +     L+  ++P     T 
Sbjct: 67  AAFLFSAVGSIALARQGSAAGIATQSAE---------DFFLAATPGLVFFLDPHGSVATI 117

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
                      +           +      L    +      +   S+ +     +    
Sbjct: 118 GGRDRRDFLGWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRD 177

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                +  +     +     L+    +   ++  +  +  +      AE  N AKSRFLA
Sbjct: 178 QRQFAYLRMDMTARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLA 237

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHELRTPLNAILGFS+++  E  G   N+  +EY+G +  SG HLL+++N +LD+S+I
Sbjct: 238 AVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKI 297

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAGRYEL   A  +   V+ C  ML L+A+ K + +  +I   L  V AD++ ++Q+++N
Sbjct: 298 EAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRDLGEVVADQRAIQQILIN 357

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+KFT  GG V V           +++ D G GI   ++  +   F Q        
Sbjct: 358 LVGNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRR 416

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 417 FEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEI 454


>gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
 gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
          Length = 660

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N   KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ + +     L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654


>gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
 gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
          Length = 494

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+      R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 249 IQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSE---EMDG 305

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I+++ + LL LI++I+D+S+IE+   E      SL  I+ E     Q    
Sbjct: 306 EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQ-CQSLNI 364

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              IE   ++    + +  D    +QVI NL++NA+KFT   G + +           I 
Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMY-GHITLGSKILQNGTIDIY 423

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G G+ + ++  +   F +      S + G GLGL I ++I+ +  G+  + S   +
Sbjct: 424 VKDTGMGMPQEKLAHIFERFYKMD----SFKPGAGLGLSICKTIIEHMQGEINVTSIEGK 479

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 480 GSNFTITIP 488


>gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1965

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
            G L   LSF +        + V +L   +E+  +  E     +  ++  +     N  K 
Sbjct: 1534 GQLLGTLSFASLTRTQFTPAEVNLLQAISEQVAIALERAELVASLEQQTEDLARANRVKD 1593

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA +SHELR+PLN ILG++++++ ++  P   +   + +  I R+ +    LI ++LD
Sbjct: 1594 EFLAVLSHELRSPLNPILGWTKLLQSQSFSP---DKAAKALATIERNAKLQAQLIEDLLD 1650

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            +SRI  G+  L+ ++++L  ++   +  ++L A+ K I++   ++P +  +  D   ++Q
Sbjct: 1651 VSRILQGKMVLNVTSVNLGSVIEAALETVRLAAEAKAIQLETLMEPEIDPILGDPARLQQ 1710

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            ++ NLL+NAVKFT  GG+V V +         + ++D G GI+   +P V   F Q    
Sbjct: 1711 IVWNLLTNAVKFTPQGGQVTVRLQRV-DTFAQLQVQDTGKGISPAFLPHVFDYFRQEDGT 1769

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
                  G+GLGL I + +   HGG     S     G      LP  
Sbjct: 1770 TTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIRLPLQ 1815


>gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 866

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 8/233 (3%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA MSHE+RTP+N I+  + ++    +        ++++  +  SG  L+ ++N
Sbjct: 368 RTKSEFLAMMSHEIRTPMNGIIVMARLLLDTDLTA----EQRDWLEIVTSSGDTLMTVLN 423

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD S++E+G+ ++ E    L  ++   + +++ RA+EK + I       +   + AD 
Sbjct: 424 DILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGLSISVHYGAGVPGVIRADP 483

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             +RQV+LNL+ NA+KFT +GG  + + V    G       +++D G GI    +  +  
Sbjct: 484 TRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFAVRDTGIGIPAEALTRLFA 543

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +F Q   +I     G GLGL I Q ++   GG   + S    G      LP +
Sbjct: 544 AFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGYGTTFTFTLPVS 596


>gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 820

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 13/306 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL-- 234
               +     IS +G     LS      +   +  ++ L   A +   + E   A +   
Sbjct: 379 GFFSAQSTPLISRSGQFIGLLSTHWRKYHRPSERELRFLDLLARQATDLIEQRQAFAEHQ 438

Query: 235 -----SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                    RK AE+ N  K  FLA +SHELR+PLN ILG+S +++ +     ++ T ++
Sbjct: 439 HLLEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKF---DSATTQK 495

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I R+ +    LI+++LD++RI  G+ +L E+ ++L+ ++ E I +++  A+ K+I 
Sbjct: 496 GLSTIERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIA 555

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +   +  S   V  DE  + QV+ NLLSNAVKFT  GG+V V +     +   I++ D G
Sbjct: 556 LRFNLIDS-CQVRGDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQ-ACITVVDTG 613

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            GI    +P +  +F Q  I+I     G+GLGL I + ++  HGG     S    +G   
Sbjct: 614 KGIKPEFLPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEGQGATF 673

Query: 469 IAILPN 474
               P 
Sbjct: 674 TVQFPL 679


>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
 gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
          Length = 1014

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 565

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + EL  + ++L ++    I  LQ +A  K I+I  +I+  +  +
Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ +++   +V V V   +    Y+ I+D G GI+E +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  ++S+  +G     + 
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562


>gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1]
 gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1]
          Length = 761

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 6/251 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + R  A++ + AK  FL++MSHE+RTPLNAILGF  ++  E +    ++ ++ Y+ 
Sbjct: 141 QKLIDARLEADKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDEDV----SKKHRTYLD 196

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SG++LL++IN+ILD S++ +G + +     SL D +   + +    A  K+I I  
Sbjct: 197 IILNSGENLLSIINDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDITITS 256

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            IDP +   ++AD   ++Q++ N LSNA+KFT  GG + V           +S+ D+G G
Sbjct: 257 FIDPHIPKELYADALRIKQILSNFLSNAIKFTPNGGHISVEAAC-HHGILKLSVTDSGIG 315

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IAE +I  + T+F Q   + +    G GLGL I   +  +  G    +S +  G E    
Sbjct: 316 IAEEDIENIFTAFAQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKSIVGNGSEFWVE 375

Query: 472 LPNTRVLNFIP 482
           +P        P
Sbjct: 376 MPVDAHSELCP 386


>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 524

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L + + +++   A+    I   +  ++   +  ++AE  N AKS FLA+MSHELR+PL 
Sbjct: 124 RLQRLSQQLVEQNAQLIQEIQIRQQTEAALHQAVEQAEAANRAKSVFLANMSHELRSPLT 183

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ILG++++++            ++ +G I++ G HLL LIN+ILDLS+IEA + E+    
Sbjct: 184 GILGYAQLLQK---ATDCTPLQQKGLGVIYQCGSHLLTLINDILDLSKIEAQKLEIFPDY 240

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
           I     +     + + +AQEK ++       SL   ++ DEK +RQV++NLLSNA+KFT 
Sbjct: 241 IDFCLFLNHLAELFKFKAQEKKLKFAYFPLTSLPPEIYVDEKRLRQVLINLLSNAIKFTH 300

Query: 385 IGGRVHVTVGWTSGR----------------------GQYISIKDNGPGIAEGEIPTVLT 422
             G V + V   S                             I+D G GI   +   +  
Sbjct: 301 Q-GSVTLKVSVRSYSCELNDHKVTSSRQTDKVQKTLANIRFEIEDTGIGITPEKREKIFL 359

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +   + +G GLGL I++ I+   G +  + S    G +    L    VL  +P
Sbjct: 360 PFEQVMES-SHSPEGTGLGLTISKKILVLMGSKIFLESCPNRGSKFWFDL---DVLTNLP 415


>gi|144898721|emb|CAM75585.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 752

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 143/316 (45%), Gaps = 19/316 (6%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL----FKSNVKILSCQAEKDDLIAEL 228
           A   QA   +  L +S+A     A+   ++I + L     +   ++     E   L+ E 
Sbjct: 175 AAIAQARHGLSQLSVSMACFFFFAIVCLSFIVWQLDLARRRQEEQLAERNVELAHLLDEN 234

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  ++       +   AKS FLA+MSHE+RTP+N I+G +E++    + P       
Sbjct: 235 AQAREAAE-------QATKAKSEFLATMSHEIRTPMNGIVGMTELLIDTGLTP----ERL 283

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           ++   I  S + LL ++N+ILD S++EAG          L   V + I ++  R + +N+
Sbjct: 284 KFAQTIRTSAESLLTILNDILDFSKLEAGHLHFESVEFDLSLQVEDAIDIVAPRLRGRNV 343

Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           ++   I+PSL      D   +RQVILNLL NA KFT   G V + V    G     ++ D
Sbjct: 344 DLVYWIEPSLRGRYLGDPVRLRQVILNLLGNAAKFT-EFGVVSIHVASGQGGRLRFAVTD 402

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI +    ++   F Q   +      G GLGL I + I+   GG     S+  +G  
Sbjct: 403 TGIGIPQAAQASLFGMFAQADSSTARRFGGTGLGLAICRRIVEGMGGDIGFFSEEGKGST 462

Query: 468 VIAI--LPNTRVLNFI 481
                 LP  + +   
Sbjct: 463 FWFEVMLPLIQPVPAQ 478


>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
          Length = 1032

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 482

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 651

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 652 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 771 TVALPLREA 779


>gi|194367478|ref|YP_002030088.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194350282|gb|ACF53405.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 738

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 20/313 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---- 240
                  +   A +    +   L   N  + S Q E+  L +E +  +  ++   +    
Sbjct: 2   PLWGALLVALAAAAIVLLMGLRLRTRNRALASLQRERSVLASERDQLRRTTERQGQLEQQ 61

Query: 241 ------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                  AE   LAK  FLA+MSHE+RTPLN IL   E+I    +G    E  ++ +   
Sbjct: 62  LLQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLATA 117

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S Q LL ++++ILD SR+EA   EL  ++ +L +++   + ++Q  A  K + +  ++
Sbjct: 118 SASSQQLLRIVDDILDYSRLEAQALELEITSFNLRELLDGVVQLMQRAADSKGLVLGLQL 177

Query: 355 DPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409
           DPS+   V  D   +RQV+ NLL+NA+KFTA  G+V + V               I D G
Sbjct: 178 DPSVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVQLRVQRLGEGAAQHQLRFEITDTG 236

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +     +  SF Q   +      G GLGL I + I+    G+  ++S   +G    
Sbjct: 237 IGIDQALQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGATFW 296

Query: 470 AILPNTRVLNFIP 482
             +P  +V   +P
Sbjct: 297 FEIPLLKVPGDLP 309


>gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1171

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 5/381 (1%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  L+V     G    ++ L       P  L   +  +  I +++ +  +      +   
Sbjct: 342 RHLLVVPARVDGGVNAVVELGFIHAVHPSDLEFLQRVSESIGIAVRSSHDRTRLEQLLEE 401

Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                  L  Q   +   +      + +L  +          L ++NV++          
Sbjct: 402 TQRQTEELQAQQEELRVSNEEIEEQSRVLKESQVRMEAQQAELEQTNVQLEEQTQLLAKQ 461

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             +L  A+    +     E  +  KS FLA+MSHELRTPLN+ L  ++++     G L +
Sbjct: 462 KDDLTNAQGTLAQKASELERTSRYKSEFLANMSHELRTPLNSSLILAKLLADNKEGNLTS 521

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +   I  +G  LL LIN+ILDLSRIEAG+ E+    + L   V   +   Q  AQ
Sbjct: 522 EQVK-FAQTISSAGNDLLALINDILDLSRIEAGKVEVQPEVVILRRTVEALLRTFQPVAQ 580

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +     +   ++  +  D +   Q++ NLLSNA KFT   G V + V          
Sbjct: 581 EKKLGFSISVQEDVAEKLETDPQRFGQILRNLLSNAFKFTEK-GEVSLRVFPVGPGKVGF 639

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D G GIA  +   +  +F Q   +      G GLGL I++ +    GG+  ++S+  
Sbjct: 640 AVRDTGIGIAPHQQELIFEAFRQADGSTHRKYGGSGLGLSISRDLARLLGGEVTVQSQPG 699

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           EG      LP        P +
Sbjct: 700 EGSTFTLTLPVVFARAGSPAE 720


>gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 919

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/409 (21%), Positives = 168/409 (41%), Gaps = 7/409 (1%)

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW-TLLTLVE 128
                WSL+    +   +SL  +    + +    +V               W     + +
Sbjct: 508 SHSLFWSLLVNIGFYLGVSLRGQPSVVETRQATAFVDVFRHTASAADGSRLWRGSAQVQD 567

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                  +L   ++    +  +     + +               L   A+         
Sbjct: 568 LLPLIGRFLGPVRAQEAFLTYARGRGLSSVAELKADADLVHYAETLLAGAL--GGASARV 625

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +   +            ++     ++ +   E +    ELE A +       R +E +  
Sbjct: 626 MVASVVQEEPLGIDEVMNILDEASQVRAYSRELELKSQELEAATAKLRAANDRLKELDRM 685

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  F+++++HELRTPL +I   SE++       L     ++++G I +  + L  LIN++
Sbjct: 686 KDDFMSTVTHELRTPLTSIRALSEILLETPQASL--AERQKFLGIIVKEAERLTRLINQV 743

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+++IE+G  E   S + L +++ E +        ++++ + Q +      + AD   +
Sbjct: 744 LDMAKIESGNAEWHTSELDLREVIEESVAATYATFNDRHVTLTQDLASHTPRIRADRDRL 803

Query: 369 RQVILNLLSNAVKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            QV+LNLLSNAVKF     G+VHV++    G    + ++DNG GI+      +   F Q 
Sbjct: 804 IQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGG-LRVDVRDNGSGISAANQKIIFERFRQV 862

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              + +  QG GLGLPI++ I+   GG+  ++S+   G      LP ++
Sbjct: 863 GDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNGATFSFTLPFSQ 911


>gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1186

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 7/286 (2%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             +   + ++++    A +  L  +      L+   R +AE  N  K  FLA +SHELR+P
Sbjct: 771  GHKYDQGSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEFLAVLSHELRSP 830

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LN ILG+S ++  + + P   E     +  I R+ +    LI ++LD+SRI  G+  L+ 
Sbjct: 831  LNPILGWSRILRSKQLSPTKVEQ---ALETIERNAKLQAQLIEDLLDVSRILQGKMTLNV 887

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            ++++L   +   +  +QL A+ KNI I   + P  ++V  D+  ++QV+ NLLSNAVKFT
Sbjct: 888  ASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQQVVWNLLSNAVKFT 947

Query: 384  AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GG++ V +   +     I +KD+G GIA   +P V   F Q   A      G+GLGL 
Sbjct: 948  PSGGQIEVQLEQVNL-YAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRQFGGLGLGLA 1006

Query: 444  IAQSIMANHGGQFLIRSKLRE--GVEVIAILPNTRVLNFIPEDNHE 487
            I +     HGG   + S L +  G      LP   V   +P D+ +
Sbjct: 1007 IVRHFTELHGGTVQVSS-LGQDLGATFTVRLPLNLVEQELPADDEQ 1051


>gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
          Length = 740

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 10/235 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +    + ++ A+  + AK  FLA+MSHE+RTP+NAILG + +     +     
Sbjct: 506 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 562

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T ++Y+  I+ S ++LL +IN+ILD S++EAG+  +     +L D++     ++ L+AQ
Sbjct: 563 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 621

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           EK IE    IDP +   +  D   + QV++NL  NAVKFT+  G + ++   +    Q  
Sbjct: 622 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 680

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               ++KD G GIA+ ++  +  +F Q   +I     G GLGL I++ ++   GG
Sbjct: 681 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGG 735


>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 1153

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 21/253 (8%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS FLA+MSHE+RTPLNA++G + ++    +    +E  ++Y   +  +G+ LL LI
Sbjct: 475 SRLKSEFLATMSHEIRTPLNAVIGLTSLMMDTPL----SEGQRQYAQGVKGAGEVLLTLI 530

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILD S++EAG+ +L  +A    ++V E   ++   AQ K++E+     P +   +  D
Sbjct: 531 NDILDFSKLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGD 590

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAE 414
              +RQ++LNL SNAVKFT   G V V V   +                 ++D G GI+ 
Sbjct: 591 AGRIRQILLNLSSNAVKFTPD-GEVEVQVSVLAHDPNLAHDPNKASLRFEVRDTGIGISA 649

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-- 472
                +  SF Q   +      G GLGL I++ +    GG+  + S+   G      L  
Sbjct: 650 ENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLEL 709

Query: 473 ---PNTRVLNFIP 482
              P       +P
Sbjct: 710 PLGPAATDTESLP 722


>gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
          Length = 676

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D I + ++ +      R+ AE+ N  +S FLA++SHE+RTP+  I+G  E+I    +   
Sbjct: 118 DDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL--- 174

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E   EY   ++ S + LL L+N++LD S++E+G   +  +  +L D V + + ++ + 
Sbjct: 175 -DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISME 233

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A +K +EI   I   +   ++ D   ++QV+LN + NAVKFT   G V V+V        
Sbjct: 234 AHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTET-GYVSVSVKLVFENNS 292

Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D G G+   +   +  SF QG+ AI     G GLGL I+++I+ 
Sbjct: 293 DDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIIT 352

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              GQ  I+  +  G      +P        P ++
Sbjct: 353 MMKGQIGIKDNISRGSVFWFKIPLVPSKKKAPHES 387


>gi|300863849|ref|ZP_07108773.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300338152|emb|CBN53919.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 725

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 22/296 (7%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                   F   I   +F+     +  + + +    +L+ AK  +++ +  AE  N AKS
Sbjct: 191 IAFVGGSVFNLLIFTWVFRLIYDEIFKRKQTE---IQLKEAKEEAEQAKLAAEVANSAKS 247

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN ILG+++++          E   + +  I + G HLL LIN+ILD
Sbjct: 248 EFLANMSHELRTPLNGILGYAQILIR---SKNIQENELKGLEIIQQCGSHLLTLINDILD 304

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           LS+IEA + EL+ +    +  ++    +++++A++K I    + DP+L  SV ADEK +R
Sbjct: 305 LSKIEARKMELAPNEFHFLAFLQAVSEIVRIKAEQKGIAFISQFDPALPISVQADEKRLR 364

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-------------RGQYISIKDNGPGIAEGE 416
           QV++NLL NAVKFT  GG V   VG                       I+D G G++E +
Sbjct: 365 QVLINLLGNAVKFTDRGG-VTFKVGVIESSTIEPEASTLNAVNKIRFQIEDTGVGMSEEQ 423

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   F Q     K   +G GLGL I+  I+   G +  + S+L +G +    L
Sbjct: 424 RQKIFIPFEQV-GETKRMAEGTGLGLAISSKIVEVMGSKICVTSQLEQGSQFWFDL 478


>gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 862

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+    E R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 616 IQRYKTAEQEMREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTT 673

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   ++I  I+++   LL LIN+ILDLSRIE+G  E   +  +L  +++      +L   
Sbjct: 674 EEVAQFIATINKNCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMP 733

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                + +  +     +  D   ++QV+ NL++NA KFT  G                I 
Sbjct: 734 PGVELLLRMPEGDKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIF 793

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E  I  +   F +         QG GLGL I Q+I+    G   + S++ +
Sbjct: 794 VEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLKGTISVTSEVGK 849

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 850 GTRFTVRLP 858


>gi|261417770|ref|YP_003251452.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319767417|ref|YP_004132918.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261374227|gb|ACX76970.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317112283|gb|ADU94775.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 468

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           A ++  L    L   +  Y             +        +   +L  +    +   T 
Sbjct: 132 AVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAATFWPLAAIFAAALLVVGRRMVRQMTE 191

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMSHE 259
               + ++  ++   + E D  +   +    L++   + A+    E+  K  FLA++SHE
Sbjct: 192 PLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVSHE 251

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL+ + G+SE +          E  K Y+  IHR  + +  L+ ++LDL+R+E    
Sbjct: 252 LRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQSV 309

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L  + ++   ++ + I   +  A +K IE+  ++D  +  V  D   + QV+ NLL NA
Sbjct: 310 PLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-VNGDANRLEQVVRNLLDNA 368

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +++T  GG V V +   S     + I+D G GI + ++P +   F +   A    E G G
Sbjct: 369 IRYTPEGGVVTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGGTG 428

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           LGL I + I++ H G     S L  G+ V   LP  R   
Sbjct: 429 LGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPLVREEE 468


>gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 22/300 (7%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----ETRKRAEEENLAK 249
                  + +++   +  + +    +E+      L+ +    +    E  +  +  N AK
Sbjct: 134 VPVDLTLSLVSFRNERQAIIVARDISERKRNERALKRSHDQLELRVRERTRELDRANRAK 193

Query: 250 SRFLASMSHELRTPLNAILGFS---------------EVIELETMGPLNNETYKEYIGDI 294
           S FL+++SHELRTPL A+LGF+               E +    +   + E  +  +  I
Sbjct: 194 SEFLSTVSHELRTPLTAVLGFAKVTSRKLVNSIFPAVERLADPNLRK-DMEVVRRNLEII 252

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              GQ L  LIN++LDL+++EA R E   + +S    +R+ + +     ++ ++ +   +
Sbjct: 253 AGEGQRLTLLINDVLDLAKMEAHRVEYVMAPVSPEAFIRKSVEVTSALFEDTDLTLRLDL 312

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +P L  V  D   + QV++NL+SNAVKFT  G  V             + + D G GI  
Sbjct: 313 EPDLPLVNGDADRLMQVMVNLISNAVKFTPQG--VITCAAHVVDGTVRVGVTDTGVGIRP 370

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +   F Q    +     G GLGL I + I+  HGG     S+   G   +  LP 
Sbjct: 371 ELLQAIFEEFTQVGEHLSDRPAGTGLGLTICKHIVEGHGGHIWAESRPGHGSTFLFTLPV 430


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/252 (37%), Positives = 151/252 (59%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+E +  K+     +K AE+E+  KS FLA +SHE+RTPL AI+GFSEVI+ +  GPL
Sbjct: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N  Y EY   I RSG  +L+++N++LD+S+IE+G+  L    +SL + V E I ++QL 
Sbjct: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A EK I I      ++  + AD + ++Q+ LN+LSNA+ FT  GG++ ++   TS     
Sbjct: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G G+   E+   +  FGQ   + +   +G GLGLP+A++++  + G+F I S  
Sbjct: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798

Query: 463 REGVEVIAILPN 474
            +G  +  I P 
Sbjct: 799 AKGTLIEIIFPL 810


>gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1821

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1172 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1231

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1232 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1291

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1292 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1351

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1352 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1410

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1411 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1470

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA  ++ 
Sbjct: 1471 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1530

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP  R 
Sbjct: 1531 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1589


>gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1017

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 148/277 (53%), Gaps = 21/277 (7%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +      + +     ++A LE +++  ++  +RA   N AKS+FLA MSHELRTP+NAIL
Sbjct: 509 RVEELQTAAEMRNTLMLAMLEFSQAALEQAAERAAIANRAKSQFLAKMSHELRTPMNAIL 568

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GF++++      P     ++E++G I RSG+HLL LIN++L++S+IEAG+  L+ES   +
Sbjct: 569 GFTQIMSRSQNIP---PEFQEHLGIISRSGEHLLTLINDVLEMSKIEAGQLVLTESCFDI 625

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           +  +     M  L+A EK + +  + + +    V+ D+  +RQ+++NLLSNA+KFT  G 
Sbjct: 626 VRFIHSIQEMFALKASEKGLMLRIEQEINVPPYVYGDQAKLRQILINLLSNAIKFTINGS 685

Query: 388 -RVHVTVGWTSGRGQ--------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             + + V                      Y+ ++D G GIA  ++ +V  +F Q      
Sbjct: 686 ITLRIKVIPEIDDAIDSSKVEALGSAIALYLEVEDTGCGIALCDLESVFEAFMQTE--RG 743

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
              QG GLGL I++      GG   ++S L +G    
Sbjct: 744 RHAQGTGLGLSISRQFARLMGGDITVQSSLNQGSIFT 780


>gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 745

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 125/283 (44%), Gaps = 5/283 (1%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                 +      L + +    +        + +   ++      R  A   N AKS+FL
Sbjct: 183 TAFGPRWIAWRETLVRPHANEPAEFQCVGRDVTDRTESEHALGLARDHAVSANRAKSKFL 242

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A  SHE+RTPLN ILG S ++    +    N     Y   +  SG+ L++L+ E+LD S+
Sbjct: 243 AVASHEIRTPLNGILGMSTLLLDTPL----NPEQAAYAKAVKTSGEALMSLVEELLDFSK 298

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           IEAG+  L      L  ++ E   +L  RAQ + IEI   ID  L   V  D   +RQV+
Sbjct: 299 IEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERLPLEVAGDAARLRQVL 358

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNL SNAVKFT+ GG   +             ++D G GIA      +   F Q    I 
Sbjct: 359 LNLASNAVKFTSRGGVALIVEPGIWPNEISFMVRDTGIGIAPDAQQRIFREFEQADEHIA 418

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               G GLGL I++ I+   GG+  + S   EG      +P  
Sbjct: 419 RQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIPLQ 461


>gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 440

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 15/316 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                V   +            ++  +    +     +   L +  +K +   A   +  
Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190

Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           + ++      +        R + E       ++  F A++SHEL+TPL AI G++E+IE 
Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +  E    +  +I R+ Q LL+LIN+I+ LS +++   +     + L  +V++C+
Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCM 307

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             LQ+ A+++ + +       +  V  + + + +++ NL  NA+++   GG V+VTV   
Sbjct: 308 ENLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G    ++++DNG GI + +   V   F +   +      G GLGL I + I+  H    
Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGL 424

Query: 457 LIRSKLREGVEVIAIL 472
            + S++  G  +    
Sbjct: 425 TLDSEVGRGTTIKVEF 440


>gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 627

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + +F++++SHELRTPL ++  + E +        + +   E++         ++ +I
Sbjct: 380 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 437

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355
           N++L LSR+++G  +L    +++  +V   +    +  ++  I           I +   
Sbjct: 438 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFT 497

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NA+K++  GG +   +  T      +SI D G GI + 
Sbjct: 498 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 556

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  V   F +   A   A+ G GLGL I++ ++  H G+  + S   +G      LP  
Sbjct: 557 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 616

Query: 476 RVLNF 480
                
Sbjct: 617 EYSEE 621


>gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1840

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1191 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1250

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1251 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1310

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1311 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1370

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1371 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1429

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1430 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1489

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA  ++ 
Sbjct: 1490 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1549

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP  R 
Sbjct: 1550 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1608


>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1364

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E ++ +         A+  N +KS FLA+MSHE+RTP+NAILG   +++   +     
Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAA- 678

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I RS + LL +IN+ILD S+IEAGR +L  +   L  +      +++    
Sbjct: 679 ---LDMVAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
            K +E+  +  P     +  D   + QV++NL+ NA+KFT   G V ++V          
Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S++D G GI++ +   + + F Q   +      G GLGL I++ ++   GG+  +
Sbjct: 795 LKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S    G E   ++   +  +  P+   E
Sbjct: 855 ESVPGRGSEFYFVVTLEK--SAPPQAQRE 881


>gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 486

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHE+RTPL+ + G+SE +  + +   + E  KE +  I+     +  L
Sbjct: 250 LEKLRRDFVANVSHEIRTPLSMLQGYSEALLDDIVA--SPEERKELVQVIYDESLRMGRL 307

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363
           +N+ LD++R+EAG  ELS     L +++R      Q+ A+E+N+ +   +  +  +V  A
Sbjct: 308 VNDFLDMARMEAGHVELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTPLAVHEA 367

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           DE  + QV+ NL+ NA++ T  G  + +   T    + +   + + D G GI   ++P +
Sbjct: 368 DEDRIEQVLTNLMDNALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPSEDVPYI 427

Query: 421 LTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A K  A  G GLGL I ++I+  H G+  + S L +G     +LP  
Sbjct: 428 FERFYKADKARKRGASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLPVE 483


>gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 504

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 80  FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 139

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 140 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 194

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L    +SL +++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 195 VSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 254

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + +   + +   IS+ D G GIA   I  +   F +       + +G
Sbjct: 255 NAIKYNRPAGQVRIEIEQIAEQ-VTISVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 311

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG   I  LP  RV    
Sbjct: 312 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 355


>gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
 gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
          Length = 1325

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/257 (36%), Positives = 151/257 (58%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      ++ AE  N  KS FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 1067 LRDITQWKRTEEELRTAKRDAETANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGP 1126

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  Y EY  DI  SG+H+L+++N++LD+S+IEAG+ ++  +A+SL D + E + +LQ 
Sbjct: 1127 IGSPRYLEYAHDIGNSGKHVLDIVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQP 1186

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             A  + + I   +  S+  V AD++ ++Q+ LNLLSNA+++T  GG++ V+  +      
Sbjct: 1187 MANSQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNV 1246

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             I I+D G G+   E+   +  FGQ     +   +G GLGLP+ ++++  +  QF I S 
Sbjct: 1247 VIRIRDTGIGMNRKELEQAMKPFGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSA 1306

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P  RVL
Sbjct: 1307 AGEGTLVSIAFPPQRVL 1323


>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 1014

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1498

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 11/271 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D +A     +S   E   R++  N +KSRFLA+MSHE+R  L+ ILG   ++E    G  
Sbjct: 394 DDLAPKNRLESALLEA-HRSKHANESKSRFLANMSHEIRVWLSGILGMIHLLE----GTQ 448

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   E++G I  S Q LL +IN+ILD S+IEAG+  +      + + +   + +L   
Sbjct: 449 LTEEQHEFLGTIKMSAQILLTVINDILDFSKIEAGQLTIERVEFDIFNTIEMVVELLYPS 508

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A  KN+ +   IDP +   V  D   ++Q+++NLLSNA+KFT   GRV +          
Sbjct: 509 AGNKNLLLQCFIDPRIPTKVLGDPSRLQQILVNLLSNAIKFTKK-GRVFLKCTLENETLE 567

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G G+    +  +   F Q   +      G GLGL I++S++   GG   
Sbjct: 568 NATVLFEVHDTGIGLTPDTLARLFRRFSQEDASTTRKFGGTGLGLVISKSLVELMGGSIG 627

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             S   +G      LP   V      D+  +
Sbjct: 628 ADSVSGKGSRFWFRLPVGVVAEQADTDDSNA 658


>gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 806

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 151/251 (60%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I+E +  K+     +K AE+EN  K+ FLA +SHE+RTPL AI+GFSEVI+ +  GP
Sbjct: 550 LHDISEWKQEKNELYHAKKMAEKENSHKNDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 609

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           + +  Y EY   I RSG  +L+++N++LD+S+IE+G+      ++SL + + E I +++L
Sbjct: 610 VGSPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNFHFESVSLNETISEAISLMEL 669

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A EK I +       +  ++AD + ++Q+ LN+LSNA+ FT  GG++ ++  +T  +  
Sbjct: 670 YANEKRILVRTSFSNDIPPIFADLRSIKQIALNILSNAIHFTPSGGQIVISTAYTRNKEV 729

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + +KD G G+ + E+   +  FGQ   + +   +G GLGLP+ ++++  + G+F + S 
Sbjct: 730 VLRVKDTGIGMTDYELEKAMKPFGQIPNSQQVRGEGTGLGLPLTKAMVDANMGKFSVFST 789

Query: 462 LREGVEVIAIL 472
             +G  +  I 
Sbjct: 790 PSKGTLIEIIF 800


>gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
 gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
          Length = 618

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + E   +++    +    ++ +IN+
Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMIND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +          +K   I +++      
Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALW 493

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  +
Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLAKI 552

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612


>gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 1083

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 8/270 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            H       +   +  +  L   +    +  ++ +  AEE    K+ F A+MSHE+RTP+
Sbjct: 448 KHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIRTPI 507

Query: 265 NAILGFSEV-IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           NAILGF+EV ++   +          ++G I  S + LL +IN+ILD+S++E+G++ L  
Sbjct: 508 NAILGFAEVVMQDSDLSSQTAG----HVGTILSSAKSLLGIINDILDVSKMESGKFALEI 563

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
               L + + + +  L+ RA EK++++    D +LS     D   +RQV+LNL  NAVKF
Sbjct: 564 VCFHLPNALADALRTLEHRADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAVKF 623

Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G + + V    +    +  + D G G+ E ++  V  SF Q   +      G GLG
Sbjct: 624 T-EHGSITIGVEVGDAPEILHFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTGLG 682

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             I++ I+    G+  + S+L +G      
Sbjct: 683 TTISKQIVEMMDGEIWVESQLGKGSVFHFT 712


>gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 464

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   TY+   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+  L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMRLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V ++  +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELSTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
 gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
          Length = 660

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             + +  +L  +L    Y  Y        +     +  +   +LE ++    + ++RAEE
Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  KS F+++MSHE+RTPLNAI+GFS +I         N   KEY   +  +   LL L
Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++LD+SR+E+G+ +       L++  +  I  L  R +  +++I  ++      ++ D
Sbjct: 487 ISDVLDISRLESGKLQFKYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423
              ++Q+I+NLL+NA+KFT  GG + +        +    S+ D G GI E +   V   
Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +         QG GLGL I +  +   GG   I    + G   I   P  +
Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654


>gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus 10329]
          Length = 873

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VAL +Q++ S   + + +     +   ++  +           L      +  I +   
Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +        ++++   AKS FLA+MSHE+RTP+NAI+G SE++        N    +E 
Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H+S  +L+ +IN+ILD S++EAG+  L E    L  +V  C  +   +A +KN+++
Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +  ++ + V  D+  + Q++LNL+ NAVKFT   G V + V  +       S+ D G
Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESEHGFD-FSVSDTG 530

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  +  ++  F Q   +     +G GLGL I++ +++ + G+  + S   +G    
Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKGSCFS 590

Query: 470 AI--LPNTRVLNFIPED 484
               LP     +  P +
Sbjct: 591 FSLQLPKRSQPHSEPVE 607


>gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 466

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 149/352 (42%), Gaps = 15/352 (4%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           +  V   +   EY+    S    +   +  L   +L       F   + A      ++  
Sbjct: 127 MLYVARMSSNGEYIFRLASPYSGMQEYLIMLLPAVLLSFAIAFFASSMEAERFSQSITRP 186

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           + DIS              +       +      Q E + +            E  +R E
Sbjct: 187 LQDISRE---------MMKVDGDYADLHFDRCPYQ-EINVIADTTTKMSRNVKEYLERLE 236

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +E   +  F ++ SHEL+TP+ +I G+ E++E      LN ET  +++  I +    + +
Sbjct: 237 QEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETTHDFLKRIKKEAMRMTS 294

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+++IL +SR+E+   +     I + D++ E +  L  +A E+ + I ++ +    ++ A
Sbjct: 295 LVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHKQFES--FAIRA 352

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + M ++ +NL+ NAVK+    G + V     +     ++++D+G GI +  +  +   
Sbjct: 353 DLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFV-LTVRDSGVGIPQESLNRIFER 411

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +        + G GLGL I + ++  + G   + S++ +G      LP  
Sbjct: 412 FYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLPVA 463


>gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 574

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 138/277 (49%), Gaps = 8/277 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L A +    +     RK AE  N AKS FLA MSHELRTPL
Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTTELVTARKDAERANKAKSEFLAMMSHELRTPL 225

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G  + ++   + P      +  + ++  S + LL +I+++LD S+IE+G + L+  
Sbjct: 226 NAIIGLIDTLKSTQLTP----EQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             ++ D V   +   +  A +K + +    D P     + D   + Q++ NL+ NA+KFT
Sbjct: 282 WSNVRDTVTFVLSEQKKAADDKGLTLTISSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G VHV++ +      YI+++D G GI+  ++ ++ + F Q    I     G GLGL 
Sbjct: 342 -EHGHVHVSIKYQQSSF-YIAVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLN 479
           I + ++    G+  + S+  +G +    LP  TRV N
Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVQLPVLTRVTN 436


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  +LV  +  G       L E        L +    T+L  + ++
Sbjct: 1161 FKPGESLIGAAAQEKRTILVDHVPSGYLKIASGLGEAPPAHVIVLPLLFEGTVLGVIELA 1220

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-----ITYHL 207
            A   F      FLS    ++A S   I      +  L                  +    
Sbjct: 1221 AFQQFTHIQRDFLSQLAEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQKA 1280

Query: 208  FKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
             +++   L  +AE         EV  +  ++ R+  EE           KS FLA+MSHE
Sbjct: 1281 LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHE 1340

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1341 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1399

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1400 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1459

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA G++ 
Sbjct: 1460 AVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMR 1519

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1520 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1575


>gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 800

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 171/368 (46%), Gaps = 10/368 (2%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS---FFPVVVALSTQAIM 180
           +        T +YL +  S  + I   +  L N ++  +V         +   +      
Sbjct: 203 VPADYVIRKTHQYLVLVMSTFVGIFAVVIVLINRLVKQSVIQPIQQLMRLTRQVIRGEGC 262

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           S  +  + L              T      NV+        ++  A+L  +   +   R+
Sbjct: 263 SPTLPTVPLTRRTDELGDLSRAFTQMSHTINVRQQDLNRAVNERTAQLAESMQSAQRARQ 322

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  N AKS FLA MSHELRTPLN +LGF +++E +T+    ++  +E +  I+RSG+H
Sbjct: 323 EAEMANRAKSAFLAHMSHELRTPLNVMLGFVQLLERDTL---LSDRQRESLQTINRSGEH 379

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-S 359
           LL LIN++L+LSRIEAGR EL  +A  L   +     M Q+R Q K + +  ++   L  
Sbjct: 380 LLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQEMFQIRVQNKQLSLTLELAKDLPP 439

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIP 418
            V ADE  +RQV++NLL NA+KFT  GG + V VG+          + D G G+A  E+ 
Sbjct: 440 YVVADEGKLRQVLINLLGNALKFTDRGG-ITVRVGYELIRERLAFVVVDTGRGMATAELE 498

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F QG   +    +G GLGL I++  +   GG+  I S +  G  V   +  T   
Sbjct: 499 QLFEPFVQGCTGLNPQ-EGTGLGLTISREFVRLMGGEIQISSAIGCGSTVRFTIKVTPTQ 557

Query: 479 NFIPEDNH 486
              P    
Sbjct: 558 TAPPLPTP 565


>gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei
            87.22]
 gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces
            scabiei 87.22]
          Length = 1424

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 101/410 (24%), Positives = 169/410 (41%), Gaps = 25/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  + V ++          L E        L I     +L  + +
Sbjct: 694  RIPVGRSLVGQAARNRRPISVEELPPNYVTISSGLGEAVPSALVVLPIVVEDQVLGVIEL 753

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITY 205
             +++ F   +  FLS     + ++   I++    D  L                      
Sbjct: 754  GSVTPFTQIHQDFLSQLMPTIGVNLNTIVANARTDELLGESQRLTAELQARSEELQVQQD 813

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++    +      +++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 814  ELQRSNAELEEKASLLASQNSDIEAKNLEIEQARQELETRAQQLALASKYKSEFLANMSH 873

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 874  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 932

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +++   + L  ++       +    +K+++      P   + +  D+  +RQ++ NLLS
Sbjct: 933  MDVTPERVPLRKLLEYVEATFRPMTTQKSLDFTVATAPGTPADLLTDDSRLRQILRNLLS 992

Query: 378  NAVKFTAIGGRV---------HVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQG 427
            NAVKFT  GG V          V  G   G       +KD G GI + ++ T+  +F Q 
Sbjct: 993  NAVKFTEHGGVVLSIEPAADREVPTGVLRGGAVVAFRVKDTGIGIPQQQLETIFGAFQQA 1052

Query: 428  SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
                     G GLGL I + I    GG   + S   +G      LP  R 
Sbjct: 1053 DGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVARA 1102


>gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 732

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 11/274 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +      D + K+  E  + K  F+ +MSHE+RTPLNAILGF+ +++   +   + 
Sbjct: 208 IRRQQQLILELDRSEKKIREIAMIKENFMTNMSHEIRTPLNAILGFTNLLKSRKLDDSST 267

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    ++G I ++G++LL +IN+ILDLS+IEAG   +  +  S+  ++     +   + +
Sbjct: 268 E----FVGSIQKAGENLLTIINDILDLSKIEAGMVRIESNPFSVRGLLHSIQTLFSEKVK 323

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK + +  +I   +  ++  D   + QV++NL+ NA+KFT  GG + ++V      G  I
Sbjct: 324 EKKLVLQGEIASDVPDTLIGDATRLTQVLVNLIGNALKFTEKGG-IVISVSNRQSDGNII 382

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I D G GI   ++ ++   F Q   +I     G GLGL I + ++   GG   + 
Sbjct: 383 QLAFAITDTGIGIEPDKLGSIFDRFNQAEDSITRKYGGTGLGLSIVKDLVILQGGDISVE 442

Query: 460 SKLREGVEVIAILPNTRVLNFIP-EDNHESTQYK 492
           S+  +G      +P       +P  D+ + +Q++
Sbjct: 443 SEPGKGTTFRFFIPYAIASRQMPIPDSIDISQFR 476


>gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 649

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 154/355 (43%), Gaps = 18/355 (5%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
            P  +   + + + +A    A    +   A    + P   A+    +        +LA +
Sbjct: 18  FPRLVFALRWSMIFLAAFGGAYGFIIGSRAESSGYNPHTFAIGASFLF-------ALACL 70

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA------EEEN 246
                S          ++  +     A+++  + + E    +  + R  A      E+  
Sbjct: 71  GLAVQSIRLRWLRRRLQALERHNETLADRNWELRDAEERARVLHQARDEADAPRRDEDAT 130

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KSR LA  SHE+RTPLN I+G S ++    + P        Y   +  SG  L  LI+
Sbjct: 131 RRKSRLLAMASHEIRTPLNGIIGMSGLLLDTALTP----EQATYARAVKTSGDALATLID 186

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           E+LD SRIEAGR+EL     +L  ++ + + +L  RAQ   +EI   ID  +   V  D 
Sbjct: 187 ELLDYSRIEAGRFELDSRPFALTALIEDIVELLAPRAQAGALEIAADIDDRVPSRVIGDA 246

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +RQV+LNL  NA+KFT++GG V +            +++D G GIA      +   F 
Sbjct: 247 ARLRQVLLNLAGNAIKFTSVGGVVLIVQPGERDGEISFAVRDTGIGIAREAQTRIFGEFE 306

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           Q    I  +  G GLGL I+Q I+   GG+  + S+   G    A +P T   + 
Sbjct: 307 QADDGIARSFGGTGLGLSISQRIVERMGGRIALDSQPGRGSTFTASIPLTAADDS 361


>gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 609

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +L +  F+A++SHELRTPL  +  + E +    M   +      ++       + ++
Sbjct: 373 EKIDLERREFVANVSHELRTPLTTMRSYLEALAEGAMHDEDIAPQ--FLNVTRTETERMI 430

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N++L LS++++  Y + +  ++ +D     I      ++E+N+   + +    + V 
Sbjct: 431 RMVNDLLQLSKLDSKDYRMKKEWVNFVDFFNRIIDRFDF-SKEQNVTFQRNLPEHAAFVE 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA+K++  GG+V   +     +   I I D G GI +  +  V  
Sbjct: 490 IDEDKLTQVVDNIISNALKYSPEGGQVSFNIVEQEEQ-LLIRISDQGVGIPKDNLDKVFE 548

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  H G+    S   +G  +   LP  R   
Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEVVEAHDGKIWAESTEGKGTTISFTLPFVRSDE 605


>gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
 gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
          Length = 953

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS  ++++SHELRTPL+++LGF+E++  + + P   E  + Y+  I++  + L N
Sbjct: 576 EVDKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKP---EKQERYLKTIYKEAKRLTN 632

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LDL R+E+G        +++ +++ E +   + +       I    D S   V  
Sbjct: 633 LINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQ---NMHSIVFIDDASDVIVEG 689

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + QV++NL+ NA+KF+  GG V +++         ++IKD G GI   +IP + + 
Sbjct: 690 DRERIAQVLMNLVGNAIKFSPQGGSVTISMK-NDLNNLSVTIKDEGIGIPTEDIPKLFSK 748

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   + +    G GLGL I Q I+  H G+  I SK  +G  V   LP   V      
Sbjct: 749 FQRIDNSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELPL--VAEPQEY 806

Query: 484 DNHESTQ 490
             HE  +
Sbjct: 807 TTHEGAE 813


>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 6/356 (1%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W L   +           + +   + + L+I  +       +  ++   + +    + +
Sbjct: 328 VWGLSVELPEKEAFSRIKQLEQIFVIAMILAIVCVVIASHFLSNSITAPLLRLTWVAERL 387

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +  +    ++      +         + +S  + +     ++    ELE   S+     
Sbjct: 388 SAGDLDQKMISTDRKDEIGRLAVSFARMQRSIREKIQLIKAQN---EELETNLSIIQHKN 444

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  E  +  K  FLA+ SHELRTPL+ ++G +E +     GP++  +++  +  I  SGQ
Sbjct: 445 QELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEIIINSGQ 503

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NL+N++LD  ++  G  +++     L       + +       K I I  ++D SL 
Sbjct: 504 RLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVDKSLP 563

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           SV+ADE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   E+  
Sbjct: 564 SVYADEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIPADELEH 621

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +     Q         QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 622 IFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPLA 677


>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1193

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 107/498 (21%), Positives = 185/498 (37%), Gaps = 26/498 (5%)

Query: 10  KDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN 69
           +D+    S +   L     ++   +       V S      ++ +       +  W    
Sbjct: 276 RDLVARTSSSVGRLVSAAEAEAAENERRTEAAVSSGRTTMLVVAMLTFFGPLLFIWLYLG 335

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
                      +   A      +         E+      L V + A+         +  
Sbjct: 336 RSVVARLAGLASSMHAIAEGDFQAPIPGQGNDEITDMAAELAVFRDAMAKLQESSEALIE 395

Query: 130 GTWTPEYLT---IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH--- 183
                  +        A   ++ S   L N        +     +               
Sbjct: 396 SERRLRRILDTSPLALAISRVSDSAILLVNPRWSELYRVPKARALGMTVASCYSDPANRL 455

Query: 184 --VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-------LIAELEVAKSL 234
             V  +   G +            H F + +     + + +         I   +  ++ 
Sbjct: 456 RLVELVKKRGFVGGFECRMRASDGHEFWAMLSAAEIEMDGEPAVIVSSTDITRHKEEEAA 515

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E +K AEE + AKS FLA+MSHE+RTP+N +L  ++++E   +        +E    I
Sbjct: 516 LAEAKKVAEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL----PAEQREMARVI 571

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   LL +IN+ILD S+IEA + +L    +SL ++V     +L +RAQEK I +   I
Sbjct: 572 RDSATSLLTIINDILDFSKIEADKLQLELVELSLSELVEGVADLLTIRAQEKGISLITFI 631

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409
           DP+L+  V  D   +RQ+I NL  NA+KFT   G V ++V     R +      +I D G
Sbjct: 632 DPALTDMVIGDPIRLRQIITNLAGNAIKFTDK-GYVRISVRALDPRERPLRLEFNITDTG 690

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+   +   +   F Q  + I     G GLGL I + ++A   G+  +RS + +G    
Sbjct: 691 IGLDSEQQARLFEPFMQADVTISRRYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFW 750

Query: 470 AILPNTRVLNFIPEDNHE 487
             +P     +  PE+  +
Sbjct: 751 FQVPLEPA-DVAPEETPD 767


>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 1014

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 3/268 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 445 LEQTNEQLSERTDALDRKNDELMQAQQELQARADELQRSSKYKSEFLANMSHELRTPLNS 504

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L+ E  K +   I+ +G  LLNLIN+ILD++++EAG+ E+     
Sbjct: 505 SLILAKLLAENGEGNLSAEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  +V     M    A+ K +     ++P +   ++ D + + Q++ NLLSNA+KFT  
Sbjct: 564 QLERLVEGLRGMFLPLAEHKGLAFEVNVEPHVPVTLFTDRQRLEQILKNLLSNAIKFT-D 622

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V +T+   +G G   +++D+G GIA  +   +  +F Q   +      G GLGL I+
Sbjct: 623 HGQVSLTISHQAGTGIVFAVRDSGIGIAADQQQAIFGAFHQVDGSSNRRYGGTGLGLSIS 682

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +    GGQ  + S   +G      +P
Sbjct: 683 RDLAHLLGGQISVDSNPGQGSVFSLTMP 710


>gi|266621905|ref|ZP_06114840.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288866436|gb|EFC98734.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 853

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 10/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               +      +  ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + +    T   
Sbjct: 319 LRYFSITRSQLNELEKARQTALEANKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 375

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  +  +  I  S +HLL LIN++LD+S+IE+G+  L+   ISL ++V   + ++Q 
Sbjct: 376 DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQP 435

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           + + K       ++  L+  VW D   + QV+LNLLSNA K+T  GG + +++       
Sbjct: 436 QVKTKKQTFDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTPEGGSIQLSLSEEKSPK 495

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  YI +KDNG G++   +  +  S+ +   A     +G GLG+ I + I+    G
Sbjct: 496 GENYVRIYIKVKDNGIGMSPEFLKRIYESYSRADGARIHKTEGAGLGMAITKYIVDAMEG 555

Query: 455 QFLIRSKLREGVEVIAIL 472
              I+S+  +G E + + 
Sbjct: 556 TIDIQSEPDKGTEFLLMF 573


>gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1216

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 23/322 (7%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              +     L  Q + +  +    L+ +    +      T    +   ++ + Q       
Sbjct: 778  GIWSASQTLRFQLLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRLRRLTAWQ------- 830

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                    L+   ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 831  --------LAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 878

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
            T + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE
Sbjct: 879  TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQE 938

Query: 346  KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            + +    +I      +   D   +RQ++LNLL+NA+KFT   G V + +      +G   
Sbjct: 939  RGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 997

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GG   + S+L
Sbjct: 998  EVADTGPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRL 1057

Query: 463  REGVEVIAILPNTRVLNFIPED 484
              G   +  LP   V +  P D
Sbjct: 1058 GAGTRFVVDLPLHWVASNAPLD 1079


>gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1003

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 177/492 (35%), Gaps = 40/492 (8%)

Query: 3   RSRKNKEKDVG--LLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           R+        G  +++   G    +      +    +IT         +  + + V L A
Sbjct: 301 RAMNGTRASSGGHVVVRRVGTRFVISDRL-PESGLTLITTFSWRSVASATAVGVSVTLAA 359

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
            +           +W  I      A     ++ +                  G + +   
Sbjct: 360 ALFAISM------LWIAIVTFDLRALRPANRRAIRLIESEAFNRTLIRTAPAGLLLLSAA 413

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
                             +      +  L +                      +  +  +
Sbjct: 414 DG--------ETMVRNDAVLAYDDGVSGLPLGKRIWQACRERQRAGADERRFVMQQELAV 465

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                D +             Y+  H+ ++  + +         +   ++ +    E R 
Sbjct: 466 ERAGHDTT-------------YLAAHVVRTKFRGVDVLLCTLTDVTARKLTEDKLREARV 512

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +      T +  +  I  S   
Sbjct: 513 AADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGRAEL----PPTEQRRLKTIVSSSDA 568

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LLN+IN++LDLS+ E+ +  L      L  ++++   + +  A  K + +   +   L+ 
Sbjct: 569 LLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKGLSLECHVAAELAD 628

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
               D   +RQ++ NL+ NA+KFT  GG + +      G        I+++D G GI   
Sbjct: 629 GYVGDPTRLRQLVSNLVGNAIKFTEHGG-ITIDARLARGDARAGCVEIAVRDTGVGIPGE 687

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +PT+   + Q   +I     G GLGLP+ + I     G+  + S+L EG   +A LP T
Sbjct: 688 ALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRLGEGSTFVATLPLT 747

Query: 476 RVLNFIPEDNHE 487
                  +   E
Sbjct: 748 DAPAGCLDAASE 759


>gi|329904038|ref|ZP_08273656.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548159|gb|EGF32872.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 697

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 174/456 (38%), Gaps = 51/456 (11%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLA 81
            L     +   F R   + H ++L R++    + +L+V         N +  +       
Sbjct: 4   RLATIAAALRLFARHRNSEHEQALVRMAMASLICLLVVWQSALAHASNVMLALIGFFLCL 63

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
                + + ++         +    R  + +   A G+   +L                 
Sbjct: 64  SALILIDIRRR--------PQPVRTRRVIAILNDAGGITCGMLFA-----GELGMPIYLF 110

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              +           ++    +       VV              + L   LA    +F+
Sbjct: 111 YLWITFGNGFRFGKPYLYGTLLASLAGLSVVLWQVDFWQQHRAAGLGLWCGLALLGLYFS 170

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   L                                +R E  N AK  F++S+SHE+R
Sbjct: 171 TLVTRLTG----------------------------ALQREEAANQAKRSFISSVSHEMR 202

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+G ++++     G   +   +  +G +  + Q +L L+ ++LD S+IEAG+  +
Sbjct: 203 TPLNAIIGMTDLL----HGTRLDREQEAMLGSLDTAAQLMLALVEDVLDFSKIEAGKLVI 258

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
            ++A     +    I + + +A  + +++   IDP+L   +  D   +RQV++NL+SNA+
Sbjct: 259 EDTAFDPHRLAGGIIDLFRYQAAARGLQLRLDIDPALPHGLCGDPHHLRQVLVNLMSNAI 318

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V + +   +  G+ + ++    D G GIA      +  SF Q   +      
Sbjct: 319 KFTEQ-GHVVLRIALLADAGERVRVRFDIEDTGIGIAPAAQARIFDSFTQADASTTRRYG 377

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLG  I++ ++   GGQ  +RS +  G      L
Sbjct: 378 GTGLGTTISRQLVELMGGQLGLRSSVGAGSTFWFEL 413


>gi|251836869|pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
 gi|251836871|pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
          Length = 258

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                +  +R +  +  K+ F+A++SHELRTPL AI  ++E I    +G L+  T KE++
Sbjct: 3   NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 61

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I     HL NL+NE+LD SR+E    +++   + L D+V   +  ++  A   N+ + 
Sbjct: 62  EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 121

Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407
            + + P     + D   +RQV+LNLL+N VK++        V V +      G  I ++D
Sbjct: 122 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 180

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F +   ++     G GLGL I + I+  HGG+  + S++ +G  
Sbjct: 181 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 240

Query: 468 VIAILPNTRVLN 479
               +P  R   
Sbjct: 241 FFVWIPKDRAGE 252


>gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 867

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   ++
Sbjct: 622 IQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSS 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++++  I+ +   LL L+N+ILDLSRIE+G  +   S+ +L  I+++     Q  + 
Sbjct: 680 EEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDS-QRLSM 738

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + +E+           +  D   ++QV+ NL++NA KFT   G + +           I
Sbjct: 739 PQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTK-GYILLGYRVEDSGHTVI 797

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI++  +  +   F +         QG GLGL I Q+I+    G   + SKL 
Sbjct: 798 FVEDTGSGISDENLGHIFERFYKADN----FTQGAGLGLSICQTIVERLNGTITVTSKLG 853

Query: 464 EGVEVIAIL 472
           +G      +
Sbjct: 854 KGTRFEVRI 862


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  +LV  +  G       L E        L +    T+L  + ++
Sbjct: 1190 FKPGESLIGAAAQEKRTILVDHVPSGYLKIASGLGEAPPAHVIVLPLLFEGTVLGVIELA 1249

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-----ITYHL 207
            A   F      FLS    ++A S   I      +  L                  +    
Sbjct: 1250 AFQQFTHIQRDFLSQLAEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQKA 1309

Query: 208  FKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
             +++   L  +AE         EV  +  ++ R+  EE           KS FLA+MSHE
Sbjct: 1310 LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHE 1369

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1370 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1428

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1429 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1488

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA G++ 
Sbjct: 1489 AVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMR 1548

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1549 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1604


>gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
          Length = 465

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 150/329 (45%), Gaps = 12/329 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-ITYHLFKSN 211
            +    +PY+    + P++   +  + +   V  +       ++++     I+  + K  
Sbjct: 138 MVLRLAVPYSGIQEYLPMLFPAAILSFLMAMVCSVVTTRRFVSSVTRPLRDISKAVMKVK 197

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELRTPLN 265
                 Q E         +A ++ + ++       + E+E   +  F ++ SHEL+TP+ 
Sbjct: 198 GDYTELQFESCQYPEINVIAGTIMNMSKDVKEYLSQIEKEKQIRQEFFSNASHELKTPIT 257

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I G++E++E   +   ++    ++   I +    +  LIN+IL +SR+E+   E+  S 
Sbjct: 258 SIQGYAELLESGMI--QDDGLKLDFAKRIKKEAAGMTGLINDILMISRLESMDAEVMFSD 315

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + +  +++E +  L+  A    + +     P    + A+ + M+++  NL +NA+K+   
Sbjct: 316 VRISVLLQEIMDSLKPLAASCQVFLHVDCKP--LCIRANLQQMKELFTNLATNAIKYNRP 373

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG+V +TVG        + +KDNG GI +  +  +   F +        + G GLGL I 
Sbjct: 374 GGQVWITVGEQGDDML-VRVKDNGVGIPKESLDRIFERFYRVDKGRSRKQGGTGLGLSIV 432

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + I+  + G   + S+L +G E    +P 
Sbjct: 433 KHIVNFYHGTIHVTSELDKGTEFTVTIPL 461


>gi|330959044|gb|EGH59304.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 652

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 144/332 (43%), Gaps = 12/332 (3%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F   F   +ALS    +S     +                   L      I         
Sbjct: 191 FTFLFARRLALSLSRPISDMAGALEAIQQGDYHTPLPVSDDAELGALARHINDLADNLHR 250

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              E + + +   + R+ AE+ N AKS FLA MSHELRTP+N +LG  +++E   M    
Sbjct: 251 TSLEQQRSVAQLIQMREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---- 306

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +   EY      S +HLL +IN+ILD SRIE    ++   A +L ++V          A
Sbjct: 307 TDEQSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSA 366

Query: 344 QEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            ++ + +   I P L   +V  D   +RQ+++NL+ NA+KFT   G V V   W      
Sbjct: 367 LQRKLLLKLHIQPGLEALTVVGDPTRIRQILVNLIGNALKFTEQ-GTVSVDAEWAMLDHD 425

Query: 402 YI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           ++    ++ D+G GI    + ++  +F Q   +I     G GLGLPIA+++    GG   
Sbjct: 426 HLRFTCTVHDSGIGIEADRLESMFDAFRQADSSISRRYGGTGLGLPIARTLAERMGGTLR 485

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            +S+   G      +P   V   +P D  E  
Sbjct: 486 AQSEEGSGSVFTLQIPLA-VSRDVPVDVSEQP 516


>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
 gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 764

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 12/284 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +   A     I+E +   +      + AE     K+ FLA+MSHE+RTPLNAI+G + ++
Sbjct: 353 VRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSHEIRTPLNAIIGMAHIL 412

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +        K+Y+G I  +G+HLL LI  +LD+S+IEAGR EL    +++ +IV E
Sbjct: 413 SRTELDT----AQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRLELENIPLAVENIVFE 468

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393
            + M+  +A EK +++      + S +  D   +RQ +LN +SNA+KFTA G   V V  
Sbjct: 469 VLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNAIKFTADGSIDVRVIT 528

Query: 394 GWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              S         + D G GI+      + ++F Q   +      G GLGL I + +   
Sbjct: 529 QAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYGGTGLGLAITRQLAEL 588

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVL-----NFIPEDNHESTQ 490
            GG+  + S   +G          R         IP  + ES +
Sbjct: 589 MGGEVGVSSTPGQGSLFWFTASLKRASAPLARPAIPLLSAESAE 632


>gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG2J17]
          Length = 669

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 1/256 (0%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    +  +RAE  N AK+ FLA MSHELRTPLNAILG+S++++ +  GPL N
Sbjct: 412 ITDRKQAEESLRKAMERAEFANRAKAEFLAHMSHELRTPLNAILGYSDILKSQVFGPLGN 471

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E Y +Y+ +I  +G HLL ++++ILD+S++EAG  ++ +S I +   ++EC IM+  RA 
Sbjct: 472 EKYSDYVENISAAGGHLLGILSDILDVSKVEAGELDIEDSEIDIAAAIKECKIMMLERAD 531

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              + +   +   L  + AD + +RQ++LNLLSNAVKF+   G+V +     +     I 
Sbjct: 532 IAKVSLASLVAGDLPRLRADRRRLRQILLNLLSNAVKFSHEKGKVSIAAETDAAGAIVIR 591

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLR 463
           + D G GIA   +  +L  FGQ   +       G GLGL +  S+M  HGG   I S   
Sbjct: 592 VADTGIGIAPENMGKILQPFGQVKESYVGKPGEGSGLGLSLVNSLMDLHGGTLDIDSTPG 651

Query: 464 EGVEVIAILPNTRVLN 479
           EG  +  I P  R LN
Sbjct: 652 EGTTMNIIFPPERTLN 667


>gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1358

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 132/280 (47%), Gaps = 24/280 (8%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E + A+      R+ AE    AKS FLA+MSHELRTP+N +LG  ++++   +    +
Sbjct: 931  ITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATPL----D 986

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + Y+   H +G +L  L+ ++LDL+R+E+GR  + E       + +E + +L+  A 
Sbjct: 987  PEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAVLRPEAD 1046

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
             K I +    D    ++  D + +RQ++LN++ NAVKFT   G V +   +    G    
Sbjct: 1047 RKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDR-GHVRLLARFEPSAGPSAT 1105

Query: 401  --------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                           Y++++D G GI    +  +   F Q   A+     G GLGL I +
Sbjct: 1106 AEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGLGLSIVR 1165

Query: 447  SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             I+    G+  + S+   G  V   LP    ++ +P    
Sbjct: 1166 RIVDLMEGEVSMTSEEGRGTTVTLRLPVA-AMDRLPAQEP 1204



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 157/416 (37%), Gaps = 34/416 (8%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIA----IGLCWTLLTLVEPGTWTPEYLTIYKSA 143
                  ++             +L+  +     + L W L   + P  W   Y  ++  A
Sbjct: 29  FASDVFSSAPPASLAFVASARGMLLALVLPLGTLALQWMLWDYIRPYVWFLFYPAVF-LA 87

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201
           +L   L+   ++  +    V   F P V++      + +  + + L   L  +L+     
Sbjct: 88  SLAGGLAGGLIATLLSALLVLYFFIPPVLSFMVVKPVDVVAVAMFLGIGLMISLAHQRVR 147

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                + ++  +  + + E D+  + L    +       RAEE ++ K+RF A++SHELR
Sbjct: 148 DAVRRVVETQERQQAERVEADEATSRLRATNAELAARCARAEELDVLKTRFFANISHELR 207

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
                +      +E        ++ ++  +  + R+ + L   ++++LDLSR++AG  + 
Sbjct: 208 ---TPLTLLLGPLERLLAETSEDDEHRHSLFTMLRNARLLHQHVDDMLDLSRVDAGAMQP 264

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             +   L  + R         A ++ +    +    L     D    R+++LNLLSN+ K
Sbjct: 265 RHAEADLSALTRTTCAYFDTLAAQRGMHYGVQAPLRL-DAQVDTDKYRRILLNLLSNSFK 323

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ-GSIAI-----KSAE 435
           FT  GG V VT+    G    +S+ D+GPG+       V   + Q G  A          
Sbjct: 324 FTPDGGSVSVTLERQ-GDEALLSVSDDGPGVPAHLRGAVFERYRQSGEGARGLHGGSGLG 382

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE----VIAILPNTRV--LNFIPEDN 485
                   I +     HGG   +     +G E        LP      +   P ++
Sbjct: 383 L------AIVKEFAELHGGTTSV----GQGAEGGALFQVRLPLAAPPGVEVAPAES 428


>gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 939

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 11/255 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + + E    +    + ++ A+  N AKS FLA+MSHE+RTP+N I+G  E+     +   
Sbjct: 541 EDVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIEL----ALLKD 596

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   +  +    +S  HLL++IN+ILDLS+IEAG+ EL    + L  IV + +  L L 
Sbjct: 597 PSCPARGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSLA 656

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSG 398
           A  K + +   I+  +   +  DE  +RQV++NL+ NAVKFT   GR+ V V     T G
Sbjct: 657 ASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHE-GRILVNVETVLRTDG 715

Query: 399 RGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D G GI E  +  +  SF Q +I  ++   G GLGL I++ ++   GG+ 
Sbjct: 716 GRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGEV 775

Query: 457 LIRSKLREGVEVIAI 471
            +RS    G      
Sbjct: 776 SVRSTPGHGSSFTFT 790


>gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 289

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE +    +G +
Sbjct: 3   RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 62

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   ++ L +++   +++++ +
Sbjct: 63  TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 121

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  ++I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V         
Sbjct: 122 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 181

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 182 LIDGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 241

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           LGL + + +   HGG   + S    G   +  LP     + 
Sbjct: 242 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 282


>gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 576

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 19/290 (6%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              Y      +   +        + L  E+ + K       + A+  N AKS FL+ +SH
Sbjct: 293 LLRYHDELERRVAERTAELTRANERLTHEVTIRKR----AEEAADAANRAKSEFLSMVSH 348

Query: 259 ELRTPLNAILGFS------------EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           E+RTPL +++GF+             ++  +       E   E +G I   G+ L +LIN
Sbjct: 349 EIRTPLTSVMGFAVIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGIIVSEGERLKHLIN 408

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQ-LRAQEKNIEIFQKIDPSLSSVWADE 365
           ++LDL+++EAG+       +   ++VR  +   + L A    + +   I   L  V  D 
Sbjct: 409 DVLDLAKLEAGKMAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTSIQGRLPEVIGDR 468

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV++NL+SNA+KFT   G V      T+     I + D G GI E E   V   F 
Sbjct: 469 DRLIQVLVNLVSNALKFTEQ-GSVTCRA-RTADGYVVIDVADTGIGIPEAEQHKVFEKFN 526

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           Q    + +  +G GLGL I + I+ +HGG+    S+   G      LP  
Sbjct: 527 QIGATLTNKPKGTGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALPIA 576


>gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 543

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++  ++A+  +  KS FLA+MSHE+RTPLNAI+GFS ++  E    L  E  +EY 
Sbjct: 305 EDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSD-LRPEDIEEYA 363

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I ++GQ L+ LI++ILDLS+IE+   E + S  SL  +  +   M +L  +   +E+ 
Sbjct: 364 ALIEKNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVK-PGVELI 422

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +     S+ AD   + QV+ NL++NA+KFT+  G + +       +   + ++D G G
Sbjct: 423 ADLPAEDVSITADPVRLEQVVNNLINNAIKFTSR-GSIRIGYRRRGEKDVELFVEDTGKG 481

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++E  I  V   F +G     S  QG GLGL I ++I+ + GG+    S++ EG      
Sbjct: 482 MSEEVIAHVFERFYKGD----SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVC 537

Query: 472 LPNTR 476
           LP  R
Sbjct: 538 LPIGR 542


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 17/243 (6%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+N ++  + ++    +        + Y+  IH S + LL +IN+ILD
Sbjct: 156 EFLANMSHEIRTPMNGVIAMTGLLLETNLNN----EQRSYVETIHSSSESLLTIINDILD 211

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            S+IE+G+ EL     +L   V E + +L  +A EK +++  ++D  +   V  D   +R
Sbjct: 212 FSKIESGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLR 271

Query: 370 QVILNLLSNAVKFTAIGGRVHVTV-------GWTSGR----GQYISIKDNGPGIAEGEIP 418
           QV++NLLSN +KFT   G V V V         T+        + +++D G GI   +I 
Sbjct: 272 QVLVNLLSNGIKFTNE-GEVFVHVKIHSASPEPTADDATRLQLHFTVRDTGIGIHPTQID 330

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +  SF Q   +      G GLGL I++ ++   GG+  + S L+ G     ++P    +
Sbjct: 331 RLFKSFSQADASTTRQYGGTGLGLAISKRLVELMGGKMWVESTLQRGSTFHFLIPFRPAV 390

Query: 479 NFI 481
              
Sbjct: 391 AAP 393


>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 988

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 321 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 378

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 379 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 438

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 439 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 491

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 492 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 547

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 548 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 607

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 608 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 666

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 667 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 726

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 727 TVALPLREA 735


>gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
 gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
          Length = 433

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 9/269 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +++  +  +  Q  K  +I  +   + +++  +      N+ K  F+A++SHEL+TPL +
Sbjct: 170 VYRIKIDPVYLQDSKHAIIGSIINIEDITELVKLE----NMRK-DFVANVSHELKTPLTS 224

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I GF E ++      ++  T   ++  I +    L  LI +IL LS IE G+ +LS   +
Sbjct: 225 ITGFVETLK--INDDIDKNTRNHFLDIIEKESNRLKGLIEDILLLSSIENGQ-DLSYEKV 281

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L D+ +E   + +  A  KNI I    +     ++     ++Q+ LNL+ N +K+T   
Sbjct: 282 KLFDVFKEVCEITEYIASSKNITISYNFEDEDVCIYGFRDNIKQIFLNLIDNGIKYTPKD 341

Query: 387 GRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           G + V   +    +   +  KDNG GI +  +  +   F +   A      G GLGL I 
Sbjct: 342 GHIEVVQHYDENRQNIILEFKDNGIGIPKESLNRIFERFYRVDKARSRDIGGTGLGLAIT 401

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++ + GG   + S L  G + I  +P 
Sbjct: 402 KHMVKSLGGNITVESILGIGSDFIVTIPV 430


>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1666

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 10/238 (4%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            R  AE+    KS FLA+MSHE+RTP+NAI+G S +     +    N   ++Y+  I +SG
Sbjct: 944  RDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTEL----NPRQRDYVKKIQQSG 999

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            QHLL +IN+ILD S+IEAG+ E+  + + L  ++     ++  +A  K +E+   +   +
Sbjct: 1000 QHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKASAKGLELLFDLGAGV 1059

Query: 359  S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIA 413
               +  D   + QV++N  +NAVKFT   G + V V      G        ++D G G+ 
Sbjct: 1060 PLDLMGDSLRLGQVLINYANNAVKFTEE-GEIVVAVRLLEDLGAEVMLRFEVRDTGIGLT 1118

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            E +   +  SF Q   +      G GLGL I++ +    GG+  + S   EG      
Sbjct: 1119 EEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVGVDSVPGEGSTFWFT 1176


>gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 153/308 (49%), Gaps = 13/308 (4%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             ++++L    +  + +  ++L   +   +   T     + +    +   +   D++   
Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKAMAQGRFDVRVSKRYDDEIGEL 227

Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            +    ++ E    +       K+ F+AS+SHELRTPL +I+G+   I    +   + E 
Sbjct: 228 GDTLNYMAQEVANHQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            KE +  I R  + L  L++E+LD S+ +AG   L +S ++L ++++     ++ RA+ K
Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +   +D  L  + ADE  ++QV +N++ N+ KFT  GG + + +G  +  G  I I+
Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E ++P V   F +GS  +     G GLGL I   I+  H G+  I S + +G 
Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455

Query: 467 EVIAILPN 474
            V  ILP 
Sbjct: 456 RVDVILPV 463


>gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1120

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 14/242 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA+MSHE+RTPLN ILG+++++      P  +   +  +  I  SG+ 
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDR---PERDPEDQRRLELIRVSGEV 638

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N++LD+S+IEAG+  L     +L  ++ + + +++  A +  + +  +ID +L +
Sbjct: 639 LLTVVNDVLDVSKIEAGQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPA 698

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410
            V  D   +RQV+ NLL+NAVKFT   G V +TV +                  I+D G 
Sbjct: 699 SVIGDANRLRQVLFNLLNNAVKFTPA-GSVTLTVRYEGSVRDAEGGRREALRFEIRDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  +   +   F Q   +I     G GLGL I Q ++   GG   + S    G     
Sbjct: 758 GIAPSQQHRLFKPFSQVDGSISRRFGGSGLGLAICQRLVTMMGGAIGVESVEGVGSIFWF 817

Query: 471 IL 472
            L
Sbjct: 818 TL 819


>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 998

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 170/459 (37%), Gaps = 47/459 (10%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
              ++      +   +V    R + +  + V ++  +           +           
Sbjct: 167 AERAQPAPGAGLAQAYVIPFVRTATLRGVPVKMLVAVNPGSLFPHYRAVLGAEVTNATLL 226

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
           +                        L G  A+G          P          +     
Sbjct: 227 DYQGNV-------------------LAGTAAVGFAVNQNYARLPLFADLARNVEHGQFRY 267

Query: 146 LIALSISALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +    + + NF        ++   +    + Q   +       L  +LA  +  +T + 
Sbjct: 268 TMGGEDAYIVNFQAARKFPLVAMVGMSEMHAVQRWSAGAGNLNWLGALLAAVVLVYTAVL 327

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           + + +                   E  +    + +  AE+ N A+  FL+++SHE+RTP+
Sbjct: 328 WRVMR-----------------HREDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPM 370

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA++G S ++    +    +   +E+   I  S   L+ +I+EILD SRI+AG+  +  +
Sbjct: 371 NAVIGMSGLLRETAL----DAQQEEFTVAIEDSANALMVIIDEILDFSRIDAGKLTIEAT 426

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              L+ +V      L ++A+++ + +   ++P L   V  D   +RQV+LNL+ NAVKFT
Sbjct: 427 DCHLLSLVEGSADALAVKARQQGLRLLCFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFT 486

Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V + V   + +         + D G GI    I  +   F Q   ++     G G
Sbjct: 487 PA-GEVRILVRQVNRQHDLCTVRFEVADTGIGITAPVIALLFNPFVQADGSVTRKYGGTG 545

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           LGL I + ++   GG   + SK   G      LP T V 
Sbjct: 546 LGLSICKRLVELMGGHIGVDSKPGAGSTFWFELPVTVVA 584


>gi|225390145|ref|ZP_03759869.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
 gi|225043798|gb|EEG54044.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
          Length = 852

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               +         ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + +        
Sbjct: 318 LRYFSITRSQLHELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHI--- 374

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  +  +  I  S +HLL LIN++LDLS+IE+G+  L+   ISL +++   + ++Q 
Sbjct: 375 DDRKQVQNCLRKITLSSKHLLGLINDVLDLSKIESGKLTLTIEQISLKEVIEGIVSIMQP 434

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--- 397
           + + K       ++  L+  VW D   + Q++LNLLSNA K+T  GG + +++       
Sbjct: 435 QVKAKKQNFDIHVENILTENVWCDGVRLNQILLNLLSNATKYTPEGGSIQLSLSEEKSPK 494

Query: 398 -GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                 IS  +KDNG G++   +  +  S+ +         +G GLG+ I + I+    G
Sbjct: 495 GENYVRISIKVKDNGIGMSPDFLKKIYESYSRADGTRVHKTEGAGLGMAITKYIVDAMEG 554

Query: 455 QFLIRSKLREGVEVIAIL 472
              I+S+  +G E   + 
Sbjct: 555 TIDIQSEPDKGTEFFLMF 572


>gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 873

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 5/328 (1%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            +++ ++          VF +   +        I        ++  + A   +    I Y
Sbjct: 393 TLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQSAIIGY 452

Query: 206 HLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            L  ++       +AE+  L   L++     +     AE+ NLAKS FL+SMSHELRTPL
Sbjct: 453 LLIGTDNTARKQIEAERTTLHEALQLKNVELERATFVAEKANLAKSDFLSSMSHELRTPL 512

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            AILGF+++IE  T  P    + K+ I  I ++G +LL LINE+LDL+ IE+G+  LS  
Sbjct: 513 GAILGFAQLIESGT--PAPTASQKKSIDQILKAGWYLLELINEVLDLALIESGKLALSLE 570

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L D++ EC  M++ +AQ + I +  K       V  D   ++Q+++NLLSNA+K+  
Sbjct: 571 PVLLADVMHECEAMIEPQAQSREINVIFKQPEVPYCVRGDRTRVKQIVINLLSNAIKYNR 630

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           + G V V    T      IS++D G G+ + E+  +   F +      + E+G G+GL +
Sbjct: 631 VNGTVTVECSITPHDTVRISVQDTGAGLTDEELTQLFQPFNRLGQ--NTKEEGTGIGLVV 688

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + +     G+  + S + EG      L
Sbjct: 689 CKRLTDLMKGKIGVESIVGEGSTFWIEL 716


>gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 610

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 183/433 (42%), Gaps = 19/433 (4%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            +    L    + +   + +      +W   T            +++  ++        R
Sbjct: 163 AASSATLAAFGITSAALYASGLAYGAVWLARTNGALLNVEEERYRLLARNMSDVISRHNR 222

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
                           +  + P         + + A   +   +          A+  + 
Sbjct: 223 N-------------GAVRFISPAAENLLGTPVARLAEHGLFDRVHVADRPAYLKAMSDAA 269

Query: 168 FPVVVALS---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN--VKILSCQAEKD 222
                       +  ++        A            +  +L  +       +      
Sbjct: 270 RGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTAASNAGETEVVAVM 329

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E ++ +   D+ R  A+  + AKSRFLA+MSHELRTPLNAI+GFS++I  + +  L
Sbjct: 330 RDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLML 389

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  KEY   I+ SGQHLL+++N ILD+S++E+G +E+     +    +  C  +L L+
Sbjct: 390 GPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALK 449

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++  I++  +   +L  V  D +  +Q++LNL+SNA+KFT  GG V V+     G    
Sbjct: 450 ARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTRLV 508

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D G GIAE ++  +   F Q     +   +G GLGL I +S++  HGG+  ++S++
Sbjct: 509 LRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQI 568

Query: 463 REGVEVIAILPNT 475
             G  V   LP  
Sbjct: 569 DCGTTVTVSLPLA 581


>gi|83754490|pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
           Histidine Kinase Protein
          Length = 258

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                +  +R +  +  K+ F+A++SHELRTPL AI  ++E I    +G L+  T KE++
Sbjct: 3   NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 61

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I     HL NL+NE+LD SR+E    +++   + L D+V   +  ++  A   N+ + 
Sbjct: 62  EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 121

Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407
            + + P     + D   +RQV+LNLL+N VK++        V V +      G  I ++D
Sbjct: 122 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 180

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F +   ++     G GLGL I + I+  HGG+  + S++ +G  
Sbjct: 181 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 240

Query: 468 VIAILPNTRVLN 479
               +P  R   
Sbjct: 241 FFVWIPKDRAGE 252


>gi|320038754|gb|EFW20689.1| sensor histidine kinase/response regulator [Coccidioides posadasii
            str. Silveira]
          Length = 2340

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E R      EE  
Sbjct: 1819 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1878

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1879 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1934

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L   + E +  L+   +++ +E  + +D       V  D
Sbjct: 1935 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1994

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V           I +     D G GI+   +  +
Sbjct: 1995 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2053

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461
               F Q   +   +  G GLGL I ++I+    GG+  +RS+
Sbjct: 2054 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2095


>gi|317486463|ref|ZP_07945288.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922266|gb|EFV43527.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 781

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 9/262 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           S   +  + +    + +   ++  + A+  N  K+ FL+ MSH++RTP+NAI+G + +  
Sbjct: 234 SLGIDVTETVERQRLQQQALEDACRVAKHANQGKTEFLSRMSHDIRTPMNAIVGMTAIAG 293

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                  + +  ++ +  I+ S +HLLNLINE+LD+S+IE+GR ++  +  SL ++V+  
Sbjct: 294 AHI---EDTQKVRDCLKKINTSSKHLLNLINEVLDMSKIESGRLDVRANDFSLSNLVQNV 350

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             + +    EK   +   I       ++ DE  ++QV++N+LSNAVK+T  GGR+H ++ 
Sbjct: 351 FEVCRPMIIEKGHHLTMNISKVRHEGLYGDESRLQQVLVNILSNAVKYTPAGGRLHFSIE 410

Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                 +     Y + +DNG G++E  +  +   F +   +  S  QG GLG+ I+Q+I+
Sbjct: 411 EKPTHAEGASVFYFTFEDNGIGMSEEFVGRIFEPFSRAEDSRISKIQGTGLGMAISQNII 470

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
               G+  + S L +G      
Sbjct: 471 HMMNGEITVDSTLGKGSRFTVS 492


>gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 775

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 6/280 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            IL    E   +       +        +AE  N +K  FLA+MSHELRTPLNAI+GFS+
Sbjct: 384 DILHIFLEILKITLINREKEHKLTIFADKAESANRSKDMFLANMSHELRTPLNAIIGFSQ 443

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++     P N    + YI  I  +G +LLNL+N ILD +++EAG+         L DI 
Sbjct: 444 ILQTREEIPQN---MRSYIEKISIAGNNLLNLVNTILDFAKLEAGKISYHPRMTLLSDIA 500

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +E  I++   A+ KNI +    D SL +++ D + M+Q ++N+LSNA+KFT   G V  +
Sbjct: 501 KEISIIISPLAEAKNITLTMPADISL-ALFIDAQLMKQSLINILSNAIKFTPNDGEVIFS 559

Query: 393 VGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA- 450
           + +   R QY+ SI DNG G+ +  I  + T F Q    +++A +G GLGL I + I+  
Sbjct: 560 ITFDKQRNQYVLSICDNGVGMDKESISQLFTPFTQIDNHLQTASKGTGLGLVITKKIVED 619

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            HGG+  + S + EG      +P    L  I     +++ 
Sbjct: 620 LHGGKIWVESSVGEGSCFYIAVPIQTELTKIEIFASKNSD 659


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 17/283 (6%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRAEEENLAKSRFLASMSHELRTPL 264
                 +       E+ +L          +D   RK+ E      + F++ +SHELRTPL
Sbjct: 237 RTKTGQIGTALLSIERIELAGVPCALNIANDITERKQLE------NEFISLVSHELRTPL 290

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +++G  +++    +G L     +  +     + + L+ LIN+ILDL RI+AG+  + + 
Sbjct: 291 TSLMGALDLLGTGQLGNLT-PKGQHVLRIATTNTERLIRLINDILDLERIKAGKITMQKV 349

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                +++ +    LQ  A + N+++    +P   ++ AD   + Q + NLLSNA+KF+ 
Sbjct: 350 RCDAAELITQAAEALQEMAHQANLQLVV--EPIAVALIADPDRILQTLTNLLSNAIKFSE 407

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV +  G   G   ++ ++D G GI   ++ T+   F Q   +    + G GLGL I
Sbjct: 408 PQGRVWLR-GQVEGEILHLQVQDQGRGIPADKLQTIFERFQQVDASDSRKKGGTGLGLSI 466

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            +SI+  HGG+    S L EG      LP        PE +HE
Sbjct: 467 CRSIVNLHGGKIWAESVLGEGSTFHIHLPLN------PEADHE 503


>gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 645

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/358 (26%), Positives = 156/358 (43%), Gaps = 22/358 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L  +++          A+ LS     +  + +AI   
Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +   +TR+ A
Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-- 360
            +IN+ILD SRIE    ++     +L ++V          A ++N+ +   I P L +  
Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLETMN 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416
           V  D   +RQ+++NL+ NA+KFT   G+V V   W        + +  ++D+G GI    
Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++  +F Q   +I     G GLGLPIA+++    GG     SK   G      +P 
Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESKEGSGSLFTLQIPL 493


>gi|291537791|emb|CBL10902.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 437

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 12/291 (4%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243
            +  +         + +Y L +  +  +   A+   L+ E EV + +    S   ++  +
Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIEKMADNIILVDETEVYEEMRPFISMIKKQHMD 212

Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             N    +  F A++SHEL+TPL AI G++E+I     G  +      +  +IH+S + L
Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +LIN+I+ LS ++    +L    + L D+  +CI  +Q++A +  + +    + +   +
Sbjct: 270 QSLINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             ++  + +++ NL SNAV++   GG V +     + R   I +KD G GI + +   V 
Sbjct: 328 NGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   +   +  G GLGL I + I+A H  Q  + S++  G E+  + 
Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437


>gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10]
 gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10]
          Length = 553

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 145/319 (45%), Gaps = 15/319 (4%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             + +        + G +AT    +  +   L            +   L A  E      
Sbjct: 92  LNSQILRDSPAALMEGFIATRNGDYAGVGTTLELFRFIAQESADKNHRLSALAEQ----L 147

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              R  A   + AKS FLA+MSHE+RTPLN +LG +++++  T+    +    E++  I 
Sbjct: 148 GRARLEALAASKAKSDFLATMSHEIRTPLNGVLGVTQLLQATTL----DAEQAEFVRVID 203

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+ LL L+N+ILDLS+IEAG+ EL  +      +VR+   +   +A+EK I    + D
Sbjct: 204 DSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIEAD 263

Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGP 410
               +    D   ++Q++ NL+SN +KFT   G V V + +     +     + + D G 
Sbjct: 264 CDEDAQYEGDPVRIKQLLFNLISNGIKFT-QSGSVAVRMQFLPLGRRRNVMRVEVVDTGC 322

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +  +  + ++F Q  +A      G GLGL I + +    GG   + S+  EG +   
Sbjct: 323 GIPDTALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTSRPGEGSKFWF 382

Query: 471 ILPNTRVLNFIPEDNHEST 489
            +P   V    P+    +T
Sbjct: 383 DIPLKSV-TTAPQTVSAAT 400


>gi|326389794|ref|ZP_08211358.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994062|gb|EGD52490.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 457

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 12/312 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDD 223
           L F  +  A +    +S  +    +       + +       +    + K L    E D+
Sbjct: 157 LLFILMFFADAAGIFVSF-IAGYFVTKRALRPVDYMAKEVREIDAHGLNKRLKIYGEDDE 215

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    +    + D    R E+    ++ F++  SHELRTP++ I G+ +++  +  G  +
Sbjct: 216 LTRLAKTFNDMLD----RLEDSFKRQNMFVSDASHELRTPISVIKGYIDML--DRWGKED 269

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E I  I R    + +LI  +L L++ +    +L++   +L D+++E    +++  
Sbjct: 270 KAVLQEAIEAIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLN 329

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + KNI +  + D    ++ AD+K ++++I   L NA K+T+  G + + VG  + +  YI
Sbjct: 330 ESKNIVVKGQND---INITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSK-AYI 385

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            IKD+G GI + +IP +   F +   A      G GLGL IA+ I+  H G   ++S++ 
Sbjct: 386 KIKDDGIGIPQEDIPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVG 445

Query: 464 EGVEVIAILPNT 475
           +G E    LP  
Sbjct: 446 KGSEFTITLPLR 457


>gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 790

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  DL  +LE   ++     + AE  N  KS FLA MSH++RTP+NAI G   +     
Sbjct: 247 TELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLISIARDCV 306

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P+     +E +  +  S   LL+LIN+ILD+S+IE+GR EL +   S +  + + +  
Sbjct: 307 NDPV---KIRECLNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFIDDIVSA 363

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
           +  +AQ+K I    +I  ++  ++  D   ++Q++ NLLSNA+KFT  GGRV + V    
Sbjct: 364 VYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQVEEGQ 423

Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ DNG G+    I  V   F Q  +  +    G GLGL I  S +    
Sbjct: 424 RIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQ-DVRHRENRGGSGLGLAIVHSYVQLMN 482

Query: 454 GQFLIRSKLREGVEVI--AILPNTRVLNFIPE 483
           G+  + S+  +G   +    L     L   P+
Sbjct: 483 GRVDVESEPGKGSRFVAQVWLDPVEALPEQPD 514


>gi|206601972|gb|EDZ38454.1| Putative multi-sensor hybrid histidine kinase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 849

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 160/401 (39%), Gaps = 20/401 (4%)

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-PGTWTPEYLT 138
           + V          + +     G        +L       L    + L          +  
Sbjct: 35  VIVGLLASFYLYSLHHVPGVSGIPLSAHSMILPVNAYTILLLGTIYLFPGYHPIRIIFGI 94

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
               + +++ ++++ +    L                           + +A  L+    
Sbjct: 95  AGDLSLVMLVMALTGVKGLPLGVVDLWVI--------MGNGFRFGPRYLGVATGLSAVEF 146

Query: 199 FFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              Y     ++ +  +   Q      L   + V  +  ++  + A   N +KSRFLA+MS
Sbjct: 147 IGVYRVNPWWQQHTVLFDTQLIGMIVLPLYMAVLLTKLEKLIEAANAANQSKSRFLANMS 206

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN I+G SE++  +      +    E +  +  S +HL ++I +ILD SR+EAG
Sbjct: 207 HELRTPLNGIMGLSELLREQ-----ASPRQNELLNTLQGSARHLSDIIGKILDFSRLEAG 261

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R  +S     +  +V E +  L   A++KN+ +   +D    S +  D   ++Q++ NLL
Sbjct: 262 RMTVSLVTFDVGQVVAETVSALLPLARQKNLPLTVLMDARFPSSLRGDPFHLKQILTNLL 321

Query: 377 SNAVKFTAIGGRV-HVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT  G  V  +T   TS          + D G GI+E E   +  SF QG  ++ 
Sbjct: 322 GNAIKFTESGEVVLTITPILTSDERQLSVRFEVSDTGIGISEEEKNRIFESFSQGDDSVT 381

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               G GLGL I + ++    G+    S   +G      +P
Sbjct: 382 KRYGGTGLGLAITRQLVDLEKGKLGFLSHAGKGSIFWCTIP 422


>gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 617

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  Y       S ++ ++ Q + + L  ++E    L +E+R    E N   + FLA++S 
Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISQ 366

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPLN I    ++++L      + +  ++YI  I ++   L+ LIN +LD +++++G 
Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +L+    +++++V E  + +   A+ KNI I    D     +  D   + +++LNLLSN
Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG ++VTV         IS+KD G GI E +I  +   F Q    ++  ++G 
Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G+GL + +S +  H G   I+S++ +G E I  +P   V   + ++N+
Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKENLEKENN 593


>gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
 gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
          Length = 803

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPL+A++G+SE++  E       E   + +  I  S +HLL LIN++
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAGR  L+     ++ ++ +     Q    +K        +  L ++  D+  +
Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQSKL 406

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425
           RQ ++NL+ NA KF+   G + + V      G      S+ D G G+ + +I  +   F 
Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   +      G GLGL I ++ +   GG   + S    G      LP
Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513


>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 692

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 21/303 (6%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----- 243
           +   L   ++        L + N ++     E+      L          R+R E     
Sbjct: 244 MGEQLMREVAAHRVTQEELARLNAELEERVRERTVRYKLLNQKLRAEIGERQRIEVELQA 303

Query: 244 ------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                     AKS FLA+ SHELRTP++ I+  ++++    +G       +E    I   
Sbjct: 304 AQARAEAAARAKSDFLAAASHELRTPMHGIISMTDLLLESDLGA----EQRELAAIIGYC 359

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ +L+LIN ILD+S+IEAGR EL      L  ++   + M   + + K++ +   IDP 
Sbjct: 360 GETMLSLINNILDISKIEAGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPE 419

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412
           +   +  D   + QV+ NL+ N++KFT   G++ + V   +  G        + D G G+
Sbjct: 420 VPAQLEGDPVRLAQVLTNLVGNSLKFTPR-GQIAIRVHPAAQGGDDLRLRFEVVDTGIGM 478

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A      +  SF Q   +      G GLGL I++ ++   GGQ  + S+L +G     +L
Sbjct: 479 APETTGRLFQSFFQADTSTTRKYGGTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVL 538

Query: 473 PNT 475
           P  
Sbjct: 539 PLK 541


>gi|90421196|ref|ZP_01229097.1| two-component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334573|gb|EAS48356.1| two-component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1127

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 18/360 (5%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           L                       A          L  +   S   +V+A     ++   
Sbjct: 560 LAAFADSARGHYLAIFLTLIGFSAAALSLIYLQATLTRSADPSTAAMVLAQVFVILI--- 616

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRA 242
                   +     S+   + +   +  ++    Q       I    +  +     +++A
Sbjct: 617 --------IFIGIASWVFVLAHESRRVALEETRHQTGLLTREIEAHRITDAELQRAKEKA 668

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +LAK+RF+  MSHELRTPLN++LGF+++++ +T  P   E  +E +  I RSG+HL 
Sbjct: 669 EAASLAKTRFVVGMSHELRTPLNSLLGFAQILDKDTAIP---EKRREGVKVIRRSGEHLA 725

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            LI+ +LD+SRIEAG+ E+      L  ++ + + M +L+A    I    +++ +L   V
Sbjct: 726 GLIDGLLDISRIEAGKLEIYRDEFGLGPLLSQIVEMFRLQAGNAGIGFVYRVEGALPDIV 785

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D K  RQ+++NLLSNA+KFT   G+V +TV +   +    +I D GPGIAE  +  V 
Sbjct: 786 RGDAKRTRQILINLLSNAIKFTRE-GQVTLTVRYR-SQIAEFAISDTGPGIAEEHVERVF 843

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F +          G+GLGL I + +    GG   + S L  G      L    V+  +
Sbjct: 844 EPFERIEDGAARPVPGMGLGLTITKLLAEILGGDVRLASTLGVGSTFTVRLMLATVVAPV 903


>gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1172

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 134/290 (46%), Gaps = 3/290 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I       ++ D + + 
Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ + A  GG   + S   +G     +LP   V  
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723


>gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
 gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
          Length = 1838

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 141/347 (40%), Gaps = 24/347 (6%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             + +++   F   +  FL      + +    I +    +  L      A          L
Sbjct: 1024 VIELASFEMFSATHLAFLEQLTESIGIVLNTIQATMRTETLLTQSQGMAQ-ELQSQQEEL 1082

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHEL 260
             ++N ++        D   E+E      +  R+  EE    LA     KS FLA+MSHEL
Sbjct: 1083 RQTNEELEEKARLLADQNREVEHKNREVETARQALEEKAAQLALTSKYKSEFLANMSHEL 1142

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN++L  +  +       L+ E    Y   I  SG  LLNLIN+ILDLS+IE+G   
Sbjct: 1143 RTPLNSLLLLANQLRDNPERNLS-EQQVAYARTIFASGNDLLNLINDILDLSKIESGTVT 1201

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
               + + L  +           A +K +      D  L  S+ +DEK + Q++ NLLSNA
Sbjct: 1202 ADTADVPLRAVRESVESTFTHMAADKGVAFALDFDARLPGSLVSDEKRLLQILKNLLSNA 1261

Query: 380  VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426
             KFT   G V +TV   +                    + D G GIA  +   +  +F Q
Sbjct: 1262 FKFTER-GEVRLTVTPATSGWSSDHPALSRAPGVIAFRVSDTGIGIAPDKQRVIFEAFQQ 1320

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                      G GLGL I++ +    GG+  ++S    G      LP
Sbjct: 1321 ADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGTGSTFTLYLP 1367


>gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 656

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +      +  AE    AK+ FL+ MSHE+RTPLN I+G + +++L+       
Sbjct: 258 ITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPLNGIIGIANLLKLKHTM---- 313

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S  HLL LIN+ILDL++IE+ + EL  + +++ ++VR      +  A+
Sbjct: 314 -DQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAEVNIFELVRNIKNQFKSLAE 372

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
            K I +   ID  +   + AD   + Q++ NL+SNA+KFT   G V +T+   +      
Sbjct: 373 AKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFT-ESGAVTITLSLVALTANKA 431

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             + S+KD G GI E    T+  SF Q    +     G GLGL I Q ++  H G+ L++
Sbjct: 432 NVHFSVKDTGMGIPEELHETIFESFKQVQQDVHRKHTGTGLGLAITQKLVELHDGRILLK 491

Query: 460 SKLREGVEVIAIL 472
           S   +G E    L
Sbjct: 492 STAGQGTEFYFEL 504


>gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1023

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 130/278 (46%), Gaps = 34/278 (12%)

Query: 225 IAELEVAKSLSDETRKRAEEEN--------------LAKSRFLASMSHELRTPLNAILGF 270
           I + +  +      +   +  N               AKS FLA MSHE+RTP+NA+LG 
Sbjct: 302 ITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEIRTPMNAMLGM 361

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E++     G   +   +++I  I   G  LL +IN+ILD S+IE+   EL  S   L +
Sbjct: 362 AELL----DGTELSPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLELEISRFDLYE 417

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPS-----LSSVWADEKGMRQVILNLLSNAVKFTAI 385
            + + + +   +A+EK + +   ++P       +    D   ++Q++ NL+SN++KFT  
Sbjct: 418 CIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLVSNSIKFTQE 477

Query: 386 GG-RVHVTVGWTSGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           G   + V VG  +   +             + D G GIAE +IP +   F Q   ++   
Sbjct: 478 GEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQVDASMTRR 537

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I++ ++   GG+  + SK+  G      +
Sbjct: 538 YGGTGLGLAISKQLVELMGGEMGMVSKVGSGSTFHFCI 575


>gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 934

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 3/290 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 198 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 257

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 258 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 316

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  ++     + Q  A EK +     I     ++ + D + + 
Sbjct: 317 ISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLAFTVDIQTGAPTMLFTDRQRLE 376

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 377 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 435

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ + A  GG   + S   +G     +LP   V  
Sbjct: 436 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVKQ 485


>gi|255941286|ref|XP_002561412.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586035|emb|CAP93776.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1025

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 15/281 (5%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +I+ L  +   +   R+ AE  N +KS FLA+MSHE+RTP+N I+G S 
Sbjct: 482 EMDDLKQKINKMISSLRDSIQRNTAAREAAELANRSKSDFLANMSHEIRTPMNGIIGLSS 541

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +              ++ +  +H     LL +I++ILD+S+IEA    + ++  SL   V
Sbjct: 542 LALDTD---DLQAPVRDTLNMVHNLAISLLTIIDDILDISKIEANHMIIEKTPFSLGATV 598

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  L +   EK + +   +D  +   +  D   +RQV+LNL+ NA+KFT   G + V
Sbjct: 599 FSVLKALSVETNEKALGLVYTVDGEVPDYLIGDAYRLRQVMLNLVGNAIKFT-DHGEIRV 657

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           TV                 S+ D G GI E +I  +   F Q   ++     G GLGL I
Sbjct: 658 TVKHAQDDKCASDETAFQFSVSDPGIGIDESKIGLIFDKFQQADGSMTRRFGGTGLGLAI 717

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           ++ +++  GG   + S + EG          RV    P  +
Sbjct: 718 SKRLVSLMGGDIWVTSNVGEGSTFSFT---CRVKLAQPPPS 755


>gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 866

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 159/390 (40%), Gaps = 28/390 (7%)

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCW----TLLTLVEPGTWTPEYL----TIYKSATLLIA 148
             +       R   ++  +  GL        + L                + ++A LL++
Sbjct: 347 RTRDLAESEARTRAIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMS 406

Query: 149 LSISALSNFMLPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYH 206
              +A         ++    P++           +     +++A     A          
Sbjct: 407 AEDAAGHAEPFGLHLWDGRSPLLNGTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARR 466

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           LF   V+ +S Q   +          S   + +  AE  N AKS FLA MSHELRTPLN 
Sbjct: 467 LFTGVVRDISDQIRHE----------SDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNG 516

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG ++++    +    +   + Y   I  S + LL +IN+ILDLS+IEAG  +L     
Sbjct: 517 VLGMADLLCDTPL----DAEQRRYTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPF 572

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
               ++     +++  A++K I +   I+ +   +   DE  +RQ++LNL +N VKFT  
Sbjct: 573 DPATLLEGVRTLMEGPARDKAIALRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEK 632

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + + +   +G      ++D G GI + +  T+   F Q S +      G GLGL I 
Sbjct: 633 -GSLTLRLKAGTGGALRFEVEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSIC 691

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI--LP 473
           + ++   GG+    S    G        LP
Sbjct: 692 RRLVGLMGGRLGFDSTPGVGSLFWFEVDLP 721


>gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1127

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 7/366 (1%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185
            EP    PE      SA L   +  S +       A       + + A     I++ +  
Sbjct: 624 FEPSPIGPEGPPCALSAHLGRQVICSDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 683

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K  FLA++SHELRTPLNAILG+S +++ +   P         +  I RS +    +I
Sbjct: 744 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 800

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKIALELDAPCDGELWFFGD 860

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT  GG V VT+         + ++D G GIA   +P V   F
Sbjct: 861 AGRLQQVLTNLLSNALKFTPAGGTVRVTMD-VEDERLRLCVQDTGIGIAADFLPHVFDRF 919

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPE 483
            Q          G+GLGL I++ ++  HGG     S    +G     +LP    ++ +  
Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRP 979

Query: 484 DNHEST 489
            + ++T
Sbjct: 980 ASADTT 985


>gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1049

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA MSHE+RTP+N+ILG ++++    +    +   +  +  I R+G  L+ +IN+I
Sbjct: 548 KSAFLAVMSHEIRTPMNSILGMTDLLMEHAL----DAEQRHALQAIARAGDALMIIINDI 603

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LDLS+IEA R EL      L +++     ML LRAQEK +++    +  L    W D+  
Sbjct: 604 LDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQVR 663

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ+++NL+ NA+KFT   G + V +    G     S+ D+G GI   +   +  SF QG
Sbjct: 664 LRQILVNLIGNAIKFTHQ-GSIEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFNQG 722

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             ++     G GLGL I+Q ++   GG   + S+  +G      +P   V
Sbjct: 723 DSSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIPMAPV 772


>gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
 gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
          Length = 715

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKR--------AEEE------NLAKSRFLASMSHE 259
           +   Q+E ++  A+LE   S  +E R          A++       +  KS F+A+MSHE
Sbjct: 1   MREQQSELEEQNAQLEQQTSQLEEQRDALAASRQQLADQAGDLARESRYKSEFVANMSHE 60

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNA+L  + ++       L+ E  + +   I  SG+ LL LIN+ILDLSRIEAG+ 
Sbjct: 61  LRTPLNALLIMARLLSENRPHNLSPEQIQ-WAETIESSGRDLLGLINDILDLSRIEAGKV 119

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++        D+    +    ++A E  +++  ++   +  +  D   + Q++ N LSNA
Sbjct: 120 DVDPEVTQPKDVAARMMRAFAVQASESGLKLVSEVADDVPEITTDVGKLEQILRNFLSNA 179

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KFT   G V ++V  +       S+KD G GIA  +   V  +F Q   +I     G G
Sbjct: 180 LKFTQK-GSVTLSVARSGAETVTFSVKDTGIGIAAEQHDAVFEAFRQADGSISRRFGGTG 238

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL I++ +    GG  ++ S   +G   I  LP   +   +PE +
Sbjct: 239 LGLSISRDLAGILGGDVMLESTPGKGSTFILTLPL-HLTAPVPEAD 283


>gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 565

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 168/430 (39%), Gaps = 36/430 (8%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R      +   LV  +  +         W ++   +    L +  +           + 
Sbjct: 20  RRGMAGRLVMTTLVGVLLAYAFGPYALLPWIVVNAGLEGLLLLIKAQF---RPASERRFP 76

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEP---GTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
               L  G +A  + W++   +              +     L+  L  + +S  +L   
Sbjct: 77  MIRRLGPG-MAFSVTWSITACLLWIHGSAGLKFAALMVMFGLLIEGLKYAVVSRALLLAL 135

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
               F  ++ A  T         +  +  ++   +  F+     L ++N + L     + 
Sbjct: 136 APPPFAALIFAAVTSQHWQGW--EYVVLAVVMVGVLSFSMDAVRLLRANAQALEEAQAEA 193

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                                  + +KS F+A MSHELRTP+N +LG +  +    +   
Sbjct: 194 QEA--------------------SRSKSAFVAMMSHELRTPMNGVLGLAHALSTTRLDV- 232

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EY+  I +SG  L+ ++N+ILDLS+IEAG+ EL  +   +  +  +  ++    
Sbjct: 233 ---RQAEYVDMIIQSGDGLMTILNDILDLSKIEAGKLELEIAPFDIRALAGQIRLLWSET 289

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+ K +E+  ++DP+    +  D   +RQ+++NL+SNA+KFT   GRV + V   +    
Sbjct: 290 ARGKGVELALEVDPATPAWLLGDAARVRQILMNLVSNALKFTLA-GRVVIGVAP-AEGEI 347

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +S+ D G G+   +   +   F QG  +      G GLGL I + +    GG   + S+
Sbjct: 348 VLSVTDTGVGLTAEQRARLFAPFAQGDRSTARRFGGTGLGLAICRHLAELMGGAIGVESE 407

Query: 462 LREGVEVIAI 471
              G      
Sbjct: 408 PGVGSTFTVR 417


>gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 533

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + +    ++ +
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QVI N ++NA+KFT   G++ +     +       
Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  ++  V   F +      S  +G GLGL I +SI+ + GG     S++ 
Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGAESEIG 518

Query: 464 EGVEVIAILPNT 475
            G       P  
Sbjct: 519 VGSRFWFTHPLR 530


>gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 533

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + +    ++ +
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QVI N ++NA+KFT   G++ +     +       
Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  ++  V   F +      S  +G GLGL I +SI+ + GG     S++ 
Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGAESEIG 518

Query: 464 EGVEVIAILPNT 475
            G       P  
Sbjct: 519 VGSRFWFTHPLR 530


>gi|88860218|ref|ZP_01134856.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88817416|gb|EAR27233.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 915

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 123/267 (46%), Gaps = 13/267 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L A +E   +   +   +AE  +  KS FLA MSHELRTP+NAI+G  E++ 
Sbjct: 367 QLKKLNLELEARVEERTAELTQAITQAELASKIKSEFLAMMSHELRTPMNAIIGSLELLS 426

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           L       +E     I     S  +L+N++N+ILD+++IE+G+ E+         ++   
Sbjct: 427 LSINAHEESE----LINTASMSAHNLVNILNDILDINKIESGKLEIETHDFDHQQLIYNI 482

Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR----VH 390
           +   +  A  + + +    D      V  DE  +RQ+I+N++SNAVKFTA   +    V 
Sbjct: 483 VKTFESTASNQGVTLIIHEDTKMPPIVSGDEIRVRQIIMNIISNAVKFTAGNDKEIKIVT 542

Query: 391 VTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             + W    G    I     D G GI +     + T F Q   +      G GLGL I+ 
Sbjct: 543 FCIQWRQIGGCLFEIIYEIIDTGIGINQETQKRLFTPFIQAEKSTTRKFGGTGLGLAISG 602

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            +    GG   ++S +  G +    LP
Sbjct: 603 KLADMMGGSIELKSHVGIGSKFTIKLP 629


>gi|332707304|ref|ZP_08427357.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354038|gb|EGJ33525.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 876

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 149/299 (49%), Gaps = 30/299 (10%)

Query: 215 LSCQAEKDDLIAELEVAKSLSD---ETR--------KRAEEENLAKSRFLASMSHELRTP 263
           L   A +  + A+L  A +L +   E R        + A++ N AKS+FLA+MSHELRTP
Sbjct: 361 LVYLAGRRRIEAQLRKANALLEIRVEERTAEFKAAKEAADQANHAKSQFLANMSHELRTP 420

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG++++++     P      K+ I  I++ G +LL+LIN+ILDLS+IEA + EL  
Sbjct: 421 LNGVLGYAQILQR---DPQITAQQKDQINLIYQCGNYLLHLINDILDLSKIEARKMELFP 477

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
             + L   + E + M +++AQ+K I         L   + AD K +RQV++NLL NA+KF
Sbjct: 478 REVHLPSFLMEVVEMCRVKAQQKEIAFIYLPSSHLPDGILADAKRLRQVLINLLGNAIKF 537

Query: 383 TAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           T  GG V   V   S                  IKD G G+   ++  +   F Q     
Sbjct: 538 TDHGG-VTFKVEVISKHPRLPTLQSPLVRLRFIIKDTGIGMTPEQLEKIFLPFEQVGDVD 596

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNHES 488
              EQG GLGL I+Q+I+   G    + S   +G        LP T  L    + + ++
Sbjct: 597 HR-EQGTGLGLAISQTIIKLMGSAINVESTYGKGSMFSIDLDLPITTALIASKQASTKT 654


>gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1]
 gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator
           receiver and signal transduction histidine kinase
           domains [Aromatoleum aromaticum EbN1]
          Length = 1205

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 202/495 (40%), Gaps = 21/495 (4%)

Query: 7   NKEKDVGLLISPTGDHLGLEY---PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63
           +  +++   +                  + +  +      S      +  L   L A +G
Sbjct: 285 HSFRNMTSSLRQARVQARDADWLKSGLNELNSVMRGEPATSEIADKVLAYLVEYLKAGVG 344

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
             +  +      SL     +    +LG +    +  IG+    R  + +  +        
Sbjct: 345 ALYLLDERAEELSLAASYAFTRRKNLGDRFRLGEGLIGQAARERKPICLANVPADYLPIA 404

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
             L E        L +   A L+ AL I   S        FL      VA+     +S  
Sbjct: 405 SALGESVPKVVLALPLLHGARLIGALEIGTFSEMTDIQLEFLGLAQEAVAIGLSVSLSRQ 464

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILS----CQAEKDDLIAELEVAKSLSDETR 239
            +   L      A          L +SN ++       + +++++ A+    K  +++ R
Sbjct: 465 RMAELLEETQQQAE-ELRVQQEELQQSNEELEERAQMLETQRENIRAKNREIKLAAEDLR 523

Query: 240 KRAEEENL---AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            +A+E       KS+FLA+MSHELRTPLN+++  S ++     G L+ E   E+   IH 
Sbjct: 524 VKAQELERVSAYKSQFLANMSHELRTPLNSLMILSSLLMQNKDGNLS-EKQVEFASTIHS 582

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +G  LL+LIN+ILDLS+IEAGR EL  + I++ D+      + Q +A++K I    +++ 
Sbjct: 583 AGTDLLDLINDILDLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEA 642

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDN 408
            +      D + + Q++ NL+SNA+KFT   G V + V + SG            ++ D 
Sbjct: 643 DVPRTFHGDTQRVHQILKNLVSNALKFT-EHGEVRLCVTFPSGSANPLPVPAIAFAVSDT 701

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +   +  +F Q   +I     G GLGL I+  +     G   + S   +G   
Sbjct: 702 GIGIPADKQQGIFDAFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSESKGSVF 761

Query: 469 IAILPNTRVLNFIPE 483
           +  LP     +  PE
Sbjct: 762 VLYLPLCVESDKAPE 776


>gi|323498876|ref|ZP_08103859.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315988|gb|EGA69016.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 710

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   L+      ++ R +AE+   AK+RFLA+MSHE+RTPLNA++G S+    +     
Sbjct: 213 KLSQTLKERSDNLEQARLQAEQSAEAKARFLANMSHEMRTPLNAVIGLSQ----KEYYKA 268

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  K +   I+ SGQHLL LIN +LDLS+IE G+ +L E      +++     +    
Sbjct: 269 CDEQTKNFASLINSSGQHLLKLINSVLDLSKIEQGKIQLEEERFYCSELIDASRTIFIEM 328

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401
           ++      F     +   + AD+  + QVI NL  NAVKFT   G V V +      +  
Sbjct: 329 SKPDVDVFFSTEIDADYQLCADKTKLLQVINNLSFNAVKFT-SYGYVEVKIAVDPLMKQL 387

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ++I D G G+   ++  V   F Q   +I     G GLGL I QS++   GG+  + S+
Sbjct: 388 VLTINDTGIGMTPEQLDKVFNEFTQADDSITRQYGGTGLGLSICQSLVTLMGGKISVESE 447

Query: 462 LREGVEVIAILPNT 475
            ++G   +  +P  
Sbjct: 448 TQKGTSFVVSMPIK 461


>gi|317485692|ref|ZP_07944563.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923057|gb|EFV44272.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1132

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 15/303 (4%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +L I +   +   + F+ +      +   K L+ + EK     +L+   +   +  
Sbjct: 297 FWTSLLGIEVVLSVLLLIIFWNFQLRRKVEERTKRLAAELEKSAKAEDLQRLNTELQQAM 356

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K A+    AKSRFLA++SHE+RTPL+ I+ F+E+         NN   + +   I     
Sbjct: 357 KAADAATEAKSRFLANISHEIRTPLHGIISFTEL-----AYLKNNPLPRNHQRTILDLSY 411

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL+++N+ LD S+IEAG  +   +   L +++     M    +  + +E    IDPS  
Sbjct: 412 ALLDIVNDTLDFSKIEAGEMDTDTAPFMLDEVILRVCDMTMRGSMARELECLIDIDPSTP 471

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNG 409
            ++  D   ++Q++ NL+ NAVKFT  GGR+H+ V            +       + D G
Sbjct: 472 LALLGDAGRLQQILTNLMGNAVKFTPPGGRIHLQVRHGGNLHLSENQNKAQFLFFVHDTG 531

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA  ++P +   F Q   ++     G GLGL IA+ ++ N GG+  + S++ +G    
Sbjct: 532 VGIAPDQLPQLFQPFKQADSSLTRRHGGTGLGLSIARYMVENMGGEIWVESEVGQGSTFA 591

Query: 470 AIL 472
             +
Sbjct: 592 FSI 594


>gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1424

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 167/421 (39%), Gaps = 31/421 (7%)

Query: 102  EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            +    R  + V ++          L      +   L I     +L  + ++++S F   +
Sbjct: 704  QAARSRRTITVDELPADYVTISSGLGRTAPTSLVVLPITVEEQVLGVIELASVSRFTQIH 763

Query: 162  AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVKIL 215
              FL      + ++   I++    D  L      A                L +SN ++ 
Sbjct: 764  QDFLGQLTETIGVNVNTILANARTDELLGESQRLADELRVRSEELQVRQEELQRSNAELE 823

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAIL 268
                       ++E      ++ R+  E         +  KS FLA+MSHELRTPLN++L
Sbjct: 824  EKATLLATQNRDIEAKNLQIEQARQELEDRAKQLSSASKYKSEFLANMSHELRTPLNSLL 883

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
              ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+ +++   + L
Sbjct: 884  ILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPL 942

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              ++       +    +K +       P   + +  D+  +RQV+ NLLSNAVKFT  GG
Sbjct: 943  RRLLDYVEATFRPMTTQKGLTFAITSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGG 1002

Query: 388  RVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
             V + +   S                  ++D G GI E ++ T+  +F Q          
Sbjct: 1003 -VTLLIEPASDAEVPEPVHRGGPVVAFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYG 1061

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV----LNFIPEDNHESTQYK 492
            G GLGL I + I    GG   + S   +G      LP TR     L   P      +  +
Sbjct: 1062 GTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVTRSDFEDLTAAPRAEESQSDAR 1121

Query: 493  C 493
             
Sbjct: 1122 A 1122


>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 1014

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
 gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
          Length = 1791

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 8/249 (3%)

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA+MSHE+RTP+N ++G    +    +     E   EY   +  S + LL +IN++LD
Sbjct: 1421 EFLANMSHEIRTPMNGVIG----MTDLLLDTDLTEEQLEYAESVRSSAESLLVIINDVLD 1476

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
             S+IEAG+ +L E    L  +++E    +  RA+ K I     +   + S+   D   +R
Sbjct: 1477 FSKIEAGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLLKGDPVRLR 1536

Query: 370  QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQ 426
            Q++ NL  NAVKFT  G  +V V+    +         + D G GIA      +  SF Q
Sbjct: 1537 QILFNLCENAVKFTEAGSVKVAVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQ 1596

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
               +      G GLGL I + +++   G+  + S+  +G      L   +       D+ 
Sbjct: 1597 VDASTTRQYGGTGLGLAITKRLVSLLDGEIGVTSEPGKGSTFWFTLALEKQPQQKAGDSV 1656

Query: 487  ESTQYKCYA 495
              T    ++
Sbjct: 1657 GETPVPAFS 1665


>gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642]
          Length = 1172

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELNIAQAELQARADELQRASKYKS 495

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 555 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ + A  GG   + S   +G     +LP   V  
Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723


>gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1071

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 144/295 (48%), Gaps = 13/295 (4%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L ++L    A A  +F  +   + +        +  KDDL      A  L+    +RAE 
Sbjct: 635 LTVALVRDAAGAPDYFISVVEDIDRRKAIEEQLRLSKDDLERAARQATHLA----RRAEA 690

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            NLAKS FLA+MSHE+RTPLN +LG  ++++   +    +E   EY     RSG  L  L
Sbjct: 691 ANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVL----DEEQLEYADMAIRSGGRLTRL 746

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363
           + +ILDLSRIEA R  LS +   L D+            +EK + +  +  P +  V   
Sbjct: 747 LGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLPLACRAAPDVPGVLVG 806

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPT 419
           DE  +RQ++ NL  NA+KFT  G   V V+   +   GQ     ++ D G GI + +I T
Sbjct: 807 DEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPGQARLLFTVADTGVGIPDDKIDT 866

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           V   F Q   +    +QG GLGL I++ +    GG   I S+  +G  V  +LP 
Sbjct: 867 VGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLTIESEPGQGTTVYLMLPL 921



 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 17/374 (4%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
           +A GL W     + P  W   +  ++ S+ +             L   V  +        
Sbjct: 23  LAFGLQWLFWGAIRPYIWFLFFPAVFFSSQVGGMAGG-------LAATVLSAMLASFFME 75

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
              + +  + + +    +     + F+     L ++     +  A   D  A L  A   
Sbjct: 76  PRFSFLFGNPVSLISVLIFCGMGTLFSLTHSRLARARQVAEAALAASRDANAGLRAANEE 135

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                ++  E +  K+RF A++SHELRTPL  ILG         +    ++  +  +  +
Sbjct: 136 ITRLYEKTRELDALKTRFFANVSHELRTPLTLILGPL----ARRLEACADDAARADLRVM 191

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            R+   L   ++++LD+++++AGR E   +   +  + R      +  A+EK I      
Sbjct: 192 ERNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRIRFTIAA 251

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
              LS+   D + +R+++ NLLSNA KFT  GG V V +    G    +++ DNGPG+  
Sbjct: 252 PERLSAA-VDVEKVRRILQNLLSNAFKFTPDGGAVDVRLE-EDGDWVAMTVADNGPGVPP 309

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                V   F Q          G GLGL IA+     HGG  L+ +    G      LP 
Sbjct: 310 ALRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPR 369

Query: 475 TR----VLNFIPED 484
                 V++  PE+
Sbjct: 370 KAPDGVVVHDAPEE 383


>gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
 gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
          Length = 490

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++  +E    K+ FLA+++HELRTP+N + G ++V+    +G    +  +E +  I R  
Sbjct: 132 KEELKEATGVKNEFLANITHELRTPVNGMKGLADVL----LGTELTQNQRENVNIIRRCC 187

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            ++ N+IN ILD S+I AG+ +L    I + + ++  +     +  EK +++   I  ++
Sbjct: 188 DNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNIGDNV 247

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAE 414
              +  DE  + Q++ NL+SNA+KFT++G  V   +           +  + D+G GI++
Sbjct: 248 PKKILGDELRLEQILSNLISNAIKFTSVGQLVIEVINTDQKEDEVELFFMVIDSGIGISK 307

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++  +  SF Q   +I     G GLGL I++S++   GG   + S++  G      +
Sbjct: 308 EDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSSEIGRGSTFSFSI 365


>gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 614

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 374 EQIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWQDPNIAP--RFLNVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+ ++  Y+ ++  I  I      I   ++  +E+++E    +      V 
Sbjct: 432 RLVNDLLQLSKFDSKDYQFNKEWIHFIRFFSLIIERFEMT-KEQHVEFISNLPDRELYVE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421
            D   + QV+ N++SNA+K++  GG +  +V         Y+S+KD G GI   ++  + 
Sbjct: 491 IDPDKITQVLDNIISNALKYSPEGGHITFSVDVNEEEELLYVSVKDEGVGIPRKDVEKIF 550

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F +   A      G GLGL IA+ ++  H G     S   +G  +   LP
Sbjct: 551 ERFYRVDKARTRRLGGTGLGLAIAKEMVQAHSGDIWADSIEGKGTTITFTLP 602


>gi|117926355|ref|YP_866972.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610111|gb|ABK45566.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 550

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 162/373 (43%), Gaps = 19/373 (5%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQA 178
            W  L  +  G    +         +++   +S L             F  ++       
Sbjct: 58  LWAHLVALFEGLPLEDTRCPAYGDVVIVLREMSGLRAEQGFSPMETCQFVFLLKDALLPL 117

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           +         L             +   + +  +    C  E  +    +E ++++    
Sbjct: 118 LQRRFADHPELFTWA------LIRLNRWVDRLGMITFECYMESRE-RTIMEQSRAMVAL- 169

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
              AE  N  KS FLA+MSHE+RTPL+AI G              N+  K Y+  I+R+G
Sbjct: 170 ---AESSNRTKSMFLAAMSHEIRTPLHAINGL----AELLEREELNQDQKHYVHIIYRAG 222

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILD SR+EAGR EL    + +  +V E + ML  +A++K + +   ++P +
Sbjct: 223 SRLLALINDILDFSRLEAGRIELESLVVEVRPLVHETMEMLSFKAKDKGLALQWTLEPQV 282

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              + +D   + QV++NL+ NA+KFT   G V + +   + +   + ++D G GIAE + 
Sbjct: 283 PQWMMSDPTRLGQVLVNLVGNAIKFT-QSGEVALEIS-VAEQQLCVMVRDTGLGIAEDKQ 340

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q  I I     G GLGL I + I+A  GG   ++S+L EG      LP   V
Sbjct: 341 QIIFEPFSQSDITISRRFGGTGLGLSITKQIVALMGGTISVQSRLGEGSRFYVRLPLKEV 400

Query: 478 LNFIPEDNHESTQ 490
                    ++TQ
Sbjct: 401 AAGDLLAAQQATQ 413


>gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 576

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 30/289 (10%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPL+A++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L   A+ L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVS 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                                  +S+ D G GIA+ ++  +  +F Q   ++    +G G
Sbjct: 469 ILDGDWPVHSVPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           LGL + + +   HGG   + S    G   +  LP        P    E+
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR------PPATEEA 571


>gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
 gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
          Length = 830

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 15/285 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 403 VDGRVYRWNLSPIKVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 462

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 463 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 518

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375
           G++ + +S   L ++V     + +    +K +E+    +  S   V +D+  + Q++ NL
Sbjct: 519 GKFRIQKSEFRLNELVYAIDRIYRPLCNDKGLELVVDSNITSAVLVRSDQVRINQILFNL 578

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 579 LNNAIKFTHQ-GSIRVVLELIEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFVQAESTTT 637

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               G GLGL I  S++    GQ  + S+   G      LP   V
Sbjct: 638 REYGGSGLGLAIVHSLVEMLSGQLHVSSEYGRGTRFEIQLPIELV 682


>gi|160936746|ref|ZP_02084113.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440537|gb|EDP18282.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1070

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 9/259 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E   +  +L   K+   +  + A+  N AKS FL+ MSH+LRTPLNAI G + +I+   
Sbjct: 530 TELRVMQKKLTEQKTALQDALEAAKHANRAKSDFLSRMSHDLRTPLNAIQGMARIIKSHV 589

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   E   +    I  S   L++LINE+LD S++E+G+  L+E  ++L ++V+  + M
Sbjct: 590 YDP---ERVLDSTDKIMLSNDLLISLINEVLDTSKVESGQMLLAEEEVNLAELVQGVVNM 646

Query: 339 LQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q +  EKN+         +  +V +D + ++Q++LNLLSNAVK+T  GG + + +    
Sbjct: 647 VQPQLGEKNLRFKTYANRITHETVVSDLQRLQQLLLNLLSNAVKYTPEGGSITLEINEKP 706

Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       + D G G+    +  V   F +   A   A QG GLG+ I + I    
Sbjct: 707 SEQTDMAYYEFVVSDTGIGMKPEFLARVFEPFERADDAKIQAVQGTGLGMSICKKIAELM 766

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GG   + S   +G      
Sbjct: 767 GGTIEVESTYGKGSRFTVS 785


>gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
 gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
          Length = 720

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 10/349 (2%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
               +     +  +L++   +     +  + +        +     ++      +   A 
Sbjct: 152 ANLYHDLARTALVILVSQGANTFLVALFTFYILSRLVTRHLTAIAHSVSDYDFHEPPSAF 211

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +L             +    V   +    +       E   ++  E R+ AE  N AK  
Sbjct: 212 VLQRKAPREPDELDRV----VSAFNAMGMRLHRAYLDEREAAVEREARRMAEAANRAKGE 267

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHELRTPLN ILG+++++  +    L     ++ +  I +SG+HLL LI+E LD 
Sbjct: 268 FLANLSHELRTPLNGILGYAQILGRDDSLSL---RQRDGVAVIQQSGEHLLTLIDETLDF 324

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           +++EAG+  +    + L  +V     ++ ++A+++ +     +       V ADE  +RQ
Sbjct: 325 AKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLAFACSVAADAPCGVRADEHRLRQ 384

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+LNLLSNAVKFT   G V + +           + D G GI      T+   F Q   A
Sbjct: 385 VLLNLLSNAVKFTDR-GEVRLFIRRGESGAVRFEVHDTGIGICAEYHETIFMPFEQAGGA 443

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            + A  G GLGL I++  +   GG+  + S +  G      LP   V  
Sbjct: 444 ERRA-GGTGLGLAISRQFVRAMGGEVNVDSVVGRGSVFWFELPPALVEP 491


>gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 590

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +       +  F++S+SHELRTPL +I G++E +    M   + E    ++  I +  + 
Sbjct: 356 KLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLDGAM--HDPEHAAAFLRIILQESEQ 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N++LDLSRIE+G+ +   +   L  I+++   ++    ++K I++  +    L  
Sbjct: 414 LTALVNDVLDLSRIESGKIDYRFAPTDLRSILQKSSELVLPAIEKKKIKLDMQFQEELPL 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           V+AD   +   + NLL NAVK+     GR+ VT  + S     + + DNG GI   ++  
Sbjct: 474 VYADAAYLEIAVRNLLDNAVKYVEDTVGRIRVTA-YKSESNVILEVHDNGLGIHPSDLDR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +   F +   A      G GLGL I + I+  H G   + S+L +G      LP + V
Sbjct: 533 IFERFYRADKARSRQSGGTGLGLAIVKHIVLAHKGTIEVHSRLNQGSVFRMSLPVSTV 590


>gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 630

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E + +AE  + AKS F+A++SH+LRTP+N ILG +++  +        
Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I D+  S   LL L+ +ILD +R+E G+ EL  S  +L  +V   +     + Q
Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K I+I    D SL  S+ ++   +R++ LNL+ NAVKFT   G++ VTV     +    
Sbjct: 350 QKQIKINIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI + ++ T+   F + +    S  +G+GLGL I + ++ N GG+  + S 
Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 468

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG      +P        P +  E+
Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495


>gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1275

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 152/257 (59%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      ++ AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1017 RDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMATERFGPI 1076

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N  Y EY  DI RSG+H+L+++N++LD+S+IEAG+ ++   A+ L + V E + ++Q +
Sbjct: 1077 GNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQPQ 1136

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  S+  + AD + ++Q++LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1137 ANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSVS 1196

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + I+D G G+   E+   +  F Q + + K     G GLGLP+ ++++  +   F I S 
Sbjct: 1197 LRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITST 1256

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1257 PNEGTLVEITFPSQRVL 1273


>gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 2037

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 174/426 (40%), Gaps = 17/426 (3%)

Query: 77   LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
            L     Y   +S+ ++       +G+  V +  +L+  +          L E        
Sbjct: 1173 LFAAYAYGNEVSVSREFALGQGLVGQCAVEKERILLTNVPSNYIKISSGLGEATPVNLIV 1232

Query: 137  LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
            L +     +   + +++   F   +  FLS     + +    I +    +  L    + A
Sbjct: 1233 LPVLFEQEIKAVIELASFDTFSQTHLDFLSQLTESIGIVLNTIEANSRTEDLLEQSQSLA 1292

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                      L      ++  + E ++   E+E A+   +E  ++ +  +  KS FLA+M
Sbjct: 1293 -DELRRTNEELQDKAHLLVKQKDEVEEKNKEVEEARRSLEEKAEQLQLTSKYKSEFLANM 1351

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  ++ +     G L NE    Y   IH  G  L+ LIN+ILDLS+IE+
Sbjct: 1352 SHELRTPLNSLLILAQQLYENHDGNL-NEKQVRYAKTIHSCGDDLIQLINDILDLSKIES 1410

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G        +   ++V       +  ++ K++    ++D  L   +  D + + Q++ NL
Sbjct: 1411 GYISTDFIKVRFNEVVSFVETTFKHISESKSLRFRIEMDEQLPQSLETDVQRLNQILKNL 1470

Query: 376  LSNAVKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGIAEGEIPTVLT 422
            LSNA KFT   G V + +               ++ R     I+D G GI++ +   +  
Sbjct: 1471 LSNAFKFTEK-GEVKLRIYEAKRNWRLMNGSLDSADRVVAFEIRDTGIGISKDKQNIIFE 1529

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +F Q   +      G GLGL I++ +    GG   + S++  G      LP       I 
Sbjct: 1530 AFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIELESEVGRGSIFTLFLPLQYNPAAIK 1589

Query: 483  EDNHES 488
             +   S
Sbjct: 1590 REKQSS 1595


>gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
          Length = 616

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 20/355 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201
            L +    +AL  F +  +  +    ++  L T  I++  +L     G+++      FF 
Sbjct: 15  VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I   L KS +++     +   L  +     +         E+ N  KS  +A++SHELR
Sbjct: 75  LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+G S ++    +     E  +EY+  I+ S   L ++ ++I+DL +I++ R EL
Sbjct: 128 TPLNGIIGLSRILLEGEL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
               I    ++ +      L A++  I+        L + ++ D   + Q++ NL+SNAV
Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG ++++V          S+KD G GI + E   V   F Q   + +   QG G+
Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GL I++ I    GG   + S++ +G      +         P +  +S +   +A
Sbjct: 304 GLAISKRIAKLMGGDLTLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352


>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
 gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
          Length = 1012

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 146/325 (44%), Gaps = 11/325 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-LSCQ 218
             A  LS     ++   Q + S   LD  L       ++   +    L  +         
Sbjct: 188 RMAHRLSAPVERISALLQRMSSNAALDERLQVQGNDEIARLAHGLNTLIDTLQARDRELN 247

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +  L   +E            A++ + AKS FLA MSHE+RTP+NA++G + +     
Sbjct: 248 DYRQHLEELVEQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTE 307

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++Y+  I  S Q LL +IN+ILD S+IEAG+  L +   +L D++     +
Sbjct: 308 LSP----QQRDYLRKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNI 363

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           + ++A EK +++   IDP++   +  D   + Q+++NL +NAVKFT   G V V      
Sbjct: 364 VTVKAAEKGLDVLLAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTER-GEVVVDCRLID 422

Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S+ D G GI+  +   +  SF Q   +I     G GLGL I++ ++    
Sbjct: 423 KTEDCVRVRFSVTDTGIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIME 482

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
           G   + S+  EG     ++P   V 
Sbjct: 483 GSLEVASEPGEGSTFSFVIPFGTVA 507


>gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  ++   + ++ AE  + AKS FLA+MSHE+RTPL+ +LG +E+  +  + P   
Sbjct: 450 MTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTELAMMNELTP--- 506

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++     SG+ LL +IN++LDLS+IEAGR  L +   SL ++    I  L + A+
Sbjct: 507 -EVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAVSAK 565

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
            K + IF  +D     S+  D   +RQ++ NL+ NA+KFT   G V V++   +      
Sbjct: 566 AKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTER-GTVTVSMTADAVDAPAG 624

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
              +   +KD G GI E  +  +  SF QG  +  +   G GLGL I++ ++   GG+  
Sbjct: 625 KITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGTGLGLTISKELVEMMGGRIW 684

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             S++  G      +        +     
Sbjct: 685 AESRMGHGSAFHFTVELALADEELDTAEE 713


>gi|302768056|ref|XP_002967448.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
 gi|300165439|gb|EFJ32047.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
          Length = 628

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +  A   + AKS FLA+MSHE+RTPLN I+  +E+     +    +   +EY+  +  S
Sbjct: 2   AKDVAVAADKAKSEFLANMSHEIRTPLNGIINCTEL----CLDTQTSTEQQEYLELVRFS 57

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            +HLL +I +ILD S+IEAG+ E+ +   SL D +   + +L  RA +KN+E+    D  
Sbjct: 58  AKHLLRIITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARAHKKNLELAWSADAD 117

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGI 412
           +   +  D   + QV +NL+ N +KFT   G V V     +          S+ D G GI
Sbjct: 118 VPDQIVGDPGRLFQVFVNLIGNGIKFT-EDGEVVVLAKLQNKTKETVELLFSVNDTGVGI 176

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + +   +  +F Q   +      G GLGL I+  + A  GG+  + S+  +G      
Sbjct: 177 PKNKQSLLFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGRMWVESE-GQGSTFYFT 234


>gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
 gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
          Length = 1131

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +F        ++    +         I +L++        R +AEE N  KS FLA+MSH
Sbjct: 863  WFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTN-ELIRLRNKAEEANRLKSAFLANMSH 921

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTPLNAI+GFS +I +        +   EY+  I  + + LL L+N+ILDLS+IEAG+
Sbjct: 922  EIRTPLNAIVGFSNLIAM----AEEPDEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQ 977

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             + + SA+ L +I      + + R ++  +++   +      + +++  + QV+ N LSN
Sbjct: 978  MDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLSNFLSN 1036

Query: 379  AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            A K+T+  G + +      G      + D G G+AE  IP V   F +      S  QG 
Sbjct: 1037 ACKYTSE-GSITMGYERI-GAILRFYVADTGKGLAEENIPHVFERFAKFD----SFVQGT 1090

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I +SI+ +  G+  + S+L +G      +P   V  
Sbjct: 1091 GLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIPYNPVNE 1131


>gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
 gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
          Length = 1041

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +F        ++    +         I +L++        R +AEE N  KS FLA+MSH
Sbjct: 773  WFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTN-ELIRLRNKAEEANRLKSAFLANMSH 831

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            E+RTPLNAI+GFS +I +        +   EY+  I  + + LL L+N+ILDLS+IEAG+
Sbjct: 832  EIRTPLNAIVGFSNLIAM----AEEPDEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQ 887

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             + + SA+ L +I      + + R ++  +++   +      + +++  + QV+ N LSN
Sbjct: 888  MDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLSNFLSN 946

Query: 379  AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            A K+T+  G + +      G      + D G G+AE  IP V   F +      S  QG 
Sbjct: 947  ACKYTSE-GSITMGYERI-GAILRFYVADTGKGLAEENIPHVFERFAKFD----SFVQGT 1000

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I +SI+ +  G+  + S+L +G      +P   V  
Sbjct: 1001 GLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIPYNPVNE 1041


>gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 770

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHR 296
            RK+ E   + K  F+++++HELRTPL ++LG   +++        +++     +    R
Sbjct: 512 ARKQME---VMKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQKASTLLDMAQR 568

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S   L +L+N+ILDL +I AG+ E     +   D+V++ +   ++ A+E +++    +  
Sbjct: 569 SCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEEHDVQFVLDLKA 628

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     Q ++NLLSNA K++  G  V +           IS+ DNGPGI E  
Sbjct: 629 DDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISVADNGPGIPEEF 688

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            P +   F Q   +      G GLGL I ++++    G+    +K+ EG     +LP   
Sbjct: 689 QPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDTKVGEGTVFHILLPIVD 748

Query: 477 VLNFIPEDNHESTQY 491
            +   P  + E+T +
Sbjct: 749 AVAVDPLVD-ETTDF 762


>gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 588

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     +S F+A++SHEL+TPL +I GF E ++   +   + ET   ++  I    +
Sbjct: 357 RKLE---KMRSEFVANVSHELKTPLTSISGFIETLKSGAI--EDEETKMRFLDIIDIETE 411

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE     L+   I   + +++ I M+   AQ K+I +  +++ +L 
Sbjct: 412 RLARLINDILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLP 471

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  ++   +Q+ +NL+ NA+K+T+ GGRV ++  +        S+KD G GI + +IP 
Sbjct: 472 ILIGNQDWFKQMFINLIDNALKYTSEGGRVQISA-YKKYNHVVFSVKDCGVGIPKKDIPR 530

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   A      G GLGL I + I+ +  G+  + S++ +G E I I+P
Sbjct: 531 LFERFYRVDKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVP 584


>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 877

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E ++RAE  + AK  F++ +SHE+RTP+NA++G SE++         +
Sbjct: 373 ITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMNAVVGLSEMLLDSC----ED 428

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  IH++   L  ++ +ILDL+ +EAG+  L ES+ S+ D+      ++   A+
Sbjct: 429 PEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAEAK 488

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
            K +E   K++   S     D+  +RQ++ NLLSNA+KFT  G    V+   ++   G  
Sbjct: 489 RKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTPSGS---VSARISASEGGVL 545

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI E ++  +   F +G   +     G GLGL + + +++  GG   +RS+ 
Sbjct: 546 FEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRSRR 605

Query: 463 REGVEVIAILPNTR 476
            EG      LP  R
Sbjct: 606 GEGSCFSIWLPLRR 619


>gi|325265248|ref|ZP_08131973.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324029427|gb|EGB90717.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 852

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 10/265 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               +      +  +  R+ A E + AKS FLA+MSH++RTP+NAI+G + +    T   
Sbjct: 318 LRYFSMTRCQLNELEMARQVALEASKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 374

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  +  +  I  SG+HLL LIN++LD+S+IE+G+  L+   ISL ++V   + ++Q 
Sbjct: 375 DDREQLQNCLKKITLSGKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQP 434

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
           +   K   +   ++  L+  VW D   + QV+LNLLSNA K+T  GG + +++       
Sbjct: 435 QVNAKKQTLDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTQEGGSIRLSLFEEKSLK 494

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +I++KDNG G++   +  +  S+ +   A     +G GLG+ I + I+    G
Sbjct: 495 GENYVRIHINVKDNGIGMSPDFVKKIYDSYSRADGARIHKTEGAGLGMAITKYIVDAMEG 554

Query: 455 QFLIRSKLREGVEVIAILPNTRVLN 479
              ++S+  +G E    L   +   
Sbjct: 555 TIDVQSEPDKGTEFHITLDLKKAAE 579


>gi|303317536|ref|XP_003068770.1| Histidine Kinase A (phosphoacceptor) domain containing protein
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240108451|gb|EER26625.1| Histidine Kinase A (phosphoacceptor) domain containing protein
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 2340

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E R      EE  
Sbjct: 1819 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1878

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1879 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1934

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L   + E +  L+   +++ +E  + +D       V  D
Sbjct: 1935 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1994

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V           I +     D G GI+   +  +
Sbjct: 1995 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2053

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461
               F Q   +   +  G GLGL I ++I+    GG+  +RS+
Sbjct: 2054 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2095


>gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1137

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S   +     E+  + A+L+++       R +AE  N  K  FLA++SHELRTPL
Sbjct: 705 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHANRVKDEFLATLSHELRTPL 764

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+S +++ +   P         +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 765 NAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAE 821

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +  +VR  + ++Q  A  + I +            + D   ++QV+ NLLSNA+KFT
Sbjct: 822 HFDIAGLVRSVLELMQPTALARKIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 881

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +         + ++D G GIA   +P V   F Q          G+GLGL 
Sbjct: 882 PAGGTVRVAMD-VEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 940

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
           I++ ++  HGG     S    +G     +LP    ++ +   + ++T
Sbjct: 941 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRPASADTT 987


>gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1420

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 7/313 (2%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +   L+    +    L+   A +    +S      +      + +L+ +   +    E
Sbjct: 945  AALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRE 1004

Query: 228  LEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            LE A+  + + + ++ AE  N AK +FLA++SHELRTPL+ +L  ++++     G +++ 
Sbjct: 1005 LERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDA 1061

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              K     I RS +  + LI+++LD+SRI  G+  +    + L  +V+  +  +  +A+ 
Sbjct: 1062 KIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAER 1121

Query: 346  KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            K+I     +D SL  V  D   ++Q++ NLL+NA+KF+A G RV V +         + +
Sbjct: 1122 KSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERME-GSARLQV 1180

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
             D G GI    +  +   F Q   +      G+GLGL I + ++  HGG     S    +
Sbjct: 1181 SDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQ 1240

Query: 465  GVEVIAILPNTRV 477
            G     ILP   V
Sbjct: 1241 GAIFTVILPLMPV 1253


>gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 832

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/413 (23%), Positives = 158/413 (38%), Gaps = 33/413 (7%)

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT----------LLTLVEPG 130
           A+             +                      L W           +L+ +   
Sbjct: 281 AIGEVFWLTATDWKRTFYISPAYERLWGRTTRSLYEAPLSWLESVHPEDRDPVLSYLTSL 340

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
              P    ++    LL                   +     VA   + I    +    L 
Sbjct: 341 AGRPVVPGVFPEYRLLRPDGTVRWVQARHFPVADDTGVVYRVAGIVEDITDRVLARKELE 400

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G+           T  L + N +++   AE+ +  A + VAK  ++         + AKS
Sbjct: 401 GINERLEDMVRDRTRTLNRMNEELIREVAERREAEAAMAVAKEAAE-------AASQAKS 453

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+N ILG ++++     G   +   + ++ DI  S   LL LIN+ILD
Sbjct: 454 EFLANMSHEIRTPMNGILGMAQIL----GGTSLDPAQQGFLKDIEDSATSLLTLINDILD 509

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
            S+IEA R EL+     L  ++      L + A+E  +E+   + P +  V   D   +R
Sbjct: 510 FSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLELHVDVAPDVPDVLLGDADRLR 569

Query: 370 QVILNLLSNAVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           QV++NL+ NA+KFT  GG V             + G  + +    S+ D G GI   +  
Sbjct: 570 QVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDATQELVFSVSDTGIGIRPEDAD 629

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +  +F Q   +      G GLGL I + ++   GG   + S+  +G      
Sbjct: 630 RIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGLESEPGQGSVFTFT 682


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 11/259 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E       L  ++    + +  A+  N AK  FLA+MSHE+RTPLNAI+GF+++     
Sbjct: 195 SELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMSHEIRTPLNAIIGFTKLCLHSE 254

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +        ++Y+  +  +   L +LIN++LDLS+IEAG+ E+     +L  ++     +
Sbjct: 255 LTL----KQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERVPFNLNQVLSNVRHV 310

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +     ++ +     ++PS+ + V  D   ++QV++NL+ NA+KFT   G V VTV    
Sbjct: 311 MWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIKFTDK-GEVSVTVSRKK 369

Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            R +        + D G G+ + ++  + + + Q   +      G GLGL I+Q ++   
Sbjct: 370 SRARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQKLVNLM 429

Query: 453 GGQFLIRSKLREGVEVIAI 471
            G+  I S L +G E    
Sbjct: 430 KGRIHINSALGQGTECEFS 448


>gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 423

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    E  +        + +E +  K+ F+A+MSHE+RTPLNAI+GF+ ++   T    N
Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+++   LL LIN+ILDLS+IE+GR   + S + L DI +E  ++  L+ 
Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 ++  +      +W D   + QV+LNLLSNA+KFT+  G + +           +
Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E ++ +V   F +         QG GLGLPI + I+   GG+  +RS+L 
Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +G      LP       + E +  S   +C
Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420


>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 1014

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 905

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 10/284 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                +  +  L + +        E R  AE  N AKS FLA+MSHE+RTP+NAI+G + 
Sbjct: 489 AETELERYRQHLESLVASRTQELSEARDAAEAANRAKSAFLANMSHEIRTPMNAIIGLNH 548

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++ E      +    +++  +  +  HLL +I++ILDLS+IEAG   L     S  +++
Sbjct: 549 LLQHEV----TDPRAHDWLTKVGEAAAHLLRIIDDILDLSKIEAGHLTLETGEFSPRNLI 604

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                +L  RA++K + +   I P +   +  D   ++Q++LN +SNA+KF+   G + V
Sbjct: 605 ERTFSLLGDRARQKGLRLHAAIAPDVPESLVGDALRLQQILLNFVSNAIKFSEQ-GEIRV 663

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                +        ++ + D G G+   +   +   F QG  +      G GLGL IA+ 
Sbjct: 664 RAWTQAEDAEWMRLHLDVADQGIGLTAEQQARLFQPFAQGDESTTRRYGGTGLGLAIARR 723

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           +     G+  + S+   G    A +   R  +    D    +++
Sbjct: 724 LANLMQGEVGVVSEPGRGSTFWASVRLRRSPSAAAPDGAARSEH 767


>gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1035

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                    ++  L   +E      E   A++    + +RAEE + AKS FLA+MSHE+R
Sbjct: 464 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 523

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+G +E+   E +     E  +  +     S + LL ++N++LDLSR+E+GR  L
Sbjct: 524 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 579

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380
                S   + R  + ++   A  K ++    I      +V  D   +RQV+LNL+ NA+
Sbjct: 580 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 639

Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           KFT  GG V +TV                     RG   ++ D G GI       +  SF
Sbjct: 640 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 698

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +      G GLGL I++ ++   GG+  +RS+  +G E    +P  
Sbjct: 699 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 749


>gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
 gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
          Length = 569

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        +  +   ++  I +    + +L+ ++
Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLIEGA--KDDVASLDMFLNIILKESNRIESLVMDL 399

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE  R EL  + ++L ++    +  LQ +A++KNIEI  +I P +    A++  +
Sbjct: 400 LDLSHIEQQR-ELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKI 457

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLLSNA+ ++    RV V V     +  Y+ I+D G GI++ E   +   F +  
Sbjct: 458 AQVITNLLSNAINYSLENNRVIVRVYRQQSK-VYLEIQDFGIGISKEEQKHIFERFYRVD 516

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   ++S+  +G       
Sbjct: 517 KARSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 560


>gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
 gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
          Length = 320

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 28/291 (9%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   L K N ++ S   ++   +     A      +++ AE  + AKS FLA+MSHE+RT
Sbjct: 27  LAKKLEKLNEELESLVLQRTHQLV---KANEELQTSKQAAELASQAKSDFLANMSHEIRT 83

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P++ ILG S +     +G    +  KE +  +    + LL++IN ILDL +IEAGR+E+ 
Sbjct: 84  PIHGILGMSAL----VLGTSLTDEQKENMTTVSECAELLLHIINSILDLGKIEAGRFEVE 139

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
             + +L  +++  + +LQ RAQ  N+ +  +ID ++   +  D   +RQ +LNL+ NA+K
Sbjct: 140 LISFNLHHVLKSTVHILQPRAQAHNLRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALK 199

Query: 382 FTAIGGRVHVTVG-------------------WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           FT   G V V V                    W+      + I D+G GI++ ++  V  
Sbjct: 200 FTPE-GEVRVEVSVHRFGMQDDSVLSRLNASQWSDMSEMMLEISDSGIGISKNKLKDVFK 258

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q   +I     G GLGL + Q  +   GG  L+ S+  +G     +LP
Sbjct: 259 PFTQADASISRLYGGTGLGLCVVQRFVELMGGHILVESEYGKGSSFYIVLP 309


>gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 543

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        +  +   ++  I +    + +L+ ++
Sbjct: 316 RREFVANVSHELKTPITSIKGFAETLIEGA--KDDVASLDMFLNIILKESNRIESLVMDL 373

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE  R EL  + ++L ++    +  LQ +A++KNIEI  +I P +    A++  +
Sbjct: 374 LDLSHIEQQR-ELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKI 431

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLLSNA+ ++    RV V V     +  Y+ I+D G GI++ E   +   F +  
Sbjct: 432 AQVITNLLSNAINYSLENNRVIVRVYRQQSK-VYLEIQDFGIGISKEEQKHIFERFYRVD 490

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   ++S+  +G       
Sbjct: 491 KARSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 534


>gi|262198449|ref|YP_003269658.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262081796|gb|ACY17765.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 699

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 165/387 (42%), Gaps = 13/387 (3%)

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
             +     Y     + VG+    L W ++   +              + L   L+   + 
Sbjct: 313 QRVGTMRDYRGVETVAVGRYLPSLRWGMVVKQDVAEAAAAMRRHRDLSLLAGVLTALGVL 372

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNV 212
                 A  +S   V +  + + + +  +           +      F  +T  L    V
Sbjct: 373 GLAFAVARSISRPIVRLTGAVRRLAAGDLEQTLPQDSHDEIGVLDQAFNTMTAQLRDLYV 432

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    AE+   +AE   A       R  AE  + AKS FL +MSHELRTPLNAILG++E
Sbjct: 433 TIEDKVAERTAQLAE---ANLALRHARDAAERASRAKSTFLTNMSHELRTPLNAILGYTE 489

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  E +    +  + + + +IH++G HLL L+ E+LDL+RIEAG+  L E  + L  +V
Sbjct: 490 LLREEAVEQGESARFSD-LDNIHQAGVHLLGLVEELLDLARIEAGKVTLIEVEVELSAVV 548

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +  +  +    ++    +   +   L     DE   RQ+++NLL NA KFT   G + V 
Sbjct: 549 KRSLQTVAPVVEKNGNRMELDLASDLGRARLDEGKTRQILINLLGNAAKFT-ENGVITVR 607

Query: 393 VGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +          +++ D G GI    +  +   F  G  +      G+GLGL +++ 
Sbjct: 608 GRRRAADDDGPDIISLAVIDTGAGIVAERLEKIFEPFETGDTSSTREFGGMGLGLSLSRK 667

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           +  + GG+ +  S+L EG      LP 
Sbjct: 668 LAEHMGGRLVATSELGEGSVFTLELPA 694


>gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
 gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
          Length = 764

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 13/241 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +    ++  + Y   I  SG+ LL +IN++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SDEQQLYANTIKNSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEA + EL      L   V E +++LQ  A++K + +    D  L +    D   
Sbjct: 272 LDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422
           +RQV+ NL+ NAVKFT+  G V + +   S  G      +++I+D G GI E ++  +  
Sbjct: 332 IRQVLTNLVGNAVKFTSE-GHVALQITGISNAGDKICSIHVTIEDTGIGIPEEKVQDIFG 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480
            F Q         +G GLGL I++ ++   GG+  + S+  +G        LP     + 
Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELPLAEGAST 450

Query: 481 I 481
            
Sbjct: 451 S 451


>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
          Length = 1035

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 368 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 425

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 426 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 485

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 486 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 538

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 539 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 594

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 595 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 654

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 655 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 713

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 714 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 773

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 774 TVALPLREA 782


>gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1022

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                +     +RAE  N AKS FLA+MSHE+RTPLN +LG ++V+    + P+     +
Sbjct: 285 RAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLTPV----QR 340

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y   I  SG  L+ ++N++LD++++++G+  +    + L   ++E       +A+EK++
Sbjct: 341 NYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFAQAREKDL 400

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG--RGQYIS 404
           E+   + P +   V  D   +RQ++ NL+ NA+KFT+ GG  V V+           +IS
Sbjct: 401 ELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEKSGRLHIS 460

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G+ E +   +   F Q     +   +G GLGL I + +    GG+  + S+   
Sbjct: 461 VVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIGVTSEKGV 520

Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488
           G      +P   V+    +   ++
Sbjct: 521 GSTFSFWIP---VIEERADSEDDA 541


>gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2724

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/252 (34%), Positives = 130/252 (51%), Gaps = 17/252 (6%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLASMSHELRTPLN ILG++++++  +      +  K+ I  IH+ G+HLL LI
Sbjct: 2264 NRAKSAFLASMSHELRTPLNGILGYAQILKTNS---NLTQKQKDGIEIIHQCGEHLLTLI 2320

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
            N+ILDLS++EAG+ EL          +     + +L+A +K+I         +   V  D
Sbjct: 2321 NDILDLSKVEAGKLELYPEDFHFPSFLVGLCEIFRLKAIQKDITFNYNPPTHIPQIVHGD 2380

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPT 419
            EK +RQ+++NLLSNAVKFT   G V  TV     G  +       ++D G G++  ++  
Sbjct: 2381 EKRLRQILMNLLSNAVKFTDT-GTVTFTVNIIHKGQMTNDKIRFQVEDTGIGMSAEDLEK 2439

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LP---- 473
            +   F Q         +G GLGL I + ++A  G Q  + S    G +      LP    
Sbjct: 2440 IFLPFEQI-KETSRHHEGTGLGLAITKKLIALMGSQIRVESHPGVGSKFWFEVDLPEVSS 2498

Query: 474  NTRVLNFIPEDN 485
            + + +   P D 
Sbjct: 2499 SAKFIPAKPLDT 2510


>gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 731

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q +KD     +        +T   AE  NL KS FL ++SHEL TPL  I+G S  ++
Sbjct: 334 QVQEQKDIFERRVIERTQELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQ 393

Query: 276 LETMGP--LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
             +     L  +  K Y+  I  +G  LL LIN++L+ S++ AG+  L     SL  +  
Sbjct: 394 KCSAANNFLPPDKQKHYLKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCN 453

Query: 334 ECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             + +++  A+ K I +  ++         +AD   ++Q++L LL NA+KFT   G V +
Sbjct: 454 HVLEIIKTEAETKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTL 513

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            + W  G      ++D G GI   +IP +   F Q   + K    GVGLGL + + ++  
Sbjct: 514 RL-WKEGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVEL 572

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
           H G   + S L +G      L
Sbjct: 573 HRGTIEVESCLDKGSIFTVRL 593


>gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
 gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
          Length = 913

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 9/258 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             ++  +     N AK+ FL+SMSH++RTP+NAI+G + +     +   + E   + +  
Sbjct: 389 ALEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIAR---VNLESPEKVGDCLNK 445

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+ S +HLL+LINE+LD+S+IE+G+ +LS  A  L ++++E   M +    EK  +    
Sbjct: 446 INVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQEASDMCKALLTEKKHDFRVI 505

Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKD 407
           +       V  D   ++QV LNLLSNA+K+T  GG++ + +                  D
Sbjct: 506 VGQVQHEKVITDGDRLQQVFLNLLSNAIKYTPEGGKITLLINEKPSIIPKKGQYEFIFTD 565

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG G+ +  +  +   F +   +  S  QG GLG+ I ++I+    G   ++S+  +G +
Sbjct: 566 NGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENIVHMMNGTIDVKSEPGKGSQ 625

Query: 468 VIAILPNTRVLNFIPEDN 485
            I  +P    +     D+
Sbjct: 626 FIVTVPLELQIEEEQSDD 643


>gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium]
          Length = 1574

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 122/271 (45%), Gaps = 17/271 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                E +  +     + ++A + N AK  FLA+MSHE+RTP+NAI+G + +     +   
Sbjct: 806  RDATERKFMEDELRASEEQARQANRAKGEFLANMSHEIRTPMNAIVGMAYLAMQTGLTS- 864

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL- 341
                 + Y+  I  +   LL LIN+ILD SRI+AG+ E+      L  ++      L   
Sbjct: 865  ---QQRGYLEKIQGASHALLRLINDILDFSRIDAGKLEMENLPFELDQVLGGVFDGLLPK 921

Query: 342  RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A++  +E+       L   +  D   + QV+ NL  NA+KFT   G V V++   +   
Sbjct: 922  LARKGGVELLLDCPGDLPRRLRGDGVRLGQVLTNLCDNAIKFTEA-GEVAVSIRLEAMDE 980

Query: 401  QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            + ++    + D+G GI   +I  +L  F Q   +      G GLGL I ++++   GG F
Sbjct: 981  EQLTYAFVVTDSGIGIDPEQIERILQPFQQADSSTTRRYGGTGLGLAICRNLVTMMGGVF 1040

Query: 457  LIRSKLREGVEVIAI-----LPNTRVLNFIP 482
             + S    G            P   +   IP
Sbjct: 1041 QVDSAPGRGSRFAFTARFGRFPKEEI-PAIP 1070


>gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1039

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 12/322 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                +    + P + A+    +      DI    M       +T++   + + +    +
Sbjct: 568 AEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHL-RAVGRVDEGSGA 626

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   + E +  +    E + +A   N AK  FLA+MSHE+RTPLN I G   ++  
Sbjct: 627 LVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLAD 686

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            ++ P      +E      RS + L +L+ ++LD+SRI+AG+ E+      L   +R+  
Sbjct: 687 ASLAP----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVR 742

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +    A +  + +   ID ++   V  D   ++QV+ NLL NA KFT   G V +    
Sbjct: 743 ELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEK-GSVTLRAEH 801

Query: 396 TS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            S           S++D G GI + +   + T F Q     K + QG GLGL I + I+ 
Sbjct: 802 LSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIR 861

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
             GG     S+   G  V   L
Sbjct: 862 VMGGHLAFESEAGTGTTVYFTL 883


>gi|254227791|ref|ZP_04921222.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395834|ref|YP_003287687.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
 gi|151939833|gb|EDN58660.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339428|gb|ACY53222.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
          Length = 858

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK AE+   A++ FLA MSHE+RTP+N ILG +++++         E     I  +  SG
Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +   + K + +  +     
Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICENKGVNLVIENKIDP 587

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SN+VKFT   G V +                + I D G GI
Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGAENSVLVVEITDTGIGI 646

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I +S++    G   +RS+   G   +  +
Sbjct: 647 EPDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 707 PVKDRERVLTPL 718


>gi|288940116|ref|YP_003442356.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288895488|gb|ADC61324.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 451

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +   L         +     +      + Q  +D L   ++   +     +++AE  N A
Sbjct: 153 MMDFLTRLARVMGEMGLARVRQQEANRTLQQHRDHLEELVQARTAELSLAKEQAEAANRA 212

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLNAI G + ++    +          ++  +  + +HLL +I+ I
Sbjct: 213 KSAFLANMSHELRTPLNAITGMAYLVRASGVSV----KQAGWLDTLDGASRHLLEIISAI 268

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LS+IEAG  EL    I L  +V   +  +  +A+ K++ I  ++DP  + +  D   +
Sbjct: 269 LELSKIEAGGMELDTVPIRLDTLVASVVDTILPQARAKHLHIGLELDPVSTPLMGDPARL 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSF 424
           RQ +LN  +NAVKFTA  G V +                 ++D G G+    I  +  +F
Sbjct: 329 RQALLNYAANAVKFTAT-GSVTLRTKVIEQTPEFVMMRFEVEDTGVGLPADVIDRLFENF 387

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            Q   +      G GLGL + + +    GG   + S   EG      
Sbjct: 388 EQADNSATRRFGGTGLGLAMTRRLAHLMGGTVGVSSTPGEGSTFWFT 434


>gi|172062322|ref|YP_001809973.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MC40-6]
 gi|171994839|gb|ACB65757.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MC40-6]
          Length = 1034

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 163/467 (34%), Gaps = 24/467 (5%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
           V  L+       G    S   F    +  H +     +     + L   +I         
Sbjct: 280 VESLLKLIPWRGGASSSSAPVFRDGFLLFHGK--LESTGWTLAYALSWTDIAA--GVARS 335

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
                  TL        L  +    +         R++         +    + L     
Sbjct: 336 AGTLGAATLLALMVMWGLLLRFHRREFVPLYARSQRVFDSEALCRSVIEMAPIGLGLIAR 395

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
               ++ +  + T ++              A           +    +    V  + L  
Sbjct: 396 DDGHFMLVSPALTDMVERIGGDYHVLSSQVADAWQARGHAGGVLYGDLRVGDVQAVDLHL 455

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                 + +           +  ++    K  L+          +E  + A+  N AKS 
Sbjct: 456 EFIACGARY-----QGKDVLIAAVADMTAKRQLV-------QQLEEAVRAADSANAAKSS 503

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILG  E++E   +    + T    +  +H S   LL L+++ILD 
Sbjct: 504 FLAAMSHEIRTPLNVILGNLELLERSAL----DATQHGRVRTLHASATSLLALVSDILDF 559

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQ 370
           S+IEAG   +      +I+ V   +      A+ K +++F +        +  D   + Q
Sbjct: 560 SKIEAGAMSVESIEFDVIETVERELHAFATIAKAKGLQLFCEIHACGTQRMRGDPTRLAQ 619

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V+ NLLSNA+KFTA+G           G       I ++D G GI       +  +F Q 
Sbjct: 620 VLRNLLSNALKFTAVGRVTVRVAVVVEGHDAPELSIEVEDTGIGIGAEHRRKLFKAFSQV 679

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +I     G GLGL +   ++A   G+  + S+   G     +LP 
Sbjct: 680 DASITRRYGGTGLGLALCDRLVAAMAGRIAVESEAGVGSRFKVLLPL 726


>gi|302771433|ref|XP_002969135.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
 gi|300163640|gb|EFJ30251.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
          Length = 272

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 25/264 (9%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A      +++ AE  + AKS FLA+MSHE+RTP++ ILG S +     +G    +  KE
Sbjct: 3   KANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSAL----VLGTSLTDEQKE 58

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +    + LL++IN ILDL +IEAGR+E+   + +L  +++  + +LQ RAQ  N+ 
Sbjct: 59  NMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNLR 118

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------- 401
           +  +ID ++   +  D   +RQ +LNL+ NA+KFT   G V V V       Q       
Sbjct: 119 LSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPD-GEVRVEVSVHRFGMQDDSVLSR 177

Query: 402 ------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        + I D+G GI++ ++  V   F Q   +I     G GLGL + Q  +
Sbjct: 178 LNASQWSDMLEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCVVQRFV 237

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
              GG  L+ S+  +G     +LP
Sbjct: 238 ELMGGHILVESEYGKGSSFYIVLP 261


>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1095

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 12/276 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            Y     +V +L+  +E+  L  E +  +    + ++ AE  + +KS FLA+MSHE+RTP
Sbjct: 676 PYQYTARDVNLLTSVSEQVALAIERKANERDLLKAKELAEAASRSKSEFLANMSHEIRTP 735

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG  ++ +   +    +   ++++     SG+ LL +IN+ILD S+IEAG+ E+  
Sbjct: 736 LNGVLGMLQLAQTTRL----DAEQRDFVDTALASGRSLLAIINDILDFSKIEAGKLEVIT 791

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
              SL   + + +   +  A++K + +   I P     +   +  +RQ++ NL+ NA+KF
Sbjct: 792 EPFSLTPFLDDVLTTFRGEARDKGLTLAVDIWPGTPEHLTGGKSRVRQILFNLVGNAIKF 851

Query: 383 TAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           T   G V ++V                S+ D G GI +  +  +   F Q   +     Q
Sbjct: 852 TDQ-GSVTISVCPLGPDPRDGRTRLLFSVSDTGIGIPDAMVDLIFEPFTQVDGSYMRRHQ 910

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL I + ++   GG   I SK   G  +  +L
Sbjct: 911 GAGLGLGIVKRLIGLLGGSMCIDSKTGRGTTLHVVL 946


>gi|269963512|ref|ZP_06177837.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831687|gb|EEZ85821.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 859

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+   A++ FLA MSHE+RTP+N ILG +++++         E  K  I  +  SG
Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQKNQIDVLCHSG 528

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +     K +E+  +     
Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICSNKGVELVIENKLDP 588

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SNAVKFT   G + +                + I D G GI
Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPS-GSIRLNAELEQFYGADNSVLVVEITDTGIGI 647

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I ++++    G   +RS    G   +  L
Sbjct: 648 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGVGTTFVVTL 707

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 708 PVKDRERVLRPL 719


>gi|189466273|ref|ZP_03015058.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
 gi|189434537|gb|EDV03522.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
          Length = 644

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 10/270 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L       L        L  EL+ ++S   E + RAEE +  KS FLA+MSHE+RTPLNA
Sbjct: 378 LLSGLFVSLYFYYHTKKLKDELQESESALREAKDRAEESSRLKSAFLANMSHEIRTPLNA 437

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS+V+     G  + +  + Y+  I  +   LL LIN+ILD+SR+EA R   +    
Sbjct: 438 IVGFSDVLAS---GGTSVDEQQGYVDIIKTNSDLLLRLINDILDVSRLEADRVTFTIEKC 494

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            ++ + ++ +  +  +A++   E   + D     +  D + ++QVI+NLLSNA KFT   
Sbjct: 495 DVVPLCQQVLASVS-QARKSENEFIFECDRESVDLRTDTQRLQQVIINLLSNADKFT-RN 552

Query: 387 GRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           G++ + +     +     S+ D G GI   +   V   F +         QG GLGL I 
Sbjct: 553 GKITLKLEVDDEKRVATFSVSDTGTGIPLEKQKQVFERFEKL----NEYVQGTGLGLSIC 608

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  +   GG+  + S   +G   +   P  
Sbjct: 609 KLTVEKWGGEIWVDSGYTDGARFVFTHPFE 638


>gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHE++TP+ AI GF E +    +   + E  K ++  I R    L  ++ +
Sbjct: 366 MRRDFVANVSHEIKTPITAIKGFVETLLDGALD--DKENAKRFLEIISRHTDRLKAIVED 423

Query: 308 ILDLSRIE-AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +L+LSRIE AG  EL     S+ + +   + + + RA  +NI +       L++V+ D  
Sbjct: 424 LLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENITVEMDCPDDLTAVF-DPT 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q ++NLL NAVK++   G V V      G    I ++D GPGI+E  +P +   F +
Sbjct: 483 MIEQAVVNLLDNAVKYSEEHGVVRVGAKA-EGGEVLIWVEDEGPGISEEHLPRLFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              A      G GLGL I + IMA HGG   ++S+  +G      L
Sbjct: 542 VDKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFTLHL 587


>gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
 gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
          Length = 466

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  H    +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWIGRKIIIA----ITKPLSQMERVANHFATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    ++       E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMA----HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 444 ESEKGKGTTVFIKL 457


>gi|119186753|ref|XP_001243983.1| hypothetical protein CIMG_03424 [Coccidioides immitis RS]
          Length = 2341

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246
              ++ A +F       +  +N  ++  Q        E E  AK    E R      EE  
Sbjct: 1820 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1879

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AKS FLA++SH+LRTP+  ++G SE+++   +    +     Y+  I      LL LIN
Sbjct: 1880 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1935

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364
            +ILD S++EAG+ ++S   ++L   + E +  L+   +++ +E  + +D       V  D
Sbjct: 1936 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1995

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420
               + Q+ +NLLSN+ KFT   G V V           I +     D G GI+   +  +
Sbjct: 1996 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2054

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461
               F Q   +   +  G GLGL I ++I+    GG+  +RS+
Sbjct: 2055 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2096


>gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 1084

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 6/287 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S   +     E+  + A+L+++       R +AE  N  K  FLA++SHELRTPL
Sbjct: 656 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHANRVKDEFLATLSHELRTPL 715

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+S +++ +   P         +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 716 NAILGWSRLMQSDIADP---ANMGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAE 772

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +  +VR  + ++Q  A  + I +            + D   ++QV+ NLLSNA+KFT
Sbjct: 773 HFDIAGLVRSVLELMQPTALARKIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 832

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +         + ++D G GIA   +P V   F Q          G+GLGL 
Sbjct: 833 PAGGTVRVAMD-VEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 891

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
           I++ ++  HGG     S    +G     +LP    ++ +   + ++T
Sbjct: 892 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRPASADTT 938


>gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 591

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 175/471 (37%), Gaps = 22/471 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
           +   +      LG      M     +    V+        L +  +L+  + +      +
Sbjct: 135 LDTDLMYAAKRLGDGTRPLMVVRLALSLSSVKKTLSQLQRLIMGAVLLGALLSLGMAYMV 194

Query: 72  FPMWS-----LITLAVYAANLSLGKKVMNSDIKIG-EVYVWRIWLLVGQIAIGLCWTLLT 125
              +S     + T+A   A   L ++          ++      +     A         
Sbjct: 195 ARGFSRPLKKMTTVATAIAAGDLQRRFRQYPGHEIGDLGRAFDRMADNMQAR-------- 246

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           + +          + +     + +        +   A+        + +  Q    +   
Sbjct: 247 IDDITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALMTLLDLPSMPIGMQLSEFVRNP 306

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRKRAE 243
           ++  A              +       + L  Q  +    A    A ++  +   RKR E
Sbjct: 307 EVLDAIRQVRRGEGHVSTEFRTLSRAPRFLEAQVVRLPDSAPQAGAVAVFHDLTERKRLE 366

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E       F+A++SHELRTPL AI G SE +    +   N    K ++  I R+   L  
Sbjct: 367 EVRR---DFVANVSHELRTPLTAIRGSSETLLGGAL--ENQHYAKHFVEMIARNASRLER 421

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L  ++LDL+ +E+GR EL + AI    +    +  +   A+E+ +E+ +++      + A
Sbjct: 422 LTQDLLDLAAMESGREELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMA 481

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
             + + Q +LNLL NA+K+T  GG+V + +   +     IS+KD+G GIA   +  +   
Sbjct: 482 SRRHLEQAVLNLLDNAIKYTESGGKVTLALT-EAEGQTRISVKDSGAGIAPEHLGRIFER 540

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +          G GLGL I + I   HGG+  + S   +G     +LP 
Sbjct: 541 FYRADKDRSRQMGGTGLGLAIVKHIAQKHGGRVEVESTPGQGSTFTLVLPA 591


>gi|312194418|ref|YP_004014479.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311225754|gb|ADP78609.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1425

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/363 (24%), Positives = 160/363 (44%), Gaps = 17/363 (4%)

Query: 125  TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             L          + +     +L  + +++ + F   +   +      + +    IM+   
Sbjct: 811  GLGSAPPSDLVVVPVLFENQVLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANAR 870

Query: 185  LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             +  LA             +  L ++N ++       ++   E+E A++  +E  ++   
Sbjct: 871  TEELLAQSQRLTQ-ELRSQSVELQRTNAELEEKAQLLEEKNTEIEQARTGLEEKAEQLAL 929

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             +  K+ FLA+MSHELRTPLN++L  ++++       L      E+   IH SG  LL L
Sbjct: 930  SSQYKTEFLANMSHELRTPLNSLLILAKLLADNQDDNLTY-QQIEFARTIHSSGSELLML 988

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
            IN+ILDLS++EAG+ ++  +A+    +       ++  A+ K +    ++   +      
Sbjct: 989  INDILDLSKVEAGKMDVEATAVGTAAMCDALAQAVRPVAEVKGLTFEVQVADDVPAEFVT 1048

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-------------SIKDNGP 410
            DE+ ++QV+ NLLSNAVKFT   G V + V   S  G +I             ++ D G 
Sbjct: 1049 DEQRIQQVLRNLLSNAVKFTDS-GTVRLDVTVASSDGPFIVPSLRSAPTVLSFAVSDTGI 1107

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GIA  ++  +  +F Q          G GLGL I++ I    GG   + S L +G     
Sbjct: 1108 GIATDKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSVLGQGSTFTL 1167

Query: 471  ILP 473
             +P
Sbjct: 1168 YVP 1170


>gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
 gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
          Length = 1325

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 10/277 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   +   L   N             I E +  +   ++++  A + + AKS F+A+MSH
Sbjct: 641 FIKVMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKSEFVANMSH 700

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++GFS+++    +    NE   +Y+  + +S   LL+LIN++L+ S+IE+G+
Sbjct: 701 EIRTPLNGVIGFSDLLMKTPL----NEVQHKYMKTVFQSANTLLDLINDVLNFSKIESGK 756

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            +L     SLI +V E + + +  A +K +E    I+  +   +W D   ++Q+++NL+S
Sbjct: 757 LQLDIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWIDGVRLKQILMNLIS 816

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NA+KFT   G V + V + +          S++D G GIA+G    +  +F Q   ++  
Sbjct: 817 NAIKFTHR-GYVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKIFNAFIQEDASVTK 875

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              G GLGL I+  I+     +  ++S+L  G E   
Sbjct: 876 KYGGTGLGLSISGKILGLMNSKLKLKSQLGIGSEFYF 912


>gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2]
          Length = 1107

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 18/272 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+  +  +       K A   N AK  FLA+MSHE+RTP+NAI+G + +         
Sbjct: 387 RDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHEIRTPMNAIIGLTHLALETDNYT- 445

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+  +  S   LL LIN ILD S++EA + EL  +  +L D++ +   + Q +
Sbjct: 446 ---QQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIELHHADFNLADMMNKLAQVFQHK 502

Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A++K++++   +   +  +   D   + QV++NLL NA+KFT   G V +TV        
Sbjct: 503 ARQKHLQLLFDMRLDTDVTCNGDSDKIYQVLVNLLGNAIKFT-RHGFVKLTVSKEKD-AL 560

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G GI       +  +F Q   +I     G GLGL I++ ++    G+    S+
Sbjct: 561 SFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGLGLAISKRLVELMHGELEFTSE 620

Query: 462 LREGVEVIAILP-----------NTRVLNFIP 482
           L +G +    +P             +V   IP
Sbjct: 621 LGKGTQFCFAVPELVHETANEISREKVKPAIP 652


>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 1032

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 482

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 651

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 652 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 771 TVALPLREA 779


>gi|188991423|ref|YP_001903433.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|167733183|emb|CAP51381.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1146

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 8/330 (2%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKD 222
                  + +A      +      +     +  A      +    + +S   +     E+ 
Sbjct: 676  RALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLREQAMARSASHLAGIVIERT 735

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + A+L+ +       R +AE  +  K  FLA++SHELRTPLNAILG+S +++ +   P 
Sbjct: 736  RVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP- 794

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  + +  I RS +    +I+++LD+S I +G+  L      +  + R  + ++Q  
Sbjct: 795  --AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPT 852

Query: 343  AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            AQ + I +            + D   ++QV+ NL+SNA+KFTA  G V V++     +  
Sbjct: 853  AQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPDGDVRVSLE-VEEQRL 911

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + ++D G GIA   +P V   F Q          G+GLGL I++ ++  HGG     S 
Sbjct: 912  RLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGAYSA 971

Query: 462  -LREGVEVIAILPNTR-VLNFIPEDNHEST 489
                G     +LP    V +  P     +T
Sbjct: 972  GEGHGATFTVVLPFQHGVSDQRPAPEPANT 1001


>gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 613

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 11/321 (3%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
               +   ++  L    +    V+ I      A       Y       +  ++       
Sbjct: 297 FFIAASSLIIAVLVAILLNRKIVVSIKKLKNSAEIFGHGKYDERVFIDTGDELEELAESF 356

Query: 222 DDLIAELEVAKSLS----DETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +  E+  A        +E +      +E +  KS  ++ +SHELRTPL +I G+ +++
Sbjct: 357 NGMAEEISRANKKLKKDANELKNSYDELKEVDDLKSELISIVSHELRTPLTSIRGYIDLL 416

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + ET G L NE  KE++  I  + + L  + + + DL  ++          +++ + V E
Sbjct: 417 KDETAGKL-NEKQKEFVSVISENSERLKRITDNMSDLVTVDNEHLNTKLDKLNIKNAVEE 475

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  LQ  A  +NI + + +D     +  D+  + QV+ NL+ NAVKF+    +V VT G
Sbjct: 476 IVSSLQHFADSRNIILLEDVDD--LYIKGDKSKIHQVLANLIENAVKFSKTQTKVTVT-G 532

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           +      ++ I D GPGI +  +  V   F Q   + K    G GLGL + + I+ +HGG
Sbjct: 533 YEDNGNIHLEITDQGPGIPKEYLDKVFDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGG 592

Query: 455 QFLIRSKLREGVEVIAILPNT 475
              + S++ +G  V  + P  
Sbjct: 593 SIWVESRIGKGTNVHVLFPIA 613


>gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
 gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
          Length = 1370

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/423 (24%), Positives = 170/423 (40%), Gaps = 27/423 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  + V ++  G       L          L I     +L  + +
Sbjct: 639  RIPLGRSLVGQAARNRRAITVEELPAGYVTISSGLGRTAPTALRVLPIVVEDQVLGVIEL 698

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITY 205
            ++++ F   +  FL      + ++   I++    D  L                      
Sbjct: 699  ASVTRFTQIHEDFLDQLMETIGVNVNTIVANARTDELLLESQRLTAELQARSEELQVQQD 758

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++        +   ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 759  ELQRSNAELEEKATLLAEQNRDIETKNLEIEQARQELETRAQELSLASRYKSEFLANMSH 818

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 819  ELRTPLNSLLILAQLLAQNPSHNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 877

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   + L  ++       +    +K++E      P +   +  D+  +RQV+ NLLS
Sbjct: 878  MDISPERVPLRRLLDYVEATFRPMTSQKSLEFAVSTAPGVPVDLLTDDSRLRQVLRNLLS 937

Query: 378  NAVKFTAIGG-----------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  G             V V+V    G      +KD G GIA  ++ T+  +F Q
Sbjct: 938  NAVKFTERGRVELLIEPAQAHDVPVSVHR-EGAVVAFHVKDTGIGIAAHQLETIFGAFQQ 996

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                      G GLGL I + I    GG   + S   +G      LP  R     P    
Sbjct: 997  ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVESTPGQGSTFTLYLPVARADFEEPNRAP 1056

Query: 487  EST 489
            +  
Sbjct: 1057 QPA 1059


>gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 968

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A       ++ AE  N+AKS FLA+MSHE+RTP+N ++G  E+++   +        ++ 
Sbjct: 438 AIQALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTELDS----DQRDL 493

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +     SG  LL +++++LD S+IEAGR EL +  + L  +V   +  +   A  K++ I
Sbjct: 494 VSTTRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSI 553

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQY---IS 404
              +DP L   V AD   +RQ++ NL  NAVKFTA  G V + VG   T  +G+    I 
Sbjct: 554 STFVDPGLPPLVLADPVRLRQILFNLAGNAVKFTAQ-GLVAIHVGRCGTDEQGRVMVSIR 612

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI +     +   F Q   +      G GLGL I + ++    G     S+   
Sbjct: 613 VVDTGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNV 672

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490
           G      LP     +  P++  E T+
Sbjct: 673 GSSFWCRLPLPTAEDAAPDNLAEQTE 698


>gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae
            ATCC 10712]
          Length = 1785

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 169/422 (40%), Gaps = 41/422 (9%)

Query: 109  WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
              +      G       L E        L +     +L  + +++   F      FL+  
Sbjct: 1164 RTIQLNAPPGYLKISSGLGEASPAHVIVLPVLFEGKVLGVIELASFQPFTQIQRDFLNQI 1223

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITYHLFKSNVKILSCQAEKD 222
              ++A +   I      ++ L              +   +    L  SN+++        
Sbjct: 1224 AELIATTVNTISVNTKTEVLLQQSQELTEQLKERSAELEHRQKELQGSNLELEEKAELLA 1283

Query: 223  DLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                ++EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  ++++ 
Sbjct: 1284 RQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLA 1343

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                  L      E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V   
Sbjct: 1344 DNAETNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYV 1402

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--- 391
                +    EK ++   ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G    V   
Sbjct: 1403 EATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRP 1462

Query: 392  -----------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
                             ++          S+ D G GIA  ++  +  +F Q        
Sbjct: 1463 AGADVPQSIREQLLEAGSLRDPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRK 1522

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI------PEDNHES 488
              G GLGL I++ I    GG+    S+   G      LP +            P+D  ++
Sbjct: 1523 YGGTGLGLSISREIARLLGGEIFAASEPGRGSTFTLYLPLSPTELPSGGYGQGPQDAEDT 1582

Query: 489  TQ 490
             Q
Sbjct: 1583 QQ 1584


>gi|77359512|ref|YP_339087.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874423|emb|CAI85644.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 924

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 13/296 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +          +   L ++       Q  +++L  E++      ++    A++ + A
Sbjct: 218 LNVIALNINFLLKKVQAALSENEKTRKELQKLQNNLEIEVQTRTLALEKETLNAQKASEA 277

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+N ++G  +++    +    + +       I  S   LL+++++I
Sbjct: 278 KTTFLATMSHEIRTPMNGVIGTIDLLRQTNL----DGSQYRLSTIIRESAFSLLSILDDI 333

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+  +     S+ D + E + +L   A+ +++++   I P +   +  D   
Sbjct: 334 LDFSKIEAGKLNIDPIPFSVTDTIEEVVRVLSSIAKHRDLDLNLSIAPDIPINLIGDNTR 393

Query: 368 MRQVILNLLSNAVKFTA----IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPT 419
           +RQ++ NL SNA+KFT+      G+V+++V       ++ +    + DNG G+++ ++  
Sbjct: 394 VRQILYNLCSNAIKFTSTSESHKGQVNISVEVAHNTAEHFTLRFCVTDNGKGMSQAQLRE 453

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F Q   +I     G GLGL I +S+     G   + S +  G E    LP +
Sbjct: 454 IFNPFIQAESSITREYGGTGLGLSICKSLTELMLGTISVNSNIGIGSEFTVELPFS 509


>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 812

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G + ++    +    +   +++   +  S ++L+ +IN+I
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKL----DPEQRQFAESVRNSAENLMTVINDI 338

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+    E    L++ +   + ML  RAQ K IE+   I P +   +  D   
Sbjct: 339 LDFSKIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGR 398

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           +RQ++ NLL NA+KFT   G V ++                + D G GI+      +  S
Sbjct: 399 LRQILTNLLGNAIKFT-EHGEVVLSTTLERETATHAIVRFDVTDTGIGISRDVQARLFQS 457

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           F Q   +      G GLGL I++ ++A   G+  ++S+   G      
Sbjct: 458 FEQADSSTTRRYGGTGLGLAISKQLVAMMHGEIGVQSEAGVGSTFWFT 505


>gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces
            ambofaciens ATCC 23877]
          Length = 1331

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/410 (24%), Positives = 166/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  ++V ++  G       L E        + I     +L  + +
Sbjct: 600  RIAFGRTLVGQAARSRRTIVVDELPPGYVTISSGLGEVVPTALVLVPIVVEGQVLGVIEL 659

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY------ 205
            ++++ F      FL      + ++   I++    D  LA                     
Sbjct: 660  ASVAPFTQINRDFLELLMETIGVNVNTIVANARTDELLAESQRLTAELQARSAELQVQQE 719

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L +SN ++    +       ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 720  ELQRSNAELEDKASLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+
Sbjct: 780  ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   ++L  ++       +    +K ++          + +  D+  +RQV+ NLLS
Sbjct: 839  MDVSPERVTLRQLIEYVEATFRPMTTQKGLQFTVSTAAGAPADLLTDDSRLRQVLRNLLS 898

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V + V                      +KD G GI E  + ++  +F Q
Sbjct: 899  NAVKFTERGG-VELAVEPAHDDEVPPGVVRGGAVVAFRVKDTGIGIPEQNLESIFGAFQQ 957

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + +    GG   + S    G      LP  R
Sbjct: 958  ADGTTSRKYGGTGLGLSITREMAQLLGGAVTVDSTPDRGSTFTLFLPAAR 1007


>gi|91772433|ref|YP_565125.1| histidine kinase [Methanococcoides burtonii DSM 6242]
 gi|91711448|gb|ABE51375.1| Histidine kinase domain protein [Methanococcoides burtonii DSM
           6242]
          Length = 235

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE+ NL+KS F+ +MSHE+RTPLN+++GFS V+  +      +E+   Y+ +I  +G+HL
Sbjct: 4   AEDANLSKSEFIMNMSHEVRTPLNSVIGFSSVLLDKPGNR--DESQVRYLHNILFNGKHL 61

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L + NEIL +S+IE+G          + +++ E    +   A EK I +   ID   + +
Sbjct: 62  LEIFNEILAISKIESGAMVFQPKKFLISNVISEIETSMMPFALEKGIILTHIIDVENAIM 121

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            ADE   + ++ NL+ NA+KFT  G  V +          +  +KD G GI       + 
Sbjct: 122 NADEFKFKHILYNLVHNAIKFTPDGRHVTIETKKCGKSMCFF-VKDTGIGILPTNQIKLF 180

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             F Q   +      G+GLGL I +  +  HGG+  I S++ +G      +P
Sbjct: 181 EQFYQVDSSTTRKYGGIGLGLNIVKKFVEIHGGKVWIESEVEKGSTFGFSIP 232


>gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
          Length = 645

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 94/358 (26%), Positives = 156/358 (43%), Gaps = 22/358 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L  +++          A+ LS     +  + +AI   
Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +   +TR+ A
Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-- 360
            +IN+ILD SRIE    ++     +L ++V          A ++N+ +   I P L +  
Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLETMN 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416
           V  D   +RQ+++NL+ NA+KFT   G+V V   W        + +  ++D+G GI    
Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTER-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++  +F Q   +I     G GLGLPIA+++    GG     SK   G      +P 
Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESKEGSGSLFTLQIPL 493


>gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 764

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 6/244 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + R+ A     AK  FL++MSHE+RTPLNAILGF  ++  E +       ++ Y+ 
Sbjct: 141 QKLIDARQEALRAAQAKEYFLSNMSHEIRTPLNAILGFVNLLMDEDISN----KHRNYLD 196

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SG++LL++IN+ILD S++ +G + +     SL + +   + +    A  K+I I  
Sbjct: 197 IILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITS 256

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            IDP +   ++ D   ++Q++ N LSNA+KFT +GG + V       +   IS+ DNG G
Sbjct: 257 FIDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASC-HNQQLTISVNDNGVG 315

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++  +  +F Q   +    ++G GLGL I+  +     G+  + SK+ EG      
Sbjct: 316 INKEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLD 375

Query: 472 LPNT 475
           +P  
Sbjct: 376 IPVE 379


>gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 616

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 20/355 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201
            L +    +AL  F +  +  +    ++  L T  I++  +L     G+++      FF 
Sbjct: 15  VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I   L KS +++     +   L  +     +         E+ N  KS  +A++SHELR
Sbjct: 75  LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+G S ++    +     E  +EY+  I+ S   L ++ ++I+DL +I++ R EL
Sbjct: 128 TPLNGIIGLSRILLEGEL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
               I    ++ +      L A++  I+        L + ++ D   + Q++ NL+SNAV
Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG ++++V          S+KD G GI + E   V   F Q   + +   QG G+
Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GL I++ I    GG   + S++ +G      +         P +  +S +   +A
Sbjct: 304 GLAISKRIAKLMGGDLTLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352


>gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
          Length = 937

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 25/367 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182
           L+      P  L  YK    L+A  +  L   +    VF      P+    +  Q + + 
Sbjct: 156 LMIELNNHPLELARYKILLSLVATGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236
            +    +             I   + + +   L  +   +    +L       +      
Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275

Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R +A   N +KS FLA++SHELRTPLN+I GF  ++  +      +     Y+  I 
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +S  HLL LIN +LD S+I+AG+ EL  +   L + + + + ML   A +K+I +     
Sbjct: 333 KSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
            ++   V  D    +Q++ NL+SNA+KFT   G + V V            + S++D+G 
Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI-MANHGGQFLIRSKL-----RE 464
           G++  +   +  SF QG  ++     G GLGL I++ + +    GQ             +
Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVVHLMRGQIGFEDNQERAPTEK 511

Query: 465 GVEVIAI 471
           G      
Sbjct: 512 GSTFWFT 518


>gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 822

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 3/255 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E ++ AE  +LAKS FL+SMSHELRTP+NAILGF++++       L  E  + Y 
Sbjct: 433 EEELREAKRMAEAASLAKSEFLSSMSHELRTPMNAILGFAQLLTNADNDSLG-ERQRFYA 491

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I +SG HLL+L+N+ILD++RIEAGR  LS   +    ++ E I M+   A+ + + + 
Sbjct: 492 DSILKSGNHLLSLVNDILDMARIEAGRLSLSFERVEPDQVMAEIIPMIAATAERRKVTLI 551

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I      +V AD   ++Q ++NL SNAVK+   GG V  ++         I++ D G 
Sbjct: 552 DEISGRGAPAVEADFTRLKQALINLASNAVKYNRTGGTVRFSISHGETGPVRIAVSDTGI 611

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E     V   F +   A  S  +G G+GL I + ++   GGQ    ++   G     
Sbjct: 612 GIPEKRRTEVFQPFARL-GAEASTVEGTGIGLTITKMLVEAMGGQIGFFTQENLGTTFWL 670

Query: 471 ILPNTRVLNFIPEDN 485
            +P        P   
Sbjct: 671 EIPRAASQPVAPPPA 685


>gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 597

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/268 (33%), Positives = 133/268 (49%), Gaps = 9/268 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E A     + R+ A+  N AK+ FLA MSHE+RTPLN +LG +  +    +    +E   
Sbjct: 195 ERAMKRLKDAREAADRANAAKTDFLAQMSHEIRTPLNGVLGMARGLRDTPL----DEGQV 250

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  I  SG  LL+++N++LDLS+IEAG  EL    +SL+ IV   +   +    EK I
Sbjct: 251 EMVSTICSSGDLLLSVVNDVLDLSKIEAGEIELETVDMSLVQIVDWTVSAFRPACVEKRI 310

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYI 403
            I   IDP        D   +RQ++ NL+SNA+KFT IG   + V    + G G     I
Sbjct: 311 TIESSIDPGAEGWYRGDPTRVRQILSNLVSNAIKFTQIGTVSISVRCSTSPGDGTDRVEI 370

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+   ++ T+  +F Q   +   A  G GLGLPI + +    GG+  +RS+  
Sbjct: 371 CVADTGIGVPAHKLQTIFQAFSQADSSTTRAYGGTGLGLPICRKLATLMGGEISVRSRPG 430

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G      L   R    + E    +T+ 
Sbjct: 431 CGSIFTVALRMPRTEAPLIEIAQSATKQ 458


>gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
            [Leptosphaeria maculans]
          Length = 2472

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 16/323 (4%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
               + V     +    +   + L     +       +   + + +    +    +   +A
Sbjct: 1886 LGSIYVEGPANSFTERNTQVLRLLVNQISISLANALLFKEIERVSASNEAMLEMQKRALA 1945

Query: 227  ELEVAKSLSDETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            +   A+  + E    A       EE   AKS FLA++SHELRTPLN ++G SE+++   +
Sbjct: 1946 QARAAEIKAKEAEAIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL 2005

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                N     Y   I      LL++IN++LD S++EAG+  + E  +SL + + E +  L
Sbjct: 2006 ----NGEQAGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRAL 2061

Query: 340  QLRAQEKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
                 E+ +  I +        V  D   + QV++NLLSN+ KFT  G   V   V   +
Sbjct: 2062 AYTNAERGLKTIEELYLDPEMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEA 2121

Query: 398  GRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGG 454
                 I  S+ D G GI E +   +   F Q   +   +  G GLGL I ++++ N   G
Sbjct: 2122 DDWVDITCSVIDTGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHG 2181

Query: 455  QFLIRSKLREGVEVIAILPNTRV 477
            +  + S   +G  V   L   +V
Sbjct: 2182 KVWLDSVPGKGTTVSFALRFQKV 2204


>gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1346

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 147/267 (55%), Gaps = 12/267 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ ++IL+   E +  I++ ++A    +  R  A+  + AKS FLA+MSHE+RTP+NAI+
Sbjct: 588 RAKLEILNDSLESE--ISDRKLALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAII 645

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + +     + P      ++++  ++ + + LLN++++ILD S+IEA + E+      L
Sbjct: 646 GLTRITLDSELAP----KQRDHLRKVYNASRALLNILDDILDYSKIEANKLEIERVEFIL 701

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            D++REC  +   + QEK +E+F +IDP +  S+  D   + Q++ NL++NA+KFT   G
Sbjct: 702 EDVIRECFDLFMQKLQEKELELFIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQR-G 760

Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            +H+     S   Q      S++D G G+ + +   +  +F Q   +I     G GLGL 
Sbjct: 761 EIHIRAALISENNQTLNLKFSVRDTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLT 820

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470
           I++ ++   GG   + S+   G E   
Sbjct: 821 ISKRLVELMGGALSVASEKDIGSEFTF 847


>gi|254567876|ref|XP_002491048.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
           [Pichia pastoris GS115]
 gi|238030845|emb|CAY68768.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
           [Pichia pastoris GS115]
 gi|328352426|emb|CCA38825.1| Hybrid signal transduction histidine kinase J [Pichia pastoris CBS
           7435]
          Length = 1113

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 142/322 (44%), Gaps = 24/322 (7%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIA 226
             V+        +     ++A  L + +  F  IT      +      +    E D L  
Sbjct: 400 AQVSDVDGLWKEITTNVNTMAANLTSQVRAFAQITAAATDGDFTRFITVEASGEMDALKT 459

Query: 227 ELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++        E        R+ AE  N AKS FLA+MSHE+RTP+N I+G +++     +
Sbjct: 460 KINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPMNGIIGMTQLTLETEL 519

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   +E +  +H     LL +I++ILD+S+IEA R  + + A SL   V   +  L
Sbjct: 520 TQY----QREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIAFSLRGTVFGALKTL 575

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395
            ++A EK +++  ++D S    +  D   +RQVILNL  NA+KFT   G+V +TV     
Sbjct: 576 AVKAIEKQLDLIYQVDNSFPDNLIGDSFRLRQVILNLAGNAIKFT-THGKVTLTVKKAAR 634

Query: 396 -----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         + D G GI E ++  +  +F Q   +      G GLGL I++ ++ 
Sbjct: 635 IVSNNDEKLLLEFCVSDTGIGIEEDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIH 694

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
             GG+  + S    G      +
Sbjct: 695 LMGGEIWVTSGYGAGSNFFFTI 716


>gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 852

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    KS F++++SHELRTPL++I GF+E++  + +    NE   +Y+  IH   + L +
Sbjct: 614 EAERLKSEFISTISHELRTPLSSIYGFTELMVKKQL---PNEKQAKYLETIHSETERLTH 670

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N+ LD+ R+E+G        + +  +VR+ +   +  + +   E+    D     ++ 
Sbjct: 671 LVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIAD-DARPYELFV 729

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D +  +Q++ NLLSNAVK++  GG++ V +     +   I +KD G GI    +  +   
Sbjct: 730 DCQKFKQLMSNLLSNAVKYSPRGGKITVELAH-HEQIVSIKVKDEGIGIPSDALDRLFDK 788

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +      G GLGLPI Q I+  H GQ  + S   EG   I  +P
Sbjct: 789 FYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIP 838


>gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 743

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 6/262 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             Q+   D+    E  ++LSD  R +A+  N AKSRFLA  SHE+RTPLN I+G   ++ 
Sbjct: 204 ELQSVGRDVTDRTETERALSD-ARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLL 262

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+ P        Y   +  SG+ L+ LI E+LD S+IEAG+ +L +   +L  ++ E 
Sbjct: 263 DTTLTP----EQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEI 318

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +L  RAQ K +EI   +D  L   V  D   +RQV+LNL  NA+KFTA GG   +   
Sbjct: 319 TELLAPRAQAKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEP 378

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++D G GIA      +   F Q    +     G GLGL I++ I+   GG
Sbjct: 379 GIRPNEISFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGG 438

Query: 455 QFLIRSKLREGVEVIAILPNTR 476
           +  + S+  +G      +P   
Sbjct: 439 RITLASEPGKGSTFEVAVPLAP 460


>gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 894

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 16/286 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHE 259
           +     +     +      + L A+ E A   + E     K  E+ +  KS+FLA+MSHE
Sbjct: 448 LQTQTEELQAHSVEMHLLNERLGAQKEAALIAASELENYAKELEKSSKYKSQFLANMSHE 507

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  S+++     G L  E    Y   IH SG  LLNLIN+ILDLS++EAG+ 
Sbjct: 508 LRTPLNSMLILSQILSENKQGNLTEEEQ-HYASVIHNSGSELLNLINDILDLSKVEAGKL 566

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           ++    ++L ++           A+ KN+E   ++   L   +++D   + Q++ NLLSN
Sbjct: 567 QIEMDLVNLTELPEVMEGYFSKSAESKNLEFEIEMAEDLPDMMYSDGMRLHQILRNLLSN 626

Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           A+KFT   G V ++V             SG     S++D G GIA   +  +  +F QG 
Sbjct: 627 AIKFT-ESGSVKLSVKKMNSIVTSDFIISGEVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                   G GLGL I+  +    GG   + S+   G   +  LP 
Sbjct: 686 ETTARRFGGTGLGLSISLHLAKLLGGYITVESEEGSGSIFVLYLPL 731


>gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
 gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
          Length = 586

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+N ++G +E++E   +    NE  +     +  S   LL+L+N++
Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEETDL----NEEQRMCTKTVVESSNALLSLVNDV 246

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+ +AG+  ++++   L++ +     +L   A EK+IEI   I          D+  
Sbjct: 247 LDFSKADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGR 306

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQV++NL+ NA+KFT   G V + +   T        ++D G GI   ++ T+   F Q
Sbjct: 307 LRQVLINLVGNAIKFTET-GFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQ 365

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +        G GLGL I++ ++   GG   + SKL EG E    LP  
Sbjct: 366 VNSETTRRYDGAGLGLAISKKLIELMGGTLGVTSKLGEGSEFTFALPLE 414


>gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 645

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L  +++          A+ LS     +  + +AI   
Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISAMGEALKAIQQG 211

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +   +TR+ A
Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTQMTH----EQSEYATLATESTEHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360
            +IN+ILD SRIE    ++     +L ++V          A ++ + +   I P+L   +
Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRKLLLELHIQPALEAIN 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416
           V  D   +RQ+++NL+ NA+KFT   G+V V   W        + +  ++D+G GI    
Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++  +F Q   +I     G GLGLPIA+++    GG     S    G      +P 
Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESAEGSGSLFTLQIPL 493


>gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 11/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +L V + + ++ +  AE+ + +K+ FLA+MSHE+RTP+  ++G +E++    + P   
Sbjct: 210 LQQLRVNEQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARSALDP--- 266

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  IH SG+ LL+LI+ ILDL++IEAG+ EL      +  +V  C+ +++   Q
Sbjct: 267 -EQRRLLTTIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNIQ 325

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           +K I +  +  P +   V  D   +RQ+++NLL NA KFT   G++ + V  +    Q  
Sbjct: 326 DKPIVLEAQFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEA-GKISLLVTTSGYGSQAW 384

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              SI+D G GI       +   F Q          G GLGL I ++++    G     S
Sbjct: 385 LDFSIRDTGIGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFTS 444

Query: 461 KLREGVEVIAILPNT--RVLNFIPEDNHES 488
           +   G      LP     V     +D+H +
Sbjct: 445 EPGVGSTFSFSLPLALFSVSEIPIKDDHAA 474


>gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
 gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
          Length = 935

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/269 (35%), Positives = 150/269 (55%), Gaps = 10/269 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           IA L V  ++  +   RAE EN AKS FL+ MSHE+RTP+NAI+G + +I ++   P   
Sbjct: 536 IASLRVKNAIMQKDVIRAEAENKAKSEFLSRMSHEIRTPMNAIVGTTALIAMKDDIP--- 592

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E+ K  +  +  + Q+LL LIN+ILD+SRI+ G   ++E   SL  ++ E   M+Q +++
Sbjct: 593 ESIKGNLAKLKATSQYLLGLINDILDMSRIDNGMLSIAEEDFSLQQLLDELCSMMQSQSK 652

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
            + I +  +     S +  D   ++QV++NL+SNA+KFT  GG VH+TV  T+       
Sbjct: 653 AREIALCCETGFRHSDLKGDAIRLKQVLMNLVSNAIKFTPPGGTVHLTVEETAATDLQAV 712

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI   ++  +  SF Q         QG GLGLPI+Q+I+   GG   ++S
Sbjct: 713 YLFKVTDTGIGIRAEDLERIFESFVQTGANRMR-SQGTGLGLPISQNIVQLMGGTLRVKS 771

Query: 461 KLREGVEVIAILPNT--RVLNFIPEDNHE 487
           K+ EG E    +P +  + ++  PE   +
Sbjct: 772 KINEGSEFSFSIPLSFGKHIDLKPESATD 800


>gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
 gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
          Length = 1119

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 44/377 (11%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              ++ L    ++   +  + +S   ++ ++++ ++       +                
Sbjct: 564 VMAVIELASFHSFDEVHRALMESLMEMVGVTVNTITANTRTEELLG-------------- 609

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
                    LA  L             L +SN ++            ++EV  S  ++ R
Sbjct: 610 -----ESRRLADELKARTDELQMQQKELRRSNAELEEKAELLARQNQDIEVKNSEIEQAR 664

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  EE        +  KS FLA+MSHELRTPLN++L  + ++     G L  E   EY  
Sbjct: 665 QELEERANQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNLT-ERQVEYAE 723

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IH +G  LL LIN+ILDLS+IEAGR ++  + I++  +V       + + ++K +E+  
Sbjct: 724 TIHGAGSDLLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQKGLELRV 783

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------------- 398
           ++ PS+   ++ DE+ ++QV+ NLLSN+VKFT   G V + V                  
Sbjct: 784 RVAPSVPAHLFTDEQRLQQVLRNLLSNSVKFTET-GHVELVVDTVGDVVLGGPEDSNEVT 842

Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++ D G GI + +I TV  +F Q          G GLGL I++ I    GG  
Sbjct: 843 LEPAVSFAVSDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAKLLGGGI 902

Query: 457 LIRSKLREGVEVIAILP 473
              S+   G      LP
Sbjct: 903 RAESQRGRGSTFTLFLP 919


>gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1419

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 6/317 (1%)

Query: 161  YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-YHLFKSNVKILSCQA 219
                ++ +P +  +  +      +    +    +      ++     L +++ + +    
Sbjct: 963  LLARIARYPHLAPIYRRYDFQSWIALPLVVESKSVGGLLLSFQEFKQLSQADREFILALT 1022

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +               + R  AE+ N  K  FLA +SHELR+PLN ILG++++++ +  
Sbjct: 1023 RQCAQAIVRAQLYEAERQARAEAEQANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPF 1082

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             P   +   + +  I R+ +    LI ++LD+SRI  G+  L+ ++++L+ ++   +  +
Sbjct: 1083 SP---DKAAKALATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETV 1139

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +L A+ K I++   ++P +  +  D   ++Q++ NLL+N VKFT  GGRV V +      
Sbjct: 1140 RLSAETKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRV-DT 1198

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               + ++D G GI    +P V   F Q          G+GLGL I + +   HGG     
Sbjct: 1199 FAQLQVQDTGKGINAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAAD 1258

Query: 460  SK-LREGVEVIAILPNT 475
            S     G      LP  
Sbjct: 1259 SPGEGLGATFTIRLPLQ 1275


>gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1119

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 133/260 (51%), Gaps = 10/260 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   I+E +  +    + +++AE+ +  KSRFLA+MSHE+R+PLNAILG  E++  
Sbjct: 466 LFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLD 525

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            ++    ++  + +      +G  LL+ IN+ILD S+IEAG+  L         +V + +
Sbjct: 526 SSL----SKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVL 581

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +L+ +A EK +E+   ++ ++   V  D++ +RQV+ NL+ NA+KFTA  G + V +  
Sbjct: 582 QILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTAS-GTITVEMWI 640

Query: 396 TSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                  +     + D+G GI+      +   F Q      +  +G GLGL I   ++  
Sbjct: 641 PDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITM 700

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG   ++S+L +G      
Sbjct: 701 MGGTIELQSELGQGSRFTFY 720


>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
 gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
          Length = 1963

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 176/424 (41%), Gaps = 35/424 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  L V ++ +        L +        L +     +L  + ++
Sbjct: 1202 FRPGETLVGTAAREKRVLTVNKVPVDYIKISSGLGQATPAQVVVLPLLFEGKVLGVIELA 1261

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206
              + F      FL+    ++A S   I       + L                       
Sbjct: 1262 TFAQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1321

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
            L +SN ++    A      +++EV     +  R+  EE           KS FLA+MSHE
Sbjct: 1322 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1381

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L+++   E+   I+ +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1382 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1440

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            E+S + I+L+ +V       +    EKN++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1441 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1500

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    +                    ++    G+    S+ D G GIAEG++ 
Sbjct: 1501 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1560

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP     
Sbjct: 1561 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPLHPGD 1620

Query: 479  NFIP 482
               P
Sbjct: 1621 VPAP 1624


>gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
 gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/256 (36%), Positives = 152/256 (59%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      ++ AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 860  RDITQWKRTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPI 919

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             N  Y EY GDI RSG+H+L+++N++LD+S+IEAG  EL  SA+ L + V E + ++Q +
Sbjct: 920  GNPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQPQ 979

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  S+  V AD + ++Q+ LN+L+NA++FT  GG++ V+  + +     
Sbjct: 980  ANSQRVIIRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSVI 1039

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + I+D G G+   E+   +  F Q +   +   +G GLGLP+ +++   +  QF I S  
Sbjct: 1040 LRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSAP 1099

Query: 463  REGVEVIAILPNTRVL 478
             EG  V    P+ RVL
Sbjct: 1100 NEGTLVEISFPSQRVL 1115


>gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
 gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
          Length = 1311

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 10/258 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E  +++     +KSRFLA MSHE+RTP++ IL   E++E         
Sbjct: 655 ITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTT--- 711

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++   ++ +SG++LLN++N++LD S+IEAG+  ++ S  ++ D++ E +    + AQ
Sbjct: 712 -ELRQIHHNLSQSGRNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQPHSIHAQ 770

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
           +K I     +DP+++  +  DE  + Q++ NL++NA+KFT   G +H+ V         +
Sbjct: 771 QKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKFTVQ-GNIHLAVDMIQESASQQ 829

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               SI D G GI   ++  +   F Q          G GLGL I   +    GG+ + +
Sbjct: 830 RLTFSIIDTGIGIKPEDLQRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMGGEIVAK 889

Query: 460 SKLREGVEVIAILPNTRV 477
           S +  G      +P   V
Sbjct: 890 SDINIGTTFSVTIPFPVV 907


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 9/239 (3%)

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA+MSHE+RTPLNAI+G S ++    + P      + Y+  I  SG  LL ++ +ILDL
Sbjct: 1103 FLANMSHEIRTPLNAIIGMSGLLLRTNVTP----EQRSYVSAIQSSGNALLEMLADILDL 1158

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
            SRIE G+ EL  S  S+++ V  CI +L ++A EK IE+   ID  +   V  D   +RQ
Sbjct: 1159 SRIEEGKLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDEDVPELVLGDATRLRQ 1218

Query: 371  VILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            V++NLL NA+KFT  G   + V   +        +  ++D G GI   ++  +  +F Q 
Sbjct: 1219 VLVNLLENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQV 1278

Query: 428  SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              +I     G GLGL I++ ++   GG+    S    G      +   RV     E + 
Sbjct: 1279 DSSITRRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGSTFHFTI-KARVSERSQERSD 1336


>gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1148

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 194/469 (41%), Gaps = 21/469 (4%)

Query: 20  GDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT 79
            +          +    +      + F  + +  L   L   +  ++ ++     +  + 
Sbjct: 274 RERRRALNAELAELSIALQLAASPAAFADALLNFLAPQLSMGLALFYVRDAGGETFQAVG 333

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
                  ++L +     +   G+    R  ++V  +          L          + +
Sbjct: 334 GYACDPGVALRESFAIGEGLPGQCVASRRTIIVEGLPTTTRVIGSGLTSGPPDIVVCVPV 393

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
             +  +L  L  +    F   +   L     +V L+   ++  ++  ++L          
Sbjct: 394 SSAEGVLGVLEFARYGAFEDSHKELLDLAMPIVGLNLG-LLQRNLKTVALLERTRLQAEE 452

Query: 200 FTYITYHLFKSNVKILSCQA----EKDDLIAELEVAKSLSD---ETRKRAE-------EE 245
               T  L  S  ++   +       D L+ + +  ++ ++     R+ AE       E 
Sbjct: 453 LRAQTDELQASEEELRLQREELQIANDRLVEKKQRLEAQAEDLAAARRDAERQVEELAEA 512

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS+FLA+MSHELRTPLN+IL  ++ +  +      +  + E    I  SG HLL LI
Sbjct: 513 SRYKSQFLANMSHELRTPLNSILILADTLADDD---ELDAEHTESAKVIGESGHHLLALI 569

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364
           N+ILDLS+IEAGR EL E ++ + D +          A  K + +  +  P   SV  AD
Sbjct: 570 NDILDLSKIEAGRLELVEESVRIDDALASIARTFAAPADRKGVALTVETAPGAPSVIRAD 629

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + + QV+LNL+ NAVKFT   G V VT       G   S+ D G GIA  +I +V T+F
Sbjct: 630 GRRLIQVLLNLVGNAVKFTDR-GEVRVTASPM-DGGVRFSVSDTGVGIAPNQIESVFTAF 687

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q          G GLGL I++ ++   GG+  ++S L +G     ILP
Sbjct: 688 QQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQSILGQGSVFSFILP 736


>gi|332532002|ref|ZP_08407886.1| histidine kinase response regulator hybrid protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038629|gb|EGI75072.1| histidine kinase response regulator hybrid protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 725

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 122/270 (45%), Gaps = 11/270 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVA---KSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           L K  +  L  +     L   L+         +E +K A+  N  K RFLA+MSHELRTP
Sbjct: 150 LGKEVIAQLELRLNNRKLATALKQQQTHNKNLEELKKEADTANTLKGRFLANMSHELRTP 209

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ IL  +E      +   +N      +  I  S   L N++N+ILD S+IEAG+  +  
Sbjct: 210 LHGILNLAEF----GLAETSNIEKDNALKSILSSANILSNIVNDILDFSKIEAGKLNIEN 265

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              +L +++   I  L  +A +K I+    ID ++++ +  D   + Q++ NL SNA+KF
Sbjct: 266 INFNLSEVINNVINPLMKQATDKGIKFIPSIDKNIATTLKGDPVRVSQILNNLCSNAIKF 325

Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G    +V V     + +     I D G GI++     +   F Q   +      G G
Sbjct: 326 TQQGQVEFKVTVKENLLNTQNIVFEIIDTGIGISKAAQQNLFQEFHQADSSTSRKYGGTG 385

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           LGL I   +     G+    SK  +G    
Sbjct: 386 LGLSICTKLSDLMNGKINFTSKEDKGSVFT 415


>gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
 gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
          Length = 353

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 14/350 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +   A  L    ++        Y    SF  + V+     I+      +     +   L
Sbjct: 8   FLNALAVSLSIGIVNYYFQHSWFYFAITSFISLFVSFIVFYILMEK--YVYSKIKIIYKL 65

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS---LSDETRKRAEEENLAKSRFLA 254
                +   L  +  + +S     D      E AK      DE ++ A    + +  FL 
Sbjct: 66  IHSLKLGKDLKDALGEYVSPDPINDVEQEVKEWAKEKKIEIDELKREA----IFRKEFLT 121

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHEL+TPL +I G+ EV+E   +   + E  + ++  I  +   L  LI ++ ++S++
Sbjct: 122 NLSHELKTPLFSIGGYLEVLEDSDLT--DVEETQRFLKKISNNVDRLSILIKDLDEISKL 179

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           E+G   L+     +  +++E + +++L A++ +IE+  K    + + V AD   +RQV++
Sbjct: 180 ESGEIPLNIKKFDITVLIKEVLELMELEAEKHHIELLFKQKYDVPTFVMADRDKIRQVLV 239

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ N++K+    G   VTV     +   + + DNG GI E  +  +   F +   +   
Sbjct: 240 NLIGNSIKYGKENGTTFVTVFEMHDQ-ILVEVTDNGIGIEEKNLKRLFERFFRTDFSRSR 298

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIP 482
              G GLGL I + I+  H     +RS    G      L   +  L+ IP
Sbjct: 299 NIGGSGLGLAIVKHIVEAHDQAINVRSTPGIGSTFGFTLQKAKTPLSTIP 348


>gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1043

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 8/258 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E    I   + A+    + ++ A + N AK  F++ MSHE+RTPLNA++G S ++  + 
Sbjct: 646 VEVLIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIED- 704

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                + + +E +  +  S  +L+ LIN++LD +++E G  EL ++ +++ ++V   +  
Sbjct: 705 ---NPSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNS 761

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396
           LQ +A+ K+I I   ID  L   +  D+  + Q++LNL+ N+VKFT  GG  + + +   
Sbjct: 762 LQYKAEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQ 821

Query: 397 SGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           +     I   + D G GI   ++ TV  SF Q          G GLGL I + ++  H  
Sbjct: 822 TAGQVRIRFEVSDTGIGIPPDKLNTVFESFKQAQTDTTRLYGGTGLGLAITKRLIELHDS 881

Query: 455 QFLIRSKLREGVEVIAIL 472
           +  + S      +    +
Sbjct: 882 RINVESVYGHSSKFWFTI 899


>gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
 gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
          Length = 466

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  H    +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWIGRKIIIA----ITKPLSQMERVANHFATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    ++       E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMA----HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 444 ESEKGKGTTVFIKL 457


>gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 672

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDE------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             I E   A+ +  E       R++AEE +  K  FLA +SHELRTPLN+ILG+++++  
Sbjct: 264 RDITERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRA 323

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                ++ +     +  I R+ +    LI ++LD+SR+  G+  L    + L  ++   +
Sbjct: 324 RR---IDEKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAV 380

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             +Q  A  K I++  +ID ++  V  D   + Q+  NLL+NAVKFT  GG V V +   
Sbjct: 381 EAVQPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQG 440

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
               Q + ++DNG GI+   +  +   F Q          G+GLGL I + ++  HGG  
Sbjct: 441 EIHAQLV-VRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTA 499

Query: 457 LIRSK-LREGVEVIAILPN 474
              S    +G      LP 
Sbjct: 500 AAESAGKGQGATFTVRLPL 518


>gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
 gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
          Length = 920

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 155/376 (41%), Gaps = 22/376 (5%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI- 179
           W ++T       T    + +    L  A+ I  +  F+   +  L    + +        
Sbjct: 411 WQVITFYNRKHLTKVVASAWLPTILFSAVLIFLVVLFIHHLSNLLVQPIIGLTNLMHGFD 470

Query: 180 --MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD- 236
                H    S    +      F  +   L  S   + +   +  DL  +L       + 
Sbjct: 471 KSEKQHFNTESSWYEVLQLQEQFKMLGSALRDSIESLQASNIKNQDLNKQLSQFNQQLEV 530

Query: 237 ----------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                     +  K A E N AKS+FLA+MSHELRTP+N ILG  EV+          + 
Sbjct: 531 KVAEQTDELTKAVKSANEANKAKSQFLANMSHELRTPMNGILGMGEVLLR---DSTLTDE 587

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++ +    +S ++LL ++N+ILD S+IEA   ++S  A  L   +     +        
Sbjct: 588 QRDLLETQQKSSKNLLQILNDILDFSKIEANAMQISPRATLLAPFIENIHSLFSPIIHSN 647

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           N+E   +  P L   +  D+  + Q+I+NLLSNA KFT   G V ++  +   +   +S+
Sbjct: 648 NVEFIIQRSPDLPDCLNVDDLRLNQIIINLLSNAQKFTQA-GFVRLSFDYKDEQ-LTVSV 705

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI + +   + + F Q   ++     G GLGL I Q ++    G+  + S    G
Sbjct: 706 SDSGIGIEKEQQLLLFSEFTQADASVARKYGGTGLGLAICQGLIKKMEGEITLNSVPGLG 765

Query: 466 VE--VIAILPNTRVLN 479
                    P  ++++
Sbjct: 766 STIKFSIHAPKAQIVD 781


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 9/253 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            E +KRAE     + AK+ F  ++SHE RTPL  +LG  E +  +    L   TYK+ I 
Sbjct: 327 QEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQD--TALQESTYKQPIE 384

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             HR+   LL L+N +LD SRIEAGR + S   + L+ +  +     +   +   +E+  
Sbjct: 385 ATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLELSV 444

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             +P  + V+AD +   +V+LNLLSNA K+T   G + V +   +     + + D G GI
Sbjct: 445 DCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLK-GHIGVQLTAEADG-VVLRVSDTGVGI 502

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              E+P +   F + + A     +G G+GL +   ++  HGG   + S+  EG      L
Sbjct: 503 PAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFTVRL 562

Query: 473 PNTRVLNFIPEDN 485
           P  +  + +P+D 
Sbjct: 563 PLGK--DHLPQDQ 573



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 108/280 (38%), Gaps = 30/280 (10%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +     L  +++   +    +    +  N    +F    SH+L+ PL  I  F ++++
Sbjct: 878  RYRQLSTALDEQVQQRTAELQASIHDLQRSNDNLQQFAYVASHDLQEPLRKIQSFGDLLK 937

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             +    L      +Y+  +  +   +  LI ++L  SRI   +       +SL + +   
Sbjct: 938  NQYADNLG--EGIDYLKRMQTAANRMSTLIRDLLSFSRITTRQEV--TETVSLAETLSMV 993

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-------- 387
            ++ L++  QE   E+       L +V  D   + Q+  NLLSNA+KF             
Sbjct: 994  VLDLEVMIQETGAEMRIHP---LPTVLGDRSQLIQLFQNLLSNALKFRRKSSAGVSVPPV 1050

Query: 388  -------------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
                            V    +      I + DNG G  E  +  +   F +     KS 
Sbjct: 1051 VEVSAQLVNVSELPSTVRPTRSVAAYYRIDVTDNGIGFNEKYLDRIFQVFQRLHG--KSE 1108

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             QG G+GL I + ++ANHGG    +S+  EG      LP 
Sbjct: 1109 FQGTGIGLAICEKVVANHGGVITAQSQPGEGATFSVYLPA 1148


>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
 gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
          Length = 988

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 321 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 378

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 379 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 438

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 439 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 491

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 492 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 547

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 548 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 607

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 608 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 666

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 667 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 726

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 727 TVALPLREA 735


>gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1560

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I EL   K    +  ++A+  + AKS FLA++SHELRTPLNA++GFSE+++    G +  
Sbjct: 1164 ITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQ---GGDVAA 1220

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                EY+  I  +G  LLNLI ++LDLS++EA +  L  +      +V+E + + +L+A 
Sbjct: 1221 AEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAVFRLKAM 1280

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399
            EK++++  +       +  D   +RQV+LNL+ NAVKFT+  G V V   +         
Sbjct: 1281 EKDLKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSA-GSVSVRAVFQPDPGGETG 1339

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D GPGI+      +   F QG       + +G GLGL I+Q ++   GG+  +
Sbjct: 1340 MLIIRVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRMGGEIRL 1399

Query: 459  RSKLREGVEVIAIL 472
             S+L  G      +
Sbjct: 1400 ESELGSGSVFTVRI 1413


>gi|255526178|ref|ZP_05393098.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185072|ref|ZP_06853482.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255510161|gb|EET86481.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296049906|gb|EFG89330.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 606

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASM 256
           F++     L      I+    +  +     E+ KS+  E  +  E  E +  K+ F A++
Sbjct: 293 FYSGYIGRLSDGRNIIIRVAMDITEKKHMEELQKSIEKERMRLLEIKEYDRIKTDFFANI 352

Query: 257 SHELRTPLNAILGFSEV----IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           SHELRTP+N I    +V    ++         + YK YI  + ++   LL L+N ++D++
Sbjct: 353 SHELRTPINVIFSAIQVHKLKLKDCNFNDNFPDKYK-YINIMEQNCYRLLRLVNNLIDIT 411

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +I++G   ++E    ++ ++ +  + +    + K + +    D     +  D + M ++I
Sbjct: 412 KIDSGYLVINEINCDIVSLIEDITLSVADYIENKGLSVVFDTDIEEKIIACDPEKMERII 471

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNLLSNAVKFT  GG + V +         I +KD G GI + ++ ++   F Q   ++ 
Sbjct: 472 LNLLSNAVKFTLRGGSIFVNIE-NGTESICIRVKDTGKGIPKEKLDSIFERFVQVDKSLT 530

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              +G G+GL + ++++  H G   + SK   G E I  +P   V
Sbjct: 531 RENEGSGIGLSLVKALVELHEGTISVNSKEGYGSEFIIHIPCKLV 575


>gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
 gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri]
 gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
          Length = 744

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 17/327 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L      S       L   A++   + +  +   L + L +   ++ +  +S  +     
Sbjct: 273 LEQRFIYSVVLSFFVLIAIAVLIRGLFEHKILLSLNSLLKYTNTVSKNETRSEYQGCGIL 332

Query: 219 AEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            E D +  +LE   S   E +       + AE+    KS FLA MSHE+RTPLN ILG S
Sbjct: 333 -EFDQIGEKLEQTFSELIEAKEDSYKAQRAAEKLAQVKSDFLARMSHEIRTPLNGILGIS 391

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++   +    N   ++ +  +H+ G+HLL ++N+ILD S+IE  + +++ +   L D+
Sbjct: 392 SLLKSSNL----NREQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDV 447

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     +     + KN+    +   +    + +D+  + Q++ NLLSNAVKFT   G+V 
Sbjct: 448 LENINAIYFPICKNKNVFFSIENHVNPDVFINSDQVRLTQILFNLLSNAVKFTEK-GKVK 506

Query: 391 VTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +T+        Y    S+ D G GI   E   +   F Q   +      G GLGL I + 
Sbjct: 507 LTLSLNKHNSDYYLQFSVDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGLGLAIVKQ 566

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           ++    G+  I S +  G     ++P 
Sbjct: 567 LLDLLKGKITINSTIGVGSTFSVLIPV 593


>gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 507

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 2/243 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E +  +      +  AE+ N  KS F+A+MSHELRTPLNAI+GFSE++  +  G L
Sbjct: 267 EDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIGFSEILIEKKFGDL 326

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+   +Y+ +I  SG+ LL +IN IL++S+IE+G  E++   ISL D++ +    ++ +
Sbjct: 327 -NDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLGDLIEDLKEDIKEK 385

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             ++   +  +I  ++ ++  D   + + +L+L+ NA+KF+     V V++         
Sbjct: 386 LPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHVEVSLESV-DEMIA 444

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G GI E +I  +   F Q   +      G+G+GL I + I   HGG   I+S+L
Sbjct: 445 FKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAELHGGGLAIKSEL 504

Query: 463 REG 465
            +G
Sbjct: 505 EKG 507


>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 549

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +  ++   S    +R+ A+  N AKS FLA+MSHELRTPLNAI+GFS+ + +   G  
Sbjct: 294 RQLERMDRTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGIPGHT 353

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+G +  S +HLL+LIN+ILDLS+IEAG  E++ +   L  ++ EC+ +++ +
Sbjct: 354 CQSRCQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEIVRAK 413

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+ KNI +          V  D + +RQ++LNLLSNAVKFT  GGR+ +     SG+   
Sbjct: 414 AESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAECDSGQLA- 472

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +++ D G G+ + EI   LT FGQ    +   E G GLGLP+++ +    GG   + S  
Sbjct: 473 LTVNDTGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVTSIP 532

Query: 463 REGVEVIAILPNTRVLN 479
             G  V   LP +R L 
Sbjct: 533 GRGTTVTISLPLSRPLP 549


>gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 466

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 149/352 (42%), Gaps = 15/352 (4%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           +  V   +   EY+    S    +   +  L   +L       F   + A      ++  
Sbjct: 127 MLYVARMSSNGEYIFRLASPYSGMQEYLIMLLPAVLLSFAIAFFASSMEAERFSQSITRP 186

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           + DIS              +       +      Q E + +            E  +R E
Sbjct: 187 LQDISRE---------MMKVDGDYADLHFDRCPYQ-EINVIADTTTKMSRNVKEYLERLE 236

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +E   +  F ++ SHEL+TP+ +I G+ E++E      LN ET  +++  I +    + +
Sbjct: 237 QEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETTHDFLKRIKKEAMRMTS 294

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+++IL +SR+E+   +     I + D++ E +  L  +A E+ + I ++ +    ++ A
Sbjct: 295 LVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHKQFES--FAIRA 352

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + M ++ +NL+ NAVK+    G + V     +     ++++D+G GI +  +  +   
Sbjct: 353 DLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFV-LAVRDSGVGIPQESLNRIFER 411

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +        + G GLGL I + ++  + G   + S++ +G      LP  
Sbjct: 412 FYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLPVA 463


>gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter
           turnerae T7901]
          Length = 757

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 8/285 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKSRF 252
           T + +   I+  +    + +        +LI E EV K      +    A   N AKS F
Sbjct: 476 TLVLWLELISGSVVVILIGLFMVFIMNRNLIVEKEVRKKTQELTQALDDARHANSAKSLF 535

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LASMSHELRTPLN+I+GFS  +        + ++Y+  +  I R+G+HLLNLIN+ILDLS
Sbjct: 536 LASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKSYRS-LEVIERNGRHLLNLINDILDLS 594

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           ++EAG+  +    +SL  ++ E +  L   A+ K + +  K+   +++V+AD+K + QV+
Sbjct: 595 KVEAGKMSIDREWVSLKTLLDETVTSLTPLAESKGLTLELKM-VEVANVFADQKRLAQVL 653

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           LNL+SN +K+T+ GG + ++    S     G  I + D G GI   +I  V   + Q   
Sbjct: 654 LNLVSNGIKYTSTGG-ISISSRRESREGHEGVAIDVVDTGVGIKPEDIDRVFRRYEQLDE 712

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              S+E G GLGL +A+ ++  HGG+  + S+  EG      LP 
Sbjct: 713 PSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYGEGSCFTCWLPL 757


>gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 627

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + +F++++SHELRTPL ++  + E +        + +   E++         ++ +I
Sbjct: 380 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 437

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355
           N++L LSR+++G  +L    +++  +V   +    +  ++  I           I +   
Sbjct: 438 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFT 497

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NA+K++  GG +   +  T      +SI D G GI + 
Sbjct: 498 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 556

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  V   F +   A   A+ G GLGL I++ ++  H G+  + S   +G      LP  
Sbjct: 557 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 616

Query: 476 RVLNF 480
                
Sbjct: 617 EYSEE 621


>gi|190344318|gb|EDK35970.2| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G +++  
Sbjct: 3   ALKTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 60

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   
Sbjct: 61  --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 118

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK++++  + D S    +  D   +RQVILNL  NA+KFT  G        
Sbjct: 119 LKTLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKK 178

Query: 395 WTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +            + + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 179 SSKVVEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 238

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
           +   GG+  + S    G      
Sbjct: 239 ILLMGGEIWVTSDYGSGSNFYFT 261


>gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1039

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 12/322 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                +    + P + A+    +      DI    M       +T++   + + +    +
Sbjct: 568 AEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHL-RAVGRVDEGSGA 626

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   + E +  +    E + +A   N AK  FLA+MSHE+RTPLN I G   ++  
Sbjct: 627 LVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLAD 686

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            ++ P      +E      RS + L +L+ ++LD+SRI+AG+ E+      L   +R+  
Sbjct: 687 ASLAP----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVR 742

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +    A +  + +   ID ++   V  D   ++QV+ NLL NA KFT   G V +    
Sbjct: 743 ELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEK-GSVTLRAEH 801

Query: 396 TS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            S           S++D G GI + +   + T F Q     K + QG GLGL I + I+ 
Sbjct: 802 LSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIR 861

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
             GG     S+   G  V   L
Sbjct: 862 VMGGHLAFESEAGTGTTVYFTL 883


>gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria
           innocua FSL S4-378]
          Length = 254

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 29  RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 86

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI++          +   D   
Sbjct: 87  LALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRDK 146

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 147 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 205

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 206 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 253


>gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 929

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/270 (36%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  + +++   L+        I +   A       ++ A+  + AKS+FLAS+SHELRTP
Sbjct: 428 SVRVVRNSAGELARFEGVAIDITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTP 487

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ILG+++++      PL  E  +E I  IH S +HLL LIN++LDLS+IEAGR EL  
Sbjct: 488 LNGILGYTQILRR---DPLLGEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHP 544

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              +L +       +   RA+EKN+ +   + P L   V  DE  +RQV+ NLL NAVKF
Sbjct: 545 GDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKF 604

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           TA GG V  ++  ++G G   S+ D G GIA  ++  +   F Q   +  +A  G GLGL
Sbjct: 605 TAQGG-VVFSISSSAGGGLRFSVSDTGRGIAAADLSRIFEPFTQVGESTGAAT-GTGLGL 662

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I++S++   GG+  + SK   G      L
Sbjct: 663 AISRSLVERMGGRLQVESKPGWGSRFWFDL 692


>gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 962

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +    +    A+  N AK+ FLA+MSHE+RTP+NAI+G + +         +N
Sbjct: 247 ISSQKAIEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALET----QDN 302

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  + +S   LL L+N ILD S++EA + ++ +   +L   + +   + Q++AQ
Sbjct: 303 DQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQVKAQ 362

Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +++       +      D + + QV+LNLLSNA+KFT   G V + +    G     
Sbjct: 363 QKQLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTET-GHVLLKIDKR-GNELGF 420

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI++     +  +F Q   +I     G GLGL I + ++   GG+  I SK+ 
Sbjct: 421 SVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIESKVN 480

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
           EG      LP   + +  P D+
Sbjct: 481 EGTNFAFSLPI-CIEDTEPSDS 501


>gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1816

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E    +         A+  + AKS FLA+MSHELRTPLNA++GFSE++  +T+     
Sbjct: 1413 ITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELLRNDTL---PR 1469

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                EY+  I+ +G  LL LIN+ILDLS+IEAG+  ++        + RE   + +L+A 
Sbjct: 1470 SEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIYSIFRLQAA 1529

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG--RGQ 401
            EK +E   + DP L  ++ D   +RQ++LNL  NA+KFT  G  R+ +     S      
Sbjct: 1530 EKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRPESDEAGTL 1589

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D G GI+E    T+   F Q        A QG GLGL I+  ++   GG+  + S
Sbjct: 1590 TIRVIDTGIGISEQGQKTIFEPFVQDHEVRGSHAYQGTGLGLTISSRLIGQMGGRMALDS 1649

Query: 461  KLREGVEVIAILPNTRVLNF-IPEDNHEST 489
            K+ EG     IL + R     +PE   ++ 
Sbjct: 1650 KVGEGSCFTVILEHVRYERTGLPEAAEKAP 1679


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 20/377 (5%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS-------ALSNFMLPYAVF 164
           V          +   +       +    +  A  ++  + +       AL+   +     
Sbjct: 224 VLAALSASPLDVPFALLYLRTKEDGPVTFAGAVGVVWEAAASPWPLEQALAGETVRVDDV 283

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P+      + + S  ++ I+ +G  A        I+    ++  +  +   E    
Sbjct: 284 ARHLPLAGGPWGEPVTSALLMPIASSGQGAPLGVLVVGIS--PNRALDEGYTSFYELLAS 341

Query: 225 IAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETM 279
              L +  + + +E RKRAE   E + AK+ F +++SHE RTPL  +LG  E V+   T+
Sbjct: 342 QVSLALRNAQAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTL 401

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E     +  +HR+   LL L+N +LD SR+EAGR E S   + L     +     
Sbjct: 402 ----PEAAARELDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSF 457

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A+   + +     P  +  + D +   +++LNLLSNA KFT   G + V +   +G+
Sbjct: 458 RSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQ-GTITVRLRARTGQ 516

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++ I D G GI   ++P +   F +   A     +G G+GL + Q +    GG+  + 
Sbjct: 517 -AWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVE 575

Query: 460 SKLREGVEVIAILPNTR 476
           S   +G     +LP  R
Sbjct: 576 SVEGQGSCFTVVLPEGR 592



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 16/334 (4%)

Query: 144  TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             +L  + +  L  F L   +        V +   +  +     +      A       + 
Sbjct: 696  LILTDVMMPRLDGFGLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFS 755

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-EEENLAKSRFLASMSHELRT 262
               L       L     +          +S   E R  A +     +  FL+  SHEL+T
Sbjct: 756  ARELVARVCSTLELSRMRR---------ESSLQEARAEALKRAVQVRDEFLSIASHELKT 806

Query: 263  PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
            PL A     E+IE   +GP +  +    +    R  Q L  L+  +LD+S++  GR  L 
Sbjct: 807  PLMAFRLQLELIERS-LGPESRLSLASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLH 865

Query: 323  ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
               + L ++V E +  L+   +     +  +++  L   + D     +V++NLL NA+K+
Sbjct: 866  LEEVDLAEVVGETVEQLRGSLERAGCSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKY 924

Query: 383  TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
               G  + V   W       +++ D G GI+  +   +   F +          G+GLGL
Sbjct: 925  -GEGKPLRVRA-WKEQGISRLTVADQGMGISPEDQARIFERFERAVPG--RQYGGLGLGL 980

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             IA+ ++  HGG   + S   +G      +P  R
Sbjct: 981  WIARQVVEAHGGHIQVDSTPGQGTTFTVQIPQNR 1014


>gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 467

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 155/348 (44%), Gaps = 11/348 (3%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                  P    +  +  +   + ++      +   V  S   V +A +   ++S+ V  
Sbjct: 124 FFTDPRDPSLDIMMGATRVSDKVLLAFFPVADVREPVRESIMLVWLAAAGAFLISI-VPA 182

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
             ++      L     +   + K +  +    A +D++        +++ +     E  +
Sbjct: 183 YLISRHFTRPLEEMGQLALRMGKGDFSVRFHTARQDEIGQLARTLDAMAAQ----LEAID 238

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  FLA +SHELRTPL +I GF + +     G +  E  + Y+  +    + L  L++
Sbjct: 239 RERQEFLAYVSHELRTPLTSIRGFVQGMLD---GTIPPEKQQSYLARVFSETERLRRLVD 295

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L R+ +G++  +     L  ++     ++   A EK +++  +    L  V+ADE 
Sbjct: 296 DLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFRTQGELP-VYADEG 354

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + QV +NL+ NA+KF+  GGRV V    T      + + D GPGI   E+P +  SF  
Sbjct: 355 RLVQVFMNLVDNAIKFSPPGGRVLVEAEKT-DGLLRVQVTDEGPGIPPEELPRIFDSFYS 413

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G  A   +E G GLGL I++ I+  HGG   +R++   G     +LP 
Sbjct: 414 G-TARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLPA 460


>gi|253580705|ref|ZP_04857969.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848076|gb|EES76042.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 927

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 142/264 (53%), Gaps = 12/264 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            + + + +AE+ N AKS FL +MSH++RTP+NA+LG+SE+I+ E    L +    +Y   
Sbjct: 531 QARKAKIQAEKANAAKSEFLFNMSHDIRTPMNALLGYSELIKRE----LTDPKLLDYQEK 586

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + +SG  LL++IN +LD++RIE+G+ EL E  + + DI +    + Q  A++K I +  +
Sbjct: 587 MEQSGNLLLSIINNVLDMARIESGKVELDEDYVKIRDIYQGIYKIFQAEAEKKCIHLKME 646

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYIS--IKDN 408
            D     V  DE   +++ LNL+SNAVK+TA GGRV + +            I   + D 
Sbjct: 647 YDVKHEHVICDETKNKEIFLNLISNAVKYTASGGRVTIRITELDCDRKDYVRIRTQVIDT 706

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++E  +P++  +F +          G GLG+PI +  +    G   + SK  EG + 
Sbjct: 707 GIGMSEEFLPSLFEAFARERNTTDGKIAGTGLGMPIIKKYIDMMYGTIEVESKQGEGSKF 766

Query: 469 IAILPNTRVLNFI--PEDNHESTQ 490
              L   R+ +     +D  +S+ 
Sbjct: 767 TVTL-EYRIADKSYYEQDTEKSSD 789


>gi|148976729|ref|ZP_01813401.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
 gi|145963842|gb|EDK29101.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
          Length = 1004

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 223 DLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L    E          + R  AE+ + AKS FLA+MSHE+RTP+N +LG + +++   +
Sbjct: 441 QLQQTNEKLNVEVTNHAKARSAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            PL       Y   I+RSG++LL ++N++LD S+IEAG  E+  ++  L  +V++   ++
Sbjct: 501 NPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRIASFDLHQMVQDTYQLM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
           + RA EK +     I+  +   W  D   + Q++ NL+ NA+KFT  G   + +++    
Sbjct: 557 EGRAAEKKLGFSYHIESDVQRYWRGDVTRISQILNNLVGNAIKFTDKGDVDIFISLDLED 616

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GI E E   +  +F Q +    +   G GLGL I++ IM    G   
Sbjct: 617 ENRVMFEVSDTGVGIHESEQKCLFDAFSQTNSGRNT-TGGTGLGLAISKRIMLAMDGDIG 675

Query: 458 IRSKLREGVEVIAILPNT 475
           + S+  EG +    LP  
Sbjct: 676 VHSEEGEGSQFWFSLPLQ 693


>gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 870

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +I  I+++   LL LIN+ILDLSRIE+G  +   +  +L  +++      +L   
Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                + +  + S   +  D   ++QV+ NL++NAVKFT   G +             + 
Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E  +  +   F +      S  QG GLGL I Q+I+    G   + S+   
Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGTITVTSEEGH 857

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 858 GTRFTVRLP 866


>gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 754

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 10/270 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           LF   V +     ++  +  +L       +  +++AEE N AKS FLA++SHE+RTP+N 
Sbjct: 338 LFFGVVAMYKDITDRKLIEKDLREKCEQLELLKQKAEEANKAKSIFLANISHEIRTPMNG 397

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I    ++++LE +    NE  K+YI  ++ S   +L LIN +LD+S+IE+G + ++    
Sbjct: 398 ITAAIQLLKLEDI----NEKQKKYIRILNDSANTVLRLINNLLDMSKIESGTFRINREPF 453

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           +L + +      L +    K +E+   +D ++   +  DE  +++++ NL+SNAVKFT  
Sbjct: 454 NLKETINNIYNSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNLISNAVKFT-D 512

Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G +   V   S          +IKD+G GI +     +  +F QG+I+      G GLG
Sbjct: 513 DGYISFRVSMISEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSMKKYMGTGLG 572

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I++       G+    S   +G   I  
Sbjct: 573 LSISKQFANLMNGEISFESSFGKGSTFIFT 602


>gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2]
          Length = 633

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 14/322 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L    +L+    +  +   ++    +    +   +       + I  +  + ++  +S 
Sbjct: 169 SLSKIAWLTIAITLFTVILVSLFIGKITQYFVVSPIGKIKDATSSIAGNHKRVSID-VSG 227

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + E  +L  ++E   +  +   +RA+  N AK+ FLA MSHE+RTPLN I G + ++   
Sbjct: 228 KDELSELAQDVEAMSADIENYVERAQAANKAKTDFLAVMSHEIRTPLNGIQGLATLLLDT 287

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +    ++  K+Y  D+  S   L N+IN++LDLS+IE+G  E+  +  +L  ++ + I 
Sbjct: 288 PL----DDKQKQYASDLRSSATILANVINDVLDLSKIESGMSEVDVTEFNLDSMLNDLIT 343

Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
           +L + A   +  +  K        V +D   +RQ+++NL SNA+KFT   G V VT    
Sbjct: 344 LLGINASANHTRLEYKSKNLDSVMVTSDVTKLRQIVINLASNAIKFTHK-GTVTVTASLK 402

Query: 396 ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        IS+KD G GI    +  +   F Q   +I     G GLGL IA+ + 
Sbjct: 403 KVAGPSVEENRLVISVKDTGIGIEPDRLEHIFDKFTQSDSSISRRYGGTGLGLSIAKELS 462

Query: 450 ANHGGQFLIRSKLREGVEVIAI 471
              GG   + S++ EG      
Sbjct: 463 QILGGDVKVMSRVGEGSCFTMS 484


>gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 510

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  ++    ++  A +  L KS+FL++MSHE+RTP+NA++GF+ ++   +      
Sbjct: 111 IDKAKELETQLILSKDIAVKAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQLS----PR 166

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+  +  S ++LL LIN+ILD S+IEAGR E  E+  S+ D+V    + L  +A 
Sbjct: 167 PEQMEYLKLLKFSAENLLVLINDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQKAN 226

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           EKNI++   +D  L  V   D   + Q++ NL+SNAVKFT   G+V +          Y 
Sbjct: 227 EKNIQLKLLMDHDLPDVVKGDPVRIGQILTNLISNAVKFTKE-GKVTIVASLHKKYDDYT 285

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIA  ++  +  SF Q +        G GLGL I + ++     +  ++
Sbjct: 286 IVDFEVIDTGIGIAANKLDDIFDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKVK 345

Query: 460 SKLREGVEVIAIL 472
           S+  +G      L
Sbjct: 346 SEPGKGSVFYFSL 358


>gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 571

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 166/443 (37%), Gaps = 29/443 (6%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
            ++                + VLL   +  W +++   P+  +  ++V  A     ++V 
Sbjct: 151 ADLDATVTTVRRITLSAAGVAVLLAMGLSFWLSRSLSEPLLEMSRVSVDMARGRFDRRVT 210

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT--IYKSATLLIALSIS 152
                               +  G     +  +       E +   + +    + +    
Sbjct: 211 VQRKDEIG-----RLAENLNLLAGSLDRSVGELAREKGKLESVVANMAEGVVAVDSSGEV 265

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L+N      +     P +  L  + + +     + +    A  L+  + + +       
Sbjct: 266 ILTNAPARNILKNGTVPELTTLFQEVLANGERGAVEIDLNGAHLLAQCSPLRHGDGAVFG 325

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +   Q                     ++ E     +  F+A++SHELRTPL +I G  E
Sbjct: 326 AVAVLQDIT----------------ALRQLE---QMRRDFVANVSHELRTPLTSIQGIIE 366

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +     G +       Y+   H     +  L+ ++LDL+ +EAGR +    A+ L +I+
Sbjct: 367 GLID---GVIPAAEAGRYLRVAHGESLRMNRLVQDLLDLAALEAGRADWELHAVELGEIL 423

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               I LQ    EK + I +++ P L  + A+E  + QV+ NL+ NAV+F+  GG + V 
Sbjct: 424 DRVEIRLQAPRSEKGLAIRREVPPDLPPLLANENRLEQVLTNLVENAVRFSPPGGEITVA 483

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                     ++++D GPGI   ++P V   F +   +      G GLGL I + I+   
Sbjct: 484 AEKRPHNRITVTVRDQGPGIPPEDLPHVWDRFYRVEKSRARETGGTGLGLAIVKQIVEAQ 543

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
           GG+  + S   EG      LP  
Sbjct: 544 GGEVAVESSPGEGASFFFTLPAA 566


>gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 11/242 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R +AE  + AK+ FLASMSHE+RTPL++++G++E++          +        I  +G
Sbjct: 492 RIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLD---DAELTQRQHLQASRIRSAG 548

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL ++++ILD S+IEAG+ +L     +L  ++   + +++  A+ K +EI  ++DP+L
Sbjct: 549 SALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPAL 608

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
              +  D+  +RQ++LN L+NA+KFT   GRV + V              S+ D G GIA
Sbjct: 609 PRALVGDQNRLRQILLNFLNNALKFTRR-GRVVLAVEKAGDGAGGWPIRFSVTDTGIGIA 667

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-- 471
             +   +   F Q   +I+    G GLGL I++ ++   GG   +RS   EG        
Sbjct: 668 PEQQARLFKRFSQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVRSAPGEGSTFWFEVL 727

Query: 472 LP 473
           LP
Sbjct: 728 LP 729


>gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2424

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            AEE   AKS FLA++SHELRTPLN ++G SE++    +    N    E    I  S   L
Sbjct: 1936 AEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDSGL----NREQMEMADSIRVSADLL 1991

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357
            L +IN+ILD SR+EA + +L   A +  ++VRE +  +    + +  +KN++I Q I+  
Sbjct: 1992 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINLP 2051

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIA 413
               ++ D   + QV+ NL+ N++KFT   G + +                 +KD G GI+
Sbjct: 2052 PMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARIDEETPDKATLTFWVKDTGIGIS 2110

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470
            +  +  +   F Q   +      G GLGL I +S++     G   + S+   G       
Sbjct: 2111 QQHLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMEGTIQLESEENVGTTAWFTV 2170

Query: 471  ILPNTR 476
                 +
Sbjct: 2171 TFEKAK 2176


>gi|51832261|gb|AAU10314.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 997

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 13/267 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++   + + + +++ L  +   +   R+ AE  N  KS FLA+MSHE+RTP+N I+G ++
Sbjct: 707 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 766

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +     +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +
Sbjct: 767 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 822

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +     RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+K T   G V V
Sbjct: 823 FNALKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKV 881

Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +     +           ++ D G GI   ++  +  +F Q   +      G GLGL I
Sbjct: 882 AISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 941

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++ ++   GG+  + S   +G      
Sbjct: 942 SKRLVTLMGGRMWVESDAGKGSVFYFT 968


>gi|197104023|ref|YP_002129400.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477443|gb|ACG76971.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 616

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 173/401 (43%), Gaps = 22/401 (5%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
            L ++ + +  +  +V  +R   L+  + +         +       E    +  A  LI
Sbjct: 72  RLLRRWLRTSGEADQVRGYRRLALLSAVRVSTYLVPSVAMVLAGGLGEMAYFWVQAGTLI 131

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           A+++SA    +     +    PV+VA     + +  +       +L         +    
Sbjct: 132 AIALSA--GALSRTIFWGFVTPVLVAAGVTCLTT--LPPAPAGAVLLGLAIMLALLAMIS 187

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----------EENLAKSRFLASMS 257
             +   I    A  +  +A +   +   D+                + N AKS FLA+MS
Sbjct: 188 NNTTQAISGWHAAFNANLALVRELEIARDQAVAERAAADRAREEARQANRAKSNFLATMS 247

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +LG +++++ +      +      +  +  SG++LL+++N+ILD+S+I+AG
Sbjct: 248 HEIRTPMNGVLGMAQLLKRD----EADPQQIARLDTLIDSGEYLLSILNDILDVSKIDAG 303

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R E+      L  ++   +     RA EK + +   +       V  D   +RQ++ NL+
Sbjct: 304 RLEILSRPEDLRLLLDRLVGFWVGRAIEKGLALNLTMGSGAPDFVLTDALRLRQILFNLV 363

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NA+KFT  GG   +  G  +  G      S++D GPGIA G++P +   F QG  A   
Sbjct: 364 GNALKFTETGGVEVIVTGQPARDGVVLTRFSVRDTGPGIAPGDLPRLFDRFSQGDEAEIR 423

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              G GLGL I + +    GG+  + S+L  G      +P 
Sbjct: 424 KFGGTGLGLAIVRQLAELMGGEVAVESRLGAGSTFHVEIPL 464


>gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 535

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 10/246 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E R++A E + AKSRFLA+MSHE+RTP+N +LG S ++    +      + +E +  I
Sbjct: 283 LVEARQQATEASRAKSRFLATMSHEVRTPMNGVLGMSALLATTDL----EPSQREMVNLI 338

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SGQ LL ++N+ILDL+ IE+GR+E+ +   +  ++VR      +++A EK + +  +I
Sbjct: 339 EGSGQALLTILNDILDLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEI 398

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409
           DP     V  D   +RQ++ NLLSNAVKF+   G V V                 + D G
Sbjct: 399 DPVAEREVVGDPARVRQILSNLLSNAVKFSDR-GEVRVRCLMTQTADRAHDVTFEVGDTG 457

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+    +  +   F QG   ++    G GLGL IA+ +    GG   + S    G +  
Sbjct: 458 IGMDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFT 517

Query: 470 AILPNT 475
             LP  
Sbjct: 518 VKLPAA 523


>gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
 gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
          Length = 586

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578


>gi|16127853|ref|NP_422417.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236674|ref|YP_002519111.1| hybrid histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13425375|gb|AAK25585.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965847|gb|ACL97203.1| hybrid histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 595

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 169/451 (37%), Gaps = 18/451 (3%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83
           G   P   +     +   V S    + +       +              +W  +  A+ 
Sbjct: 3   GGGAPMSAETKDIDLERAVASRRVNTYLRLSSTFAICATLHLVVGLRWVWIWGALYTAIQ 62

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
                L  +++       +   WR + ++    +         +        +       
Sbjct: 63  FLETWLALQLIKRPQSSPD--RWRRFSVIALPFLTSAVFGFLAIPLFASDARFAPTLGGM 120

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L  AL    + +  L  A   +  P V  L    I++      +         +     
Sbjct: 121 LLAGALMNVVIVHGGLRSATIAAATPYVGYLLVIPIVARQANPDAPLANALWFGALLLIA 180

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +    +   + +AE D        AK+ ++  R  AEE   AKS F+A +SHELRTP
Sbjct: 181 AVAVASRTLHA-ALKAEAD--------AKTEAERRRHEAEEAVAAKSAFVAMISHELRTP 231

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           ++AIL  +  +  E        + K +   I  +G  +  L+N++LD SR+EAGR  + +
Sbjct: 232 ISAILAGAGRLHSEA----PEASSKVHAQLIADAGGLMRTLLNDLLDFSRLEAGRMSVEK 287

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382
           S  +L   + + +   +     K +++      ++      D   ++QV+ NLLSNA KF
Sbjct: 288 SPFNLRQSLSDTLRFWRPELARKGLKLRVVGASTIPQWTLGDAMRLKQVLNNLLSNAAKF 347

Query: 383 TAIGG-RVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           T  GG  V +       +    + + D GPGI E  +P + T F Q + ++     G GL
Sbjct: 348 TRSGGVSVTLRAEIVGDQVRLVVDVVDTGPGIPEAALPRLFTPFDQLNESVARLHGGSGL 407

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL I++ +    GG     + L +G      
Sbjct: 408 GLAISRELARLMGGDLTASNALGQGAHFRFS 438


>gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
 gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
          Length = 1392

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 141/328 (42%), Gaps = 19/328 (5%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             P+   +      +     +   G+L   L  + + TY L +   + L    E      E
Sbjct: 774  APLRFTVLPHFYETWWFKLLVGVGLLGLMLGAYRWRTYRL-RKRQETLEAAVETR--TEE 830

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS-EVIELETMGPLNNET 286
            L   K  ++   +R +E + AK+RF A +SHE RTPL+ IL    + ++  T G  +   
Sbjct: 831  LARQKEKTERQAERLQELDEAKNRFFAHVSHEFRTPLSLILSPLRDALQRATDGAASLSE 890

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  +  + + L  LI ++LDL+ +EAG  EL      L  +V       + +A++K
Sbjct: 891  NQ--LRRMTTNAERLQRLIGQLLDLATLEAGGMELDRRPGDLAALVERTAEAFRSKAEQK 948

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------- 398
             I +  ++ P    +  D + +  ++ NL+ NAVKFT  GGRV + +  T          
Sbjct: 949  GIALKTEMPPERVEMRFDPEKVETIVSNLVGNAVKFTPEGGRVVLRLRLTEDTPSGPAAD 1008

Query: 399  -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                  G  I++ D GPGI   E   +   F +       A +G GLGL +   ++  HG
Sbjct: 1009 EAPAEGGVRIAVADTGPGIDPAEQARIFDQFERSGTNSTEAHEGTGLGLALTSELVELHG 1068

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFI 481
            G   + S    G E I  LP   V    
Sbjct: 1069 GTIEVESTPGAGAEFIVHLPRMPVDTSP 1096


>gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 975

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                    ++  L   +E      E   A++    + +RAEE + AKS FLA+MSHE+R
Sbjct: 404 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 463

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+G +E+   E +     E  +  +     S + LL ++N++LDLSR+E+GR  L
Sbjct: 464 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 519

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380
                S   + R  + ++   A  K ++    I      +V  D   +RQV+LNL+ NA+
Sbjct: 520 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 579

Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           KFT  GG V +TV                     RG   ++ D G GI       +  SF
Sbjct: 580 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 638

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +      G GLGL I++ ++   GG+  +RS+  +G E    +P  
Sbjct: 639 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 689


>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
 gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
          Length = 1682

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                +     +      M      F+  +T      + +        DD+  E E A   
Sbjct: 863  VYNRLWQGEAVCREQELMRRDGSLFWARLTGKAVDIHDRSKGTVWVIDDITTERE-AFQT 921

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +K AE+   AK+ FLA+MSHE+RTP+NA++G + ++    +        ++Y+  I
Sbjct: 922  VRNAQKLAEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTDLTR----QQRDYLKKI 977

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              S QHLL +IN+ILDLS+IEAG+  +      L  ++     ++  +A  K +E+   +
Sbjct: 978  QGSSQHLLGIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDV 1037

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGP 410
              ++   +  D   + QV++N  +NAVKFT  G   +   +  T+ R      S+ D G 
Sbjct: 1038 GKTVPRSLVGDPLRLGQVLINYANNAVKFTERGSIVIRCDLAETAERDVVLRFSVTDTGI 1097

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI   +IP +  +F Q   +      G GLGL I++ +    GG+  + S+  +G     
Sbjct: 1098 GIEAEQIPRLFQTFEQADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDSEYGKGSTFWF 1157

Query: 471  I 471
             
Sbjct: 1158 T 1158


>gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
 gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
          Length = 2041

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 179/451 (39%), Gaps = 15/451 (3%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
              R++  L             L V   A +        + P   +  +      + +  
Sbjct: 54  APKRQLALLSCAIKGAACHTDMLLVTGRARVVFDAFGAIVIPQRYVQWMVTTPTMVYILS 113

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           K+ +   +        I + V  +  GL            W    +++     +L  +  
Sbjct: 114 KISDFTPQQTATA---ICMDVVMVLSGL-MANFAPGPYLNWLMFSVSMLSFVGVLYMMGR 169

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITY 205
              S      +       + + + T  I SM  +   L  + +++        F  ++  
Sbjct: 170 MVFSAVKEHSSPSSRRSLLFIYMCTLLIWSMFPVAWVLHLLNSSSPYGEYLNIFANFMAK 229

Query: 206 HLFKSNVKILSCQA-EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
            LF S++   +     +  L+A+     +      +   +    K +F++ MSHELRTPL
Sbjct: 230 VLFSSSIMYGNYMTIAQRRLLAQQAAENAHRVRMIQELRDAVTRKDQFMSLMSHELRTPL 289

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+  S+ +     G + N   + ++  I  S  HLLN+IN+ILD++ ++ G+  +   
Sbjct: 290 NGIIQLSDALVRGAGGEM-NPKGQHFVKTIKNSSNHLLNIINDILDVAALKEGKLTIKHE 348

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             SL   V   + ++   A++ ++ I + +DP    + AD   + Q++ NL  NA+KFT 
Sbjct: 349 LCSLAKAVEHVVDIVAPLARK-DVAIERSVDPHTPLIIADFSRVIQILYNLAGNALKFTH 407

Query: 385 IGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GRV V V  ++      + + D G GI    I  +  +F Q  +++     G GLGL 
Sbjct: 408 R-GRVCVRVSPSADGSSVTLQVADTGIGIPPERISGIWGAFEQVDMSVTRKYGGTGLGLN 466

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I + ++  H G+  ++S    G      LP 
Sbjct: 467 IVKQLVEAHEGKIEVQSAEGRGTTFTVTLPV 497


>gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 469

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 3/293 (1%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           A   +  T             L           + E              E N  K++F+
Sbjct: 160 AAFEAALTVAAVRNHYGQSIALRWLMRDITARKQAESHLHQVQLQNLELIESNRLKNQFM 219

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
             +SHELRTP+NAILGFS+++               ++  I  + +HLL +I EIL  SR
Sbjct: 220 GIISHELRTPMNAILGFSDLLLRRFHDRY-EPQQIAFLERILNNAKHLLLMIEEILAYSR 278

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           ++A R EL   A  L+++ R     +Q  A +K + +   + PS   V  D   +RQ+++
Sbjct: 279 LKAHRLELQLEAFDLLELARITAEEMQCMADQKALALELDLPPSPLVVCNDRTRVRQILV 338

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA+KFT   GRV + +         I+++D G GI       +   F Q + +   
Sbjct: 339 NLLSNAIKFTDT-GRVTLAIAPGKAEKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTR 397

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDN 485
           ++ G GLGL I  S++    G+  + S+L EG      LP       I PE +
Sbjct: 398 SQGGTGLGLSITSSLVTLMQGKIWVESELGEGAVFRIELPRNVPSPPIHPEQD 450


>gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 870

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +I  I+++   LL LIN+ILDLSRIE+G  +   +  +L  +++      +L   
Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                + +  + S   +  D   ++QV+ NL++NAVKFT   G +             + 
Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E  +  +   F +      S  QG GLGL I Q+I+    G   + S+   
Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGTITVTSEEGH 857

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 858 GTRFTVRLP 866


>gi|315125702|ref|YP_004067705.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
 gi|315014216|gb|ADT67554.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
          Length = 927

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 13/296 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +          ++             +  +  L  E++      ++  ++A + +  
Sbjct: 220 LETVAQQVNLLLKKVSKVQADDQAAKKELKKLQTSLETEVQSRTFELEKQTQKALKASET 279

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+N ++G  +++    +    +   +     I  S   LL+++++I
Sbjct: 280 KTTFLATMSHEIRTPMNGVIGTIDLLRQTEL----DGAQQRLSTIIRESAFSLLSILDDI 335

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+  +  +  S+ D + E   +L   A+ +++E+   I P + + +  D   
Sbjct: 336 LDFSKIEAGKLNIDPTPFSVADTLEEVAKVLSSVAKNRHLELDLSIAPDIPNNLMGDSVR 395

Query: 368 MRQVILNLLSNAVKFTAIGG------RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPT 419
           +RQV+ NL SNA+KFT+  G      ++ V V   +         + DNG G+++ ++  
Sbjct: 396 VRQVLYNLCSNAIKFTSTNGSTQGRVKISVEVAHNTADHFTLRFCVVDNGKGMSQSQLRK 455

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + + F Q   +I     G GLGL I +S+     G   + S    G E    LP +
Sbjct: 456 IFSPFTQAESSITREFGGTGLGLSICKSLTELMLGTIHVTSHEGIGSEFTVELPFS 511


>gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 637

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK  E     K   ++++SHE+RTPL A+LG++E +       +  +  +EY+      
Sbjct: 409 ERKEME---QMKDEMISAVSHEMRTPLTAMLGYTEFMLDN---EVPADQQREYLRITLHE 462

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  LI   LDL R+ + +  ++   + L  ++ E + +    ++  +I +       
Sbjct: 463 SEKLNELIGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITL--DCPSD 520

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  +  D K +RQV  NL+SNAVK++  GG V V           I+++D G GI+   +
Sbjct: 521 LPRICGDNKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKD-CVVITVRDEGIGISPQAV 579

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F + +        G GLGL + + I+  HGG+  + S L +G      LP  
Sbjct: 580 ERIFERFYRVNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLPVA 637


>gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 466

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            EE   ++  FL ++SHELRTPL+ + G++E +        + E  ++Y+  IH     L
Sbjct: 232 LEEVENSRREFLQNVSHELRTPLSYMRGYTEAMLEGM--TTSGEEREKYLRIIHNETARL 289

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+N++LDL+++E   Y + +  I    +V +     +  A++K+I +  ++D  +  +
Sbjct: 290 TRLVNDLLDLAQLEGESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEVI-I 348

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QVI NLL NA+++T   G V + +   +     +++KD G GI E ++  ++
Sbjct: 349 EGDADRLEQVISNLLDNAIRYTPEAGEVMMELKQ-NDHLAVLTVKDTGCGIPEEDLENIM 407

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +        E G GLGL I + I+  HGG   ++S+  +G  +    
Sbjct: 408 DRFYRVHKPRTRNEGGFGLGLAIVKQIVWKHGGTIDVQSQPGKGTSISLTF 458


>gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
 gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
          Length = 952

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I        + +     E  +     +       E R +A      KS+FLA++SHE+
Sbjct: 244 IMIILRDISDQITLKEMNTELQNKSELEQKRNLELMEARDQAVAATKIKSQFLATISHEI 303

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN ++G +E++   +     N    +    I  SG+ LL++ ++ILD S+IEA R E
Sbjct: 304 RTPLNGVIGMAEMLLKTS---PLNTEQHDIAETIFGSGELLLSITSDILDFSKIEASRLE 360

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L       I  +      + +    K IEI    DP +   +  D   + Q++LN+ +NA
Sbjct: 361 LEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFDPDIPHRLVGDPNRLVQIMLNMGTNA 420

Query: 380 VKFTAIGGRV-HVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           VK+T  G  +  V+V           I I+D+G GI E +   +   F Q   +      
Sbjct: 421 VKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIGIKEEQRKHLFEPFHQIDASTTRKYG 480

Query: 437 GVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472
           G GLGL I+  +    GG  L+  S    G      L
Sbjct: 481 GSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSVTL 517


>gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 423

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    E  +        + +E +  K+ F+A+MSHE+RTPLNAI+GF+ ++   T    N
Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+++   LL LIN+ILDLS+IE+GR   + S + L DI +E  ++  L+ 
Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 ++  +      +W D   + QV+LNLLSNA+KFT+  G + +           +
Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E ++ +V   F +         QG GLGLPI + I+   GG+  +RS+L 
Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +G      LP       + E +  S   +C
Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420


>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 1928

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  L V ++ +        L +        L +     +L  + ++
Sbjct: 1145 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 1204

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206
              S F      FL+    ++A S   I       + L                       
Sbjct: 1205 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1264

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
            L +SN ++    A      +++EV     +  R+  EE           KS FLA+MSHE
Sbjct: 1265 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1324

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L+++   E+   I+ +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1325 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1383

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            E+S + I+L+ +V       +    EKN++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1384 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1443

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    +                    ++    G+    S+ D G GIAEG++ 
Sbjct: 1444 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1503

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1504 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 1559


>gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 737

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 7/296 (2%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           I +   + +++  + A A      I +            +A   +L    +         
Sbjct: 295 ISTQGTMLVNIGILAAGAFLLVAVIIWAYLNKRRDAERLEARTRELNITQDR----LVIA 350

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + +AEE NLAKS FL+ MSHELRTPL AI+G+++V+  +      +    + +  +  + 
Sbjct: 351 KAKAEEANLAKSEFLSLMSHELRTPLQAIIGYTDVVIEDLYVEGMDHLSTD-LTRVVNNS 409

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q LL LIN +LDL++IE+G  +L+   + L  +V E I  ++ +  EKN+ +   ++   
Sbjct: 410 QRLLRLINGVLDLAKIESGHMDLTLEHLELHSLVNEAIDNVKPQFDEKNLPLETDLESIP 469

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +   D + +  +ILNLLSNA KFT   GRV + V   +     I+ +D G GI    +P
Sbjct: 470 EAALVDREKLLHIILNLLSNACKFTDR-GRVTLAVKHNA-NAITITCRDTGMGIDAAALP 527

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            V   F Q   +      G GLGL I +      GG   + S+   G      +P 
Sbjct: 528 FVFDRFQQVDSSATRQHSGSGLGLAITKQFCELMGGHITVNSEPGRGTHFKVEIPL 583


>gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
 gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
          Length = 755

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 176/445 (39%), Gaps = 21/445 (4%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM---NSDIKI 100
           +++ V+P+  L  L         +        +++  AV  A     +       + +  
Sbjct: 163 AVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFDITRANLLAQ 222

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
            +                     L LV         L   +  TL    + + ++ + L 
Sbjct: 223 AQQQEALEAANASLKVQRAEARRLALVAENANDITRLLDREGRTLWANDAFTRVTGYTLA 282

Query: 161 YAVFLSF---------FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            A                 V+A  ++A  +   L + +        +F+           
Sbjct: 283 EAKGKLLGDLIRDPDTSLEVLARISEARQAGRPLRVEILNRSKDGRTFWLETNQVPMLDA 342

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              +      +  I   ++ +   ++ R  AEE   AK+ FLA+MSHE+RTP+N ++G +
Sbjct: 343 CGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEIRTPMNGVIGMA 402

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++    +    NE  + Y G I  S   LL LIN++LD+S+++A    LS +       
Sbjct: 403 QLLRDSGL----NEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVSLSCTDFDPRAC 458

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
             + + +L+ +A+ K +++   I   +   +  D++ +RQ++LNL  NA+KFT   G+V 
Sbjct: 459 FEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNLAGNAIKFTER-GQVQ 517

Query: 391 VTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           VT+         G   S+ D G GI    +  V   F Q   AI     G GLGL I++ 
Sbjct: 518 VTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRFGGTGLGLAISRR 577

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +    GG   + S L  G      L
Sbjct: 578 LAEAMGGSISVASDLGIGSCFTVRL 602



 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 21/231 (9%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
           ++  +     RV P    F   V+ +               +     A +    +KV   
Sbjct: 24  LLLRYARGRVRVFPHRQAFAFAVSLLMGLILSPLAGAAGFGLHFLGDAIDTLYLRKVPGW 83

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLC---------WTLLTLVEPGTWTPEYLTIYKSATLLI 147
             +       R    V                 W    + +P         +       +
Sbjct: 84  LQRGASCRQIRRISTVTAGLHAAAVAAAASVPEWLGHVVPQPSLPDHGDPLLTLGLLTAL 143

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIM--------SMHVLDISLAGMLATALSF 199
           AL+   +  F  P A        V  L+  A +        S   L ++   ML  A+ +
Sbjct: 144 ALNAGLVLPFHRPSAFVRLAVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGW 203

Query: 200 FTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRK---RAEEEN 246
             Y     F      L  QA++ + L A     K    E R+    AE  N
Sbjct: 204 ALYFASRNFDITRANLLAQAQQQEALEAANASLKVQRAEARRLALVAENAN 254


>gi|332829689|gb|EGK02335.1| hypothetical protein HMPREF9455_01605 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1351

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 232  KSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            K+  +  R +A   EE NL K +F  ++SHE RTPL  I+        E      N+   
Sbjct: 817  KNELNIERLKAKKQEELNLTKMQFFTNISHEFRTPLTLIISPL----KEIEQTEPNQKRA 872

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
              +  + R+   LL LIN+ILDL +IE  + ++    I+L+  V++ + +       K I
Sbjct: 873  HLMKMMLRNADRLLRLINQILDLRKIEYDKIQVHARPINLVLFVQDFVGLFTDIIDRKQI 932

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
             +    +     +W D   + + + NLL NA+K+T  G  + +++   +      SI+D 
Sbjct: 933  SVSFNYEAREIPIWYDPDLLEKCLYNLLFNALKYTPDGNSIFLSIKQKNDGSVLFSIRDT 992

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GIA  ++P +   F QGS +  S   G G+GL + ++I+  H G+  + S++  G   
Sbjct: 993  GCGIAPEDLPHIFDRFYQGSFSQNS---GTGIGLHLVKTIVELHHGKVWVESEVGAGSNF 1049

Query: 469  IAIL 472
               +
Sbjct: 1050 TLYI 1053


>gi|288940186|ref|YP_003442426.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895558|gb|ADC61394.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 892

 Score =  265 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 108/474 (22%), Positives = 186/474 (39%), Gaps = 21/474 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
           V   I    D +  +  +++    +      E   +      +  +              
Sbjct: 291 VSDEIRRVMDWMAQDLETQIQVAEDRRRRLYEQHLKTCRERVMAAMRQGVRLQNLLTGAH 350

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131
                    A   A ++  +          E        L   I      +L        
Sbjct: 351 QADLLGAVGAEGMALIAGSQVYTAGTTPEAERISQLAVDLRRHIDDDHS-SLFATDCLSD 409

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
             PE + +  +A  L+ L +++  +  L +        V    +     ++++      G
Sbjct: 410 HLPETVDLGPTAAGLMFLRLASARDLGLLWFRAEQVRHVT--WAGNPDKAVNIGPDGRIG 467

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
              +  ++   +    ++   + L+   E   LI           E R +AE  + AKS 
Sbjct: 468 PRQSFAAWQQTVRLRSWRWAQEELASATELGALIDI---------ELRHQAEAASQAKSI 518

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+R PLNA+LG + ++  + + P    T  E +  I  +G+HLL+LIN+ILDL
Sbjct: 519 FLANMSHEIRNPLNAVLGMARLMRQQALIP----TQAERLDKIEVAGRHLLDLINDILDL 574

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IE G+  L ES + +  I+R  + ML  +A EK +++  K+    S +  D   ++Q 
Sbjct: 575 SKIEDGKLTLEESEVRIEAIMRNLVAMLSDQAAEKGLKLCVKLQAWPSHLLGDSARLQQA 634

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQG 427
           +LN  SNA+KFT   G V +     +  G        ++D G GIA   +  +   F Q 
Sbjct: 635 LLNYASNAIKFT-QYGSVTLRAFPEADLGDSVLGRFEVEDTGIGIAAEHLSRLFNEFEQL 693

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             +I     G GLGL + Q +    GG+  + S L  G      +   R    I
Sbjct: 694 DTSITRQYGGTGLGLALTQQLARLMGGEAGVESTLGVGSTFWFTVRLRRGTPSI 747


>gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O46]
          Length = 546

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O11]
          Length = 546

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 546

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754]
 gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 546

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
 gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 546

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
 gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 689

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 15/243 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG-------------PLNNETYKEY 290
           E +  K+ F++++SHELRTPL ++LGF+++I+ +                       K+ 
Sbjct: 197 EVDQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFPQVQTDNKKIQRTVRQVKDN 256

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I   G+ L  LIN++LD++++EAG+ + +   + + +I+   I       + K+I+ 
Sbjct: 257 VTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETKHIQF 316

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +K++  L  +  D+  + QV++NL+SNAVKFT   G +             IS+ D G 
Sbjct: 317 IKKVETELPEISGDKDRLIQVLINLISNAVKFTQK-GTITCRATQRHS-EIIISVIDTGM 374

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  + P V   F Q    +    +G GLGLPI + I+ +HGG+  + S+ ++G     
Sbjct: 375 GIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGSTFSF 434

Query: 471 ILP 473
            LP
Sbjct: 435 TLP 437


>gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 1156

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 3/269 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 445 LEQTNEQLAERTEALDRKNNELNQAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L+++  K +   I+ +G  LLNLIN+ILD++++EAG+ E+   + 
Sbjct: 505 SLILAKLLSENAEGNLSDDQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPEST 563

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           SL  +      M Q  AQ+K ++   +++ P   +V  D + + QV+ NLLSNA+KFT  
Sbjct: 564 SLERLAEGLQGMFQPLAQDKGLDFEVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFT-E 622

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V + +   +G G   +++D G GIA  +   +  +F Q          G GLGL I+
Sbjct: 623 HGKVSLGISHQAGLGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRKYGGTGLGLSIS 682

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + +    GGQ  + S   +G     ILP 
Sbjct: 683 RDLAHLLGGQISVDSSPGQGSVFSLILPV 711


>gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain
           protein [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 553

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 330 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 387

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 388 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 445

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 446 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 504

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 505 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 548


>gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132]
 gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
 gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819]
 gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796]
 gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus
           04-02981]
 gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819]
 gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796]
 gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS03]
          Length = 554

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
 gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
          Length = 1128

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 155/376 (41%), Gaps = 6/376 (1%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  V           + K   + + ++I  +       + F++   + +  + +
Sbjct: 332 GIDWALVVEVPESVAFARVNHLEKLFVVAMLIAIVLVVMASHYLSNFITSPLLKLTWAAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  +    +       +         + +S  + +    +++    ELE    L  +
Sbjct: 392 KVSAGDMDADMINTERKDEIGRLAVSFERMQRSIREKIQLIKQQN---EELESNLQLIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+  + +K  +  I  S
Sbjct: 449 QNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITAD-HKYQLDIIISS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L  L++++LD  ++  G  ++  SA+ L    R  + +       K + I  ++   
Sbjct: 508 GQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLIGNKPLRIINQVPDE 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI   ++
Sbjct: 568 PVWVCADPQRLEQVLYNLIGNAIKYTSE-GKIVISATVVDDN-IRVQVVDTGQGIPADQL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++    G   + S+   G      LP    
Sbjct: 626 DHIFEPLIQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLPIATA 685

Query: 478 LNFIPEDNHESTQYKC 493
                   +ES+ ++ 
Sbjct: 686 EQIDAASQYESSHFQA 701


>gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1065

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 162/398 (40%), Gaps = 38/398 (9%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            +     +G+     + +        +   ++ L     +T  +          I + ++
Sbjct: 342 YVRISSSLGQARPANLIVFPILFEDRVL-GVIELASFTPFTEVHRDFLNQLMETIGVIVN 400

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +       A+ +                       LAG L    S        L +SN 
Sbjct: 401 TIIANSRTDALLV-------------------ESQRLAGELQARSSELQVRQEELQRSNA 441

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLN 265
            +    A  +    ++E+     ++ R+  EE        +  KS FLA+MSHELRTPLN
Sbjct: 442 DLEEKAALLERQNRDIEIKNIEIEQARQEIEERAQQLALASKYKSEFLANMSHELRTPLN 501

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           ++L  + ++       L      E+   IH +G  LL LIN+ILDLS++EAG+ ++    
Sbjct: 502 SLLVLARLLAQNPTRNLT-PKQVEFANVIHSAGSDLLQLINDILDLSKVEAGKMDVHREW 560

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
             L  +V +     Q    EK ++   ++ P +   ++ DE+ + QV+ NLLSNAVKFT 
Sbjct: 561 ADLGKLVDDLQATFQPLTAEKGLDFAVEVAPDVPTRLFTDEQRLEQVLRNLLSNAVKFT- 619

Query: 385 IGGRVHVTVGWT--------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
             G+V + +  +        +      ++ D G GI++  +  +  +F QG         
Sbjct: 620 EDGQVALRIHTSHPLEPDSGATSKIAFAVVDTGVGISDENLKRIFGAFQQGDGTTSRKYG 679

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL I++ + A   G   + S+   G      LP 
Sbjct: 680 GTGLGLSISREVAALLDGDLRVESEFGRGSTFTLYLPL 717


>gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2]
 gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein C-term [Methanococcus maripaludis S2]
          Length = 614

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 21/330 (6%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A+  S    +  ++  +++    + + L   +  ++           + N    +     
Sbjct: 287 ALLNSVIQKIFFIAFSSLIIAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTG 346

Query: 222 DDLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHELRTPL 264
           D+L    E    ++DE                 +    +E +  KS  L+ +SHELRTPL
Sbjct: 347 DELEELAESFNKMADEIGKSDKKLKSDAHTLKTSFDELKEVDNLKSEILSIVSHELRTPL 406

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            AILG+ E+++ ET G L+ E  KE+I  I  +   L  + + + DL  ++    ++   
Sbjct: 407 TAILGYVELLKDETAGKLS-EKQKEFISVISENSDRLKRITDNMSDLVTVDNKILDIKRD 465

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            I+L   V + +      A+ KNI + + +D     +  D+  + QV+ NL+ NA+KF+ 
Sbjct: 466 RINLKKEVNDILRSFDYFAESKNIVLLEDVDN--LDIKGDKSKIHQVLSNLIENAIKFSK 523

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
              +V V +G+      ++ I D GPGI +  +  +   F Q   + K    G GLGL +
Sbjct: 524 KQTKVTV-MGFEDKGNIHLEITDQGPGIPKEHLGKIFDKFYQIDSSSKREVGGSGLGLAV 582

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + I+ +HGG   + SK+ +G  V  + P 
Sbjct: 583 CKKIVESHGGSIWVESKIGKGTTVHVMFPL 612


>gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 389

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +      ++RAEE N  KS  +A+M+HE+RTPLNAI+GF+ ++        + 
Sbjct: 143 ISKRKALEEELTAAKERAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IVDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  +++ S + L  ++ E   + + +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            +N+ +    +   + ++ D   + Q++ +LL NA+KFT   G V +          +  
Sbjct: 259 SRNLVLAWDGEQLGAHIYTDRGRLIQILEHLLCNAIKFTLK-GTVRLGYRKKEEGRIWFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +   +   F +         QG+GLGLP+ + I+    G   + SK+ E
Sbjct: 318 VTDTGCGIPEEKKELIFERFVKLDD----FVQGLGLGLPLCKIIVDRLHGTIGVDSKVGE 373

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 374 GSTFWFTLP 382


>gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1031

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
             L T  +        L   +  +   +   D    EL +A++         +  +  KS
Sbjct: 295 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 354

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD
Sbjct: 355 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 413

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
           +S++EAG+ E+     S+  +V     + Q  A EK +     I     ++ + D + + 
Sbjct: 414 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQTGAPTMLFTDRQRLE 473

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q   
Sbjct: 474 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 532

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  G GLGL I++ + A  GG   + S   +G     +LP   V  
Sbjct: 533 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 582


>gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6]
 gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6]
          Length = 925

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/451 (21%), Positives = 173/451 (38%), Gaps = 47/451 (10%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV-----YVWR 107
            + V LVA +       P       + L       +     M    +  +        W 
Sbjct: 203 LILVFLVAEMLFLKLSLPGNEALKFLALGAGVWIATDTIYFMQILNETYQPGGLLDSGWV 262

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA-VFLS 166
              L+  +A G+           +   +    Y  A               LPY     +
Sbjct: 263 AGYLLMGLA-GIAQGEAAKRGAFSANRDIEVRYDRAGW----------PLYLPYLCAAGA 311

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF +V +      +S   L +S+  ++         I         +     AE+     
Sbjct: 312 FFMLVWSRDHNFAISFGSLSLSVGVIIGLVFIRQMIILNENALLYREAQLEIAERRKAEE 371

Query: 227 ELEVAKSLSDETRKRAEEENLA---K----------------SRFLASMSHELRTPLNAI 267
           E++      +E R R     L    K                S FL +MSHE+RTP+NAI
Sbjct: 372 EVKRLNEDLEE-RVRLRTAELEATNKDLLVAKAKAEAAARAKSNFLDNMSHEIRTPMNAI 430

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G + +++    G       ++++  I +SG  LL +I++ILD S+I+  + EL      
Sbjct: 431 IGMARLLQ----GTDIKPEQRDFLDTIQKSGSALLAIIDDILDYSKIDGDKMELVNVPFD 486

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L   + + + ++ ++A EK +E+   ++  +   +  D   +RQV++NLL NAVKFT  G
Sbjct: 487 LQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRLRQVLVNLLGNAVKFTDRG 546

Query: 387 GRV-HVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V  V+     G       + +++D G GI+      +  SF Q   +   +  G GLG
Sbjct: 547 DVVLKVSSRRLEGSDDKVELHFAVRDTGIGISPENQSELFQSFTQVDSSKTRSYGGTGLG 606

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I++ I+   GG+    S++  G       
Sbjct: 607 LAISRGIVERMGGRIWAESEIGTGSSFYFDF 637


>gi|298492023|ref|YP_003722200.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298233941|gb|ADI65077.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 593

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 20/257 (7%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +  R++AEE +  KS FLA++SHE+RTPLN ++G  ++I     G  +     E++ 
Sbjct: 324 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGLLKLILE---GMADGPEEHEFVQ 380

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           D H    HLL ++N+ILD ++IEAG+ ++    + L ++  +    ++ +A+ KN+ +  
Sbjct: 381 DAHDLSIHLLGILNDILDFAKIEAGKMDIRCGPVRLHELFNDVESFVRPQAEMKNLSLQM 440

Query: 353 KID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------SGR 399
           ++        +  + + + QV+LNL+ NA+KFT  GG V ++                  
Sbjct: 441 QMPTTSDEIIILGNYQRLLQVMLNLVGNAIKFTHKGG-VTISADLVLKKAKGQSQPQHPG 499

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G G++  +   +   F Q   +      G GLGL I+Q ++   GG+    
Sbjct: 500 IVKVRVADTGIGVSLDQQDKLFQLFSQVDGSRTRPHGGTGLGLTISQKLIEAMGGEVHFY 559

Query: 460 SKLRE--GVEVIAILPN 474
           S L E  G  V   +P 
Sbjct: 560 S-LGEELGSTVTFTVPL 575


>gi|163795590|ref|ZP_02189556.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179189|gb|EDP63722.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 577

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 115/351 (32%), Positives = 179/351 (50%), Gaps = 12/351 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL--------STQAIMSMHVLDISLAG 191
           +  + L +  + +   +  +P A         +A         + + +     + + + G
Sbjct: 227 FLLSGLQVMSADAPTVDTDIPIATVSGVVLGRLAWKPERPGLSTLRPLAIPGAIALLIFG 286

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRAEEENLAKS 250
            L + +    +   H  +++   L  QA+      +   A+ + + + R +A+  + +KS
Sbjct: 287 GLLSVVVRKAHRAMHDLEASHHALHVQADSLAAARDRAEAQQVLEAQLRAQADSASRSKS 346

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA +SHELRTPLNAILGFSE+I  +T GP   +  + Y  DI+ SG HLL+LIN+ILD
Sbjct: 347 EFLALVSHELRTPLNAILGFSEIIAQQTFGPSTADRAQSYARDINESGNHLLSLINDILD 406

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LS+IEAGRYEL E    L D++  C  +L+ R  EKNI +      +   + AD + + Q
Sbjct: 407 LSKIEAGRYELMEETFVLRDVLDRCATLLRERVAEKNIGLTCH--GTSICLNADRRAVMQ 464

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V++NLLSNAVKFT+  GRV +     +     I++ D G G++  ++   L  FGQ    
Sbjct: 465 VVINLLSNAVKFTSPRGRVEL-FATVAHDAIEIAVSDTGVGMSHEDLQRSLQPFGQADSL 523

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              +  G GLGL IA+ +   HGG   +RS L EG      LP  R+    
Sbjct: 524 HTRSSGGTGLGLNIAEMLTKLHGGSLGLRSTLGEGTVATIRLPLNRLRASA 574


>gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 905

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 12/297 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVK--ILSCQAEKDDLIAELEVAKSLSDETRKR 241
           V  I  +G +   L   +       +S ++      +  +  L   +E         +++
Sbjct: 365 VSTIFFSGSVTILLLMRSIRKQRRIESELRGNQAKLKLAQQTLEKRVEQRTEELSAAKEK 424

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AK+ FLA+MSHELRTPLNAILGFS++++ E       E +  ++G I+RSG+HL
Sbjct: 425 AEIANHAKTEFLANMSHELRTPLNAILGFSQLLQSEG---NLTEAHHSHVGIINRSGEHL 481

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L LIN++L+LS+IEAG+  ++ S++ LI+++     M+QL+A  K+I +    +P +   
Sbjct: 482 LTLINDVLELSKIEAGQTVVNVSSLDLIELLETLQSMMQLKANAKSIHLSTTYNPDIPHF 541

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
           +  D   +RQ+++NLL NA+KFT  G   ++V    T           ++ D GPGI   
Sbjct: 542 IETDTIKLRQILINLLGNAIKFTKQGQVNLNVRTLETPNTEGLICLQFTVSDTGPGIDSS 601

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  + T F Q     +S  +G GLGLPI++      GG   + S   EG      +
Sbjct: 602 GLEAIFTPFVQTRTGQQSQ-EGTGLGLPISRKFARLLGGDITVDSTPNEGSAFHCTI 657


>gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1197

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L  + +        L ++NV++       +   A+L  A+       +R E+ +  KS F
Sbjct: 433 LLESQTRLQAQQAELEQTNVQLEEYAHRLERQKADLLRAQDDLAANAERLEQSSRYKSEF 492

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   LL LIN+ILDLS
Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +SL   ++    + +  A  K++ +     P    S+ +D + + Q+
Sbjct: 552 KVEAGQVSVELETVSLDATLQSLEELFRPMAGAKHLNLVFDRLPGAPDSIVSDGQRVTQI 611

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNAVKFT   G V ++V         I ++D+G GIA  ++  +  +F Q   + 
Sbjct: 612 LRNLLSNAVKFTER-GEVALSVAPADDDMLRIDVRDSGIGIASDKLEMIFEAFQQADGST 670

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++      GG+  + S++ +G      LP 
Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713


>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 1014

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T  V            +     +           LL  
Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + ++  +L   + ++     +             +
Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
               A++   +             +      Y      +  L         I+  + ++ 
Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  A++ N AKS FLA+MSHE+RTPLNAI+G  E++    +    +E   E +  
Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K + +   
Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           I   ++  +  D   +RQV+ NL+ NA+KFT   G + + V        G    I + D 
Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ Q ++   GG   I S    G  V
Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752

Query: 469 IAILPNTRV 477
              LP    
Sbjct: 753 TVALPLREA 761


>gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           YPIII]
 gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 942

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +  LL  + ++ L  + L   V     P+   ++T   +    LD  + G     L
Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246
                +   +    + + +   E    I            ++E+        +KRA+E +
Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHELRTPLN ++GF+     +T+      T  +Y+  I RS  +LL +IN
Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LD S++EA +  L     SL   + E II+L   A EK +E+   I+  +   V  D 
Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
             ++Q++ NLL NA+KFT  G   + V V   + +     + I D G GI+E +   +  
Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   +      G GLGL I + ++   GG    +S++  G      L
Sbjct: 466 AFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515


>gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
 gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
          Length = 578

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/259 (35%), Positives = 146/259 (56%), Gaps = 10/259 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           ++ + L+ +   +++   + ++ AE+ N AKS FLA+MSHE+RTPLN I+G S ++    
Sbjct: 31  SKLNQLLEDRHFSQANIIKAKEEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTE 90

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +    N +  EY+  I  S Q LL LIN+ILDLS+IE+G   LS    +L ++V + I +
Sbjct: 91  L----NPSQAEYLQTIETSSQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITI 146

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +Q +A E+ + +  ++DP L + V  DE  +RQV++NL+SNAVKFT   G V +++ +T 
Sbjct: 147 VQAKASEQGLNLQIQLDPELPTSVMLDEHRLRQVLMNLMSNAVKFTLQ-GSVTLSITYTD 205

Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     SIKD G GI + +   V   F Q   +I     G GLGL I + ++   G
Sbjct: 206 IGDKKASLLFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLG 265

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G   ++S+   G +    L
Sbjct: 266 GSIELKSEKGVGSDFYFSL 284


>gi|149375905|ref|ZP_01893672.1| PAS [Marinobacter algicola DG893]
 gi|149359785|gb|EDM48242.1| PAS [Marinobacter algicola DG893]
          Length = 1197

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 123/260 (47%), Gaps = 8/260 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E      ELEV  +   E ++ AE     K+ FLA+MSHE+RTP+NAI+G   +++   
Sbjct: 459 TEIVQREKELEVLNAELKEQKQEAESAVTVKTAFLANMSHEIRTPMNAIIGVLVLLQEAG 518

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +        +  +     + + LL L+N+ILDLS+IEA   EL      +  +V   + +
Sbjct: 519 LEDHP----RRLVKKAFSASEALLQLLNDILDLSKIEADHIELDIHPFDIDALVHRSVDL 574

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVG 394
             + A+EK +++   IDP+    V  D   + Q+  NL+ NAVKFT  GG   R+     
Sbjct: 575 FAIVAEEKGLKLRVSIDPTTPNRVAGDLLRISQICTNLVGNAVKFTRKGGIDVRIDYRAE 634

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +     I + D G GI   +   V  +F Q   +      G GLGL I++ +      
Sbjct: 635 SQASGYLRIEVADTGVGIKPEDQGRVFENFRQADESTSRNFGGTGLGLAISRRLADLMEA 694

Query: 455 QFLIRSKLREGVEVIAILPN 474
           +  ++S + EG     ++P 
Sbjct: 695 ELTLKSDVGEGSTFQLLVPV 714


>gi|146421491|ref|XP_001486691.1| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + + + + ++  L  +   +   R+ AE  N AKS FLA+MSHE+RTPLN I+G +++  
Sbjct: 3   ALKTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 60

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++     +  +E +  +H     LL +I++ILD+S+IEA R  + +   SL   V   
Sbjct: 61  --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 118

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +  L ++A EK++++  + D S    +  D   +RQVILNL  NA+KFT  G        
Sbjct: 119 LKTLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKK 178

Query: 395 WTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +            + + D G GI + ++  +  +F Q   +      G GLGL I++ +
Sbjct: 179 SSKVVEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 238

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
           +   GG+  + S    G      
Sbjct: 239 ILLMGGEIWVTSDYGSGSNFYFT 261


>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1014

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 146/342 (42%), Gaps = 29/342 (8%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +++  L          V +AL          + I L          +  I+       +
Sbjct: 226 GVTHNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMI 285

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +  S + E+       E            AE  N +KS FLA+MSHE+RTP+NAI+G + 
Sbjct: 286 QGQSLEMERRMRQQLAEQ-NQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTG 344

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    +        K +   I  SG+ LL LIN+ILD S+IEAG+ +L      L   +
Sbjct: 345 LLLDTDLTT----QQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCL 400

Query: 333 RECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E + ++   A++K++ + ++   P   ++  D   +RQ+++NLLSNAVKFT   G+V V
Sbjct: 401 EEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEA-GQVKV 459

Query: 392 TVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           TV                +++D G GIA  +   +  +F QG+ +I     G GLGL I 
Sbjct: 460 TVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAIC 519

Query: 446 QSIMANHGGQFLIRS------------KLRE----GVEVIAI 471
             + A  GG     S            ++ +    G      
Sbjct: 520 VRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFT 561


>gi|17547175|ref|NP_520577.1| composite two-component regulatory (sensor kinase and response
           regulator hybrid) transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17429477|emb|CAD16163.1| composite two-component regulatory (sensor kinase and response
           regulator hybrid) transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 638

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 188/488 (38%), Gaps = 23/488 (4%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69
           +   + P    LGL   + ++ D     L          I    VL V  +  ++     
Sbjct: 28  LTASLRPLLTKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 87

Query: 70  PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126
                W LI L + A       G +   + + +      W   + +     GL W     
Sbjct: 88  LALAGWCLIMLCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAG 147

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   + + E+ ++     ++I ++  A+ +     +  L     ++              
Sbjct: 148 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFALAEQAFPEH 205

Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + +  +L    +F      ++  + V+ +  + E   L      A+   DE ++RA   
Sbjct: 206 GLYVRCVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 258

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KSRFLA+ SH+LR P++A++   E +         +E+    +  +    Q +  L 
Sbjct: 259 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSESLAPLVEQLASGAQTIDLLF 314

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +LDLS++E+ +   +   + L +++ E +      A+ K + + Q+I P      A+ 
Sbjct: 315 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 374

Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +R+ + NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+
Sbjct: 375 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 431

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q     +   QG+GLGL I +  +    G   +RS    G      L         P  
Sbjct: 432 YQVENPERDPSQGLGLGLAIYKECVRLLRGTHGVRSVPGRGSMFWMALRPVPAEIKAPLA 491

Query: 485 NHESTQYK 492
               ++ K
Sbjct: 492 AQPRSEQK 499


>gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 591

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEILLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + +++ +    +   A  KNI +   + + +   +  D   
Sbjct: 424 LALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGKNIHVSVPEKNITPVIIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPLDGKVEVKL-IEHEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 762

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 129/238 (54%), Gaps = 2/238 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  +  +  K+ FLA++SHELRTPL  I+G+++++    +G L+ E  +E +  + ++  
Sbjct: 517 EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPE-VQETLHYMRQASL 575

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +L+ LI++IL+ SR+EAG+  +    + +  IV+  +  +Q + +E  + +   I P L 
Sbjct: 576 NLMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLP 635

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   + QV++NLLSNA+KF    G + +    T G    IS++D G GIA  +   
Sbjct: 636 MIQANAGRLEQVLINLLSNAIKFNRPQGLIEIKAE-TRGEWVRISVRDTGIGIAPADQER 694

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +   F +       +  GVGLGL I + ++ + GG+  ++S   EG      LP   V
Sbjct: 695 IFEEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLPVVPV 752


>gi|329910714|ref|ZP_08275357.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546114|gb|EGF31175.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1105

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                   ++DL A +       ++ R  AE  N AKS FLA+MSHELRTPL+A++G + 
Sbjct: 427 AQNELDRYRNDLEALVTSRTIELEQARDAAESANRAKSDFLATMSHELRTPLHAVIGLTR 486

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++         +   +++  +I  S + L  +I++ILD SRIEAG+ +L     SL  I+
Sbjct: 487 LL----GAAPISPRQRDHADNILLSAEALQTMIDDILDFSRIEAGKLQLEHLPFSLNAIL 542

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH- 390
           R    ++ +   +K +E    IDP +   V  D   ++QV+LNL SNAVKFT  G  +  
Sbjct: 543 RTTATVIGIGLVDKPVEACFDIDPDMPDLVLGDSLRLQQVLLNLASNAVKFTDAGSIIVQ 602

Query: 391 VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           +     +G         +D+G GI   ++ T+   F Q   +      G GLGL I++ +
Sbjct: 603 LLCEPRAGGRIALKFIFRDSGIGIPAAQLDTIFEQFTQADTSTTRRYGGSGLGLAISRRL 662

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                G   + S+  +G      +   R     P
Sbjct: 663 ADLMRGTISVDSQPGQGSTFCFCVELERGAPSGP 696


>gi|150016956|ref|YP_001309210.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903421|gb|ABR34254.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 10/275 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV--IE 275
           KD++        ++  E ++  EE       K+ F+A+MSHELRTPLN I   +++  + 
Sbjct: 354 KDEIGVLANSFNNMLAENKRLLEETVQYEKLKTEFIANMSHELRTPLNIIFSTAQLFNVL 413

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +     LN E  K Y   I ++   L+ L+N ++D+++I++G  +L     +++ +V + 
Sbjct: 414 INRDENLNTEKMKNYTNSIKQNCYRLVRLVNNLIDITKIDSGYMKLELKNGNIVQVVEDI 473

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                   +  +  I    D     +  DE+ + +++LNL+SNA KFT  G ++ V + +
Sbjct: 474 TQSTAEYVEYMSRTIIFDTDNEEKIMAFDEEKLERILLNLISNATKFTEPGDKISVDL-Y 532

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  IS+KD G GI E ++  +   F Q    +  + +G G+GL I ++++  H G 
Sbjct: 533 DMDDHIVISVKDTGRGIPEEKVSQLFQRFKQVERLLNRSHEGSGIGLSIVKALVEMHEGT 592

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             ++S   EG E I  LP   V    PED  + ++
Sbjct: 593 IEVKSIYGEGTEFIICLPVKIV----PEDEGKKSK 623


>gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
          Length = 621

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++       + ++ +IN+
Sbjct: 377 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 434

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ---------EKNIEIFQKIDPSL 358
           +L LSR++ G  ++    ++  D +   +    +  +         EK   I +KI    
Sbjct: 435 LLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQD 494

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +  +  +   +SI D G GI + ++ 
Sbjct: 495 LWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQ-IILSISDQGLGIPKKDLN 553

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL IA+ I+  H G+    S+  +G      LP   + 
Sbjct: 554 KIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFEPMS 613

Query: 479 NF 480
             
Sbjct: 614 EE 615


>gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 643

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 22/282 (7%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +   +++  + E     A         +E  +R  E +  KS FL+S+SHELRTPL +
Sbjct: 368 LNRHLEQLVRERTEDLVNKA------RELEEANQRLRELDEMKSAFLSSVSHELRTPLTS 421

Query: 267 ILGFSEVIELETMGPLNN------------ETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ILGF++++  E                   +  +E +  I   G+ L  LIN++LDL++I
Sbjct: 422 ILGFAKLLNKEFTRNFLPLVSPEGALARKGKRIRENLAIISHEGERLTRLINDVLDLNKI 481

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E+G     +  + + +++      +     +  +E+  +I P L  + AD   M+QV++N
Sbjct: 482 ESGSMGWRDEELDMNEVIEVAASSVSGMFAQTTLELRTEIQPGLPHIVADRDRMQQVLIN 541

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-- 432
           LL+NA KFT   G V +       +   + + D G GI   +   +   F Q        
Sbjct: 542 LLNNASKFTEK-GSVTLRAFPRFSQ-LRVEVVDTGTGIHPEDQSQIFEKFHQTHTDDTMV 599

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  +G GLGL I + I+ ++GG+  + S++  G   I  LP 
Sbjct: 600 NKPKGTGLGLTICREIIEHYGGRIWVESEVGVGSTFIFTLPA 641


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 16/287 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAK 249
           +     +   + + +      +A K  L   ++   +            +  AE  N AK
Sbjct: 477 VDCLLVVIRDVEQRHQLAGELEAYKFHLEELVDQKTADLQRFQQDLITAKDEAERANQAK 536

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S F+A+MSHE+RTPLN +LG ++++E  ++        + Y+  I  SGQ LL  +N+IL
Sbjct: 537 STFVANMSHEIRTPLNGVLGLAQLLEKTSLSV----DQRSYVRRILDSGQQLLTTVNDIL 592

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D +++EAGR E+ ES  SL  +++  I  + +  +               ++  D   + 
Sbjct: 593 DFAKMEAGRLEIEESGFSLHALLQPVIDSVFVEEESSPKFCLDVAPGIPENLIGDRFRIG 652

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           QV++NLL NA+KFT   G V + V        G     SI D G GIA      +   F 
Sbjct: 653 QVLINLLGNALKFTKE-GHVSLHVVSMGLGEKGVILKFSIIDTGVGIALDVQKQLFVPFT 711

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   ++     G GLGL I + ++   GG   + S    G      L
Sbjct: 712 QADSSVTRNYGGTGLGLTICKKLVVAMGGDIGLESSPGAGSTFWFTL 758


>gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 10/255 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L+A+         +  ++AE+    KS FLA+MSHE+RTP+N I G  ++     +    
Sbjct: 356 LLAQSNQLNQDLLKATEKAEQATEFKSIFLANMSHEIRTPINGISGLIDL----CLATEL 411

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++++     S   L++L+N+ILD S+IEAG+  +     SL  I+   I  +  R+
Sbjct: 412 THRQRDFLDKAAYSTNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRS 471

Query: 344 QEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
            EKN+ +  +I P+L  +   D   + Q++ NL +NAVKFT+IG   + V          
Sbjct: 472 YEKNLHLNCEIAPNLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDK 531

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                +S+ D G G+ E +I  +  +F Q   +I     G GLGL I + ++   GG+  
Sbjct: 532 QIKLILSVSDTGVGLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEIS 591

Query: 458 IRSKLREGVEVIAIL 472
           + S    G      L
Sbjct: 592 VNSTPDVGSSFCVEL 606


>gi|295689157|ref|YP_003592850.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295431060|gb|ADG10232.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 645

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 160/402 (39%), Gaps = 36/402 (8%)

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI---YKSATLLIALSISALSN 156
                 W  W+L   +  GL       + P      +       + + LL    + A+++
Sbjct: 96  NDFWDAWLQWMLEDGL--GLLVATPAALLPFKQERLFRAPGGRLERSLLLALTVVVAVAS 153

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA-------------------- 196
           F L   + L+    ++ L+        V    LA  L                       
Sbjct: 154 FALDQFIALTLVMPLLVLTAFRAGPGWVYVSVLATSLVAMSLTANGHGPIAFIAPTDPYR 213

Query: 197 -LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  +   +F + V   +    ++     LE A +     + +AE  + +KS FLA+
Sbjct: 214 QEFMVQLLIASIFATAVPATAALGARNRSAQRLERAFAAVRNAKNKAEAASRSKSEFLAN 273

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N I+G    +    + P      ++ +  +  S   L  L+N++LD++R+E
Sbjct: 274 MSHEIRTPMNGIIGVVGALARTDLAP----KQRDMVHLVETSADSLQVLLNDVLDMARVE 329

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG   +      L    R  + + + +A+EK +    +I P ++     D   +RQV+ N
Sbjct: 330 AGELAIHPEPFDLRTTCRAIVELFRAKAEEKGLSFELEIAPEVAERHIGDAARLRQVLGN 389

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+SNA+KFT   GRV V +  T      +   +++ D G G        +   F Q   +
Sbjct: 390 LVSNAIKFTER-GRVEVRIDATPEVDGVQALALAVVDTGIGFDAETGQRLFARFAQADGS 448

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I     G GLGL I++++     G+  + S   EG      L
Sbjct: 449 ITRRFGGTGLGLSISRALTRLMNGEIEVASTPGEGSCFTVRL 490


>gi|168047043|ref|XP_001775981.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162672639|gb|EDQ59173.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 436

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +  + + D    EL  A      ++KRAE  + AKS FLA+MSHE+RTP++        +
Sbjct: 3   VELENKVDRRTLELRKANEELQTSQKRAEMASHAKSDFLANMSHEIRTPIH----GILGL 58

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +        KE +  +      LL++IN +LDL++IEAGR E+   + ++  +V  
Sbjct: 59  IALLLESELTVDQKESLASVKECADLLLHIINSVLDLAKIEAGRLEVERVSFNIRKMVSS 118

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392
              MLQ RAQE+ +++F ++D ++   +  D   ++Q +LNL+ NA+KFT  G   VH++
Sbjct: 119 TFRMLQARAQERGLKLFWEVDRNVPHSLVGDVGKLQQCLLNLVGNALKFTHEGSVSVHLS 178

Query: 393 VGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
              +           +  + D G GI   ++  +   F Q   +      G GLGL I  
Sbjct: 179 ADRSTLVHAPENVLIHFEVCDTGIGINPDKLKDMFKPFTQADASTSRLYGGTGLGLCIVH 238

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             +   GG   + S+L +G      LP +       E + E++
Sbjct: 239 RFVELLGGTIWVESELGKGSTFQFCLPLSLNNPIPKEGSAEAS 281


>gi|14133665|gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum]
          Length = 1213

 Score =  265 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 153/392 (39%), Gaps = 19/392 (4%)

Query: 115  IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
            +   LC+ L             + +  S    I+  +      +    + LS + +    
Sbjct: 686  LCFTLCFALTINSYYTGGHQSTIRLLMSPVPPISALVLGRKASIQWSLMVLSIYLLFF-- 743

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               A +  H     +  ++  +   F      +  + +  L  Q   D+   E ++  + 
Sbjct: 744  --VANLYGHEYVQGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQ 801

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                +  A E   A+  FLA+MSHE+RTPLN ++G + ++             K     +
Sbjct: 802  LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKAV 858

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
               G  LL L+N+ILDLS++EA +  L      + ++ ++   +L  +A EKNI +  ++
Sbjct: 859  KSCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEV 918

Query: 355  DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY---------I 403
               + S+   D   + Q+++NL  NA+KFT  G  ++ + +                   
Sbjct: 919  SDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISF 978

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             +KD G G+       +  +F Q   +      G GLGL +   ++    G+  + +   
Sbjct: 979  RVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPD 1038

Query: 464  E-GVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
              G     ILP     +   +  +   ++K +
Sbjct: 1039 CDGSTFWFILPLEEGTDQSMQQMNNGARHKAF 1070


>gi|307265850|ref|ZP_07547400.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919125|gb|EFN49349.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 457

 Score =  265 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 144/311 (46%), Gaps = 10/311 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L F  +  A +    +S           L         +         K L    E D+L
Sbjct: 157 LLFILMFFADAAGIFVSFIAGYFVTKRALRPVDYMIKEVREIDAHGLNKRLKIYGEDDEL 216

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               +    + D    R E+    ++ F++  SHELRTP++ I G+ +++  +  G  + 
Sbjct: 217 TRLAKTFNGMLD----RLEDSFKRQNMFVSDASHELRTPISVIKGYIDML--DRWGKEDK 270

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E I  I R    + +LI  +L L++ +    +L++   +L D+++E    +++  +
Sbjct: 271 AVLQEAIEAIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNE 330

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            KNI +  + D    ++ AD+K ++++I   L NA K+T+  G + + VG  + +  YI 
Sbjct: 331 SKNIVVKGQND---INITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSK-AYIK 386

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKD+G GI + +IP +   F +   A      G GLGL IA+ I+  H G   ++S++ +
Sbjct: 387 IKDDGIGIPQEDIPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGK 446

Query: 465 GVEVIAILPNT 475
           G E    LP  
Sbjct: 447 GSEFTITLPLR 457


>gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 536

 Score =  265 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 144/370 (38%), Gaps = 17/370 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA-LSTQAIM 180
             + L      + + L I      ++ +S S  S         +    + +         
Sbjct: 21  AGVDLATFFDVSLDLLVIRDLEGRIVRVSASWASILGYRPEELVGLPILTLVHPDDMPGT 80

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSL 234
              V ++         L       +   +        Q   D + A          A+  
Sbjct: 81  LGSVTEVETRRPGDPVLGHVNRYRHKDGRYVTLEWRAQKFGDRIYAVARDVTAKVAAERA 140

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E +  AE  N AKS FLA+MSHE+RTPLN ++G  + +    + P       E +  +
Sbjct: 141 LVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALARTPLSP----QQAEMVELV 196

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   L  L+ +ILD+SRIE+GR  L      L D +   I  L+  A+EK +    + 
Sbjct: 197 RSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAEEKGLTFRLER 256

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409
             S   V+  D   +RQ++ NLLSNAVKFTA  G+V V V             + ++D G
Sbjct: 257 AESACGVFNGDVVRVRQILGNLLSNAVKFTAQ-GQVSVHVDLLDRGDGAVLLTLEVRDTG 315

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   +I     G GLGL I  ++    GG+    S   EG    
Sbjct: 316 IGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAESAPGEGSRFQ 375

Query: 470 AILPNTRVLN 479
             LP TR+ +
Sbjct: 376 VELPLTRIAS 385


>gi|182413970|ref|YP_001819036.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
 gi|177841184|gb|ACB75436.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
          Length = 635

 Score =  265 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 177/432 (40%), Gaps = 17/432 (3%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
             +   P      ++ L V  A L   + VM   +      +    +L    ++ L    
Sbjct: 53  LVWIDPPALGPRIVLNLIVAVACLLCLRLVMRGRLSRAANQLALTLVLAVHGSVTLVAAT 112

Query: 124 LTLVEPGT---WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FPVVVA 173
           +T  +P +       +  ++    +L A    A   F +  A  + F        PV   
Sbjct: 113 MTAQQPLSVAIQLFAFNIVFLLFAILFAARWVAGVVFAIIVAGHVGFHTLVLQKVPVAPG 172

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L   A   +    + L  +    +     I     ++   +   Q   ++L   +     
Sbjct: 173 LQFAAGTLLRDGLLVLGLLFCLGIILGRLIETAHRRTEEALRQVQNLNENLERLVADRTR 232

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 ++AE  + AKS FLA+MSHE+RTPLN I+  ++++             +E+   
Sbjct: 233 ELQLASQQAEAASRAKSEFLANMSHEIRTPLNGIIASADLMIQR---ADLPAEAREHARL 289

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I +SG  LLNL+ +ILD S+IEAG+  L +    L   V + + +L  RA    +++   
Sbjct: 290 ITQSGDLLLNLLGDILDFSKIEAGQITLEDHVFELESTVTDTVALLASRAATAAVQLQVA 349

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNG 409
           + P+++    AD   +RQV+LNLL NAVKFT  GGRV ++V              I+D G
Sbjct: 350 VAPAVARNFEADSYRLRQVLLNLLGNAVKFTPAGGRVQISVTAAGEGDPRPVRFEIRDTG 409

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+ E  +  +   F Q   +      G GLGL I+  ++   GG+  + S   +G    
Sbjct: 410 IGMDETTLRRIFERFTQADSSTTRRYGGTGLGLAISFRLVEMMGGRLAVESAPGQGSIFY 469

Query: 470 AILPNTRVLNFI 481
             LP   V    
Sbjct: 470 FTLPLRPVDAPA 481


>gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 1172

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 3/296 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L T  +        L   +  +   +   D    EL +A++         +  +  KS F
Sbjct: 438 LETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKSEF 497

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  ++++       L  E  K +   I+ +G  LLNLIN+ILD+S
Sbjct: 498 LANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILDIS 556

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+ E+     S+  +V     + Q  A EK +     I       ++ D + + Q+
Sbjct: 557 KVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQI 616

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNA+KFT   G V + V    G G    ++D+G GIAE     +  +F Q     
Sbjct: 617 LKNLLSNAIKFTEA-GSVSMVVSRHPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADGTT 675

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                G GLGL I++ + A  GG   + S   +G     +LP   V     E + +
Sbjct: 676 NRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEQYVEQDGREPDSD 731


>gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 534

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + I    ++  
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +    +     P+   ++ D+K + QVI N ++NA+KFT   G++ +             
Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTCEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   ++  V   F +      S  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518

Query: 464 EGVEVIAILPNTRV 477
            G       P   V
Sbjct: 519 TGSRFWFTHPYKSV 532


>gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 423

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    E  +        + +E +  K+ F+A+MSHE+RTPLNAI+GF+ ++   T    N
Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+++   LL LIN+ILDLS+IE+GR   + S + L DI +E  ++  L+ 
Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 ++  +      +W D   + QV+LNLLSNA+KFT+  G + +           +
Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E ++ +V   F +         QG GLGLPI + I+   GG+  +RS+L 
Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +G      LP       + E +  S   +C
Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420


>gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1066

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 131/282 (46%), Gaps = 21/282 (7%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +   +  +      R  AE  N AKS FLA+MSHE+RTP+N I+G +++  +      
Sbjct: 653 RDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEIRTPMNGIIGMTDLALMGGCDSK 712

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +     Y+G I  S   LL LIN+ILDLS++E+GR EL + A  L   +   +  L+L 
Sbjct: 713 AS----SYLGFIKESAHSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLRLS 768

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           AQ K +E+   + P +  +   D+  +RQV  NL+ NA+KFT+ G   + + V   +   
Sbjct: 769 AQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNALKFTSWGSITIAIGVAEAADSR 828

Query: 401 ---------QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                    + IS    + D G GI   ++  V  SF   ++       G GLGL I + 
Sbjct: 829 KTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESF--ATLGHDKEYGGTGLGLAITKK 886

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           ++   GG     S+  +G      +   R     P  + ++ 
Sbjct: 887 LVEIMGGTIWAESQPGQGSVFGFTVRLARASEAEPACSEQAA 928


>gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 679

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 148/268 (55%), Gaps = 4/268 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L   +     I+E +  +      ++  E+ ++AKS+FL++MSHELRTPLNA+LGFS+
Sbjct: 411 SELKSVSVSMRDISERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQ 470

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++++   PL+N +  E + +I ++G HLL LINEILDL++IE+G+  +    + ++ I+
Sbjct: 471 ILQMDKSAPLDN-SQSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPII 529

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E +  ++  A+E +IEI       +   V AD   +RQV+LNL SNAVK+    G+V  
Sbjct: 530 EETVAFIKPLAKENDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSF 589

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                  +    +I D+G GI   ++P +   F +      +  +G G+GL  A+ ++  
Sbjct: 590 YCEKI-DKFIRFNILDSGLGIPSAQLPAIFDPFYRL-PITANNVEGTGIGLAAAKQLVEL 647

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GG   ++S+  +G      +P    ++
Sbjct: 648 MGGNINVKSQEGQGSHFWFDIPCAEAVD 675


>gi|21231592|ref|NP_637509.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66768286|ref|YP_243048.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|21113281|gb|AAM41433.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66573618|gb|AAY49028.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1146

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 10/329 (3%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKD 222
                  + +A      +      +     +  A      +    + +S   +     E+ 
Sbjct: 676  RALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLREQAMARSASHLAGIVIERT 735

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + A+L+ +       R +AE  +  K  FLA++SHELRTPLNAILG+S +++ +   P 
Sbjct: 736  RVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP- 794

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  + +  I RS +    +I+++LD+S I +G+  L      +  + R  + ++Q  
Sbjct: 795  --AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPT 852

Query: 343  AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            AQ + I +            + D   ++QV+ NL+SNA+KFTA  G V V++     +  
Sbjct: 853  AQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPEGDVRVSLE-VEEQRL 911

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + ++D G GIA   +P V   F Q          G+GLGL I++ ++  HGG     S 
Sbjct: 912  RLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGASSD 971

Query: 462  -LREGVEVIAILPNTRVLN---FIPEDNH 486
                G     +LP    ++     PE  H
Sbjct: 972  GEGHGATFTVVLPFQHGVSDQRPAPEPAH 1000


>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
 gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
          Length = 2013

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G     +  L V ++ +        L +        L +     +L  + ++
Sbjct: 1224 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 1283

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206
              S F      FL+    ++A S   I       + L                       
Sbjct: 1284 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1343

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
            L +SN ++    A      +++EV     +  R+  EE           KS FLA+MSHE
Sbjct: 1344 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1403

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L+++   E+   I+ +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1404 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1462

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            E+S + I+L+ +V       +    EKN++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1463 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1522

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    +                    ++    G+    S+ D G GIAEG++ 
Sbjct: 1523 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1582

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 1583 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 1638


>gi|332528410|ref|ZP_08404402.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
 gi|332042089|gb|EGI78423.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
          Length = 1127

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 14/344 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
            A+ +   +       V      +  A   +A+    +   SL  +LA   +++  +   
Sbjct: 570 FAVFLGLSALMAFLLGVVYVQESLQGAAHAEALRLPFIKAFSLMAVLAAVCAWWVVLATE 629

Query: 207 LFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             +        Q +     I   +         ++ AE  + AK+R++A M+HELRTPLN
Sbjct: 630 SRRMAHDESERQTQLLQKEIDAHQRTDEALQSAKEAAESASQAKTRYVAGMTHELRTPLN 689

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +ILG+++++     G       +E +  I +SGQH+  LI+ +LDL+RIEAGR  L  + 
Sbjct: 690 SILGYAQILLR---GNALKGGAREAVTTIQQSGQHMHALIDGLLDLARIEAGRLRLDPAP 746

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
           +   + + E   M+Q +A+ K +    +    +   V AD K +RQ+++NLL+NAV+FT 
Sbjct: 747 LPFQEFLSELARMVQPQAEGKGLAFRLETLGRVPAWVRADAKRLRQILINLLANAVRFTD 806

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GR+   V           I+D G GIA  +   +   F +GS   +S+E G GLGL I
Sbjct: 807 R-GRIVFRVDCRHE-VLRFDIEDTGIGIAPQDQERIFMPFERGSAGRRSSEAGTGLGLAI 864

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL-------PNTRVLNFI 481
              +    GG+ +++S++  G      L       P   V N +
Sbjct: 865 THLLTELMGGELILQSEVGHGSTFSVRLYLREIEPPARPVANAL 908


>gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 797

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 9/262 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + +  +    E +++A + + AK  FL+ MSHE+RTPLNA++G + ++           
Sbjct: 407 TDKKRVEREMLEAKEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEN----DPRA 462

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           +  E +  +  SG++LLN+IN+ILD +++E G  +L     S+  +  + I  L + A +
Sbjct: 463 SQIEDLNILKFSGENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATK 522

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401
           K   +    D  +  +  D+  + Q+++NLL NA+KFT   G++ ++V            
Sbjct: 523 KGNILELLYDDQIPHLSGDKTRLYQILMNLLGNAIKFTDQ-GKIILSVKLLEQDAVNASL 581

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  I D G GI E ++  +  +F Q    I     G GLGL I + ++  +  +  ++S+
Sbjct: 582 YFEISDTGIGIPEDKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSR 641

Query: 462 LREGVEVIAILPNTRVLNFIPE 483
              G      L   +    + E
Sbjct: 642 EGAGTTFSFTLRFAKASAAVSE 663


>gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
          Length = 502

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                    ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++          E  +E
Sbjct: 263 KQHEEDVRAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAQ----ADTEEEKQE 318

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I  S + LL LI +ILD+S+IE+G+ E   ++  L +I +        RA+   + 
Sbjct: 319 YLRIIQSSNEFLLQLIGDILDISKIESGKLEFIYTSFRLNEIFQPQERAFSFRAE-PGVR 377

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           I  + D +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G
Sbjct: 378 IIFETDGNDYYIESEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTETG-IYVYVTDTG 435

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA+  + TV   F +  +     +QG GLGL I ++I++   G+  + S+  +G    
Sbjct: 436 SGIAKKHLSTVFDRFVKLDM----FKQGTGLGLSICKTIISILKGEIGVESEEGKGSTFW 491

Query: 470 AILPNT 475
             +P +
Sbjct: 492 FTIPCS 497


>gi|160894573|ref|ZP_02075349.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50]
 gi|156863884|gb|EDO57315.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50]
          Length = 1121

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/431 (23%), Positives = 191/431 (44%), Gaps = 42/431 (9%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           LL+    T F +      + +IT       + +      S     + + +          
Sbjct: 348 LLICFFVTAFLRYESGAGFVIITFCTVPVCIYVTC----SKKTPVKAHGF--------CM 395

Query: 117 IGLCWTLLTLVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            G  + ++ +          LT ++ +A ++I+L      N  +  +  + +   +++  
Sbjct: 396 TGCLFMIIAMYGLLPDGHNRLTDMFLTAMVIISLYQMVELNIFMLVSTEIYYLYALLSDH 455

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            Q       +D  +  M+   L     +                    +IA  +  +   
Sbjct: 456 MQDASGGRDIDDCITDMIIILLGSLMLLV-------------------VIAWNKRLQIRL 496

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + AEE   ++S FLA++SHE+RTPLNAILG +E++  E+  P      KEY   I 
Sbjct: 497 KQNAQEAEEAANSESAFLANISHEIRTPLNAILGMNELVLRESRQPH----IKEYAMYIK 552

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+ LL +I++ILDLS+IE+G+ ++     SL  ++ +    +Q R  EKN++    + 
Sbjct: 553 NSGKTLLTIISDILDLSKIESGKVDIIIERYSLSSLIEDVERSIQKRVMEKNLQFNISVS 612

Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPG 411
           P     +  DE  ++Q+I+NLL+NAVK+T   G + + +   S       +I + D G G
Sbjct: 613 PYMHEYLQGDEVRIKQIIMNLLTNAVKYTEK-GCISLRITGESQDTIQKLFIEVADTGIG 671

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           + + ++  + T F +  +    + +G GLGLPI +S++   GG   ++S   +G      
Sbjct: 672 MRDEDLGKLFTKFERFDLKRNRSVEGTGLGLPIVKSLLDAMGGTIQVQSVYGKGSTFTVA 731

Query: 472 LPNTRVLNFIP 482
           L   ++ +  P
Sbjct: 732 L-TQKIADEEP 741


>gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 989

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 8/319 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKI 214
               + +  + F V      + +    +   S    L        +  ++  L       
Sbjct: 446 HRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFDGERVWVTLSVALQHDASGQ 505

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +        I+E +  +      +  AE  + AK +FLA++SHELRTPLN ILG+++++
Sbjct: 506 TAHVIVIIQDISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGYAQIL 565

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + +      +      +G I +SGQHLL LIN+ILD +R+ AG+ EL    + L   +  
Sbjct: 566 QRDV---RLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGFLET 622

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              ++ +RAQ+K + +     P L   V  DE+ +RQV+LNLL+NAV+FT   G V ++V
Sbjct: 623 IAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDR-GEVTLSV 681

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              +       ++D G G++   +  +   F Q          G GLGL I+Q ++   G
Sbjct: 682 SRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGD-HTRRSGGAGLGLAISQQLVRMMG 740

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+  + S   EG      L
Sbjct: 741 GEIEVTSSAGEGSVFGFEL 759


>gi|283851290|ref|ZP_06368572.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573240|gb|EFC21218.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 656

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 162/377 (42%), Gaps = 28/377 (7%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           V        +L +   A LL+   I    +         +       ++   +       
Sbjct: 158 VASSKQNAVFLFVLFIAVLLVTNGIIFYVSNSSLLEKVSTLQEGTKRIARGDLGYRVPDL 217

Query: 187 I------------SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                         +AG L  +       +  L ++N   L  +  +  L  E E+A   
Sbjct: 218 GNNEFSQMARCFNDMAGRLEASRFELLRKSDELKRAN-AALEDRVAQRTLALEQEIATRK 276

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E  +RA + N AKS FLA+MSHE+RTPLN I+G   +  ++++          Y+   
Sbjct: 277 VTE--ERARQANRAKSEFLANMSHEIRTPLNGIMGMVHLARMQSLDRTT----LSYLELA 330

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S QHLL ++N++LD++++EAG+  L+  A  L       +  L++ AQ K + +   +
Sbjct: 331 DASAQHLLGIVNDVLDIAKMEAGKIRLARQAFDLRREFEATLTPLRIAAQGKGVVLDHAV 390

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKD 407
            P ++  V  D   +RQV+ NL+ NAVKFT   GR+ V V          G+   ++I+D
Sbjct: 391 APDVADHVVGDVGRLRQVLTNLVGNAVKFTGQ-GRIDVRVDREGAADEAGGQRLRVTIRD 449

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+    +  +  SF Q   +  +   G GLGL IA+ ++   GG     S+  EG  
Sbjct: 450 TGIGVPADRLERIFESFEQAHTSAHALYGGTGLGLSIAKRLVELMGGDIRAESREGEGST 509

Query: 468 VIAILPNTRVLNFIPED 484
               +    V+   P++
Sbjct: 510 FAFTI-RLEVVAPAPQE 525


>gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
 gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
          Length = 1386

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 7/313 (2%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              +   L+    +    L+   A +    +S      +      + +L+ +   +    E
Sbjct: 911  AALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRE 970

Query: 228  LEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            LE A+  + + + ++ AE  N AK +FLA++SHELRTPL+ +L  ++++     G +++ 
Sbjct: 971  LERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDA 1027

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              K     I RS +  + LI+++LD+SRI  G+  +    + L  +V+  +  +  +A+ 
Sbjct: 1028 KIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAER 1087

Query: 346  KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            K+I     +D SL  V  D   ++Q++ NLL+NA+KF+A G RV V +         + +
Sbjct: 1088 KSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERME-GSARLQV 1146

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
             D G GI    +  +   F Q   +      G+GLGL I + ++  HGG     S    +
Sbjct: 1147 SDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQ 1206

Query: 465  GVEVIAILPNTRV 477
            G     ILP   V
Sbjct: 1207 GAIFTVILPLMPV 1219


>gi|323692410|ref|ZP_08106646.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
 gi|323503550|gb|EGB19376.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
          Length = 875

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+R +  + AK  FL+ MSHE+RTP+NAI+G + +           E  KE +  I +S 
Sbjct: 487 RERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIKIDQSS 543

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q+LL+LIN+ILD+S+IE+G+ +L+ +  S++ +  E   +++ + ++KNI   + I    
Sbjct: 544 QYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVEN 603

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDN 408
             V+AD   ++QVI+NL SNAVKFT  GG++  +V                  + +++DN
Sbjct: 604 PWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDN 663

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+      +  +F Q      +A  G GLGL I+  ++   GG+  + S+  EG   
Sbjct: 664 GIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRF 723

Query: 469 IAILPNTRVLNF 480
              L   R    
Sbjct: 724 SFTLRFIRAEEP 735


>gi|291527567|emb|CBK93153.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 440

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 15/316 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                V   +            ++  +    +     +   L +  +K +   A   +  
Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190

Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           + ++      +        R + E       ++  F A++SHEL+TPL AI G++E+IE 
Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +  E    +  +I R+ Q LL+LIN+I+ LS +++   +     + L  +V++C+
Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCM 307

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             LQ+ A+++ + +       +  V  + + + +++ NL  NA+++   GG V+VTV   
Sbjct: 308 ETLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G    ++++DNG GI + +   V   F +   +      G GLGL I + I+  H    
Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVQLHDAGL 424

Query: 457 LIRSKLREGVEVIAIL 472
            + S++  G  +    
Sbjct: 425 TLDSEVGRGTTIKVEF 440


>gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1231

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 25/310 (8%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSRFLASM 256
              L +S  ++   Q E   L  ELE      ++ R+         E  +  KS FLA+M
Sbjct: 502 AQTLRRSEEELRLQQEELQSLNEELEEKNGALEKARRDVERKAADLETASRYKSEFLANM 561

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN++L  +  +     G L+ +   E  G I+R+G  LL LIN+ILDLS++EA
Sbjct: 562 SHELRTPLNSLLLLARNLRDNGSGRLDPDEV-EAAGIIYRNGNDLLMLINDILDLSKVEA 620

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G+  L   ++ L D+    +      A+ K I +  +I   L   +  D + + Q++ NL
Sbjct: 621 GKLSLHLESVPLADVAGSIMADFGHVAEGKGISLHHEIGEGLPQAIRTDRRRLEQILRNL 680

Query: 376 LSNAVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +SNA+KFT  GG V             +    +G     S+ D G GIA  +   +  +F
Sbjct: 681 VSNAMKFTETGGVVLRLHLADAADGRPSSRGAAGDMVAFSVIDTGIGIAADKHQAIFEAF 740

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN----- 479
            Q          G GLGL I + +    GG+  + S+   G     ++P           
Sbjct: 741 QQVDGTSSRRYGGTGLGLSITRELARLLGGRVTLASQPGRGSTFTFLVPIEAAAAGNAAW 800

Query: 480 FIPEDNHEST 489
            +P    E+ 
Sbjct: 801 TLPAPQQETP 810


>gi|94264446|ref|ZP_01288235.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455136|gb|EAT05358.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 702

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE  N AKS FLA+MSHE+RTP+N +LG + ++    +    N   +   G I  SG+
Sbjct: 204 DQAETANAAKSEFLANMSHEIRTPMNGVLGMTTLLMDTGL----NREQRHLAGIIQASGE 259

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +IN+ILD S+IEAG+ +L      L ++V      + + A+ KN+ +  ++DP+  
Sbjct: 260 DLLRVINDILDFSKIEAGQLDLEVIDFDLQELVDNFAAAMAIPARAKNLALICELDPATP 319

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAE 414
             +  D   +RQ++ NL+ NA+KFT   G V +    T    ++++    ++D G GI  
Sbjct: 320 RFLRGDPGRIRQILTNLVGNAIKFTEQ-GEVALHFDATEQNSEHLTLRCRVRDTGIGIPA 378

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   +  SF Q   +      G GLGL IA+ +     G   + S   +G E    
Sbjct: 379 DKRDRLFKSFSQADSSTTRQYGGTGLGLAIAKQLAEKMEGAISVTSVAGQGSEFTVT 435


>gi|332306269|ref|YP_004434120.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173598|gb|AEE22852.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 573

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 151/430 (35%), Gaps = 36/430 (8%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
                 +    L +A+                +TL     N ++         K   + +
Sbjct: 21  VAYFFAVLYCALTLAHYFVLQEPFKWVL--CAMTLLTALLNGAVALSTAKIPAKRQSLII 78

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
             + L+          + L L                    I LS  A            
Sbjct: 79  LILLLIASAN------SFLHLWFSEASEHSTNIFVTIIASGIVLSNRAHWTAS------- 125

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                   +    +  + +       ++          T   + +++       ++ +L 
Sbjct: 126 --------ILFNWVGWITISVWLELALIQHFFFAMAMSTLLSWFAHLARKKLVTKQIELE 177

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E ++A     E +         KS FLA+MSHE+RTP+N ++G  E++    +    N 
Sbjct: 178 IERDLAIQHELEAK----AATETKSAFLANMSHEIRTPMNGVIGMIELVSQTEL----NT 229

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K Y+    RS   LL +IN+ILD S+IE G   +      L     E +      A++
Sbjct: 230 DQKNYLATAKRSADSLLIIINDILDFSKIEVGELTIEFVEFDLEQFFEELLHDQHFHARK 289

Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---Q 401
           K + +           V  D   + Q++ NLLSNA+KFT  GG + V     +       
Sbjct: 290 KGLTLALSKGDFHHRHVVGDPYRITQIMNNLLSNAIKFTESGG-ITVHYDLVTLGDNLQL 348

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + IKD G G++E  +P +  SF Q   +      G GLGL I + +     G   ++S+
Sbjct: 349 KVEIKDTGIGVSETALPFLFDSFSQADTSTTRKFGGTGLGLSITKQLCELMNGDISVKSQ 408

Query: 462 LREGVEVIAI 471
           L +G      
Sbjct: 409 LNQGSTFSFS 418


>gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
 gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
          Length = 1468

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 130/266 (48%), Gaps = 15/266 (5%)

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             +    A E    K++F+ ++SHELRTP + I+G S+++    + P    T ++ +  I 
Sbjct: 849  RQAELAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSNLTP----TQRDNVDSIK 904

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            RS   L++LIN+ILD S++E G+  L   +  L+ ++ E +         K I++   + 
Sbjct: 905  RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDLIFTMG 964

Query: 356  ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409
               P    ++ D   +++V+LNL+ NA KFT  G  +  ++  + SG       ++KD+G
Sbjct: 965  RDYPVPPVIFGDRNSLKKVLLNLVGNATKFTESGFVLLEISTDYVSGDQISLRFTVKDSG 1024

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS--KLREGVE 467
             GI E +I  +   FGQ   +      G GLGL   + ++A  GG   + S  +  +G  
Sbjct: 1025 IGIPEDKIEQIFIPFGQVDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQDGKGTT 1084

Query: 468  VIAIL--PNTRVLNFIPEDNHESTQY 491
                +  P +   +++P     + Q+
Sbjct: 1085 FWFSIKVPISS-PSYLPNSVPAANQF 1109


>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 540

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 133/275 (48%), Gaps = 10/275 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + + E +V +      ++ AE  N AKS FLASMSHE+RTP+N ILG  E++    +   
Sbjct: 123 EDVTESKVLREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTDL--- 179

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   +EY+  +  S Q L++ +N++L+ SR++A R EL      L+  V     +  LR
Sbjct: 180 -DPQQEEYLRIVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALR 238

Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGR 399
           A+EK +E    +DP     V  D   +RQ++ NLL NA+KFT   G + +++        
Sbjct: 239 AREKGLETVLDLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEK-GWIALSIRRFPPEDG 297

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G ++   + D G GI   +   +   FGQ   +      G GLGL I + +++  GG   
Sbjct: 298 GLWLEFGVVDTGIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLS 357

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + S+  +G      LP          +  E  + +
Sbjct: 358 LESEEGKGSSFHVRLPFLPAGPAPSREAPEEGEGR 392


>gi|268317404|ref|YP_003291123.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334938|gb|ACY48735.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1074

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 8/324 (2%)

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
             +  F +              L    I+           +    L     +T+  + +  
Sbjct: 742  GVYRFQVRARNAWGMTTPTTTLVV-RILPPWYRTWWAYTLYLITLVTIVVLTWRHYVAQQ 800

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            + +        L   +E  +S      +   E N AK   L++ +HELRTPL+AILGF+ 
Sbjct: 801  RAIQ-MYIATVLGDRIEAMRSRIKLLTRLLREANAAKETILSTTTHELRTPLSAILGFAS 859

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            VI+ ET    +N  +KE++  I  SG  LL  IN+ILDL+R+ +G   +    + + + V
Sbjct: 860  VIKEET----DNPLHKEFLEHIEESGHRLLATINDILDLARLRSGSMVVRRVPVEVTETV 915

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            ++   +L+  A++K ++   ++ P    V+ D   + +V+ NL+ NA+KFT   G V ++
Sbjct: 916  QKVYKLLEPLARKKGLDFRMELPPEPLRVFGDPSAVERVLTNLVGNAIKFTPE-GEVVIS 974

Query: 393  VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            V     +   I+++D G GI+E  +P +   F Q S       +G GLGL IA  ++   
Sbjct: 975  VTA-DEKHVRIAVRDTGVGISEEFLPHIFDEFRQESSGADREFEGSGLGLAIASRLVKLM 1033

Query: 453  GGQFLIRSKLREGVEVIAILPNTR 476
             G+  + ++  +G     +LP   
Sbjct: 1034 EGEIEVVTEKGKGSTFTVVLPRAP 1057


>gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402]
 gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 585

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 6/250 (2%)

Query: 227 ELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           E++         R   EE   +  K  F+A++SHELRTP+  + G++E I    +   ++
Sbjct: 332 EIKQGNGAVAIIRDMTEEKKIDQMKQMFIANVSHELRTPIQMLQGYTEAILDGIVSEKSD 391

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I    + L  L+NE+L+++RI+AG   L+  A  + +++   I+  +  A+
Sbjct: 392 --VDEFLNIILDESKRLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAE 449

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +   E+        S  W D   M QVI N++ NA+++T  G  + +           I 
Sbjct: 450 KHETELQTHYS-HHSKAWLDYDKMIQVITNIIDNALRYTVAGDVISIHTD-EDDENLIIR 507

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GIA   I  +   F +   A    + G GLGL I +SI+  H G   + S + +
Sbjct: 508 ISDTGVGIAPEHIDNIFERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGK 567

Query: 465 GVEVIAILPN 474
           G   +  +P 
Sbjct: 568 GTTFVISIPK 577


>gi|187777044|ref|ZP_02993517.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
 gi|187773972|gb|EDU37774.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
          Length = 464

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   TY+   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G+S  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+  L++  I
Sbjct: 262 IKGWSITLNSN---EVDKEVLKDGLKIIEDESERLSGMVEELLDFSKFVSGKMNLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L+  A    I         L +++ D+  ++QV++NLL NA KFT  G
Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDKNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V + + +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNIKYEEE-YITIFVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            I+  H G   I S+  +G  +   LP 
Sbjct: 434 EIVKLHNGVLHIESEENKGTTISVKLPV 461


>gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 781

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM----TIADNA 453

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 627 GSTFRFTIP 635


>gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 488

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 19/316 (6%)

Query: 163 VFLSFFPVVVALSTQAIMSMH----VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           +F +   +++A      +S      ++ I  A        F   I+Y        I+   
Sbjct: 175 IFSTIIGIILATILAFWLSTSITKPLVQIKTAAQKIANRDFSHRISYQGKDELGDIVQTI 234

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +    + +  +A +  ++ R+           FLA++SHELRTPL  I G++E +    
Sbjct: 235 NQMAAQLEKYIIAYNKREQNRR----------EFLANVSHELRTPLTIIQGYTEALLDGI 284

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   + +  +E++ +I +  + L  + NE+LDL+ IE GR +L    I L +  ++C   
Sbjct: 285 VT--DEKIREEHLKNILQEAERLKAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNA 342

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            + +  EK IE+  +++     V  D   + +V+ NLLSNA+KFT  GG+V   V     
Sbjct: 343 FKTQFFEKGIELELEVNVQDGKVVGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEGEK 402

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             Q I +KD+GPGI E ++  +   F +   A  S   G GLGL I +SI+  HGGQ   
Sbjct: 403 DYQ-IHVKDSGPGIPEQDLEKIFERFYKVDKARSSK--GFGLGLAITKSIVEAHGGQIFA 459

Query: 459 RSKLREGVEVIAILPN 474
           R+    G +   +LP 
Sbjct: 460 RNNPEGGAKFTVVLPK 475


>gi|289628096|ref|ZP_06461050.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646717|ref|ZP_06478060.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867455|gb|EGH02164.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 645

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M        +EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQREYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
 gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
          Length = 554

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I  +I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 554

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I  +I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|307293713|ref|ZP_07573557.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306879864|gb|EFN11081.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 764

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 17/353 (4%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++   +   +      A+       +  +         +  I+ A     A  +   I  
Sbjct: 195 VVGDHVRTTTAIFSALALITVPLIAIATMLVGFATVRSIRAIADATADLAAAQYDIDIGK 254

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSH 258
              K  +  +    E   L A         +E        +  AE  N AKS FLA+MSH
Sbjct: 255 LARKDELGAVVTALETFRLQALEAQRVRQMEEESHRLQLAKSAAESANNAKSDFLANMSH 314

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAILG+++++      P  +E        I  SG HLL LI++ILDLS+IEAG+
Sbjct: 315 ELRTPLNAILGYAQLLRR---DPKLDERQSNAARIIDESGSHLLTLIDDILDLSKIEAGK 371

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377
           +E+  +A+ L         ++++RA+EK +    ++ P L  +   D K +RQV++NLL 
Sbjct: 372 FEICPAALDLRGFASGIADIIRIRAEEKALAFSCEVSPDLPIMMLVDAKRLRQVLINLLG 431

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G    +V +T    +       ++D G GI+  +I  +   F Q     + A
Sbjct: 432 NAIKFTDRGHVGLQVSLTSRSDTEARVRFEVRDTGVGISADKIDAIFQPFEQVGDVQRRA 491

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDN 485
             G GLGL I++ ++   G +F + S+   G +      LP    ++  P ++
Sbjct: 492 -GGTGLGLSISRQLVRLMGSEFEVMSESGRGSQFAFELTLPIDSSISGEPAES 543


>gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1265

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 134/270 (49%), Gaps = 20/270 (7%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE  N AKS FLA+MSHE+RTPLN +LG  +++E   +G       KEY+ +   + 
Sbjct: 880  KEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLETAPLGA----EEKEYVDEAITAS 935

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            + L NL+++ILDLSRIEAG+  +     SL D+      +L   A++K++E+   +D  L
Sbjct: 936  KRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELRFFLDEQL 995

Query: 359  SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGI 412
             S V  DE  +RQ++ NL+ NA+KF+   G + V          +       + D G GI
Sbjct: 996  PSFVLGDEVRLRQILFNLVGNAIKFSDQ-GTISVQAYLLPFAKIAQERILFMVSDEGIGI 1054

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++  +  +   F QG        QG GLGL I + ++    G+  I S    G  V   L
Sbjct: 1055 SDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLGTTVYLSL 1114

Query: 473  PN--------TRVLNFIPEDNHES-TQYKC 493
            P            L  IP  +H S  QYK 
Sbjct: 1115 PFGSSKKATGAISLPNIPLSSHPSPAQYKV 1144


>gi|182677962|ref|YP_001832108.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633845|gb|ACB94619.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 1130

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L  L++ A     +  A++L       A        +  L   L  +   A   F     
Sbjct: 575 LGVLAVLASIIAAILGALYLQAALAPAAERAAIGAMLFTLYFILLIIAGIAAWLFVLTQE 634

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  +     A     I   +       + ++ AE  NLAKSRF+  +SHELRTPLN
Sbjct: 635 SRSVAQEESHRQTALLRREIEAHKRTDQKLQKAKEVAEAANLAKSRFVVGLSHELRTPLN 694

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G+++++E +   P +    +  I  +HRS +HL  LI+ +LD+S+IEAGR  LS   
Sbjct: 695 AIMGYAQILERDVSIPSH---RRNAIRVMHRSAEHLSGLIDGLLDISKIEAGRLHLSRDE 751

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
           +   + +   + M +L+A  K I+        L   V+ DEK +RQ+++NLL+NA+KFTA
Sbjct: 752 VRFGEFLDHLVDMFRLQATAKGIDFVYIRSEHLPAVVFTDEKRLRQILINLLTNAIKFTA 811

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV + V +         I+D G GI+  +   +   F +G  A   A  G+GLGL I
Sbjct: 812 E-GRVTLRVSYRYP-VARFEIEDTGMGISRNDQERIFYPFERGQHAGTYAIIGIGLGLTI 869

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + +    GG+  + S++  G      +
Sbjct: 870 TKLLTEIMGGEICLTSEIGVGSTFQVKI 897


>gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 389

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +V +      +++AEE N  KS  +A+M+HE+RTPLNAI+GF+ ++        + 
Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  ++  S + L  +++E  +    +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ +    + S + ++ D   + Q++ +LL NA+KFT   G V               
Sbjct: 259 TDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +   +   F +      S  QG+GLGL + + I+    G   + S++ E
Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 374 GSTFWFTIP 382


>gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
 gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
          Length = 586

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKRSRFID 466

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 578


>gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
 gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
          Length = 591

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K +++ 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + V  T   G    ++D+G G
Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           I E +IP +   F +   A    ++ G GLGL IA++I+  H G+  + S + EG     
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIFSV 584

Query: 471 ILPNT 475
            LPN 
Sbjct: 585 YLPNR 589


>gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1042

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 9/266 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +    E ++ AE+ + AKS FLASMSHELRTPLN++LG+++++  E     
Sbjct: 567 RDITASKRTQEELHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCE---EE 623

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  ++ +  I +SG+HL  LI EILD+++IEAG  ++    + L  ++   + + + R
Sbjct: 624 LSQRQRKALNVIQQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSR 683

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           AQ K +         + +V  ADE+ + QV++NLL NA+K+T   G V +       R  
Sbjct: 684 AQSKGLAFTFAPGADVPAVVSADERRLCQVLMNLLDNAIKYT-RHGEVVLRT-MMHERAV 741

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++D G GI    +  +   F Q    ++    +G GLGL I++ ++   GG+  + S
Sbjct: 742 CFVVEDTGLGIRPEHLSEIFDVFHQVRDPSMT--VEGTGLGLAISKRLVHLMGGELQVAS 799

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486
           K  EG      L    V    P   +
Sbjct: 800 KPHEGSRFWFELELRPVSAPTPVATN 825


>gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 878

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 16/247 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+ F+ +MSHELRTP+ AI GF++++ +  +G L N+T +E++  I+ + + ++N
Sbjct: 629 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYSNTERMIN 687

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++L++++IE+G  +L   ++ L + +   I  LQ +  +   ++   I P L  + A
Sbjct: 688 LINDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRHQLTISIPPGLPLIRA 747

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------------TSGRGQYISIKDN 408
           D   + Q++ ++L NAVK+T  GG + +                    + R   +SI D 
Sbjct: 748 DAMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRSTLSDNRRYLLLSISDT 807

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++P +   F +G   +K    G GLGL I + ++   GG+  + S +  G   
Sbjct: 808 GVGIRPEDLPRIFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLGGRIWVESTVGVGSTF 867

Query: 469 IAILPNT 475
             I+P  
Sbjct: 868 SIIMPIA 874


>gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1253

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 6/288 (2%)

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              + +S   +     E+  + A+L ++       R +AE  +  K  FLA++SHELRTPL
Sbjct: 826  QAMARSASHLAGIVIERTRVDAKLALSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 885

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            NAILG+S +++ +   P   E     +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 886  NAILGWSRLMQSQNFAP---ENLANGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQPE 942

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFT 383
               +  + R  + ++Q  A  + I +       S    + D   ++QV+ NLLSNA+KFT
Sbjct: 943  HFDIAGLARSTVELMQPAALAREIALELDAPAGSELWFFGDAGRLQQVLTNLLSNALKFT 1002

Query: 384  AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            A GG V V +         + ++D+G GIA   +P V   F Q          G+GLGL 
Sbjct: 1003 ASGGNVRVGLD-VEDGRLRLCVQDSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLGLS 1061

Query: 444  IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            I++ ++  HGG     S    +G     +LP    ++ +   + ES+Q
Sbjct: 1062 ISRQLVDLHGGSLGASSAGEGKGALFTIVLPFEHGVSGLRPPSAESSQ 1109


>gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 591

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI +   +       +  D   
Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSGSVMIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+I+NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
          Length = 618

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++       + ++ +IN+
Sbjct: 374 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 431

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ---------EKNIEIFQKIDPSL 358
           +L LSR++ G  ++    ++  D +   +    +  +         EK   I +KI    
Sbjct: 432 LLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQD 491

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M QVI N+++NA+K++  GG + V +  +  +   +SI D G GI + ++ 
Sbjct: 492 LWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQ-IILSISDQGLGIPKKDLN 550

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A    + G GLGL IA+ I+  H G+    S+  +G      LP   + 
Sbjct: 551 KIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFEPMS 610

Query: 479 NF 480
             
Sbjct: 611 EE 612


>gi|182412780|ref|YP_001817846.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839994|gb|ACB74246.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 734

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 11/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            +    E  + L  E   RAE     K+ FLA+MSHE+RTP+NAILGFS+++  E     
Sbjct: 205 RIALRKEQNERLLAEQAIRAESAAREKNAFLANMSHEIRTPMNAILGFSDLLATEL---P 261

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   ++ +  I  S   LL LIN+ILDLS+I+AG  EL      L ++      +   +
Sbjct: 262 ADSKARQRVRAIRESATSLLQLINDILDLSKIDAGVVELHPEPTDLRELSDFMHTVFAQQ 321

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395
           A  K + +  +IDP+L   +  D   +RQ+++NL+ NA+KFT   G V + + W      
Sbjct: 322 AARKTLVLECEIDPALPHALMLDRSRLRQIVVNLIGNAIKFT-EHGTVKLGIRWAHHPAN 380

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G GI   +   +   F Q        +QG GLGL I + I    GG 
Sbjct: 381 RGSGTLEIEVADTGVGIPPEKQREIFQPFVQVDPQRAGEKQGSGLGLSIVERITQRMGGT 440

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             ++S++  G     I P+  +   +PE+ 
Sbjct: 441 VTLQSEVGRGTRFRLIFPDVTISLRLPENA 470


>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
 gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
          Length = 1031

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 165/450 (36%), Gaps = 20/450 (4%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV-YAANLSLGK 91
           +  +     ++ L        ++V              +   W +    +  A       
Sbjct: 234 YRMQRNEKSLQYLGLFCLSAMVYVATHGEKLLSAVWPDLPYEWFIRIQMIFSAFVYYFLL 293

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           + +   ++               +   +      ++    ++     IY  +  +I    
Sbjct: 294 RYIAETVQGLVHRWALYLSNAATL---IAVGSGLILPTVVFSELEPVIYLFSVFIILYIT 350

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           + +   +   +    F  + +                +  +    L+     +  +    
Sbjct: 351 TVMGRGIWRRSEDTGFMLIGI-------------LSIMVVITVHVLNLMGIYSNLIIVPL 397

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
             +L    +   L        +  D+  +R    +  K  F+A+ SHELRTPL+ I+  +
Sbjct: 398 EMLLFVVTQALLLAQRFSTTFTEVDQLSRRLLTLDGLKDEFMANTSHELRTPLHGIVNIA 457

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           + +     G L+ +  KE +  I  +G  L  L+N+ILD S+++ G   L    + L  +
Sbjct: 458 QSLLDGASGALSAKQSKE-LSMIVSTGNRLSTLVNDILDFSKLKNGEIVLHRQPVDLKAV 516

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  + ++   +  K + + Q+   +L  +  DE  +RQ++ NLL NAVKFT   G V V
Sbjct: 517 TQSVLEVVTHLSAGKPLSLEQQWPENLPWLDTDEDRLRQILYNLLGNAVKFT-ESGTVRV 575

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           T          IS+ D G GI+E  +  +  S+ Q   A      G G+GL I + ++  
Sbjct: 576 TADIIH-GHVRISVSDTGIGISEERLVDIFKSYDQIGYASDREYSGTGIGLSITKKLVEL 634

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GG+    S+   G      LP+T +    
Sbjct: 635 GGGEIWAESEPGVGSVFHFTLPSTLIPPQT 664



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 22/113 (19%)

Query: 375  LLSNAVKFTA----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            ++ NAV+        GG V + +     R   IS+ DNG G++  ++ ++L        +
Sbjct: 929  IVENAVRHGVTRQLSGGTVRIQIHEREER-ITISVTDNGVGMSPDKVNSLL--------S 979

Query: 431  IKSAEQGVGLGLPIAQ----SIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                  GVGL     +     ++  +G    I S+L  G  V   +P +  L+
Sbjct: 980  GAHHTGGVGL-----RNIHARLLTLYGKGLQIESRLGFGTSVSFEVPLSTKLD 1027


>gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1093

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +     +++ AE  N AKS FL++MSHE+RTP+N ILG + V+    +     
Sbjct: 696 ITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPMNTILGMAGVLAASDL----P 751

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             + E +  I  +G  LL L+N+ILDLS+IEAG   + E A  ++ +  +   M++  A 
Sbjct: 752 PKHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKACDIVALAGKLTDMMRPDAA 811

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399
            K + +   +  +L   +      +RQV++NLL NAVKFT   G + + +G       G 
Sbjct: 812 RKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTDQ-GEIVLELGREDHADTGA 870

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GI   +   +   F Q + +      GVGLGL I   ++   GG   + 
Sbjct: 871 WLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYGGVGLGLAICNKLVHMMGGSIRVD 930

Query: 460 SKLREGVEVIAI 471
           S   +G      
Sbjct: 931 STPGQGSVFTVS 942


>gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 591

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI +   +   +   +  D   
Sbjct: 424 LALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+I+NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 565

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + EL  + ++L ++    I  LQ +A  K I+I  +I+  +  +
Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ +++   +V V V   +    Y+ I+D G GI+E +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  ++S   +G     + 
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVLF 562


>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 1307

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
               +  +G     +  L V ++ +        L +        L +     +L  + ++
Sbjct: 557 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 616

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206
             S F      FL+    ++A S   I       + L                       
Sbjct: 617 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 676

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
           L +SN ++    A      +++EV     +  R+  EE           KS FLA+MSHE
Sbjct: 677 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 736

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN++L  ++++       L+++   E+   I+ +G  LL LIN+ILDLS++EAG+ 
Sbjct: 737 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 795

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           E+S + I+L+ +V       +    EKN++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 796 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 855

Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
           AVKFT  G    +                    ++    G+    S+ D G GIAEG++ 
Sbjct: 856 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 915

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +  +F Q          G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 916 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 971


>gi|240145433|ref|ZP_04744034.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202562|gb|EEV00847.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 867

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AK+ F+++MSHE+RTP+N+I+G +E++      P      +EY+ +I  SG+ LL
Sbjct: 261 EDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGRVLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            +IN++LD S++EAG+ +L +       +  +  I ++ R     +E+   ID  +   +
Sbjct: 317 TIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIPCKL 376

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             D   +RQVI+NL++NA+K+T  G     VHV    T     Y  + D G GI + +  
Sbjct: 377 KGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKEDQK 436

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  +F +  +      +G GLGL I+Q+++   GG   + S+  +G      +
Sbjct: 437 ILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 812

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 10/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E +   + 
Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYTPKPVC 663

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ +  E       +  P  +   AD   + QV+ N +SNA+KFT   G
Sbjct: 664 LYQFCAMMVQKMRNKVSEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V     + +   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I+   GG   + S+L +G      LP 
Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805


>gi|296186460|ref|ZP_06854863.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296048907|gb|EFG88338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 554

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 20/356 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLAT 195
           ++    A L+I L +  + N  L    + +F  ++ A+    I   +          +  
Sbjct: 165 ISFTNFALLIIGLYLLNVPNSKLHPQTYNAFLVMIFAILLSIINYYNFAKSFIQKSEILN 224

Query: 196 ALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSD--------ETRKR---- 241
                     HL +   +  +   QA  + L       K+  +        E +KR    
Sbjct: 225 KAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKAELEAIQSNIKYEEKKRLLNK 284

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYKEYIGDIHRS 297
           A E    ++ F A++SHELRTPLN I    +++    +   +   N     +Y+  I ++
Sbjct: 285 AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTIKQN 344

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL LIN ++D+++++AG +E++ S   ++ I  +  + +    + KNI +    +  
Sbjct: 345 SYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDTEVE 404

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   + +++LNLLSNAVKFT   G ++V + + S     ISIKD G GI +   
Sbjct: 405 EKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNI-YDSTDKVIISIKDTGIGIDKSMQ 463

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F Q   +I    +G G+GL + +S++  H GQ  + S+L EG E I  LP
Sbjct: 464 KLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 519


>gi|225027308|ref|ZP_03716500.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
 gi|224955370|gb|EEG36579.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
          Length = 943

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              +       + L    V  +   A K    A  E A+ +++   + A+  N AK+ FL
Sbjct: 513 VVTVWVLLIFGWLLTTMAVIAMRLSARKKAQKAAQETAEEMAELA-EHAQATNKAKTAFL 571

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSH++RTP+NAI+GF+ +     M    ++  K  +  I  S ++LL+LIN++LDL+R
Sbjct: 572 SHMSHDMRTPMNAIMGFTSI----AMKNNPSDEVKNCLEKIDESSEYLLSLINDVLDLTR 627

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372
           +E+G+ + +     L  I    + + +     ++I    + + + + +V  D   +R V+
Sbjct: 628 VESGKVKYNPVPADLKSITDSALDITKGFLTNRDISFKIQREEAKIPNVLVDPVRLRDVL 687

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +N+LSNAVKFT  GG +          G      +  I D G G++E     V   F Q 
Sbjct: 688 VNILSNAVKFTPDGGTITFEARCQEKGGDGYINMHYRISDTGIGMSEEFTKEVFEKFAQE 747

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +++   GVGLG+ I +  +   GG   ++SK  EG      +P  
Sbjct: 748 DSDVRTQYHGVGLGMAIVKKYVDMVGGTISVQSKKHEGTTFTVDIPLE 795


>gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 782

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-V 230
           +A      +S           + T ++        L +S  ++++  A+       LE  
Sbjct: 441 LADGRWLQISERRTKDGGYVSVGTDITTLKRHQERLVESERQLIATIADLKRSRRTLELQ 500

Query: 231 AKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + L+D        + +AE  N +KS FLA+MSHELRTPLNAILGF+EV++ E  G L +
Sbjct: 501 TQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLGS 560

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E Y+EY  DI  SG +LL++I++ILD+SRIEA R  L +  + + + +   + ++   A+
Sbjct: 561 EKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPAR 620

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K + +  ++    + V ADE+ + Q+++NLL NAVKFT   GRV V     +    +I 
Sbjct: 621 AKGLTLSVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRR-ALDAVHIF 678

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G GI +  +P +   F Q       + +G GLGL I++S+   HGG+  IRS++  
Sbjct: 679 VEDSGIGIPKAVLPKLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSEVGC 738

Query: 465 GVEVIAILP 473
           G  V+  LP
Sbjct: 739 GTIVLVRLP 747


>gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 537

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           + + +L I L             +T    +S ++ L  Q   +  + +  + +   +  R
Sbjct: 86  LYIDLLTIPLTDKDGRITGLIQIVTDTTQRSVIEQLRSQQRNELQLLKDRLQRQNVELAR 145

Query: 240 KRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             A   +    K  FLASMSHE+RTPL AILG  +++  + +GPL++E     I  I + 
Sbjct: 146 INASLLKTTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVGPLSDEQM-GAIDGIKKG 204

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHLL+LIN+ LD++++EAGR EL  + +S+ D+      ++    +  N+ +   ID +
Sbjct: 205 SQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVADLIRRANLSLIFDIDSA 264

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
           +  + AD + +RQ+++NLLSNA+KFT  GG+V + V           ++ D G GI+  +
Sbjct: 265 VQVILADARRLRQILINLLSNAIKFTPAGGKVGLEVRGEPERGAVRFTVWDTGIGISAED 324

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   F Q     +    G GLGL +   ++  HGG   + S++  G      LP
Sbjct: 325 AVRLFEPFQQIESERQKEVTGSGLGLALVAKLVRLHGGSVRVESEVGVGSRFHVTLP 381


>gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
 gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
          Length = 1148

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 144/254 (56%), Gaps = 13/254 (5%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I E + AK    E  ++ EE N +++RF +SMSHE+RTP+N+ILG +E+I  +      
Sbjct: 185 FIEENKRAK----EETRKFEELNKSQNRFFSSMSHEIRTPINSILGLNEIILRQ---EDA 237

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           ++  K+  G+I  +G+ LL L+N+ILD+S+IEAG+ ++     S+  ++ E + M+ LRA
Sbjct: 238 SDEIKKDAGNIQGAGRMLLALVNDILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRA 297

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
           ++K + +  +IDP+L   ++ DE  ++Q+++NLL+NAVK+T   G V + +     +   
Sbjct: 298 EQKGLTLNVEIDPTLPQELFGDEVRIKQILVNLLNNAVKYTNE-GTVTLHIEKEDIKEEK 356

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                S+ D G GI E  IP +  +F +      +  +G GLGL I + ++    G+  +
Sbjct: 357 VRIIFSVSDTGMGIKEDSIPYLFDAFQRIDEEKNTKIEGTGLGLSIVKQLVELMDGEISV 416

Query: 459 RSKLREGVEVIAIL 472
            S   +G      L
Sbjct: 417 NSVYAQGSNFTVSL 430


>gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 389

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +V +      +++AEE N  KS  +A+M+HE+RTPLNAI+GF+ ++        + 
Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  ++  S + L  +++E  +    +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ +    + S + ++ D   + Q++ +LL NA+KFT   G VH              
Sbjct: 259 TDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVHWGYQEKENGQIRFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +   +   F +      S  QG+GLGL + + I+    G   + S++ E
Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 374 GSTFWFTIP 382


>gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 652

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 6/260 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE-LETMGPLNNETYKEY 290
           K L +E      E N  ++ F A++SHE +TPLN I     +IE      PL  +  K Y
Sbjct: 382 KKLLEEEL----EYNKLRTEFFANLSHEFKTPLNVIFSALHLIEWSLDKNPLKKDKIKSY 437

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  +   LL LI  +LD+++I+A  Y+L+     ++ IV+  +  ++     K  +I
Sbjct: 438 LKTITHNSYRLLRLITNLLDITKIDANSYQLNICNCDIVKIVKSAVNSVKGHINNKTRKI 497

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
               + +   +  D   + +++ NLLSNA+KFT  G ++ V +    G+   I +KD G 
Sbjct: 498 VFNTNVNEKIIACDPFDIERILYNLLSNAIKFTGEGDKITVEIK-DRGQSLNIIVKDTGI 556

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E     +   F Q   + +   +G GLGL + +S++  HGG   I SK  +G   I 
Sbjct: 557 GIPEEMQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSLVELHGGSISIESKPGKGSTFII 616

Query: 471 ILPNTRVLNFIPEDNHESTQ 490
            LP  +V N + E+  + ++
Sbjct: 617 KLPVFQVSNNLCENTRKKSK 636


>gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 747

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 159/311 (51%), Gaps = 15/311 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-------DLIAE 227
           + Q +++    D++ A      +       + +    +       E+          I  
Sbjct: 202 ALQYMLNHWEGDLTTAPPWVAEIDLIHRDGHVVQAEIITSFVRDEEQRLIVLGVARDITA 261

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + A+      R++AE  N AKS FLA++SHELRTPL+A+LGF++++           T 
Sbjct: 262 RKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLAN---DNNLTPTQ 318

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +EY+  I+RSG+HLL LINE+LDL++IEAGRY  + + +++  ++ +  ++ + RA+ K 
Sbjct: 319 QEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIEDVQLLFRNRAEAKQ 378

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + +      ++ + + +DE  +RQ+++NLLSNA+KFT + G VH+ V     +    +++
Sbjct: 379 LHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDV-GSVHLHVIR-EEQRLLFTVE 436

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
           D G GI   +   +   F QG    +     GVGLGL I+  +    GG   + S+    
Sbjct: 437 DTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLIGGDLSVYSEGRGC 496

Query: 465 GVEVIAILPNT 475
           G     ++P  
Sbjct: 497 GSRFTLVIPLQ 507


>gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 476

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/287 (36%), Positives = 160/287 (55%), Gaps = 9/287 (3%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            L  ML  A+         L      ++  +AE       ++  K  +D   +   E N 
Sbjct: 193 VLGAMLVIAILLVAAFGVQL------LVLRRAESRLHQEHMQRLKITADYAVEH--EANR 244

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKS FLA+MSHELRTPLNAI+GFSEV++ ET GP+  + Y EY  DI+ +G HLL++I+E
Sbjct: 245 AKSAFLANMSHELRTPLNAIIGFSEVLQTETFGPIGQKRYIEYATDINMAGYHLLHVIDE 304

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LDLS+IEAG+ +L+ S I    ++   + ML   ++   +EI + +  ++  +  DE  
Sbjct: 305 VLDLSKIEAGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEIQRALTATIPVMETDEGK 364

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQ++LNL+SN++K+T  GG V V+    +      I+I D G G+++ E+   +T FG+
Sbjct: 365 LRQIVLNLVSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTGVGMSKDELALAMTPFGR 424

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A+     G GLGLP+ +S +   GG F I S    G  V   LP
Sbjct: 425 IDSAMSYTRGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVSIQLP 471


>gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 884

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 6/242 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R  A++ + AK  FL++MSHE+RTPLNAILGF  ++  + +    ++ +++Y+  I
Sbjct: 267 LIDARLEAQKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDQDL----SKQHRKYLEII 322

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG++LL++IN+ILD S++ +G + +     S+ + +   + +    A  K I I   I
Sbjct: 323 LNSGENLLSIINDILDFSKLRSGEFTIEPRIFSIHNEISHTLELFVASANLKEITITSFI 382

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           DP +   ++AD   ++Q++ N LSNA+KFT +GG +HV       R   +S++DNG GIA
Sbjct: 383 DPVIPKELYADSLRIKQILSNFLSNAIKFTRVGGHIHVEATC-KNRTLRVSVQDNGIGIA 441

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            G+I  + T+F Q   A      G GLGL I   +  +  G   + S+L +G      LP
Sbjct: 442 AGDISNIFTAFTQAGGAEVEHMVGTGLGLSICNQLSKHMNGSVHVVSELGQGSTFWVQLP 501

Query: 474 NT 475
             
Sbjct: 502 VE 503


>gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 466

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTHQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI +  +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDKEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 633

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 154/295 (52%), Gaps = 17/295 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           Y      + +     +   +      A++   + ++ A+  N AK+ FLAS+SHELRTPL
Sbjct: 119 YGWNPEELNLAKLVGQFLAIAQARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPL 178

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++  +     +  T    +  I+RSG+HLL LIN+IL++S+IEAGR  L+E 
Sbjct: 179 NAIIGFSQLLHRDPSLAPHRPT----LDIINRSGEHLLELINDILEMSKIEAGRTTLNEK 234

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            I    ++     + QLRAQEK + +  +  P +   +  D   +RQV++NLL+NA+KFT
Sbjct: 235 IIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFT 294

Query: 384 AIGGRVHVTVG-----WTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A GG V + V       T          +  + D GPGIA  E+  +   F Q    +KS
Sbjct: 295 AQGG-VTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKS 353

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             QG GLGLPI+Q  +   GGQ  +RSK+ +G      +P   +    P     +
Sbjct: 354 -CQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSA 407


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/394 (25%), Positives = 171/394 (43%), Gaps = 20/394 (5%)

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
             R    +  +       +L +        ++     +A  +IA ++       L     
Sbjct: 562 SARNSYTLPLLYEDRLQGVLEVATLNPLNTQHRQFLDAACQIIAATLFT----SLQRERI 617

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
            +   +  A + +A    H L ++ A +                 +       Q  +   
Sbjct: 618 ANLLVLSKAATQRAEAQSHQLQLANAQLEEQQQQLQQQTEELQQSNTQMEHQQQLLQQQA 677

Query: 225 I------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                    L+ ++   ++   + EE +  KS FLA+MSHELRTPLNAI+  S ++  + 
Sbjct: 678 EELRINNEALQHSQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDE 737

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G L+ E+  E    I+ +G  LL LIN+ILDLS++EAGR E+    +   ++V E   +
Sbjct: 738 TGRLDQESI-ERTRVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPL 796

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  AQEK IE+    D       +D + + Q++ NLLSNA+KFTA G  + + +  +  
Sbjct: 797 FRDSAQEKKIELRFD-DQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGSVI-LRLAKSDH 854

Query: 399 RG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 +S+ D G GI++ ++P +  +F Q   +I     G GLGL I         G+ 
Sbjct: 855 PQYPIRLSVTDTGIGISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEV 914

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + S+  +G +   +LP        P +N E  Q
Sbjct: 915 ELHSEEGKGSQFTLLLPLAH-----PHENTEHGQ 943


>gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 784

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 16/266 (6%)

Query: 234 LSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVI-----ELETMGPLNNE 285
              E +K  EE    +  K+ F  +++HELRTPLN I G  +++     + E        
Sbjct: 504 EQKEAKKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFGALQLLELDFKQDEIEKKEALL 563

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + I  + ++   LL L+N I+D+++IE+G Y+L    + ++++V    + +    + 
Sbjct: 564 GVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDIVNVVENITMSVSEYMEI 623

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           + I +          +  D   M +++LNLL+NA+KFT  GG++ V +         ISI
Sbjct: 624 RGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQIKVNMYEKEENM-MISI 682

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI E  I  +   F Q   ++  + +G G+GL + +S++   GGQ  ++SK+ +G
Sbjct: 683 QDTGIGIPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSLVELQGGQITVKSKIGQG 742

Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491
            E I  LP   +       ++EST+Y
Sbjct: 743 SEFIIALPIGLL-------SNESTEY 761


>gi|255533357|ref|YP_003093729.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255346341|gb|ACU05667.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 706

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 8/238 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KRA +++ +KSRFLA+MSHE+RTPLN+++GFSE +    + P      K+ +  I  S +
Sbjct: 328 KRAAQDSHSKSRFLANMSHEIRTPLNSVVGFSEQLSQGILSP----EQKDQVDAIRNSSE 383

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSL 358
            LL+L+NEILD S+ E G+  L        D + E    + + A  KN+ +  K+     
Sbjct: 384 MLLSLVNEILDFSKYEVGKINLENVPFLPEDEIMEVFNSMNVLAINKNLLLENKVSLEKG 443

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             +  D   ++Q+I+NLL+NA+KFTA G    +V++ V         + ++D G GIA  
Sbjct: 444 ICLAGDRLRLKQLIMNLLTNAIKFTASGKVTLKVNLAVHGKKHALLKVQVEDTGIGIAPE 503

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   F Q   + KS +QG GLGL I + I+   GG+  + S + +G      +P
Sbjct: 504 DQEFIFDEFAQVYSSTKSRQQGTGLGLAICKKIVELQGGKISVNSVMGKGSVFSFEIP 561


>gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 655

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 8/254 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E         +   RAE+    KS FLA+MSHE+RTPLN +LG ++V+    +   
Sbjct: 244 RDVREERRKAHELRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLGMAQVLAHGKL--- 300

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   E +G I  SG  L+ L+N+ILDLS+IEAGR +LS     L   +     + +  
Sbjct: 301 -TEAQAEQVGVILDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLRHKLSGLFKLHEAA 359

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSG 398
           A EK I I   +DPS+   +  D   +RQ + NLLSNA+KFT+ G  + V       +  
Sbjct: 360 ANEKGIGIRLFVDPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEVMLVVTSEPVQSGA 419

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + + D G GIA  ++  +  SF Q   +      G GLGL I + +    GG    
Sbjct: 420 HRVIMHVSDTGVGIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSITRRLARMMGGDVTA 479

Query: 459 RSKLREGVEVIAIL 472
            S++ +G       
Sbjct: 480 VSQVGKGSIFTLKF 493


>gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H]
 gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H]
          Length = 1000

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 17/285 (5%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRT 262
            L K N++ L       +L    E   S S      +++A+E N AKS FLASMSHE+RT
Sbjct: 425 RLHKENLEQL-INIRTQELRFTNEKLNSESKAHALAKQQADEANRAKSVFLASMSHEIRT 483

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G  E++    +        ++Y   I  SG+ LL+++N+ILD S+IEAG   LS
Sbjct: 484 PMNGMIGTLELLTDTKLTS----EQQKYAQTILYSGESLLDILNDILDYSKIEAGHIALS 539

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVK 381
             AI L  +  + + +++ RAQ K++++  +   ++ +   AD   +RQ+++NL++NA+K
Sbjct: 540 YRAIDLGKLGEDVVHLMRARAQNKSLQLHFEKKGNIENWRVADLGKLRQILINLINNAIK 599

Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   G + +++G              S+ D G GIA+ +   V  +F Q      +   
Sbjct: 600 FTQR-GSIVLSIGVNDESSSGDSEVTFSVTDTGCGIAKDKQADVFQAFTQVDNLQSAV-- 656

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL I Q +++   G   + S+   G      +P  R     
Sbjct: 657 GTGLGLAICQRLVSAMQGTLSLESEENRGSCFAFTIPLARASAEA 701


>gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
 gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
          Length = 565

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + EL  + ++L ++    I  LQ +A  K I+I  +I+  +  +
Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ +++   +V V V   +    Y+ I+D G GI+E +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  ++S   +G     + 
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIGVKSAPGKGSIFKVLF 562


>gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 581

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 8/259 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +       + AE  N AKS FL+ MSHE+RTP+N I G + + +     P      ++ +
Sbjct: 187 RKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIAKKSLNDPG---KLQDCL 243

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S  +LL+L+N++LD+SRIE+G+ EL     +L ++     +M + +A++  I + 
Sbjct: 244 NKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFERIYVMFKQKAEDAGISLE 303

Query: 352 QKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IK 406
            +  D  + SV  D   + QV +NL+SNA+KFT  GGRV +    T  + Q +S    + 
Sbjct: 304 FQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILEAHETEIKDQEVSLQFTVT 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E     +   F Q          G GLGL I  + +   GGQ  + SK  EG 
Sbjct: 364 DSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNFVELMGGQISVYSKTGEGS 423

Query: 467 EVIAILPNTRVLNFIPEDN 485
                +   R      E  
Sbjct: 424 RFTVDITLQRPPAAQIEQE 442


>gi|16127449|ref|NP_422013.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236261|ref|YP_002518698.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13424901|gb|AAK25181.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965434|gb|ACL96790.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 657

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 14/364 (3%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAIMSM 182
           TL  P   + + +           L+ +   +  L  A+F     + + L+      ++ 
Sbjct: 146 TLQRPIKLSSQTVGTLVLVAKRPGLAQTLARDLALTGALFFGAAGMAILLANSLARRLAQ 205

Query: 183 HVLDISLAGMLATALSFFTYITYH----LFKSNVKILSCQAEKDDLIAEL-EVAKSLSDE 237
            +  +S A         F  +       +F+S +   +    + +   +    A +   +
Sbjct: 206 PMERLSEAMHETAVGGRFKALEETADDDVFRSLIASFNHLVARLECNDQDLRGAMAELVK 265

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R  A   N+ KS FLA+MSHE+RTPLN +L  ++V+ ++ +    ++  +E +  I  S
Sbjct: 266 ARDDANAANVLKSHFLANMSHEIRTPLNGVLAMADVMAMDQL----SDIQRERLAVIRES 321

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  LL ++N++LDLS+IEAGR E+ +    +  + +        +A+ K +     + P 
Sbjct: 322 GAVLLGVLNDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRETFVPQARAKGLAFEVGVAPE 381

Query: 358 LSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
              +W  D   +RQ++ NL+SNA+KFT  G           G G  I + D G GI+   
Sbjct: 382 AQGLWRGDADRLRQILGNLISNALKFTLDGAVAVRFASAEDGSGLRIDVADTGIGISPEI 441

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPN 474
           +P +   F Q          G GLGL I + + A   G   ++S+   G     +  LP 
Sbjct: 442 LPRLFDKFVQADSTTTRRFGGSGLGLAICRELAAMMNGSIKVQSREGRGSTFTVLVGLPR 501

Query: 475 TRVL 478
              L
Sbjct: 502 EETL 505


>gi|255305464|ref|ZP_05349636.1| two-component hybrid sensor kinase/response regulator [Clostridium
           difficile ATCC 43255]
          Length = 801

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                   +     D+ R+ A E N AKS FLA+MSH++RTP+NAI+G + + +      
Sbjct: 267 LRFFVMTRLQLQELDKNREMALEANKAKSEFLANMSHDIRTPMNAIVGMTAIAKAHI--- 323

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  K  +  I  S +HLL LIN++LD+S+IE+G+  L+   ISL +I+   + ++Q 
Sbjct: 324 DDQEQVKNCLRKITLSSKHLLGLINDVLDMSKIESGKLALTMEQISLREIIEGIVSIIQP 383

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           + + K       I+  L+  VW D   + QV+LNLLSNA K+T  GG + + +       
Sbjct: 384 QVKVKKQNFDIHINNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGSIQLDLFEEKSPK 443

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +I +KDNG G++   +  +  S+ +         +G GLG+ I + I+    G
Sbjct: 444 GEDFVRVHIKVKDNGIGMSPTFLKKIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEG 503

Query: 455 QFLIRSKLREGVEVIAI 471
              ++S+L +G E   I
Sbjct: 504 TINVQSELDKGTEFHII 520


>gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 599

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 189/468 (40%), Gaps = 19/468 (4%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
             +   V   LP  VL+   +  +       P+   I   ++   +     +     +  
Sbjct: 51  AAARCVVLACLPALVLVPLTLSFFQGVAVALPLGVAIVAGLFLIAVVAALWLARLSSRQP 110

Query: 102 EVYVWR--IWLLVGQIAIGLCWTLLTLVEPG-----TWTPEYLTIYKSATLLIALSISAL 154
            +         +   +  G+ +TL                    +           +   
Sbjct: 111 AIRHSLDTSASIDLSLFPGMVFTLDAQARVETVGGRDARDFLPFLRNPLGRPFIDQVHVT 170

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMH-----------VLDISLAGMLATALSFFTYI 203
                  A         +      +               +     +   A        +
Sbjct: 171 DRIAFVRAFDALRQGEDIGRVKLRLARPTNAHSEGSNGENLHGEITSDEAADGTLMAVGL 230

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + +     ++    +     E +       +     +  N AKSRFLA++SHELRTP
Sbjct: 231 DMAVRRDERGGIAGIFVQMLDCREQQQMAQRLVKLDADLQTANEAKSRFLAAVSHELRTP 290

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS+++  +  G + +E ++EY+  I +SG HLL+++N +LD+ RIEAGRYEL  
Sbjct: 291 LNAILGFSDILMGDYFGRMEDERHREYVRLIRQSGGHLLSVVNTMLDMCRIEAGRYELLV 350

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              SL   + +C  ML L+AQEK +++  +I   +S + AD + +RQ+++NL+ NA+KFT
Sbjct: 351 EPFSLSQAIHDCENMLALQAQEKGVKLTSRIGRDVSELTADPRAVRQILINLVGNAIKFT 410

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V           IS+ D G GIA+  I  +   F Q          GVGLGL 
Sbjct: 411 EPGGVVTVDAARFGKD-LVISVSDTGIGIAQDRILLLGQPFVQVDSDYNRKFDGVGLGLS 469

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           + + ++A HGG FL+ S+  EG  V   LP         +   ES Q 
Sbjct: 470 LVKGLVALHGGTFLLTSREGEGTVVSITLPIDGSGIARVQSTGESRQI 517


>gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 616

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 20/355 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201
            L +    +AL  F +  +  +    ++  L T  I++  +L     G+++      FF 
Sbjct: 15  VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I   L KS +++     +   L  +     +         E+ N  KS  +A++SHELR
Sbjct: 75  LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+G S ++    +     +  +EY+  I+ S   L ++ ++I+DL +I++ R EL
Sbjct: 128 TPLNGIIGLSRILLEGEL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
               I    ++ +      L A++  I+        L + ++ D   + Q++ NL+SNAV
Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG ++++V          S++D G GI + E   V   F Q   + +   QG G+
Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           GL I++ I    GG   +RS++ +G      +         P +  +S +   +A
Sbjct: 304 GLAISKRIAKLMGGDLTLRSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352


>gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 463

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 167/349 (47%), Gaps = 28/349 (8%)

Query: 159 LPYAVFLSFFPVVVAL------STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           L   VF  F P VVA         +A      L  ++A       +           S +
Sbjct: 119 LGRVVFGPFVPEVVAALPERMDVVRAQGLGSPLAAAVAYFSQVLEALMAVGHRSWLASRI 178

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ S    + +L  E+  A+  S + R R  E +  +S FL ++SHELRTPL +I+ +SE
Sbjct: 179 QLESAGEIRREL--EVRDARMASLQARLR--EMDRLQSSFLGTVSHELRTPLASIIAYSE 234

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++     G LN E  +  +  I   G+ LL+LI  ILD+S++EAG+  L+ + + + ++V
Sbjct: 235 LLSEGITGMLNPEQLQ-CVQSITEMGRTLLDLITSILDISQLEAGKLRLAFAPVDMAEVV 293

Query: 333 RECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              +  +  +++ K +++   +       V AD+  + QV++NLL+NA+KFT   G V V
Sbjct: 294 VSAVSSVTPQSRRKGLKLEVVLPELRQPRVLADKGRLYQVLVNLLANALKFTPE-GHVRV 352

Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            +     + +         ++D G GI + ++  +  +F Q   +      GVGLGL I 
Sbjct: 353 RLSEVGPQEELGTLGYRFCVEDTGVGIRQDQLERIFQTFYQVDSSSTREFGGVGLGLSIV 412

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR---------VLNFIPEDN 485
           +  +  HGG+ L+ S+  +G    A+LP+           VL  +PE +
Sbjct: 413 KRFVEGHGGKVLVTSQPGQGSCFTAVLPSRPPQVGESGVHVLPPLPEPD 461


>gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
            indicum S5]
 gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum
            S5]
          Length = 1150

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 5/270 (1%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            F+ +   L         I+  +  + +  E+R R+E  N  KS+F+A+MSHELRTPLNAI
Sbjct: 880  FRDSSAALPSIFGATRDISRHKETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAI 939

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            +G+SE+++ E       + Y++    + ++G+ LL +IN+ILD++ +E+   +L   +  
Sbjct: 940  IGYSEMLQEEYRSDPQGQIYQDM-ERVQKAGRQLLQIINDILDMADLESQTAQLQAESFD 998

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            +    R+    +Q    +    +  + D ++ ++++D + +RQV+++LL+NA +FT   G
Sbjct: 999  ICSEARQVAQSVQAAIHKNGNTLDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFT-ENG 1057

Query: 388  RVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +V +TV      S     + ++D G GI       +   F  G  +      G GLGL I
Sbjct: 1058 QVALTVSAEQRHSEPWVLLRVRDTGIGIDPSIHEQIFEPFTLGDSSSTRLYGGSGLGLSI 1117

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++      GG   ++S+  +G E    LP 
Sbjct: 1118 SRRFCEMMGGAITLQSETGKGAEFTVALPL 1147


>gi|171057603|ref|YP_001789952.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775048|gb|ACB33187.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 822

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 30/354 (8%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
              ++   +            +A               +A  L    S  T +   +   
Sbjct: 165 ADGMAPLSVEIHELALQANRDIADQVALRNEAVRRQNGIAIGLTIFQSLLTLLFAVVVVR 224

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            V+ L  +         LE   +   E R  AE+ + AKS FLA+MSHELRTP N +LG 
Sbjct: 225 QVRALQQRR------THLEALAANLQEARIEAEQASRAKSAFLANMSHELRTPFNGLLGM 278

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             +++   +    +    +Y+     SG+HLL ++N++LD+S++E+GR E++    SLI 
Sbjct: 279 LSLLQRSPL----DARQADYLQTARESGEHLLAILNDVLDISKLESGRLEITPERTSLIR 334

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +   ++  +AQ K++     +   +   + AD K ++QV+ NL+ NA+KFT   G V
Sbjct: 335 VLGDVRSVMSPQAQAKHLRWSVTVADDVPVWIRADAKRLKQVLFNLVGNALKFT-ENGEV 393

Query: 390 HVTVGWTSGR------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            V V                            ++ D G G+    +  +   F QG   I
Sbjct: 394 SVHVDCVPAPATASAAPGAAEAVPAATAWLRFAVTDTGIGMDALTLARLFQRFSQGDETI 453

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
                G GLGL I++++    GG   +RS+   G     +LP  R+     ED 
Sbjct: 454 NRRFGGTGLGLEISRTLARRMGGDITVRSEAGRGSVFTVLLPFERIDAPPAEDT 507


>gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 464

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   TY+   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N KI S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 464

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   TY+   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N KI S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 464

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   TY+   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N KI S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|291539348|emb|CBL12459.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 867

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AK+ F+++MSHE+RTP+N+I+G +E++      P      +EY+ +I  SG+ LL
Sbjct: 261 EDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGRVLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            +IN++LD S++EAG+ +L +       +  +  I ++ R     +E+   ID  +   +
Sbjct: 317 TIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIPCKL 376

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             D   +RQVI+NL++NA+K+T  G     VHV    T     Y  + D G GI + +  
Sbjct: 377 KGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKEDQK 436

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  +F +  +      +G GLGL I+Q+++   GG   + S+  +G      +
Sbjct: 437 ILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|116622396|ref|YP_824552.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225558|gb|ABJ84267.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 610

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 178/412 (43%), Gaps = 31/412 (7%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
                A+    L   ++   + +       W    LV     G+                
Sbjct: 61  VCYATALVLLRLGHFRRASRAYL----AGTWIWATLVCSSYGGV--------RSPGALLY 108

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLA 194
                 +A LL + +    +   L  A+  +   +   L  Q + +     +I +  +L 
Sbjct: 109 VSMPASAAWLLGSTAAIRTAGGCLLSALVFTVLEMTHGLPLQRMATPLGTWNIVVQAVLI 168

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A+     +   + +    +   Q  +  L + ++       E R +AE  N AKS FLA
Sbjct: 169 NAIP----VGEIIGRLRETLQELQRHQQHLASLVDQRTQQVVEARDQAESANRAKSAFLA 224

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPL+ IL  S+++             +E I  I  SG+HLL LI+++LD+++I
Sbjct: 225 NMSHELRTPLSVILASSDLLNES----DPTPDQREDIARISHSGKHLLGLIDDVLDVAKI 280

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+ +L+ +A  LI  VR  + M+++RA+EK + +     P +   V  D   +RQ+++
Sbjct: 281 EAGKEDLAIAASDLISTVRTVVEMMRVRAEEKCLSLVYYQAPDVPRYVRVDAPKLRQILI 340

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG---RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGS 428
           NLL NA+KFT   G V + +   +G        S  I+D+G G+ +  +  +   F    
Sbjct: 341 NLLGNAIKFTRK-GTVKLQLSAKTGAEPGLARFSFDIEDSGVGMPQHHLGRIFEPF---E 396

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           ++    + G GLGL I Q  +   GG  +++S +  G      LP       
Sbjct: 397 VSNPGPQTGTGLGLTITQRFVELMGGTLVVKSDVGRGSRFEVELPLELAKES 448


>gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
 gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
          Length = 1035

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 8/265 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + +  +      RK AE  +  K+ FLA +SHE+RTPLNAI+GFSE++  E  GP
Sbjct: 769  LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG  ++   A+SL D + E I ++Q 
Sbjct: 829  IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I      +L  + AD + ++QV LNLLSNAV+FTA GG+V V+  +      
Sbjct: 889  QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + ++D G G+++ E+   L  F Q           A     +G GLGLP+ ++++  + 
Sbjct: 949  VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008

Query: 454  GQFLIRSKLREGVEVIAILPNTRVL 478
             QF I S   +G  V  +   TRVL
Sbjct: 1009 AQFAIDSNPGQGTVVEIVFSPTRVL 1033


>gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 781

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++         +
Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNAAD 455

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 456 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 512

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 570

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 627 GSTFRFTIP 635


>gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
 gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
          Length = 892

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 8/284 (2%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +  +  +    +     +    I     +    + ELEV     +  R+ A + +  KS 
Sbjct: 218 LAGSINTMAASLQRAQTELQENIEQATDDLKQTLDELEVQNIELNLARREALDASQTKSD 277

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ILGF+ ++     G   N+   EY+  I  S   LL++IN+ILD 
Sbjct: 278 FLANMSHEIRTPLNGILGFTRLLS----GTRLNKRQLEYLQTIESSSTSLLSIINDILDF 333

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+  L ++ +++ DI+ + I ML   A +K+IE+   +   +   +  D   ++Q
Sbjct: 334 SKIEAGKLVLDQAPVNVSDIIDDVITMLAPEAHKKHIELAALVYQDVPQEIMGDSLRLKQ 393

Query: 371 VILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++ NL++NA+KFT  G  +  V +    G       S++D G G+ + +   +  +F QG
Sbjct: 394 ILTNLINNAIKFTHTGSVIVRVMLEEQEGSDVTLKFSVQDTGIGMTDDQQKNLFKAFSQG 453

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +      G GLGL I++ ++ +  G+    S    G E    
Sbjct: 454 DESTSRRYGGTGLGLVISRYLVEHMQGELGFDSTAHVGSEFFFS 497


>gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 723

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 3/229 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLN 303
           N  K  F A++SHE RTPLN I    +++E   + + P  +    +Y   I ++G+ LL 
Sbjct: 460 NKLKMEFFANISHEFRTPLNLIFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLR 519

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L N ++D++++++G +EL     +++ +VR+    +    + K +E     +     +  
Sbjct: 520 LANNLIDITKMDSGSFELELENCNIVSLVRKVACSVAEHIEYKELEFEFDSEIEEKIIAC 579

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + +VILNLLSNAVKFT IG +V V + +T      IS+KD G GI++ +   +   
Sbjct: 580 DPFNIERVILNLLSNAVKFTDIGDKVSVNI-YTEEGKVLISVKDTGIGISQEKQELIFKR 638

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           FGQ   +   + +G G+GL I +SI+  H GQ  + S+   G E I  L
Sbjct: 639 FGQADKSFTRSNEGTGIGLSIVKSIVELHNGQISVESEEGVGSEFIIEL 687


>gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
 gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
          Length = 389

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +V +      +++AEE N  KS  +A+M+HE+RTPLNAI+GF+ ++        + 
Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  ++  S + L  +++E  +    +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ +    + S + ++ D   + Q++ +LL NA+KFT   G VH              
Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVHWGYQEKENGQIRFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +   +   F +      S  QG+GLGL + + I+    G   + S++ E
Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 374 GSTFWFTIP 382


>gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 525

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS++I        + 
Sbjct: 285 VTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDE 340

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y   +  +   LLNL N+ILDLS +EAG  ELS   + L DI  +   +  +++ 
Sbjct: 341 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELY-VKSV 399

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +          +  D + + Q+++NL++NA+KFT+  G +H      +       
Sbjct: 400 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSA-GEIHFGFQEKAD-MVQFY 457

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI    + T+   FG+         QG GLGL I + ++   GG+  +RSK  +
Sbjct: 458 VSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGK 513

Query: 465 GVEVIAILPNTR 476
           G      LP  R
Sbjct: 514 GTVFYFTLPVKR 525


>gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 534

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + I    ++  
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +    +     P+   ++ D+K + QVI N ++NA+KFT   G++ +             
Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTSEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   ++  V   F +      S  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518

Query: 464 EGVEVIAILPNTRV 477
            G       P   V
Sbjct: 519 TGSRFWFTHPYQSV 532


>gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 389

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +V +      +++AEE N  KS  +A+M+HE+RTPLNAI+GF+ ++        + 
Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  ++  S + L  +++E  +    +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ +    + S + ++ D   + Q++ +LL NA+KFT   G V               
Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +   +   F +      S  QG+GLGL + + I+    G   + S++ E
Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 374 GSTFWFTIP 382


>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1358

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 9/241 (3%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E R  AE  N AKS FLA+MSHE+RTPLNAI+G + ++        +  ++ +Y+  +  
Sbjct: 974  EARVAAESANRAKSEFLANMSHEIRTPLNAIVGLTHIMLN---YKTDPASHGKYLQTMKD 1030

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
            S   L+ LIN++LDL+RIEA R EL  +   L ++VREC+ + +++  EK +        
Sbjct: 1031 SADTLMQLINDVLDLARIEADRVELEMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGL 1090

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
            P  + V  D   ++Q+++NLLSNAVKFT   GR+ V V     R       I ++D G G
Sbjct: 1091 PHGTVVETDVLRLKQILMNLLSNAVKFTQT-GRIDVEVSAAPARSELLPVTIRVRDTGVG 1149

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            IA  +I  +   F Q   +I     G GLGL I++ +    GG+  + S++ +G      
Sbjct: 1150 IAADKIEHIFAQFTQEDASITRRFGGSGLGLAISRRLSEMLGGRLTVESEVGKGTVFSLS 1209

Query: 472  L 472
            L
Sbjct: 1210 L 1210



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 9/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            + A +  A++  DE R RAE   E + AK+ F +++SHE R     +      +E    
Sbjct: 309 QIAAGIANAQAYEDE-RSRAEALAELDRAKTAFFSNVSHEFR---TPLTLLLAPLEEVLA 364

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      +E +   +R+   LL L+N +LD SRIEAGR + +   ++L     E     
Sbjct: 365 DPATTPRDRERLDVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNLACYTAELASNF 424

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +       +     I P    V+AD +   +V+LNL+SNA K+T   G V +++   +  
Sbjct: 425 RSAMDRAGLAYKLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLE-GEVEISLS-EADG 482

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D GPGI E E   V T F +       + +G G+GL + + ++  HGG+  ++
Sbjct: 483 HAVLAVRDTGPGIPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLK 542

Query: 460 SKLREGVEVIAILPN 474
           S+   G      LP 
Sbjct: 543 SETGRGSTFFVRLPL 557


>gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1169

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A+S    +   +        + +    DL   +    +     R++A     A+S FLA
Sbjct: 375 GAVSEILSVGSDVTARLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLA 434

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NA+LG + ++E +       E   +    I+ SGQ LL +IN+ILD+S+I
Sbjct: 435 NMSHEIRTPMNAVLGLAYLLERQ---ENLPEEACDLARKIYHSGQSLLGIINDILDVSKI 491

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVIL 373
           E+G+  + ++   L  ++     ++   A+ K++ +           +  D   + Q+++
Sbjct: 492 ESGKILIEQTRFQLSQVLDNLATIMTTAARGKDLALAIVPPRDCDWPLLGDPLRLGQILI 551

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL +NA+KFT   G V V +              +++D G GI       +   F Q   
Sbjct: 552 NLTNNAIKFT-DSGVVEVRITPVESSASNLVMRFTVRDTGIGIDAETQARLFQPFMQADA 610

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           +      G GLGL I++ ++   GG+  + S    G      +P  R     P+
Sbjct: 611 STTRRFGGSGLGLMISRQLVELMGGRLGVESAPGVGSTFWFEVPLGRTEPDAPD 664


>gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
 gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
          Length = 873

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 9/319 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P  VAL ++++     + + +     +   ++  +           L      +  I + 
Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDITDR 354

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              +        ++++   AKS FLA+MSHE+RTP+NAI+G SE++        N    +
Sbjct: 355 RRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPR 410

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  +H+S  +L+ +IN+ILD S++EAG+  L E       +V  C  +   +A +KN+
Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKKNL 470

Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           ++   +  ++ + V  D+  + Q++LNL+ NAVKFT   G V + V  +       S+ D
Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESEHGFD-FSVSD 528

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E  +  ++  F Q   +     +G GLGL I++ +++ + G+  + S   +G  
Sbjct: 529 TGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKGSC 588

Query: 468 VIAI--LPNTRVLNFIPED 484
                 LP    L   P +
Sbjct: 589 FSFSLQLPKQSQLLAEPIE 607


>gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1150

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 17/275 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ELE  +      ++ AE  + AKS FLA+MSHE+RTP+NAILGF++++E         
Sbjct: 661 ITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQILER---DSTLG 717

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             +  ++  I R+  HLL+++N+ILD+SRIEAG+ E +    +L     +  +M   RA 
Sbjct: 718 PDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFEDLELMFIPRAV 777

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            K +E+  + + SL     AD   +RQ+++NLL NA KFT+  G V   +          
Sbjct: 778 SKGLELTFEKNGSLPRAGHADPGMLRQIMVNLLGNACKFTSQ-GEVTFRISAEKNSEACG 836

Query: 403 ---------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    + ++D+GPGI   E+  +   F QG       E G GLGL I++      G
Sbjct: 837 TGQGGFTLNVQVQDSGPGIDPEEMDRIFDPFHQG--GRDPGEGGTGLGLHISRKYARIMG 894

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           G   +     +G      +P  +    + +    S
Sbjct: 895 GDLSVSPHTEKGSLFCLQVPVQQATRPVEDGKPPS 929


>gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1122

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 9/282 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L               + I E E ++   +E  +     N AKS FLASMSH++RTPLNA
Sbjct: 451 LISEQDSSQRFITVTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNA 510

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G + +       P +++   E +  I  S Q LL LIN++LD+S+IE+G+ +L+E+  
Sbjct: 511 VIGLTNLAL---YSPEDSKKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEF 567

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            L + +   + + Q +   ++        + +   +  D   + QV+ N+L NAVKFT  
Sbjct: 568 ELGEWLSGVVTVTQSQTGVRSQHFDVNVWNITHELLCGDTVRLGQVLTNVLGNAVKFTPK 627

Query: 386 GGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G +++ +     +          + D G G++   +  +   F +   + K   QG GL
Sbjct: 628 DGEIYLDITEVPSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGL 687

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           G+ I + I+   GG   + S+  +G      L        +P
Sbjct: 688 GMAITKRIVDLMGGTIRVESEPEKGTTFTIGLSIRLSSRHVP 729


>gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
 gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri]
 gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
          Length = 927

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 123/258 (47%), Gaps = 10/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 376 ERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 432

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++   + I  +  SG HLL L+NEILD S+IE  + EL+ ++   +DI+         
Sbjct: 433 -KDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYLS 491

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
             + K ++       +   V   D+  +RQ+I NL+SNAVKFT   G + +    T    
Sbjct: 492 VCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE-GSITLNFSHTLTGK 550

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I IKD G GI E  +  +   + Q   +      G GLGL I + +     G  
Sbjct: 551 GKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYI 610

Query: 457 LIRSKLREGVEVIAILPN 474
            + S   +G     +LP 
Sbjct: 611 SVSSSEGKGSCFTLVLPL 628


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 1231

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 8/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E++V +        RAE  + AKS FLA+MSHE+RTP+N +LG +E++    +     
Sbjct: 658 VTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDT--- 714

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K +   I +SG  LL +IN+ILD S+IEAG+ +L        + V + + +L   A 
Sbjct: 715 -RQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 773

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           EK+IE+  +ID S+S  V  D    RQ++ N++ NAVKFT  G   V ++          
Sbjct: 774 EKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESI 833

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            S  ++D+G GI   ++ T+   F Q   +     +G GLGL I   ++    G+  + S
Sbjct: 834 FSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVS 893

Query: 461 KLREGVEVIAILP 473
           ++  G      +P
Sbjct: 894 EVGRGSAFEVDIP 906


>gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
 gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
          Length = 609

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 374 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 432 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +         IS+ D G GI +  +  +  
Sbjct: 491 MDGDKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  +  +
Sbjct: 550 RFYRVDKARSRQMGGTGLGLAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLPMAKDED 606


>gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1764

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/314 (31%), Positives = 150/314 (47%), Gaps = 20/314 (6%)

Query: 181  SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDE 237
            S    +I     +A  L    Y    L K   +         +L    +    AK  ++ 
Sbjct: 1220 SWQPDEIEFVQKIANQLGIALYQAELLLKEQHQRHVLSVRSQELTFNNQQLAKAKQEAET 1279

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +++AE+ N AKS FLA+MSHELRTPLNAILGFS++I  +   P       E +  I+RS
Sbjct: 1280 AQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDPSTPNY---QLEQLEIINRS 1336

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            G+HLL LIN++L +S+IEAGR  L    + L  ++     ML L+A++K +++      +
Sbjct: 1337 GEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGLKLIFDRGLT 1396

Query: 358  LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISI 405
                +  D   +RQV++NLLSNA+KFT   G V + +   +                 ++
Sbjct: 1397 PPHYIRTDPGKLRQVLMNLLSNAIKFT-TSGHVQLCLESNTLDTPEGAGVPPLLDVRFTV 1455

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G GIA  E+  +   F Q     +S  +G GLGL I++  +   GG     S   +G
Sbjct: 1456 SDTGSGIAPEELKLLFEPFAQTETGRQSQ-EGTGLGLAISRQFVQIMGGNLTAHSIHNQG 1514

Query: 466  VEVIAILPNTRVLN 479
              +   +    VL 
Sbjct: 1515 TTLTFNIVVETVLQ 1528


>gi|150007276|ref|YP_001302019.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935700|gb|ABR42397.1| two-component sensor histidine kinase, with response regulator
           receiver domain [Parabacteroides distasonis ATCC 8503]
          Length = 791

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    K L  E  + A   N AK+ FL+ MSH++RTP+NAI+G + +     +   + 
Sbjct: 261 IKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDIRTPINAIVGMTAIAR---LHMDDQ 317

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I  S + LLNLINE+LD+S++E+ +  L+E A  + +++    +M+Q   +
Sbjct: 318 MRIADCLKKITISSKLLLNLINEVLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFE 377

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
            K  +    +       +  D + ++Q +LN+L+NA+K+T   G++ +TV          
Sbjct: 378 AKKQKFQIHVTKIKHECLIGDVQRIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGY 437

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ DNG G+    +  V   F +         QG GLG+ I++ I     G  L+
Sbjct: 438 GQFEITVTDNGIGMKPEFLEKVFEPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILV 497

Query: 459 RSKLREGVEVIAIL 472
            S+  +G +     
Sbjct: 498 ESEYGKGSKFTMRF 511


>gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
 gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
          Length = 442

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F+A++SHELRTPL  I+G+ E +  +   P  +         + +  Q + 
Sbjct: 200 QHLEQMRKDFVANVSHELRTPLTVIMGYVETLSEQ---PELDPRIARAFTQMMQQSQRMN 256

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           N+IN++L LSR+E          I +  ++ +     Q+  +  +  I   ID +L  + 
Sbjct: 257 NIINDLLLLSRLENDEKPAEPKDIDIPKMLMQLFDDAQMYNKSYDHMIHLHIDSTL-HIL 315

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             E  +R  + NL++NA+K+T  GG + ++           S+ DNG GI +  I  +  
Sbjct: 316 GYEDYLRSALSNLITNAMKYTPKGGEISISWHEYDAG-VCFSVTDNGIGIEQRHIQRLTE 374

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F +          G GLGL I + ++  H     I S + +G       P +  +   
Sbjct: 375 RFYRVDTGRSRETGGTGLGLAIVKHVLYQHHATLDITSTVGKGSTFTVTFPKSASIPTQ 433


>gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 375

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +    + +K AE  N AK+ F+ +MSHELRTPLN+++GFS+++     GPLN    
Sbjct: 130 QKELEITLLKAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPLNT-KQ 188

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+ +I  SG++LL +IN +LD+SR+EAG   L    + +  ++ +  + L   A  K 
Sbjct: 189 SKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYENVDIASLIGDVRMSLLSPASVKR 248

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +  KIDPS+ +V AD   +RQ++ NL+SNA+KFT   G+V ++          + + D
Sbjct: 249 ITVELKIDPSVGNVRADITKLRQILYNLVSNAIKFTPAKGKVVISAC-KKEGVLEVKVSD 307

Query: 408 NGPGIAEGEIPTVLTSFGQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            G G+++     +   F Q   +                    I ++ +  HGG+  + S
Sbjct: 308 TGIGLSKDSHEKIFMPFTQADSSAARGYGGAGLGLY-------IVRNFVDLHGGKIWVDS 360

Query: 461 KLREGVEVIAILPNT 475
           ++ +G      LP  
Sbjct: 361 EVGKGSIFTFTLPAE 375


>gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 611

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 375 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 491

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 492 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 550

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 603


>gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 896

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 5/255 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++ +  +    + +  AE  N AKS FL+SMSHELRTPLN ILGFS++I  +T   L
Sbjct: 495 RDISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQLILSDTEHTL 554

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE  +  I  I  SG+HLL+LIN++L+LS I++GR + S+  + +  +  EC  +LQ  
Sbjct: 555 -NEKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEECQPLLQAL 613

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQ 401
           A+++NI I  + D + + V AD   ++QV + L+SNA+K+   GG V V+    T     
Sbjct: 614 AKQQNINIDFQ-DGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSASVQTHNNSL 672

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ++I D G GI++     V T+F +     +   +G G+GL +++ ++   GGQ    S 
Sbjct: 673 KLTITDTGKGISKDRQAQVFTAFERLGQ--ERHVEGAGIGLSVSKRLIEAMGGQIDFAST 730

Query: 462 LREGVEVIAILPNTR 476
             +G      LP ++
Sbjct: 731 EGQGTSFWIELPLSK 745


>gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1088

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 163/423 (38%), Gaps = 33/423 (7%)

Query: 67  TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126
           T   +  +W  + L      + +  +                  L+    +GL    L  
Sbjct: 329 TGLVLIALWVFVILFDRRVFVPVLVRSRRVFESEQ-----LSRTLIDTAPVGLG---LIA 380

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           ++ G        + ++A  ++  + +             +  P    L    I ++    
Sbjct: 381 IDTGEPLLRSPVMAETAKRVMVDAPT----LSAELVRRHAQQPQTGVLRYDRIFALRD-- 434

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
               G             Y      V   +   EK+ L  E           ++ AE  N
Sbjct: 435 ----GGQIDLAVSSARARYRGTDVLVTAFTDVTEKNQLAHE-------LRNAKQAAESAN 483

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS F+A+MSHE+RTPLNAILG  E++ L T+    +   +  +  I  S   LL +I+
Sbjct: 484 AAKSAFVAAMSHEIRTPLNAILGNLELLSLATL----DAEQRNRLSTIRTSSDGLLAIIS 539

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADE 365
           +ILD S+IEAG           +++    + M    A+ K + ++ + D  S  S+ +D 
Sbjct: 540 DILDFSKIEAGEMAFERIDFDCVELTGRALAMFAPGARAKGLRLYGQFDVDSALSMNSDP 599

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422
             + Q+I NLLSNAVKFT+ G   + +   +       +  S++D G G+   +   + +
Sbjct: 600 VRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDGATLLLMSVEDTGIGMTPEQQERLFS 659

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F QG  +I     G GLGL + + +    GG     S    G      LP        P
Sbjct: 660 AFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIHAESTPNVGSRFTVRLPTGSPTIARP 719

Query: 483 EDN 485
           +  
Sbjct: 720 DPA 722


>gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 614

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/283 (37%), Positives = 148/283 (52%), Gaps = 5/283 (1%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              T I   L     + L+  A +  +    EL           + A    +AKSRFLAS
Sbjct: 329 GEVTGIVRSLLDVTERNLAAVAARKVEQYALELRSKNEQLARALEGARAATVAKSRFLAS 388

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN I+GFSE++    +G L+ E   E +GDI  S +HLL LIN+ILDLS++E
Sbjct: 389 VSHELRTPLNGIIGFSELLYDAKLGHLSGEQI-EVMGDILTSARHLLQLINDILDLSKVE 447

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AGR E       L  +V E   +++  A+ KN+ +  ++   L +   D    RQV+ N 
Sbjct: 448 AGRMEFRPERSRLQPLVFEVRDVIRPLAERKNLVLATEVPEDLVA-HLDPGRFRQVLYNY 506

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNAVKFT  GG V V +         + ++D G GIA  EIP +   F Q   + K A+
Sbjct: 507 LSNAVKFTPAGGSVTVRIARERQLWFQLEVEDTGIGIAAEEIPRLFQEFSQLPNSRK-AD 565

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           QG GLGL + + I+   GG   +RS+L  G    A+LP    L
Sbjct: 566 QGTGLGLALTRHIVEAQGGSVTVRSELGRGSVFSALLPLDSAL 608


>gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1149

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 3/268 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 439 LEQTNEQLSERTEALDRKNDELVQAQEELQARADELQRSSKYKSEFLANMSHELRTPLNS 498

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L++E  K +   I+ +G  LLNLIN+ILD++++EAG+ E+   + 
Sbjct: 499 SLILAKLLAENAEGNLSDEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPEST 557

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            +  +V     M +  A  K +      +  +  +++ D + + Q++ NLLSNA+KFT  
Sbjct: 558 QVERLVEGLRGMFEPLAGHKGLAFEVTAEAQVPATLFTDRQRLEQILKNLLSNAIKFTER 617

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V + +G+  G G   +++D G GIA  +   +  +F Q          G GLGL I+
Sbjct: 618 -GKVSLNIGYQPGTGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 676

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +    GGQ  + S   +G     ILP
Sbjct: 677 RDLAHLLGGQINVDSSPGQGSVFSLILP 704


>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
 gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
          Length = 1111

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 315 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + D +   +    +         + +S  + +    +++    ELE    +  +
Sbjct: 375 KVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 431

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 490

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 550

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 551 LKVVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEHL 608

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 668 -----EEEIQTTQ 675


>gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 886

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 132/297 (44%), Gaps = 9/297 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              A              ++++ S   +    +             ++ AE  + AKS F
Sbjct: 446 AVAAFLVLAGKADVYDDQDIRLASLLMDAVWRMVARTRDAGTLRAAKEAAETASRAKSEF 505

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN I G ++++     G       KEY+     S + L  L+ +ILDLS
Sbjct: 506 LANMSHELRTPLNGIQGMAQLL----DGTDLTVEQKEYVDAALASCRRLTRLLGDILDLS 561

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           R+E+G+  L      L D++       +   +E  +     +   +   +W DE  MRQ+
Sbjct: 562 RVESGKLGLVSEPFRLADLIASVSAAFEPACREAGVAWITDVARDVPETLWGDEGRMRQI 621

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + NL  NAVKFT  G  R+ V  G            ++ D G GIAE ++  V  +F Q 
Sbjct: 622 LCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSVLFTVADTGVGIAEEDLERVFEAFHQV 681

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             +     QG GLGL I + ++   GG  ++ S++  G E +  LP  R    +PE 
Sbjct: 682 ERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESEVGRGTECVCALPLIRPAVPVPEP 738


>gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 570

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 7/239 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +KRAE    +   FLA ++HELRTPLN +LG +E++   ++        K+ +  ++ S
Sbjct: 201 AQKRAENSERSTRDFLAMINHELRTPLNGLLGAAELLADTSLSS----EQKKLLDTLNNS 256

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L  +IN++LD S+I AG  EL     +   I+     +++ +AQEK + +   ID +
Sbjct: 257 GELLRAIINDLLDYSKISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQLLLTLVIDNT 316

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   +  DE  ++Q+ +NL++NA+KFT   G + +   W   +     +KD G GI EG+
Sbjct: 317 VPNCLLGDEDRIKQIFVNLINNAIKFTNR-GSIILNTTWCEDK-LIFQVKDTGIGITEGQ 374

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F Q  I+ +   +G GLGL I + +     G+  + S   +G     ILP  
Sbjct: 375 QLKLFKPFSQVDISSQRIHEGTGLGLAICKQLCELMSGEIKLISIPEQGSTFTVILPLK 433


>gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 522

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS++I        + 
Sbjct: 282 VTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDE 337

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y   +  +   LLNL N+ILDLS +EAG  ELS   + L DI  +   +  +++ 
Sbjct: 338 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELY-VKSV 396

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +          +  D + + Q+++NL++NA+KFT+  G +H      +       
Sbjct: 397 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSA-GEIHFGFQEKAD-MVQFY 454

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI    + T+   FG+         QG GLGL I + ++   GG+  +RSK  +
Sbjct: 455 VSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGK 510

Query: 465 GVEVIAILPNTR 476
           G      LP  R
Sbjct: 511 GTVFYFTLPVKR 522


>gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 571

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF   + +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   +       + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLVLVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G+  + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 730

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++         +
Sbjct: 347 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNAAD 404

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 405 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 461

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 462 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 519

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 520 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 575

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 576 GSTFRFTIP 584


>gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 553

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/354 (32%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
           L LV       E L +  +      +   A     L   V +   P  +A  + A   + 
Sbjct: 175 LALVTLHGRGGEVLGLEHADAARAHVPEDAWLGQGLFDRVLVPDRPAFLAALSTAAHGLS 234

Query: 184 VLDISLAGMLA-TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +      L            +   +               I  +++        R  A
Sbjct: 235 ATESVCEVRLRCEGEGEAPDFVWMELRCVPAGEDRARAHWRDIHAVKIQLEEDHRARTEA 294

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  NLAKSRFLA+MSHELRTPLN ILGFSE++  +T   ++    ++Y   IH SGQHLL
Sbjct: 295 ERANLAKSRFLAAMSHELRTPLNTILGFSELLATDTEQRIDARRKEDYARIIHESGQHLL 354

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N+ILDLSR+EAG YELS   I +  +V  C+ M+ L A  +NI++   +   L    
Sbjct: 355 GVVNDILDLSRVEAGAYELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTTLLPARLPRPM 414

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD++ +RQ+ LNLLSNAVKF+  GG V V V         +S++D+G G++  E+  +  
Sbjct: 415 ADQRAVRQMTLNLLSNAVKFSEHGGLVEVNVSAQ-NGVVSLSVRDSGAGMSPAEVERLGE 473

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F Q   A + A +G GLGL + ++++  H G F + S +  G  V   LP  R
Sbjct: 474 PFFQAGDAERRA-RGSGLGLAVVRALVKLHDGAFEVTSSVGGGTTVTISLPVRR 526


>gi|218281107|ref|ZP_03487650.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989]
 gi|218217660|gb|EEC91198.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989]
          Length = 806

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 141/258 (54%), Gaps = 12/258 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + DDLI +  + K    +   +AE  + AK+ FL +MSH++RTP+N ILG++++++ +  
Sbjct: 403 DIDDLIQKERLQKEQLRKAYIQAENASKAKTNFLNNMSHDIRTPMNVILGYNQLMKKQ-- 460

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L +    +Y   I +SG  LL++IN++L+++RIE+G+  L ES+ S++D+V E   + 
Sbjct: 461 --LTDPVLVDYQKKIEQSGNLLLSIINDVLNMARIESGKSVLVESSESIVDMVEEVSNVF 518

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVG 394
              A+EK I    K+D     V  D   ++++++NL+ NA+K+T  GG V V        
Sbjct: 519 GAMAKEKEIVFDTKMDIKHKQVLCDCTKVKEILVNLIGNAIKYTPNGGHVTVDIKEFECS 578

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   I I D G G++E  IPT+  +F + + +      G GLG+PI + ++   GG
Sbjct: 579 KEGYGTYQIQIIDTGIGMSESFIPTLFDAFTREATSD---IIGTGLGMPIVKKLVDMMGG 635

Query: 455 QFLIRSKLREGVEVIAIL 472
              + S L +G      +
Sbjct: 636 TIDVESVLGKGSTFTITI 653


>gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 807

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 28/340 (8%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                    +S   +                +   G L   LS   +I   + ++     
Sbjct: 351 GARFFLFSLVSTMLLFSLDILTEFAKKGTAYLGQYGFLVFGLSQALFIADRMIQNF---- 406

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                           K    + ++ A  E   KS FL++MSHE+RTP+N ILG +++  
Sbjct: 407 --------------KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMTQMFG 452

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++     +  KEY+  I  SG++LL L+N+ILDL+++EAG++EL    I L   + + 
Sbjct: 453 QTSL----TDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDM 508

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + + + +   + + +    +  L   +  D++   Q+I NLL NA+KFT   G + + V 
Sbjct: 509 VQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTET-GTISLIVW 567

Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                       + IKD G GI   ++  +   F Q    +     G GLGL I + I+ 
Sbjct: 568 SDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVE 627

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              G+  + S+L +G      +P +     IP  +    Q
Sbjct: 628 EMSGKISVLSELGKGSVFHVEIPVSVSNEEIPTSDSLPNQ 667


>gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 812

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 28/340 (8%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                    +S   +                +   G L   LS   +I   + ++     
Sbjct: 356 GARFFLFSLVSTMLLFSLDILTEFAKKGTAYLGQYGFLVFGLSQALFIADRMIQNF---- 411

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                           K    + ++ A  E   KS FL++MSHE+RTP+N ILG +++  
Sbjct: 412 --------------KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMTQMFG 457

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             ++     +  KEY+  I  SG++LL L+N+ILDL+++EAG++EL    I L   + + 
Sbjct: 458 QTSL----TDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDM 513

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           + + + +   + + +    +  L   +  D++   Q+I NLL NA+KFT   G + + V 
Sbjct: 514 VQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTET-GTISLIVW 572

Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                       + IKD G GI   ++  +   F Q    +     G GLGL I + I+ 
Sbjct: 573 SDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVE 632

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              G+  + S+L +G      +P +     IP  +    Q
Sbjct: 633 EMSGKISVLSELGKGSVFHVEIPVSVSNEEIPTSDSLPNQ 672


>gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
 gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
          Length = 1142

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 176/349 (50%), Gaps = 18/349 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +K   L  A     LS  M+     +S +P   A+      +M  + I +  +   +   
Sbjct: 583 FKFTLLFSANMGIFLSLIMVASVKTMSLYPDQAAIIETFSWTMSAISIIVLMIATWSYLL 642

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASM 256
                  +    +     Q +   LI E    E       +++++A+  N+AKSR+L  +
Sbjct: 643 ------SMEGRQLAQDESQRQTQLLINEIKAHERTDLELQQSKEKADAANIAKSRYLERI 696

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+++G+++++E     PL     +E I  +  S +HL +LI  ++D+S+IEA
Sbjct: 697 SHELRTPLNSVMGYAQLLEGADDIPLP---RRESIKVMRSSSEHLTDLIEGLVDISKIEA 753

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           GR +L  + + ++ ++ + + M Q++AQ KNI +       L   V+AD K +RQV++NL
Sbjct: 754 GRLDLHRNKVDMLAMIEQLMYMFQIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINL 813

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +SNA+KFT   G V V + +   +  Y S+ D G GI + +I  +  +F + +  +    
Sbjct: 814 ISNAIKFTPE-GSVSVDLKYR-NQVAYFSVTDTGVGIEDEDISRISEAFVRIANPMH-QV 870

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482
            G GLGL I Q+++   GG   I S+  EG        LP++R +   P
Sbjct: 871 AGSGLGLAITQALVHRMGGDLSIESRFGEGSTFTVSLMLPSSREVTHQP 919


>gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
 gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++    +  F+A++SHELRTP+ +I GFSE +        + ET   ++  +H     
Sbjct: 235 ELKKLEQIRKDFVANVSHELRTPVTSIKGFSETLLDGAY--KDTETLLSFLEIMHTESNR 292

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LIN++LDLS++E   + ++    ++  +++    M+Q +  EK+I++  +I P   +
Sbjct: 293 LEMLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQP--VT 350

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV++NLL NAV +++    + + +         I ++D G GI   EI  +
Sbjct: 351 VLGDANRLIQVMMNLLINAVTYSSNYTEITIRLFR-KDNRAIIQVEDQGIGIESSEIGRL 409

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + ++  H G   + S +  G      LP  
Sbjct: 410 FERFYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLPLA 464


>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
 gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
          Length = 950

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 7/248 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 452 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGID----S 507

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +IV   +        +K + 
Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLT 567

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+  +  V   D   ++QVI NLL+NA+KFT   G + +   W +       ++D 
Sbjct: 568 LYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-WVAEGYLAFRVRDT 625

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+P +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 626 GVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685

Query: 469 IAILPNTR 476
           I  +P  +
Sbjct: 686 IVRIPIYK 693


>gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1228

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              + ++ +       K L+    +D  + + +  ++     ++ AE    AKS+FLA+MS
Sbjct: 795  GEYIWLNWVARPMADKGLTYAIARD--VTDRKKYEAELIAAKETAESATRAKSQFLANMS 852

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HE+RTPLN ILG  ++++   +         +Y+G+  ++ + L  L+++ILD+SRIEA 
Sbjct: 853  HEVRTPLNGILGMLQLMQQTRLDH----EQDDYVGNAIQASRRLTRLLSDILDISRIEAE 908

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            +  +     +L + +     +    A +  I+   ++ P + + +  D   ++QVI NL+
Sbjct: 909  KLIIMAEPFNLHESLNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLV 968

Query: 377  SNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
             NA+KFT+  G V V     S           SIKD G GI +  +  +   F Q   + 
Sbjct: 969  GNALKFTSS-GTVTVEATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSW 1027

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                QG GLGL I + ++A  GG   I S++  G  V   +
Sbjct: 1028 NRQYQGAGLGLSITKRLVALMGGTLCIESRVGVGTTVHLSI 1068


>gi|239625178|ref|ZP_04668209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519408|gb|EEQ59274.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1110

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 137/303 (45%), Gaps = 17/303 (5%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLAS 255
                        + I +  +EK   +   E    AK   +E        N AKS FL+ 
Sbjct: 675 LVAMEQNRPKTIIIAIRNISSEKQKELEHREEEKKAKQALEEAYAAVNRANQAKSEFLSR 734

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSH++RTP+NAILG + V E         +  K+ +  IH SG HLL LIN +LD+S+IE
Sbjct: 735 MSHDIRTPMNAILGMAAVAEHNL---DKGDKVKDCLSKIHTSGDHLLELINAVLDMSKIE 791

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILN 374
           +G   L+E+  SL  ++ E   ++Q     K   +   +      +V+ D   +++++LN
Sbjct: 792 SGSICLAENPFSLSCMMDEVAQIIQTDIGRKGQHLSVHMQGLGHDAVYGDMVRVKEILLN 851

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           LLSNAVK+T   G + V++                ++D+G G++      + T F +   
Sbjct: 852 LLSNAVKYTPENGTIQVSLEEKLSSQSGVGCFEFIVEDDGIGMSPEFQEKMFTPFERAED 911

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-----FIPED 484
              S  QG GLGLPI ++++    G   + S L +G   +  +    V         PE 
Sbjct: 912 ERVSQIQGTGLGLPITRNLVQMMNGTIGVESHLNKGTRFVVTIYLKLVDQDKTRRQEPEA 971

Query: 485 NHE 487
             E
Sbjct: 972 ISE 974


>gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1504

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 9/269 (3%)

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +  L  E +    L    R+ AE  N  K  FLA +SHELR+PLN ILG++++++     
Sbjct: 1110 QKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSPLNPILGWTKLLQTRKFN 1169

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +      E +  I R+ +    LI+++LD+++I  G+  +  + ++L+ ++   I  ++
Sbjct: 1170 EIKTA---EALATIERNAKLQCQLIDDLLDVAKILRGKLSIDTTPVNLVFVIESAIDTVR 1226

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              A  K+I +   + P++  V  D   ++Q++ NLLSNA+KFT  GGRV + +       
Sbjct: 1227 TAAVSKSILLHPVL-PNIGQVAGDSTRLQQIVWNLLSNAIKFTPNGGRVDIRIERVKD-S 1284

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +I + D G GI    +P +  SF Q  ++I     G+GLGL I ++++  HGG     S
Sbjct: 1285 AHIIVSDTGKGINPAFLPYIFESFRQEDVSITRKYGGLGLGLAIVRNLVEAHGGTISADS 1344

Query: 461  K-LREGVEVIAILPNTRVLNFIPEDNHES 488
                 G      LP    LN  PE N  +
Sbjct: 1345 PGEGLGATFTVRLPL---LNLAPESNQTN 1370


>gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 547

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLIES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + +    ++ +
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QVI N ++NA+KFT   G++ +     +       
Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  ++  V   F +      S  +G GLGL I +SI+ + GG     S++ 
Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIKHLGGTIGAESEIG 518

Query: 464 EGVEVIAILPNT 475
            G       P  
Sbjct: 519 VGSRFWFTHPLR 530


>gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
 gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
          Length = 617

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        +      ++  I      ++
Sbjct: 371 QKEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDQDIAPQ--FLTVIQNETNRMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK-------NIEIFQKID 355
            +IN++L LSR+++G  +L+   +++ ++    +    +  ++           I +   
Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKKYTIERYFT 488

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   
Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRK 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 548 DLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGSTFYISLP 605


>gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1287

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 27/287 (9%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               + ++    ++   E+ +LI  L+       E        N  K  FLA +SHELR+P
Sbjct: 855  QKGMMQAVCDQIAIAMERMELINSLQRQTEQLTEA-------NRMKDEFLAILSHELRSP 907

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LNAILG++++++   +           +  I R+ +    LI ++LD+SR+  G+  L+ 
Sbjct: 908  LNAILGWAQLLQARRLSEAQTAKG---LETIERNAKAQTQLIEDLLDISRMIRGKLRLNV 964

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLS-SVWADEKGMRQVILNLLSN 378
               +LI I+   I  + L AQ K I++   ++     +L   V  D + ++QVI NLL+N
Sbjct: 965  RTCNLIPIIETTIENINLAAQAKEIDLTFFLENPATENLPFQVSGDPERLQQVIWNLLTN 1024

Query: 379  AVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            A+KFT  GG+V V +    G             I + D G GI    +P V   F Q   
Sbjct: 1025 AIKFTPSGGKVEVRLTKNPGCEQNELITNSYAQIQVIDTGIGINSSFLPYVFDRFRQADS 1084

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR--EGVEVIAILPN 474
            +I  +  G+GLGL I + ++  HGG   + S     +G      LP 
Sbjct: 1085 SITRSHGGLGLGLAIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1130


>gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 854

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS  ++++SHELRTPL++I GF+E++       ++     +Y+  IH   + L N
Sbjct: 612 EMDRLKSELVSTVSHELRTPLSSIYGFTELMLNR---KMDLSKQDKYLKTIHSETERLSN 668

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N+ LD+ R+EA      +  ++L  ++ E             I      D     + A
Sbjct: 669 LVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDAC-PLIEA 727

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+ M+Q++ NLL+NAVK++  GG + V V          +++D G GI +  +  +   
Sbjct: 728 DEEKMKQLMNNLLNNAVKYSPFGGNIEV-VLEADHHHVQFAVRDEGIGIPKSALAKLFDK 786

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   +      G GLGL I + I+  H G+  + S  ++G      LP +
Sbjct: 787 FYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLPQS 838


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 20/377 (5%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS-------ALSNFMLPYAVF 164
           V          +   +       +    +  A  ++  + +       AL+   +     
Sbjct: 185 VLAALSASPLDVPFALLYLRTKEDGPVTFAGAVGVVWEAAASPWPLEQALAGETVRVDDV 244

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P+      + + S  ++ I+ +G  A        I+    ++  +  +   E    
Sbjct: 245 ARHLPLAGGPWGEPVTSALLMPIASSGQGAPLGVLVVGIS--PNRALDEGYTSFYELLAS 302

Query: 225 IAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETM 279
              L +  + + +E RKRAE   E + AK+ F +++SHE RTPL  +LG  E V+   T+
Sbjct: 303 QVSLALRNAQAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTL 362

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E     +  +HR+   LL L+N +LD SR+EAGR E S   + L     +     
Sbjct: 363 ----PEAAARELDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSF 418

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A+   + +     P  +  + D +   +++LNLLSNA KFT   G + V +   +G+
Sbjct: 419 RSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQ-GTITVRLRARTGQ 477

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++ I D G GI   ++P +   F +   A     +G G+GL + Q +    GG+  + 
Sbjct: 478 -AWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVE 536

Query: 460 SKLREGVEVIAILPNTR 476
           S   +G     +LP  R
Sbjct: 537 SVEGQGSCFTVVLPEGR 553



 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 16/334 (4%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            +L  + +  L  F L   +        V +   +  +     +      A       + 
Sbjct: 657 LILTDVMMPRLDGFGLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFS 716

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-EEENLAKSRFLASMSHELRT 262
              L       L     +          +S   E R  A +     +  FL+  SHEL+T
Sbjct: 717 ARELVARVCSTLELSRMRR---------ESSLQEARAEALKRAVQVRDEFLSIASHELKT 767

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL A     E+IE   +GP +  +    +    R  Q L  L+  +LD+S++  GR  L 
Sbjct: 768 PLMAFRLQLELIERS-LGPESRLSLASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLH 826

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              + L ++V E +  L+   +     +  +++  L   + D     +V++NLL NA+K+
Sbjct: 827 LEEVDLAEVVGETVEQLRGSLERAGCSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKY 885

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              G  + V   W       +++ D G GI+  +   +   F +          G+GLGL
Sbjct: 886 -GEGKPLRVRA-WKEQGISRLTVADQGMGISPEDQARIFERFERAVPG--RQYGGLGLGL 941

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            IA+ ++  HGG   + S   +G      +P  R
Sbjct: 942 WIARQVVEAHGGHIQVDSTPGQGTTFTVQIPQNR 975


>gi|237746436|ref|ZP_04576916.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377787|gb|EEO27878.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
          Length = 994

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 9/273 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +    V +L  + +  +  AE         E    AE  + AKS FL++MSH++RTP+
Sbjct: 434 KRIDGVPVLLLFTRQDVTETKAEQLRNHIALKEAFLAAENASRAKSDFLSNMSHDIRTPM 493

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G + +  +    P      ++ +G I  S +HLL LIN+ILD+SRIE+G+  L E 
Sbjct: 494 NAIMGMTAIAAMHVNEP---AYIQDCLGKITLSSRHLLKLINDILDMSRIESGKVFLVEE 550

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
              L  +V   + +   + + KN ++  +I   +   V  D   ++QV +N++ NAVKFT
Sbjct: 551 TFVLPTMVEALLAISLPQIRAKNQQLKVQIANIVHEEVVGDPLRLQQVCINIMGNAVKFT 610

Query: 384 AIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
             GG + + +                  D+G G+ +  +  +   F +   +     +G 
Sbjct: 611 PEGGHIALQITEKPCSLHGFGCYEFVFGDDGIGMEKEFLDRIFEPFVRADNSRVRKAEGT 670

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLG+ IA++I+    G   + S+  +G      
Sbjct: 671 GLGMSIARNIVRMMNGDIEVWSEPGKGSRFTVT 703


>gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 878

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 8/338 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            +  +A+ +     A+     P+   L    +    V  I +  +      +   +   L
Sbjct: 409 VVLSNAMRSDPRGGAMPPGHPPLSRYLGVPIMDRGEV--IGMFAIANAPQDYPDELVDWL 466

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            K      +       L  E +       + R +AE+ N AK+ FL+SMSHELRTPLNAI
Sbjct: 467 -KPFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAI 525

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LGF+++++        +E     +  I RSG+HLL LINE+LDL+RIE+GR ++S   + 
Sbjct: 526 LGFAQLLQNGR--QPLSERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPML 583

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
             D++ +   ++   A+++ I +              D   ++Q+++NLL NA+K+   G
Sbjct: 584 AHDVIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPG 643

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V V      G    I + D G GI    +  +   F +   A   + +G G+GL + +
Sbjct: 644 GAVEVRCEAV-GGRCRIGVVDTGIGIPASRLGELFQPFNRL-GAESGSIEGTGVGLALTR 701

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            ++    G+  + S+  EG      LP       + ++
Sbjct: 702 KLVDLMHGELGVHSREGEGSAFWFELPLCEQAPAVRDE 739


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 6/268 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               + + ++ +  A  + ++ E+E            AE  N AKS FLA MSHE+RTP+
Sbjct: 518 RVRHQGSDEVATLIAGFNTMLDEIERRDVELQAAIAAAEAANSAKSEFLARMSHEIRTPM 577

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LG +E+++   +        + ++  ++RSGQ LL +I++ILD S+IEAG+  L   
Sbjct: 578 NGVLGMTELLQRTRLTA----KQRSFVDTVYRSGQTLLTIIDDILDFSKIEAGKLMLERI 633

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             +L  ++ + + +L+  A  K + +  +    +   V  D   +RQ++ NL+ NA+KFT
Sbjct: 634 EFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRLRQILTNLVGNAIKFT 693

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G+V + V ++       +I D+G GIA      +   F Q   +      G GLGL 
Sbjct: 694 ER-GQVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQADSSTARKYGGTGLGLV 752

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ +    GG   + S    G      
Sbjct: 753 ISRQLAEMMGGTLTVESAPGRGSVFTVT 780


>gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
 gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
          Length = 534

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        + 
Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + I    ++  
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403
           +    +     P+   ++ D+K + QVI N ++NA+KFT   G++ +             
Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTCEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   ++  V   F +      S  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518

Query: 464 EGVEVIAILPNTRV 477
            G       P   V
Sbjct: 519 TGSRFWFTHPYQSV 532


>gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 646

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 170/402 (42%), Gaps = 35/402 (8%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           +  +LV     G       L E        L +    T+L  + +++ + F      FL+
Sbjct: 22  KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELASFTRFTEIQRDFLN 81

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224
               ++A S   I      ++ L                     K+     +   EK +L
Sbjct: 82  QIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSEELEQRQKALQASNAELEEKAEL 141

Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +A+     EV  +  +E R+  EE           KS FLA+MSHELRTPLN++L  +++
Sbjct: 142 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 201

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L+     E+   IH +G  LL LIN+ILDLS++EAG+ ++S + I+L+ +V 
Sbjct: 202 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 260

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV- 391
                 +    EK ++   ++ P L  ++  DE+ + QV+ NLLSNAVKFT  G    V 
Sbjct: 261 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVI 320

Query: 392 -------------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                              ++          S+ D G GIA  ++  +  +F Q      
Sbjct: 321 RPAGQDVPQAIREQLLEAGSLADPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 380

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I++ I    GG+   +S+   G      LP 
Sbjct: 381 RKYGGTGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPL 422


>gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 591

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI +   +   +   +  D   
Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+I+NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 921

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/322 (29%), Positives = 150/322 (46%), Gaps = 23/322 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             +     L  Q + +  +    L+ +    +      T    +   ++ + Q       
Sbjct: 483 GIWSASQTLRFQLLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRLRRLTAWQ------- 535

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   L+   ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 536 --------LAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 583

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           T + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE
Sbjct: 584 TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQE 643

Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           + +    +I      +   D   +RQ++LNLL+NA+KFT   G V + +      +G   
Sbjct: 644 RGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 702

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GG   + S+L
Sbjct: 703 EVADTGPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRL 762

Query: 463 REGVEVIAILPNTRVLNFIPED 484
            EG   +  LP   V +  P D
Sbjct: 763 GEGTRFVVDLPLHWVASNAPLD 784


>gi|295107410|emb|CBL04953.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 727

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 12/290 (4%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           + +   +   +  S    L+            +  K+   E    A+  + AKS+FL++M
Sbjct: 167 VGWAVVLMAGVAVSLAVYLALMYRNRK---REDRLKADLREALSLAQIASAAKSQFLSNM 223

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SH++RTP+NAI+G + + +         E     +  I  S +HLL+LIN++LD+ +IE+
Sbjct: 224 SHDIRTPMNAIVGLTTIAKAHL---HEPERMAACLDRIQSSSRHLLSLINDVLDMGKIES 280

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNL 375
           G+  L+E   S  D V   I + Q +A+ KN+ +   +      +V  D   + Q ++NL
Sbjct: 281 GKIVLNEDRFSFPDFVNGVIAIAQPQAKAKNLSLDITLGTIQQENVVGDAMRLNQALINL 340

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +SNAVK+T  GG + +++                ++D G G++   +  +   F +    
Sbjct: 341 VSNAVKYTPDGGSIRLSLSERPSHRPGCHDYRFVVQDTGLGMSPEFLERLFDPFEREESD 400

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                +G GLG+ I ++++   GG   + S   EG   I  +P   +   
Sbjct: 401 ATKRIEGTGLGMAITKNVVDMMGGSIEVESTPGEGSTFIMTVPLQPLDEE 450


>gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
 gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
          Length = 586

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578


>gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 702

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 138/266 (51%), Gaps = 12/266 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +      + RAE+    KS FLA+MSHE+RTP+NAILGFSE++  E      +E  K 
Sbjct: 194 RREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELLANEA----QSEQEKR 249

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +   I  SG+ LL +IN+ILDLS+IEAG  ++S     + D+VR    M   +A E+ +E
Sbjct: 250 HAETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFVQQMFARQAIERGLE 309

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402
           +  +I PS+  S+  D   +RQ+++N++ N++KFT  GG V V +    G          
Sbjct: 310 LHAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGG-VTVRLHGERGTEHRSRMLLT 368

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D G GI       V   F Q +   KS  +G GLGL I + +    GG+ L+ S+ 
Sbjct: 369 VEVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLSDLMGGRILLDSQP 428

Query: 463 REGVEVIAILPNTRVLNFIPEDNHES 488
             G       P+  +   +PE   + 
Sbjct: 429 GRGTLFRFEFPHVEISARLPESQTKE 454


>gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 800

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 9/274 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+  L  +LE    L     + AE  N AKS FL+ MSH++RTP+NAI+G   + +   
Sbjct: 261 TEQRVLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHDIRTPMNAIMGMLSIAKESW 320

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   +  ++ +  +  S + LL LIN+ILD+S+IE+G+  L + A       R    M
Sbjct: 321 DDP---DRVRDCLDKVENSARFLLALINDILDMSKIESGKAILKKKAFDFAAFTRNLAAM 377

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396
              +A++K +     +  SL+  +  DE  + Q+++NLL NA+KFT  GG V ++V    
Sbjct: 378 FYGQAEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNAIKFTEPGGSVLLSVQEDK 437

Query: 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G G+ +  +  +   F Q     +S + G GLGL IA+       
Sbjct: 438 RSNKASELVFTVTDTGIGMEKSFLKKIFEPFEQ-DSQQRSNQGGSGLGLSIAEKYARMMN 496

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           G   + S   +G   +A +         P    E
Sbjct: 497 GGIEVDSTPGKGSTFVARIWLENDEAQAPVSLEE 530


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 32/296 (10%)

Query: 209  KSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260
            ++    L  +AE         EV  +  +E R+  EE           KS FLA+MSHEL
Sbjct: 1303 QAANAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHEL 1362

Query: 261  RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
            RTPLN++L  ++++         +    E+   IH +G  LL LIN+ILDLS++EAG+ +
Sbjct: 1363 RTPLNSLLILAKLLADNA-DENLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMD 1421

Query: 321  LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
            +S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSNA
Sbjct: 1422 VSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNA 1481

Query: 380  VKFTAIGGRVHV---------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            VKFT   G V +                     ++          S+ D G GIA  ++ 
Sbjct: 1482 VKFT-DNGAVELVIRPAGADVPTAIREQLLEAGSLRDADADLIAFSVTDTGIGIAASKML 1540

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1541 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1596


>gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 722

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 134/295 (45%), Gaps = 20/295 (6%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           LF      L   A+     A      +   + R+ AE  + AKS FLA++SHELRTPLN 
Sbjct: 434 LFDIIAAPLPTPADALPRAALFARDATAMIQARQAAEAASQAKSDFLANVSHELRTPLNG 493

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G  +V+    + P      ++ + DI ++   LL+L+  +LDLSR+E+ +  L     
Sbjct: 494 IIGMGQVLAASNLDP----DQRQCLADIEQAAGALLHLVENLLDLSRLESEKLALDNQPF 549

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385
            L  I++     L   AQEK +E+   +   +  + + D   +RQ +LNL  NAVKFT  
Sbjct: 550 VLSSILQGVEATLAPLAQEKGLELSAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPA 609

Query: 386 GGRVHVTV---------GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            G V +           G      +   +++D G GIA+ +   +   F Q   +     
Sbjct: 610 -GSVTIEAYCAKPCVLAGPEGETVEVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRF 668

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G GLGL I++ ++   GG+  + S+  +G      L    V    PED   +  
Sbjct: 669 GGTGLGLAISRGLIEAMGGELAVDSEHGQGSVFRFCLRFGLV----PEDEATAPD 719


>gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
 gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
          Length = 630

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E + +AE  + AKS F+A++SH+ RTP+N ILG +++  +        
Sbjct: 234 ITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILGIAQIFNMHEHTKKQE 293

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I D+  S   LL L+ +ILD +R+E G+ EL  S  +L  +V   +     + Q
Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K I+I    D SL  S+ ++   +R++ LNL+ NAVKFT   G++ VTV     +    
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI + ++ T+   F + +    S  +G+GLGL I + ++ N GG+  + S 
Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 468

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG      +P        P +  E+
Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495


>gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
 gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
          Length = 753

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 130/242 (53%), Gaps = 10/242 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G ++++E   +    +E  + Y   I  S + LL LIN+ILDL
Sbjct: 380 FLANMSHEIRTPMNGVMGMAQLLEETEL----DEDQRLYTDTILSSARTLLALINDILDL 435

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+++AG+ EL+ +      +  + + +++++A+ K +E+  +    L   +  D+  ++Q
Sbjct: 436 SKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNRIKQ 495

Query: 371 VILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +++NL+ NAVKFT  G   + +              S+KD G GIAE ++  +   F Q 
Sbjct: 496 ILINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERFTQA 555

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             AI     G GLGL I++ ++    G+  + SK  +G     +LP  +V     E+  E
Sbjct: 556 DAAINRRYGGSGLGLSISRHLVNLMEGEISVASKPGQGSCFTVVLPLEQVEPA--EEVVE 613

Query: 488 ST 489
           S 
Sbjct: 614 SP 615


>gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13]
 gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 571

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVEDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF   + +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTI-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   +       + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G+  + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
 gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
          Length = 867

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS++++   +   ++
Sbjct: 622 IQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSS 679

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++++  I+ +   LL L+N+ILDLSRIE+G  +   S+ +L  I+++     Q  + 
Sbjct: 680 EEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDS-QRLSM 738

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + +E+           +  D   ++QV+ NL++NA KFT   G + +           I
Sbjct: 739 PQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTK-GYILLGYRVEDSGHTVI 797

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI++  +  +   F +         QG GLGL I Q+I+    G   + SKL 
Sbjct: 798 FVEDTGSGISDENLGHIFERFYKADN----FTQGAGLGLSICQTIVERLNGTITVTSKLG 853

Query: 464 EGVEVIAIL 472
           +G      +
Sbjct: 854 KGTHFEVRI 862


>gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 545

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 130/233 (55%), Gaps = 3/233 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLNAILG+++++++      +  + +E++  I  +G+HL +LI+ +
Sbjct: 308 KSMFLANMSHELRTPLNAILGYAQLLKMGV-ANNDPVSQQEFLDSILGAGRHLTSLISNV 366

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD S+IE G+ EL    + +  ++RE   ++    ++++ E+   I+P + ++  D   +
Sbjct: 367 LDFSKIEQGKIELYMGPVDVEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKL 426

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ+++NLLSNA KFT   G + + V   +      ++ D G GI+   +  +   F Q  
Sbjct: 427 RQILVNLLSNAAKFTEA-GTISLHVCAAAE-MIEFAVIDTGIGISAEHLGKLFQPFSQVD 484

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            ++     G GLGL +++ +    GG+  + S + +G     +LP   +L   
Sbjct: 485 SSVTRRVDGTGLGLALSRQLCHAMGGEISVESAVGQGSTFRVVLPAGDLLEQP 537


>gi|289664296|ref|ZP_06485877.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. vasculorum NCPPB702]
          Length = 1191

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +     +D +L  ++  D   ++Q++LNLL NA+KFT   G VH+ V        +G  
Sbjct: 905  QLAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTER-GSVHLRVAALPEHTQQGIR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSA 1049


>gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
 gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 7/244 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +E  ++A   +  KS FLA+MSHE+RTPLNAI+GFS ++       L  E   E+ 
Sbjct: 258 EERLNEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESD-LTKEDIIEFT 316

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I ++ + L+ LI++ILDLS+IE+   E S  ++SL  ++ E     ++  +E  +E+ 
Sbjct: 317 SLIEKNSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMRE-GVELL 375

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +     +V+ D   + QVI NL++NA+KFT+  G + +     +     I ++D G G
Sbjct: 376 LDLPGQEVTVYTDPARLSQVINNLVNNAIKFTSE-GNIRIGYRPAASGYVNIFVEDTGTG 434

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++   +  +   F +G     S +QG GLGL I ++I+    G+  + S   +G      
Sbjct: 435 MSREVLEHIFDRFYKGD----SFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTIT 490

Query: 472 LPNT 475
           LP  
Sbjct: 491 LPLK 494


>gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278]
 gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase
           with a response regulator receiver domain
           [Bradyrhizobium sp. ORS278]
          Length = 787

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 34/293 (11%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTP 263
           QAE +  +A ++  +S  +E ++  E                   KS FLA MSHE+RTP
Sbjct: 355 QAELEQKLAYVQAIRSDLEEQKRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTP 414

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ ++G  +++     G   N+  K Y      S   LL +IN+ILD S++EAG+ +   
Sbjct: 415 LSGMVGMVDLLR----GTSLNDEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSEC 470

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               +  +V   +  +  +A+ + +++     P L   +  D   +RQV+LNL+ NA+KF
Sbjct: 471 IDFDVPSLVESAVSFMGEKARRRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKF 530

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + V               I + D+G G+++     +   F Q   +I     G 
Sbjct: 531 TEQ-GAIEVHASHRELDDGAVDLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGS 589

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----------LPNTRVLNFI 481
           GLGL I + + A  GG   + S+   G                LP   V+  +
Sbjct: 590 GLGLAICKQLCAIMGGSIGVESEPGRGSRFWFEARCQRGEALALPAETVIEAV 642


>gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 785

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDLS+IEAG  E     ++L ++ R    + + R Q
Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQ 517

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D   + QVI N L+NA KFT   G +         +     
Sbjct: 518 E-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VDNQCIRFY 574

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA  ++  +   F +      S  QG GLGL I + I+   GG+    S++ +
Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGATSEVGK 630

Query: 465 GVEVIAILP-NTRVLNFIPEDNHESTQYKCY 494
           G      +P   R  + I       T+Y  +
Sbjct: 631 GSTFFFTIPYKERSDDRIAFSEVSETKYISH 661


>gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 17/300 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +S   ++S   E   L   L+   +     ++ AE+ + AK+ FLA+MSHE+RTPLN 
Sbjct: 158 LLQSLADLVSVAIENAYLYDALKTRAAELAIQKEAAEQASRAKTEFLANMSHEIRTPLNG 217

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G  ++I+   +    +E  KEY+     S + L +L++ ILDLS IE+G++ L E+  
Sbjct: 218 IFGMIQLIDNSNL----DEYQKEYLVAAKHSCKRLTSLLSHILDLSSIESGKFSLRENTF 273

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           SL DI      +  + +  K +     +D  L   V  DE  + Q++ NL  NA+KFT  
Sbjct: 274 SLSDIKESVRELFAIESARKKLLFQFNLDLRLPSRVIGDEARVLQILFNLAGNAIKFT-E 332

Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G V +                 +I+D+G GI +     +   F Q   A K   QG GL
Sbjct: 333 SGSVRIDACELPRHDPDACRVLFTIEDSGIGIPDQLQKEIFDPFVQAEGAYKRRFQGAGL 392

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT------RVLNFIPEDNHESTQYKCY 494
           GL I + ++   GG   + S   EG      LP        +  +  P  + +  Q K +
Sbjct: 393 GLAIVRKLVRLLGGTLAVDSVEGEGTTFYLSLPFRLPPSAGQSADAAPASDRDFPQTKGH 452


>gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 927

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 18/281 (6%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I + +  +    +   +A+  N AKS FLA+MSHELRTPLN ILG +++IE      
Sbjct: 376 ERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 432

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++   + I  +  SG HLL L+NEILD S+IE  + EL+ ++   +DI+         
Sbjct: 433 -KDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYLS 491

Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
             + K ++       +   V   D+  +RQ+I NL+SNAVKFT   G + +    T    
Sbjct: 492 VCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE-GSITLNFSHTLTGK 550

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   I IKD G GI E  +  +   + Q   +      G GLGL I + +     G  
Sbjct: 551 GKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYI 610

Query: 457 LIRSKLREGVEVIAILPNTRVLNF--------IPEDNHEST 489
            + S   +G     +LP     +         +P +  +ST
Sbjct: 611 SVSSSEGKGSCFTLVLPLDITKSKQLKDNDALLPSEQSKST 651


>gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1182

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 150/331 (45%), Gaps = 23/331 (6%)

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            S L    +        +    AL  Q + +  +    L+ +    +      T    +  
Sbjct: 730  SGLYTLEVQGRTVDGIWSASQALRFQVLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRL 789

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
             ++   Q               L+   ++ AE+ +LAK+RFLA++ HE+RTP+  +LG S
Sbjct: 790  RRLTGWQ---------------LAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMS 834

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            E++   ++      T + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +
Sbjct: 835  ELLLKTSLDI----TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQL 890

Query: 332  VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            V E   ++   AQE+ +    +I      +   D   +RQ++LNLL+NA+KFT   G V 
Sbjct: 891  VAEVKALMAPLAQERGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVG 949

Query: 391  VTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSI 448
            + +      +G    + D GPGI   +   +   F QG  A   S   G GLGL I Q +
Sbjct: 950  LKLTTLGSYQGLRFEVADTGPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQEL 1009

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                GG   + S+L  G   +  LP   V +
Sbjct: 1010 AMAMGGHIEVISRLGAGTRFVVDLPLRWVAS 1040


>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
 gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
          Length = 1128

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + D +   +    +         + +S  + +    +++    ELE    +  +
Sbjct: 392 KVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 449 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 568 LKVVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEHL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 685 -----EEEIQTTQ 692


>gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 661

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 126/256 (49%), Gaps = 7/256 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  + A+      ++ AE     KS FL +MSHELRTPL AILG+SE++E   +   + 
Sbjct: 251 ISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMEDHAVTSES- 309

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +  I R+GQHLL LI +IL+ SRIE+G+ E+S       + ++      +  A 
Sbjct: 310 ---LEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFESFRELAD 366

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +     +   +   +  D   +RQ++  L++NAVKFT   G + V V   +     +
Sbjct: 367 DKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDA-GEIGVAV-RVADGNLEL 424

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D G GI    + ++   F Q   +      G GLGL I Q +    GG   +RS+  
Sbjct: 425 NVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDISVRSQAG 484

Query: 464 EGVEVIAILPNTRVLN 479
            G +    LP  R  +
Sbjct: 485 AGSQFTVRLPIERTAS 500


>gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 630

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K      ++RAEE +  KS FLA+MSHE+RTPLNAI+GFS ++        +     EYI
Sbjct: 392 KKELILAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETA----DTPESHEYI 447

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  +   LL LIN+ILDLSRIEAG  +   + + +   +R+       R    N+E  
Sbjct: 448 RIIEDNNCLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPA-NVECI 506

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +       V+ ++  + QV+ N LSNA+K+T   G + V             ++D G G
Sbjct: 507 AEFGMKKCHVYTEKNRLGQVLGNYLSNAIKYTTE-GSITVGYYPPKDGNMRFYVRDTGCG 565

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+  +   +   F +        +QG GLGL I Q I         + S++ +G E    
Sbjct: 566 ISPEKQKAIFQRFVKLDN----FKQGTGLGLSICQMIAEKMHATVGVSSEIGKGSEFWIE 621

Query: 472 LP 473
           +P
Sbjct: 622 IP 623


>gi|315181686|gb|ADT88599.1| sensor histidine kinase LuxQ [Vibrio furnissii NCTC 11218]
          Length = 858

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 7/282 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +     +   +  +  A+  S   RK AEE    ++ FLA MSHELRTPLN ILG S++
Sbjct: 446 RIESIITQGQDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQL 505

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++         +   E +  +  SG+HLL ++N+ILD S+IE G++ + ++   L+D+V 
Sbjct: 506 LKRTV----TEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVS 561

Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
               + +   +EK + +    +      V  D+  + Q++ NLL+N+VKFT  G   + +
Sbjct: 562 AIERIYRPLCREKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQL 621

Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +  T       I++ D G GI E ++  +   F Q          G GLGL I  S++ 
Sbjct: 622 HLIETEAGAKLEITVLDTGVGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIE 681

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             GG   ++S    G      LP   V        H   + +
Sbjct: 682 MLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNEGKSR 723


>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 919

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 157/390 (40%), Gaps = 47/390 (12%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            + TL     WT        S  ++ A     L + ++   +   FF +  +     ++S
Sbjct: 47  AVATLEAALDWTVPNPPAILSMIIVFAAFSGGLWSGIVTALISCVFFALYFS-KDGVLLS 105

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
               ++    + A        +     +    +     E +    E   +       R+ 
Sbjct: 106 YDEDNLLRVIVYAVTTPAMAVMASIAKRRADAMGEASLENER---EHSASLRALLMQRQA 162

Query: 242 AEE-----------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            EE            + AKS FLAS+SHE+RTP+N I+G + +     +     +  +EY
Sbjct: 163 VEEELQQAKEAAEAASRAKSEFLASVSHEIRTPMNGIIGMTSLALQTEL----TQEQREY 218

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  S   LL++IN++LD S+IEAG+ E+        +I+ + +  L LRA EK +E+
Sbjct: 219 LEMVKISADALLSIINDVLDFSKIEAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLEL 278

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG----------------------- 386
              + P +   +  D   +RQV++NL+SNAVKFT  G                       
Sbjct: 279 AYDVGPDVPEALVGDPLRLRQVLVNLVSNAVKFTDAGEVVVRAEVDSRAPLTPEEEASAD 338

Query: 387 --GRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
             G   +  G   G      +S+ D G GIA  +   V  +F Q   +      G GLGL
Sbjct: 339 SQGTPSLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLGL 398

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I   ++   GG+  I S+  +G      L
Sbjct: 399 TICARLVEMMGGKIWIESEAGKGSTFHFTL 428


>gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1001

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                    ++  L   +E      E   A++    + +RAEE + AKS FLA+MSHE+R
Sbjct: 430 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 489

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNAI+G +E+   E +     E  +  +     S + LL ++N++LDLSR+E+GR  L
Sbjct: 490 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 545

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380
                S   + R  + ++   A  K ++    I      +V  D   +RQV+LNL+ NA+
Sbjct: 546 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 605

Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           KFT  GG V +TV                     RG   ++ D G GI       +  SF
Sbjct: 606 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 664

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q   +      G GLGL I++ ++   GG+  +RS+  +G E    +P  
Sbjct: 665 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 715


>gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 676

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 14/323 (4%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             V  +  P  V  + +   +  V+   +   L         +T  +        +    
Sbjct: 219 QRVIATGLPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQAEARR 278

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L AE           R+ AE  +  K  FLA++SHELRTPLNA+LG+++++    M 
Sbjct: 279 ALLLEAESR--------AREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 327

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P +   ++  +  I RS +  ++LI+++LD+S I +G+  L    + L D++      ++
Sbjct: 328 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 387

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A++K I +  +  P +  +  D   ++QV  NLL+NAVKFT  GG V +TV   +   
Sbjct: 388 PMARQKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGL 446

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI    +P V   F Q  ++      G+GLGL IA+ ++  H G     S
Sbjct: 447 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAAS 505

Query: 461 K-LREGVEVIAILPNTRVLNFIP 482
                G  +   LP     +  P
Sbjct: 506 SGADLGTTMAVTLPLHAPPSNEP 528


>gi|116625338|ref|YP_827494.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116228500|gb|ABJ87209.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 489

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 145/373 (38%), Gaps = 5/373 (1%)

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
           E+          +I       +  L            I  +  L             +  
Sbjct: 105 EIREAFQQGAGSEIRQSATIGVSFLYVAVPVAGGASAIRIAFPLSEINRQIGQIRGKILV 164

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           +  ++F P V+ ++  A      L   +A     A   F         S    L      
Sbjct: 165 STSVAFLPAVLIVAILARFISRRLAAIMAHAGELARGNFRARLPQTDSSEFGQLEQT--L 222

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           ++    L+   S         E+    +  F+ ++SHELRTPL +I G++E +    +  
Sbjct: 223 NETAENLQQTVSQLQHEHSELEKLERIRKDFVINVSHELRTPLASIQGYTETLIDGALT- 281

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +    ++G I  + + L  L  ++L LSR+E  R +      S   ++ +   ++  
Sbjct: 282 -DPDHNMRFLGIIRHNAERLARLTEDLLTLSRVEQKRQKFEFDLHSANALIHDAFELVSP 340

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A++  IE+ ++  P  + V  D + + Q++ NLL NA+K+T   G++ +      G   
Sbjct: 341 IARKNYIELVEERAPEDAVVCCDSEAVSQILSNLLDNAIKYTPADGKITMGATPV-GSMV 399

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GI E ++P +   F +   A      G GLGL I + ++A H G   + S 
Sbjct: 400 EFFVRDTGAGIPEEDLPRLFERFYRVDKARSRELGGTGLGLSIVKHMVAAHSGATRVESV 459

Query: 462 LREGVEVIAILPN 474
           + +G      LP 
Sbjct: 460 VHQGSTFYFTLPV 472


>gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 975

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 10/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +      ++ AE  N AKSRFL++MSHE+RTP+N ILG  +V+     G   +
Sbjct: 556 ISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGMVDVLR----GTELS 611

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++  +  +G+ L+ L+ +IL+LS+IE+G  EL+E+A   +++  + + +L  +AQ
Sbjct: 612 GRQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLELAGQVVALLSPQAQ 671

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399
            K + +  +           D   +RQ+++NL+ NA+KFTA  G V + +       S  
Sbjct: 672 AKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAA-GEVALKLSLLPARLSRE 730

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G GI   +   +   F Q   +   A  G GLGL I   ++    G+  + 
Sbjct: 731 ELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAICALLVDGMNGRLWLE 790

Query: 460 SKLREGVEVIAILPN 474
           S+   G      LP 
Sbjct: 791 SEPGAGSVFYCALPR 805


>gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
 gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
          Length = 611

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 375 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 491

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 492 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 550

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 603


>gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 903

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
             +  ++     +    +  Q +    I   + A+    E ++ A + + AK  FL+ MS
Sbjct: 484 PLWISVSTTPIVNENGRVERQIDLITDITHRKQAEKELIEAKEHALQLSEAKEMFLSVMS 543

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLN ++G + ++      P   +     +  +  S ++LLN+IN+ILDL+++E G
Sbjct: 544 HEIRTPLNTVIGVAHLLLDNDPLPGQMDD----LNMLKFSAENLLNIINDILDLTKMETG 599

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
             +L     ++  + R+ +  L +    K   +    D  +   +  D+  + QV++NLL
Sbjct: 600 HLQLETIPFNIQSLTRDIVSSLHINVSSKGNILELDFDDRIPKFIKGDKIRLYQVLMNLL 659

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NA+KFT  G  + +         Q I    +KD+G GI + ++  +   F Q +     
Sbjct: 660 GNAIKFTDQGNILLIIRLLEENDEQVILYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSR 719

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
              G GLGL I Q ++   G +  ++S +  G      +   + ++ +PE
Sbjct: 720 HYGGTGLGLTITQKMLQLLGAEISVQSSVGVGTSFSFSICFEKAVDVVPE 769


>gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
 gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
          Length = 1238

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/434 (21%), Positives = 171/434 (39%), Gaps = 38/434 (8%)

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            MW L T A+             S I           +L   + I   + +L  +    +
Sbjct: 156 VMWLLTTPAMVYLL---------SIISDFSRIKVYSVMLADVLMIS--FGILAFLAFNKY 204

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               + +Y  A +  +  + ++                 V+L    + ++ +        
Sbjct: 205 L--SILLYLVAWVFFSYVVYSMWTMFHASIAEARHDSSRVSLEVLRLFAVGLWFTFPGIW 262

Query: 193 LATALSFFTYITYHLFK-------------SNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   L      T                  S +       E+  LIA   V +    +  
Sbjct: 263 IIVKLGLVDVHTEEWMWCACDFLGKVMFSSSLLHGNFLTIEQRRLIAMRIVEEGNRIQVI 322

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  ++    K RF++SMSHELRTPLN I+G S+ + + + G +N++  K  I  I  SG 
Sbjct: 323 QELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKT-ITTIKTSGA 381

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LLNLIN+ILD + +  G+  +    ++L  +V + I + Q  A+   +++   +  ++ 
Sbjct: 382 RLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR-GVKLVNDLRENVP 440

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  D   + QV  NL+ N+ KFT   G + +           +++ D G GI E +   
Sbjct: 441 FVLGDTGRIIQVFHNLIGNSCKFTH-NGFISIAAS-VKDDEVEVAVSDTGIGIPEDKFDQ 498

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------- 472
           +  +F Q  +++     G GLGL + + ++  HGG+  ++SK  +G      L       
Sbjct: 499 IFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTLKIHSSAE 558

Query: 473 -PNTRVLNFIPEDN 485
            PN       P + 
Sbjct: 559 HPNEGQPQGTPTEA 572


>gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
 gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
          Length = 617

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           + +E +  KS F++++SHE RTPL +I    E+++  ++G + NET +E +  I    + 
Sbjct: 382 KLKEIDQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTI-NETQQELLKVIKEDSER 440

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI ++LDLSR+E+G+  L     ++  I+   +  L+  ++ +N++I  K   S   
Sbjct: 441 LNVLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRNVKIEIKNVGSSLF 500

Query: 361 VWADEKGMRQVILNLLSNAVKF--TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           V AD   +  V+ NL++NA+K+      G + +   +   +   +S++DNG GI E  I 
Sbjct: 501 VLADINKIILVLTNLITNAIKYKSEEREGHIIIEA-FKKEKNIVVSVEDNGRGIPEEYIE 559

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F Q  ++ +   +G GLGL I + I+ NHGG+  + S L +G      L
Sbjct: 560 KIFNKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDSILGKGSTFYFSL 613


>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
 gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
          Length = 1287

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 9/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           DL  +L+  + L+D  R++A + + AKS FLA+MSHE+RTP+NA+LG  ++     + P 
Sbjct: 512 DLTEQLKREQELAD-AREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPPR 570

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y+    ++ + LL L+N+ILD S+IEAGR EL     SL  ++ +   +L  +
Sbjct: 571 P----RDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQ 626

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR- 399
            Q+K+IE+  ++ PS+   +  D   +RQ++LN+L+NA+KFT  G  +  +         
Sbjct: 627 VQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGT 686

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I I+D+G G+   +   +   F Q   +I     G GLGL I + ++    G+  +
Sbjct: 687 CHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRV 746

Query: 459 RSKLREGVEVIA 470
            S    G     
Sbjct: 747 TSSPGVGSTFTI 758


>gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 714

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 8/236 (3%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R R EE   +  K   ++++SHELRTPL++ILGF E++          E    Y+  +H 
Sbjct: 474 RDRTEEQKMDHVKDELISTVSHELRTPLSSILGFMELLR---YRQPTPEKTTRYVEIVHE 530

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
             + L NL+N+ LD+ R+E G+ + +    SL  ++ E I      A+     I    D 
Sbjct: 531 EAKRLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETH--TIHAVTDD 588

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               ++ADE  ++QVI+NLLSNA+K++     + V +  T+ +   +S+ D G GI    
Sbjct: 589 DPILIFADEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQ-AILSVTDYGIGIPPTA 647

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              + T F +   +      G GLGL I + I+ +HGG   + S+L +G     +L
Sbjct: 648 FDKLFTKFYRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVESELNQGSTFTIVL 703


>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
 gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
          Length = 1128

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 153/378 (40%), Gaps = 6/378 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G+ W ++  V           +       +  +I  +       + F++   + +  +
Sbjct: 330 LKGIDWAIVVEVPESVAFARVNQLETLFIFAMLTAILLVVMASHYLSNFITAPLLKLTWA 389

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  +            +         + +S  + +    +++    ELE    L 
Sbjct: 390 AEKVSAGDLDADMTNTQRKDEIGRLAVSFERMQRSIREKILLIKQQN---EELESNLKLI 446

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+ +E +K  +  I 
Sbjct: 447 QKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITSE-HKYQLDIII 505

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++  SA+ L    R  + +       K I I  ++ 
Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLAGSTRLVLELSSHLLGTKPIRIINQVP 565

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI   
Sbjct: 566 NEPVWVSADPQRLEQVLYNLVGNAIKYTSE-GKIVISANVVDDN-IRVQVVDTGQGIPAD 623

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 624 QLEHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIELMNGSLYVSSQPMVGTTFSFTLPIA 683

Query: 476 RVLNFIPEDNHESTQYKC 493
            +      + +E+  +K 
Sbjct: 684 SLEQIEVANQYEAPHFKA 701


>gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
          Length = 799

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 5/244 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  K  F++++SHELRTPL ++     +I    +     E  ++       +   L+
Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRAALGLIAGGAL-QRRPEKVQQMFDVAIGNCDRLV 618

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N+ILD  R+ +G+ +L    +   D+++  + +    AQ+ NI +  + +P    +W
Sbjct: 619 RLVNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEP--MDLW 676

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + Q + NL+SNA+KF+  G  V V           I ++D+G GI   +I  +  
Sbjct: 677 VDADRILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFE 736

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +   A  G GLGL I + I+  HGGQ  + S++ +G          R +  +P
Sbjct: 737 RFQQVDASDSRAMGGTGLGLAICRRIVRQHGGQIWVESEVGKGSSFFFT--VARNVAVLP 794

Query: 483 EDNH 486
             + 
Sbjct: 795 TAST 798


>gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 932

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 9/249 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                +   D   +  ++   AKS FLA MSHE+RTPLNAI+G +++ +        ++ 
Sbjct: 397 RTRQQRKALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQR----AAEDKD 452

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  I  + Q LL++IN+ILD S+IEAG+ ++  +  +L  +V + I +   RA+EK
Sbjct: 453 QQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEEK 512

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQY 402
           +IE+ Q I   +  ++  D   ++Q++ NL+SNA+KFT   G + V+V  T         
Sbjct: 513 HIELIQHISRDVPLNLIGDPLRIQQILSNLVSNALKFT-EDGLISVSVRCTHNVEDIQLE 571

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             +KD G G+   +   +   F QG  +I     G GLGL I + ++   GG+  + S+L
Sbjct: 572 FEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVESQL 631

Query: 463 REGVEVIAI 471
            +G      
Sbjct: 632 GKGASFHFT 640


>gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1159

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 164/402 (40%), Gaps = 24/402 (5%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           ++       +G+    +  ++    A  L      L E    T   L I     +L  + 
Sbjct: 547 RRFEFGQSLVGQAARTKRSIVARTPADYLKIASS-LGEATPVTLIVLPILFEDQVLGVVE 605

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHL 207
           +++ + F   +   L+     + ++   I++    D  L     +     +    +    
Sbjct: 606 LASFTPFTQVHLDLLNQLTETIGVNVNTIIANSRTDALLEESQRLAGELQARSEELQSRQ 665

Query: 208 FKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
               +     + +   L  +    EV  +  ++ R+  EE        +  KS FLA+MS
Sbjct: 666 EDLQLSNAELEEKATLLARQNHDIEVKNAEIEQARQELEERARQLALASKYKSEFLANMS 725

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN++L  + ++       L      EY   IH +G  LL LIN+ILDLS++EAG
Sbjct: 726 HELRTPLNSLLILARLLAQNPTRNLT-AKQVEYAHVIHTAGSDLLQLINDILDLSKVEAG 784

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + ++    + L D+  +          EK +     + P + + +  D+  + QV+ NLL
Sbjct: 785 KMDIHLERVVLRDLAEDLKSTFSPITVEKGLRFTVDLAPGIPADLLTDQHRLAQVLRNLL 844

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           SNAVKFT   G V + +  T G             + D G GIAE  +  +  +F QG  
Sbjct: 845 SNAVKFTER-GSVELAIVATLGGDLSPATPSVTFKVTDTGVGIAEENLERIFGAFQQGDG 903

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                  G GLGL I + + A  GG+   RS+   G      
Sbjct: 904 TTSRRYGGTGLGLSICREVAALLGGEIEARSEFGRGSTFSLR 945


>gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 589

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E  KE    I+     +  
Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+R+E+G   L    I++ + + + I      A+EKNI +   I  +      
Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISLTEEEFML 477

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M QV  NL+ NA++ T+ GG V ++V         I IKD+G GI E ++P +   
Sbjct: 478 DEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   A      G GLGL I ++I+  H G   + S++ +G      +P  R
Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTKR 589


>gi|255528504|ref|ZP_05395290.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255507808|gb|EET84262.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 392

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 20/356 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLAT 195
           ++    A L+I L +  + N  L    + +F  ++ A+    I   +          +  
Sbjct: 3   ISFTNFALLIIGLYLLNVPNSKLHPQTYNAFLVMIFAILLSIINYYNFAKSFIQKSEILN 62

Query: 196 ALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSD--------ETRKR---- 241
                     HL +   +  +   QA  + L       K+  +        E +KR    
Sbjct: 63  KAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKAELEAIQSNIKYEEKKRLLNK 122

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYKEYIGDIHRS 297
           A E    ++ F A++SHELRTPLN I    +++    +   +   N     +Y+  I ++
Sbjct: 123 AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTIKQN 182

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL LIN ++D+++++AG +E++ S   ++ I  +  + +    + KNI +    +  
Sbjct: 183 SYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDTEVE 242

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   + +++LNLLSNAVKFT   G ++V + + S     ISIKD G GI +   
Sbjct: 243 EKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNI-YDSTDKVIISIKDTGIGIDKSMQ 301

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F Q   +I    +G G+GL + +S++  H GQ  + S+L EG E I  LP
Sbjct: 302 KLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 357


>gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 842

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 5/261 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E   A+  + E R  AEE    KS F+A+MSHELRTPL +I+GF+E+     +    N
Sbjct: 584 VSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GGLRSRGN 640

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +   DIH +G  +L L+N++LD++++E+    +      L  ++R  +  L+ + Q
Sbjct: 641 PAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRSLIRPVVRELEPQQQ 700

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I++  ++D +     AD    +QV+ N+L+NA+KF+ IGGR+ V           I+
Sbjct: 701 QKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDEQGDICIA 760

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D GPGI   E+  +   F Q S        G GLGL I + I+    G     ++   
Sbjct: 761 VSDQGPGIPPQELDKIFQPFVQSSKTRN-GSGGTGLGLAICRKIIDAMDGTIAASNRSEG 819

Query: 465 GVEVIAILP-NTRVLNFIPED 484
           G      LP  T      P +
Sbjct: 820 GSLFRITLPCRTGASETRPAE 840


>gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 466

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 132/324 (40%), Gaps = 11/324 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           +  LS      A    F  ++  L    ++   V   ++AG     ++  T     +  S
Sbjct: 152 VVTLSPLGGLDASMADFRVLLTGLGALGLVVAGVGSWAVAGSALRPVARLTETARAIASS 211

Query: 211 NVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                  QA  +D+L         + D      E     + RF+A  SHELR PL AILG
Sbjct: 212 RDLSRRVQATGRDELAMLASTFNQMLD----SIETAYRLQQRFVADASHELRAPLTAILG 267

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       L  E     + +     + L  L+ ++L L+R +AG   L      + 
Sbjct: 268 NLDLLRRRPG--LPPEEQARALEEARSEAERLSRLVADLLSLARADAG-VPLVIKPFDVD 324

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +V E     +  A+ + + +          V  D   ++Q++L LL NA+K+T  GGR+
Sbjct: 325 AVVLEAFQEARRLARGQELVLD---PLEPVHVPGDRDRIKQLLLILLDNAIKYTPAGGRI 381

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +      G  +++ D G GI   ++P V   F +   A      G GLGLPIA+ I+
Sbjct: 382 TLGLRGAGDGGAILTVADTGVGIPPADLPHVFERFYRADPARSRDPGGTGLGLPIARWIV 441

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             H G   I S    G  V   LP
Sbjct: 442 EQHQGHITIDSAPGRGTTVTVRLP 465


>gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 554

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. musacearum NCPPB4381]
          Length = 1132

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +     +D +L  ++  D   ++Q++LNLL NA+KFT   G VH+ V        +G  
Sbjct: 905  QLAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTER-GSVHLRVAALPEHTQQGIR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSA 1049


>gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1936

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 171/386 (44%), Gaps = 19/386 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L ++   +
Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +      A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKSQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++     G L +   +E+  
Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    ++L D+V       +  A+E+++    
Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDLVENLNRTFRQLAEERHLAFVI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYIS 404
             ++P L   V  D K ++QV+ NLLSNA KFT   G V + +G           +   +S
Sbjct: 1351 DVEPGLPRAVRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLRIGSAEGSPLRAGSQWLALS 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIAE +   +  +F Q          G GLGL I++ I    GG+ ++ S++  
Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGS 1469

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP    +  +     E+++
Sbjct: 1470 GSTFTLFLPFEPPVQAVTTRGAETSE 1495


>gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1023

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +V +      ++ AE  + AK+ FLA MSHE+RTPLN ++G   ++E  ++G  
Sbjct: 485 HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTSLGA- 543

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  SGQ+LL L+N+ILDLSRIE+G+  L    +SL  +  E I + +  
Sbjct: 544 ---EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPVSLKKLTSEVINLFRPM 600

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A+EK + I   I  S+   + +D   +RQ++ NLL N++KFT   G+V + V        
Sbjct: 601 AEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK-GKVLLKVEAEKFPNN 659

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD G GIAE ++  +  +F Q   +      G GLGL I++ +     G+ +
Sbjct: 660 KFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEII 719

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++S++ +G E    +   ++   IP    E
Sbjct: 720 VKSQVNQGSEFTLSILVEKLEYEIPAGIQE 749


>gi|134299752|ref|YP_001113248.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052452|gb|ABO50423.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 493

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 136/314 (43%), Gaps = 8/314 (2%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKD 222
           +   + V      ++   +    L+  L+  L     +   + + +      +  + E  
Sbjct: 177 ALQSMSVYSLLFGLVLATLFSWLLSRSLSRPLLKMKDVANAMSRGDYSRSINIKSKDEIG 236

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   L       +E   +    +  +  F+A +SHELRTPL  I G +E +    +   
Sbjct: 237 MLADSLNTLSHDLEEKINQLRRIDDTRRDFVAGVSHELRTPLTIIQGNAEALLDGVI--E 294

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +  ++++ +I+     L  L NE+LD+ +IE G+  L +  ++  +I    +  +Q  
Sbjct: 295 DKDKQRDFLINIYEESLRLKRLSNELLDMRKIETGQVNLYKEKVNASEIFFNVVSRMQHL 354

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+++ I +   +      ++ D   + QV++NL+ NA++F+     + +           
Sbjct: 355 AKQRGIILNLSVPEQPVILYLDTDRLGQVLINLIDNALRFSRSEVTIELK---DFPDKIK 411

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + I DNGPGI E E   V   F +   +   +  G GLGL I + ++  HGG   + S+ 
Sbjct: 412 VQISDNGPGIPEAERNLVWDKFYKVDKSRSRSAGGTGLGLSIVKQLIELHGGTVCLTSRE 471

Query: 463 REGVEVIAILPNTR 476
            EG   I  +P  +
Sbjct: 472 GEGTTFIFTIPKEQ 485


>gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1815

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 168/416 (40%), Gaps = 35/416 (8%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  IG     +  + V  +  G       L E        L +     +L  + ++
Sbjct: 1173 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1232

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210
            +   F      FL+    ++A S   I      +  L                   +  +
Sbjct: 1233 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1292

Query: 211  NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
                 +   EK +L+A+     EV  +  +E R+  EE           KS FLA+MSHE
Sbjct: 1293 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1352

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++       L+     E+   IH +G  LL LIN+ILDLS++EAG+ 
Sbjct: 1353 LRTPLNSLLILAKLLADNAESNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1411

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            ++S + I+L+ +V       +    EK ++   ++ P L  ++  DE+ + QV+ NLLSN
Sbjct: 1412 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1471

Query: 379  AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418
            AVKFT  G    V                    ++          S+ D G GIA  ++ 
Sbjct: 1472 AVKFTDSGAVELVIRPAGADVPNSIREHLLEAGSLHDADADLIAFSVTDTGIGIASSKML 1531

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1532 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1587


>gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
 gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
          Length = 466

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L + + L   P+ +A+    +     + I+    +   LS    +  HL   +       
Sbjct: 157 LIFDMGLILAPLALAMILITVWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EK + I   ++P +  V  D+  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELQFIEKKLRISTNLNPEII-VMIDDDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELHIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKGKGTTVIIKL 457


>gi|169333792|ref|ZP_02860985.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259357|gb|EDS73323.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM
           17244]
          Length = 541

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 9/264 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +  +       + AE  +  KS FL+ MSHE+RTP+N I+G +++     M   N E   
Sbjct: 143 QKKQRKLSIELQVAETASQEKSNFLSRMSHEIRTPMNGIIGMTDIA---CMNYDNPEKSL 199

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  I  S ++LL+LIN+ILD+SRIE G+ EL +    L        IM   RA + ++
Sbjct: 200 DCLNKIKLSSEYLLSLINDILDMSRIENGKIELYKQTFDLCGFCERLYIMFSQRAHDASL 259

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYIS 404
           +     + +   +  DE  + QV++N+LSNA+KFT   GR+ V V             I+
Sbjct: 260 DFNITSNITRPYLIGDELRLNQVVVNILSNALKFTRTNGRIDVDVNQKIIDDEICLLTIT 319

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+G G+++  +  +   F Q          G GLGL I+ +++    G+  + S+  +
Sbjct: 320 VEDSGIGMSKEFLAKIFEPFEQEVNTTSHQFAGTGLGLAISHNLIKLMNGKINVSSEQGK 379

Query: 465 GVEV--IAILPNTRVLNFIPEDNH 486
           G +      LP T   +++ + + 
Sbjct: 380 GSKFEISVELPITDKADYMNDQDS 403


>gi|149374896|ref|ZP_01892669.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149360785|gb|EDM49236.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 647

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 16/357 (4%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L  +L++           V  S   +V+ +   +     + +     +           
Sbjct: 171 ILWTSLAVGFSLLLFTLLIVNHSLNSIVLPIHGLSRRVAKLTNREYEEVEVGLAG----A 226

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  + +    + +      +L A  +   + S++ R RAE  N AKS FLA+MSHELRTP
Sbjct: 227 TREIRELEESLNALSRHLRNLKASRDETLASSEKARGRAEMANRAKSEFLATMSHELRTP 286

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG  E++  E +    +   K+Y+    +S + LL +IN+ILD S I+ G  EL  
Sbjct: 287 LNGVLGMIELVTDEAL----SARQKDYLQTARQSTEDLLTVINDILDYSHIDRGTLELDN 342

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLSNAV 380
               L +++  C    +  A+++ + +  K          V  D   +RQ++  L+ NA+
Sbjct: 343 REFDLKELITNCAASYRHVAEQQGLALSTKFIGDWPDRLLVLGDAPRLRQILAGLIDNAI 402

Query: 381 KFTAIGGRVHVTVGW--TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G + V  G+         +  ++ D+G GI    I  +  SF Q       +  
Sbjct: 403 KFTGD-GFIKVQAGFFSLEENCLVLNCTVSDSGCGIPVERIHDIFNSFEQLDTGDSRSYG 461

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           G G+GL + Q ++   GG   + + + +G +    LP          +  E    K 
Sbjct: 462 GTGMGLSLVQRLVELMGGHVKVETDIGKGSQFRFELPFELATRVDHVEASEQGPIKT 518


>gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 594

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 140/271 (51%), Gaps = 12/271 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++ V IL+     + + + + V + +++E  K+ E     KS F+ ++SHELRTP++ + 
Sbjct: 331 RTYVAILTLLYTGEHVRSVVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        ++E  +E+   I+     +  L+N++LDL+R+EAG   +    + +
Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNHMDNQKMPI 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386
             ++ + I    + A+E  +E+  +++        D+  M QV++NL+ NA++ T     
Sbjct: 444 APLLEKVIANFDVLAKENFVELGLELETPNLEYSYDQDRMEQVLINLIMNAIRHTGKEGY 503

Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443
            G+V +            I++ DNG GIAE +IP +   F +   A K  +  G G+GL 
Sbjct: 504 AGKVILKQTIDKTRNNLVITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I ++I+  H G+  + S L EG + I  LP 
Sbjct: 564 IVKNIVEAHNGKISVESVLGEGSDFIITLPL 594


>gi|91978328|ref|YP_570987.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91684784|gb|ABE41086.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 1122

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 10/358 (2%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            L             +  +  +++  +  L+       ++L   P   A        +  
Sbjct: 553 VLPRRVHALINSQVGHYLSVFMVSAGLVGLT----LMMIYLQTSPATEAQQIVLWDILWK 608

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L  +L  ++      F         +  +           I       +     ++ AE 
Sbjct: 609 LFFALTIIVGVVTWLFVLARQSRQAAEAETRRQTTLLMQEIDAHRQTDAELQRAKEVAES 668

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            NLAKSR++  +SHELR+PLNAI G+++++E ++  P      ++ I  + RS  HL  L
Sbjct: 669 ANLAKSRYVVGLSHELRSPLNAISGYAQLLEQDSSLP---PRPRDQIRLMRRSADHLSGL 725

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           I+ +LD+S+IEAGR  LS   + L + + + + M +L+A  K++E   K    L   V+A
Sbjct: 726 IDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVGMFRLQAAAKDVEFVFKRPQYLPPVVYA 785

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQV++NLLSNA+KFT   G VH  V + +     + ++D GPGI   ++  +   
Sbjct: 786 DEKRLRQVLINLLSNAIKFT-QSGSVHFIVHYRNP-VAELEVRDTGPGIHADDLERIFAP 843

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F +G++ +     G GLGL I++ +    GG   + S L +G      L  + V N  
Sbjct: 844 FERGALGVSQPHTGTGLGLTISKLLAGVMGGDLSVTSALGQGSTFRVKLLLSEVTNPT 901


>gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 522

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 4/235 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ A+ GF+E +    +   +  T + +   IHR  + +  
Sbjct: 267 RLEQIRRDFVANVSHELRTPVAAVQGFAETLLEGVIR-EDPATAEHFAQVIHREAERMAR 325

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++LDL+R+E+    L      L D   +     + R +   + +  +  P    VWA
Sbjct: 326 LVQDLLDLARLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWA 385

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTV 420
           D   + QV  NLL NA ++T +GG V V VG      Q +    ++D G GI    +P +
Sbjct: 386 DRHRLDQVWTNLLENARQYTPVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRI 445

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +       A  G GLGL I + I+  HGG     S+L  G  +   +P  
Sbjct: 446 FERFYRVDPGRSRAAGGTGLGLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIPLA 500


>gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 621

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + +   +++    +    ++ +IN+
Sbjct: 379 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPKIAPKFLEVTQQETSRMIRMIND 436

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-------RAQEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++L D V   +    +       ++ +K   I +++      
Sbjct: 437 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINRELGSQALW 496

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  +
Sbjct: 497 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLGKI 555

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S    G      LP   +   
Sbjct: 556 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLPYEPMTEE 615


>gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 637

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 12/243 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + + +AEE +  KS FLA+M+HE+RTPLNAI+GFS+V+  E     + ET +E+   
Sbjct: 402 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRQEFADI 457

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  + + L  LI ++LDLS+IE+    L      +  +++E   M+ LR  E  +E+   
Sbjct: 458 IQNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELY 516

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               L  +  D   + Q++ NLL+NA+K T   G +      ++   ++  ++D+G GI 
Sbjct: 517 DCEELV-METDRNRLTQILTNLLTNAIKHTQE-GSIRFGYKRSALSVEFF-VQDSGEGIP 573

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E +I T+ + F Q         +GVGLGL I Q ++   GG   + S++ EG      LP
Sbjct: 574 EDKIDTIFSRFVQLDNW----SKGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 629

Query: 474 NTR 476
             R
Sbjct: 630 LIR 632


>gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
 gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 9/252 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E + AK   +E        N AKS FL+ MSH++RTP+NAI+G +E+         + +
Sbjct: 702 EEEKKAKCALEEAYASVNRANQAKSDFLSRMSHDIRTPMNAIMGMAEIARN---STGDEK 758

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + +  I  SG+HLL LINE+LD+S+IE+G   LSE  I L   +RE   +++   ++
Sbjct: 759 RIADCLSKIDLSGRHLLGLINEVLDMSKIESGNMSLSEDVIVLDSFLREVSEIVRPDVEQ 818

Query: 346 KNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           K+      + +   S+V+ D   ++Q+++NLLSNAVK+T  GG + V++       +   
Sbjct: 819 KSQHYTVTRKEGKHSAVYGDTVRLKQILINLLSNAVKYTQEGGHISVSLEEKLSGERGVG 878

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D+G G+++  I  +   F +   +  S  QG GLG+ I  +++    G   + 
Sbjct: 879 CFEFVVEDDGIGMSKEFIDKLFLPFERAEDSRVSQIQGTGLGMAITLNLVQMMNGTIQVD 938

Query: 460 SKLREGVEVIAI 471
           S+L EG +    
Sbjct: 939 SRLDEGTKFTVT 950


>gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 526

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 9/347 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             +I   S       +               ++   +  + ++  L   +      +   
Sbjct: 168 MGTIILTSPMTFKQDIKSRMLSTTFVPFLILMLIAMIALMLMSNSLLKPIREIIKTSKSY 227

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + N         K++        + ++DE        N  +  F++++SH+ R+PL +I
Sbjct: 228 AQGNFNARVNVTAKNEFGELARYMEEMADE----LSRSNEYRKSFISNISHDFRSPLTSI 283

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E +     G +  E +++Y+G +    Q L  L   +L+L+  ++   +L +S   
Sbjct: 284 KGYIEAMLD---GTIPLEKHEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFD 340

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           + DI+   I   + R +++ I +        + V+AD   ++QVI NL+ NA+KFT  G 
Sbjct: 341 IRDIITPTINTFEKRCKDRGIFLDSVFLTDNTVVYADRTKIQQVIYNLVDNAIKFTPEGR 400

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           ++ V V        Y S+KD G GI +     V   F +   +    + G GLGL I + 
Sbjct: 401 QIRVQVT-EKDNKIYTSVKDEGVGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKE 459

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH-ESTQYKC 493
           I+  HG Q  + S+  EG E I  LP  + +    +  H E T++  
Sbjct: 460 IIKAHGEQITLTSEEGEGSEFIFSLPKEKDMQVPIKPVHVEHTEHHS 506


>gi|294054688|ref|YP_003548346.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614021|gb|ADE54176.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1071

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 11/273 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I   + A++   + +  AE  + AK  FLA MSHE+RTPLN ILGFS ++       L
Sbjct: 672 EDITLRKQAEADLIQAKDEAEAASRAKDEFLAVMSHEMRTPLNPILGFSAMLRES----L 727

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE    Y+  I  +    L LI++ILD  RI       S     L D+    +      
Sbjct: 728 PNEPEAGYLDTIVSAANRQLRLIDDILDYMRINNSSITASPEPFRLADLCETAVHDASSL 787

Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
                ++   ++  S   +V  D   +R+++ NLL NA K+T   G V + +       +
Sbjct: 788 TDNLALDFHNELPDSQDFTVVTDLIMLRRILDNLLGNACKYTNE-GSVDLYLRLAEYDSR 846

Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I ++D G GI E     +  +F Q   +     +G+GLGL I + ++   GG+  
Sbjct: 847 ISTFEIEVRDTGIGITEEMQRNLFEAFSQADSSYSRKHEGLGLGLAICKRLLDILGGEIS 906

Query: 458 IRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489
           + S   +G      +P   +     PE   +S 
Sbjct: 907 VESIRGKGSSFTLSIPLQIKEDTETPESPQDSA 939


>gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 725

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 167/431 (38%), Gaps = 27/431 (6%)

Query: 68  QNPIFPMWSLITLA---VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
             P     +        V A  +   ++      ++              +A  + + + 
Sbjct: 292 GMPFLAELAAPISTDERVLAVLILHSRRANTFTEEVLAFIDALRERAGLPLARAMAYQVA 351

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
                             A L +   +   +                       ++   +
Sbjct: 352 YETSYHLGQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQPQRSSFYVGIDLVEHLL 411

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--------D 236
             +S    L+            +F+ N+++     E   L      +            D
Sbjct: 412 TRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQPYQELHVLSVPTRDSHHQLTGRLWVVSD 471

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            TR+R  E +  K  F+  +SHELRTPL +ILG++E++       L++E+ +E++  +  
Sbjct: 472 RTRER--ESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ--DLDSESQREFLLTVSN 527

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               L  ++ ++LD+SR+EAG  +L+  A+ L  ++ E    LQL  Q    ++   +  
Sbjct: 528 EADRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEEL--TLQLHTQLVQHKLLIDMRT 585

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIK 406
            L  V+AD   ++Q+I+NLLSNA+K++  G  + + V              G+   I+++
Sbjct: 586 PLPPVFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQ 645

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +   +   F +   +    + GVGLGL I + ++  HGG+  ++S +  G 
Sbjct: 646 DQGIGIEPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVGVGS 705

Query: 467 EVIAILPNTRV 477
                LP   V
Sbjct: 706 SFSFTLPIWTV 716


>gi|291537656|emb|CBL10768.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 437

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243
            +  +         + +Y L +  +  +   A+   L+ E EV + +    S   ++  +
Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIGKMADNIILVDETEVYEEMRPFISMIKKQHMD 212

Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             N    +  F A++SHEL+TPL AI G++E+I     G  +      +  +IH+S + L
Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LIN+I+ LS ++    +L    + L D+  +CI  +Q++A +  + +    + +   +
Sbjct: 270 QALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             ++  + +++ NL SNAV++   GG V +     + R   I +KD G GI + +   V 
Sbjct: 328 NGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   +   +  G GLGL I + I+A H  Q  + S++  G E+  + 
Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437


>gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 825

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ +L  +LE    +  +  + AE  N +KS FL+ MSH++RTP+NAI+G + +     
Sbjct: 284 TEQRELQRQLEERSVMLHDALQTAERANRSKSEFLSRMSHDIRTPMNAIIGMTAIAGTHI 343

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +  K+ +G I  S + LL LINE+LD+SRIE+G   ++E    L D+++  + +
Sbjct: 344 ---DDRDRVKDCLGKITLSSKLLLGLINEVLDMSRIESGNLAITEEEFCLNDMLQNLVTI 400

Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           LQ     K      +       +V  D + ++QV LN+LSNA+K+T  GG++   +    
Sbjct: 401 LQPSVMAKQHTFDIRAHHLRHENVIGDPQHIQQVFLNILSNAIKYTPAGGKIMFDIREKP 460

Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      + +DNG G+    I  + + F +   A   A QG GLG+ I+++I+   
Sbjct: 461 SNTAGYGLYEFTFEDNGYGMKPEFIEKLFSPFERADDADVLAVQGTGLGMAISRNIVKLI 520

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G   ++S  R+G      LP  
Sbjct: 521 NGDIKVKSTYRKGSTFTVELPLK 543


>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
 gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
          Length = 1223

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 9/242 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NAI+G S +     +        + YI  +  S   LL LI
Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+ ++ +    L +++     ++ LRA ++ +E+  ++D  + + +  D
Sbjct: 533 NDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGD 592

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421
              + Q+++NL +NAVKFT  G  ++ ++V    G       ++ D+G G+ + +   + 
Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLF 652

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           T F Q   +      G GLGL I++ +    GG   + ++L +G      +  TRV + I
Sbjct: 653 TKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSFTI-ATRVSHSI 711

Query: 482 PE 483
            +
Sbjct: 712 QQ 713


>gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 812

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E     + 
Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ +  E       +  P  +   AD   + QV+ N +SNA+KFT   G
Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHQ-G 722

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V     + +   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I+   GG   + S+L +G      LP 
Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 180/489 (36%), Gaps = 28/489 (5%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV------------ 59
           +G ++S     LG         + E     +     +  ++    L +            
Sbjct: 188 IGGVVSHPRLVLGDAAQLSTAAEAERRHSAILLCVSLFMVVYHLALFLFYRRDRSTLYFA 247

Query: 60  --ANIGTWFTQNPIFPMWSLITLAVYAANLSLGK-----KVMNSDIKIGEVYVWRI---- 108
               +            W L    ++     + +       +   + +  +         
Sbjct: 248 LYCLLWLINGTITYVSSWLLSFTEIHNMVWIVYRCDLISYYLTIPLMVLFLRSLFRDEMP 307

Query: 109 -WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
             +    +   L ++   L+                  L  + I   S + L  A     
Sbjct: 308 AAMPKLALLPALVFSGYVLLPESVGLHPLQGSSPQLYHLFTVLIIFWSAYGLLKAWQHKR 367

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
               + L+   +M+M  ++  L  +      FF      LF    + L+      +    
Sbjct: 368 SGAGLILAGFILMTMVGVNDMLFDIKVVNTGFFMPFGMLLF-IVFQALALAQRFSNAFTT 426

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E       E        +  K  FLA+ SHELRTPL  I+G +E +   + G L+ E  
Sbjct: 427 TERLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLS-ELA 485

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +  +  S + L +LIN+ILD +R+      L+  A+ +  +    + +L   A+ K 
Sbjct: 486 RHNLHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEAKQ 545

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +  +ID +L    ADE  ++Q+  NL+ NA+KF+   G + VT G        +S++D
Sbjct: 546 LTLVNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQ-GEIVVT-GQQVNGWLELSVRD 603

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    + T+   F Q       A QG GLGL I ++++  HGG   + S+L +G  
Sbjct: 604 QGIGIDADSLKTIFEPFEQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQGST 663

Query: 468 VIAILPNTR 476
               LP + 
Sbjct: 664 FCFTLPVSE 672


>gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
 gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
          Length = 857

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375
           G++ + +S   L ++V     + +    +K IE+  + +  S++ V +D+  + Q++ NL
Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSVTLVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
               G GLGL I  S++    GQ  + S+   G      LP   V +   P+ 
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715


>gi|257094787|ref|YP_003168428.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047311|gb|ACV36499.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 709

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 10/312 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++   V+VAL  +  +     ++  A        +   +          ++    E  D 
Sbjct: 155 VTVAMVLVALFLEFTVGRRARELGRAADRLANRDYAAILPAAGTDEIGDLVRSFGEMRDA 214

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +++    ++ R+ AE  N AKS FL+ M HELRTPLN +LG ++++    M  L  
Sbjct: 215 VRSYDIS---LNDAREAAEAANHAKSDFLSMMGHELRTPLNGMLGMAQLLL---MPNLTE 268

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y   I  SGQ LL L+N+ILDLS+IE+G+  +  +     D++RE + +    A 
Sbjct: 269 RERQDYARIILTSGQSLLTLLNDILDLSKIESGKLRIESAEFDPDDLIRETLALFSASAT 328

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQ 401
            K + +  +   S      +D + +RQ++  L+ NA+KFTA G  V   V V   +    
Sbjct: 329 NKQLVLAGQWRASCGQHYRSDPQRLRQMLSKLIGNAIKFTAHGKIVVEGVEVARDADSAV 388

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G GI   ++  +   F Q   +      G GLGL I +S+    GG   + S
Sbjct: 389 LEFSVSDTGIGIPAEKLDLLFRPFSQADSSSTRKYGGSGLGLSIVRSLTERMGGDAGVDS 448

Query: 461 KLREGVEVIAIL 472
               G      +
Sbjct: 449 VAGSGSRFWFRI 460


>gi|110834847|ref|YP_693706.1| two-component sensor histidine kinase protein [Alcanivorax
           borkumensis SK2]
 gi|110647958|emb|CAL17434.1| two-component sensor histidine kinase protein, putative
           [Alcanivorax borkumensis SK2]
          Length = 1144

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 11/362 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L+           +     LLI +++          A+     P+      + +   
Sbjct: 574 MGGLLPQTLINHMRSRMGHFLGLLIIVALIMSG----LLALIYYQIPIADPTVKELMADT 629

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241
                ++  +++  +++   + +       +    Q     + I   E       + ++ 
Sbjct: 630 LTKVFAILIIISGVVAWLFVLAHESRVVAQEESRRQTRMLMEEIKAHEKTDLALQQAKEL 689

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR+L  +SHELR+PLNA  G+++++E     P   E  ++ IG I RS +HL
Sbjct: 690 AESANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ---DPTIPENRRDAIGAIRRSTEHL 746

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
            +LI  +L++S+IEAGR EL  + + + +++ E + M QL+A EK I    +    +   
Sbjct: 747 SDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMFQLQAAEKGIGFEFRSKSQMPTW 806

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DEK +RQ+++NLLSNA+KFT   G+V +T  +   +     I D G GI E ++  +
Sbjct: 807 VTTDEKRLRQILINLLSNAIKFTRE-GQVTLTFRYR-NQVAEFVIADTGVGIDEEDLKRI 864

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +       +  G GLGL I Q +    GG   + S   +G E    +  +R+   
Sbjct: 865 FRPFERVRKPGTPSVHGTGLGLTITQLLADIMGGDIQVSSIPGQGSEFRLSVMLSRLSGP 924

Query: 481 IP 482
            P
Sbjct: 925 AP 926


>gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
 gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
          Length = 781

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ ++  +    + +  AE   LAKS FLA+ SHE+RTP+N I G  +++E E +     
Sbjct: 392 ISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLECEPL----T 447

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +     S Q L+ ++N+ILD S+IEAG+  L  +   +  ++      + L+ +
Sbjct: 448 QNGQNLLKQATYSTQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTK 507

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           +KNI +      +    + D   +RQ+++N++SNA+KFT  GG + ++            
Sbjct: 508 DKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGG-IVISCYCNQANNASIN 566

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                I D G G+++  +  +   F Q   +      G GLG+ I  S+     G+  ++
Sbjct: 567 QVTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQ 626

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S+   G +   +LP  R    
Sbjct: 627 SEEGVGTKFQIMLPLKRAEAS 647


>gi|298528571|ref|ZP_07015975.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512223|gb|EFI36125.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 533

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 141/313 (45%), Gaps = 23/313 (7%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-- 245
               +++ ++   T +       N  I+  +  +       E+ ++ +   +K A E   
Sbjct: 78  LPFILVSGSIGEETAVEAMKAGVNDYIMKDKLARLAPAVRRELKEAENRRAKKEAHEALV 137

Query: 246 ---------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                    + AKS FLA+MSHE+RTPLN I+G  +++    +        +EYI     
Sbjct: 138 AAKEAAEVASRAKSEFLANMSHEIRTPLNGIVGMLQLLSSTGLDT----EQEEYIRLGQS 193

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + Q L  L+++ILDLS IEAGR  + E+  S+  +      +  + A+EK I     +DP
Sbjct: 194 AAQRLTRLLSDILDLSSIEAGRMYIRENPFSISHVCESIHDLFIITAREKGIHFDISLDP 253

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGI 412
            +   V  D   + Q++ NL+ NA KFT  G   + + +          +IS+ D G GI
Sbjct: 254 QIPKKVMGDATRVSQILFNLVGNAFKFTDQGSISLDIRLAEQEQDRLLLHISVADTGTGI 313

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +I  +   F Q   +     QG GLGL + Q ++    G+  + S + +G  +   +
Sbjct: 314 PPDKINELFQPFTQADGSYTRKYQGAGLGLVVVQRLLDLLEGRIEVDSIVGQGTTMHVSM 373

Query: 473 PNTRVLNFIPEDN 485
           P       +PE++
Sbjct: 374 PLK----TLPEED 382


>gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 591

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + +++ +    +   A EKNI +   +   +   +  D   
Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQIVINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1401

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 18/296 (6%)

Query: 188  SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEE 244
            +LA ++   L F   +               AEK     E + A+ L ++ R   +R +E
Sbjct: 813  TLAYIIYMVLFFGALLLIRQRGIQKIRRQFIAEK-----EKQEARLLIEQERQEIRRMQE 867

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             +  K++FL ++SHE RTPL+ I+     +         ++  K+ +  I ++ + LLNL
Sbjct: 868  LDQLKTKFLTNVSHEFRTPLSLIMAPVNKMLTR-----ADQEQKQQLNMIRKNARRLLNL 922

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            +N++LD  ++E    +L      +I  + E        A+EK I+              D
Sbjct: 923  VNQLLDFRKMEVQELKLHSKPGDIIKFIGEISQSFTDIAEEKEIDFVFDTTVDAMFTSFD 982

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPT 419
               + +++ NL+SNA KFT  GG+V V +        S     I + D G GI   +   
Sbjct: 983  HDKIERILFNLISNAFKFTPAGGQVSVLLNVDQQTANSDTSLEIKVIDTGIGIPPEKHSK 1042

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F Q  +      QG G+GL I +  +  HGG+  + S+   G   I  +P  
Sbjct: 1043 IFERFFQHDVPESMINQGSGIGLAITREFVKMHGGEITVESEPDHGSCFIIKMPLA 1098


>gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 764

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +    ++  + Y   I  SG+ LL +IN++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SDEQQLYANTIKNSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEA + EL      L   V E +++LQ  A++K + +    D  L +    D   
Sbjct: 272 LDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422
           +RQV+ NL+ NAVKFT+  G V + +   S         +++I+D G GI E ++  +  
Sbjct: 332 IRQVLTNLVGNAVKFTSE-GHVALQITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFG 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480
            F Q         +G GLGL I++ ++   GG+  + S+  +G        LP     + 
Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELPLAEGAST 450

Query: 481 I 481
            
Sbjct: 451 S 451


>gi|17228884|ref|NP_485432.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130736|dbj|BAB73346.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 811

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 14/250 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   ++++ A+  N AKS FLA+MSHELRTPLN ILG +++++  +  P   E  + +I
Sbjct: 324 QAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSTLP---EQEQHHI 380

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I + G HLL LIN+ILDL++IEA + EL    +     ++    + Q+RA +K+I   
Sbjct: 381 NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFV 440

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQY 402
            +   +L   +  D K +RQV+LNLL NA+KFT   G+V + V                 
Sbjct: 441 YEPASNLPIWLHIDAKRLRQVLLNLLGNAIKFT-DHGQVKLKVETIEESSTQKPVKHRIR 499

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I+D G GI + E+  +   F Q     K   +G GLGL I + ++   G    + S++
Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEK-KRQTEGTGLGLAITRQLVQMMGSDIHVTSQV 558

Query: 463 REGVEVIAIL 472
             G      L
Sbjct: 559 GHGSTFWFEL 568


>gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
 gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
          Length = 409

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 8/302 (2%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            V  ++ +G +  +L  F +  Y   + ++ +L   +     + ELE       +     
Sbjct: 111 GVPIVTSSGEIYGSLCAFDHNFYEYSQEDIDLLLSLSAFFGDMLELESTIDELKQMEDEN 170

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     KS  LA MSHE+RTP+N I+G S +++L ++    +E  +EY+  I +S + LL
Sbjct: 171 DRILQEKSELLAVMSHEIRTPMNGIMGMSALLQLTSL----DEEQREYVELIEQSSESLL 226

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++I  IL+ S++E  + EL      L  ++++   +     Q K I +   I   +   V
Sbjct: 227 SMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVIGDEVPEKV 286

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTV 420
            AD   +RQV++NL+SNA+KFT+  G V V VG +   +   IS++D G GI       +
Sbjct: 287 TADANKIRQVLINLISNAIKFTSE-GEVSVAVGISPETQAIKISVRDTGIGIPVDRRHRL 345

Query: 421 LTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             SF Q   A       G GLGL I + +     G+  +     EG      +P   ++ 
Sbjct: 346 FKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEETSGEGACFTFTIPLIGMME 405

Query: 480 FI 481
            +
Sbjct: 406 PV 407


>gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
 gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
          Length = 1468

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/397 (26%), Positives = 167/397 (42%), Gaps = 20/397 (5%)

Query: 102  EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            +  + +  +LV  IA G      +L   G      L I     +L  + +++L+ F   +
Sbjct: 764  QAALAKRPILVEDIAAGYLTISSSLGAAGPVNLIVLPIIVEDQVLGVIELASLNRFTQVH 823

Query: 162  AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
              FL      + ++   I++    D  L      A+         L +SN ++       
Sbjct: 824  RAFLEQLVETIGVNVNTIVANARTDSLLTESQRLAI-ELQVGQEELQRSNAELEEKAELL 882

Query: 222  DDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                 ++E   S  ++ R+  E+        +  KS FLA+MSHELRTPLN++L  ++++
Sbjct: 883  ARQNRDIETKNSEIEQARQELEDRAKQLALASKYKSEFLANMSHELRTPLNSLLILAQLL 942

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                   L      EY   IH +G  LL LIN+ILDLS+IEAG+  +S  ++ L  ++  
Sbjct: 943  AQNPARNLT-AKQVEYANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDY 1001

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                 +    EK +     +   +   +  DE+ +RQV+ NLLSNAVKFT   G V + +
Sbjct: 1002 VEATFRPLTTEKGLRFDVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTET-GSVQLRI 1060

Query: 394  GWTS---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                                + D G GIAE  +  +  +F Q          G GLGL I
Sbjct: 1061 ERAGRMELLGVPGQETLAFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSI 1120

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            ++ I A   G+    S L EG      LP   +    
Sbjct: 1121 SREIAALFNGEIRAVSALGEGSTFSLCLPIADITPSA 1157


>gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1023

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +V +      ++ AE  + AK+ FLA MSHE+RTPLN ++G   ++E  ++G  
Sbjct: 485 HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTSLGA- 543

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +EY+  I  SGQ+LL L+N+ILDLSRIE+G+  L    +SL  +  E I + +  
Sbjct: 544 ---EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPVSLKKLTSEVINLFRPM 600

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
           A+EK + I   I  S+   + +D   +RQ++ NLL N++KFT   G+V + V        
Sbjct: 601 AEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK-GKVLLKVEAEKFPNN 659

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD G GIAE ++  +  +F Q   +      G GLGL I++ +     G+ +
Sbjct: 660 KFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEII 719

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++S++ +G E    +   ++   IP    E
Sbjct: 720 VKSQVNQGSEFTLSILVEKLEYEIPAGIQE 749


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           L ++ FLAS+SHELRTPL  I G+++++    +   + +    Y+  IH     L +LI 
Sbjct: 233 LERNDFLASISHELRTPLTYIKGYADIVHKRNLSIEDRDK---YLNIIHEEANRLSDLIK 289

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++ DL++++   + + +  I L D + +         QEK +E+        + + AD  
Sbjct: 290 DLFDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVICPKE-AVIIADPT 348

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q+I NLL NA+K++  G +  ++V        YI ++DNG GI E ++P +L  F +
Sbjct: 349 RLEQIIFNLLDNAIKYSPPGAKTILSVNNKKKD-VYIKVRDNGKGIPEEDLPYILNRFYR 407

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   +  G GLGL I + ++  HGG   +RSK  +G E   + 
Sbjct: 408 VDKSRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVF 453


>gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 955

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/477 (23%), Positives = 190/477 (39%), Gaps = 30/477 (6%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           +  TG    +  P     D  +     ++L     I     L++ N+  +         W
Sbjct: 188 LRVTGIRPIMVAPHLASLDSTLRVNGFKTLGVALLIGFFATLMLGNLAIYLYTGNSKYKW 247

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
            +++   +A+ ++         +K     +  + L+   I          + +       
Sbjct: 248 FVLSNLTFASFVATTNYQHLFVVKNLPTVIMTVGLVGQAIVATTVRQFFEISKHNKKINA 307

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI----MSMHVLDISLAG 191
            L I   A L ++ S  AL   + P     +  P+ + +                I +  
Sbjct: 308 ILLICVWAVLGVSASAFALPEEIHPKLSIYAVMPLTLVVFLACFDCLKRDRVPALIFMGA 367

Query: 192 MLATALSFFTY---ITYHLFKSNVK------ILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            L   L+ FTY   I   L   +        ++        L   +E   +     R+ A
Sbjct: 368 WLGATLAAFTYNWAIKGGLSFVHPSFMWVSFVVEAMCMSILLAYNIETLSAQ----RQAA 423

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +S FLASMSHE+RTP+ A+LGF  +    ++        ++Y+  I+ +  HL+
Sbjct: 424 EAMAQTRSSFLASMSHEIRTPMTAVLGFLNL----SLHLRAQGQLRQYLLKINAAANHLM 479

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            +IN+ILDL++IEAG+ EL      +  ++++   +L   A E   E+   + P L   V
Sbjct: 480 GIINDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNELVVSVQPGLPRRV 539

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAE 414
             D   ++QV+LNL SNAVKFT  GG V + V   +              + D G GI  
Sbjct: 540 TGDSLRLKQVLLNLSSNAVKFTH-GGTVRLAVHAAADATPVHDAVTLRFEVSDTGIGIDP 598

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +P + TSF Q   A      G GLGL I++ ++   GG   +RS+  EG      
Sbjct: 599 AVLPRLFTSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITVRSRPGEGSIFEFT 655


>gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
 gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
          Length = 1138

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 182/412 (44%), Gaps = 16/412 (3%)

Query: 75   WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
            W   +  + A   +   +                  +       +  T    V       
Sbjct: 733  WEGKSALMLALTPAGASEAERQARDAESAAEASRLRMEIDELRSILETATDGVVVLGQEG 792

Query: 135  EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
            +  T+ +SA+ L             + L       AV      +        +      +
Sbjct: 793  DIRTMNRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGLAGHGVASVLNDG--RE 850

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            +         +  F  I      +    +         I + +  +      ++ AE  N
Sbjct: 851  VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 904

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+ +  Y EY GDI RSG+H+L+++N
Sbjct: 905  AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 964

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ++LD+S+IEAG  +L   A+ L + V E + ++Q +A  + + I   +  S+  V AD++
Sbjct: 965  DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1024

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             ++Q+ LN+L+NA++FT  GG++ V+  + +     + I+D G G+   E+   +  F Q
Sbjct: 1025 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1084

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   +    G GLGLP+ +++   +  QF I S   EG  V    P+ RVL
Sbjct: 1085 VTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSAPNEGTLVEVSFPSQRVL 1136


>gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 920

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 2/271 (0%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S + +      + DL    E   ++  E  +  E+    K  FL+ +SHE RTPLN I  
Sbjct: 624 SFLDVTDMIKSQQDLQEVQEKLLAVEREKNEGLEQAMEMKDEFLSFISHEFRTPLNVINT 683

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             + +          E  K Y+G I ++    L L+N ILD++R+ AGR  +++  I ++
Sbjct: 684 AIQTL-NLVYSNQMTEKIKAYMGTIKQNTNRQLRLVNNILDITRVNAGRITINKKNIDIV 742

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            + +     +   A +K + +      +   +  D++   ++ILNLLSNA+KFT  G  +
Sbjct: 743 FLTKAITESVYEFASKKGVRLTFVSKLTKKIIGVDDEKYERIILNLLSNAIKFTPAGKSI 802

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +  ++     I +KDNG GI   +I  +   FGQ   ++    +G G+GL + +  +
Sbjct: 803 IVNL-HSAKTNICIEVKDNGIGIPRNKIDVIFERFGQVESSLSRQAEGTGIGLSLVKRFV 861

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              GG   ++S L +G     +LPN +V+  
Sbjct: 862 EALGGSVSVKSNLGKGTTFKILLPNEKVIEE 892


>gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8]
 gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8]
          Length = 1987

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 151/356 (42%), Gaps = 14/356 (3%)

Query: 136  YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
             + ++         +   L  + L  +  L      V +  +      ++D   A +   
Sbjct: 1625 AVFLFDGNLAYTLAAGELLGTYELGESDLLGAQAGTVLVGIE-GGRHPIVDRFEAALEGE 1683

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLAKS 250
                   +     + +V  L        L     I E    +      +K AEE N  KS
Sbjct: 1684 RTDRRIGVGGRTLRVHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKS 1743

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNET------YKEYIGDIHRSGQHLLNL 304
              LA+MSHE+RTPL +ILGF+E+IE ET                E+ G I +SGQ L++ 
Sbjct: 1744 SLLANMSHEIRTPLTSILGFAEMIEEETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDT 1803

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            +  +L+LSR+EAG  +L+   + L +  RE    L+ RA+ + + +  +         AD
Sbjct: 1804 LTGVLNLSRLEAGEMDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQAD 1863

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              GM+ V+ NL+SNA+K+T   G + + V         I ++D+G G+   +I  +   F
Sbjct: 1864 GGGMQIVLRNLVSNAIKYT-DDGEIRLRVYR-ENGSAMIEVEDSGIGMDPEKIEDLFKPF 1921

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             Q S  +    +G GLGL + +  +    G   + ++  +G  +   LP       
Sbjct: 1922 RQASEGMAREYEGTGLGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEESRET 1977


>gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 554

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN +LG ++ + +E + P      +E +  I +SG+ LL ++N++
Sbjct: 182 KSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPPH----QRERLEVIRQSGESLLAILNDL 237

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LDLS+IEAG+ EL ++   + ++ R         A+ + +     + P+   V+  D   
Sbjct: 238 LDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRGDPLR 297

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ++ NL+SNA+KFT   G V VTVG  SG    + ++D G GI   +   +   F Q 
Sbjct: 298 VRQILHNLISNALKFTEA-GSVRVTVGR-SGGALSLVVQDTGIGIPPEKAARLFQKFEQA 355

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +      G GLGL I + +    GG   + S   EG     +LP  R+
Sbjct: 356 DASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLPLKRI 405


>gi|163814849|ref|ZP_02206237.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
 gi|158449788|gb|EDP26783.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
          Length = 599

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 9/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + + +  +    +    A      ++ FLA+MSHE+RTP+N ILG  ++     M     
Sbjct: 197 VTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMAEDLQ 253

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y++ +         LL LIN+ILD+S++EAG+Y++ E    +   + + +      A 
Sbjct: 254 ADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQVPIAT 313

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +++      ++   V  D + ++QV+  LLSNA+KFT+  G V V +         I
Sbjct: 314 NKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSE-GSVRVKIASMDDGENKI 372

Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G GI+E  +  +   F Q   +      G GLGL I + I+   GG   ++
Sbjct: 373 KIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNITVQ 432

Query: 460 SKLREGVEVIAILPNT 475
           SK   G   I  +P  
Sbjct: 433 SKEDIGSTFIVEIPLK 448


>gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 869

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 3/257 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               E++ L  +L       +  +  AE+ NLAKS FL+SMSHELRTPL AILGF++++ 
Sbjct: 453 RDVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLM- 511

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E+  P      K  I  I ++G +LL LINEILDL+ IE+G+  +S  A+SL ++++EC
Sbjct: 512 -ESSTPAPPPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQEC 570

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           ++M + +AQ  +I++      +   +  D   ++QVI+NLLSNA+K+   GG V +    
Sbjct: 571 VLMSEPQAQLHDIKVVFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQ 630

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           +S      S++D G G++  ++  +   F +      + ++G G+GL +++ ++ + GG 
Sbjct: 631 SSDDMMRFSVRDTGEGLSAEQLGQLFQPFNRLGQ-EANNQEGTGIGLVVSKRLVESMGGV 689

Query: 456 FLIRSKLREGVEVIAIL 472
             ++S +  G      L
Sbjct: 690 IGVQSTVGVGSVFWFEL 706


>gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1066

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 147/320 (45%), Gaps = 20/320 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L ++L    A    +F  +   + +      +    +D+L    E AK L+     RAE 
Sbjct: 636 LTVALVRDAAGQPDYFISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLAS----RAEA 691

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +LAKS FLA+MSHE+RTPLN ++G  ++++   +    ++   +Y     RSG  L  L
Sbjct: 692 ASLAKSSFLANMSHEIRTPLNGLMGMMQLLKTTAL----DDEQLQYADMAIRSGGRLTRL 747

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           + +ILDLSRIEA R  L  +  SL D+           A EK + +    +P L   V  
Sbjct: 748 LGDILDLSRIEAARLTLHVAPFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIG 807

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRGQY--ISIKDNGPGIAEGEIP 418
           DE  +RQ++ NL  NA+KFT   G V V   ++            ++ D G GI + ++ 
Sbjct: 808 DETRLRQILFNLAGNAMKFTVA-GEVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLD 866

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN---- 474
            V  +F Q        +QG GLGL I + +    GG   I S+L  G  V  +LP     
Sbjct: 867 AVGEAFTQVESTYTRDQQGAGLGLAICRELTRLMGGSLTIESELGVGTTVWLMLPFALPR 926

Query: 475 -TRVLNFIPEDNHESTQYKC 493
              V    P D   ++Q  C
Sbjct: 927 GEYVSIDAPMDAPPASQGAC 946



 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 7/365 (1%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L   +A+ +   +L  +   T  P    ++  A    +  I  ++  +   A        
Sbjct: 14  LALALALPVVAFVLQWLLWSTLEPFGWILFFPAV-FFSSQIGGVAGGLAATAESAILGLC 72

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VA      +   V  +S+   +   + F                +  A ++     L  
Sbjct: 73  FVAPYYSFRVGSTVSLVSVLVFIGMGVLFSLTHARLGRARRAAETALAASREA-NDRLRG 131

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A        ++  E +  K+ F A++SHELRTPL  ILG    +             +  
Sbjct: 132 ANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGS---LAKRLGAAETPPEARRD 188

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              + R+ + LL  + ++LD++R++AGR EL  +   +    R      +  A+E+ I +
Sbjct: 189 YRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGISL 248

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                P   +   D + +R+++ NLLSNA KFT  GGRV + +  T      +++ D+GP
Sbjct: 249 TVD-APRALTAEVDVEKVRRILQNLLSNAFKFTPDGGRVEMRLART-DGHFRLTVADDGP 306

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + +   V   F Q       +  G GLGL IA+     HGG   + +    G     
Sbjct: 307 GIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFTV 366

Query: 471 ILPNT 475
            LP  
Sbjct: 367 TLPVA 371


>gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 592

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299
             ++   A+  F+A++SHEL+TP+ ++ GF+E +     G +++E  +E ++  I    +
Sbjct: 356 ELKKLEQARKDFVANVSHELKTPVTSLKGFTETLLS---GAVHDEQLREKFLTIISNESE 412

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L +LI+++L+LS+IE  ++ L+   +++  ++ +  +ML+ +AQ KNI   +++     
Sbjct: 413 RLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKNIHFSKEVIGDTV 472

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD   ++QV +N+++NA+ +T   G VHV V         + ++D G GI++ EIP 
Sbjct: 473 -IEADAHRIKQVFINIINNAIMYTPNDGEVHVKV-IEKAETVIVEVQDTGIGISKKEIPR 530

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   A      G GLGL I + ++  H     + S++ +G       
Sbjct: 531 IFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTTFKMEF 583


>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 869

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 11/269 (4%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  +  +         I + + A+   +  ++ AE  + AKS FLA+MSHE+RTPLN +
Sbjct: 451 ERDALGTVIRSVGMVQDITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGV 510

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G  +++E    G    +  K++     +S   L  L+++ILDLSR+EAG+  +      
Sbjct: 511 MGILQLLETSAEG----QEQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFR 566

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L + + + + +    A +  +E+   +DP L  S+  D   ++QV+ NL+ NA KFT   
Sbjct: 567 LHETLVQVLDLFVPTAVQSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTT- 625

Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G V+V       +       + S+ D G GI++ ++  + T F Q S     + QG GLG
Sbjct: 626 GYVNVEAYPLPAKHPGQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLG 685

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I + ++   GG   + S+   G     
Sbjct: 686 LSICKHLVTLMGGNMAVESETGVGTTFSF 714


>gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 893

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 10/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  + L    ++ AE  + AK+  LA++SHELRTPLN ++G  +++E+  +    +
Sbjct: 490 ISEHKQIEELLISAKEMAEATSRAKTELLATLSHELRTPLNGVMGGVQLLEMTDL----S 545

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+  +  S  + L L+N++LDL+ +EA   ++  +  +L++ ++  I + +   +
Sbjct: 546 ADQEEYLQMVRTSATNELALVNDLLDLAGLEASGLKVESTPFNLLESIKLAITLHRSALE 605

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            + + +   +  SL+  V  D + + Q++ NLL NA+KFT  GG + +    T   G   
Sbjct: 606 TRGLPLVTSLPESLAQLVIGDGRRLTQIVSNLLGNAIKFTEQGG-ISLAADCTPCGGSEL 664

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GIAE ++  +   F Q  ++      G GLGL I   +    GG   + 
Sbjct: 665 RLQVRVSDTGIGIAEKDLQRIFEPFVQADMSSTRRFGGTGLGLAICHRLAERMGGSIRVD 724

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           S   EG      LP       + E +
Sbjct: 725 SIPGEGSSFTLELPFLAAAADLAETD 750


>gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 755

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 197/497 (39%), Gaps = 32/497 (6%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILP-LFVLLVANIGTWFTQNP 70
           +   I    + + +  P + +    +  + +         +P  F++       +     
Sbjct: 1   MQASIQRWLNTIKISDPVQREQAVLLQIMLIGLSIICFFTVPTAFIVSSTVGSAFRASLT 60

Query: 71  IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
              +     +AV        ++  +  +    + V    +L+ +      W L   + P 
Sbjct: 61  SILILIFFVIAVMNLRQGHFRR--SVTLASSGLVVGLSIILLLEGLRNSAWILSAFMMPI 118

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
           T +       K    +   SI  ++         L F      L      ++     S+ 
Sbjct: 119 TLSGLLTG-RKGIKTIAGASIIVIAILGGLQLFNLQFVGAYPRLGDLLPPTISTFIFSVL 177

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------ 244
            +      F   +   L ++  +    Q  +D L   ++   +   +     EE      
Sbjct: 178 IVGFFFHRFSASLNDALSRALQRESELQQIRDKLEILVDQRTAALQDALHAVEEREGRLE 237

Query: 245 ---------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                           N  KSRFLA+MSHELRTPLNAI+ F+  ++        +E  +E
Sbjct: 238 KTNIELAAAKTAAEEANQLKSRFLANMSHELRTPLNAIINFTAFLDRYG---EFSERQRE 294

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               +  +  HLL LIN+ILDLS+IEAGR EL      L  I+   +       ++K +E
Sbjct: 295 LQERVLYNADHLLGLINDILDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLE 354

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +   +   L ++  D+  +RQV+LNLLSNAVKFT   G+++VT+         IS++D+G
Sbjct: 355 LELDMPEELPTMVIDKVRIRQVLLNLLSNAVKFTEQ-GQINVTISQPDPETVQISVQDSG 413

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA      +   F Q    +    QG GLGLPI++ ++  HGG   + S   +G    
Sbjct: 414 IGIAPEHQQQIFEEFQQVQNEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFF 473

Query: 470 AILPNTRVLNFIPEDNH 486
             LP   + N +PE   
Sbjct: 474 FSLP---ITNKLPETTT 487


>gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1027

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 144/254 (56%), Gaps = 7/254 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E   A+ + +E R+ AEE + AKS FLASMSHE+RTP+NA++G S+V+    +    N
Sbjct: 617 ITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAVIGLSDVLAETPL----N 672

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  + R+   LL+LIN ILDLS+IE+GR+EL E    L D+      +L+++A+
Sbjct: 673 PEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDLSDMAHGVCSVLRVQAE 732

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQY 402
           +K + +  ++D +L   V  D   +RQ+++NL+ NA+KFT   G V V+V      R  +
Sbjct: 733 QKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQ-GFVKVSVQARDQQRTLW 791

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I D+G GIA  ++  +   F Q   ++     G GLGL I++ ++   GG   + S+L
Sbjct: 792 FGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQLVGLMGGHIGVESRL 851

Query: 463 REGVEVIAILPNTR 476
            EG      LP   
Sbjct: 852 GEGSLFYFSLPLRP 865


>gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 785

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDLS+IEAG  E     ++L ++ R    + + R Q
Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQ 517

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D   + QVI N L+NA KFT   G +         +     
Sbjct: 518 E-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VDNQCIRFY 574

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA  ++  +   F +      S  QG GLGL I + I+   GG+    S++ +
Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGATSEVGK 630

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 631 GSTFFFTIP 639


>gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 646

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +++     E      L    R  AE  N  K  F+A +SH+LR+PLNAILG+S+++    
Sbjct: 394 SDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQ 453

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +       +   +  I R+ Q    L+ ++LD+SR+  G+ +L    + L  I+   I  
Sbjct: 454 LDETT---FTRALETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQVDLAAIIGVAIET 510

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               A+ KNI +   ID S+  +  D   + QV+ NLLSNA+KFT   G++ V + +T  
Sbjct: 511 AYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT-D 569

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I++ D G GI    +P V   + Q     +  + G+GLGL IA+ ++  HGG   +
Sbjct: 570 SEAHITVTDTGIGIKSEFLPYVFDRYRQADC--QHKQHGLGLGLAIARYLIELHGGAIHV 627

Query: 459 RSK-LREGVEVIAIL 472
            S    +G      L
Sbjct: 628 TSPGEGQGTTFTIKL 642


>gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 669

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 16/260 (6%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               + +AEE +  KS FLA+MSHE+RTPLNAI+G S+++    +        +E +  +
Sbjct: 274 LIRAQVQAEEASRMKSAFLANMSHEIRTPLNAIMGLSQLLLRANL----PPQQRECVETM 329

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G+ LL ++N+ILD SRIE GR E+  + + +  ++ E   ++   A ++ + +  + 
Sbjct: 330 RAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQAADQQGLTLAIER 389

Query: 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIK 406
           DPSL  V   D   ++Q++LNLLSNA+KFT   GRV ++    +             ++ 
Sbjct: 390 DPSLPRVVLCDPVRLKQILLNLLSNAIKFTPS-GRVTLSARRATANLGHEGPPRVTFAVH 448

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREG 465
           D GPGI       +   F Q   A+     G GLGL I+  ++   GG    + +    G
Sbjct: 449 DTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGGSGLELDTSPGRG 508

Query: 466 VEVIAI--LPNTRVLNFIPE 483
                   LP  +  +  PE
Sbjct: 509 SVFSFTLALPEPQAAHTRPE 528


>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
 gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
          Length = 1400

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 6/253 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + A +  A+S   + R+  E  E + AK+ F +++SHE RTPL  I+G  E +     G
Sbjct: 329 HVAAGVASARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIVGPLEELRARPDG 388

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              +   +E +  IHRS   L  L+N +LD SR+EAGR +     + L  +V E   + +
Sbjct: 389 V--DARAREELELIHRSALRLGKLVNSLLDFSRLEAGRMQAQYEPVDLAAVVAELASVFR 446

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++  +       P    V+ D     +V+LNLLSNA+KFT   G V V V       
Sbjct: 447 SAVEKAGLTFEVDCPPLPEPVYIDRGLWEKVVLNLLSNALKFTFD-GSVRVAV-RADEGH 504

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D G G+ E E+P +   F +   A   + +G G+GL + + ++  HGG     S
Sbjct: 505 AVVAVADTGIGVPEQEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTISAAS 564

Query: 461 KLREGVEVIAILP 473
             ++G      +P
Sbjct: 565 VEKQGTTFTLRIP 577


>gi|222147417|ref|YP_002548374.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
 gi|221734407|gb|ACM35370.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
          Length = 751

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 142/294 (48%), Gaps = 20/294 (6%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              + G+L  ++ F     +   KS  +              LE       +  + A+  
Sbjct: 193 SAIMLGLLMASVIFLVVTLHRQLKSVRETSR----------RLETMTRELSDAYEAADSG 242

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS+F+A+M HE+RTPLNAILG +E++E      L ++  +  +  I  SG+ LL +I
Sbjct: 243 NRAKSQFMATMGHEIRTPLNAILGMAELLE---YSQLPSDALQS-VKTIRSSGEALLEVI 298

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWA 363
           NEILD S+IE G+ EL E A+ +  +    I ++Q R+ +++ ++   I  SL    V  
Sbjct: 299 NEILDYSKIEHGKLELEERAVDISSLAENTISIMQGRSDDQDNQLVLDIPVSLDALYVRT 358

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTV 420
           D   +RQV+LNLLSNA+KFT   G V + +              ++D G GI E  +  +
Sbjct: 359 DPTRLRQVLLNLLSNAIKFT-QNGVVTLRLREFYRGSALMLRFEVEDTGIGIDETGLAKL 417

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q   +I     G GLGL I + I+   GG+  + S +  G      LP 
Sbjct: 418 FKPFSQVDASISRKYGGTGLGLTICKQIVEKLGGELGMSSTVGVGSIFWFELPV 471


>gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum]
          Length = 1966

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 24/287 (8%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I   ++ +    E +  A++   +K+RFLA+MSHE+RTPL  I G    +    +    N
Sbjct: 1270 INNHKLLEQRLKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDTPL----N 1325

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y   I +S   LL++IN+ILDLS++EAG   ++     +  ++ +   +L   A 
Sbjct: 1326 GEQLDYCHTISQSSDGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAV 1385

Query: 345  EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-----HVTVGWTSG 398
             K++E+   ++      V  D   +RQV+LN++ NA+KFT   G V      +       
Sbjct: 1386 AKDLELSFIVEDDVPPVVCGDRVRLRQVMLNVIGNAIKFTTK-GEVFSRWSVIKDAQVGE 1444

Query: 399  RGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                +  +  D GPG    +   +   F Q   +      G GLGL I++ ++  HGG+ 
Sbjct: 1445 GEVMLQFECHDTGPGFDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRM 1504

Query: 457  LIRSKLREGVEVI----AILPNTRVLNF-------IPEDNHESTQYK 492
              +S+  +G   I      LP     +         P    ES   K
Sbjct: 1505 TAKSQKGKGSTFICSSKFRLPRNPTDSSTTPQAAVTPSAITESPGQK 1551


>gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
 gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
          Length = 911

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 15/324 (4%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----- 225
             AL+   ++      ++ A   A+A                ++L    E   +I     
Sbjct: 585 AGALADADLIRRAERLLAGAIGAASARVALASAVGRAEVGQPELLRMLDETSHVIEYSRR 644

Query: 226 -----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                AELE A         R  E +  K  FL++++HELRTPL ++   SE++      
Sbjct: 645 LEQKSAELERATEALSAANVRLMELDRMKDDFLSTVTHELRTPLTSVRALSEILYDTP-- 702

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L  E  ++++  I +  + L  LIN++LD+++IEAG  +   +++ +  + RE     +
Sbjct: 703 ELPEEQRQKFLATIIKESERLTRLINQVLDMAKIEAGEIDWHIASLDIAALAREAADSTR 762

Query: 341 LRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSG 398
              ++K + +   +   +L     D   + QV++NLLSNAVKF    GGRV +++   + 
Sbjct: 763 QLFRDKGVALELDLPEGNLPPALGDSDRLIQVMVNLLSNAVKFAPAEGGRVRLSLRP-AP 821

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +++ DNGPGIA      V   F Q   A     QG GLGL I + ++   GG+  +
Sbjct: 822 HALEVAVDDNGPGIAPEYHEAVFEKFRQVGSAKTGKPQGTGLGLAICRRLVDGMGGRIWV 881

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S    G      +P        P
Sbjct: 882 ESTPGAGATFRFRIPAAVRQAAAP 905


>gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 676

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 14/247 (5%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               R  AEE +  KS FLA+MSHE+RTPLNAILG ++++    +     +  ++ +  +
Sbjct: 279 LIRARVEAEEASRMKSAFLANMSHEIRTPLNAILGLTQILRKTAL----TDEQRDCVDTM 334

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G+ LL ++ ++LD SR+E GR E+  + + +  ++ E   +++  A E+ + +  + 
Sbjct: 335 RSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEPLAAERGLTLCLER 394

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-------ISIK 406
           DP L  V   D   ++Q++LNLLSNA+KFT   GRV +          Y        +++
Sbjct: 395 DPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQ-GRVTLYASRAREPMAYEGPVAVQFAVR 453

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREG 465
           D GPGI EG    +   F Q    I     G GLGL I+  ++   GG    + S+  +G
Sbjct: 454 DTGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLGGTGLSVTSQPGKG 513

Query: 466 VEVIAIL 472
                 L
Sbjct: 514 SSFFFTL 520


>gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 781

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 13/265 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +++   + ++ A+  N AKS FLA+MSHELRTPLN ILGF++++E        +E    
Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQ---SAELSEKELN 362

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  IH  G HLLNLIN+ILDLS+IEA + EL    + L +++   I M ++RA++K I+
Sbjct: 363 SVKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQ 422

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQ 401
           +  + DP+L + ++ D   ++QV++NLL+NA+KFT   G+V   V   S           
Sbjct: 423 LIYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFT-DHGQVTFRVVLQSLPPDSTQIVCL 481

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GI  G++  +   F + S       +G GLGL ++Q+I+ + G Q  ++S+
Sbjct: 482 RFEVEDTGIGILSGQLEKIFIPFERVSDP-NRYVEGTGLGLALSQTIVQHLGSQIQVKSQ 540

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486
             +G      L  + +    P ++ 
Sbjct: 541 PGQGSLFWLELNLSVLWQEFPAESS 565


>gi|160940185|ref|ZP_02087530.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436765|gb|EDP14532.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC
           BAA-613]
          Length = 852

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 10/258 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               +         ++ R+ A E + AKS FLA+MSH++RTP+NAI+G + +    T   
Sbjct: 318 LRYYSMTRSQLHELEKARQTALESSKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 374

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  +  +  I  S +HLL LIN++LD+S+IE+G+  L+   ISL ++    + ++Q 
Sbjct: 375 DDREQVQSCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLQEVTEGIVNIMQP 434

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           + + K       +D  L+  VW D   + QV+LNLLSNA K+T  GG + +++       
Sbjct: 435 QVKAKKQTFDIHVDNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGAIRLSLSEEKSPK 494

Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +I++KDNG G+++  +  +  S+ +   A     +G GLG+ I + I+    G
Sbjct: 495 GENYVRIHINVKDNGIGMSQDFLKKIYESYSRADSARVHKTEGAGLGMAITKYIVDAMEG 554

Query: 455 QFLIRSKLREGVEVIAIL 472
              ++S++ +G E     
Sbjct: 555 GIEVQSEIGKGTEFRITF 572


>gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1188

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 143/283 (50%), Gaps = 3/283 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L  + +        L ++NV++       +   ++L  A+        R E+ +  KS F
Sbjct: 433 LMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAARLEQSSRYKSEF 492

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   LL LIN+ILDLS
Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +S+   ++    M +  A  +++ +  +  P    +  +D + + Q+
Sbjct: 552 KVEAGQVTVELETVSIDATLQALEEMFKPMAAARHLRLAFERLPGTPDTFISDGQRVTQI 611

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNAVKFT   G V ++V  T G    I ++D+G GIA  ++  +  +F Q   + 
Sbjct: 612 LRNLLSNAVKFT-EHGEVALSVAPTDGGMLRIDVRDSGIGIAPDKLDMIFEAFQQADGST 670

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++      GG+  + S++ +G      LP 
Sbjct: 671 SRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713


>gi|255528162|ref|ZP_05394988.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185529|ref|ZP_06853939.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255508150|gb|EET84564.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050363|gb|EFG89787.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 628

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +F Y       S +  ++ + + + L  ++E    L +ETR    E N   + F +++SH
Sbjct: 323 YFIYEGKQTILSILSDITSEKQVEKLEKDVEKNIKLLNETR----EFNKMITEFFSNISH 378

Query: 259 ELRTPLNAILGFSEVIELETMGPLNN--ETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           EL+TPLN I    +V+ L          E   +Y+  + ++   LL LIN +LD++R ++
Sbjct: 379 ELKTPLNVIFSAVQVLNLYINKNEGENIEKQHKYLKVVKQNCYRLLKLINNLLDITRADS 438

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G  +L     +++ +V +  + +    + K I +    D     +  D   + ++ILNLL
Sbjct: 439 GFLKLHTGRYNIVSVVEDITLSVVSYVESKGINLIFDTDVEEKVINFDADKIERIILNLL 498

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SN++KFT  GG+++V +    G G  IS+KD G GI E ++  +   FGQ    ++   +
Sbjct: 499 SNSIKFTNPGGKIYVNMS-DIGNGVTISVKDTGVGIPEDKLQMIFERFGQVDKTLRRNSE 557

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G G+GL + +S +  HGG   ++SKL EG E I   P         E+N 
Sbjct: 558 GTGIGLCLVKSFVEMHGGTIEVKSKLGEGSEFIIKFPEIITEQQQSEENS 607


>gi|269102304|ref|ZP_06155001.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162202|gb|EEZ40698.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1249

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 7/243 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + +++AE    A++ FLA+MSHELRTP+ +++G  +++E        ++    YI ++
Sbjct: 671 LIQAQEKAERAMQARTHFLATMSHELRTPIASMIGLIDILE----TKNPSQEQLNYIKNL 726

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S  HLL L+N+ILD S+IEAG+ +L       +  +   +I     AQ K ++     
Sbjct: 727 KSSTNHLLYLVNDILDFSQIEAGQLKLDYQPCRWLTEIGLSLINFAQEAQHKGVKFNLFW 786

Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            P+ L+++  D   + QVI NLLSNA+KFT   G + V +  T      + + D G GI 
Sbjct: 787 QPTKLTTLTIDSIRVNQVINNLLSNAIKFTEA-GSISVYIELTQ-HSLLVKVIDTGIGIH 844

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E  I  + + F Q    I     G GLGL I + ++    G+  + S+L EG  VI  +P
Sbjct: 845 EDNIKRLFSPFEQAEKTISRTYGGTGLGLSICKQLVEMMNGKIELHSQLNEGTTVIFKVP 904

Query: 474 NTR 476
            ++
Sbjct: 905 YSQ 907


>gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 889

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           + +    +      +F    Y              E+     E E         R  AE 
Sbjct: 447 IPVHFEVLYELWDMWFEVHAYPAEDGLGIFFRNITERKQAEQEREYLLMREQIARSEAER 506

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  K  FLA +SHELRTPLN ILG++ +++   +      T +  I  I R+ +  + L
Sbjct: 507 ANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNL---EEATRRRGIETIERNAKLQIQL 563

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I ++LD+SRI+ G+  L+  +++L++ + E +  + L  + KNI++   ++ ++  V  D
Sbjct: 564 IEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLAIEAKNIDVKTALNVNVCMVAGD 623

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+I NLL+NA+KFT   G++ V +         I I+DNG GI+   +P V   F
Sbjct: 624 AARLQQIIWNLLANAIKFTPPAGQIQVALERV-NNSAQIQIQDNGKGISSEFLPYVFEYF 682

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            Q    I     G+GLGL I + +   HGG     S     G      LP 
Sbjct: 683 RQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGATFTVNLPL 733



 Score = 37.9 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 52/226 (23%), Gaps = 25/226 (11%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK------IGEVYVW 106
                L  NI  W+  N I  M    T  +        +  ++                 
Sbjct: 145 MPLAGLSHNIPHWWLGNAIGIMAIAPTALLVFTPYFQSQGWLHRTEPLNSGFVSRNFRPS 204

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGT---WTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
              LL     + LC  + TL    T           +     ++  +        +  + 
Sbjct: 205 LHLLLEFSAILLLCLAIATLTVAETNQNGFKLQQLSFLGFVPVLWAATRFGVTSGMLTSS 264

Query: 164 FLSFFPVVVALST--------QAIMSMHVLDI----SLAGMLATALSFFTYITYHLFKSN 211
           F     +   L             +   VL +     L     +             +  
Sbjct: 265 FCVLVTLFAYLVAYPKAMYLATFPVQAEVLHVHKLSLLVQCAVSLFVGIAITERSSIQVE 324

Query: 212 VKILSCQA----EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           + +   +      + +L  +L        E     EE +  K   L
Sbjct: 325 LAVEKVRRGEYQSRAELSEKLIQLNESLVEINDCLEESHREKDELL 370


>gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5]
 gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5]
          Length = 740

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 128/294 (43%), Gaps = 5/294 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +       +      L + N    +        + +   ++      R  A   N AKS+
Sbjct: 177 IQTAFGPRWIAWRETLVRPNANQGAELQCVGRDVTDRAESEHALGLARDHAVSANRAKSK 236

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA  SHE+RTPLN ILG S ++    +    N     Y   +  SG+ L++L+ E+LD 
Sbjct: 237 FLAVASHEIRTPLNGILGMSNLLLDTQL----NPEQAAYAKAVKDSGEALVSLVEELLDF 292

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+ +L      L  ++ E   +L  RAQ + IEI   +D  L   V  D   +RQ
Sbjct: 293 SKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQARQIEIASYVDERLPREVIGDAARLRQ 352

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+LNL SNAVKFTA GG   +             I+D G GIA      +   F Q    
Sbjct: 353 VLLNLASNAVKFTAEGGVALIAEPGIWPNEISFLIRDTGIGIAPDAQQRIFREFEQAGEE 412

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           I     G GLGL I++ I+   GG+  + S +  G      +P        P  
Sbjct: 413 IAREYGGTGLGLAISERIVRRMGGRIALESAIGRGTTFEVSIPLEAADTSAPAA 466


>gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 571

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF   + +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   +       + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G+  + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 575

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 7/284 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  K  S  +E  +   E +     + + +KRAE    A   F+A ++HELRTPLN
Sbjct: 170 MWRDTIEKQFSLISEMINAAFERKYLLDKTLKEKKRAESSERATRDFVAMINHELRTPLN 229

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG +E++E   +     +  K+ +  IH+SGQ L  +IN++LD S++ AG  EL  + 
Sbjct: 230 GLLGSAELMEDTEI----TDYQKKLLETIHQSGQMLRIIINDLLDFSKMSAGMLELKMAN 285

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
                +V+    +   +  EK +     I  +L  ++  D   ++Q+++NL+ NA KFT 
Sbjct: 286 FKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLPQTLMGDIDRVQQILVNLIGNAFKFT- 344

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + + VGW       I + D G GI + +   +   F Q   + +   +G GLGL I
Sbjct: 345 KSGHISLKVGWQKNALVLI-VSDTGCGIPQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSI 403

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + ++    G+   +S+L EG E    LP   V       + ++
Sbjct: 404 CKLLVDAMSGELSFKSELGEGSEFQVKLPLEVVCEQRTHSSEDN 447


>gi|218709306|ref|YP_002416927.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
 gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
          Length = 1223

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 9/242 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NAI+G S +     +        + YI  +  S   LL LI
Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+ ++ +    L +++     ++ LRA ++ +E+  ++D  + + +  D
Sbjct: 533 NDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGD 592

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421
              + Q+++NL +NAVKFT  G  ++ ++V    G       ++ D+G G+ + +   + 
Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLF 652

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           T F Q   +      G GLGL I++ +    GG   + ++L +G      +  TRV + I
Sbjct: 653 TKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSFTI-ATRVSHSI 711

Query: 482 PE 483
            +
Sbjct: 712 QQ 713


>gi|254505580|ref|ZP_05117727.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219551697|gb|EED28675.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 682

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
            G++         I   L+ +  K+     E+              +E R+ AE+  +AK
Sbjct: 174 LGIILLCTIAMILIVSWLYFNQTKLSRDLTER----------TLNLEEARRLAEQSAIAK 223

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           +RFLA+MSHE+RTPLNAI+G S+  +   +   ++E  K Y   I+RSGQHLL LIN +L
Sbjct: 224 ARFLANMSHEMRTPLNAIIGLSQ--KEHYLA--SDEQVKNYASLINRSGQHLLKLINSVL 279

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IE G   L E      +++    I+     +E     F     +   + AD+  + 
Sbjct: 280 DLSKIEQGNVTLYEERFYCSELIDAAKIVFVEAGKEDVDVFFSHQLAADYLLMADKTKLL 339

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           QVI NL  N++KFT   G V V +   S  +   +++ D G G++E ++  V   F Q  
Sbjct: 340 QVITNLGYNSLKFTHH-GHVEVNLTLDSQLQRLILTVSDTGIGMSEAQLGQVFNEFTQAD 398

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            +I     G GLGL I+QS++   GG+  + S+L +G      +P   ++   P+    +
Sbjct: 399 DSISRLYGGTGLGLSISQSLIELMGGKIDVESELEKGTTFTVRVPVM-LMEQKPKVPTAA 457

Query: 489 TQYKC 493
           T  K 
Sbjct: 458 TGQKV 462


>gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1278

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 132/252 (52%), Gaps = 6/252 (2%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I+E +  +      R  AE  N AKS FL++MSHELRTP+NAILGF +++E   +  
Sbjct: 880  LRDISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGFGQLLE---IEA 936

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              NE   +Y+ +I ++G HLL LINE+LDL+RIE+G   LS   +S  +++ EC+ +++ 
Sbjct: 937  GLNEDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKP 996

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             AQ + I I          + AD   ++QV++NLLSNA+K+    G V V V        
Sbjct: 997  IAQVRGITIN-DAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVLVQVA-VQDGFV 1054

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + + D G GI       +   F +  +      +G G+GL I++ +M   GG   + S+
Sbjct: 1055 RLEVSDTGYGIPATRRQELFQPFSRLGVEDAD-IEGTGIGLTISRRLMKMMGGAIGMDSE 1113

Query: 462  LREGVEVIAILP 473
               G      LP
Sbjct: 1114 EGRGCTFWIELP 1125


>gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 915

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 137/252 (54%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      ++ AE+  + KS F+A+MSHE+RTPLN I+GF+E++    +    +
Sbjct: 379 ITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFTELLLETNL----D 434

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +T ++Y+  I++SG  L ++IN+ILD S++E  + +L+   + + ++V E   ++     
Sbjct: 435 DTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEELVSEAFNIVAYSNT 494

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +K +E+   ID ++   VW DE  ++QV +NLLSNA+KFT   G + + V   +      
Sbjct: 495 KKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEE-GEIVLYVKVLADLSEGK 553

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +     ++D G GI + +   + ++F Q   +I     G GLGL I+  I+   G    +
Sbjct: 554 KKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTISNQILELAGSVLQL 613

Query: 459 RSKLREGVEVIA 470
            S+  +G +   
Sbjct: 614 ESEQGKGSDFFF 625


>gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
 gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
          Length = 588

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 352 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 409

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 410 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 468

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 469 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFE 527

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 528 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 615

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 142/265 (53%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++        NNE   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEEDCNNEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V   SG   YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHNGTVTIKSELGKGTEFIIKLPA 585


>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
 gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
          Length = 833

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 34/303 (11%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++  K      E    + +   A  +S+E ++ AE     K++FLA+MSHELRTP++ +L
Sbjct: 265 QALKKTNRHLEETVRALQQANRAIRVSEENKRVAEASAEDKAQFLANMSHELRTPMHGVL 324

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G   ++    +        + Y+   H SG  LL L+N +LDLS+IE  +  L      L
Sbjct: 325 GMLSLLLETQLSS----DQQHYVEVAHESGNILLELLNNVLDLSKIEHNKLALERVEFDL 380

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              + E +++L   A  K +E+    + S+   V  D   ++Q++ NLL NA+KFT   G
Sbjct: 381 RQAIEEVVVILGESANSKLLELVVWQNASVPSRVVGDPIRLKQIVFNLLGNAIKFTTQ-G 439

Query: 388 RVHVTVGWTSGR----------------------------GQYISIKDNGPGIAEGEIPT 419
            V ++    S                                   + D G G++E     
Sbjct: 440 HVEISYAVISENTRRGVVDSAEADFQAQEQDVSESVGDELWIRFDVSDTGVGLSEDVQEK 499

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  +F Q          G GLGL + + I+   GG   + S+L +G +    +P  +   
Sbjct: 500 IFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSKFWFEIPFGKTPQ 559

Query: 480 FIP 482
            +P
Sbjct: 560 TLP 562


>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1284

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 9/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   ++A+      +++AE    +K+ FLA+MSHE+RTP+N +LG  E++ L  +    +
Sbjct: 546 ITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALTPL----D 601

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  +  +  SG  LL +I++ILDLS+IEAG+ EL E  +S  D+V     +L  +A 
Sbjct: 602 EEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAH 661

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402
           +K + +   ID S+   +  D   +RQ++ NL  NA+KFT  G  V  V    T+     
Sbjct: 662 QKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQAAATADPTLI 721

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D+G GI       +   F Q   +      G GLGL I   ++   GG+  + 
Sbjct: 722 RLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVERMGGRIGVE 781

Query: 460 SKLREGVEVIAILPNTRVLNFI 481
           S    G      +   R     
Sbjct: 782 SVPGRGSIFRFTVELARPPEPA 803


>gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 784

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           V        ++ L A +          ++ AE  N AKS FLA+MSHELRTPLN ILG++
Sbjct: 276 VAEEKLLQAQEQLEATVLTRTLQLARAKEEAELANRAKSEFLANMSHELRTPLNGILGYT 335

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++ +        +    + +  IH   ++LL LIN++LDL++IEA + ++  +   L  +
Sbjct: 336 QLFKR---DEALSPNQLKGVDIIHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTAL 392

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            ++ I ++ +RA++K +     + P L   V  DE+ +RQV+LNLL NAVKFT  GG V 
Sbjct: 393 FQDLIHLIGVRAEQKGLRFLADLAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VT 451

Query: 391 VTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           + V   S + Q       ++D G GIA   +  +   F Q         +G GLGL I  
Sbjct: 452 LRVERASTKAQPYRLRFVVEDTGIGIASDHLAGIFKPFQQV-RETGQFIEGTGLGLSITD 510

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL-----PNTRVLNFIPEDNH 486
            ++   GG   + S + EG +   +L     P + V     E + 
Sbjct: 511 QLVQLLGGDLRVSSAIDEGTQFRLLLDLPDCPASTVPGLTAEADT 555


>gi|254438509|ref|ZP_05052003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198253955|gb|EDY78269.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 477

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 150/414 (36%), Gaps = 23/414 (5%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLLVGQIAIGLCWTLL 124
           +        +  +       ++ LG +    D +           + +     G+     
Sbjct: 52  YFDPTAIFAYYGVVALTEMLDVHLGLQAKAWDGQDPVVGRQILKRIALNTAISGMAIAAF 111

Query: 125 TLVEPGTWT---PEYLTIYKSATLLIALSISA-LSNFMLPYAVFLSFFPVVVALSTQAIM 180
            +      T         +  +  + A   ++ +   ++          + +A       
Sbjct: 112 IINIASQQTMVGHFTPLFFLFSGSIFAAMYNSQMIGILILRLSIYGLAFLYIAFLDVFRY 171

Query: 181 SMHVLD--ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
              +          +   L F   I+   + +  + L                  L  E 
Sbjct: 172 LPPLSSNIWLEFFTIIFVLYFIGDISVKFYVNQQERLEQM--------------KLIQEE 217

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +R +     KS+FL+++SHELRTPL +I+G  E+I+ +  G L  +  K  IG   R+ 
Sbjct: 218 NERTKAALEVKSQFLSTVSHELRTPLTSIIGSLELIKADPRG-LLPDNLKPMIGIAARNA 276

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q L  LI+++LDL +IEAG        +   D+V E +      A +  I +        
Sbjct: 277 QRLAALIDDLLDLQKIEAGEMAFHFKPVDANDLVYEAVESTAGYASKLGIHVTTAPCGED 336

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D   + QV+ NLLSNA+KF+  GG V V V  T      IS+ D G GI  G   
Sbjct: 337 CQIAGDRNRLVQVMSNLLSNALKFSDKGGAVKVRVE-TLSTRIRISVHDEGVGIPRGAKD 395

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            V   F Q   +      G GLGL I + I+  H G     S+L  G       
Sbjct: 396 CVFGKFSQVDSSDARKVGGTGLGLNITKQIIGRHNGTVDYVSELGVGSTFYIEF 449


>gi|182624759|ref|ZP_02952540.1| sensor histidine kinase/response regulator [Clostridium perfringens D
            str. JGS1721]
 gi|177910156|gb|EDT72550.1| sensor histidine kinase/response regulator [Clostridium perfringens D
            str. JGS1721]
          Length = 1093

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|168216898|ref|ZP_02642523.1| sensor histidine kinase/response regulator [Clostridium perfringens
            NCTC 8239]
 gi|182381050|gb|EDT78529.1| sensor histidine kinase/response regulator [Clostridium perfringens
            NCTC 8239]
          Length = 1093

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|18310494|ref|NP_562428.1| sensor histidine kinase/response regulator [Clostridium perfringens
            str. 13]
 gi|18145174|dbj|BAB81218.1| two-component sensor histidine kinase/response regulator [Clostridium
            perfringens str. 13]
          Length = 1093

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|168209416|ref|ZP_02635041.1| sensor histidine kinase/response regulator [Clostridium perfringens B
            str. ATCC 3626]
 gi|168213793|ref|ZP_02639418.1| sensor histidine kinase/response regulator [Clostridium perfringens
            CPE str. F4969]
 gi|170712555|gb|EDT24737.1| sensor histidine kinase/response regulator [Clostridium perfringens B
            str. ATCC 3626]
 gi|170714707|gb|EDT26889.1| sensor histidine kinase/response regulator [Clostridium perfringens
            CPE str. F4969]
          Length = 1093

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|169343940|ref|ZP_02864934.1| sensor histidine kinase/response regulator [Clostridium perfringens C
            str. JGS1495]
 gi|169297942|gb|EDS80034.1| sensor histidine kinase/response regulator [Clostridium perfringens C
            str. JGS1495]
          Length = 1093

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 1155

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 4/283 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 445 LEQTNEQLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L+ E  K +   I+ +G  LLNLIN+ILD++++EAG+ E+     
Sbjct: 505 SLILAKLLAENAEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            +  +V     M Q  A  K +    K++P +   ++ D + + Q++ NLLSNA+KFT  
Sbjct: 564 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTER 623

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V + V + +  G   +++D G GIA  +   +  +F Q          G GLGL I+
Sbjct: 624 -GQVSMNVSFQADSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 682

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           + +    GGQ  + S   +G     ILP  R      +   +S
Sbjct: 683 RDLAHLLGGQINVDSSPGQGSVFSLILP-ERYAAEAEDVEPQS 724


>gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
           74-1112]
          Length = 787

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 216 SCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             + E   +     ++     +    E  + AE+ + +KS FLA++SHELRTPL  I+G 
Sbjct: 270 RYRNENVAICVLVDVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGN 329

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            ++++ + +    +      +  ++ S   LL +I++ILD S+IE+ + ++     S  +
Sbjct: 330 LDLLQTKELPKGVD----RLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRE 385

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++             K + ++  I+P +   +  D   ++QVI NLLSNA+KFT   G +
Sbjct: 386 VMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCI 444

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V    G    I ++D G GI   E+  +   F Q    ++   QG GLGL I + ++
Sbjct: 445 VLHV-RADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 503

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
           +   G   + S+   G +    +P 
Sbjct: 504 SMMDGDISVDSEPGMGSQFTVRIPL 528


>gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 562

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            L +S+F+A++SHEL+TPL +I GF+E +        ++ T ++++  I +  + L  LI
Sbjct: 341 ELMRSQFVANVSHELKTPLTSIKGFAETLR----IVDDSATREKFLDIIDKEAERLTRLI 396

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL LS IE+              ++ E + +++  A+ +N+ +  + D S   +  D 
Sbjct: 397 NDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDR 454

Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               Q++LNL+ NAVK++    G V ++     G   ++ I+DNG GI + +I  +   F
Sbjct: 455 DKFYQLVLNLIENAVKYSKEKEGYVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERF 513

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +    + G GLGL I + I+    G+  ++SKL EG      +P
Sbjct: 514 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 560


>gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1309

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E+ + +    + +  AE+ + AKS FLA+MSHE+RTPLN ++GF++++   T+ P   
Sbjct: 646 ITEICLQRDELKKAKLVAEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTP--- 702

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T  +Y+  +++S   LL  IN+ILD S+IEAG+ EL+   + + ++  +   ++  +AQ
Sbjct: 703 -TQHQYLTIVNQSANALLTTINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQ 761

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----G 398
            K +E+   + P +   ++ D   ++QV++NLL NAVKFT   G + + V  TS      
Sbjct: 762 TKGLEVLLNVAPDVPRFIYTDSVRLKQVLVNLLGNAVKFTQQ-GEIELKVTATSVSEPGE 820

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                +++D G GI       +  +F Q   +      G GLGL IA  ++   G Q  +
Sbjct: 821 GAIRFAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLEL 880

Query: 459 RSKLREGVEVIAI 471
            S+   G      
Sbjct: 881 ISEPGAGSCFYFT 893


>gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 442

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 4/286 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++         ++     +   I++  A     I   E  K   +   +R  + +  KS 
Sbjct: 158 LIIYVKDSLRSLSSPEINTLEMIVNQIAITIHQIQLEERLKD-LESENQRLHKTSQNKSD 216

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           +L+ ++HELRTPL  ILGF++++  E  GPL NE  K+YI  I  SG+HLL L+N+ LDL
Sbjct: 217 YLSHINHELRTPLTGILGFAKMLREELYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDL 275

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IEA R E+    I++ DI    I ++  +A+E+ I +  +I  ++     D++ ++Q+
Sbjct: 276 SKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQI 335

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +LNLLSNA+KFT   G V + V  +        I D G GI + +   +   F Q    +
Sbjct: 336 LLNLLSNAIKFTEK-GSVTLAVK-SDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHL 393

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               +G GLGL +++ +   HGG   + S++ +G      +P   +
Sbjct: 394 SRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIPIKPI 439


>gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            L +S+F+A++SHEL+TPL +I GF+E +        ++ T ++++  I +  + L  LI
Sbjct: 351 ELMRSQFVANVSHELKTPLTSIKGFAETLR----IVDDSATREKFLDIIDKEAERLTRLI 406

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL LS IE+              ++ E + +++  A+ +N+ +  + D S   +  D 
Sbjct: 407 NDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDR 464

Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               Q++LNL+ NAVK++    G V ++     G   ++ I+DNG GI + +I  +   F
Sbjct: 465 DKFYQLVLNLIENAVKYSKEKEGYVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERF 523

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +    + G GLGL I + I+    G+  ++SKL EG      +P
Sbjct: 524 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 570


>gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1155

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 4/283 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 445 LEQTNEQLSERTDALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L+ E  K +   I+ +G  LLNLIN+ILD++++EAG+ E+     
Sbjct: 505 SLILAKLLAENGEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            +  +V     M Q  A  K +    K++P +   ++ D + + Q++ NLLSNA+KFT  
Sbjct: 564 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTER 623

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V + V + +G G   +++D G GIA  +   +  +F Q          G GLGL I+
Sbjct: 624 -GQVSMNVSFQAGSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 682

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           + +    GGQ  + S   +G     ILP  R      +   +S
Sbjct: 683 RDLAHLLGGQINVESSPGQGSVFSLILP-ERYAAEAEDVEPQS 724


>gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1039

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 14/276 (5%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +   +    +   + +++K +L+A+     +  +  ++ AE  + AKS FLA MSHE+
Sbjct: 602 AALEQKVADLELARNNLESQKQELVAKS----ADLELAKETAEAASRAKSDFLAIMSHEI 657

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP++ ++G  +++    +        K Y      S   LL + N+ILD S++EAG  +
Sbjct: 658 RTPMSGMVGMIDLLRETPLTA----EQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELK 713

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
                  +   +   I +++ +AQ K ++I   + P L   +  D   +RQ++LNL++NA
Sbjct: 714 AEAIDFDIEHTIGGAISLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNA 773

Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +KFT   G + V   + S         I I D G GI       +   F Q   +I    
Sbjct: 774 IKFTEQ-GAISVKASYHSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKY 832

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            G GLGL I + +    GG+  +RS    G      
Sbjct: 833 GGTGLGLAICKQLALMMGGEIGVRSGPEPGSTFWFT 868


>gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 1061

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 165/388 (42%), Gaps = 13/388 (3%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           +++   +     +       +      G    +           +   + +    + A  
Sbjct: 359 RRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVNPAFCALVNIVKSDLLGQPLRAMAAPR 418

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
             +     +  A+       V  +            +    ++  A   +  +   +   
Sbjct: 419 WLSPLLSTMERAIAKRGLSDVHLVLRTPTGEQKYFHVLHFPVVYEASGAYEALACFILDE 478

Query: 211 NVKILSCQ---AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             ++++ Q        L   ++       + ++ A   + AK+ FLA+MSHE+RTPLNAI
Sbjct: 479 TERLVANQHMENINQRLEQLVDERTVELIQAKEEALAASRAKADFLANMSHEIRTPLNAI 538

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G + V     +    N   + Y+  +  SG+HLL +IN+IL+ SR+EAG+ +L +   +
Sbjct: 539 IGLAHV----ALAMEMNPNLRNYLQKMRASGEHLLEVINDILNFSRLEAGKLKLDQVEFA 594

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG 386
           L+D+++  I ++  +A+ K + +  +I P +   +  D   + Q+++NL +NAVKFT   
Sbjct: 595 LVDVIQRAINLVSDKAEAKGLSLQVEIAPEISPWLKGDPLRLGQILINLCANAVKFTDQ- 653

Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G + + V   + RG      I ++D G GIA G + ++   F Q   +     +G GLGL
Sbjct: 654 GCIQLLVQQKARRGDAINLIIDVRDTGIGIAPGLLASLFQPFHQVDNSNTRRFEGTGLGL 713

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIA 470
            I +S+         + S++ +G     
Sbjct: 714 AICKSLADLMDAHLSVESEMGKGSCFRL 741


>gi|190576120|ref|YP_001973965.1| putative sensor histidine kinase protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014042|emb|CAQ47682.1| putative sensor histidine kinase protein [Stenotrophomonas
           maltophilia K279a]
          Length = 742

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 142/312 (45%), Gaps = 13/312 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +++ V   + +                L +   +     AE+D L    E    L  + 
Sbjct: 2   WVALLVALAAASISALLLGLRLRARNRALAQLQRERSLLAAERDQLRRTTERQGQLEQQL 61

Query: 239 RK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +    AE   LAK  FLA+MSHE+RTPLN IL   E+I    +G    E  ++ +    
Sbjct: 62  LQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLATAS 117

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S Q LL ++++ILD SR+EA   EL  ++ +L D++   + ++Q  A  K + +  ++D
Sbjct: 118 ASSQQLLRIVDDILDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLGLQLD 177

Query: 356 PSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
           PS+   V  D   +RQV+ NLL+NA+KFTA  G+V + V               I D G 
Sbjct: 178 PSVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVQLRVQRLGEGPAQHQLRFEIIDTGI 236

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +     +  SF Q   +      G GLGL I + I+    G+  + S   +G     
Sbjct: 237 GIDDALQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMHGRIGVLSTPGQGATFWF 296

Query: 471 ILPNTRVLNFIP 482
            +P  +V   +P
Sbjct: 297 EIPLLKVPGDLP 308


>gi|323494087|ref|ZP_08099203.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323311714|gb|EGA64862.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 716

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            +   +++ AL+    I   ++ +  K+     E+ D            +E +K AE+  
Sbjct: 188 YTYLAVISAALAMMVGIISWMYLNQSKLSRDLKERTD----------KMEEAKKLAEQSA 237

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK+RFLA+MSHE+RTPLNA++G    +  +      ++  + +I  I+ SG+HLL LIN
Sbjct: 238 TAKARFLANMSHEMRTPLNAVIG----LSHKEYYQGADDQTRSFIAMINNSGKHLLKLIN 293

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +LDLS+IE G+ +L        +++     +    ++     +F         + AD+ 
Sbjct: 294 SVLDLSKIEQGKMKLEHDCFYCSELIELSKTIFVDTSKPDVEILFASPVDHDYQLIADKT 353

Query: 367 GMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            + Q+I NL  NA+KFT  G    ++ + VG  S         + + D G G++E ++  
Sbjct: 354 KLLQIINNLSYNALKFTDSGYVDIQLSIEVGEESTEQSPSYLTLVVTDTGIGMSEEQLSK 413

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           V   F Q   +I     G GLGL I QS++   GG   + S+  +G E    +P  
Sbjct: 414 VFEEFVQADDSITRRYGGTGLGLSICQSLVNMMGGTMEVDSEQDKGTEFRVSIPVQ 469


>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1157

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  + AKS FLA+MSHE+RTPLN ++G+++++     G       +     I  +G  
Sbjct: 663 QAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLD---GTDLGPAARRNADRIRTAGAA 719

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL ++N++LD S++EAG+ E+     ++  ++   + +++  A+ K + +   + P L  
Sbjct: 720 LLTVVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPD 779

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVT---VGWTSGRGQYISIKDNGPGIA 413
            +  DE  +RQ++LNLL+NA+KFTA GG    V V+      T G     +++D G GI 
Sbjct: 780 WIEGDEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIP 839

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-- 471
             +   +   F Q   +I     G GLGL I++S++   GG   + S +  G        
Sbjct: 840 TDKCDRLFRRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVASTVGHGSTFWFEAD 899

Query: 472 LPNT 475
           LP  
Sbjct: 900 LPAA 903


>gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 762

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                K  F+A +SHELRTPL +I    +++    +G L  E   E +     +   L+ 
Sbjct: 514 AIERMKDEFIAVVSHELRTPLTSIHTSLKLLATGLLGQLLAEGQ-EMLTVADENTDRLVR 572

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N +LDL RIE+G   L        +++ E +  +   AQ+ NI I    +    S+WA
Sbjct: 573 LVNNVLDLQRIESGEVTLDAQECEAAELLDEAVESVLTIAQQHNIRIEAHAES--LSIWA 630

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNGPGIAE 414
           D   + + + NLL NA+KF+  G  V +TV           T        ++DNG GI  
Sbjct: 631 DPDYIVRALTNLLGNAIKFSPAGEVVCLTVKAVSSSLEKPSTDQEMALFCVQDNGQGIPH 690

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ ++   F Q   +    + G GLGL I + I+  HGG+    S+L +G      +P 
Sbjct: 691 NKLDSIFERFQQVDSSDSRKKGGTGLGLTICRKIVEQHGGKIWAESQLGKGSRFSFTVPL 750

Query: 475 TRVLNFI 481
             +L   
Sbjct: 751 APLLKES 757


>gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 575

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 156/369 (42%), Gaps = 34/369 (9%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            ++  A L + L++            + ++    V    +    +  + I          
Sbjct: 109 LLFIPAVLTVTLALGWRDGLATLLMAYAAYVGTFVMTGAEWASVLPDVSIFTLIAGQVLA 168

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           + F +    +F++ +                  A        ++AEE    KS FLA++S
Sbjct: 169 ATFVFAGARVFRTQMV----------------QAAIELQRKSEQAEEATRVKSEFLATVS 212

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLN +LG + V++  ++ P  ++     +  I RSG+ LL+ +N++LDLSRIE G
Sbjct: 213 HEIRTPLNGVLGMARVLDDGSLRPDQSDQ----VQAITRSGEVLLSTLNDVLDLSRIEEG 268

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV---WADEKGMRQVILN 374
              +      L  ++     +  + A EK++E F +I P L        DE  + Q++ N
Sbjct: 269 LMVVETRPFDLPAMINGVAQLYVITAAEKSVEFFIEISPDLDLTQKRVGDENRITQILHN 328

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNA+KFTA G    V     +      +++D G G++E E+  V   F Q   +    
Sbjct: 329 LLSNAIKFTAEGRVDLVVSPGETPSDIRFTVRDTGIGMSEAEVRRVFERFTQADQSTSRK 388

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPN---TRV------LNFIPE 483
             G GLGL IA  +    GG+  ++S+   G        LP     RV      +   P 
Sbjct: 389 YGGSGLGLCIASQLATLMGGRIDVQSEPGVGSCFTASLKLPAHDGARVQDGPEAMAVSPP 448

Query: 484 DNHESTQYK 492
            N  +   K
Sbjct: 449 ANTAARDLK 457


>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
 gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
          Length = 1128

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 162/373 (43%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +    +
Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWVAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + D S   +    +         + +S  + +    +++    ELE    +  +
Sbjct: 392 KVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +  +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 449 QNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPAD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI   ++
Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEQL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 685 -----EEEIQATQ 692


>gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1015

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 6/242 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE     KS FLA+MSHE+RTPLN +LGF+++         N+E  ++    I  SG  
Sbjct: 637 AAESLAKIKSEFLANMSHEIRTPLNGVLGFAQI---GYRNAENSEKARDSFAKIQLSGNR 693

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL +IN+ILD S+IEAG+  + ++ + L ++V   + +L+ RA+ K IE+  ++ P L  
Sbjct: 694 LLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLRERARAKQIELQVELAPDLPL 753

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +  +D   M QV+LN+LSNAVKFT + G V ++V           + D G G++  +I T
Sbjct: 754 TCISDPLRMGQVLLNILSNAVKFTEV-GSVTLSVNCR-DGMLLFKVADTGIGMSAEQIGT 811

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q   +      G GLGL I++ I+    G+  I S    G  V   LP  +   
Sbjct: 812 LFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSIDSLPGVGTSVEFCLPYVKPEP 871

Query: 480 FI 481
            +
Sbjct: 872 SV 873


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHEL+TPL  I  ++E +    M   N E  K+++  I      + 
Sbjct: 364 EKLENMRKEFVANVSHELKTPLTTIKSYTETLLEGAM--ENQELGKQFLNVIDNEADRMA 421

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LS  +  + +  +  + L  IV + ++ L + A+ K  E+  K      SVW
Sbjct: 422 RLVRDLLQLSNADYQQTKWDKKEVDLNYIVEKAVLNLSVSAKNKEQELNYKGLREGVSVW 481

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE  + QV+LN++SNA+K+TA GG + V++  T      I I DNG GI + ++P +  
Sbjct: 482 ADENRIEQVLLNVISNAIKYTANGGCIDVSLEETQNH-ATIKITDNGMGIPKEDLPRIFE 540

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  H G   + S+   G  V+  LP 
Sbjct: 541 RFYRVDKARSREMGGTGLGLSIAKQIIDVHEGMIKVDSRESGGTAVLIELPL 592


>gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 968

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K+ F++ +SHE+RTPL AI G  E++    +     E  ++ +     + + LL 
Sbjct: 738 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEA-EQMLKIAVSNSERLLR 796

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362
           L+N IL+L  +++G+  L+     +  +V++ +  +Q  AQ+ +IEI     D   + + 
Sbjct: 797 LVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKIL 856

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ + QV+ NLLSN+VKF+  G +V + V     +   +++KD G G+   ++ T+  
Sbjct: 857 ADEETIIQVLTNLLSNSVKFSHAGTKVEIYVTM-GDKEIIVAVKDYGKGVPPHKLETIFE 915

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q  ++    + G GLGL I ++I+  H G+  + S L  G      LP
Sbjct: 916 RFEQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966


>gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 508

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +++AEE N  KS FLA+MSHE+RTPLNAI+GFS ++         +E  KEYI  
Sbjct: 270 ELLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDYI----QDEDTKEYIHI 325

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  + Q LL LIN+ILDLSRIEAG  E +E  + +   + E +  +        + I   
Sbjct: 326 IEENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDE-MQTMAKLKLPSEVSIRLL 384

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  +    K +RQV+ N LSNA+K T   G + +             ++D G GI 
Sbjct: 385 PGADYCIIHTVPKRVRQVLNNYLSNALKHTEE-GFIDIGYHLPQEDRIRFFVRDTGCGIP 443

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   V   F +      S +QG GLGL I   I     G+  + S   +G E    +P
Sbjct: 444 PEKQKDVFERFVKL----NSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 633

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 10/273 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 370 YQSPDPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 428

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E     + 
Sbjct: 429 VGFSDLL----MTVDDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMPKPVY 484

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ R  E       +  P  +   AD   + QVI N +SNA+KFT   G
Sbjct: 485 LYQFCAMMLQKMKDRVPEGVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKFTHR-G 543

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + +     + R   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 544 TITIGYQIDAARQLEMFVEDTGIGISAENQTAVFDRFMKVD----SFVQGTGLGLPLCKS 599

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           I+   GG+  + S+  +G      LP +  +  
Sbjct: 600 IIEKMGGRIGVTSEFGKGSRFWFTLPVSSCIPT 632


>gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 508

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +++AEE N  KS FLA+MSHE+RTPLNAI+GFS ++         +E  KEYI  
Sbjct: 270 ELLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDYI----QDEDTKEYIHI 325

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  + Q LL LIN+ILDLSRIEAG  E +E  + +   + E +  +        + I   
Sbjct: 326 IEENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDE-MQTMAKLKLPSEVSIRLL 384

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  +    K +RQV+ N LSNA+K T   G + +             ++D G GI 
Sbjct: 385 PGADYCIIHTVPKRVRQVLNNYLSNALKHTEE-GFIDIGYHLPQEDRIRFFVRDTGCGIP 443

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   V   F +      S +QG GLGL I   I     G+  + S   +G E    +P
Sbjct: 444 PEKQKDVFERFVKL----NSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 442

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 4/286 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++         ++     +   I++  A     I   E  K   +   +R  + +  KS 
Sbjct: 158 LIIYVKDSLRSLSSPEINTLEMIVNQIAITIHQIQLEERLKD-LESENQRLHKTSQNKSD 216

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           +L+ ++HELRTPL  ILGF++++  E  GPL NE  K+YI  I  SG+HLL L+N+ LDL
Sbjct: 217 YLSHINHELRTPLTGILGFAKMLREELYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDL 275

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IEA R E+    I++ DI    I ++  +A+E+ I +  +I  ++     D++ ++Q+
Sbjct: 276 SKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQI 335

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +LNLLSNA+KFT   G V + V  +        I D G GI + +   +   F Q    +
Sbjct: 336 LLNLLSNAIKFTEK-GSVTLAVK-SDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHL 393

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               +G GLGL +++ +   HGG   + S++ +G      +P   +
Sbjct: 394 SRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIPIKPI 439


>gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 571

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF   + +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   +       + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G   + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGDINVTSELGVGTKIVITIP 568


>gi|328872878|gb|EGG21245.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1240

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 10/284 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRF 252
            +      +      K+    L     +  + ++LE        + R RA +    K++F
Sbjct: 617 TSLGFMVVFRDITASKAIQSSLEEANNQLSIKSQLEIQKNKELIDARDRALKAIKIKTQF 676

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            A++SHE+RTPLN ++G +E++    +     +  +E    I +SG  L ++ +++LD S
Sbjct: 677 TATISHEIRTPLNGLIGMTEMLLTTNL----TKEQREIAETIQKSGDILHSVTSDVLDFS 732

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371
           +IE  + EL       I  +   +  L +   +K IE     + ++   +  D   +RQ+
Sbjct: 733 KIEESKLELEMIEFDFIGCIENTLSTLSMSCVDKPIEFLLHFEDNVAIKIIGDPIRLRQI 792

Query: 372 ILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           ILN+ SNAVK+T  G     V +           +S++D G GI   +   +   F Q  
Sbjct: 793 ILNVGSNAVKYTNQGHIYTHVSILERVNGKIKIKVSVEDTGIGIPTEKRDRLFEPFSQVD 852

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAI 471
            +I     G GLGL I   +     G+  +  S   +G      
Sbjct: 853 ASITRRYGGTGLGLAICDRLTKLMNGEMTLEKSVEGQGSTFSMT 896


>gi|228938515|ref|ZP_04101123.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971394|ref|ZP_04132020.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978007|ref|ZP_04138386.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228781668|gb|EEM29867.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228788261|gb|EEM36214.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821113|gb|EEM67130.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 466

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK + I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKELHISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGG + I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 374

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 143/247 (57%), Gaps = 5/247 (2%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            EL   ++  +  +  AE  N AKS FLA++SHELRTPLNAILGFSE+I+ +T+   ++ 
Sbjct: 127 TELRQRETDLERAKNEAETANRAKSDFLANVSHELRTPLNAILGFSEIIKSDTL---DSG 183

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
            Y +Y   IH+SGQHLL+LIN+ILDL+ IE+GR+ +S   ++L  +    + M++  AQ+
Sbjct: 184 RYPDYAAAIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIVEMVRPIAQD 243

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             I +   +     +V  D + M Q +LNLLSNA+KF+  GG V ++VG     G  I++
Sbjct: 244 AGIRLRTTVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAAPTGGVCIAV 303

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+A   I  +   F   S      ++G GLGL I +SI+    G+  I+S   +G
Sbjct: 304 VDTGVGMASETIKAIGQPF--ASPGGHVDKRGAGLGLAITKSIVGAMKGELEIQSTPGQG 361

Query: 466 VEVIAIL 472
                + 
Sbjct: 362 TRAEILF 368


>gi|146341588|ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194394|emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 731

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 143/371 (38%), Gaps = 12/371 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             +TLV          +   +           ++      +   +   ++  +       
Sbjct: 215 GNVTLVGLDGIVRARASAGPTGVGSSLAGSPVMAAIQHRSSGSYTVKSLIDGIPRIYSFQ 274

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                  +  +   +   F     +  +  +           +   +   ++    +R  
Sbjct: 275 RIKDQPLVVIVGQASDEIFAAFKRNRDRDLLVGGLLTVVIGIITILIARYQAGLAASRDA 334

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE    A+S FLA MSHE+RTP+N ++G         +        ++    +  S  +L
Sbjct: 335 AEAGTRARSEFLAMMSHEIRTPMNGVIGL----ADLLLSADLAPEQRKIATTLRESADYL 390

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L L+N++LD S+++A R E+      L   V     +L  RA+EK +++   I P + + 
Sbjct: 391 LQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQLTTSIAPDVPTY 450

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEI 417
           V  D   +RQV+ NL+ NA+KFT  G   V V     +G       S+ D G GI    +
Sbjct: 451 VVGDPARLRQVLFNLVGNALKFTEAGSVHVDVRAEDLAGPNLTLVFSVADTGVGIPAEAV 510

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q   +I     G GLGL I + ++   GG   ++SK+ EG      +     
Sbjct: 511 GRLFKQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKVGEGSTFTFSI----Q 566

Query: 478 LNFIPEDNHES 488
           +   P+ + E 
Sbjct: 567 VQPQPQPDVEQ 577


>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1681

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NAILG S ++    +        ++Y+G +H++   LL ++
Sbjct: 959  NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1014

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
            N+ILD S+IEA + ++  +   L D++     ++  + +EKN+     + P L   +  D
Sbjct: 1015 NDILDFSKIEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1074

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421
               + Q+++N  +NAVKF+     V ++        Q      ++D G GI E +   + 
Sbjct: 1075 GLRLGQILINYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQKQGVLF 1134

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             SF Q   +      G GLGL I + +    GG+    S+L  G      L
Sbjct: 1135 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185


>gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 650

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 152/354 (42%), Gaps = 17/354 (4%)

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
                 P  + + +S  +  A    A    +   A    + P   A+    + +      
Sbjct: 13  VFARRFPRLVFMLRSLVVFTAAFCGAYGFIVGSRAESSGYNPHTFAIGASFLFA------ 66

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ETRKR 241
                LA       ++   L    +   +      +L    E A++L +        R  
Sbjct: 67  LACLGLAVQSMRLRWMRRSLHAVALHNEALADRNWELKDAEERARTLLESRGELLTLRDD 126

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+    AKSR LA  SHE+RTPLN I+G S ++   T+ P        Y+  +  SG  L
Sbjct: 127 ADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDTTLTP----EQATYVRAVKTSGDAL 182

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L+LI+E+LD S+I+AG+ EL     +L  ++ +   +L  RAQ + IEI   +D  L   
Sbjct: 183 LSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERLPAQ 242

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   +RQV+LNL  NA+KFT+ GG   +           + I+D G GIA      V
Sbjct: 243 VIGDAARLRQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDTGIGIAPEAQARV 302

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q    I     G GLGL I++ I++  GG+ ++ S+   G      +P 
Sbjct: 303 FREFEQADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIPL 356


>gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           S4-171]
          Length = 591

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + D++ + +  +   A EKNI++          +   +   
Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRDQ 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           N1-067]
          Length = 591

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + D++ + +  +   A EKNI++          +   +   
Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRDQ 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 464

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 148/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   T +   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 462

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L++ +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++  E     + 
Sbjct: 211 ITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATEV----SE 266

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I R+ + LL LIN+ILDLS+IEAG  E   + + +  +V E      +R  
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K++ +          ++ D++ + QV  N +SNA+KFTA  G + +  G          
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAA-GSITIGYGMPENSYIRFY 385

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+      +   F +      S +QG GLGL I+Q+I+    G+  + S+L +
Sbjct: 386 VTDTGTGISSENAQGIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVESQLSK 441

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 442 GSTFWFTLPFYK 453


>gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 812

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E     + 
Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ +  E       +  P  +   AD   + QV+ N +SNA+KFT   G
Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V     + +   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I+   GG   + S+L +G      LP 
Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805


>gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 643

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 22/283 (7%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +   +++  + E     A         +E  +R  E +  KS FL+S+SHELRTPL +
Sbjct: 368 LNRHLEQLVRERTEDLVNKA------RELEEANQRLRELDEMKSAFLSSVSHELRTPLTS 421

Query: 267 ILGFSEVI------------ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ILGF++++            + E +     +  +  +  I   G+ L  LIN++LDL++I
Sbjct: 422 ILGFAKLLHKEFTRNYLPLAQNEPLLVKKGQRIQNNLLIISHEGERLTRLINDVLDLNKI 481

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEK-NIEIFQKIDPSLSSVWADEKGMRQVIL 373
           E+G     +  +++ DIV   +  +     +   + +  +IDP+L  V AD   M+QV++
Sbjct: 482 ESGSMGWRDERLNMSDIVETAVQSVTGLFSQNPQVGLVSEIDPALPVVIADPDRMQQVLI 541

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-K 432
           NLL+NA KFT   G V V      G+   + I D G GI   +   +   F Q   A   
Sbjct: 542 NLLNNAAKFT-DDGSVTVRAFPRFGQ-VRVEIADTGVGIHPEDQNRIFEKFHQTKTATMG 599

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +G GLGL I + I+ ++ G+  + S+  +G   I  LP+ 
Sbjct: 600 DKPKGTGLGLTICREIVEHYSGRIWVESEPGKGSTFIFTLPSA 642


>gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 690

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 12/257 (4%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + A++ ++AK  FLASMSHE+R+PLN ++G + +++   +     E   + +  I  S 
Sbjct: 311 NRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETHL----TEEQIKMVKAIDTST 366

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            HL  +I +ILD S+I A + EL   A+ L+++ + CI +   +A+EK+  I   +  SL
Sbjct: 367 SHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQYIRLSVSQSL 426

Query: 359 SSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIA 413
            +V+  AD   ++Q+++NLLSNAVKFT + G + + +   +        I + DNG G++
Sbjct: 427 KTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKIMVSDNGIGMS 486

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +I  +   F Q  ++      G GLGL I++++    GG   + SK+ +G   I  LP
Sbjct: 487 DDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVDKGSRFIVTLP 546

Query: 474 NTRVLNFIPEDNHESTQ 490
              V    P D  ++ Q
Sbjct: 547 LEIVN---PVDAQQTAQ 560


>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 439

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +            + Q   +DL  ++    +       RAE    AKS FLA MSHE+R
Sbjct: 9   LLEEKSLALFQANRALQQLAEDLEQQVAERTAELQMALDRAEASTRAKSEFLAMMSHEIR 68

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+N ILG ++++E  T+         +Y+  I  SG+ LL L+N+ILD S+IEAG  +L
Sbjct: 69  TPMNGILGMAQLLETTTLDT----EQSDYLDAIRSSGETLLVLLNDILDFSKIEAGYLDL 124

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L + +   + + +  A+ K++ +       L + V  D   +RQV+ NLL+NA+
Sbjct: 125 ERQDFDLQEAIFSTLTLYRPMAEGKSLALDHTFAAGLPTYVRGDRTRLRQVLSNLLANAI 184

Query: 381 KFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           KFT+ G   V V+V   +      ++++D G GI    +  +  +F Q   +      G 
Sbjct: 185 KFTSEGRVHVDVSVRRLADLLMLDVAVEDTGIGIPHNRLDQLFRAFTQVDSSTTRRYGGT 244

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I+  + A   G   + S++ +G      
Sbjct: 245 GLGLAISARLCAAMDGDISVSSRVGKGSIFRFS 277


>gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 798

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPL+A++G+SE++  E       E   + +  I  + +HLL LIN++
Sbjct: 283 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESAARHLLGLINDV 341

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAGR  L+  +  +  ++ +     Q    +K       ++  L ++  D+  +
Sbjct: 342 LDISKIEAGRLTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKL 401

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQ ++NL+ NA KF+   G + ++V       G     ++ D G G+ + +I  +   F 
Sbjct: 402 RQSLINLIGNAAKFS-EDGEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFS 460

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           Q   +      G GLGL I ++ +   GG   + S    G      LP 
Sbjct: 461 QADESTTRQFGGTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPA 509


>gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1133

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/412 (25%), Positives = 184/412 (44%), Gaps = 16/412 (3%)

Query: 75   WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
            W   +  + A   +   +      +           +       +  T    V       
Sbjct: 728  WEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVVVLGRDG 787

Query: 135  EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
            +  T+ +SA+ L             +AL       AV      +        +      +
Sbjct: 788  DIRTMNRSASALFDYDESDMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDG--RE 845

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            +         +  F  I      +    +         I + +  +      ++ AE  N
Sbjct: 846  VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 899

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+ +  Y EY GDI RSG+H+L+++N
Sbjct: 900  AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 959

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ++LD+S+IEAG  +L   A+ L + V E + ++Q +A  + + I   +  S+  V AD++
Sbjct: 960  DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1019

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             ++Q+ LN+L+NA++FT  GG++ V+  + +     + I+D G G+   E+   +  F Q
Sbjct: 1020 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1079

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   +    G GLGLP+ +++   +  QF I S   EG  V    P+ RVL
Sbjct: 1080 VTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQRVL 1131


>gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
 gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
          Length = 554

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ EG     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549


>gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
          Length = 554

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I   I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ EG     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549


>gi|168207377|ref|ZP_02633382.1| sensor histidine kinase/response regulator [Clostridium perfringens E
            str. JGS1987]
 gi|170661247|gb|EDT13930.1| sensor histidine kinase/response regulator [Clostridium perfringens E
            str. JGS1987]
          Length = 1093

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     +  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDIECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1511

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            L KS FLA+MSHE+RTP+NAI+G S +     + P      ++Y+G I ++ QHLL +IN
Sbjct: 779  LLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTP----RQRDYMGKIQQASQHLLGIIN 834

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
            +ILD S+IEAG+  +  +   L  ++     +++ +A+ K +E+   +   +   +  D 
Sbjct: 835  DILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVGDP 894

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
              + Q+++N  +NAVKFT   G V + V   +  G        ++D G G+ + +I  + 
Sbjct: 895  LRLGQILVNYANNAVKFTEA-GEVGIRVRLIAEDGGEAVLRFEVRDTGIGLTQEQIARLF 953

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             SF Q   +      G GLGL I++ +     G+  + S    G      
Sbjct: 954  QSFSQADASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPGAGSTFWFT 1003


>gi|113477573|ref|YP_723634.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
 gi|110168621|gb|ABG53161.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
          Length = 750

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/342 (29%), Positives = 155/342 (45%), Gaps = 25/342 (7%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           +A+  + L   V L F           I S+  L  +   +    L++  ++        
Sbjct: 175 AAILTYCLILVVLLIFIGEFYLTLLPVIRSIQTLKTAATKLDIGTLNY--HLDIQTGDEI 232

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +I     +    +A    +    ++ R+ A+  N AKS FLA+MSHELRTPLN ILG++
Sbjct: 233 QQIAQQFNQMAVKLANSYYSLDFLEQKRQVADAANKAKSEFLANMSHELRTPLNGILGYT 292

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++          E  K+ I  IH+ G HLL LIN+ILD+S+IEA + EL   AI L   
Sbjct: 293 EILSR---SEAWGEKEKKGIDIIHQCGSHLLTLINDILDISKIEARKLELQPQAIHLPSF 349

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++    ++ +R ++K ++     D +L   +  D K +RQV++NLL NA KFT   G+V 
Sbjct: 350 LQGIGEIICIRTEKKGVDFVYLPDANLPEGIVTDPKRLRQVLINLLGNAAKFTEK-GQVT 408

Query: 391 VTVGWTSG-------------RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
             V                      +S  IKD G GI+   +  +   F Q     K   
Sbjct: 409 FKVRIIDSMAEQKKDKAQIPQDNVRLSFQIKDTGIGISPDSLEKIFQPFEQVGEG-KRHS 467

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNT 475
           +G GLGL I  +I++  G    ++S+L  G         P  
Sbjct: 468 EGTGLGLTITDNILSLMGSNIQVKSELGVGSTFTFEIDFPLA 509


>gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1118

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 19/263 (7%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 384 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NER 442

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE- 345
              Y   IH+SG+HL+++IN+ILDL+R+E G+ EL+ S + + ++    +  ++    + 
Sbjct: 443 QARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSEVKTLHNQP 502

Query: 346 --------------KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                         ++ +    I+P L  + ADE  +RQ++++LLSNA KFT   G + +
Sbjct: 503 SKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFTETSGEIGL 562

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V          ++ D G GI E +   +   F Q    +    +G GLGL + +++   
Sbjct: 563 RVNRWE-GWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARL 621

Query: 452 HGGQFLIRSKLREGVEVIAILPN 474
           HGG     S+  +G +   +LP 
Sbjct: 622 HGGDVSFLSQEGKGSQFTLLLPP 644


>gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
 gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
          Length = 919

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A +++ +SL +     AE+ N AKS FLA++SHELRTPL  I+G  E+++  T    
Sbjct: 422 DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 476

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE     +  +  S   LL +I++ILD S+IE+ + ++     +   +V   I      
Sbjct: 477 QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 536

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K++ I+  I+P +   V  D   ++QVI NLL+N++KFT   G + + +        
Sbjct: 537 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 594

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  I D G GI E  +  +   F Q S   +SA +G GLGL I + ++    G   + S+
Sbjct: 595 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 654

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494
              G      +P    LN           + +  +C+
Sbjct: 655 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 691


>gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
 gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
          Length = 598

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        + E   +++  +      ++
Sbjct: 349 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPQFLKVVQDETDRMI 406

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356
            +IN++L LSR++AG  +L+   +++ ++    +    +  +++         I +    
Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   +
Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 525

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 526 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582


>gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis HI4320]
 gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response
           regulator domains] (capsular synthesis regulator
           component C) [Proteus mirabilis HI4320]
          Length = 942

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A +++ +SL +     AE+ N AKS FLA++SHELRTPL  I+G  E+++  T    
Sbjct: 445 DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 499

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE     +  +  S   LL +I++ILD S+IE+ + ++     +   +V   I      
Sbjct: 500 QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 559

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K++ I+  I+P +   V  D   ++QVI NLL+N++KFT   G + + +        
Sbjct: 560 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 617

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  I D G GI E  +  +   F Q S   +SA +G GLGL I + ++    G   + S+
Sbjct: 618 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 677

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494
              G      +P    LN           + +  +C+
Sbjct: 678 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 714


>gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 956

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 178/477 (37%), Gaps = 33/477 (6%)

Query: 30  KMDFDREI-------ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           +  ++             +V++L  ++ +L +    + +       +  F + S + L  
Sbjct: 16  RPAWEARWQEENQKVTLKNVKTLAWIAMVLMMGASTLDHFTYPHLWHHFFIIRSAVALLE 75

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
                +                 +   +L+  +   +    +  +   +  P        
Sbjct: 76  IGLMFTSNTAYGR--------RHYPALMLMVPLLPAVA---IAYMIFSSGDPGSPYYSGL 124

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              L+  +      F            + +A +   I S      S     +  +     
Sbjct: 125 TLCLVGFAFLFQWGFRESVLAVAITMAIYLAATLPHIGSATAPHGSFGQFFSNGVFLIMN 184

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
               +  S+V     + E     +  +  ++  ++   +  E +  K+ F ++++HELRT
Sbjct: 185 SVVVISGSHVHQRIRRNEVISRYSLADN-QAELEQKNLQLVEMDRLKTDFFSNITHELRT 243

Query: 263 PLNAILGFSEVIEL--------ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           PL  ++   + ++            G   +    + +  I+++   LL LIN++LDL+  
Sbjct: 244 PLTLMIAPLQRLQRLYPAGSPQSGNGGAPSSMLHDELTGIYQNALRLLKLINDLLDLASA 303

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
             GR  +S    SL       +  +   A + ++ + Q++   L  V +D++ + +++LN
Sbjct: 304 NVGRMRISHQRFSLRLFTGRLLQSVTNMAHQGDVAVHQQMPEHLEMVDSDQEKLEKILLN 363

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LL NAVKFT  GG V + +  T        + D G GI++  +P +   F Q   ++   
Sbjct: 364 LLFNAVKFTPKGGSVTL-ITNTVNDFLVFEVIDTGIGISQQNLPFIFDRFWQADSSVTRR 422

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-----VLNFIPEDNH 486
             G GLGL + + +    GG+    S    G  +  ++P TR     V+   P ++ 
Sbjct: 423 HPGTGLGLALVKELATRMGGRVEAESIQGAGTTMRVLIPFTRNGDILVVGHAPREDD 479



 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 27/340 (7%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           V + L    + +    D+ L  +   A                      A        L 
Sbjct: 622 VTLMLPIMLVTARSDEDVRLTALRNGANDVMVKPFSLTEFHTRVHNLVHASLLQKELALR 681

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMS-------HELRTPLNAILGFSEVI--ELETMG 280
            A+        RA E +L +S  +A++        HE+  PLN       ++      + 
Sbjct: 682 NAELEQTLAELRAAERDLIQSEKMAALGILTGGIMHEINNPLNFARSALFILDRRTGKLP 741

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +  T KE + DI      +  +I+++      E     +  +A  + + ++  I +L 
Sbjct: 742 EESKGTLKEVVSDIREGINRISTIISDLRTFCHPE----TVMAAACPVSEPIQSAIRILS 797

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF-----TAIGGRVHVTVGW 395
              +E +I++ + +   +  V  D   +  V+LNLL NA+       T       + +  
Sbjct: 798 SPLKEFHIQLHEDVPADIV-VRGDRNQLTLVLLNLLKNAIDALASSMTPDSAPPQIWISA 856

Query: 396 TSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           +S      I I+DNGPGI    +  +   F       K A +G GLGL +   I+  HGG
Sbjct: 857 SSEGTATDILIRDNGPGIPATNLSRIFDPFF----TTKPAGEGTGLGLSVCYRIITAHGG 912

Query: 455 QFLIRSKLREGVEVIAILPNT---RVLNFIPEDNHESTQY 491
                +    G      +P     +    +P ++     +
Sbjct: 913 NISADAAPGGGTVFTIRMPRANLKKAAPVLPAESDAFADH 952


>gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 190/462 (41%), Gaps = 8/462 (1%)

Query: 11  DVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP 70
              L+       L      +    RE+  L    L   + ++   + L A          
Sbjct: 11  AAALVDRAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVVAPIGLSAVTSPAVALPA 70

Query: 71  IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
              M     L     +++L ++  ++ I       + + +  G +        +  +   
Sbjct: 71  GVAMVCAAFLFSAVGSIALARQGSSAGIAAQSAEDFFLTVTPGLVLFLDPHGSVATIGGR 130

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
                   +           +      +   A+         A     +    V      
Sbjct: 131 DRRDFLAWMRDPKGRGFLEQVHVSDRILFLQALDDLRRGEDAASVDLRLDRPSVSRDQR- 189

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                    +  +     +     L+    +   ++  +  ++ +      AE  N AKS
Sbjct: 190 ------QFAYLRMDMTARRDVDGELAAVIAQLRDVSIEQQLRAEAQNRAADAESANDAKS 243

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RFLA++SHELRTPLNAILGFS+++  E  G   N+  +EY+  +  SG HLL+++N +LD
Sbjct: 244 RFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLD 303

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           +S+IEAGRYEL   A  +   VR C  ML L+A+ K + +  +I   L  + AD++ ++Q
Sbjct: 304 MSKIEAGRYELILDAFDISSSVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQ 363

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +++NL+ NAVKFT  GG V V           +++ D G GI   ++  +   F Q    
Sbjct: 364 ILINLVGNAVKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLAMLGQPFVQIQND 422

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                +G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 423 YTRRFEGSGLGLSLVKGLVALHGGNFAIASRPGEGTIITVEI 464


>gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis]
          Length = 507

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A +++ +SL +     AE+ N AKS FLA++SHELRTPL  I+G  E+++  T    
Sbjct: 16  DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 70

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            NE     +  +  S   LL +I++ILD S+IE+ + ++     +   +V   I      
Sbjct: 71  QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 130

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K++ I+  I+P +   V  D   ++QVI NLL+N++KFT   G + + +        
Sbjct: 131 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 188

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  I D G GI E  +  +   F Q S   +SA +G GLGL I + ++    G   + S+
Sbjct: 189 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 248

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494
              G      +P    LN           + +  +C+
Sbjct: 249 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 285


>gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 645

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
 gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
          Length = 720

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 13/239 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +     E  + +   I  SG+ LL +IN++
Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETEL----TEEQRLFTSTIKNSGEALLVIINDV 271

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEA +  L      L   + E + ++Q+ A++K +++    D  L +    D   
Sbjct: 272 LDYSKIEAEKLILHAEPFDLERCIHELVTLMQVNARDKGLDVLVDYDLFLPTQFVGDPGR 331

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422
           +RQ++ NLL NAVKFT   G V V V             +++++D G GI   +I  +  
Sbjct: 332 IRQIMTNLLGNAVKFT-ENGHVLVRVTGVYSDTEGRASIHVTVEDTGIGIPPDKIDHIFG 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLN 479
            F Q         +G GLGL I+Q ++   GG+  + S+   G        LP   V  
Sbjct: 391 EFNQVDDERNRKFEGTGLGLAISQKLIRMMGGKIWVESEPGNGSIFGFSISLPVAEVGE 449


>gi|51473428|ref|YP_067185.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
 gi|51459740|gb|AAU03703.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLATNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DIH +G+HLL++IN+ILDLS+  A + ++    + L  ++   +I+++
Sbjct: 299 --DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  +E+  ++      + AD K ++QV+LNLLSNAVKFT  GG V + +      +
Sbjct: 357 PRADQAEVELISRLPKEHIVINADPKRLKQVLLNLLSNAVKFTNTGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L+ FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSEFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           S++ +G  V    
Sbjct: 477 SQINKGTTVTITF 489


>gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 531

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      + +AE  +  KS FLA+MSHE+RTPLN+I+GF+ +I        + 
Sbjct: 289 IDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIAE----LDDR 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  +  + + LL LI++ILDL++IEAG  + +   + + D  ++ +    ++ +
Sbjct: 345 EERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QV+ N ++NA+KFT+  G++ +      G      
Sbjct: 404 DKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSE-GQILLEYHPVEGTGQIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   + TV   F +      +  +G GLGL I +SI+ + GG     S+L 
Sbjct: 463 SVTDTGMGIAPDAVATVFDRFVKL----NTFAKGTGLGLSICKSIIEHLGGTIGAESELG 518

Query: 464 EGVEVIAILPNTR 476
            G       P   
Sbjct: 519 VGSRFWFRHPCAE 531


>gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
          Length = 1195

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/473 (20%), Positives = 186/473 (39%), Gaps = 58/473 (12%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            + I     L+ A +  W TQ   +       +A   A         +            
Sbjct: 479 SALIAMAVALVSAPLIAWATQGRYYIARRPEPVAGAPARTQRCVVCEHEYEAPDMARCPA 538

Query: 108 IWLLVGQIAI----------------GLCWTLL-------TLVEPGTWTPEYLTIYKSAT 144
               +  +                     W+          +         +  +     
Sbjct: 539 YRGAICSLCCTLDARCGDLCKPKASLAAQWSAALRWLLPRVVWRYLDTGLGHFLLLMLVI 598

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
             +  ++  L        +  +     +A    A+ S  +       +++  ++++  + 
Sbjct: 599 APLLAAVLGLPYHQELNTLAQALIDAPLAAPEMALRSGMLKAYLALLVISGIVAWWLVLA 658

Query: 205 Y------------------------HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +                              ++     AE+  L A  E A+ +++  ++
Sbjct: 659 HKSRQVAQEESNRQTGLLLREIELHRQTDQALQTARQVAEQARLAA--EQARQVAEAAQR 716

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A++ N AKSR+++++SHELRTPLN+ILG+++++      P      ++ +  I R G+H
Sbjct: 717 AADQANQAKSRYISAISHELRTPLNSILGYAQLMSE---DPGLPPQRQQAVHVIRRGGEH 773

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL+LI   LD++RIE+G+  L  + +   D +RE   + +L+A  K +    +   +L  
Sbjct: 774 LLSLIEGTLDIARIESGKLTLEVAPMRFADGLREMASLFELQAAAKGLAFRFEPQGALPE 833

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V ADEK +RQ+++NLL NA+KFT   G+V + V   +     I ++D GPG+    I  
Sbjct: 834 VVRADEKRLRQILINLLGNAIKFTTQ-GQVTLRV-RHAREMARIEVQDTGPGLTASAIER 891

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   A      G GLGL IA+ + A  GG+  + S+   G      L
Sbjct: 892 IFEPFTRAGAADT---PGAGLGLTIAKMLTALMGGELTVSSQPGVGSVFQVKL 941


>gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1588

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 164/420 (39%), Gaps = 27/420 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +       +G+    +  + +  +          L      +   L I     +L  + +
Sbjct: 795  RFRLGQSLVGQAARSKRVIAIDDVPGDYVALGSGLGRTAAASLVVLPIAVEDQVLGVIEL 854

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITY 205
            +++  F   +  FL      V ++   I++    D  L      A  L            
Sbjct: 855  ASMHRFTPVHRAFLEQLMETVGVNVNTIVANARTDELLGESQRLAAELQARSGELQVRQE 914

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L  SN ++    A       ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 915  QLQTSNAELEEKAALLASQNRDIETKNLEIEQARQELETRAQQLSLASKYKSEFLANMSH 974

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN+ L     +  +           EY G IH +G  LL LI++ILDLS++EAG+
Sbjct: 975  ELRTPLNS-LLILAQLLAQNSNRNLTPKQVEYAGVIHSAGSDLLQLIDDILDLSKVEAGK 1033

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
              +    +SL  ++            +K +E   +    +   +  D+  +RQV+ NLLS
Sbjct: 1034 MNVDPERVSLQRLLDYVEATFHPLTTQKGLEFSVRTASGMPGQMLTDDSRLRQVLRNLLS 1093

Query: 378  NAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT  GG V +++              SG      +KD G GI E ++ T+  +F Q
Sbjct: 1094 NAVKFTETGG-VELSIEPAAPEELPLGVRDSGPALAFRVKDTGIGIPEQQLETIFGAFQQ 1152

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                      G GLGL I++ I    GG    +S L EG      LP        P  + 
Sbjct: 1153 ADGTTSRKYGGTGLGLSISREIAQLLGGAITAQSALGEGSTFTLYLPIEHPDWADPPASD 1212


>gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 359

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 11/253 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE   AKS FLA++SHELRTPLN ++G SE+++   +    N     Y   I      LL
Sbjct: 14  EEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQSGYADSIRVCADTLL 69

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++IN++LD S++EAG+  + E  ISL + + E +  L     E+ ++  ++++      V
Sbjct: 70  SIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEMLV 129

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEI 417
             D   + Q+++NLLSN+ KFT   G V V                S+ D G GI + + 
Sbjct: 130 MGDPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 188

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTR 476
             +   F Q   +   +  G GLGL I ++++ N   G   + S+  +G  V   L   +
Sbjct: 189 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSLRFKK 248

Query: 477 VLNFIPEDNHEST 489
           V      D  + +
Sbjct: 249 VPKARAGDQQQRS 261


>gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 812

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E     + 
Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ +  E       +  P  +   AD   + QV+ N +SNA+KFT   G
Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V     + +   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I+   GG   + S+L +G      LP 
Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805


>gi|163788810|ref|ZP_02183255.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
 gi|159876047|gb|EDP70106.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
          Length = 942

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 170/435 (39%), Gaps = 20/435 (4%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L+          +  F  W   +  +Y      G+  + S  K   +    + L    I 
Sbjct: 240 LMSTGAILDSVHSIGFVFWMFFSNCIYFLFWFFGRSFIQSKTKFPILDKLIVGLASIMII 299

Query: 117 IGLCWTLLTL-------VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
                  L L            +  E         L+++++I+   +    Y    +   
Sbjct: 300 QIAVVIFLVLTNSMKPNFLSVGYQAEIHVFTNILGLILSIAIATRKDNFARYFGIGALIG 359

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           + + L      +  +           A S+  +    +F   +        K     +L+
Sbjct: 360 LSLLLYGSMWSAGWIKYPGF-----DAHSWAVFAQIVIFSFGIAYRRQVIMKKHNEEKLK 414

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              S+ +  R +  + +  K+RF A++SHE RTPL  I G       ++          +
Sbjct: 415 AQLSIVEMERIK--DLDKIKTRFFANISHEFRTPLALISGPINRAFKQSAKDEVITISNK 472

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +   I  +   L NL++++LDLS+IE+G+  LS     LI  +R  I   +  A+ +NI 
Sbjct: 473 HFNIIQNNANRLQNLVDQLLDLSKIESGKVHLSLKQGGLIKFLRSIIYSFESMAERENIS 532

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +       L S + D+  + +++ N+LSNA K+T+  G V  T+ + +     + I D G
Sbjct: 533 LNTSFPEELDSAFYDKDKLEKIVTNILSNAFKYTSENGSVTTTIDY-NKNYLNLEITDTG 591

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI + E+  +   F +   +    E+G G+GL + + ++  H G+  + S   +G    
Sbjct: 592 KGIDKEEVKRIFERFYRVEGS---EEKGSGIGLALTKELIELHNGKISVDSTKHKGTTFK 648

Query: 470 AILPNTRVLNFIPED 484
             LP    L  +PE 
Sbjct: 649 VRLPI--TLESLPEA 661


>gi|108805571|ref|YP_645508.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
 gi|108766814|gb|ABG05696.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
          Length = 257

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E  N  +  F+A++SHEL+TP  ++   +E +E       + E  + +   + +  + 
Sbjct: 18  ELERVNRIRRDFVANVSHELKTPATSLKLLAESLEQAI--EEDPEQARLFAAQLRKETER 75

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSL 358
           L  LI ++LDL+R+E+         + L  +V   +  ++  A+EK IE+  K     S 
Sbjct: 76  LARLITDLLDLARLESEERSEYPEIVDLRGVVMSVLARMRRVAREKGIELRWKRFGRASE 135

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            +V  DE  +  ++ NL+ NAVK+T  GGRV VT G  +    +I + D G GI   ++P
Sbjct: 136 YTVRGDETQLASMLTNLVDNAVKYTQPGGRVEVTGGC-ANGEVFIRVSDTGIGIPPDKLP 194

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +   A   A  G GLGL I + +  NHGG+  + S   EG      LP  
Sbjct: 195 RIFERFYRVDKARSKATGGTGLGLSIVKHVAENHGGRVTVESVPGEGSTFTVYLPRA 251


>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
 gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
          Length = 1128

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 162/373 (43%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +    +
Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWVAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + D S   +    +         + +S  + +    +++    ELE    +  +
Sbjct: 392 KVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +  +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 449 QNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPAD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI   ++
Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEQL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 685 -----EEEIQATQ 692


>gi|288957220|ref|YP_003447561.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909528|dbj|BAI71017.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 434

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 163/319 (51%), Gaps = 6/319 (1%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           LP +  +   P+V+  +   +  +      L                +L    V  L  +
Sbjct: 119 LPVSTLIDRQPLVI-EAATPLAEIGRRLARLKPSALATGFLVVEQGRYLGVGTVTGLMAR 177

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +       + ++     +E R++AE    AK+ FLA+MSHE+RTPL A++GF+E++E E 
Sbjct: 178 S-----AEQTDLRARQLEEARQKAERAIRAKTAFLANMSHEIRTPLTAMMGFAELLEQEV 232

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +GP     Y+EY  DI  SG+HL+ LIN++LDLS+ +A R EL E  + ++ +      +
Sbjct: 233 LGPHAIPLYREYARDIAESGRHLMELINDLLDLSKADADRLELVEGTVDVVRVAIGAARL 292

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           L  RA    + I   +   L  + ADE+ +RQ++LNLLSN VKFT   G V +     + 
Sbjct: 293 LAERAARHGVRIATTVPLDLPPLRADERKLRQMLLNLLSNGVKFTPADGVVTLGAHMAAD 352

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++S+ D G G+   E+   L  +GQ   A+   + G GLGLP+ + ++  HGG+  I
Sbjct: 353 GALWLSVHDTGIGMTGEELAKALEPWGQIDSALARVQVGSGLGLPLTKRLIELHGGRLDI 412

Query: 459 RSKLREGVEVIAILPNTRV 477
            S+  +G  +  + P  RV
Sbjct: 413 VSRCDDGTTMSLVFPPARV 431


>gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 374

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 116 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 175

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 176 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 235

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 236 ANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 295

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
           + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 296 LRVRDTGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSA 355

Query: 462 LREGVEVIAILPNTRVL 478
             EG  V    P+ RVL
Sbjct: 356 PNEGTLVEITFPSQRVL 372


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +S F+A++SHELRTP+  + G+SE +  +     + E   E    I+   + +  
Sbjct: 362 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDLEERNEITKIIYDESKRMGR 420

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362
           L+ ++LDL+R+E+G   L +  + +              A+EK+I +    +    + + 
Sbjct: 421 LVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLLFDSEFNDDAMIN 480

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ NL+ NA++ T   G V V V         IS++D G GI + ++P V  
Sbjct: 481 IDEDRIEQVLTNLVDNALRHTEE-GSVTVKVEQEP-TFAKISVQDTGHGIPQDDLPYVFE 538

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   ++ G GLGL IA++I+  H G  ++ S L+EG      LP
Sbjct: 539 RFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|332139982|ref|YP_004425720.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550004|gb|AEA96722.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 941

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 31/407 (7%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVE--PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
           W  +      A    W +    +  P   +     +     LL   +    + +++   V
Sbjct: 419 WLRFAENVSFAN---WKVSYYFDKRPLLMSMSGYLLKDLLLLLALSAFGTFTGYVVAKMV 475

Query: 164 FLSFFPVVVALST----QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                 ++  ++     +               L++    F ++   L  +  ++ S + 
Sbjct: 476 GAPIRRLIRYIAAFNPEKRGGEKAPQRALHIQELSSLSDEFMHLESRLLNAFEELKSAKE 535

Query: 220 EKDDLIAELEVAKSLSDETRKRAEE-------------ENLAKSRFLASMSHELRTPLNA 266
            +  L  EL        E R  AE+              N+AK++FLA+MSHE+RTP+N 
Sbjct: 536 VEQALNVELGELNQSL-EARI-AEKTDHLAKALKEAEAANVAKTQFLANMSHEIRTPMNG 593

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G  E++    +        K     I RS  +LL +++ ILD S+IE+G+  +   + 
Sbjct: 594 IIGSCELMLDSELPEHVAARAK----VISRSAANLLMILDSILDYSKIESGKMRIDIQSC 649

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
           ++ +++     + +  A+ K  +I   +D  +  V   D   + Q+I NLLSNAVKFT+ 
Sbjct: 650 AIRELLESSCELYRHSAKAKEYDIHLNVDSGVPKVLDIDAGKISQIINNLLSNAVKFTSE 709

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V V V + +     + + D G GIA  ++  +   F Q          G GLGLPI+
Sbjct: 710 -GSVSVNVSY-AHHALKVVVSDTGVGIAPEKLDLIFEQFEQADSTTTRHFGGTGLGLPIS 767

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + ++    GQ  + S+L +G      +P         E + +    K
Sbjct: 768 KGLIELLDGQLFVESELGKGTRFTFHIPAAVGKEEEHEPDVDIVDVK 814


>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter sakazakii ATCC BAA-894]
 gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
          Length = 973

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 476 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVD----R 531

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +H S   LL +I++ILD S+IE+ + ++     S  +++       Q     K + 
Sbjct: 532 LVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLG 591

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + VG T G      ++D 
Sbjct: 592 LYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVG-TQGDYLCFRVRDT 649

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + ++   G + 
Sbjct: 650 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQF 709

Query: 469 IAILPNTRV-LNFIPEDNHESTQYKCY 494
              +P  +  L   P  +  S + +C+
Sbjct: 710 TIRIPLWQAQLPPKPNVDGLSNK-RCW 735


>gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum]
          Length = 1969

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 10/250 (4%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                  +D   ++AE  N AK  FL ++SHELRTP+N +L  ++++E  T+      T K
Sbjct: 941  RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 996

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E++  I  SG +LL+LIN+ILD S+IEAG+ E+ +   S++ ++   I ++     EK +
Sbjct: 997  EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGL 1056

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----I 403
            ++F  IDP++   V  D++ ++Q++LN LSN++KFT   G++ + V   +    +     
Sbjct: 1057 DLFIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNH-GQIIIRVKLVTDDSTHSLIKF 1115

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             ++D+G GI    +  +  SF Q         +G GLGL I++ +    GG   ++S+  
Sbjct: 1116 DVEDSGIGIKTEHLNPLFASFSQIDSGNSRKYRGTGLGLSISKRLCKMMGGDVKVKSEFG 1175

Query: 464  EGVEVIAILP 473
             G      +P
Sbjct: 1176 VGSTFSFTIP 1185


>gi|253567906|ref|ZP_04845317.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251841979|gb|EES70059.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 641

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 24/289 (8%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
           +L  +L   L    +  +   +    +L               ++      + RAEE N 
Sbjct: 372 ALVVILVLGLCISLFYYFRTKRLKDDLL--------------KSEKDLRVAKDRAEESNR 417

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHE+RTPLN+I+GFS+V+    +G    E  + Y   I  +   LL LIN+
Sbjct: 418 LKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLIND 474

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSR+EA R  L+     ++ + R+ +  + + +++   +     D     +  D + 
Sbjct: 475 ILDLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQR 533

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           M+QVI+NL+SNA KFT   G++ +             S+ D G GI + +   V   F +
Sbjct: 534 MQQVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEK 592

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                    QG GLGL I + I+    G   I S+   G   I   P  
Sbjct: 593 L----NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFIFSHPLK 637


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/359 (21%), Positives = 158/359 (44%), Gaps = 10/359 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
            +G  W LL  +           +       +L A+ +  +S+  L  ++      + + 
Sbjct: 330 VMGTTWALLVELPEKEAFARIHQLEKLFFFAMLTAIVLVFISSHWLSNSITAPL--LRLT 387

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            + +   +  +         +  +         + +S  + ++      D   ELE    
Sbjct: 388 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITL---IRDQNNELEQNLK 444

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           +  +  +  +  +  K  FLA+ SHELRTPL+ ++G +E +     GP+  ++ +  +  
Sbjct: 445 VISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQ-KSQRRQLEM 503

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQ L NL++++LD  ++  G  ++++ A++L   VR  + +       K + I  +
Sbjct: 504 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 563

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           I   L  V ADE+ + Q++ NL+ NA+K+T+  G++ ++      +   I + D G GI 
Sbjct: 564 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSE-GKIILSSTVLENQ-IRIQVVDTGQGIP 621

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +     Q +  + +  QG GLGL I++ ++   GG   + S+   G      L
Sbjct: 622 AEQLEHIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 680


>gi|330980744|gb|EGH78847.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 645

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L  +    ++     I   A +L  +++          A+ LS     +  + +AI   
Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                    M  +  +    +  H+      +     E        + + +   +TR+ A
Sbjct: 212 D----YHTPMPVSDDAELGALARHINNRAENLHRASLE-------QQRSVAQLIQTREEA 260

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N AKS FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL
Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360
            +IN+ILD SRIE    ++     +L ++V          A ++ + +   I P L   +
Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRTLLLELHIQPGLETLN 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416
           V  D   +RQ+++NL+ NA+KFT   G+V V   W        + +  ++D G GI    
Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDNELLHFTCAVQDGGIGIDAER 435

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++  +F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 493


>gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 550

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 4/234 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ AI GF+E +    +   +  T + +   IHR  + +  
Sbjct: 295 RLEQIRRDFVANVSHELRTPVAAIQGFAETLLEGVIR-EDPATAEHFAQVIHREAERMAR 353

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++LDL+R+E+    L      L D   +     + R +   + +  +  P    VWA
Sbjct: 354 LVQDLLDLARLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWA 413

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTV 420
           D   + QV  NLL NA ++T  GG V V V              ++D G GI    +P +
Sbjct: 414 DRHRLDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRI 473

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +       A  G GLGL I + I+  HGG     S+L  G  +   +P 
Sbjct: 474 FERFYRVDPGRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIPL 527


>gi|229057029|ref|ZP_04196423.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
 gi|228720306|gb|EEL71882.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
          Length = 466

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L + + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EKN+ I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 444 ESEKGKGTTVSIKL 457


>gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
 gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
          Length = 1389

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 7/244 (2%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            K  FL+ +SHELR PLN++LG+S++++ +     +  T  + +  I RS Q   +LI ++
Sbjct: 1007 KDEFLSILSHELRNPLNSMLGWSKLLQKKQF---DQATINKGLAAIERSAQAQAHLIKDL 1063

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            LD+SRI AGR  +    + L+ ++   + +++  A+ KNI+I   + P+  S+  D   +
Sbjct: 1064 LDISRISAGRLRIDAQKLDLVSVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRL 1123

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +QV  NLLSNA+KFT  GG+V +++ +T  + Q I I D G GI+   +P V   F Q  
Sbjct: 1124 QQVFWNLLSNAIKFTPSGGKVTISLDYTDFQAQ-IQISDTGYGISADFLPHVFERFRQAD 1182

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN--FIPEDN 485
             +   +  G+GLGL I + ++  HGG     S+   +G      LP         +P   
Sbjct: 1183 GSRTRSNPGLGLGLSIVRYLVELHGGTIDAESQGEGQGATFTVRLPLQAPQQQISLPIST 1242

Query: 486  HEST 489
              +T
Sbjct: 1243 EPAT 1246


>gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 493]
 gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 630

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E + +AE  + AKS F+A++SH+LRTP+N ILG +++  +        
Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I D+  S   LL L+ +ILD +R+E G+ EL  S  +L  +V   +     + Q
Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K I+I    D SL  S+ ++   +R++ LNL+ NAVKFT   G++ VTV     +    
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI + ++ T+   F + +    S  +G+GLGL I + ++ N GG+  + S 
Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSI 468

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG      +P        P +  E+
Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495


>gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 697

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/240 (35%), Positives = 142/240 (59%), Gaps = 4/240 (1%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +     A     AKS FLA+MSHELRTPLNA++GFS+++  +    +  E  + ++  
Sbjct: 458 ELENAMIAALSAEKAKSTFLATMSHELRTPLNAVIGFSQILMAK--DDMPKEKIRTFVEK 515

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+ SG+HLLNL+N ILD S+IE+GR  L++  I L + + E I++++  A +K+IEI +K
Sbjct: 516 INISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFINETILLVENEALKKDIEIIKK 575

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               + S+ ADE+ ++QVILN+LSNA+KF+     ++++          ISI D G G++
Sbjct: 576 GFFEI-SLSADEQLLKQVILNILSNAIKFSNQNSAINISYKNDEENHI-ISICDEGVGLS 633

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++  +   F Q      +A +G GLGL I+Q I+  H G   ++++  +G      +P
Sbjct: 634 QEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELHNGNIEVKTQSGKGSCFYISIP 693


>gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
            1021]
 gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell
            surface physiology and symbiosis [Sinorhizobium meliloti
            1021]
 gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1134

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/412 (25%), Positives = 184/412 (44%), Gaps = 16/412 (3%)

Query: 75   WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
            W   +  + A   +   +      +           +       +  T    V       
Sbjct: 729  WEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVVVLGRDG 788

Query: 135  EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
            +  T+ +SA+ L             +AL       AV      +        +      +
Sbjct: 789  DIRTMNRSASALFDYDEADMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDG--RE 846

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            +         +  F  I      +    +         I + +  +      ++ AE  N
Sbjct: 847  VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 900

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+ +  Y EY GDI RSG+H+L+++N
Sbjct: 901  AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 960

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ++LD+S+IEAG  +L   A+ L + V E + ++Q +A  + + I   +  S+  V AD++
Sbjct: 961  DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1020

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             ++Q+ LN+L+NA++FT  GG++ V+  + +     + I+D G G+   E+   +  F Q
Sbjct: 1021 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1080

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   +    G GLGLP+ +++   +  QF I S   EG  V    P+ RVL
Sbjct: 1081 VTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQRVL 1132


>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 713

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             D+   +E  + L D  R  AE  N AKS FLA MSHE+RTP+N I+G +EV+    + 
Sbjct: 189 ARDITETVEYQRKLVD-ARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTAL- 246

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +  + Y+  I  S + LL +IN++LD SRIEA R  +  +   L  + +E +++LQ
Sbjct: 247 ---TQDQRLYVDTIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQ 303

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A +K +++    D  L   +  D   +RQV+ NL+ NAVKFT   G + +        
Sbjct: 304 PLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFT-QNGHILIRATGLPDA 362

Query: 400 G-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           G       ISI+D G GIA   I  ++  F Q S       +G GLGL I Q ++   GG
Sbjct: 363 GAGNVLIKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGG 422

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481
           +  + S+   G      LP     +  
Sbjct: 423 EIWVTSEHGVGSCFGFELPLKAQEDSA 449


>gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 407

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLA 248
           +L+  L     +     K+ +     +   + LI    ELE  +        +  E +  
Sbjct: 113 ILSIILRNAIRLHQSETKAQLAYSQLKESHEKLIRSNDELERQRQQIQLQNLKLLEVSRL 172

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FL+++SHELRTP+NAI+GF++++       L++    + +  I  + + L  L+NE+
Sbjct: 173 KSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS-VQTDMLKRILNNAKDLSMLLNEV 231

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD S+I++GR  L      L  +V   +  ++   + K + +  +ID   + V+ D   +
Sbjct: 232 LDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSLSVEIDLENTLVFNDPVRV 291

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ+++NLLSNA+KFT   G V V V  TS     ISI+D G GI+  +   +  +F Q  
Sbjct: 292 RQILINLLSNAIKFTER-GCVWVRVTETSKSRIAISIRDTGIGISNQDCEHIFEAFRQVD 350

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +     G GLGL I  S++   GG+ ++ S+L  G      LP  
Sbjct: 351 QGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGSLFTVELPRQ 397


>gi|269966421|ref|ZP_06180506.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
 gi|269829008|gb|EEZ83257.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
          Length = 858

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK AE+   A++ FLA MSHE+RTP+N ILG +++++         E     I  +  SG
Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +   + K + +  +     
Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKGVNLVIENKIDP 587

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SN+VKFT   G V +                + I D G GI
Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGADNSVLVVEITDTGIGI 646

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I +S++    G   +RS+   G   +  +
Sbjct: 647 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 707 PVKDRERVLTPL 718


>gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
 gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
          Length = 855

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 10/266 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+  S   R++AEE    ++ FLA MSHELRTPLN ILG S++++  ++     +  +E
Sbjct: 462 EAEQQSRLAREQAEESARLRADFLAKMSHELRTPLNGILGASQLLKQNSL----TQEQQE 517

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  SG+HLL ++N+ILD S+IE G++ +  S   ++ +V     +     +EK +E
Sbjct: 518 LVNVLCSSGEHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEKGLE 577

Query: 350 IFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
           +  +        + +D+  + Q++ NLLSNAVKFT   G + + +      G     ISI
Sbjct: 578 LIIECAIEPEIRLHSDQIRLNQILFNLLSNAVKFTHQ-GSICIKLALIQQGGIDKLMISI 636

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA  ++  +   F Q          G GLGL I  S++    G+  ++S++  G
Sbjct: 637 EDTGIGIAATDLQRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEVGYG 696

Query: 466 VEVIAILPNTRVL-NFIPEDNHESTQ 490
                + P   V+   + +    +T 
Sbjct: 697 TRFDLLFPIRIVVNEELSDAEQTNTD 722


>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 662

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 137/274 (50%), Gaps = 17/274 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E+ K L     +  +     KS F A +SHELRTPLN I+G ++++       + N  + 
Sbjct: 142 ELEKELLQLKNEELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLE----VMTNPHHA 197

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y+  I  SG HL+ ++N++LD+S+IE+G+ +  E+ I+L ++++  ++  + +  +K I
Sbjct: 198 DYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKGI 257

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQY 402
           ++   +   +   V  D+  + Q++ NL+ NA+KFT+  G V + + + +      + + 
Sbjct: 258 QVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSE-GEVSIEITFVAPVPSADQAEQ 316

Query: 403 IS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           I     +KD+G GI +  +  +   + Q S        G GLGL I + ++   GG   +
Sbjct: 317 IQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISV 376

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            S+  EG     +LP        P     S  ++
Sbjct: 377 NSRWGEGTIFNFVLPLKLAPEIEP--LTNSPDFR 408


>gi|255014099|ref|ZP_05286225.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 791

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    K L  E  + A   N AK+ FL+ MSH++RTP+NAI+G + +     +   + 
Sbjct: 261 IKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDIRTPINAIVGMTAIA---GLHMDDQ 317

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               + +  I  S + LLNLINE+LD+S++E+ +  L+E A  + +++    +M+Q   +
Sbjct: 318 MRIADCLKKITISSKLLLNLINEVLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFE 377

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
            K  +    +       +  D + ++Q +LN+L+NA+K+T   G++ +TV          
Sbjct: 378 AKKQKFQIHVTKIKHECLIGDVQRIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGY 437

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ DNG G+    +  V   F +         QG GLG+ I++ I     G  L+
Sbjct: 438 GQFEITVTDNGIGMKPEFLEKVFEPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILV 497

Query: 459 RSKLREGVEVIAIL 472
            S+  +G +     
Sbjct: 498 ESEYGKGSKFTMRF 511


>gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 737

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 12/285 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNA 266
           + + I     E  D IA  +  + LS E +   + AE  N AKS FLA++SHE+RTPLN 
Sbjct: 195 TVLVIRFLFQEAGDNIAARQALEHLSQELKDTAREAESANQAKSDFLATVSHEIRTPLNG 254

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG +E++    +   +     +Y+  IH SG  LL LI+++LD S+IEAG  E+     
Sbjct: 255 VLGMTELLRERELDGTS----HQYVETIHESGSQLLTLISDLLDFSKIEAGHLEIERETF 310

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           SL  ++   + +L+ RAQ  ++E+   + PS+      D   +RQV+LNLLSNA+KFT+ 
Sbjct: 311 SLQALIDSLLRLLEPRAQ--HVELISDVAPSVPSHSLGDAGRLRQVLLNLLSNALKFTSR 368

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V + V    G   +  ++D G GI + +   +   F QG+ A+     G GLGL I+
Sbjct: 369 -GSVTLIVKPMRGDWMHFEVRDTGCGIEDADPQRLFQPFYQGASAVHYQ-GGTGLGLAIS 426

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + ++    G+  + S   EG      LP             +   
Sbjct: 427 KRLVEAMQGRIGVSSPAGEGSRFWFELPLPSASETPATAPQQEAD 471


>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 967

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 27/291 (9%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTP 263
           +    +LI E    ++   E  +R EE  L               K +FLA+MSHE+RTP
Sbjct: 271 RTVLLNLIDEANQTRNELLEANRRLEESVLRTQLMAEEAREANAAKGQFLANMSHEIRTP 330

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N ++G ++++    +    ++  ++Y+  I  SG++LL +IN+ILD S+IEAGR EL  
Sbjct: 331 MNGVIGMADLLLETDL----DQEQQKYVQTIISSGRNLLKIINDILDFSKIEAGRLELEH 386

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
               L +++ E   ML   AQ   +E+   I P     +  D + +RQV++NLL NAVKF
Sbjct: 387 EEFELAELLEELGCMLGPEAQAAGLELTLSIAPDGPTRLKGDPQRLRQVLVNLLGNAVKF 446

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T  GG V +                S++D+G GI +  I ++   F Q   +      G 
Sbjct: 447 THEGGEVILESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEPFSQVDGSSVRRYGGT 506

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GLGL I+  ++   GG+  ++S L EG      +    +L   PE    S 
Sbjct: 507 GLGLSISNHLVGRMGGRINVQSTLDEGSTFWFDI----ILEKQPEQLSSSP 553


>gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium
           botulinum H04402 065]
          Length = 464

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   T +   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V ++  +       I +KD G GI++ ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELSTKYKEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|313677456|ref|YP_004055452.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
 gi|312944154|gb|ADR23344.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
          Length = 359

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 154/358 (43%), Gaps = 19/358 (5%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
             ++L+ALSI  ++   L     +    +++     +  S  ++ I L  +    ++   
Sbjct: 7   GVSILLALSIGIVTTAFLSLLEGVGTTALILTFILSSSSSYLLISIVLEFLFFKEINKLY 66

Query: 202 YITYHLFKSNVKILS----------CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            +   L + +   ++           +    ++ +     +   DE ++ A      +  
Sbjct: 67  EVFNKLGEKDYSFVNDLETQKSFNPLRKINQEIFSYAANKQQEIDELKRMA----TYRRE 122

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA +SHEL+TP+ A  GF   +    +   + +   +++    +S   L  L+N++L L
Sbjct: 123 FLADVSHELKTPIFAAQGFVYTLIDGAV--KDKKVRGKFLKKAAKSLDGLEMLVNDLLTL 180

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQ 370
           S IEAG   +    I L+ +V +     + +  +KN+ +          +V AD + + Q
Sbjct: 181 SHIEAGEITMHFEEIDLLALVEDVFDQFEGKTDKKNMSLQLDKSYEGPINVIADYQRIYQ 240

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           VI+NL+SNA+K++     + V     + +   I+I+D+G GI+   I  +   F +   +
Sbjct: 241 VIVNLISNAIKYSDENTEIVVGFEI-NQKEVTIAIQDHGAGISPEHIKRIFERFYRIDKS 299

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IPEDNHE 487
                 G GLGL I + I+  HG    + S + +G      LP  +     +P  + E
Sbjct: 300 RSKERGGTGLGLAIVKHIIEAHGSSVSVTSTVGKGSLFSFKLPVEKEPEPYVPIADEE 357


>gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1134

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 7/350 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185
            EP    PE      SA L   +  + +       A       + + A     I++ +  
Sbjct: 631 FEPSPIGPEGPPCALSAHLGRQVICTDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 690

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 691 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 750

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K  FLA++SHELRTPLNAILG+S +++ +   P         +  I RS +    +I
Sbjct: 751 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 807

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 808 DDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCDGELWFFGD 867

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT  GG V V +         + ++D G GIA   +P V   F
Sbjct: 868 AGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAAEFLPHVFDRF 926

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q          G+GLGL I++ ++  HGG     S     G     +LP
Sbjct: 927 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 976


>gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1300

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 24/309 (7%)

Query: 200  FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            +  +     +  V+       + +L   +       + ++++AE  +  KS FLA+MSHE
Sbjct: 861  YKLLESKQSQIQVQNAELLGHRQNLEKMVATRTRELEVSKEKAERSDRLKSAFLANMSHE 920

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            +RTP+NAI+G  E++  E +     +  + Y   I +S + L+ LI++ILDLSRIE+G  
Sbjct: 921  IRTPMNAIVGLLEIVHKEDL---PEDERETYAEVIRQSSRTLMTLIDDILDLSRIESGEA 977

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEK---NIEIFQKIDP----------SLSSVWADEK 366
             L      + ++  E   + +   +++   ++ +    D               +  D  
Sbjct: 978  TLQLQPCRVDEVCEELYSLFRYVTKKESDGDVVLKLVRDGVEGSLLNEARDEFCLEFDPV 1037

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVL 421
             ++Q++ NLLSNA+KFT  G    +  G+ S            + D+G GI +  +  + 
Sbjct: 1038 RLKQILTNLLSNAIKFTEKG---EILFGYDSENLGSEVRIRFFVSDSGVGIPQDHLEKIF 1094

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              F +         +G GLGL I++ +     G   + S++ +G    A      V    
Sbjct: 1095 DRFHKVEDPDGRVHRGTGLGLTISKRLSEMMSGVIEVNSEVGKGTCFSATFTRPIVECEQ 1154

Query: 482  PEDNHESTQ 490
              D  E+ +
Sbjct: 1155 GPDQSETPE 1163


>gi|229010689|ref|ZP_04167887.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
 gi|229132194|ref|ZP_04261051.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|229166233|ref|ZP_04293992.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228617178|gb|EEK74244.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228651242|gb|EEL07220.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|228750583|gb|EEM00411.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
          Length = 466

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L + + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EKN+ I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 444 ESEKGKGTTVSIKL 457


>gi|91224005|ref|ZP_01259268.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|91190916|gb|EAS77182.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|188039120|gb|ACD47122.1| LuxQ [Vibrio alginolyticus]
          Length = 858

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK AE+   A++ FLA MSHE+RTP+N ILG +++++         E     I  +  SG
Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +   + K + +  +     
Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKGVNLVIENKIDP 587

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SN+VKFT   G V +                + I D G GI
Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGADNSVLVVEISDTGIGI 646

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I +S++    G   +RS+   G   +  +
Sbjct: 647 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 707 PVKDRERVLTPL 718


>gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1009

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                     L +  +  L+ + +I    +  +                          +
Sbjct: 153 YSVMVTLVNSLVVTTALWLIFSWAIRFRLSDAVTQVARA-----------VRNWRFQRRN 201

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRA 242
           + +  +          +     +S +++     +  +L   LE           + +  A
Sbjct: 202 LLVEPISYPYQDELGELVKAFNESRMQLSDSMQDLAELNQNLEAIVTVRTQELQQAKDAA 261

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE   AKS FLA+MSHE+RTP+NA+LG   ++    + P    T   Y+     +   LL
Sbjct: 262 EEATSAKSEFLANMSHEIRTPMNAVLGMLYLLLKTDLSP----TQHNYLAKAQGAAHSLL 317

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
             IN+ILD+S+IEAG+ ++      L  ++ +    +  +A++K IE   + D S+   +
Sbjct: 318 GTINDILDISKIEAGKIDIESVEFGLDAVLGQLTDAIGYQAEQKGIEFLIRYDGSIPPFL 377

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEI 417
             D   + QV+LN+  NAVKFT   G+V +    TS         + ++D+G GIA    
Sbjct: 378 IGDPLRLGQVLLNVCGNAVKFTEQ-GQVELGFLSTSQTEVGLTLQVYVRDSGIGIAREVQ 436

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVE--VIAIL 472
            T+   F Q   +      G GLGL I++S++   GG+  I  S+  +G        L
Sbjct: 437 NTLFKKFTQADQSTTRRFGGTGLGLVISKSLVELMGGRIWIEDSQPGKGTTICFTVQL 494


>gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R]
          Length = 389

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +V +      +++AEE N  KS  +A+M+HE+RTPLNA++GF+ ++        + 
Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAVVGFASLLS----IIDDE 198

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EYIG I  + +HLL L+N+++DLS IE+G  ++  S + L  +++E  +    +A+
Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N+ +    + S + ++ D   + Q++ +LL NA+KFT   G V               
Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI   +   +   F +      S  QG+GLGL + + I+    G   + S++ E
Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 374 GSTFWFTIP 382


>gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 701

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 153/368 (41%), Gaps = 25/368 (6%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           + W ++ L +            K A  +  +++  +          +   P+        
Sbjct: 344 IGWGVIILQQEHEALENEKLFLKLAIAIAIIAVLGVGGLTWILTSRI-IQPITHLTVAAE 402

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +     +  +       L         +            E   L   L+     + + 
Sbjct: 403 TLCNGEWNQRVNINRKDELGILAKAFNQMAW----------ELQKLFTNLQSKNEEAQKA 452

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R  AEE + AKS FLA+MSHELRTPLNAI+G+S+++  E +    +    + +  I+ +G
Sbjct: 453 RTEAEEASKAKSLFLANMSHELRTPLNAIIGYSDMLAEEFLEIELDNFIPD-LQKINSAG 511

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL L+N IL++S IE+G+ +L     ++  IV++ +  LQ  A+++   +       +
Sbjct: 512 KHLLLLVNNILNVSNIESGQIQLDLELFNIETIVKDVVNTLQPLAEKRANILTVNCPEDI 571

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIK 406
            +++ D     Q + ++LSNA KFT  GG V++ V              +        + 
Sbjct: 572 GTMYGDVIKTHQCLFSVLSNASKFT-EGGYVNLEVYRHRNNHQEESEIMSGEEWIIFKVS 630

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G++  +I  V  +F Q   +      G GLGL I +      GG   + S+L +G 
Sbjct: 631 DTGIGMSPEQIGKVFQAFTQADESATRRYDGSGLGLAITKKFCQMMGGDIQVESRLGKGS 690

Query: 467 EVIAILPN 474
                LP 
Sbjct: 691 IFTIKLPA 698


>gi|223983989|ref|ZP_03634147.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
 gi|223964065|gb|EEF68419.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
          Length = 853

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 9/266 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +      D+   + E  + +     + A   + AKS+FL++MSH++RTP+NAI+G + +
Sbjct: 566 AILISRRTDEQRLKAERQQEILKTALENATAASAAKSQFLSNMSHDIRTPMNAIVGMTAI 625

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                  P   E  +  +  I  S +HLL+LIN+ILD+S+IE+G+  +++   +  +++ 
Sbjct: 626 AGAHLNDP---ERVQACLRKISLSSKHLLSLINDILDMSKIESGKLTIAQEPFNFAELIT 682

Query: 334 ECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E + +++ +A+EKN     + +      V  D   +RQV +N+LSNAVK+T  GG + + 
Sbjct: 683 EVVELVRPQAEEKNQIFEFQPERLEKEGVVGDPLRIRQVCINILSNAVKYTPEGGTITLE 742

Query: 393 VGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +   S      +       D G G+    +  +   F +        E G GLG+ I ++
Sbjct: 743 ISQRSSLYKGCQNFVFRCADTGIGMEPEFMTRLFQPFERSDHPQARNENGTGLGMAITKN 802

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           ++    G+  + S   +G     ILP
Sbjct: 803 LVDLMNGEIQVTSTAGQGSVFTVILP 828


>gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 2010

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 23/293 (7%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256
               L  +N ++            E+E   +  ++ R+  EE        +  KS FLA+M
Sbjct: 1270 QEELQTTNEELQEKARLLAHQNQEVERKNTEVEQARQALEEKAKQLALTSKYKSEFLANM 1329

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  S+ +   + G L+     E+   IH SG  LL LIN+ILDLS+IE+
Sbjct: 1330 SHELRTPLNSLLILSDQLCKNSEGNLST-RQIEFSRTIHSSGNELLMLINDILDLSKIES 1388

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G   +  +   L D+        +  A+ +N++   ++   L + +  D K ++Q++ NL
Sbjct: 1389 GTVAMDFAEHRLADLTSYVERTFRHVAEARNVDFVIELGTHLPASIRTDIKRLQQILKNL 1448

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLT 422
            LSNA KFT   G V ++V   SG                  S+ D G GI+  +   +  
Sbjct: 1449 LSNAFKFTHR-GHVTLSVEEVSGGWSADNERLHSAPACIAFSVSDTGIGISADKQQIIFE 1507

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +F Q   +      G GLGL I++ +    GG+  + S   +G      LP +
Sbjct: 1508 AFQQADGSTSRKYGGTGLGLAISRELSKLLGGEIRLISSPNKGSTFTLYLPLS 1560


>gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 391

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +            +   + A++     +++AE+ +++KS FLA+MSHE+RTPLNAI GF+
Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+          E   +Y   I  +   L+ L+N+ILD+S+IEAG  E  ++ + +  +
Sbjct: 190 EVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLL 245

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           + +   + Q+R  E    I    +P  S   +  D   + QV+ N   NA+KFT  G   
Sbjct: 246 LSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303

Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +G+ +     Y  +KD G GI   ++P V   F +        ++G GLGL I+Q+I
Sbjct: 304 -IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A  GGQ    S   EG      +P
Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|270293993|ref|ZP_06200195.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275460|gb|EFA21320.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 615

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  ELEV++    E + RAEE +  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 370 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 426

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILD+SR+EA R  LS  + +++ I ++ +  +  +
Sbjct: 427 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 485

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401
           A+    +   + +  +  +  D + ++QV++NLLSNA KFT   G + + +   T+    
Sbjct: 486 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 544

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI   +   V   F +         QG GLGL I +  +   GG+  I   
Sbjct: 545 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 600

Query: 462 LREGVEVIAILP 473
             +G   +   P
Sbjct: 601 YTDGARFMFTHP 612


>gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
 gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
          Length = 613

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 10/245 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 377 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 434

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 435 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 493

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 494 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 552

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP        P
Sbjct: 553 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPLA------P 606

Query: 483 EDNHE 487
           ++  +
Sbjct: 607 DEEDD 611


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 8/358 (2%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G     +T +  G      +    S T+    + +   + ++P    +         +  
Sbjct: 213 GAALATVTGIHHGHPAAVEVIPPGSETVWPTAAAARGESELVPLEGAVFADLPTGNWAEA 272

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + ++ V      G     +         L       +   A    +   +  A+S   +
Sbjct: 273 PLQALVVPLRQQGGAPYGFMVVGLNRYRPLDDGYRGFVELVA--GHVATGVASARSYQAQ 330

Query: 238 TRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            R+  E  E + AK+ F +++SHE RTPL  I+G  E +         +   +E +  +H
Sbjct: 331 QRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRDRLTDA--DPGLREELEVVH 388

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+G  L  L+N +LD SRIEAGR +     + L  +  E   + +    +  ++      
Sbjct: 389 RNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGLDFRVHCS 448

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           P    V+ D     +V+LNLLSNA+KFT   G + V VG        +++ D G G+A  
Sbjct: 449 PLPEPVFVDRSMWEKVVLNLLSNALKFTFD-GSIRVAVG-VEEGAAVVTVDDTGIGVAAK 506

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E+P +   F +   A   + +G G+GL + + ++  HGG+    S   EG      LP
Sbjct: 507 EMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFTIRLP 564


>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
 gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
          Length = 933

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RVEGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
 gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
          Length = 873

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VAL +Q++ S   + + +     +   ++  +           L      +  I +   
Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +        ++++   AKS FLA+MSHE+RTP+NAI+G SE++        N    +E 
Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H+S  +L+ +IN+ILD S++EAG+  L E    L  +V  C  +   +A +KN+++
Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +  ++ + V  D+  + Q++LNL+ NAVKFT   G V + V  +       S+ D G
Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  +  ++  F Q   +     +G GLGL I++ +++ + G+  +RS    G    
Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNGSCFS 590

Query: 470 AI--LPNTRVLNFIPED 484
               LP     +  P +
Sbjct: 591 FSLQLPKRSQPHSEPVE 607


>gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 981

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 132/276 (47%), Gaps = 9/276 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
              N+  L    +  +L  +  +      +  + A + N +KS FL+SMSH++RTP+N I
Sbjct: 430 RSGNIAGLLIAKDVTELRLKESLYIQALKDASESANQANKSKSEFLSSMSHDIRTPMNGI 489

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E+     +   +    ++ +  I  S   LL+LINE+LD+S+IE+GR  L+E   +
Sbjct: 490 IGMTEIAR---VNIQDTAKVQDCLHKITMSSNLLLDLINEVLDMSKIESGRLALNEREFN 546

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           + ++V      +Q   +EKN  +   I+  +      D   ++Q+ +NL+SNA+K+T  G
Sbjct: 547 IAELVETLFTAVQPLLKEKNHTLNVHINDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEG 606

Query: 387 GRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G +  ++                ++DNG G+    +  +   F +   A +    G GLG
Sbjct: 607 GNIDFSISEFHDNSPAYSKFQFILRDNGMGMTPEFLERLFLPFERADEARQKNIAGTGLG 666

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           + I ++I+   GG   + S+  +G          RV
Sbjct: 667 MAITRNIVHMLGGDITVASEPGKGTTFTVGFSLKRV 702


>gi|240145146|ref|ZP_04743747.1| putative sensor histidine kinase [Roseburia intestinalis L1-82]
 gi|257202824|gb|EEV01109.1| putative sensor histidine kinase [Roseburia intestinalis L1-82]
          Length = 437

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243
            +  +         + +Y L +  +  +   A+   L+ E EV + +    S   ++  +
Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIGKMADNIILVDETEVYEEMRPFISMIKKQHMD 212

Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             N    +  F A++SHEL+TPL AI G++E+I     G  +      +  +IH+S + L
Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LIN+I+ LS ++    +L    + L D+  +CI  +Q++A +  + +    + +   +
Sbjct: 270 QALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             ++  + +++ NL SNAV++   GG V +     + R   I +KD G GI + +   V 
Sbjct: 328 SGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   +   +  G GLGL I + I+A H  Q  + S++  G E+  + 
Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437


>gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1490

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             R + E     K+ F++ +SHELRTPL ++     ++  + + P + E     I      
Sbjct: 1252 ERDKVE---RMKAEFISVVSHELRTPLTSMQAALSLLSEKIIDPNSPEGEAT-IQIATEG 1307

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               L+ L+N+ILDL R+E+G+  L +S  ++ID++   I  +Q  A + NI +   +   
Sbjct: 1308 TDRLVRLVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCS- 1366

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIA 413
               + AD   + QV+ NLLSNA+KF+     + ++V      G        ++D G GI 
Sbjct: 1367 -FQIEADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIP 1425

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               + ++   FGQ   +    + G GLGL I +SI+  HGG+    S   +G      LP
Sbjct: 1426 SAHLDSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLP 1485

Query: 474  NT 475
              
Sbjct: 1486 KK 1487


>gi|295699600|ref|YP_003607493.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438813|gb|ADG17982.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 1193

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASM 256
              L     ++     + ++    LE  KS     +       +R E+ +  KS FLA+M
Sbjct: 443 QRRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQNDLAANAERLEQSSRYKSEFLANM 502

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN+ L  +++++    G L +E  + Y   IH S   LL LIN+ILDLS++EA
Sbjct: 503 SHELRTPLNSSLILAKLLQQNRSGNLTDEQVR-YAETIHASNSDLLVLINDILDLSKVEA 561

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
           G+  +    +S+   ++    M +  A  K++ +     P    +   D + + Q++ NL
Sbjct: 562 GQLTVEPETVSIEATLQSLDEMFRPIAATKHLRVAFDKLPGTPDTFVTDGQRLTQILRNL 621

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNAVKFT   G V + V           ++D+G GI   ++  +  +F Q   +     
Sbjct: 622 LSNAVKFT-EHGEVTLEVAKVEDNVLRFDVRDSGIGIPADKLDMIFDAFQQADGSTSRQY 680

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLGL I++      GG+  + S++ +G      LP 
Sbjct: 681 GGSGLGLSISREFSRLLGGRITVASEVGKGSVFSLWLPL 719


>gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
          Length = 338

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  F++++SHEL+TP+  + G  E +E E     N++  K++I    +    +  LIN
Sbjct: 116 QAKKDFVSNVSHELKTPIAVLKGVIETLEAE----ENDKGKKKFISMAQKRINQMNTLIN 171

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L ++R+E+   ++ ++ I+L   + +    L    QEKN++ + K++ +   ++ DEK
Sbjct: 172 DLLIIARLESKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNKVNENF-KIYGDEK 230

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +  ++ NL+ NA+K+    G+V V  G+       I +KD G GI +  +P +   F +
Sbjct: 231 KLSILLKNLIENAIKYNKENGKVEVK-GFLDKDYTVIEVKDTGIGIPKEALPLIFERFYR 289

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +      G GLGL I + I   H G+  + S L +G      LP 
Sbjct: 290 VDKSRSRNVGGTGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLPK 337


>gi|59711315|ref|YP_204091.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
 gi|59479416|gb|AAW85203.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
          Length = 744

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 17/327 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L      S       L   A++   + +  +   L + L +   ++ +  +S  +     
Sbjct: 273 LEQRFIYSVVLSFFVLIAIAVLIRGLFEHKILLSLNSLLKYTNTVSKNETRSEYQGCGIL 332

Query: 219 AEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            E D +  +LE   S   E +       + AE+    KS FLA MSHE+RTPLN ILG S
Sbjct: 333 -EFDQIGEKLEQTFSELIEAKEDSYKAQRAAEKLAQVKSDFLARMSHEIRTPLNGILGIS 391

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++   +        ++ +  +H+ G+HLL ++N+ILD S+IE  + +++ +   L D+
Sbjct: 392 SLLKSSNLTR----EQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDV 447

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     +     + KN+    +   +    + +D+  + Q++ NLLSNA KFT   G+V 
Sbjct: 448 LENINAIYFPLCKNKNVLFSIENHVNPDVFINSDQVRLTQILFNLLSNAAKFTEK-GKVK 506

Query: 391 VTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +T+        Y    S+ D G GI   E   +   F Q   +      G GLGL I + 
Sbjct: 507 LTLSLNKHNSDYYLQFSVDDTGVGICAEEQTRMFEPFEQSGFSESRKFGGSGLGLAIVKQ 566

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           ++    G+  I S L  G     ++P 
Sbjct: 567 LLDLLKGKITINSTLGVGSTFSVLIPV 593


>gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
 gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
          Length = 857

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G++ + +S   L ++V     + +    +K IE+  + + + ++ V +D+  + Q++ NL
Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSATLVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
               G GLGL I  S++    GQ  + S+   G      LP   V +   P+ 
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715


>gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 785

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++          
Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDLS+IEAG  E     ++L +I R    + + R Q
Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEICRNIYQIHKDRVQ 517

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +          +  D   + QVI N L+NA KFT   G +       + +     
Sbjct: 518 E-GVTLILDNQDEDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VNNQCIRFY 574

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA  ++  +   F +      S  QG GLGL I + I+   GG+  + S++ +
Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGVTSEIGK 630

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 631 GSTFYFTIP 639


>gi|153832905|ref|ZP_01985572.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
 gi|148870828|gb|EDL69727.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
          Length = 859

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+   A++ FLA MSHE+RTP+N ILG +++++       + +  K  I  +  SG
Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----DTQEQKNQIDVLCHSG 528

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +     K +E+  + +   
Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDP 588

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SNAVKFT   G + +                + + D G GI
Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPT-GSIRLHAELEQFYGAENSVLVVELTDTGIGI 647

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I ++++    G   +RS    G   +  L
Sbjct: 648 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGVGTTFVITL 707

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 708 PVKDRERVLRPL 719


>gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002]
          Length = 1430

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 147/281 (52%), Gaps = 22/281 (7%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            + + A    +  ++ AE  N AK++FL SMSHELRTPLNA+LGF++++E     P  +  
Sbjct: 1082 QRQQANKQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMER---SPDLSTD 1138

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++EY+  IHRSG+HLL L+N+IL+L++ E G  +L+ +  +L D++ +   M  L  Q K
Sbjct: 1139 HQEYLSIIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQHK 1198

Query: 347  NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYI 403
            NI++    D  +   + AD+  +  V+L+LL+NA+KFT   G V +TV   +        
Sbjct: 1199 NIQLDIHWDEQVPRYINADQAKLHSVLLHLLNNALKFTDS-GCVQLTVKTLAQNPLRLRF 1257

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            S+ D G GIAE +   +  +F +   A     QG GLGL ++Q  +   GG+ ++ S+  
Sbjct: 1258 SVTDTGIGIAETDFTRLFDNFVKLE-AGDRMGQGSGLGLALSQKFVNLMGGEIVVSSQPG 1316

Query: 464  EGVEVIAIL--------------PNTRVLNFIPEDNHESTQ 490
             G      L              P       +P    E+ Q
Sbjct: 1317 VGSCFSFELTGATPANPMHLALYPPQARDEQLPALTPEALQ 1357


>gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 9/322 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V     P VV ++ Q I            +     +F   +     +   + L      D
Sbjct: 194 VLDYTSPRVVPMARQLIEERWAETYESEMLRRDGTTFPAIVRGRDQRFGGRELRLTTILD 253

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + ++      +  AE    AKS FL+SMSHELRTPLNAILGF++++E++     
Sbjct: 254 --ITRQKESEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMDDGLST 311

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +     + I +I ++G HLL LINE+LDL+ IE+G+  LS   + +  ++R+C  ++Q  
Sbjct: 312 D---QLDSIAEILKAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQPL 368

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  + I++  +I P  ++  AD + ++Q++LNLLSN +K+    G V V V    G    
Sbjct: 369 ATSREIDLHLEI-PERAAACADNQRLKQIVLNLLSNGIKYNHPSGEVRVIVEP-DGSRLR 426

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I++ D G GI    +  +   F +   A  ++ +G G+GL I + +    GG+  + S+ 
Sbjct: 427 IAVADTGAGICAERLGELFQPFSRL-GADHASVEGTGIGLVITRKLTEAMGGRIGVESEP 485

Query: 463 REGVEVIAILPNTRVLNFIPED 484
            +G      LP  + L+  P  
Sbjct: 486 GKGSRFWVELPLAQ-LSSQPAP 506


>gi|71909432|ref|YP_287019.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71849053|gb|AAZ48549.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 759

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 18/333 (5%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH--LFK 209
           +A+   ++      +   +        I    ++   LA   A        +     L +
Sbjct: 279 AAIDRQLVRTIAVSAALMLGFLCLAWFIADRWLVKPILAVATAARRLRSGDLDARTGLRR 338

Query: 210 SNVKILSCQAEKDDLIAEL-------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           SN ++       D +  +L              +  +  AE  + AKS FLA+MSHE+RT
Sbjct: 339 SNDELGELLEAFDHMAEDLAESDRNLRRQAVALERAKGDAEAASAAKSTFLANMSHEIRT 398

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN ILG + +I    +     +   + +  +  S +HLLN+IN IL+LS+IEAG++ L 
Sbjct: 399 PLNGILGMAHLIRRGGL----TDEQAKRMDTLQVSSEHLLNIINTILELSKIEAGKFVLE 454

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           E+++ +  ++     +LQ R Q K++ +  ++    +++  D   ++Q +LN   NAVKF
Sbjct: 455 ETSVRIETLIANIASILQDRIQAKHLVLRTEVGALPANLLGDATRIQQALLNYAGNAVKF 514

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + + V               ++D G GIA   +P + T+F Q          G 
Sbjct: 515 TET-GSIALRVLPLEEDADSVLIRFEVQDTGIGIAPEVMPKLFTAFEQADATSTRKYGGT 573

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GLGL I Q I    GG   + S L  G      
Sbjct: 574 GLGLAITQKIAKLMGGDAGVESTLGVGSTFWFS 606


>gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 873

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VAL +Q++ S   + + +     +   ++  +           L      +  I +   
Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +        ++++   AKS FLA+MSHE+RTP+NAI+G SE++        N    +E 
Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H+S  +L+ +IN+ILD S++EAG+  L E    L  +V  C  +   +A +KN+++
Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +  ++ + V  D+  + Q++LNL+ NAVKFT   G V + V  +       S+ D G
Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  +  ++  F Q   +     +G GLGL I++ +++ + G+  +RS    G    
Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNGSCFS 590

Query: 470 AI--LPNTRVLNFIPED 484
               LP     +  P +
Sbjct: 591 FSLQLPKRSQPHSEPVE 607


>gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 598

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        + E   +++  +      ++
Sbjct: 349 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPKFLKVVQDETDRMI 406

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356
            +IN++L LSR++AG  +L+   +++ ++    +    +  +++         I +    
Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   +
Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 525

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 526 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582


>gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+ ++SHEL+TPL +I GF E ++   +   + +    ++  I     
Sbjct: 356 RRLE---KMRSDFVTNVSHELKTPLTSINGFVETLKSGAV--EDRDVAMRFLDIIEIETD 410

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE+   +   + I   D + E +  +   A  K IE+F  ID +L 
Sbjct: 411 RLKRLINDILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADSKEIELFTDIDSALP 470

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           S++ +    +Q+++NLL N++K+T IGG+V +T  +T      + +KD G GI + ++P 
Sbjct: 471 SIYGNRDWFKQIVINLLDNSIKYTPIGGKVELTA-YTKDNNIVLHVKDTGIGIPKKDLPR 529

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   A      G GLGL I + I+ +  G+  + S+   G E I  +P
Sbjct: 530 LFERFYRVDKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583


>gi|225027633|ref|ZP_03716825.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353]
 gi|224955042|gb|EEG36251.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353]
          Length = 606

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 139/303 (45%), Gaps = 18/303 (5%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           ++   V  I    +      FF  + +      + IL                + L  + 
Sbjct: 164 VLWQPVFYIVPFFIGIFLQCFFNTMPWANTSLTITILLIFVNN---------QQRLLQKK 214

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + AE    AKS FL+ MSH++RTP+N ++G  ++ +     P   E     +  +  + 
Sbjct: 215 TQDAEAAVRAKSEFLSHMSHDIRTPINGMMGMLDIAQAHLNNP---EKMDLCLSKMRGAA 271

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-- 356
             LL+LIN++LD+S+IE G  +L E    +I ++   + + ++ A EK++ I Q I+   
Sbjct: 272 DQLLSLINDVLDMSKIETGSIQLVEEPFDMIRLLNGTLAVQEIIASEKSLTIEQDIEGAI 331

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGI 412
               V      +R +++N++SNA+K+T  GG + V+    S  G+Y+     + D G G+
Sbjct: 332 EHPCVCGSPNYVRSILVNIISNAIKYTNPGGDIFVSARELSCDGEYVKFEFIVSDTGIGM 391

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +E     +   F Q     +S+ QG GLG+ I ++++    G   + +K  EG      L
Sbjct: 392 SEEFAEHIFEPFTQEHAENRSSYQGTGLGMSIVKNLINKMKGTITLETKQGEGSTFTITL 451

Query: 473 PNT 475
           P  
Sbjct: 452 PVK 454


>gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
 gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
          Length = 391

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +            +   + A+      +++AE+ +++KS FLA+MSHE+RTPLNAI GF+
Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+          E   +Y   I  +   L+ L+N+ILD+S+IEAG  E  ++ + +  +
Sbjct: 190 EVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQL 245

Query: 332 VRECIIMLQLRAQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           + +   + Q+R  +    I+I  +   S   +  D   + QV+ N   NA+KFT  G   
Sbjct: 246 LSDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHKGS-- 303

Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +G+ +     Y  +KD G GI   ++P V   F +        ++G GLGL I+Q+I
Sbjct: 304 -IRLGYEARDTELYFYVKDTGTGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A  GGQ    S   EG      +P
Sbjct: 359 VAKLGGQIGANSVEGEGSTFWFTIP 383


>gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 908

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 10/247 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E + +AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   +    +
Sbjct: 530 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  + + LL LIN+ILDLS+IE+G  E      +L  +  E   M+Q +    ++
Sbjct: 586 EYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITNPDV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E           ++ D   ++QV +N L+NAVK T   G + +           I ++D+
Sbjct: 646 EFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCT-KSGYIKMGYSIEREG-IRIYVEDS 703

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E     V   F +         QG GLGL I+++I+   GG+    S    G   
Sbjct: 704 GVGIPEELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTF 759

Query: 469 IAILPNT 475
            A +P  
Sbjct: 760 WAWIPCE 766


>gi|332527416|ref|ZP_08403471.1| PAS protein [Rubrivivax benzoatilyticus JA2]
 gi|332111826|gb|EGJ11804.1| PAS protein [Rubrivivax benzoatilyticus JA2]
          Length = 674

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETR-KRAEEENLAK 249
                      +    + + +L    E+  ++AELE  +    +  E R ++AE  N AK
Sbjct: 235 VWMELRAARFEHRGRPAVLGLLRDMTERRRIVAELERHRHHLEVLVEERTRKAEAANRAK 294

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNAI G   +++ E      +   +  +  I R+  HLL+L+N++L
Sbjct: 295 SAFLANMSHEIRTPLNAITGMVHLLQRE-----ASPQQQRSLSVIARAVDHLLSLVNDVL 349

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLS+IE+G+  L     +L +++     ++   A EK++ +      + + +  D   + 
Sbjct: 350 DLSKIESGKLTLETVDFALDEVLERARGLVADLAAEKHLTLSVDNRAAGARLRGDPTRLA 409

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFG 425
           Q++LNLL NAVKFT   G + +T    +         + + D G GI    +  +   F 
Sbjct: 410 QLLLNLLGNAVKFTDR-GEIRLTCAVDASEAAAPRLLLEVSDTGIGIEAARLAQLFAPFQ 468

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           Q   +      G GLGL I + ++    G+  +RS   +G      +   R  +
Sbjct: 469 QADSSTTRRFGGTGLGLAICRHLVELMHGRIDVRSVPGQGSTFCIEVRLQRAQD 522


>gi|329926653|ref|ZP_08281064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328939062|gb|EGG35427.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1017

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 204/484 (42%), Gaps = 28/484 (5%)

Query: 34  DREIITLHVESLFRVSPILPLFVLL-VANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90
            +++       L R S ++   +++ V +I  +  +  +     + L  + +    + +G
Sbjct: 167 AKQLQQEKSVELVRDSLVIGSLLVIGVYHIILYVLRRNDVTPLYFGLFCMCIAVRTMLVG 226

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144
            + +   I     +VW   +    I +G  + +  +                     S T
Sbjct: 227 SRFILE-IFPAFSWVWFAKVSYLTIYVGELFLISYIYHLFPQFLSRKVWRLTQFFTISLT 285

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           LL+  +   + ++ L      S   V+ A+     ++    + ++  +L  +L F T + 
Sbjct: 286 LLVLTTDIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 345

Query: 205 YHLFK----SNVKILSCQA------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L +    +   +L          +   L  +   A    +   +R    +  K  FLA
Sbjct: 346 DTLNRKGVFTTPALLQFGVLGFVFLQALLLSMKSSRAFFQVERLSERLLTLDKLKDEFLA 405

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
             SHELRTPL+ I+G ++ +   + G L +    + +  +  SGQ L +L+N+ILD S++
Sbjct: 406 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVI-DLLRLMKVSGQRLAHLVNDILDFSKL 464

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           +     L    ++L   V   + +L   A++K + +  ++   +  V ADE  ++Q++ N
Sbjct: 465 KHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDM-YVMADENRLQQILHN 523

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+ +T   G V VT     G+   I I D+G GIAE ++  +  SF Q +   +S 
Sbjct: 524 LIGNAIAYTET-GAVTVTAKRLQGQ-LSIQITDSGIGIAEADLDRIFESFEQINPLDRSQ 581

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHESTQ 490
           + G G+GL I + ++  H G+  + S L EG      LP           +P  ++  T+
Sbjct: 582 QGGTGIGLSITKKLVELHDGRIGVTSGLGEGSTFSFTLPMAGEGKPKSPPLPVADYIPTE 641

Query: 491 YKCY 494
              +
Sbjct: 642 SFSH 645


>gi|194291671|ref|YP_002007578.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193225575|emb|CAQ71521.1| putative sensor hybrid histidine kinase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 649

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 167/426 (39%), Gaps = 14/426 (3%)

Query: 58  LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117
             A      T   +    +++  AV    L+    +     +           +  Q   
Sbjct: 22  ASAQAPAPDTHAHLLGWCTVVLCAVTPCLLAWIIALYREVRRRRAAETALQDCVAIQ--T 79

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST- 176
            L   +   V         +   +S   L+  +  +L    L   +        +A    
Sbjct: 80  ALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAHPLATDMAELAR 139

Query: 177 ---QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
              Q I     L       L             L  ++  +        DL    E+  +
Sbjct: 140 DYRQVIADGAPLHADRCLRLGDRTLHVLNWLTPLRGADGTVKGLAGGCVDLTERHEML-A 198

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + +  AE  N AKS FLAS+SHE+RTP+NAI G  E+   +++ P   +  +  +  
Sbjct: 199 ELAQAKTEAEAANRAKSAFLASVSHEIRTPMNAITGMLELTLAQSLLP---DEQRLQLLT 255

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            H+S   LL LI++ILDLS++EAG++ +  +  SL  +V + +++    A +K + +   
Sbjct: 256 AHKSAVGLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPGAAQKGLPLTSG 315

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQYISIKDNG 409
           +  +L+ +   D    RQ++ NL+SNAV+FT  G   V +    T        +++ D G
Sbjct: 316 VSAALAPLHQVDALRFRQILANLVSNAVRFTDSGTVHVRLDAQSTGDGIQDVILTVSDTG 375

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI       +   F Q     +S   G GLGL I + +    GG+  + S+   G  V+
Sbjct: 376 IGIPFEAQARLFQPFEQVHGCARSHAGGTGLGLAICRRLAKAMGGRITLTSQPGRGTRVV 435

Query: 470 AILPNT 475
             LP  
Sbjct: 436 VSLPLA 441


>gi|330830927|ref|YP_004393879.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565]
 gi|328806063|gb|AEB51262.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565]
          Length = 941

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 24/348 (6%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
             +   +      +S          + I S    +++  G                 +  
Sbjct: 350 GRIVWPLQRAVAGMSRLARGDLAPLEPIASTGRDELAELGRALQVFRDNAVELGRYQREL 409

Query: 212 VKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
              +  +     L    E      +   + R  AE+ N AKS FLA+MSHE+RTP+N IL
Sbjct: 410 ESRVEERT--GQLSHANERLNEEVEKQRQARAEAEQANRAKSVFLATMSHEIRTPMNGIL 467

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G   ++E   +    ++T + Y+  I  SG+ LL ++N+ILD S+IEAG  E       L
Sbjct: 468 GGLTLLEDTHL----SDTQQRYLAAIEHSGESLLEILNDILDYSKIEAGHVEARREPFPL 523

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +V E   + + +A+ K + +  +  P L   V  D   +RQV+ NLL NAVKFTA  G
Sbjct: 524 FQLVDELGALFRPKAEAKGVTLALEYAPWLAPVVEGDLGKLRQVLGNLLGNAVKFTAR-G 582

Query: 388 RVHVTV------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS---AEQGV 438
           ++ +TV      G  +       ++D GPGI   E   V  +F Q     K     + G 
Sbjct: 583 QITLTVAPLVCHGPCAEPCIRFVVRDTGPGIPADEQEAVFEAFRQ----RKRDIGHQGGT 638

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GLGL I++ ++   GG+ ++ S+  +G E    LP  R    +P +  
Sbjct: 639 GLGLAISRKLVTAMGGELILASEPGKGCEFSFSLPLQRSSAQLPAEAQ 686


>gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
 gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
          Length = 857

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G++ + +S   L ++V     + +    +K IE+  + + + ++ V +D+  + Q++ NL
Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSATLVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
               G GLGL I  S++    GQ  + S+   G      LP   V +   P+ 
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715


>gi|170692375|ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142805|gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 657

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 11/279 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +E++ +  E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+E
Sbjct: 259 DIHSEREAM-QERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE 317

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              M P   +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + +++   
Sbjct: 318 ---MIPDLPDQARSSVRMIRRNIELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + + +   Q K  ++    D +   V AD   ++Q++ NL+ NA KFT  GG ++V    
Sbjct: 375 LELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  IS++D G GI   +I  +  +F QG   +     G+GLGL I +++   HGG 
Sbjct: 434 DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493

Query: 456 FLIRSK-LREGVEVIAIL-----PNTRVLNFIPEDNHES 488
              +S     G      L     P       +P+  H +
Sbjct: 494 VTAQSPGPHCGATFTITLPTAAAPARTSQPVLPDPVHPA 532


>gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1814

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 29/299 (9%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256
               L  SN ++    A       ++EV  +  +E R+  EE           KS FLA+M
Sbjct: 1275 QKALQASNAELEEKAALLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANM 1334

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  ++++     G L+     E+   IH +G  LL LIN+ILDLS++EA
Sbjct: 1335 SHELRTPLNSLLILAKLLADNADGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEA 1393

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            G+ ++S + I+LI +V       +    EK ++   ++ P L  ++  DE+ + QV+ NL
Sbjct: 1394 GKMDVSPTRIALIQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNL 1453

Query: 376  LSNAVKFTAIGG-RVHVT-------------------VGWTSGRGQYISIKDNGPGIAEG 415
            LSNAVKFT  G   + +                    +          S+ D G GIA  
Sbjct: 1454 LSNAVKFTDTGAVELVIRPAGADVPDGIREQLLEHGALRDPDAEMIAFSVTDTGIGIASS 1513

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +  +F Q          G GLGL I++ I    GG+    S+   G      LP 
Sbjct: 1514 KMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1572


>gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
 gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
          Length = 942

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 11/272 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
               I+   A K    A  + A+ +++   + A+  N AK+ FL+ MSH++RTP+NAI+G
Sbjct: 529 MAATIVRLSARKKAQKAAQKKAEEMAELA-EHAQAANKAKTAFLSHMSHDMRTPMNAIIG 587

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F+ +     M    ++  K  +  I  S +HLL+LIN++LDL+RIE+G+   +     + 
Sbjct: 588 FTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDVLDLTRIESGKVNYNPVPADVK 643

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           +I    + + +     ++I    + + + + +V AD   +R V++N+LSNAVKFT  GG 
Sbjct: 644 NITDSALDITKGFLMNRDINFKIQREEAKIPNVLADPARLRDVLVNILSNAVKFTPDGGT 703

Query: 389 VHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           +          G         I D G G++E     V   F Q    +++   GVGLG+ 
Sbjct: 704 ITFEARCQEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQEDSGVRTQYHGVGLGMA 763

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I +  +   GG   + SK  EG      +P  
Sbjct: 764 IVKKYVDMMGGTISVHSKKHEGTTFTVDIPLE 795


>gi|163939207|ref|YP_001644091.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861404|gb|ABY42463.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 466

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L + + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L+  EKN+ I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 444 ESEKGKGTTVSIKL 457


>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
 gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
          Length = 1128

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 10/378 (2%)

Query: 118 GLCWTLLTLVEPGTWTP--EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
           G+ W L+  V           L       +L A+ +  +++  L   +      + +  +
Sbjct: 332 GIDWALVVEVPESVAFARVHQLETVFIFAMLTAILLVVMASHYLSNFITAPL--LKLTWA 389

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  +    +       +         + +S  + +    +++    ELE    L 
Sbjct: 390 AEKVSAGDLDADMINTQRKDEIGRLAVSFERMQRSIREKILLIKDQN---EELESNLKLI 446

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  +  +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+  E +K  +  I 
Sbjct: 447 QKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITAE-HKYQLDIII 505

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++  SA+ L    R  + +       K I I  ++ 
Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLLGNKPIRIINQVP 565

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   
Sbjct: 566 SEPVWVSADPQRLEQVLYNLVGNAIKYTSE-GKIVISANVVDDQ-IRVQVVDTGQGIPAD 623

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 624 QLEHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPVA 683

Query: 476 RVLNFIPEDNHESTQYKC 493
                   +++E+  +K 
Sbjct: 684 SEQQIQDANHYEAPHFKA 701


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +S F+A++SHELRTP+  + G+SE +  +     + E   E    I+   + +  
Sbjct: 362 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDQEERNEITKIIYDESKRMGR 420

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362
           L+ ++LDL+R+E+G   L +  + +              A+EK++ +  + +    + + 
Sbjct: 421 LVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESEFNDEAMIN 480

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ NL+ NA++ T   G V V V         IS++D G GI + ++P V  
Sbjct: 481 IDEDRIEQVLTNLVDNALRHTDE-GSVSVKVEQEP-TFAKISVQDTGHGIPQEDLPYVFE 538

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   ++ G GLGL IA++I+  H G  ++ S L+EG      LP
Sbjct: 539 RFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 409

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 128/251 (50%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + L    ++ A      KS F+A+MSHE+RTPLNAI+GFS ++        ++
Sbjct: 166 ITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLAST----DDD 221

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  +  +   LL ++ ++LDLS+IE+G  +   S   + D++     +L++R +
Sbjct: 222 AEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHGILEIRLK 281

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + +I++  +       ++++++ + Q++ NL+ NA+KFT   G +            Y 
Sbjct: 282 DKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFT-QNGEIRFGCRPHGETDVYF 340

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  GE   +   F +          G GLGL ++Q+I+ + GG+  + S++ 
Sbjct: 341 YVSDTGIGIPVGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQSLGGEIGVESEVT 396

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 397 KGSTFWFTLPL 407


>gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 633

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLASMSHELRTPLN ILG S+++  +       +  ++ +  I++SG HLL LI +IL
Sbjct: 390 TAFLASMSHELRTPLNGILGLSQLLLEDAQEAGYLDFIED-LQQINQSGLHLLGLIEDIL 448

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S+IEAG+  L      +  ++ E +  +Q   ++    +  K    L  + AD K ++
Sbjct: 449 DISKIEAGKMILYPETFDVSLLITEVVNTIQPLIKKNGNSLQIKFSNPLGPMVADRKRVK 508

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEI 417
           Q+++NLLSNA KFT   G++ +TV              +       S+ D G G+ + +I
Sbjct: 509 QILINLLSNAAKFTEQ-GKILLTVNRQVFNETPQPSINSPSTWLVFSVIDTGIGMTQEQI 567

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F Q   +      G GLGL I Q      GG   + S++  G      LP 
Sbjct: 568 SKIFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGGYITVESQVNVGSAFTVGLPA 624


>gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
 gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
          Length = 1061

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 23/317 (7%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              +     L  Q +    +    L  +   A+  F        +   ++ + Q       
Sbjct: 722  GIWSASQTLRFQVLPPWWLSPWGLVALGLLAVCLFAAAVLLYRRRLRRLNALQLAVHK-- 779

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                         ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 780  -------------QEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDN---- 822

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE
Sbjct: 823  KQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQE 882

Query: 346  KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            + +    ++      +   D   +RQ++LNLLSNA+KFT   G V + +      +G   
Sbjct: 883  RGLRFSLEVGLLGDITASGDVTRIRQILLNLLSNAIKFTER-GVVGLKLTTLGSYQGLRF 941

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GG   + S+L
Sbjct: 942  EVADTGPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRL 1001

Query: 463  REGVEVIAILPNTRVLN 479
              G   +  LP   V +
Sbjct: 1002 GAGTRFVVDLPLRWVAS 1018


>gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 758

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 6/239 (2%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           +  + A   + AK  FL++MSHE+RTPLNAILGF  ++  ET     N  Y++Y+  I  
Sbjct: 142 QKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDET----TNPRYQQYLDIISN 197

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG++LL++IN+ILD S++ +G + +     ++ D +   + +    A  KNI +   IDP
Sbjct: 198 SGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFIDP 257

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           +++  + AD   ++Q++ N LSNA+KF+   G +HV           +S++D G GI   
Sbjct: 258 TIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEA-RCDEGILSLSVRDQGIGIVLA 316

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +  +F Q          G GLGL I + +  + GG   + S + +G      +P 
Sbjct: 317 DQERIFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIPV 375


>gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115]
 gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 1644

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 148/369 (40%), Gaps = 27/369 (7%)

Query: 129  PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF---PVVVALSTQAIMSMHVL 185
             G  TP  + +          ++  L++F    A  LSF       V +    I +    
Sbjct: 818  LGAATPNSIVVLPVVFEGQTKAVIELASFEPFSATHLSFLEQFTESVGIVLNTIQATMRT 877

Query: 186  DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE- 244
            +  L    + A          L ++N ++        D   E+E      +  R   EE 
Sbjct: 878  ETLLRQSQSMAQ-ELQSQQEELRQTNEELEQKARLLADQNREVEDKNREVESARHALEEK 936

Query: 245  -ENLA-----KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               LA     KS FLA+MSHELRTPLN++L  +  +     G L +   + Y   I+ +G
Sbjct: 937  AAQLALTSKYKSEFLANMSHELRTPLNSLLLLAHQLRDNPDGNLTD-QQQAYAKTIYAAG 995

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
              LL+LIN+ILDLS+IE+G      + + L  +           A +K + +       L
Sbjct: 996  NDLLSLINDILDLSKIESGTVSADLTEVPLRSVRDAVDTTFAHVASDKGVSLQLNFSADL 1055

Query: 359  S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------------WTSGRGQYIS 404
              ++  DEK + Q++ NLLSNA KFT   G V + V                +       
Sbjct: 1056 PPTLLTDEKRLLQILKNLLSNAFKFTEK-GSVTLQVEPALSGWSTEHSTLRRAPSVVAFR 1114

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIA  +   +  +F Q          G GLGL I++ +    GG+  ++S    
Sbjct: 1115 VSDTGIGIAADKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGV 1174

Query: 465  GVEVIAILP 473
            G      LP
Sbjct: 1175 GSVFTLYLP 1183


>gi|84387569|ref|ZP_00990587.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84377617|gb|EAP94482.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 856

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ------AEKDDLIAEL 228
             Q      + +I +    +        I   +F+ N+  +  +        +   I +L
Sbjct: 399 VAQEFEHRMLPNIHMVVQGSKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDITKL 458

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  +D  R+ AE     ++ FLA MSHE+RTPLN ILG S++++        +E  +
Sbjct: 459 IEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKRSIH----SEDNR 514

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  +  S +HLL ++N+ILD S+IE G++ + +    L ++V     + +    +K+I
Sbjct: 515 EQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELVNTLDSIYRPLCGDKSI 574

Query: 349 EI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQY 402
                        +  D+  + Q++ NL+SNA+KFT  GG + V+               
Sbjct: 575 AFTIVNHLADDIEINTDQVRLNQIMFNLVSNALKFTHQGG-ISVSFELESIFNSDHASLI 633

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + +KD+G GI E +I  V   F Q          G GLGL I ++++    G   +RS++
Sbjct: 634 VRVKDSGIGIDESKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVRSEI 693

Query: 463 REGVEVIAILPNT 475
            +G E I  +P  
Sbjct: 694 NQGSEFIIEIPVE 706


>gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces
            ghanaensis ATCC 14672]
          Length = 1332

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 152/387 (39%), Gaps = 35/387 (9%)

Query: 123  LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L       +     +       L I +    L    L      +             + +
Sbjct: 623  LPPDYVTISSGLGRVVPTALVLLPIVVEGQVLGVIELASVTPFTQIHQDFLAQLMETVGV 682

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------- 235
            +V  I         L     +T  L + + ++ + Q E     AELE   +L        
Sbjct: 683  NVSTIVANARTDELLVESQRLTAELQQRSAELQTQQEELQHSNAELEEKAALLATQNRDI 742

Query: 236  -------DETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                   ++ R+  E         +  KS FLA+MSHELRTPLN+ L     +  +    
Sbjct: 743  EAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNS-LLILAQLLAQNPSR 801

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +    EY   IH +G  LL LIN+ILDLS++EAG+ ++S   ++L  ++       + 
Sbjct: 802  NLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRP 861

Query: 342  RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               +KN++      P   + +  D+  +RQV+ NLLSNAVKFT  GG V + +   +   
Sbjct: 862  MTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELRIEPATDDE 920

Query: 401  Q-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                           +KD G GI E  + ++  +F Q          G GLGL I + I 
Sbjct: 921  VPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIA 980

Query: 450  ANHGGQFLIRSKLREGVEVIAILPNTR 476
               GG   + S   +G      LP TR
Sbjct: 981  HLLGGAVTVDSVAGQGSTFTLFLPVTR 1007


>gi|116694038|ref|YP_728249.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528537|emb|CAJ94884.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a purine-cytosine permease domain
           [Ralstonia eutropha H16]
          Length = 1111

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 13/335 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +      +  +   L   +           +  A      + +    +  A +     ++
Sbjct: 575 FGLMLAGMVFAFGTLLWLLYTQEQLSGPVVLAAAPRASLFLKIGAGLMLFAAVA----AW 630

Query: 200 FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  +         +    Q +     I       +L    ++ AE+ NLAKSRF+  MSH
Sbjct: 631 WLVLANESRAVAQEESERQNQLLQKEIDAHRRTDALLQSAKEVAEQANLAKSRFITGMSH 690

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+R  LN+ILG+S+++      P      +E +  I R+G+HL +L++ +L+LSRIEAG+
Sbjct: 691 EMRAGLNSILGYSQLLLRT---PALPAACREDVRTIGRAGEHLSSLVDGLLELSRIEAGK 747

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L + A++L D++ E + M +  A  + +    ++   L   V  D K +RQ+I+NL++
Sbjct: 748 LRLEQDAVALEDLLDELVRMFRPLAAVRGLAFHYRVTGKLPAHVHGDAKRLRQIIINLVT 807

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT   G V +TV         I++ D GPGIA  +   +   F + +       +G
Sbjct: 808 NAIKFT-EHGDVSLTVRHQRE-LAMITVSDTGPGIAAEDQARIFDPFERATPHDDR--EG 863

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +GLGL I + +    GG   +RS   +G E    L
Sbjct: 864 IGLGLAIVRLLADLMGGDIRVRSAPGQGSEFSVRL 898


>gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 554

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE    EL    ++L D+ R  I  +  +A +KNI I  +I+  +  V A E  +
Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLL+NA+ ++   G ++V V           ++D G GI   +   +   F +  
Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S++ +G     IL
Sbjct: 506 KARSRDSGGTGLGLSITKHIVKAHQGNIEVNSQVGKGSTFKVIL 549


>gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 701

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 29/285 (10%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDET--RKRAEEE------------NLAKSRFLASMSHEL 260
           L   ++    I E + A+   ++   R++A               N +K  FLA +SHEL
Sbjct: 244 LRGFSKIMQDITERKQAEEEKEQLLLREQAARAVSEAAQSAAEAANRSKDEFLAIVSHEL 303

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+ AI+G++ +++   +   +       +  I R+    + LI ++LD+SRI  G   
Sbjct: 304 RTPMTAIIGWAGMLQTGVL---DEAKATLALEIIERNANLQMQLIEDLLDISRIVRGELS 360

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           LS   + L++++   I ++Q  A  K+I++   +D S+  +W D   ++QV+LNLL+NA+
Sbjct: 361 LSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKIWGDSDRLQQVVLNLLTNAI 420

Query: 381 KFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           KFT  GGRV V +    G               I + D G GI+   +P V   F Q   
Sbjct: 421 KFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGKGISPDFLPHVFERFWQADS 480

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
               + +G+GLGL IA  ++  HGG    +S+ + +G      LP
Sbjct: 481 THTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFTVKLP 525


>gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 761

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 12/298 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 337 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 396

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 397 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 451

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L    +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 452 VSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 511

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + +  T+ +   +S+ D G GIA   I  +   F +       + +G
Sbjct: 512 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 568

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNHESTQYK 492
            GLGL +++S++    G   +++   EG   I  LP  RV      +P     S + K
Sbjct: 569 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPFVRVQPPAAKLPRQAETSLEIK 626


>gi|302381238|ref|YP_003817061.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191866|gb|ADK99437.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 585

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 165/435 (37%), Gaps = 26/435 (5%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           S  R   +     +++  +    +      +W  I          +G K   +     E 
Sbjct: 15  SRSRQWTVRIGMAVVIGAVFCNVSSVTFSLVWLAIYALTQVVESQMGPKGTLAAWLGAET 74

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
           Y      L       + + L   +   + T   L       L  A   + + +       
Sbjct: 75  YP--PVCLALVFINNVIFGLGGAMPMLSGTTMGLICGPLL-LGGAFLNAVMVSPGSRQMT 131

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F +  P V+ L+   + ++     +L     T  +             +           
Sbjct: 132 FSAALPPVLYLTLVPVGAIAHGFGALEAFQITLGALLLPAAGLATWMKLSSTVL------ 185

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
                       +  +  AE+ N AKS FLA+MSHE+RTPLN +LG ++ +  + +    
Sbjct: 186 ----------ALERAQTDAEDANRAKSDFLATMSHEIRTPLNGVLGMAQAMTADRLSV-- 233

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++ +  + +SG  LL +++++LDL++IEA + EL  +   L  +V +     +  A
Sbjct: 234 --RQRQRLDIVTQSGHALLTILSDVLDLAKIEARKVELETADFDLETLVEQSRETFRAVA 291

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             K +    +++P+ + +   D   +RQ++ NL+SNA+KFT   G + V           
Sbjct: 292 DAKGLSFDARVEPAAAGTWRGDTTRLRQILSNLISNAIKFTDA-GTISVVADAV-DGRLR 349

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D G G+   ++P +   F Q   +      G GLGL I   +    GG        
Sbjct: 350 VTVEDTGAGVTAEQLPLLFGKFVQADASTTRKHGGTGLGLSICMELAHLMGGSIEAERIE 409

Query: 463 REGVEVIAILPNTRV 477
             G+      P  RV
Sbjct: 410 PHGLRFTFEAPLERV 424


>gi|257486369|ref|ZP_05640410.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330987453|gb|EGH85556.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010647|gb|EGH90703.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 645

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
 gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
          Length = 1383

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 6/284 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           G  A  +         L +     L     E   LI+     ++      + AE  N AK
Sbjct: 289 GRPAGVIVLAAGAGRPLDEGYRTFLRLLGQETSALISRALTYRAQQRRAEELAE-LNRAK 347

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + F   +SHE RTPL  I+G  E +         ++  +E +  I  S   +  L++ +L
Sbjct: 348 TVFFTDISHEFRTPLTLIVGPLEELRSRLGPA--DQWVRENLEIIRHSALRMTRLVDTLL 405

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D +RIEAGR E       L     +   + +    +  + +     P    V+ D     
Sbjct: 406 DFARIEAGRMEARYQPTDLAVFTADLAGVFRAAVDKAGLRLEVDCPPLPEPVYVDRGMWE 465

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           +++LNLLSNA+KFT   G + V +         + + D G G++E ++P V   F +   
Sbjct: 466 KIVLNLLSNALKFTFE-GSITVRL-RAEDGQAVLRVSDTGVGMSEQDLPRVFERFQRVKA 523

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           A   + +G G+GL + + ++  HGG   + S L +G      LP
Sbjct: 524 AQTRSIEGSGIGLALVRELVHLHGGTIGVDSTLGKGTTFTIRLP 567


>gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 998

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                   + +S  + L         + E+ +A       ++RA+ E+  KS FLA+MSH
Sbjct: 285 LLIRAFNRMIRSFQRDLEKSERVKQALEEVSLANVE----KERAKNESRIKSSFLANMSH 340

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+NAILG + +     +    NE  K+Y+  I  SG +LL+L+N ILDLS+IE+  
Sbjct: 341 EIRTPMNAILGMTALTLKTDL----NEKQKDYLTKIQLSGDNLLHLLNSILDLSKIESDM 396

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-----IDPSLSSVWADEKGMRQVIL 373
           ++L +    L D++ E    L   A +KNI +        +  +L+ +  D   + Q++ 
Sbjct: 397 FKLEQRPFRLDDVLEEVFGTLGNSALDKNIRLLYTLQGKGLQSTLNRLVGDSLRVGQILK 456

Query: 374 NLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NL+ NA+KFT+ G   + V V            S+ D G G+++ ++  V   F Q   +
Sbjct: 457 NLIGNAIKFTSEGHINLTVKVLKQLDDQVTLQFSVSDTGIGMSKDQLQRVFDKFTQADSS 516

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                 G GLGL IA+ ++    G     S    G      L         P  N 
Sbjct: 517 TTRMFGGSGLGLSIAKELVHLMEGDIHAHSTPGRGSVFYFTLNLKTQEAEAPARNP 572


>gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 132/277 (47%), Gaps = 4/277 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L +    +     E+  +  E           R  AE+ N  K  FL  +SHELRTPL 
Sbjct: 172 QLIEVAQSLAGIAIERQLMDEERNQLLKNEHSARLEAEQLNQIKDEFLMMLSHELRTPLT 231

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILG+S++++   +   N     + +  I R+ +    L++++LD+SRI A +  L +  
Sbjct: 232 AILGWSQLLKKGLITQKN--KVDKALETIERNAKLESKLVDDLLDVSRILANKLILKKEP 289

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I L  I++  +  + L AQ K I I   I      VW D++ ++QV  +LLSNA+KFT  
Sbjct: 290 IDLEFIIKLTLDSILLTAQAKEITIKTLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGE 349

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG + +T+   + R + I I D G GI    +P V   F Q   + +    G+G+GL IA
Sbjct: 350 GGVITITLTQDNERAKII-IHDTGQGIKPELLPFVFKRFWQADSSSQRIAGGLGIGLSIA 408

Query: 446 QSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFI 481
             ++  H GQ    S    +G     ILP     N  
Sbjct: 409 HRLVELHNGQIQAESLGEEKGATFTVILPLQHSENPA 445


>gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 630

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E + +AE  + AKS F+A++SH+LRTP+N ILG +++  +        
Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I D+  S   LL L+ +ILD +R+E G+ EL  S  +L  +V   +     + Q
Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K I+I    D SL  S+ ++   +R++ LNL+ NAVKFT   G++ VTV     +    
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI + ++ T+   F + +    S  +G+GLGL I + ++ N GG+  + S 
Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSI 468

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG      +P        P +  E+
Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495


>gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 615

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 142/265 (53%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++        N+E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V   SG   YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHKGTVTIKSELGKGTEFIIKLPA 585


>gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
 gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
          Length = 618

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 10/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        + E   +++    +    ++ +IN+
Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMIND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360
           +L LSR++ G  ++    ++  D V   +    +          +K   I +++      
Sbjct: 434 LLSLSRMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 493

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  +      +SI D G GI   ++  +
Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 552

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLPYETMTEE 612


>gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
 gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
          Length = 621

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        + E   +++  +      ++
Sbjct: 372 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPQFLKVVQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356
            +IN++L LSR++AG  +L+   +++ ++    +    +  +++         I +    
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   +
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 548

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605


>gi|330888167|gb|EGH20828.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 645

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|160889665|ref|ZP_02070668.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492]
 gi|156860657|gb|EDO54088.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492]
          Length = 585

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  ELEV++    E + RAEE +  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 340 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 396

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILD+SR+EA R  LS  + +++ I ++ +  +  +
Sbjct: 397 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 455

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401
           A+    +   + +  +  +  D + ++QV++NLLSNA KFT   G + + +   T+    
Sbjct: 456 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 514

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI   +   V   F +         QG GLGL I +  +   GG+  I   
Sbjct: 515 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 570

Query: 462 LREGVEVIAILP 473
             +G   +   P
Sbjct: 571 YTDGARFMFTHP 582


>gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 655

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 11/303 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-LSCQAEKDDLIAELEVAKS 233
              + + +    + +  +    +++  ++  +  K+  +   + +  +D L +E+    +
Sbjct: 207 VASSRVGLGFTHLVIWLLGLAGIAWGNWLGANWAKARDQAQAALEQHRDQLESEIAERTA 266

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               +   AE  N AKS FLA+MSHE+RTPLNAI G   +I  E + P       E++  
Sbjct: 267 ALSRSMHAAEAANHAKSSFLANMSHEIRTPLNAITGVLHLIRREGLLPG----QAEHLDK 322

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  +G+HLL+LIN +LDLS+IEAG+ EL+   +S+  I+   + M   RA  K + +  +
Sbjct: 323 IDTAGRHLLDLINGVLDLSKIEAGKLELTSLPLSIPVIIGNLVSMQHERATAKQLRLETE 382

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDN 408
           IDP++   +  D   ++Q +LN +SNA+KFT   GRV + V               ++D 
Sbjct: 383 IDPAIPEHLVGDGVRLQQALLNYVSNALKFTDS-GRVLLRVRLIEAGSDDVLLRFEVEDT 441

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++ T+ + F Q   +      G GLGL I + I    GG     S+   G   
Sbjct: 442 GIGITGADMATLFSEFEQVDNSSTRRHGGTGLGLAITRKIAQLMGGDAGASSEPGHGSCF 501

Query: 469 IAI 471
              
Sbjct: 502 WFT 504


>gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
          Length = 880

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 382 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 437

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 555

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 556 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 615

Query: 469 IAILPN 474
              +P 
Sbjct: 616 TVRIPL 621


>gi|317478708|ref|ZP_07937862.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905138|gb|EFV26938.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 644

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  ELEV++    E + RAEE +  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 399 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 455

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILD+SR+EA R  LS  + +++ I ++ +  +  +
Sbjct: 456 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 514

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401
           A+    +   + +  +  +  D + ++QV++NLLSNA KFT   G + + +   T+    
Sbjct: 515 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 573

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI   +   V   F +         QG GLGL I +  +   GG+  I   
Sbjct: 574 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 629

Query: 462 LREGVEVIAILP 473
             +G   +   P
Sbjct: 630 YTDGARFMFTHP 641


>gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
 gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
          Length = 566

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F A++SHEL+TPL +I GF+E++E       N++  + + G I+   Q L+
Sbjct: 335 QRAEQVRRDFAANVSHELKTPLTSISGFAEMMENGM--ADNSQDVRRFAGRIYTQAQRLI 392

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L ++I+ LSRIE          + L  +    +  L+  A++K +EI     P+   V 
Sbjct: 393 ALTDDIIRLSRIERADLT-ENVPVELRALCDRAVETLRFTAEQKQVEIAVTGGPAP--VR 449

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D + + ++I NL+ NAVK+   GGRV V++         + + D G GI +     +  
Sbjct: 450 GDRQMLDELITNLMDNAVKYNRPGGRVDVSLS-VQDGLVCLRVADTGIGIPKEHQERIFE 508

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   +      G GLGL I + ++  HGG   + S   EG  V   LP 
Sbjct: 509 RFYRVDQSRSKQTGGTGLGLSIVKHVVERHGGSITLESVPGEGTAVTVRLPA 560


>gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 668

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 5/252 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++ A+      +++AE+ N AKS FL+SMSHELRTPLNAILG++++   E  G L+ 
Sbjct: 273 ITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPLNAILGYTQLF--EYDGNLSR 330

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E     I +I ++G+HLL LIN++LDL++IE+G+  +S   + +  +++EC   +Q +A 
Sbjct: 331 EQVTN-IREIRKAGEHLLQLINDVLDLAKIESGKMMVSLEPVLVSRVIKECFTFVQPQAD 389

Query: 345 EKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
              I ++    D   + V AD    +Q +LNLLSNA+K+  +GG V V +         I
Sbjct: 390 ALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYNIVGGEVEVRLDVQPMDQLRI 449

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D G GI       V   F + S A  S  +G G+GL I + ++    G     S   
Sbjct: 450 TVRDTGRGIPADRQHEVFQPFNRLS-AENSNIEGSGVGLVITKQLVEMMHGNLDFSSAEA 508

Query: 464 EGVEVIAILPNT 475
            G      LP  
Sbjct: 509 IGTSFWIDLPTA 520


>gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia
           stuttgartiensis]
          Length = 595

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E  N  K  F+A++SHELRTPL +I G+ E +         +      +  I +  Q
Sbjct: 355 RKLE--NTRK-EFVANVSHELRTPLTSIRGYVETLLENYAAGGGHTY--NSLKVIMKHTQ 409

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NLI +IL+LS++E    ++    +++ + + + +   +   +EK       I  +L 
Sbjct: 410 RLDNLIKDILELSKLETNELKMELHELNIYECIEDILHTYKEHCEEKKQSFRLHISQNLP 469

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +V ++E  +RQ++ NLL NA+K+T   G + +++   +     I + D G GI    IP 
Sbjct: 470 TVESNEYLLRQLLTNLLDNAIKYTHESGDIRLSISP-AEETIQIEVSDTGIGIPHEHIPR 528

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A      G GLGL I + I+  H G   ++S + +G     ILP  +   
Sbjct: 529 IFERFYRIDPARSREMGGTGLGLSIVKHIVNLHNGAIKLKSTVGKGSTFTVILPQKQEKP 588

Query: 480 FI 481
             
Sbjct: 589 SA 590


>gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 462

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 9/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L++ +      ++ AEE N  KS FLA+MSHE+RTPLNAI+GFS ++  E     + 
Sbjct: 211 ITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTEV----SE 266

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  I R+ + LL LIN+ILDLS+IEAG  E   + + +  +V E      +R  
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K++ +          ++ D++ + QV  N +SNA+KFTA  G + +  G          
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAA-GSITIGYGMPENSYIRFY 385

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+      +   F +      S +QG GLGL I+Q+I+    G+  + S+L +
Sbjct: 386 VTDTGTGISSENAQGIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVESQLSK 441

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 442 GSTFWFTLPFYK 453


>gi|304317402|ref|YP_003852547.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778904|gb|ADL69463.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 462

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 147/336 (43%), Gaps = 18/336 (5%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              +I L+       +    +F  F  ++  L   +I+   +    LA      +S+ T 
Sbjct: 137 IIGIIVLAQPLNLAEIAMNNLFQLFIILIPFLIVISILGGFL----LANRALRPISYMTK 192

Query: 203 ITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           I   +   ++   L+     D++    +    + D    + +E    + +F    SHELR
Sbjct: 193 IAREISMGDLSKRLNLPYTNDEVGHLAQTFDMMID----KIDESIKKQKQFTNDASHELR 248

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+  I G +E +        + E YK  +  I    +H+  L++ +L L+R ++   +L
Sbjct: 249 TPIAVIQGQAESMLEN---NHDIEEYKRTLSIIFDEARHMGKLVSNLLLLARSDSNTDKL 305

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +  +++  +++   +  L+  A+  N+++    +  LS ++ D+  + Q+  N++ NA+ 
Sbjct: 306 NMESLNFSELLEGIVEELKPVAKSNNVDLCLTKNE-LSYIYGDQTRLTQLFYNIIDNAII 364

Query: 382 FTAIGGRVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +   GG ++V V      G YI  SI+D G GI E  I  +   F +   A      G G
Sbjct: 365 YNLPGGHINVVV---ENNGYYIKTSIQDTGIGIPEEHINHIFERFYRVDKARSRQSGGNG 421

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL I Q I   HGG+  + SK   G   I  LP  
Sbjct: 422 LGLSICQWIATVHGGKIDVISKEGHGSTFIVWLPAK 457


>gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003]
          Length = 350

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L+   E  +S+    R   EE      KS F+ ++SHELRTP++ + G+SE I       
Sbjct: 93  LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 150

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  +E+   I+     +  L+N++LDL+R+EAG  ++    + L  ++R+ I    +
Sbjct: 151 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 210

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398
            A+E  +E+  +++        D   M QV++NL+ NA++ T      G+V +       
Sbjct: 211 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 270

Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456
           R    I++ DNG GIAE +IP +   F +   A K  +  G G+GL I ++I+  H G+ 
Sbjct: 271 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 330

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + S+L +G + I  LP  +
Sbjct: 331 SVESELGKGSDFIITLPLYK 350


>gi|329930360|ref|ZP_08283949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328935086|gb|EGG31572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 683

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 177/477 (37%), Gaps = 20/477 (4%)

Query: 6   KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65
           K++E  V + +      L       + +  +     +  L        ++V         
Sbjct: 207 KSRETAVFVDLMTLAGFLIPAMYFLLLYRMQRNEKSLLYLGLFCLSSMIYVATHGQKLLS 266

Query: 66  FTQNPIFPMWSLIT-LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
                +   W +   L   A       + +   ++   ++ W + L      I +   L 
Sbjct: 267 SVWPDLSYEWFIRIQLVFSAFVYYFLLRYIAEAVQGL-IHRWALRLSNAATMIAVGIGL- 324

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             +    ++     IY  +  +I      +   +   +    F  + +            
Sbjct: 325 -ALPTVVFSKMEPVIYMFSVFIIGYITFVMGRGIWRRSADTEFMVIGI------------ 371

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
               +  +    LS               +L    +   L      A +  D+  +R   
Sbjct: 372 -LSIMVVIAVHVLSLMGVYNSLAIVPLEMLLFVVTQAMLLAQRFSRAFTDVDQLSRRLLT 430

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A+ SHELRTPL+ I+  ++ +   + G +++   +E +  I  +G+ L  L
Sbjct: 431 LDGLKDEFMANTSHELRTPLHGIVNIAQSLMDGSSGSVSDRQSRE-LSMIVSTGKRLSTL 489

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +N+ILD S+++ G   L    + L  + +  + ++   A  K + + Q+   +L  +  D
Sbjct: 490 VNDILDFSKLKNGEIVLKRQPVDLKAVTQSVLEVVTHLAAGKPLSLKQEWPDNLPWLDTD 549

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E  +RQ++ NLL NAVKFT   G V VT          +S+ D G GI+   +  V  S+
Sbjct: 550 EDRLRQILYNLLGNAVKFTET-GTVQVTAHAL-NGHVRVSVTDTGIGISPERLIDVFKSY 607

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            Q   A      G G+GL I + ++   GG+    S    G      LP+T++    
Sbjct: 608 DQIGYASDREYSGTGIGLSITKKLVELGGGEIWAESMPGAGSAFHFTLPSTQIPPQA 664


>gi|325679103|ref|ZP_08158697.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Ruminococcus albus 8]
 gi|324109227|gb|EGC03449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Ruminococcus albus 8]
          Length = 1329

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 144/253 (56%), Gaps = 10/253 (3%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE---TYKEYIGDI 294
             ++ AE  N AKSRFLA+MSHE+RTP+N I+G +E++  E    + N    +   Y  DI
Sbjct: 797  AKEEAERANSAKSRFLANMSHEIRTPINTIMGMNEMLLREDPTGVPNSYFMSVMNYAFDI 856

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              + + LL LIN++LD+S+IE+G+  L E    + D++R  + ++++R+ EK +     +
Sbjct: 857  RNASESLLGLINDLLDMSKIESGKMHLVEQEYDVQDMLRSAVALIRVRSVEKALTFDVAV 916

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409
            D  +   ++ D   ++Q+++NLLSNAVK+T +GG + ++V  T   G       S++D G
Sbjct: 917  DEVMPRRMFGDMGKIKQILVNLLSNAVKYTTVGG-IMLSVTMTEREGDTASLRFSVRDTG 975

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI + ++  +  ++ +    + S  +G GLGL I+    A  GG+    S  REG E I
Sbjct: 976  IGIKQEDMGKLFNAYERLDEELNSGIEGTGLGLDISGRFAALMGGKIECESVYREGSEFI 1035

Query: 470  AILPNTRVLNFIP 482
              +   R+++  P
Sbjct: 1036 FTV-KQRIVDARP 1047


>gi|229167896|ref|ZP_04295627.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
 gi|228615536|gb|EEK72630.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
          Length = 448

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 607

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F++++SHELRTPL  +  + E +        + E    ++       + ++
Sbjct: 371 EKIDMERRDFVSNVSHELRTPLTTMRSYLEALAEGAW--QDEEIAPRFLSVTQDETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y  ++  I  +    + I   +  ++ +N+   +++  +   V 
Sbjct: 429 RLVNDLLQLSKMDSKDYRFNKEWIEFVGFFHQIIDRFE-MSKNQNVTFKRQLPKTALFVE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QV+ N++SNA+K++  GG +   V     +   +S+ D G GI +  +  +  
Sbjct: 488 IDKDKLTQVLDNIISNALKYSPEGGLIAFNV-VEKDKMIVVSVSDQGLGIPQDNLSKIFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A      G GLGL IA+ +++ HGG     SK  +G  +   LP
Sbjct: 547 RFYRVDKARSRQMGGTGLGLAIAKEMISAHGGNIWAESKEGKGTTISFSLP 597


>gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 761

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 8/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+       E R  AE  N AKS FLA+MSHE+RTPLN ++G ++ +    +     
Sbjct: 360 ITDLKRDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTELDH--- 416

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I  SG  L  L+++ILDL+R+E+GR E+++    L   + E   +    A 
Sbjct: 417 -DQREILNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPAA 475

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401
           EK ++ F  IDP+    V  D   ++QV+ NL+SNAVKFTA G   ++  VG        
Sbjct: 476 EKGLQFFVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKGFVSLNAAVGRDRDGAAI 535

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G G        + T F Q    I     G GLGL I + +    GG     S
Sbjct: 536 LRFTVEDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDCES 595

Query: 461 KLREGVEVIAILPN 474
           +   G   I  LP 
Sbjct: 596 EAGGGSTFILTLPL 609


>gi|239947837|ref|ZP_04699590.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922113|gb|EER22137.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 497

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLETNRNLKAQIVKLEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++   +I+++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|228932680|ref|ZP_04095554.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826998|gb|EEM72758.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 466

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKICILTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum]
          Length = 1670

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             +    A E    K++F+ ++SHELRTP + I+G S+++    +      T ++ I  I 
Sbjct: 1030 RQAEMAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTN----TQRDNIDSIK 1085

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            RS   L++LIN+ILD S++E G+  L   +  L+ ++ E +      A  K I++   + 
Sbjct: 1086 RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMG 1145

Query: 356  ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409
               P    ++ D   +++V+LNL+ NAVKFT  G  +  ++  + SG       ++KD+G
Sbjct: 1146 RDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSG 1205

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS---KLREGV 466
             GI E +I  +   FGQ   +      G GLGL   + ++A  GG   + S   +  +G 
Sbjct: 1206 IGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGT 1265

Query: 467  EVIAILPNTRVLNF-IPEDNHESTQY 491
                 +  +      +P     + Q+
Sbjct: 1266 TFWFAIKVSISSPSYLPNSVPAANQF 1291


>gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1169

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 9/280 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +  +   D  I    V  +     ++ AE  N AKS FLA+MSHE+RTP+N+ILG ++++
Sbjct: 672 VRERKTADGSIVGFRVDITELMHAKQAAEAANRAKSEFLATMSHEIRTPMNSILGMAQIL 731

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                  +++   ++Y   I  SG+ LL ++N++LDL+++E+GR EL  +      + ++
Sbjct: 732 ---CGPDVSDPRSRDYGRVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQLAQD 788

Query: 335 CIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            + + +  AQ K + I  + D P      AD   ++Q++ NL+SNA+KFTAI G V + +
Sbjct: 789 ILALFRGVAQGKGLIISAEWDGPRTQEYLADGYRLKQMLSNLVSNALKFTAI-GSVDIRI 847

Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                         S+ D G GI+  +   +   F Q   +      G GLGL I + + 
Sbjct: 848 SEIDRTNDFATLEFSVTDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRHLA 907

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              GG+  + S+ ++G  +   +P     +    +   +T
Sbjct: 908 ELMGGEAGLESEEKKGSRLWFRIPAPLATSTSAANESNAT 947


>gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA
 gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1671

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             +    A E    K++F+ ++SHELRTP + I+G S+++    +      T ++ I  I 
Sbjct: 1031 RQAEMAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTN----TQRDNIDSIK 1086

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            RS   L++LIN+ILD S++E G+  L   +  L+ ++ E +      A  K I++   + 
Sbjct: 1087 RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMG 1146

Query: 356  ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409
               P    ++ D   +++V+LNL+ NAVKFT  G  +  ++  + SG       ++KD+G
Sbjct: 1147 RDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSG 1206

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS---KLREGV 466
             GI E +I  +   FGQ   +      G GLGL   + ++A  GG   + S   +  +G 
Sbjct: 1207 IGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGT 1266

Query: 467  EVIAILPNTRVLNF-IPEDNHESTQY 491
                 +  +      +P     + Q+
Sbjct: 1267 TFWFAIKVSISSPSYLPNSVPAANQF 1292


>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 663

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 23/282 (8%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +      I+  + E      +++   +   E +++AE  N AKS FLA+MSHELR+PLNA
Sbjct: 147 ILNDLAGIVMDEIELRLAARKVDELNAELAEAKEKAEVANEAKSIFLANMSHELRSPLNA 206

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILGFS+++      P     + E +G I RSG+HLL+LIN +LDLS+IEAG   L+E   
Sbjct: 207 ILGFSQIMTRSKTLPS---EHIENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNF 263

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++ +   M  L+A ++ +++  +  P +   V  DE  +RQ+++NLL+NA+KFT +
Sbjct: 264 DLYRLLDDLEDMFHLKADDRRLQLIFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQV 323

Query: 386 GGRVHVTV-----------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           GG V V V                   +        ++D+GPGIA  E+ ++   F Q  
Sbjct: 324 GG-VSVRVVTDGGSLVTGTATKQITDESEKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQ 382

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              K A++G GLGLPI++  +   GG+  + S++  G     
Sbjct: 383 TG-KEAQEGTGLGLPISRKFVQLMGGEIAVSSEVGSGTNFKF 423


>gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1686

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NAILG S ++    +        ++Y+G +H++   LL ++
Sbjct: 960  NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1015

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
            N+ILD S+IEA + ++  +   L D++     ++  + +EKN+     + P L   +  D
Sbjct: 1016 NDILDFSKIEAEKMDIECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1075

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421
               + Q+++N  +NAVKF+     V ++        Q      ++D G GI E +   + 
Sbjct: 1076 GLRLGQILINYCNNAVKFSHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLF 1135

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             SF Q   +      G GLGL I + +    GG+    S+L  G      L
Sbjct: 1136 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYVRL 1186


>gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 613

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 377 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 434

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +L LS++++  + L +  +   D     I   +  ++E+N+   +        + 
Sbjct: 435 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 493

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +  
Sbjct: 494 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFE 552

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 553 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 12/342 (3%)

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            +++L    L   + L F  +      +      VL + +    A        ++  +   
Sbjct: 1275 VASLRQEALAEDLHLKFGSLPGGPWPEPATRALVLPVPMGADTAGMGVLVAGLSPLVALD 1334

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAI 267
            +      Q     L A +  A++  ++ ++RAEE    + AK+ F +++SHE RTPL  I
Sbjct: 1335 DEYRGFLQLLARQLAASISSARAY-EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLI 1393

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG  E    +    L  E     +  + R+   L  ++N +LD SR+EAGR +     + 
Sbjct: 1394 LGPVEDALSKPAKALTGEK----LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVD 1449

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            L  + R      Q   +   + +     P    ++ D +   +V+LNLLSNAVK+T   G
Sbjct: 1450 LSAVTRNLASAFQSAVESAGLRLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYE-G 1508

Query: 388  RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             + V + W       ++++D G GI E E+P V   F +       + +G G+GL + Q 
Sbjct: 1509 EIRVVLRWQ-DDHAVLTVQDTGVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQE 1567

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            +M  HGG   + S L EG      LP  R    +P +  E T
Sbjct: 1568 LMKLHGGSISVESTLGEGTAFTLRLP--RGSAHLPPERIERT 1607



 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 31/425 (7%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWRI-----WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            +   +++             R            +   +      L+   +   E   + 
Sbjct: 180 RVLGERRLRTLRDLAARAGPVRREQDAWREAAQVLEGNVLDVPFALLYRMSDAGERPELV 239

Query: 141 KSATLLI--ALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
           ++A      A ++S +                +  P  V         +       A   
Sbjct: 240 ETAGWGTDTAAAVSLMGAPQANLLWPFADAAATLTPQFVPDVRARFAELPRGTWPEAPHS 299

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDD-----------LIAELEVAKSLSDETRKRA 242
           A  L      +  L    V  LS +   DD            IA    +    +E +KRA
Sbjct: 300 AWVLPISRSGSKRLHGFLVAGLSARRAPDDDYRGFLGLVADHIATAISSACAYEEEKKRA 359

Query: 243 EEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           E     +  K+ F  ++SHELRTPL  +LG  E    +T  PL     +E    +HR+G 
Sbjct: 360 EALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPL-PPKQRERQEVVHRNGL 418

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N +LD +R+EAGR + S     L  +  E             + +         
Sbjct: 419 RLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPE 478

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +V+ D     +V+LNLLSNA+KFT   G V + + W  G    ++++D G G+ E E+P 
Sbjct: 479 AVYVDPAMWEKVVLNLLSNALKFTLQ-GEVRIALRWL-GDRVELTVQDTGTGMPEAELPR 536

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A   + +G G+GL + Q ++  HGG   ++S L +G      LP      
Sbjct: 537 IFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPAG--AA 594

Query: 480 FIPED 484
            +P++
Sbjct: 595 HLPQE 599



 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 13/276 (4%)

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                +T  L  S ++  + +AE+    A +E      +E+R+        +   LA +SH
Sbjct: 749  LLARVTALLTVSQLRQAAVRAER----AHVEDTLRFLEESRR----ATRLREDMLAVVSH 800

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            +LR+PL AI   +E++              +    I RS   +  LI+++LDL+ I+AG 
Sbjct: 801  DLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASIDAGT 860

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
              +      + ++VR+   + +  A EK +++  +++P L  +  D++ + Q + NLLSN
Sbjct: 861  LSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI-LSCDKERILQALGNLLSN 919

Query: 379  AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            A+KFT  GG + +      G     +S+ D GPGI     P +   +      +++  +G
Sbjct: 920  AIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYW---HGVQNKREG 976

Query: 438  VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             GLGL IA+ I+ +HGG+  +     EG      LP
Sbjct: 977  HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 9/266 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            + L  +      +A +      ++  +K   E    +  FL  +SHELRTP++A+    +
Sbjct: 1763 RELLVRVRTHLDMARVRREVVRNEIEKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQ 1822

Query: 273  VIELETMGPLNNETYKEYI----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             +         +E   E +        +    L  L+ ++LD S    G  +L+   + L
Sbjct: 1823 SLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDL 1882

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +    +   Q +A      +     PS    + D   + Q++  LL NA+KF   G  
Sbjct: 1883 SGVASAVVEQAQSKAAHAGCVLTLN-APSPVMGYCDRARLHQLLEGLLDNALKF-GAGKP 1940

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + V V W       +++ D+G GI   +   +   F +     +    G GLGL I++ I
Sbjct: 1941 IEVAV-WRDSDHALLTVMDHGAGIEPEDEERIFGRFERAVS--EKNYGGFGLGLWISRHI 1997

Query: 449  MANHGGQFLIRSKLREGVEVIAILPN 474
               H G   +R     G      LP 
Sbjct: 1998 AEAHDGSIRLRPTEGGGATFTVALPL 2023


>gi|213968170|ref|ZP_03396315.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383824|ref|ZP_07232242.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058498|ref|ZP_07250039.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302133390|ref|ZP_07259380.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927150|gb|EEB60700.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 641

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 14/274 (5%)

Query: 215 LSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           ++  AE     + E + + +   +TR+ AE  N AKS FLA MSHELRTP+N +LG  ++
Sbjct: 228 INSLAENLHRTSLEQQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGMLQL 287

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +E   M     +   EY      S +HLL +IN+ILD SRIE    ++   A +L ++V 
Sbjct: 288 METTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAELVS 343

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                    A ++ + +   + P L   +V  D   +RQ+++NL+ NA+KFT   G+V V
Sbjct: 344 VSTHAFNHSALQRKLLLELHVQPGLEAMTVIGDPTRIRQILVNLIGNALKFTEE-GKVCV 402

Query: 392 TVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              W          +  + D+G GI    + ++  +F Q   +I     G GLGLPIA+ 
Sbjct: 403 EADWLMLDDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARK 462

Query: 448 IMANHGGQFLIRSKLREGVEVI--AILPNTRVLN 479
           +    GG     S    G        LP +R ++
Sbjct: 463 LAERMGGTLYAESVEGAGSAFTLQIALPVSRYVS 496


>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
          Length = 1372

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 14/247 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS+FLA+MSHE+RTP+  +LG +E++    +    +E  ++Y+ +I  S   LL +IN
Sbjct: 797  RLKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYLDNIQSSATSLLTVIN 852

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVWA 363
            +ILD S++E+GR ++ E   SL  +V+E + ML+   + KN++    I   +     V  
Sbjct: 853  DILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIG 912

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            D   +RQ+I NLL+N++KFT   G V  +V   S           ++D G GI E     
Sbjct: 913  DPGRVRQIITNLLTNSIKFTNQ-GYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKR 971

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   F QG  +      G GLGL I ++++    G+ ++ S +  G +    +P  +   
Sbjct: 972  LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNK--P 1029

Query: 480  FIPEDNH 486
              P  +H
Sbjct: 1030 HGPRQSH 1036


>gi|154250887|ref|YP_001411711.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154154837|gb|ABS62054.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 664

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 183/471 (38%), Gaps = 24/471 (5%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPI---LPLFVLLVANIGTWFTQNPIFPMWSLITL 80
                     +  I+   V+ L  +           +LV  +  + T             
Sbjct: 60  PGTVRRNPPIETRIVAEQVKLLLSLGEASRWTIFGGILVVGLAFYQTAPIWATAVVAAIQ 119

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYV-WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
            +        +   N+D    E    W     +  +  G  W +  L+     +  +   
Sbjct: 120 LIAQFAFDRVRAGFNADPDNVEHAPKWAHRYALVTLISGATWGVGALLWLPDSSFAHEVF 179

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           Y +    + ++ +A+S    P AV        +            L ++   +     + 
Sbjct: 180 YMAVLAALVMA-TAVSRATYPPAVIYYTLSSCLPAVIMFATRGDALSVAAVLLALMFFAT 238

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRF 252
               T  + +   +    + E  DL+  +  A + +++          RA+    AK  F
Sbjct: 239 IMGWTRRINEGYREAFRLRFENADLVERMARAHAATEQRRRDAEEAEARAKAAMQAKQEF 298

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L  +SHE+R PL+ +   +  +  E +    NET  +    I  + Q L  L+++++D S
Sbjct: 299 LDIISHEVREPLDGLRNMALYLGDEAV----NETQIKIAASIEETSQLLRRLVDDMIDFS 354

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371
            IE+   EL   +   +++    + M++ +A  + + +   + P + ++  AD   +RQV
Sbjct: 355 EIESKSLELKPRSFDPVELTASVVRMMRHQAVTRGLSLELDVAPGIDALMTADADRLRQV 414

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGS 428
           + NL+ NA+KFT  GG  V V    T G       S+ D GPG+AE     +  +F QG+
Sbjct: 415 LSNLIGNAIKFTYQGGVVVRVASLKTPGGETVFRFSVTDTGPGLAEDARARLFEAFTQGA 474

Query: 429 IAIKSAEQ----GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            A          GVGLGLPI++ ++   GG   + S + +G     +LP+ 
Sbjct: 475 DARDYRFSGQTAGVGLGLPISERLVRLMGGHIDVDSTVGQGSTFWFLLPSE 525


>gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
 gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
          Length = 1135

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 12/294 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +    +     +     +        + +      E+E+        R  A   + A
Sbjct: 247 LNLLQQDLVRTLRRLYVSFQELKEHAEQTEDDLRLAFDEMEMQNISIRNARDAAISTSQA 306

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPLN+I GF  ++         N     Y+  I +S  HLL L+N++
Sbjct: 307 KSAFLANISHELRTPLNSIDGFINLLARHG---ELNPEQDLYVQTIRKSSAHLLALVNDV 363

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAG+  L      L D + + + ML   + EK + +       +   V  D   
Sbjct: 364 LDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRVNGDALR 423

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           ++QV+ N++ NA+KFT   G V V V           IS++D+G GI+  +   +  SF 
Sbjct: 424 LKQVLTNIVGNAIKFTDS-GDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 482

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-----RSKLREGVEVIAILPN 474
           QG  +I     G GLGL I++ +    GG          +   +G      +P 
Sbjct: 483 QGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATFWFRMPA 536


>gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1681

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N AKS FLA+MSHE+RTP+NAILG S ++    +        ++Y+G +H++   LL ++
Sbjct: 959  NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1014

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
            N+ILD S+IEA + ++  +   L D++     ++  + +EKN+     + P L   +  D
Sbjct: 1015 NDILDFSKIEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1074

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421
               + Q+++N  +NAVKF+     V ++        Q      ++D G GI + +   + 
Sbjct: 1075 GLRLGQILINYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQKQGVLF 1134

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             SF Q   +      G GLGL I + +    GG+    S+L  G      L
Sbjct: 1135 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185


>gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 391

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +            +   + A++     +++AE+ +++KS FLA+MSHE+RTPLNAI GF+
Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+          E   +Y   I  +   L+ L+N+ILD+S+IEAG  E  ++ + +  +
Sbjct: 190 EVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLL 245

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           + +   + Q+R  E    I    +P  S   +  D   + QV+ N   NA+KFT  G   
Sbjct: 246 LSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303

Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +G+ +     Y  +KD G GI   ++P V   F +        ++G GLGL I+Q+I
Sbjct: 304 -IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A  GGQ    S   EG      +P
Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+N ++G ++V+  +          ++ I  I  SG+ LL +IN+I
Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLADGGLTH---RQRDSIETIRASGETLLTIINDI 540

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+ E+G  EL      L  ++  C+ +L+  A +K++++   +   +   V  D   
Sbjct: 541 LDFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAAR 600

Query: 368 MRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVL 421
           +RQ+++NL+ NAVKFT  G   V+VT    +         + +++D G GI    +  + 
Sbjct: 601 LRQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLF 660

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   +      G GLGL I + +     G+  + S+   G      +
Sbjct: 661 KPFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGSTFSFTI 711


>gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 615

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++++SHELRTPL ++  + E +        + E    ++         ++ +I
Sbjct: 375 DQDRKRFVSNVSHELRTPLTSMKSYIEALVEGAW--KDPEVAPNFLKVTQEETDRMMRMI 432

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-----EKNIEIFQKIDPSLSS 360
           N++L+LSR++ G   L    ++L ++    +    +  +     +KN  I +        
Sbjct: 433 NDLLNLSRMDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYSIKRDFTRRDIW 492

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++QV+ N+++NA+K++  GG +   +  T      +SI D G GI +  I  +
Sbjct: 493 VEVDTDKIQQVLDNIMNNAIKYSPDGGIITCRLLETHNH-VIMSITDQGLGIPKDSISHI 551

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +   A   A+ G GLGL I++ ++  HGG+  + S+  EG      LP   
Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFYISLPYEP 607


>gi|297529462|ref|YP_003670737.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297252714|gb|ADI26160.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 468

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 11/342 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT- 204
           ++A+ +  L    L  A++L      V  +T+   +      ++       +        
Sbjct: 130 VMAVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAAAFWPLAAIFAAALLVVGRRMVRQM 189

Query: 205 ----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMS 257
                 + ++  ++   + E D  +   +    L++   + A+    E+  K  FLA++S
Sbjct: 190 TEPLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVS 249

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPL+ + G+SE +          E  K Y+  IHR  + +  L+ ++LDL+R+E  
Sbjct: 250 HELRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQ 307

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
              L  + ++   ++ + I   +  A +K IE+  ++D  +  V  D   + QV+ NLL 
Sbjct: 308 SVPLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-VNGDADRLEQVVRNLLD 366

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+++T  GG + V +   S     + I+D G GI + ++P +   F +   A    E G
Sbjct: 367 NAIRYTPEGGVMTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGG 426

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I + I++ H G     S L  G+ V   LP  R   
Sbjct: 427 TGLGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPLVREEE 468


>gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1334

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 152/387 (39%), Gaps = 35/387 (9%)

Query: 123  LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L       +     +       L I +    L    L      +             + +
Sbjct: 625  LPPDYVTISSGLGRVVPTALVLLPIVVEGQVLGVIELASVTPFTQIHQDFLAQLMETVGV 684

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------- 235
            +V  I         L     +T  L + + ++ + Q E     AELE   +L        
Sbjct: 685  NVSTIVANARTDELLVESQRLTAELQQRSAELQTQQEELQHSNAELEEKAALLATQNRDI 744

Query: 236  -------DETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                   ++ R+  E         +  KS FLA+MSHELRTPLN+ L     +  +    
Sbjct: 745  EAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNS-LLILAQLLAQNPSR 803

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +    EY   IH +G  LL LIN+ILDLS++EAG+ ++S   ++L  ++       + 
Sbjct: 804  NLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRP 863

Query: 342  RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               +KN++      P   + +  D+  +RQV+ NLLSNAVKFT  GG V + +   +   
Sbjct: 864  MTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELRIEPATDDE 922

Query: 401  Q-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                           +KD G GI E  + ++  +F Q          G GLGL I + I 
Sbjct: 923  VPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIA 982

Query: 450  ANHGGQFLIRSKLREGVEVIAILPNTR 476
               GG   + S   +G      LP TR
Sbjct: 983  HLLGGAVTVDSVAGQGSTFTLFLPVTR 1009


>gi|254521965|ref|ZP_05134020.1| sensory box sensor histidine kinase/response regulator
           [Stenotrophomonas sp. SKA14]
 gi|219719556|gb|EED38081.1| sensory box sensor histidine kinase/response regulator
           [Stenotrophomonas sp. SKA14]
          Length = 733

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 141/315 (44%), Gaps = 13/315 (4%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                 + V   + A  L             L     +     AE+D L    E    L 
Sbjct: 1   MPLWSVLLVALGAAAIALLLLGLRLRTRGRALELLQRERSVLAAERDQLRHTTERQGQLE 60

Query: 236 DETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            +  +    AE   LAK  FLA+MSHE+RTPLN IL   E+I    +G    E  ++ + 
Sbjct: 61  QQLLQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLA 116

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S Q LL ++++ILD SR+EA   EL  ++ +L D++   + ++Q  A  K + +  
Sbjct: 117 TASASSQQLLRIVDDILDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLTL 176

Query: 353 KIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKD 407
           ++DP++   V  D   +RQV+ NLL+NA+KFTA  G+V + V               I D
Sbjct: 177 QLDPAVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVLLRVQRLGEGAAQHQLRFEIID 235

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E     +  SF Q   +      G GLGL I + I+    G+  ++S   +G  
Sbjct: 236 TGIGIDEVLQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGAT 295

Query: 468 VIAILPNTRVLNFIP 482
               +P  +V   +P
Sbjct: 296 FWFEIPLLKVPGDLP 310


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 155/395 (39%), Gaps = 21/395 (5%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIALSI 151
               S              L   +  G+   +    +          ++  S    I    
Sbjct: 700  YRVSIENALRRSESSYRALADNLPNGVVLLVDPADILRVAAGQGLHSLLDSGAPCIPAPY 759

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            + +    L      +   + + +S +   + H      A +           T+      
Sbjct: 760  TTILPSPL------ATELMPLIMSARHGTTAHREIPYGAAVFDVVALPLPGETHRTEGVA 813

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              ++         +   +  +     +R  A   +  KS+F+A++SHE+RTPL+ ILG +
Sbjct: 814  HDVMLL----LQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIA 869

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +V       P      + Y   +    + LL +IN++LD SR+EAGR  L +    L   
Sbjct: 870  DVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTT 926

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            VR+ +  L ++A+ K + +   +   L  ++  D   +RQ+++NL+ NAVKFT   G VH
Sbjct: 927  VRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQ-GTVH 985

Query: 391  VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            V V    G          +I+D GPGI   ++  +  SF Q   +      G GLGL I+
Sbjct: 986  VDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAIS 1045

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            + ++   GG   ++S   EG      LP   +   
Sbjct: 1046 RHLVELQGGDIGVQSTPGEGSVFWFTLPLGDIHPA 1080


>gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002
 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 525

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263
           ++   +  + +L+A +  ++ +S+E R +AE           N AK+RFLA++SHELRTP
Sbjct: 195 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 254

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS+V+  E  G L N+  +EY+  IH+SG HLL+++N +LD+S+IEAGRYEL  
Sbjct: 255 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 314

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               + + +  C  ML  +A+EK + +  ++  S+  + AD++  +Q+++NL+ NA+KFT
Sbjct: 315 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 374

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V      G    +++ D G GIA  ++  +   F Q         +G GLGL 
Sbjct: 375 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 433

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + + +   HGG   IRS   EG  ++  +P
Sbjct: 434 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 463


>gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1110

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 16/270 (5%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +   ++L  ++    +  ++  +     N  K RF+A+ SHELRTPL++I+GFSE++ 
Sbjct: 401 ELEELTNNLEEKVLERTNALEKMNRELVRANELKGRFIANASHELRTPLHSIIGFSEILL 460

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +T G L  E  + Y+  I  S +HLL L+N ILDL++I+AG+ E+S     +  ++ E 
Sbjct: 461 QKTFGDLT-EKQQRYLNTIFGSAKHLLYLVNNILDLAKIDAGKAEISYQTFPVKSVIDEV 519

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +++++  A  K I     +   +    AD+   +Q++ NL+SNA+KFTA  G V + +  
Sbjct: 520 LVVIRPLADRKMIVPETVVHHDV-YFTADKIKFKQILYNLISNAIKFTADSGNVGIAIEK 578

Query: 396 ------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                        S     +S+ D G GI   +   +   F Q   +     +G GLGL 
Sbjct: 579 IISDKKTFPWVTESQEFLKVSVWDTGIGIKPEDRERIFEEFEQIDSSKS--TEGTGLGLS 636

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + + ++  HGG   +     +G      +P
Sbjct: 637 LTKKLVEIHGGHITVEGIYGQGSVFNVYMP 666


>gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1196

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 12/250 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AEE + AKS FLA+MSHE+RTP+N +L  ++++E   +        +E    I  S   L
Sbjct: 529 AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL----PAEQREMARVIRDSATSL 584

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L +IN+ILD S+IEA + +L    +SL ++V     +L +RAQEK I +   +DP+L+  
Sbjct: 585 LTIINDILDFSKIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDM 644

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGE 416
           V  D   +RQ+I NL  NA+KFT   G V + V     R +      SI D G G+   +
Sbjct: 645 VVGDPIRLRQIITNLAGNAIKFTDK-GYVRIAVRALDPRERPLRLEFSITDTGIGLDSEQ 703

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q  I I     G GLGL I + ++A  GG+  +RS + +G      +P   
Sbjct: 704 QARLFEPFMQADITISRRYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGSTFWFQVPLEP 763

Query: 477 --VLNFIPED 484
             V    P D
Sbjct: 764 AEVEAEPPLD 773


>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
          Length = 1320

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R RA+E   AKS FLA+MSHE+RTP+NAI+G S ++    +   
Sbjct: 521 ADITERKRMEGELRVARDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTEL--- 577

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++   +Y+  I ++GQHLL +IN+ILDLS+IEAG+  +  +   L   +     ++  +
Sbjct: 578 -SQRQHDYLRKIQQAGQHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEK 636

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A  K +E+   I P +   +  D   + Q+++N  +NAVKFT  G   V + V   +   
Sbjct: 637 AHAKGLELIFDIAPDVPQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERTDHD 696

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             +  ++ D G G++  +   +  SF Q   +      G GLGL I+  +    GG   +
Sbjct: 697 VLLYCAVHDTGIGLSVEQQKRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTVGV 756

Query: 459 RSKLREGVEVIAI 471
            S+L  G      
Sbjct: 757 SSQLGRGSTFWFT 769


>gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 812

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           ++S    L       D+  + E  ++     R +AEE N  KS FLA++SHE+RTPLNAI
Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +GFS+++    M   +    +E+   I ++   LL L ++I+DLS+I+AG +E     + 
Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L       +  ++ +  E       +  P  +   AD   + QV+ N +SNA+KFT   G
Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V     + +   + ++D G GI+      V   F +      S  QG GLGLP+ +S
Sbjct: 723 TITVGYRIDTRQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           I+   GG   + S+L +G      LP 
Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805


>gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
 gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
          Length = 1169

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 12/294 (4%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +    +     +     +        + +      E+E+        R  A   + A
Sbjct: 250 LNLLQQDLVRTLRRLYVSFQELKEHAEQTEDDLRLAFDEMEMQNISIRNARDAAISTSQA 309

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPLN+I GF  ++         N     Y+  I +S  HLL L+N++
Sbjct: 310 KSAFLANISHELRTPLNSIDGFINLLARHG---ELNPEQDLYVQTIRKSSAHLLALVNDV 366

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAG+  L      L D + + + ML   + EK + +       +   +  D   
Sbjct: 367 LDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRINGDALR 426

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           ++QV+ N++ NA+KFT   G V V V           IS++D+G GI+  +   +  SF 
Sbjct: 427 LKQVLTNIVGNAIKFTDS-GDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 485

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-----RSKLREGVEVIAILPN 474
           QG  +I     G GLGL I++ +    GG          +   +G      +P 
Sbjct: 486 QGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATFWFRMPA 539


>gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
 gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
          Length = 1535

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E  KRAEE N  KS FLA++SHELRTPLN  LG    +         +   ++Y+    R
Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1195

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            SGQ+L+ L+++ILDLSRIEAG+  +      + ++V E      L A  K I +   I P
Sbjct: 1196 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIKELVDEVFSTFSLDATGKGITLETTIAP 1255

Query: 357  SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412
               + V  D   +RQ + NL+ NAVKFT  GG RV  +     G    +  +++D GPGI
Sbjct: 1256 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1315

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E  I ++   F Q   +      G+GLGL I   +M   GG   + S    G  +   +
Sbjct: 1316 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPNMGTAMHFAI 1375

Query: 473  PNTR 476
            P  +
Sbjct: 1376 PVGK 1379


>gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
          Length = 880

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 382 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 437

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 555

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 556 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 615

Query: 469 IAILPN 474
              +P 
Sbjct: 616 TVRIPL 621


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A++SHEL+TPL +I GF E ++      ++  T   ++  I      L  LI++
Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS +E  +  L    + + D+ +E   + Q  A EKNIE+  K D    S+ +++  
Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV LNL+ NA+K+T   G V V V         I + DNG GI + ++  +   F + 
Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + I+ +  G   ++S+L  G E I  +
Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A++SHEL+TPL +I GF E ++      ++  T   ++  I      L  LI++
Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS +E  +  L    + + D+ +E   + Q  A EKNIE+  K D    S+ +++  
Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV LNL+ NA+K+T   G V V V         I + DNG GI + ++  +   F + 
Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + I+ +  G   ++S+L  G E I  +
Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A++SHEL+TPL +I GF E ++      ++  T   ++  I      L  LI++
Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS +E  +  L    + + D+ +E   + Q  A EKNIE+  K D    S+ +++  
Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV LNL+ NA+K+T   G V V V         I + DNG GI + ++  +   F + 
Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + I+ +  G   ++S+L  G E I  +
Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422


>gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 606

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F+A++SHELRTPL  +  + E +    M          ++       + ++
Sbjct: 370 EKIDMDRREFVANVSHELRTPLTTMRSYLEALAEGAMDDPTIAPQ--FLKVTQDETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y  ++  I  I      I   +  ++ +++   +++      V 
Sbjct: 428 RLVNDLLQLSKMDSRDYYFNKEWIPFIRFFDGIIDRFE-MSKAQHVTFKRELPDEQILVE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N++SNA+K++  GG V   V         ISIKD G GI +  +  +  
Sbjct: 487 IDPDKLTQVIDNIISNALKYSPDGGTVTFGVDIQEE-FIVISIKDQGMGIPKDNLDKIFE 545

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG     SK  EG  +   LP         
Sbjct: 546 RFYRVDKARSRQMGGTGLGLAIAKEMIYTHGGDIWADSKEGEGTTIFFTLP----YESTQ 601

Query: 483 EDNHE 487
           ED  E
Sbjct: 602 EDEWE 606


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A++SHEL+TPL +I GF E ++      ++  T   ++  I      L  LI++
Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS +E  +  L    + + D+ +E   + Q  A EKNIE+  K D    S+ +++  
Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV LNL+ NA+K+T   G V V V         I + DNG GI + ++  +   F + 
Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + I+ +  G   ++S+L  G E I  +
Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 155/395 (39%), Gaps = 21/395 (5%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIALSI 151
               S              L   +  G+   +    +          ++  S    I    
Sbjct: 700  YRVSIENALRRSESSYRALADNLPNGVVLLVDPADILRVAAGQGLHSLLDSGAPCIPAPY 759

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            + +    L      +   + + +S +   + H      A +           T+      
Sbjct: 760  TTILPSPL------ATELMPLIMSARHGTTAHREIPYGAAVFDVVALPLPGETHRTEGVA 813

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              ++         +   +  +     +R  A   +  KS+F+A++SHE+RTPL+ ILG +
Sbjct: 814  HDVMLL----LQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIA 869

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +V       P      + Y   +    + LL +IN++LD SR+EAGR  L +    L   
Sbjct: 870  DVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTT 926

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            VR+ +  L ++A+ K + +   +   L  ++  D   +RQ+++NL+ NAVKFT   G VH
Sbjct: 927  VRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQ-GTVH 985

Query: 391  VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            V V    G          +I+D GPGI   ++  +  SF Q   +      G GLGL I+
Sbjct: 986  VDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAIS 1045

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            + ++   GG   ++S   EG      LP   +   
Sbjct: 1046 RHLVELQGGDIGVQSTPGEGSVFWFTLPLGDIHPA 1080


>gi|28869414|ref|NP_792033.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852655|gb|AAO55728.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331018585|gb|EGH98641.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 641

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 154/352 (43%), Gaps = 28/352 (7%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLAT 195
           + +      L AL  + L    L  ++      +  AL + Q       + +S    L  
Sbjct: 164 ILLKAGILALCALLFTFLLARRLSLSLSRPISEMGEALKAIQQGDYHTPMPVSDDAELGA 223

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  +  +L ++++              E + + +   +TR+ AE  N AKS FLA 
Sbjct: 224 LARHINSLAENLHRTSL--------------EQQRSVAQLIQTREEAERANRAKSDFLAM 269

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTP+N +LG  +++E   M     +   EY      S +HLL +IN+ILD SRIE
Sbjct: 270 MSHELRTPMNGVLGMLQLMETTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIE 325

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVIL 373
               ++   A +L ++V          A ++ + +   + P L   +V  D   +RQ+++
Sbjct: 326 RDALQMEGIAFNLAELVSVSTHAFNHSALQRKLLLELHVQPGLEAMTVIGDPTRIRQILV 385

Query: 374 NLLSNAVKFTAIGGRVHVTVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KFT   G+V V   W          +  + D+G GI    + ++  +F Q   
Sbjct: 386 NLIGNALKFTEE-GKVCVEADWLMLDDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADS 444

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLN 479
           +I     G GLGLPIA+ +    GG     S    G        LP +R ++
Sbjct: 445 SISRRYGGTGLGLPIARKLAERMGGTLYAESVEGAGSAFTLQIALPVSRYVS 496


>gi|37519624|ref|NP_923001.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210615|dbj|BAC87996.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 644

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 93/427 (21%), Positives = 178/427 (41%), Gaps = 33/427 (7%)

Query: 69  NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLVGQIAIGLCWTLLT 125
                +W +  L      L++ + +      +  +      +   L     IG   T   
Sbjct: 206 AVFVLVWIIAILGSVFNALTITQPLKELVQGVQRIAQGNFKQRVTLAYPGEIGELITSFN 265

Query: 126 LVEPGTWTPEYLTI-------YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L+     + E   I        K  T +  ++   +        + ++   + +      
Sbjct: 266 LMAQRLQSYEEQNIEEITAEKAKLETFIATIADGGILLDSSLRILLVNPAMLRIFGWGSR 325

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA------- 231
           ++  ++LD+   GM A        ++ ++ +     +        ++    +A       
Sbjct: 326 VVGKNILDLLPVGMRAEVEEPLDSVSRNILEQAECRVVLDKRTLRVLISPVLAPRGDNLL 385

Query: 232 -------KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                  + LS E      E N AKS+F++++SHELRTPL++I  + E +  E    L++
Sbjct: 386 KGVVLTVQDLSKEA-----ELNQAKSQFISNVSHELRTPLSSIKSYIETVY-EFGDSLDD 439

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T  E++   ++    L  L+N++LDLSR+E+GR E     + L+  + + +   +L A+
Sbjct: 440 STKNEFLKTANQETDRLTRLVNDVLDLSRLESGR-EYHFEPVDLVQPIEQTLRTHRLTAR 498

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           ++ IE+   I   L  V  +   ++QV  NL+ NA+KFT  GGRV ++   T       +
Sbjct: 499 DREIELVSDIATDLPLVLGNYDLLQQVFSNLVGNALKFTEPGGRVTLSARRTDDPAKVRV 558

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI+E +   +   F +         +G GLGL I  +I+  H  Q  I S++ 
Sbjct: 559 AVTDTGIGISEEDQRRIFERFFRVEN-RVHTLEGTGLGLSIVDNIVKKHNAQVHIESEVG 617

Query: 464 EGVEVIA 470
           +G     
Sbjct: 618 QGSTFWF 624


>gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1033

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                ++ A+   LAKS+FLA+MSHE+RTP+NA+LG + ++    + P      +E +  
Sbjct: 297 ERKRAKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESDLKP----EQREQLIK 352

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + +SG+ L+ +IN+ILD SRIEAGR  +    + +  ++ E   +   +A+EK +E+F  
Sbjct: 353 VSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEEKGLELFLD 412

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDN 408
           I+P     V  D   + QV+ NL+ NA+KFT   G +H+ V         ++    ++D 
Sbjct: 413 IEPETPLQVIGDPLRLTQVLNNLVGNAIKFT-DHGEIHIGVRVAHYGDATLTLCINVRDT 471

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+A  +I  +  SF Q   +      G GLGL IA+ ++   GGQ  + S + +G  V
Sbjct: 472 GIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQGTNV 531

Query: 469 IAI 471
              
Sbjct: 532 SFS 534


>gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 1350

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +     +  AE  N AKS FLA+MSHE+RTP+NA++G S ++    +    N+  ++ + 
Sbjct: 623 AELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLT 678

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  +G+ LL +IN+ILD+++IEAG   L  +  S   ++ E   +   +AQEK +    
Sbjct: 679 KLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSV 738

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407
            +  SL   +  D   + Q+++NL+ NA+KFT +GG V VTV              S++D
Sbjct: 739 SVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGG-VDVTVSREDDHADTCWLRFSVQD 797

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    +  +   F Q   +      G GLGL + + +    GG+  + S+L  G E
Sbjct: 798 TGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSE 857

Query: 468 VIAILP 473
               LP
Sbjct: 858 FWVELP 863


>gi|118476874|ref|YP_894025.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196046439|ref|ZP_03113664.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225863262|ref|YP_002748640.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229183592|ref|ZP_04310815.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
 gi|118416099|gb|ABK84518.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196022623|gb|EDX61305.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225787926|gb|ACO28143.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228599835|gb|EEK57432.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
          Length = 466

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTHQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 621

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        + E   +++  +      ++
Sbjct: 372 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPKFLKVVQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356
            +IN++L LSR++AG  +L+   +++ ++    +    +  +++         I +    
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   +
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 548

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605


>gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 484

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 187/456 (41%), Gaps = 15/456 (3%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV---ANIGTWFTQNPIFPMWSLITL 80
               P K      +  L V      + +  L VL +   A +        +   +   T 
Sbjct: 13  SRPGPRKGAGGESLPRLAVLGRVTGATLTGLGVLALGCGALVLLAEVTGLVQGAFLNATA 72

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            V    +S     +   +                +           +      P      
Sbjct: 73  LVATGLVSAALAAVAGGLARAATRASEEIPDDALLVTRHGLRGEVAMVEAMEGPFADA-- 130

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS-LAGMLATALSF 199
            SA   I L++          A   +        + +  + +     +  A    T  + 
Sbjct: 131 -SAAAFIGLALFERVLVADRPAFLSAVQAAHHGRAQRCELRLRCDGQAETAPAFMTVEAR 189

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            T +   L +   +     A  + L A+         E          AKS FLA+MSHE
Sbjct: 190 CTALRSGLVRIVWRAPWQAAAAERLKADDAARARAEAEEAN------AAKSHFLAAMSHE 243

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAILGFSE++  ET  PL++    +Y   IH SGQHLL L+N+ILDLSR+EAG Y
Sbjct: 244 LRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDILDLSRVEAGAY 303

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL    + +  +V  C  M+ + A    + +     P L ++ AD +  +Q++LNLLSNA
Sbjct: 304 ELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAFKQIVLNLLSNA 363

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT  GGRV V+V  + G    I ++D GPG+   ++  +   F Q     + A +G G
Sbjct: 364 VKFTPEGGRVQVSV-RSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAGDCTQRA-RGSG 421

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LG+ + + ++  HGG F + S    G  V   LP  
Sbjct: 422 LGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLPLA 457


>gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 441

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 123/231 (53%), Gaps = 1/231 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  ++ F  ++SH+LRTPLN IL   ++++       N E   +Y   I ++   LL 
Sbjct: 179 EIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFNNLNCNEEKSFKYFKSIKQNSLRLLK 238

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN ++D+++I++G +E+     ++++IV +  + +    + K+I +    +     +  
Sbjct: 239 LINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLSVAQYVENKSITLTFDTNTEEKFMAC 298

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + +++LNL+SNA+KFT  GG + + + +       I ++D G GI E ++  +   
Sbjct: 299 DPDKVERIMLNLISNAIKFTNPGGHIFINM-FDEDDYIVICVEDTGIGIPEEDLDIIFER 357

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q + A      G G+GL + +S++  HGG+  +RS   +G + +  LP 
Sbjct: 358 FRQSNRASARNYTGSGIGLSLVKSLVEMHGGKISVRSTYGKGTKFVIKLPV 408


>gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 1191

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +    ++D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ V        +G  
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLPQHTRQGLR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049


>gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 690

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 173/460 (37%), Gaps = 15/460 (3%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF--PMW 75
              +   L  P     ++++ T     L     +          +   F +         
Sbjct: 103 AWQNQHNLWLPDLAAVEQDVTTFQQVGLSSALLLPIRLHEQPIALLVLFGREVQPLDAAL 162

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
             +     A   +  K++                     +   +       +        
Sbjct: 163 LHLIGMATAQVGAALKRLQQQAAIAERER----------LLHLMLDAAPDAMLIADGDEH 212

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-GMLA 194
            L    +A  +     +      +   +         +L         +           
Sbjct: 213 VLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTYFSLIADQRQGPTLDATIEVHARRR 272

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
               F +      ++S          +D    +   A   + E     E     K+ FLA
Sbjct: 273 DGSEFPSEFGLAAWRSLQGEYFTCVVRDVTERQQNQAALRTIEASTELERVAQLKNEFLA 332

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLN IL  +E +     G L N+  ++ +  +  SGQHLL ++N+ILD+ +I
Sbjct: 333 NMSHELRTPLNTILSLTEAVSEGVYG-LLNDRQQQVLDVVTESGQHLLGIVNDILDMIKI 391

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+ EL    + +  I    + M++  A  K I+I  +ID  +  + AD + ++Q+++N
Sbjct: 392 EAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIASQIDHQVDLIEADPRRLKQILVN 451

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           LLSNAVKFT  GGRV + V   +  +  Y+S++D G GIA  ++P +   F Q    +  
Sbjct: 452 LLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIGIAHTDLPRLFRPFVQLDARLSR 511

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +G GLGL +   +   H G   I+S    G     +LP
Sbjct: 512 RHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCFTIMLP 551


>gi|220908653|ref|YP_002483964.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865264|gb|ACL45603.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 645

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 9/237 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L+    +E++   +R    L  
Sbjct: 392 ELNDAKSQFISNVSHELRTPLFNIKSFIETL-HEYGDDLSAAERREFLDTANRETDRLTR 450

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+      A+ L+  + + +   QL A++K IE+ Q+ +P+L +VW 
Sbjct: 451 LVNDVLDLSRLESGK-RYHFEAMDLVQAIEQTLRTHQLNARDKGIELIQEAEPALPNVWG 509

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEI 417
           +   + QV  NL+ NA+KFT  GGRV +     +      G+   + + D G GIA  + 
Sbjct: 510 NYDLLLQVFGNLVGNALKFTPKGGRVAIRAYVLAQTPPLTGKQVRVEVSDTGIGIAPEDQ 569

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F +         +G GLGL I Q+IM  H     + S++  G      LP 
Sbjct: 570 SAIFDRFFRVEN-RVHTLEGTGLGLSIVQNIMQKHHTTIHLVSEVGVGTTFWFDLPV 625


>gi|30261402|ref|NP_843779.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47526578|ref|YP_017927.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184232|ref|YP_027484.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49480021|ref|YP_035527.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165870335|ref|ZP_02214990.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634324|ref|ZP_02392645.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167639386|ref|ZP_02397658.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686693|ref|ZP_02877913.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706391|ref|ZP_02896852.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177651547|ref|ZP_02934336.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568704|ref|ZP_03021608.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196035324|ref|ZP_03102729.1| sensor histidine kinase [Bacillus cereus W]
 gi|196040758|ref|ZP_03108057.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218902507|ref|YP_002450341.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815859|ref|YP_002815868.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228913969|ref|ZP_04077593.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926430|ref|ZP_04089502.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944998|ref|ZP_04107359.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229120939|ref|ZP_04250181.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|229604389|ref|YP_002865818.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254682540|ref|ZP_05146401.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254726202|ref|ZP_05187984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254733958|ref|ZP_05191672.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740354|ref|ZP_05198045.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254753742|ref|ZP_05205777.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254758838|ref|ZP_05210865.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30255256|gb|AAP25265.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501726|gb|AAT30402.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178159|gb|AAT53535.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49331577|gb|AAT62223.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164713830|gb|EDR19352.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167512825|gb|EDR88199.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530212|gb|EDR92938.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170128925|gb|EDS97791.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669216|gb|EDT19959.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172082825|gb|EDT67888.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560120|gb|EDV14101.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|195992001|gb|EDX55964.1| sensor histidine kinase [Bacillus cereus W]
 gi|196028548|gb|EDX67156.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218537752|gb|ACK90150.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227003278|gb|ACP13021.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228662599|gb|EEL18197.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|228814667|gb|EEM60927.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833254|gb|EEM78819.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845691|gb|EEM90718.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268797|gb|ACQ50434.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 466

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|65318667|ref|ZP_00391626.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 463

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 154 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 209

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 266 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 322

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 323 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 380

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 381 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 440

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 441 ESEKGNGTTVSIKL 454


>gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 686

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 9/272 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K     ++   +K + + + E  +       + A+E + AKS FLA MSH++RTP+NA
Sbjct: 262 VSKVVFANMNIHQQKINEMQQEEENRKALMTAYETAKEASEAKSSFLAQMSHDIRTPMNA 321

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + +    +      E  ++ +  I+ S  HLL LI+++LD+SRIE G+ +L ++  
Sbjct: 322 IIGMTAIAMSHS---HEPERVEDCLEKINMSSSHLLALIDDVLDMSRIEKGKMQLMDAPF 378

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +  +V E + +++  A+E+   +           +  D   +RQV+LNL+SN+VK+T  
Sbjct: 379 CMDKLVDEVVTIIRPSAEERGHSLKVDTADLKHRRLIGDSGRLRQVLLNLMSNSVKYTPG 438

Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G V +TV   +            ++D+G G+ E     +   F +     ++  QG GL
Sbjct: 439 NGTVKLTVKEVAQRVAGFGNFVFIVEDSGIGMTEEFRKYIFVPFLREEKVRETHIQGTGL 498

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G+PI Q I+    G   + S+   G      L
Sbjct: 499 GMPITQGIINAMQGSIQVESEPGRGSRFTVTL 530


>gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
 gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
          Length = 1138

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 9/267 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            + I E   ++   +E     E    AKS FLASMSH++RTPLNA++G + +       P
Sbjct: 482 LEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLAL---CTP 538

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            +++   E +  I  S Q LL LIN++LD+S+IE+G+ +L+E+   L + +   + ++Q 
Sbjct: 539 NDSKKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVVTVIQS 598

Query: 342 RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396
           +   +         + +   +  D   + QV+ N+L NAVKFT  GG +++ +       
Sbjct: 599 QTSVRGQHFDVNAWNITHELLCGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEISEIPSPD 658

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +       I D G G++   +  +   F +   A     QG GLG+ I + I+   GG 
Sbjct: 659 PASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRIVDLMGGS 718

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIP 482
             + S+  +G      +        IP
Sbjct: 719 IRVESEPGKGTTFTVEISVRLSSRQIP 745


>gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
 gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
          Length = 2514

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 22/263 (8%)

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            AEE   AKS FLA++SHELRTPLN ++G SE++       L+N+   E    I  S   L
Sbjct: 1907 AEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS----LSNKEQLEMADSIRVSADLL 1962

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357
            L +IN+ILD SR+EA + +L   A +  ++VRE +  +    Q + +  N++I ++I+  
Sbjct: 1963 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNQEKTRRNNVQIIKEINLP 2022

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
               ++ D   + QV+ NL+ N++KFT   G + +     S           +KD G GI 
Sbjct: 2023 QLLIYGDPIRLHQVLGNLIGNSLKFTDR-GSITIGARVDSETEDSATLSFWVKDTGIGIP 2081

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470
              ++  +   F Q   +      G GLGL I +S++     G+  + S    G       
Sbjct: 2082 PAQLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSADGVGTTAMFTV 2141

Query: 471  ILPNTRVLNFIPE-DNHESTQYK 492
                 R     PE    E+ Q K
Sbjct: 2142 KFDKAR-----PEIKAGEAQQIK 2159


>gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
 gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
          Length = 717

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 10/293 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G + T +     I   L    V     Q E      +LE A  +  + + +A+E + AKS
Sbjct: 244 GWINTYVIRSLVIASVLIDFLVTAAIAQFEIRH-RKDLEYASQIEWQAK-KAQEASAAKS 301

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RFL SMSH++RTP+NAI+G++E++E       N E  K+Y+  IH S + LL+LIN IL+
Sbjct: 302 RFLFSMSHDIRTPMNAIMGYTELMEKNIG---NAEKEKDYLSKIHSSSKFLLDLINSILE 358

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           ++RIE+G+  L+  A ++ D++     + +  A EK +E           ++ D   + +
Sbjct: 359 MARIESGKETLNIKACNIFDVLDSLNSVFEKLAHEKGLEYQCTTKIQHPYIYCDPIKLEE 418

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++LN++ N++K+T   G V + +           I+D G G++E  +P     F +    
Sbjct: 419 ILLNIIGNSIKYTDE-GMVLIQIEEGESGQFQCMIQDTGIGMSEAYLPHAFEDFSREKSG 477

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE----VIAILPNTRVLN 479
            +++ +G GLGL I +S++    G   I S++ +G          +     L 
Sbjct: 478 TQTSVKGTGLGLAIVKSLVELMNGTIEISSQVNQGTTTRMKFHFEIAKESELE 530


>gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
 gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
          Length = 781

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +    + R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++       + +
Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNVAD 455

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 456 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 512

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 570

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKIGGEITAESKLNE 626

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 627 GSTFRFTIP 635


>gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1214

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   T     + T + Y   I R+G
Sbjct: 834  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 889

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 890  AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 949

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 950  DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 1008

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 1009 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1068

Query: 476  RVLN 479
             V +
Sbjct: 1069 WVAS 1072


>gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 959

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 12/278 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  D+   ++ A++L D  ++ AE    AKS FLA+MSHE+RTPLN +LG  ++++   
Sbjct: 555 VEFRDITDSVKAAQALLD-AKEAAESATRAKSEFLANMSHEVRTPLNGVLGMLQLLQTT- 612

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +  KEYI    +S + L  L+ +ILD+S+IEAG+ ++ E+      +    + +
Sbjct: 613 ---EQTDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQIIEAEFFTACLQESIMEI 669

Query: 339 LQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            +  A+EK++     +D      +  DE  +RQ++ NL+ NA+KFT   G V V      
Sbjct: 670 FRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALKFT-ESGSVQVDAMVLP 728

Query: 398 GRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
            +         ++ D G GI++ ++  +   F QG  +     QG GLGL I + ++   
Sbjct: 729 AKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQGAGLGLAIVRKLVRIL 788

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           GG+ +I +    G  V   LP    +        +  Q
Sbjct: 789 GGEMVIDNTAGNGTTVYVSLPFKLPVPHQEPAAQQPRQ 826


>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
 gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
          Length = 1117

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 158/359 (44%), Gaps = 10/359 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
            +G  W LL  +           +       +L A+ +  +++  L  ++      + + 
Sbjct: 316 VMGTTWALLVELPEKEAFARIHQLEKLFFFAMLTAIVLVFITSHWLSNSITAPL--LRLT 373

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            + +   +  +         +  +         + +S  + ++      D   ELE    
Sbjct: 374 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITL---IRDQNNELEQNLK 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           +  +  +  +  +  K  FLA+ SHELRTPL+ ++G +E +     GP+  ++ +  +  
Sbjct: 431 VISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQ-KSQRRQLEM 489

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQ L NL++++LD  ++  G  ++++ A++L   VR  + +       K + I  +
Sbjct: 490 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 549

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           I   L  V ADE+ + Q++ NL+ NA+K+T+  G++ ++      +   I + D G GI 
Sbjct: 550 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSE-GKIILSSTVLESQ-IRIQVVDTGQGIP 607

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +     Q +  + +  QG GLGL I++ ++   GG   + S+   G      L
Sbjct: 608 AEQLEHIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 666


>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
 gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
          Length = 949

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V  T G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RTDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1191

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +    ++D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ V        +G  
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLPQHTRQGLR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049


>gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 8/341 (2%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
           +      +  +  + I  ++  LS+         +   V+V     A +    +   +A 
Sbjct: 128 YFVAARPVLDATGVNIKAAVYVLSSTGHMDESITAVRSVLVLSGLGAFLLALGITWIIAK 187

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +L+  +      T  +    ++        D++    +    L+ E     +     +  
Sbjct: 188 ILSRPMLQMQAATRKIAAGELETRLTIQRDDEIGVLADSINHLAIE----LQRYRDTRQE 243

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F A++SHELRTP+  + G+++V++         E   +Y+  IH     L +L++++ DL
Sbjct: 244 FFANISHELRTPITYLEGYAQVLKKRLY--ETEEEKDKYLDIIHEEAMRLQHLVDDLFDL 301

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           +++E G+  LS   I L +I    +  ++L+A EKN+ +  KI+ ++  ++ D     QV
Sbjct: 302 AKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIYGDGLRTEQV 361

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +LNLL NAV++T   G + V +        YI+++D G GI E EIP +   F +   + 
Sbjct: 362 LLNLLENAVRYTEK-GSIVVELDQNRS-FIYIAVEDTGMGIPEDEIPYIFDRFYRVEKSR 419

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGLPIA+ ++   GG+  + SKL  G       
Sbjct: 420 SRQYGGTGLGLPIAKKLVELQGGELKVFSKLGHGTRFEIRF 460


>gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi]
 gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116]
          Length = 859

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 20/312 (6%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238
             + +A   AT       I   +++ N+  +    +   +I + +       A+  S+  
Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+   A++ FLA MSHE+RTP+N ILG +++++       + +  K  I  +  SG
Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----DTQEQKNQIDVLCHSG 528

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL ++N+ILD S+IE G++ + +   S  D +R    + +     K +E+  + +   
Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDP 588

Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412
              ++ D+  + Q++ NL+SNAVKFT I G + +                + + D G GI
Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPI-GSIRLHAELEQFYGAENSVLVVELTDTGIGI 647

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  +   F Q          G GLGL I ++++    G   +RS    G   +  L
Sbjct: 648 ESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGGGTTFVITL 707

Query: 473 P---NTRVLNFI 481
           P     RVL  +
Sbjct: 708 PVKDRERVLRPL 719


>gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
 gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
          Length = 1433

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 12/271 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L+ S+ +     +     I E + A+      R  A   +  KS F+A+MSHE+RTPLN 
Sbjct: 665 LWSSHYEDRRVFSAFIRDITERKAAEEEIARARDEALSASRMKSAFVANMSHEIRTPLNG 724

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++G         +    +   ++Y   +  S   LL +IN+ILD S+IEAG+ E+     
Sbjct: 725 VIGL----TELLLDTDLDCRQRDYAQTLQNSADALLAVINDILDFSKIEAGKLEIDPVDF 780

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
               +V + + +L   AQ   +EI      P   ++  D   +RQV++NL+SNA++FT  
Sbjct: 781 DPRALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDAHRVRQVLVNLVSNAIRFTPK 840

Query: 386 GGRVHVTVGW------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            G V V V         SG     ++ D G GI +     +  +F Q   +      G G
Sbjct: 841 -GEVVVWVDVAPAAPGESGHEVTFTVADTGIGIPDERQQHLFEAFTQVDASTTRQYGGTG 899

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           LGL I++ ++   GG+  + S+  EG     
Sbjct: 900 LGLTISKQLVELMGGEMGLASEPGEGSVFYF 930


>gi|229090353|ref|ZP_04221596.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
 gi|228692936|gb|EEL46654.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
          Length = 466

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
 gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 150/298 (50%), Gaps = 13/298 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            + L  + +       E + +  E      AK +     ++ E++N  K++FLA++SHE+
Sbjct: 86  AHQLTVTLIDYTEPYKELNTIAQERNESIIAKQMLVLKNQQLEQQNRFKNKFLANISHEI 145

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL AI+GFSE+++   +    N      +  I  + + L   IN++LD+++IE G  +
Sbjct: 146 RTPLTAIVGFSELLKKTNL----NFEQLGLLDVITNASEQLTATINDMLDIAKIELGELK 201

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           +S   I+L +++ +   + + +A+ K I    + D  + S    D+  ++QV+ NLL NA
Sbjct: 202 ISNEEINLKEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIGDKLRIQQVLGNLLENA 261

Query: 380 VKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT +G     V  +    +  G    ++D G GI E  + +V  SF Q + +    ++
Sbjct: 262 IKFTNVGNVSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSVFESFHQVNASE--KQK 319

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           G GLGL I ++++    G+  + S+L +G +    LP    L   P+   +S +   +
Sbjct: 320 GTGLGLAITKTLVEALEGKIQVESELGKGSQFRVYLPFKLNLRTSPKTIGKSIETSVF 377


>gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 1179

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 159/376 (42%), Gaps = 18/376 (4%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            L V  ++ G    ++       +T +   + ++A  ++AL+I  L   +    +     
Sbjct: 378 VLAVPVMSRGAALAVMEFASFTPFTDDQRAVIEAALPMLALNIEILERNLRTRDLLEESQ 437

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
                L           +   A            ++    K   + L    E+  L AE 
Sbjct: 438 AQAEELKASEEELRAQGEALQAANEEL------RVSEEELKVQQEALQSANEELRLNAEA 491

Query: 229 EVAK-SLSDETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             A+    +E R  A       E+ +  KS FLA+MSHELRTPLN++L  +  +     G
Sbjct: 492 LEARGLALEEARTEADRRAIEIEQASRYKSEFLANMSHELRTPLNSVLILARDLADNETG 551

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L+++   E    IH SG HLL LIN++LDLS++EAG+  L    I+  D+ +       
Sbjct: 552 TLSDDQV-ESARIIHESGAHLLALINDVLDLSKVEAGKMSLDPVTIATADLAQVIRGRFG 610

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A +K +E   +  P L   + AD   + Q+  NL+SNA+KFT  GG V V +      
Sbjct: 611 PVAADKGLEFTVESAPDLPRTMKADRGKIEQIANNLVSNAIKFTPEGG-VAVRLALDHDG 669

Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D G GI   +   V  +F Q   +      G GLGL I++ +    GG   +
Sbjct: 670 QALALSVADTGIGILPEDRQRVFAAFEQADSSTSRQFGGTGLGLTISRRLARLMGGDITL 729

Query: 459 RSKLREGVEVIAILPN 474
            S    G     ++P 
Sbjct: 730 ESNGDRGSVFTLLMPL 745


>gi|260220402|emb|CBA27903.1| hypothetical protein Csp_A04610 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 597

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 20/343 (5%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA----EK 221
           +   +   L  + ++  + L+I+LA      LS   ++ + +  S +  + C        
Sbjct: 130 ALVGLQGFLEARVLLVTNTLEIALAKRQRDLLSRNLWLAFLVGFSLLACVVCFYVFYEGT 189

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I +     S     +  AE  +  KS FL++MSHE+RTP+N +LG  E+      G 
Sbjct: 190 VRDIEQQRKIDSELRHAKVNAERLSQVKSEFLSNMSHEIRTPMNGVLGMLELAR----GS 245

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  + Y+     S   LL ++NEILD S++EA   +L  SA  L  ++ E  ++   
Sbjct: 246 SDAQEQQHYLATAQNSANALLKILNEILDYSKLEAHHMQLESSAWDLRALLEELKVVYTN 305

Query: 342 RAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396
           R  +K +E    +D      V  D    RQ++ NLL NAVKFT  GG VH++V       
Sbjct: 306 RCVQKQLEFALHLDAQVPPCVVGDALRTRQILTNLLENAVKFT-EGGHVHLSVRVGKYSK 364

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +       +KD G G+   +  ++  +F Q   +      G GLGL I   +     G  
Sbjct: 365 AKDTLVFEVKDTGIGVPLNQQASIFKAFEQADASTTRRFGGTGLGLSICAELARLMQGAL 424

Query: 457 LIRSKLREGVEVIAILPNTRVLNF------IPEDNHESTQYKC 493
            +RS   +G      +P    L         PE   +    K 
Sbjct: 425 TVRSAPGQGSTFCLEVPLQPALEPGGANANSPEALADPAPQKS 467


>gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144]
          Length = 586

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    +  ++ +     +++++E  + +    +        D
Sbjct: 413 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +++         ++I D G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNATRYTQAGDSIKISIE-EDSDFNILTITDTGTGIAPEHLKQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   A K  +QG GLGL I + I+  HGG+  + S+L +G   I  LP ++ ++
Sbjct: 532 YKVDAARKRGKQGTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLPKSKQIS 586


>gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
 gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1204

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 14/236 (5%)

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA+MSHE+RTP+N ++G S ++    +GP      +EY   I  S + LL +IN+ILD+
Sbjct: 824  FLANMSHEIRTPMNGVIGMSNLLVDTPLGP----EQQEYAQAIRHSAEALLAIINDILDV 879

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
            S++EAG+ +L  +   L  +V + + +L+  A  K + +  ++ P L  ++  D   +RQ
Sbjct: 880  SKLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQ 939

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLT 422
            V+LNL+ NAVKFT  GG V V V    G            I + D G G+       +  
Sbjct: 940  VLLNLIGNAVKFTEHGG-VFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQ 998

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             F Q   ++     G GLGL I++ ++   GGQ  +RS    G     ++   R  
Sbjct: 999  PFTQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVIAFERAA 1054


>gi|126660737|ref|ZP_01731835.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
 gi|126617978|gb|EAZ88749.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
          Length = 391

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 151/298 (50%), Gaps = 9/298 (3%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++ + + S     I  + +    L      +  + K+  ++ S   +  +    L+    
Sbjct: 92  IAQEFMKSGAWDYIVESMISPDVLLKTLKNSMRIHKAEKELNSINQQLRENNEVLKQKNE 151

Query: 234 LSDETRKR-------AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
              + +K+        +E +  +S+FLA++SHELRTP+NAI+GFS+++  +   PL++  
Sbjct: 152 ELKQQQKQIHLKNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLSS-Q 210

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  + Q+LL LINE+LD S++   + +L+     L  +V+  I  L      K
Sbjct: 211 QTDIVQRIFNNSQNLLTLINEVLDYSKLNTDQMDLTVEEFDLSMLVQFTIKELSCLTINK 270

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           ++ +   ++ S   ++ D+  +R++++NLLSNA+KFT   G + V V   + +   I ++
Sbjct: 271 DLTLNVDVNLSNPLIFNDKNFLRRILINLLSNAIKFTPT-GHIEVKVWEMNSQKIAIRVE 329

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           D G GIA+  + ++ + F Q    +     G GLGL I  S++    G+  + S+L +
Sbjct: 330 DTGIGIAQEHLKSIFSPFQQVDQTLTRQHSGTGLGLAIVHSLIKMMEGEIHVTSELGK 387


>gi|30019452|ref|NP_831083.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218234975|ref|YP_002366083.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228957670|ref|ZP_04119417.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043139|ref|ZP_04190864.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|229108855|ref|ZP_04238460.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|229126715|ref|ZP_04255727.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|229144004|ref|ZP_04272420.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|229149600|ref|ZP_04277832.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|296501981|ref|YP_003663681.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|29894996|gb|AAP08284.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218162932|gb|ACK62924.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228633946|gb|EEK90543.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|228639401|gb|EEK95815.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|228656655|gb|EEL12481.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|228674624|gb|EEL29863.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|228726198|gb|EEL77430.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|228802012|gb|EEM48882.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296323033|gb|ADH05961.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 466

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 617

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 109/243 (44%), Gaps = 8/243 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  + +F++++SHELRTPL ++  + E +        + +   +++         ++
Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPKFLKVTQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357
            +IN++L LSR+++G  ++    +++ ++    +    +  ++++       I +     
Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKEDHPEKTYTIKRYFTKR 489

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D     QV+ NL++NA+K++  GG +   +  T      +S+ D G GI   +I
Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   A    + G GLGL I++  +    GQ    S   +G      LP   V
Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKETVEALHGQIWAESVEGKGSTFYIALPYEPV 608

Query: 478 LNF 480
              
Sbjct: 609 EEE 611


>gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
 gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
          Length = 953

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 455 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGL----PQGVDR 510

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++            +K + 
Sbjct: 511 LVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKRLG 570

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+ ++  S   D   ++QVI N+L+NA+KFT   G + + V  T G      ++D 
Sbjct: 571 LYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDT-GCIVLNV-RTCGNYLEFQVRDT 628

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E EI  +   F Q    ++   QG GLGL I + ++    G   + S+   G   
Sbjct: 629 GVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGSSF 688

Query: 469 IAILPN 474
              +P 
Sbjct: 689 TVRIPL 694


>gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli H736]
          Length = 708

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 210 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 265

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 266 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 325

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 326 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 383

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 384 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 443

Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494
              +P         +   E +  +C+
Sbjct: 444 TVRIPLYGAQYPQKKGVEELSGKRCW 469


>gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1811

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 5/241 (2%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N  K  FLA +SHELR+PLN ILG++++++      L+ +  ++ +  I R+ +    LI
Sbjct: 1438 NRIKDEFLAVLSHELRSPLNPILGWTQMLQT---YKLDEKATQQALATIERNAKLQTQLI 1494

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             ++LD+SRI  G+  L+ + ++L+ +++  +  ++L A+ KNI+I  +    +  V  D 
Sbjct: 1495 EDLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGEVLGDS 1554

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              ++QV+ NLLSNAVKFT  GG++ + +       Q IS+KD G GI    +P V   F 
Sbjct: 1555 ARLQQVVWNLLSNAVKFTPAGGQIEIDLELKDINAQ-ISVKDTGKGINPNFLPHVFEYFR 1613

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPED 484
            Q          G+GLGL I + +   HGG   + S     G      LP T   +   E+
Sbjct: 1614 QEDSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLPLTATPSPTFEE 1673

Query: 485  N 485
            +
Sbjct: 1674 S 1674


>gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris RCH1]
          Length = 1535

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E  KRAEE N  KS FLA++SHELRTPLN  LG    +         +   ++Y+    R
Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1195

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            SGQ+L+ L+++ILDLSRIEAG+  +      + ++V E      L A  K I +   I P
Sbjct: 1196 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAP 1255

Query: 357  SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412
               + V  D   +RQ + NL+ NAVKFT  GG RV  +     G    +  +++D GPGI
Sbjct: 1256 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1315

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E  I ++   F Q   +      G+GLGL I   +M   GG   + S    G  +   +
Sbjct: 1316 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAI 1375

Query: 473  PNTR 476
            P  +
Sbjct: 1376 PVGK 1379


>gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1513

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E  KRAEE N  KS FLA++SHELRTPLN  LG    +         +   ++Y+    R
Sbjct: 1118 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1173

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            SGQ+L+ L+++ILDLSRIEAG+  +      + ++V E      L A  K I +   I P
Sbjct: 1174 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAP 1233

Query: 357  SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412
               + V  D   +RQ + NL+ NAVKFT  GG RV  +     G    +  +++D GPGI
Sbjct: 1234 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1293

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E  I ++   F Q   +      G+GLGL I   +M   GG   + S    G  +   +
Sbjct: 1294 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAI 1353

Query: 473  PNTR 476
            P  +
Sbjct: 1354 PVGK 1357


>gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
 gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
          Length = 615

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++++SHELRTPL ++  + E +        N      ++         ++ +I
Sbjct: 375 DQDRKRFVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAP--NFLKVTQEETDRMMRMI 432

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-----EKNIEIFQKIDPSLSS 360
           N++L+LSR++ G   L +  ++L ++    +    +  +     EKN  I +        
Sbjct: 433 NDLLNLSRMDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIW 492

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   ++QV+ N+++NA+K++  GG +   +  T      +SI D G GI +  I  V
Sbjct: 493 VEVDTDKIQQVLDNIMNNAIKYSPDGGVITCRLVETHNH-VIMSITDQGLGIPKEAISHV 551

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +   A   A+ G GLGL I++ ++  HGG+  + S+  EG      LP   
Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLPYEP 607


>gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14]
 gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14]
          Length = 576

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 8/304 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           +L  ++  ++ +  I+  G +             L      +          I       
Sbjct: 139 SLWDKSGHTLWINIINNRGKIGVLAVRIICTDDRLPAIQKHMALFGELFRSAIGRQITFN 198

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D  +KRAE+   +   FLA ++HELRTPLN +LG +E+++   +        ++ + 
Sbjct: 199 QAID-AKKRAEDSEQSTRDFLAMINHELRTPLNGLLGAAELLQDTPLDN----DQQKLLT 253

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            ++ SG+ L  +IN++LD S+I AG  EL E       +  +   +   R+ EK ++   
Sbjct: 254 TLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNI 313

Query: 353 KIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                L  +   DE  ++Q+ +NL+SNA+KFT   G VH  + W +   Q  ++KD+G G
Sbjct: 314 YYSNDLPKIFIGDEDRIKQIFVNLISNAIKFTPA-GFVHAKLWWQNKHLQ-FTVKDSGCG 371

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   F Q     K + +G GLGL I + +    GG   + S L  G      
Sbjct: 372 IDHSDQHKLFKPFSQVDNTSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVS 431

Query: 472 LPNT 475
           LP  
Sbjct: 432 LPLA 435


>gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 757

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +      +    E R  A+  N AKSRFLA  SHE+RTPLN I+G S ++    + P 
Sbjct: 208 RDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTHLTP- 266

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                  Y   +  SG  L +LI E+LD S+IEAG+ +L     +L  ++ +   +L  R
Sbjct: 267 ---EQATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPR 323

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           AQ +++EI   +D  L   V  D   +RQV+LNL  NA+KFTA GG   +          
Sbjct: 324 AQARHLEIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPGAMPGEI 383

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D G GIA      +   F Q    I     G GLGL I+  I+   GGQ  + S 
Sbjct: 384 RFMVRDTGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQITLHSA 443

Query: 462 LREGVEVIAILPN 474
              G     ++P 
Sbjct: 444 QGTGSTFEFVVPL 456


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N +LG +E++    +     +  +     +HRSG+ LL +IN+ILD 
Sbjct: 660 FLANMSHEIRTPMNGVLGTTELLLNSAL----TDKQRHLASTVHRSGRTLLAIINDILDF 715

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+ +L      L+ ++ E + +    A+ K + + Q I  ++   +  D    RQ
Sbjct: 716 SKIEAGKLDLECVDFDLLPVLEESLELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQ 775

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +++NLLSNA+KFT  GG V ++  +  G         ++ D G GI       +  +F Q
Sbjct: 776 ILMNLLSNAMKFTETGG-VSLSAEYVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQ 834

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +      G GLGL IA+ ++   GG   + S    G      
Sbjct: 835 ADGSTTRRYGGTGLGLSIAKQLVGLMGGTITVESTPGSGSTFAFT 879


>gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 620

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E+  + +F++++SHELRTPL ++  + E +        + E   +++  +      ++
Sbjct: 372 QKEDQERKQFVSNVSHELRTPLTSVKSYVEALSDGAW--KDAEIAPQFLKVVQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA------QEKNIEIFQKIDP 356
            +IN++L LSR+++G  +L+   +++ ++    +    +        Q+K   I +KI  
Sbjct: 430 RMINDLLSLSRMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKITQ 489

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NAVK++  GG +   +  T      +SI D G GI   +
Sbjct: 490 KDLWVEIDTDTFTQVIDNIMNNAVKYSPDGGVITARLMETKNH-VIMSIADQGLGIPRKD 548

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 549 IGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYISLP 605


>gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 775

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 154/282 (54%), Gaps = 9/282 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDQLRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++E++     +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLLEMD-----SPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   + L ++++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 ISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQLPDELGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++ R   +S+ D+G GIA   I  +   F + +       +G
Sbjct: 530 NAIKYNRPNGQVRIEVEQSAER-VAVSVVDSGHGIAPELIDQLFKPFERLNADPS--VEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL +++S++    G   + S   EG      LP  +V  
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELPVVQVQQ 628


>gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 531

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263
           ++   +  + +L+A +  ++ +S+E R +AE           N AK+RFLA++SHELRTP
Sbjct: 201 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 260

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS+V+  E  G L N+  +EY+  IH+SG HLL+++N +LD+S+IEAGRYEL  
Sbjct: 261 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 320

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               + + +  C  ML  +A+EK + +  ++  S+  + AD++  +Q+++NL+ NA+KFT
Sbjct: 321 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 380

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V      G    +++ D G GIA  ++  +   F Q         +G GLGL 
Sbjct: 381 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 439

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + + +   HGG   IRS   EG  ++  +P
Sbjct: 440 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469


>gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 428

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 5/296 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLA 248
           +L+  L     +     K+ +     +   + LI    ELE  +        +  E +  
Sbjct: 113 VLSITLRNAIRLHQSETKTQLAYKQLKESHEKLIRNNEELERQRQQIQLQNLKLLEVSRL 172

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FL+++SHELRTP+NAI+GF++++       L++    + +  I  + ++L  L+NE+
Sbjct: 173 KSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS-VQTDILKRILNNAKNLSMLLNEV 231

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD S+I++GR  L      L  +V   +  ++   + K + +  +I+   + V+ D   +
Sbjct: 232 LDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSLSVEIELENTLVFNDPMRV 291

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+++NLLSNA+KFT   G + V V   S     ISI+D G GI+  +   +  +F Q  
Sbjct: 292 SQILINLLSNAIKFTER-GCIWVRVTEPSKNRIAISIRDTGIGISSQDCEHIFEAFRQVD 350

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             I     G+GLGL I  S++   GG+ ++ S+L  G      LP    +NF  E+
Sbjct: 351 QGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVGSLFGVELPRQVSVNFASEE 406


>gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 569

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        +  +  E++  I +    + +L+ ++
Sbjct: 343 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDENSLDEFLNIILKESNRIESLVEDL 400

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE  + E+    + L ++ +  +  L   AQ K IEI  +I  +   + A+   +
Sbjct: 401 LDLSHIEQ-QTEIRTERVDLSEVTQTTVNTLYAYAQRKAIEIDAEIQ-NHVMIDAEASKI 458

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NL+SNA+ +++    V+V V +     + + ++D+G GIA  E   V   F +  
Sbjct: 459 AQVVTNLVSNAINYSSDESTVYVRV-YQKDDKRILEVEDHGIGIAPEEQKHVFERFYRVD 517

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  + G+  I S+   G     I 
Sbjct: 518 KARSRDSGGTGLGLSITKHIVEAYQGRIQIESEPDVGTTFRIIF 561


>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 1224

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NAI+G S +     +        + YI  +  S   LL LI
Sbjct: 477 NQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N+ILD S+IEAG+ ++      L +++     ++ LRA E+ +E+  ++D  + + +  D
Sbjct: 533 NDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNLIGD 592

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421
              + Q+++NL +NAVKFT  G  ++ + V    G       S+ D+G G+ + +   + 
Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISILVAERHGDDIKLKFSVSDSGIGMTQEQADKLF 652

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   +      G GLGL I++ +    GG   + ++L +G      +
Sbjct: 653 NKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVSTELGKGSTFSFTI 703


>gi|95930793|ref|ZP_01313525.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133141|gb|EAT14808.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 591

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            + D  + G     +     +   L    V+++   + +     +L          ++ A
Sbjct: 151 RIADEQMTGTTKIVIETVLSMYERLASHTVQLIKEISRRKQAEKKLLDTHQALCLAKEGA 210

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N  KS F+A++SHE+RTPLNA++G   +++ + +     E     +  I  + QHLL
Sbjct: 211 EVANQTKSVFIANISHEIRTPLNAVIGMVHLLKRDGL----TEKQAFRVDKIEDASQHLL 266

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           ++IN+ LDLS++EAG+  L    ++L  +V+E I ML  + + K +++  + +     + 
Sbjct: 267 SVINDTLDLSKVEAGKLVLESVPLNLPSLVQETISMLDGQIEAKGLDLKVECENLRGRLH 326

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIP 418
            D   ++Q++LN L+NA+KFT   G +      T          I + D G GIA  ++P
Sbjct: 327 GDPTRLKQMLLNYLTNAIKFTEQ-GAITFRASVTEESPSVSLLRIEVTDTGIGIATEQLP 385

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + ++F Q   +      G GLGL + + +     G+  ++S +  G      
Sbjct: 386 LLFSNFAQAETSTTRKYGGTGLGLALTRRLAELMEGEAGVQSTVGLGSTFWFT 438


>gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1177

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 174/392 (44%), Gaps = 14/392 (3%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            ++   +  G  + ++ L      +    ++ + A+ ++A++I +  +      +     
Sbjct: 334 LMVAPAMENGEVFAVIELGFLRGVSEAERSLLERASEMLAVAIRSGLDRSRLETLLEETR 393

Query: 169 PVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                L  Q   +   +      + +L  + +   +    L ++N  +     + +    
Sbjct: 394 RQSEELQAQQEELRVSNEELEQQSRILQESQTQMEHQQSELEQTNAHLEEQTQQLEYQRE 453

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +L  A+    +     E  +  KS FLA+MSHELRTPLN+ L  ++++     G L  + 
Sbjct: 454 QLLRAQGALTDKAHELELASQYKSEFLANMSHELRTPLNSTLILAKLLADNKPGNLQADQ 513

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K Y   IH +G  LL LIN+ILDLS+IEAG+  +    +++   ++  +  L+  A+EK
Sbjct: 514 VK-YAQTIHAAGSDLLALINDILDLSKIEAGQVSVLVEPMTIATALQALMEPLRPIAREK 572

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            +E+   +DP + + +  D   + QV+ NLLSNA+KFTA  G V + V    G     ++
Sbjct: 573 GLELTWTVDPGVPASMQTDPMRLAQVLKNLLSNALKFTAK-GSVGLQVSRVPGGMLAFAV 631

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIAE +   +  +F Q   +      G GLGL I++ +    GG   + S   +G
Sbjct: 632 RDTGIGIAEQQQQFIFDAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGTLTVSSTPGQG 691

Query: 466 VEVIAILPN---------TRVLNFIPEDNHES 488
                 +P                +P    ES
Sbjct: 692 SVFTLTVPVILELVEPGQALAAAPLPRPARES 723


>gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 659

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 12/243 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              + + +AEE +  KS FLA+M+HE+RTPLNAI+GFS+V+  E     + ET +E+   
Sbjct: 424 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRQEFADI 479

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  + + L  LI ++LDLS+IE+    L      +  +++E   M+ LR  E  +E+   
Sbjct: 480 IQNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELY 538

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               L  +  D   + Q++ NLL+NA+K T   G +      ++   ++  ++D+G GI 
Sbjct: 539 DCEELV-METDRNRLTQILTNLLTNAIKHTQE-GSIRFGYKRSALSVEFF-VQDSGEGIP 595

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E +I T+ + F Q         +GVGLGL I Q ++   GG   + S++ EG      LP
Sbjct: 596 EDKIDTIFSRFVQLDNW----SKGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 651

Query: 474 NTR 476
             R
Sbjct: 652 LIR 654


>gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 615

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 142/264 (53%), Gaps = 6/264 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++        N+E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K I I    +     +  D   + ++ILNLLSNA+KFT  GG +
Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNAIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V   SG   Y+ +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNVK-DSGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             H G   I+S+L +G E I  LP
Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLP 584


>gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 651

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 10/263 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  ++   E+R+RAE  N AK+ FLA+MSHE+RTPLN ILG  + +E        +
Sbjct: 238 VTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALEDTA----PS 293

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + +IG   R+ + L  L+N+ILDLSRIEAG+  ++     L ++V     +    A+
Sbjct: 294 AEQQRFIGAAIRASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASIEELFSYSAR 353

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           +K + +   +   +   +  D   +RQ++ NL+ NA+KFT  G   + +       +   
Sbjct: 354 KKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEPIRVEEQRIR 413

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++ D G GI E  +  +   F Q         QGVGLGL I + +     G+  + S
Sbjct: 414 LLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRLMNGEVTLES 473

Query: 461 KLREGVEVIAILPNTRVLNFIPE 483
           +   G  V   LP    L   PE
Sbjct: 474 REGHGTTVSLSLPLE--LPQQPE 494


>gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 620

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 8/343 (2%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
            +   ++ +   L A+ ++A+S   L +   ++     +    + + +   +        
Sbjct: 273 LDRQKMWIAVVSLFAVVLAAVSA--LLFYKRITQPIDRITQVFEKLAADEPVKDIPESHR 330

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              +             N +      E   +I++ +   +     ++ AE+    KS FL
Sbjct: 331 KDEIGMLASAADVFRAKNAQTNQLLLESKKMISDQKALNAELAIAKRHAEKALSIKSEFL 390

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHELRTPLN+++G++  +        +     + +  I R+G+HLL +IN+ILDLS+
Sbjct: 391 ANMSHELRTPLNSVIGYTVRLLKHV--NSDRAIQLKALEAIERNGRHLLAMINDILDLSK 448

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEA + +LS   + L ++  + +  +   A+EKN+E+      + ++V  D   + Q++L
Sbjct: 449 IEAQKLDLSIRPVDLNELCEQAVTQVGPAAEEKNLELVFIRSQT-ATVHTDFTRLSQILL 507

Query: 374 NLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NLLSNA+K+T  GG + + +    S +   + + D G GI       +   F Q   + +
Sbjct: 508 NLLSNAIKYTNEGG-IKIELERDISEKYVSLRVIDTGIGIEPENQKRLFLRFEQFDDSSR 566

Query: 433 SAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I  S+    G +  + S + +G      +P 
Sbjct: 567 FQVGKGSGLGLAIVASLSKLLGVRVSVASDVGKGSTFSLRVPV 609


>gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
 gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
          Length = 904

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 131/266 (49%), Gaps = 11/266 (4%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +       E +  A   N+AK+ FL  MSH++RTP+NAI+GF+++          ++  
Sbjct: 509 RKKQMEALKEAQD-ANAANIAKTTFLNHMSHDIRTPMNAIVGFTDIAMKRK----PDKEV 563

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++ +  I +S ++L+ LIN++LD+SRIE+G+ E     + L D+    + + +   + ++
Sbjct: 564 EDCLKKIRQSSEYLMTLINDVLDISRIESGKLEYKPVLVDLRDMTDTVLSIARGYMENRD 623

Query: 348 IEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYI 403
           +      +      V ADE  +R+V+LN++SNAVKFT  GG +                +
Sbjct: 624 LNFSVSREELKNPYVMADELRIREVLLNIISNAVKFTKDGGTISFVAENCPGKDEHHLIV 683

Query: 404 S--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I D G G++E     +   F Q +   +++ +G GLG+ IA+  +   GG+  + S+
Sbjct: 684 RYHISDTGIGMSEEFQTRIFDEFSQENNGARTSYKGTGLGMAIAKQYVDLMGGKIEVSSR 743

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487
              G      +P     + + E+  +
Sbjct: 744 QGVGSAFTVEIPLLIAEHVLTEEKEK 769


>gi|158312523|ref|YP_001505031.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158107928|gb|ABW10125.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1400

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 155/343 (45%), Gaps = 17/343 (4%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +L  + +++ + F   +   +      + +    IM+    +  LA             +
Sbjct: 781  VLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 839

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              L ++N ++    A  ++   E+E+A+   +E  ++    +  KS FLA+MSHELRTPL
Sbjct: 840  VELQRTNNELEEKAALLEEKNQEIELARIGLEEKAEQLALSSQYKSEFLANMSHELRTPL 899

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N++L  ++++       L+ +   ++   IH +G  LL LIN+ILDLS++EAG+  +   
Sbjct: 900  NSLLILAKLLADNPDHNLS-QKQIDFAETIHSAGSELLGLINDILDLSKVEAGKMNVDAG 958

Query: 325  AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             +    +      +    A+EK +     +   +      DE+ ++QV+ NLLSNAVKFT
Sbjct: 959  PVRTAALCDAVAGVFGPTAEEKGLTFEISVTEDVPDEFVTDEQRIQQVLKNLLSNAVKFT 1018

Query: 384  AIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
               G V + V   S    +              ++ D G G+A  ++  +  +F Q    
Sbjct: 1019 DA-GTVRLDVAVASPDTPFVAPSLRSAPMVLSFAVTDTGIGVAAEKLRMIFEAFQQADGT 1077

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  G GLGL I++ I    GG   + S++ +G      +P
Sbjct: 1078 TSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVP 1120


>gi|110800980|ref|YP_696200.1| sensor histidine kinase/response regulator [Clostridium perfringens
            ATCC 13124]
 gi|110675627|gb|ABG84614.1| sensor histidine kinase/response regulator [Clostridium perfringens
            ATCC 13124]
          Length = 1093

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 164  FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220
                  + + ++     +     I  +  +      ++Y   +   + K   ++     E
Sbjct: 773  LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832

Query: 221  KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279
            K+ L  E E     + + +    +    K+ +  ++SHELRTPLN IL   ++I      
Sbjct: 833  KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              L     ++Y   +  +  HLL +IN+I+D S+IE+G Y+L+     ++ +V +  + L
Sbjct: 893  DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +   +E N++I    +     V  D+  + + ++NLLSNA+K+T   G + V +      
Sbjct: 953  KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGYGTIEVFIRECENE 1012

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I+IKD G GI++ +   +   F Q     K   +  G+GL + +SI+  H G   + 
Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072

Query: 460  SKLREGVEVIAILPNTR 476
            S+L +G   I  LP  +
Sbjct: 1073 SELNKGSTFIITLPIRQ 1089


>gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 511

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 7/244 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                ++   +A +   AKS FLA MSHE+RTP+N+ILG   ++    +   +    +E 
Sbjct: 13  KNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED----REK 68

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H SG  LL +IN+ILD SR+EA   +  ++   L + V   + +L+ RA EKN+ +
Sbjct: 69  LSVVHDSGAALLGIINDILDFSRLEADGVQFEDAPFHLGNTVEGVVSLLRGRATEKNLTL 128

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDN 408
                  L   V  D   +RQV++NL+ NA+KFT  GG V + +       +Y  S+ D 
Sbjct: 129 ALDAPSPLPGWVSGDGARLRQVLINLVGNAIKFTTQGG-VVLRLRRDGEGNRYEFSVIDT 187

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+   +   +   F Q   +I     G GLGL I + ++   GG+  + S    G   
Sbjct: 188 GIGLEAEQAKNLFQPFHQADASISRRFGGSGLGLAICKKLVDAQGGKIGVDSTKGLGSRF 247

Query: 469 IAIL 472
              L
Sbjct: 248 WFHL 251


>gi|225568038|ref|ZP_03777063.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM
           15053]
 gi|225163134|gb|EEG75753.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM
           15053]
          Length = 1004

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 8/238 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + +A+  + AK+ FL+ MSHE+RTP+NAI G +  I    +   + +   + +  I  + 
Sbjct: 617 KSKADAVSRAKTDFLSRMSHEIRTPMNAISGMT-TIAKSVLD--DRKKTMDCLNKIESAN 673

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
            +LL+LIN+ILD+SRIE+G+ EL+   + L+ ++++   + + +A+EK++E+    +   
Sbjct: 674 AYLLSLINDILDMSRIESGKMELNYEPVDLVQLMQKLEYLFKAQAEEKHLELIFVNEYSG 733

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAE 414
              + AD   + QV++N++ NA+KFT   GR+ V V             S+ D G GI  
Sbjct: 734 GRRLNADSLRLNQVLVNIIGNALKFTGQ-GRITVRVEELEASPMAVLRFSVADTGIGIEP 792

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  V  +F Q   A  +   G GLGL I+  ++   GG     SK+ EG E    L
Sbjct: 793 EALSRVFNAFEQADPATAARNGGTGLGLAISSRLVQMMGGTLEADSKVGEGSEFFFTL 850


>gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
 gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
          Length = 1236

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 218  QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
            + +  + +     +K   ++    AEE N AKS FL+SMSH++RTP+NAI+G + +    
Sbjct: 826  RQDVTETMTAERRSKETLEQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAH 885

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                   E  +  +  I  S +HLL+LIN+ILD+S+IE  +  L+   + L D++ +   
Sbjct: 886  L---DEREKVENCLRKITLSSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYS 942

Query: 338  MLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
            ++  +AQE  ++   +    +    + D   + Q+++N+L NAVKFT  GG V       
Sbjct: 943  IIGQQAQEAGLQFDVRTSNIIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEEL 1002

Query: 396  ---TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         +I+D G G+ E  +  +   F +         +G GLGL I + ++ 
Sbjct: 1003 PTIKGPGYVRYCFTIRDTGIGMPESFLSHLFEPFTR--NRNTEHVEGSGLGLSITKGLIE 1060

Query: 451  NHGGQFLIRSKLREGVEVIA 470
              GG+ L+ S+ R G     
Sbjct: 1061 LMGGELLVESRERAGTTFRV 1080


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1991

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 12/342 (3%)

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            +++L    L   + L F  +      +      VL + +    A        ++  +   
Sbjct: 1238 VASLRQEALAEDLHLKFGSLPGGPWPEPATRALVLPVPMGADTAGMGVLVAGLSPLVALD 1297

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAI 267
            +      Q     L A +  A++  ++ ++RAEE    + AK+ F +++SHE RTPL  I
Sbjct: 1298 DEYRGFLQLLARQLAASISSARAY-EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLI 1356

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG  E    +    L  E     +  + R+   L  ++N +LD SR+EAGR +     + 
Sbjct: 1357 LGPVEDALSKPAKALTGEK----LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVD 1412

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            L  + R      Q   +   + +     P    ++ D +   +V+LNLLSNAVK+T   G
Sbjct: 1413 LSAVTRNLASAFQSAVESAGLRLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYE-G 1471

Query: 388  RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
             + V + W       ++++D G GI E E+P V   F +       + +G G+GL + Q 
Sbjct: 1472 EIRVVLRWQ-DDHAVLTVQDTGVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQE 1530

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            +M  HGG   + S L EG      LP  R    +P +  E T
Sbjct: 1531 LMKLHGGSISVESTLGEGTAFTLRLP--RGSAHLPPERIERT 1570



 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 31/425 (7%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWRI-----WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            +   +++             R            +   +      L+   +   E   + 
Sbjct: 143 RVLGERRLRTLRDLAARAGPVRREQDAWREAAQVLEGNVLDVPFALLYRMSDAGERPELV 202

Query: 141 KSATLLI--ALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
           ++A      A ++S +                +  P  V         +       A   
Sbjct: 203 ETAGWGTDTAAAVSLMGAPQANLLWPFADAAATLTPQFVPDVRARFAELPRGTWPEAPHS 262

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDD-----------LIAELEVAKSLSDETRKRA 242
           A  L      +  L    V  LS +   DD            IA    +    +E +KRA
Sbjct: 263 AWVLPISRSGSKRLHGFLVAGLSARRAPDDDYRGFLGLVADHIATAISSACAYEEEKKRA 322

Query: 243 EEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           E     +  K+ F  ++SHELRTPL  +LG  E    +T  PL     +E    +HR+G 
Sbjct: 323 EALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPL-PPKQRERQEVVHRNGL 381

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N +LD +R+EAGR + S     L  +  E             + +         
Sbjct: 382 RLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPE 441

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +V+ D     +V+LNLLSNA+KFT   G V + + W  G    ++++D G G+ E E+P 
Sbjct: 442 AVYVDPAMWEKVVLNLLSNALKFTLQ-GEVRIALRWL-GDRVELTVQDTGTGMPEAELPR 499

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A   + +G G+GL + Q ++  HGG   ++S L +G      LP      
Sbjct: 500 IFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPAG--AA 557

Query: 480 FIPED 484
            +P++
Sbjct: 558 HLPQE 562



 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 13/276 (4%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               +T  L  S ++  + +AE+    A +E      +E+R+        +   LA +SH
Sbjct: 712 LLARVTALLTVSQLRQAAVRAER----AHVEDTLRFLEESRR----ATRLREDMLAVVSH 763

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           +LR+PL AI   +E++              +    I RS   +  LI+++LDL+ I+AG 
Sbjct: 764 DLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASIDAGT 823

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             +      + ++VR+   + +  A EK +++  +++P L  +  D++ + Q + NLLSN
Sbjct: 824 LSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI-LSCDKERILQALGNLLSN 882

Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A+KFT  GG + +      G     +S+ D GPGI     P +   +      +++  +G
Sbjct: 883 AIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYW---HGVQNKREG 939

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL IA+ I+ +HGG+  +     EG      LP
Sbjct: 940 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 9/266 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            + L  +      +A +      ++  +K   E    +  FL  +SHELRTP++A+    +
Sbjct: 1726 RELLVRVRTHLDMARVRREVVRNEIEKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQ 1785

Query: 273  VIELETMGPLNNETYKEYI----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             +         +E   E +        +    L  L+ ++LD S    G  +L+   + L
Sbjct: 1786 SLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDL 1845

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +    +   Q +A      +     PS    + D   + Q++  LL NA+KF   G  
Sbjct: 1846 SGVASAVVEQAQSKAAHAGCVLTLN-APSPVMGYCDRARLHQLLEGLLDNALKF-GAGKP 1903

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + V V W       +++ D+G GI   +   +   F +     +    G GLGL I++ I
Sbjct: 1904 IEVAV-WRDSDHALLTVMDHGAGIEPEDEERIFGRFERAVS--EKNYGGFGLGLWISRHI 1960

Query: 449  MANHGGQFLIRSKLREGVEVIAILPN 474
               H G   +R     G      LP 
Sbjct: 1961 AEAHDGSIRLRPTEGGGATFTVALPL 1986


>gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
 gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
          Length = 947

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 151/381 (39%), Gaps = 23/381 (6%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVA 173
           +   LC+ L             + +  S   +I AL +   ++      V L +    VA
Sbjct: 429 LCFTLCFALTINSYYTGGHQSTIRLLMSTVPIISALVLGRRASIQWSLMVLLIYLSFFVA 488

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
                     +  I     +  +   F      +  + +  L  Q   D+   E ++  +
Sbjct: 489 NLYGHEYVQGIPSI-----IIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNA 543

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +  A E   A+  FLA+MSHE+RTPLN ++G + ++             K     
Sbjct: 544 QLTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKA 600

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +   G  LL L+N+ILDLS++EA +  L      + ++ ++   +L  +A EK I++  +
Sbjct: 601 VKSCGDILLRLVNDILDLSKLEANQMGLEHIPFKMRELTQQICHVLSGQANEKGIQLACE 660

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS-------- 404
           +   +  ++  D   + Q+++NL  NA+KFT   G V + V       + +S        
Sbjct: 661 VSDKIPATLVGDSGRILQILMNLTGNALKFT-QSGYVKIIVDLIEEESELVSSRKGEYNI 719

Query: 405 ---IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              IKD G G+       +  +F Q   +      G GLGL +   ++    G+  + + 
Sbjct: 720 SFRIKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMKGEIGVYNN 779

Query: 462 LR-EGVEVIAILPNTRVLNFI 481
              EG     I+P     + +
Sbjct: 780 PDCEGSTFWFIIPLEEGTDSM 800


>gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
          Length = 956

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 9/258 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 453 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++          A +K + 
Sbjct: 509 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAVKKRLT 568

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +  +   D   ++QVI NLL+NA+KFT  GG +     +  G      ++D+
Sbjct: 569 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + +M    G   + S+   G + 
Sbjct: 627 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 686

Query: 469 IAILPN--TRVLNFIPED 484
           I  +P   +RV+   P D
Sbjct: 687 IIRIPLYNSRVVTLEPRD 704


>gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 798

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 135/260 (51%), Gaps = 9/260 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD--- 293
           E + + E+      +FL ++SHEL+TPLN I   ++++EL        E  ++ I D   
Sbjct: 528 EAKLKMEKTLKMHEQFLTNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYF 587

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I ++   L+ LI  I+DLS+IE+G ++L+ S  +++ +V + +  +    + K++ I   
Sbjct: 588 IRQNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFD 647

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            D     +  D   + +V+LNL+SNA+KF+  G  ++V +         IS+KDNG GI 
Sbjct: 648 TDVEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVNIA-DKNETVEISVKDNGIGID 706

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +  +   F Q   +     +G G+GL + +SI+  HGG+    SKL EG      LP
Sbjct: 707 KNHLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELP 766

Query: 474 NTRVLNFIPEDNHESTQYKC 493
             RV+    E+   + + KC
Sbjct: 767 L-RVI----ENEKSAAENKC 781


>gi|34497668|ref|NP_901883.1| sensor histidine kinase/response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103523|gb|AAQ59885.1| probable sensor histidine kinase/response regulator
           [Chromobacterium violaceum ATCC 12472]
          Length = 734

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 12/284 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            ++    + +     LE      +E R +AE  +LAKS FLA+MSHE+RTPLN +LG   
Sbjct: 200 TVIRQLRQLEKRRQTLETLTDNLEEARSQAEAGSLAKSAFLANMSHEIRTPLNGVLGMLA 259

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++         + +   YI     S +HLL L+N++LD S++E+G+ EL+    +L  ++
Sbjct: 260 LLADS----HPSASQANYIRTAEESARHLLLLLNDVLDASKLESGKLELAPVTCNLAYLL 315

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           R+   ++  +AQ K + +  ++   +   V  D   +RQ++LNLLSNA+KFT  GG V V
Sbjct: 316 RQVTNLMNAQAQAKGLMLNLEMASEIPQWVELDPTRLRQIVLNLLSNAIKFTERGG-VTV 374

Query: 392 TVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
               T+G         + + D G G+ +  +  +   F QG  +      G GLGL I+Q
Sbjct: 375 HASATAGEQPGTAQLLLVVTDTGIGMDQATLSKLFKRFSQGDGSTARQFGGSGLGLEISQ 434

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHEST 489
           S+    GG   + S   +G      LP   +    +P +  E++
Sbjct: 435 SLAQLMGGGISVSSVPGQGSCFQLTLPLRVIAAPDLPPETAEAS 478


>gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 554

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 131 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 190

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 191 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 245

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 246 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 305

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 306 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 362

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 363 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 412


>gi|239623884|ref|ZP_04666915.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521915|gb|EEQ61781.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1293

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + +A+  + AK+ FL+ MSHE+RTP+NAI G +  I    +   + E   + +  I  + 
Sbjct: 903  KSKADAVSKAKTDFLSRMSHEIRTPMNAISGMT-TIAKNVLD--DREKTLDCLEKIESAN 959

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             +LL+LIN+ILD+SRIE+G+ ELS S + L   +     + + +A+EK++++  +   S 
Sbjct: 960  TYLLDLINDILDMSRIESGKMELSTSPMDLRQQIDGLEALFRTQAEEKHLDMRFENRYSS 1019

Query: 359  SSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAE 414
            + +  AD   + QV++N++ NAVKFT  GG + V V             S+ D G GI  
Sbjct: 1020 TRLLIADGLRLNQVLINIIGNAVKFTEQGG-ITVKVEQLEESPRAVLRFSVADTGIGIEP 1078

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-- 472
              +  +  +F Q      ++  G GLGL IA  ++   GG   + S++ +G E    L  
Sbjct: 1079 SALDRIFNAFEQAEAGTAASYGGTGLGLSIASRLVQMMGGTLEVSSQIGKGSEFFFTLGF 1138

Query: 473  -PNTRVLNFIPEDN 485
                  ++ IP+D 
Sbjct: 1139 DYAQEAISDIPQDE 1152


>gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
 gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
          Length = 989

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 130/259 (50%), Gaps = 8/259 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +  ++++E N A++ F +SMSH++RTP+N I+G + + +     P   E     +
Sbjct: 440 RQDLADALRQSQENNQARTVFFSSMSHDIRTPMNGIIGMTTIAQAHLNEP---EKVAHCL 496

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  + QHLL+LINE+LD+SRIE+G+  L +  ++L  ++ + +I+++    +K   + 
Sbjct: 497 DKISLASQHLLDLINEVLDMSRIESGKISLKKEPVNLSQLISDVLILVKPDLTKKRQTLH 556

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
            +       +V  D   +++++LNLLSNAVK+T     + + +              +++
Sbjct: 557 IRSSALDYDTVLGDTLHLQKILLNLLSNAVKYTPPEQDITIGLHEEPDGDDKIKVIFTVE 616

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+    +  + T F +   +  S   G GLG+ I ++I+    G   + S+L  G 
Sbjct: 617 DTGIGMTPEFLTRIFTPFERAQDSRISQISGTGLGMAITKNIVDMMSGTLQVESQLGVGS 676

Query: 467 EVIAILPNTRVLNFIPEDN 485
           +    LP +       ++ 
Sbjct: 677 KFTVTLPLSTAQTPQLQEA 695


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 154/358 (43%), Gaps = 10/358 (2%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
           +G  W L+  +           +       ++ A+ +    + +L  ++      + +  
Sbjct: 314 LGNKWALVVELPEKEAFARITELEKIFGFGMITAILLVIFVSHLLSNSITAPL--LRLTW 371

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + +      +  I      +  +         + +S  + +     ++D   ELE +  +
Sbjct: 372 AAEKASGGDLDQIIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKI 428

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +     +  +  K  FLA+ SHELRTPL+ ++G +E +     GPL +   +  +  +
Sbjct: 429 IQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDP-QRRQLEML 487

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SGQ L NL++++LD  ++  G  ++   AI L   VR  + +       K + I  +I
Sbjct: 488 INSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQI 547

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
              L  V ADE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI  
Sbjct: 548 PADLPLVDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPS 605

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++  +     Q +    +  QG GLGL I++ ++   GG+  + S+   G      L
Sbjct: 606 EQLEHIFEPLIQANSGSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMVGTTFSFTL 663


>gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 528

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 10/309 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             ++   +        V  +S   +         Y+T     S ++ +  Q E      E
Sbjct: 78  ILIIFVTAISKETKYAVKGLSTGAVDYLYKPLDPYVTAAKVDSFIQFIRNQREVKKKNKE 137

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           LE  +    + ++ AE     K  FLA+MSHE+RTP+N I+G +++++   +     +  
Sbjct: 138 LEAYQKELIKAKELAETGKRIKDNFLANMSHEIRTPINGIIGIAQLLKKTEL----TDEQ 193

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E +  +  S   LL +IN++LDLS+IE+G+++++ +A  +I I    + +L++ + EK 
Sbjct: 194 REMVNLLEISSNSLLGVINDVLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEKK 253

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
           +++   +D  L   + AD   + Q+++NL+ NA+KFT   G V + V   + +G      
Sbjct: 254 LDLKLALDSELPKMILADSLRLNQILMNLIGNAIKFTHQ-GSVTLKVEILNRKGNNLQLR 312

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GIA+  I  +  +F Q          G GLGL I +++    GG   + S+ 
Sbjct: 313 FSVADTGIGIAKENIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEE 372

Query: 463 REGVEVIAI 471
             G      
Sbjct: 373 NIGSTFSFS 381


>gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 723

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      +K+AEE N AKS FL++MSHELRTPLNA++G S  +  E           E +
Sbjct: 339 ERELLLAKKKAEEANKAKSDFLSNMSHELRTPLNAVIGISLWLLEENPKT----EQLENL 394

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            ++  S + LL+LIN+ILD ++IE    E+     +L D ++       +RA+EK +   
Sbjct: 395 KNLKFSSESLLSLINDILDFNKIEERLVEIERIDFNLKDFLKSITTSFTMRAKEKLLIFN 454

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
           + I  ++   + +D   + Q++ NLLSNA+KFT + G + + V               + 
Sbjct: 455 EDIKDTVPEFIHSDPTRLLQILNNLLSNALKFTQV-GSITLYVSAIPMDSESVLLTFEVT 513

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +  +V   F Q +        G GLGL I+++++   GG  ++ S++ +G 
Sbjct: 514 DTGIGIEPNKFQSVFEKFTQANQDTTRKFGGSGLGLAISKALVELLGGHLVLTSEVGKGS 573

Query: 467 EVIAILPNT 475
           +    LP  
Sbjct: 574 KFSFSLPCK 582


>gi|298387628|ref|ZP_06997179.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259484|gb|EFI02357.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 641

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 22/287 (7%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A  L   L     + Y+     +K    ++EKD                + RAEE N  K
Sbjct: 372 ALFLILVLGLCISLFYYFRTKRLKDDLLKSEKD------------LRVAKDRAEESNRLK 419

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLN+I+GFS+V+    +G    E  + Y   I  +   LL LIN+IL
Sbjct: 420 SAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLINDIL 476

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           DLSR+EA R  L+     ++ + R+ +  + + +++   +     D     +  D + M+
Sbjct: 477 DLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQRMQ 535

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           QVI+NL+SNA KFT   G++ +             S+ D G GI + +   V   F +  
Sbjct: 536 QVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEKL- 593

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                  QG GLGL I + I+    G   I S+   G   +   P  
Sbjct: 594 ---NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFMFSHPLK 637


>gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 518

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 185/464 (39%), Gaps = 24/464 (5%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           +      +  F  E +    E++ R + +  +   ++A           F       +  
Sbjct: 69  VKRYPRVRQLFGIEFMRQ--ETIVRSAMVAIIVTTVLAGCFAIAHGLATFIY---TMIGY 123

Query: 83  YAANLSLGKKVMN-SDIKIGEVYVWRIWLLVGQIAIGLCW---------TLLTLVEPGTW 132
            A      +   + + +    +       L  ++  G  +           +T+      
Sbjct: 124 QAIAAPDARYFWSLNWLLWLFILFLIKRFLWAKLPFGDEFMNKDKIVKGAAITITVMVIG 183

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                  Y  A+L+ ++ +    +       + + F   + +    ++  ++   ++A  
Sbjct: 184 IGCMAVAYLFASLIHSIVMGYRYSVPEEAPPYFNLFWFCIWILLLLMIKWYLKHRNIAKY 243

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +    +    +      +    L  + +KD+  + L  + ++      + E     +  F
Sbjct: 244 IDLFAAVIRALESIAKGNFNVRLDDKFKKDESFSRLVKSVNMMASGLDQME---KMRQEF 300

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           ++++SHE+++PL +I GF+++++ + + P   E  K Y+  I    + L  L + +L L+
Sbjct: 301 ISNVSHEIQSPLASIQGFAQLLQNDELSP---EERKHYLSIIETESKRLSKLSDSLLKLA 357

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
            +E+        A  L   +R  I+  + + +EK I +   +D    ++ ADE  M QV 
Sbjct: 358 ILESDSMRFEPKAYRLDKQLRNLILACEPQWREKRINMEAFLDE--VTITADEDMMSQVW 415

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NL+ N++KFT  GG V V +    G+     I D G GI E +   +   F +   + +
Sbjct: 416 INLIYNSIKFTPEGGSVRVDLNQ-HGKTIVCKISDTGIGIPEEDQKHIFERFYKADKSRE 474

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +++G GLGL I + I+  H G   ++SK   G      LP  R
Sbjct: 475 RSKKGGGLGLSITKKIIDMHYGDISVQSKSGTGTTFTVSLPIQR 518


>gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 779

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L    +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNLPDEIGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + +  T+ +   +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG   I  LP  RV    
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 630


>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 933

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V  T G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RTDGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|295691446|ref|YP_003595139.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295433349|gb|ADG12521.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 584

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 103/464 (22%), Positives = 179/464 (38%), Gaps = 31/464 (6%)

Query: 35  REIITLHVESLFRV-SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
               T H  +  R  + +  +    +A I   F       +W+ I  ++    L   + V
Sbjct: 2   ERRRTAHALASRRANTSLRLIAAFAIALILDVFIHLRWVWLWAAIYASLQFVELWGWRWV 61

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI----YKSATLLIAL 149
                +   ++  R+ + V  +     +  L+L    +      T+       A L + +
Sbjct: 62  RGRSERAQALWR-RLTITVLPVLTSTVFGFLSLPLFASQARFAPTLGGMLLAGALLNVVV 120

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
              +    ++  +     + ++V L  ++      L  +L       ++  T   + L  
Sbjct: 121 INGSQRAAIISASTPYVLYLLIVPLVARSANPGSPLANALWFGALLLIATVTIAAHTLHT 180

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +       + E +                R  AEE   AKS F+A +SHELRTP++AI+ 
Sbjct: 181 ALRAEAEAKDEAERR--------------RHEAEEAVAAKSAFVAMISHELRTPISAIMA 226

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +  +  E        + K     I  +G  +  L+N++LD SR+EAGR  + ++  +L 
Sbjct: 227 GATRLHSEV----PEASSKVQAQLIADAGGLMRGLLNDLLDFSRLEAGRMSVEKAPFNLR 282

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
             + + + + +  A  K + +  K   +L   V  D   +RQV+ NLLSNA+KFT   G 
Sbjct: 283 QTIADTVRLWRPEATRKGLRLRVKGAAALPRWVAGDAMRLRQVLNNLLSNALKFTTR-GE 341

Query: 389 VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           + V              I + D GPGI E  +  + T F Q S AI     G GLGL I+
Sbjct: 342 ITVAPRAEIEGSVVLLSIEVIDTGPGIPEAALSRLFTPFEQLSEAIARHHGGSGLGLVIS 401

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + +    GG     S    G            +   P D  +S 
Sbjct: 402 RELARLMGGDLSASSPSGGGARFTIT--ARLEIAEAPADAPQSP 443


>gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J2-003]
          Length = 591

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + +++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative
           [Acaryochloris marina MBIC11017]
          Length = 691

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 21/320 (6%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L         +  +         L         L     + +    + +    EL     
Sbjct: 145 LKIDLTRQRLLTTVITTLRSYRDLVTLDATNKELDTLYSQQIVANQQIERQQQELIAQNQ 204

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                +++A + N AKS FL +MSHELRTPLNA+LG+++++  E       +     +  
Sbjct: 205 ALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQSFTKE----LET 260

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+R G+HLL LIN++LDLSRI++G+  L+    +  ++++    +   +AQ K ++   +
Sbjct: 261 INRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTKAQHKGLDYQLE 320

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------------S 397
               L   V  DE  +RQV++NLLSNA+KFT   G +   +  T                
Sbjct: 321 WGSDLPHYVRTDEGKLRQVLMNLLSNAIKFTEQ-GHITFRIHQTTVVSKLNEELHLPLTP 379

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  ++D+GPGI+  E+  +   F QG  A    ++G GLGL I+   ++  GG   
Sbjct: 380 HYWLNFEVRDSGPGISVSELENIFHPFIQGEQARSVVDEGTGLGLAISHQFVSLMGGNLS 439

Query: 458 IRSKLREGVEVIAILPNTRV 477
           + S L  G      +P  R 
Sbjct: 440 VSSSLGAGSCFKFSVPVERA 459


>gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 1070

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              +   D   +   +   AKS FLA MSHE+RTPLNAI+G +++ +        ++  +
Sbjct: 414 RQQRKTLDTLTQDLRKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQR----AAEDKEQQ 469

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I  + Q LL++IN+ILD S+IEAG+ ++  +  +L  +V + I +   RAQEK+I
Sbjct: 470 TNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHI 529

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ-YISI 405
           E+ Q I   +  ++  D   ++QV+ NLLSNA+KFT  G   V V     S   Q    +
Sbjct: 530 ELIQHISRDVPLNLIGDPLRIQQVLNNLLSNALKFTEDGLISVSVRCEQVSEDIQLEFEV 589

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD+G G++      +   F QG   I     G GLGL I + + A  GG+  + S+L +G
Sbjct: 590 KDSGVGLSSAHQALLFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVESQLGKG 649

Query: 466 VEVIAI 471
                 
Sbjct: 650 SIFHFT 655


>gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 531

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263
           ++   +  + +L+A +  ++ +S+E R +AE           N AK+RFLA++SHELRTP
Sbjct: 201 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 260

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILGFS+V+  E  G L N+  +EY+  IH+SG HLL+++N +LD+S+IEAGRYEL  
Sbjct: 261 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 320

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               + + +  C  ML  +A+EK + +  ++  S+  + AD++  +Q+++NL+ NA+KFT
Sbjct: 321 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 380

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V      G    +++ D G GIA  ++  +   F Q         +G GLGL 
Sbjct: 381 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 439

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + + +   HGG   IRS   EG  ++  +P
Sbjct: 440 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469


>gi|298249772|ref|ZP_06973576.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297547776|gb|EFH81643.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 569

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 159/458 (34%), Gaps = 42/458 (9%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L+ A +   F    +F +W+          +                       L+  + 
Sbjct: 91  LMAACVLVIFLLEMVFLVWTPFPSLSGLNAIIWSDYADRFRSTDVAHAPAT--SLIIDVF 148

Query: 117 IGLCWTLLTLVEPGTW-----------TPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           +  C     L                       +  +  ++    +  LS F+L  + F 
Sbjct: 149 LSFCSAGFFLFLRAAIRVLQAWNRLRKQHLSWALTHAIMMIPMFGVGVLSLFILFASAFS 208

Query: 166 SFFPVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-------- 215
              P  + L       +S   +   L  +L   L F  +    + +    ++        
Sbjct: 209 YSKPENLPLYLFLNLFLSGAAIAAILVFVLPPVLLFSNFFARRITQRIETLVSAASAMRA 268

Query: 216 ----------------SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                             Q + + + A LE       E R    +    +   +AS+SHE
Sbjct: 269 GNYSIRIPVQGEDEVARLQNDFNAMAAHLEETLHELQEERDNVAQLLNERRELVASVSHE 328

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTP+  + G+ E         +     ++ +  I++    L  LI+++  L+R E G+ 
Sbjct: 329 LRTPVATMRGYLESTLAN-WNEVPPTMLRQDLNVINQQTVRLQGLIDDLFALARAEVGKL 387

Query: 320 ELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
           +L  +   +  +++  + +L   A +   +EI   +  +L     DE  + Q++ NLL+N
Sbjct: 388 KLRCAPSHVDVLIQRLVDVLAPLAWRGSRVEIIADVAANLPQALVDEARLEQILQNLLNN 447

Query: 379 AVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
            V+ T  GG + V+     +     + IKD G GI   E+  +   F +   + +    G
Sbjct: 448 GVRHTPPGGIISVSAQADLAHEEIVLQIKDTGEGIPAEELSHIWERFYRTEKSREQPASG 507

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            GLGL I + +    GG   + S++  G       P  
Sbjct: 508 TGLGLAIVKEMTEAMGGSVEVESEVGLGTCFTLRFPLA 545


>gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980]
 gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2208

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 18/275 (6%)

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPL 264
            F +++  +  +A    L AE   A S   E       AEE   AKS FLA++SHELRTPL
Sbjct: 1635 FNNSMVDVQRRALAKALEAET-NANSAKAEALHNVKLAEEAAKAKSIFLANVSHELRTPL 1693

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ++G SE++    +     +   E    I  S   LL +IN+ILD S++EA + +L   
Sbjct: 1694 NGVIGNSELLRDSDL----RKDQAEMADSIRVSADLLLTVINDILDFSKMEADKMKLFIV 1749

Query: 325  AISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
            A +  +++RE +  +    + +   +N+EI Q I+     ++ D   + QV+ NL+ N++
Sbjct: 1750 AFNADEMIREVVRSVSYSNRDKRSSRNVEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSL 1809

Query: 381  KFTAIGGRVHV--TVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            KFT   G + V     W +     ++  +KD G GI   ++  +   F Q   +      
Sbjct: 1810 KFT-ENGSITVGAKTDWETKDTVKLTFWVKDTGIGIPRQQLLKLFKPFSQADNSTARRYG 1868

Query: 437  GVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIA 470
            G GLGL I +S++    GGQ  + S   +G  V  
Sbjct: 1869 GSGLGLSICKSLIQSMMGGQIELESVENQGTIVWF 1903


>gi|153813961|ref|ZP_01966629.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756]
 gi|317501489|ref|ZP_07959687.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088039|ref|ZP_08336960.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848357|gb|EDK25275.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756]
 gi|316897118|gb|EFV19191.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408995|gb|EGG88454.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 444

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 6/301 (1%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L++ A+  M V+ I     +  A +   + T  L K   ++   +    D+  EL     
Sbjct: 146 LASTAVSLMPVMGILAVLTILFAFALARWQTNRLIKPINELDLERPLDSDIYEELSPLLE 205

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             D   +  E     +  F A++SHEL+TPL +I G++E+++   + P   E    +   
Sbjct: 206 AMDRQNREKEAVANMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRP---EDISGFSER 262

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I++  + L+ LI +I+ LS+++    EL +  + L ++ RE +  L  +A +KNI I   
Sbjct: 263 IYKEARRLITLIEDIIKLSKLDEESVELEKEDVDLYELTREIVSRLSPQAAQKNIRIELS 322

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +          + + +++ N+  NAVK+    G+V V  G T    + IS+ D G GI 
Sbjct: 323 GES--VHYHGIRQILDEMVYNVCENAVKYNYENGKVSVWAGNTLNGPK-ISVSDTGIGIP 379

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +     +   F +   +      G GLGL I +     HG +  + S+   G ++    P
Sbjct: 380 KEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGALLHGAKVSVESEEGRGTKISMQFP 439

Query: 474 N 474
            
Sbjct: 440 R 440


>gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1248

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/257 (33%), Positives = 152/257 (59%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      ++ AE  N  K+ FLA +SHE+RTPLNAI+GF++++  E  GP+
Sbjct: 990  RDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADMMATERFGPI 1049

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG+ ++   A+ L + V E + ++Q +
Sbjct: 1050 GHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQPQ 1109

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  S+  + AD + ++Q++LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1110 ANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSVA 1169

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + I+D G G+   E+   +  F Q + + K     G GLGLP+ ++++  +   F I S 
Sbjct: 1170 LRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITST 1229

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1230 PNEGTLVEITFPSQRVL 1246


>gi|307152684|ref|YP_003888068.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982912|gb|ADN14793.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 584

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 135/270 (50%), Gaps = 4/270 (1%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L +    + +   E+  +  E         E R+ AE+ N  K  F+  +SHELRTPL 
Sbjct: 172 QLIEVAQSLTAIAIERQKMDEERNQLLLKEREARQEAEQLNRIKDEFVMMLSHELRTPLT 231

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILG+S++++   +   N+   ++ I  I R+ +    LI+++LD+++I   +++L +  
Sbjct: 232 AILGWSQLLKKRLIHEQNS--CQKAIETIERNAKLESQLIDDLLDITKILTDKFKLKKDI 289

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L  +++  +  L L A+ K I I   I+     V  DE+ ++Q+  NL+SN++KFT  
Sbjct: 290 VYLESLIKLTVDSLLLTAEAKEIPINIMIESPKLKVLGDERRLQQIFWNLVSNSIKFTEA 349

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG + + +     +   I+I D G GI    +P V   F Q   + +    G+G+GL I 
Sbjct: 350 GGLITIKLQREQEQ-AKITITDTGIGIKPALLPFVFDRFWQADSSSQRMAGGLGIGLSIV 408

Query: 446 QSIMANHGGQFLIRS-KLREGVEVIAILPN 474
             ++  H GQ +  S    +G     +LP 
Sbjct: 409 HRLVELHQGQVIAESLGEGKGATFTVLLPL 438


>gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199]
 gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199]
          Length = 414

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/230 (40%), Positives = 130/230 (56%), Gaps = 1/230 (0%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           +K+RFLA+MSHELRTPLNAI+G SE+I  E  G + +  Y EY  DI+ SG HLL+LIN+
Sbjct: 183 SKTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATDINDSGLHLLDLIND 242

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILD SR+E G+  L +  I + D++ +    +    +E+++    ++  S   + AD + 
Sbjct: 243 ILDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGS-PILTADRRA 301

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           MRQ++LNLLSNAVK T  GGRV +T       G  I ++D G GI    +  +   F   
Sbjct: 302 MRQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVD 361

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
                + + G GLGL I + ++  HGGQ  I S    G  V    P  RV
Sbjct: 362 EEISVTRQGGAGLGLAITKRLVERHGGQISIDSSEGFGTSVRLSFPPGRV 411


>gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 354

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 33/359 (9%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV---------LDIS 188
             +   ++L  +++ ++       A F     +  A+ T+     H              
Sbjct: 4   LWFVFKSILTVIAVMSIICLFWSAAYF-----ITEAIYTRFAWQPHPLVRQIISSIFGFL 58

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE------------LEVAKSLSD 236
           L GM  +A+  F      +F  ++     +  K D                 E+   ++D
Sbjct: 59  LFGMTMSAIGPFLRKRERVFWHHLIDAINRIAKGDFRVNLQVDWGGRHHPFAELVTRIND 118

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                 +     +  F++++SHE+ +PL +I GF+  ++ E +   + E    Y+  I  
Sbjct: 119 MA-ANLQAMEDMRQEFISNVSHEIGSPLTSIRGFARALKNENL---SQEQRMHYLDIIET 174

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               L  L   +L L+ +++ RY L  ++  L   ++  I+  + +  EK++++   ++ 
Sbjct: 175 ECVRLSKLSENLLRLAMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEK 234

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
              S+ ADE  + QV LNL+ NA+KFT  GG + V V     +   ++I D GPGI + +
Sbjct: 235 --VSITADEDLLSQVWLNLIHNAIKFTPKGGTITVQVQRRGEQ-AIVTISDTGPGIPKHD 291

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            P +   F +   +   A  G GLGL IA+ I+  H G   ++S+  EG      LP  
Sbjct: 292 QPRIFERFYKVDKSRHRAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELPIR 350


>gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 667

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AK++F++++SHELRTPL +I  F E +  E    ++ E   +Y+   +R    L  
Sbjct: 402 ELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSPEERLDYLEIANRETDRLTR 460

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+ +    A+ +  ++ + +    L+A++K I++ + +DP L  VW 
Sbjct: 461 LVNDVLDLSRLESGK-QYHFEAVDIAAVIEQTLRTHHLQARDKGIQLRKFVDPDLPLVWG 519

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIP 418
           +   + QV+ NLL NA+KFT  GG V V          S +   +++ D G GIA  +  
Sbjct: 520 NYDLLLQVMTNLLGNALKFTPSGGLVTVHAHPVVQADGSPQAVRVAVADTGIGIAPEDQE 579

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F +         +G GLGL I ++I+  H  +  + SKL +G      L
Sbjct: 580 RIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHHTRICLESKLEQGSTFWFDL 632


>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
 gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 952

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 168/435 (38%), Gaps = 34/435 (7%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T            L  +     +           LL  
Sbjct: 286 VLVHAYSWKTIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYRRA--QRLLES 343

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + +             +N ML  +   S  P+   
Sbjct: 344 EVLNRAILRTAPVGLGLLSAHDGSVLLQ-------------NNAMLELSARTSGEPLPNR 390

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAE 227
           L      +    +     +L   L+     +  ++ ++NV     +     L     I+ 
Sbjct: 391 LWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISM 450

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + ++    E R  +++ N AKS FLA+MSHE+RTPLNAI+G  E++    +        
Sbjct: 451 RKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQ 506

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K 
Sbjct: 507 SERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKG 566

Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY 402
           +++   +   ++  +  D   +RQ++ NL+ NA+KFT   G + V V             
Sbjct: 567 LQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIE 625

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI    I T+   + Q   +I     G GLGLP+ + +    GG   + S  
Sbjct: 626 IWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLP 685

Query: 463 REGVEVIAILPNTRV 477
             G  V  +LP    
Sbjct: 686 DFGTTVTVVLPLREA 700


>gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8]
 gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8]
          Length = 489

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                +  +R +  +  K+ F+A++SHELRTPL AI  ++E I    +G L+  T KE++
Sbjct: 234 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 292

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I     HL NL+NE+LD SR+E    +++   + L D+V   +  ++  A   N+ + 
Sbjct: 293 EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 352

Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407
            + + P     + D   +RQV+LNLL+N VK++        V V +      G  I ++D
Sbjct: 353 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 411

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F +   ++     G GLGL I + I+  HGG+  + S++ +G  
Sbjct: 412 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 471

Query: 468 VIAILPNTRVLN 479
               +P  R   
Sbjct: 472 FFVWIPKDRAGE 483


>gi|154252774|ref|YP_001413598.1| integral membrane sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156724|gb|ABS63941.1| integral membrane sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 591

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 170/429 (39%), Gaps = 15/429 (3%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLIT-LAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
           + +   ++A +   +       +W                          GE + + +  
Sbjct: 32  IGVVTAVMALLVYVWPGEVWPFVWYAAMCAFSGGLAALAWYYTHRRPADEGEAHPYGLAH 91

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFP 169
                 +G+ W    L   G  T ++  +   +  L   ++ A+S+  +LP + F+S + 
Sbjct: 92  TGLTTLVGITWG---LGAFGAATGDFHHLLVYSLALGGTALGAVSSQHVLPRSCFVSLWT 148

Query: 170 VVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            V  L    I         ++ GM+       + +T  + +     +      D  +AE+
Sbjct: 149 SVPLLGLAHIFHDPGFFGATIFGMIMLYAGVLSILTVRMLRFMRTNVDLTRSLDAKLAEI 208

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
               +  +E R  A E NL+KSRFLA  SH+LR P++AI  F+  +    +        +
Sbjct: 209 TEMAAELEEARHEAVEANLSKSRFLAHASHDLRQPIHAIGLFTACLRDLDLET----EAR 264

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  I  + + +  L+  +LD+SR++ G  E      +L + +R  I      A++   
Sbjct: 265 QHVRSIDDAARSVSRLLGSLLDISRLDVGGVEPQPERFALEEFLRGIIRQNADAARDGGG 324

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I  +       V  D      +I N++SNA+K+   G  V + V    G    + I D+
Sbjct: 325 TIEMETRD--IWVNTDPALFSTMIQNIVSNALKYAP-GSNVRIVVRR-EGGRAVLEISDD 380

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGIAE ++  +   F +          G+GLGL I + +    G +  I S    G  +
Sbjct: 381 GPGIAEQDLRHIFDEFYRAEGGDAPKPDGLGLGLAIVRRLAGLLGLEVEIASAAGRGTTL 440

Query: 469 IAI-LPNTR 476
               LP + 
Sbjct: 441 RISGLPLSE 449


>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 918

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 128/272 (47%), Gaps = 14/272 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      ++ AE  N AKS FLA+MSHE+RTPLN ILG  +++E        +
Sbjct: 521 ITERKREEKELLLAKEHAEAANRAKSEFLANMSHEIRTPLNGILGMLQLLETSV----QD 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   ++     +S   L +L+++ILDLSR+EA    +     +L   + + I +    A 
Sbjct: 577 KEELQFCALAIQSTNRLTSLLSDILDLSRVEASMMLIRSERFNLHSALTQTIDLFGPVAV 636

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +  + +   +DP L   V  D   ++QV+ NL+ N+ KFT   G VHV       R    
Sbjct: 637 QTGVTLTAHLDPGLPIWVVGDSIRLQQVLTNLIGNSFKFTKR-GHVHVEAYPLPSRSIDT 695

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              + +I+D G GIAE +I  +   F Q S       QG GLGL I++ ++A  GG   +
Sbjct: 696 LRVFFAIEDTGCGIAEKDIGNLFQPFTQVSQGYNRNHQGAGLGLTISKQLVALMGGNMAV 755

Query: 459 RSKLREGVE--VIAILPNTRVLNFIPEDNHES 488
            S+   G          +  V     E   ES
Sbjct: 756 ESEEGVGTTFAFCVTF-SKEVQPHDDEAAPES 786


>gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 591

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP++ I G++E +    +   + +  + +I  IH   + L  LI ++
Sbjct: 365 RRDFVANVSHELRTPVSVIQGYAETLLAGAL-ESDPDRARRFIQVIHNHAERLSALIADL 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS +E+G+  L    ++L   V++ + +L  RA +K I +      +   V AD+  +
Sbjct: 424 LTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVLADKGKL 483

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NLL NA+K+T   G+V VT          IS+ D G GI   ++P +   F +  
Sbjct: 484 DQVLVNLLDNAIKYTPGNGKVTVTAE-DEAEMLKISVTDTGLGIPAKDLPRIFERFYRVD 542

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A    + G GLGL I + I+ +HGG   ++S   EG      L
Sbjct: 543 EARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTL 586


>gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
 gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis]
 gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
          Length = 857

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGL 575

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    + + ++ V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721


>gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 936

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 8/265 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           LS  A     I E   ++ +  E + +AE    +KSRF+A++SHE+RTPLNA++G ++++
Sbjct: 378 LSSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSADIL 437

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +          Y   I  S   LL++++++L  SR EA    L     S+   + E
Sbjct: 438 HHTGLTS----EQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTCIEE 493

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVT 392
            I ++   A +K +E+     P +   V  D   +RQ+++NLL+NA+KFT  G   V V 
Sbjct: 494 AIDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHGVITVTVR 553

Query: 393 VGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                G     ++S+KD G GIA+ +I ++   F Q   +I     G GLGL I + I  
Sbjct: 554 CTHIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICKQICD 613

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
             GG   + S+L +G E I   P  
Sbjct: 614 VVGGDISVSSELNKGSEFIVNYPLQ 638


>gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
 gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
          Length = 2319

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  KS F+A++SHELRTP+ +I G+ E++ L   G L     + ++  +  + + L  L+
Sbjct: 2085 DRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELT-PQQRHFLEIVKNNTERLGVLV 2143

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIML--QLRAQEKNIEIFQKIDPSLSSVWA 363
            N++LDLSRIE+G+  L+ + ++L  +  E +  +  + + +EK +    +++ +L +V  
Sbjct: 2144 NDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEVEENLPTVRG 2203

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            DE+ +RQVI NL+ N   +T   G V V +   +     + ++D+G GI+  +   +   
Sbjct: 2204 DEERIRQVITNLVVNGYNYTPENGHVWVRIFR-NDGEVQVDVQDDGIGISIEDQERIFER 2262

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAILPNTRV 477
            F +G   +     G GLGL +A++I+  H G+   +S     EG      LP   V
Sbjct: 2263 FYRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSSGIRGEGSTFSFTLPLNPV 2318


>gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1194

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 3/283 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L  + +        L ++NV++       +   ++L  A+        R E+ +  KS F
Sbjct: 433 LMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAARLEQSSRYKSEF 492

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   LL LIN+ILDLS
Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRAGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +S+   ++    M +  A  + + +  +  P    +  +D + + Q+
Sbjct: 552 KVEAGQVTVELETVSIDATLQALEEMFKPMAAARQLRLAFERLPGTPDTFISDGQRVTQI 611

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNAVKFT   G V ++V    G    I ++D+G GIA  ++  +  +F Q   + 
Sbjct: 612 LRNLLSNAVKFT-EHGEVALSVAPAEGGMLRIDVRDSGIGIAPDKLDMIFEAFQQADGST 670

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++      GG+  + S++ +G      LP 
Sbjct: 671 SRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713


>gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 634

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 115/483 (23%), Positives = 206/483 (42%), Gaps = 36/483 (7%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM---------WSLITLAVYAANLS 88
           +   + +  RV+    L  L  A I  +  Q    P+           +      A   +
Sbjct: 129 LEAALSASRRVAAFASLLALSCAGILIFVGQLGWLPLDAPGAAERSLLMAFGVASATLYA 188

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
            G       +    V +        ++       +  ++           I  +A  ++ 
Sbjct: 189 AGLAFGAESLARTGVALLSREEERYRLLAR---NMSDVISRHRRNGAVQFISPAAEAMLG 245

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------------LATA 196
           + ++ L    L   V ++  P  +  +       +V  +                     
Sbjct: 246 MPVAQLHGHGLFDRVHVADRPAYLT-ALSDAARGNVRSVEFRLRREPTGSERGQVDFIWV 304

Query: 197 LSFFTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
                 +   L + ++     +          + + ++++   D+ R  AE  + AK+RF
Sbjct: 305 EMRCRPLDQDLGRQDIDRDVARETEVVAVMRDVTDRKLSEQALDQARSAAEAADAAKTRF 364

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLNAI+GFS++I  E    L     KEY   I+ SGQHLL+++N ILD+S
Sbjct: 365 LATMSHELRTPLNAIIGFSDMIAQEQALMLGAAQRKEYAQVINDSGQHLLSVVNGILDMS 424

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           ++E+G +E++    +    +  C  +L L+A+E  I++       L  +  D +  +Q++
Sbjct: 425 KMESGNFEIASEPFAPRASLMHCCNLLALKARENGIDLITDAPQDLPVMTGDPRAFKQIV 484

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNL++NA+KFT  GG+V V+    SG    + I D G GIA  ++  +   F Q     +
Sbjct: 485 LNLVANAIKFTERGGQVSVSAA-VSGSHLTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQ 543

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN------TRVLNFIPEDNH 486
              +G GLGL I +S++A H G   ++S+L EG  V   LP        +  + +P ++ 
Sbjct: 544 RRHEGTGLGLSIVKSLVALHLGDLTVQSRLGEGTAVTVKLPLVYTSPQAKPADRMPAESK 603

Query: 487 EST 489
            +T
Sbjct: 604 IAT 606


>gi|332993865|gb|AEF03920.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 798

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 8/253 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L+ +     +L    +++AE  +  K+ F++++SHE+RTPLNAI+GF +V+       L 
Sbjct: 406 LLKKARKTNALYISAKEKAELHSRLKTEFISNISHEIRTPLNAIIGFGQVLTD----KLE 461

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           ++  K+    I  S + LL LIN++LD S+IEAG+  L     +L   +R+ + +   +A
Sbjct: 462 DKQTKKLTSQIVNSSEMLLQLINDLLDFSKIEAGKLALDYGPYNLRQSIRKLLDIFHAQA 521

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401
             K + I   ID  L   +  DE  ++QV+ NL+SNA+KF++ G   + + V        
Sbjct: 522 SNKGLTIKLNIDKELPKEMIFDELRLKQVLANLISNAIKFSSAGDIEIGIKVKQKDNTHC 581

Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++DNG GI+E +   +   F Q   +      G GLGL I   ++     +  + 
Sbjct: 582 LFDVWVQDNGIGISESQQENLFQPFIQAESSTARKYGGSGLGLNICNKLLEQMSSKLHVV 641

Query: 460 SKLREGVEVIAIL 472
           S + +G      L
Sbjct: 642 SAIGQGSRFYFTL 654


>gi|330965367|gb|EGH65627.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 641

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/394 (24%), Positives = 157/394 (39%), Gaps = 27/394 (6%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +   +                    +G    +L  +    +      I   A +L   +
Sbjct: 119 IRHQRTAGHTAPAARRETQDAASPDYLGR---VLVGMSSEAFNRRQQEILLKAGILALCA 175

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           +          ++ LS     +  + +AI   H        M  +  +    +  H+   
Sbjct: 176 LLFTFLLARRLSLSLSRPISDMGEALKAIQQGH----YHTPMPVSDDAELGALARHINSL 231

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +     E        + + +   +TR+ AE  N AKS FLA MSHELRTP+N +LG 
Sbjct: 232 AENLHRTSLE-------QQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGM 284

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +++E   M     +   EY      S +HLL +IN+ILD SRIE    ++   A +L +
Sbjct: 285 LQLMETTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAE 340

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           +V          A ++ + +   + P L   +V  D   +RQ+++NL+ NA+KFT   GR
Sbjct: 341 LVSASTHAFNHSALQRKLLLELHVQPGLEAITVIGDPTRIRQILVNLIGNALKFTEE-GR 399

Query: 389 VHVTVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V +   W          +  + D+G GI    + ++  +F Q   +I     G GLGLPI
Sbjct: 400 VCIEADWVMLEDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPI 459

Query: 445 AQSIMANHGGQFLIRSKLREGVEVI--AILPNTR 476
           A+ +    GG     S    G        LP +R
Sbjct: 460 ARKLAERMGGTLCAESVEGAGSAFTLQIALPVSR 493


>gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
 gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
          Length = 857

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 145/293 (49%), Gaps = 16/293 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
           G++ + +S   L ++V     + +    +K I +  + + + ++ V +D+  + Q++ NL
Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIALVVESNITSATLVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
               G GLGL I  S++    GQ  + S+   G      LP   V +   P+ 
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715


>gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 823

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEYI--- 291
           AE E +  K+ F++++SHELRTPL ++LGF+++I+ +           ++      +   
Sbjct: 334 AEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKINRAVNQV 393

Query: 292 ----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
                 I   G  L NLIN++LD++++EAG+ E     +S+  +V   I         K 
Sbjct: 394 ASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATTSLFNNKP 453

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I++   +  +L  +  D   + QV +NL+SNAVKFT   G V + +         +S+KD
Sbjct: 454 IKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTET-GNVTLKLMAVKS-AIKVSVKD 511

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   V   F Q    + +  QG GLGLPI Q I+ +HGG   + S++  G  
Sbjct: 512 TGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVESQVGVGST 571

Query: 468 VIAILPN 474
               LP 
Sbjct: 572 FYFTLPL 578


>gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 781

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +      R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM----TIADNA 453

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 627 GSTFRFTIP 635


>gi|81427691|ref|YP_394689.1| two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104603|gb|AAD10264.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609331|emb|CAI54377.1| Two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 632

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 25/254 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E +        + E    ++         ++ +I
Sbjct: 372 EREQREFVSNVSHELRTPLTSVRSYIEALNDGAW--QDPEVAPNFLKVTQEETDRMIRMI 429

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---------------- 349
           N++L LSR++ G  +++   ++L +     +    +  +                     
Sbjct: 430 NDLLSLSRMDQGTAKMNLEFVNLNEFFGYVLDRFDMMIKRDQEHDNNASPRGTGKLPTDD 489

Query: 350 ------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 I +        V  D     QV+ N+++NA+K++  GG +   +  T  R   +
Sbjct: 490 PNKKYSITRDFTKRDLWVEIDTDKFMQVVDNIMNNAIKYSPDGGVITCRLLETH-RHVIL 548

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SI D G GI   ++  +   F +   A    + G GLGL I++ ++  H G+  + S+  
Sbjct: 549 SISDQGLGIPRKDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVIEAHNGRVWVDSQEG 608

Query: 464 EGVEVIAILPNTRV 477
           +G      LP   +
Sbjct: 609 KGSTFYISLPYEPI 622


>gi|298486528|ref|ZP_07004588.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159005|gb|EFI00066.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 645

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNRSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1166

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 171/423 (40%), Gaps = 28/423 (6%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +    +  +G+    R  + V  +          L      +   L I     +L  + 
Sbjct: 427 DRFRLGESLVGQAARSRRTIEVDGVPADYVSISSGLGRATPGSLIVLPIVVDDQILGVIE 486

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------IT 204
           +++ + F   +  FL      V  +   I++    D  L      A              
Sbjct: 487 LASFTPFTPIHRDFLEQLMETVGGNVNTIVANARTDELLGESQRLASELQARSEELQVQQ 546

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
             L +SN ++    A       ++E      ++ R+  E+        +  KS FLA+MS
Sbjct: 547 EELQRSNAELEEKAALLAAQNRDIEGKNLEIEQARQELEDRAHQLSLASKYKSEFLANMS 606

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG
Sbjct: 607 HELRTPLNSLLILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEAG 665

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + +++   ++L  ++       +    +K+++      P +   +  D+  +RQV+ NL+
Sbjct: 666 KMDINPERVALAQLLDYVDATFRPLTTQKSLDFTIHTAPGVPVDLLTDDSRLRQVLRNLI 725

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFG 425
           SNAVKFT   G V V +   +                  ++D G GI E ++  +  +F 
Sbjct: 726 SNAVKFTER-GSVRVRIEPATDGELPASVHRGGAVVAFRVEDTGIGIPEQQLEAIFGAFQ 784

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484
           Q          G GLGL I++ I    GG    RS    G      LP  R   +  P+ 
Sbjct: 785 QADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFTLYLPVARADFHDTPDS 844

Query: 485 NHE 487
            HE
Sbjct: 845 GHE 847


>gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23]
          Length = 1403

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 14/247 (5%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
              KS+FLA+MSHE+RTP+  +LG +E++    +    +E  ++YI +I  S   LL +IN
Sbjct: 820  RLKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYIDNIQSSATSLLTVIN 875

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVWA 363
            +ILD S++E+GR ++ E   SL  +V+E + ML+   + KN++    I   +     V  
Sbjct: 876  DILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIG 935

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419
            D   +RQ+I NLL+N++KFT   G V  +V   S           ++D G GI E     
Sbjct: 936  DPGRVRQIITNLLTNSIKFTNQ-GYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKR 994

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   F QG  +      G GLGL I ++++    G+ ++ S +  G +    +P  +   
Sbjct: 995  LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNK--P 1052

Query: 480  FIPEDNH 486
              P  +H
Sbjct: 1053 HGPRKSH 1059


>gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 696

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 135/266 (50%), Gaps = 10/266 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           D + ++    K  + E +K AE   E + AK+RFL +MSH++RTP+NAI+GFS+++    
Sbjct: 280 DQICSKKRREKQYAAELKKSAEQAKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL 339

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               N E  +EY+G I  SG  L+ +I+++L+ +RIE+G   L   A +L ++      +
Sbjct: 340 ---KNEEKAREYLGKIKSSGNFLMTIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTV 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   Q K I+     +        D+  ++++ LN++SNA+K+T  G  +HV +  T+ 
Sbjct: 397 FESDIQSKEIQYSIDTNIQHKYAVCDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETAS 456

Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                      +D G G+ +  +P +   F +   A ++   G GLGL I +S +   GG
Sbjct: 457 DDKKAWYVFICEDTGIGMKQEYLPHIFDEFSREHTATENKVVGTGLGLSIVKSFVELMGG 516

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480
           +  + S+  +G +    +P       
Sbjct: 517 KIYVESEQGKGTKFTVEIPLEIASEE 542


>gi|325916989|ref|ZP_08179230.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325536799|gb|EGD08554.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1185

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 139/256 (54%), Gaps = 10/256 (3%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     ++   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++    +  
Sbjct: 785  RMRAQWQVAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTSL----DAR 840

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  ++ + + +++  A++K
Sbjct: 841  QQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDNRDFDLRLLIGQAVELVRPSAEQK 900

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQY 402
             +     +D +L  ++  D   ++Q++LNLL NAVKFT  GG V + V     +  +G  
Sbjct: 901  QLAFECALDDALPPALHGDASRVQQILLNLLFNAVKFTERGG-VQLRVSALPQSPAQGIR 959

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 960  VEVCDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVSVDSE 1019

Query: 462  LREGVEVIAILPNTRV 477
            L +G   +  LP   V
Sbjct: 1020 LGQGACFVVELPLRWV 1035


>gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 1009

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 164/394 (41%), Gaps = 11/394 (2%)

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL--VEPGTWTPEYLTIYKS 142
           A +   + V         +        +     G       L                 +
Sbjct: 354 ALIIASRDVTARRAADDALRESEARHRLLAERTGDVIARADLDGTLRYLSPSVEPVTGYA 413

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA--GMLATALSFF 200
           A  L+  S  A  +      V   +  +V A         + +         L    +  
Sbjct: 414 ADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAKFEYRVRHRHGHDVWLEVNPTVL 473

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 +    V +      +  + AEL  A+  ++  R  AE  + AK+ FLASMSHE+
Sbjct: 474 YDEATGVPLGFVDVARDVTARKAVDAELAAAREQAEAARVHAELASQAKTDFLASMSHEI 533

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL++++G++E++      P   E  +     I  +G  LL ++++ILD S+IEAG+ +
Sbjct: 534 RTPLSSVIGYTELLLD---DPDLTEGQRLQASRIRSAGSALLTVVDDILDFSKIEAGQVD 590

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L     +L  ++   + +++  A+ K +EI   IDP+L  ++  D+  +RQ++LN L+NA
Sbjct: 591 LDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQTLVGDQNRLRQILLNFLNNA 650

Query: 380 VKFTAIGGRV--HVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT  G  V    T G T       +S+ D G GIA  +   +   F Q   +I+    
Sbjct: 651 LKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQARLFKRFTQVDGSIRREFG 710

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G GLGL I++ ++   GG   + S   EG     
Sbjct: 711 GTGLGLAISKKLIELMGGAIGVVSAPGEGSTFWF 744


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NAI+G + ++    +     E  ++++  I +S + LL L+
Sbjct: 267 NQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRAL----TEEQRDFVATIRQSSEALLTLL 322

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N++LD S+IEAGR+E       L   V   + ++ +RA EK +++   + P L  +   D
Sbjct: 323 NDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGD 382

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--------GRGQYISIKDNGPGIAEGE 416
              +RQV+LNL+ NA+KFT  GG V V+V   +              S++D G GI +  
Sbjct: 383 ASRLRQVLLNLVGNALKFTEHGGAV-VSVEGLALGGTEGAADWELTFSVQDTGLGIPDDR 441

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAIL 472
              +   F Q   ++     G GLGL I++ ++   GG   + S+    +G      L
Sbjct: 442 RTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499


>gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
 gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
          Length = 2002

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 13/358 (3%)

Query: 134  PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
            P          L   L+   L          L        L         ++D   A + 
Sbjct: 1637 PNGAVFLFDEGLTYTLAAGELLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALE 1696

Query: 194  ATALSFFTYITYHLFKSNVKILSCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLA 248
                     +     + +V  L        L     I E    +      +K AEE N  
Sbjct: 1697 GEQTDRRIGVGGRTLRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRM 1756

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET------YKEYIGDIHRSGQHLL 302
            KS  LA+MSHE+RTPL +ILGF+E+IE E                 E+ G I +SGQ L+
Sbjct: 1757 KSSLLANMSHEIRTPLTSILGFAEMIEEEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLM 1816

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            + +  +L+LSR+EAG  +L+   + L +  RE    L+ +A+ + + +  +         
Sbjct: 1817 DTLTGVLNLSRLEAGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQ 1876

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            AD  G++ V+ NL+SNA+K+T   G + + V         I ++D+G G+   +I  +  
Sbjct: 1877 ADGGGVQIVLRNLVSNAIKYT-DDGEIRLRVYR-ENGSAMIEVEDSGIGMDPEKIEDLFK 1934

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F Q S  +    +G GLGL + +  +    G   + ++  +G  +   LP       
Sbjct: 1935 PFRQASEGMAREYEGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEESRET 1992


>gi|125972808|ref|YP_001036718.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|256004998|ref|ZP_05429970.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|281417007|ref|ZP_06248027.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|125713033|gb|ABN51525.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|255991067|gb|EEU01177.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|281408409|gb|EFB38667.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|316940955|gb|ADU74989.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 1313]
          Length = 424

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           KS FLA++SHELRTP+N +   +++I         L+ E  +  I    ++   LL L+N
Sbjct: 163 KSIFLANISHELRTPINILYSTTQIINSYLNEDKVLDREKIRSKIAMQQQNCYRLLRLVN 222

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ++D+++I++G +EL  S  +++++V    +++   A+ K + +    D     +  D+ 
Sbjct: 223 NLIDITKIDSGYFELKFSRCNIVEVVENITLLVVEYAKNKGVSLIFDTDVEEKIISCDQN 282

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M ++ILNLLSNA+KFT  GG + V V    G+   IS+KD G GI E ++  +   F Q
Sbjct: 283 AMERIILNLLSNAIKFTPRGGSIKVEVK-DCGKTVAISVKDTGIGIQEDKLEMIFERFKQ 341

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP---- 482
               +    +G G+GL + +S++  HGG+  ++S+   G E    LP        P    
Sbjct: 342 VDNLLTRKNEGSGIGLSLVKSLVELHGGKISVKSEYNRGSEFTVELPADLENGENPSMDA 401

Query: 483 ---EDNHESTQYKCY 494
              ++ +E+ Q+  +
Sbjct: 402 ADRKEENENKQHNVH 416


>gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
           SN2]
          Length = 929

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             K    E     +    AKS FLA MSHE+RTP+NAI+G +++ +   +    NE  K 
Sbjct: 400 KQKRELRELALNLQNATDAKSEFLARMSHEIRTPVNAIVGLTKLTQKSVV----NEEQKT 455

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I +S Q LL +IN++LD S+IEAG+  +      L  +V + I +  + A+EK IE
Sbjct: 456 NLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIESEVFELDKLVEQVIRLHGINAKEKRIE 515

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISI 405
           + Q +   +   V  D   + QV+ NLLSNA+KFT   G V V+V             S+
Sbjct: 516 LLQYVARDVPLQVSGDALRIEQVLNNLLSNAIKFTDE-GMVFVSVNKKYSEHGVLLEFSV 574

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G++  +I ++  +F Q   +I     G GLGL I + +++  GG+  + SKL +G
Sbjct: 575 KDTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSLMGGEIWVESKLGQG 634

Query: 466 VEVIAI 471
                 
Sbjct: 635 ATFFFT 640


>gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 925

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 14/264 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E R RAE  + AK  FL+ MSHE+RTP+NAI+G SE++  E      +
Sbjct: 383 ITERKRMEEDLREARDRAESSSEAKMAFLSHMSHEIRTPMNAIVGLSELLLEEC----PH 438

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +E +  I  +   L+ L+ +ILDLS+IEAGR EL      L +  R    +L + A+
Sbjct: 439 DPQREQLRLIREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAK 498

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K +     + PS       D   +RQV+ NL+ NAVKFT   GRVHVT     G G   
Sbjct: 499 RKGLVFSWDVAPSAQGFFLGDSFRLRQVLWNLVGNAVKFTER-GRVHVTAWGEQGEGGAR 557

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +  ++D G GI    +  +   F QG   +     G GLGL I++ ++   GG+ L+ 
Sbjct: 558 KVHFRVQDTGIGILPVNLERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGEILVA 617

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S+   G      L    VL+  PE
Sbjct: 618 SEPGAGSVFSFSL----VLSPAPE 637


>gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 423

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 137/270 (50%), Gaps = 12/270 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L    E  +        + +E +  K+ F+A+MSHE+RTPLNAI+GF+ ++   T    N
Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +EY   I+++   LL  IN+ILDLS+IE+GR   + S + L DI +E  ++  L+ 
Sbjct: 217 ASEQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
                 ++  +      +W D   + QV+LNLLSNA+KFT+  G + +           +
Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI+E ++ +V   F +         QG GLGLPI + I+   GG+  +RS+L 
Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           +G      LP       + E +  S   +C
Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420


>gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1018

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 13/269 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A       ++ AE  N+AKS FLA+MSHE+RTP+N ++G  E+++   +        ++ 
Sbjct: 488 AFEALTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDN----DQRDL 543

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +     SG  LL +++++LD S+IEAGR EL +  + L  IV   +  +   A  K++ +
Sbjct: 544 VSTTRESGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTL 603

Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYI---SI 405
              +DP L  V  AD   +RQ++ NL  NAVKFTA G   +H+  G T G+G+ I    +
Sbjct: 604 SAFVDPGLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRV 663

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI       +   F Q   +      G GLGL I + ++    G     S+   G
Sbjct: 664 ADTGIGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVG 723

Query: 466 VEVIAILPNTRVLNFIPEDNH---ESTQY 491
                 LP   V   +P +     ++T +
Sbjct: 724 SSFWCRLPL-PVAESVPPETPIGEQTTDF 751


>gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1287

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 27/287 (9%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               + ++    ++   E+ +LI  L+       E        N  K  FLA +SHELR+P
Sbjct: 858  QKGMMQAVCDQIAIAMERVELINSLQRQTEQLTEA-------NRMKDEFLAILSHELRSP 910

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LNAILG++++++   +           +  I R+ +    LI ++LD+SR+  G+  L+ 
Sbjct: 911  LNAILGWAQLLQARRLSEAQTAKG---LETIERNAKAQTQLIEDLLDISRMIRGKLRLNV 967

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLS-SVWADEKGMRQVILNLLSN 378
               +LI I+   I  + L AQ K I++   ++     +L   V  D + ++QVI NLL+N
Sbjct: 968  RTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQQVIWNLLTN 1027

Query: 379  AVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            A+KFT  GG+V V +    G             I + D G GI    +P V   F Q   
Sbjct: 1028 AIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYVFDRFRQADS 1087

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR--EGVEVIAILPN 474
            +I  +  G+GLGL I + ++  HGG   + S     +G      LP 
Sbjct: 1088 SITRSHGGLGLGLAIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1133


>gi|116199517|ref|XP_001225570.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
 gi|88179193|gb|EAQ86661.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
          Length = 2325

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 16/246 (6%)

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            AE+   AKS FLA++SHELRTPLN ++G SE++    +    N+   E    I  S   L
Sbjct: 1820 AEDATKAKSIFLANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSADLL 1875

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357
            L +IN+ILD SR+EA + +L   A +  ++VRE +  +    + +  +KN++I Q I+  
Sbjct: 1876 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLP 1935

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
               ++ D   + QV+ NL+ N++KFT   G + +                 +KD G GI+
Sbjct: 1936 PMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARIDKETKENATLTFWVKDTGIGIS 1994

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470
              ++  +   F Q   +      G GLGL I +S++     G   + S+   G       
Sbjct: 1995 AQQLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMQGTIRLESQEHLGTTAWFTV 2054

Query: 471  ILPNTR 476
                 R
Sbjct: 2055 TFDKAR 2060


>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Bradyrhizobium sp. BTAi1]
          Length = 1299

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 12/387 (3%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
             +  +      + +  ++ +          T ++P     +        ++        
Sbjct: 201 ARALAQEPRDLPFVMIYMMEESGNQARLAAFTGIDPTHPAVQQSLSIGRDSMWPLAEALR 260

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L   +L   +  SF     +             + L  + +  +    ++   L    + 
Sbjct: 261 LQAPVLVRDLRRSFGVDFPSGG---WRQPPKQAVVLPILASGEVGESGFVIAGLNPFRLY 317

Query: 214 ILSCQAEKDDLIAELEVA--KSLSDET-RKRAEEE---NLAKSRFLASMSHELRTPLNAI 267
             S     + +  ++  A    L+ E  R+RAE     + AK+ F +++SHE RTPL  +
Sbjct: 318 DESYARFLNLVSGQIAAAAGNGLAYEAERRRAEALAEIDRAKTTFFSNISHEFRTPLTLM 377

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           L   E +       L  E     +  IHR+G  LL L+N +LD SRIEAGR   S   + 
Sbjct: 378 LSPLEDMLARADAGLGAEQLA-MLNLIHRNGIRLLKLVNTLLDFSRIEAGRMTASFEPVD 436

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L  +  E +   +       + +  +  P    V+ D     +++LNLLSNA KFT  GG
Sbjct: 437 LAALTSELVSNFRSATDRAGLRLAIEAAPLPQPVYVDRDLWEKIVLNLLSNAFKFTFDGG 496

Query: 388 RVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            + VT+G  +  R    ++ D G GI   E+P +   F + + A   + +G G+GL + Q
Sbjct: 497 -ISVTIGIAADMRHAEFAVHDTGTGIPPDELPHLFERFRRVAGARGRSYEGSGIGLALVQ 555

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            ++  HGG+    S+L  G      LP
Sbjct: 556 ELVKLHGGEITADSELGRGSVFTVRLP 582



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 31/357 (8%)

Query: 126  LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF----FPVVVALSTQAIMS 181
            L      +  +  +      L+  + ++L     P            P          + 
Sbjct: 799  LRTIFEASYTFQALLSGEGTLLDANATSLDAIAAPLDKVAGRPFWDTPWFTGTPGMPELI 858

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              ++DI + G +A                + ++   + E   L A +  A  L++  R++
Sbjct: 859  KSLVDIVIHGEVARREIQLDLPVGGRRWFDFQMRPVRDEAGQLAAIVPEAVELTE--RRQ 916

Query: 242  AEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            AEE         A  +    ++H+    L  I   ++++    + P   E  + Y+  I 
Sbjct: 917  AEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRQLPP---ERMRRYVDAIS 973

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
             +      L  ++L  +R    R  +          + +   MLQ       + I   + 
Sbjct: 974  DTADRAAKLTGQLLAFAR----RTPMERQVFDAARHLEQIAEMLQTVLGAPAV-IALDLR 1028

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDN 408
                 V  D       ++NL++NA       G + +        G         I++ D 
Sbjct: 1029 ARPLPVDVDINQFDTALVNLVANARDAMDGRGVLTIRGERVDHGGPTAPEQFVSIAVSDT 1088

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            G GI   ++  +   F       K   +G GLGL      +   GG+ L  S++  G
Sbjct: 1089 GCGIPPEQLDRIFEPFF----TTKGVGRGTGLGLSQVYGFVHQSGGRVLTDSEVGRG 1141


>gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 445

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 3/227 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS + + +SHELRT L  ILG S++++ E  GPL NE  KEY+  I  SG+HLL L+N+ 
Sbjct: 212 KSDYFSHVSHELRTTLAGILGLSKMLKQELYGPL-NEKQKEYVNGIRVSGEHLLALVNDF 270

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS+IEA + EL    +++ DI    I ++Q +A E+NI+I  K+   +     D++ +
Sbjct: 271 LDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQNIDIILKVSEQVDFCTVDQRKI 330

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+++NL+SNA+KFT   G V + V           + D G GI E +   +   F Q  
Sbjct: 331 KQILINLMSNAIKFTEE-GSVTLQVEKV-DNWLKFCVIDTGIGIKEEDQKKLFQPFQQIH 388

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +    +G GLGL +++ +   H G+  + S+  +G      LP  
Sbjct: 389 SKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGSCFTLELPLK 435


>gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 581

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+A++SHEL+TPL +I GF E +        ++  Y  ++G I +    +  LINE+
Sbjct: 358 RTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKY--FLGIIKQETDRMTRLINEL 415

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L  S IE    E+ +  + +I+++ + + +LQ    EK  ++  K+  +++ + ++E  +
Sbjct: 416 LYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLPENIAHILSNEDSL 475

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+++NLL NA+K+T  GG + + V  T      I++ DNG GIAE E+  +   F +  
Sbjct: 476 LQIMINLLDNAIKYTPEGGTISIMVEETLEN-VLITVADNGIGIAEDELDRIFERFYRVD 534

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            A      G GLGL + + ++    G   + S+L +G      +P 
Sbjct: 535 RARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIPK 580


>gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 591

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           L LSRIE      +   + + D++ + +  +   A EKNI++          +   +   
Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTVPPVIIETNRDQ 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPTKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 622

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   +  F++++SHELRTPL ++  + E +        + E   +++  +    + ++
Sbjct: 372 QKEEQERKEFVSNVSHELRTPLTSVKSYVEALSDGAW--QDKEIAPQFLKVVQDETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356
            +IN++L LSR++AG  +L+   +++ ++    +    +  +++         I +    
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKKYTIERFFTK 489

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   +
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITARLLETHNH-VIMSISDQGLGIPRKD 548

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 549 LSHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGSTFYISLP 605


>gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1410

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 150/257 (58%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      ++ AE  N  K+ FLA +SHE+RTPLNAI+GF++++  E  GP+
Sbjct: 1152 RDITQWKRTEEELRSAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPI 1211

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L   A+ L + V E + ++Q +
Sbjct: 1212 GHGRYAEYAADIGRSGRHVLDIVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQ 1271

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  S+ +V AD + ++Q++LN+LSNA++FT  GG++ V+  +       
Sbjct: 1272 ANGQRVIIRTALSQSVPNVVADMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVT 1331

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + I+D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I+S 
Sbjct: 1332 LRIRDTGIGMTRAELEQAMKPFRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQST 1391

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1392 PNEGTLVEITFPSPRVL 1408


>gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1334

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/410 (23%), Positives = 161/410 (39%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            ++      +G+    R  + V ++          L          L I     +L  + +
Sbjct: 600  RIAFGRTLVGQAARSRRTITVDELPPDYVTISSGLGHVVPTALVLLPIVVEGQVLGVIEL 659

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITY 205
            ++++ F   +  FL+     + ++   I++    D  L       +      +       
Sbjct: 660  ASVTPFTQIHQDFLAQLMETIGVNVNTIVANARTDELLVESQRLTVELQERSAELQTQQE 719

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L  SN ++    A       ++E      ++ R+  E         +  KS FLA+MSH
Sbjct: 720  ELQHSNAELEDKAALLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN+ L     +  +      +    EY   IH +G  LL LIN+ILDLS++EAG+
Sbjct: 780  ELRTPLNS-LLILAQLLAQNPSRNLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGK 838

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             ++S   + L  ++       +    +K+++      P   + +  D+  +RQV+ NLLS
Sbjct: 839  MDVSPERVELRRLIEYVEATFRPMTMQKSLDFTVTTAPGAPADLLTDDSRLRQVLRNLLS 898

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT   G V + +                      ++D G GI E  +  +  +F Q
Sbjct: 899  NAVKFTER-GEVRLRIEPAPDDEVPSGVLRGGPVVAFRVQDTGVGIPEQHLEAIFGAFQQ 957

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I + I    GG   + S   +G      LP  R
Sbjct: 958  ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSVAGQGSTFTLFLPVAR 1007


>gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 709

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 10/254 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E    I   +  +      +++AEE +  KS FLA+MSHE+RTPLNAI+GFS ++     
Sbjct: 321 ELATDITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAE--- 377

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              +++  + Y+  +  + + LLNLI++ILD+S+IEAG  EL  + + +  + RE I   
Sbjct: 378 --ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTC 435

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +  E+ + +          V AD+  + QV+ N ++NA+KFT   G V ++       
Sbjct: 436 SHKKHEEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTK-GSVTLSYRLEDDG 494

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +  + D G GI   +   + + F +      S  QG GLGL I QS++   GGQ  + 
Sbjct: 495 LLHFCVTDTGKGIPAEQQHEIFSRFVKLD----SFSQGAGLGLSICQSLVERMGGQIGVN 550

Query: 460 SKLREGVEVIAILP 473
           S+  EG       P
Sbjct: 551 SREGEGSCFWFTHP 564


>gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1228

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 14/269 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     A+    + R  AE  NLAKS FLA+M+HELRTPLNA++G + ++    +     
Sbjct: 554 ITAFRRAEQALSQARTEAETANLAKSDFLANMTHELRTPLNAVIGLARLLTESPLNAW-- 611

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y   I  S Q L  LIN+ILDLS++EA +  + +   SL  ++R    +L +   
Sbjct: 612 --QRDYADKIALSAQSLQVLINDILDLSKMEANQLRIEQIPFSLNLLLRTAASVLGVGVG 669

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           +K I +   + P +  ++  D   ++Q++LNL+SNA+KFT   G + V+V   S      
Sbjct: 670 QKAIAVVLDLAPDVPDALVGDPLRVQQILLNLISNALKFTER-GEIVVSVRCQSMMPVAA 728

Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I+++D G GIA   + T+  +F Q   +      G GLGL I+  ++   GGQ
Sbjct: 729 GAPILLQIAVRDTGIGIAVAALETIFNAFIQADASTSRLYGGTGLGLTISNRLVTMMGGQ 788

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPED 484
             + S   +G E    LP T  +   P+D
Sbjct: 789 ISVDSTPGQGSEFRFSLPLTAGVPVRPDD 817


>gi|313672134|ref|YP_004050245.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938890|gb|ADR18082.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 834

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 140/276 (50%), Gaps = 9/276 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   +    + +  D   +L+      +E + + EE N+AKS FLA +SHELRTPLN 
Sbjct: 434 VERDCTERKRIEQQLLDYNEKLKENNRALNELKTKEEEANIAKSNFLAIISHELRTPLNG 493

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG  E+I        + E + E+   I  SG+ L  LIN+I DL+++E G+ EL E   
Sbjct: 494 VLGLLELIHK------DPERFNEFFPVILSSGEQLRVLINDISDLTKVEQGKLELVEKRF 547

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           S+ + + E +   +++ Q+ N+E+   I+     +  D   +RQV+ NL++NA+K+T  G
Sbjct: 548 SISNFINEIVSYAKIKIQDSNLELVVDIEQFEGYLEGDAVRLRQVVYNLINNAIKYTDNG 607

Query: 387 G-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             +V +   + + +    Y  + D G GI+  +I  +   F +   +      G G+GL 
Sbjct: 608 FVKVVIRKLFENDKIMRIYFEVTDTGIGISPNDIDNIFKPFKRLDGSYTKKRYGSGIGLY 667

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           I+++I+        + S++ +G +    L   R + 
Sbjct: 668 ISKAILNMMNSNINVESEVGKGSKFYFKLDLKRSIP 703


>gi|300865341|ref|ZP_07110152.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300336644|emb|CBN55302.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 945

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/405 (25%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W              WTLL            +TI         L   +   F L   V  
Sbjct: 323 WVWIAFWSFSGAAGSWTLLASSYLKKNNFSTVTILYILVAGAGLMGISFIAF-LWGWVIP 381

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            F P++    +  + + H     L                   ++    L   +   +L 
Sbjct: 382 VFSPLLALTVSAILTTNHHNYWQLKTANQKLQ-----TANSDLETANNQLEEYSRNLELK 436

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                     +  +  A+  N AKS FLA+MSHELRTPLN ILG+++++E          
Sbjct: 437 VTERT--QELEAAKVAADFANHAKSEFLANMSHELRTPLNGILGYAQILERSQALASKE- 493

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E I  IH+ G HLL LIN+ILDLS+IEA + +L  + +   + +     + +++A +
Sbjct: 494 --LEGIRIIHQCGDHLLTLINDILDLSKIEARKLDLYPTELRFHNFLISVAEICRIKAVQ 551

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHV----TVGWTS 397
           K+I+        L   ++ADEK +RQV++NL+ NA+KFT  GG   +V +          
Sbjct: 552 KSIDFSPPKVSELPLKIYADEKRLRQVLINLIGNAIKFTDSGGVSFKVEILSKSECSLED 611

Query: 398 GR--------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                               SI+D G G+   ++  +   F Q          G GLGL 
Sbjct: 612 NNLWTTETENNQFSAAKIRFSIEDTGIGMTSEQLNKIFLPFEQVGDK-SRMATGTGLGLA 670

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPEDNH 486
           I+Q I+   G Q  + S+  EG        LP   V   +PE   
Sbjct: 671 ISQRIVNLMGSQLEVVSQFGEGSIFWFDVELP---VNFTLPEATS 712


>gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 377

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
               +  L+   V++AL    I+S   ++D +   +++T +         +  S   I  
Sbjct: 43  AWTTSALLTAAAVIMALGLNWILSRIGLIDFTGQIVISTVIVTILVGFPIIIYSQFIIRE 102

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +  +  L    E            AE  N AKS FLA+MSHELRTPLNAI+GFS++I  
Sbjct: 103 LKTSRRTLRKMTER----LAWAFDNAERANEAKSNFLANMSHELRTPLNAIIGFSDIIRF 158

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES-AISLIDIVREC 335
           +  G + N  Y++Y  DI+ SG HLL++IN+ILDL++I+AG   + +    S+   +   
Sbjct: 159 QRFGSVGNSRYQDYAKDINESGIHLLSIINDILDLAKIDAGHGTMEQEAEFSVRSAIDCA 218

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             M++  A+ + I +      + + +   E+ +RQV++N+LSNA+KFT  GG V V    
Sbjct: 219 ERMVRSLAERQEISLSTAAAETSAYLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEH 278

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  +SI D G G++  E+   LT FGQ   A+     G GLGLP+A+++M  HGG+
Sbjct: 279 RPNGNLVVSISDTGIGMSPDEVKVALTPFGQSGSALSRKHPGTGLGLPLAKAMMDMHGGR 338

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPED 484
            ++RS + +G  V  + P+ RVL    + 
Sbjct: 339 LMVRSMVGKGTTVTLVFPSGRVLRTSEKA 367


>gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 909

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 10/247 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E + +AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   +    +
Sbjct: 531 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 586

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  + + LL LIN+ILDLS+IE+G  +      +L  +  E   M+Q +    ++
Sbjct: 587 EYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITNPDV 646

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E           ++ D   ++QV +N L+NAVK T   G + +           I ++D+
Sbjct: 647 EFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCT-KSGYIKMGYSIEREG-IRIYVEDS 704

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E     V   F +         QG GLGL I+++I+   GG+    S    G   
Sbjct: 705 GVGIPEELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTF 760

Query: 469 IAILPNT 475
            A +P  
Sbjct: 761 WAWIPCE 767


>gi|71906644|ref|YP_284231.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846265|gb|AAZ45761.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 497

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 107/481 (22%), Positives = 185/481 (38%), Gaps = 29/481 (6%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----QNP 70
           ++ T D +    P   D +  +         R+   + +  L+   + + F         
Sbjct: 1   MTSTLDDILSVAPGITDRNEAVREQRHRYRVRMLSAISISYLIDCLLLSLFFAAGTVPVQ 60

Query: 71  IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
           +  ++ L  L        L    ++  ++  ++  W++   +      + W         
Sbjct: 61  VPALYGLAGLGHVLILSFLHWVGVSDRVRSSQMTEWQMIYAIAVQLFFVVWAPSIATYFL 120

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
           +              L +  I      +   AV + F    V ++  +     V+  S A
Sbjct: 121 SIIFIIFGFGALRISLRSAVIMWAMAIVATGAVLVIFRGERVGVAHPSAFESVVILSSFA 180

Query: 191 GMLATALSFFTYITY---HLFKSNVKILSCQAEKDDLIAELE-----------VAKSLSD 236
            +L   +    Y +     +FK NV +    AE+  + AELE                  
Sbjct: 181 LVLLRCILLGYYASQLRIRMFKKNVNLAEEIAERKCMEAELERHHLHLEELVAQRTRALS 240

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             ++ AE  N AK+ FLA+MSHEL TPL+ I+G +E+++        + T +  +  +  
Sbjct: 241 IAKEAAETANRAKNTFLATMSHELLTPLSGIMGITELMKRNA----ADATTQNQLLKMGD 296

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +   LL++IN IL  S++EAGR  L  +A SL  I++     L   A EK I +      
Sbjct: 297 AQNRLLHVINGILQHSKLEAGRLTLECNAFSLSSILKWVSSHLHPLADEKEIALAVADLS 356

Query: 357 --SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQ--YISIKDNGP 410
                  + D   + Q++    +NA+KFT  GG V V        G       ++ DNG 
Sbjct: 357 GWDGVEFFGDSARIGQIVSEFAANAIKFTERGGSVKVACEVVEVPGDAVLCRFAVSDNGI 416

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+  ++  V  SF Q   +   A  G+GLGL I + +    GG+    SK   G     
Sbjct: 417 GISPEKLDRVFNSFEQVDGSFSRAYGGLGLGLAICKQLAELMGGKVGAVSKPGVGSTFWF 476

Query: 471 I 471
            
Sbjct: 477 T 477


>gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 419

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL   + L D  R+ A   +  KS F+A+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGLMA----TATSE 222

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+I+AG      S     D++RE   +  +R  
Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLN 282

Query: 345 EKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E  +  +  +       + ++++ + QV+ NLL NA+KFT   G +            Y 
Sbjct: 283 ENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGTDEVYF 341

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG+F + S++ 
Sbjct: 342 YVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNLGGRFGVESEVG 397

Query: 464 EGVEVIAILPN 474
           +G   + ILP 
Sbjct: 398 KGSTFLFILPL 408


>gi|295705390|ref|YP_003598465.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803049|gb|ADF40115.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 460

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 16/311 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +  Q         + L  M+  ++ F    T +L K  VK+     +       +E+   
Sbjct: 155 IQLQFGEMRIFFSVILLLMIVLSILFVVISTRYLVKPIVKLTEATKQVAKGKYNVELYVK 214

Query: 234 LSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             DE            K  E+    +  F++++SHE+++PL +I GFS+ +       L+
Sbjct: 215 RRDEIGALASHFSEMAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRS---ANLS 271

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E   EY+  I    + + +L  ++L L+ ++     + +S   +   +++ +       
Sbjct: 272 DEQRNEYLSIIEEESRRMSSLSKQLLTLASLDKESEHIEKSTFDVAAQIKQVL--FMTEW 329

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +  E+  ++D   + +  D+K + QV  NL++N+VKFT  GG + + +G       ++
Sbjct: 330 SWREKELAIEMDLPSTMISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRIGM-EDTHCHV 388

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             +D G GI++  +P +   F +   A    E   GLGL I + I+  HGG   + S+  
Sbjct: 389 EFQDTGIGISKESLPHIFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKG 448

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 449 KGSTFHVYLPK 459


>gi|225569382|ref|ZP_03778407.1| hypothetical protein CLOHYLEM_05466 [Clostridium hylemonae DSM
           15053]
 gi|225161590|gb|EEG74209.1| hypothetical protein CLOHYLEM_05466 [Clostridium hylemonae DSM
           15053]
          Length = 436

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 11/320 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           +        +   V   +     M++ VL I            +    + + +    +  
Sbjct: 124 YYALRLPDGTVLRVSKTIDNAFYMAVQVLPIMGGLAAVMLFVAWMLSKWQVSRLIRPVNE 183

Query: 217 CQAEKDDLIAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
              E        E  + L +    + +++    N+ K  F A++SHEL+TPL +I G++E
Sbjct: 184 LNLEHPLENEVYEELRPLLESIDRQNKEKDAVANMRK-EFSANVSHELKTPLTSISGYAE 242

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   + P   E    +   I+     L+ L+ +I+ LSR++ G+ E+ +  + L ++ 
Sbjct: 243 IMKNGLVKP---EDIVVFSERIYNEASRLITLVEDIIKLSRLDEGKVEMEKEEVDLYELT 299

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           RE    L  +A  +N+ I    +P         + + ++I N+  NAVK+   GG V V 
Sbjct: 300 REICSRLSPQASSRNVHIEVTGEP--VVYRGIRQILDEMIYNICENAVKYNRRGGSVSVW 357

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           VG T    + I + D G GI + E   +   F +   +      G GLGL I +     H
Sbjct: 358 VGSTLKGRKVI-VTDTGIGIPKEEQERIFERFYRVDKSHSKESGGTGLGLSIVKHGAMIH 416

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           G    + S+  +G ++    
Sbjct: 417 GADIRVESEPGKGTKMELTF 436


>gi|144901059|emb|CAM77923.1| Sensor histidine kinase/response regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 896

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 13/369 (3%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W ++  ++          +      + + ++       +  A  ++     +  +T+A+ 
Sbjct: 283 WGMVVKIDVSETLASVERLRALGWWIGSAAVLFGLLAAIFIARAIAAPLKDLQQATEALS 342

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                                 I       N      Q+    L   +E         + 
Sbjct: 343 QGTFQPPLAVDGSVE-------IADLAHSFNHMAREIQSYHHGLERMVEDRTKELRAAKD 395

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE    AK+ FLA MSHELRTP+N I+G +E++        N+   + + G I +SG+ 
Sbjct: 396 TAEAATRAKTDFLAVMSHELRTPMNGIIGMAELLRRRL---ENDGEAQRWAGTIKQSGET 452

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N+ILD+SRIE G       A + + +  + + +++L A EK + +     P L  
Sbjct: 453 LTVLLNDILDISRIEGGHLTFERRAFAPLRLAEDLVALMRLPAAEKGLSLRLDAAPDLPD 512

Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +  AD   +RQV+LNLL NA+KFT   G + +++  ++      S+ D G G+A  +   
Sbjct: 513 LALADPARLRQVLLNLLGNAIKFT-DHGDIVLSLAMSTPHSLRFSVADTGIGVAAADRDR 571

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q   +      G GLGL I + ++   GG     ++   G  ++  LP T   +
Sbjct: 572 LFEPFFQADSSASRRHGGAGLGLAICKRLLDGMGGAISYEARPGGGSLLVVDLPFTAATD 631

Query: 480 FIPEDNHES 488
             PED+ ES
Sbjct: 632 T-PEDDDES 639


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 11/323 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P  +           V+++  + +         ++   L +           +D L
Sbjct: 70  ARLGPGSLLWDLTPTPPRRVVEVKWSPVNLKPDPSLVFVFRDLTEITRAQDQITKARDTL 129

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             ++          R  A     A  +FL+++SHE+RTPLNA++G S+++   ++    +
Sbjct: 130 EQDVAARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDTSL----D 185

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I+ S + LL LIN+ILDLS+IEA + ++S    SL  +V +C  M+    +
Sbjct: 186 GQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVR 245

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +E+          ++  D   +RQ++LNLL+NA+KFT   G V V +GW       I
Sbjct: 246 AKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFT-SHGSVDVKIGWRPLTSSAI 304

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                + D G GI+E  +  +   F Q    A  S   G GLGL I   +    GG    
Sbjct: 305 ELDLVVADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEA 364

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S+L +G      LP  R     
Sbjct: 365 VSQLGQGSRFHVRLPLKRSEPEA 387


>gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 10/268 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + + K L    E      + + A     + +++AE  + AKS FLA+MSHE+RTP++ IL
Sbjct: 594 QLDAKQLMLLLEGLWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGIL 653

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G ++V+    +     +   +YI  +  S   LL +IN+ILDLS+IEA + +L     +L
Sbjct: 654 GMADVLLTTRL----EDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNL 709

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              +R  +    L+  +K + +   +DP L   +  D   + Q++ NLLSNA+KFT+ GG
Sbjct: 710 DAALRAVVDPFVLQTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGG 769

Query: 388 RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V + V               ++D G GI   +   +  SF Q   +      G GLGL 
Sbjct: 770 -VTLRVVPVQVSGVDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLA 828

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+++ +   GG+  + S   +G      
Sbjct: 829 ISKNFVEMMGGRIWVESIEGQGSLFAFT 856


>gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
          Length = 541

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 117/460 (25%), Positives = 186/460 (40%), Gaps = 39/460 (8%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
            + +  + +     W   +    +W  ++     A   L    +         + W + L
Sbjct: 52  PVAVLAVALPFEAWWIGASRRAALWGAVSAIAAIALQPLAAAFLPFAGAQIAAWHWLVPL 111

Query: 111 LVGQIAIGLCWTL---LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
                 I     +       +          I  +  L +A     L        +    
Sbjct: 112 AWALTLIPRLSAVGDSAGATDTLDAGGRLEDIIDAVILRVARHGEVLDASDKARTLLK-- 169

Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
            P  +   T     +H+ D      +LA M   A S    +   L ++       +    
Sbjct: 170 LPPELLSGTGFFDRVHLSDRVSYLSALADMRDGAASRRLELRVRLPQNGNGQNDTRQSDS 229

Query: 223 DLIAEL------------EVA-------KSLSDETRKRAE---------EENLAKSRFLA 254
            L+A+             E +       +   +  R R E            +AK RFLA
Sbjct: 230 RLMADNYRPFLLELLRGEEQSDVFTLVLRENDETARLREELAQANETAAAAEVAKGRFLA 289

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +SHELRTPLNAI+GFS+++  E  G   +   KEY+  +  SGQHLL ++  ILD+SRI
Sbjct: 290 VVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSRI 349

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E+G Y         ++ V  C  M++L+AQ KNI++  +I P    + AD + ++Q+++N
Sbjct: 350 ESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQMLIN 409

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KFT  GG V V      G   +  ++D G GIAE +   +   F Q        
Sbjct: 410 LVSNAIKFTPDGGDVVVGAKRI-GSRLHFWVRDTGIGIAEEDFANLGKPFTQIQNDYTRR 468

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +G GLGL + + ++A H G   I S   EG  V   LP 
Sbjct: 469 FEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 508


>gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 615

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G   L+    +++
Sbjct: 383 AVQLL-DFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E  + +   A+ K I I    +     +  D   + ++ILNLLSNA+KFT  GG +
Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +   S    Y+ IKD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNIK-DSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I S+L +G E I  LP 
Sbjct: 561 EMHNGTVTINSELGKGTEFIIKLPA 585


>gi|228951780|ref|ZP_04113879.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807902|gb|EEM54422.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 468

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
          Length = 893

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ILG +++     +    N   +EY+  +  S Q LL++I++I
Sbjct: 269 KSAFLANMSHEIRTPMNGILGMTQLCLDTDL----NSEQREYLTLVMSSAQSLLHIIDDI 324

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+  L E  ++L   ++  +  L   A EK IE+  ++D  +   +  D   
Sbjct: 325 LDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPQTLRVDVVR 384

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQV+ NLLSNA+KFT   G + + V            ++D+G GI   +   +  +F Q
Sbjct: 385 LRQVLTNLLSNALKFTHQ-GEILLAVAPGPQPGEWRFRVRDSGIGIPPEKQQVIFEAFSQ 443

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
              +      G GLGL I+  ++A  GG   + S+  +G E    LP        PE
Sbjct: 444 ADTSTTRRYGGTGLGLTISARLVAMMGGLLTVASEANQGSEFSFTLPLQSAAQATPE 500


>gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 523

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 100 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 159

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 160 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 214

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 215 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 274

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 275 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 331

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 332 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 381


>gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1353

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 10/246 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +     +  AE  N AKS FLA+MSHE+RTP+NA++G S ++    +    N+  ++ + 
Sbjct: 626 AELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLT 681

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  +G+ LL +IN+ILD+++IEAG   L  +  S   ++ E   +   +AQEK +    
Sbjct: 682 KLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSV 741

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407
            +  SL   +  D   + Q+++NL+ NA+KFT++GG V VTV              S++D
Sbjct: 742 NVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG-VDVTVSREDDHADTCCLRFSVQD 800

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    +  + + F Q   +      G GLGL + + +    GG+  + S+L  G E
Sbjct: 801 TGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSE 860

Query: 468 VIAILP 473
               LP
Sbjct: 861 FWVELP 866


>gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 608

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 246 NLAK--SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           NL K    F+AS+SHELRTPL  I G++E +    M     E    ++  I  + + L  
Sbjct: 359 NLEKIRRDFVASVSHELRTPLTVITGYTETLLDGAM--HEPEHATAFLQTILLATEQLTA 416

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSRIE+G+ E + SA+ L  +V++ + +L+    +K I +   I   L +V+A
Sbjct: 417 LVNDVLDLSRIESGQIEYTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYA 476

Query: 364 DEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           D + +  V+ NLL NA+K+     G++ +T  + S     + I+DNG GIA+ ++  +  
Sbjct: 477 DPRYLDIVVRNLLDNAIKYVDDQNGKIRITA-FKSDDHLRLEIEDNGIGIAKSDLGRIFE 535

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            F +   A      G GLGL I + I+  H G   +RS++  G     +L    V   
Sbjct: 536 RFYRVDKARSRERGGTGLGLAIVKHIVMAHKGNIDVRSRVNLGSVFTLMLRTEWVDEE 593


>gi|53713096|ref|YP_099088.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215961|dbj|BAD48554.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 639

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +LE ++    E + RAEE N  KS FLA+MS+E+RTPLNAI+GFS+V+     G  
Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSYEIRTPLNAIVGFSDVLAS---GGS 451

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILDLSR+EA +  L+     ++ + R+ +  +++ 
Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
            +E       +       +  D + ++QV++NLL+NA KFT   G + +           
Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++ D G GI + +   V   F +         QG GLGL I +  +   GG   I   
Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626

Query: 462 LREGVEVIAILPN 474
             +G   +   P 
Sbjct: 627 YEDGARFVVSHPL 639


>gi|323694521|ref|ZP_08108689.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
 gi|323501435|gb|EGB17329.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
          Length = 1312

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            K++  + +      + +  +    E  + A+  N AKS FLA+MSH++RTP+NAI+G +E
Sbjct: 901  KVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTE 960

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +   +     + E   E    I  S  HL+++IN+ILD+SRIE+G+ E+ +   S  +  
Sbjct: 961  LALSDL---SDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEH 1017

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV--- 389
            ++ +  +   A+ K +     +D        D   + +V+ NLLSNA+KFT  GGRV   
Sbjct: 1018 QKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYS 1077

Query: 390  --HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           I++ D G G+ E     +   F +   +     +G GLG+ I +S
Sbjct: 1078 FAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKS 1137

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHESTQYK 492
             +   GG   + S+   G + I  +P        +P+      + +
Sbjct: 1138 TVELSGGSIEVESEPGRGSKFIVKIPIRLADEQEVPKKEPPKPEIQ 1183


>gi|323485533|ref|ZP_08090879.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
 gi|323401181|gb|EGA93533.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
          Length = 1312

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            K++  + +      + +  +    E  + A+  N AKS FLA+MSH++RTP+NAI+G +E
Sbjct: 901  KVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTE 960

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +   +     + E   E    I  S  HL+++IN+ILD+SRIE+G+ E+ +   S  +  
Sbjct: 961  LALSDL---SDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEH 1017

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV--- 389
            ++ +  +   A+ K +     +D        D   + +V+ NLLSNA+KFT  GGRV   
Sbjct: 1018 QKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYS 1077

Query: 390  --HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           I++ D G G+ E     +   F +   +     +G GLG+ I +S
Sbjct: 1078 FAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKS 1137

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHESTQYK 492
             +   GG   + S+   G + I  +P        +P+      + +
Sbjct: 1138 TVELSGGSIEVESEPGRGSKFIVKIPIRLADEQEVPKKEPPKPEIQ 1183


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-----EVAKSLSDETRKRAE 243
           L   +  AL+   +I   L K   +       K   ++E             +E  ++ +
Sbjct: 176 LGLSVVLALAMGAWIARPLQKMQKEAAQLAEGKAVGVSEEGPQEVRELAHSLNEMMRKVQ 235

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
               A+  F+A++SH+L+TPL AI GF++ I        + ET +     I+     +  
Sbjct: 236 AGQRAQRDFIANVSHDLKTPLTAIQGFAQAILDG--TAQSPETLRNAATVIYNEASRMYR 293

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L L+R +AG  +L    +   D++RE +      AQ+  + +  + D SL  ++A
Sbjct: 294 LVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLE-DASLPVLFA 352

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + Q + NL+ NA+K+T  GG + +  G        + ++D G GI+  E   +   
Sbjct: 353 DGERLMQALANLMDNALKYTPAGGTIVLR-GKVEEGHLLLEVQDTGKGISPEEQTRIFER 411

Query: 424 FGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +G+ +     EQ  GLGLPI + I+  HGG+  + S++ +G     +LP  
Sbjct: 412 FYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYSEVGKGSCFTLVLPLQ 464


>gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 781

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +      R +AE+ +  K+ FLA+MSHE+RTPLNAI+GFS ++        N 
Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM----TIADNA 453

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I+++ + LL LIN+ILDL++IEAG  E     + L ++ R    M + R  
Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      +   +  D+  + QV+ NL++NA+KFT   G +               
Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GI+E +I  +   F +      +  QG GLGL I + I+   GG+    SKL E
Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626

Query: 465 GVEVIAILP 473
           G      +P
Sbjct: 627 GSTFRFTIP 635


>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/253 (35%), Positives = 137/253 (54%), Gaps = 10/253 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E    K  FLA ++HE+RTPLNAI+GFS++++ + +    +   KE +  I  S + L
Sbjct: 326 ATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRL----DGQEKESVDAIQSSSRIL 381

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSS 360
           L L+N++LD S++E+G+  L     + +D V E + ++++ A EKNIEI  KI   +   
Sbjct: 382 LTLVNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVC 441

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGE 416
           +  DE  ++QV++NLLSNA+KFT   G+V V        GQ     I +KD+G GIA   
Sbjct: 442 LLGDEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEH 501

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F Q   A  + + G GLGL I + I+  HGG+  + S + +G E    +P T 
Sbjct: 502 LKEIFEDFKQIGAA-SAGKPGTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIPMTV 560

Query: 477 VLNFIPEDNHEST 489
                      ST
Sbjct: 561 AEKASAPPQVRST 573


>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 301]
 gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 301]
          Length = 949

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 694

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 139/326 (42%), Gaps = 14/326 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           +  P+  A      +     D   A +L  A+     +   L  S              +
Sbjct: 237 ARLPLHAADGKVVGVIGWTPDRPGAALLVDAVPMLAALVTLLLASVAFGGMRVYRLLRDL 296

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A  E   ++ D T   AE  N AKS+FLA+MSHELRTPLN I+  +E++         + 
Sbjct: 297 AHNE---AVLDRTLAEAETANAAKSQFLANMSHELRTPLNGIIAMTELLRDH----QTDS 349

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E    I  SG  L  ++N+ILD+++IEAG  +   +   L D+++    +    A  
Sbjct: 350 RGREMAATIISSGHTLEYVVNDILDVAKIEAGLLQFEAAPFDLDDLLKAATQLHGAAAAA 409

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K I +   I    S V+  D   + QVI NL+SNAVKFT  GG V VT      R   +S
Sbjct: 410 KGITLRLTIHDDASGVYRGDRTRVSQVISNLISNAVKFTETGG-VQVTARRHGDRELCLS 468

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G        +   F Q  +++     G GLGL I  S+    GG+  +RS   +
Sbjct: 469 VSDTGVGFDRATAARLFQRFEQADVSVSRRYGGTGLGLAICASLTEIMGGRVTVRSVPGK 528

Query: 465 GVEV--IAILPN---TRVLNFIPEDN 485
           G        LP      V+   P   
Sbjct: 529 GSTFFAHLALPRIGNAEVVASEPAAA 554


>gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 621

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 131/250 (52%), Gaps = 11/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 382 ITQLKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +Y+  I  + + LL LI++ILDLS+IEAG +++    ++   +  E    +Q++A 
Sbjct: 438 EEKHQYVTIIEENNKLLLQLISDILDLSKIEAGTFDVIPEQVNAQQLCNELFQAMQMKAT 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              ++I    +       +++  + QV+LN ++NA+KFT+ G  +       +G     S
Sbjct: 498 -PQVKILLAPELPELIFTSNKNRLYQVLLNFVTNALKFTSEGSIII--DYRINGNEVRFS 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA  +   + T F +      S   G GLGLPI QSI+   GG+  + S+  +
Sbjct: 555 VKDTGIGIAPEKQEAIFTRFVKL----NSFIPGTGLGLPICQSIITQLGGKIGVESEPGK 610

Query: 465 GVEVIAILPN 474
           G       P 
Sbjct: 611 GSCFWFTHPL 620


>gi|226947584|ref|YP_002802675.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841756|gb|ACO84422.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 464

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 147/327 (44%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   T +   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +       I +KD G GI + ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 551

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E + +AE  + AKS F+A++SH+LRTP+N ILG +++  +        
Sbjct: 155 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 214

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I D+  S   LL L+ +ILD +R+E G+ EL  S  +L  +V   +     + Q
Sbjct: 215 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQ 270

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401
           +K I+I    D SL  S+ ++   +R++ LNL+ NAVKFT   G++ VTV     +    
Sbjct: 271 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 329

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI + ++ T+   F + +    S  +G+GLGL I + ++ N GG+  + S 
Sbjct: 330 KILVKDTGLGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 389

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             EG      +P        P +  E+
Sbjct: 390 ENEGSTFTLTIPCEIASLQSPREKEET 416


>gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
 gi|156864697|gb|EDO58128.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
          Length = 583

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 8/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  ++   +    A      ++ FLA+MSHE+RTP+N ILG  ++     M     
Sbjct: 180 ITDQKDTENKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMADDLQ 236

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y++ +         LL LIN+ILD+S++EAG+Y++ E    +   + E +      A 
Sbjct: 237 ADYRDNLVTAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIKQAIEETVAAQVPLAN 296

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHV-TVGWTSGRGQ 401
            K +++      ++   V  D + ++QV+  LLSNA+KFT+ G  RV + ++        
Sbjct: 297 NKGLQLDCSFGNNIPKLVKGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDMEGENKV 356

Query: 402 YIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            I   + D G GI+E  +  +   F Q   +      G GLGL I + I+   GG   ++
Sbjct: 357 KIRMAVADTGIGISEANMSKLFIRFSQVDSSDTRRYGGSGLGLVITKQIVELMGGNIQVQ 416

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           SK   G   I  +P   V   
Sbjct: 417 SKEDIGSTFIVEVPMKVVKAS 437


>gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
 gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
          Length = 428

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +       +   +    L+ +L   L    + T  + K ++ +       D++    E+
Sbjct: 126 FIIAGIITFLLTAITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSLTTTRNDEI---GEL 182

Query: 231 AKSLSDETRK----RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           A+S+          + E      S FLAS+SHELRTPL  + G++++   ++  P   E 
Sbjct: 183 AQSIQTLANDLHYMKTER-----SEFLASVSHELRTPLTYVRGYADIALKDSTPP---EQ 234

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y+  I     ++ NL+ ++  L+++E   + +    + L   +      +    +E+
Sbjct: 235 RLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKER 294

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +I++     P+L  V  DE+   QVI+N+L+NA + +     ++++V     +   I+I+
Sbjct: 295 HIKVSFTCPPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISVT-EEYKHISITIE 352

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI   ++P +   F +   A   +  G GLGL I + I+  HGG   + S++  G 
Sbjct: 353 DDGEGIPPEDLPHIFDRFYRVDKARTRSTGGTGLGLSIVKEIVELHGGNITVISEVDHGS 412

Query: 467 EVIAILP 473
                LP
Sbjct: 413 CFTISLP 419


>gi|225388888|ref|ZP_03758612.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
 gi|225045061|gb|EEG55307.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
          Length = 525

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 136/244 (55%), Gaps = 9/244 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              ++  + A   N AK+ FL+SMSH++RTP+NAI+G + VI    +G  N E   + + 
Sbjct: 1   RALEDAYQAARVANDAKTNFLSSMSHDIRTPMNAIMGMA-VIAQANLG--NPEKLTDCLS 57

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  S +HLL LINE+LD+SRIE+G+ +LS   +SL D+V E I + +  + +K+ ++F 
Sbjct: 58  KISTSSRHLLGLINEVLDMSRIESGKIDLSSEMVSLPDLVEEVIGICRPLSNQKHHQLFI 117

Query: 353 KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIK 406
             D      V  D   ++QV++NLLSNAVK+T  GG + + +                + 
Sbjct: 118 SADHVRHEKVVTDMNRLQQVLMNLLSNAVKYTPDGGTISLRLRELPSIVPGRGQYEFIVS 177

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G+ E  +P +   F +   +  S  QG GLG+ I ++I++   G   ++S+L EG 
Sbjct: 178 DNGIGMPEDFVPHIFEPFTRAEDSRISKIQGTGLGMTITENIVSMMNGTIEVKSQLGEGS 237

Query: 467 EVIA 470
           + I 
Sbjct: 238 QFIF 241


>gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1037

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 178/520 (34%), Gaps = 58/520 (11%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           R +  +   +    +     L  +   +   D  +  L  +        +     L    
Sbjct: 108 RRQAMRALWLQEAENAVAMSLRGDLGPEQIADAAVTRLAEQLRAD----VGAVYRLEGGR 163

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY-----------VWRIWLL 111
                   +                 + +      +   E               R  +L
Sbjct: 164 LQLTGGMALPSGTPASLSLQEGLAGQVARDERIRHLHGDEAAVLELQTSLGRLPVRERIL 223

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
               + G    ++ L        +   +        A +I       L  A  +      
Sbjct: 224 APINSDGSVVGVIELGR--ARIGDQQGLDDELLERCAETIGMALRASLLRAQLVVLL--- 278

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
                                L             L + +  +L  Q+  ++  AELE +
Sbjct: 279 ------------EESQRQGEELQAQQEELRVANEELEEQSRSLLQSQSHLEEQQAELEQS 326

Query: 232 KSLSDETRKRAEE---------------------ENLAKSRFLASMSHELRTPLNAILGF 270
               +E     E                       +  KS FLA+MSHELRTPLN+ L  
Sbjct: 327 NVQLEERTHELEAQKQALLVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLIL 386

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++     G L  E  K Y   I  S   LL LIN+ILDLSRIEAG  EL++  + +  
Sbjct: 387 AKLLADNKDGTLTEEQVK-YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDS 445

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++      +  A++K + +  + D    + + AD + ++Q++ NLL+NA+KFT   G+V
Sbjct: 446 VLQRLRETFEPMARQKGLALEIEADALAPTQLVADNQRLQQILKNLLANALKFT-EHGKV 504

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V           + D G GIA  ++P +  +F Q   + +    G GLGL I++ + 
Sbjct: 505 SLHVRAGGNGRVRFDVCDTGIGIAREQLPVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 564

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHE 487
              GG   + S+   G   I  LP         +P    E
Sbjct: 565 ERMGGSIQVDSEPGRGSCFILELPLQGAPASQALPAMATE 604


>gi|119468828|ref|ZP_01611853.1| histidine kinase response regulator hybrid protein [Alteromonadales
           bacterium TW-7]
 gi|119447480|gb|EAW28747.1| histidine kinase response regulator hybrid protein [Alteromonadales
           bacterium TW-7]
          Length = 734

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 11/270 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           L K  +  L  + +  +L   LE         ++ +  A+  N  K RFLA+MSHELRTP
Sbjct: 150 LGKEVIAQLELRLKNRELTKTLELQNQHNQELEKLKAEADAANDLKGRFLANMSHELRTP 209

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ IL  +E      +   NN    E +  I  S   L N++N+ILD S+IEAG+ ++  
Sbjct: 210 LHGILNLAEF----GLSDSNNNEKDEALKSILNSATILSNIVNDILDFSKIEAGKLDIEH 265

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               L +++   I  L  +A  K I++   +D  ++  +  D   + Q++ NL SNA+KF
Sbjct: 266 IDFKLSEVINSVIEPLTKQALNKGIKLITSVDKKVAETLKGDPLRISQILNNLCSNAIKF 325

Query: 383 TAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G     V V     + +     + D G GI++     +   F Q   +      G G
Sbjct: 326 TQAGQVELIVTVESHSLNTQNIAFKVIDTGIGISQAAQVNLFKEFQQADSSTSRKYGGTG 385

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           LGL I   +     G+    SK  EG   I
Sbjct: 386 LGLSICTKLSKLMNGKISFTSKEGEGSVFI 415


>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
 gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
          Length = 1132

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 155/354 (43%), Gaps = 10/354 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           W L+  +           +       ++ A+ +   ++ +L  ++      + +  + + 
Sbjct: 332 WALIVELPEKEAFARITELEKIFGVAMVTAIILVIFTSHLLSNSITAPL--LRLTWAAEK 389

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                +  +      +  +         + +S  + +     ++D   ELE +  +  + 
Sbjct: 390 ASGGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKIIKQK 446

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               +  +  K  FLA+ SHELRTPL+ ++G +E +     GP+  ++ +  +  I  SG
Sbjct: 447 NNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPV-KDSQRRQLEMIINSG 505

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q L NL++++LD  ++  G  ++   AI L   VR  + +       K + I  +I  +L
Sbjct: 506 QRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPANL 565

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V ADE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   ++ 
Sbjct: 566 PLVDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPSEQLE 623

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +     Q +    +  QG GLGL I++ ++   GG+  + S+   G      L
Sbjct: 624 HIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 677


>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 950

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 452 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGID----S 507

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +IV   +        +K + 
Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLT 567

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+  +  V   D   ++QVI NLL+NA+KFT   G + +   + +       ++D 
Sbjct: 568 LYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-YVAQGYLAFRVRDT 625

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+P +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 626 GVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685

Query: 469 IAILP 473
           I  +P
Sbjct: 686 IVRIP 690


>gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1]
 gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 617

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        N E   +++    +    ++ +IN+
Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KNPEIAPKFLEVTQQETSRMIRMIND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDPSLSSV 361
           +L LSR++ G  ++    ++L D V   +    +  +           I +++      V
Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWV 493

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  + 
Sbjct: 494 EIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQ-NQNHVILSISDQGLGIPRKDLGKIF 552

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 553 DRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYEPMTEE 611


>gi|88860288|ref|ZP_01134926.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88817486|gb|EAR27303.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 902

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 154/370 (41%), Gaps = 23/370 (6%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           ++ L+       E      +    ++ ++  L+  +LP  V          L  +  +  
Sbjct: 134 VMGLLVIEYTRSEKNYTLFALMATLSFAMFILTLVVLPIFVNKRIKENTARLENEINLIT 193

Query: 183 HVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDD--------LIAELEVAK 232
              D  L       +       +   L  S  +  S     +D        L  ++    
Sbjct: 194 DKKDYHLTVSTDLGIGLNKIAILINQLLNSVKESESLHLVAEDKLHGLQLSLENQIMSRT 253

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              ++    A++ N  K+ FLA+MSHE+RTP+N I+G  +++    +             
Sbjct: 254 QELEKAITSAQQANETKTTFLATMSHEIRTPMNGIIGTIDLLRHTELSGP----QVRLSS 309

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  S   LL ++++ILD S+IEAG+ ++    +S+  IV E   ++   A +  +E+  
Sbjct: 310 IIRDSAFSLLGILDDILDFSKIEAGKLKVDLIPLSVQQIVEEVARVMSSIAHKNALELNL 369

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTSG----RGQYI 403
            IDP++   +  D   +RQVI NL SNA+KFT       G+V + V  +           
Sbjct: 370 FIDPNIPEGLLGDPIRVRQVIYNLCSNAIKFTNSTNDKQGKVSIDVTLSQKTHDFNTVDF 429

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I DNG G+ + ++  +   F Q   +I     G GLGL I +S+     GQ  + S+  
Sbjct: 430 KISDNGRGMTKQQLGRIFQPFSQAEDSITREFGGTGLGLSICKSLTELMYGQIKVTSEPG 489

Query: 464 EGVEVIAILP 473
            G E +  +P
Sbjct: 490 IGSEFLISIP 499


>gi|218885172|ref|YP_002434493.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756126|gb|ACL07025.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 598

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 30/346 (8%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD--- 223
              +VV+ +     ++  +       +   +     + + + +  ++    +AE      
Sbjct: 98  MPTIVVSGTGVMQDAIEAVRRGAWDFILKPIMDLEVLGHRV-RLAIEQGRLRAENRRYHQ 156

Query: 224 -LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L AE+ V     ++ R  AE  N AK++FLA++SHELRTPLN I+G +E++    +   
Sbjct: 157 NLAAEVAVRTHELEQARVEAESANRAKTQFLANISHELRTPLNGIIGLTELL----LAAG 212

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +E +G + ++G  LL+++N +LD+S IEAGR  L+E+  +L + V + + +L ++
Sbjct: 213 PAGEQEECLGMVRQAGLDLLSIVNNLLDMSSIEAGRIALNEAPFNLRETVGDLVRVLDVQ 272

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A+ KN+ +   + P +   +  D   +RQV+ NL+ N +K+T +GG V ++V        
Sbjct: 273 ARWKNLTLACSVSPDVPDRLVGDAARLRQVLTNLVINGIKYTEVGG-VSLSVELDGALPP 331

Query: 399 ----------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                            G  ++++D G GIA  +   +   F      +     G GLGL
Sbjct: 332 VPGAGQGAHAAHAGGPVGLRVTVEDTGVGIASEKWERIFEPFTLAENFLTKKYGGAGLGL 391

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            I++ I    GG   +RS+   G   +  +      +  P     S
Sbjct: 392 AISREIARMMGGDIAVRSQEGAGSTFVLTMRFALGESVAPRPRDAS 437


>gi|188577310|ref|YP_001914239.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
 gi|188521762|gb|ACD59707.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1191

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V +   +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402
             +     +D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 905  QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            L +G   +  LP   V + +P     + + +
Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSAVRAR 1053


>gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28]
          Length = 581

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 347 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 404

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + +++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 405 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 463

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 464 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 522

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              A      G GLGL I + ++ N GG+  + S+   G      LP   ++N +
Sbjct: 523 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKKDLINIL 577


>gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 702

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L + K++  +    AE    A+S FLA+MSHE+RTP++ + G  E +   ++    N
Sbjct: 286 ITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGMLEALISSSL----N 341

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T  E+     +S   LLN++N+ILD S+I++G     ES  +L D + E + M    A 
Sbjct: 342 STQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTIEEQVPMFTRLAH 401

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK IE+          +  AD+  + Q+++NLL+NA+KFT   G+V V    T       
Sbjct: 402 EKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKE-GKVTVETKSTRYGKGRF 460

Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +K    D+G GI+E +   + + F Q   + +    G GLGL I   I+ ++GG+  + 
Sbjct: 461 RVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQIVKHYGGKIEVC 520

Query: 460 SKLREGVEVIAIL 472
           S L  G   I  L
Sbjct: 521 SDLGVGARFIVTL 533


>gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 873

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 9/317 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            VAL +Q++ S   + + +     +   ++  +           L      +  I +   
Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +        ++++   AKS FLA+MSHE+RTP+NAI+G SE++        N    +E 
Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +H+S  +L+ +IN+ILD S++EAG+  L E    L  +V  C  +   +A +KN+++
Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              I  ++ + V  D+  + Q++LNL+ NAVKFT   G V + V  +       S+ D G
Sbjct: 473 LVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  +  ++  F Q   +     +G GLGL I++ +++ + G+  + S    G    
Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGNGSCFS 590

Query: 470 AI--LPNTRVLNFIPED 484
               LP     +  P +
Sbjct: 591 FSLQLPKRSQPHSEPVE 607


>gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 662

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 11/267 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + KS +            +A  E+ K   D  R +AE EN +K RFLA +SHELRTPL +
Sbjct: 107 IIKSELSSSRFARAIRYALARREIEKERVD--RLKAEAENRSKDRFLAHLSHELRTPLTS 164

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG++E++    +G          +  +  + +HLL+L+N +LDLS+I A + EL+ S +
Sbjct: 165 ILGYTELLMDSKIGQSAQSE----LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEV 220

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           +L  ++ +   ++ + A +K + +    D  L   +  D    RQV++NL+SNA+KFT  
Sbjct: 221 NLDALIADVYALMNIPATDKGLTLSVISDTPLPLKITTDATRFRQVLINLISNAIKFTEQ 280

Query: 386 GGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G V + +           + S+ D G GI   ++ +V   F Q +  +   + G GLGL
Sbjct: 281 -GSVTLRLWCEDKPGCEFLHFSVTDTGIGIPANQLNSVFKPFEQVADVVSRRQGGSGLGL 339

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI 469
            I   ++A  GG+  + S   EG    
Sbjct: 340 AICNELVAKMGGEVSLHSTFGEGSCFT 366


>gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 571

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A +SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVADISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF     +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTHSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   +       + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G+  + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|116619668|ref|YP_821824.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222830|gb|ABJ81539.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 729

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 10/332 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P+   L T+  +   +LD   A     AL         L  +  ++   Q E   L  
Sbjct: 147 MLPLRAPLVTRLTLVK-LLDRLAAQAPPAALQELQQQNRELLATLEELAVRQEELVRLNL 205

Query: 227 ELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ELE          +  D+        +  KSRFL++MSHE RTPLN+IL  + ++     
Sbjct: 206 ELEDTNRGVVALYAELDDKADHLRRADEMKSRFLSNMSHEFRTPLNSILALTRLLLDRAE 265

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L  E  ++    I +S + L  L+N++LDL++++AG+  +  +   + ++      ML
Sbjct: 266 GDLTGEQERQVF-FIRKSAESLYELVNDLLDLAKVQAGKTTVHLAPFDVKNLFGALRGML 324

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +       + +  +    +S V +DE  + Q++ N +SNA+KFT   G V V V      
Sbjct: 325 RPLLVNTAVNLVFEEPEGISEVVSDEGKISQILRNFISNALKFT-DHGEVRVFVRREDAD 383

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D G GI   +   V   F Q    I+   +G GLGLP+++ +    GG   + 
Sbjct: 384 RVIFSVSDTGIGIDPADADRVFEEFTQLESPIQRKVKGTGLGLPLSRKLAELLGGTVSVE 443

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           S    G      +P    ++        +++ 
Sbjct: 444 SSPGVGSTFSLTIPIGDAVSAAAPAGESASEI 475



 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 17/113 (15%)

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +   +  +  NA  +   GGRV  ++ G T  +   I + D G GI   ++ ++L   
Sbjct: 53  TRLATAVSEIARNAYNYGG-GGRVEFSIEGTTVPQLFVIRVADAGRGIP--DLQSILDGR 109

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNT 475
            Q          G+GLG+  A+ +M     +F I S    GV V     LP  
Sbjct: 110 YQSET-------GMGLGISRARRLMD----RFEIESPPGGGVTVTMTRMLPLR 151


>gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
 gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
          Length = 617

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   + +F++++SHELRTPL ++  + E +        +      ++  I      ++
Sbjct: 371 QKEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDKDIAPQ--FLTVIQNETNRMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK-------NIEIFQKID 355
            +IN++L LSR+++G  +L+   +++ ++    +    +  ++           I +   
Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYFT 488

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QVI N+++NA+K++  GG +   +  T      +SI D G GI   
Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRK 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 548 DLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605


>gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
 gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
          Length = 1426

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 12/271 (4%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            ++   +   +A+  D++A     K+  ++    AE+ N AKS FL+SMSH++RTP+NA++
Sbjct: 1004 RNQKTVCLVRADVTDMLASERRTKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVM 1063

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G + +         ++   ++ +  I  + +HLL+LIN+ILD+S+IE  +  L+ SAI++
Sbjct: 1064 GMTTLAAAHL---DDSARVRDCLDKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAV 1120

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             D++ +   M+  +A +  +    + +       + D   + Q+++NLLSNA+KFT  GG
Sbjct: 1121 SDLLSQLNAMIAPQAADNGLSYSARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGG 1180

Query: 388  RVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            RV + V   +             + D G G++E  +  V   F +         +G GLG
Sbjct: 1181 RVELRVEEIAPVKAPDAVRYRFIVSDTGVGMSEAFLIHVFEPFTRDRNVT--RVEGTGLG 1238

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I + ++    G+    S+ R G      L
Sbjct: 1239 LSITKGLVDLMEGEITAESQERAGTVFRVEL 1269


>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1193

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+NA++G + ++    +        ++YI  IH SGQ LL LIN+ILD 
Sbjct: 562 FLANMSHEIRTPMNAVIGLAHLLLKGDLSG----KQRDYISRIHGSGQMLLGLINDILDF 617

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAGR  L E+  +L D++     +L  RAQEK + +   ++P + + +  D   + Q
Sbjct: 618 SKIEAGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLRLAQ 677

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQ 426
           +++NLL NA+KFTA  G + V V    G        I ++D G G+++ +   +  +F Q
Sbjct: 678 ILINLLGNALKFTAS-GSITVFVRRLPGNTARAELEIDVQDTGVGMSQEQQQVLFQAFSQ 736

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +I     G GLGL I + +     G   + S+   G      
Sbjct: 737 ADSSITRKYGGTGLGLTICKRLAQLMRGDIWVTSQSGVGSTFTFT 781


>gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1082

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEYI--- 291
           AE E +  K+ F++++SHELRTPL ++LGF+++I+ +           ++      +   
Sbjct: 593 AEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKINRAVNQV 652

Query: 292 ----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
                 I   G  L NLIN++LD++++EAG+ E     +S+  +V   I         K 
Sbjct: 653 ASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATTSLFNNKP 712

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I++   +  +L  +  D   + QV +NL+SNAVKFT   G V + +         +S+KD
Sbjct: 713 IKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTET-GNVTLKLMAVKS-AIKVSVKD 770

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   V   F Q    + +  QG GLGLPI Q I+ +HGG   + S++  G  
Sbjct: 771 TGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVESQVGVGST 830

Query: 468 VIAILPN 474
               LP 
Sbjct: 831 FYFTLPL 837


>gi|229177807|ref|ZP_04305180.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
 gi|228605598|gb|EEK63046.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
          Length = 466

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 469

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 15/338 (4%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------ 199
           ++ + I  L    L   ++L      +    + I +  ++  SL  ++   +        
Sbjct: 134 IVGVIIPLLDQHRLMGILYLYVPLASIEDVLKRIQAFLMIGGSLFLLITVFVGRKIAMHF 193

Query: 200 ---FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                ++    ++ +    S Q   +      ++AK+ +      A+E +  K  FLA++
Sbjct: 194 TKPLQHMQQAAYRVSQGDFSAQVNVEAEDEIGQLAKAFNQMAHALAKE-DERKKEFLANV 252

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPL+ + G+SE +    +        K+Y+  IHR    +  L+ ++LDL+++E 
Sbjct: 253 SHELRTPLSYVKGYSEALLDGVIKE--EAQQKKYVRLIHREASRMQRLVRDLLDLAQLE- 309

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G Y L  +  S+  +V E I   +   QEKNI +   +D  L  V  D   + QV+ N+L
Sbjct: 310 GTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLDLDHDLI-VDGDPDRIEQVLQNVL 368

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+++T   G + +           + I D+G G+++ +I  +   F +   +      
Sbjct: 369 DNALRYTPSFGTISLRA-VNKQPMCELIIADSGCGMSKEDIERLGERFFRADRSRSREHG 427

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLG+ I + I+  HGG     S+  +G  V   LP 
Sbjct: 428 GTGLGIAIVKQIIKLHGGSIRFESEQGKGTTVYMELPL 465


>gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
 gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
          Length = 438

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHEL+TP+ +I GF E +++     L+++T   ++  I      L  LI++
Sbjct: 207 MRKEFVANVSHELKTPITSIKGFVETLKMT--DNLDDDTKNRFLTIIENEATRLTRLIDD 264

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS IE  + +     + L ++  E   ++   A++KNI++  +       +W     
Sbjct: 265 ILLLSTIEN-KTKKKVEKVDLFEVFEEVHEVVNYIAKKKNIKVKYEFKNKYIDLWEYSGY 323

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ++LN++SNA+K+T   G V++   +   +  +I +KDNG GI + +I  +   F + 
Sbjct: 324 IRQILLNIISNAIKYTGENGSVNIK-QYIKAKKVFIEVKDNGIGIPQEDIERIFERFYRV 382

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + ++    G   + S+L  G + I  LP
Sbjct: 383 DKARSRSVGGTGLGLAITKHMVKALNGNIKVESELGVGSKFIIELP 428


>gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 840

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +  +   +   K A+  + N  K  FLA +SHEL++PL A++G S +++ E +G LN+  
Sbjct: 320 QQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNLNS-R 378

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344
              Y   I+RSG+ L+ L+N++LDL+R+E G+ +LS + +++ +I +     +  + Q  
Sbjct: 379 QVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKYQSK 438

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            EK ++   +I+P L  + ADE  + Q++++LL NA+KFT  GG++ + V   S      
Sbjct: 439 TEKPVDFSLEIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSD-WLAF 497

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI E     +   F Q    +    +G GLGL + Q +   HGG     SK  
Sbjct: 498 NVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAG 557

Query: 464 EGVEVIAILPNTR-VLNFIPEDN 485
           +G +   +LP +       P D 
Sbjct: 558 QGSQFTLLLPPSPHKEQPSPHDQ 580


>gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
 gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
          Length = 949

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTVMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 592

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 228 LEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV----IELETMG 280
           +E  +   ++ R R  E    +  K+ F A++SHELRTP+N I    +V    ++     
Sbjct: 309 MEQLQKNIEKERIRLSEIKKYDRMKTDFFANISHELRTPINLIFSAIQVYKLKLKECICE 368

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              ++ YK YI  + ++   LL L+N ++D+++I++G + + E   +++ +V +  + + 
Sbjct: 369 NSCSDRYK-YIKIMEQNCYRLLRLVNNLIDITKIDSGYFNIDEVNYNIVSLVEDTTLSIA 427

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              + K + I    D     +  D + + +++LNLLSNA+KFT  GG + V V     + 
Sbjct: 428 DYIKSKGLSIVFDTDVEEKIIACDPEEIERILLNLLSNAIKFTPRGGNIMVNVE-DGNKS 486

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I +KD G GI + ++ ++   F Q   ++    +G G+GL + ++++  HGG   ++S
Sbjct: 487 ISIKVKDTGKGIPKEKLNSIFERFVQVDKSLARENEGSGIGLSLVKALVELHGGTISVKS 546

Query: 461 KLREGVEVIAILPNTRV 477
           K   G E I  +P   V
Sbjct: 547 KEGYGSEFIIHIPCKLV 563


>gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
 gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
          Length = 611

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++  I    + ++ L+N +L L
Sbjct: 384 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 441

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 442 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 500

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 501 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 559

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 560 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 603


>gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
 gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
          Length = 877

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 16/273 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E    +         A +   AKS+FLA+MSHE+RTP+N I+G SE++   ++   
Sbjct: 353 RDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVSEMLRESSL--- 409

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  K ++  I+ S + LL LIN+ILD S++E  + +LSE    L  +V E   M+ + 
Sbjct: 410 -PKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTMVEETASMVAIS 468

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG 400
           A  K + +   I P + + V +DE  +RQV  NLL NAVKFT  G  R+ V      G  
Sbjct: 469 ASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHGYIRISVRAEPKPGDT 528

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                ++I+D G GI E ++  +  +F Q + +     +G GLGL I +S+++    +  
Sbjct: 529 SSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSITKSLLSLFNSELE 588

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           + S+  +G      L        +P    E T 
Sbjct: 589 VVSEYNKGSRFSFTL-------TLPTVPTEGTD 614


>gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 920

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 18/345 (5%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA-----LSF 199
           +L  L ++AL  F L     L      + ++   I S   +   L             + 
Sbjct: 399 VLAVLELAALEEFSLIQQELLEQVLDDIGITIDRITSHMQVSKLLKESQVLTEELQTQAE 458

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              +     K+  + L  Q +       ELE  ++  +E   + E+ +  KS FL+++SH
Sbjct: 459 ELQLQQEELKTFNEKLDEQYKTSHQRTVELEKVRAALEEKAGQLEQTSRYKSEFLSNISH 518

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN++L  ++++       L      EY   I  SGQ LL LIN+ILDLS++E+G+
Sbjct: 519 ELRTPLNSLLILAQMLAENDKSNLT-PKQVEYAETILSSGQDLLVLINDILDLSKVESGK 577

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            ++   A+ L DI +         A +K I     ID  L   ++ADE+ + Q++ NLLS
Sbjct: 578 MDVCPRAVKLKDIQKFLERQYLPVANQKTIVFTILIDSDLPETIFADEQRLLQILKNLLS 637

Query: 378 NAVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           NA KFT   G V +++     +             ++ D G GI++ +   +   F Q  
Sbjct: 638 NAFKFTEQ-GCVLLSIRKVQKKLTDKQEFPTMLSFAVSDTGIGISQEKHIMIFEEFRQAD 696

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                   G GLGL I+  I    GG   + S+  +G      LP
Sbjct: 697 GTTSRKYGGSGLGLSISNKIAMLLGGFIELESEEGKGSTFTLYLP 741


>gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
          Length = 1194

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +        + Y   I R+G
Sbjct: 814  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQLDH----KQRSYTESIRRAG 869

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    ++    
Sbjct: 870  SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGLLG 929

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLLSNA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 930  DITASGDPTRIRQILLNLLSNAIKFTER-GVVGLKLSTLGSYQGLRFEVADTGPGINADQ 988

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 989  KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048

Query: 476  RVLN 479
             V +
Sbjct: 1049 WVAS 1052


>gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1356

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 15/245 (6%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL-------------NNETYKEY 290
            E +  K+ F++++SHELRTPL +++GF+++I+ +    L               +   E 
Sbjct: 883  EVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTLFPLIPTNDHKIQRTLKQVSEN 942

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  I   G+ L  LIN++LDL+++EAGR E     +S++D++   II      ++ ++E+
Sbjct: 943  VNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVVDVLERAIIATTALFEQNDVEL 1002

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             + ID  L  +  D   + QV++NL+SNA KFT   G V+  V  T G    +SI D+G 
Sbjct: 1003 IKSIDEGLPQIIGDRDRLIQVVINLISNAAKFTDK-GFVYCKVRRT-GSEITVSIIDSGI 1060

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI+E E   +   F Q    +    QG GLGLPI + I+ +H GQ  + S+L +G     
Sbjct: 1061 GISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVEHHQGQIWVESELGKGSNFSF 1120

Query: 471  ILPNT 475
             LP +
Sbjct: 1121 SLPIS 1125


>gi|325262268|ref|ZP_08129006.1| PAS domain protein [Clostridium sp. D5]
 gi|324033722|gb|EGB94999.1| PAS domain protein [Clostridium sp. D5]
          Length = 1001

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            AK   +E        N AKS FL+ MSH++RTP+NAI+G + + +       N E  ++
Sbjct: 600 RAKHALEEAYASLNTANSAKSDFLSKMSHDIRTPMNAIMGMAAIAKNNLG---NEEKIED 656

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  SG HLL LIN++LD+S+IE+G   LSE    + D++ E  +++Q  A +K + 
Sbjct: 657 CLDKIDISGGHLLELINKVLDMSKIESGNITLSEEKFRIEDVLEEVSLIIQPDADKKRLN 716

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQ---YI 403
                  P  S V  D   ++Q++LNLLSNAVK+T   G ++V +    T   G     I
Sbjct: 717 YRTIVKKPEHSWVHGDAVRVKQILLNLLSNAVKYTNESGYINVYLEEKLTGENGVGCYEI 776

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D+G G+ E     +   F +   +  S  QG GLGL I  +++    G   + S+L 
Sbjct: 777 IVEDDGIGMTEEFCSKMFLPFERAEDSRVSEIQGTGLGLAITSNLVQMMNGTIQVESELN 836

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489
           +G   I  +           D+ ES+
Sbjct: 837 KGTRFIVTIFLRLAREKNESDSTESS 862


>gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 497

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +E  ++A   +  KS FLA+MSHE+RTPLNAI+GFS ++    +  L  +   E+   I
Sbjct: 261 LNEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLD-LTKDDIIEFTSLI 319

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            ++ Q L+ LI++ILDLS+IE+   E +   ISL  ++ E     ++  ++  +E+   +
Sbjct: 320 EKNSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNMKK-GVELLLDL 378

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                ++  D   + QVI NL++NA+KFT+  G + +     +     I ++D G G+A+
Sbjct: 379 PGQEITISTDPTRLSQVINNLVNNAIKFTSE-GNICIGYRPATSNRVKIFVEDTGTGMAK 437

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             I  +   F +G       +QG GLGL I ++I     G+  + S   +G     ILP 
Sbjct: 438 EVIEHIFDRFYKGDA----FKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILPL 493

Query: 475 T 475
            
Sbjct: 494 K 494


>gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 729

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/469 (22%), Positives = 189/469 (40%), Gaps = 24/469 (5%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
            E+       L  +S  + +  L +A + T +       +     L  + A   L ++  
Sbjct: 7   TEVSEQSSFILKSLSIFVGVVCLAIALLLTDWRSAQSLYV----VLLAFGAGAVLFRRFP 62

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI-----AL 149
            SD+        +I   V Q+            +       + +I  +   ++     + 
Sbjct: 63  ASDVIAQSWKAAQIQSEVEQLEDPSELASDADWQLREADDRHRSILDALGAIVIRCDSSG 122

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            + ++++             V  A+               A      ++  T      + 
Sbjct: 123 LVLSINDAGKRNFPTGFGIEVGKAIHLPYAEDFTPELEESAAGTTEDVALRTKHGTRWYS 182

Query: 210 SNVKILSCQAEKDDLI-------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
                +   +    +I        +   A+      R  A   + AKSRFLA +SHE+RT
Sbjct: 183 LLRLSIRDGSGGAPIIQWILTDVTDRRHAEQKLRADRDHAANASEAKSRFLAMVSHEIRT 242

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN +LG +++++  +         + YI  I  SG  LL LI+E+LD S+IEAG+ EL 
Sbjct: 243 PLNGVLGMADLLDDTS----TTAEQQNYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELE 298

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
             A+ L  +V   + +L  +A  K ++I   I P +   + +D   ++QV+ NL+ NA+K
Sbjct: 299 TGAVELTPLVERVVELLSPKAHAKGLQIGSYIAPEVPETIQSDPARLQQVLYNLVGNAIK 358

Query: 382 FTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  GG  + + V   S        ++KD GPG+ E     +   F QG         G 
Sbjct: 359 FTEQGGVSLVLQVSQDSAGNHLLEFAVKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGA 418

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           GLGL I++ +    G    ++S+L  G   +  +P  ++++   E++ E
Sbjct: 419 GLGLAISKRLAELMGSSLTVQSQLGCGSTFLLEMPLDQIVDEAIEEHSE 467


>gi|163794214|ref|ZP_02188186.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199]
 gi|159180382|gb|EDP64903.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199]
          Length = 517

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 12/354 (3%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +      ++A ++        P  + L+          + ++  +  D       A  +
Sbjct: 151 IVLAFMAAMLAGAVGFRFLVGRPLNLLLAAIRESAETGVRRVVVWNSRDELGLVTAAYNV 210

Query: 198 SFFTYITYHLFKSNVKILSCQAE------KDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                +      +       ++E        DL A +       +  + RAE  N +K++
Sbjct: 211 LVDHEVKRERDLTAANERLTRSEADLSALNRDLEARVLDRTRDLERAKLRAELANTSKTQ 270

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FL SMSHELRTPLNAI+GF++++    +GP+ +  Y E+  DIH SG+HLL +I+++LD+
Sbjct: 271 FLRSMSHELRTPLNAIIGFADLMRTGILGPMEHPRYLEFTHDIHDSGRHLLKIIDDLLDI 330

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           +RIE G+  L E A+ L  +V +C   +   A E+ + +          +  D   ++QV
Sbjct: 331 ARIEVGQETLREEAVDLDALVSDCHRTVGPMAIERGLSLHIDATAPGLVLRIDRTKIKQV 390

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFG 425
           +LNLLSNA+K T  GGRV   V  +   G        + + D G G+   +IP  LT+F 
Sbjct: 391 LLNLLSNAIKNTPRGGRVSSAVERSPTDGAGSTGDVELRVTDTGRGMTAEQIPMALTAFT 450

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +        ++G GLGLP+++ ++  HGG   + S++  G +V   LP  RV+ 
Sbjct: 451 RLDDDPMLPQKGTGLGLPLSRMMVELHGGALTLESEIGRGTQVTVRLPQARVVE 504


>gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
 gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 618

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 10/237 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +F++++SHELRTPL ++  + E +        N     +++    +    ++ +IN++L 
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 436

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363
           LSR++ G  ++    ++L D V   +    +  +            I +++      V  
Sbjct: 437 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 496

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  +   
Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 555

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612


>gi|170077522|ref|YP_001734160.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
 gi|169885191|gb|ACA98904.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
          Length = 760

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 12/316 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------EKDD 223
           +VV L  +  +   ++     G      +  T++++      + IL  ++      +K  
Sbjct: 298 LVVPLIVEQRLWGLLIAHQCHGPRRWRKNEITFLSHVAEYLAIAILQARSYQQLQEQKTS 357

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETM 279
           L    +      ++    A+  + +K  F+  MSHEL TPL +I+G S  +      +  
Sbjct: 358 LETLAQRRARELEDALLSAQVASQSKKEFIHIMSHELLTPLTSIIGLSNTLSYWTADDNP 417

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L+ E  + Y+  IH SG  L NL+ +ILD S+ EA R  L     SL  +    +   
Sbjct: 418 KKLSPEKQRVYLQTIHESGTRLRNLLQDILDFSQTEAARSVLDLQKFSLKQLCYRVLNGF 477

Query: 340 QLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           Q     + I +      +P   S +AD   + +++ +LLSNA+KFT+ GG V  ++    
Sbjct: 478 QELGDRQGINLKFINQLEPEQDSFYADPIRLEKILSHLLSNAIKFTSHGGEVTFSIWREK 537

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     +KD G GI   +IP +   F Q   ++     G G GL + + ++  H GQ  
Sbjct: 538 QKDVSFQVKDTGIGIPPQQIPLLFEQFQQLEPSMSRRYDGAGFGLALVKQLVEIHQGQIH 597

Query: 458 IRSKLREGVEVIAILP 473
           + S  ++G      +P
Sbjct: 598 VTSTPKKGSIFTVRIP 613


>gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
 gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
          Length = 857

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I  A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTIINAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGL 575

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    + + ++ V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721


>gi|29346647|ref|NP_810150.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338544|gb|AAO76344.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 641

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 131/289 (45%), Gaps = 24/289 (8%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
           +L  +L   L    +  +   +    +L               ++      + RAEE N 
Sbjct: 372 ALVVILVLGLCISLFYYFRTKRLKDDLL--------------KSEKDLRVAKDRAEESNR 417

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KS FLA+MSHE+RTPLN+I+GFS+V+    +G    E  + Y   I  +   LL LIN+
Sbjct: 418 LKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLIND 474

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLSR+EA R  L+     ++ + R+ +  + + +++   +     D     +  D + 
Sbjct: 475 ILDLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQR 533

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           M+QVI+NL+SNA KFT   G++ +             S+ D G GI + +   V   F +
Sbjct: 534 MQQVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEK 592

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                    QG GLGL I + I+    G   I S+   G   +   P  
Sbjct: 593 L----NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFMFSHPLK 637


>gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes
           Finland 1988]
 gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           R2-561]
 gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes
           J0161]
 gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
 gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
          Length = 591

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + +++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 636

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +  +  +    +  H+      +     E        + + +   +TR+ AE+ N AK
Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTP+N +LG  +++E   M         EY      S +HLL +IN+IL
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367
           D SRIE    ++   A +L ++V          A ++ + +   I P L   +V  D   
Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423
           +RQ+++NL+ NA+KFT   G+V V   W        + +  + D+G GI    + ++  +
Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +I     G GLGLPIA+++    GG     S+   G      +P 
Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493


>gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
          Length = 708

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 210 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 265

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 266 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 325

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 326 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 383

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 384 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 443

Query: 469 IAILPN 474
              +P 
Sbjct: 444 TVRIPL 449


>gi|152974373|ref|YP_001373890.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023125|gb|ABS20895.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 462

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 22/330 (6%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L    +   V       ++A     ++++ +    L+ +L   L    + T  + + ++
Sbjct: 144 FLGTNSIKQMVNGLTKQFMIAGLITFLLTV-ITIFLLSRLLTKPLIRMKHATEKMSRGDL 202

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN------LAKSRFLASMSHELRTPLNA 266
             +S +  ++D I EL  A              N        +S FLAS++HELRTPL  
Sbjct: 203 S-ISLRTSRNDEIGELASAIQTL---------ANDLHYMKKERSEFLASVAHELRTPLTY 252

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           + G++E+ +  T  P   E    Y+  I     ++ NL+ ++  L+++E   + +    I
Sbjct: 253 VKGYAEIAQKRTTQPTEREK---YLSIIKEEADYITNLVQDLFILAQMEKHNFLIEAKRI 309

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L   +   +  +     +K++ +     PSL  +  DE+   QVI+N+L+NA + +A  
Sbjct: 310 DLEKFLNRIVTKVNGIYVQKHLTVSLTCPPSL-FITLDERRFEQVIMNILNNAYRHSAEY 368

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             + +TV         ISI+D G GI   +IP +   F +   A   A  G GLGL I +
Sbjct: 369 SVITITVTAYVSH-IKISIQDTGEGIPPEDIPHIFERFYRVDKARSRATGGTGLGLAIVK 427

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            I+  H G   + SKL +G      LP  +
Sbjct: 428 EIVELHDGHITVSSKLNKGTCFTITLPREK 457


>gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 812

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 6/236 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+  ++++SHELRTPL++I GF+E++    + P      K+Y+  +H   + L  
Sbjct: 582 EIDRIKNELVSTISHELRTPLSSIYGFTELMIQRDLPPH---RQKKYLAAVHSETERLSL 638

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+ LDL R+EA R E +     L+ ++++   +  L +   +I IF   + ++  +  
Sbjct: 639 LINDFLDLQRMEANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRIF--SEETVQIING 696

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D K +RQ+  NL++NA+K++  GG + + V         +++ D G GI    +  +   
Sbjct: 697 DSKKIRQLFGNLVNNAIKYSPDGGPIEIRVT-EHNNRVTVALTDYGIGIPSSAMSELFQK 755

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F +   +      G GLGL I + I   H G+  + S   +G      LP      
Sbjct: 756 FYRVDNSDTRQIGGTGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLPLNPTPP 811


>gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 948

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 8/304 (2%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + +     H+    + G     +           +++V+ L   A +     +   ++  
Sbjct: 361 ADRFTFFRHLSVPVIEGNNVRMVMGVGNKAEDYNQNDVRQLQTVANEVGKFVQRRRSEIA 420

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                  A + N AKS FLA MSHE+RTP+NAI+G    +             + Y+   
Sbjct: 421 LRIASDEALKANRAKSDFLAVMSHEIRTPMNAIMG----MTELLEETELTTIQRNYLSIC 476

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SGQ+LL LIN+ILD+S++EAGR E++ +   L  I+ +   ++  RAQEK +     I
Sbjct: 477 RSSGQNLLQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKGLNQIVYI 536

Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGP 410
           DP++ ++   D+  +RQ+++N L N+VKFT  G     V             I + D G 
Sbjct: 537 DPAVPTILLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLVIHVVDTGI 596

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + E   +  +F Q   + +  + G GLGL I   ++A   G   + S+  +G     
Sbjct: 597 GIEQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAGKGSTFTL 656

Query: 471 ILPN 474
            LP 
Sbjct: 657 TLPL 660


>gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
 gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
          Length = 620

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           ++ +F++++SHELRTPL ++  + E +        N E   +++    +    ++ +IN+
Sbjct: 379 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KNPEIAPKFLEVTQQETSRMIRMIND 436

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDPSLSSV 361
           +L LSR++ G  ++    ++L D V   +    +  +           I +++      V
Sbjct: 437 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWV 496

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  + 
Sbjct: 497 EIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQ-NQNHVILSISDQGLGIPRKDLGKIF 555

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 556 DRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYEPMTEE 614


>gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 3470

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 1/230 (0%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E + AK  F+A++SHELRTPL  I GF +++ L  +G L++   +E +  +  +   ++ 
Sbjct: 3228 EADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDP-QREMLNTVKTNAMRMVG 3286

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+ ++L++ R+EAG+  L+ +   +  +VR+ +    L  ++KN+ +  ++D +L  +  
Sbjct: 3287 LVEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDTLPLIEY 3346

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D K + QV+ N++SNA+K+T  GG V +       +   + +KD G G+   +  ++   
Sbjct: 3347 DSKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQKSMFKR 3406

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +    ++    G GLGL IA+S +  H G   ++S   EG      LP
Sbjct: 3407 FYRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456


>gi|325921960|ref|ZP_08183768.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547559|gb|EGD18605.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 913

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 6/288 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S   +     E+  + A+L+++       R +AE  +  K  FLA++SHELRTPL
Sbjct: 486 QAMARSASHLAGIVIERTRVDAKLKLSLQAETSARGQAEHASRVKDEFLATLSHELRTPL 545

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+S +++ +   P       + +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 546 NAILGWSRLMQSDIFEP---ANLGKGMVIIERSARAQTQIIDDLLDMSAILSGKIRLQPE 602

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +  + R  + ++Q  A  + I +            + D   ++QV+ NLLSNA+KFT
Sbjct: 603 HFDIAGLARSTVELMQPAAFAREISLELDAPTQGELWFFGDAGRLQQVLTNLLSNALKFT 662

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           A GG V V +         + ++D+G GIA   +P V   F Q          G+GLGL 
Sbjct: 663 APGGTVRVALDI-EDERLRLCVQDSGMGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 721

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           I++ ++  HGG     S+   +G     +LP    ++ +   + E+ Q
Sbjct: 722 ISRQLVDLHGGSLGASSEGEGKGSMFTIVLPFQHGVSDLRPASTETKQ 769


>gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1412

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 163/400 (40%), Gaps = 27/400 (6%)

Query: 102  EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            +    R  +    +  G       L      +   + I     +L  + ++++  +   +
Sbjct: 695  QAARSRRTIAADALPAGYLAASSGLGRTEELSLLVVPIVVEDQVLGVIELASIRPYPAVH 754

Query: 162  AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKIL 215
              FL      V ++   I++    D  L                       L  SN ++ 
Sbjct: 755  RAFLDQLMETVGVNLNTIVANARTDELLGESQRLTSELQARSQELQARQEELQASNAELE 814

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAIL 268
               A       ++E      ++ R+  EE        +  KS FLA+MSHELRTPLN++L
Sbjct: 815  EKAALLAAQNRDIETKNLEIEQARQELEERAHQLSLASTYKSEFLANMSHELRTPLNSLL 874

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
              ++++       L      EY G IH +G  LL LIN+ILDLS++EAG+ +LS   ++L
Sbjct: 875  ILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDLSPEPVAL 933

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              ++       +    +KN+    +  P +   +  D+  +RQV+ NLLSNAVKFT   G
Sbjct: 934  RSLLDYAEATFKPLTGQKNLAFTVRTSPDVPERLVTDDYRLRQVLRNLLSNAVKFTEQ-G 992

Query: 388  RVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            RV + +G              G      + D G GIA   + +V  +F Q          
Sbjct: 993  RVELRIGLAPQDRIPEGVRRGGPVLAFQVSDTGIGIAPQHLESVFGAFQQADGTTSRKYG 1052

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            G GLGL I++ I    GG     S L  G      LP +R
Sbjct: 1053 GTGLGLSISREIAYLLGGAITAESVLGAGSTFTLFLPVSR 1092


>gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055]
          Length = 613

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++  I    + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 565

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++ + ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLEMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE    E+  S ++L ++    I  LQ +A  KNIEI  +I+  +  +
Sbjct: 395 ESLVMDLLDLSHIEQQN-EIETSYMNLSELAYNTIDNLQTQATNKNIEIKSEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ ++    +V V V    G+   + I+D G GI+  +   + 
Sbjct: 453 EAHENKVAQVITNLLSNAINYSLEDSKVIVRVYR-EGKKVNLEIQDFGIGISAKDQKHIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  + SK  EG       
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRISVSSKPGEGSTFKVTF 562


>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 5 str. 8401]
 gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
          Length = 949

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|332663617|ref|YP_004446405.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332431|gb|AEE49532.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 572

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 18/297 (6%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           M      F   I   L++++ +           + +LE  +      ++RAE+    K R
Sbjct: 1   MWVGYSFFILLIAAILYRNSQQKSRAVNVFKQALIKLEATQIQLIAQKERAEQSEKFKQR 60

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHE+RTPL+ I GF++++   ++    +E  + ++  I+ S + L  ++N +L+L
Sbjct: 61  FLAHMSHEIRTPLHGIAGFTDLLLETSL----SEKQRRWLSSIYHSTERLDEVVNAVLEL 116

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S++EAG  +L +   S   +  +    L LRAQ K I +   +  ++  ++  D   + Q
Sbjct: 117 SKLEAGELKLRKIPFSPAKVAADVQESLSLRAQNKGINLLLDVHKNVPGALRGDPTRLYQ 176

Query: 371 VILNLLSNAVKFTAIGGRVHV------TVGWTSGR------GQYISIKDNGPGIAEGEIP 418
           +++NL  NAVKFT   G V +      ++  TS           + I D G GI   +I 
Sbjct: 177 ILMNLTGNAVKFTEK-GSVTIKMDCAESIERTSDDPATNWVTLILRIIDTGIGIPAEKIT 235

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            V  SF Q    + +   G GLGL + Q ++  HGG   + S L  G      LP  
Sbjct: 236 AVFDSFEQAGEDMVARYGGTGLGLTVTQELVQLHGGDIQVESALGVGTTFTVKLPFA 292


>gi|295107846|emb|CBL21799.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 672

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 8/255 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E + +AE  N AKS FL +MSH++RTP+NAI+G++E+           +    
Sbjct: 279 KQEEELREAKLKAECANKAKSSFLFNMSHDIRTPMNAIIGYAELASRHL---QETDKLGR 335

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I   G+ LL ++  +LDL+RIE  + E+  +  ++ +    CIIM Q +A+ K+  
Sbjct: 336 YLEKIQICGKELLAMLGNVLDLARIENNKVEMEYTVSNVHECFENCIIMFQQQAESKSQT 395

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYIS 404
           +          V+ D   + +V LN++SNA+K+T  GG +       +          I+
Sbjct: 396 LSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGTISCNVVQKSCEKEDWCNMIIT 455

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I DNG G++E     +  +F +      S   G G+G+ I + ++    G   ++SK  E
Sbjct: 456 ITDNGIGMSEEFQKRIFETFERERNTTLSHIDGSGIGMGITKKLVELMDGTIEVKSKQGE 515

Query: 465 GVEVIAILPNTRVLN 479
           G +    +P  +   
Sbjct: 516 GSQFTVTIPCRKASE 530


>gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
 gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
          Length = 591

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + +++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
 gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
          Length = 616

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL +I  ++E +        N E    ++  I      ++ +I
Sbjct: 376 DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--ENKEIAPGFLKVIETETDRMMRMI 433

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-----QEKNIEIFQKIDPSLSS 360
            ++L+LSR++  R  L +  I++ ++V   +   ++       +EKN  I   I      
Sbjct: 434 TDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDITQRDLW 493

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D+  + QV+ N+++NA+K++  GGR+ V +  T      +S+ D G GIA  +IP +
Sbjct: 494 VELDQDKITQVLDNIINNAIKYSPDGGRIIVRLMETHTD-IIVSVSDEGLGIARKDIPHL 552

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A   A  G GLGL IAQ ++  HGG+  + S   +G      LP
Sbjct: 553 FDRFYRVDKARSRAMGGSGLGLAIAQEVVQLHGGKIWVNSIENKGSTFFVSLP 605


>gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus
           UQM 2246]
          Length = 461

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A+ SHEL+TP+  I    E ++       +  T   ++  + R    +  
Sbjct: 227 QAERMRQDFVANASHELKTPIAVIKSSVEALQDGA--AEDPHTLASFLEQVARESDRMTY 284

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--- 360
           L+ ++L LSRIE+G   L    + L   + +C+     RA  K + + +K  P   +   
Sbjct: 285 LVKDMLSLSRIESGSLGLEPRVVVLDREISDCMERHHPRADTKTLTLVEKPPPDAPANVA 344

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
            WAD   +RQV+ NL+ NA+K+T  GGR+ V  G T+       ++D G GI EG++  V
Sbjct: 345 AWADPDALRQVMDNLVDNAIKYTPNGGRITVRWGATAD-TVSFEVEDTGVGIPEGDVNRV 403

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A   AE   GLGL I + ++    GQ  + SKL +G      LP  
Sbjct: 404 FERFYRVDRARGRAEGSTGLGLSIVKHLVQAMRGQVRVNSKLGKGTTFRVTLPRA 458


>gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 953

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 16/252 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                K  F + +SHELRTPL +I G   ++    + P  +E  +  IG    S + L+ 
Sbjct: 696 AIERMKDEFTSVVSHELRTPLTSIHGALNLLSTGLIQP-QSERGQRVIGIAADSAERLVR 754

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSV 361
           L+N+IL+L R+E+G+  LS+  ++  +++ + +  +Q+ A    I++        S    
Sbjct: 755 LVNDILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEVSPQAIESEIEF 814

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDN 408
            AD   + QVI NLLSN +KF+  G  + +TV                       ++KD 
Sbjct: 815 EADSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATILFTVKDQ 874

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++ ++   F Q   +    + G GLGL I ++I+  HGG+  + S + EG   
Sbjct: 875 GRGIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVESTVGEGSSF 934

Query: 469 IAILPNTRVLNF 480
              LP       
Sbjct: 935 YFTLPQQTAAAA 946


>gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 915

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 8/284 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L + +   +    +    I E +  +      R  AE    +KS FLA+MSHELRTPL +
Sbjct: 501 LIRDDHGRVVQFHDVVRDINETKRLEDELIAARDVAEAAARSKSEFLANMSHELRTPLTS 560

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++GFS +++     P      + Y   I  S + LL++IN+ILD S++EA    L   A 
Sbjct: 561 VIGFSGLLQSSEALPAAE---RRYADRIATSSEALLSVINDILDYSKLEADAVGLDPVAF 617

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
               + R    +++ + + K + +       L  ++  DE  +RQV LN LSNAVKFT  
Sbjct: 618 DPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLRQVTLNFLSNAVKFTNT 677

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + + VG        +++ D+G G+A  +I  +   F Q   +      G GLGL I 
Sbjct: 678 -GEIRLDVGSV-DGRMRVAVTDSGIGVAADKIDALFERFTQADASTTRVYGGTGLGLAIC 735

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHE 487
           + ++   GG+    S+   G      +P      L+ + ED  E
Sbjct: 736 RRLIEMMGGEIGATSRPGHGSTFWFEVPMIAAEPLDAMVEDAVE 779


>gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           Australia 94]
          Length = 613

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++  I    + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 623

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 7/319 (2%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSL 234
            A+         L         +   +T  L      +L    +++    +A        
Sbjct: 165 SALEHRRTTLAQLQLAARRHQLWTLILTGALMSGAALLLMWLVDRNIGRPMATATAVARQ 224

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            D           AK  FLA+MSHELRTPL +ILG SE +    +GPL+    ++ I  +
Sbjct: 225 MDRANAELARAAQAKDEFLAAMSHELRTPLTSILGLSETMGDGLLGPLS-AQQEKAIRMV 283

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           H +G HLL LIN+ILD+SR+ +G+  L    + +  +    + ++   A+ K +++   I
Sbjct: 284 HENGTHLLELINDILDMSRVASGQMHLRWDQVPVDQLCEASLRLIGPSAKRKGLKVSLTI 343

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIA 413
           DP    V  D + ++Q+++NLL NAVKFT  GG + + V            I D G GI 
Sbjct: 344 DPQARLVRGDSRRLKQMLVNLLGNAVKFTPEGGAIGLDVQADPEHGELRFGIWDTGVGIP 403

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472
             +   +   F Q          G GLGL +   +   H G+  + S++  G      L 
Sbjct: 404 REQFERLFQPFVQLDSRPARQYDGTGLGLALVSGMAELHQGRIQVESEVGRGSRFEIRLP 463

Query: 473 --PNTRVLNFIPEDNHEST 489
             P  +  + +  D  ES 
Sbjct: 464 WDPAAQRADRLQPDPAESN 482


>gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex
            domain structure [Aromatoleum aromaticum EbN1]
          Length = 1519

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 15/273 (5%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I+E +   +     R+ AE+ + AKS FLA+MSHE+RTP+N ++G  EV+   ++  
Sbjct: 839  LRDISERKAFIAALTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLARTSL-- 896

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +E   + +  I  S   LL +I++ILD S+IEAGR +L    +S+ D+V      L  
Sbjct: 897  --SEHQADLVATICGSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLP 954

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A   ++++   + P +   V ADE  +RQV+ NL+ NAVKF+A    V   V       
Sbjct: 955  LAARLDVDLSVFVSPEVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVA 1014

Query: 401  QY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    +SI DNG GI   ++  +   F Q   +      G GLGL I + ++    G
Sbjct: 1015 DVVPLQLAVSIVDNGIGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEG 1074

Query: 455  QFLIRSKLREGVEVIAILPN----TRVLNFIPE 483
               +RS+  +G      +P      +    +PE
Sbjct: 1075 GIKVRSEPGQGSTFTVTIPFVLSDEQPAPILPE 1107


>gi|27367166|ref|NP_762693.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
 gi|50401046|sp|Q8D5Z6|LUXQ_VIBVU RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|27358734|gb|AAO07683.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
          Length = 857

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238
             + +A   AT       I   +F+ N+  +  +     +I + +       A+  S+  
Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+    ++ FLA MSHE+RTPLN ILG +++++       N+    + +  +  SG
Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
           +HLL ++N+ILD S+IE G++ + +   +  D +     + +   +EK +        P 
Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412
              +  D+  + Q++ NL+SNAVKFT   GR+ V+        +      I + D G GI
Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEKFARSEHSILSIQVSDTGIGI 648

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++ ++   F Q          G GLGL I ++++    G+  ++S+L +G      +
Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708

Query: 473 PNTR 476
           P  +
Sbjct: 709 PVEK 712


>gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
 gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
          Length = 1988

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 16/236 (6%)

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 1269 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NAEQLEHVNIIKASTDSLLNLIND 1324

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            ILDLS++EAG  +LS   + L  ++ E   +    A +K +E+   ++  +   V  D+ 
Sbjct: 1325 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKF 1384

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGE 416
             +RQV+LN++ NA+KFT   G + +               +       + D G G  + E
Sbjct: 1385 RIRQVLLNVVGNAIKFTER-GEIFIRCKVQPPDRSRPLKENETMVRFEVIDTGQGFTDAE 1443

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +   F Q   +      G GLGL I+   +  HGG+   RS   +G      +
Sbjct: 1444 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1499


>gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 472

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/253 (37%), Positives = 148/253 (58%), Gaps = 3/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              ++A+         + ++  E+EN  K +F AS++HELRTPLNAI+GF+E+I+ ET+G
Sbjct: 209 NTKMLAKQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLG 268

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            ++N  YKEY  DI+ +G HLL LIN++LD S+ E+    + +   +L  IV  CI ML 
Sbjct: 269 SMDNSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIVDSCINMLL 328

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
            + +E  I + ++I      V AD K M+QVI+NLLSN++KFT  GG + + V       
Sbjct: 329 PKLRETEINLKKEIPNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIRMVVKENIEKN 388

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I   DNG GI + +I  V++ FGQ     ++  +G G+GLP+++ ++   GG F I+
Sbjct: 389 LLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGTFDIK 446

Query: 460 SKLREGVEVIAIL 472
           S+ + G  +    
Sbjct: 447 SEAKLGTTITLNF 459


>gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 2314

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 16/236 (6%)

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 1621 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NAEQLEHVNIIKASTDSLLNLIND 1676

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            ILDLS++EAG  +LS   + L  ++ E   +    A +K +E+   ++  +   V  D+ 
Sbjct: 1677 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKF 1736

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGE 416
             +RQV+LN++ NA+KFT   G + +               +       + D G G  + E
Sbjct: 1737 RIRQVLLNVVGNAIKFTER-GEIFIRCKVQPPDRSPPLKENETMVRFEVIDTGQGFTDAE 1795

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +   F Q   +      G GLGL I+   +  HGG+   RS   +G      +
Sbjct: 1796 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1851


>gi|51832271|gb|AAU10319.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + + + +++ L  +   +   R+ AE  N  KS FLA+MSH++RTP+N I+G +++  
Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHKIRTPMNGIIGMTQLTL 769

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +        +E +  +H     LL +I++ILD+S+IEA R  + E   S+   +   
Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +     RA E+ + +   +   +   V  D   +RQ+ILNL+ NA+K T   G V V + 
Sbjct: 826 LKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKVAIS 884

Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
               +           ++ D G GI   ++  +  +F Q   +      G GLGL I++ 
Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944

Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471
           ++   GG+  + S   +G      
Sbjct: 945 LVTLMGGRMWVESDAGKGSVFYFT 968


>gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1619

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 10/259 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I E   A+    + +  A+E + AKS FLA+MSHE+RTP+NA+LG  +++    +  
Sbjct: 872  NRDITEQLQAEQELRQAKALADEASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRTAL-- 929

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              +    +Y+G   ++G  LL+L+N+ILD S+IEAG+ +L     S+ +++R+  ++L  
Sbjct: 930  --DARQADYVGKAQKAGTSLLSLLNDILDYSKIEAGKLQLDLHPFSMEELLRDLSVVLSG 987

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
              Q   +EI  ++   +   +  D   ++QV++NL  NA+KFT   G V + V     + 
Sbjct: 988  NHQRPEVEIVYRLGRDIPDCLIGDSLRLQQVLINLAGNALKFT-EHGHVLLNVDLLHRQP 1046

Query: 400  ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  ++++D+G GI+  +   +  SF Q   +      G GLGL I++ ++   GGQ 
Sbjct: 1047 QAVTLRVTVEDSGIGISAEQQQRIFHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQL 1106

Query: 457  LIRSKLREGVEVIAILPNT 475
             + S L EG      LP  
Sbjct: 1107 QLHSVLGEGSRFWFDLPLA 1125


>gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 659

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 10/263 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +++++AE  +  KS FLA+MSHE+RTP+N I+G  ++++   +    +    EY+  
Sbjct: 285 ALLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTTDL----DAEQLEYVDY 340

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
             +S   L +L+ +ILDL+ +EAG+ EL  +   + + +     +    A+EK + +   
Sbjct: 341 ALKSSSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFD 400

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGP 410
           I P +   V  D   ++QV++NL+ NA+KFT   GRV V V       +     ++D G 
Sbjct: 401 ISPEVPETVDGDALRLQQVLVNLVGNALKFT-EHGRVDVEVFLNDKRAKSLLFKVRDTGI 459

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA+     +   F QG  + K + QG GLGL I + ++   GG+  + S L +G     
Sbjct: 460 GIADDIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSF 519

Query: 471 ILPNTRVLNFIPEDNHESTQYKC 493
            +P   V   +     +    K 
Sbjct: 520 TMPL--VTEELDTSAEKDQTLKV 540


>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
           Bt4]
 gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 987

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 168/435 (38%), Gaps = 34/435 (7%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           +LV           +   +SL+T            L  +     +           LL  
Sbjct: 321 VLVHAYSWKTIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYRRA--QRLLES 378

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           ++          +        +   + +             +N ML  +   S  P+   
Sbjct: 379 EVLNRAILRTAPVGLGLLSAHDGSVLLQ-------------NNAMLELSARTSGEPLPNR 425

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAE 227
           L      +    +     +L   L+     +  ++ ++NV     +     L     I+ 
Sbjct: 426 LWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISM 485

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + ++    E R  +++ N AKS FLA+MSHE+RTPLNAI+G  E++    +        
Sbjct: 486 RKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQ 541

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K 
Sbjct: 542 SERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKG 601

Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY 402
           +++   +   ++  +  D   +RQ++ NL+ NA+KFT   G + V V             
Sbjct: 602 LQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIE 660

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI    I T+   + Q   +I     G GLGLP+ + +    GG   + S  
Sbjct: 661 IWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLP 720

Query: 463 REGVEVIAILPNTRV 477
             G  V  +LP    
Sbjct: 721 DFGTTVTVVLPLREA 735


>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 641

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 26/315 (8%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
            H + + +  +L    +F   +   + K   + L    E  +    +  + +  DE+ + 
Sbjct: 193 RHKVYLIVGLVLVLITAFSLIVAVRIKKPLQQALELLQEIPEQYRPV-QSVTALDESNRL 251

Query: 242 AEEE-----------------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                                + AK  FLA MSHE+RTP+NAI G +E+   +      +
Sbjct: 252 LRAMVNLVTALKAAKEQAEAASSAKGAFLAQMSHEIRTPMNAISGLTELALDQA----PS 307

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I  +  HLL+LIN++LD S++EAG  EL +   +L   +   ++   +R +
Sbjct: 308 AQQRELLEGISHAANHLLSLINQVLDFSKLEAGIVELEQIPFNLRQTLTATLLPFSVRVR 367

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR--G 400
            K +     +  +L   V  D   +RQV++NL+ NAVKFT  G   + V  G  +G    
Sbjct: 368 SKGVRFETVLADNLPTRVIGDPTRLRQVLVNLVGNAVKFTRQGCIEIDVEKGEQTGNHCE 427

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I ++D G GI + +I  +   + Q + +      G GLGL I + ++    G   + S
Sbjct: 428 LRIMVRDTGIGIPQEKIAQIFAPYSQAAASTTREFGGTGLGLSIVKQLLEVMQGTITVES 487

Query: 461 KLREGVEVIAILPNT 475
           +   G      +P  
Sbjct: 488 QPGAGTCFSVSVPVE 502


>gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 621

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + + LL LI++ILDLS+IEAG +++    +    +  E +  +Q+RA 
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +EI    +    +  +D+  + QV+LN ++NA+KFT+  G + +     +G     S
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F + +  I     G GLGLPI QSI+   GG+  + S+  +
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 611 GSCFWFTHP 619


>gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 615

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E  + +   A+ K I I    D     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTDVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +    G   YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVKIK-DCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1051

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/243 (34%), Positives = 124/243 (51%), Gaps = 17/243 (6%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + AKS FLA MSHELRTPLN ILG  E+          +E   +Y+    +SG  
Sbjct: 664 AAEAASRAKSMFLAHMSHELRTPLNGILGMVEL----AHMACADEKQCKYLELAKQSGHT 719

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL++IN+ILDL++IEAG+ EL     SL +++   I  L +  + K +E+  ++DP +  
Sbjct: 720 LLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVTWRMDPRIPD 779

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDN 408
            +  D+  +RQV+ NL+ NA+KFT   G V V +G + G                SI D 
Sbjct: 780 RLAGDQGRLRQVLANLVGNALKFTER-GSVSVDLGLSRGGFETRPYCPAGMRLIFSIADT 838

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++P +  SF Q   +      G GLGL I++ ++    G     S + +G   
Sbjct: 839 GIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIWAESVVGKGSTF 898

Query: 469 IAI 471
              
Sbjct: 899 SFT 901


>gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 621

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + + LL LI++ILDLS+IEAG +++    +    +  E +  +Q+RA 
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +EI    +    +  +D+  + QV+LN ++NA+KFT+  G + +     +G     S
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F + +  I     G GLGLPI QSI+   GG+  + S+  +
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 611 GSCFWFTHP 619


>gi|284052588|ref|ZP_06382798.1| sensory box histidine kinase/response regulator [Arthrospira
           platensis str. Paraca]
          Length = 655

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N +LG + ++    +        K+++  I  S  HLL +IN+ILD S++
Sbjct: 1   NMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSANHLLAIINDILDFSKL 56

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EA   EL +    L + +   I +L  +A+ K IE+   +D ++   +  D   +RQV+L
Sbjct: 57  EAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLL 116

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQG 427
           NL+SN +KFT   G V + V                 ++D G GI       +  +F Q 
Sbjct: 117 NLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQV 175

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +      G GLGL I + ++   GG+  + S + +G      LP +
Sbjct: 176 DASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFS 223


>gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 589

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TP+ +I GF E ++   M          ++  I    +
Sbjct: 360 RKLE---QIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAE--RFLEIIDIEAE 414

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE    + +     L  +V +   ++Q  A+EK I +   +   + 
Sbjct: 415 RLHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL 474

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   M+Q+I+NL+ N +K+    G V V  G+       IS+KD G GI    IP 
Sbjct: 475 -MKANINRMKQLIMNLVDNGIKYNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +          G GLGL I + I+  + G+  + S + EG E I  +P
Sbjct: 533 IFERFYRVDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 621

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + + LL LI++ILDLS+IEAG +++    +    +  E +  +Q+RA 
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +EI    +    +  +D+  + QV+LN ++NA+KFT+  G + +     +G     S
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F + +  I     G GLGLPI QSI+   GG+  + S+  +
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 611 GSCFWFTHP 619


>gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 615

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G   L+    +++
Sbjct: 383 AVQLL-DFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E  + +   A+ K I I    +     +  D   + ++ILNLLSNA+KFT  GG +
Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +   S    Y+ IKD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNIK-DSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G+  I S+L +G E I  LP 
Sbjct: 561 EMHNGKVTINSELGKGTEFIIKLPA 585


>gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 637

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++E++     +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLLEMD-----SPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L    +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + +  T+ +   +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG   I  LP  RV    
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPFVRVQPPA 630


>gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 621

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + + LL LI++ILDLS+IEAG +++    +    +  E +  +Q+RA 
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +EI    +    +  +D+  + QV+LN ++NA+KFT+  G + +     +G     S
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F + +  I     G GLGLPI QSI+   GG+  + S+  +
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 611 GSCFWFTHP 619


>gi|163792880|ref|ZP_02186856.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181526|gb|EDP66038.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 743

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 154/380 (40%), Gaps = 17/380 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W  L    P           K   L+ A +      ++    +        +A+     
Sbjct: 105 VWASLPDEAPTRVDQAAEIREKLEILVEAAASGGFRFWLEAERLIEQTKTFTLAVVAVVA 164

Query: 180 MSMHVLDISLAGMLATALSFFTY----ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            +   +   +   +   L         +        V  L  + E   + A L V K   
Sbjct: 165 AAALAVAAWMIQTIVRPLGRMERSMTALAGGERDVAVPDLGRRDEVGAMAAALAVFKDAM 224

Query: 236 DE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            E    ++RAE    AKS FLA MSHE+RTP+N ++G + ++    +   +    +E  G
Sbjct: 225 AEVRDAKERAEAATRAKSEFLAMMSHEIRTPMNGVIGMTRLLLDGDLAARD----RETAG 280

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  SG+ L+ ++N+ILDLS++EAGR EL      +  +V   + ++  RA EK + +  
Sbjct: 281 VVLESGEALMTILNDILDLSKLEAGRLELEVIDFDVRRLVEGTVTLMSGRASEKGLALQA 340

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407
           ++   +   +  D   +RQV+LNL+ NAVKFT   G V V V  +          + + D
Sbjct: 341 RVADDMPQYLRGDAGRLRQVVLNLVGNAVKFTDA-GSVTVRVTRSGSDQTTVPLVLEVID 399

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+ E     +   F Q   +I     G GLGL I++ ++   GG   + S    G  
Sbjct: 400 TGIGMDETARSRLFQEFAQADASIARRYGGTGLGLSISKRVVDRMGGAIEVDSASGRGST 459

Query: 468 VIAILPNTRVLNFIPEDNHE 487
               L     +    + + E
Sbjct: 460 FRVHLSIPEGVAPTADSDDE 479


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 9/298 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             + ++   + ++        AE       I+E +  +    + R+RAE  +  KSRFLA
Sbjct: 357 GHYVWLESTMRRACDTDGRQTAEVIGITRDISERKRHEMELLDARERAETASRTKSRFLA 416

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAI+GFSE++ ++  G L +  Y EY   I+ SG  LL+LI++ILD+S+I
Sbjct: 417 NMSHELRTPLNAIIGFSEILRMQMFGALGHPRYTEYAQLINESGALLLDLISDILDMSKI 476

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF--QKIDPSLSSVWADEKGMRQVI 372
           EAG+YEL    +    ++  C+ +++ RA+E  I +    +      ++ ADE+ ++Q++
Sbjct: 477 EAGKYELHPETVDAAALIESCVRLVRGRAEENGIHLVKKIQCAELGGTLVADERALKQIM 536

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNLLSN+ KFT  GGR+ V +  T       ++ D G GI   +I  +   F Q +    
Sbjct: 537 LNLLSNSAKFTPAGGRISVALTETEE-TICFAVADTGRGIPADQIARLGQPFEQIATDAA 595

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR---VLNFIPEDNHE 487
            +++G GLGL + +S+   HGG   I S+L  G  V   LP      + +  P    E
Sbjct: 596 LSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLPKIPYCALPSSAPAAEPE 653


>gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1101

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+  +  +    E R + +E +  KS FLA++SHE+RTP+N ILG +  ++   +   
Sbjct: 572 EDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTGELKESHLSG- 630

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 + +  I  +  +LL +IN++LD SR EAG  EL  + + L  +V E   ++  +
Sbjct: 631 ---EQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVSEAEQIVAFQ 687

Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV------TVGW 395
            +++ I     +D +    ++ D + +RQV++NLL NA KFT  G    +          
Sbjct: 688 IRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLVHLQPGKAEA 747

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           +  +     + D G GI+E     +  +F Q   +I     G GLGL I++ ++   GG 
Sbjct: 748 SDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISKHLVGMMGGT 807

Query: 456 FLIRSKLREGVEVIAILPNT 475
               S    G      LP  
Sbjct: 808 IGFESCQGVGSTFWFTLPLQ 827


>gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 315

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 3/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K+ F++ +SHE+RTPL AI G  E++    +     E  ++ +     + + LL 
Sbjct: 86  EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEA-EQMLKIGVSNSERLLR 144

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362
           L+N IL+L  +++G+  L+     +  +V++ +  ++  AQ+ +IEI     D   + + 
Sbjct: 145 LVNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEIL 204

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE+ + QV+ NLLSN++KF+  G +V +     S +   +++KD G G+   ++ T+  
Sbjct: 205 ADEETIVQVLTNLLSNSIKFSHSGNKVEIYAT-VSNKEIIVAVKDYGKGVPPHKLETIFE 263

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F Q  ++    + G GLGL I ++I+  H G+  + S L  G      LP 
Sbjct: 264 RFEQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLPL 315


>gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 502

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 10/273 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
               + V  ++   + ++AE EN AK  FL+ MSHELRTP+NA++G +E+     M    
Sbjct: 100 WFNRMRVKSAVMQSSLEKAEAENRAKGAFLSRMSHELRTPMNAVVGLAELA---GMTEGV 156

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +E +  +  S  +LL+LIN+ILD+SR+++G  E +    SL +++ E   M++  A
Sbjct: 157 PENVREMLVKLRASSHYLLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEA 216

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
            ++ +    + D   S V  D   +RQV++NLLSNA KFT  GG V + V   +G     
Sbjct: 217 GKRGLICEMEADVDHSRVTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSA 276

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIA  +   +  +F Q         QG GLGLPI++SI+   GG+  ++
Sbjct: 277 DFDFRVTDTGVGIAPEDQERIFDTFEQMGTNYSR-SQGTGLGLPISRSIVQLMGGELRVK 335

Query: 460 SKLREGVE--VIAILPNTRVLNFIPEDNHESTQ 490
           S+   G E      LP   +     + N   T 
Sbjct: 336 SEPGHGSEFYFTLTLPLDSLSEECEDGNPMVTD 368


>gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 606

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + +    +++AEE +  KS FLA+MSHE+RTPLNAI+GFS           + 
Sbjct: 367 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 422

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + + LL LI++ILDLS+IEAG +++    +    +  E +  +Q+RA 
Sbjct: 423 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 482

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +EI    +    +  +D+  + QV+LN ++NA+KFT+  G + +     +G     S
Sbjct: 483 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 539

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   +   + T F + +  I     G GLGLPI QSI+   GG+  + S+  +
Sbjct: 540 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 595

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 596 GSCFWFTHP 604


>gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 391

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 14/265 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +            +   + A+      +++AE+ +++ S FLA+MSHE+RTPLNAI GF+
Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLANMSHEIRTPLNAITGFA 189

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+          E   +Y   I  +   L+ L+N+ILD+S+IEAG  E  ++ + +  +
Sbjct: 190 EVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQL 245

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           + +   + Q+R  +   +I    +PS     +  D   + QV+ N   NA+KFT  G   
Sbjct: 246 LSDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303

Query: 390 HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +G+ +     Y  +KD G GI   ++P V   F +        ++G GLGL I+Q+I
Sbjct: 304 -IRLGYEARNTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A  GGQ    S   EG      +P
Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|37676880|ref|NP_937276.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|50400926|sp|Q7MD16|LUXQ_VIBVY RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|37201424|dbj|BAC97246.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 857

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238
             + +A   AT       I   +F+ N+  +  +     +I + +       A+  S+  
Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+    ++ FLA MSHE+RTPLN ILG +++++       N+    + +  +  SG
Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
           +HLL ++N+ILD S+IE G++ + +   +  D +     + +   +EK +        P 
Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412
              +  D+  + Q++ NL+SNAVKFT   GR+ V+        +      I + D G GI
Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEQFARSEHSILSIQVSDTGIGI 648

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++ ++   F Q          G GLGL I ++++    G+  ++S+L +G      +
Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708

Query: 473 PNTR 476
           P  +
Sbjct: 709 PVEK 712


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 10/274 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   L     +I +   E   +  EL       ++ ++ A++ N AKS FLA++SHE+RT
Sbjct: 253 VEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEADKANKAKSEFLANISHEIRT 312

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N I+G  +++++  +        KEY+  +  S + LL ++N ILD+S+IE+G++EL 
Sbjct: 313 PMNGIIGIIDLLKVTELNN----NQKEYLDMLSNSSRLLLGILNTILDISKIESGKFELI 368

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
               ++   +      L +   +KN+E+F  IDP +   +  DE  + QV++N+++NA+K
Sbjct: 369 LKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYINFDLIGDEIRLNQVLINIINNAIK 428

Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G++   V   +          S+KD G GI E     +   F Q  +       G
Sbjct: 429 FT-EMGQIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKFIQQDMTYTKKYDG 487

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            GLGL I++ I     G     S   +G      
Sbjct: 488 TGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521


>gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
 gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger
           B]
 gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum]
 gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
          Length = 613

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++  I    + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1125

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 128/272 (47%), Gaps = 12/272 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  +      +  A++ N AKS FLA+MSHE+RTPLNAILG  E++    + PL  
Sbjct: 495 MTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHSALNPL-- 552

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +  I  S   LL +I ++LD S+IEAG   L      L+D +   + M    A 
Sbjct: 553 --QRDRLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAAH 610

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----G 398
            K I +  +   ++   +  D   + QV+ NLLSNA+KFT   GRV +++         G
Sbjct: 611 LKRIALVGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQ-GRVTLSLDVERLPCARG 669

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GI    + T+  +F Q   +I     G GLGL + Q ++   GG   +
Sbjct: 670 GMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTIDV 729

Query: 459 RSKLREGVEVIAILPNTRVLNF-IPEDNHEST 489
           +S+  +G      +P  R      P     +T
Sbjct: 730 QSEPGQGSRFTVRMPLDREDPAGAPLVEDAAT 761


>gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
 gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
          Length = 857

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 785

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 12/315 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             A   +  P +       ++     +I L  +       F+     +     ++ S   
Sbjct: 326 LLAFGATDRPALRGWLAAPLVGRDGRNIGLIQLSDKHEGDFSEEDEAIAVQLAQLASVAI 385

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  E E A       +  AEE N  K  FLA++SHELR+PL AILG+++++    +
Sbjct: 386 ENTRLF-EAEQA------AKVDAEEANRLKDEFLATLSHELRSPLTAILGWTKLLRQVDL 438

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +        +  I R+      LI ++LD+SRI AG+  +  +A+ L  ++   I  +
Sbjct: 439 GAV---RAAHALEVIERNALAQNQLIEDLLDISRIVAGKLRIEAAAVDLAGVIEAAIGTV 495

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  AQ + IE+  +I+P +  +  D   ++QV+ NLL+NAVKFT  GGRV V +    G 
Sbjct: 496 RPAAQARAIEVDTEIEPGVPLLMGDATRLQQVVWNLLANAVKFTPNGGRVRVRLSRR-GT 554

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +++ D+G GIA   +P V   F Q   +   +  G+GLGL I + ++  H G     
Sbjct: 555 AAEVAVSDSGLGIAPHLLPHVFERFRQADSSSTRSHGGLGLGLAIVRQLVELHSGTVSAA 614

Query: 460 SK-LREGVEVIAILP 473
           S    +G      LP
Sbjct: 615 SPGEGQGATFTVRLP 629


>gi|163940905|ref|YP_001645789.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163863102|gb|ABY44161.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 458

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 163 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 223 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|283853366|ref|ZP_06370613.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571234|gb|EFC19247.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 963

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 162/421 (38%), Gaps = 23/421 (5%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWR--IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
             +   +         E              +   +  +    V      P+   +  + 
Sbjct: 266 RTAALARANGRLTAEVEARREAEARQERALALYKAILESTAEAVMCVGVGPQRDVLAVNR 325

Query: 144 TLLIALSIS----ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
             L    +     +L +     A+         A      +      +  + +      F
Sbjct: 326 RFLELWGLPDDWPSLDHIARGQAIRDRLREPEAAEQAFRDLMRDDTRLDTSCLELGDGRF 385

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
               +  + +    I    +  D  +   +  ++ ++  + RAE+ + AK  FLA MSHE
Sbjct: 386 LERRSGPIIQGEAYIGRVLSYID--VTADKEREASTERAKNRAEDASKAKGDFLAVMSHE 443

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN ++G +E    E +    +E    ++  +  S  HLL ++N+ILD S+IEAG+ 
Sbjct: 444 IRTPLNVVIGLTE----EMLARPASEEQLGHLRTVRESAAHLLGVVNDILDFSKIEAGKL 499

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
            L      +  +V          A+ K +    ++   L  ++  D   +RQV LNL+ N
Sbjct: 500 VLERLDFDVRRLVAGVAEAFDREARRKGLRFEARVADGLPGTLCGDPGRLRQVFLNLVGN 559

Query: 379 AVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           AVKFT   G V ++VG              G  + + D G GI    +P +   F QG  
Sbjct: 560 AVKFTEA-GSVSLSVGPAQAAPGAVPDGRIGIEVCVADTGIGIEPDRLPEIFDHFQQGGG 618

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           +I     G GLGL I++ I+   GG+  + S+  EG      +      N  PE   E+T
Sbjct: 619 SIGRRFGGTGLGLAISKGIVERMGGRITVESRPGEGSVFRFTVRLLPPRNAAPEAGEEAT 678

Query: 490 Q 490
           +
Sbjct: 679 E 679


>gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 1215

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 21/370 (5%)

Query: 123 LLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
           L      G   P  + +       TLL  + + A   F       L      +A+     
Sbjct: 405 LAIASSLGEAAPRNVVVLPLVHDNTLLGVVELGAFHGFNERELQLLDSVMEGLAVGISVN 464

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +S   ++  L                 L +SN ++       +    ++       +E  
Sbjct: 465 ISRQRVNELLEQTQQQTE-ELRVQQEELQQSNEELEERAQMLEQQREQIRNKNKEVEEAS 523

Query: 240 KRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +         E  +  KS FLA+MSHELRTPLN+++  S ++     G L+ E    +  
Sbjct: 524 RELQRKADELERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKEGNLS-EKQVGFAR 582

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            ++ +G  LLNLIN+ILDLS++EAGR E     + +ID++     M +  A++K +    
Sbjct: 583 TMNDAGNDLLNLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFRPLAEQKGLAFQI 642

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYIS 404
           K    +   +  D +  +Q++ NLLSNA KFT  GG V V  G  +            I+
Sbjct: 643 KTGAGVPECISTDMQRTQQILKNLLSNAFKFTHNGG-VEVLAGIPAPGENILPVPALAIA 701

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+D+G GI+  +   V  +F QG  +      G GLGL I++ +     G   + S+  E
Sbjct: 702 IRDSGIGISAEKQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQGDITLASREGE 761

Query: 465 GVEVIAILPN 474
           G      LP 
Sbjct: 762 GSVFTVYLPL 771


>gi|121998930|ref|YP_001003717.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590335|gb|ABM62915.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 963

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 30/268 (11%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                  R++AE+   AKS FLA+MSHE+RTP+NA++G S+++    +    NE   +Y+
Sbjct: 375 NRRLKRARQQAEQATRAKSEFLANMSHEIRTPMNAVVGLSQLLLDTEL----NERQLDYL 430

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I RS + LL +IN+ILD SRIE+G+ EL      L +++     +    A+EK IE+ 
Sbjct: 431 KKIQRSSRMLLGIINDILDFSRIESGQLELDTGPFDLGEVIDHLATLFSEAAREKEIELI 490

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISI 405
             I P L  +   D   + QV+ NLLSNA+KFT  GG V + V       ++       +
Sbjct: 491 YAIQPELPRMLVGDSLRITQVLTNLLSNAIKFTPRGGTVELEVREEAGAGSAAANIRFQV 550

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAE---------QGVGLGLPIAQSIMANHGGQF 456
           +D+G G+   ++  V   F Q   +                        + ++   GG  
Sbjct: 551 RDSGIGMDAEQLERVFQPFVQADASTTRRYGGTGLGLGIG---------RRLVERMGGDL 601

Query: 457 LIRSKLREGVEVIAI--LPNTRVLNFIP 482
            + S+  +G        LP   V    P
Sbjct: 602 EVTSQPGQGSTFFFTLQLPIGEVQGSAP 629


>gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
 gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
          Length = 987

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 9/258 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 484 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 539

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++          A +K + 
Sbjct: 540 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAVKKRLT 599

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +  +   D   ++QVI NLL+NA+KFT  GG +     +  G      ++D+
Sbjct: 600 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 657

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + +M    G   + S+   G + 
Sbjct: 658 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 717

Query: 469 IAILPN--TRVLNFIPED 484
           I  +P   +RV+   P D
Sbjct: 718 IIRIPLYNSRVVTLEPRD 735


>gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1263

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 12/328 (3%)

Query: 166  SFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
              FP    L+  A  S   +     AG  +  ++          +    IL     +   
Sbjct: 793  GLFPDDAVLADMAAESYVGITLWDAAGRPSGLIAVIGRHALKDSRLAESILQMVGGRAGS 852

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              E   A       ++ AE  +  KS FLA+MSHE+RTPLN +LG  +++    +     
Sbjct: 853  ELERLYAAEALLLAKETAENASRTKSEFLANMSHEIRTPLNGVLGMLQLMTTTPLDT--- 909

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               KEY+    +S + L  L+++ILDLSRIEAGR  + E   +L  +    + +  + A+
Sbjct: 910  -EQKEYVLAAIQSSKRLTRLLSDILDLSRIEAGRLVIQEGEFTLAPLRTSVLELFFVAAK 968

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR----VHVTVGWTSGR 399
            +K + +   +DP+L   +  DE  +RQ++ NL+ NA+KFT  G      V +        
Sbjct: 969  DKGLSLDFTLDPALPPRLVGDEARLRQILFNLVGNALKFTEKGSVTVAAVPLGATDAVPA 1028

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++ D G GI    +  +   F Q         QG GLGL I + ++   GG   I 
Sbjct: 1029 RVLFTVTDTGIGIPPDRLRDIFEPFVQAEGTYTRRFQGAGLGLSIVKKLVGLMGGSLEID 1088

Query: 460  SKLREGVEVIAILPNTRV--LNFIPEDN 485
            +   +G      LP  R       P + 
Sbjct: 1089 TAPGQGTTCYLSLPFRRTGGAPARPAEA 1116


>gi|206967910|ref|ZP_03228866.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068950|ref|ZP_04202244.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
 gi|229078584|ref|ZP_04211142.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|206736830|gb|EDZ53977.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228704728|gb|EEL57156.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|228714234|gb|EEL66115.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
          Length = 466

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes
           10403S]
          Length = 591

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + D++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 424 LALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|157825438|ref|YP_001493158.1| histidine kinase sensor protein [Rickettsia akari str. Hartford]
 gi|157799396|gb|ABV74650.1| Histidine kinase sensor protein [Rickettsia akari str. Hartford]
          Length = 497

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQFETNRNLKAQIVKVEQTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++   + +++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLALVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V +T+      +
Sbjct: 357 PRADQAEVALMSRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVAITLEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 925

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 123/257 (47%), Gaps = 12/257 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+    A++     R+ A+  N AKS FLA+MSHE+RTPL  +LG  E++   T+   
Sbjct: 425 HDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTTL--- 481

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +    +Y+  I  S   LL LI+++LD+S+IE+G+  L  +A S  ++    +      
Sbjct: 482 -DPRQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAAS 540

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A  K ++I    DP L   V  D   +RQV+ NLLSNA+KFT   GRV + V        
Sbjct: 541 ATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFT-EHGRVVLRVRQVQREAE 599

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GIA  E   +   F Q   A     QG GLGL I+  ++    G+  
Sbjct: 600 SSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGLGLSISDRLVRLMSGELQ 657

Query: 458 IRSKLREGVEVIAILPN 474
           + S+   G      LP 
Sbjct: 658 VVSEPGLGSSFSVRLPL 674


>gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
 gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
          Length = 664

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 5/243 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F A++SHEL+TPL +I GF+E+I        + E  K +   I      +++L
Sbjct: 342 AERMRREFSANVSHELKTPLTSISGFAEIISSGMY--QSEEDLKVFGRRILDESHRMMSL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+ I+ LS++E     +    + +  +VR    +++ +A +KNI +   + P    V+ +
Sbjct: 400 IDTIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQADKKNIVVELDMKP--VHVYGN 457

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + ++ +NLL NAVK+   GG V V +         +++ D G GI   +   +   F
Sbjct: 458 AALLSELAMNLLDNAVKYNHEGGHVTVKLAA-ENGEMVMTVSDTGIGIPVDKQNRIFERF 516

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            +   +      G GLGL I + I+  H G   I S   EG   I  LP     +   E 
Sbjct: 517 YRAEESRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGEGATFIVTLPAMSESDVSVET 576

Query: 485 NHE 487
           +++
Sbjct: 577 DND 579


>gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10]
 gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10]
          Length = 492

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 9/269 (3%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L+  +E   L     V      +  +R +  +  K+ F+A++SHELRTPL AI  ++E +
Sbjct: 223 LALGSEIQALTI---VENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETV 279

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +  L+  T KE++  I     HL NL+NE+LD SR+E    +++   + L D+V  
Sbjct: 280 YNS-LEELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVES 338

Query: 335 CIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VH 390
            +  ++  A   N+ +  + + P     + D   +RQV+LNLL N VK++        V 
Sbjct: 339 AVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLDNGVKYSKKDAPDKYVK 398

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V +      G  I ++DNG GI +     +   F +   ++     G GLGL I + I+ 
Sbjct: 399 VILD-EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVE 457

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            HGG+  + S++ +G      +P  R   
Sbjct: 458 LHGGRIWVESEVGKGSRFFVWIPKDRAGE 486


>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli APEC O1]
 gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RojN [Escherichia coli APEC O1]
          Length = 933

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Plautia stali symbiont]
          Length = 950

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    +     
Sbjct: 453 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTKSLPKGVD----S 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++ +   S  ++V             K + 
Sbjct: 509 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSLVVRKRLT 568

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+  +  ++  D   ++QVI NLL+NA+KFT   G + +   +         ++D 
Sbjct: 569 LYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-YVKEGYLAFRVRDT 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 627 GVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 686

Query: 469 IAILPNTRVLNFIP 482
           +  +P        P
Sbjct: 687 VVRIPIYAGQQPAP 700


>gi|320158971|ref|YP_004191349.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
 gi|319934283|gb|ADV89146.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
          Length = 857

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238
             + +A   AT       I   +F+ N+  +  +     +I + +       A+  S+  
Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE+    ++ FLA MSHE+RTPLN ILG +++++       N+    + +  +  SG
Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
           +HLL ++N+ILD S+IE G++ + +   +  D +     + +   +EK +        P 
Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412
              +  D+  + Q++ NL+SNAVKFT   GR+ V+        +      I + D G GI
Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEQFARSEHSILSIQVSDTGIGI 648

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++ ++   F Q          G GLGL I ++++    G+  ++S+L +G      +
Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708

Query: 473 PNTR 476
           P  +
Sbjct: 709 PVEK 712


>gi|119471294|ref|ZP_01613797.1| putative sensory box histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119445760|gb|EAW27043.1| putative sensory box histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 640

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 13/300 (4%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           LDI L  +  +       +   L  +       +  ++ L +E++      +    +A+ 
Sbjct: 214 LDIGLGSVAQSINVLLKQVQTALSDNESVQKELKKLQNGLESEVQNRTIALERETLKAQR 273

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K+ FLA+MSHE+RTP+N ++G  +++    +    +         I  S   LL++
Sbjct: 274 ASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTDL----DGAQHRLSTIIRESAFSLLSI 329

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           +++ILD S+IEAG+  +     S+ D + E   +L   A+++ +++   I P +   +  
Sbjct: 330 LDDILDFSKIEAGKLNIDPIPFSVSDTLEEVTRVLSSVAKKRELDLELSIAPDIPVNLVG 389

Query: 364 DEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415
           D   +RQV+ NL SNA+KFT+      G V ++V               + DNG G+ + 
Sbjct: 390 DSVRVRQVLYNLCSNAIKFTSTDEKTQGHVRISVEVAHNTADHFTLRFCVTDNGKGMTQT 449

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  + + F Q   +I     G GLGL I +S+     G   + S    G E    LP +
Sbjct: 450 QLRDIFSPFVQAESSITREFGGTGLGLSICKSLTELMLGTIHVNSHAGIGSEFTVELPFS 509


>gi|237803508|ref|ZP_04591093.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025490|gb|EGI05546.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 462

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 12/267 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E + + +   +TR+ AE+ N AKS FLA MSHELRTP+N +LG  +++E   M     + 
Sbjct: 62  EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTRM----TDE 117

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             EY      S +HLL +IN+ILD SRIE    ++   A +L+D++          A ++
Sbjct: 118 QSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLVDLINASTHAFNHSALQR 177

Query: 347 NIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQY 402
            + +  KI P L   +V  D   +RQ+++NL+ NA+KFT   G+V V   W         
Sbjct: 178 KLSLELKIKPGLEALAVIGDPTRIRQILVNLIGNALKFTEQ-GKVCVEADWAMLDEDHLR 236

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +  + D+G GI    + ++  +F Q   +I     G GLGLPIA+++    GG    +S
Sbjct: 237 FTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGAGLGLPIARTLAERMGGTLHAQS 296

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487
           +   G      +P   V    P D  E
Sbjct: 297 EEGSGSVFTLQIPL-PVSRNAPVDIIE 322


>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 933

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGIGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|197303867|ref|ZP_03168902.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC
           29176]
 gi|197297050|gb|EDY31615.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC
           29176]
          Length = 450

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 133/306 (43%), Gaps = 6/306 (1%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           +L   A   + V+ +     +A AL    + T  L +  + +       + +  E+    
Sbjct: 145 SLIRTAWNILPVMLVLSVIGIALALFLANWQTKRLMEPVMHLDLEHPLDNVIYPEMVPLL 204

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D   K  E     +  F A++SHEL+TPL +I G++E++    +   +      +  
Sbjct: 205 EAIDRQNKEKEAVANMRKEFSANVSHELKTPLTSISGYAEIMMNGLVRAEDIPG---FSK 261

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I++  + L+ L+ +I+ LS+++    EL +  + L ++ RE +  L  +  EK I +  
Sbjct: 262 RIYKEARRLITLVEDIIKLSKLDEESVELEKEDVELYELTREIVSRLSPQCSEKKISVAL 321

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             +P         + + ++I N+  NA+K+   GG V V VG T    + IS+ D G GI
Sbjct: 322 SGEP--VFCHGIRQILDEMIYNITENAIKYNRDGGSVSVWVGNTLDGPK-ISVSDTGIGI 378

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     +   F +   +      G GLGL I +     HG +  + S+  +G ++    
Sbjct: 379 PEEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGAILHGAKVTVNSEPGKGTKIEIRF 438

Query: 473 PNTRVL 478
           P    +
Sbjct: 439 PKEEKM 444


>gi|168184843|ref|ZP_02619507.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237793673|ref|YP_002861225.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672106|gb|EDT84067.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229263106|gb|ACQ54139.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 464

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++     +         + +    I+   ++ + LA  +   +   T +   
Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K+ S +   D+     +    ++DE  K+    +  K+ F++S+SHELRTPL +
Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  +       ++ E  K+ +  I    + L  ++ E+LD S+  +G+ +L++  I
Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L+  A    I         L +++ D   ++QV++NLL NA KFT  G
Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +           I +KD G GI + ++P V   F +G+          G+GL I  
Sbjct: 379 GLVELNTKCEEE-YITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I+  H G   I S+  +G  +   LP
Sbjct: 434 EIIKLHNGVLHIESEENKGTTISVKLP 460


>gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
          Length = 613

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++  I    + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 1149

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 3/275 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L ++N ++       D    EL  A+          +  +  KS FLA+MSHELRTPLN+
Sbjct: 439 LEQTNEQLSERTDALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 498

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            L  ++++     G L+ E  K +   I+ +G  LLNLIN+ILD++++EAG+ E+     
Sbjct: 499 SLILAKLLAENGEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 557

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
            +  +V     M Q  A  K +    K++P +   ++ D + + Q++ NLLSNA+KFT  
Sbjct: 558 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTER 617

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V + V + +G G   +++D G GIA  +   +  +F Q          G GLGL I+
Sbjct: 618 -GQVSMNVSFQAGSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 676

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           + +    GGQ  + S   +G     ILP       
Sbjct: 677 RDLAHLLGGQINVDSSPGQGSVFSLILPERYAAEA 711


>gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1191

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY 402
             +    ++D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ V      + +G  
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLSQHTRQGLR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLHWV-STLPTVTPPA 1049


>gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 666

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 133/238 (55%), Gaps = 9/238 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R++AE+ +  KS FLA+MSHE+RTPL AI+GFS++++   +   +     +Y+  IHR+
Sbjct: 287 ERQQAEQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESNL---DESERLQYVNIIHRT 343

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+HL  +IN+ILDLS++EAG  E+    ++L  ++ +  I++  R  +K + +       
Sbjct: 344 GEHLTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNRRGI 403

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEG 415
           +   +  D   +RQ++ N++ NA+KFT  G   +V + +  SG     ++KD G GI+  
Sbjct: 404 VPDMIRTDPLRLRQILTNIIGNAIKFTDQG---YVRMTYEISGSNLLFTVKDTGVGISSA 460

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472
           +   +  +F Q   ++    +G GLGL +++ +    GG   +  S+  +G   I  +
Sbjct: 461 QRSNLFQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKI 518


>gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
 gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
          Length = 387

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L+ Q I    +  I     +     F T     + K+   +          I   +    
Sbjct: 89  LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 148

Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           L+   +K A++ N  K     FLAS++HELRTPL  I G++++I       ++ +  K Y
Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 205

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I     H+  L+ ++ +L+++E   + ++    +L D+++  +  +Q    EKNI I
Sbjct: 206 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 265

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                  L  +  DE+   QVILNLL+NA   + +  ++ V V       Q I +KD G 
Sbjct: 266 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 323

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   +   A  G GLGL I + I+  H G   ++S+L  G     
Sbjct: 324 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 383

Query: 471 IL 472
           +L
Sbjct: 384 LL 385


>gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           LMA3894-4]
          Length = 857

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1194

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   T     + T + Y   I R+G
Sbjct: 814  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDATQRSYTESIRRAG 869

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 870  AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 929

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 930  DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 988

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 989  KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048

Query: 476  RVLN 479
             V +
Sbjct: 1049 WVAS 1052


>gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 571

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S+F+A++SHEL+TPL +I GF+E +        ++ET  +++  I      L  L+ +
Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL L  IE  R  +     ++ + + +  ++L  +A++K +EIF   + +   +  D+  
Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            +Q++LNL+SN+VK+T  GG+V V   + S     + I+DNG GI+  ++P +   F + 
Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNSDMNLILVIEDNGIGISAEDLPRIFERFYRV 522

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A      G GLGL I + I+    G+  + S+L  G +++  +P
Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVIAIP 568


>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
 gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
          Length = 1389

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 154/390 (39%), Gaps = 23/390 (5%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
             +  +  G       LV      P +    +   +    ++   +       + +    
Sbjct: 198 FTLTYLFDGA--AAARLVTSTGIAPGHPAAPQHVLVADPAAVWPAAAAARGETLLVDLAG 255

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNVKILSCQAEKDD 223
             +            L + L    +  + F              ++  V +++  A    
Sbjct: 256 DALPTGAWPRPPNQALVVPLPQQGSAPMGFLVAALNRYRPLDERYRGFVDLVAGHASTRV 315

Query: 224 LIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           L A    A+       +RAEE    + AK+ F +++SHE RTPL  I G  + +     G
Sbjct: 316 LSARGYRAQQ------RRAEELAELDRAKTIFFSNISHEFRTPLTLIAGPVQELRTRLAG 369

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  +E +  IHR+G  L  L+N +LD SR+EAGR +     + L  + RE   + +
Sbjct: 370 A--EPALREEVEVIHRNGLRLGRLVNALLDFSRLEAGRMQARYEPVDLAALTRELASVFR 427

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++  +       P    V+ D     +V+LNLLSNAVKFT   G + V      G  
Sbjct: 428 SAIEKAGLRFDVDCPPLPFPVYVDRGMWEKVVLNLLSNAVKFTFD-GAITVRARAL-GGH 485

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +++ D G GIAE E+P +   F +   A   + +G G+GL + + +++ H G+    S
Sbjct: 486 AVVTVADTGVGIAEAEMPRLFERFHRVENARSRSSEGSGIGLALVKELVSLHAGEITALS 545

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
               G      LP+ R    +P D   + Q
Sbjct: 546 AENLGTTFTIRLPSGRA--HLPADAVTADQ 573


>gi|229134078|ref|ZP_04262898.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
 gi|228649413|gb|EEL05428.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
          Length = 448

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 152/346 (43%), Gaps = 25/346 (7%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           ++ F L     L    ++    ++       + + +  +L   +         +  + ++
Sbjct: 126 MTAFPLIRDDELDNALILYMELSKISEPFQPIRLMITFLLVLMIVNLLLFGKQIIDTIIQ 185

Query: 214 ILSCQAEKDDLIAELEVAK-----------SLSDETRKRAEEE---NLAKSRFLASMSHE 259
            L        + A+ + +             L+D     AE        +  FLA++SHE
Sbjct: 186 PLIQMKRASQVYAQGDFSHRIPIVYDDEIGELADTLNSMAESLGLVEEQRKEFLANVSHE 245

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL+ I G++E+++ ET+   + +T  +Y   I      L  L+ ++LDL+++E   Y
Sbjct: 246 LRTPLSYIRGYTEMLQDETL---DEKTRAQYYDIIENETNRLQRLVTDLLDLAQLERDSY 302

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            +++  +    ++ + +  L+  A+ K + I   +D  L  +  D   + QVI NLL NA
Sbjct: 303 PMTKEPVVYSQVLEDVLYRLEPIARAKGVTIESDLDFDLI-ILGDHDRLEQVIGNLLDNA 361

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +++T  G  +HV     +       I+D G GI + ++  +   F + + +    + G G
Sbjct: 362 LRYTDAGKTIHVKTFAETEYAIT-EIRDEGRGIPKEDLDKLTERFYRVNKSRTRKDGGTG 420

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           LGL IA+ I+  H G     S++ +G  V   LP       +P+D 
Sbjct: 421 LGLAIAKHIIERHEGSLHFSSEVGQGTTVTVGLPL------LPDDE 460


>gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 459

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 146/314 (46%), Gaps = 14/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L + + +   P+ + +    +     + I+    +   LS    I  H+   +       
Sbjct: 157 LIFDMGIILAPLALIIVILTVWIGRKIIIA----ITKPLSQMEQIANHMATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++         ++       E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGRAFNKMAT----SLENEDIKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++++  IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 ----AKGKQEKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLQKQPIVFAQLIEDVVET 324

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            + +  EK +EI  ++DP +  V  DE  M+QV+ N+L NA+++T   G++ V +     
Sbjct: 325 YEWKCIEKQVEISMELDPDII-VMIDEDRMQQVLHNILDNAIRYTNEKGKITVQLQKLKK 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             Q + I D G GI    +  +   F +   A      G GLGL I + I+  H G++ I
Sbjct: 384 DCQ-LKIMDTGIGIEREHVEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHDGKWKI 442

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V+  L
Sbjct: 443 ESEKGKGTTVMIQL 456


>gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
 gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
          Length = 618

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 14/243 (5%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +F++++SHELRTPL ++  + E +               ++       + ++ +IN++L 
Sbjct: 379 QFVSNVSHELRTPLTSLRAYIEALNEGAWKDPTIAPQ--FLQVTQEETERMIRMINDLLS 436

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363
           LSR++ G  ++    ++L D V   +    +  +            I +++      V  
Sbjct: 437 LSRMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELGNQALWVEI 496

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QVI N+++NA+K++  GG + V +   +     +SI D G GI   ++  +   
Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGGVITVRL-VQNQNHVILSISDQGLGIPRKDLGKIFDR 555

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   A   A+ G GLGL IA+ I+  H G+    S    G      LP       + E
Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLP----YESMSE 611

Query: 484 DNH 486
           ++ 
Sbjct: 612 EDD 614


>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1119

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 142/324 (43%), Gaps = 12/324 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEK 221
           + L    +V+A     + S  V+   L                 +  +    +       
Sbjct: 355 IILCLLALVLATVIGILTSRWVVQPILKLKDVATALSEGEFNQKIELNRDDEVGELAKAF 414

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + +  +L+ + +L     K+ E  +  K  FLA+ SHELRTPLN I+G +E +     G 
Sbjct: 415 NSMAFQLQNSFNLLTIKNKQLENLDKLKDEFLANTSHELRTPLNGIIGITESLIDGVAGE 474

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L++E  K  +  +  SG+ L NLIN+ILD  +++    EL    + + ++    I +   
Sbjct: 475 LSSE-VKNNLYLVIFSGKRLSNLINDILDFYKLKHRNIELKLKPVGVREVAEIVINLSSS 533

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
               K ++I   I   +  V ADE  ++Q+  NL+ NAVKFT   G++ V+      +  
Sbjct: 534 MIGTKPLQIINSISYDIPFVDADENRLQQIFYNLVGNAVKFTDS-GKIEVSAKVLENQLE 592

Query: 401 --------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                     I++ D G GI   ++  +  SF Q + +      G GLGL I + ++  H
Sbjct: 593 NSSNNVSLLEITVSDTGIGIPSDKLDQIFESFEQANGSTSREYGGTGLGLAITKKLVELH 652

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
            G   + S++  G +    +P ++
Sbjct: 653 KGSLCVLSEVGVGSQFKFTIPISK 676


>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|42780488|ref|NP_977735.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42736407|gb|AAS40343.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 466

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + VT+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIVTLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
 gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 9/255 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++     +  + 
Sbjct: 452 KMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL----PQGVES 507

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++            +K + 
Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVVKKRLT 567

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +  ++  D   ++QVI NLL+NA+KFT  GG + + V +         ++D 
Sbjct: 568 LWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQV-FVKDGYLAFRVRDT 625

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 626 GVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685

Query: 469 IAILPN--TRVLNFI 481
           +  +P    +V+  +
Sbjct: 686 VVRIPLYNAQVMTPV 700


>gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 5/245 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK  E     K+ F++++SHELRTPL +I G   ++E   +G +      + +     +
Sbjct: 345 ERKAVE---RMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDI-PPQALDMVRIARTN 400

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ LIN+ILDL ++EAG+ EL  S     D+V      ++  A    + +  ++   
Sbjct: 401 TERLIRLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVT-G 459

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD   + QV+ NL+SNAVKF+  G  V V VG         S+ D GPGI++ + 
Sbjct: 460 TPQVKADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQR 519

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q   +   ++ G GLGL I+Q+I+  HG +  + S+   G      L + R 
Sbjct: 520 ARLFGRFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTLESARP 579

Query: 478 LNFIP 482
            +  P
Sbjct: 580 ASVTP 584


>gi|281207530|gb|EFA81713.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1347

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 12/246 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            +D   ++AE  N AK  FL ++SHEL+TP+N I+   E++E   +        +E++  
Sbjct: 593 EADVALRKAEAANEAKVVFLTTISHELKTPINGIMASCEILERSNLDAG----QREFLDA 648

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S  +L +L+ +ILD S++EAG+ EL     SL+ ++ + + M+   AQ K +++   
Sbjct: 649 IRMSSNYLYSLVLDILDYSKMEAGKMELVLDDFSLLKMLEDTLSMVSKNAQPKGLDLVGF 708

Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIK 406
           +D ++   V  D   +RQ++LNL+SNA+KFT   G++ + V        T        ++
Sbjct: 709 VDSNVPVLVHGDATRVRQILLNLISNAIKFTDE-GQIKIRVKLDREITETKEYQLLFEVE 767

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI    I  + T F Q   +     QG GLGL I++ +     G+  + S    G 
Sbjct: 768 DSGIGIKNEHIVLLFTPFSQIDSSNSRKYQGTGLGLSISKRLANMMDGEVFVNSDFGIGS 827

Query: 467 EVIAIL 472
                +
Sbjct: 828 TFSFTI 833


>gi|209694498|ref|YP_002262426.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio
           salmonicida LFI1238]
 gi|208008449|emb|CAQ78615.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio
           salmonicida LFI1238]
          Length = 745

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 17/345 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNV 212
           L      S       L   A++   + +  +   L   LS+   ++        L    +
Sbjct: 277 LEQRFIYSVVLSFFVLIAIAVLVRGLFEHRILLALNALLSYAKSVSKKNGNKHYLGSGIL 336

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +     A+ + +  EL  AK  S + +  AE+  L KS FLA MSHE+RTPLN ILG S 
Sbjct: 337 EFDQIGAKLEGIFIELIEAKEESHKAQAAAEKLTLVKSDFLARMSHEIRTPLNGILGISG 396

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   +        K+ I  IH+ G+HLL ++N+ILD S+IE  +  ++     L D++
Sbjct: 397 LLKQAQLPL----EQKKQIQIIHQGGEHLLAVLNDILDFSQIEQDKLNINFEEFVLDDVL 452

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                +      EKNI      +   + + + D+  + Q++ NLLSN VKFT   G+V +
Sbjct: 453 DTINAIYTPLCMEKNITFNLNNNIDNNVILYTDKVRLTQILFNLLSNGVKFT-EIGQVTL 511

Query: 392 TVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           ++   S  GQ      ++D G GI      +V   F Q          G GLGL I + +
Sbjct: 512 SLNLESKNGQIFLCFDVEDTGVGIDIENQASVFDPFIQVESTGTRKFGGSGLGLAIVKQL 571

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491
           +    G   + S    G      LP   +     +P       +Y
Sbjct: 572 LHLLNGSITVVSSPGLGTSFTIRLPVEVIEYKKELPLAASSHNEY 616


>gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 575

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 151/339 (44%), Gaps = 10/339 (2%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            ++    +LI       +   +      S    + A+      +                
Sbjct: 217 VMFFLLIMLILGIAVYFALSWMVVRPLESLGASLRAVDADPSRAHTAAAPIGVFDSREMD 276

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKS 250
           + F +        +V   + +++  +   +L  A     E R       +R + +N  K+
Sbjct: 277 TLFAHFDSMSSALSVLYGNLESQVGERTDQLRTAMEQLQEQRAHVERVNERLKRDNQYKT 336

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA +SHELRTPL +I+ F+++++     P +    +  + +I ++GQ LL +++ +L+
Sbjct: 337 DFLAIVSHELRTPLTSIIAFADLLDTHV--PRDGGESRRQLDEIEKNGQILLEMVDNVLE 394

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            +RI++GR E+S   I + D+V   +  L   A +K I +   +   +  V +D + +R+
Sbjct: 395 TARIQSGRDEVSIELIDVSDLVGMVVQSLAPLASKKGIALTSDVSSEVPLVMSDWEKLRR 454

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           ++ NL++NA+KFT  GG V V V          I ++D G GI   +   +   F Q ++
Sbjct: 455 ILSNLVNNAIKFTGEGGSVAVAVARDAEEGFVRIEVRDTGIGIPADKHELIFERFTQENM 514

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           +      G GLGL + + +    GG   + S+  EG E 
Sbjct: 515 STARRFGGSGLGLSLVKDLAGILGGDVSLTSRPGEGSEF 553


>gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
 gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
          Length = 857

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|294500028|ref|YP_003563728.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294349965|gb|ADE70294.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 460

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 135/311 (43%), Gaps = 16/311 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +  Q         + L  M+  ++ F    T +L K  VK+     +       +E+   
Sbjct: 155 IQLQFGEMRIFFSVILLVMIILSILFVLISTRYLVKPIVKLTEATKQVAKGKYNVELYVK 214

Query: 234 LSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             DE            K  E+    +  F++++SHE+++PL +I GFS+ +       L+
Sbjct: 215 RRDEIGALASHFSEMAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRS---AHLS 271

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +E   EY+  I    + + +L  ++L L+ ++     + +    +   +++ +       
Sbjct: 272 DEQRNEYLSIIEEESRRMSSLSKQLLTLASLDKESQNIDKIPFDVAAQIKQVL--FMTEW 329

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +  E+  ++D   + +  D+K + QV  NL++N+VKFT  GG + + V        ++
Sbjct: 330 SWREKELAIEMDLPSTMISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRVQM-EDTHCHV 388

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             +D G G+++  +P +   F +   A    E   GLGL I + I+  HGG   + S+  
Sbjct: 389 EFQDTGIGMSKESLPHIFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKG 448

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 449 KGSTFHVYLPK 459


>gi|228964357|ref|ZP_04125474.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795341|gb|EEM42831.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 466

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
           +S+  +G  VI  L
Sbjct: 444 KSEKDKGTTVIIKL 457


>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
 gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
 gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
 gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UTI89]
 gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
 gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           IHE3034]
 gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
 gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
 gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
          Length = 387

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L+ Q I    +  I     +     F T     + K+   +          I   +    
Sbjct: 89  LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 148

Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           L+   +K A++ N  K     FLAS++HELRTPL  I G++++I       ++ +  K Y
Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 205

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I     H+  L+ ++ +L+++E   + ++    +L D+++  +  +Q    EKNI I
Sbjct: 206 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 265

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                  L  +  DE+   QVILNLL+NA   + +  ++ V V       Q I +KD G 
Sbjct: 266 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 323

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   +   A  G GLGL I + I+  H G   ++S+L  G     
Sbjct: 324 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 383

Query: 471 IL 472
           +L
Sbjct: 384 LL 385


>gi|166712857|ref|ZP_02244064.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1191

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V +   +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402
             +     +D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 905  QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAVLPQHTQQGIR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            L +G   +  LP   V + +P     + + +
Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSAVRAR 1053


>gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
 gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
          Length = 863

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 10/257 (3%)

Query: 224 LIAELEVA--KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L  E E    +    +    A+  + AKS FL+ MSHE+RTP+NAI+G + +        
Sbjct: 321 LFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRI--- 377

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  ++ +     + +HLL LIN+ILD+S+IE+ +  LS     L + V     +++ 
Sbjct: 378 SDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEKFDLQETVHSIYNLIEP 437

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A+EK +      +  +   +  D+  + QV +N+++NAVKFT  GG+V + +       
Sbjct: 438 QAKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTPRGGKVTMKLSEKQTSP 497

Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           ++I     I DNG G+ +  +  V   F Q +  I     G GLGL I  +++   GG  
Sbjct: 498 EHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGNI 557

Query: 457 LIRSKLREGVEVIAILP 473
            ++S+  +G      LP
Sbjct: 558 DVQSEEGKGSTFTIDLP 574


>gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
 gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
          Length = 591

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366
           L LSRIE      +   + + +++ +    +   A EKNI++    + ++ SV    D  
Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F +
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEAIIEVTDNGIGIPAKDIDRVFERFYR 541

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I + ++ N GG+  + S+   G      LP  
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|285018412|ref|YP_003376123.1| two-component system sensor protein [Xanthomonas albilineans GPE
            PC73]
 gi|283473630|emb|CBA16133.1| putative two-component system sensor protein [Xanthomonas
            albilineans]
          Length = 1310

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 5/306 (1%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +VA  +  I++     +    +    + +       L +S  ++     E+      L+ 
Sbjct: 840  IVACCSTPIIASDGDVLGSVALYFPFVHYPNAHEQELARSASRLAGIIIERRKTDLRLQQ 899

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                    R  AE  +  K  FLA++SHELRTPLNAILG++ +++ ET   +  +   + 
Sbjct: 900  LLDAEQNARSEAERASRMKDEFLATLSHELRTPLNAILGWARLMQQET--EVLEKDISKG 957

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  I RS      +I+++LD+S I +G+  L  + + L  ++ E I   +  A++K ++I
Sbjct: 958  LQVIERSAHTQAQIIDDLLDMSAILSGKVRLEPTELDLRTLIGETIDSARPSAEDKGVDI 1017

Query: 351  FQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                D + L     D   ++QV+ NL+ NA+KFT   G++ VT+   S     I + D G
Sbjct: 1018 VLVADSTPLPPYLGDTVRLQQVLTNLIGNAIKFTPSTGKITVTLS-NSSTHMRIEVSDTG 1076

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
             GI    +P V   F Q   +   +  G+GLGL IA+ +   H GQ  + S  L  G   
Sbjct: 1077 LGIEPLFLPHVFDRFSQADASSTRSAGGLGLGLSIAKQLTELHHGQLSVISDGLGLGSTF 1136

Query: 469  IAILPN 474
              +LP 
Sbjct: 1137 TLLLPR 1142


>gi|255280413|ref|ZP_05344968.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268878|gb|EET62083.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 442

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 143/308 (46%), Gaps = 12/308 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +      +  L   L  M          + + L KS +  +   A+  D        K +
Sbjct: 141 AGSVWSFLLPLIPVLLFMGMALFLVCLVLAHFLTKSIISPIEDMAQHMDDEEYEIAYKEM 200

Query: 235 ---SDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
               D  +K+     + +  +  F A++SHEL+TPL AI G+SE+IE         E   
Sbjct: 201 KPFLDMIQKQHSDIVKSSQMRQEFTANVSHELKTPLTAISGYSELIESGIA---TKEDTV 257

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            +  +IH+S   LL LIN+IL LS +++    L +  + L ++  +C+ M+Q+ A++ ++
Sbjct: 258 RFSAEIHKSSNRLLMLINDILRLSELDSSEDVLVKETVDLYELAEKCVDMMQVNAEKHHV 317

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +          + A+ + + +V+ NL SNA+++    G V +TVG   G    ++++D 
Sbjct: 318 TLRL--AGGSCFIQANREMIEEVMYNLCSNAIRYNVPDGSVVMTVGM-EGNHAVLTVEDT 374

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E +   +   F +   +   +  G GLGL I +  +A HG +  + SK   G  +
Sbjct: 375 GIGIPEEDQKRIFERFYRVDKSRSKSTGGTGLGLAIVKHAVAKHGAEIGLWSKTGVGTRM 434

Query: 469 IAILPNTR 476
             + P ++
Sbjct: 435 RVVFPESK 442


>gi|153864505|ref|ZP_01997387.1| two-component system sensory histidine kinase [Beggiatoa sp. SS]
 gi|152146000|gb|EDN72613.1| two-component system sensory histidine kinase [Beggiatoa sp. SS]
          Length = 529

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +++AEE  +AKS+F A+MSHE  TP+N I+G+ E++E E          ++ + ++H + 
Sbjct: 18  KQKAEEAKMAKSQFFANMSHEFGTPMNTIVGYPEMLEEEIKECERASLLQD-VKNVHAAA 76

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL LI+ ILD+S+IEAG+ +L      L  +++  +  +Q   + K   +    D +L
Sbjct: 77  KHLLGLIDGILDISKIEAGKMQLYSERFDLKGMIQNTLTTIQPLIENKANTLHLLCDKNL 136

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEG 415
             V+ D   MRQ++ NLLSNA KFT   G + + V       G      I D G G+   
Sbjct: 137 GEVYTDLTKMRQILFNLLSNASKFTER-GIITLEVRRETKKEGDWITFRITDEGIGMTTE 195

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +   F Q   +      G GLGL I +      GG   + S+  +G   I  LP  
Sbjct: 196 QQANLFQVFTQADASTSRKYGGSGLGLAITKYFTQMLGGTINVESEFSKGSHFIVHLPTH 255

Query: 476 RVLNFI 481
            V+  +
Sbjct: 256 LVVKNL 261


>gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 614

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E   +++         ++
Sbjct: 372 EKIDNERKEFVSNVSHELRTPLTSMRSYLEALLDGAW--KDPEIAPQFLKVTQEETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE-----KNIEIFQKIDPS 357
            +I ++LDLSR+++G+  L    +++ ++    I   ++  Q      K+  I +     
Sbjct: 430 RMIKDLLDLSRMDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDFSIKRNFTDR 489

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   M QV+ N+++NA+K++  GG +   +  T+     +SI D G GI + ++
Sbjct: 490 QLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGLVETND-SVVLSISDEGLGIPKRDL 548

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             V   F +   A   +  G GLGL I++ ++  H G+    S   +G      LP
Sbjct: 549 ANVFDRFFRVDKARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTFYISLP 604


>gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 945

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L+  ++   + + +AEE +  KS F+A+MSHE+RTPLNAI+GFS ++  E     
Sbjct: 701 ADIDNLKKIEANLIQAKAKAEESDRLKSAFIANMSHEIRTPLNAIVGFSNLLASEM--DF 758

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E   EY   I  +   LL LIN+ILD+S+IEAG  + +E+ + L    +E   + QL+
Sbjct: 759 SEEDKAEYTRIISVNNDLLLQLINDILDISKIEAGVMDFTENTVELNQFFQEIESVFQLK 818

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+      F        ++  D   + QVI N L+NA+KFT   G +            Y
Sbjct: 819 AKTGIEIKFIPEQAEEYAIKIDRIRLNQVISNFLNNALKFTRQ-GHIFFGYRLREKD-IY 876

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             ++D G GI + +  +V   F +      +  QG GLGL I  +I+    G+  + S+ 
Sbjct: 877 FYVEDTGIGIPKDQQASVFRRFVKL----NNFIQGTGLGLSICSTIIDKFNGKIGVESEP 932

Query: 463 REGVEVIAILPN 474
            +G      +P 
Sbjct: 933 EKGSTFWFTIPR 944


>gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1056

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 12/258 (4%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 339 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL-NER 397

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y G IH+SG+HL++++N+ILDL+R+E G+ EL+ S + + ++    +   +    + 
Sbjct: 398 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTEARAVHTQT 457

Query: 347 N--------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                     E    I+P L  + ADE  +RQ++++LL NA KFT   G+V + V     
Sbjct: 458 GRKGESLPSHEFSLTIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNRW-E 516

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GI + +   +   F Q    +    +G GLGL + +++   HGG    
Sbjct: 517 GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGDVSF 576

Query: 459 RSKLREGVEVIAILPNTR 476
            S+  +G +   +LP + 
Sbjct: 577 LSREGKGSQFTLLLPPSP 594


>gi|171912848|ref|ZP_02928318.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 693

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 5/286 (1%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           +   A     Y +     S V  +     +     E EV      E R  A+  N  K  
Sbjct: 239 IWVHAKGRGVYDSRGNIISVVGTIGDATSRKHRDREREVLLVKEREARAEADRANRIKDE 298

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA++SHELR PLNAILG++ ++  E+  P   +     +  I R+ Q    LI ++LD+
Sbjct: 299 FLATLSHELRNPLNAILGWASILRTESSDP---DELAAGLDVIERNTQLQAKLIADLLDM 355

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           SRI +G+  L     +L+ + RE +  +++ A+EK I +    D     V  D   ++Q+
Sbjct: 356 SRILSGKVHLDLKPTNLLSLAREGVETIRIMAEEKRITVTTPGDAPPVMVSGDSARLQQI 415

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           I NLL+N VKFT  GG + +++         + + D G GI    +P V   F Q   + 
Sbjct: 416 IWNLLTNGVKFTPPGGSLDLSI-ICGQDRAELVVTDTGTGIDPQFLPHVFDRFRQADASS 474

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTR 476
                G+GLGL I + +   H G   + S  + +G      LP  R
Sbjct: 475 TRKYGGLGLGLSIVKHLTEMHHGTVQVFSPGVGKGATFKVTLPLLR 520


>gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 894

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 224 LIAELEVA--KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           L  E E    +    +    A+  + AKS FL+ MSHE+RTP+NAI+G + +        
Sbjct: 353 LFDETEQIAYQKNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRIG-- 410

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +  ++ +     + +HLL LIN+ILD+S+IE+ +  LS     L + V     +++ 
Sbjct: 411 -DKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYENFDLQETVHCIYNLIEP 469

Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A+EK +      +      +  D   + QV +N+++NAVKFT  GG+V + +       
Sbjct: 470 QAKEKGVSFEIITNDIRQECLVGDPLRVNQVFINVIANAVKFTPRGGKVTMRLSEKHTSP 529

Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           ++I     I DNG G+ +  +  V   F Q +  I     G GLGL I  +++   GG  
Sbjct: 530 EHIHLRCVISDNGIGMKKEFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGSI 589

Query: 457 LIRSKLREGVEVIAILP 473
            ++S+  +G      LP
Sbjct: 590 DVQSEEGKGSTFTIDLP 606


>gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UM146]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|266622910|ref|ZP_06115845.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
 gi|288865336|gb|EFC97634.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
          Length = 614

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 13/278 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            +  ++  +L        +    AE  N AK+ FL+ MSHE+RTP+NAILG + +     
Sbjct: 263 TQLREMQRKLTEQTEALKDALAVAEHANQAKTDFLSRMSHEIRTPMNAILGMTTIAAAYI 322

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +    ++ +  I  S +HL+ LIN++LD+S+I  G+  ++     L  +V     +
Sbjct: 323 ---DDQRRVEDCLEKIGYSSKHLMALINDVLDMSKISEGKVRIAHEVFDLETVVESISSI 379

Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +  +A  + +      ID S + +  D   + Q++LNLLSNA+KFT  GG V + +    
Sbjct: 380 IYPQAAARGLTFQVPLIDLSNTVMIGDSLRLNQILLNLLSNALKFTPAGGTVRLEIRQLQ 439

Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            +        ++ D G G+++  +  +   F Q    +     G GLG+PI ++++   G
Sbjct: 440 RKEDRIRLRFTVLDTGIGMSDAFLERLFVPFEQEDNRVAQNSGGTGLGMPITKNLVTLMG 499

Query: 454 GQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHE 487
           G   ++S++ +G      L    P  +    IP+  HE
Sbjct: 500 GTITVKSEVGKGTVFTIELDFDTPLDKD-RVIPQKTHE 536


>gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 1128

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/402 (24%), Positives = 165/402 (41%), Gaps = 33/402 (8%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           +  ++V   A G+   ++ L          LT+ + A+  I + + +             
Sbjct: 317 KHLVIVPVKADGVVNAVIELGFLHPVDDRVLTLLEQASSTIGVGLRSARYRAQLQDSLEE 376

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                                  +  L  +          L ++  ++   QAE +   +
Sbjct: 377 TQ------------RQSEELQVQSEELRVSNEELEEQGRALKETQTRLEQQQAELEQTNS 424

Query: 227 ELEVAKSLSDETR--------------KRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +LE    + +  R              +  E+ +  KS FLA+MSHELRTPLN++L  S+
Sbjct: 425 QLEEQAQMLETQRDDLERTSAAVALKARELEQASQYKSDFLANMSHELRTPLNSLLILSK 484

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++     G L  E  K +   I  SG  LL+LIN+ILDLS+IEAG  E+   ++SL  + 
Sbjct: 485 LLSDNPNGNLTAEQVK-FAQTIESSGNDLLSLINDILDLSKIEAGHIEVRPESVSLQRLT 543

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +   +    A  + ++   ++       V  D + + QV+ NLLSNA KFT  GG V +
Sbjct: 544 GDLRQLFNPVADSRKLDFAIEVAADCPLVVETDRQRLEQVLKNLLSNAFKFTEKGG-VRL 602

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +   S      ++KD G G++  +   +  +F Q    I     G GLGL I++ +   
Sbjct: 603 EIKAASNDRIAFAVKDTGIGVSRDQQEAIFEAFRQADGTISRKYGGTGLGLSISRQLSRL 662

Query: 452 HGGQFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHEST 489
            GG   + S+  EG      +P      RV    P    E+ 
Sbjct: 663 LGGSITLESQPGEGSVFTVTIPVAYDPARVAPREPPRLAETP 704


>gi|218896332|ref|YP_002444743.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218542783|gb|ACK95177.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 466

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli CFT073]
 gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
 gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
 gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
           83972]
 gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 478

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 132/362 (36%), Gaps = 22/362 (6%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIA-------LSISALSNFMLPYAVFLSFFPV 170
           G  W    L +        L          A       ++I          +       V
Sbjct: 121 GEVWATAQLPQGDRPPLRLLVYGVLVKAPTAPLNLETWVAIFVAKPLRPLESTLAELSRV 180

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +  S   +    VL   L       L         +       L      D++ A    
Sbjct: 181 FLFTSIFVLTLGGVLTYLLVARTLEPLEAIAQKAEEVSIKGRTRLPEPETHDEVSALARA 240

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
              + +    R E     +SRFLA  SHELRTP+ AILG    +         NE  +E 
Sbjct: 241 LNRMLE----RLEHAFQTQSRFLADASHELRTPITAILGHVGYLLRR---TPVNEVQRES 293

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I R G+ +  L+ ++L+L+  E G +      + L  +++E         + +    
Sbjct: 294 LETIRREGERMTKLVTDLLELAGSE-GGWRFEVRPVELRGLLQEIASEYAPTFEGE---- 348

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                P    V  D++ + QV  NL++NAVK  A   R+ + V         + + DNGP
Sbjct: 349 IVLEAPDEVWVEGDDERLHQVFANLIANAVKAGAT--RITLRVRR-PPGRVIVQVSDNGP 405

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +P +   F +   A   A  G GLGL I ++I+   GG+  + S++ EG     
Sbjct: 406 GIPPEHLPHLFERFYRVDKARDRAAGGSGLGLAIVKAIVEALGGEVWVESQVGEGTTFSV 465

Query: 471 IL 472
            L
Sbjct: 466 SL 467


>gi|217967622|ref|YP_002353128.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336721|gb|ACK42514.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 350

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL + SHELRTPL +I    ++   + +    +E Y E+   + +  + +  L++ +L+
Sbjct: 122 EFLGNASHELRTPLTSIQILIDLFSEKKIT--LDEIYNEFFPHLRKEVERMSKLVSNLLN 179

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LSR+EAG  +L    ++L +IV E I  L     +KN+E+  KI   L  + AD + +  
Sbjct: 180 LSRLEAGVIDLQLKEVNLTEIVMEVIDRLTPHISKKNLEVNLKIPEKLV-INADPQHLDT 238

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ N++ NAVK+T  GG + + V         + I+D G GI E ++  +   F + S +
Sbjct: 239 IVFNIVENAVKYTPQGGLIEIGVNENEDN-VILWIRDTGIGIPEKDLNRIFDRFYRVSKS 297

Query: 431 IKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             + +    GLGL I + ++  HG    + SK+ +G +   I+P  +
Sbjct: 298 RTNEDGFSTGLGLSIVKKLIERHGWTIRVESKVNKGTKFEIIIPKRK 344


>gi|311746257|ref|ZP_07720042.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
 gi|126576490|gb|EAZ80768.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
          Length = 845

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 9/305 (2%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
             A  LA  + FF  +          IL     K+  +        L  +  ++AE+   
Sbjct: 292 VAAYGLANDVIFFLVLVVAFAVLGSAILVYSILKEIRLNRSYQENLLLSQ--QKAEQLAK 349

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           +K  FLA+MSHE+R PL+ I G+  V+E   +        + Y+  I  + Q L+ ++++
Sbjct: 350 SKQEFLANMSHEIRNPLHVIQGYQSVLEKSHLDT----AQQSYLRMIGFASQTLMEIVDD 405

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEK 366
           +LD S++EAG+ +L  +    +++        +L+A EKN+     +D P    +  D+ 
Sbjct: 406 VLDFSKLEAGKLKLEFTPFDPVNLFGSLQNFFELQADEKNLGFHWSVDLPEDKWLLGDQL 465

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q++ NLLSNA KFT   G ++V V W       + IKD G G++E  +  V   F Q
Sbjct: 466 RLKQILNNLLSNAFKFTEE-GSINVGVKWVE-GILTVEIKDTGIGMSEEVLEKVFLEFDQ 523

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              +I     G GLGL I   ++    G+    SK+  G  +   LP       I +  +
Sbjct: 524 ADNSISRKFGGTGLGLAIVHRLVHLMHGEINTSSKVGVGTCISISLPMETTKVQISDSIN 583

Query: 487 ESTQY 491
           E   +
Sbjct: 584 EEFNF 588


>gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 761

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 15/300 (5%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK--RAEEENLAKSRFLA 254
           L    + +  L +    +    AE+       + A S  +  +   +A+E N  K  FLA
Sbjct: 340 LGTIVFASTQLGRYYTTVDLAMAEQLA-----QRAASAIENAQLYWQAQEANRIKDEFLA 394

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +SHELRTPLN++LG+ ++I    +   +     + +  I R+ +    LI++ILD+SRI
Sbjct: 395 IVSHELRTPLNSMLGWVQIIRHRKL---DEAITSKALETIERNAKLQSKLIDDILDISRI 451

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
             G+  L+   + L+ ++   I  +   ++ K+I++   +D S+  +  D + ++QV+ N
Sbjct: 452 VQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVGEIMGDAERLQQVVWN 511

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT  GGRV V +   +   Q IS+ D G GI+   +P +   F Q        
Sbjct: 512 LLSNAVKFTPSGGRVEVCLKQVNSNAQ-ISVSDTGKGISGEFLPYIFERFRQADSTTTRV 570

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           + G+GLGL I + ++  H G     S+    G     +LP    +    E   + +Q K 
Sbjct: 571 DGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLPL---IEPQSEQLIKESQVKV 627


>gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.]
          Length = 1019

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 150/386 (38%), Gaps = 29/386 (7%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
            ++ +     +T         A   IA+SI A   ++    +         AL  Q   +
Sbjct: 194 GVIEVGSFQEFTDMQKDFLDEAGKGIAISIYACEAYIRTRLLLEETQVQAGALRVQQEEL 253

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              +         L  +          L + N ++       +     +       +E +
Sbjct: 254 RQTNQELEEQTLALGESEEKLKNQKNDLQQINTELEETAMLLEKQKENIRKKNVELEEAK 313

Query: 240 K-------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +         E  +  KS FL +MSHELRTPLN+IL  S ++     G L+ +   E+  
Sbjct: 314 RLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNLDQKNI-EFAQ 372

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I+ +G  LL LINE LDL+++EAG+ E S   + + D+           A+EK +    
Sbjct: 373 TINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEKGLIFTI 432

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------------GWTSGR 399
                + S   +D + + Q+I NLLSNA KFT   G + + V            G  +  
Sbjct: 433 NQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEK-GTISLDVFRPDNTVDLTLYGLVNKN 491

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D G GI E +  ++  +F Q          G GLGL I++ +    GG+  + 
Sbjct: 492 TIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGGEITLE 551

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           +   +G      +P        PE  
Sbjct: 552 TTEGKGTVFTLYIP-----EIPPEQE 572


>gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
 gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
          Length = 1111

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 154/380 (40%), Gaps = 10/380 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
             G+ W L+  V           +     A +LIA+ +  +++  L    F++   + + 
Sbjct: 313 LKGIDWALVVEVPESVAFARVHQLEKLFVAAMLIAIVLVVMASHYLSN--FITSPLLKLT 370

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            + + + +  +    +       +         + +S  + +    +++    ELE    
Sbjct: 371 WAAEKVSAGDMDADMINMERKDEIGRLAVSFERMQRSIREKIQLIKQQN---EELESNLQ 427

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           L  +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+  + +K  +  
Sbjct: 428 LIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITAD-HKYQLDI 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQ L  L++++LD  ++  G  ++  SA+ L       + +       K + I  +
Sbjct: 487 IISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTHLVLELSSHLLGNKPLRIINQ 546

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +      V AD + + QV+ NL+ NA+K+T   G++ ++          + + D G GI 
Sbjct: 547 VPEEPVWVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISATVV-DNNIRVQVVDTGQGIP 604

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP
Sbjct: 605 ADQLDHIFEPLIQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLP 664

Query: 474 NTRVLNFIPEDNHESTQYKC 493
                        +S  ++ 
Sbjct: 665 IATEEQIASASQFDSPHFQA 684


>gi|332141752|ref|YP_004427490.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551774|gb|AEA98492.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 699

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + AKS FL+SMSHELRTP+N + G  E+         N E    Y+     +G+ LL L
Sbjct: 204 ASKAKSEFLSSMSHELRTPMNGLFGMIELAID------NPEKSSIYLKKAKTAGRQLLVL 257

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363
           IN+ILD+S+IEAG+ ++  + + L+ I+ + + + ++  Q K +E     DP L  V   
Sbjct: 258 INDILDVSKIEAGKIKIERAPVDLLQILDDVVSLQRVYCQRKGLEFIYLKDPDLPHVVEG 317

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTV 420
           D   + Q++ NLL+NA+KFT   G V + V +T    G      + D G GIA  ++  +
Sbjct: 318 DITRISQILHNLLNNAIKFTER-GSVTLKVRYTKHPNGNFLSFDVIDTGIGIASSKLDNI 376

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q          G GLGL IA+ +     G   + S + +G      
Sbjct: 377 FRKFEQADKTTTRDFGGTGLGLSIAKQLAQLMNGDITVTSFIGQGSTFSFT 427


>gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 474

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 9/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + ++++      R +A E +  KS FLA+MSHE+RTPLNAI+GF+ ++  E + P + 
Sbjct: 212 IHDHKISEDGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDI-PFSE 270

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY   I  +G  LL LI++ILDLS+IE+   E      SL  ++ +     Q    
Sbjct: 271 AEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQA-QRLCM 329

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            + + +   +  + + +  D   ++QV+ NL++NA KFT   G +        G     +
Sbjct: 330 PEGVRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFT-DDGSITFGFRSPQGCEQVEL 388

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA+  +  +   F +      S  +GVGLGL I ++I    GG   + S+  
Sbjct: 389 FVHDTGKGIAQEHLDRIFERFYKAD----SFVKGVGLGLSICRTITEYLGGAISVESESG 444

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489
           +G       P +R     P      T
Sbjct: 445 KGTRFTIQHPLSR-PEAAPRREPAGT 469


>gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 973

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 3/247 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSG 298
           R  E    KS F++++SHELRTPL +I G  +++     +      +  ++ +     + 
Sbjct: 486 REREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVSLSNT 545

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L+ LIN+ILD+++IE GR EL    +S+ D+ R  +  +   A  + + I   + P L
Sbjct: 546 ERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDLQPGL 605

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            SV AD     Q+++NLLSNA+KF+     V ++   T G   Y S++D G GI      
Sbjct: 606 PSVLADRDRSTQILINLLSNAIKFSVGSQSVLLSA-RTDGSMVYFSVRDWGRGIDLENQE 664

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q   +      G GLGL I+++++   GG+  + S+L  G      LP    L
Sbjct: 665 RIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTFTLPVAPGL 724

Query: 479 NFIPEDN 485
               E +
Sbjct: 725 PTRTEPS 731


>gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 641

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 7/350 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185
            EP    PE      SA L   +  + +       A       + + A     I++ +  
Sbjct: 138 FEPSPIGPEGPPCALSAHLGRQVICTDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 197

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 198 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 257

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K  FLA++SHELRTPLNAILG+S +++ +   P         +  I RS +    +I
Sbjct: 258 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 314

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 315 DDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCDGELWFFGD 374

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT  GG V V +         + ++D G GIA   +P V   F
Sbjct: 375 AGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAAEFLPHVFDRF 433

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q          G+GLGL I++ ++  HGG     S     G     +LP
Sbjct: 434 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 483


>gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 597

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++   A+  F+A++SHEL+TP+ ++ GF+E +    +   ++E   +++  I      
Sbjct: 353 ELKKLEKARKDFVANVSHELKTPVTSLKGFTETLLEGAV--NDDELRMKFLRIIANESDR 410

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI E+L+LSRIE   + L+   + +  ++ E   ML  +A  K + I +KI  S   
Sbjct: 411 LETLIFELLELSRIEGEAFSLNWQTVDIEPLIDEVFDMLGEKASAKQMTIEKKISGS-PI 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  +   ++Q+++NL++NA+ +T  GG + V V   + +   + ++D G G+++ EIP +
Sbjct: 470 LAGEGARIKQILINLINNAIVYTHEGGTITVRVKEQAEQ-VVLEVEDTGIGLSKKEIPRI 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + +   H  +  + S+  +G       
Sbjct: 529 FERFYRVDRARSRNSGGTGLGLAIVKHLAEAHRAKLSVDSEPGKGTTFRIAF 580


>gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1413

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+  +    E R  AE+   A+SRFLA+MSHELRTP++ + G  E++++  +    N
Sbjct: 791  ITALKQQEYELREARAYAEQAMQARSRFLATMSHELRTPISGMHGMLELLQMSEL----N 846

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  +  + ++  S  +LL L+N+ILD S+IEAG+ +L+  +  L  ++ + I      A 
Sbjct: 847  DDQRFMVRNVVTSTNNLLYLVNDILDFSKIEAGQLQLNYQSSRLQTVICDAIRGHAALAH 906

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             K + +  + +  +      D   + QVI NLL+NAVKFT  GG + + V + S +   I
Sbjct: 907  NKGLNVVLEWEHHVPDWADIDGVRIGQVISNLLNNAVKFTEQGG-ITIRVSYLSEQ-LTI 964

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            S+ D G GIAE +   + T F Q    I     G GLGL I + ++   GG   + SK  
Sbjct: 965  SVSDTGIGIAEEKQALLFTPFEQVESDINRRFGGTGLGLAICEQLVCKMGGALTLTSKAG 1024

Query: 464  EGVEVIAILPN 474
            EG      +P 
Sbjct: 1025 EGSCFRFTVPL 1035


>gi|238898708|ref|YP_002924389.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466467|gb|ACQ68241.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 874

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 11/308 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEKDDLIAE 227
           PV+  ++    +    L      ++      F +    LF   +KI+    ++    +A+
Sbjct: 155 PVLGYIAIDLDLQATRLQQRKECLILGVFLSFAFCMATLFIYRLKIIGQATSDLRKTLAK 214

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+     + T+K+ +E++  KS FLA++SHELRTPLN+++GF+     +T+      T 
Sbjct: 215 MEIQHIELEMTKKKVQEDSHMKSEFLANISHELRTPLNSVIGFA----RQTLKTSLTPTQ 270

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +YI  + +S  +LL++IN++LD S++ A +  L      L   V E +I+L   A EK 
Sbjct: 271 TDYIKTMKQSAHNLLSIINDVLDFSKLNAKKLILDHIPFQLRKNVDEVMILLAHSAHEKG 330

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----Y 402
           +E+  KI   +   V  D    +Q+I NLL NA+KFT   G + V V   + +       
Sbjct: 331 LELILKIHHDVPDWVMGDPMRFQQIITNLLGNAIKFTEK-GHIIVQVALIAKKEASIHLL 389

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + I+D G GIA  +   +  +F Q   +I     G GLGL I + ++    G+    S++
Sbjct: 390 VEIQDTGKGIAPEQQAELFQAFIQTDASISRCHGGTGLGLAITRKLVQAMQGEINFDSQV 449

Query: 463 REGVEVIA 470
            +G     
Sbjct: 450 NQGSTFRF 457


>gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
 gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
          Length = 857

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP   V    P+   +
Sbjct: 695 GTRFEIQLPIELV--EKPDAQQQ 715


>gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE      +  F+A++SHE+RTPL+ + G+SE I        + E   E +  IH 
Sbjct: 231 RDVTEEFKLEKLRRDFVANVSHEIRTPLSMLQGYSEAILDGF--ADSPEERDELVQVIHD 288

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+ ++LDL+R+EAG  EL      + ++V+         A+E++I +  ++  
Sbjct: 289 ESVRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPE 348

Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT-------VGWTSGRGQYISIKDN 408
               +  ADE  + QV+ NLL NA++ T  G  + V+       +G +      + IKD 
Sbjct: 349 QHLFMESADEDRLEQVLTNLLDNALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDE 408

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           G GI   ++P +   F +   + K  +  G GLGL I ++I+ +H G   + S + +G  
Sbjct: 409 GEGIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTT 468

Query: 468 VIAILPN 474
              +LP 
Sbjct: 469 FTLLLPV 475


>gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 528

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 6/252 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   + A     +  +  +  +  K  FLA++SHELRTPL AILG+ ++++ E     
Sbjct: 127 RDITGQKDAARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEA---- 182

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 + +  I R+ +    LI ++LD+SRIEAG+  L    + L  +V   +  ++  
Sbjct: 183 TPADLAQGLEVIERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPT 242

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  K+I +   +         D+  ++Q++ NLL+NA+KFT   GR+ VT+       + 
Sbjct: 243 ADAKDIRLTSLLADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEV 302

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461
           I + DNG GIA   +  V   F Q   +      G+G+GL IA+ +   HGG   + S  
Sbjct: 303 I-VSDNGQGIAPEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLG 361

Query: 462 LREGVEVIAILP 473
           L +G      LP
Sbjct: 362 LGKGASFTLSLP 373


>gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 15/361 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--------A 178
           +E          +       I   +      ML     +     +V              
Sbjct: 541 LEAQAQAAVARILPGRTAAWIGAPLGRYLAVMLTLCAVIGLILGIVHAGATIAHPENREF 600

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237
           + +          ++   +++   +     +      +   A     IA  +V  +   E
Sbjct: 601 LRTALTSVFFTLVVILGVVAWLFVLAQESRRVAQAETMRQTALYQAEIAAHKVTDAKLQE 660

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++RAE  N AKSR++  +SHELRTPL+ +LG+++++E     P         +  I RS
Sbjct: 661 AKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLES---DPAIPAHRVNGLRVIRRS 717

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHL  LI+ +LD+SR+EAGR ++    + L D + + + M++L+A+E  +E        
Sbjct: 718 AQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDMVRLQAREAGLEFRFSRPEI 777

Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L +V A DEK +RQV+LNLLSNA+KFT   G V + + +   +    +I+D GPGI E +
Sbjct: 778 LPAVVATDEKRLRQVLLNLLSNAIKFTEA-GTVSLDLSYR-SQIAVFTIRDTGPGIPEAD 835

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +GS     +  G GLGL IA  +    GG+  + +    G +    L    
Sbjct: 836 LARIFEPFERGSTPAARSTPGTGLGLTIANLLAQLLGGEITVTAAPGGGTQARLRLMLAS 895

Query: 477 V 477
           V
Sbjct: 896 V 896


>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 2457T]
 gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 2457T]
 gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
           [Shigella flexneri 2002017]
 gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
 gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1415

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 134/351 (38%), Gaps = 11/351 (3%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
               P        A       ++       P  V        VA  T          + L
Sbjct: 234 DASHPAVKPTLALAGGDEPWPVAEAFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVL 293

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEE- 245
               +        +   L    +   + Q     +  ++  A + +D   E R+RAE   
Sbjct: 294 PIPASGDTGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRAEALA 353

Query: 246 --NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + AK+ F +++SHE RTPL  +L   E            +  +  +G  HR+G  LL 
Sbjct: 354 EIDRAKTAFFSNVSHEFRTPLTLMLSPLE---EALGRDGIADEQRTLLGIAHRNGLRLLK 410

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N +LD +RIEAGR     + + L     E     +       +    +  P    V+ 
Sbjct: 411 LVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAGLRFVIEAPPLPQPVYV 470

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422
           D     +++LNLLSNA KFT   G + V VG         I + D G GI E EIP +  
Sbjct: 471 DRDMWEKIVLNLLSNAFKFTFE-GEIVVRVGPDPDGRHAVIEVSDTGTGIPEAEIPHLFE 529

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   + +G G+GL + Q ++  H G   + S++  G      LP
Sbjct: 530 RFRRVEGARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVTLP 580



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 112/327 (34%), Gaps = 30/327 (9%)

Query: 165  LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
            +   P   +      M    + +  AG                   ++++   Q  +  +
Sbjct: 965  VWATPWFGSTPGLPEMIRSDIAVVAAGETVRRELHVNLPAGGWRWFDLQMRPVQDPQGQV 1024

Query: 225  IAELEVAKSLSDETRKRAEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELET 278
            IA +  A  +++  R++AEE         A  +    ++H+    L  I   ++++    
Sbjct: 1025 IAIVPEAVDITE--RRKAEEAFRQAQKMEAIGQLTGGVAHDFNNMLTVIRSSADLLRRRE 1082

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            + P   E  + Y+  I  +      L  ++L  +R    R+  +       + + +   M
Sbjct: 1083 LPP---ERVRRYVDAISDTADRAAKLTGQLLTFAR----RHAQNREVFDAAEHIEDVSDM 1135

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397
            L+  A          I      V AD       ++NL++NA       G + V+V  ++ 
Sbjct: 1136 LKT-ALGSRAVFNLDIAERPLPVEADTNQFDAALVNLVANARDAMDGHGTLTVSVTRSAP 1194

Query: 398  ---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                          +SI D G GI   +I  +   F       K   +G GLGL      
Sbjct: 1195 TPQEAAAGSRGFVEVSIADTGCGIPREQIERIFEPFF----TTKDIGRGTGLGLSQVYGF 1250

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNT 475
            +   GG   + S +  G  +   LP +
Sbjct: 1251 VQQSGGTINVDSAIGCGTTITLRLPLS 1277


>gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
 gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
          Length = 857

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721


>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1199

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 149/331 (45%), Gaps = 46/331 (13%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAK---------- 249
                 S ++ L     +  +  +     E A+    E RK+AE                
Sbjct: 641 PRVWHSSEIESLRQLCVQLAIAIQQSTLFEQAQIEISE-RKQAELALQQAKEAAEAANRA 699

Query: 250 -SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            S FLA+MSHELRTPLN ILG++++++   M        ++ +  I   G HLL LI++I
Sbjct: 700 KSEFLANMSHELRTPLNGILGYTQILK---MHDNLTSQQQDNLQTIQDCGGHLLTLIDDI 756

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LDLS+IEA + EL  + +   + ++    + Q+RA +KNI    +    L   ++ADEK 
Sbjct: 757 LDLSKIEAEKMELYPTELDFRNFIKSISDLFQMRASQKNIAFTCEELSQLPRSIYADEKR 816

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----------------------QYIS 404
           +RQV++NLL NAVKFT  GG V   VG   G                             
Sbjct: 817 LRQVLINLLGNAVKFTNSGG-VTFKVGCLEGGEWGLGTIGNNEQRTTNNYQLPIIKLRFQ 875

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   ++  +   F Q S     + +G GLGL I+Q ++   GG+  ++S L +
Sbjct: 876 VEDTGIGIEASKLEEIFLPFHQVSD-RAYSTEGTGLGLSISQKLVKMMGGEIGVKSALNK 934

Query: 465 GVEVIAILPNTRVLNFIP-EDNHESTQYKCY 494
           G      L    V N  P  +  E  Q   +
Sbjct: 935 GSIFWVDLELPLVENSYPLVETKEVPQIVGF 965


>gi|257454753|ref|ZP_05620007.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
 gi|257447873|gb|EEV22862.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
          Length = 1101

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 17/288 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +     +        + +      E+E+        R  A   +  KS FLA++SHE
Sbjct: 295 LRRLHKSFQELKNHAEQTEDDLRLAFDEMEMQNISIRNARDAAVSASQTKSAFLANISHE 354

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+I GF  ++         N     Y+  I +S  HLL L+N++LD S+IEAG+ 
Sbjct: 355 LRTPLNSIDGFINLLSRHGG---LNAEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKL 411

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L      L   + + + ML   A EK++ +       +   +  D    +QV+ NL++N
Sbjct: 412 VLDSHEFDLYASIYDVVDMLSPLAAEKDLRLAVFFYDDVPHYLVGDALRTKQVLTNLVNN 471

Query: 379 AVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A+KFT  G  +  V++        +IS++D G GI+      +  SF QG  +I     G
Sbjct: 472 AIKFTDDGEVIVRVSLDDDIDDLIHISVQDTGRGISPEHQKVLFQSFSQGDPSITRQYGG 531

Query: 438 VGLGLPIAQSIMANHGGQFLI------------RSKLREGVEVIAILP 473
            GLGL I++ +    GG                +S   +G      LP
Sbjct: 532 TGLGLVISKQLTYLMGGNIGFYDNATEQAGDASQSHKIKGTTFWFTLP 579


>gi|157803446|ref|YP_001491995.1| histidine kinase sensor protein [Rickettsia canadensis str. McKiel]
 gi|157784709|gb|ABV73210.1| Histidine kinase sensor protein [Rickettsia canadensis str. McKiel]
          Length = 497

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E  + + ++F A++SHELRTPLN+I+GFSE++  E   
Sbjct: 241 ARQIIEEQLETNRNLKAQIVKLERTSSSNTKFFANISHELRTPLNSIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++   + +++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLALVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  K+      + AD K ++QV+LNLLSNAVKFT  GG V + +      +
Sbjct: 357 SRADQAEVALISKLPKEHVVIKADPKRLKQVLLNLLSNAVKFTNSGGSVTIALKKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L+ FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSVFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ +G  V    
Sbjct: 477 SKINKGTTVTITF 489


>gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 622

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  + +        D   + Q+I NL++NA+K T   G + +             
Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYAIQPDDQLRFY 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 611 GSEFSFILP 619


>gi|124515967|gb|EAY57476.1| putative multi-sensor hybrid histidine kinase [Leptospirillum
           rubarum]
          Length = 851

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 160/402 (39%), Gaps = 22/402 (5%)

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-PGTWTPEYLT 138
           + V          + +              +L       L    + L          +  
Sbjct: 35  VIVGMIASFYLYTLHHVPGVSAIPVSAHSMILPVIAYTTLLLATIYLFPGYHPVRILFGI 94

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
               + +++ ++++ +    L                           + +A  ++    
Sbjct: 95  AGDLSLVMLVMALTGVKGLPLGVVDLWVI--------MGNGFRFGPRYLGIATGISAVEF 146

Query: 199 FFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              Y     ++ +  +   Q      L   + V  +  ++  + A   N +KSRFLA+MS
Sbjct: 147 IGVYRVNPWWQQHTVLFDTQLIGMIVLPLYMAVLLTKLEKLIEAANAANQSKSRFLANMS 206

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN I+G SE++  +      +    E +  +  S +HL ++I++ILD SR+EAG
Sbjct: 207 HELRTPLNGIMGLSELLREQ-----ASPRQNELLNTLQGSARHLSDIISKILDFSRLEAG 261

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           R  +S     +  +V E +  L   A++KN+ +   +D    S +  D   ++Q++ NLL
Sbjct: 262 RMTVSLVTFDVGQVVAETVSALLPLARQKNLPVTVLMDARFPSSLRGDPFHLKQILTNLL 321

Query: 377 SNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            NA+KFT   G V +TV       T        + D G GIAE E   +  SF QG  ++
Sbjct: 322 GNAIKFT-ESGEVALTVTPVLTSDTRELSVRFEVSDTGIGIAEEEKSRIFESFSQGDDSV 380

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                G GLGL I + ++    G+    S   +G      +P
Sbjct: 381 TKRYGGAGLGLAITRQLVDLEKGKLGFLSHSGKGSIFWCTIP 422


>gi|75759998|ref|ZP_00740065.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899979|ref|ZP_04064217.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
 gi|74492517|gb|EAO55666.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228859665|gb|EEN04087.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
          Length = 466

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
           +S+  +G  VI  L
Sbjct: 444 KSEKDKGTTVIIKL 457


>gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 877

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 137/266 (51%), Gaps = 7/266 (2%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +AEK       E++ + +D TR         K  FLA MSHELRTPL A+L  +E +  E
Sbjct: 498 EAEKALWKRTEELSAASADLTRTA-----RMKDEFLAHMSHELRTPLGAMLNLAEALAEE 552

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++G L NE  +  +  I   G+H L+LI +ILDLS++EAGR +L  S + +  + R  + 
Sbjct: 553 SLGTL-NEAQRRILQSIEECGRHFLSLIGDILDLSKVEAGRLDLVRSPLDVASLARGALT 611

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            L    ++K I +  +    L     D K +RQ+++NLLSNAVKFT  GGRV V V    
Sbjct: 612 ALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLLSNAVKFTPQGGRVGVEVLRDP 671

Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            R    +++ D G GI+  ++  +   F QG   +  +  G GLGL +   ++  HGG  
Sbjct: 672 LRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSRSFSGTGLGLSLVLRMVELHGGGL 731

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIP 482
            + S   EG      LP    ++  P
Sbjct: 732 QVESAPGEGSRFTVRLPLAEEVSEEP 757


>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|225849089|ref|YP_002729253.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644480|gb|ACN99530.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 332

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  F++++SHEL+TP++ +    E IE E     +    K+++    +  + + +LIN
Sbjct: 110 QAKKDFVSNVSHELKTPISVLKSAVETIEEEK----DPVMIKKFVNIAKKRIEQMDHLIN 165

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R+E+   ++ +    L   + E    L+   +EK I++     P+   V+ADE+
Sbjct: 166 DLLILARLESQEDQVKKERYDLHKQIEEIFEDLKHLTEEKEIQL-INQVPNKFDVYADEQ 224

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +   + NL+ NA+K+    G+V V       +   I+++D G GI E  IP +   F +
Sbjct: 225 KLSIALKNLIENAIKYNKQNGKVIVKA-VKDSKYTTITVEDTGIGIPEESIPLIFERFYR 283

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +      G GLGL I + I   H G+  + SKL EG +    +P
Sbjct: 284 VDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESKLGEGSKFFIKIP 330


>gi|295402180|ref|ZP_06812138.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975771|gb|EFG51391.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 442

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 3/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A+ SHELRTPL+      EVIE +    L   + + +  D+    + +  L
Sbjct: 213 AFQRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVF-DDMKDELRRMTKL 271

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L L+R +A   EL++    L  ++ E I   +  A++K+I+    I   ++ ++ D
Sbjct: 272 INDLLWLARSDANAIELTKEWFLLPPVIDELIRKCRPLAEQKHIKFVTNIQKDMA-IYGD 330

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           ++ + Q+I  LL NAVK+    G++ + V         I I D G GI   +   +   F
Sbjct: 331 KERIIQLIFILLDNAVKYNTENGQIKIAVERDRKN-VNIEISDTGIGIPVEQQALIFERF 389

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +    +QG G+GL IA+ I+  HGG   ++S+  +G   I  LP
Sbjct: 390 YRADPSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|238650409|ref|YP_002916261.1| sensory transduction protein kinase [Rickettsia peacockii str.
           Rustic]
 gi|238624507|gb|ACR47213.1| sensory transduction protein kinase [Rickettsia peacockii str.
           Rustic]
          Length = 497

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++R  +I+++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 480

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE      +S F+A++SHE+RTPL+ + G+SE +     G  + E  +E +  IH 
Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG--SPEESEELVQVIHD 289

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+ ++LDL+R+EAG  ++    + + +++        +R++E+ + +      
Sbjct: 290 ESLRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQG 349

Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGI 412
               +  ADE  + QV+ NLL NA + T  G +V +              I IKD G GI
Sbjct: 350 QRLLLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGI 409

Query: 413 AEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           A  ++P +   F +   A    E +G GLGL I ++I+  HGG     S L EG E   +
Sbjct: 410 ASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAASVLGEGTEFTIL 469

Query: 472 LPNT 475
           LP +
Sbjct: 470 LPIS 473


>gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708]
 gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708]
          Length = 613

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 153/305 (50%), Gaps = 10/305 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                +   L    ++  +    +   I   +          +  E  N  K++FLA+ S
Sbjct: 181 PLQIQLRSQLITKTIQHFNTALAQLRQIQFWQQRCQQLANFNQELERTNQLKNQFLANTS 240

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL++I+GF+ ++  +   P   + ++EY+  I  SG+HLL+LIN+ILDLS+IEA 
Sbjct: 241 HEIRTPLSSIIGFTHLLLAQGYEPE-RQRHQEYLHIIQSSGKHLLDLINDILDLSKIEAN 299

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           + E+    + +  + R  + +++ +A  K +++  +I+  ++++  D   ++Q++LNLL 
Sbjct: 300 QLEVQWEIVEVSTLCRNVLALVKEKAANKGLKLRLEIENDVTNLVVDPLRLKQMLLNLLF 359

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKFT + G V + V          S+ D G GI++     +   + Q       + +G
Sbjct: 360 NAVKFTNL-GSVGLRVSI-KDLYLRFSVWDTGIGISQENQTRLFRPYSQIINPGAGSNEG 417

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP------NTRVLNFIPEDNHE-STQ 490
            GLGL + Q +   HGG   + S + +G     +LP       +  ++   E++ E S +
Sbjct: 418 SGLGLVVTQQLAEIHGGYLELESAIDQGSCFTIVLPLKPQGRASEAIDIKAEEDSEISQE 477

Query: 491 YKCYA 495
            K Y+
Sbjct: 478 VKKYS 482


>gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32]
 gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32]
          Length = 537

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 133/270 (49%), Gaps = 10/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + N ++       + ++             ++ A   N AKS FLA+MSHE+RTPLN I
Sbjct: 4   IQGNDELAEFTETLNRVMERNYHHNKELIIAKEDAISANKAKSAFLANMSHEIRTPLNGI 63

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E++    +    +   +E + DI  S   LL L+N+ILDLS+IE+G   LS     
Sbjct: 64  IGMAEILSQSQL----SANQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 119

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L + V + + ++  +A  K+IE+   ID    + ++ DE  +RQV+ NLLSNA+KFT+  
Sbjct: 120 LREAVYDSVSVILSKAISKDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSK- 178

Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G +   + +T           S+ D+G GI   ++ ++   F Q   +I     G GLGL
Sbjct: 179 GTITTDIAYTPMSLGRGKLECSVSDSGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 238

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I + ++   GG    RS    G      L
Sbjct: 239 AICRQLVDLMGGYITARSVKGGGSTFTFCL 268


>gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56']
 gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1444

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 18/336 (5%)

Query: 157  FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKI 214
             ++  A F +F P+ +    Q   S+ V+   +   + T             L   + ++
Sbjct: 956  AVIELASFQNFTPIHLTFLEQLTQSIGVVFNMIGASMRTEELLQELQRSNTELGSRSQEL 1015

Query: 215  LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                +E +    E+  A +  +E  +     +  KS FLA+MSHELRTPLN++L  + ++
Sbjct: 1016 EEKASELEIKNREIARASASLEEKARELSRTSKYKSEFLANMSHELRTPLNSLLILARIL 1075

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                   L      EY   I  +GQ LL LINEILDLS+IEAG+ ++    + L ++   
Sbjct: 1076 ADNEEHTLT-PKQVEYAKTIAAAGQDLLQLINEILDLSKIEAGKIDVKTQRVLLSELAEY 1134

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                 +  A++K +E + ++   + + +  D + ++Q++ NLLSNA KFT+  GR+ + +
Sbjct: 1135 VERSFRQIAEQKELEFWVRVATGVPAGIMTDLQRLQQILKNLLSNAFKFTSS-GRISLEI 1193

Query: 394  GWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
               S    +              ++ D G GI   +   +  +F Q   +      G GL
Sbjct: 1194 EVASKGLTFKRETLIKAKTVLAFAVTDTGIGIPTEKQTLIFDAFQQADASTSRTYGGTGL 1253

Query: 441  GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GL I++ + +  GG+  + S    G +    LP  R
Sbjct: 1254 GLTISRELASLLGGEISLNSTPGLGSKFTLYLPAER 1289


>gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 870

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +I  I+++   LL LIN+ILDLSRIE+G  +   +  +L  +++      +L   
Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                + +  + S   +  D   ++QV+ NL++NAVKFT   G +             + 
Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E  +  +   F +      S  QG GLGL I Q+I+    G   + S+   
Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGMITVASEEGH 857

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 858 GTRFTVRLP 866


>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
 gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1082

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/314 (31%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTY--ITYHLFKSNVKILSCQAEKDDLIAELE 229
            A +  + ++     +     L  A   + +      L   +          +  I   +
Sbjct: 446 AAAAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRK 505

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           + ++   + R+ AE  +  K+ FLAS+SHELRTP+NA++GF+++I  E  GP+ N  Y++
Sbjct: 506 IMEAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRD 565

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +  +I  SGQHLL LINEILD  R EAG+  L +  + L       I +L  RA    I 
Sbjct: 566 FAINIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIA 625

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           I  K++P+   +  DE+ +RQ++LNLLSNAVK+T  GG V +T G     G  + ++D G
Sbjct: 626 IAAKVEPAARHMRGDERRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTG 685

Query: 410 PGIAEGEIPTVLTSFGQGSI-----AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            GI E E+  V  ++ +        A     +G GLGLP+ + ++  HGG   + S++  
Sbjct: 686 VGIPEPELERVPPAYTRVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGR 745

Query: 465 GVEVIAILPNTRVL 478
           G  V    P  R+ 
Sbjct: 746 GTTVTVHFPPGRLA 759


>gi|256841371|ref|ZP_05546878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737214|gb|EEU50541.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 638

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L      + +        ++ + +  F + ++ +  +       QA+K  L+ 
Sbjct: 344 LLPKDAILLNFPFKAQYPRLFRSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405
            IE  +K   +   +++D++ + Q + N+L NA+KFT+  G + +   +++  +   + +
Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSADAQDVRLYV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 630 CRISLVF 636


>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 536]
 gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
 gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
 gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 661

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 11/267 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + KS +            +A  E+ K   D  R +AE EN +K RFLA +SHELRTPL +
Sbjct: 108 IIKSELSSSRFARAIRYALARREIEKERVD--RLKAEAENRSKDRFLAHLSHELRTPLTS 165

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG++E++    +G          +  +  + +HLL+L+N +LDLS+I A + EL+ S +
Sbjct: 166 ILGYTELLMDSKVGQSAQSE----LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEV 221

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
           +L  ++ +   ++ + A +K + +       L   +  D    RQV++NL+SNA+KFT  
Sbjct: 222 NLDAMIADVYALMTIPATDKGLTLTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEK 281

Query: 386 GGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G V V++           Y ++ D G GI + +I  +   F Q +  +   + G GLGL
Sbjct: 282 -GSVDVSLWSEKRNKTDYLYFTVADTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGL 340

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI 469
            I   +++  GG   + S+  +G    
Sbjct: 341 AICNELVSKMGGDVSLTSEFGKGSCFT 367


>gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199]
 gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199]
          Length = 666

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 7/244 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  +  E  +  KS FLA++S+ELRTPLNAI+GFSE++E E  GP+ N+  KEY 
Sbjct: 422 QRALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPM-NDRQKEYA 480

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I +S   L+ L+N+ILDL+ IEAG  EL    +  + ++     + + RA+ + I+  
Sbjct: 481 RAILQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFS 540

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +ID +++ +  DE+ + Q + NL+SNA  FT  GGRV VTV           + D G G
Sbjct: 541 VRIDGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVE-DDDDMVLFRVADTGVG 599

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA  +   V   F +        + G GLGL + +S++  H G   + S+   G EVI  
Sbjct: 600 IALEDQGRVFDRFERAG-----RDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICR 654

Query: 472 LPNT 475
           +P +
Sbjct: 655 IPRS 658


>gi|84623382|ref|YP_450754.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367322|dbj|BAE68480.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1191

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V +   +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402
             +     +D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 905  QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023

Query: 462  LREGVEVIAILPNTRV 477
            L +G   +  LP   V
Sbjct: 1024 LGQGACFVVELPLRWV 1039


>gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
          Length = 949

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
 gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
          Length = 396

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +E+ +     +  +   +  R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 142 LCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 201

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++     +        ++Y   I R+ + LLNL N+ILDLS +EA     +   I LIDI
Sbjct: 202 KL----VIDAECTNEKEQYAEIIERNSEILLNLFNDILDLSSLEADSLSFNIRPIKLIDI 257

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       + +    ++      +   V  D   + Q+I NLLSNA KFT   G +H 
Sbjct: 258 CLQLEQQFCYKVKN-GTKLILDDVDTELYVSGDWNRIIQIISNLLSNAAKFTPK-GEIHF 315

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    + T+   F      I    QG GLGL + + ++  
Sbjct: 316 GY-REKEDFVEFYVKDSGIGIPAERVATIFQRF----GKINDFVQGTGLGLTLCRMLVEK 370

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 371 MGGRIWLRSQEGKGSRFYFTLPLIR 395


>gi|89893568|ref|YP_517055.1| hypothetical protein DSY0822 [Desulfitobacterium hafniense Y51]
 gi|89333016|dbj|BAE82611.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 457

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 140/352 (39%), Gaps = 9/352 (2%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             +       +   +          +I    N +L  A+  +   + +A  +   +S  +
Sbjct: 115 IFLVAVPLKGQNQIMGSVIISSPLSAIKQHVNSILVTALIGAVIGIFLATISSIFISRKL 174

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           +   +                 +       ++ + E   L     V  +   E     E 
Sbjct: 175 VRPLMKMEETAKSIADGEYGRQIQ------VTSEDEIGRLAHSFNVMSAELKEKIDAIER 228

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +   L+ +SHELRTPL  I G++E ++   +   + E  + Y+  +    + L  L
Sbjct: 229 YDRLRQELLSDVSHELRTPLTVIQGYTEAMQDGLV--KSKEQEQHYLKLVIDEIERLRRL 286

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++ DL  +EA         + +  +V+  +  L+  A+ K I++   I     ++W +
Sbjct: 287 VEDLQDLKGLEAMDSINDMDYVVMNKLVQISVERLKYFAESKEIQLEVIIPEKQITIWGN 346

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NL  NA+K +   G V + +G T     YI++KD+G GI + E+  +   F
Sbjct: 347 SDRLKQVLTNLADNAIKHSDSKGNVRIELG-TEKSWAYIAVKDSGSGIPKEELQNIWERF 405

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   +      G GLGL I + I   H G+  + SKL  G       P  +
Sbjct: 406 YKVDKSRSRRGTGTGLGLSIVKRITEMHSGKVAVESKLGNGARFTVYFPLEK 457


>gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
          Length = 595

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 6/262 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +++  A     + +LE        +  +A   N AKS FL ++SHELRTPL +I GF+E
Sbjct: 330 TLIALGAGFLRGLHQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAE 389

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E      L   +Y+E  G I  + +HL  L++EILDL++++AG   +     ++ ++V
Sbjct: 390 LMEQR----LEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELV 445

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              + +  + A +K + +   I P +  V   D   ++Q++ NLLSNA+KFT  GG V +
Sbjct: 446 GTTVDLFAISAVQKGLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTREGG-VRL 504

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                 G      + D GPGI       +   F QGS  + +   G GLGL +++ +   
Sbjct: 505 ETDTADGHSVRFRVTDTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLALSRGLAEL 564

Query: 452 HGGQFLIRSKLREGVEVIAILP 473
            GG+  + S+  +G      LP
Sbjct: 565 MGGRLTVASEPGQGACFTLELP 586


>gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
           11862]
          Length = 629

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           ++ R   E       +F++++SHELRTPL ++  + + ++   +   + E  + ++    
Sbjct: 377 EQQRIELER-----RQFVSNVSHELRTPLTSVKSYVDALQEGAID--DPEVARNFLAVAQ 429

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEI 350
                ++++IN++L+LSR+++G  +L    +++ ++    +    +     +       I
Sbjct: 430 DETTRMIHMINDLLELSRMDSGTMKLETEYVNVGELFNYILNRFDMIIANDDKPEKYYTI 489

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            ++I      V  D     QVI N+++NA+K++  GG V   +   + +   +SI D G 
Sbjct: 490 KREIPKVQIWVELDTSKFTQVIDNIMNNAIKYSPDGGVVTARM-IDNQKEVVLSITDQGL 548

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + ++  +   F +   A   A+ G GLGL I++ I+   GG+  + S   +G     
Sbjct: 549 GIPKKDLGHIFDRFFRVDKARSRAQGGTGLGLAISKEIIERFGGRIWVESAEGQGSTFSI 608

Query: 471 ILPNTRVLNF 480
            LP       
Sbjct: 609 SLPYEPYDPT 618


>gi|327403356|ref|YP_004344194.1| multi-sensor hybrid histidine kinase [Fluviicola taffensis DSM
           16823]
 gi|327318864|gb|AEA43356.1| multi-sensor hybrid histidine kinase [Fluviicola taffensis DSM
           16823]
          Length = 821

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 8/256 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  + +      +  + ++++   AKSRFLA+MSHE+RTPLNAI GF+E +  E +    
Sbjct: 310 LFKKSKETNFQLELAKDKSDQLTEAKSRFLATMSHEIRTPLNAISGFTEQLFFEPLNASA 369

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  K     I  S +HL  + NEILDLS++E    +L + A +  + +       +L+ 
Sbjct: 370 AKKVK----IIRNSVKHLSQITNEILDLSKLEKDHIQLEKIAFNPANEIAMLQEQYELQV 425

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401
           QE+N ++  ++D +   +V  D    RQ+I+NL+SNA KF+  G   + +       +  
Sbjct: 426 QERNNQLVVELDQAPFPNVLGDPLRFRQIIINLISNANKFSKDGLITILLKFEKVDDKQI 485

Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I ++D G G++ G+   +   F Q  + +     G GLGL I + I+    G   + 
Sbjct: 486 RCLIEVQDQGIGMSTGQKERIFEPFEQADLTVTRKYGGTGLGLSITKQIIDKQNGSIRVN 545

Query: 460 SKLREGVEVIAILPNT 475
           SK   G      +P  
Sbjct: 546 SKEGIGTTFFIEIPFE 561


>gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 605

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 364 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 419

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 420 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 479

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  + +        D   + Q+I NL++NA+K T   G + +             
Sbjct: 480 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 537

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 538 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 593

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 594 GSEFSFILP 602


>gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 622

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  + +        D   + Q+I NL++NA+K T   G + +             
Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 611 GSEFSFILP 619


>gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 622

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  + +        D   + Q+I NL++NA+K T   G + +             
Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 611 GSEFSFILP 619


>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|206977539|ref|ZP_03238433.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217958875|ref|YP_002337423.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|222095034|ref|YP_002529094.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|229138086|ref|ZP_04266684.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|206744257|gb|EDZ55670.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217063391|gb|ACJ77641.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|221239092|gb|ACM11802.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|228645431|gb|EEL01665.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|324325417|gb|ADY20677.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 466

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + VT+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMVTLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
 gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 128/249 (51%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++        ++
Sbjct: 319 IQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADSD 374

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY   I  +   L+ LIN+ILDLS+IEA    +S   + +  ++      ++LR  
Sbjct: 375 EERREYYEIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRMP 434

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +++F +         AD   + Q+I NL +NA+K T   G + +       +     
Sbjct: 435 E-GVQLFLEKGSCTCCFGADSIRLLQLINNLANNAIKNTKQ-GSITLGYTCLPDKCLEFY 492

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA+ ++ ++ T F +         +G+GLGL I Q ++   GG   + S+L  
Sbjct: 493 VKDTGTGIAKDKLESLFTRFVKV----NDYVEGIGLGLAICQGLVTKMGGSMHVESELGV 548

Query: 465 GVEVIAILP 473
           G     +LP
Sbjct: 549 GSTFSFVLP 557


>gi|167647655|ref|YP_001685318.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167350085|gb|ABZ72820.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 602

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 188/471 (39%), Gaps = 23/471 (4%)

Query: 27  YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
              +     EI   H+  L         + L+++    ++       +   + +A   A 
Sbjct: 6   DRREPIPAHEIAGSHLPILRGYLLAAATYYLVISLSHPFYETGLALVVLEGLAVAAAVAG 65

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
           L L +++     ++  +       L       L    +   +   + P  L  +    L+
Sbjct: 66  LWLWRRLKTRPPQMPGLE------LAALAMNALFMANVVAYQHLHFEPAKLVYFILMALV 119

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
            A S       ++  +V  +   +++         +       A     A    T +   
Sbjct: 120 FATSAPTRRVALV--SVGAALAGLLLMAREAPGDLVGQYGFMGAAGAFAAFGMSTLMRGA 177

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTP 263
           + +     L+  A    L  ELE  + L  E +     A+  N  K+ FL +MSHE+RTP
Sbjct: 178 VMRELRARLASDALNRKLAEELEENRRLRTEAQDLAVVAQTANRVKTEFLETMSHEIRTP 237

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG ++ +E +T+    +   +  +  I  SG  LL++IN +LD+SRIEAG+ E+  
Sbjct: 238 LNGVLGMAQAMERDTL----SARQRTRLAMIQDSGATLLDVINAVLDISRIEAGKMEIVR 293

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           +   L  +      +    A +K ++   ++    +     D   +RQV+ NL+SNA+KF
Sbjct: 294 APFRLDALTDTLRQLYGGLAHDKGLDFSLEVATETAGWRDGDVARLRQVLSNLISNAIKF 353

Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T  GG   VTV      RG   ++ D G G+ EG    +   F Q   +      G GLG
Sbjct: 354 TDAGG---VTVRIDGDVRGVNCTVSDTGVGVPEGRRAQIFEKFVQVDSSSTRRTGGSGLG 410

Query: 442 LPIAQSIMANHGGQFLI--RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           L I + ++   GG+      S+   G      +P   V +  P  + E+ +
Sbjct: 411 LAICRELVTLMGGRIDFIDTSEAG-GACFTFQIPCPVVASPEPAASVEAVE 460


>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
 gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
          Length = 1125

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 18/384 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W L+  +           + K   +++ ++I  +       +  ++   + +  + + +
Sbjct: 330 TWALILELPEEEAFARIYQLEKIFVVVMVIAILLVVIGSHLLSHSITAPLLKLTWAAEQV 389

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +  +            +         + +S    L+   E++    ELE    L  +  
Sbjct: 390 SAGDLDQKINNTDREDEIGRLAVSFARMQRSVRDKLALIREQNK---ELEQNIQLIKQKN 446

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  ++ +  K  FLA+ SHELRTPL+ ++G +E +     GPL  E  K  +  I  SG+
Sbjct: 447 EELQQADRMKDDFLATTSHELRTPLHGMVGIAESMLAGAEGPL-PERQKHQLRMIINSGE 505

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NL++++LD  ++  G  E+S  A+   + VR  I +       K + I  ++   L 
Sbjct: 506 RLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQVPIDLP 565

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V AD + + QV+ NL+ NA+K+T   G++ ++     G+   I + D G GI   ++  
Sbjct: 566 LVRADGQRLEQVLYNLIGNAIKYTDE-GKIIISATVLQGQ-LRIQVVDTGQGIPSDQLEY 623

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +     Q   +     QG GLGL I++ ++   GGQ  + S+   G      LP     +
Sbjct: 624 IFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEED 683

Query: 480 ------------FIPEDNHESTQY 491
                         P    E   Y
Sbjct: 684 KAKTRLANNVHFAAPHAELEPVDY 707


>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
           TXDOH]
          Length = 926

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 165/429 (38%), Gaps = 34/429 (7%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
                   +  +   ++   + +      +  +     +           LL  ++    
Sbjct: 269 TIAAALALRFSLVTGFAAGIIVM---LWVVAVQFDRKGLIPNYRRA--QRLLESEVLNRT 323

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
                 +        +   + +             +N ML  +   S  P+   L     
Sbjct: 324 ILRTAPVGLGLLSAQDGSVLLQ-------------NNAMLELSARTSGEPLPNRLWDAYR 370

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAELEVAKS 233
            +    +     +L   L+     +  ++ ++NV     +     L     I+  + ++ 
Sbjct: 371 QTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISMRKESEL 430

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R  +++ N AKS FLA+MSHE+RTPLNAI+G  E++    +         E +  
Sbjct: 431 KLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQSERLQV 486

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +      LL++IN+ILDLS++E+G+  L      +  +++E +      A+ K +++   
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSN 546

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408
           +   ++  +  D   +RQ++ NL+ NA+KFT   G + V V             I + D 
Sbjct: 547 LGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIEIWVNDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    I T+   + Q   +I     G GLGLP+ + +    GG   + S    G  V
Sbjct: 606 GIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTV 665

Query: 469 IAILPNTRV 477
             +LP    
Sbjct: 666 TVVLPLREA 674


>gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BL21(DE3)]
 gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 933

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
 gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
          Length = 857

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|229160352|ref|ZP_04288350.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
 gi|228623076|gb|EEK79904.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
          Length = 466

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTHLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   +DP +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRIATNLDPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLEKI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLDNLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWSI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  VI  L
Sbjct: 444 ESEKGNGTTVIIKL 457


>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
 gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
 gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
          Length = 933

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|325927603|ref|ZP_08188833.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542037|gb|EGD13549.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1181

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 228  LEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                + +  + R++ AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    N  
Sbjct: 792  RRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL----NAK 847

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y+  I ++G HLL L+N+ LDL+RIEAG+ EL +       + +E    +   A  +
Sbjct: 848  QRGYVDAIRKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELAHFMHPIADAR 907

Query: 347  NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + +  +   P    V  D   +RQ+++NLL NA+KF    G V +TV    G      +
Sbjct: 908  GLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAER-GEVSLTVSQ-HGDALRFKV 965

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +D GPGI   +   +   F QG  A   S   G GLGL I Q +     G+  +RS+L  
Sbjct: 966  RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1025

Query: 465  GVEVIAILPN 474
            G +    LP 
Sbjct: 1026 GTQFTVDLPL 1035


>gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 913

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 19/272 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E +++AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   + E  +
Sbjct: 533 EKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VSCDDPEEKE 588

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+G I  + + LL LIN+ILDLS+IE+G  E      +L  +  E   M+Q +     +
Sbjct: 589 EYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEV 648

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
           E+          ++ D   ++QV +N L+NAVK T  G   ++ +G++    G    ++D
Sbjct: 649 ELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVED 705

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI       V   F +         QG GLGL I+++I+    G+    S    G  
Sbjct: 706 SGVGIPLEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGST 761

Query: 468 VIAILPN------TRVLNFIPE-DNHESTQYK 492
             A +P         +++  P+    +ST  K
Sbjct: 762 FWAWIPCEVEIQEEDIISVSPQTPEQQSTPNK 793


>gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1719

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 18/245 (7%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             +  K  F++ +SHELRTPL AI G   ++E   +      T    +     + + L  L
Sbjct: 1469 LDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPL-TANRMLKVALNNSERLARL 1527

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            +N+ILDL R+E+G+ EL      + D++ + +  ++  A   +I I        + VWAD
Sbjct: 1528 VNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTAVE--AQVWAD 1585

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------QYISIKDNG 409
               + Q ++NLL N +KF+  G  + +    ++G                    SI+D G
Sbjct: 1586 FDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQG 1645

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI   ++ ++   F Q  ++    + G GLGL I +SI+  H G+  + S + +G    
Sbjct: 1646 RGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVESVVGQGSIFY 1705

Query: 470  AILPN 474
              LP 
Sbjct: 1706 FTLPL 1710


>gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 856

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 15/312 (4%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238
             I +    AT       I    ++ N+  +      ++++A+ +       A+  S   
Sbjct: 409 PHIRMCAKGATLTGINIAIREKTYRWNLSPIFVDKGINNIMAQGQDVTSFVDAEIQSQAA 468

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK AEE    ++ FLA MSHELRTPLN ILG S++++    G ++N    E++  +  SG
Sbjct: 469 RKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLK----GKISNTDDIEHLDVLCNSG 524

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
           +HLL ++N+ILD S+IE G++ +  +   L++++     +      EK I    + +  +
Sbjct: 525 EHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPLCDEKGIGFVVETNVSN 584

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAE 414
            +   +D+  + Q++ NL+SNA+KFT   G V V++   G +      IS++D G GI  
Sbjct: 585 NTFAHSDQVRLNQILFNLVSNAIKFTHE-GEVTVSLFCDGESPESRLNISVRDTGIGIER 643

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             I  +   F Q          G GLGL I  S++    GQ  I S +  G +    +P 
Sbjct: 644 ERISHIFEPFVQAEATTTREYGGSGLGLAIVHSLVEMLNGQIEIESSIGYGTKFSLSVPI 703

Query: 475 TRVLNFIPEDNH 486
               +    +  
Sbjct: 704 ELTESVEQVETS 715


>gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 910

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 19/272 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E +++AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   + E  +
Sbjct: 530 EKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VSCDDPEEKE 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+G I  + + LL LIN+ILDLS+IE+G  E      +L  +  E   M+Q +     +
Sbjct: 586 EYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
           E+          ++ D   ++QV +N L+NAVK T  G   ++ +G++    G    ++D
Sbjct: 646 ELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVED 702

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI       V   F +         QG GLGL I+++I+    G+    S    G  
Sbjct: 703 SGVGIPLEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGST 758

Query: 468 VIAILPN------TRVLNFIPE-DNHESTQYK 492
             A +P         +++  P+    +ST  K
Sbjct: 759 FWAWIPCEVEIQEEDIISVSPQTPEQQSTPNK 790


>gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1131

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 7/352 (1%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             P     +      SA L + +  + +           +S    + A     I++ +  
Sbjct: 624 FAPSPIGEDGPPCALSAHLGVQVICADIRADASFANHHAISAAMGIAACCVTPILASNGQ 683

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        T     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 684 VLGTLNIYYDRPHLPTLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  FLA++SHELRTPLNAILG+S++++ E   P +       +  I RS +    +I
Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSQLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 801 DDLLDMSVILSGKIRLQAERFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT  GG V V +         + ++D G GIA   +P V   F
Sbjct: 861 AGRLQQVLTNLLSNALKFTPAGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
            Q          G+GLGL I++ ++  HGG     S    +G     +LP  
Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGILDASSAGEGQGALFTIVLPFR 971


>gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
 gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
          Length = 857

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITSAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 970

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 9/271 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+      +++A+   LAKSRFLA+M+HE RTP+NA++  + +   E      N
Sbjct: 595 ITERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLTRLALEE---EELN 651

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+G + R+G+ LL +IN+ILD S+IEAG+ EL      L  ++ + +  L   A 
Sbjct: 652 PRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLIDDVVRPLSPNAH 711

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K I+   ++   L   +  D   +RQV+ NL  N +KFT   G V + V     +G  +
Sbjct: 712 DKAIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQ-GEVLLKVQLLKRQGDQV 770

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    + D+G GI+  E   +   F Q   +I     G GLGL I + ++   G +  + 
Sbjct: 771 TLAFMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQLLVLMGSELEVE 830

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S   EG      +      +       +  +
Sbjct: 831 SVPGEGSNFAFTIQLALADDTSTPAASDPEE 861


>gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
          Length = 933

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
          Length = 933

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|325927602|ref|ZP_08188832.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542036|gb|EGD13548.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1191

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +    ++D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 905  QLAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRLTTLPQYTRQGLR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSE 1023

Query: 462  LREGVEVIAILPNTRVLNFIPEDNHES 488
            L +G   +  LP   V + +P     +
Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049


>gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 723

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 9/276 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +T  + +        + E  D     ++A + ++   +  E     +   ++ +SHE
Sbjct: 437 VRALTDAVRRMREGRGDSRVEVRDSGELGQLADAFNEMA-EHLERLEKQRRAMVSDVSHE 495

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL+ + G+ E  +            +E +G +      L ++++++ DL+  +AG+ 
Sbjct: 496 LRTPLSNLRGWLEAAQDGVADLD-----RERMGMLVGETLLLQDIVDDLQDLALADAGKL 550

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            LS   +    +V + +   +LRA    + +    +     V AD   + QV+ NLL NA
Sbjct: 551 RLSPEPVDAGALVEQVVDSQRLRAAGAGLRLV--AEAGDVVVVADRTRLVQVVGNLLGNA 608

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           ++ T   G V V     SG    + + D G GI   ++P V   F +   +      G G
Sbjct: 609 LRHTPAPGTVTVRARR-SGGEAVVEVADTGVGIPAEDLPHVFDRFWRADKSRNRRTGGSG 667

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL I ++++  HGG   + S + EG      LP  
Sbjct: 668 LGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLPLE 703


>gi|255658208|ref|ZP_05403617.1| sensor histidine kinase [Mitsuokella multacida DSM 20544]
 gi|260849517|gb|EEX69524.1| sensor histidine kinase [Mitsuokella multacida DSM 20544]
          Length = 434

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             +    + +F A  SHELRTPL  ++  +E+++ +    + +   ++ I D+    + +
Sbjct: 202 LRQAYEKQRQFAADASHELRTPLAVVMASAELLQNDP--SIKSPFLRQVIDDVRDEVKKM 259

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++L ++R +    +L     +L  ++ +   ++Q  A +K I++  +  P +  +
Sbjct: 260 TKLVSDLLVVARSDNKALKLKPQKFNLSALIEQTARLMQPLADQKKIDLQAEHLPKV-EI 318

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            ADE+ +RQ++L L+ NAVK+T  GG+V V    T       ++ D G GIA+ +   V 
Sbjct: 319 QADEQKIRQLVLILVDNAVKYTPDGGKVSVRYESTEKGKVRFAVSDTGIGIAKEDQAKVF 378

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL IAQ I+  H G+  I+S+L +G      L
Sbjct: 379 DRFYRVDKARSREMGGNGLGLAIAQEIVHLHKGRIWIQSELGKGTTFFVEL 429


>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SE11]
 gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
          Length = 949

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|187929794|ref|YP_001900281.1| integral membrane sensor hybrid histidine kinase [Ralstonia
           pickettii 12J]
 gi|187726684|gb|ACD27849.1| integral membrane sensor hybrid histidine kinase [Ralstonia
           pickettii 12J]
          Length = 631

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79
             GL   + ++ D     L          I    VL    +  ++  +  P    W LI 
Sbjct: 32  KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 91

Query: 80  LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L + A       G +   + + +      W   + V     G+ W     +   + + E+
Sbjct: 92  LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 151

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195
            ++     ++I ++ +A+ +     +  L     ++A              + L G+L  
Sbjct: 152 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 209

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +  T    ++  + V+ +  + E   L      A+   DE ++RA   +  KSRFLA+
Sbjct: 210 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 262

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SH+LR P++AI+   E +         +E+    +  +      +  L   +LDLS++E
Sbjct: 263 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 318

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           + +   +   + L +++ E +      A+ K + +  +I P      A+   +R+ + NL
Sbjct: 319 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLAARIPPLPVYGMAEPVLLRRALFNL 378

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L NA+++T  GG  V + V     +   I + D G GIA      + +++ Q     +  
Sbjct: 379 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 435

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            QG+GLGL I +  +    G F +RS    G      L         P       + K
Sbjct: 436 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 493


>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli HS]
 gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ATCC 8739]
 gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           HS]
 gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           ATCC 8739]
          Length = 949

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|88860786|ref|ZP_01135423.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
 gi|88817381|gb|EAR27199.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
          Length = 919

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               R +AE+ N AKSRFLA+MSHE+RTPLNA++GFS++ +       ++     YI  I
Sbjct: 542 LQLARAQAEQANKAKSRFLANMSHEIRTPLNAVIGFSQLAKQT----DDSVVLGSYIDKI 597

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   LLN++N+ILD+S+IE+ +  L +  + L  ++    I+ +  A +K+++     
Sbjct: 598 CLSSNTLLNIVNDILDISKIESEKLVLEQIPLDLHALLNRVSIIFEPIATQKSLQWQLDN 657

Query: 355 D-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNG 409
             P+      D   + Q+++NL  NA+KFT   G + +T              I++ D+G
Sbjct: 658 QLPNQQWYVGDPTRIEQILINLCGNAIKFTHS-GFIKLTARQICLNEQQAQLEIAVSDSG 716

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  +  +F Q   +      G GLGL I+Q +     G   I SK  EG    
Sbjct: 717 IGIKSENLKMLFDAFTQADDSTSRRFGGTGLGLTISQELSHLMQGNITITSKEDEGSTFA 776

Query: 470 A--ILP 473
               LP
Sbjct: 777 FHCHLP 782


>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
 gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
          Length = 775

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 277 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 332

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 333 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 392

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 393 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 450

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 451 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 510

Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494
              +P         +   E +  +C+
Sbjct: 511 TVRIPLYGAQYPQKKGVEELSGKRCW 536


>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
          Length = 933

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494
              +P         +   E +  +C+
Sbjct: 669 TVRIPLYGAQYPQKKGVEELSGKRCW 694


>gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
 gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
          Length = 1190

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 127/266 (47%), Gaps = 21/266 (7%)

Query: 238 TRKRAEEENL-----------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            RK AEE              AK++FLA MSHE+RTP+N +LG   ++    + P+    
Sbjct: 666 ERKAAEEALRVAKEKAEAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRDTDLDPV---- 721

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K Y+     SG+ LL LIN+ILD S++EAGR EL ++   L  +V+    +    AQEK
Sbjct: 722 QKAYVKTARESGRSLLELINDILDFSKLEAGRTELEKAPFRLKTVVKSIADLFMPIAQEK 781

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401
            + I       +  V   D   +RQV+LNL+SNAVKFT   G + ++V            
Sbjct: 782 GLTIDLNYPADVPQVVSGDAGRLRQVLLNLVSNAVKFT-EIGSIDISVSLDEDDPVQPVF 840

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             ++KD G GIA+ +  T+   F     +    + G GLGL I++ + +   G+  + S 
Sbjct: 841 RFTVKDTGIGIAKDKHQTLFGDFVTIDTSYTKKQGGTGLGLAISKRLSSLMDGEIHVESL 900

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487
              G      +P  R  + I     E
Sbjct: 901 PGAGSTFHFCVPLERADDAIELPEPE 926


>gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
          Length = 949

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 467

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 11/312 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +  S     V       ++  ++   LA  +   L      T  + K ++      A +D
Sbjct: 145 ILHSMTLATVTGVILTTVAALLVAAWLARRITEPLRALIDATRRIQKGDLGPRLSIATRD 204

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +     +    ++ +  +  E     +   +A ++HELRTPL  I G  E+I+       
Sbjct: 205 EFGEVAQAFNEMALQLSRIEET----RRHLVADVAHELRTPLTIIQGQLELIQQGVKRAE 260

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E +  I      L  L+ ++  LS  EAGR  L ++   L  +    +   Q+ 
Sbjct: 261 P-----ETLLPIQDEVMRLTRLVGDLHQLSLAEAGRLPLEKTWTDLTALAGRIVDNFQIE 315

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+ K I +  +   S+  V+ D   M QVI+NL+ NA+++T  GG + + V    G    
Sbjct: 316 AEAKEITLSLEASDSIP-VYVDPHRMTQVIVNLVGNALRYTPTGGTIRIVV-RQEGSEAI 373

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +++ D GPGI    +P +   F +   A    E G GLGL IA+  +  HGG+    S+ 
Sbjct: 374 LAVSDTGPGIRPEHLPHIFDRFFRSDEARSREEGGTGLGLAIAKEFVEAHGGRIGAESRP 433

Query: 463 REGVEVIAILPN 474
            EG      LP 
Sbjct: 434 GEGTTFTVRLPK 445


>gi|304320353|ref|YP_003853996.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299255|gb|ADM08854.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 575

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 172/444 (38%), Gaps = 28/444 (6%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R  P     + +  +  +   +         I L +  + L+                 
Sbjct: 1   MRELPTRLFVITVGVSAVSATGRLDHLL-CVAIYLLILGSQLTDAIVWYRLSRCTESALP 59

Query: 106 WRIWLLVGQIAI-GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
           W     V       +C+ L  +    +  P    I  +      L  +   N  +   + 
Sbjct: 60  WHCRFGVLSAFQASMCYGLFPVYVWISDIPAGQAIAYTMLSGNLLHTALHQNTRILVMIS 119

Query: 165 LSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +  P+V +A      M++              +     +        ++ ++ Q E++ 
Sbjct: 120 AAIPPLVYMAGLPIYQMAVDPSFYLRDCAALLTIEMLVILALLSGAKAIRTVTQQREEER 179

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             AE                  + AKS FLA+MSHE+RTPLN ILG +E +    +    
Sbjct: 180 AAAEQ----------------ASRAKSVFLATMSHEIRTPLNGILGMAEALAASAL---- 219

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +     I  SG  LL ++N  LDLS+IEAG+ E+ ++   L   +     +   +A
Sbjct: 220 PEDSRSKAETIRDSGALLLQMLNNSLDLSKIEAGKLEIDKAPFRLDRAIERVHALFAQQA 279

Query: 344 QEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
           +   +     ID SL  +   DE+ + Q++ NL+ NA+KFT  GG V + +    G    
Sbjct: 280 RNAGLTFTTDIDRSLPMLREGDEQRLTQILTNLIGNALKFTQSGG-VTIGLHRGKGATDI 338

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +S+KD G G+++ +   +   F Q   A       G GLGL I +++ A  GG+ +++S
Sbjct: 339 VLSVKDTGIGMSDEQQAKIFMPFTQAEGATTTRRFGGTGLGLSIVKALTAQMGGEVILKS 398

Query: 461 KLREGVEVIAILPN-TRVLNFIPE 483
               G E    LP        +PE
Sbjct: 399 VAGVGSEFSVCLPLPEAATKSLPE 422


>gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
          Length = 814

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 135/319 (42%), Gaps = 11/319 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             AV   F P   A+   +      LD     + +   +    +         + +   A
Sbjct: 211 VQAVPEEFRPTFEAMQRISGDLHRELDQRELALTSLRQALARLLPDAPQDPATQGMDLGA 270

Query: 220 EKD---DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             D    ++ E E  +    E ++ AE  N AKS FLA MSHE+RTP+N I+G + +   
Sbjct: 271 LADLVLQVVREREADRVTLQEAKQAAEAANRAKSEFLAVMSHEIRTPMNGIVGMTGL--- 327

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +G       + Y+  + RS   LL +IN++LD S+IEAGR  L      L  +VR  +
Sbjct: 328 -ALGTTLTPQQRGYLTMVRRSADALLGVINDVLDFSKIEAGRLTLDPRPFRLHALVRSTL 386

Query: 337 IMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
             L  +A+EK + +  +        +  D   +RQ+++NL+ NA+KF+  G   V V   
Sbjct: 387 ASLDNQAREKGLRLAYEPAEDFSHRLIGDPGRLRQILVNLVGNAIKFSETGAITVRVRTE 446

Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       ++D G GI   +   +   F Q   +I     G GLGL I   ++   
Sbjct: 447 ALRDGQVVLRFEVQDQGIGITPSQQQAIFQPFTQADASITRHYGGTGLGLAICGKLVQAM 506

Query: 453 GGQFLIRSKLREGVEVIAI 471
            G+  +RS   +G      
Sbjct: 507 EGEIGVRSAPGQGSTFHFT 525


>gi|260438167|ref|ZP_05791983.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
 gi|292809355|gb|EFF68560.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
          Length = 986

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/472 (22%), Positives = 187/472 (39%), Gaps = 51/472 (10%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL--AVYAANLSLGKKVMN 95
           + LH++    +S +     +L       F       ++ +  +   +    + L     +
Sbjct: 202 LILHIKGKKDISILSLSVGVLAVASWLIFDNMLYQYIFKIYYIDGILGYLVIMLAPAFFD 261

Query: 96  SDIKIGEVYVWRIWLLVG---QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
             +   + Y +     V     I   + +T L       +    L +     + IA    
Sbjct: 262 HYLNREQEYRYCRLYTVSIVVVILNFIVFTTLHFTGVVDFYSSRLPMNIVLAIQIASVAY 321

Query: 153 ALSN---------FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L           + +    FL F    +          +     +  ++   L     +
Sbjct: 322 TLIMDLIKGYIKEYKVIAQGFLGFAICALVEIIMINFGNNRNTDGMFMIIGLYLLLIMAV 381

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +  +                               A + N  KS FLASMSHE+RTP
Sbjct: 382 VNFIKNNIRIREKAVY----------------------ALKANQLKSNFLASMSHEIRTP 419

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NAI+G +++I    +    ++  KEY G+I  +G  LL++IN+ILD SRIE+G+ EL E
Sbjct: 420 INAIMGMNDMI----LMSDPDKAIKEYAGNIRSAGDTLLSIINDILDFSRIESGKIELVE 475

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
           +  S I ++ + I+M++ +A+ K +E   K D  +  S  ADE  +RQ++ N+L NAVK+
Sbjct: 476 NTFSTISMLNDVIMMIKGKAENKGLEFIVKADKEMPSSFKADEVKIRQILTNVLGNAVKY 535

Query: 383 TAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           T  G   + +   +   +    +++ D G GI E     +   F +      S+ +G GL
Sbjct: 536 TEKGSIELIMKGSYVEDKYVLNVTVTDTGIGIKEEFKDKIFNKFERAD--TMSSVEGTGL 593

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           GL I +  +   GG     SK  EG E    +P         ED+     YK
Sbjct: 594 GLSITKKYLGIMGGTISFDSKYGEGSEFYISIPLNV------EDDTPIGDYK 639


>gi|227532779|ref|ZP_03962828.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189613|gb|EEI69680.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 636

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +    ++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLSKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 1234

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 5/272 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  L ++N ++   Q + +    ELE ++   +   ++ ++ +  KS FLA+MSHELRTP
Sbjct: 551 TEELQQANAQMEESQQQLEQQNRELEESRLEQEAKARQLDQASKYKSEFLANMSHELRTP 610

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+I+  S+++     G + +E  K +   IHRSG+ LL LIN++LDLS++EAGR ++  
Sbjct: 611 LNSIILLSKMMVNNDDGAVKDEALK-WAQVIHRSGEDLLRLINDVLDLSKVEAGRMDVHL 669

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           + ++  ++  E   M +  A++K +E           V +D   + Q++ NLL+NA+KFT
Sbjct: 670 ATLNSRELCAELQGMFEHLARDKGLEFVVDDRLQSDFV-SDPDKLSQILRNLLTNAIKFT 728

Query: 384 AIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             GG V +++           IS++D+G GI   +   +  +F Q   +      G GLG
Sbjct: 729 RSGG-VTLSMSRHPDLPLPVRISVRDSGIGIPAEKKSVIFEAFQQADGSTSREFGGTGLG 787

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           L I+       GG   + S   EG E I  LP
Sbjct: 788 LTISLRFAQMLGGTIELESAPGEGSEFIVWLP 819


>gi|322708265|gb|EFY99842.1| putative histidine kinase HHK1p [Metarhizium anisopliae ARSEF 23]
          Length = 2550

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 30/312 (9%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-LAK 249
              +   L     I+Y    S   +    AE   +++  + A + + E   +A+     AK
Sbjct: 1894 VTVLQLLVNQIGISYSNALSMKSVEKISAENRGMVSVQKRALAKALEAETKAKHAEAEAK 1953

Query: 250  SR-------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                           FLA++SHELRTPLN ++G SE++    +    N    E    I  
Sbjct: 1954 RNVKLAEEAAKAKAIFLANVSHELRTPLNGVIGNSELLRDSDL----NREQLEMADSIRV 2009

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQ 352
            S   LL +IN+ILD S++EA + +L   A +  ++VRE +  +    + +  +KN++I Q
Sbjct: 2010 SADLLLTVINDILDFSKMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQ 2069

Query: 353  KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
             I+     ++ D   + QV+ NL+ N++KFT   G V +     +           ++D 
Sbjct: 2070 DINLPPMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSVTIGARLDAETKDSATLTFWVRDT 2128

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE 467
            G GI   ++  +   F Q   +      G GLGL I +S++     G+  + S+  EG  
Sbjct: 2129 GIGIPAQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTT 2188

Query: 468  --VIAILPNTRV 477
                      + 
Sbjct: 2189 AWFTVTFEKAKA 2200


>gi|229189481|ref|ZP_04316498.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
 gi|228594072|gb|EEK51874.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
          Length = 466

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  VI  L
Sbjct: 444 ESEKDKGTTVIIKL 457


>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
 gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|187478370|ref|YP_786394.1| virulence sensor protein [Bordetella avium 197N]
 gi|115422956|emb|CAJ49485.1| virulence sensor protein [Bordetella avium 197N]
          Length = 1219

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/271 (32%), Positives = 138/271 (50%), Gaps = 9/271 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E         E ++ A+  N AKS FLA+MSHE+RTP+NAI+G  E+   E   P + 
Sbjct: 698 LTERIRLLRDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAIIGMLEL---ELRRPADQ 754

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T +  +   + S + LL+LI +ILD+S+IEA R ELS     L  ++   I + Q  A+
Sbjct: 755 ATDRSALQITYDSARSLLDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLAR 814

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402
           +  + +  +IDP     V  D   ++QVI NL+SNA+KFT +GG +  + V         
Sbjct: 815 QHGLSLTLQIDPPHPPHVLLDATRLKQVISNLVSNALKFTEVGGVIVSLKVRTEEDGRAK 874

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           I   + D+GPGI+  +   +   F Q    A  +   G GLGL I++ ++   GG F + 
Sbjct: 875 IELAVDDSGPGISSADRQRLFEPFTQVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDLS 934

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S   +G  +  +L N  +   + E     T+
Sbjct: 935 SIPGKGTRIDVLL-NADITTAVEETASPETE 964


>gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
 gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
          Length = 857

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1182

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 3/291 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           LA + +        L ++NV++       +    EL  A+        R E+ +  KS F
Sbjct: 432 LADSQARLKEQQAELEQTNVQLEQYAQRLERQKDELVTAQEALSANAARLEQSSRYKSEF 491

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+ L  + +++    G L +E  + Y   IH S   LL LIN+ILDLS
Sbjct: 492 LANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR-YAETIHASNSDLLVLINDILDLS 550

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++EAG+  +    +SL  +++      +  A  K + +  +  P    ++ +D + + Q+
Sbjct: 551 KVEAGQITIEPETVSLDALLQSLRETFEPMAAAKGLALALERTPGTPATLVSDGQRVTQI 610

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNA+KFT   G V +T+     R   + ++D+G GIA  ++  +  +F Q   + 
Sbjct: 611 LRNLLSNALKFT-EHGAVTLTISAEGQRMVRLDVRDSGIGIAADKLELIFEAFQQADGST 669

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                G GLGL I++      GG+  + S+  +G      LP        P
Sbjct: 670 SRQYGGSGLGLSISREFARLLGGRIGVASEPGKGSVFTLWLPLDPAFAQAP 720


>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella dysenteriae Sd197]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 425

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 238 TRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            R+     +     + +F+A  SHELRTPL  I   +E++       + +E+ +  + +I
Sbjct: 184 ARRAMVPIQAAWEKQQQFVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIR--VTNI 241

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            R  + +  L+ ++L L+R +A + EL   A+SL ++V       +  AQ +   +   +
Sbjct: 242 VREVRRMTRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAV 301

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
              L  V  D + + Q+++ LL NAVK+T   G + +T G   G    ++++D+G GI  
Sbjct: 302 YEQLELV-GDRERLYQLLVILLDNAVKYTPPPGHILIT-GVRQGSHILLTVEDSGQGIPP 359

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++P V   F +G  A    + G GLGL IA+ I+  HGG+  + SK+  G +   +LP 
Sbjct: 360 EDLPRVFDRFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLPV 419

Query: 475 T 475
            
Sbjct: 420 K 420


>gi|332995573|gb|AEF05628.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2]
          Length = 1121

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 175/375 (46%), Gaps = 17/375 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            + L++  T           A   ++ SI  L    +P     +     + +    ++S 
Sbjct: 555 SIDLLKTLTTPMSQFIALTFALSCVSASILYLVYLQVPSTSDANVLFADMLIKIFFLLS- 613

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241
                    ++   LS+   +     +  +K L  QA    D I   EV     ++ +  
Sbjct: 614 ---------IIIGVLSWLFILARSANRIALKELRSQASALADEIGAHEVTSIALEKAKNA 664

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR+LA +SHELRTPLN +LG+S+++         +E  ++ +G + R+G+HL
Sbjct: 665 AEAANEAKSRYLAGLSHELRTPLNVMLGYSQLL---GKDGSLSEKQRDTMGIMRRNGEHL 721

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
            NLI  +L++S+IEAGR  L     ++  I+++ I M +L+A +K +     I   L   
Sbjct: 722 ANLIEGLLEISKIEAGRLTLHRDEFNIRAILKQLIDMFELQASKKGLNFHTNISTKLPDV 781

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D++ +RQ+++NL+SNA+K+T   G V   V + +       + D G GI+E    T+
Sbjct: 782 VVGDKQRLRQILINLISNAIKYTET-GNVRFDVQYRNE-VAIFVVVDTGSGISEAHKETI 839

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q       A  G GLGL I++S+    GG+   +S L +G      L   R++  
Sbjct: 840 FQPFEQIRNTHTQAIGGTGLGLTISRSLTELMGGELSFKSLLGKGSTFTLRLMLPRIIQH 899

Query: 481 IPEDNHESTQYKCYA 495
                + S Q   Y+
Sbjct: 900 QTTPENHSQQVCAYS 914


>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
 gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|225390426|ref|ZP_03760150.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme
           DSM 15981]
 gi|225043482|gb|EEG53728.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme
           DSM 15981]
          Length = 760

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 146/316 (46%), Gaps = 30/316 (9%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           I    V  I  A +L   + F T  +  + ++++K L  +             +    E 
Sbjct: 195 ITHTTVASIGTALLLTFFIVFLTMYSNMVERTSIKELKAR-------------ERELHEA 241

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK--EYIGDIHR 296
              A++ N AK  FL+ MSHE+RTP+NAI+G + +      G   ++  +  + +  I  
Sbjct: 242 LLLAQKANNAKKDFLSRMSHEIRTPMNAIIGMAAI-----AGAHLDDRGRIEDCLTKITF 296

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S +HLL+LIN++LD+S+I+AG+  ++     +  +    + ++  +A+ +       I  
Sbjct: 297 SSRHLLSLINDVLDMSKIDAGKLTVNHEPFRIGQLTESVVSVIDSQARTQEKIFECDISG 356

Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
                +  D   + Q++LNLLSN+VKFT  GG + + +     +         + D G G
Sbjct: 357 IRQERLIGDYLRVNQILLNLLSNSVKFTPRGGMIRLEIKEIEDQKGRTFLQFVVSDTGIG 416

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++E  +  +   F Q    I     G GLG+ I  +++   GG   ++S+L EG      
Sbjct: 417 MSEEFLERLYLPFEQADGQISQKYGGTGLGMAITNNLVELLGGSIDVKSRLGEGTVFTVK 476

Query: 472 LPNTRVLNFIPEDNHE 487
           LP       +PED+ E
Sbjct: 477 LPFD-----LPEDSEE 487


>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
 gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
 gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 720

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +A L+ A S S + +  A + + AKS FLASMSHELRTP+N + G  E+           
Sbjct: 208 LASLKDALSASKKAQAEAIDASKAKSEFLASMSHELRTPMNGLFGMMELAIDNPHKSG-- 265

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+     +G+ LL LIN++LDLS+IEAG+  +  +++ L+ ++ +   +     +
Sbjct: 266 ----EYLKKAKNAGRQLLVLINDVLDLSKIEAGKLRIERTSVDLLQLMDDVTSVQSANCR 321

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRG 400
            K +    +   +L   +  D   + Q++ NLLSNA+KFT   G V + +G         
Sbjct: 322 LKKLAFDYQKQTNLPAYIVGDPTRIAQILHNLLSNAIKFTQQ-GTVTLRIGVFVTEKRHW 380

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I ++D G GI   +  T+   F Q   +      G GLGL IA+ +    GG+  ++S
Sbjct: 381 LTIDVQDTGMGIPPEKTRTIFNKFEQADQSTTRIHGGTGLGLSIAKQLTDLMGGKLTVQS 440

Query: 461 KLREGVEVIAILPNT 475
           K+ +G      +P  
Sbjct: 441 KVDKGSCFTFSVPIE 455


>gi|301052938|ref|YP_003791149.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375107|gb|ADK04011.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 466

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
 gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
          Length = 793

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 16/371 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TL  L+           +  +     A    A +N  L     L      + ++   I S
Sbjct: 138 TLSALMMSSEAVTRQAALVTALAAAHAEQTVAATNQALSRIFVLGLTGTALIMAAALIFS 197

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLS 235
           M           + A       +             +A    L      + E +      
Sbjct: 198 MRKAHAISTATQSAAAKLQRLASGEQSGPPTAKDEIRAVFAALDTLAVSLQEKKRIAERL 257

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + + RAE     KSRFLA+MSHE+RTP+N +LG +EV+    + P            I 
Sbjct: 258 QQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRLTP----EQTSCTSTIL 313

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S + LL ++N+ILD S++EAG+ ++ +   +L D++ +   ++   A  K +EI   I 
Sbjct: 314 ASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEICIDIP 373

Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--YISIKDNGPGI 412
             +      D   +RQ+++NL+ NAVKFT   G + +T+ + +       I ++D G GI
Sbjct: 374 EHTPPEFIGDSGRVRQILMNLVGNAVKFTLE-GHISITLNYDARHNIPLCIDVRDTGVGI 432

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA-- 470
            E  I  +  +F Q         +G GLGL I+  +    GG+  + S+  +G       
Sbjct: 433 PEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAGKGSCFTVCL 492

Query: 471 ILPNTRVLNFI 481
            LP        
Sbjct: 493 TLPVAAPSPAP 503


>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
 gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
 gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|262383486|ref|ZP_06076622.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294384|gb|EEY82316.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 638

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L      + +        ++ + +  F + ++ +  +       QA+K  L+ 
Sbjct: 344 LLPKDAILLNFPFKAQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405
            IE  +K   +   +++D++ + Q + N+L NA+KFT+  G + +   +++  +   + +
Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSADAQDVRLYV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 630 CRISLVF 636


>gi|58581450|ref|YP_200466.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
 gi|58426044|gb|AAW75081.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
          Length = 1210

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 808  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 863

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V +   +++  A++K
Sbjct: 864  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 923

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402
             +     +D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 924  QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 982

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 983  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1042

Query: 462  LREGVEVIAILPNTRV 477
            L +G   +  LP   V
Sbjct: 1043 LGQGACFVVELPLRWV 1058


>gi|116496229|ref|YP_807963.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|239630680|ref|ZP_04673711.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067831|ref|YP_003789854.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|116106379|gb|ABJ71521.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei ATCC 334]
 gi|239526963|gb|EEQ65964.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300440238|gb|ADK20004.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
          Length = 636

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +    ++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1194

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   T     + T + Y   I R+G
Sbjct: 814  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 869

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 870  AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 929

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 930  DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 988

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG+ A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 989  KARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048

Query: 476  RVLN 479
             V +
Sbjct: 1049 WVAS 1052


>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
 gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
 gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180]
 gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|313905267|ref|ZP_07838634.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
 gi|313469878|gb|EFR65213.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
          Length = 1224

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/429 (24%), Positives = 179/429 (41%), Gaps = 47/429 (10%)

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI---------WLLV 112
           +G W  +   F +++L    V A NL L   +++           +            +V
Sbjct: 68  LGWWMVRISNFFVFALTIFIVCAFNLYLSDLLIHEGGLSYPPKRLKAVYIMTGIGEIFVV 127

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYL-TIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
             +  G  +T          +   +  I   A LLI LS+       L   V +S F  +
Sbjct: 128 ANLYTGFYYTFDATNHYSRASGAVVSFIIPIAALLIQLSVIIKYGKRLSRIVRISLFLFI 187

Query: 172 VALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +     +I+   +  +SL  +  +  A+  + ++   L  +       + E         
Sbjct: 188 LVPFAFSILQFFIYGLSLTTISIVGMAILLYIFVLLDLNAAKEAKEEAEYE--------- 238

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                           N AKS FLA+MSHE+RTP+NAILG +E+I  E+    ++   + 
Sbjct: 239 ----------------NRAKSHFLANMSHEIRTPINAILGMNEMILRES----DDPEIQA 278

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I  +G  LL L+N+ILD SRIEAG+ E+      +  ++ + + M+Q RA++K +E
Sbjct: 279 YADSIKLAGNTLLGLVNDILDFSRIEAGKMEILPVDYDVSSLLNDLVNMIQSRAEDKGLE 338

Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR----GQYI 403
           +      ++  +   DE  ++Q I+N+L+NAVK+T  G     V               +
Sbjct: 339 LVLDFAENMPKLLHGDEVRIKQAIMNILTNAVKYTEKGSVTFRVGFERIENDPANVYLLV 398

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI   ++  +   F +         +G GLG+ I +SI+   G    + S   
Sbjct: 399 SVTDTGIGIRPEDLEKLFHEFERIEEKRNRNIEGTGLGMNITRSILEMMGSHLEVSSIYG 458

Query: 464 EGVEVIAIL 472
           EG      L
Sbjct: 459 EGSTFSFRL 467


>gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 140/267 (52%), Gaps = 5/267 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +   + ++  N  K  FLA +SHELR+PLN ILG++ +++       N 
Sbjct: 245 ITERKQIEKEREILYEESQRANRIKDEFLAILSHELRSPLNPILGWASLLKTSKF---NA 301

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +T K  +  I R+      LI ++LD+SRI  G+  L+   + L  I+   + ++QL A+
Sbjct: 302 DTIKHGLEIIERNANLQTRLIEDLLDVSRILRGKLILNTYPVELPSIIASALEIVQLSAK 361

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K+IEI  KID ++ +V AD   ++QVI NLLSNA+KFT  GG+V + +     +   I+
Sbjct: 362 AKSIEIETKIDANVGAVQADPSRLQQVIWNLLSNAIKFTPSGGKVTIYLERI-DKYAQIT 420

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           I D G GI++  +P V   F Q          G+GLGL I   ++  HGG    +S    
Sbjct: 421 ISDTGKGISKEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEG 480

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +G   I  LP     +   ++N  STQ
Sbjct: 481 QGASFIVRLPVIAPQSTTYKENKISTQ 507


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 12/240 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +SRFLA MSHE+RTP+N ++GF++++    +    N    EY+  I RSGQ LL +I++I
Sbjct: 136 QSRFLAMMSHEIRTPMNGVIGFTQLLRDTPL----NPRQMEYVDLITRSGQSLLVIIDDI 191

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S++ AG  +L  +   L  ++ + I +L   A++KNI I   IDP + S +  D   
Sbjct: 192 LDYSKVSAGHLQLERAPCELRRLIEQHIQLLHTGARQKNITIDLHIDPLVPSLIIGDAVR 251

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + Q++ NL+SNA+KFT  GG VH+ +     R   + + D G GI       +   F Q 
Sbjct: 252 IGQIVSNLVSNAIKFTHHGG-VHIHLVPDGPRCLALHVTDTGIGIPPEAHRRIFEPFSQA 310

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFI 481
             +      G GLGLPI + +    GG   + S+   G    A        P TR LN  
Sbjct: 311 DGSTTRRYGGTGLGLPITRLLCTLMGGTLTLSSQPGHGSTFTATFTYELPSPATRPLNSP 370


>gi|67459382|ref|YP_247006.1| histidine kinase sensor protein [Rickettsia felis URRWXCal2]
 gi|67004915|gb|AAY61841.1| Histidine kinase sensor protein [Rickettsia felis URRWXCal2]
          Length = 497

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLETNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++   +I+++
Sbjct: 299 --DAEKNKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|331092424|ref|ZP_08341249.1| hypothetical protein HMPREF9477_01892 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401267|gb|EGG80856.1| hypothetical protein HMPREF9477_01892 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 437

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 134/281 (47%), Gaps = 6/281 (2%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           M+  A     + T  L +   ++   +  ++++  EL+      D+  +  E     +  
Sbjct: 162 MMGIAFLLAKWQTARLIRPINELNLEEPLENEVYEELQPLLEGLDKRNREKEAVAQMRKE 221

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F A++SHEL+TPL +I G++E+++   + P   E  + +   I+     L+ L+ +I+ L
Sbjct: 222 FSANVSHELKTPLTSISGYAEIMKSGLVKP---EDMQNFSERIYTEASRLITLVEDIIKL 278

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+++ G+ EL +  + L  + RE    L L+A++K I+I    +P         + + ++
Sbjct: 279 SKLDEGKVELEKEEVDLFMLCREVCSRLSLQAEKKRIKIEVTGEP--VFYRGIRQILSEM 336

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           I NL  N +K+   GG++ V  G T    + I I+D G GI E +   +   F +   + 
Sbjct: 337 IYNLCENGIKYNVEGGKLTVWAGNTLQGKKVI-IRDTGIGIPEEDRERIFERFYRVDKSH 395

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGL I +     H  +  ++S++ +G  +  + 
Sbjct: 396 SKQSGGTGLGLSIVKHGAMLHQAEVQVKSEVGKGTTMEIVF 436


>gi|282897504|ref|ZP_06305505.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
 gi|281197599|gb|EFA72494.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
          Length = 647

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 155/344 (45%), Gaps = 21/344 (6%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            + L+++++ + +L          +++AL+   + +  ++ + LA +LA  L        
Sbjct: 299 WVILAVASVRDALL---GLDQIKLILIALTVGLVGASLLVSLYLAPLLANPLEELRDYAL 355

Query: 206 HLFKSNVKI-----------LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
           ++   +                     D ++  L+      +   K A+  N  KS+FLA
Sbjct: 356 NIHSHHAVQPIPRNFRIKEFNQLAQALDQMVERLKAWTEELEMAWKEAKSANTVKSQFLA 415

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           + SHELR PLN I+    ++        + E   E++     +  HLL +IN++LD+S+I
Sbjct: 416 NTSHELRNPLNIIINCVRLVRDGLCD--DKEEELEFLKKADDTAIHLLGIINDLLDISKI 473

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+  +    + L  ++ E I +  +  ++K +++  +I   +  +  D   ++QV++N
Sbjct: 474 EAGKLSVVMIPLELRQLLLEVINLQSVNVEKKGLQLKCEILEQIIPIKGDRIKLKQVLIN 533

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++ NA KFT   G + ++             IS+ D G GI   +   +   F     + 
Sbjct: 534 VIGNATKFTEE-GSITISTKTIQQNSKLYVVISVVDTGIGIDPQQQHKLFRPFVMVDGST 592

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
               +G GLGL I+++++   GG+  + S  L  G  V  ILP 
Sbjct: 593 TRKFEGTGLGLAISRNLIELMGGKISLESLGLNRGTTVKIILPL 636


>gi|229029070|ref|ZP_04185169.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
 gi|228732350|gb|EEL83233.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
          Length = 466

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAMTLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|26990435|ref|NP_745860.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985405|gb|AAN69324.1|AE016570_1 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 750

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 153/370 (41%), Gaps = 15/370 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L  +      T     ++    L       +   + L              +        
Sbjct: 135 LGAVHHRLYATGLASLLWMGVFLCGLAVALSGLFYRLVTRHLQVMAEFARRIGAGQWQEP 194

Query: 183 HVLDISLAG-------MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             L    +        +          I   + +     L  Q ++D+L A +E   +  
Sbjct: 195 LRLGRRRSSRPDEIDTVANALDDMRRAILSDIERRERDRLELQDKRDELQAMVERRTASL 254

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +  AE  NLAKSRFLA+MSHELRTPLN ILG +E++    +   +    ++ +  ++
Sbjct: 255 ARAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRGGRLEVAD----RQRVEALY 310

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           ++G+ LL ++NE+L  +R+E G         SL  + +E + +L+  A E    +  ++D
Sbjct: 311 KAGEGLLAILNEVLYFARLEEGESRAERVVFSLRQLCQEVLALLEPMAMENADTLQLQVD 370

Query: 356 PSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPG 411
             L++  +  E+ +RQV+ NLL+NA+KFT  G     V V       +   +S++DNG G
Sbjct: 371 EQLAAYQYGAEQYLRQVLSNLLANAIKFTEHGQVQLTVQVLANNECSQRLRLSVRDNGIG 430

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I       +   F Q S A+     G GLGL I + ++   GG   + S   +G      
Sbjct: 431 IEPAVQAKIFDRFVQASEAVTQRYGGTGLGLAICKHLVEKLGGSIGLESVQGQGSCFWFE 490

Query: 472 LPNTRVLNFI 481
           L   R     
Sbjct: 491 LDMARGQPVS 500


>gi|125974566|ref|YP_001038476.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714791|gb|ABN53283.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 387

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 147/350 (42%), Gaps = 22/350 (6%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              +  S    + ++     +FM           +    +    +   ++  ++  +   
Sbjct: 11  TRIVIYSVLAHLVIAGVGFISFMC--------KLIDETHADNCFLLGMLMAQNIFVLFLE 62

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE----------- 244
            L     ++  +  +N K+    +E    I  L+       E +                
Sbjct: 63  ILIVVAIMSV-IVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIK 121

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLN 303
            +  KS F  +MSHEL+TPL+ ILG  ++I  +  +   +      ++  I ++   LL 
Sbjct: 122 SSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLR 181

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN ILD+SRI++G  + +    +++ +V +    +    ++K + +             
Sbjct: 182 LINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAV 241

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + ++ILNLLSNAVKFT  GG++ V V         I +KD G GI +     +   
Sbjct: 242 DVDKIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFER 300

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + Q    + +  +G G+GL I +S +A H G   +RSK  +G E I  LP
Sbjct: 301 YRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 350


>gi|295400058|ref|ZP_06810038.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977837|gb|EFG53435.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 468

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 7/325 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            +I           +      + + L+   +  + +    L   +   L     + YH+ 
Sbjct: 147 GAIYLYIPLASIQELTKEVAMIWLPLAALFVFVLLIAGKRLVRHITGPLKEMEEVAYHMS 206

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + N +        D++    ++AK+ +   +  AEE ++ K  FLA++SHELRTP++ + 
Sbjct: 207 QGNYEAQIPVRTNDEI---GKLAKAFNIMAKAVAEE-DMRKREFLANVSHELRTPISYVK 262

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I    +     E  ++++  I+R    +  L+ ++LDL+++E     L +  +  
Sbjct: 263 GYSEAILQGLV--KTKEEQRKHVQLIYREAGRMERLVRDLLDLAQLEGNSVPLQKVPLVF 320

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             ++ + +   +   Q+K I +  ++D  +  +  D   + QV+ NLL NAV++T   G+
Sbjct: 321 AQVIEDTVAKYEPFLQKKQITLAVELDHDII-LEGDADRLEQVVQNLLDNAVRYTPDAGK 379

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + +   S +   + I+D+G G+ + ++  +   F +   A    E G GLGL I + I
Sbjct: 380 IDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQRFFRVDQARSRKEGGTGLGLAIVKQI 439

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           ++ H G     S+  +G+EV+  LP
Sbjct: 440 ISLHDGTISFFSEEGKGMEVVIELP 464


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 6/246 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A       +K  EE    ++ F++ +SHELRTP++ I GF+E +     G    E Y+E 
Sbjct: 278 ANVRDITAQKMEEE---RQNTFISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQYREA 333

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I      L   I ++LD+SRI AG   L  S ++L  +V + +     +  E  IE 
Sbjct: 334 LQVISEEADRLARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGE-RIEF 392

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             ++   L  V+AD + MRQV+ NL+ NAVK++  GG + +      G    + + D G 
Sbjct: 393 EIRVPDDLPPVYADYERMRQVLTNLIENAVKYSPNGGVIRIGA-RAEGDMAIVYVSDQGI 451

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   E   +   F +    ++  + G GLGL I ++I+  HGG+  + S++  G     
Sbjct: 452 GIPPEEQDLIFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFF 511

Query: 471 ILPNTR 476
            +P +R
Sbjct: 512 TIPLSR 517


>gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 820

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 15/275 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  E   A  +        +E +  K+ F++++SHELRTPL ++LGF+++I  +    +
Sbjct: 335 RLAGEERRATIILVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLV 394

Query: 283 NN-------------ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
                          +  +E +  I   GQ L  L++++LD++++E+GR E + + +SL 
Sbjct: 395 APALTEATPKTWRGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLA 454

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +     +  +   A  K I +  K+  +L  +  D   + QV +NLL NAVKFT   G +
Sbjct: 455 ETAGHAVRAVAGLAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFT-EHGAI 513

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V  G   G    ++++D+G GIA  ++  +   F Q    +    +G GLGLPI + I+
Sbjct: 514 VVE-GSVDGSEIRVAVRDSGSGIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQII 572

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             HGG+    S+  +G      LP        P  
Sbjct: 573 ERHGGRIWAESEPGQGSVFRFTLPILAEAADTPAA 607


>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
 gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
          Length = 1129

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 170/360 (47%), Gaps = 15/360 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  + +  +    Y+ +     L+I   +  +           +F PV  A +  +++  
Sbjct: 560 VWMVAQLNSRIGHYIGVLSLLALVIGAILGVI-------YFQATFAPVAEAEAVGSVL-- 610

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             L   L  +   A   F         +  +     A     I   +   +   + ++ A
Sbjct: 611 FTLYFILLIIAGVAAWLFVLAQESRRVAQEESNRQTALLMREIEAHKRTDAKLQKAKEAA 670

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  NLAKSR++  +SHELRTPLNAILG+++++E +T  P      ++ I  + RS +HL 
Sbjct: 671 EAANLAKSRYVVGISHELRTPLNAILGYAQLLERDTSIP---PHRRDAIRVVRRSAEHLS 727

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            LI+ +LD+S+IEAGR  L+   + + D + + + M +L+A  K I+        L   V
Sbjct: 728 GLIDGLLDISKIEAGRLHLTRDEVRIADFLDQLVDMFRLQATAKGIDFVYVRPDRLPAVV 787

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + DEK +RQV++NLLSNA+KFT   GRV + V +   +     ++D+G GI   +   + 
Sbjct: 788 YTDEKRLRQVLINLLSNAIKFTDR-GRVALRVSYR-NQVAEFEVEDSGIGIPAADHRRIF 845

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F +G  A   +  G+GLGL I + +    GG+  + S   EG      L  + V N  
Sbjct: 846 EPFERGERAGTYSTAGIGLGLTITKLLTEIMGGEISLTSTPGEGSSFKVKLMLSEVTNPS 905


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 7/254 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I E +  +    E ++RAEE    KS  L+++SHE+RTPL  ++GF+EV+E E    
Sbjct: 424 LRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVIGFAEVLEEEL--- 480

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E ++E    I  SG+ LL  +N +LDL+RIEAG + L+       D VR+ + + Q 
Sbjct: 481 --DEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFDAADEVRQSVRIFQR 538

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
              +K + +   +  +   V+ D  G  ++++NL+SNAVKFT   G + V +    G   
Sbjct: 539 MIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDE-GMIRVGLAA-EGDWL 596

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G GI    +P +   F Q +  +     G GLGL I   ++   GG+  ++S+
Sbjct: 597 RLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSE 656

Query: 462 LREGVEVIAILPNT 475
             +G      LP  
Sbjct: 657 KGKGTTFTVWLPLR 670


>gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
 gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
          Length = 880

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  EE   AK +F  ++SHELRTPL  I    E I             +  +  + R+ 
Sbjct: 362 RRMEEEATNAKLQFFTNISHELRTPLTLIADPVEHIID---DENLTRQQRTMLQIVRRNV 418

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L+ EILD  +I+ G+  L+ S  +L D +++ I +    A++K I +  +    +
Sbjct: 419 NILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALELECSDDI 478

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   + ++  NLLSNAVKFT  GGR+ +    T G    I + D G GIA+ E+ 
Sbjct: 479 -RMRADIYKVERICYNLLSNAVKFTQEGGRITLKAA-TDGDKVSICVTDTGMGIAKDELS 536

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F Q   +      G G+GL I +S    H G  ++ S+  +G      LP 
Sbjct: 537 RIFERFYQVKDSY---GGGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVTLPL 589


>gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
 gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 158/376 (42%), Gaps = 10/376 (2%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
           G  W L+  +           +       +LIA+ +  +S+  L    F++   + +  +
Sbjct: 332 GQTWALVVQLPEKEAFARIHQLEKLFVIAMLIAIVLVFISSHYLSN--FITSPLLKLTWA 389

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S    +     ++   AELE    L 
Sbjct: 390 AERVSAGDLDENMINTERKDEIGRLAISFERMQRSIRDKIQLIKTQN---AELEKNLQLI 446

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  +  K  FLA+ SHELRTPL+ ++G +E +     GPL +   +  +  I 
Sbjct: 447 QKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPS-NQRYQLDIII 505

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +SGQ L  L++++LD  ++  G  ++ +SA++L    R  + +       K + I  ++ 
Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             ++ V AD + + QV+ NL+ NA+K+T   G++ ++          + + D G GI   
Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISANVV-DDKVRVQVVDTGQGIPAE 623

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 624 QLEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLA 683

Query: 476 RVLNFIPEDNHESTQY 491
                   +  ++  +
Sbjct: 684 SADEISATEVMQNQHH 699


>gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
 gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
          Length = 641

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 137/269 (50%), Gaps = 11/269 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +  +     +++ A +    K  FLA+MSHELRTPLN I+G + +++   +     E
Sbjct: 245 TLQKQYEEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQTEL----EE 300

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K+ +  +  S Q LL ++N+ILDLS+I+AG++ LS+  +++  I++  I +++ +A E
Sbjct: 301 AQKQMVKLLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSIELMRTKANE 360

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI- 403
           K +++  +IDP L   +  D   + Q+++NL+SNA+KFT   G V + V   S  G YI 
Sbjct: 361 KLLDLNLEIDPRLPKYIETDPLRLNQILMNLISNAIKFTEK-GYVSLRVNQLSHEGDYIT 419

Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +KD G GI       +  S+ Q          G GLGL I + ++    G+    S
Sbjct: 420 VKFEVKDTGIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVELQNGKIDFNS 479

Query: 461 KLREGVEVIAILPNTRVLN-FIPEDNHES 488
           +  +G      L    + N   P +N E 
Sbjct: 480 EYGKGSNFWFELTFRAINNYSTPAENIEE 508


>gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 403

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 1/229 (0%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  +S F++ +SHELRTPLN++ GF E++    MG LN+E  + Y+G      Q L+++
Sbjct: 162 ANQVRSNFVSMVSHELRTPLNSVHGFIELLWQGHMGELNDE-QRLYLGYAQEGVQQLISI 220

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + +IL ++R + G++E  +  + L+++VR     LQ +A +  + +  +I P    ++ D
Sbjct: 221 VEDILFMTRSDLGQFETKQQGVQLLELVRLVTQSLQPQAVKAGVALVLEIVPETPLLYVD 280

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + ++QV+ NL+SNA+K+T  GG V +T      R Q IS+ D G GI   + P +   F
Sbjct: 281 PQRIKQVLNNLISNAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRPHIFERF 340

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q + + +S   G GLGL IA+ I+  HGG     + + +G      LP
Sbjct: 341 YQSNHSQQSKMGGYGLGLSIARLIVEQHGGTISFDTVVGKGSSFYFTLP 389


>gi|288918897|ref|ZP_06413241.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288349749|gb|EFC83982.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1412

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 31/350 (8%)

Query: 145  LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +L  + +++ + F   +   +      + +    IM+    +  LA            +T
Sbjct: 787  VLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQ--------RLT 838

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMS 257
              L   +V++     E ++  A LE   +  D  R    ++AE+    +  KS FLA+MS
Sbjct: 839  QELRSQSVELQRTNNELEEKAALLEEKNTEIDMARIGLEEKAEQLALSSQYKSEFLANMS 898

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN++L  ++++       L+ +   ++   IH +G  LL LIN+ILDLS++EAG
Sbjct: 899  HELRTPLNSLLILAKLLADNPDHNLS-QKQIDFAETIHSAGSELLGLINDILDLSKVEAG 957

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            +  +    +    +      +    A+EK +     +   +      DE+ ++QV+ NLL
Sbjct: 958  KMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISVTSDVPEEFVTDEQRIQQVLKNLL 1017

Query: 377  SNAVKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTS 423
            SNAVKFT   G V + V   S    +              ++ D G G+A  ++  +  +
Sbjct: 1018 SNAVKFTDS-GTVRLDVSVASPDTPFVAPSLRSAPMVLSFAVSDTGIGVAAEKLRMIFEA 1076

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q          G GLGL I++ I    GG   + S++ +G      +P
Sbjct: 1077 FQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVP 1126


>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
 gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|312110692|ref|YP_003989008.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311215793|gb|ADP74397.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 468

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 154/325 (47%), Gaps = 7/325 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            +I           +      + + L+   +  + +    L   +   L     + YH+ 
Sbjct: 147 GAIYLYIPLASIQELTKEVAMIWLPLAALFVFVLLIAGKRLVRHITGPLKEMEEVAYHMS 206

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + N +        D++    ++AK+ +   +  AEE ++ K  FLA++SHELRTP++ + 
Sbjct: 207 QGNYEAQIPVRTNDEI---GKLAKAFNIMAKAVAEE-DMRKREFLANVSHELRTPISYVK 262

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I    +     E  ++++  I+R    +  L+ ++LDL+++E     L +  +  
Sbjct: 263 GYSEAILQGLV--KTKEEQRKHVQLIYREAGRMERLVRDLLDLAQLEGNSVPLQKVPLVF 320

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             ++ + +   +   Q+K I +  ++D  +  +  D   + QV+ NLL NAV++T   G+
Sbjct: 321 AQVIEDTVAKYEPFLQKKQITLAVELDHDII-LEGDADRLEQVVQNLLDNAVRYTPDAGK 379

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + +   S +   + I+D+G G+ + ++  +   F +   A    E G GLGL I + I
Sbjct: 380 IDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQRFFRVDQARSRKEGGTGLGLAIVKQI 439

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           ++ H G     S+  +G++V+  LP
Sbjct: 440 ISLHDGTISFFSEEGKGMKVVIELP 464


>gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 611

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +L +  F+A++SHELRTPL  +  + E +        ++E    ++       + ++
Sbjct: 372 EKIDLERREFVANVSHELRTPLTTMRSYLEALADGAW--QDDEIAPRFLDVTQTETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y   ++++  ++   + I   +  ++ + ++  + +      V 
Sbjct: 430 RLVNDLLQLSKMDSRDYNFYKNSVDFVEFFNKIIERFE-MSKSQKVDFVRSMPNQEVFVS 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421
            D   + QV+ N++SNA+K++  GG +  TV    +     +SI D G GI + ++  + 
Sbjct: 489 IDTDKITQVLDNIISNAMKYSPEGGTITFTVDIEEAANQILVSISDQGVGIPKSDLNKIF 548

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   A      G GLGL IA+ ++  H G     S   +G  +   LP +     
Sbjct: 549 ERFYRVDKARTRMLGGTGLGLAIAKEMIQAHDGDIWASSVEGKGTTIYFTLPISEEEQE 607


>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
 gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 970

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/471 (20%), Positives = 176/471 (37%), Gaps = 31/471 (6%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D L             +I    + L        +  +L+ +             W+L+  
Sbjct: 254 DRLFASATI-PQLGWVVIQTLPKDLVHSPVNRLVVQVLIFSFLILI------AAWTLLAA 306

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            V    L LG    + D  +     +    + G   IG        +             
Sbjct: 307 VVARLLLPLGLAASSIDAMVDNRAAFTPLPIAGNDEIGQLVQAFNRLLLSRDEQRQRLFL 366

Query: 141 KSATLLIALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSM----------HVLD 186
            ++ + I +    +S   + +           P   A + +   S            +L 
Sbjct: 367 ATSGVGIGIWDYDMSAGTMTWDEQMFALYGATPGEEADAQRIWESRVHPDDLESVNQLLH 426

Query: 187 ISLAGMLATALSFFTYITY---HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            +L G    +  F   +        K+N  +L    +  + +  +     +S++ R    
Sbjct: 427 SALQGESFFSAEFRIVLPDGNIRWIKANAVVLRADGDGGEPLRVIGTNWDISEQKRVEL- 485

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                KS+F++++SHELRTPL +I G   +I    +G L +   ++ +   +++ Q L  
Sbjct: 486 ----MKSQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPS-QARQLVDIAYKNSQRLGY 540

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+ +I AG+         L+ IV + +   +   ++ N+            V  
Sbjct: 541 LINDLLDMEKIAAGKMRFDMILQELMPIVEQAMEANEAYGRQFNVTFALVERDDSMLVRV 600

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + QV+ NLLSNA KF+A   RV + V         + ++D GPGI+      + T 
Sbjct: 601 DAQRLMQVLSNLLSNAAKFSASAERVEIAV-MAQNNQVRVEVRDQGPGISPELQARLFTK 659

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +    + G GLGL IA+ ++   GG   + S++  G      LP 
Sbjct: 660 FTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHSEVGRGSVFFFELPA 710


>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sonnei Ss046]
 gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
 gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
 gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
 gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
 gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
 gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RcsD [Escherichia coli W]
 gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
 gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
 gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
 gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357]
 gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           KO11]
 gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
 gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
 gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 576

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAHAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VIEGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL + + +   HGG   + S    G   +  LP   
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565


>gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. W3110]
 gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K12 substr. W3110]
          Length = 807

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 775

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 10/238 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE E+ AKS FLA MSHE+RTP+N +LG + ++    +    +   +E +  I  SG 
Sbjct: 361 EKAEAESRAKSDFLAVMSHEIRTPMNGVLGLASMLLETRL----DPEQREAVATIRESGD 416

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +L  ++N+ILDLS++EAGR+       +   +V     +++  A+ K + +  ++DP+L 
Sbjct: 417 NLQRILNDILDLSKLEAGRFAFEAIDFAPHALVETVATVVRASAKSKGLTVKVELDPNLP 476

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAE 414
            ++  D   +RQV+LNL SNAVKFT   G V ++               ++KD+G GIA 
Sbjct: 477 PTLRGDVARIRQVLLNLASNAVKFTDE-GEVTISATCQTRRDLLATVEWTVKDSGIGIAP 535

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++  + + F Q   +I     G GLGL I++ I+   GG   + S   EG      L
Sbjct: 536 EKLGLLFSDFAQADASISRRFGGTGLGLAISRRIIEQMGGTIGVTSTPGEGSTFRFTL 593



 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 6/192 (3%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPMWSLITLAVYAANLSLGK 91
            I    ++++ R+ P+     +L   I               +W L   A  +  +   +
Sbjct: 45  RIRAKQIDAVTRLIPVTMAVTMLNVAIVLILFWGRGWNDFLAIWGLTLAATASLAVRSWR 104

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +   +  +       R  +L     +   W  L L       P    I     + + +S 
Sbjct: 105 RSYRNPPQEASPRAARH-MLRQAFFLAAIWGTLPLALFSHIEPTSQLILACLMVGM-MSG 162

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            A +    P A  +    + V  +   ++      +  AG L     F            
Sbjct: 163 GAFTLSTFPRAGLVYLATMTVGCAGALLLCGAGPYLVTAGFLLLFAFFMARNIVSQGNLF 222

Query: 212 VKILSCQAEKDD 223
           +  L  Q E + 
Sbjct: 223 LGNLKAQLELER 234


>gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 875

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 9/261 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E   ++ +  E    AE+ N+AKS FL+ MSHE+RTPLNAI+G + +       P    
Sbjct: 337 TEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAIIGMTTIAAAVVRDP---A 393

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ +  I  S +HLL LIN++LD+S+IE+    L +    + +I+   +  +  + + 
Sbjct: 394 RVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDMFEIINGFVSTVYAQTKA 453

Query: 346 KNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
           K IE  + ++     +    D   + Q++ NL SNAVKFT  GG++ + V    G     
Sbjct: 454 KGIEFQETMEGFGEDAIFIGDSLRLNQILFNLSSNAVKFTPPGGKIRLEVSRYRGRNTAD 513

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G G+ +  +  V   F Q   +I     G GLG+ I ++++   GG   + 
Sbjct: 514 MIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGMSITRNLITLMGGCIRVD 573

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S+   G   I  LP  +    
Sbjct: 574 SEPGVGTACIVELPFLKGEES 594


>gi|254444308|ref|ZP_05057784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258616|gb|EDY82924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 612

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                L +   K+    ++       L    +        A     AK RFLA+MSHE+R
Sbjct: 174 RTRELLNELENKVARRTSQLTKANKSLNSLNAELQVAVDEARAAERAKGRFLATMSHEIR 233

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           T LN I+G S ++   +  P ++   KE+ G I +SG  L+ +IN+ILD S+ E+G+ EL
Sbjct: 234 TTLNGIIGASHMLNHSSSLPESD---KEFAGIIQKSGDALMIIINDILDYSKYESGQLEL 290

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
            ++  SL D+ +EC  ++       NI +  + DP L   V  D   +RQV+LNLL+NA 
Sbjct: 291 EQTPFSLKDLAKECTNLMDTSLANHNITLEVEFDPKLPQLVVGDPARIRQVVLNLLNNAF 350

Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KF   G   + +             I I+D G G+    +  + ++F Q   +      G
Sbjct: 351 KFGRDGTVTLAIKAESVKNDSVVLRIEIRDQGIGMTPDTLERLFSAFMQADSSTTREYGG 410

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            GLGL I + +      +  + S+L EG     IL        +PE++ +    
Sbjct: 411 TGLGLAICKLLADAMAARIDVSSELGEGSVFAFILELA-----LPEEDAKPADI 459


>gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 575

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           A  L F          +  K  S  +E  +   E +     + + ++RAE    A   F+
Sbjct: 158 AIQLIFTASPNTMWRDTIEKQFSLISEMINAAFERKYLFDKTLKEKRRAENSERATRDFV 217

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A ++HELRTPLN +LG +E++E   +    N    + +  IH+SGQ L  +IN++LD S+
Sbjct: 218 AMINHELRTPLNGLLGSAELMEDTQITDYQN----KLLETIHQSGQMLRIIINDLLDFSK 273

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           + AG  EL  +      +V+    +   +  EK +     I  +L   +  D   ++Q++
Sbjct: 274 MSAGMLELKVANFKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLPQSLMGDIDRVQQIL 333

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NL+ NA KFT   G + + VGW       I + D G GI + +   +   F Q   + +
Sbjct: 334 VNLVGNAFKFT-KSGHISLKVGWQENALVLI-VSDTGCGIPQDKQKLLFEPFTQVDNSSQ 391

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              +G GLGL I + ++    G+   +S+L EG E    LP   V   
Sbjct: 392 RQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKLPLEVVSEQ 439


>gi|118474424|ref|YP_892424.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413650|gb|ABK82070.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1016

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             +  A  L    ++ A + N +KS FLA++SHE+RTPLN I+GF+++++   +     +
Sbjct: 364 DMIAKALELITTQKQAAIDANRSKSAFLANISHEIRTPLNGIIGFTDLLKNSNL----KK 419

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KE +G I +S ++LL +IN ILD+S+IE+ + EL     S I      + +   +A E
Sbjct: 420 QEKELVGVIEQSSENLLRIINNILDISKIESRKVELDNEVFSPIKEFSSAVELYSQKAYE 479

Query: 346 KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K+IE    IDPSL   +  D   ++QV++NL+ NA+KFT   G++ V +           
Sbjct: 480 KDIEFICYIDPSLNKHLEGDYFKVKQVLINLIGNAIKFTPQNGQIIVDITKLDENEDGKT 539

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KDNG GI +  +  +  SF Q +  I     G GLGL I+   +        ++
Sbjct: 540 TIKFSVKDNGIGIDKNMLEKIFDSFIQANKDITKIYGGTGLGLSISNEYIKMMDSIIKVK 599

Query: 460 SKLREGVEVIAIL 472
           S+L EG E   ++
Sbjct: 600 SELGEGSEFSFVI 612


>gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 1068

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 12/258 (4%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 351 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL-NER 409

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y G IH+SG+HL++++N+ILDL+R+E G+ EL+ S + + ++    ++  +    + 
Sbjct: 410 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVEARSVHNQT 469

Query: 347 N--------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                     E    I+P L  + ADE  +RQ++++LL NA KFT   G+V + V     
Sbjct: 470 GRKGESLPSHEFSLSIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNRWE- 528

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GI + +   +   F Q    +    +G GLGL + +++   HGG    
Sbjct: 529 GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGDVSF 588

Query: 459 RSKLREGVEVIAILPNTR 476
            S+  +G +   +LP + 
Sbjct: 589 LSREGKGSQFTLLLPPSP 606


>gi|157827614|ref|YP_001496678.1| histidine kinase sensor protein [Rickettsia bellii OSU 85-389]
 gi|157802918|gb|ABV79641.1| Histidine kinase sensor protein [Rickettsia bellii OSU 85-389]
          Length = 498

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 146/253 (57%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E  V          + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 242 ARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-- 299

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  + YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  +V   +I+++
Sbjct: 300 --DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVK 357

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  +E+  K       + AD K ++QV LNLLSNAVKFT  GG V +T+      +
Sbjct: 358 PRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAK 417

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 418 LVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 477

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +I   
Sbjct: 478 SKINEGTTIILTF 490


>gi|91205043|ref|YP_537398.1| histidine kinase sensor protein [Rickettsia bellii RML369-C]
 gi|91068587|gb|ABE04309.1| Histidine kinase sensor protein [Rickettsia bellii RML369-C]
          Length = 498

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 146/253 (57%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E  V          + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 242 ARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-- 299

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  + YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  +V   +I+++
Sbjct: 300 --DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVK 357

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  +E+  K       + AD K ++QV LNLLSNAVKFT  GG V +T+      +
Sbjct: 358 PRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAK 417

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 418 LVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 477

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +I   
Sbjct: 478 SKINEGTTIILTF 490


>gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 484

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 14/272 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I+   ++   K +      D  +  +E+A  +++  RK  E     K   ++++SHE+ T
Sbjct: 225 ISSRWYQCIDKAIRW---TDGRMVRMEIAIDITE--RKEME---RMKDEMISAVSHEMHT 276

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL A++GF+E +       ++ +  K Y+  I+R  + L  LI   L L R++A   +  
Sbjct: 277 PLTAMMGFTEFLLEN---EVDRDLQKNYLKTIYRETERLNELITNFLQLQRLKASMVKFR 333

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
            + +++  +V + + +    A  K   I  +  P L  V  +E+ + Q I NL+SNA+K+
Sbjct: 334 ITPVAVGLLVADVVSLYA--AASKKHRIVVECPPDLPPVRGNEEQLYQAISNLVSNAIKY 391

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           +  GG V +     +     + ++D G GI+      +   F +   + +    G GLGL
Sbjct: 392 SPDGGDVTIGASAAAD-IVTLWVRDQGIGISPEFQEKIFERFFRVDNSDRRKVGGAGLGL 450

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + + I+A HGG+  + S   +G      LP 
Sbjct: 451 TLVREIVATHGGRSWVESSPGKGSTFFISLPA 482


>gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 239

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 11  LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 68

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + EL  + ++L ++    I  LQ +A  K I+I  +I+  +  +
Sbjct: 69  ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 126

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ +++   +V V V   +    Y+ I+D G GI+E +   + 
Sbjct: 127 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 185

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  ++S   +G     + 
Sbjct: 186 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVLF 236


>gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 791

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  K  F++++SHELRTPL ++     +I    +     E  K+ +     + + L++
Sbjct: 557 ALDKMKDEFISTVSHELRTPLTSMRASLGLIASGALASR-PEKQKQMLEIAIGNTERLVS 615

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N+IL+L RI +G+ EL  +  S  D+ R    +L   A +  I+     +    +VW 
Sbjct: 616 LVNDILELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEI--EARGVNVWG 673

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q I NLLSNA+KF+  GG++ +     SG    I + D+G GI   ++ ++   
Sbjct: 674 DPDRILQTITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFER 733

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F Q   +   A  G GLGL I +SI++ HGG     SK   G      LP   
Sbjct: 734 FQQVDASDSRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLPTKP 786


>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 933

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|298376092|ref|ZP_06986048.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267129|gb|EFI08786.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 638

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L        +        +L + +  F + ++ +  +       QA+K  L+ 
Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIILVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405
            IE  +K   +   +++D++ + Q + N+L NA+KFT+  G + +   + +  +   + +
Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYPADAQDVRLYV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 629

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 630 CRISLVF 636


>gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
 gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
          Length = 857

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 16/299 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++   +    N+  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375
           G++ + ++   L ++V     + +    EK +E+    +  + + V +D+  + Q++ NL
Sbjct: 544 GKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G + V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHESTQ 490
               G GLGL I  S++    GQ  + S+   G      LP   V     P+    +  
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPD 721


>gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1080

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 142/342 (41%), Gaps = 13/342 (3%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +++   L   L++  +    L  +V ++    +  ++ +     +    +  G   
Sbjct: 155 FQQAVWRYTLLAGILAVGLML---LVRSVLIAPLGRLGGVARRVTSEENFALRAPKGADD 211

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                       L +   +      ++  L  E+    +     R+RAE E+ A + FLA
Sbjct: 212 EIGELVDSFNAMLERIEQRNRLLGEQRRRLEMEVSERTAEFVGARERAERESKAMADFLA 271

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +++HE+RTP+  I+G  ++     +        +E++  +  S   LL++IN +LD SRI
Sbjct: 272 AITHEVRTPMTGIIGLLDISLRGQL----EPRLREHLEIVRSSSHALLDVINGVLDFSRI 327

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+  +     +L + V + + + +    E+++ +   +   L   V  D   +RQV++
Sbjct: 328 EAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQVLV 387

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           N++ NA KFT   G + V +              +++D G GI       +   F Q   
Sbjct: 388 NIVGNAFKFTEQ-GEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQADA 446

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++     G GLGL IA+ ++   GG   + S    G      
Sbjct: 447 SVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFT 488


>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia sp. 4_1_40B]
 gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
           synthesis regulator component C
 gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
 gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
 gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
 gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|316941685|gb|ADU75719.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 387

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 23/347 (6%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I +    +   +L + V      +      + I   H  + SL GML     F  ++   
Sbjct: 7   IGVCTRIVIYSVLAHLVIAGVGFISFM--CKLIDETHADNCSLLGMLMAQNIFVLFLEIL 64

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS--LSDETRKRAEEENLA---------------- 248
           +  + + ++    +K   I+    A    L  + ++  EE+N                  
Sbjct: 65  IVVAIMSVIVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIKSSS 124

Query: 249 -KSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            KS F  +MSHEL+TPL+ ILG  ++I  +  +   +      ++  I ++   LL LIN
Sbjct: 125 QKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLRLIN 184

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ILD+SRI++G  + +    +++ +V +    +    ++K + +             D  
Sbjct: 185 NILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAVDVD 244

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + ++ILNLLSNAVKFT  GG++ V V         I +KD G GI +     +   + Q
Sbjct: 245 KIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFERYRQ 303

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               + +  +G G+GL I +S +A H G   +RSK  +G E I  LP
Sbjct: 304 VKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 350


>gi|256004073|ref|ZP_05429058.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281419091|ref|ZP_06250108.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|255991996|gb|EEU02093.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281407240|gb|EFB37501.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 430

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 23/347 (6%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I +    +   +L + V      +      + I   H  + SL GML     F  ++   
Sbjct: 50  IGVCTRIVIYSVLAHLVIAGVGFISFM--CKLIDETHADNCSLLGMLMAQNIFVLFLEIL 107

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS--LSDETRKRAEEENLA---------------- 248
           +  + + ++    +K   I+    A    L  + ++  EE+N                  
Sbjct: 108 IVVAIMSVIVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIKSSS 167

Query: 249 -KSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            KS F  +MSHEL+TPL+ ILG  ++I  +  +   +      ++  I ++   LL LIN
Sbjct: 168 QKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLRLIN 227

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ILD+SRI++G  + +    +++ +V +    +    ++K + +             D  
Sbjct: 228 NILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAVDVD 287

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + ++ILNLLSNAVKFT  GG++ V V         I +KD G GI +     +   + Q
Sbjct: 288 KIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFERYRQ 346

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               + +  +G G+GL I +S +A H G   +RSK  +G E I  LP
Sbjct: 347 VKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 393


>gi|153811917|ref|ZP_01964585.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
 gi|149832051|gb|EDM87136.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
          Length = 674

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 8/247 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            + +AE  N AKS FL +MSH++RTP+NAI+G++E+           E    Y+  I   
Sbjct: 287 AKLKAECANKAKSSFLFNMSHDIRTPMNAIIGYAELASRHL---QETEKLGRYLEKIQIC 343

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ LL+++  +LDL+RIE  + E+  +  ++ +    CIIM Q +A+ KN  +       
Sbjct: 344 GKELLSMLGNVLDLARIENNKVEMEYTVSNVHECFENCIIMFQQQAESKNQTLSLTEQIM 403

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYISIKDNGPGI 412
              V+ D   + +V LN++SNA+K+T  GG +       +          I+I DNG G+
Sbjct: 404 YPYVYMDAPHLSEVCLNIISNAIKYTNTGGAISCNVVQKSCEKEDWCNMIITITDNGIGM 463

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +E     +   F +      S   G G+G+ I + ++    G   + SK  EG      +
Sbjct: 464 SEEFQKRIFEIFERERNTTLSHIDGSGIGMGITKKLVELMDGTIEVESKQGEGSTFTVTI 523

Query: 473 PNTRVLN 479
           P  +   
Sbjct: 524 PCRKASE 530


>gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
 gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
          Length = 589

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +  +    + L  L
Sbjct: 358 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 415

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    +  ++ +     +++++E  + +    +        D
Sbjct: 416 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYD 475

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +++         ++I D G GIA   +  V   F
Sbjct: 476 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 534

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   A K  +QG GLGL I + I+  HGG+  + S+L +G   I  LP ++ ++
Sbjct: 535 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 589


>gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144]
 gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045]
 gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028]
          Length = 588

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +  +    + L  L
Sbjct: 357 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 414

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    +  ++ +     +++++E  + +    +        D
Sbjct: 415 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYD 474

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +++         ++I D G GIA   +  V   F
Sbjct: 475 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 533

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   A K  +QG GLGL I + I+  HGG+  + S+L +G   I  LP ++ ++
Sbjct: 534 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 588


>gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 590

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 10/245 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTPL+ + G++E +  +     + +  +E    IH     +  
Sbjct: 350 RLDRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMRRELTEIIHDETLRMKR 407

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-EKNIEIFQKIDPSLSSVW 362
           L+N++L+L+++E+G+++L  + + L  ++R      Q  A  E ++     I      V 
Sbjct: 408 LVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVD 467

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV  NLL NA + TA  G +   +        Y+ + D G GI E ++P +  
Sbjct: 468 GDEDRLEQVFTNLLDNAFRHTAT-GTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A   +  G GLGL IA+ ++  H G+ L+ S+L EG     +LP        P
Sbjct: 526 RFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLPLA-----SP 580

Query: 483 EDNHE 487
            D+ E
Sbjct: 581 NDDGE 585


>gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 698

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 7/229 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS+FLA M+HE+R+P+NA+LG  ++++   +        +  +G    S + L  +I
Sbjct: 331 NRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHAQL----EPQQQTLLGHATHSARLLQTII 386

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWAD 364
           +++LD S+IE+   E     +    + +  I  LQ RA  K I +   +D +    +  D
Sbjct: 387 DDVLDFSKIESHTLEFHCETLHPTQLCQSLIEPLQARASSKGIILRWLVDEAVPPQLQGD 446

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QVI NLL NAVKFT+  G V + +GW   R   +S+ D G GI+  +   +   F
Sbjct: 447 PVRLSQVISNLLGNAVKFTSQ-GSVSLQLGWRHER-LRVSVTDTGIGISAEDQALLFEPF 504

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q   +      G GLGL I++ ++   GG+  ++S   +G      LP
Sbjct: 505 SQVDSSATRRFSGTGLGLAISKRLVELMGGEIRLQSAPGQGSCFWFELP 553


>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 158/376 (42%), Gaps = 10/376 (2%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
           G  W L+  +           +       +LIA+ +  +S+  L    F++   + +  +
Sbjct: 332 GQTWALVVQLPEKEAFARIHQLEKLFVIAMLIAIVLVFISSHYLSN--FITSPLLKLTWA 389

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S    +     ++   AELE    L 
Sbjct: 390 AERVSAGDLDENMINTERKDEIGRLAISFERMQRSIRDKIQLIKTQN---AELEKNLQLI 446

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  +  K  FLA+ SHELRTPL+ ++G +E +     GPL +   +  +  I 
Sbjct: 447 QKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPS-NQRYQLDIII 505

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +SGQ L  L++++LD  ++  G  ++ +SA++L    R  + +       K + I  ++ 
Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             ++ V AD + + QV+ NL+ NA+K+T   G++ ++          + + D G GI   
Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISANVV-DDKVRVQVVDTGQGIPAE 623

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 624 QLEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLA 683

Query: 476 RVLNFIPEDNHESTQY 491
                   +  ++  +
Sbjct: 684 SADEISATEVMQNQHH 699


>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
 gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|254293600|ref|YP_003059623.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042131|gb|ACT58926.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 474

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/458 (23%), Positives = 190/458 (41%), Gaps = 40/458 (8%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN---SDIKIGEVYVWRIWLLVG 113
           L    +   +       + S     + A                    E+ VW + +++G
Sbjct: 29  LCTGVLFALWISGTSLLI-SSGVFLIAALPAFAQILTARLGGDASHELEMAVWIVVVMIG 87

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
             A+G           G  +P  +  +      +++     +     +AV       ++A
Sbjct: 88  ATAMG-----------GATSPISIAFFIPVVTALSIGRKRQAIEASAFAVLGFCLAALLA 136

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAE-KDDLIAELE 229
                 +   +LD +       +L +   +   +     SN  ++  + +  D +     
Sbjct: 137 RMDFLPIPKELLDPAPGIFALVSLIYMASLVRKISLAHNSNGMLVRIREQANDHIARLSR 196

Query: 230 VAKSLSDETRKRAEEENLA--------------------KSRFLASMSHELRTPLNAILG 269
             + LSD   K  E  N A                    ++ F A  SHELR+ LNAILG
Sbjct: 197 QKEILSDRVNKADERANQAALSLSQEKEASFELKEKLAQRTLFFAKTSHELRSSLNAILG 256

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FSEV++    G L++  YKEY   IH  G+ L   +++ILDLS+I+AG+Y++S   +SL 
Sbjct: 257 FSEVMKEGVFGELSD-KYKEYAQMIHEGGKSLQMTVDDILDLSKIDAGQYKISPVQVSLT 315

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ + +  +  +A+  +I++           +AD + +R +  NL+SNA+KFT  GG V
Sbjct: 316 ELMWDMVKFMSDQARRSDIKLSVSSLDRDVEAYADPRAVRHIAQNLVSNAIKFTPHGGAV 375

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++V      G ++S++D GPG+   E   +L  F Q   +  S + G GLGL +     
Sbjct: 376 AISVREDEDGGSWMSVRDTGPGMDPAEFEKILKPFIQTDESSTSGKHGTGLGLSVVNGFA 435

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             HGG   + S+  EG  +    P     +     + E
Sbjct: 436 QLHGGHIQLDSQAGEGSIISVYFPKKPTPSKAEVKDSE 473


>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
          Length = 933

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 889

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           + +    +      +     Y              E+     E E         R  AE 
Sbjct: 447 IPVHFEILYELWDMWLEVHAYPSEDGLGIFFRNITERKQAEQEREYLLMREQIARGEAER 506

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  K  FLA +SHELRTPLN ILG++ +++   +      T +  I  I R+ +  + L
Sbjct: 507 ANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNL---EEATRRRGIETIERNAKLQIQL 563

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I ++LD+SRI+ G+  L+  +++L+  + E +  ++L  + K+I I   +  ++  V  D
Sbjct: 564 IEDLLDVSRIQQGKLSLNIQSVNLVHTIEEALETVRLAIEAKSIHIKTALGVNVGMVAGD 623

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++Q+I NLL+NA+KFT   G++ V +         I I+DNG GI+   +P V   F
Sbjct: 624 AARLQQIIWNLLANAIKFTPPAGQIQVVLERV-NNSAQIQIQDNGKGISSEFLPYVFEYF 682

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            Q    I     G+GLGL I + +   HGG     S     G      LP 
Sbjct: 683 RQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGAIFTVNLPL 733


>gi|86145971|ref|ZP_01064298.1| signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85836176|gb|EAQ54307.1| signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 574

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 137/286 (47%), Gaps = 8/286 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L A +    +     RK AE  N AKS FLA MSHELRTPL
Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVAARKDAERANKAKSEFLAMMSHELRTPL 225

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA +G  + ++   +    N+  +  + ++  S + LL +I+++LD S+IE+G + L+  
Sbjct: 226 NATIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +  D V   +   +  A +K + +    D P     + D   + Q++ NL+ NA+KFT
Sbjct: 282 WSNARDTVTFVLSEQKKIADDKGLSLTLTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G VHV++ +       IS++D G GI+  ++ ++ + F Q    I     G GLGL 
Sbjct: 342 -EHGHVHVSITYQHSSF-RISVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHES 488
           I + ++    G+  + S+  +G +    LP  TRV N       + 
Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVRLPVLTRVTNNQDHAAEDK 445


>gi|70730077|ref|YP_259816.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344376|gb|AAY91982.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 751

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 161/374 (43%), Gaps = 15/374 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA---VFLSFFPVVVAL----S 175
           L  +      T     ++ S  L       +   + L      V   F   V A      
Sbjct: 135 LGAVYRRLYATGLASLLWMSVFLCGLAVALSGLFYRLVTRHLQVMADFARRVAAGELHEP 194

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                        +  +          +   + +     L+ Q ++D+L   ++   +  
Sbjct: 195 LHLDKRQRPDGDEIDTVARALDDMRRAVLDDVQRREADRLALQDKRDELQKMVQRRTASL 254

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +  AE  NLAKSRFLA+MSHELRTPLN ILG +E++    +G  +    ++ +  +H
Sbjct: 255 MHAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRSAPLGSQD----RQRLQALH 310

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           ++G+ LL+++NE+L  +R+E G         SL  ++ E   +LQ RA+     +   ID
Sbjct: 311 QAGEGLLSILNEVLSFARLEEGESRPEVRDFSLRQLLEEVTTLLQPRAEANRTRLELHID 370

Query: 356 PSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYIS--IKDNGPG 411
             L       E+ +RQV+ NLL+NA++FT  G  RV V V  ++  GQ +   ++DNG G
Sbjct: 371 EQLAPRQQGAEQYLRQVLSNLLANAIRFTEDGWVRVEVQVLHSAAEGQRLRCCVRDNGIG 430

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA      +   F Q S  +     G GLGL I + ++    G+  + S+L +G      
Sbjct: 431 IAASMREKIFERFVQASDEVSRRYGGTGLGLAICKHLLQQLDGRIGVDSELGQGSSFWFE 490

Query: 472 LPNTRVLNFIPEDN 485
           L        +P   
Sbjct: 491 LVLGVGQEPLPSPQ 504


>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
 gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sp. D9]
 gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
 gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
 gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
          Length = 1129

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 159/374 (42%), Gaps = 6/374 (1%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           GL W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 332 GLTWALVVQLPEKEAFTRVHQLEKLFVIAMLVAIILVVIASHYLSNFITSPLLKLTWAAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + + +        +         + +S  + +    +++     LE    L  +
Sbjct: 392 RVSAGDLDESTFNTKRKDEIGRLAISFERMQRSIREKIQTIKQQN---EALESNIKLIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +  +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 449 QNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGANGGI-PASQKYQLDIIIKS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K T+  G++ ++      +   + + D G GI    +
Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKHTSE-GKIVISANIIDEQ-VRVQVVDTGQGIPAEYL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLYVSSQPMVGTTFSFTLPLASE 685

Query: 478 LNFIPEDNHESTQY 491
                 ++  + ++
Sbjct: 686 EEIKAAESLTAREH 699


>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 991

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 15/328 (4%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           A ++S    F L          +  AL T         +     ++         +   L
Sbjct: 246 ADAVSGPVPFSLMDENASGTAAISSALLTDRDQVSIPENADPQLVIQLQRDALMNL---L 302

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +NV   +       L   +  A+ ++          N AKS+FLA+MSHE+RTPLN +
Sbjct: 303 HDANVARNALLDANKKLEDAIRNARKMAAHADAA----NDAKSQFLANMSHEIRTPLNGV 358

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G ++++    +        +++   I  SG++LL L+N+ILD S+IEA + E+      
Sbjct: 359 IGMTDLLLESALDT----EQRKFAQTISSSGRNLLRLVNDILDFSKIEANKLEIEYLDFD 414

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L+D++ E I +    A EKN+++    D ++   +  D   ++Q+++NL+SNA+KFTA G
Sbjct: 415 LLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAARLQQILVNLVSNALKFTAEG 474

Query: 387 GRV-HVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             V  V +   S        ++ D G GI    I  V   F Q   ++     G GLGL 
Sbjct: 475 EVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPFTQADGSMIRKYGGTGLGLS 534

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I+  +      +  ++S    G      
Sbjct: 535 ISNQLARKMNSEIHVQSSPENGSTFCFS 562


>gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 419

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL   + L D  R+ A   +  KS F+A+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMA----TATSE 222

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+I+AG      S     D++RE   +  +R  
Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLN 282

Query: 345 EKNIE-IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E  +  +  +       + ++++ + QV+ NLL NA+KFT   G +            Y 
Sbjct: 283 ENPLVALVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGTDEVYF 341

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG+F + S++ 
Sbjct: 342 YVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNFGGRFGVESEVG 397

Query: 464 EGVEVIAILPN 474
           +G     ILP 
Sbjct: 398 KGSTFWFILPL 408


>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii CDC 3083-94]
 gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
           CDC 3083-94]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SMS-3-5]
 gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           SMS-3-5]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
 gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
          Length = 1040

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 175/445 (39%), Gaps = 16/445 (3%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
              L  +   +        P W+  +L+     L++      S  +  +       +L  
Sbjct: 449 ALRLRWSEPSSIAGSTETLPSWAWFSLSAGLVLLAISLLWSQSLRQQIQRRRRMEAVLHE 508

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA--LSNFMLPYAVF-LSFFPV 170
           Q+A                  +   +  +A    AL      +    +      L   P+
Sbjct: 509 QLAFQTSILDAIPQPIYLRDIDLRLMTCNAAFERALGCGRKQMRGRTIDQMPLKLGDVPL 568

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +    + + +     +    M+             L  +   ++       D+  E + 
Sbjct: 569 SMQTYRKVLATGEAATLDRTLMIEGKERIVLNWVEPLRNATGGVVGIIGGWIDM-TERQQ 627

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             +     + RAE  N AKS FLAS+SHE+RTP+NAILG  E+   +   P ++      
Sbjct: 628 MVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDKRLPDDDRLQ--- 684

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +     S + L+ LI++ILD S++EAG++ L+     L  ++ +   +  L A  K +++
Sbjct: 685 VETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSLFGLAASRKGVQL 744

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISI 405
              +D ++      D    +QV+ NL+SNAV+FT   G V + +G T      +    S+
Sbjct: 745 EAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDR-GSVVIRLGATNLTPDCQSLTFSV 803

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI E  +  +   F Q     K +  G GLGL I Q ++    G   I S++ +G
Sbjct: 804 SDTGTGIPEDGLKKLFQPFTQIGD-TKRSAGGTGLGLSICQRLVTKMHGTIGITSEVGKG 862

Query: 466 VEV--IAILPNTRVLNFIPEDNHES 488
             V     LP    +  + +   ++
Sbjct: 863 TTVTATIELPIAAEIAPVLQSEQQN 887


>gi|322700316|gb|EFY92072.1| putative histidine kinase HHK1p [Metarhizium acridum CQMa 102]
          Length = 2549

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 30/284 (10%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEEN-LAKSR-------------FLASMSHELRTPL 264
            AE   +++  + A + + E   +A+     AK               FLA++SHELRTPL
Sbjct: 1921 AENRGMVSVQKRALAKALEAETKAKHAEAEAKRNVKLAEEAAKAKAIFLANVSHELRTPL 1980

Query: 265  NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            N ++G SE++    +    N    E    I  S   LL +IN+ILD S++EA + +L   
Sbjct: 1981 NGVIGNSELLRDSDL----NREQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYII 2036

Query: 325  AISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
            A +  ++VRE +  +    + +  +KN++I Q I+     ++ D   + QV+ NL+ N++
Sbjct: 2037 AFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRLHQVLGNLIGNSL 2096

Query: 381  KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            KFT   G V +     +           ++D G GI   ++  +   F Q   +      
Sbjct: 2097 KFT-EDGSVTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPFSQADASTARKYG 2155

Query: 437  GVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRV 477
            G GLGL I +S++     G+  + S+  EG            + 
Sbjct: 2156 GSGLGLSICKSLIEIMMKGKIQLESEESEGTTAWFTVTFEKAKA 2199


>gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
 gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
          Length = 1733

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 20/249 (8%)

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 1115 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSIL----NAEQLEHVNIIKSSTDSLLNLIND 1170

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            ILDLS++EAG  +LS   + L  ++ E   +    A +K +E+   +D  +   V  D+ 
Sbjct: 1171 ILDLSKVEAGMIKLSMEWLHLPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPSMVKGDKF 1230

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGE 416
             +RQV+LN++ NA+KFT+  G + V               +       + D G G  E E
Sbjct: 1231 RIRQVLLNVVGNAIKFTSS-GEIFVRCKVQSPERSGPLGDNETVVRFEVIDTGRGFTEQE 1289

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472
               +   F Q   +      G GLGL I+   +  HGG+   RS   +G          L
Sbjct: 1290 AKFLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGKMDARSVPNKGSTFFFTIKFGL 1349

Query: 473  PNTRVLNFI 481
            P        
Sbjct: 1350 PTEEDHPPP 1358


>gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 446

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      + +AE  +  KS FLA+MSHE+RTPLN+I+GF+ +I        + 
Sbjct: 204 IDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIAE----LDDR 259

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +EY+  +  + + LL LI++ILDL++IEAG  + +   + + D  ++ +    ++ +
Sbjct: 260 EERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNYDIK-E 318

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QV+ N ++NA+KFT+  G++ +      G      
Sbjct: 319 DKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSE-GQILLEYHPVEGTGQIEF 377

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GIA   + TV   F +      +  +G GLGL I +SI+ + GG     S+L 
Sbjct: 378 SVTDTGMGIAPDAVATVFDRFVKL----NTFAKGTGLGLSICKSIIEHLGGTIGTESELG 433

Query: 464 EGVEVIAILPNTR 476
            G       P   
Sbjct: 434 VGSRFWFRHPCAE 446


>gi|239993253|ref|ZP_04713777.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii ATCC 27126]
          Length = 938

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 38/363 (10%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +    + +++   V      +V  ++          +   A   A  +   + ++     
Sbjct: 462 AFGTFTGYVVAKMVGAPIRRLVRYIAE---FDPTQKEGVKAPQRALHIQELSSLSDEFVS 518

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------ENLAKSR 251
              ++L    E        +       E  +  E+                   N+AK++
Sbjct: 519 LEARLLDAFEELKVAREVEQSLNVELGELNQSLEKRIEEKTEHLALALKEAEAANVAKTQ 578

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G  E++    +     E        I RS  +LL +++ ILD 
Sbjct: 579 FLANMSHEIRTPMNGIIGSCELMLENEL----PENVSARAKTISRSASNLLIILDSILDW 634

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IE+G+      + ++ +++     + +  AQ K  +I   I+  +  ++  D   + Q
Sbjct: 635 SKIESGKMLTDIQSCAIRELLEASCDLYRHAAQVKGYDIALYINQGVPNALNIDAGKVSQ 694

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +I NLLSNA+KFT+  G V V V + + +G  IS+ D G GIA  ++  +   F Q   +
Sbjct: 695 IINNLLSNAIKFTSD-GVVTVNVSY-AHQGLKISVSDTGIGIAPNKLRLIFDKFEQADPS 752

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----------RVLNF 480
                 G GLGL I++ ++   GG+  + S+L +G      +P T           V+  
Sbjct: 753 TTRNFGGTGLGLAISKGLVELLGGELYVESELGKGTSFTFHIPATVSEEKEHAENEVIPS 812

Query: 481 IPE 483
           +P+
Sbjct: 813 LPD 815


>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii Sb227]
 gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
 gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
          Length = 949

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
 gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
          Length = 834

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 377 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 436

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 437 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 492

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 493 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 552

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 553 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 611

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 612 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 671

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP   V    P+   +
Sbjct: 672 GTRFEIQLPIELV--ERPDAPQQ 692


>gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 562

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + +T  E++  I +    +  L+ ++
Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLLDGA--KNDEQTLNEFLKIISKESDRIETLVFDL 399

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS +E  + E+    +SL +I    I  +Q  A+EK I I  +I P +  + A++  +
Sbjct: 400 LDLSHVEQ-QTEIVTEYVSLSEIAESTIKNMQNIAEEKQITIVNEIKPDIV-IDANKDKV 457

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV LNLLSNAV ++     V V V +     + + ++D G GI+  +   +   F +  
Sbjct: 458 SQVALNLLSNAVSYSKASSEVIVRV-YKDANKRIMEVQDFGIGISAEDQQHIFERFYRVD 516

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + IM  H G+  + S+  EG       
Sbjct: 517 KARSRDSGGTGLGLSITKHIMEAHNGRINVFSRPNEGSTFRVTF 560


>gi|291613055|ref|YP_003523212.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583167|gb|ADE10825.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 725

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 19/303 (6%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASM 256
              L K        +AE     +E++ A        ++ E         N AK  FLA+M
Sbjct: 153 VEQLGKIEAHAERMEAEVMRRASEVKDANRALKIAMQKLEQRETELAAANRAKDSFLATM 212

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPL  +LG  E++ +  +        +  +     SG+ LL ++++ILD S+IE 
Sbjct: 213 SHEIRTPLTGMLGMLELLSMTQLDM----EQRMTLDTAWDSGRGLLRIVSDILDWSKIEE 268

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNL 375
           G+ ELS    S+  +++E +      A  K + + +++DP +S+    D   + QV+ N 
Sbjct: 269 GKLELSLRPTSIPQLLQEVVNTYSRVASAKTLILCRRVDPRISAAHIVDPLRLSQVLNNF 328

Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +SNA+KFT   G + ++        SG     S+KD G GIA+     +   + Q S   
Sbjct: 329 VSNAIKFT-QYGEIELSAELIERLDSGERIRFSVKDTGIGIAKEVQKHLFQRYRQESADT 387

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IAILPNTRVLNFIPEDNHEST 489
                G GLGL I + +     GQ  ++S+   G        LP + V   I +  H   
Sbjct: 388 ARMYGGTGLGLAICRRLTEMMDGQIGLKSEPGLGSIFSITLTLPVSGVPGEIVQSIHPEV 447

Query: 490 QYK 492
           +++
Sbjct: 448 KHR 450


>gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 726

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R R  E +  K  F+  +SHELRTPL +ILG++E++       L+ E+ +E++  +    
Sbjct: 473 RTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ--DLDYESQREFLQTVSNEA 530

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  ++ ++LD+SR+EAG  +L+  A+ L  ++ E    LQL  Q  + ++       L
Sbjct: 531 ERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEEL--TLQLHTQLIHHKLLIDARTPL 588

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----------SGRGQYISIKDN 408
             V+AD   ++Q+I NLLSNA+K++  G  + +TV              G+   I ++D 
Sbjct: 589 PPVFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDE 648

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +   +   F +   +    + GVGLGL I++ ++  HGG+  ++S    G   
Sbjct: 649 GIGIKPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSF 708

Query: 469 IAILP 473
              LP
Sbjct: 709 SFTLP 713


>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio angustum S14]
 gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium angustum S14]
          Length = 1114

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 153/352 (43%), Gaps = 6/352 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K   + +  +I  +       +  ++   + +  + +   
Sbjct: 318 WALVVELPEKEAFARITELEKIFGVAMISAIILVIFASHLLSNSITAPLLRLTWAAEKAS 377

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +  +      +  +         + +S  + +     ++D   ELE +  +  +   
Sbjct: 378 GGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKIIKQKNN 434

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  +  K  FLA+ SHELRTPL+ ++G +E +     GP+  ++ +  +  I  SGQ 
Sbjct: 435 ELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPV-KDSQRRQLEMIINSGQR 493

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L NL++++LD  ++  G  ++   AI L   VR  + +       K + I  +I  +L  
Sbjct: 494 LTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPANLPL 553

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V ADE+ + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   ++  +
Sbjct: 554 VDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPSEQLEHI 611

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                Q +    +  QG GLGL I++ ++   GG+  + S+   G      L
Sbjct: 612 FEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 663


>gi|327383867|gb|AEA55343.1| Two-component sensor histidine kinase [Lactobacillus casei LC2W]
 gi|327387048|gb|AEA58522.1| Two-component sensor histidine kinase [Lactobacillus casei BD-II]
          Length = 636

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +    ++         ++ +I
Sbjct: 377 DRNRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|229154966|ref|ZP_04283080.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342]
 gi|228628524|gb|EEK85237.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342]
          Length = 466

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 343

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 161/347 (46%), Gaps = 17/347 (4%)

Query: 140 YKSATLLIALSIS---ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +K   L+ A ++    ++ +F   + +  +F    ++L    ++   + +  +   + T 
Sbjct: 3   FKLLVLINAAAVGLSISIVSFYYQHDIKAAFIIFGISLIVSFVVFYFLFEKYIYRRINTI 62

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR----- 251
                 +   L K     L  +   DD I + E    + D  +++  E +  +S+     
Sbjct: 63  YKLIHNL--KLGKDLKDALG-EYVSDDPITDAER--EVRDWAKEKKSEIDKLRSQEKFRR 117

Query: 252 -FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL+++SHE +TPL AI G+ E ++   +   + E  K ++    ++   L  LI+++ +
Sbjct: 118 EFLSNISHEFKTPLFAIQGYIETLQDG-LIEEDPEMAKGFLDKASKNLDRLSYLIHDLDE 176

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMR 369
           +S++E+GR  L+     L ++++E I  L  +A+ + I+I  K    +++ V AD K ++
Sbjct: 177 ISKLESGRISLNIEKFDLSELIKETIENLDDKAKSQKIDIVFKQKYQNVTFVKADRKKIQ 236

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV+ NL+ N++K+   GG   + +     +   + + D+G GI E  +P V   F +   
Sbjct: 237 QVLTNLIDNSIKYGKTGGSTDIRIFPLFEQ-VLVEVTDDGQGIEEKNLPRVFERFYRTDK 295

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +      G GLGL I + I+  H     +RS    G      L  ++
Sbjct: 296 SRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEKSK 342


>gi|309781490|ref|ZP_07676226.1| composite two-component regulatory (sensor kinase and response
           regulator hybrid) transcription regulator protein
           [Ralstonia sp. 5_7_47FAA]
 gi|308919903|gb|EFP65564.1| composite two-component regulatory (sensor kinase and response
           regulator hybrid) transcription regulator protein
           [Ralstonia sp. 5_7_47FAA]
          Length = 638

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79
             GL   + ++ D     L          I    VL    +  ++  +  P    W LI 
Sbjct: 39  KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 98

Query: 80  LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L + A       G +   + + +      W   + V     G+ W     +   + + E+
Sbjct: 99  LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 158

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195
            ++     ++I ++ +A+ +     +  L     ++A              + L G+L  
Sbjct: 159 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 216

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +  T    ++  + V+ +  + E   L      A+   DE ++RA   +  KSRFLA+
Sbjct: 217 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 269

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SH+LR P++AI+   E +         +E+    +  +      +  L   +LDLS++E
Sbjct: 270 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 325

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           + +   +   + L +++ E +      A+ K + +  +I P      A+   +R+ + NL
Sbjct: 326 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLTARIPPLPVYGMAEPVLLRRALFNL 385

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L NA+++T  GG  V + V     +   I + D G GIA      + +++ Q     +  
Sbjct: 386 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 442

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            QG+GLGL I +  +    G F +RS    G      L         P       + K
Sbjct: 443 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 500


>gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1139

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   I+E + ++      +++AE  N  KSRFLA+MSHE+R+PLNAILG  E++  
Sbjct: 485 LFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLH 544

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    N+  + +      +G  LLN IN+ILD S+IEAG+  L  +      +V + +
Sbjct: 545 SKL----NKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFEPDKLVAQVL 600

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +L+ +A +K +++   +D ++   +  D + + QVI NL+ NA+KF+   G + V +  
Sbjct: 601 QILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVS-GTITVEMWI 659

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +      +  + D+G GI+E     +   F Q      +  +G GLGL I + ++  
Sbjct: 660 ADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITM 719

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG+  + S+L +G      
Sbjct: 720 MGGEIELESELDKGCCFTFY 739


>gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 1166

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 10/239 (4%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +  R  AE    AKS+FLA+MSHE+RTPL AI+G+ E +    +   +    +     + 
Sbjct: 549 ELARNSAE----AKSQFLANMSHEIRTPLAAIIGYGETLLDPDL---SEPEKRSSAETVV 601

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RSG+HLL+L+N+ILD S+I+A + ++   +++L +++ E       RA+EK ++     +
Sbjct: 602 RSGRHLLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICE 661

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIA 413
             L   V  D   +RQ+I+NL  NA+KFT   G + + V     +   +  + D G G+ 
Sbjct: 662 YPLPEQVRTDPTRLRQIIINLCGNALKFTDK-GSISLVVRCDRDQELLVARVVDTGIGMK 720

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +   F QGS AI     G GLGL I++ +    GG   + S   EG E    +
Sbjct: 721 PEQLGRLFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNSTYGEGSEFELSI 779


>gi|255014410|ref|ZP_05286536.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 602

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L        +        ++ + +  F + ++ +  +       QA+K  L+ 
Sbjct: 308 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 366

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 367 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 419

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 420 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 478

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405
            IE  +K   +   +++D++ + Q + N+L NA+KFT+  G + +   +++  +   + +
Sbjct: 479 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSAEAQDVRLYV 537

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 538 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 593

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 594 CRISLVF 600


>gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1195

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 172/431 (39%), Gaps = 31/431 (7%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
           +  +     +  IG+    R  L++  +       +    +        + I     +  
Sbjct: 301 AAARSFAEGETLIGQAAAARRTLVLRDVPADYVQVVSATGKSAPKNLLVMPIENDGQVNG 360

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------LATALSFFT 201
            + +  +    +    F+      +    +A +    L  +LA        L        
Sbjct: 361 VVELGFIRELGVRDQEFMELIAKSMGDFVEAALYRERLQDALAETQQLNEELQVQQEELR 420

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-TRK-------------------- 240
                L +    ++  Q   +   AELE      +E  ++                    
Sbjct: 421 VSNEGLEERGRALMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAA 480

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R E+ +  KS FLA+MSHELRTPLN+ L  +++++    G L  E  + Y   IH S   
Sbjct: 481 RLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSD 539

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           LL LIN+ILDLS++EAG+  +    +S+   ++      +  A  +++ +     P    
Sbjct: 540 LLVLINDILDLSKVEAGQVTVELETVSIDATLQALEETFKPLAGARHLSLAFDRLPGTPD 599

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +   D + + Q++ NLLSNAVKFT   G V ++V    G      ++D+G GIA  ++  
Sbjct: 600 TFITDGQRVTQILRNLLSNAVKFTER-GEVALSVAPAEGGMLRFDVRDSGIGIAADKLDM 658

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVL 478
           +  +F Q   +      G GLGL I++      GG+  + S++ +G      LP      
Sbjct: 659 IFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPLDAEAA 718

Query: 479 NFIPEDNHEST 489
               +D H +T
Sbjct: 719 LNASQDAHHAT 729


>gi|317486464|ref|ZP_07945289.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922267|gb|EFV43528.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 907

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 14/334 (4%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L+ L    + +     A    F P  +A         H L      ++    + +  +  
Sbjct: 291 LVRLRSETVVHPDDVEAYRAFFKPERLAWENGTPGLSHELKYR--VLMGNGQARWHCLRA 348

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +LF    ++L   A+    + E E  K+        AE+ N AKS FL+ MSH++RTP+N
Sbjct: 349 YLFDPVRRMLLFCAKD---VEEEERQKATLRMALVAAEQANHAKSEFLSRMSHDIRTPMN 405

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G + +  +    P   E   E + +I  S + LL+LIN++LD+++IE+G+  L+   
Sbjct: 406 AIIGMAAIAGMNVGNP---ERLSECLNNIALSSRFLLSLINDVLDVAKIESGKMSLASEP 462

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384
               ++V          A  K I       P L  ++  D   ++QV++NLLSNA+KF  
Sbjct: 463 FDFDELVSSVSSFTYGSAVAKGIIFNLFASPLLEKIYVGDPLRIKQVLMNLLSNALKFAP 522

Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             GR+   +               I DNG G+++     +   F Q  +  +    G GL
Sbjct: 523 EKGRIEFNITPVQKVGHRELVRFVISDNGIGMSKSFQERMFQPFEQ-EMTDQRGLSGSGL 581

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL I +S +    G   + S+  +G      +P 
Sbjct: 582 GLAIVRSFVQLMDGTIRVESEQGKGSSFSVDIPL 615


>gi|226322433|ref|ZP_03797951.1| hypothetical protein COPCOM_00204 [Coprococcus comes ATCC 27758]
 gi|225209155|gb|EEG91509.1| hypothetical protein COPCOM_00204 [Coprococcus comes ATCC 27758]
          Length = 438

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 139/310 (44%), Gaps = 7/310 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V      +    +T  ++  +++ I +             +   +   N   L    E D
Sbjct: 134 VLRVSRGMDTVWNTAFMILPYMIAIGVMMGCVAWFMTRHQVKRLIAPINNLDLEEPLEND 193

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                  + + +  + +++A      +  F A++SHEL+TPL +I G++E++     G +
Sbjct: 194 VYEELHPLLERIDRQNKEKA-AIEQMRREFSANVSHELKTPLTSISGYAEIMMN---GLV 249

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  + +   I++    ++ L+ +I+ LS+++ G  EL +  + L  + RE +  L L+
Sbjct: 250 KSEDMQGFSERIYKEASRMITLVGDIIKLSKLDEGSVELEKENVDLYQMTREIVSRLALQ 309

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+++ I++    +      +   + + ++I N+  NA+K+    G+V++ VG T    + 
Sbjct: 310 AEKRRIQVEVVGE--HVECFGIRQILDEMIYNICENAIKYNKENGKVNIWVGNTLNGKKV 367

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI +     +   F +   +      G GLGL I +     H  +  + S+ 
Sbjct: 368 I-VQDTGIGIPKEHQDRIFERFYRVDKSHSRETGGTGLGLSIVKHGALLHNAEIHVESEE 426

Query: 463 REGVEVIAIL 472
            +G ++  I 
Sbjct: 427 GKGTKMELIF 436


>gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli GR56]
          Length = 332

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/276 (34%), Positives = 151/276 (54%), Gaps = 1/276 (0%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
              +  +     +     L+    +   ++  +  ++ +      AE  N AKSRFLA++
Sbjct: 9   QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 68

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAILGFS+++  E  G   N+  +EY+G +  SG HLL+++N +LD+S+IEA
Sbjct: 69  SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 128

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GRYEL   A  +   VR C  ML L+A+ K + +  +I   L  + AD++ ++Q+++NL+
Sbjct: 129 GRYELILEAFDISASVRSCESMLALQAKSKGVTLTSRIQRGLGEIVADQRAIQQILINLV 188

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NAVKFT  GG V V           +++ D G GIA  ++  +   F Q         +
Sbjct: 189 GNAVKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIAADKLAMLGQPFVQIQNDYTRRFE 247

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++A HGG F I S+  EG  +   +
Sbjct: 248 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 283


>gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 646

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 7/259 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +++    AE +    L    R  AE  N  K  F+A +SH+LR+PLNAILG+S+++    
Sbjct: 394 SDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQ 453

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   +  T+   +  I R+ Q    L+ ++LD+SRI  G+ +L    + L  I+   I  
Sbjct: 454 L---DESTFTRALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCLVELPAIIGVAIET 510

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               A+ K+I +   ID S+  +  D   + QV+ NLLSNA+KFT   G++ V + +T  
Sbjct: 511 AYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT-D 569

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I++ D G GI    +P V   + Q     +  + G+GLGL IA+ ++  HGG   +
Sbjct: 570 SEAHITVIDTGIGIKSEFLPYVFERYRQADC--QHKQHGLGLGLAIARYLIELHGGAIHV 627

Query: 459 RS-KLREGVEVIAILPNTR 476
            S    +G      LP  +
Sbjct: 628 NSLGEGQGTTFTIKLPLHQ 646


>gi|282898666|ref|ZP_06306654.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196534|gb|EFA71443.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 644

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 154/344 (44%), Gaps = 21/344 (6%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            + L+++++ + +L          +++AL+   + +  ++ + LA +LA  +        
Sbjct: 298 WVILAVASVRDALL---GLDQIKLILIALTVGLVGASLLVSLYLAPLLADPVEGLRDYAL 354

Query: 206 HLFKSNVKI-----------LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
           ++   +                     D ++  L+      +   K A+  N  KS+FLA
Sbjct: 355 NIHSHHAVQPIPRNFRIKEFNQLAQALDQMVERLKAWTEELEMAWKEAKSANTVKSQFLA 414

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           + SHELR PLN I+    ++        + E   E++     +  HLL +IN++LD+S+I
Sbjct: 415 NTSHELRNPLNIIINCVRLVRDGLCD--DKEEELEFLKKADDTAIHLLGIINDLLDISKI 472

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+  +    + L  ++ E I +  +  Q+K +++  +I   +  +  D   ++QV++N
Sbjct: 473 EAGKLSVVMIPLELRQLLLEVINLQSVNVQKKGLQLKCEISEQVIPIKGDRIKLKQVLIN 532

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++ NA KFT   G + ++             IS+ D G GI   +   +   F       
Sbjct: 533 VIGNATKFTEE-GSITISTKVIKQHSKLYVVISVVDTGIGIDPQQQQKLFRPFVMVDGTT 591

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
               +G GLGL I+++++   GG+  + S  L  G  V  ILP 
Sbjct: 592 TRKFEGTGLGLAISRNLIELMGGKITLESLGLNRGTTVKIILPL 635


>gi|254444049|ref|ZP_05057525.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
 gi|198258357|gb|EDY82665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
          Length = 1318

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 27/381 (7%)

Query: 110  LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
            + V      L  +   L       P+ +            S     ++ L          
Sbjct: 660  IRVSAEVNQLQMSGPPLFVFELSGPKSMVSEPGKESTFEFSGLQSGDYTLTARAIDEAGE 719

Query: 170  VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            +      +  +         A    T  +   ++    F+    IL+ +     L   +E
Sbjct: 720  LAAPAEVRFRVLPLFYQTKQAYAFYTLSALGLFLLIGRFR----ILALRRSNAKLARLVE 775

Query: 230  VAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTPLNAILGFSEVIE 275
             + S+ +E  ++    N                KS FLA MSHE+RTPLN ++G   V+ 
Sbjct: 776  ESTSVLNEKNEKLVLVNRELKEMAEHAEQAAAAKSSFLAVMSHEIRTPLNGVIGMCSVLR 835

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +  +     ++Y+  I  SG  LL ++N+ILD S+IE GR  L      L+D+V   
Sbjct: 836  QTNLDSM----QRDYLESIRVSGLSLLEVVNDILDYSKIEKGRLSLECILFDLVDLVESV 891

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            + +L L+A EK +++   IDP +  + + D   +RQ++ NLL NA+KFT   G V V++ 
Sbjct: 892  VSLLGLKANEKELDLHLLIDPRIKRLHYGDPTRVRQILYNLLGNAIKFT-KLGSVTVSLY 950

Query: 395  WTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              SG       + + D G GI E +   V  +F Q  ++      G GLGL I + +   
Sbjct: 951  PKSGYDSDHLVMEVSDTGVGIEEDKHEAVFEAFAQSDVSDVRKFGGTGLGLSICRQLAGL 1010

Query: 452  HGGQFLIRSKLREGVEVIAIL 472
             GG   + S+L EG      L
Sbjct: 1011 MGGDIELESRLDEGSTFRVSL 1031


>gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1548

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 28/335 (8%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P +       ++     ++ L  +       F+     +     ++ +   E   L    
Sbjct: 1092 PPLRGWLAAPLVGRDGHNLGLIQLSDKYEGEFSEADETILVQLAQMAAVAIENTRLYQAE 1151

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            + A++ ++ T       N  K  FLA +SHELR+PLN ILG+S++++     P +  T +
Sbjct: 1152 QEARAAAERT-------NRIKDEFLAILSHELRSPLNPILGWSQLLQNR---PFDAATTQ 1201

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  I R+ +  + LI+++LD++RI  G+  +  S + L+ ++   I  ++  A  K+I
Sbjct: 1202 QALTTIERNARLQIQLIDDLLDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSI 1261

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------- 398
             +   +      V  D   ++Q++ NLLSNA+KFT  GGRV V +G   G          
Sbjct: 1262 HLELDLAQIGP-VCGDATRLQQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPS 1320

Query: 399  -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 +++ D G GI+   +P +  SF Q   +      G+GLGL I +S++  HGG   
Sbjct: 1321 PHFAKLTVTDTGKGISPDFLPHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIW 1380

Query: 458  IRSK-LREGVEVIAILPN-----TRVLNFIPEDNH 486
              S    +G       P       + L   P +  
Sbjct: 1381 ADSAGEGQGATFTVCFPLLTPTPAQELPSPPPEQE 1415


>gi|162420651|ref|YP_001608241.1| two-component sensor/regulator [Yersinia pestis Angola]
 gi|165926708|ref|ZP_02222540.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402481|ref|ZP_02307936.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418881|ref|ZP_02310634.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|162353466|gb|ABX87414.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis Angola]
 gi|165921331|gb|EDR38555.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166962875|gb|EDR58896.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048131|gb|EDR59539.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
          Length = 891

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L             +  L++ +     +    P+   ++
Sbjct: 223 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 282

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +++      
Sbjct: 283 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 336

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E ++ AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 337 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 392

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 393 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 452

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            ++   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 453 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 510

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 511 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 566

Query: 475 TRVLNFIP 482
             +   +P
Sbjct: 567 NAITPPMP 574


>gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
 gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/244 (33%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS ++          E  KEY+  
Sbjct: 270 ELLEAKEKAEESNKLKSAFLANMSHEIRTPLNAIVGFSSILSEYI----QEEDAKEYVHI 325

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  + Q LL LIN+ILD+SRIEAG  E  E  + +   + E   + +L+     IEI   
Sbjct: 326 IEENNQLLLQLINDILDISRIEAGILEFIEENMDVNASLYEIKAIAELKVS-PKIEIHLL 384

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  +      ++QVI N +SNA+K T   G + +             ++D G GI 
Sbjct: 385 PGLETCVIHTVPHRVKQVINNYVSNAIKHTEA-GHIDIGYYTPQEGYIRFFVRDTGTGIP 443

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +   F +      S +QG GLGL I   I     G+  + S L +G E    +P
Sbjct: 444 TENQKHIFERFVKLD----SFKQGTGLGLSICTIIAEKMNGKLGVNSTLGKGSEFWFEIP 499

Query: 474 NTRV 477
              V
Sbjct: 500 YVPV 503


>gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 877

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 8/237 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE EN AKS FLA MSHE+RTP+N +LG +  +    +    +   +  +  I  SG 
Sbjct: 362 EQAEAENRAKSDFLAMMSHEIRTPMNGVLGLANSLLETKL----DPEQQHAVTTIRDSGD 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +LL ++N+ILDLS++EAGR E  +   S   +V     +++  A+ K + +   +DP L 
Sbjct: 418 NLLRILNDILDLSKLEAGRIEFEQVNFSPSVLVDAVRSIVEPNARAKGLTLKIDVDPRLP 477

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEG 415
             +  D + +RQV+LNL  NAVKFT  GG  + +T          I   + D G GI   
Sbjct: 478 PALTGDAQRIRQVLLNLAFNAVKFTDRGGVTIVLTCVRRDDAYATIEWQVTDTGIGIPLD 537

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + ++ T F QG ++I     G GLGL I++ I+   GG   + SK  EG      L
Sbjct: 538 RVGSLFTDFAQGDVSINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGSTFRFSL 594



 Score = 60.3 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 57/209 (27%), Gaps = 10/209 (4%)

Query: 23  LGLEYPSKMDFDREIITL----HVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPM 74
            G    +  + D   + L     + S+ R+ P+     ++ A +      +         
Sbjct: 29  RGAGTLTPANVDEREMRLIRAAQIHSVSRLVPVTMSINMINATLVLVAFWDNNSRFFLLA 88

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W        A  +    K    +            +    + +GL W  + +V      P
Sbjct: 89  WFGSIGIAAALAMRSWLK-TRHNPPREASANAIRRMSAQALMLGLIWGAMPIVLFPNAEP 147

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               I     +   +S  A +   +P A     + +V+  +   ++            L 
Sbjct: 148 TDQLI-IGCLVTGMMSGGAFALSTVPRAGLAYTWSMVLGSAITLMLCTGTGYQITMIFLM 206

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDD 223
               F +       +     L  Q E + 
Sbjct: 207 LYAVFMSRNLVSHGEMFFDNLCAQFELER 235


>gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 543

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      +++AE  +  KS FLA+MSHE+RTPLNAI+GF+ ++        N 
Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DNK 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  +  + + LL LI++ILDLS+IEAG  + +   + +     + I    ++ +
Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRNYDIK-E 403

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           +K + +    D     ++ D+K + QVI N ++NA+KFT   G++ +   + +       
Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIVLEYHYKAESNEIEF 462

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  ++  V   F +      S  +G GLGL I +SI+ + GG   + S++ 
Sbjct: 463 AVTDTGMGIAPDKVNQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518

Query: 464 EGVEVIAILPNT 475
            G       P  
Sbjct: 519 NGSRFWFTHPLR 530


>gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
 gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
          Length = 857

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++   L ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487
           G      LP   V    P+   +
Sbjct: 695 GTRFEIQLPIELV--ERPDAPQQ 715


>gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
 gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
          Length = 635

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + + +        + +    ++       + ++
Sbjct: 399 EKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAW--QDKDLAPTFLNVTQTETERMI 456

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y  S   I+ +      I   ++  ++  I   + +      V 
Sbjct: 457 RLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVA 515

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QV+ N++SNA+K++  GG +  ++   +     +SIKD G GI +  +  +  
Sbjct: 516 IDQDKITQVLDNIISNAIKYSPEGGTITFSIAQHT-HEIVVSIKDQGMGIPKSNLAKIFE 574

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ I+  H G+    S+  +G  +   LP  
Sbjct: 575 RFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLPIE 627


>gi|307729618|ref|YP_003906842.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307584153|gb|ADN57551.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 657

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +E++ +  E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+ 
Sbjct: 259 DIHSEREAM-QERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVL- 316

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              M P   +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + +++   
Sbjct: 317 --DMIPDLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + + +   Q K  ++    + +   V AD   ++Q++ NL+ NA KFT  GG ++V    
Sbjct: 375 LELFRSEIQVKQQDVHVYKEATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  IS++D G GI   +I  +  +F QG   +     G+GLGL I +++   HGG 
Sbjct: 434 DERMHVQISVEDTGIGIEPDQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493

Query: 456 FLIRSKLRE--GVEVIAILPNTRVLNF-----IPEDNHES 488
              +S      G      LP            +P+  H S
Sbjct: 494 VTAQS-PGAHCGATFTITLPTAAAPASTSQAVLPDPVHPS 532


>gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 615

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    ++ F+A++SHE +TPL +I+  ++++  E +G LN++  ++ I  I      L  
Sbjct: 381 ELEKIRTDFIATISHEFKTPLTSIVMGTDILSDEGVGNLNDD-QRQIIKAIREDSDRLTK 439

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++L+L+RIE+G+        ++ DI+   +      A++++  ++ K D  +  V A
Sbjct: 440 LVNDLLELTRIESGKAIFKIKEYAIDDIIECAVKPFYQIAEQQDKTLYFKCDEDMPRVIA 499

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + +  V+ NL+SNA+K+T  G  + V          Y+++KD G GI E  I  +   
Sbjct: 500 DFEKITWVLNNLISNALKYTNAGDEISVIASVDKENTMYVTVKDTGLGIPEEYIDNIFEK 559

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F Q   A     +G GLGL + + I+  H G+    S+L  G      L
Sbjct: 560 FVQVKDAD-FEVRGTGLGLAVVKEIIEAHHGRIWCESRLDVGSSFSFTL 607


>gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1937

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 167/374 (44%), Gaps = 19/374 (5%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L +Q   +
Sbjct: 1112 AVIELASFSRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLAQSQLLTSELQSQQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +    + A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLETQAASLQQSEDLLKSQRERLQQTNEELEEKARLLEIQKKEVEGKNREVSIAK 1231

Query: 240  ----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                ++AE+ +     KS+FLA+MSHELRTPLN++L  S+++     G L++   +E+  
Sbjct: 1232 ISLEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENREGNLSD-KQREFAR 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    + L D+        +  A+E+ +    
Sbjct: 1291 TINAAGSDLLSLINDILDLSKIESGTVSLELGDVDLQDLAGHLDRSFRPLAEERQLAFTI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYIS 404
             + P+L   V  D K ++QV+ NLLSNA KFT   G V + +G           +    +
Sbjct: 1351 DVAPALPRLVRTDSKRLQQVLRNLLSNAFKFTEK-GSVALKLGSAEGSPLRAGSQWMAFT 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GI E +   +  +F Q          G GLGL I++ I    GG+ ++ S+L +
Sbjct: 1410 VTDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVLSSRLGQ 1469

Query: 465  GVEVIAILPNTRVL 478
            G      LP    L
Sbjct: 1470 GSTFTLFLPLEPPL 1483


>gi|47566186|ref|ZP_00237214.1| histidin [Bacillus cereus G9241]
 gi|47556739|gb|EAL15070.1| histidin [Bacillus cereus G9241]
          Length = 466

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +SIKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S    G  V   L
Sbjct: 444 ESAKGNGTTVSIKL 457


>gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
 gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
          Length = 1786

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 31/375 (8%)

Query: 129  PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF---------PVVVALSTQAI 179
             G+  P  + +         + +  L++F    AV + F           +   +++   
Sbjct: 1111 HGSAAPTSIVVLPVVFEEKVIGVVELASFRPFSAVHMQFLEQLAESIGVSLNAIMASSRT 1170

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
              + V    LA  L             L ++N  +     +  D    +E+     +E R
Sbjct: 1171 EELLVESQRLAAELQDKQDEGERQQVELQQTNAALEEKARQLADQNQAIEIKNLEIEEAR 1230

Query: 240  K----RAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            +    RAE+    +  KS FLA+MSHELRTPLN++L  + ++     G L N    EY  
Sbjct: 1231 RGLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLILARLLSDNVDGNL-NARQVEYSR 1289

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             IH +G  LL LIN+ILDLS++EAG+ ++  + + +  +V       +    EK+++   
Sbjct: 1290 TIHGAGTDLLQLINDILDLSKVEAGKMDVHVTDVDVTSVVEYVEATFRPLTAEKDLDFIV 1349

Query: 353  KIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------------WTSGR 399
             +DP +  +  +D+  ++QV+ NLLSNAVKFT  GG V + +               +  
Sbjct: 1350 SVDPDVPRLLRSDQHRLQQVLRNLLSNAVKFTDSGG-VRLLIRNASGERFSTRSLQQADA 1408

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                S+ D G GI   ++  +  +F Q    I     G GLGL I++ +    GG+  ++
Sbjct: 1409 VLAFSVIDTGIGIPPEKLKVIFEAFQQADGTISRKFGGTGLGLSISREVAHLIGGEIQVK 1468

Query: 460  SKLREGVEVIAILPN 474
            S+   G      +P 
Sbjct: 1469 SEPGHGSSFTLYVPR 1483


>gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1142

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/477 (22%), Positives = 186/477 (38%), Gaps = 31/477 (6%)

Query: 6   KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65
           +N+ +                 PS  +  + +++L   SL      + +  +L +   T 
Sbjct: 261 RNERQVWIAETQTALGRAMSGNPSLRELSQRVLSLLCRSLDAQ---VGVQYVLESGGSTL 317

Query: 66  FTQNPIFPMWSLITL-----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
                                +        ++++ +DI    +               + 
Sbjct: 318 RLAGSYAAGADAPATIELGQGLVGQAALEARRIIVTDIPEDSIR--------------IQ 363

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W     +           +     +  A+ + A + F       +      VA + +A  
Sbjct: 364 WGAGAALPR---QLVIFPLIHDGVVRGAIELGAFARFTPRQLELVDIVAASVAQAIEAAQ 420

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETR 239
           S   ++  L    + A            +   + L  +    +L  E  +A      +  
Sbjct: 421 SRAKIEELLEE--SRAQGEELTAQQEELRQVNETLEERTHALELQRESLLATEVALRQKA 478

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              E  +  KS FLA+MSHELRTPLN+ L  ++++       L  E  K Y   I  +G 
Sbjct: 479 TELERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNLTAEQVK-YAQSITSAGN 537

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LI++ILDLS+IEAG+ +L    I +I +        +  A E+ +E+   +DP   
Sbjct: 538 DLLALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELRIIVDPRCP 597

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD + + Q++ NLLSNAVKFT   GRV +TV     R    +++D G GIA  +  
Sbjct: 598 ETIEADGQRLHQILSNLLSNAVKFTEA-GRVRLTVEPHDERRLAFTVQDTGIGIAADQHE 656

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +F Q + +      G GLGL I++   A  GG+  +RS   EG     +LP  
Sbjct: 657 VIFQAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSAPGEGSAFTLLLPLR 713


>gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
 gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
          Length = 643

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/366 (23%), Positives = 147/366 (40%), Gaps = 10/366 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
              T +  G            + +    + +   + ++P            A       +
Sbjct: 227 AGATGLPGGHPARPGTLPADGSGVWPVAAPAQGESVLVPLDAAPFRDLPAGAWPEPPTHA 286

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           + +  +   G     L         L  ++   L   A    L A +  A+S   + R+ 
Sbjct: 287 LTLPLLRQGGTPYGFLVAGLNRYRVLDGAHRGFLELTA--GHLAAGIASARSYEAQQRRA 344

Query: 242 AE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            E  E + AK+ F + +SHELRTPL  I+G    +  +  G   +    + +  IHR+G 
Sbjct: 345 EELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRTQLAGA--DACVTDELDVIHRNGL 402

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N +LD SRIEAGR +     + L     +   + +   ++  ++          
Sbjct: 403 RLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGLDFRVDCPQLPE 462

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V+ D     +VILNLLSNA+KFT   G + VTV         +++ D G G+   E+P 
Sbjct: 463 PVYVDRGMWEKVILNLLSNALKFTFD-GSIRVTV-RAGDTHAVVTVADTGVGVPRQEMPR 520

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +   A   + +G G+GL + + ++A HGG     S   EG      LP      
Sbjct: 521 LFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFDVRLPFG--AA 578

Query: 480 FIPEDN 485
            +P+D 
Sbjct: 579 HLPQDA 584


>gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
 gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
          Length = 588

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
 gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
          Length = 619

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 143/268 (53%), Gaps = 8/268 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKMQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
             +++   E +    +N E   +Y+  I ++   L+ LIN +LD +++++G  +L+    
Sbjct: 383 AVQLLGFYEKDINKDINYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNY 442

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +++ ++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT +G
Sbjct: 443 NIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNLG 502

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + V +   SG   YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +
Sbjct: 503 GNIFVNI-IDSGDYVYIHVKDTGVGIPSDKLESIFQRFFQVDKTLKKNKEGTGIGLHLVK 561

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
           S +  H G   I S+L +G E I  LP 
Sbjct: 562 SFVEMHKGDVTIASELGKGTEFIIKLPA 589


>gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 512

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ +I GFSE +        + +    ++  IH     +  
Sbjct: 284 RLEQIRKDFVANVSHELRTPITSIKGFSETLLDGAF--NDEQMLLSFLTIIHDESNRIQV 341

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++L+LS+IE   + L      L DI+   + +   + + KN++   +I+   + +  
Sbjct: 342 LVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQD-AVILG 400

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+  NL++NA+ ++     V + +   + +     +KD G GI + EI  +   
Sbjct: 401 DVNRLMQIFTNLINNAIAYSKEETTVTLRISA-NDQYGIFEVKDEGIGIEKAEISRIFER 459

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +   A      G GLGL I + ++  H G+ +++S++ +G  +   LP  
Sbjct: 460 FYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLPLK 511


>gi|254442444|ref|ZP_05055920.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256752|gb|EDY81060.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 750

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 129/281 (45%), Gaps = 13/281 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L K     L+    K +L  + E  K    E ++ AE+ N AK  FLA +SHE+RTPLN 
Sbjct: 335 LTKELADDLAYAFFKIELEQQKEQTKKELIEAKESAEKANRAKDEFLAVISHEIRTPLNP 394

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG++ ++         +E    Y+  I R+ +  L+L++ IL  SR++ G ++   +  
Sbjct: 395 ILGYTHLLRER----HQDEQDCLYLDSIRRAAKQQLSLVDHILCYSRLDRGSFKPQLTQF 450

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLSSVWADEKGMRQVILNLLSNAVKF 382
           +L+    + +   +    + +  +         P    V  +E    +++ NLLSNA K+
Sbjct: 451 NLLQCCEDALEDTRNNTSKLDFTLINGQSQLAIPPSMIVEGEESMFLEILNNLLSNASKY 510

Query: 383 TAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G V + +G           + S+KD G GI    +  + T F Q   +     +G+
Sbjct: 511 T-KSGSVTLEIGYRGVRADKAHFFFSVKDTGIGIEPELLKRLFTPFTQADTSYTRKYKGI 569

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           GLGL I + ++    G+  + S++  G E    LP   + +
Sbjct: 570 GLGLAICKQLVDTLDGKIGVESEINVGSEFWFTLPMEIIAS 610


>gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 856

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 5/234 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS F++++SHELRTPL +I G++E++  + +     +  + Y+  IH   Q L +L+
Sbjct: 613 DRMKSEFVSTVSHELRTPLASIFGYTELMLAKDL---PVDRQQRYLTTIHSETQRLTSLV 669

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ LD+ R+E+ + +     + L ++++E             + +     P L  + ADE
Sbjct: 670 NDFLDVQRMESSQQQYQFVKLDLRNLIQEVAEFHAGSTSHHQLTLETGDRP-LRWIEADE 728

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             MRQ+  NL++NA+K++  GG +             I I D G GI +  +P + + F 
Sbjct: 729 PKMRQLFGNLINNAIKYSPDGGEIE-LKLEELEDRLRIQIIDEGIGIPQHALPELFSKFY 787

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   +      G GLGL I Q I+  H G   + S    G      LP  ++ +
Sbjct: 788 RVDNSDSRKIGGTGLGLAICQEIVRAHDGLIHVESTEGSGSIFTIELPFEQISS 841


>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 670

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 12/265 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  ++      + AE  N AKS FLA+MSHELRTP+NAI+G S +     +   
Sbjct: 258 ADITEHKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNAIIGLSYLALKTDLTT- 316

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 EYI  I  S   LL ++N+ILDL+++EA + EL+ +  +L   +     ++   
Sbjct: 317 ---QQYEYISRISESSTALLGILNDILDLTKVEANKLELARTPFNLKKELGILAAVVLPE 373

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+ K +E   +I P +  +   D   +RQV+LNL +NAVKFT   G V + V        
Sbjct: 374 AEGKGLEFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDE-GSVSLRVRVVDSTNT 432

Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     ++D G GI E EI  + + F Q   +      G GLGL I++ ++   GG   
Sbjct: 433 RVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRLVELMGGTLT 492

Query: 458 IRSKLREGVEVIAIL--PNTRVLNF 480
           + S++ +G      L  P    +  
Sbjct: 493 VGSRVNKGSTFRVELAFPLAEDVPP 517


>gi|258406426|ref|YP_003199168.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257798653|gb|ACV69590.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 479

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 13/274 (4%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVA-KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
               ++ L    +K  L  E  +A +S   + R  AEE N  KS FLA+MSHE+RTPL+ 
Sbjct: 63  RAETLQALELTNKKLQLEIEQHLATQSELKKARDLAEEANEEKSAFLAAMSHEIRTPLHV 122

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            LG   ++  E +        +  +   H +  HL  +I +ILD S+IE+G  +L E++ 
Sbjct: 123 ALGMLGIVLEEDL----PAEVQRKLRIAHDASSHLQGVIGDILDFSKIESGMLQLEETSF 178

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385
           S  ++ R  +  L+ RA EK +E+  ++  +LS     D   +RQ++ NL+ NA+KFT  
Sbjct: 179 SFKEMARLIVQCLEPRAAEKGVELSTEVAETLSGYQRGDPYRVRQILFNLVDNAIKFT-E 237

Query: 386 GGRVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            G V ++                I ++D+G GIA  ++ T+   F Q        + G G
Sbjct: 238 SGFVKLSAHLEPCGTATGTDMYAIEVQDSGAGIAPDKLQTIFERFIQLDQTQARRQSGSG 297

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL I  ++    GG   + S+  +G      LP
Sbjct: 298 LGLSICANLAEMMGGTIRVSSQEGKGSLFSVHLP 331


>gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1080

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 142/342 (41%), Gaps = 13/342 (3%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               +++   L   L++  +    L  +V ++    +  ++ +     +    +  G   
Sbjct: 155 FQQAVWRYTLLAGILAVGLML---LVRSVLIAPLGRLGGVARRVTSEENFALRAPKGADD 211

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                       L +   +      ++  L  E+    +     R+RAE E+ A + FLA
Sbjct: 212 EIGELVDSFNAMLERIEQRNRLLGEQRRRLEMEVSERTAEFVGARERAERESKAMADFLA 271

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +++HE+RTP+  I+G  ++     +        +E++  +  S   LL++IN +LD SRI
Sbjct: 272 AITHEVRTPMTGIIGLLDISLRGQL----EPRLREHLEIVRSSSHALLDVINGVLDFSRI 327

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+  +     +L + V + + + +    E+++ +   +   L   V  D   +RQV++
Sbjct: 328 EAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQVLV 387

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           N++ NA KFT   G + V +              +++D G GI       +   F Q   
Sbjct: 388 NIVGNAFKFTEQ-GEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQADA 446

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++     G GLGL IA+ ++   GG   + S    G      
Sbjct: 447 SVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFT 488


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1046

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------------RAE--EENLAK 249
           +  L +S   +   QAE +    +LE      +  R+            RAE    +  K
Sbjct: 308 SRTLQQSQANLEEQQAELEATNVQLEERTHELEAQRQYLIAARDDLLRSRAELAAASRYK 367

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHELRTPLN+ L  + ++     G LN E  K Y   IH +   LL LIN+IL
Sbjct: 368 SEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVK-YARAIHSANNDLLALINDIL 426

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           DLSRIEAG  EL +  +    +V       +  AQ+K +E+  +I P       AD + +
Sbjct: 427 DLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQFLADGQRL 486

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV+ NLL+NAVKFT   G V + +          ++ D G GIA  +   +  +F Q  
Sbjct: 487 QQVLKNLLANAVKFT-EHGSVALCIEGHGEGRIRFAVSDTGIGIAREQTEVIFEAFRQAD 545

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +      G GLGL I++ +    GG   + S+   G      LP 
Sbjct: 546 GSTSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTLELPV 591


>gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1224

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 8/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E + A+       + AE    AKS FLA+MSHE+RTP+NA LG   +++   +    +
Sbjct: 607 ISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGL----S 662

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  KEY+     +   LL +IN+ILD S+ EAG+  L +    L  ++ +   +      
Sbjct: 663 DQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASAILG 722

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           EK IE    +   +  V   D   + QV+LNL  NA+KFT  G     + +         
Sbjct: 723 EKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIALLALEEKDAT 782

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G G+   +   + T F Q   +      G GLGL I + ++   GGQ  + S
Sbjct: 783 LRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQMWVES 842

Query: 461 KLREGVEVIAI 471
           +   G     I
Sbjct: 843 EPGRGSSFSFI 853


>gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 911

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 155/414 (37%), Gaps = 14/414 (3%)

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
                WSL         +SL            E       L V  + +     +      
Sbjct: 508 SHSLFWSLCANLGAYVAVSL-----RRPPTAVEAGQA--RLFVDALKLSRPVGVALWRGR 560

Query: 130 GTWTPEYLTIYKSAT---LLIALSISALSNFMLPYAVFLS-FFPVVVALSTQAIMSMHVL 185
                    + +         A +  A  + +   A+  +    V  A S  A       
Sbjct: 561 ADSGELQTLVGRFLGPERARAAFAGYARRHGVADPAMLEADADLVHFAESQLAGAIGSAS 620

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
             ++   +A            +     ++     E +    +L            R +E 
Sbjct: 621 ARAVVASVAQEEPLSPAEVMEILDEASQLRRYSRELERKSQQLATTTRELTAANARLQEL 680

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  F++S++HELRTPL +I   SE++  +   P      + +   I    + L  L+
Sbjct: 681 DRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIP--PPERQRFHAIIVGETERLTRLV 738

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ LDL++IE+G  E   + I L  +V +         ++K + +  ++   +  + AD 
Sbjct: 739 NQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLELPQRVPPLLADR 798

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+LNLLSNA KF   GGRV V +  T      + + DNG GIA  E   +   F 
Sbjct: 799 DRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEG-LRVDVADNGKGIAPEEQQLIFERFR 857

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           QG   +     G GLGLPI++ I+ + GG+  + S    G     +LP   V  
Sbjct: 858 QGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLPRAAVGQ 911


>gi|163794230|ref|ZP_02188202.1| periplasmic sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159180398|gb|EDP64919.1| periplasmic sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 559

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 147/296 (49%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           +      L G+          +   + K N ++            +L    +      + 
Sbjct: 259 IDRTLWPLLGIGLALFGLGWLVLRRIGKVNQELREQATALHRANEQLSENAAQVRSALQS 318

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE    AKS FLA +SHELRTPL AI+GFS++++++          +EY   IH S QHL
Sbjct: 319 AEHATRAKSSFLAGISHELRTPLTAIIGFSQILKIQHRPGKTKSREQEYAEIIHDSSQHL 378

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           LNL+N+ILDLS+IE+G YEL E+ I L+        +L   A  + I +   +   L ++
Sbjct: 379 LNLVNDILDLSKIESGSYELDETWIDLVREANAVRALLAHEASRRGIAVSLDLQDQLPAL 438

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + D KG+RQ+++NL+SNA+KFT  GG V +++   S  G  + I DNG GI   E  ++ 
Sbjct: 439 YGDIKGIRQIVINLVSNALKFTDRGGWVRLSMRVESDGGLLLEISDNGAGIPTDEQSSIW 498

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +F +      S  +G GLGL + + +   H  +  + S L +G  V       RV
Sbjct: 499 EAFKRARNPGLSTAEGAGLGLHLVKILANLHDAEVGLESTLGQGTRVWVAFGPERV 554


>gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus]
 gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus]
 gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
 gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus]
 gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus]
 gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L+ Q I    +  I     +     F T     + K+   +          I   +    
Sbjct: 157 LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 216

Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           L+   +K A++ N  K     FLAS++HELRTPL  I G++++I       ++ +  K Y
Sbjct: 217 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 273

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I     H+  L+ ++ +L+++E   + ++    +L D+++  +  +Q    EKNI I
Sbjct: 274 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 333

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                  L  +  DE+   QVILNLL+NA   + +  ++ V V       Q I +KD G 
Sbjct: 334 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 391

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   +   A  G GLGL I + I+  H G   ++S+L  G     
Sbjct: 392 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 451

Query: 471 IL 472
           +L
Sbjct: 452 LL 453


>gi|331083570|ref|ZP_08332681.1| hypothetical protein HMPREF0992_01605 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403781|gb|EGG83333.1| hypothetical protein HMPREF0992_01605 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 446

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 143/317 (45%), Gaps = 11/317 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK----IL 215
              V  +   V   + +   +   +  I LA            +   + + +++     +
Sbjct: 134 VLRVAKTTDSVFHTMVSSFTLMGILFLIILALGFLLIERQTKKLIEPINRLDLEHPLKNV 193

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  +  L    E  K ++ +  +  ++    +  F A++SHEL+TPL +I G++E+++
Sbjct: 194 EYEELRPLLNRVDEQNKQIASQ-VEELKQAEAVRREFSANVSHELKTPLMSISGYAEIMK 252

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P +     E+ G I+     L +L+ +I+++S+++    E+    + + +I ++ 
Sbjct: 253 NGMVRPQD---ISEFAGRIYDEASRLTSLVQDIIEISKLDEKSGEMPFENVDIYEIAQDI 309

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              L L++++KNI +    + S   ++     + ++  NL+ NA+K+   GG V V++  
Sbjct: 310 CQNLTLQSKKKNITLSI--EGSNVEIYGVRHILYEMCYNLVDNAMKYNREGGYVKVSLST 367

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T       +++DNG GIA+ E   +   F +   +      G GLGL I +   A H  Q
Sbjct: 368 TEDH-VCFTVEDNGIGIAKEEQERIFERFYRVDKSHSRKTGGTGLGLSIVKHGAALHHAQ 426

Query: 456 FLIRSKLREGVEVIAIL 472
             + S+  +G ++    
Sbjct: 427 ITLNSEPEKGTKIQVFF 443


>gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 657

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 130/264 (49%), Gaps = 20/264 (7%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + ++      +++AEE N  KS F+++MSHE+RTPLN+I+GF+ ++E ET G   NE  K
Sbjct: 410 QQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEETRG---NENLK 466

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  +   LL LIN+ILDLSR+E+GR   +   + L+      +   Q    +  I
Sbjct: 467 EYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQILDLVPHCANIVAGFQTNIAK-GI 525

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKD 407
           ++  K          D   ++QV++NL+ NAVKFT   G + + V   +  +    S+ D
Sbjct: 526 KLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQK-GSIILEVKPNNVSQEWIFSVTD 584

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   V   F +         QG GLGL I Q  + N GG+  I  +  +G  
Sbjct: 585 TGCGIPPEKQKVVFERFNKLDE----YAQGTGLGLSICQITIENLGGRIWIDPEYTKGAR 640

Query: 468 VIAILPNTRVLNFIPEDNHESTQY 491
            +  LP            HE+T  
Sbjct: 641 FMFTLPYK----------HETTDI 654


>gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 756

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  +   +  +    E R  AEE    K  FLA+MSHE RTP+N ++G +++++   +  
Sbjct: 352 ERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMTQMLQATDL-- 409

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  + Y   I  S + LL+LIN++LDLSR+ A    L      L   VR+   +L  
Sbjct: 410 --SEDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHACVRDTARLLSS 467

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399
           +A+EK + +  +IDP +   V  D++ +RQ+++NL+ NAVKFT  G   + ++   +   
Sbjct: 468 QAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTIRLSAALSGDE 527

Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I+++D G GI   ++  +   F Q   AI     G GLGL I++ +    GG   +
Sbjct: 528 IALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIHV 587

Query: 459 RSKLREGVEVIAIL 472
            S   EG      L
Sbjct: 588 TSTPGEGSCFTLTL 601


>gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33]
          Length = 655

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 8/235 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                K  F++ +SHELRTPL ++    +++    +G L+ E  +  +G    S + L+ 
Sbjct: 416 AIERMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQQ-MLGIADDSTERLVR 474

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N +LDL RIE+G+  +   A +  +++        ++A  +  E+     P   SVWA
Sbjct: 475 LVNNVLDLQRIESGKVIMECQACNAANLM--IQAAEAMQAMAQQQEVTLVKQPQDISVWA 532

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIP 418
           D   + Q + NLLSNA+KF++ GG V +TV          +     ++D G GI   ++ 
Sbjct: 533 DADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGIPADQLE 592

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F Q   +    + G GLGL I + I+  H G+    S    G      LP
Sbjct: 593 RIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFTLP 647


>gi|228991892|ref|ZP_04151828.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
 gi|228767621|gb|EEM16248.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
          Length = 458

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 163 IFLAVLLGFIVVLSIVFIAIAARYIVRPIRIFTKATQKIANGEYDIELEEGRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              K ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    +  +  K
Sbjct: 223 TSFKKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---KMTEDERK 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L      +   +++ I ML+ + +EK+I
Sbjct: 276 RYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     +V  DE  + QV  N+ +N++KFT  GG +   V         ISI D+
Sbjct: 336 AVEFDVPS--INVRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEA-SVVISISDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G+  + S   EG   
Sbjct: 393 GIGMEQEEVERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGEISVESIRGEGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RIELPK 458


>gi|86748376|ref|YP_484872.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86571404|gb|ABD05961.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1122

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 159/358 (44%), Gaps = 10/358 (2%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            L +           +  +  +++  +  L+       ++L   P   A        +  
Sbjct: 553 VLPQRVHALLNSQVGHYLSVFMVSAGLVGLT----LMMIYLQAAPATDAQQILLSEILWK 608

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           L  +L+ ++      F         +  +           I       +     ++ AE 
Sbjct: 609 LFFALSIIIGVVTWLFVLARQSRQAAEAETRRQTTLLMQEIDAHRQTDAELQRAKEVAES 668

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            NLAKSR++  +SHELR+PLNAI G+++++E            ++ I  + RS  HL  L
Sbjct: 669 ANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ---DASLPPRPRDQIRLMRRSADHLSGL 725

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           I+ +LD+S+IEAGR  LS   +   + + + + M +L+A  K+++   K    L   V+A
Sbjct: 726 IDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVGMFRLQATAKDVDFVFKRPQYLPPVVYA 785

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQV++NLLSNA+KFT  G    +           + ++D GPGI   ++  +   
Sbjct: 786 DEKRLRQVLINLLSNAIKFTQEGSVHFIVHYRNP--VAELEVRDTGPGIHADDLERIFAP 843

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F +G++ +     G GLGL I++ +    GG   + S L +G      L  + V N  
Sbjct: 844 FERGALGVSQPHTGTGLGLTISKLLAGVMGGDLSVTSTLGQGSTFRVKLLLSEVTNPT 901


>gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1374

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 14/300 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L +    +   Q E      +L +A+++ +E  K     +  KS FLA+MSHE
Sbjct: 616 LRVTNEELEERTKALEEQQVEMQGKNDQLHLAQNVVEEKAKELASASKYKSEFLANMSHE 675

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S+++     G L N+   E    I+ SG  LL+LINE+LDLS++EAG+ 
Sbjct: 676 LRTPLNSILILSQLLASNKAGNL-NDKQIESAKAINSSGSDLLSLINEVLDLSKVEAGKV 734

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           EL    +S  +I ++   + Q  A +K +     +   L   +  D   ++Q++ NLL+N
Sbjct: 735 ELQIEDVSFQEIEQDINRLYQDIAVDKGLYFDIALAADLPNEIKTDSLRLQQILRNLLTN 794

Query: 379 AVKFTAIG----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           A KFT  G            V   +          ++KD+G GI + +   +  +F Q  
Sbjct: 795 AFKFTHEGAVTLSITQPTNEVAARMQQPKQSLVAFTVKDDGIGIKKEKQLGIFQAFQQAD 854

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            +      G GLGL I++ +    GG  L++S   +G     +LP         E+  +S
Sbjct: 855 GSTSRKYGGTGLGLSISKELTHLLGGTILLKSDEGKGCAFTVVLPLE--FQPKDEEADKS 912


>gi|325679937|ref|ZP_08159506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108375|gb|EGC02622.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 1233

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 11/264 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LIA  + AK    ++   A   + AKS FLA MSHE+RTP+NA+LG +E+I  E      
Sbjct: 683 LIAMQDEAKRQLKQSADSAIAADEAKSSFLAQMSHEIRTPINAVLGMNEMILREC----T 738

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           ++  KEY  +I  +G+ LL+LIN ILD S+IE G+ E+  +A     ++ + +  +  RA
Sbjct: 739 DDDIKEYAVNIQSAGRTLLSLINSILDFSKIEDGKMEIIPAAYGTASMINDLVTAVSARA 798

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----G 398
             K++ +    DP+L   +  D+  ++QVI NLL+NAVK+T   G V +TV         
Sbjct: 799 AAKDLTLKVNADPALPAKLIGDDMRIKQVISNLLTNAVKYTEK-GSVTLTVKAEDLTEKD 857

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y+ + D G GI E +I  +  +F +       + +G GLG+ I   ++   G +  +
Sbjct: 858 MVLYVEVADTGIGIKEEDIGALFETFRRLDEKRNRSIEGTGLGMSIVTKLLEMMGSELHV 917

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S    G      L    + +  P
Sbjct: 918 ESIYGVGSTFWFRL-KQSIADSSP 940


>gi|90413941|ref|ZP_01221926.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
 gi|90325003|gb|EAS41518.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
          Length = 908

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 21/323 (6%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE----- 220
           +   V +A    +++ M  L  +LA  +   LS        + + +   L  +++     
Sbjct: 290 TLMSVYLAAILLSMVVMCYLGTNLARRILFYLSRVIQTMSKIEEDHNAALKVKSDGNDEF 349

Query: 221 ------KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                  + L+ +   +++   + ++ AE+ N+AKS FLA+MSHE+RTPLN I+G S ++
Sbjct: 350 TVFTSKLNQLLEDRHFSQANIIKAKEEAEKANVAKSSFLANMSHEIRTPLNGIIGMSGIL 409

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    N +  EY+  I  S Q LL LIN+ILDLS+IE+G   LS    +L ++V +
Sbjct: 410 SDTEL----NPSQAEYLQTIETSSQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYD 465

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            I ++Q +A E+ + +  ++DP L + V  DE  +RQV++NL+SNAVKFT   G V +++
Sbjct: 466 TITIVQAKASEQGLNLQIQLDPELPTSVMLDEHRLRQVLMNLMSNAVKFTLQ-GSVTLSI 524

Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +T           SIKD G GI + +   V   F Q   +I     G GLGL I + ++
Sbjct: 525 TYTDIGDKKASLLFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLV 584

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
              GG   ++S+   G +    L
Sbjct: 585 ELLGGSIELKSEKGFGSDFYFSL 607


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 13/273 (4%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I     A++     +  AE  N AKS FLA+MSHELRTPLNAILG   ++    +  
Sbjct: 737  NRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTH 796

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                   +Y      + + LL L+N+ILD S+IEAG+ EL     SL +++++  ++L  
Sbjct: 797  ----RQADYATKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSS 852

Query: 342  RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             +++K +E+   IDPSL   +  D   ++QV++NL  NA+KFT   G V + +   +   
Sbjct: 853  SSRQKPVEVLFDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTER-GEVTLFIRLLAQDQ 911

Query: 401  QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            Q ++    ++D G GIA  +   + + F Q   +I     G GLGL I+Q  +   GG  
Sbjct: 912  QTVTLHFGVRDTGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTL 971

Query: 457  LIRSKLREGV--EVIAILPNTRVLNFIPEDNHE 487
             + S+  +G        LP     +  P+D  +
Sbjct: 972  QVESEPGKGSLFHFTLTLPLA-AADAHPDDQSQ 1003


>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
 gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
          Length = 962

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 8/259 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 462 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDAN----R 517

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++  S  +  +++   +        +K +E
Sbjct: 518 LVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPLVVKKRLE 577

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP +   +  D   ++QV+ NLLSNA+KFT   G +   V  +        ++D 
Sbjct: 578 LYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDT-GCIVFQVVCSDEGYLVFKVRDT 636

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    +  +   F Q    ++   QG GLGL I + +++   G   I S+   G E 
Sbjct: 637 GVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEF 696

Query: 469 IAILPNTRV--LNFIPEDN 485
              +P  R      +P  +
Sbjct: 697 GIRIPLYRASYPQTLPLPD 715


>gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 576

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E +  +   +E     E  +  KS FLA+MSHELRTPLNA++GFSE ++   +G +
Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + YIGDI  SGQHLL+LIN+ILDLS++EAG   L    + L +++   +++++ +
Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQ 408

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397
           A  + I++  + +     +  D +  +Q++ NLL+NAVKF+  GG V + V   S     
Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAG 468

Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                              +   +S+ D G GIA+ ++  +  +F Q    +    +G G
Sbjct: 469 VIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL + + +   HGG   + S    G   +  LP   
Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565


>gi|229018482|ref|ZP_04175344.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
 gi|229024738|ref|ZP_04181177.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228736581|gb|EEL87137.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228742834|gb|EEL92972.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
          Length = 443

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 148 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRTFTRATQKIASGEYDIELDENRKDEIGTLA 207

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 208 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 260

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L      L   +++ I ML+ + +EK+I
Sbjct: 261 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQMKEFHLQKQIKDVIFMLEWKWREKDI 320

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG V   V         ISI DN
Sbjct: 321 AVEFDVPD--IVINGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEKLES-SIVISISDN 377

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 378 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHQGTVSVYSTKGEGTTV 437

Query: 469 IAILPN 474
              LP 
Sbjct: 438 RVELPK 443


>gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +      RKRAEE   AK+ FL+ MSHE+RTP+NAI+G S ++   T+ PL  
Sbjct: 131 ITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLPPL-- 188

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y+EY   +  S ++LL L+N ILD +++EAG+  L E    L  ++      L ++A+
Sbjct: 189 --YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSVKAE 246

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK + I  + DP +  ++  D   + QV+ NLL NA+KFT   G V + V    G     
Sbjct: 247 EKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQ-GAVTLAVRRLHGDAEGV 305

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI + ++  +  +F Q S  I     G GLGL I Q ++A HG +  + 
Sbjct: 306 FLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKMRVE 365

Query: 460 SKLREGVEV----IAILPNTRVLNFIPEDNHESTQ 490
           S   EG          + +  V    P ++ + TQ
Sbjct: 366 SVPGEGSSFAFDVRLKIASGAVALDAPAEDLQDTQ 400


>gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 602

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 183/462 (39%), Gaps = 30/462 (6%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
           + +   +S  + + V+ +     W   +    +W   +  V  A   L    +       
Sbjct: 109 ISAAGGLSSPVAMLVVALPFEAWWIGASRRAALWGAASAVVAIALQPLSAAFLPFAGAQI 168

Query: 102 EVYVWRIWLLVGQIAIGLCWT---LLTLVEPGTWTPEYLTIYKSATLLIALSISAL-SNF 157
             + W + L      +             +          I  +  L +A     L ++ 
Sbjct: 169 AAWHWLVPLAWALTVVPRVAAFRDTAGAADRVDTGDRLEDIIDAVVLRVARHGEVLDASA 228

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF--------- 208
                + L    +        +     +    A       +    +   +          
Sbjct: 229 RARTLLKLPPELLSGTGFFDRVHLSDRVAYLSALADMRDGALSRRLELRIRLPQNGNGQG 288

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----------------KSRF 252
            + +   + +    +L+   E     +   R+  E   L                 K RF
Sbjct: 289 DNRLMADNYRPFALELVRGEEQGDVFTLVLRENDETARLREELAQANEAAAAAEVAKGRF 348

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA +SHELRTPLNAI+GFS+++  E  G   +   KEY+G +  SGQHLL ++  ILD+S
Sbjct: 349 LAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVS 408

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           RIE+G Y         ++ V  C  M++L+AQ KNI++  +I P    + AD + ++Q++
Sbjct: 409 RIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQIL 468

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NL+SNAVKFT  GG V V      G   +  ++D G GIAE +   +   F Q      
Sbjct: 469 INLVSNAVKFTPDGGDVVVGAKRI-GSRLHFWVRDTGIGIAEEDFANLGKPFMQIQNDYT 527

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +G GLGL + + ++A H G   I S   EG  V   LP 
Sbjct: 528 RRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 569


>gi|225414556|ref|ZP_03761745.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme
           DSM 15981]
 gi|225041912|gb|EEG52158.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme
           DSM 15981]
          Length = 465

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 160/364 (43%), Gaps = 20/364 (5%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             +  G+      +     T+L     SA S+ +L  AV  S     + L   A M    
Sbjct: 108 AALAEGSGYAIRRSATLGRTMLYVAMRSAHSDNVLRLAVPYSGMREYLPLLFPAAMGS-- 165

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQ-------------AEKDDLIAELEVA 231
             ++LA  +A    F + +T  L   + ++L  +              E + +       
Sbjct: 166 FMLALACSIAATERFVSSVTRPLRVISREMLKVRGDYRSLKFEPSPYPEINVIADTTMEM 225

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               +E   R E+E   +  F ++ SHEL+TP+ +I G++E++E   +   N    +++ 
Sbjct: 226 SRDVEEYLARIEKEKQIRQEFFSNASHELKTPITSIQGYAELLEGGLIRDEN--MQRDFA 283

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +    +  LIN+IL +SR+E    E+  + + +  ++ E +  L+ +A    + I 
Sbjct: 284 GRIKKEAVRMTGLINDILMISRLETKEAEVVMTDVRVSVLLEEIVGGLKPQAAAGQVFIH 343

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
               P    + A+ + MR++  NL+ NAVK+   GG+V V V  +  +     ++DNG G
Sbjct: 344 IDCQP--LMIRANAQHMRELFTNLIGNAVKYNRPGGQVWVNVRESDRQMVA-RVRDNGVG 400

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E  +  +   F +        + G GLGL I + I+  + G   + SKL EG E +  
Sbjct: 401 IPEDSLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVGYYHGTIRVESKLDEGSEFVVT 460

Query: 472 LPNT 475
           LP  
Sbjct: 461 LPME 464


>gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
 gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
          Length = 959

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +     +  + ++  +   +   A+    + L  +  + A+  + AKS FL+ MSH+
Sbjct: 402 IIAVDNPYGQDTLSVMLFRVLDEQHAAQARQ-EQLLRDALEEAKAASNAKSDFLSRMSHD 460

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G S +     +   +          I  S ++LL+LIN+ILD+S+IE G+ 
Sbjct: 461 IRTPINAIVGMSTI---GQLKIDDRNQSVNCFKKIDDSSRYLLSLINDILDMSKIENGKM 517

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
            L++    L +++     ++  ++  KNI+     + SL   +  D   M Q+++NLLSN
Sbjct: 518 ALTDEQFDLHELINSITAIVYSQSVFKNIQFEVYCEDSLQQYYLGDALRMNQILMNLLSN 577

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           ++KFT  GG + + V  +  R         + D+G G++E  +  +   F Q +      
Sbjct: 578 SLKFTPAGGMITLHVKESKRRCGYSYLAFQVTDSGKGMSEDFMKRLYQPFEQEAADTARN 637

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G GLGL I  +++    G   + S+L EG      +P   V + I ++     Q
Sbjct: 638 LTGTGLGLSIVYNLVQLMNGTINVESRLGEGTVFSIEIPFRLVEDEIWKEEQRKQQ 693


>gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf]
          Length = 615

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +    G   YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVKIK-DCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
 gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
          Length = 1276

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1018 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1077

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1078 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1137

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1138 ANGQRVIIRTALSQAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1197

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1198 LRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINSA 1257

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1258 PNEGTLVEITFPSQRVL 1274


>gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 584

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 4/234 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTP++ + G+SE I  +     + E   E    I+     +  
Sbjct: 353 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDV--ASSKEEKNELAQIIYEESLRMGR 410

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+NE+LDL+R+EAG+ +L   ++++   +   +   Q  ++E+ +E+   +D        
Sbjct: 411 LVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMVELELTVDIEHQIGEM 470

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA++ T+  G V V +  ++    Y+ +KD+G GI E ++P +   
Sbjct: 471 DPDRIEQVLTNLIDNAIRHTSNNGFVKV-LAVSNQDKLYVEVKDSGSGIPEEDLPFIFER 529

Query: 424 FGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +   +  K  +QG GLGL IA++I+  H G   ++SKL  G      +P  +
Sbjct: 530 FYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTFSFEIPIKQ 583


>gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 833

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 163/473 (34%), Gaps = 57/473 (12%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
           G +++P      +    +   D E        +F    ++ L +   +            
Sbjct: 9   GRMMAPLRW---MASRLRNRPDSEHEMSFNRLVFAFIIVIVLLLNRRSGGVDNALDVMAL 65

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +   + +  +        +              R    +      L W L         
Sbjct: 66  YIPLALGVLAHILVWPGVSRG-------------RRIFALLLDCGFLSWQL-----HLGG 107

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               L       ++           +       +     V  +T        L + L   
Sbjct: 108 EIAALFFPIYLWVIFGNGFRFGLASLFTAIPVATLCFAAVVWTTPFWRQQWHLSLGLLIG 167

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L    ++   +   L                                K AEE + AKS F
Sbjct: 168 LVILPAYAGTLIRKLSA----------------------------ATKVAEEASQAKSLF 199

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LAS+SHELRTPL AI+G + ++   ++        +E I  +  + + L +LI+ +LDLS
Sbjct: 200 LASVSHELRTPLTAIVGMTGLLRTTSLAS----DQREMIETVEVATRSLRSLIDGLLDLS 255

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           RIEAGR  +      L+ ++ +   +++ +A+E+ +     + P     +    + + + 
Sbjct: 256 RIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDIHVTPRTPLGLVGSRQHLHEA 315

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGS 428
           ++NL+ NAVKFT  GG  + V             I + D G GIA G+   +   F Q  
Sbjct: 316 LVNLVGNAVKFTQQGGVTLAVDAEPAEDGRLSLVIEVSDTGIGIAPGDQERIFEDFTQAD 375

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +I +   G GLGL I + ++A  GG   + S   +G      +P        
Sbjct: 376 ASILNRFGGTGLGLAITRRLVALMGGTISVDSAPGKGSTFRFHVPVVPASEEP 428


>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
           13855]
          Length = 720

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 134/274 (48%), Gaps = 7/274 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + N+ +L        L+ +    ++   + ++ AEE +  KS  LA+MSHE+RTPL +I
Sbjct: 434 RQFNLHLLELLGGYAALVLDRLRREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSI 493

Query: 268 LGFSEVIELETMGPLNNE------TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           +GFSE IE E              T   +   I ++G+ LL+ ++ +L+LSR+EAG+ +L
Sbjct: 494 IGFSETIEEEADLLEATPADANPSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDL 553

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +   I L ++ +  +  L  +A+E  +    +  P       D  GM+  + NL+SNA+K
Sbjct: 554 AAERIPLDELAKGLVDELHPQAEEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIK 613

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           +T  GGRV V   + +     + ++D G G+    +  V   F Q S  +    +G GLG
Sbjct: 614 YTEEGGRVRVR-SYRAEDAAVVEVEDTGIGMDADTVEHVFEPFRQASEGLNREYEGTGLG 672

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L + + ++    G   + ++   G  V   LP  
Sbjct: 673 LAVTKQVIEKMNGDIEVDTEEDAGTCVRLRLPRA 706


>gi|261253028|ref|ZP_05945601.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936419|gb|EEX92408.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 769

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 147/369 (39%), Gaps = 11/369 (2%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
              +        +   +  L  P T        Y           + L+          +
Sbjct: 100 ARAMSNDSSLNSVDDGIFDLRTPIT-NGGVPYAYVDIGFETGPINAMLAQAQKAIIGIAT 158

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              ++VAL +  + +     ++        +            S  ++       DD+ A
Sbjct: 159 VEVILVALVSFVLGTYLTRGLTRLASAVNTVGQRGPGFQLQEHSKDELGEVTKAFDDMSA 218

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +LE         R+ AE+   +KSRFLASMSHE+RTP+N +LG   ++E   +       
Sbjct: 219 KLEKDYQTLTAAREGAEQACDSKSRFLASMSHEIRTPMNGVLGILNILEETNLTN----E 274

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+ +     SG  LL++IN+ILD +R+E+    L          V   +      A  +
Sbjct: 275 QKKLVSTATESGHFLLSVINDILDFTRMESNTLILEHKPFDFRHCVESVVDTFSPAATNQ 334

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----Q 401
           N+ +   I+ S+   V  DE  ++Q++LNL+ NA+KFT   G V + V  T         
Sbjct: 335 NLILHCYIEGSVPSKVNGDENRVKQILLNLIGNAIKFTHE-GSVTIKVCATPLDNGKAKI 393

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I+D G GI++  I  +   F     +   +++G GLGL I + +     G+  + S+
Sbjct: 394 TFEIQDTGIGISQNAIDYLFDEFTMVDQSYSRSKEGSGLGLAICRRLCNLMDGEVSVISE 453

Query: 462 LREGVEVIA 470
              G   + 
Sbjct: 454 PDIGSTFVF 462


>gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 663

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 141/294 (47%), Gaps = 15/294 (5%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L  +    LS   +    I     A++     R  AE  + AKS FLA+MSHELRTPL 
Sbjct: 238 RLVINGAGELSEVVDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLT 297

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +ILGFS +I     G   + + + Y+  I  +G+ LL ++N+ILD S++EAG   LS   
Sbjct: 298 SILGFSRLI---GAGGDLSASDRGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEP 354

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKI----DPSLSSVWADEKGMRQVILNLLSNAVK 381
            S+  +      +L+ +A+ K + +  +I        + +  D   +RQV+LNLL NAVK
Sbjct: 355 FSVAALGEGATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVK 414

Query: 382 FTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           FT  G  R+ ++V         +S  + D GPG+A G+I  +   F Q   ++     G 
Sbjct: 415 FTERGNVRLSLSVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGT 474

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHESTQ 490
           GLGL I++ +M   GG+   RS    G        LP   V    P+     + 
Sbjct: 475 GLGLAISRRLMDVMGGEIGARSDGSTGSTFWFRTVLP---VAETAPDAAGRDSD 525


>gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
 gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
          Length = 448

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     S+  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ISIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 444

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 165/455 (36%), Gaps = 38/455 (8%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
             +   +  L +L  A +  W        +             ++               
Sbjct: 3   RMQNQVVFSLLLLAAAIMFLWALSAAGLLITGAAMALGILIAAAMAVLAPRFISLPLS-- 60

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
             ++     +IA G     + + E         +  + A  L               A+ 
Sbjct: 61  --KVAETAEKIAEGDLNKTIRVYEGDEVGKLAQSFNQMAQRLRGTLSLVTDEKNRMQAIL 118

Query: 165 LSFFPVVVA-------LSTQAIM--SMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
            S    V+A       +    ++  +  + + +  G     +     +     ++     
Sbjct: 119 DSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDYELDRLFRQALDSGR 178

Query: 216 SCQAEKDDLIAELEVAKSLSD----------------ETRKRAEEENLAKSRFLASMSHE 259
             + E   L  E  + +                      R++ E     ++ F+A+ SHE
Sbjct: 179 PLKQELRILTPEPRIFRVHLTPLRGPQGGVVALFRDITERRQLE---QMRTEFVANASHE 235

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL +I GF E +    +     ET + ++G I      L  L++++L L+ IE  R 
Sbjct: 236 LRTPLTSIRGFIEALRDGAINE--PETARRFLGIIEEETDRLTELVDDLLKLATIEERRN 293

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
                 + L  +V+  +     RA++K + +  ++   L  V  D+K + Q+ +NLL NA
Sbjct: 294 MFGRLPVELPGVVQRAVDTFASRARQKGVALRVELADGLPPVIGDQKLLTQMFINLLDNA 353

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G + +     +  G  + + D G GIA   +P +   F +G  A    + G G
Sbjct: 354 VKFTEK-GEITIRAAA-AEGGVEVEVLDTGAGIAPEHLPRIFERFFRGDKART--QGGTG 409

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           LGL I + I+  HGG+  + SK  +G      LP 
Sbjct: 410 LGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLPA 444


>gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1292

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +        + Y   I R+G
Sbjct: 912  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQLDH----KQRSYTESIRRAG 967

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    ++    
Sbjct: 968  SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGLLG 1027

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLLSNA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 1028 DITASGDPTRIRQILLNLLSNAIKFTER-GVVGLKLSTLGSYQGLRFEVADTGPGINADQ 1086

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 1087 KVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1146

Query: 476  RVLN 479
             V +
Sbjct: 1147 WVAS 1150


>gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 616

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  N  KS FLA+MSHE+RTPLNAILGFS +I        N E   +Y   + ++   
Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LINEILDLS+IE+G  E + + +SL  +  +       R  +  +E+  +       
Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRC-QPGVELVFEESDPSLV 362

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   + QV  NL+ NA KFTA  G +      T  +     I D G GI++ +I  +
Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAK-GSISFGYKLTE-KEIVFHIADTGSGISDDKIDKI 420

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F        +  QG GLGL I++ I+   GG+  ++SK+  G      LP
Sbjct: 421 FDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 853

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 9/272 (3%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +     +IL    +  D++ + E  +    E  + A+  N AKS FL+ MSH++RTP+NA
Sbjct: 287 IGNKRQRILMTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDMRTPMNA 346

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + + +     P +    ++ +  I  S QHLLNLINE+LD  RIE+G++ L E   
Sbjct: 347 IIGLTTIAKNH---PGDTGKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFFLEEKPF 403

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +L  ++ + + M +   Q +   +   +      ++  D + ++++ LN+LSNA+K+T  
Sbjct: 404 TLSGLIGDTLAMTRPAIQRQKHTLRVNVRQLEHETIKGDPQRIQEIFLNILSNAIKYTPD 463

Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG +  T+  +              +DNG G+++     +   F +   +  +  QG GL
Sbjct: 464 GGVITWTISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNHIQGTGL 523

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G+ IA +I     G   + S+  +G      L
Sbjct: 524 GMTIALTIARLMNGSIDVESEAGKGSRFTVTL 555


>gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 616

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  N  KS FLA+MSHE+RTPLNAILGFS +I        N E   +Y   + ++   
Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LINEILDLS+IE+G  E + + +SL  +  +       R  +  +E+  +       
Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRC-QPGVELVFEESDPSLV 362

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   + QV  NL+ NA KFTA  G +      T  +     I D G GI++ +I  +
Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAK-GSISFGYKLTE-KEIVFHIADTGSGISDDKIDKI 420

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F        +  QG GLGL I++ I+   GG+  ++SK+  G      LP
Sbjct: 421 FDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
 gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
          Length = 619

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 9/248 (3%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTPL +I G+ E +     G     T   ++  I R    
Sbjct: 366 ELRRLEKIRKDFVANVSHELRTPLTSIKGYVEALLDG--GKDEPATATAFLEIIMRQSNR 423

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  +++++L LS+IE+G+       + L  ++   + +++  A +K+  I   +      
Sbjct: 424 LNLILDDLLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWV 483

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYISIKDNGPGIA 413
           V  DE+ + QV +NLL NAVK+T   GR+ + +         T      I + D+G GI 
Sbjct: 484 VEGDEERLVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIP 543

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E + P V   F +   A      G GLGL I + I+  H GQ  +      G   +  LP
Sbjct: 544 EADRPRVFERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLP 603

Query: 474 NTRVLNFI 481
             +  +  
Sbjct: 604 VAQDSSTA 611


>gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 343

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 161/347 (46%), Gaps = 17/347 (4%)

Query: 140 YKSATLLIALSIS---ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +K   L+ A ++    ++ +F   + +  +F    ++L    ++   + +  +   + T 
Sbjct: 3   FKLLVLINAAAVGLSISIVSFYYQHDIKAAFIIFGISLIVSFVVFYFLFEKYIYRRINTI 62

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR----- 251
                 +   L K     L  +   DD I + E    + D  +++  E +  +S+     
Sbjct: 63  YKLIHNL--KLGKDLKDALG-EYVSDDPITDAER--EVRDWAKEKKSEIDKLRSQEKFRR 117

Query: 252 -FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL+++SHE +TPL AI G+ E ++   +   + E  K ++    ++   L  LI+++ +
Sbjct: 118 EFLSNISHEFKTPLFAIQGYIETLQDG-LIEEDPEMAKGFLDKASKNLDRLSYLIHDLDE 176

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMR 369
           +S++E+GR  L+     L ++++E I  L  +A+ + I+I  K    +++ V AD K ++
Sbjct: 177 ISKLESGRISLNIEKFDLSELIKETIENLDDKARSQKIDIVFKQKYQNVTFVKADRKKIQ 236

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV+ NL+ N++K+   GG   + +     +   + + D+G GI E  +P V   F +   
Sbjct: 237 QVLTNLIDNSIKYGKTGGSTDIRIFPLFEQ-VLVEVTDDGQGIEEKNLPRVFERFYRTDK 295

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +      G GLGL I + I+  H     +RS    G      L  ++
Sbjct: 296 SRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEKSK 342


>gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 586

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217
             +  +    ++  L T  I++  +L     G+++      FF  I   L KS +++   
Sbjct: 1   MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L  +     +         E+ N  KS  +A++SHELRTPLN I+G S ++   
Sbjct: 61  VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     E  +EY+  I+ S   L ++ ++I+DL +I++ R EL    I    ++ +   
Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              L A++  I+        L + ++ D   + Q++ NL+SNAVKFT  GG ++++V   
Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+KD G GI + E   V   F Q   + +   QG G+GL I++ I    GG  
Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + S++ +G      +         P +  +S +   +A
Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322


>gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1225

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   T     + T + Y   I R+G
Sbjct: 845  QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 900

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 901  AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 960

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 961  DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 1019

Query: 417  IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG+ A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 1020 KARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1079

Query: 476  RVLN 479
             V +
Sbjct: 1080 WVAS 1083


>gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 591

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+ ++SHEL+TP+ A+ GF+E +    M   +    K+++  I      L  LI +I
Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367
           L LSRIE      +   + + D++ +    +   A EKNI++   +   +  ++  D   
Sbjct: 424 LALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKNIQVTIPEKTSTPVTIETDRDK 483

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLLSNA+ +T + G+V V +         I + DNG GI   +I  V   F + 
Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-IDHEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + ++ N GG+  + S+   G      L
Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTL 587


>gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 797

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  K  F++++SHELRTPL ++     ++    +    +   K+ +     +   L+ 
Sbjct: 563 QLDRMKDEFISTVSHELRTPLTSLRAALGLVTGGALATRPD-KMKQMLQIAIANTDRLVR 621

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N+ILD+ RI +G  EL     +  D++     + Q    + N+      + +   VWA
Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRV--ESNDVRVWA 679

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q + NL+SNA+KF+   G + +T  +   +     I D GPGI +  +  +   
Sbjct: 680 DPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFER 739

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           F Q   +   A  G GLGL I +SI+A HGG+    S   +G      LP   V 
Sbjct: 740 FQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTKAVA 794


>gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 616

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE  N  KS FLA+MSHE+RTPLNAILGFS +I        N E   +Y   + ++   
Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LINEILDLS+IE+G  E + + +SL  +  +       R  +  +E+  +       
Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRC-QPGVELVFEESDPSLV 362

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPT 419
           +  D   + QV  NL+ NA KFTA G    ++ G+    +     + D G GI++ +I  
Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAKGS---ISFGYKLKEKEIVFHVADTGSGISDDKIDK 419

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F        +  QG GLGL I++ I+   GG+  ++SK+  G      LP
Sbjct: 420 IFDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 956

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 6/265 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  L    E+     E E   +     R+ A+E N  K  FLA++SHELRTPL A+LG+ 
Sbjct: 540 IGSLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWV 599

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++     G L    +   +  + R+ +    LI ++LD+SRI +G+  L    + +  +
Sbjct: 600 QMLRT---GNLPAGKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVV 656

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V   +  ++  A  K+I +   +D + S V  D + ++QV+ NLLSNAVKFT  GGRV V
Sbjct: 657 VEHALESVRPAADAKHIRLQAAVDST-SHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQV 715

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V         I++ D G GIA   +P V   F Q   +   +  G+GLGL I + ++  
Sbjct: 716 FVERR-DSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVEL 774

Query: 452 HGGQFLIRSK-LREGVEVIAILPNT 475
           HGG     S+   +G      LP +
Sbjct: 775 HGGTVSAFSEGEGKGATFTVTLPMS 799


>gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112]
          Length = 595

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +F++++SHELRTPL ++  + E +        N     +++    +    ++ +IN++L 
Sbjct: 356 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 413

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363
           LSR++ G  ++    ++L D V   +    +  +            I +++      V  
Sbjct: 414 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 473

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QVI N+++NA+K++  G  + V +   +     +SI D G GI   ++  +   
Sbjct: 474 DTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 532

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 533 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 589


>gi|187919553|ref|YP_001888584.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187717991|gb|ACD19214.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 655

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 175/454 (38%), Gaps = 27/454 (5%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS---LIT 79
               P +   D +++  L+ +             +LV+         P+F          
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVSIYWPNIPSPPLFIACFGFYAAA 60

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV--GQIAIGLCWTLLTLVEPGTWTPEYL 137
                A   + ++      ++     W I   V    +  G    +         +P+  
Sbjct: 61  NCASLALWLVNRRY----PQLVSPRGWIILHAVRGMLLYSGPGIAVWFAF----QSPQSD 112

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                  +L+ L+     +       F +  P ++  S       H  D +L  ++    
Sbjct: 113 LPLLHTVMLVTLAAGVFMSNGFDLLNFSTSIPFLLFPSIVMHFGTHTFDRTLLAIVLAFF 172

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                +    ++   + +         +AE   A+      ++ AEE +LAK+RF A+ S
Sbjct: 173 FCAINVYALSYRKLFQQVVQARVDQQYLAESLAAQ------KRVAEEASLAKTRFFAAAS 226

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           H+LR PL+AI   +  +      P+ +    E+   I  + + L  L N++LDL+R+E+G
Sbjct: 227 HDLRQPLHAIGLLAASLNDTAATPVQHAKTAEH---IVYNVEALNQLFNQVLDLARLESG 283

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
             ++      L ++        + +A  K + +     P+   V  D   + +V+ NLLS
Sbjct: 284 VTQVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTAMVVHDDPVLLERVLSNLLS 341

Query: 378 NAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           NAV++T   G + + +     + G +I ++D+G GI   E   +   F Q +   + A Q
Sbjct: 342 NAVRYT-EDGAIWLGLRRAGRQTGGFIEVRDSGIGIPAEEHARIFEEFYQVANPQRDARQ 400

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G GLGLP  + ++   GG+  +RS    G     
Sbjct: 401 GHGLGLPTVKRLVEMLGGELQLRSAPGRGSVFRF 434


>gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 556

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLA MSHE+RTP+N ++G  +++    +        +EY   I RS   L+ +IN+IL
Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLLMETELQS----DQQEYADIIRRSADALVAVINDIL 225

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           D +++E+G+ E+ E    L+  ++E   +  +    KN+E+   +D  +  V + D   +
Sbjct: 226 DFTKLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRL 285

Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFG 425
           RQV++NL+SNAVKFT  GG  V  +V   S  G     S+KD G GI   ++  +   F 
Sbjct: 286 RQVLINLVSNAVKFTDQGGVYVFASVKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFS 345

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q   ++     G GLGL I ++++   GG   +     +GV     
Sbjct: 346 QLDSSMTRKYGGTGLGLAICKTLVNMMGGDIRVDMSGEQGVTFHFT 391


>gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum
           aromaticum EbN1]
 gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase
           and response regulator domains [Aromatoleum aromaticum
           EbN1]
          Length = 1015

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 5/275 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+     ELE         R  AE  N AK  FLA +SHELR+PLNA+ G+S+V+    
Sbjct: 601 TERKRAQRELEQLLVAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVL--TA 658

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
            G     T       I R+  H   LI+++LD SRI +G+ EL+   ++L++IV   I +
Sbjct: 659 SGNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAIDL 718

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               A+ K IE+          +  D   ++Q+++NLL+NA+KFT  GG V + +     
Sbjct: 719 SWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINLLANALKFTPEGGWVELRLAQ-GE 777

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GI  G +P V   F Q   ++    QG+G+GL + ++++  HGG   +
Sbjct: 778 TSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLVELHGGAVRV 837

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            S     G      LP   V + +P ++ E+ + +
Sbjct: 838 ESAGPGCGSVFTVELPR-PVQDALPGESPEAREGR 871


>gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 870

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +      R +A + +  KS FLA+MSHE+RTPLNAI+GFS+++   +      
Sbjct: 625 IQRYKTTEEQLTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K +I  I+++   LL LIN+ILDLSRIE+G  +   +  +L  +++      QL   
Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMP 742

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                + +  + S   +  D   ++QV+ NL++NA KFT   G +             I 
Sbjct: 743 SGVRLVLKLPENSKKYLVTDNVRLQQVVNNLINNAAKFTTQ-GSITFGYTEEEPGYTSIF 801

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI+E  +  +   F +      S  QG GLGL I Q+I+    G   + SK  +
Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIIGRLNGVITVTSKEGK 857

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 858 GTRFTVRLP 866


>gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 482

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 155/330 (46%), Gaps = 14/330 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            L+   + +A+S   +  + +  I LA  +   ++    ++  + +           + +
Sbjct: 164 LLNLTFMSIAVSAAVLAIVTLFSIGLANSIVKPINNIRAVSAQMARGKFDARIKGNYRYE 223

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L         +++E  +     N  K  F++S+SHELRTPL  I G+SE +      P  
Sbjct: 224 LGELAATLNYMAEEIVR----SNQIKDDFISSISHELRTPLTGIKGWSETLTSGGFDP-- 277

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  K  IG I +    L+ L+ EILD S++++   +L    ++L ++++E ++ +  +A
Sbjct: 278 -EETKIGIGIIAKETDRLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKA 336

Query: 344 QEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           ++K+I++         + V  D   ++QV LN++ NA+KF+     +H+ +         
Sbjct: 337 EQKHIQLKLEDKTDGTAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVK 396

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + + D+G GI+E  +  V   F Q          G GLGL I+Q ++  H G+  I+S+L
Sbjct: 397 VDVIDSGIGISEEYLKKVKDRFFQV----NHQGGGTGLGLAISQQLVELHHGEMEIQSEL 452

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             G  V  ILP   + +   E+    T+ K
Sbjct: 453 GVGTTVSVILPL--LSDTQREEAAAETETK 480


>gi|153871895|ref|ZP_02000948.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152071640|gb|EDN69053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 490

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 148/264 (56%), Gaps = 17/264 (6%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            AK  +   R++AE  + +KS FL++MSHELRTPLN ILG++++++            ++
Sbjct: 7   RAKDRATAAREQAEAASRSKSEFLSNMSHELRTPLNGILGYAQILKRN---KKLTTMQRD 63

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  SG+HLL LIN+ILD+S+IEAG+ EL   +++L + +     ++++RA+EKN+ 
Sbjct: 64  GLNVIDSSGRHLLTLINDILDMSKIEAGKMELYACSLNLQNFLDNIGGVIRMRAEEKNVF 123

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------R 399
              ++   L   V  DEK +RQ+++NLL NAVKFT   G+V + V              +
Sbjct: 124 FKFEMPIPLPIGVSVDEKRLRQILINLLGNAVKFTQQ-GQVILRVTPLGSPQIKDDLQQQ 182

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D G G+ + E+  +  +F Q     K  + G GLGL I++ ++   G Q +++
Sbjct: 183 LIRFEVEDEGIGMTQEELGKIFLAFEQVGD-EKMRQAGTGLGLAISKRLVELMGSQLVVK 241

Query: 460 SKLREGV--EVIAILPNTRVLNFI 481
           S+  +G   +   +LP   V + I
Sbjct: 242 SEKNKGSNFQFEIMLPLVEVADQI 265


>gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 858

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P+++AL       +            + L+F   ++  +  +  +        D L  
Sbjct: 277 TLPLIIALGMAPEDFLKGWKRKAWIYFISWLAFGAALSILIRLAQRRSRVIDKLNDQLAE 336

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ++  AK+            + AKS FLA+MSHE+RTP+NAI+G + ++  + + P   E 
Sbjct: 337 QVSQAKA-----------ASQAKSNFLANMSHEIRTPMNAIIGLTHMLRRDKVTPAQGEK 385

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +  I  +  HLL++IN+ILDLS+IEAG+ EL     S  ++++    ++ LRAQ K
Sbjct: 386 ----LIRIAGAADHLLSVINDILDLSKIEAGKVELEAENFSPEEMLQRICSIVLLRAQAK 441

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYI 403
            IE+        + +  D   + Q +LN LSNAVKFT  G  +    V            
Sbjct: 442 GIELVVDAGELPALLNGDVTRLGQALLNYLSNAVKFTEKGSIILRGNVLKETEKDVLVRF 501

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D+G GI+  ++  + T+F Q S +I     G GLGL I++ I    GG+    S   
Sbjct: 502 EVEDSGIGISPEKLAHLFTAFEQASASISRHYGGTGLGLAISRHIAMLMGGEAGASSTPG 561

Query: 464 EGVEVIAI 471
           +G      
Sbjct: 562 KGSIFWLT 569


>gi|227015847|gb|ACP17944.1| putative multi-sensor hybrid histidine kinase [Pseudomonas
           nitroreducens]
          Length = 1215

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 8/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E E         + +AEE N AKS FLA+MSHE+RTP+NA++G  E+    +      
Sbjct: 693 VTERERLHHQLQAAKDQAEEANRAKSTFLATMSHEIRTPMNAVIGMLELALTRSGQGHWE 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +   + S + LL LI +ILD+++IE+GR  L      L ++V     +    A+
Sbjct: 753 ---REPVEVAYDSAKSLLTLIGDILDVAKIESGRLTLMPERARLRELVESIARVFDGLAR 809

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           +K +E+  +I+   +  V  D   ++Q++ NL+SNA+KFT  G  R+ V      G    
Sbjct: 810 QKGLELKVEIEADAACEVLIDPLRLKQILSNLVSNAIKFTDKGQVRIQVGGERLVGGRIA 869

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             ++++D+G GI+  +   +   F Q S    ++  G GLGL I + +    GG   + S
Sbjct: 870 LNVAVEDSGIGISTSDQAQLFEPFSQASQNSHASRGGTGLGLTICRKLAEMMGGSVCLES 929

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486
           +L  G  V   L   +VL  +PE+  
Sbjct: 930 QLGYGTRVSVSL-LLQVLEPLPEEAP 954


>gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
 gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
          Length = 1106

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+GFS+++    +    ++   +++  I RS + LL+L+N++LD +++
Sbjct: 544 NMSHEIRTPMNAIIGFSDILLDTAL----DKEQLKHLSTISRSAKSLLHLLNDVLDSAKL 599

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           + G+ EL     SL D +   +  L L+A+++N+ +   I P ++       + +RQ++ 
Sbjct: 600 DKGKLELENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILT 659

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NAVKFTA  G+V V +  ++ +     I D G G++  ++  V  +F Q   ++  
Sbjct: 660 NLIGNAVKFTAQ-GKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSR 718

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
              G GLG  I++ ++   GG+  + S+L +G      LP    ++  PE
Sbjct: 719 KYGGTGLGTTISKQLVELMGGEIEVESELGKGSIFRFTLPMQ--ISQQPE 766


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  ++RAE     + AK+ F +++SHE RTPL  +L   E +  +   PL+  T ++ + 
Sbjct: 336 EAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLS-PTQRDRLE 394

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
              R+   LL L+N +LD SRIEAGR +       +  + +E     +   +   + +  
Sbjct: 395 IAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLIV 454

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
              P   SV+ D++   +++LNLLSNA K+T   G + V V         +S+ D G GI
Sbjct: 455 NCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLA-GSITVKVQGF-DDHIELSVIDTGIGI 512

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++P +   F +   A   + +G G+GL + Q ++  HGGQ  + S L +G      L
Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTICL 572

Query: 473 PNTRVLNFIPEDN 485
           P  R  N +P +N
Sbjct: 573 P--RGCNHLPHEN 583


>gi|254427119|ref|ZP_05040826.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196193288|gb|EDX88247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 1118

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 168/375 (44%), Gaps = 12/375 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +   +     +     +     LLI +++          A+     PV  A     +   
Sbjct: 548 VGGFLPAALISQLRSRLGHFLGLLITITLIMSG----LLALVYYQIPVSDAFVQTLMADT 603

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241
                ++  +++  +++   + +       +    Q     + I   E         ++ 
Sbjct: 604 LTKVFAILIIISGVIAWLFVLAHESRVVAQEESRRQTRMLMEEIKAHEKTDLALQAAKEL 663

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR+L  +SHELR+PLNA  G+++++E     P   E  ++ IG I RS +HL
Sbjct: 664 AEAANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ---DPSIPENRRDAIGAIRRSTEHL 720

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
            +LI  +L++S+IEAGR EL  + + + +++ E + M QL+A EK I    +    +   
Sbjct: 721 SDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMFQLQAAEKGIGFEFRSKSQMPTW 780

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DEK +RQ+++NLLSNA+KFT   G V +T  +   +     I D G GI E ++  +
Sbjct: 781 VTTDEKRLRQILINLLSNAIKFTRE-GLVTLTFRYR-NQVAEFVIADTGVGIDEEDLKRI 838

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +       +  G GLGL I Q +    GG   + S   +G E    +  +R+ + 
Sbjct: 839 FRPFERVRKPGIPSVHGTGLGLTITQLLADIMGGDIQVSSVPGQGSEFRLSVMLSRLSSP 898

Query: 481 IPEDNHESTQYKCYA 495
            P    E      YA
Sbjct: 899 AP-ARQERQPVAGYA 912


>gi|39934324|ref|NP_946600.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648172|emb|CAE26692.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 1122

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 163/338 (48%), Gaps = 8/338 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L   ++S     +  + ++L       A   +    +  L  +L  ++   +S+   +  
Sbjct: 570 LTVFAVSVGLIGLSLFLIYLQVATANEAQQIELAEILWKLFFALT-IIVGVVSWLFVLAR 628

Query: 206 HLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              ++       Q +     I       +     ++ AE  NLAKSR++  +SHELR+PL
Sbjct: 629 LSRQAAEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPL 688

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI G+++++E +   P      ++ I  + RS  HL  LI+ +LD+S+IEAGR  LS  
Sbjct: 689 NAISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRD 745

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
            +   + + + + M +L+A  K+IE   K    L   V+ADEK +RQV++NLLSNA+KFT
Sbjct: 746 EVRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFT 805

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G VH  V + +     + ++D GPGI   ++  +   F +G++       G GLGL 
Sbjct: 806 QE-GSVHFIVHYRNP-VAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLT 863

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           I++ +    GG   + S   +G      L  + V N  
Sbjct: 864 ISKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNPT 901


>gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1117

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 10/241 (4%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FL++MSHE+RTP+N ILG ++ +              + I  I  +G  LL L+N+IL
Sbjct: 740 TEFLSTMSHEIRTPMNTILGMAQALS----AADLPPKQTQAIRAIEIAGGSLLTLLNDIL 795

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+IE+G   + E    +  +    + M++  A  K+I +   +   L   V      +
Sbjct: 796 DLSQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRI 855

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSF 424
           RQV++NLL NAVKFT   G + + VG  +G        + ++D G GI   ++P +   F
Sbjct: 856 RQVLVNLLGNAVKFTHQ-GSIVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRF 914

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q          GVGLGL I++ ++   GG   + + + +G      LP   V   +P+D
Sbjct: 915 TQADATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLPLRPVHTPVPQD 974

Query: 485 N 485
            
Sbjct: 975 A 975


>gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 485

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/431 (23%), Positives = 177/431 (41%), Gaps = 30/431 (6%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ-----IAIGLCWTLLTLVEPG 130
            L+ +      +  G ++ +            I   V       I IG+   L  L    
Sbjct: 48  VLMMIFSGWICIKFGFRLNDDVRFDLRAVPLIIAAFVYSQPLTLIVIGVGIGLARLTFGL 107

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ------------- 177
           +       +  +    +   ++                 ++V                  
Sbjct: 108 SDAAMAGLLNLTILGFVCAGLNLWMRRTSYRFAIKGIVTILVVNVINSLNLAVIGVVPPK 167

Query: 178 -AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             ++ +  + + L+ +L+   +          + N+++            EL+ AK   +
Sbjct: 168 HYLLDIMPIALPLSILLSLGFALILRDFQLGARQNLELKYANELLRKQADELQKAKIGLE 227

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           +  ++  E +  KS FLA+MSHELRTPLN+I+  +E+I         +E   EY   IH+
Sbjct: 228 DRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAESD---EASEEISEYGRIIHK 284

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG+ LL +IN+ILDLS++EAGR E++   + L +I     +  +  A +K I    +++ 
Sbjct: 285 SGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQKKIAFTTRLEE 344

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNG 409
           SL  S+ +D + + Q++ NLLSNA KFT   G V + +          G     ++ D G
Sbjct: 345 SLPDSIISDPQRIAQILRNLLSNAFKFTHE-GHVELDIRRAPAKGTAEGEWLVFTVSDTG 403

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+AE +   V  +F Q   +I     G GLGL I+ ++    GG   + SK  +G    
Sbjct: 404 IGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRMESKEGQGSTFS 463

Query: 470 AILPNTRVLNF 480
             LP     + 
Sbjct: 464 FYLPLKPARSH 474


>gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia pyrifoliae Ep1/96]
 gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96]
 gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia pyrifoliae DSM 12163]
          Length = 992

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 9/258 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 493 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 548

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++            +K + 
Sbjct: 549 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRLT 608

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +   +  D   ++QVI NLL+NA+KFT  GG +     +  G      ++D+
Sbjct: 609 LWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 666

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + +M    G   + S+   G + 
Sbjct: 667 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 726

Query: 469 IAILPN--TRVLNFIPED 484
           I  +P   +RV+   P D
Sbjct: 727 IVRIPLYNSRVVTLEPRD 744


>gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora ATCC BAA-2158]
          Length = 987

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 9/258 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 484 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 539

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++ +   S  +++          A +K + 
Sbjct: 540 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLAMAVKKRLT 599

Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +  +   D   ++QVI NLL+NA+KFT  GG +     +  G      ++D+
Sbjct: 600 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 657

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + +M    G   + S+   G + 
Sbjct: 658 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 717

Query: 469 IAILPN--TRVLNFIPED 484
           I  +P   +RV+   P D
Sbjct: 718 IIRIPLYNSRVVTLEPRD 735


>gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 685

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E E   +   + R  AE  +  K  F+A++SHELRTPLNAI+G+++++  +   P   
Sbjct: 283 AQEREHLLANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQLLLRDASDPARV 342

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E     +  IHR+ +    +I+++LD+SRI AG+  L+   + L+D++ + I  +QL A 
Sbjct: 343 EKG---LQVIHRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAAD 399

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K + +   +  + + V  D   ++Q+I NLL+NA+KFT   GRV VT+  +      + 
Sbjct: 400 AKELRVMPVL-GAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLT-SGDGEARLV 457

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           + D G GI E  +P V   F Q   +      G+GLGL I + ++  HGG     S   +
Sbjct: 458 VSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGEQ 517

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 518 RGATFTVTLP 527


>gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 252

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 7/229 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE--TYKEYIGDIHRSGQHLLNLI 305
           AKS FLA MSHELRTPLNAILGF++++E E     N     +KE++  I RSG+HLL LI
Sbjct: 1   AKSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELI 60

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N++L++S+IEAGR  L+ +  +LI ++     ML+L A  K + +   ID  + + ++AD
Sbjct: 61  NDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYAD 120

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRV-HVTVGW--TSGRGQYISIKDNGPGIAEGEIPTVL 421
           E+ +RQ + NLL NA+KFT  GG +  V +G            ++D GPGI   E+  + 
Sbjct: 121 EQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLF 180

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             F Q      S  QG GLGL I Q  +   GG+  + S+  +G     
Sbjct: 181 EPFSQTETGRNSQ-QGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 228


>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 1111

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 315 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + + +        +         + +S  + +    +++    ELE    L  +
Sbjct: 375 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 431

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 490

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 550

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 551 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 608

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 668 -----EEEIQATQ 675


>gi|78048722|ref|YP_364897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037152|emb|CAJ24897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1200

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++        + Y   I R+G
Sbjct: 825  QEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDL----KQRSYTESIRRAG 880

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 881  AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 940

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 941  DITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 999

Query: 417  IPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GGQ  + S+L  G   +  LP  
Sbjct: 1000 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLPLR 1059

Query: 476  RVLN 479
             V +
Sbjct: 1060 WVAS 1063


>gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1558

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 146/342 (42%), Gaps = 9/342 (2%)

Query: 143  ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL----DISLAGMLATALS 198
             T  + ++ +A +   +  A    F      ++    ++ +       + +       ++
Sbjct: 1076 LTATVPIAETARTGEAIFLANIEEFAAKYPQIANVPSLTGNCAFACIPLIVEQQTIGVMA 1135

Query: 199  FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                      +   K +    ++                 R  AE  N  K  FLA +SH
Sbjct: 1136 LSFATAQKFNEEQQKFMLTLGQQCAQAIARSQLYEAEKNARAIAESTNRIKDEFLAVLSH 1195

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN I+G+++++   T      ET K+ +  I R+ +    LI+++LD+SRI  G+
Sbjct: 1196 ELRTPLNPIMGWAKLLRTRTYK---EETIKQGLETIERNAKLQTQLIDDLLDVSRILRGK 1252

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
              L+   + L + V+  +  ++L A+ K+IEI   +      V  D   ++QVI NL+SN
Sbjct: 1253 LNLNVCLVDLRNTVQAGLETVRLAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLVSN 1312

Query: 379  AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            AVKFT   GRV V +       Q I + D G GI    +P V   F Q          G+
Sbjct: 1313 AVKFTPSEGRVDVRLEQVGRDAQ-IQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGL 1371

Query: 439  GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479
            GLGL I   ++  HGG  +  S    +G      LP  +  +
Sbjct: 1372 GLGLAIVHHLVELHGGTVVAESAGEDQGATFTVKLPLHKSAD 1413


>gi|150008612|ref|YP_001303355.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937036|gb|ABR43733.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 638

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L        +        ++ + +  F + ++ +  +       QA+K  L+ 
Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISI 405
            IE  +K   +   ++ D++ + Q + N+L NA+KFT+  G + +   + T+ +   + +
Sbjct: 515 GIEFKEKCPDTPICLYTDKERLYQALENILKNAIKFTSA-GFIEIGYEYSTNAQDVRLYV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 629

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 630 CRISLVF 636


>gi|312890080|ref|ZP_07749624.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311297612|gb|EFQ74737.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 352

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 143/345 (41%), Gaps = 10/345 (2%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +      L      ++ N+   +  +        +  +  I   ++++  +   +     
Sbjct: 5   VLVLINALAVAITISIVNYYFRHNWYDVMITFSASFVSSFIFIYYLIEKYIVAKIKIIYK 64

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLAS 255
               +   L K     +      D +    +  K  + + +   E+       +  FL++
Sbjct: 65  LIHNL--KLGKDLKDAIGDHVTSDPINDVEKDVKEWAKQKKSEIEDLKKQEQFRRDFLSN 122

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE +TPL AI G+ E ++ +   P+     K+++    ++   L  L+ ++ ++S++E
Sbjct: 123 VSHEFKTPLFAIQGYIEALQDDMDDPV---MVKQFLEKASKNVDRLSYLVKDLDEISKLE 179

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILN 374
           +G   ++     + D+++E +  L+++A +  I++           V AD + +RQV++N
Sbjct: 180 SGEIPINYVKFKINDLIKEVMESLEMKAVQHKIKLSYKDKYDEPILVTADREKIRQVLVN 239

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ N+ K+    G   + + +       + + D+G GI E  +P +   F +   +    
Sbjct: 240 LIDNSFKYGKENGNTSIRL-YDLHDQVLVEVTDDGIGIEEKYLPRLFERFFRTDSSRSRQ 298

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             G GLGL I + I+ +H     +RS    G      L   R + 
Sbjct: 299 IGGSGLGLAIVKHIIESHQQTINVRSTEGLGSTFGFTLQKARQMP 343


>gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 476

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 17/322 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-------KSNVKILSCQAEKDDLIA 226
           L    + S+ ++   L  +   +      I   +        +        + + D    
Sbjct: 161 LFIITLFSVGIMAAVLIIVFVVSTGLANSIVRPINNIRDVSAQMAQGRFDARIKGDYRYE 220

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             E+A +L+   ++     N  K  F++S+SHELRTPL +I G+SE +      P   E 
Sbjct: 221 LGELASTLNYMAQEIV-RTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP---EE 276

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K  +  I +    L+ L+ EILD S++E    +L    + L ++++E ++ +  +A+ K
Sbjct: 277 TKIGMQIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 336

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I++    + +   V  D   ++QV LN++ NA+KF+     +++++    G    IS++
Sbjct: 337 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRVKGN-IEISVQ 395

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+E  +  V   F Q          G GLGL I+Q  +  H GQ LIRS+L  G 
Sbjct: 396 DTGIGISEENLARVRDRFFQVDH----QNGGTGLGLAISQQFVERHHGQMLIRSELGAGT 451

Query: 467 EVIAILPNTRVLNFI-PEDNHE 487
            +   LP  +    + P    E
Sbjct: 452 TITVSLPALQAEPSVEPPQLSE 473


>gi|168187447|ref|ZP_02622082.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169294655|gb|EDS76788.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 779

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 4/249 (1%)

Query: 235 SDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++E +K  +E       +++F A++SHEL+TPLN IL   + ++           + +Y 
Sbjct: 506 AEENKKLLDEALSYQQLRTKFFANISHELKTPLNLILSAIQFLQSVNGDSSLRTNFNKYG 565

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  +   ++ +IN ILD+++I++G +E+     +++++V +  +        KN+E  
Sbjct: 566 DVIKENSYRMVRIINNILDITKIDSGYFEIHPENYNIVEVVEDICLYSSSYINSKNLEFI 625

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              D     +  D   + ++ILNLLSNA+KFT  GG++ V + +  G    ISIKD G G
Sbjct: 626 FDTDTEEKIIACDPHLIERIILNLLSNAIKFTNAGGKITVNM-YDKGDFIDISIKDTGIG 684

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +     +   F Q   ++   ++G G+GL + +S +  H G   + SK+  G E I  
Sbjct: 685 IPKNHQKIIFERFVQIDKSLSRNQEGSGVGLSLVKSFVDLHNGFIKLNSKVGHGSEFIIT 744

Query: 472 LPNTRVLNF 480
           LP+  + + 
Sbjct: 745 LPSVTIKDS 753


>gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 518

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TP+ +I GF+E +    M   + E  + ++  I +  + 
Sbjct: 286 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEEALEHFLTIILKESER 343

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+LDLS+IE   ++L    + + +++ E   + + +A+EK I++  +  P L  
Sbjct: 344 LQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLV- 402

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++Q+++NLL+NA+ +T   G+V         +   I +KD G GI E EIP +
Sbjct: 403 IRGDRNRLKQILINLLANALAYTPEHGQVA-VEAEEKEKEVLIHVKDTGIGIEEKEIPRI 461

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + S++  G       P 
Sbjct: 462 FERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 515


>gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC
           9343]
 gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis NCTC 9343]
 gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis 638R]
          Length = 522

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 11/252 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E++  +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS++I        N 
Sbjct: 282 VTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADNE 337

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y   +  +   LLNL N+ILDLS +EAG  ELS   + L DI  +    L +++ 
Sbjct: 338 CEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYE-LHVKSV 396

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + +      S   +  D + + QV++NL++NA+KFT++ G +H      +       
Sbjct: 397 KPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSV-GEIHFGFQKKAD-MVQFY 454

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI    + T+   FG+         QG GLGL I + ++   GG+  +RSK  E
Sbjct: 455 MSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGE 510

Query: 465 GVEVIAILPNTR 476
           G      LP  +
Sbjct: 511 GTVFYFTLPMAK 522


>gi|228984474|ref|ZP_04144651.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775177|gb|EEM23566.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 466

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 590

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 5/233 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +  F+A++SHELRTPL+ + G++E +  +     + +  +E    IH     +  
Sbjct: 350 RLDRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMRRELTEIIHDETLRMKR 407

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-EKNIEIFQKIDPSLSSVW 362
           L+N++L+L+++E+G+++L  + + L  ++R      Q  A  E ++     I      V 
Sbjct: 408 LVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLTFEVSIPDHPVMVD 467

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV  NLL NA + TA  G +   +        Y+ + D G GI E ++P +  
Sbjct: 468 GDEDRLEQVFTNLLDNAFRHTAQ-GTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A   +  G GLGL IA+ ++  H G+ L+ S L EG     +LP  
Sbjct: 526 RFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESHLGEGTTFTVVLPLA 578


>gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 617

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  + +F++++SHELRTPL ++  + E +        + +   +++         ++
Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALHDGAW--KDPKLAPKFLKVTQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357
            +IN++L LSR+++G  ++    +++ ++    +    +  ++         I +     
Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKR 489

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D     QV+ NL++NA+K++  GG +   +  T      +S+ D G GI   +I
Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   A    + G GLGL I++ ++    GQ    S   +G      LP   +
Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALPYEPL 608

Query: 478 LNF 480
              
Sbjct: 609 EEE 611


>gi|218709447|ref|YP_002417068.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218322466|emb|CAV18619.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 574

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 8/286 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                   + +     K+ L A +    +     RK AE  N AKS FLA MSHELRTPL
Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVAARKDAERANKAKSEFLAMMSHELRTPL 225

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NA +G  + ++   +    N+  +  + ++  S + LL +I+++LD S+IE+G + L+  
Sbjct: 226 NATIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +  D V   +   +  A +K + +    D P     + D   + Q++ NL+ NA+KFT
Sbjct: 282 WSNARDTVTFVLSEQKKIADDKGLSLTLTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G VHV++ +       IS++D G GI+  ++ ++ + F Q    I     G GLGL 
Sbjct: 342 -EHGHVHVSITYQHSSF-RISVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHES 488
           I + ++    G   + S+  +G +    LP  TRV N       + 
Sbjct: 400 ITKRLVELMRGHISVESEPGKGSKFEVRLPVLTRVTNNQDHAAEDK 445


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +    E   L  EL  +    +      +E +  KS F++ +SHELRTPL  I  + E+ 
Sbjct: 114 IEDITEMTRLEEELRDSYIKLENAYAELKELDSIKSEFVSMVSHELRTPLTVINSYIEMF 173

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E   +G L +   KE +  I      ++ L+N++LD+ RI + R  L +   S+ +++R 
Sbjct: 174 EDGMLGDLTD-VQKEKLQLIRSQTDTMIQLVNDMLDILRIGSRRLRLKKELSSMEELIRS 232

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            I  L   A  K   I  + + + + +  D K + QV+ NLL+NA+K+T   G++ V +G
Sbjct: 233 VIASLSRLAALKEHTITFRCERANTLIECDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLG 292

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +     +SI+DNG GI E +   +   F       KSA+ G+GLGL I + I+  HGG
Sbjct: 293 GDAEN-VLVSIRDNGIGIREEDKDRIFEKFF-VMSNEKSADIGMGLGLSITKDIVEAHGG 350

Query: 455 QFLIRSKLREGVEVIAILP 473
           +    S+  EG      LP
Sbjct: 351 RIWFESRFGEGSTFYFTLP 369


>gi|332307241|ref|YP_004435092.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174570|gb|AEE23824.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 720

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 12/276 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D ++ L+ A   ++E  ++A E N AKS FLASMSHELRTP+N + G  E+        
Sbjct: 205 RDALSSLKDAIQKAEEAEQQAVEANKAKSEFLASMSHELRTPMNGLFGMMELALDNPHKS 264

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  EY+     SG+ LL LIN++LDLS+IEAG+  +  +++ L+ ++ +   +   
Sbjct: 265 G------EYLKKAKNSGKQLLVLINDVLDLSKIEAGKLRIERTSLDLLQLLDDVTSVQSA 318

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            A+ K +      + +L   ++ D   + Q++ NLLSNA+KFT   G V++ VG      
Sbjct: 319 NARLKKLNFNYNKNTTLPSHIFGDPTRIAQIMHNLLSNAIKFTHQ-GEVNLDVGVQVKDK 377

Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           ++   IS++D G GI   ++ ++   F Q   +      G GLGL IA+ +     G   
Sbjct: 378 RFWLNISVQDTGIGIKPEKLKSIFNKFEQADHSTTRLHGGTGLGLSIAKQLTELMHGTLT 437

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            +S   EG   +  LP   V N   E+ H S    C
Sbjct: 438 AQSTENEGSCFVLTLPIE-VDNKRIENIHPSIPLHC 472


>gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
          Length = 949

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + +    G    I ++D 
Sbjct: 567 LYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLAR-DGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TIRIPL 690


>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1111

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 315 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + + +        +         + +S  + +    +++    ELE    L  +
Sbjct: 375 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 431

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 490

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 550

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 551 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 608

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 668 -----EEEIQATQ 675


>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 586

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTPL  + G++E +    +     E  K+Y+  I      L  L+N++
Sbjct: 354 RREFVANVSHELRTPLTYLQGYTEALIDGMV--KQPEEKKKYLNIILEETLRLRRLVNDL 411

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS +E G   L +  ISL  ++   I  +   A++K + I  ++   L  ++ADE  M
Sbjct: 412 LDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVNITAEL-KELPLIYADEDRM 470

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NL+ NA+++T  GG + +           + +KD GPGI E E+P +   F +  
Sbjct: 471 EQVLINLIDNALRYTENGGEIIIEASA-GTESVTVCVKDRGPGIPEDELPFIWERFYKVD 529

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN--FIPE 483
            A      G G+GL I ++I+  HGG+   ++    G      +P  + L+   +PE
Sbjct: 530 KARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFCFNIPFGKRLDNKALPE 586


>gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
 gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
          Length = 588

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|192289852|ref|YP_001990457.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192283601|gb|ACE99981.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 1122

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 8/337 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           + A+S+  +   +    + ++       +    I+      +++   + + L     ++ 
Sbjct: 572 VFAVSVGLIGLSLFLIYLQVATANEAQQIELAEILWKLFFAVTIIVGVVSWLFVLARLSR 631

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  +           I       +     ++ AE  NLAKSR++  +SHELR+PLN
Sbjct: 632 QA--AEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLN 689

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI G+++++E +   P      ++ I  + RS  HL  LI+ +LD+S+IEAGR  LS   
Sbjct: 690 AISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDE 746

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
           +   + + + + M +L+A  K+IE   K    L   V+ADEK +RQV++NLLSNA+KFT 
Sbjct: 747 VRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQ 806

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G VH  V + +     + ++D GPGI   ++  +   F +G++       G GLGL I
Sbjct: 807 E-GSVHFIVHYRNP-VAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLTI 864

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           ++ +    GG   + S   +G      L  + V N  
Sbjct: 865 SKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNPT 901


>gi|91223629|ref|ZP_01258894.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191715|gb|EAS77979.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
          Length = 584

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 6/251 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I EL+  K       K+AEE N AKS FLA+MSHE+RTP+N ++G ++++  +     
Sbjct: 188 HYITELKKTKLALQAAVKKAEESNHAKSMFLATMSHEIRTPMNGVIGMTQLLISD----N 243

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   +E++  +  SG+HL+ +INEILD S++E G+ +LSE    +  ++   +   + +
Sbjct: 244 KDPKIREHLTTLLESGEHLMVIINEILDFSKLEQGKLDLSEEEFDINQLLIPIMNAFKPQ 303

Query: 343 AQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           A +K+I++        +   +  D   +RQ++ NL+ NA+KFT+ G    V         
Sbjct: 304 ANDKSIQLVFDTKELANNLVLKGDIVRIRQIVFNLVGNAIKFTSDGMVKAVLKYDIKTEK 363

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI    + ++   F Q  I       G GLGL I + +    GG   + S
Sbjct: 364 LSFQVSDTGIGIPTARLESIFNPFEQAEIRTMHDFGGTGLGLSIVKKLCLAMGGNVTVTS 423

Query: 461 KLREGVEVIAI 471
           +L  G    A 
Sbjct: 424 ELGIGSCFTAT 434


>gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 679

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           AE E +  KS  ++++SHELRTPL++I GF+E++    + P   E  K Y+  IH   + 
Sbjct: 442 AETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKLDP---ERNKRYLQTIHDESKR 498

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +L+++ L++ R+E+G++   +    LID VRE     Q   ++  +++    +     
Sbjct: 499 LTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTRFYQASTEQHRLQLDVDENHEFL- 557

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD+  M+Q++ NLL NA+K++  GG V +++     +   +S++D G GI    +P +
Sbjct: 558 IHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHNQ-IELSVRDFGLGIPSSAMPHL 616

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + F +   +      G GLGL I + I+  H G   + S L EG     +LP
Sbjct: 617 FSKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLP 669


>gi|260587253|ref|ZP_05853166.1| two-component sensor histidine kinase [Blautia hansenii DSM 20583]
 gi|260542448|gb|EEX23017.1| two-component sensor histidine kinase [Blautia hansenii DSM 20583]
          Length = 446

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 143/316 (45%), Gaps = 11/316 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK----ILS 216
             V  +   V   + +   +   +  I LA            +   + + +++     + 
Sbjct: 135 LRVAKTTDSVFHTMVSSFTLMGILFLIILALGFLLIERQTKKLIEPINRLDLEHPLKNVE 194

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +  +  L    E  K ++ +  +  ++    +  F A++SHEL+TPL +I G++E+++ 
Sbjct: 195 YEELRPLLNRVDEQNKQIASQ-VEELKQAEAVRREFSANVSHELKTPLMSISGYAEIMKN 253

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P +     E+ G I+     L +L+ +I+++S+++    E+    + + +I ++  
Sbjct: 254 GMVRPQD---ISEFAGRIYDEASRLTSLVQDIIEISKLDEKSGEMPFENVDIYEIAQDIC 310

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L L++++KNI +    + S   ++     + ++  NL+ NA+K+   GG V V++  T
Sbjct: 311 QNLTLQSKKKNITLSI--EGSNVEIYGVRHILYEMCYNLVDNAMKYNREGGYVKVSLSTT 368

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  +++DNG GIA+ E   +   F +   +      G GLGL I +   A H  Q 
Sbjct: 369 EDH-VCFTVEDNGIGIAKEEQERIFERFYRVDKSHSRKTGGTGLGLSIVKHGAALHHAQI 427

Query: 457 LIRSKLREGVEVIAIL 472
            + S+  +G ++    
Sbjct: 428 TLNSEPEKGTKIQVFF 443


>gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1041

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+NAILGF  ++   +  P +    +++I   H S + LL +IN++LD+
Sbjct: 450 FLANMSHEIRTPMNAILGFLAIVLESSSLPAD---LRKHIVTAHGSAESLLVIINDVLDV 506

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+ ++GR EL  S   L   + + +  L + AQEK + I    D  L      D   +RQ
Sbjct: 507 SKFDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQ 566

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           VI+NL++NA+KFT  G   + V            ++ D G GI   ++  +   F Q   
Sbjct: 567 VIINLVANAIKFTEEGSITIEVKGTSGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADD 626

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +      G GLGL I + I+   GG+  + S+  +G     ++P  R 
Sbjct: 627 SSTRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFMVPLPRA 674


>gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
 gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
          Length = 588

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 895

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 25/384 (6%)

Query: 120 CWTLLTLVE-PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
            W +L +         +          LI +  +AL  F +  ++  S   + +  +   
Sbjct: 158 GWVMLAVSRESMALQQQANAQVLLGVALIVVLAAALLAFRISGSI--SMPVLSLEKTVNE 215

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + S  +   +     +   +    I                + ++    +  A     + 
Sbjct: 216 LDSGRLSSRAEVAGPSETKALARGINRLARSVAQSQEQLATKVENSTRRVVTAMDALSKK 275

Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +  E+        + AK  FLA MSHELRTPL  ++GFS ++    M    N    EY 
Sbjct: 276 NRALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVVGFSRLLNQSKM----NSKQVEYS 331

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I  + + LL+ IN +LD S++++    +      L + +   + M   +A+   +++ 
Sbjct: 332 DNITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHAYQAESTGLDLI 391

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIK 406
             ID ++  +   D   ++Q++ NLLSNAVKFT   G V + V    G        I + 
Sbjct: 392 LIIDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQ-GEVVLRVSLMKGENDDGSLSIEVI 450

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G+ E     +   F Q    I     G GLGL I + +    GG  +I S L  G 
Sbjct: 451 DSGIGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDIVINSDLGVGT 510

Query: 467 EVIAILP-----NTRVLNFIPEDN 485
            +   LP      + V+   P  +
Sbjct: 511 CMTVTLPLLATDLSFVMPVRPPSD 534


>gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1043

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K+ F++ +SHELRTPL +I G   ++    +   + E     +    ++ + L+ 
Sbjct: 792  EVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRK-DPEKADRMLDIALKNTERLVR 850

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN+ILD+ +IE+G   L+   +   D++ +    +   A    + +       +  ++A
Sbjct: 851  LINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHSTRGI--LYA 908

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   M Q + NLLSNA+KF+     V ++     G G  I ++D G GI   ++ T+   
Sbjct: 909  DRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRR-GGGLLIRVRDQGRGIPSNKLQTIFER 967

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F Q   +    + G GLGL I +SI+  HGG   + S   +G E   +LP  +  +  
Sbjct: 968  FQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFILLPRFQEEDAS 1025


>gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 559

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 162/364 (44%), Gaps = 44/364 (12%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +    +  +     +   F  +    + +      VL  +L    +    +        F
Sbjct: 184 IGAERILGYQEAEIIGQPFELIFAPEAIERGQPQQVLKQALTEGFSRENRWHIRKDGTFF 243

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE------------------NLAKS 250
            ++  I   + E  +L    ++ + +++  RK+AEEE                  N +K 
Sbjct: 244 WAHCLITPLRDENGNLRGFSKIMQDITE--RKQAEEEKEQLLLREQAARAEAEAANRSKD 301

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA +SHELRTP+ AI+G++ +++    G L+       +  I R+    + LI ++LD
Sbjct: 302 DFLAIVSHELRTPMTAIIGWAGMLQT---GALDEARASLALETIERNANLQMQLIEDLLD 358

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           +SRI  G   LS   + L++++ + I ++Q  A  K I+I  + D S+  +W D   + Q
Sbjct: 359 ISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGDSDRLLQ 418

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSG--------------------RGQYISIKDNGP 410
           V+LNLL+NA+KFT  GGR+ V +    G                        I + D G 
Sbjct: 419 VVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQVIDTGQ 478

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVI 469
           GI+   +P +   F Q   +   + +G+GLGL IA+ ++  HGG    +S+ + +G    
Sbjct: 479 GISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIGQGATFT 538

Query: 470 AILP 473
             LP
Sbjct: 539 VKLP 542


>gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2]
 gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2]
          Length = 484

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           R   EE      +S F+A++SHE+RTPL+ + G+SE +     G  + E  +E +  IH 
Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG--SPEESEELVQVIHD 289

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               +  L+ ++LDL+R+EAG  ++    + + +++        +R++E+ + +      
Sbjct: 290 ESLRMGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPD 349

Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGI 412
               +  ADE  + QV+ NLL NA + T  G +V +              I IKD G GI
Sbjct: 350 QHLLLPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGI 409

Query: 413 AEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           A  ++P +   F +   A    E +G GLGL I ++I+  HGG     S L EG E   +
Sbjct: 410 ASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAASVLGEGTEFTIL 469

Query: 472 LPNT 475
           LP +
Sbjct: 470 LPIS 473


>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1846

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 9/270 (3%)

Query: 218  QAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            QAE + L    E A    ++ R+RAE   E +  K+ F +++SHE RTPL   L   + I
Sbjct: 1157 QAEAERLQLIQEQA--AREQERQRAETLAELDRVKTLFFSNVSHEFRTPLTLSLAPLQDI 1214

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
              +   PL+     E +  +HR+   LL L+N +LD SRIEAGR E       L     E
Sbjct: 1215 LSDPTHPLD-PVQGERLELVHRNNLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLAMFTTE 1273

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               + +   +  ++++     P    V+ D +   +++LNLLSNA KFT   G + V++ 
Sbjct: 1274 LTSVFRSAIERADLQLIVDCPPLPEPVFVDRQMWEKIVLNLLSNAFKFTFK-GEIRVSLA 1332

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              +     + I+D G GIA   +P +   F Q         +G G+GL +   ++  H G
Sbjct: 1333 NNNDNCAILQIQDTGTGIAPEHLPHLFERFYQVRGIQARTHEGSGIGLALVYELVRLHSG 1392

Query: 455  QFLIRSKLREGVEVIAILPNTRVLNFIPED 484
               + S L EG      LP       +P D
Sbjct: 1393 SIEVNSTLGEGTCFTISLPFG--TEHLPSD 1420



 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 26/325 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P +  +     +        +  +L +A +    I   L       L       +L++
Sbjct: 1526 MMPRLDGVELLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVS 1585

Query: 227  ELEVAKSLSDETRKRAEEEN------LAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                  +     + R E  +        K   L+++SHEL TPL AILG++ ++      
Sbjct: 1586 ---RVNAHLQMAKLRGEALDHERMISRRKDELLSTVSHELNTPLVAILGWTRLLRGT--- 1639

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            P +     + +  I R+      LI ++LD+SRI A +  LS   + +  ++   I  + 
Sbjct: 1640 PPSQPMLTKALETIERNAALQAKLIQDLLDISRINADKLLLSLEPVEIGSLIDIAISTVA 1699

Query: 341  LRAQEKNIEIFQ-----KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              A  K I++         D S   V  D + + QV+ NLL+NA+KFT   GRV V +  
Sbjct: 1700 PLASTKGIDLIWHKTNEDGDASSVVVKGDPERLVQVMGNLLTNAIKFTPPSGRVSVELSV 1759

Query: 396  ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                    G    IS+ D G GIA   +P V   F QG     +  +G+GLGL I++ ++
Sbjct: 1760 MRDDNFADGGYAKISVIDTGIGIAAEFLPYVFERFRQGEG--TNGVKGLGLGLAISRHLI 1817

Query: 450  ANHGGQFLIRSK-LREGVEVIAILP 473
              H G   ++S+ + +G   +  LP
Sbjct: 1818 QLHQGSIYVQSQGIGKGATFVIELP 1842


>gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 714

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 5/258 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +++    AE E+        R   E     K  FLA +SHELRTPL AILG+S+++    
Sbjct: 300 SDRKRTEAEREMLLCREQAARAELERTGRLKDEFLALLSHELRTPLTAILGWSQLLR--- 356

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   ++E     +G I R+ +    L++++LD+SRI  GR  L    + L +++   +  
Sbjct: 357 LRGPSDEILGRALGTIERNARAQSKLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLES 416

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ K I +   ++ +   V  D   ++Q++ NL+SNA+KFT  GG+V V++    G
Sbjct: 417 AEPAAKAKGIRLELSVESAGEQVMGDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRR-EG 475

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +++ D G GIA   +P V   F Q   +      G+GLGL I Q ++  HGG    
Sbjct: 476 TYARLAVSDTGIGIAPEFLPYVFEQFRQADASTTREYGGLGLGLSIVQHLVELHGGTVEA 535

Query: 459 RSK-LREGVEVIAILPNT 475
            S    +G      LP +
Sbjct: 536 SSAGKDQGASFTVKLPLS 553


>gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1233

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 149/396 (37%), Gaps = 15/396 (3%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
           +        +           + + +    +  +        Y  I  S   L  +S+  
Sbjct: 432 LQEIGSNDALDPADRLAKATDLTLEMTGLDVGAILKAVGDGRYQIIAASGVALPGVSVGY 491

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +           +  P+   L     +      +   G  +  + F         +    
Sbjct: 492 IVRAEADGRDDTTLLPINPPLHVPVTVDGRDAGLLSLGSTSGTVEFSDRQRDLAERIAHW 551

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           I    + ++ L       +     +  +        SRFLA MSHE+RTP+N +LG   +
Sbjct: 552 IGIEVSRQEALDELRRAKEEAEAASEAK--------SRFLAMMSHEIRTPMNGVLGMIGL 603

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +        +  I    +S  +LL ++N+ILD S++E+GR +L E    L D++ 
Sbjct: 604 VLRSELTA----EQRSMITLAKQSADNLLMILNDILDFSKLESGRLDLEEVEFDLADVIS 659

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               +L  +A+ K ++I   ID  ++     D   +RQ+++NL+ NAVKFT   G + + 
Sbjct: 660 SVAELLSPQAEAKGLDIISFIDTRMTLARLGDPGRLRQILINLVGNAVKFTGS-GSIVIR 718

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G      + D G GI    +P +   F Q   ++     G GLGL I + +    
Sbjct: 719 LEPADGDEVRFDVIDTGIGIPADTLPLLFQEFTQADSSVSRRFGGTGLGLAICERLTRLL 778

Query: 453 GGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHE 487
           GG   + S    G     I+P      +  P  + E
Sbjct: 779 GGTISVTSTEGTGSTFSVIIPLPVSDEDAQPAADTE 814


>gi|114565156|ref|YP_752670.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114336449|gb|ABI73831.1| Hpt sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
           400]
          Length = 782

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 19/356 (5%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              L+ + SI A +  +L      S F   +    + I  +         +   +   F+
Sbjct: 165 YLVLVTSASILAFTASLLVMFWLQSLFTKPLNTLLEVIEHISNKKDYTQRVNLKSNDEFS 224

Query: 202 YITY----HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            + +     + + + +    +    +L   +        +T + A++ + AKS FLA MS
Sbjct: 225 QLAHSFNVMIGEVDARGRQLETINHELENRVSERTFELQQTLEIAKKASQAKSEFLAVMS 284

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLN I+GFS+++    +    N+     +  I+ S Q LL L+NE+LD S+ +A 
Sbjct: 285 HEIRTPLNGIVGFSDLLTSFKL----NKEVSNTVQMINESAQTLLVLLNEVLDFSKADAN 340

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLL 376
           + +L     +L D+V       ++ A +K ++    I P S  +   D   +RQ+I N +
Sbjct: 341 KMDLDIKTFNLPDLVTSTCHSHKVSAGKKGLDFEVVISPLSHENYLGDAVRVRQIINNFV 400

Query: 377 SNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           SNA+KFT   G + + V      S      ++KD G GIA  ++ ++ T F Q    I  
Sbjct: 401 SNAIKFTRQ-GAISIAVSEHMEASDTYITFTVKDTGIGIAASKLESIFTPFMQADSTITR 459

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
              G GLGL I Q ++    G++ + S L EG      +P       +P+DN  ST
Sbjct: 460 EFGGTGLGLAICQQLVVLMNGRYGVESTLDEGSHFWFSIPL------VPQDNSIST 509


>gi|294506864|ref|YP_003570922.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
 gi|294343192|emb|CBH23970.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
          Length = 352

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 143/345 (41%), Gaps = 18/345 (5%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +S   L           + A++  +        + L   +    +   ++   L     
Sbjct: 10  FVSRLGLKLGATAGLIAGLGAVAVSSASGGSAALLGLGTAVLVYAASHVWLHRRLRHLQG 69

Query: 213 KILSCQA---------------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +   +                E   L+ E+       +   +  +E    +  F+ ++S
Sbjct: 70  VLHEIRTHEFAAETPPSGPHGDELSTLLWEVYRTGQSLETEIQELKEMESYRREFIGNVS 129

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TP+ ++ GF+E +    +   +    + ++  I      L +L  ++  +++IE  
Sbjct: 130 HELKTPIFSVQGFAETLLDGALD--DESVNRTFLKKILHHANRLDSLARDLSTITKIETD 187

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
             ++S  A ++ ++    I  +++RA+EK I   Q++ P L  ++ D   +R+V++NL+ 
Sbjct: 188 ELDMSNEAFNVAELFDAAIESVEIRAEEKGIMPRQRVAPDLPQIYGDFDRLRRVLVNLVD 247

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+   GG V +    +      I + D+G GI+   +P +   F +   +    + G
Sbjct: 248 NAIKYNQDGGTVQLEAE-SQNDEVVIRVVDDGIGISPDHLPRLTERFYRVDKSRSRNQGG 306

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            GLGL I + I+A H  +  + S   EG      LP +   +  P
Sbjct: 307 TGLGLAIVKHILAAHDRELHVESAPEEGSTFYFTLPTSPQPSLQP 351


>gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 619

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   +  F++++SHELRTPL ++  + E +    +   + E    ++G +    + ++
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELASRFLGVVSDETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKID 355
            +IN++L LSR+++G  +L+   +++ ++    +    +  +       +K   I +   
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYFT 488

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRK 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 548 DLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
 gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
          Length = 572

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 9/301 (2%)

Query: 180 MSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
               +L + L    ++  AL     ++          L    +        ++A + + E
Sbjct: 134 WEGDLLTVPLEVEKVIVGALIVKVNLSEQDIDFIESQLLLVTDLICSAITHQLAINRNIE 193

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
           +RKRAEE   A   F+A ++HELRTPLN +LG +E+I    +    N + +E + ++ +S
Sbjct: 194 SRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTEL----NSSQREIVNNLSQS 249

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L  +IN++LD S+I AG  EL     SL D+      +   RA EK ++    +   
Sbjct: 250 GEFLRTIINDLLDYSKINAGMLELIPKKFSLHDLRNTIESIFTNRAIEKQLDFNISVASD 309

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +      D + + Q+ +NL+ NA+KFT   G V+V + W S +    S++D G GIAE  
Sbjct: 310 VPSHFKGDLERITQLFVNLIGNAIKFTEE-GHVNVDIEW-SDQHFVFSVEDTGVGIAESA 367

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             T+   F Q   +     +G GLGL I + ++    G   + S +  G      +P   
Sbjct: 368 YKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVGLMDGDIGVTSIVGSGTTFTISVPLQV 427

Query: 477 V 477
           V
Sbjct: 428 V 428


>gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
          Length = 754

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 174/364 (47%), Gaps = 16/364 (4%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           L W    L   G            A  + A ++ AL++  L   +     P     + +A
Sbjct: 360 LAWNAPFLSLFGIDRGAV------AEGIDAGALMALASADLCPLLAHFTPPTDDDQAVEA 413

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKS-NVKILSCQAEKDDLIAELEVAKSLSDE 237
           +         +                   K    +    + E    +  L+  +    E
Sbjct: 414 VFPNEQFVRVVRTKTVGGGWVCVAHDVSDAKIEAEQRARNERELQHTVEVLKRNREDLRE 473

Query: 238 TRKR-------AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             +R       A+E N AKS FLA+MSHELRTPLNAI GFSE+++ E  GPL ++ Y EY
Sbjct: 474 AVRRYETEKLNAQEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLGHKKYVEY 533

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I DIH SG HLLNLI++ILDLS++EAG+ +L    + L  +++E + +++++ +E ++E 
Sbjct: 534 IKDIHASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEMQMREASLEF 593

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
               D  + SVWAD + ++QVILN+LSNA KFT  GG V VT          + I D G 
Sbjct: 594 RSLTD-HIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVTIL-IADTGI 651

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+   ++  +   F         A +G GLGL +++S+M    G   + S+ R G     
Sbjct: 652 GMTPEQLEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEPRRGTVAAI 711

Query: 471 ILPN 474
            LP 
Sbjct: 712 CLPR 715


>gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 748

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 13/244 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N I+G +E++    +    NE  + YI  I  SG+ LL +IN++
Sbjct: 227 KSAFLANMSHEIRTPMNGIVGMTELLTETPL----NEEQRLYISTIRNSGEALLVIINDV 282

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S+IEA +  L      L   + E  ++LQ   ++K + +    D  L +++  D   
Sbjct: 283 LDYSKIEADKLTLHPEQFDLERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGR 342

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLT 422
           +RQ++ NL+ NAVKFTA  G V V V             +++I+D G GI   +I  +  
Sbjct: 343 IRQILTNLVGNAVKFTAQ-GHVLVRVTGVPDASAQSCDIHVAIEDTGIGIEADKIAHIFG 401

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNF 480
            F Q   A     +G GLGL I + ++   GG   + S +  G        LP       
Sbjct: 402 EFNQIEDAQNRQFEGTGLGLAITKRLITMMGGTVWVESDVGRGSCFGFRISLPTAEGPQP 461

Query: 481 IPED 484
            P D
Sbjct: 462 APPD 465


>gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909]
          Length = 586

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    +  ++ +     +++++E  + +    +        D
Sbjct: 413 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +++         ++I D G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   A K  +QG GLGL I + I+  HGG+  + S+L +G   I  LP ++ ++
Sbjct: 532 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 586


>gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus]
          Length = 2013

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 1291 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLEHVNIIKASTDSLLNLIND 1346

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            ILDLS++EAG  +LS   + L  ++ E   +    A +K +E+   +D  +   V  D+ 
Sbjct: 1347 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKF 1406

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416
             +RQV+LN++ NA+KFT   G + +                       + D G G  + E
Sbjct: 1407 RIRQVLLNVVGNAIKFT-EHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAE 1465

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +   F Q   +      G GLGL I+   +  HGG+   RS   +G      +
Sbjct: 1466 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1521


>gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 618

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +F++++SHELRTPL ++  + E +        N     +++    +    ++ +IN++L 
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 436

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363
           LSR++ G  ++    ++L D V   +    +  +            I +++      V  
Sbjct: 437 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 496

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QVI N+++NA+K++  G  + V +   +     +SI D G GI   ++  +   
Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 555

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A   A+ G GLGL IA+ I+  H G+    S   +G      LP   +   
Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612


>gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 586

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217
             +  +    ++  L T  I++  +L     G+++      FF  I   L KS +++   
Sbjct: 1   MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L  +     +         E+ N  KS  +A++SHELRTPLN I+G S ++   
Sbjct: 61  VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     E  +EY+  I+ S   L ++ ++I+DL +I++ R EL    I    ++ +   
Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              L A++  I+        L + ++ D   + Q++ NL+SNAVKFT  GG ++++V   
Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+KD G GI + E   V   F Q   + +   QG G+GL I++ I    GG  
Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + S++ +G      +         P +  +S +   +A
Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322


>gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1808

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 17/269 (6%)

Query: 232  KSLSDETRKRA-----------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            +  +++ R+R            E  N  K  FLA +SHELR+PLN ILG++++++     
Sbjct: 1408 RKQAEQERQRLLEQEQAARAEAERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFD 1467

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            P       E +  I R+ +    LI+++LD+++I  G+  ++   + L  ++   I  ++
Sbjct: 1468 PT---KTNEALATIERNAKLQTQLIDDLLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMR 1524

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              A  K + +   + P +  V  D   ++Q++ NLLSNA+KFT   G V V +    G  
Sbjct: 1525 TAAVAKEMTLHAVL-PQIGRVSGDSARLQQIVWNLLSNAIKFTPAKGVVEVRLER-EGDR 1582

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I+I D G GI    +P +  SF Q   +      G+GLGL I + ++  HGG     S
Sbjct: 1583 AKITISDTGKGINPDFLPHLFESFRQEDASTTRQYGGLGLGLAIVRHLVEAHGGTIRAES 1642

Query: 461  K-LREGVEVIAILPNTRVLNFIPEDNHES 488
                +G   I   P     +  P     S
Sbjct: 1643 PGEGQGATFIVQFPLLNAESEQPTSETAS 1671


>gi|157828187|ref|YP_001494429.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932889|ref|YP_001649678.1| sensory transduction protein kinase [Rickettsia rickettsii str.
           Iowa]
 gi|157800668|gb|ABV75921.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907976|gb|ABY72272.1| sensory transduction protein kinase [Rickettsia rickettsii str.
           Iowa]
          Length = 497

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++R  +I+++
Sbjct: 299 --DEEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 PRADQAAVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|299065947|emb|CBJ37128.1| sensor hybrid histidine kinase [Ralstonia solanacearum CMR15]
          Length = 603

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79
            LGL   + ++ D     L          I    VL V  +  ++          W LI 
Sbjct: 3   KLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDTGNRLALAGWCLIM 62

Query: 80  LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L + A       G +   + + +      W   + +     GL W     +   + + E+
Sbjct: 63  LCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAGLYLVSPSLEF 122

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195
            ++     ++I ++  A+ +     +  L     ++               + +  +L  
Sbjct: 123 SSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFVLAEQAFPEHGLYVRCVLLF 180

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +F      ++  + V+ +  + E   L      A+   DE ++RA   +  KSRFLA+
Sbjct: 181 FAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 233

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SH+LR P++A++   E +         +ET    +  +    Q +  L   +LDLS++E
Sbjct: 234 ASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLFRSLLDLSKLE 289

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           + +   +   + L +++ E +      A+ K + + Q+I P      A+   +R+ + NL
Sbjct: 290 SRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEPVLLRRSLFNL 349

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L NA+++T+ GG  V + V     +   I + D G GIA      + +S+ Q     +  
Sbjct: 350 LQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSYYQVENPERDP 406

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            QG+GLGL I +  +    G   +RS    G      L         P      ++ K
Sbjct: 407 SQGLGLGLAIYKECVRLLRGTHGVRSVPGRGSMFWMALRPVPAEIKAPLAAQPRSEQK 464


>gi|288942192|ref|YP_003444432.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897564|gb|ADC63400.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 691

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  +  L   +    +   E R +AE  N AKS FLA+MSHE+RTPLNAILG + ++ 
Sbjct: 143 ELEGYRSHLEELVAERTAQLSEARAQAETANQAKSAFLANMSHEIRTPLNAILGLTYLLI 202

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                  ++E  ++ +  I  S  HLL++IN+ILD+S+IEAG++ L     S  D+  + 
Sbjct: 203 R---DQSSSERSRDILTKIEHSANHLLSIINDILDVSKIEAGKFTLHTQDFSTKDLFEQL 259

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             ++  +   K +   + ID     +  D+  +RQ +LN LSNA+KFT   G + +    
Sbjct: 260 DSLVLGQVAAKRLRFIRCIDALPPLLHGDQACLRQALLNYLSNAIKFTKA-GEIKLVAEI 318

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        + D G GIA  ++  +   F Q   ++    +G GLGL I   +   
Sbjct: 319 LDETATDLLVRFDVYDTGIGIAPADLAQLFRPFSQVDNSVARRFEGTGLGLVITHRLAQL 378

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG+    S++ +G      
Sbjct: 379 MGGETGAESQVGQGSRFWIT 398


>gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1023

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 167/483 (34%), Gaps = 31/483 (6%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----------QNPI 71
             L  P        +    + S  R    +P+     A  GT +                
Sbjct: 240 RPLATPDLPAARAALGERGILSGGRDYRGVPVLAYAAAVEGTPWLMLAEIDEREAYSGIR 299

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ------IAIGLCWTLLT 125
              W +  +      L      +       +     +            I       ++ 
Sbjct: 300 TLTWGMGVVMALGLMLVYSGGYLVWRRDREQRERATLQARQIAEARFRVIFEQAPLGVVL 359

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHV 184
           L        E    + +        +  +    L            +  L    I    +
Sbjct: 360 LDPRTRRITEANPRFAAIVGRSVGELVGVDPIALTHPDDVAESLRQLGRLDAGRIAGYRL 419

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
               L            +    +  ++          +D+ A +E+ +    E    A  
Sbjct: 420 NKRYLRPDGTPVWVSLAFAPVQV--ASEDAPRYLGIVEDISARIEM-EERLREASAAAAA 476

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FLA MSHE+RTP+NA+LG ++V+E E + P      ++ +G I  +G  LL +
Sbjct: 477 ANAAKSEFLAHMSHEIRTPMNAVLGLAQVLEREPLAP----AQRDMVGRIRGAGASLLAI 532

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++++LDLS+IEAG+  +      L  ++     ++   A+ K + +  +        +  
Sbjct: 533 LDDVLDLSKIEAGQLRIEPRPFDLRALLANLDSLMGQAARAKGLALRIEPPALPPGQLRG 592

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPT 419
           D   + Q+++NL+SNA+KFT   G V + V         +     ++D G GIA      
Sbjct: 593 DGLRIEQILINLVSNAIKFTER-GEVSLRVRADEVGDVRLRLRAEVRDTGIGIAPEAQAR 651

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q    I     G GLGL I + ++   GG   + S+   G      LP  RV  
Sbjct: 652 LFAPFTQADAGIARRFGGTGLGLSICKRLVELMGGAIGVHSQPGLGSTFWFELPLERVAG 711

Query: 480 FIP 482
             P
Sbjct: 712 GEP 714


>gi|78048724|ref|YP_364899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037154|emb|CAJ24899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1191

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 142/261 (54%), Gaps = 11/261 (4%)

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +     L+   R+ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y   I  +G+HLL L+N+ LDL+RIEAG+  L      L  +V + + +++  A++K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 347  NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402
             +    ++D +L  ++  D   ++Q++LNLL NAVKFT   G VH+ +        +G  
Sbjct: 905  QLAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRLTTLPQYTRQGLR 963

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D GPG++  +   +   F Q   A+  +   G GLGL I + + A  GG   + S+
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSE 1023

Query: 462  LREGVEVIAILPNTRVLNFIP 482
            L +G   +  LP   V + +P
Sbjct: 1024 LGQGACFVVELPLHWV-STLP 1043


>gi|148254922|ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407095|gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. BTAi1]
          Length = 729

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 132/318 (41%), Gaps = 12/318 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               I S   +      ++    +   +    + +  +           +   +   ++ 
Sbjct: 266 GISRIYSFRRVKDQPLVVVVGQATDEVFSAIRVDRGLMVGTLLTVIIGIITILIARYQAG 325

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              +R  AE    A+S FLA MSHE+RTP+N ++G         +        ++    +
Sbjct: 326 LAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGL----ADLLLSADLAPEQRKIATTL 381

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S  +LL L+N++LD S+++A R E+      L   V     +L  RA+EK +++   I
Sbjct: 382 RESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQLTTSI 441

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410
            P +   V  D   +RQV+ NL+ NA+KFT  G   + V     +G       S+ D G 
Sbjct: 442 APDVPNYVVGDPARLRQVLFNLVGNALKFTEAGSVNIDVRAENLAGPNLTLVFSVADTGV 501

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +  +   F Q   +I     G GLGL I + ++   GG   ++SK+ EG     
Sbjct: 502 GIPAEAVGRLFRQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKIGEGSTFTF 561

Query: 471 ILPNTRVLNFIPEDNHES 488
            +     +   P+ + E 
Sbjct: 562 SI----EVQPQPQPDVEQ 575


>gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 969

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   T     + T + Y   I R+G
Sbjct: 589 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 644

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
            HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 645 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 704

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
             +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 705 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 763

Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 764 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 823

Query: 476 RVLN 479
            V +
Sbjct: 824 WVAS 827


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/482 (19%), Positives = 167/482 (34%), Gaps = 29/482 (6%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
              +S   D       +++    +        L R +  + +  +  +            
Sbjct: 163 ATKLSQRADEYVSGLVAELRSKTQHRLAQQAHLTRRTNTIAIVTVAASLGFALMLAVAFA 222

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIK---IGEVYVWRIWLLVGQIAIGLCWTLLT---- 125
                    +     + G+  +          E+            AI     L      
Sbjct: 223 RSLVARLHGLAKVVRAFGEGELTRRTHERSPDELGELGRVFDRMADAIQAQDGLRLSKKY 282

Query: 126 ----------LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
                      +           + ++   L+A   S L          +       A  
Sbjct: 283 VDDVLDTMTNALVVLDEDAIIEKVNRATCRLLACDESELVGARAERIFGMFSEATGAATP 342

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                                +    +    +       + C  E    I E +   +  
Sbjct: 343 VPWAEEHMQDAEIALFTRQGEVRMVAFSGATMRDEGDAKIVCMLED---ITERKRLIAEL 399

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E +  AE    AK+ FLA+MSHELRTPLNAILG+++++  +       E  ++ +  + 
Sbjct: 400 IEAKGAAESATKAKTAFLANMSHELRTPLNAILGYAQMLGDDD---NLTEQQRDALTTMR 456

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG+HL  L+ ++LD+S+IE+ R EL+ S   L   +   +   ++RA+ K +    +I 
Sbjct: 457 TSGEHLATLLEDLLDISKIESDRMELAPSEFELTRFLDGLVAPFRMRAESKELHFGYEIS 516

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             L   V ADE+ +RQV++NLL NA+KFT   G V               ++D G GI  
Sbjct: 517 GDLPGMVRADERRLRQVLINLLGNAIKFTER-GSVTFRANM-HDGKVRFQVEDTGRGIPG 574

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AIL 472
             +  +   F Q     +   +G GLGL I++ ++    G   + S L  G        L
Sbjct: 575 DAMEDIFAPFRQAGQPEQ-QVEGTGLGLAISKRLVELMDGSIGVESVLGRGSVFWAEVAL 633

Query: 473 PN 474
           P 
Sbjct: 634 PA 635


>gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
 gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 134/311 (43%), Gaps = 8/311 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLI 225
              +   +        H+    +   LA     F     ++ +  + K LS   E     
Sbjct: 122 LATIQPYVEVPHWQHDHLCLPLMVERLAAGHLVFATHPDNIERDFIVKQLSLVGELLCSA 181

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              ++     DE+RKRAEE   A   F+A ++HELRTPLN +LG +E++   ++ P    
Sbjct: 182 LSRQLIMKRQDESRKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDTSLDP---- 237

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               Y+ ++  SG  L  +IN++LD S++ AG  +L  +     D+      +   +A+E
Sbjct: 238 EQLSYLTNLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKARE 297

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K IE          + W  D + + Q+++NL+ NA+KFT   G V V   W       + 
Sbjct: 298 KKIEFVVNTRGEFPTYWIGDVERINQILVNLVGNAIKFTHR-GAVTVAARWV-DERLLLR 355

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI      T+   F Q   +     +G GLGL I ++++    G     S   E
Sbjct: 356 ISDTGIGIPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGE 415

Query: 465 GVEVIAILPNT 475
           G E    +P  
Sbjct: 416 GTEFFVSIPLQ 426


>gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1358

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 35/321 (10%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---------------------A 242
           T  L +S  ++ + Q E      EL+      ++ RK                       
Sbjct: 608 TRALKQSEAELQAQQEELRVANEELQQRTGALEKQRKEISTKNIELLDAQKIVEGKVDEL 667

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     KS FLA+MSHELRTPLN+IL  S+++     G L+++   E  G IH SG  LL
Sbjct: 668 ETSGKYKSEFLANMSHELRTPLNSILILSQLLSTNKAGNLSDKQV-ESAGAIHSSGAELL 726

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           NLIN+ILDLS++EAG+ EL    I    I  +   + +  A +K I     ++P L  ++
Sbjct: 727 NLINDILDLSKVEAGKVELIIEEIPFKRIEADLHRLYKDLAHDKGISFDITLNPQLPQTL 786

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVH-------VTVGWTSGRGQYISIKDNGPG 411
             D + ++QV+ NL++N+ KFT  G     +        +       +    ++KD+G G
Sbjct: 787 KTDSQRLQQVLRNLITNSFKFTLQGSVSLEIEPAPAEQLLNTRLEGQKAIVFAVKDDGIG 846

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + +   +  +F Q   +      G GLGL I++ +    GG   + S   EG      
Sbjct: 847 IPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSISKELTKLLGGFITLSSVEDEGSTFRIT 906

Query: 472 LPN--TRVLNFIPEDNHESTQ 490
           LP     +    PE+  E+  
Sbjct: 907 LPLNNQAIATDTPEEKLETED 927


>gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 419

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL   + L D  R+ A   +  KS F+A+MSHE+RTPLNAI+GFS ++        + 
Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMA----TATSE 222

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+I+AG      S     D++RE   +  +R  
Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKGLFGMRLN 282

Query: 345 EKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           E  +  +  +       + ++++ + QV+ NLL NA+KFT   G +              
Sbjct: 283 ENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCHMEGTDEVCF 341

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI E E   + + F +         QG GLGL ++Q I+ N GG+  + S++ 
Sbjct: 342 YVSDTGIGIPEEEQEKIFSRFTKLD----REMQGTGLGLTLSQIIVHNLGGRCGVESEVG 397

Query: 464 EGVEVIAILPN 474
           +G     ILP 
Sbjct: 398 KGSTFWFILPL 408


>gi|254481247|ref|ZP_05094492.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214038410|gb|EEB79072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 642

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 8/355 (2%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L    P  +  +   I+     L  L   +LS     +  F+    +V  +S +   ++
Sbjct: 120 FLEYATPIIFDEKQQGIFSLRIDLAGLQSRSLSLLGAVFISFILSIFLVYGMSRKLQKAV 179

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                 LA           Y      ++  ++       + ++  +E     S+      
Sbjct: 180 TKPIDKLANAFNDVSINKNYSLRLKNQTADELGKLADGFNSMLEVIEKRDRESENLVHDL 239

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +    AKS FLA+MSHE+RTPLN I+G + +++  T    +++  + Y   I  S   LL
Sbjct: 240 KAATAAKSAFLANMSHEIRTPLNGIIGITSLLDQTT----DDKKRRAYYTTIENSANALL 295

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            +IN+ILDLSRIEAGR+E  ES   L ++      + +  A+EK I     + P     +
Sbjct: 296 LIINDILDLSRIEAGRFEPDESNFKLDEVANHVRRVFEPSAKEKGIAFEAVLAPRTPLDL 355

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIP 418
             D + + QVI+NL+ N +KFT  G   V ++           +  + D+G GI      
Sbjct: 356 TGDSRRLTQVIINLVGNGLKFTEEGAVSVAISAEDVSLDSATLHFQVFDSGIGITAEAQK 415

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F Q   +I     G GLGL +++ ++   GG+  ++S+  EG      +P
Sbjct: 416 NIFDDFSQVDGSITRRFGGTGLGLSVSKKLVELLGGEIGVQSRSGEGSRFWLKVP 470


>gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1557

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 147/361 (40%), Gaps = 18/361 (4%)

Query: 120  CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
             W    L                    I L+         P    +       A +   +
Sbjct: 1069 AWETFPLTATVPIAETAR-----TGEAIFLANVTEFAAKYPQIANVPSLTGNCAFACIPL 1123

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +        +A   ATA  F         K  + +    A+        E  K+     R
Sbjct: 1124 IVEQQTIGVMALSFATAQKF----NEEQQKFMLTLGQQCAQAIARSQLYEAEKN----AR 1175

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              AE  N  K  FLA +SHELRTPLN I+G+++++   T      ET K+ +  I R+ +
Sbjct: 1176 AVAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTYK---EETIKQGLETIERNAK 1232

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
                LI+++LD+SRI  G+  L+   + L + V+  +  ++L A+ K+I I   +     
Sbjct: 1233 LQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIAIHTILSDEPV 1292

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             V  D   ++QVI NL+SNAVKFT   GRV V +       Q I + D G GI    +P 
Sbjct: 1293 QVMGDGDRLQQVIWNLVSNAVKFTPSEGRVEVRLEQVGRDAQ-IQVIDTGKGITPEFLPY 1351

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVL 478
            V   F Q          G+GLGL I   ++  HGG  + +S    +G      LP  +  
Sbjct: 1352 VFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAQSAGEDQGATFTVKLPLHKSA 1411

Query: 479  N 479
            +
Sbjct: 1412 D 1412


>gi|58696692|ref|ZP_00372242.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698386|ref|ZP_00373299.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630987|ref|YP_002727778.1| sensor histidine kinase [Wolbachia sp. wRi]
 gi|58535099|gb|EAL59185.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537134|gb|EAL60244.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592968|gb|ACN95987.1| sensor histidine kinase [Wolbachia sp. wRi]
          Length = 475

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 3/257 (1%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                  ++A+         + ++  E+EN  K +F AS++HELRTPLNAI+GF+E+I+ 
Sbjct: 208 LHFSNTKMLAKQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKN 267

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           ET+G +++  YKEY  DI+ +G HLL LIN++LD S+ E+    + +   +L  I+  C+
Sbjct: 268 ETLGSMDDSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCV 327

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ML  + +E  I + +++      V AD K M+QVI+NLLSN++KFT   G + + +   
Sbjct: 328 NMLLPKLKEAGINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKEN 387

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I   DNG GI + +I  V++ FGQ     ++  +G G+GLP+++ ++   GG 
Sbjct: 388 IEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGT 445

Query: 456 FLIRSKLREGVEVIAIL 472
           F I+S+ + G  +    
Sbjct: 446 FDIKSEAKLGTTITLNF 462


>gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
 gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
          Length = 883

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 103/262 (39%), Positives = 148/262 (56%), Gaps = 7/262 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +      A  D ++  L   K LSD+        N AKSRFLA+MSHELRTPLNAI+GF
Sbjct: 627 EIATSLRHAISDMMLRHLRHVKELSDQ----LAASNEAKSRFLANMSHELRTPLNAIIGF 682

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++     G L     ++Y+  IH SG+HLL ++N++LDLSRIEAGR ELS  ++    
Sbjct: 683 SDLMMSGMAGTL-PPRIQDYVQSIHASGEHLLRMVNDVLDLSRIEAGRMELSPESLDAGI 741

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +  EC+ ML  RA    + +  + +  L  + AD   +RQ++LN++ NAVKFT  GGRV 
Sbjct: 742 LAAECVGMLLPRAVRGEVLLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVD 800

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V     +G G   +++D GPG+   E+ T +  F Q +     A +G GLGLPIA+S++ 
Sbjct: 801 VRARALAGGGAVFTVRDTGPGMTPEEVLTAMEPFRQVAQTRA-AVEGTGLGLPIAKSLVD 859

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
            H G   I +    G  V   +
Sbjct: 860 LHAGNLAIETAPGLGTTVTIEI 881


>gi|152994244|ref|YP_001339079.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835168|gb|ABR69144.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 781

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 11/265 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +  +D L  ++        + ++ AE+ NLAKS+FLA+MSHE++TPLN ILG  E+++
Sbjct: 254 ELRYHRDQLQEQVSRRTRRLQDAKETAEKANLAKSQFLATMSHEIKTPLNGILGMVELLQ 313

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +     ++E     +  I++SG+ LL ++N +LD +R+E G Y       S+ ++V   
Sbjct: 314 SQPQSSQSHEK----LSAIYQSGEALLEILNGLLDYARLEEGMYSPEILPFSISELVNST 369

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            ++   +AQ++N ++  +I   L          +RQ++ NL+SNA+KFT   G V ++V 
Sbjct: 370 SLLFLAQAQQQNTQLNVQISDQLQDRYQGAVGALRQILSNLVSNAIKFT-RDGSVTISVM 428

Query: 395 WTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                     G  I ++D G GI +  +  +   F Q   ++     G GLGL I   ++
Sbjct: 429 PAEENPEQSSGVLIEVEDTGMGIPDRYLSHIFERFSQADESVTRQFGGTGLGLAITAQLV 488

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
               G+  + S+   G      +P 
Sbjct: 489 RLLEGEMGVESEEGRGSVFWFYVPL 513


>gi|160880960|ref|YP_001559928.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160429626|gb|ABX43189.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 467

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 159/314 (50%), Gaps = 9/314 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +F  F  + ++++  A++++ V+   L   +   L    YI  +  + N ++       D
Sbjct: 154 LFWLFPSIFISITVSAVLAV-VMADKLTNTITKPLQQIAYIMVNYKEENPELSLPSTPYD 212

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAK---SRFLASMSHELRTPLNAILGFSEVIELETM 279
           +L    + A+ +SD  +K  EE    +     F ++ SHEL+TP+ +I G++E++    +
Sbjct: 213 ELNIIAQSAQKMSDSVKKYTEEIEFERMVRQEFFSNASHELKTPITSIRGYTELLLGGFI 272

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              +  T +E++  I    + + NLIN+IL +SR+E   YE+  + I +  ++++ I  L
Sbjct: 273 --NDEATSEEFMKRILAETESMTNLINDILLISRLETRDYEIETTEIRMAMLLQDIIKTL 330

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A ++ +E+     P    V A+++ +R+++LNL+ NA+K+    G V+VT+  T GR
Sbjct: 331 EPIAAKQEVELQTVCKP--VIVRANKQHLRELLLNLIGNAIKYNKPNGMVYVTIT-TIGR 387

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KD G GI +  +  V   F +          G GLGL I + I+  +GG   + 
Sbjct: 388 DLLIEVKDTGIGIPKDSLVRVFERFYRVDKGRSRKVDGTGLGLSIVKHIVNYYGGNITLD 447

Query: 460 SKLREGVEVIAILP 473
           SK+  G      LP
Sbjct: 448 SKINVGSTFTVRLP 461


>gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 585

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 29/309 (9%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + +  ++ + L    +    F     Y + +     LS              A     E 
Sbjct: 286 LRTHWIMALVLLFTASAYCGFLIVRAYFVVRKKTFELSD-------------AAKELSEA 332

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-----LNNETYKEYIGD 293
             R +E +  KS F+ S+SHELRTP+ +I+GF ++I  +           NE  K+    
Sbjct: 333 NVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNEKLKKKTER 392

Query: 294 IHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           I          G+ L  LIN++LD ++IE+GR +  +    + D++   +  ++ +    
Sbjct: 393 IMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVSTIKGQL-PI 451

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            +++    D S   V AD   + QV++NLLSNAVKFT   G V V+   +      +++K
Sbjct: 452 GVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFT-SNGYVSVSYESSLSNILTVTVK 510

Query: 407 DNGPGIAEGEIPTVLTSFGQG--SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           D G GI +G++  V   F Q       +S  +G GLGL I + ++ ++GG+  + S+L +
Sbjct: 511 DTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGKIWVESELGK 570

Query: 465 GVEVIAILP 473
           G       P
Sbjct: 571 GSFFKFTFP 579


>gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 692

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 11/297 (3%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A     ++     +   +    + I     E+  L A  +  ++   +    A+  N AK
Sbjct: 107 AMTAVFSIVVSILLGAAII--TLTIYFNLMERKRLTALSKR-EADLRDALVLAQNANNAK 163

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             FL+ MSHE+RTP+N I+G +  I    +        ++ +  I  S +HLL+LIN++L
Sbjct: 164 KEFLSRMSHEIRTPMNGIIGMT-TIAGNYLDDRT--RVEDCLAKIAFSSRHLLSLINDVL 220

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGM 368
           D+S+IE G+  ++     L   +   I ++ L+A+E  +     +   +  +   D   +
Sbjct: 221 DMSKIEEGKLAINREPFKLQPFLESVISIVWLQAKEHGLAFETALADITADTFIGDSMRI 280

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            Q++LNLLSNA+KFT  GG V + V       +      SI D G G++E  +  +   F
Sbjct: 281 NQILLNLLSNALKFTLKGGTVRLQVKQFILKNNEVRLRFSISDTGIGMSEEFLSRLFIPF 340

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            Q    I     G GLG+ I ++++   GG   ++S   +G  +   LP       +
Sbjct: 341 EQAPSTISKKYGGTGLGMAITKNLVNLLGGTIHVKSSPGKGTTITVELPVEIEKEAV 397


>gi|325293768|ref|YP_004279632.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061621|gb|ADY65312.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1154

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 7/351 (1%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            +A +I+  +   +   +         A +     ++ ++    A +      F      
Sbjct: 597 GMAAAIAVTAIGGILALIAHQVGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHD 656

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  +           IA  +   +   + ++ AE  N AKSR++  +SHELRTPLN
Sbjct: 657 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLN 716

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG+++++E +   P      +  I  I RS  HL  LI+ +LD+S+IEAGR ++  + 
Sbjct: 717 AVLGYAQILERDETIPAP---RQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNE 773

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           I++ D + + + M + +AQ K +E   +   SL   V  DEK +RQ+++NLLSNA+KFT 
Sbjct: 774 INIQDFLDQIVDMFRPQAQAKGLEFRHERAHSLPQYVRTDEKRLRQILVNLLSNAIKFTD 833

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   V +   +    ++ D G GIAE ++  +   F +G         G+GLGL I
Sbjct: 834 E-GSVTFDVAYR-SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTI 891

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + +    GG+  + S+   G      L  + V         E T  + Y+
Sbjct: 892 TRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKT-IRSYS 941


>gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 860

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/300 (31%), Positives = 155/300 (51%), Gaps = 6/300 (2%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           +L ++     +  ++ F  +TY L +        +  KD L   ++   +     R  AE
Sbjct: 344 LLSVTALRTESGQITGFVGLTYDLTERKQAENELRRHKDQLEETVQQRTADLLLARDAAE 403

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AK  FLA MSHELRTPLN ILG++++++ + +     E     +  I +S ++L  
Sbjct: 404 AANKAKGLFLAHMSHELRTPLNGILGYAQILQRDELVG---ERKAAALNIIRQSSEYLRA 460

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           LI++ILDLSRIE GR +   S ISL   +R    ++ LRA++K +E   ++   L + + 
Sbjct: 461 LIDDILDLSRIETGRLDFVLSNISLAKFLRGVTDIVGLRARQKGLEFSCELAADLPAGIR 520

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE+ +RQV+LNLL+NAVKFT   G+V + VG         +++D G GI + E+  +  
Sbjct: 521 CDERRLRQVLLNLLTNAVKFT-DSGQVVLRVGRVGPSRFSFAVEDTGIGIEQNELELIFR 579

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q    ++    G GLGL I++ +M   G   ++ S++ +G      +      +  P
Sbjct: 580 PFEQVGD-LQRRLGGTGLGLAISRQLMRYLGSDIVVESRVGKGSTFRFEVELQAASSSTP 638


>gi|294505916|ref|YP_003569974.1| sensory transduction histidine kinase [Salinibacter ruber M8]
 gi|294342244|emb|CBH23022.1| sensory transduction histidine kinase [Salinibacter ruber M8]
          Length = 1106

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 148/306 (48%), Gaps = 9/306 (2%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKS-NVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +  ++ A M    +      ++  F + N++++        ++ +    +    E ++
Sbjct: 808  GGLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAKE 867

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             AE+ N  KS FLA+MSHE+RTPL +I+GF+E I  E  G   + T   + G I + G+ 
Sbjct: 868  TAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGRR 925

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            LL  ++ +L+LS++EA   EL+ + +++ +   +   + + +A++  I++   +      
Sbjct: 926  LLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPLW 985

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              ADE  +R V+ NL+SNAVK+T  GGRV +       +   + ++D G G+    + T+
Sbjct: 986  ARADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAEDQ-AVLEVEDTGQGMDPAAVSTL 1044

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              +F Q S       +G GLGL + +  +    G   + ++   G   +  LP       
Sbjct: 1045 FEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLPR-----P 1099

Query: 481  IPEDNH 486
             P++  
Sbjct: 1100 APDETD 1105


>gi|78048723|ref|YP_364898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037153|emb|CAJ24898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1177

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 228  LEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                + +  + R++ AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    N  
Sbjct: 788  RRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL----NAK 843

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + Y+  I ++G HLL L+N+ LDL+RIEAG+ EL +       + +E    +   A  +
Sbjct: 844  QRGYVDAICKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPIADAR 903

Query: 347  NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + +  +   P    V  D   +RQ+++NLL NA+KF    G V +TV    G      +
Sbjct: 904  GLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAER-GEVSLTVSQ-HGDALRFKV 961

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +D GPGI   +   +   F QG  A   S   G GLGL I Q +     G+  +RS+L  
Sbjct: 962  RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1021

Query: 465  GVEVIAILPN 474
            G +    LP 
Sbjct: 1022 GTQFTVDLPL 1031


>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus 10329]
          Length = 1128

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W L+  +           + K   + + ++I  +       + F++   + +  + +
Sbjct: 332 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  + + +        +         + +S  + +    +++    ELE    L  +
Sbjct: 392 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  +  K  FLA+ SHELRTPL+ ++G +E +     G +   + K  +  I +S
Sbjct: 449 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L NL++++LD  ++  G  ++ +SA+SL    R  + +       K I I  ++   
Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L +V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++   GG   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684

Query: 478 LNFIPEDNHESTQ 490
                E+  ++TQ
Sbjct: 685 -----EEEIQATQ 692


>gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
 gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
          Length = 938

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 143/268 (53%), Gaps = 8/268 (2%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L A   +  ++     ++AE  + AKS FL+ MSHE+RTP+NAI+G +E++ +E+     
Sbjct: 539 LTARGRMRSAIMQAELEKAEARSTAKSDFLSKMSHEIRTPMNAIVGMTELVSMESG---L 595

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +   ++ +  I  S ++LL+LIN+ILD+SRIE+G   ++E A SL +I+ E   ++  +A
Sbjct: 596 SPETRDKLEKIRSSSRYLLSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQA 655

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           Q++ + +    +     +  D   +RQV+LNLL N+VKFT  GG + ++V      GQ  
Sbjct: 656 QQRGLALECVRNIDCDWLTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQACGMEGQEA 715

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S++D G GI+  +   +   F Q          G GLGLPI+++++ + GG+  + 
Sbjct: 716 VYDFSVRDTGVGISHEDQERIFRPFEQLGGNEL-KSLGTGLGLPISRNLVRSMGGELTLE 774

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S   +G      L           ++ E
Sbjct: 775 SDTGKGAVFSFRLRFKPAGEAPAHEDRE 802


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1152

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 147/295 (49%), Gaps = 20/295 (6%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259
           + +   +    Q E       LE A +  + + K+AE+        N AKS+FLA+MSHE
Sbjct: 463 VMRDVTERRQAQQELLAAKERLEEANAQLEASIKQAEQLANEAFVANNAKSQFLANMSHE 522

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N I+G + ++    +    +     ++  + +S   L+ +IN+ILD S++EAG+ 
Sbjct: 523 IRTPMNGIIGMAALLLDTPL----DGQQTVFVQTVRKSAHALVTIINDILDFSKVEAGKL 578

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378
           EL E+  SL   +     +L ++A EK +E    + P +  ++  D   +RQV++N++ N
Sbjct: 579 ELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVPDALIGDSIRLRQVLVNIVGN 638

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           AVKFT   G V + +   +          SIKD G G+ E +I TV  +F Q   ++   
Sbjct: 639 AVKFTDA-GEVSLEISMAAMDDARCTLLFSIKDTGAGLPEDKIETVFEAFAQADSSVTRK 697

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             G GLGL I+QS++   GG+ +  ++   G         +  L       HES+
Sbjct: 698 FGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFT--ASFALQEQ-GAEHESS 749


>gi|91787248|ref|YP_548200.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91696473|gb|ABE43302.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1197

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 193/465 (41%), Gaps = 45/465 (9%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           +    + I      + A +  W T+   +   S  T    A      ++       I E 
Sbjct: 498 ARAFSAVIAMGTAFVTAPLIAWATRGRYYIARSSGTSEADA----SYQRYATQQCVICER 553

Query: 104 YVWRIWLLVGQIAIG------------------------LCWTLLTLVEPGTWTPEYLTI 139
                 +       G                          W+             YL  
Sbjct: 554 AYEGPDMAHCPAYQGPICSLCCTLDARCGDLCKPQASLSAQWSAALRWLLPHRIWPYLDT 613

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALS 198
                LL+ L I  L   +           +    LS  A+ S  +       ++A  ++
Sbjct: 614 GLGHFLLLMLIIVPLLASVFGLLYHQEMGALGDFMLSGSALRSGFLKAYMALLVIAGLVA 673

Query: 199 FFTYITYHLFKSNVKILSCQAEKD-DLIAELEV-------AKSLSDETRKRAEEENLAKS 250
           ++  + +   +   +  + Q       I            AK  ++  R  A++ N AKS
Sbjct: 674 WWLVLAHKSRQVAQEESNRQTHLLMREIELHRQTDEALQLAKLHAEHARHAADQANQAKS 733

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           R+++++SHELRTPLN+ILG+++++  +   P      K+ +  I R G+HLL+LI   LD
Sbjct: 734 RYISAISHELRTPLNSILGYAQLMGEDAAIP---PHRKQAVSVIRRGGEHLLSLIEGTLD 790

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
           ++RIEAG+  L+   +   D V E   M +L+A  K +    +   +L   V ADEK +R
Sbjct: 791 IARIEAGKLTLTVKPMQFADCVHEMAGMFELQAAAKGLGFRFETAGNLPELVRADEKRVR 850

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLL NA+KFTA  G+V   +   +    YI I+D GPG++E E+  +   F +G+ 
Sbjct: 851 QILINLLGNAIKFTAQ-GQVIFRL-RHAREMAYIDIEDTGPGMSEAELAQIFEPFARGAA 908

Query: 430 AIKSAEQ--GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A  SAE   G GLGL IA+ +    GG+  + S   +G      L
Sbjct: 909 AGHSAEGTPGAGLGLTIAKMLTDLMGGEMTVLSTPGQGSVFRVRL 953


>gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 613

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 6/260 (2%)

Query: 217 CQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +     +I E E         E   R +E +  KS F++++SHE RTPL ++     ++
Sbjct: 349 YRISTKQVIDEDEEYQFTVTLLEDITRLKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMV 408

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             E  G L NE   E +   +   + L  L+N++LDLS+IE+G+ E+    + + DI+ +
Sbjct: 409 INEDTGEL-NEEQHELLEAAYEDVERLTELVNDLLDLSKIESGKIEMEFDKVDVNDIIEK 467

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +     +A+EK+IE+  K        +AD   +  VI NL+ NA+++    G++ V   
Sbjct: 468 TLNPFFKQAEEKDIELKFKQSEENVFAYADPSKISWVISNLIGNALRYAEQ-GKIEVDAE 526

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              GR   +S+ DNGPGI +     +   F +     +  + G GLGL IA+ I+  H G
Sbjct: 527 I-KGRRVLVSVADNGPGIPKEYQAKIFEKFVRTGN-DQDEKSGTGLGLAIAKEIITAHNG 584

Query: 455 QFLIRSKLREGVEVIAILPN 474
           +    S+  EG      +P 
Sbjct: 585 RIWFDSEEGEGSTFSFYIPR 604


>gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
 gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
          Length = 779

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 7/271 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            + K  +          D +      +S  ++    AE+   ++ RFLA+MSHELRTP+ 
Sbjct: 175 RVTKRTIPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPIA 234

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +++G  E++  E     ++   K  +     S ++L  L+N+ILD S++++    L E  
Sbjct: 235 SMIGLLELLSYENRNIADDYKLKSLM----SSAKNLQLLVNDILDYSKLDSQGISLVEEF 290

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +S  D++ + + + +  A+E+ +    + D   +  +  D   + Q++ N+LSNAVKFT 
Sbjct: 291 VSYTDLLGDLVRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFTE 350

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G++ VTV  T      I + D G GI+  ++ ++   F Q   +I+    G GLGL I
Sbjct: 351 Q-GKIKVTVRATKQNISII-VDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLAI 408

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + +     G   I S   EG  V+  LP  
Sbjct: 409 VKKLTTLMSGYISINSTEGEGTSVMISLPLK 439


>gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
 gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
          Length = 1248

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 17/322 (5%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L  A           L    +     +   L G++        Y    L K  +  L   
Sbjct: 652 LTAATTQLVQTEDCTLIHSFLGIPLFMHDQLIGLVVVTNCESGYSQQTLQK--LDPLLST 709

Query: 219 AEKDDLIAELEVAKSLSDETRKR----AEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
             +       E  +    +  ++    A++ ++AKS FLA+MSHE+RTPLN ++GF +++
Sbjct: 710 TSRLLSAYRKEQERLALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLL 769

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    + T K+Y+  + +SG  LL +IN+ILD S+IEAG+ EL    + L  +   
Sbjct: 770 LQTNL----DATQKQYLDIVSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDG 825

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              ++  + ++K +E+   +   L    W DE  ++QV+ NLLSNAVKFT+  G +   V
Sbjct: 826 LRDLMIYQTKQKGLEMILSLAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSK-GTIEFKV 884

Query: 394 GWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                           +KD G GI       +  +F Q   +      G GLGL I+  +
Sbjct: 885 TMLQKESNQKALLRFLVKDTGVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRL 944

Query: 449 MANHGGQFLIRSKLREGVEVIA 470
           +A    +  + S   +G     
Sbjct: 945 LALMDSRLCLESTHGKGSTFYF 966


>gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
 gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
          Length = 713

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             D+   +E  + L D  R  AE  N AKS FLA MSHE+RTP+N I+G +EV+    + 
Sbjct: 189 ARDITETVEYQRKLVD-ARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTAL- 246

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +  + Y+  I  SG+ LL +IN++LD SRIEA R  +  +   L  + +E +++LQ
Sbjct: 247 ---TQDQRLYVDTIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQ 303

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A +K +++    D  L   +  D   +RQV+ NL+ NAVKFT   G + +        
Sbjct: 304 PLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFT-QNGHILIRATGLPDA 362

Query: 400 G-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           G       I I+D G GIA   I  ++  F Q S       +G GLGL I Q ++   GG
Sbjct: 363 GSGNVLIKILIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGG 422

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481
           +  + S+   G      LP     +  
Sbjct: 423 EIWVTSEHGIGSCFGFELPLKAQEDSA 449


>gi|301309590|ref|ZP_07215532.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300832679|gb|EFK63307.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 638

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 149/307 (48%), Gaps = 15/307 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P    L        +        ++ + +  F + ++ +  +       QA+K  L+ 
Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E       E  ++A E +  KS FLA+MSHE+RTPLNAI+GFS +I    +     E 
Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y   I  + + LL L+N+ILDL+RIE+G     + + +L D+V+           E 
Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISI 405
            IE  +K   +   +++D++ + Q + N+L NA+KFT+  G + +   + T+ +   + +
Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSTNAQDVRLYV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI+  +   +   F +         QG GLGL I Q+I+    G+ L++S+  +G
Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629

Query: 466 VEVIAIL 472
             +  + 
Sbjct: 630 CRISLVF 636


>gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 608

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 4/229 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL ++  + E +    +   ++E    +I       + ++ L+N++L L
Sbjct: 380 FVANVSHELRTPLTSMKSYLEALADGAI--NDSEVAPRFIHVTQTETERMIRLVNDLLQL 437

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQ 370
           S++++  Y ++   I+L   + + I   ++  + ++I   +++   +   V+ D   + Q
Sbjct: 438 SKMDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQ 497

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ N+LSNAVK++  GG +  ++   +     +SIKD G GI +  IP V   F +   A
Sbjct: 498 LLDNILSNAVKYSPEGGTILCSLKI-AKDNVIVSIKDEGVGIPKENIPYVFDRFYRVDKA 556

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                 G GLGL IA+ I+  HGG   + S    G  +   LP    +N
Sbjct: 557 RSRNLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLPFDEAVN 605


>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya zeae Ech1591]
 gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 955

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 6/249 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 453 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDAN----R 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++  S  +  +++   +        +K +E
Sbjct: 509 LVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLPLVVKKRLE 568

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP++   +  D   ++QV+ NLLSNA+KFT   G +   V  +        ++D 
Sbjct: 569 LYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDT-GCIVFQVACSDEGYLVFKVRDT 627

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    +  +   F Q    ++   QG GLGL I + +++   G   I S+   G E 
Sbjct: 628 GVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEF 687

Query: 469 IAILPNTRV 477
              +P  R 
Sbjct: 688 GIRIPLYRA 696


>gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1306

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 7/337 (2%)

Query: 158  MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
             +  A + +  P       +A  +  +   +   +  T L  F       F   + I+  
Sbjct: 708  SVRKATYTNLDPGDYIFRVRASNNDGIWTPAPLELHITILPPFWRTPLAFFLYILLIIGA 767

Query: 218  QAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                  ++ E E  +S  ++ ++ A+   E +  K RF  ++SHE RTPL+ I+   E  
Sbjct: 768  LILARRVVLERERLRSRIEQEKQEAQRIHELDALKIRFFTNISHEFRTPLSLIITPLE-- 825

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
              + +G       ++ +  + R+ + LLNL+N++LD  ++E    +L  S   ++  V++
Sbjct: 826  --KILGKGVEANIQQQLILVQRNARRLLNLVNQLLDFRKMEVQEIKLHTSEGDIVAFVKD 883

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                    +++K I +         ++  D   + ++I NLLSNA KFT   G + V V 
Sbjct: 884  LTTSFSDLSEKKQIHLDFHSSVKALNMLYDPDKIEKIIFNLLSNAFKFTPEQGNISVDVQ 943

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               G    I +KDNG GI   +   +   F Q  I      QG G+GL I +  +  H G
Sbjct: 944  VQHGSTLAIIVKDNGIGIPLEQQERIFERFFQHDIPGSLLNQGSGIGLSITREFVKLHSG 1003

Query: 455  QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
               + S    G     +LP   +++ +   +  ST  
Sbjct: 1004 TITVDSAPGMGSTFTILLPLKGLVSQLVVTDPVSTNI 1040


>gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1990

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              E + +  E   +KSRFL++MSHE+RTPL  I G    ++   +    NE  ++Y   I
Sbjct: 1317 LLEAKLK--EAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTVL----NEEQRDYTNTI 1370

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              S   LL +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   +
Sbjct: 1371 QTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIV 1430

Query: 355  DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---------GQYIS 404
            +  +   V  D+  +RQV+LN++ NA+KFT   G V                       +
Sbjct: 1431 EEDVPAWVKGDKVRIRQVLLNVIGNAIKFTTE-GEVFSRCRVYKDGASSNLDNEIVLEFA 1489

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            I D G G  + E   +   F Q   +      G GLGL I++ ++  HGG+    +   +
Sbjct: 1490 IIDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGK 1549

Query: 465  GVEVIAI----LPNTRVLNFIP 482
            G          LP        P
Sbjct: 1550 GSTFTFTAKFALPTKEDHPDAP 1571


>gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1052

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 139/265 (52%), Gaps = 12/265 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDE-TRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
              + + D    + +++ +S+    +R  EE N AKS FLA+MSHE+RTPLNA+LGF+++
Sbjct: 690 ETHSRRTDSQEIIAISRDISERIAMERGLEEANKAKSMFLANMSHEIRTPLNAVLGFNDL 749

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I   T    ++   KEY   I  SG++LL LI +ILD S++EAG  + +    S   +VR
Sbjct: 750 IARNT----SDPKLKEYAAQIDLSGKNLLTLIGDILDFSKVEAGGVQFNYDFFSPHHLVR 805

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391
           E I + ++ A+++ I++  K    +   +  DE  +RQ+++NL+SNA+KFT  G   + +
Sbjct: 806 EIIALFEMEAKKRGIDLITKERTPIPKQIKLDEDRVRQILINLVSNALKFTEKGSVCLEI 865

Query: 392 TVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              +   + Q      S+ D G GI E E   +  +F Q          G GLGL I+++
Sbjct: 866 HAAYIKQKDQRCNLTFSVIDTGIGIPEKEQHVIFEAFRQQEGQSTRKYGGTGLGLAISKN 925

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +     G   ++S +  G       
Sbjct: 926 LAEGMEGSIDVKSNVGSGSTFTLSF 950


>gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 482

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 14/275 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
             T   ++   K +      DD +  +E+A  +++  RK  E     K   ++++SHE+ 
Sbjct: 222 MTTGRWYQCIDKAIRW---TDDRLVRMEIAIDITE--RKEME---RMKDEMISAVSHEMH 273

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL A++GF+E +       ++ E  K  +  IH+  + L  LIN  L L R++A   + 
Sbjct: 274 TPLTAMIGFTEFLLEN---EVDREQQKNCLQTIHKETERLSELINNFLQLQRLKASMVKF 330

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               +S+              A  +   I  +  P L  V  +E+ + QV  NL+SNA+K
Sbjct: 331 RIMPVSVGL--LLADAAALYTAASRKHTIVVECPPDLPPVRGNEEQLYQVAGNLISNAIK 388

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++  GG V +  G          +KDNG GI+      V   F +   + +    G GLG
Sbjct: 389 YSPAGGTVTLG-GRADDDMVVFWVKDNGVGISPEFQERVFERFFRVDNSDRRKVGGAGLG 447

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           L + + I+A HGG+  + S    G      LP  +
Sbjct: 448 LTLVREIVAAHGGRVWVESTPDAGSTFFVSLPRMK 482


>gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ECD227]
          Length = 949

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + +    G    I ++D 
Sbjct: 567 LYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLAR-DGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TIRIPL 690


>gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 964

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                   I+E + ++      +++AE  N  KSRFLA+MSHE+R+PLNAILG  E++  
Sbjct: 310 LFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLH 369

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    N+  + +      +G  LLN IN+ILD S+IEAG+  L  +      +V + +
Sbjct: 370 SKL----NKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFEPDKLVAQVL 425

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +L+ +A +K +++   +D ++   +  D + + QVI NL+ NA+KF+   G + V +  
Sbjct: 426 QILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVS-GTITVEMWI 484

Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +      +  + D+G GI+E     +   F Q      +  +G GLGL I + ++  
Sbjct: 485 ADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITM 544

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG+  + S+L +G      
Sbjct: 545 MGGEIELESELDKGCCFTFY 564


>gi|296537357|ref|ZP_06899219.1| sensory box sensor histidine kinase/response regulator [Roseomonas
           cervicalis ATCC 49957]
 gi|296262316|gb|EFH09079.1| sensory box sensor histidine kinase/response regulator [Roseomonas
           cervicalis ATCC 49957]
          Length = 430

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 158/423 (37%), Gaps = 46/423 (10%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L+   I          P  +L  +A +          + +              L     
Sbjct: 12  LVFGGIILLVVWASGGPGLALAGMAAFFLLAIGVLAHIIAYPASNRARRGAAVALDCGFL 71

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALS 175
                     ++           +     ++  +        L  A+  +      VAL+
Sbjct: 72  S---------LQLHWGAEAVAMFWPVYLWVVFGNGFRFGLAWLRIAMLAALAGFGAVALT 122

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           T        L   L   L     +   +   L                            
Sbjct: 123 TPFWQEQWHLATGLWVGLLILPLYAGTLIRKLS--------------------------- 155

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + +++AE  N AKS FLAS+SHELRTPLNAI+G   ++     G   +   +E +  + 
Sbjct: 156 -QAKQQAEAANSAKSLFLASVSHELRTPLNAIIGMGGLLR----GTRLDGEQREMLSTMD 210

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            + + LL+LI++IL+LSRIEAGR        +   ++ E   +L  + ++K +     + 
Sbjct: 211 SAARSLLSLIDDILNLSRIEAGRMPSERVEFAPAALLAELRALLAAQCRDKGLRFSLHLT 270

Query: 356 PSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPG 411
           P   +V   D + +  V+LNL  NAVKFTA GG  V +      G G  +   + D+G G
Sbjct: 271 PRTPAVLRGDRRHLLDVLLNLAGNAVKFTAEGGVTVALDAEPLPGGGLLLHAEVSDSGIG 330

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA      +  +F Q   +I +   G GLGL I + ++   GG   +RS   EG      
Sbjct: 331 IAAEAQQRIFETFTQADSSIINRFGGTGLGLAICRRLVQLMGGAIGVRSAPGEGATFHFS 390

Query: 472 LPN 474
           +P 
Sbjct: 391 VPV 393


>gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 455

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 2/255 (0%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +   +    +   +  +  NLAKS F++ ++HELRTPL +I G   +I    +G +  E 
Sbjct: 203 QSRRSLREKERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEV-PER 261

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           ++  +    R+  HL+ L+N++LD+ +  AG+ E     I L   +   I   Q  A   
Sbjct: 262 FRRMLSLAERNCNHLIQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNF 321

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + I     P    VW DEK + QV+ NLLSNA KF+     + V +  T G    IS++
Sbjct: 322 GVTIEAAPMPEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKAT-GTEAVISVQ 380

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI   +   +   F Q   + +    G GLGL I +SI+  H G+  + S+   G 
Sbjct: 381 DSGRGIPREKQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGT 440

Query: 467 EVIAILPNTRVLNFI 481
                L    V    
Sbjct: 441 TFYIKLERVAVAQAA 455


>gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 613

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 617

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  + +F++++SHELRTPL ++  + E +        + +   +++         ++
Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALHDGAW--KDPKLAPKFLKVTQDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357
            +IN++L LSR+++G  ++    +++ ++    +    +  ++         I +     
Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKR 489

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D     QV+ NL++NA+K++  GG +   +  T      +S+ D G GI   +I
Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   A    + G GLGL I++ ++    GQ    S   +G      LP   +
Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALPYEPL 608

Query: 478 LNF 480
              
Sbjct: 609 EEE 611


>gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
 gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
          Length = 841

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 4/260 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E  +A+  + E R  AEE    KS F+A+MSHELRTPL +I+GFSE+     +     
Sbjct: 584 VTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFSEL---GQLRSRAT 640

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E   DIH +GQ +L L+N++LD++++E+    +    + L  ++R     L+    
Sbjct: 641 PKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARELEPLLH 700

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I++  +++ +     AD    +QVI N+L+NA+KF+   GR+ V   +       + 
Sbjct: 701 QKQIDLRLRLEDAPLIAKADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDGQGNICVD 760

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
             D GPG+   E+  +   F Q S   K    G GLGL I + I+    G     ++   
Sbjct: 761 FLDQGPGVPTQELDKIFQPFVQSSK-TKDGSGGTGLGLAICRKIIDAMDGTITAANRPDG 819

Query: 465 GVEVIAILPNTRVLNFIPED 484
           G      LP        P +
Sbjct: 820 GAVFRITLPTRSAQETQPGE 839


>gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1436

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA+MSHE+RTPLNA+LGF+++   ET    +    + +   I  SGQ LL +IN+I
Sbjct: 844  KSEFLANMSHEIRTPLNAVLGFAQIGARET----DPNRARTFFRRILDSGQLLLGIINDI 899

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
            LD S+IEAG+ ++ ++ + L  ++   + +L  RA++K +    + DP+L  +   D+  
Sbjct: 900  LDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDDLR 959

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            + QV+ NLLSNAVKFT   G V   +          S++D G G+ E  +  +   F Q 
Sbjct: 960  LSQVLANLLSNAVKFTDQ-GAVTFGIRR-EEGWIVFSVEDTGIGMHEDYLANLFQPFEQA 1017

Query: 428  SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +I     G GLGL I++ ++   GG+    S+  EG      LP 
Sbjct: 1018 DGSITRRYGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLPL 1064


>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 513

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 16  KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 71

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 72  LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 131

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 132 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 189

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 190 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 249

Query: 469 IAILPN 474
              +P 
Sbjct: 250 TLRIPL 255


>gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 695

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 10/235 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE+   A+S FLA+MSHE+RTP++ + G  E +   ++    NE  KEY     RS + L
Sbjct: 303 AEQALKARSEFLANMSHEIRTPIHGVQGMLETLCSTSL----NEKQKEYTHVAMRSAESL 358

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSS 360
           LN++N+ILD S+I++G        ++  +++ + I M +  A +K IE   +    S + 
Sbjct: 359 LNIVNDILDFSKIDSGHMTYDVEPVNFKELIEQQIPMFRRLADKKGIEFITETAAVSDTL 418

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGE 416
             AD   + Q+++NL++NAVKFT   G + ++   T        +K    D G GI++ +
Sbjct: 419 FLADSLRLSQILMNLMNNAVKFTDK-GSIKISTRCTKYGAGRFRVKLIVTDTGIGISDEQ 477

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              + + F Q   + +    G GLGL I  +I+ ++ G   + S + EG   I  
Sbjct: 478 QKVIFSPFLQAEESTQRRFGGTGLGLAIVNNIVEHYDGNVEVSSAIGEGARFIVT 532


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 185/484 (38%), Gaps = 36/484 (7%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLV------ANIGTWFTQNPIFPM----WSLITLA 81
            F        +  LF          LL       A    + +     P+    W      
Sbjct: 78  AFGTAFGLNFITLLFERESAKFQLALLACYINFLAGFSDYMSWKGYAPIVRDSWGQGFQL 137

Query: 82  VYAANLSLGKKVMNSDIKIG-EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           +      L    M   + I  +    +++ ++    + + + +L  +         +  Y
Sbjct: 138 LRTVMWLLTTPAMVYLLSIISDFSRLKVYSVMLADVLMITFGILAFLAYNKV--MSILFY 195

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A  L A  + ++ +               V+L    + ++ +        +   +   
Sbjct: 196 MVAWCLFAYVVHSMWSMFHASIAEARHDSSRVSLEVLRLFAVGLWFTFPVIWIVVKMGLV 255

Query: 201 TYITYHLFK-------------SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
              T                  S +       E+  LIA   V +    +  +  ++   
Sbjct: 256 DIRTEEWTWCACDFLGKVMFSSSLLHGNFLTIEQRRLIAMRIVEEGNRIQVIQELKDLVE 315

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K RF++SMSHELRTPLN I+G S+ + + + G +N++  K  I  I  SG  LLNLIN+
Sbjct: 316 QKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKT-ITTIKTSGARLLNLIND 374

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILD + +  G+  +    ++L  +V + I + Q  A+   +++   +  ++  V  D   
Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR-GVKLVNDLRENVPFVLGDTGR 433

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV  NL+ N+ KFT   G + ++          +++ D G GI E +   +  +F Q 
Sbjct: 434 IIQVFHNLIGNSCKFTHS-GNISISAA-VKDDEVEVAVADTGIGIPEDKFDQIFLAFEQV 491

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFI 481
            +++     G GLGL + + ++  HGG+  ++S+  +G      L      PN       
Sbjct: 492 DMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTLKIHSEHPNEGQPQMT 551

Query: 482 PEDN 485
           P ++
Sbjct: 552 PTES 555


>gi|94495744|ref|ZP_01302324.1| two-component signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
 gi|94425132|gb|EAT10153.1| two-component signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
          Length = 439

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 158/435 (36%), Gaps = 36/435 (8%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           L        L +LL+   G          +   I   V    ++ G   +          
Sbjct: 13  LSISQITASLAMLLLGTGGALMMGAHPLHIALPILAGVVVLIITSGDAGLRPADPPLAAP 72

Query: 105 VWRIWLLV----GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
             +I          +  G+   L+ + +          +      +              
Sbjct: 73  PEQIDFTAHPDFPSMLEGISDPLMLVEKGRIARANRAAMRLLGVHIEGEDARIAIRHPAA 132

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                S  P+   +  + +          +      A++    + + +  S         
Sbjct: 133 AERLASTAPLAEPIMIELVGLGTRDQRWQMRVAPVGAVATMRRLVHLVDHSGTH------ 186

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                                        +  F+A+ SHELRTPL  ILGF E +    +
Sbjct: 187 ------------------------AAERMRVDFVANASHELRTPLAGILGFIETLADPEL 222

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G  + ET + ++  +    + +  LI++++ LSRIEA +Y   +SA+ L ++V E + + 
Sbjct: 223 GK-DVETRQRFLKIMDGEARRMQRLIDDLISLSRIEAEKYRTPDSAVDLSELVAEVVGVF 281

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +    ++  ++  +I PSL+ V  D   + Q+I NL+ N+VK+   G  + VT+   S  
Sbjct: 282 RSSHGDRGRDVEMEIAPSLAPVLGDRAQLSQLIHNLIGNSVKYGRPGTPIRVTLSEGSSG 341

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GI    +P +   F +       A  G GLGL I + I+  H G+  I 
Sbjct: 342 MARLCVADEGEGIGPDHLPRLTERFYRVDSGRSRAMGGTGLGLAIVKHIVERHRGRLDIA 401

Query: 460 SKLREGVEVIAILPN 474
           S L +G  +  +LP 
Sbjct: 402 STLGKGTSITVLLPP 416


>gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
 gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
          Length = 656

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNA++     +    +        + Y+  +  S   LL++IN+IL
Sbjct: 281 SEFLANMSHEIRTPLNAVI----GLTGLLLDTDLTPEQRNYLEIVRNSSDSLLSVINDIL 336

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368
           D S+I+ G  EL  S   L   +   + ++  R  EK + +   +D  L ++   D   +
Sbjct: 337 DFSKIDGGMMELEHSPFDLRRCIESTMDLMVTRVAEKGLVLKVVLDDQLPTMLVGDASRL 396

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQV+ NLLSNAVKFT   G V V+V       G      + D G G+ + ++  +   F 
Sbjct: 397 RQVLANLLSNAVKFTDK-GFVEVSVRGNAIPEGFELRFDVLDTGIGMPQDKLDRLFMPFS 455

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGL I++ ++   GG+   +S    G      +     L  +    
Sbjct: 456 QIDSSITRRYGGTGLGLAISKRLVGMMGGRIWAKSNPGVGSTFTFTI--KVKLPCMQPVQ 513

Query: 486 HESTQYK 492
           HE    K
Sbjct: 514 HEVKDLK 520


>gi|188585612|ref|YP_001917157.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350299|gb|ACB84569.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 597

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F++++SHEL+TPL +I GF E ++ ET+G  N  T +E++  I      +  L
Sbjct: 368 LEQMRKEFISNISHELKTPLTSIKGFVETLKEETLGENN--TQREFLNIIEEETDRVSRL 425

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++  LSR+E  + E ++  +++++ + + + + Q R Q+    I++   P       D
Sbjct: 426 INDLTILSRLETNKVEFNQDEVNVLNFLDKTVSISQKRWQQDGYRIYRGGVPFDLKALMD 485

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E  ++QVILNL+ NA +    G ++ +    +       S+ DNG GI E +   +   F
Sbjct: 486 EDKIQQVILNLVDNACRHNPPGTKIKLKA-VSEKDYIRFSVTDNGKGIPEEDKERIFERF 544

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   +      G GLGL IA+  +  H     + S++  G          R+L+
Sbjct: 545 YRVDKSRYRDYGGTGLGLSIAKHAVIGHNSSLNVISRVGRGTTFYFY--VKRILD 597


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F++++SHELRTPL ++    E ++   +   +    + ++  +     +L  ++ E+L+
Sbjct: 364 DFVSNVSHELRTPLASLKALVETLQEGAL--EDPPAAQRFLRQMEIEIDNLTQMVRELLE 421

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LSRIE+G   L    +S  +I+R     ++L+A+   + +      SL  V+AD + + Q
Sbjct: 422 LSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQ 481

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V++NL  NAVKFT  GG + + V    G+     ++D G GI   ++  +   F +    
Sbjct: 482 VLVNLTHNAVKFTPPGGEITLGVKQ-EGQAICFWVRDTGVGIPPEDLERIFERFYKTD-- 538

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              + +G GLGL IA+ I+  HGG+    S++++G      LP  +
Sbjct: 539 RSRSGEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLPLEK 584


>gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 979

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 163/468 (34%), Gaps = 23/468 (4%)

Query: 10  KDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN 69
             +   I  +             +   +     E     S    ++      I       
Sbjct: 270 AALTQRILESRPQAAERTGESRRYRNRLFMASAE--VTNSGWTIVYAFTWRTI--LRDLG 325

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
           P    +  + L V      L   + +   K          +   +               
Sbjct: 326 PRLAAYIAVVLLVLGFMWLLLLMLDHKLFKPDYERS--QRVFESEALNRTMVAAAPSGFA 383

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                +   + +S  +        L+       +      +             +     
Sbjct: 384 LLSFEQGDILLQSNLMR----AYELNTHPDEPRLHERLLGLYDRSPGAPAWQSDLEMPLR 439

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                        I    ++    +L   ++   L           DE R  A+  N AK
Sbjct: 440 LA-DGRVDDLLVSIVRTKYRGKDVLLCSFSDVTTLKNTERK----LDEARAAADAANQAK 494

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHE+RTPLNAILG  E++    + PL  E     +G +  S   LL +IN+IL
Sbjct: 495 SAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQEER----VGVVTSSSTALLGIINDIL 550

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGM 368
           D S++E+G+  L   +  L  ++RE   M +  AQ K +E    ID +L      D   +
Sbjct: 551 DFSKVESGQMTLESISFDLAQVIREVAAMFEPVAQAKGLEFDCVIDDALAPHYLGDPTRI 610

Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQ+++NL+SNA+KFTA G     V++           I + D G G+   +  ++  +F 
Sbjct: 611 RQIVINLVSNAIKFTATGDVLLEVYLKDDTAEDSPIVIGVSDTGIGMTPQQQESLFHAFT 670

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q   +I     G GLGL +   +     G   ++S+L  G   +  LP
Sbjct: 671 QADSSIARRYGGTGLGLALCLRLTELMHGTIWVKSELHAGSTFVVTLP 718


>gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 700

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AK++F++++SHELRTPL +I  F E +  E    +++    +Y+   +R    L  
Sbjct: 432 ELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSSAERLDYLEIANRETDRLTR 490

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+ +     + +  ++ + +   QL+A++K I++ + +DP L  VW 
Sbjct: 491 LVNDVLDLSRLESGK-QYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVDPDLPLVWG 549

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIP 418
           +   + QV+ NLL NA+KFT  GG V V          S +   +++ D G GIA  +  
Sbjct: 550 NYDLLLQVMTNLLGNALKFTPSGGLVTVHAHLVVQADGSPQAVRVAVADTGIGIAPEDQE 609

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F +         +G GLGL I ++I+  H  +  + SKL +G      L
Sbjct: 610 RIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHRTRICLESKLEQGSTFWFDL 662


>gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
 gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
          Length = 616

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 14/332 (4%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201
            L +  + +AL  F +     +     +  L T  I +  +L     G+++      FF 
Sbjct: 15  VLRLGRTKAALLGFFVLAFFAIIVQGALTYLFTGEIQTRDILRSISFGLISAPFVIYFFN 74

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            I   L KS +++     +   L  +     +         E+ N  KS  +A++SHELR
Sbjct: 75  LIVVKLEKSRIQLEQSIYDLGVLREQDAHLNATL-------EKNNRDKSVLMATISHELR 127

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I+G S ++    +     +  +EY+  I+ S   L ++ ++I+DL +I++ R EL
Sbjct: 128 TPLNGIIGLSRILLEGEL----TQQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIEL 183

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
               +    ++ +      L A ++ I+       +L + +  D   + QV+ NL+SNAV
Sbjct: 184 FNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLPNFILVDNARLSQVLWNLVSNAV 243

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GG +++ V          S++D G GI + E   V   F Q   + +   QG G+
Sbjct: 244 KFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQRKVFAMFYQAENSQEKKAQGSGI 303

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I++ I    GG   + S+  +G      +
Sbjct: 304 GLAISKRIAKLMGGDLTLESEEGKGSTFTLTI 335


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +E RKRAE     + AK+ F +++SHE RTPL  +LG  E +  +  G L  +  +  + 
Sbjct: 334 EEARKRAEALLEIDRAKTAFFSNISHEFRTPLTLMLGPLEELLSQQDGVLT-KQQEANVT 392

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             HR+   LL L+N +LD SRIEA +       ++L D+  +     +   +   +E   
Sbjct: 393 ATHRNAMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNV 452

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                  + + D     +VILNLLSNA K+T   G + V +   S +   + ++D G GI
Sbjct: 453 TCKDLSMAAYVDRDMWEKVILNLLSNAFKYTLQ-GSISVILE-ESDQHAILLVRDTGVGI 510

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              E+P +   F +   +   + +G G+GL + + ++  H G   + S+  +G      +
Sbjct: 511 PVSELPNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKI 570

Query: 473 PNTRVLNFIPEDN 485
           P  R    +PE+ 
Sbjct: 571 PLGRA--HLPEEQ 581



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 101/280 (36%), Gaps = 24/280 (8%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAI 267
            ++ +++        D++           E R      +N    +F    SH+L+ PL  I
Sbjct: 741  RAQIRVSRLHRHALDILQHSAEELEKKVEARTSELLRKNSELEQFAYIASHDLQEPLRKI 800

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
              FSE+++              Y   I  S + +  LI ++LD SR+     E     I 
Sbjct: 801  RTFSELLQKSLQKGNP---VNNYFDKIQSSAERMTQLIKDVLDYSRL--SNTEEKFVPID 855

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            L  I+++      L  ++K   I      +L  V      ++Q+  NL+ N++KF     
Sbjct: 856  LNTILQQVKGDFDLLIEQKQATIKSN---TLPVVKGIPLQLQQLFTNLIGNSLKFCENQP 912

Query: 388  RVHVTVG-------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
             + +                        +   DNG G  +     +   F + +   +  
Sbjct: 913  LISIFASPLPAPEIPFYPGLQEDISYVKLEFSDNGIGFEQQFAERIFAIFQRLN--ERKV 970

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              G G+GL + + I+ NH G      KL EG     ILP 
Sbjct: 971  YAGTGIGLALCKKIVENHHGIIRANGKLNEGATFTVILPA 1010


>gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache,
           HAMP, PAS, PAC, PAS and HPT domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 1229

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 12/274 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E + A++      + AE    AKS FLA+MSHE+RTP+NA LG   +++   +    +
Sbjct: 608 ISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTEL----S 663

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET K Y+     +   LL +IN+ILD S++EAGR  L  +   +  ++ +   + Q   +
Sbjct: 664 ETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVAQATLR 723

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401
           EK IE   +    +   ++ D   + QV+LNL SNA+KFT  G   V V +         
Sbjct: 724 EKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKGKVEVEVALLAQEQGEVT 783

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S+ D G G+   +  +V T F Q   +      G GLGL I++ ++   GG+  + S
Sbjct: 784 LRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQLMGGRMWVVS 843

Query: 461 KLREGVEVIAI----LPNTRVLNFIPEDNHESTQ 490
           +   G     I    LP        P        
Sbjct: 844 EPGRGSTFSFIAHLALPAASGAQAAPGGEGPEPD 877


>gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 613

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|21243756|ref|NP_643338.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109344|gb|AAM37874.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1189

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++        + Y   I R+G
Sbjct: 814  QEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI----KQRSYTESIRRAG 869

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    +I    
Sbjct: 870  AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVGALMAPLAQERGLRFSLEIGLLG 929

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
              +   D   +RQ++LNLL+NA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 930  DITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 988

Query: 417  IPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F QG  A   S   G GLGL I Q +    GGQ  + S+L  G   +  LP  
Sbjct: 989  KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLPLR 1048

Query: 476  RVLN 479
             V +
Sbjct: 1049 WVAS 1052


>gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 586

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217
             +  +    ++  L T  I++  +L     G+++      FF  I   L KS +++   
Sbjct: 1   MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L  +     +         E+ N  KS  +A++SHELRTPLN I+G S ++   
Sbjct: 61  VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     E  +EY+  I+ S   L ++ ++I+DL +I++ R EL    I    ++ +   
Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              L A++  I+        L + ++ D   + Q++ NL+SNAVKFT  GG ++++V   
Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+KD G GI + E   V   F Q   + +   QG G+GL I++ I    GG  
Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + S++ +G      +         P +  +S +   +A
Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322


>gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
          Length = 403

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 149 LCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 208

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDLS +EA   + +   I L DI
Sbjct: 209 KLI----TFATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDI 264

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 265 CLQLKQQFCHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPK-GEIHF 322

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    + T+   FG+         QG GLGL + + ++  
Sbjct: 323 GY-REKEDFVEFYVKDSGIGIPAERVATIFRRFGKV----NDFVQGTGLGLTLCRMLVEK 377

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 378 MGGRIWLRSQEGQGSRFYFTLPLIR 402


>gi|163735013|ref|ZP_02142450.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
 gi|161391795|gb|EDQ16127.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
          Length = 1116

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 184/448 (41%), Gaps = 21/448 (4%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
            S I      L+A +  W T    +   +            +     +        +   
Sbjct: 461 SSFIALGTSFLLAPVIAWATGGRYYIARAAPADVAG--KCIMCDYSFDPPDMTHCPFHAG 518

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
               +       C                +        +    +S +S F+L  A     
Sbjct: 519 PICSLCCTLDSACRDSCKPHARLDNVTRGVLTRNLPLSVAQALMSRMSRFILITAFIGLG 578

Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           F  ++        + +   I     ++  +++    +   +     +   K    Q E+ 
Sbjct: 579 FGGLLLFVRDLRYAENFDAILWVVFTMVVIVSGITVWMYLLVSESQRQARKEAEKQTERL 638

Query: 223 DL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              +   E       + +++AE  NLAK+R++  +SHELRTPLN+I GF++++E +   P
Sbjct: 639 LFEVRAHERTDLELQQAKEKAEAANLAKTRYMTGLSHELRTPLNSIYGFAQILERDEDMP 698

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 +  I  I RS +HL  LI  +LD+SRIEAGR ++S   I+L   +++   + + 
Sbjct: 699 ---ARRRNSIITIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSSIFEE 755

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            A+EKN+    +    L   +  DEK +RQ+I+NLLSNA+++T   G V + + + +   
Sbjct: 756 AAREKNLRFRMETSRVLPVWITFDEKRLRQIIINLLSNAIRYT-DNGEVSMRIKYRNE-V 813

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D G GI E +   +   F +GS    +  QG GLGL I + ++   GG   + S
Sbjct: 814 AVIEVSDTGCGIREEDRARIWEPFERGSG---TQAQGSGLGLTITKLLVEILGGDIELES 870

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488
              +G      +    +L  +P D  ++
Sbjct: 871 TEGKGSLFRVRV----MLPAVPADARDN 894


>gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3073

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            +     ++            V++         +  +     S   E++++A+  N AKS 
Sbjct: 2553 LWGLLAAYNHSQPRAWQPGEVRLFEQVCSHLGVALKQAELLSAMAESKEKADAANEAKSL 2612

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FLA+MSHELRTPLN ILG+++++       L+N+   E +  I++ G HLLNLIN+ILD+
Sbjct: 2613 FLANMSHELRTPLNGILGYAQILRRSE--SLSNKEL-EGVDTIYQCGSHLLNLINDILDI 2669

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
            S+IEA + EL+  A +L  +++  + M +++A +K I+   +    L   V  D+K ++Q
Sbjct: 2670 SKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQPSSQLPQQVEVDDKRLQQ 2729

Query: 371  VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQG 427
            V+LNLL NAVKFT  G     V V   S +   IS  + D G GIAE ++  +  SF Q 
Sbjct: 2730 VLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGVGIAEQDLVKLFQSFKQV 2789

Query: 428  SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDN 485
                K A +G GLGL I+Q I+   G +  + S+ ++G E      LP         + N
Sbjct: 2790 GDQHKQA-EGTGLGLAISQRIVRLMGSEIHVTSQPQQGSEFSFTINLPLAEQRLAQQQSN 2848

Query: 486  HESTQYKC 493
                 Y+ 
Sbjct: 2849 PVIVDYQG 2856


>gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium
            leguminosarum bv. viciae 3841]
 gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein
            [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1310

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1052 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1111

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1112 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1171

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1172 ANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1231

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1232 LRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSA 1291

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1292 PNEGTLVEITFPSQRVL 1308


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 27/357 (7%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
                 ++         +    + TLL  +S+  +    L  AV L    ++ AL     
Sbjct: 139 IVAATPILIEQQIAGAVVMHVPAETLLSVVSVINMR--TLWLAVILMLIAMLFALWLSNY 196

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +S  +  +  A +   A  F         K N+K      +    I  +    +  D+ R
Sbjct: 197 ISRPLTAMRNATLDIAAGHFS-------KKVNIKGEDELGQLASAINYMSSELAKLDQMR 249

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +            +A++SHELRTPL+ I G+SE ++   +   + E  K+Y+  I     
Sbjct: 250 R----------DLIANVSHELRTPLSLIRGYSEALKDGVV--KDTEQQKQYVDIILDETA 297

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L++++LDLS++E+G   ++    S+   + E     +  A +  IE+    D ++ 
Sbjct: 298 RLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQIELTASADDNII 357

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V ADE  + QV+ NL+ NA+  T   GR+ V+         +I + D G GI+  ++P 
Sbjct: 358 -VHADEGRIEQVLYNLIQNAINHTPTHGRIIVSAE-KHDGKAFIQVSDTGRGISPDDLPH 415

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +G    K    G GLGL IA+ I+  HG    ++S+  +       LP  R
Sbjct: 416 IFDKFYKGEHNRK----GTGLGLTIARGILTAHGSDITVKSQPNQSTTFAFYLPLYR 468


>gi|239627311|ref|ZP_04670342.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517457|gb|EEQ57323.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 810

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 134/275 (48%), Gaps = 12/275 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E  ++  +L    +   +    AE  N AKS FL+ MSHE+RTP+NAI+G + +     
Sbjct: 265 TELREMQKKLTEQTAALKDALTVAEHANRAKSDFLSRMSHEIRTPMNAIIGMTTIAAAYI 324

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               + +   + +  I  S +HL+ LIN++LD+S+I  G+  ++     L  +V     +
Sbjct: 325 ---DDKQRVADCLEKIGYSSKHLMTLINDVLDMSKISEGKMRIAHEPFKLETVVESISSI 381

Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395
           +  +A+EK ++     ++ + + +  D   + QV+LNLLSNA+KFT  GG + + +    
Sbjct: 382 IYPQAREKGLDFTVPLVELTETELIGDSLRLNQVLLNLLSNALKFTPKGGSIRMEIRQML 441

Query: 396 TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ++ D G G++   +  +   F Q  ++      G GLG+PI ++++   G
Sbjct: 442 KKDGKIRLRFTVSDTGIGMSSAFMERLFVPFEQEDMSAGQNAGGTGLGMPITKNLVTLMG 501

Query: 454 GQFLIRSKLREGVEVIAI----LPNTRVLNFIPED 484
           G   ++S+L +G   I      LP  +     P+ 
Sbjct: 502 GTITLQSELGKGTSFIVELDFDLPKDKGKMPAPKQ 536


>gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1249

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 18/295 (6%)

Query: 195  TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                        L ++    +  Q E+  +     V   + D T++RA   +  K  FL+
Sbjct: 958  VVTVEMPLANNRLGQALASRIIKQEEETGIKYLG-VVILIRDITKERA--VDQMKKNFLS 1014

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETY-------------KEYIGDIHRSGQHL 301
             +SHELRTPL +I+GFS +I  +    +  E               ++ +  +   G+ L
Sbjct: 1015 MVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQNLDIVVCEGERL 1074

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
              L+++ LD+++IE+G+  L+   I    ++   I  +       ++E+ +     L ++
Sbjct: 1075 SKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVELVEDFSRDLPTI 1134

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
              DE  + QV +N++SNA+KFT   G V             ISI D G GIAE +   V 
Sbjct: 1135 LGDEDRLIQVFVNVISNALKFTEK-GSVTCRAEVDHEN-LLISITDTGIGIAENDYSKVF 1192

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F Q    + +   G GLGL I++ I+  HGG   + SKL +G       P T+
Sbjct: 1193 DPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFISFPLTQ 1247


>gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04]
 gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04]
          Length = 599

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 360 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 417

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 418 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 477

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 478 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VVLSITDQGLGIPKKDLNRV 536

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 537 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 588


>gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1]
 gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1]
          Length = 493

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                +  +R +  +  K+ F+A++SHELRTPL AI  ++E I    +  L+  T KE++
Sbjct: 238 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNT-LEELDLGTLKEFL 296

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I     HL NL+NE+LD SR+E    +++   I L  ++   +  ++  A   N+ + 
Sbjct: 297 EVIMDQSSHLENLLNELLDFSRLERKSLQINREKIDLCGLIESAVNAIKEFASSHNVNVL 356

Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGRGQYISIKD 407
            + + P     + D   +RQV+LNLL+N VK++        V V +      G  I+++D
Sbjct: 357 FESNVPCPVEAYVDPTRIRQVLLNLLNNGVKYSKKDVPDKYVRVILD-EKDGGVLITVED 415

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F +   ++     G GLGL I + I+  HGG+  + S++ +G  
Sbjct: 416 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLTITKEIVELHGGKIWVESEVGKGSR 475

Query: 468 VIAILPNTRVLN 479
               +P  R   
Sbjct: 476 FFVWIPKDRAGE 487


>gi|22124428|ref|NP_667851.1| two-component sensor/regulator [Yersinia pestis KIM 10]
 gi|45440264|ref|NP_991803.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957214|gb|AAM84102.1|AE013653_2 putative response regulator [Yersinia pestis KIM 10]
 gi|45435120|gb|AAS60680.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 929

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L             +  L++ +     +    P+   ++
Sbjct: 261 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 320

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +++      
Sbjct: 321 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 374

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E ++ AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 375 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 430

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 431 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 490

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            ++   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 491 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 548

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 549 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 604

Query: 475 TRVLNFIP 482
             +   +P
Sbjct: 605 NAITPPMP 612


>gi|259414842|ref|ZP_05738765.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
 gi|259349293|gb|EEW61040.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
          Length = 466

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 134/317 (42%), Gaps = 15/317 (4%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  V                  +     K  V   + + +   L A +    S  D  RK
Sbjct: 14  AGGVSRRRYERERRARQEAEELLEAKSRKLYVAYEALKRQAAGLEAAVLERTSELDTARK 73

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  N AKS FLA MSHE+RTPLN +LG +  +    +        ++ +  +  SG  
Sbjct: 74  DAEAANSAKSVFLAHMSHEIRTPLNGVLGMAAALAETDLNL----EQQKMLEVLIESGDL 129

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI----DP 356
           LL+++N+ILDL+++EAG  EL  +  S+ D+        +L+ ++K +          + 
Sbjct: 130 LLSVLNDILDLTKVEAGELELDITPCSINDLFESVCKQFELQVRQKGLSFAIVYGGMLEE 189

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGI 412
                  D   +RQV+ NLLSNAVKFT   G + +    T           SI+D G GI
Sbjct: 190 DNVWAEFDPTRLRQVLGNLLSNAVKFTLE-GAITMKATVTQLNDGRLNLDFSIRDTGCGI 248

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IA 470
            E +   +   F Q   +I     G GLGL I++ I    GG     S+L +G E     
Sbjct: 249 PEDKQHRLFQPFAQADASISRRYGGTGLGLVISRKICQLMGGDISFTSELGKGTEFYGSI 308

Query: 471 ILPNTRVLNFIPEDNHE 487
           ++   R      +   E
Sbjct: 309 LIEAARARQEPQKYITE 325


>gi|228907030|ref|ZP_04070895.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
 gi|228852621|gb|EEM97410.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
          Length = 463

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 154 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 209

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 266 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 322

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 323 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 380

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + IKD G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 381 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWQI 440

Query: 459 RSKLREGVEVIAIL 472
            S+   G  VI  L
Sbjct: 441 ESEKDTGTTVIIKL 454


>gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 779

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L    +SL +++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSLPDDIGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + +   + +   IS+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPAGQVRIEIEQIAEQ-VTISVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG   I  LP  RV    
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 630


>gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 919

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 125/239 (52%), Gaps = 16/239 (6%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLASMSHE+RTPLN ++GF++++    + P      ++Y+     +G+ LL +I 
Sbjct: 376 RVKSEFLASMSHEIRTPLNGVIGFADLLLATELTP----EQRQYVALQREAGRGLLAIIG 431

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S+IEAG+ EL E A  L  ++R+C  ++   A +K + +   +  S+   V  DE
Sbjct: 432 DILDYSKIEAGKLELEERAFDLHRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDE 491

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----------QYISIKDNGPGIAEG 415
             +RQ++LNL+ NAVKFT   G V V+VG  +G G             S+ D GPGI   
Sbjct: 492 ARIRQILLNLVGNAVKFTER-GSVLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPA 550

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +   F QG  +      G GLGL I++ ++    G   ++S    G      LP 
Sbjct: 551 DQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPL 609


>gi|268607932|ref|ZP_06141663.1| multi-sensor signal transduction histidine kinase [Ruminococcus
           flavefaciens FD-1]
          Length = 509

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K+ FL+  SHEL+TPL+A+ G+++  E+E +      + +E +  I      +  ++
Sbjct: 285 NEMKTAFLSDASHELKTPLSAMSGYAQNAEIELLNGGEKRSVQEKLKRISSEANRMALMV 344

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            +ILD +RIE GR  L  S+  L  +VRE +        + N  +  +I   L SV AD 
Sbjct: 345 TQILDATRIEEGRMVLELSSCDLDGLVRETVETYFSVLNKNNNRLALRIPLELPSVEADP 404

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +++V +NL+SNA+K T   G + +           +++KD G GI+  ++P +   + 
Sbjct: 405 SRLKRVFVNLISNALKHTY-NGTILIKAEA-DEGFIKVTVKDTGSGISPEDMPHIWERYY 462

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +G  +      G GLGL I + I+ +HGG+    S+L +G E    LP ++
Sbjct: 463 KGKHSET----GTGLGLFICKFIIESHGGKIWAESELGKGTEFTFTLPLSK 509


>gi|302875217|ref|YP_003843850.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307688898|ref|ZP_07631344.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302578074|gb|ADL52086.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 554

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 2/234 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K+ F   +SHELRTPL  I    + +  E       E   + +  I+++   
Sbjct: 292 ELEKVNFMKNEFFNLISHELRTPLTLIYSSIQ-LANEIYKTEITENLDKTLTRINKNTGR 350

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL L+N ILD+S++EAG   L+ +   ++    + +  +   +  KN+ +          
Sbjct: 351 LLKLVNNILDISKLEAGYMVLNITNTEIVSNTEDIVESVIYHSNMKNVNVVFDTYEEEVY 410

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D++   +++LNLLSNA+KF+     + VT+ +T      +S+KD G GI + +I T+
Sbjct: 411 VHVDKEKYERIVLNLLSNAIKFSNDNKSIFVTMDFTENHFI-LSVKDQGVGIPKEKISTI 469

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q   ++    +G GLGL + Q ++    G+  + S+   G      LP 
Sbjct: 470 FNRFYQVDNSLTRNAEGTGLGLSLVQKLVDLMDGEISVDSEEGVGTTFTVKLPR 523


>gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 589

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TP+  I GF E ++   M          ++  I    +
Sbjct: 360 RKLE---QIRTEFVSNVTHELKTPITPIRGFIETLKNGAMNNPVVAE--RFLEIIDIEAE 414

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE    + +     L  +V +   ++Q  A+EK I +   +   + 
Sbjct: 415 RLHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL 474

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   M+Q+I+NL+ N +K+    G V V  G+       IS+KD G GI    IP 
Sbjct: 475 -MKANINRMKQLIMNLVDNGIKYNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +          G GLGL I + I+  + G+  + S + EG E I  +P
Sbjct: 533 IFERFYRVDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 456

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +++ +    I+   ++ + ++  +   L   T +   +          +   D++    +
Sbjct: 160 MLIFIGIAVIIMAGIISVFISNSITRPLREVTAMARKMASGRFNERIEKKRDDEIGELFD 219

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               ++DE  K        K+ F+AS+SHELRTPL +I G++  +        + E  + 
Sbjct: 220 ALNFMADEILKN----EKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFS--DKEELQT 273

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I      L  ++ E+LD S+  +G+  L +  + + + +        LRA  +NI 
Sbjct: 274 GLEIIENESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNIN 333

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              K+  ++  V  DE  ++QV+ NLL NA KFT  GG+V +           I + D G
Sbjct: 334 FSVKVQDNMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMI-VDDTG 392

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E E+P V   F +G    KS +   G+GL I + I++ HGG+  I S+L +G E+ 
Sbjct: 393 IGIPEDELPKVTEKFFKG----KSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEIT 448

Query: 470 AILPNT 475
             +P  
Sbjct: 449 LTIPVE 454


>gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 444

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           NL K  F  ++SHEL+TP++AI G +E++        +     E++  I      +  L+
Sbjct: 218 NLQK-EFFGNVSHELKTPISAIKGCTEILLNGA--KNDPAALDEFLTMISDENNRMEQLV 274

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L ++R E  + ++      L +++ +CI+     A+ K+ +I  +  P    +  D 
Sbjct: 275 KDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDY 333

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++   LNLL+NA+ ++     + V      G    I + D G GI   ++P +   F 
Sbjct: 334 IQLKHCFLNLLTNAIHYSGENTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFY 392

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A      G GLGL I QSI+  H G+ ++ S+L  G      LP  +
Sbjct: 393 RVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPKKK 443


>gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 615

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 141/265 (53%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNAGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V    G   Y+ +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNVK-DCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHNGTVTIKSELGQGTEFIIKLPA 585


>gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 839

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                    + +  AE  N AKS FLA+MSHE+RTPLN ++  +EV+    +     E  
Sbjct: 439 QRRQSRRLKKAQLHAEAANRAKSEFLANMSHEIRTPLNGVVAMAEVLTTRDL----PERD 494

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E +  I  SG  L  L+++ILD++RIE+G+  +  +   L  + R+ + +    A  K 
Sbjct: 495 RELVDIIRSSGVTLERLLSDILDVARIESGQVAIDPAPFDLEQVTRDVVALWAPLALGKG 554

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +E+    DP+L   V  D   +RQV+ NL+SNA+KFT   G V +      G     ++ 
Sbjct: 555 VELRLDYDPTLPRLVIGDAVRLRQVLTNLISNALKFTQE-GAVTLEAVQGEGERVRFTVT 613

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G        +   F Q   +I     G GLGL I+  ++   GG+    S  + G 
Sbjct: 614 DTGIGFDAEFKSRIFHRFQQEDGSITRQFGGSGLGLAISDDLVRLMGGELDCESPPQGGA 673

Query: 467 EVIAILPNTRV 477
                LP   V
Sbjct: 674 RFWFDLPLPPV 684


>gi|312111458|ref|YP_003989774.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216559|gb|ADP75163.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 442

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 3/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A+ SHELRTPL+      EVIE +    L   + + +  D+    + +  L
Sbjct: 213 AFQRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVF-DDMKDELRRMTKL 271

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++L L+R +A   EL++    L  ++ E I   +  A++K+I+    I   ++ ++ D
Sbjct: 272 INDLLWLARSDANAIELTKEWFLLPPVIDELIRKCRSLAEQKHIKFVTNIQKDMA-IYGD 330

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           ++ + Q+I  LL NAVK+    G++ + V         I I D G GI   +   +   F
Sbjct: 331 KERIIQLIFILLDNAVKYNTENGQIKIAVERDRKN-VNIEISDTGIGIPVEQQALIFERF 389

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   +    +QG G+GL IA+ I+  HGG   ++S+  +G   I  LP
Sbjct: 390 YRADPSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
 gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
          Length = 391

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I  L+  +      +++AE  ++AKS FLA+MSHE+RTPLNAI GF+EV+        
Sbjct: 141 HDITHLKQVERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFAEVM----GSAN 196

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y   I  +   L+ L+N+ILD+S+IEAG  E   S + +  ++ +   + Q+R
Sbjct: 197 TEEEKTQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLLSDLQRLFQMR 256

Query: 343 AQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
             +   ++    +PSL    +  D   + QVI N + NA+KFT  G    + +G+ +   
Sbjct: 257 INDAGGKVQIIAEPSLSSCLIQTDRNRVAQVISNFVGNAIKFTREGN---IRIGYEAKDT 313

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y  +KD G GI   ++  V   F +        ++G GLGL I+Q+I+    GQ    
Sbjct: 314 ELYFYVKDTGTGIPAEKLSNVFGRFVKL----NKDQKGAGLGLSISQTIVGKLSGQIGAD 369

Query: 460 SKLREGVEVIAILP 473
           S   EG      LP
Sbjct: 370 SIEGEGSTFWFTLP 383


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  ++RAE     + AK+ F +++SHE RTPL  +L   E +  +   PL+  T ++ + 
Sbjct: 336 EAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLS-PTQRDRLE 394

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
              R+   LL L+N +LD SRIEAGR +       +  + +E     +   +   + +  
Sbjct: 395 IAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLIV 454

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
              P   SV+ D++   +++LNLLSNA K+T   G + V V         +S+ D G GI
Sbjct: 455 NCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLT-GSITVNVQGF-DDHIELSVIDTGIGI 512

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E ++P +   F +   A   + +G G+GL + Q ++  HGGQ  + S L +G      L
Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTVCL 572

Query: 473 PNTRVLNFIPEDN 485
           P  R  N +P +N
Sbjct: 573 P--RGCNHLPHEN 583


>gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 650

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA +SHELRTPLN+ILG+  +I+    G LN  T ++ +  I R+      LI ++
Sbjct: 280 KDEFLAVLSHELRTPLNSILGWITLIQR---GKLNQTTLEQALEVIERNASIQTQLIEDL 336

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+SRI  G+  L+ ++++L+++++  +  ++  A+ K+I I   +D  ++ +  D   +
Sbjct: 337 LDISRISRGQLNLNINSVNLVELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRL 396

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV  NL SNA+KFT   G V + +         I + D+G GI    +P V   F Q  
Sbjct: 397 QQVFWNLFSNAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQAD 456

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRV 477
            +   ++ G+GLGL I++ ++  HGG   + S+   +G   I +LP   +
Sbjct: 457 ASTTRSQGGLGLGLAISRHLVELHGGTIDVESEGKGKGSVFIVMLPIRPI 506


>gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella
           avium 197N]
 gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis
           [Bordetella avium 197N]
          Length = 1142

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 164/418 (39%), Gaps = 26/418 (6%)

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            M S+    +          ++   + I  +   +       +   L  T    +     
Sbjct: 343 LMTSVAAAGLIIVTCWSFLLLLKWRVFIPAIAQSQRVFENEHLGRTLVDTAPVGLGLIAI 402

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                 +   A +                 +  S   +   L+ Q ++  +         
Sbjct: 403 HSGKPLLRSPAMM------------DADAQLLTSRQGLSGELAAQFLLHENQPAPHDYPG 450

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEE 245
                  F  I       +V++   + E  D+       +   +  + +S E R  A+  
Sbjct: 451 ALQLDLRFPTIDGSHRDLSVRMARARYEGVDVLVAAFTDVTLEKQMERVSQEARHAADSA 510

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTPLNAI G  E++    +        + ++  I  +   LL+++
Sbjct: 511 NAAKSAFLAAMSHEIRTPLNAIHGNLELLSHSALDS----AQRAHVDTIRSASDSLLSIV 566

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD S+IEAG   L      + DI    +IM    A+ K + +  +    +   +  D
Sbjct: 567 SDVLDFSKIEAGELRLEHLEYDIQDIAARALIMFSTTARAKGLVLGGEFGLHTTQPMRGD 626

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423
              + QVI NLLSNAVKFTA  G+V + +   +      ++++D+G G++  ++  +  +
Sbjct: 627 PTRVAQVINNLLSNAVKFTAA-GKVTLRMTQDATPPQLVLTVEDSGIGMSPEQMSMLFQA 685

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F Q  I I     G GLGL +   +    GG   + SK  +G      LP  R L   
Sbjct: 686 FTQADITINRRFGGTGLGLALCSRLSQAMGGTLSVTSKAGQGSCFTLRLPLDRDLPPA 743


>gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
 gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
          Length = 613

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|302337894|ref|YP_003803100.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301635079|gb|ADK80506.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 727

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 14/260 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D +  +L+     + +  +R EE N AKS FLA++SHE+RTPL  I+G +E+++   +  
Sbjct: 207 DVMRHDLQQLDEQNRDAMQRLEEANRAKSDFLANVSHEIRTPLGGIIGAAELLQNTAL-- 264

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  + ++  +  S + L++ +N++LDLS++E G   +     +L  ++     + + 
Sbjct: 265 --NDEQQHFLQILQGSSEALMSGVNDVLDLSKLEQGAMAIVPRPTNLSALLNGIATIFRP 322

Query: 342 RAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WT 396
           R ++K +E+F   +         D   +RQ+++NLL NA+KFT   G + +         
Sbjct: 323 RCRKKGLELFLTCEADEKQEYLVDPIRLRQILMNLLHNALKFTPT-GSIRLDCRSKGIQK 381

Query: 397 SGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S++D G GI + +I T+   F Q          G GLGL IA  ++A  
Sbjct: 382 EDGELMYRHDFSVQDTGIGIPQEKIETIFEKFTQIHNTEVQNFGGSGLGLHIAAVLVAKL 441

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + S+  +G      L
Sbjct: 442 GGTLEVVSEAGKGSRFFFTL 461


>gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 762

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 17/315 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV- 230
           L  + ++        LA        ++    +          +     + + L    E  
Sbjct: 169 LELRLVIQHRPACWVLAETTLVKPTVAREIRLALTDISERKALEEQLRQGEALWDSEERL 228

Query: 231 ----AKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               A+  +    + AE    N AKS  LA MSHE+RTPLN I G +E++E   +    N
Sbjct: 229 CSLNAELEARGAVRIAEVNAANAAKSHLLAHMSHEIRTPLNVITGLAELLEQGEL----N 284

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  I  +G+ LL ++++ILDLSRIEAG+  ++     L  ++          A+
Sbjct: 285 AQQQHQVRRIQEAGESLLGILDDILDLSRIEAGKLGIARQPFELHKLLARIESFQGRCAR 344

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
            K + +   I P  + +   D   + QV+ NL+ NA+KFT  GG   R+ V    T    
Sbjct: 345 AKGLSLDLDIPPLPAGAFLGDPLRLEQVLNNLIGNAIKFTNTGGITLRIQVREAETDTPY 404

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +  ++D G GI    +  +   F Q    +  +  G GLGL I++ ++   GG+    S
Sbjct: 405 LHFEVEDTGIGIEPQILEDLFQPFVQADANLTRSRGGTGLGLAISKHLVELMGGKIGAVS 464

Query: 461 KLREGVEVIAILPNT 475
           +   G      LP  
Sbjct: 465 QPGRGSTFWFDLPLE 479


>gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby]
 gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby]
          Length = 816

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  ILG  E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P         +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+       +   L     D   ++ V++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T+     + I+DNG GI      T+   F Q          G GLGL IA+  +  HGG 
Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L  +    G      LP  
Sbjct: 398 ILAGNARNGGAIFTIELPLK 417



 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                 +F+   SH+L+ PL A+      I  E +G + +E  K+Y+  + +    +  L
Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +L  +  ++G        I    ++ + I  L          +  +++ +L  +   
Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700

Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           E  +R+V   LL N+++      G + +       R     + D+GPGI +     +   
Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F       K      G+GL IA+ I+   GG+  + S+  +G     + P  +
Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810


>gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 612

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 178/366 (48%), Gaps = 14/366 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  ++         L +  +A  L+ + +S L    L   V ++  P  +   + A    
Sbjct: 212 MSDVISRHARNGAVLFVSPAAEPLLGVPVSRLLGHGLFDRVHVADRPAFLTALSDAGRGG 271

Query: 183 HVLDISLAGMLATALS-FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
               +                 T       ++    +    +  +E EV   + D T ++
Sbjct: 272 EARSVEFRIRRDVPRGDRGRCNTADFIWLEMRCRPLEPSAKNATSEAEVVAVMRDVTDRK 331

Query: 242 AEE------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +E             + ++S FLA+MSHELRTPLNAI+GFSE+I  E +  ++    KE
Sbjct: 332 EQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGFSEMIVQEDVLMISAARRKE 391

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I+ SGQHLL+++N ILD+S++E+G++E+     +    +  C  +L L+A+E  ++
Sbjct: 392 YAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRPALLNCCNLLALKARENEVD 451

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +   +L  +  D +  +Q++LNL+SNA+KFT  GG V V+     G    + + D G
Sbjct: 452 LVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAA-VEGARLALRVSDTG 510

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++  +  +F Q S +     +G GLGL I +S++A HGG+  + SKL EG  V 
Sbjct: 511 VGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVALHGGEMSVESKLDEGTTVT 570

Query: 470 AILPNT 475
            +LP  
Sbjct: 571 VMLPLA 576


>gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 489

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 10/288 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L     I   + + ++        + ++ A      +++D            +   
Sbjct: 191 ILKPLHTLKTIAERMEQGDLSQRVSITTRGEIGALAHAFNAMAD----SLSRSEQLRRNL 246

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           ++ ++HELR PL  I G+ E+++ + + P       E +  ++     L  L+ ++ D+S
Sbjct: 247 VSDVAHELRNPLMNIRGYLELLQDQVLEPTP-----ETLASLYEETSLLNRLVADLQDVS 301

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
             EAG+  L+   I L DI  + + ++Q    EK + +   I   L  + AD++ + Q++
Sbjct: 302 LAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSIPSDLPHIEADQERVAQIL 361

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++ T   G + +  G +     +IS++D G GIA   +P +   F +   +  
Sbjct: 362 RNLLSNAIRHTPSQGEICLAAGLSEAG-VHISVRDTGVGIAPEHLPYLFERFYRADFSRA 420

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            A  G GLGL I + ++  HGGQ  + S++ +G      LP   +   
Sbjct: 421 RATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCFTFTLPVAALAPA 468


>gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
          Length = 816

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  ILG  E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P         +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+       +   L     D   ++ V++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T+     + I+DNG GI      T+   F Q          G GLGL IA+  +  HGG 
Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L  +    G      LP  
Sbjct: 398 ILAGNARNGGAIFTIELPLK 417



 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                 +F+   SH+L+ PL A+      I  E +G + +E  K+Y+  + +    +  L
Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +L  +  ++G        I    ++ + I  L          +  +++ +L  +   
Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700

Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           E  +R+V   LL N+++      G + +       R     + D+GPGI +     +   
Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F       K      G+GL IA+ I+   GG+  + S+  +G     + P  +
Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810


>gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1028

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/503 (19%), Positives = 193/503 (38%), Gaps = 20/503 (3%)

Query: 4   SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63
           +R   ++D   +       L   +P++     + I    ++L   + ++   +       
Sbjct: 274 ARNRADRDSLRVSVEAFTLLT--FPAERARVADTIQQRADALRAHTEVVLDLLQRHQAES 331

Query: 64  TW--FTQNPIFPMWSLITLAVYAANL------SLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
                    +   +    L   A  +       L ++ +    +  E             
Sbjct: 332 VQQGIRAAWVMAAFLFAMLLGIALVVIEPAVRLLRRQHVAVTTRSVEFERLAQVAQRTAQ 391

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            +    ++  L      +      + +    +    S          V   + P  V + 
Sbjct: 392 QLADAQSMARLGSWSFDSATRHLQWSAELFQLFGRDSTQWTPTPELVVDDQYHPDEVPVL 451

Query: 176 TQAIM----SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
             A+     +     + +          +      + +               + +    
Sbjct: 452 LAALQHTQETGEPYSLLMRTAERNPAVRWVRAEGRVQRRADGTRVGLMGTVMDVTDAIER 511

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    + ++ AE  N +KS FLA+MSHE+RTPL AILG ++++  E +         + +
Sbjct: 512 EEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGHTDLLREEAVRSAAPRDQVQGL 571

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I R+G+HLL ++N+ILD+SRIEAGR E+   A  L  ++ +   +++ RA  K + + 
Sbjct: 572 ETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDLPALLLDVESLMRARAAAKGLTLE 631

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKD 407
            ++  ++   V+AD   +RQ+++NL+ NAVKFT   GRV +  G     GQ    I++ D
Sbjct: 632 TRLRNTVPSRVFADPTRVRQILMNLVGNAVKFT-AYGRVTIEAGVERAEGQEWLTITVDD 690

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGV 466
            GPG+ E +   +   F Q   ++     G GLGL I + +    GG    + +    G 
Sbjct: 691 TGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICRRLATLMGGHVRLVHTAPGRGS 750

Query: 467 EVIAILPNTRVLNFIPEDNHEST 489
                L    + +    D  +ST
Sbjct: 751 RFELRLVLQPIASAACVDQLDST 773


>gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 606

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 127/256 (49%), Gaps = 5/256 (1%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E      EL    +   E RK AE  N +K  F A +SHELR PLNAILG+S++I     
Sbjct: 198 ETKMKTEELGRFLAKEREMRKDAERVNHSKDEFFAMLSHELRNPLNAILGWSQLILQ--- 254

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +N+E+ ++ I  I R+ +    LI ++ ++SRI AG+  L    I L  +    +   
Sbjct: 255 GTMNSESVRKGIETIERNAKIQNKLIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSA 314

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A+ K + + + ID  +  V ADE   +QV+ NLLSNA+KFT   G V + V   +G 
Sbjct: 315 VPVAEAKKVRLRKIIDSEVGFVLADENRFQQVLWNLLSNAIKFTPAEGEVEIHVRR-AGS 373

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + +KD+G GI    +P V   F Q        + G+GLGL I + ++  H G  +  
Sbjct: 374 RAEVKVKDSGIGIKREFLPHVFDRFRQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAE 433

Query: 460 SK-LREGVEVIAILPN 474
           S    +G      LP 
Sbjct: 434 SNGEGKGSVFTVSLPL 449


>gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 615

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 8/256 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            ++ +    + L  E +  +EE N  K+ F+A+MSHE+RTP+N ILG  EV+  E + P 
Sbjct: 216 QVLEKQREKELLLQEAQHESEEANRIKTEFIATMSHEIRTPMNVILGSLEVLNEEDLSPK 275

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    K +      +   LLN +N++LD +R+E+G+  LS+   S   +VR    + + +
Sbjct: 276 S----KRFAEISQSAAHLLLNQLNDVLDFARLESGKVALSQGEFSPYKLVRSIEDIFRNQ 331

Query: 343 AQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           A++K ++        P L  V +DE  + Q++ N++ NA+KFT+  G + +   W     
Sbjct: 332 AEQKGVKFHVDIGFSPELFMV-SDEGKISQILTNIVGNALKFTSS-GSITIRARWHETEQ 389

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +I D G GI + +I ++L  F Q   +      G G+GL I  +++    GQ  I S
Sbjct: 390 LIFTISDTGIGIDKDKIASILQPFVQSDASFSRRYGGAGMGLAITSALVELLCGQLEIDS 449

Query: 461 KLREGVEVIAILPNTR 476
           ++ +G +    LP  +
Sbjct: 450 QVAKGTQFTVRLPIAK 465


>gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
 gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
          Length = 613

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  Y L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEYRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 1001

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 10/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E R  AE  N AKS FLA+MSHE+RTPLNAI+G  E++    + P   
Sbjct: 496 ITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAP--- 552

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T +  +  I  S   LL +I+++LDLS+ E+ +  +      + D++ +     +  A 
Sbjct: 553 -TERRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLAS 611

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
            K +E+  ++ P L+     D   +RQ++ NL+ NA+KFT   G V +          G 
Sbjct: 612 AKGLELRCRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTER-GSVSIDAQRVVRSAGGA 670

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI    +PT+   + Q   +I     G GLGLP+ + I     G   + 
Sbjct: 671 RVEIRIADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVD 730

Query: 460 SKLREGVEVIAILPNTRVLN 479
           S+  EG  +   LP      
Sbjct: 731 SREGEGTTMCVTLPLPEAPP 750


>gi|304310971|ref|YP_003810569.1| Probable sensor histidine kinase [gamma proteobacterium HdN1]
 gi|301796704|emb|CBL44916.1| Probable sensor histidine kinase [gamma proteobacterium HdN1]
          Length = 824

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 22/420 (5%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
            L+TL    A     K  +++      +      LL   +   + W L    E  T    
Sbjct: 199 VLLTLLGAIAGGYFSKSFLDTRTHAPRLNALFSVLLSFGMIC-VLWVLAAKNEFPTGIAN 257

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            LT+  SAT +I+  +       +     + +  VV   +   +    +L      ML  
Sbjct: 258 LLTVALSATAIISGIVELRRGVSMARYFLVGWISVVTGSTLWVLTLSGILPYIHGAMLYV 317

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +               +I   QAE+  L    + AK+L ++T ++    N  K  FL++
Sbjct: 318 HIGCLLETVLLSLALADRINQLQAERARL---QQQAKALLEDTNRKLALSNRFKDEFLST 374

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTP+N I+G SE++++  +    ++    Y+  I RS Q ++ ++ +IL  +++ 
Sbjct: 375 ISHELRTPMNGIIGSSELLKMTHL----DDEQNNYLHQIARSSQGMMRMVEDILAYTQLN 430

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
             R+   +  +++  +  E     + R+Q + +       P L   V  D   +  ++ +
Sbjct: 431 TDRHSFEQKPVNITRLFEELCSHFRARSQAQRLSFSSHFSPDLPRFVRGDAGKIDMILRH 490

Query: 375 LLSNAVKFTAIGGRVHVTVGWTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           LL NA KFT  GG +  +    +              SI D G G+ +    +V   F Q
Sbjct: 491 LLDNACKFTENGG-IRFSATKIAPLAKDPQGAIWIRFSISDTGHGVPKELHESVFEMFRQ 549

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV----LNFIP 482
              ++   + G+G+GL + + I+    G+    S +  G +V   LP   V    L  IP
Sbjct: 550 VDASMTRKQGGLGIGLALCKQIVVRMRGKLEFLSDVNHGTDVHVYLPFQPVTAQELESIP 609


>gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 392

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 129/233 (55%), Gaps = 5/233 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R ++    +  F+A++SHEL+TP+ AI G++E +    +   + E  K++I  I      
Sbjct: 156 RLKQLENVRRDFVANVSHELKTPVTAIKGYAETLLDGAI--NDKENSKKFIEIIKNQADR 213

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++L LSRIE G  ++ +  I L +++     +L+ +AQ+K + + ++I P  + 
Sbjct: 214 LNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKEIPPETA- 272

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++AD+  M Q+++NL+ NA+KFT   G V V     + +G  IS++D G GI +  I  +
Sbjct: 273 IYADQYRMSQIMINLVDNAIKFTEK-GFVKVRFFKENSKGV-ISVEDTGIGIPKEHIHRI 330

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A      G GLGL I + ++  HG Q  I S++ +G +V  ++P
Sbjct: 331 GERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIP 383


>gi|15889688|ref|NP_355369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157594|gb|AAK88154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1131

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 162/351 (46%), Gaps = 7/351 (1%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            +A +I+  +   +   +         A +     ++ ++    A +      F      
Sbjct: 574 GMAAAIAVTAIGGILALIAHQVGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHD 633

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  +           IA  +   +   + ++ AE  N AKSR++  +SHELRTPLN
Sbjct: 634 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLN 693

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG+++++E +   P      +  I  I RS  HL  LI+ +LD+S+IEAGR ++  + 
Sbjct: 694 AVLGYAQILERDETIPAP---RQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNE 750

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           I++ D + + + M + +AQ K +E   +   +L   V  DEK +RQ+++NLLSNA+KFT 
Sbjct: 751 INIKDFLDQVVDMFRPQAQAKGLEFRHERTAALPQYVRTDEKRLRQILVNLLSNAIKFTD 810

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   V +   +    ++ D G GIAE ++  +   F +G         G+GLGL I
Sbjct: 811 E-GSVTFDVAYR-SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTI 868

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + +    GG+  + S+   G      L  + V         E T  + Y+
Sbjct: 869 TRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKT-IRSYS 918


>gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
            [Leptosphaeria maculans]
          Length = 2006

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 114/254 (44%), Gaps = 24/254 (9%)

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 1284 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NSEQLEHVNIIKASTDSLLNLIND 1339

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
            ILDLS++EAG  +LS   + +  ++ E   +    A +K +E+   ++  +   V  D+ 
Sbjct: 1340 ILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPTMVKGDKF 1399

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416
             +RQV+LN++ NA+KFT   G + V                       + D G G  E E
Sbjct: 1400 RIRQVLLNVVGNAIKFTNR-GEIFVRCKMQPPDRSGLLKEHETMIRFEVVDTGQGFTEAE 1458

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472
               +   F Q   +      G GLGL I+   +  HGG+   +S    G          L
Sbjct: 1459 AKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFFFTIKFGL 1518

Query: 473  P----NTRVLNFIP 482
            P      +V    P
Sbjct: 1519 PTPEDFPKVQPSTP 1532


>gi|261251233|ref|ZP_05943807.1| sensor protein TorS [Vibrio orientalis CIP 102891]
 gi|260938106|gb|EEX94094.1| sensor protein TorS [Vibrio orientalis CIP 102891]
          Length = 959

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/365 (25%), Positives = 163/365 (44%), Gaps = 23/365 (6%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +     +LI   +  +S          +   +        +      +++  G      
Sbjct: 344 VLGMVIVVLIVWKVVYVSVLKRLAEYSSALLSIAKGQLQVDVTVKGNDELAHMGQAIITA 403

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDE-------TRKRA 242
               +    + +S  K      E  + + EL        + A    +E        R  A
Sbjct: 404 RNTAHALKVVAESEAKAKRELQEHKEHLEELVTERTHQLQNANVRLNEEVENHARARSLA 463

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ + AKS FLA+MSHE+RTP+N +LG + +++   +          Y+  I+RSG  LL
Sbjct: 464 EQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDAGLDS----KQGYYVDVINRSGTTLL 519

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N++LD S+IEAG  E+     +L  +V +   +L  RA+EK++E+   I+  +   W
Sbjct: 520 AILNDVLDYSKIEAGHLEIRPIDFNLYSMVDDTKHLLDGRAKEKSLELACTIESDVDKFW 579

Query: 363 -ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
             D   + QV+ NL+ NA+KFT  G   ++V++           + D+G GI+E E  T+
Sbjct: 580 RGDVTRISQVLNNLVGNAIKFTDRGYVDIYVSLDPDLDGNVLFEVSDSGVGISEQEQVTL 639

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             +F Q +  + S   G GLGL I++ I+    G+ L+ S + EG      +P T V   
Sbjct: 640 FDAFTQATGGLSSK-GGTGLGLAISKRIVEAMNGKLLVESHVGEGSRFWFSIPLT-VGQA 697

Query: 481 IPEDN 485
           + E  
Sbjct: 698 VEESE 702


>gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 908

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E       E + +AE  +  KS FLA+MSHE+RTPLNAI+GFSE++    +   +    +
Sbjct: 530 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  + + LL LIN+ILDLS+IE+G  E      +L  +  E   M+Q +    ++
Sbjct: 586 EYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKITNPDV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E           ++ D   ++QV +N L+NA+K T   G + +  G   G    I ++D+
Sbjct: 646 EFQMANSGPDCWIFLDRNRLKQVWMNYLTNAIKCT-KSGHIKMGYGIERGG-IRIYVEDS 703

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI       V   F +         QG GLGL I+++I+   GG+    S    G   
Sbjct: 704 GVGIPIELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPDVGSTF 759

Query: 469 IAILPNTRVLNF--IPEDNHESTQY 491
            A +P    +     P  +  S Q 
Sbjct: 760 WAWIPCEISIQEEDSPTVSQPSKQQ 784


>gi|229551250|ref|ZP_04439975.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|229315413|gb|EEN81386.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
          Length = 636

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +   +++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|91978537|ref|YP_571196.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91684993|gb|ABE41295.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 876

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 135/305 (44%), Gaps = 16/305 (5%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A     ++    +D  +  +          +T           +        + E   A
Sbjct: 302 AATVAAKMVMREPMDELIVHVTIGGSPRLWSLTAKPMFDYNDEFAGYRGVGRDVTERRRA 361

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                   ++AE EN AKS FLA MSHE+RTP+N +LG +  +    +    +   +  +
Sbjct: 362 --------EQAEAENRAKSGFLAMMSHEIRTPMNGVLGLANSLLETKL----DPDQQHAV 409

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG +LL ++N+ILDLS++E GR E  +   S   +V     +++  A+ K + + 
Sbjct: 410 ATIRDSGDNLLRILNDILDLSKLEVGRLEFEQVNFSPSVLVDAVRSIVEPNARAKGLALK 469

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKD 407
             +DP L   +  D   +RQV+LNL  NAVKFT  G   + +T          I   + D
Sbjct: 470 IDVDPRLPPALTGDAARIRQVLLNLAFNAVKFTDHGSVSIVLTCVKRDDAHATIEWQVTD 529

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   ++ ++ T F QG  +I     G GLGL I++ I+   GG   + SK  EG  
Sbjct: 530 TGIGIPPEQMGSLFTEFAQGDASINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGST 589

Query: 468 VIAIL 472
               L
Sbjct: 590 FRFSL 594



 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 11/231 (4%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITL----HVESLFRVSPILPLFV 56
           M + R+ +E  +  L S      G       D D   + L     ++S+ R+ P+     
Sbjct: 8   MTKVREPREDWISRLASWLRGR-GAGTLVPADIDERELRLIRAAQIQSVSRLVPVTMSIN 66

Query: 57  LLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
           ++ A +          +     W     AV    +    K   +  +          + V
Sbjct: 67  VINATLVVMVFWDTGPHAFLLAWFGAICAVAGLAMRSWHKSRRAPPREAST-NATRRMSV 125

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
             + +GL W  + +       P    I     +   +S  A +   +P A     + +V+
Sbjct: 126 QALILGLIWGAMPIALFPNAAPSDQLI-IGCLVTGMMSGGAFALSTVPRAGLAYTWAMVL 184

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
             +   I+      +     L     F +       +     L  + E + 
Sbjct: 185 CAAISLILCTGTSYLITIAFLMLYALFISRNLVSHGEMFFDNLRAKFELER 235


>gi|167629620|ref|YP_001680119.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592360|gb|ABZ84108.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 481

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 5/230 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A  SHELRTPL+ +    +VIE +    L+ E  ++ + D+      +  L+ ++
Sbjct: 251 QREFVADASHELRTPLSILQSSIDVIEADDARNLS-EFSRQVLADMKDEVGRMTRLVGDL 309

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L L+R ++G+ EL   +  L  +  +     Q RA+ + + +  +  P+L  V+ D + +
Sbjct: 310 LTLARADSGKLELQRESFDLRPVAEQLFRTFQHRAKAQGLTMEMEGPPTLP-VFVDRERI 368

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425
            Q++  LL NAVK+T  GG+V +++  + G       + ++D G GI+  +   +   F 
Sbjct: 369 TQLLCILLDNAVKYTPEGGKVSLSLARSGGGHNDTLQVKVQDTGIGISAEDQQHIFERFY 428

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +          GVGLGL IA+ I+  HGG   + S   +G   I I+P  
Sbjct: 429 RADKGRSRQAGGVGLGLSIARWIVEAHGGTIRVESAPGKGSSFIVIVPAA 478


>gi|88812355|ref|ZP_01127605.1| sensor histidine kinase/response regulator GacS [Nitrococcus
           mobilis Nb-231]
 gi|88790362|gb|EAR21479.1| sensor histidine kinase/response regulator GacS [Nitrococcus
           mobilis Nb-231]
          Length = 686

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 173/419 (41%), Gaps = 18/419 (4%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L TLA +   +    + +     +  +Y         +         L +  P T     
Sbjct: 106 LGTLANHLLRVLPAGEHLQPSAAVLRIYSSTYTASSLRALPAAPLGSLEIELPVTNAARA 165

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDIS------- 188
                    L+AL+    +  +          P+  +    +      +   +       
Sbjct: 166 QLEEILLPGLLALAALFCAGLLALLTAGTILRPMRRLTQQIRKFERDSLQSWAPIGCQGQ 225

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +     +  T +     +   +I    +E    +  LEV  +  D  R+RA E +  
Sbjct: 226 LGQLETAVETMVTALRQRQHRFEERIHCTTSELRQTLRALEVQNAELDVARRRALEASKI 285

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA +SHE+RTP+N I+GF+E+++   +    +   ++++  I  S  +LL +IN+I
Sbjct: 286 KSQFLAKVSHEIRTPINGIVGFAELLQHSPL----DAEQRDHVDTIKVSCANLLAIINDI 341

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKG 367
           LD S+IEAG+ E+      + D V E I +L   A  K +E+           +  D   
Sbjct: 342 LDFSKIEAGKLEIDNMVFDVRDSVEEVITLLAPTAYSKGLELVQLIYADVPPKLNGDPVR 401

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTS 423
           +RQ++ NLL NA+KFT   GR+ V V             I+I D G G+ E +   +  +
Sbjct: 402 IRQILTNLLHNAIKFTEQ-GRIVVRVILEEESAVDATLRITINDTGIGLGENDHSKLFRA 460

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           FGQ   +  S   G GLGL I++ ++   GG     S+ ++G      L   +  +  P
Sbjct: 461 FGQAGGSPGSHCSGTGLGLIISKQLVEQMGGSIGFESEPQKGSTFWFALSLQKQPSIAP 519


>gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1053

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 14/272 (5%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +++  +   +++  D++A    AK+  +   K + E +LAKS FL++MSH++RTP+NAI+
Sbjct: 632 QNHKTVCLVRSDVTDMLAAERAAKTELERALKLSREASLAKSDFLSAMSHDIRTPMNAIM 691

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + + +  +  P+      + +  I  +  HLLNLIN++LD+++IE  +  L+   I L
Sbjct: 692 GMTTLAKANSGDPV---RVLDCLQKISAASGHLLNLINDVLDMNKIERAQITLNREKIYL 748

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
            D++++   ++  +A++  +              + D   + Q+++N+L NAVKFT  GG
Sbjct: 749 PDLIKQIGEIIAPQAEQAGLCCEILPGGIRNPCFYGDTLRISQILINILGNAVKFTPRGG 808

Query: 388 RVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGL 440
            V        G           +++D G G+A+  +  +   F +   +   S  +G GL
Sbjct: 809 SVRFLAEEIPGAAGSGQACYRFTVRDTGIGMAKETLDHLFEPFVR---SRAVSRVEGTGL 865

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I + ++   GG   ++S+  +G      L
Sbjct: 866 GLSIVKGLVDLMGGSVSVQSEPEKGTTFFVEL 897


>gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
 gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
          Length = 585

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+  I GF E I+   +   +  T   +   I    + L  L+N+I
Sbjct: 358 RRDFVANVSHELKTPITTIRGFIETIQENHIT--DEATLGRFYSIIADESERLTRLVNDI 415

Query: 309 LDLSRIEAGRY--ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           L LS +E  +   E     I +   +     +L++ A+ K IE+  + +  + SV  +  
Sbjct: 416 LILSHLENNQRSGEDKREVIGVNQEILRIFDILKMTAESKRIELRYQKEGDI-SVIINPD 474

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             RQ+++NL+ NA+K+T  GGRV V+V + +G    I ++D G GI E +IP +   F +
Sbjct: 475 DFRQMMINLVDNAIKYTDEGGRVDVSV-YENGAHFCILVEDTGCGIPEEDIPRIFERFYR 533

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +      G GLGL I + I+ N+ G   + S +  G      LP 
Sbjct: 534 VDKSRSKENGGTGLGLAIVKHIVQNNKGTIEVTSSVGIGTTFKVTLPK 581


>gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1017

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +V +      ++ AE  + AK+ FLA MSHE+RTPLN ++G   ++E    G  
Sbjct: 479 HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLE----GTF 534

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   KEY+  I  SGQ+LL L+N+ILDLSRIE+G+ +L    +S   +  E + + +  
Sbjct: 535 LNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPM 594

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A+EK + +  ++  ++   + +D   +RQV+ NL+ N++KFT   G++H++V        
Sbjct: 595 AEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK-GKIHLSVEAEKFPND 653

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD G GIAE ++  +  +F Q   +      G GLGL I++ +     G+  
Sbjct: 654 KLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEIT 713

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++S++  G E    +   ++   IP    E
Sbjct: 714 VKSQVNSGSEFSLSILTEKLEYEIPAGVQE 743


>gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 1017

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +V +      ++ AE  + AK+ FLA MSHE+RTPLN ++G   ++E    G  
Sbjct: 479 HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLE----GTF 534

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   KEY+  I  SGQ+LL L+N+ILDLSRIE+G+ +L    +S   +  E + + +  
Sbjct: 535 LNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPM 594

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A+EK + +  ++  ++   + +D   +RQV+ NL+ N++KFT   G++H++V        
Sbjct: 595 AEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK-GKIHLSVEAEKFPND 653

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  +KD G GIAE ++  +  +F Q   +      G GLGL I++ +     G+  
Sbjct: 654 KLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEIT 713

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++S++  G E    +   ++   IP    E
Sbjct: 714 VKSQVNSGSEFSLSILTEKLEYEIPAGVQE 743


>gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 754

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 126/254 (49%), Gaps = 6/254 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++    E R RA E + AKSRFLA  SHE RTPLN I+G S       +  L       Y
Sbjct: 217 SERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMS----GLLLETLLTPEQTTY 272

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  SG  LL+LI ++LD SRIEAG+ EL      L D++ +   +L  RAQ + +EI
Sbjct: 273 VKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQLEI 332

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +D +L   V  D   +RQV+LNL  NA+KFT+ GG   + V           ++D G
Sbjct: 333 ASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRFMVRDTG 392

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA      +   F Q    I  +  G GLGL I+  I+   GG+  ++SK   G    
Sbjct: 393 IGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPDSGSTFE 452

Query: 470 AILPNTRVLNFIPE 483
            ++P     +  PE
Sbjct: 453 VLVPL-PAQDRAPE 465


>gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 867

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 138/277 (49%), Gaps = 20/277 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +L  A++  ++ R+ AE+ N AK+ FLA   HE+RTPL AILGF+EV+         +
Sbjct: 284 LTDLRRAQAELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLHERLGH---D 340

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +  I  +G HL  L+N+ LDLS+IE+G+ EL+ ++I   ++  E   + Q +AQ
Sbjct: 341 PQSAEALEAIQSAGSHLKMLLNDFLDLSKIESGKLELAPTSIDPWELAVEVATINQGQAQ 400

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------- 393
            K I +  + + S    V  D   +RQV+ NL+ NA+KF+  GG V +++          
Sbjct: 401 AKGIRLGVEANASTPLLVHVDTTRLRQVLFNLVGNAIKFS-QGGDVTISLIGSEPNASDS 459

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMAN 451
                      ++D GPG+   ++  +   F Q   A    +   G GLGL I++S++  
Sbjct: 460 DTDGRSTLVWQVRDQGPGMTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVEL 519

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            GG   + S    G  V   LP   +    P  NH S
Sbjct: 520 MGGTIQVVSHPGRGTTVQFELP---IDPATPRRNHPS 553


>gi|331238274|ref|XP_003331792.1| sensory/regulatory protein rpfC [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310782|gb|EFP87373.1| sensory/regulatory protein rpfC [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1570

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 138/262 (52%), Gaps = 11/262 (4%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             I + Q+  + ++ +L  A   + + ++ AE  +LAKS+FLA+ SHE+RTPLNAI+G   
Sbjct: 1033 DIRALQSNINTMVTKLRTAFESNVKAKEAAEAHSLAKSQFLANTSHEIRTPLNAIIG--- 1089

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +  +T+G       +E +  +      LL +IN+ILD+++IEAGR  L     SL +++
Sbjct: 1090 -LTFDTLGSNLTREQRENLNLVRGQADALLRIINDILDITKIEAGRMALERCTFSLREVI 1148

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             E +  L   A  KN+++F +I P++   V  D   + QV+ NL+ N+ KFT   G + +
Sbjct: 1149 FEALTSLAFGAAAKNLDVFLEIHPAVPDLVVGDGSRLGQVVKNLVGNSQKFT-TSGSITL 1207

Query: 392  TVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            T                 + D G GI E ++  +  SF Q   ++     G GLGL I++
Sbjct: 1208 TAHLMGTDPEGRWRVEFHVIDTGIGIEEDKLQRIFDSFMQADGSVTRKYGGTGLGLTISR 1267

Query: 447  SIMANHGGQFLIRSKLREGVEV 468
            +++   GG   + S++ +G + 
Sbjct: 1268 NLVQMMGGHLDVESEVGKGSDF 1289


>gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  LE +      +  RA+  N AK+ FLA++SHELRTPL +I GF+E++E         
Sbjct: 341 VRRLEASNVALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKRI----EQ 396

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             +K+  G I R+ +HL  L+ +ILD ++IEAG   +  + +++  +VR       + A 
Sbjct: 397 PKFKDQAGMIRRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAA 456

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +E+  +I   +   +  DE  ++QV+ NLLSNA+KFT  GG V + V   + +   +
Sbjct: 457 EKGLELRVQIADDVPETLLTDELRLKQVLNNLLSNAMKFT-AGGHVAIEVERDATQ-LRL 514

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D GPGI   +   +   F Q    +     G GLGL +++S+    GG   + S   
Sbjct: 515 HVVDTGPGIPAEQHELIFERFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPG 574

Query: 464 EGVEVIAILPN 474
           EG      LP 
Sbjct: 575 EGARFTLTLPL 585


>gi|241663921|ref|YP_002982281.1| histidine kinase [Ralstonia pickettii 12D]
 gi|240865948|gb|ACS63609.1| histidine kinase [Ralstonia pickettii 12D]
          Length = 610

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79
             GL   + ++ D     L          I    VL    +  ++  +  P    W LI 
Sbjct: 11  KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 70

Query: 80  LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L + A       G +   + + +      W   + V     G+ W     +   + + E+
Sbjct: 71  LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 130

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195
            ++     ++I ++ +A+ +     +  L     ++A              + L G+L  
Sbjct: 131 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 188

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +  T    ++  + V+ +  + E   L      A+   DE ++RA   +  KSRFLA+
Sbjct: 189 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 241

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SH+LR P++AI+   E +         +E+    +  +      +  L   +LDLS++E
Sbjct: 242 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 297

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           + +   +   + L +++ E +      A+ K + +  +I P      A+   +R+ + NL
Sbjct: 298 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLAARIPPLPVYGMAEPVLLRRALFNL 357

Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L NA+++T  GG  V + V     +   I + D G GIA      + +++ Q     +  
Sbjct: 358 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 414

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            QG+GLGL I +  +    G F +RS    G      L         P       + K
Sbjct: 415 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 472


>gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 927

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 8/263 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D+  AE  V + +       A   N AKS FL+ MSH++RTPLNAI+G S +     +  
Sbjct: 388 DEQRAEQAVQEQVLKNALSAARMANQAKSDFLSRMSHDIRTPLNAIIGMSTI---SQLKM 444

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E   + +  I  S ++LL+LIN+ILD+SRIE+G+  LS      ++++     ++  
Sbjct: 445 KEPEVLADCLSKIDVSSRYLLSLINDILDMSRIESGKMALSSERFDFVELIGSINTIVYP 504

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSG 398
           +A    +        SL   +  D   + Q+++NLLSNAVKFT  GG++ V +     S 
Sbjct: 505 QAVAGKLAYQIHQHESLDRYYEGDTLRINQILMNLLSNAVKFTPEGGKIDVHISESRRSN 564

Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
              YI   + D G G++   +  +   F Q +  +   + G GLGL I  S++   GG  
Sbjct: 565 GFAYIEFRVSDTGIGMSSDFMKRLYLPFEQETDDMARNKVGSGLGLSIVYSLVQIMGGTI 624

Query: 457 LIRSKLREGVEVIAILPNTRVLN 479
             +S+   G     ++P      
Sbjct: 625 DAKSEKNRGTTFTVVIPLRLAAP 647


>gi|212638129|ref|YP_002314649.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559609|gb|ACJ32664.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 474

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    + +F+A  SHELRTPL+ I    E ++++     ++   ++ I  +    + + 
Sbjct: 239 QDAYNRQRQFVADASHELRTPLSVIYSSVEALKMDA-SLTSDPFSQKTIERLGDETKRMT 297

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LIN++L L+R +  + ++      L       +  LQ  A +KNI +       +  V 
Sbjct: 298 KLINDLLTLARTDDAKLQIERKPFELRACAERTLQSLQELANKKNITLQFHASEQIEFV- 356

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPT 419
            DE    Q++  LL NA+K+T  GG V +++        +   +S+ D G GIA   +P 
Sbjct: 357 GDEDKCTQLLYILLDNAIKYTPEGGTVSLSLAQHVIKQRKVVTMSVADTGIGIAPEHLPR 416

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +   F +   A      G GLGL IA+ I+  H G   + S++ +G       PN R 
Sbjct: 417 IFDRFYRADKARTRQIGGHGLGLSIAKWIVEAHEGNIHVESEVGKGTTFTITFPNERA 474


>gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 782

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 104/284 (36%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L      +   + + +    +L          ++RAE  + AK+ FLA+MSHELRTPL
Sbjct: 499 RRLMAVIDDLSIARRDAERKAVQLTEMNQNYAAEKERAETASSAKTTFLANMSHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSE++   T GP+    Y EY  DIH+SG +LL LIN+ILD+++IEAGR  L+  
Sbjct: 559 NAILGFSEIMRQGTFGPIGCPKYGEYAEDIHQSGHYLLKLINDILDMAKIEAGRLVLNHE 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L +I  E   +++++A +K I +   +   +  +  D +  +Q++LNLLSNAVKFT 
Sbjct: 619 TVDLSEIATETGKIIEVQADQKAICLDADVPERM-ELTVDRRATKQIVLNLLSNAVKFTD 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG V + +  T G    I+I DNG GI    + ++   F Q    +    +G GLGL I
Sbjct: 678 NGGTVKMKL-RTVGDAALITIADNGMGIPRAALKSLGKPFEQIENELTRTNKGTGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           A+S++A  GG+  I S++ EG  V   LP T         +  +
Sbjct: 737 ARSLVALQGGRMRISSQVGEGTIVAIRLPLTPAPAQTEALDTAA 780


>gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 571

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 124/268 (46%), Gaps = 10/268 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++    ++  AE    + E    +      ++ AE  + AKS FLASMSHE+RTP+N +L
Sbjct: 142 RNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTPMNGVL 201

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++     +    +E  +EY+     S + LL LIN+ILD S+IEAG  EL      L
Sbjct: 202 GMLDLALDTPL----DEEQREYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQVFRL 257

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              +     M   RA+EK +     +   +   +  D   +RQV++NLL NA+KFT   G
Sbjct: 258 RKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDPMRLRQVLVNLLDNALKFTEA-G 316

Query: 388 RVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           RV + V              S+ D+GPGI +     +   F Q   ++    +G GLGL 
Sbjct: 317 RVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFVQADGSLSRRHKGTGLGLA 376

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + +    GG   + S   +G      
Sbjct: 377 ICKRLALLMGGDIRVDSAPGQGSTFHFT 404


>gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 810

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 13/283 (4%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             + D    L   +    + R+ AE  N AKS FLA+MSHE+RTPLNAI+G + ++    
Sbjct: 408 TARIDAENALRQNQQDLVQARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVER- 466

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
              L+    KE   D   +  +LL++I+++LD+S+IEAG+ E+         ++ +   M
Sbjct: 467 ---LDAGELKELAKDSMAAANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERM 523

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
                +EK +     +  SL   + +D   ++Q+ +NLLSNA+KFT   G + + +  ++
Sbjct: 524 FGAIVREKGLRFDVSLGASLPGLLLSDPARIQQIGVNLLSNALKFTEQ-GTIRLRLTGST 582

Query: 398 GRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +     + D+G GI    I  V + F Q  ++      G GLGL I++ +    G
Sbjct: 583 LDDSTVQLDLIVSDSGKGILAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLG 642

Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493
           G   + S++ EG      +P   + RV + +     +  Q  C
Sbjct: 643 GSIKVESRIGEGSTFTCSIPCQISKRVTSELDSAARDEGQKIC 685


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 180/452 (39%), Gaps = 30/452 (6%)

Query: 58  LVANIGTWFTQNPIFPM----WSLITLAVYAANLSLGKKVMNSDIKIG-EVYVWRIWLLV 112
            +A    + +     P+    W      +      L    M   + I  +    +++ ++
Sbjct: 110 FLAGFSDYMSWKGYAPIVRDSWGQGFQLLRTVMWLLTTPAMVYLLSIISDFSRLKVYSVM 169

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172
               + + + +L  +         +  Y  A  L A  + ++ +               V
Sbjct: 170 LADVLMITFGILAFLAYNKV--MSILFYMVAWCLFAYVVHSMWSMFHASIAEARHDSSRV 227

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-------------SNVKILSCQA 219
           +L    + ++ +        +   +      T                  S +       
Sbjct: 228 SLEVLRLFAVGLWFTFPVIWIVVKMGLVDIRTEEWTWCACDFLGKVMFSSSLLHGNFLTI 287

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+  LIA   V +    +  +  ++    K RF++SMSHELRTPLN I+G S+ + + + 
Sbjct: 288 EQRRLIAMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSC 347

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +N++  K  I  I  SG  LLNLIN+ILD + +  G+  +    ++L  +V + I + 
Sbjct: 348 GEINDQALKT-ITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLC 406

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           Q  A+   +++   +  ++  V  D   + QV  NL+ N+ KFT   G + ++       
Sbjct: 407 QPLAKR-GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHS-GNISISAA-VKDD 463

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +++ D G GI E +   +  +F Q  +++     G GLGL + + ++  HGG+  ++
Sbjct: 464 EVEVAVADTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVK 523

Query: 460 SKLREGVEVIAIL------PNTRVLNFIPEDN 485
           S+  +G      L      PN       P ++
Sbjct: 524 SRENQGTTFYFTLKIHSEHPNEGQPQMTPTES 555


>gi|83589978|ref|YP_429987.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572892|gb|ABC19444.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 469

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 11/295 (3%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSC-----QAEKDDLIAELEVAKSLSDETR 239
           L   LA      +   T +   + +               E   L A      +      
Sbjct: 178 LGYILARTALRPIDRLTQVAEQIGEGKDLDQRVPYQGPMDEVGRLAATFNAMLARLQRAY 237

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            R EE   A+ RF+A  SHELRTPL  I G  +++    +         E + DI    +
Sbjct: 238 TRLEEAYSAQRRFVADASHELRTPLTTIRGNVDLLRK--VQGQGEAWQDEALADIASEAE 295

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  L+N++L L+R +AG+ E+    + ++ +++E      L        I  +    + 
Sbjct: 296 RMSRLVNDLLTLARADAGQ-EIKREPLEILPLLQEVARQAPLLGTATFTAIGLENLAGV- 353

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  +   ++Q+   LL NA K+T   G++ + V     +   I ++D GPGI   ++  
Sbjct: 354 HIMGNRDYLKQLFFILLDNAFKYTPSEGKIDLIVNVEPQQRLIIKVRDTGPGIPPRDLEH 413

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +      S  +G GLGL IA+ I+  H G   + S + +G      +P 
Sbjct: 414 IFERFYRADATRSS--EGTGLGLAIARWIVEQHQGHIGVESTVGKGTTFTITIPL 466


>gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 938

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 13/266 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +  L+  +    + ++ AEE + AKS FLA MSHE+RTPLN +LG +E+ E  T+   
Sbjct: 534 RDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESATL--- 590

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  + ++     SG HLL LIN+ILDLSRIEAG   +      L   VR     + + 
Sbjct: 591 -EERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVL 649

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWTS 397
           A++K + +  ++D  +   +  D   +RQ+++NL+ NA+KFT  GG + +          
Sbjct: 650 AEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRAVG 709

Query: 398 GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S+ D G GI +    T+  +F +   + +    G GLGL I + ++   GG+
Sbjct: 710 QGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQV--GTGLGLSICRRLVEMMGGR 767

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481
             + S++  G      LP  + +   
Sbjct: 768 IWLESEVGVGSTFHVSLPFGQQVASA 793


>gi|300021814|ref|YP_003754425.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523635|gb|ADJ22104.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 294

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/244 (34%), Positives = 138/244 (56%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+      R   E  +  KS F+A+MSHEL+TPLN ++GFS+++       L ++   E
Sbjct: 30  RARVAEHSARIETELASKVKSEFIANMSHELKTPLNTVIGFSKLLTQHQERRLPDKEIVE 89

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y   I+ +  HLL++IN+ILD+S++++G+Y +    I+L DI+ + I     +++  +I+
Sbjct: 90  YATLINDAAGHLLSVINDILDISKLQSGKYAIDSREINLRDILADSIDAFHHQSRVGDID 149

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +   I   L  +  D   ++Q+  N+LSNA+KFT   G V V    T+  G  ++I+D+G
Sbjct: 150 VDVAIAADLPLIRGDAVKLKQIFTNVLSNAIKFTPADGTVAVKAQRTADHGAIVAIRDSG 209

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++  EI   +  FGQ         +G GLGLPIA++++  HGG   I S+  EG EV+
Sbjct: 210 VGMSPDEIDVAMAPFGQVDGGRSRWREGAGLGLPIAKALVELHGGALYIASQQNEGTEVV 269

Query: 470 AILP 473
              P
Sbjct: 270 ITFP 273


>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 948

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 7/266 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +  ++  D   ++QVI NLLSNA+KFT I G + + V   +G    I ++D 
Sbjct: 567 LYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVCR-AGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEPGMGSQF 684

Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494
              +P               +  +C+
Sbjct: 685 TIRIPLYSAQYPAKTTVDGLSDKRCW 710


>gi|191639754|ref|YP_001988920.1| Sensor protein [Lactobacillus casei BL23]
 gi|190714056|emb|CAQ68062.1| Sensor protein [Lactobacillus casei BL23]
          Length = 636

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 107/255 (41%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +    ++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +        + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKVRSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|110679868|ref|YP_682875.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455984|gb|ABG32189.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 347

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+ +  +  F+A++SHELRTPL A++GF E +        +      ++  +      +
Sbjct: 106 LEQADQMRRDFVANVSHELRTPLTALMGFIETLR--GPAREDAAARDRFLDIMEGEAGRM 163

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LSR+E  +    +  ++L D+V+     L   A + ++ +   +      +
Sbjct: 164 NRLVGDLLSLSRVEGNQRVRPQDRVNLSDVVQSVARTLAPLANDTSVVLECDLPQQPVIL 223

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEG 415
             D   + QVI NL+ NAVK+   GGRV + +   +        G  IS+ D GPGI   
Sbjct: 224 IGDADQLMQVITNLVENAVKYGGSGGRVAIKLTEVARDTSLRAPGVLISVTDFGPGIDPV 283

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +P +   F +       A  G GLGL I + I+  H G+  I S+L +G     +LP 
Sbjct: 284 HLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIDSELGQGSTFTVVLPL 342


>gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
 gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
          Length = 880

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 10/270 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + N ++       + ++             ++ A   N AKS FLA+MSHE+RTPLN I
Sbjct: 347 IQGNDELAEFTETLNRVMERNYHHNKELIIAKEDAISANKAKSVFLANMSHEIRTPLNGI 406

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G +E++    +    +   +E + DI  S   LL L+N+ILDLS+IE+G   LS     
Sbjct: 407 IGMAEILSQSQL----SANQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 462

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           L + V + + ++  +A  K+IE+   ID    + ++ DE  +RQV+ NLLSNA+KFT+  
Sbjct: 463 LREAVYDSVSVILSKAISKDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSK- 521

Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G +   + +T           S+ D G GI   ++ ++   F Q   +I     G GLGL
Sbjct: 522 GTITTDIAYTPMSLGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 581

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I + ++   GG    RS    G      L
Sbjct: 582 AICRQLVDLMGGYITARSVKGGGSTFTFCL 611


>gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 595

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 159/376 (42%), Gaps = 23/376 (6%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
             L           T+Y  +   I L       +  P   F         +    ++ + 
Sbjct: 86  FALAGMLEAYERTSTLYSFSCCGICLERQTPLLYSYPERYFTYLQQFKPTIVEILVVPLL 145

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           + +  L  +   +            + +++++   A           A+  ++E+ +R +
Sbjct: 146 IANQPLGTIWIVSHDE----HRQFDREDLRLMKSLANFTASALYNSNARQAAEESARREQ 201

Query: 244 EEN--------------LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                              K  FLA +SHELR+PLN ILG++++++   +   +      
Sbjct: 202 AARAVSEAAQNAAEQANRLKDEFLAVLSHELRSPLNPILGWAKLLQTRKL---DEAKTAY 258

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I R+ +    L+ ++LD+SRI   +  L  S++ L  ++   +  ++L AQ K+IE
Sbjct: 259 ALATIERNAKLQSQLMEDLLDVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIE 318

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  + +P++  V  D   ++QV+ NLLSNAVKFT  GG+V + +     + Q I + D G
Sbjct: 319 LKTEFEPNIGQVLGDPSRLQQVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQ-IQVSDTG 377

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            GI    +P V   F Q          G+GLGL IA+ I+  HGG     S+   +G   
Sbjct: 378 KGINPEFLPHVFDYFRQADNTTTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATF 437

Query: 469 IAILPNTRVLNFIPED 484
             +LP   V     ED
Sbjct: 438 TVLLPIKSVEPQTSED 453


>gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
 gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
          Length = 565

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++  AL     +    ++     L    +        ++A + + E+RKRAEE   A   
Sbjct: 148 VIVGALIVQVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRD 207

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A ++HELRTPLN +LG +E+I    +      + +E + ++ +SG+ L  +IN++LD 
Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSN----SQREIVNNLSQSGEFLRTIINDLLDY 263

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+I AG  EL     +L D+      +   RA EK I+    +   +    + D + + Q
Sbjct: 264 SKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQ 323

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           + +NL+ NA+KFT   G V V + W + +    S++D+G GIA+  I T+   F Q   +
Sbjct: 324 LFVNLIGNAIKFTDQ-GHVSVEIKWLNDQFI-FSVEDSGVGIAQSAIKTLFEPFTQADNS 381

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                +G GLGL I + + A   G   + S +  G      LP  +V++ + E + 
Sbjct: 382 SSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPL-QVVDTLAERDS 436


>gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 111/472 (23%), Positives = 179/472 (37%), Gaps = 37/472 (7%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFP-------MWSLITLAVYAANLSLGKKVMNSDI 98
              +     ++LL      W   +P           W  + +      + + ++      
Sbjct: 20  LIYAAFASAWILLSDKAVEWLFSSPHSITLAATLKGWVFVAVTSVVLYVLVRRQTERERQ 79

Query: 99  KIGEVY------VWRIWLLVGQIAIGLC--WTLLTLVEPGTWTPEYLTIYKS-------- 142
              E             LL G  AIG    W+   L   G+WT E   I+          
Sbjct: 80  TRAERRKAEEALRAERELLAGMSAIGHIGGWSFDPLTHEGSWTEEVARIFDLDPSHPFDM 139

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           AT L      +        A   +                 +  +S  G+          
Sbjct: 140 ATGLSCFEGESRQRIDAAIAAACTLGTRYDIELVLKSPKGRIKSVSTVGIPEMQNGRVVR 199

Query: 203 ITYHLFKSNVK---ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +L   + +          +D L   +       DE R RAE  N AKS FLA+MSHE
Sbjct: 200 VRGYLQDLSEQKRLTQELADYRDHLEDLVRKRTVQLDEARARAEAANRAKSSFLANMSHE 259

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLNAILG + ++   T+    +    + I  I  +  HLL LI+++LDLS++EAGR 
Sbjct: 260 IRTPLNAILGLARLLRRSTL----DAQQADRIAKIDDAAHHLLGLISDVLDLSKVEAGRQ 315

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L      L  ++ +    +  +A  K + +  +  P+   +  D   +RQ +LN ++NA
Sbjct: 316 ALDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLRQALLNYMANA 375

Query: 380 VKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           VKFT   G V   V   +   +    +  ++D+G GIA   +P +   F QG  +     
Sbjct: 376 VKFTPT-GWVRFDVQCEAAGERAVRLHFDVRDSGIGIAPEHLPRLFNDFEQGDKSTTRRF 434

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPEDN 485
            G GLGL + +S++   GG   + S   +G        LP     +  P   
Sbjct: 435 GGTGLGLAVTRSLVELMGGSVGVDSAPGQGSRFWLHVTLPRGVAPSPAPSPT 486


>gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 586

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217
             +  +    ++  L T  I++  +L     G+++      FF  I   L KS +++   
Sbjct: 1   MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L  +     +         E+ N  KS  +A++SHELRTPLN I+G S ++   
Sbjct: 61  VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     +  +EY+  I+ S   L ++ ++I+DL +I++ R EL    I    ++ +   
Sbjct: 114 EL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              L A++  I+        L + ++ D   + Q++ NL+SNAVKFT  GG ++++V   
Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S+KD G GI + E   V   F Q   + +   QG G+GL I++ I    GG  
Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            + S++ +G      +         P +  +S +   +A
Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322


>gi|229172039|ref|ZP_04299604.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3]
 gi|228611382|gb|EEK68639.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3]
          Length = 466

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIHISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIVITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIETEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGHGTTVSIKL 457


>gi|167761523|ref|ZP_02433650.1| hypothetical protein CLOSCI_03934 [Clostridium scindens ATCC 35704]
 gi|167661189|gb|EDS05319.1| hypothetical protein CLOSCI_03934 [Clostridium scindens ATCC 35704]
          Length = 436

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 7/310 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V      V  A  T   +   +  I++  +L   +     +   +   N   L    E D
Sbjct: 134 VLRVSKTVDTAFFTAIRILPAMGVIAVMMLLIAWILARWQVARLIRPINELDLDNPMEND 193

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                  +  S+  + +++    N+ K  F A++SHEL+TPL +I G++E+++   + P 
Sbjct: 194 VYEELTPLLMSIDRQNKEKDAIANMRK-EFSANVSHELKTPLTSISGYAEIMKDGLVKP- 251

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  K++   I+     L+ L+ +I+ LSR++ G+ EL +  + L  + RE    L  +
Sbjct: 252 --EDMKKFSERIYNEASRLITLVEDIIKLSRLDEGKVELEKEEVDLYQLAREVCSRLAPQ 309

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  ++I I    +          + + +++ N+  NA+K+   GG + V VG T    + 
Sbjct: 310 ANARDIRIEVTGES--VVYRGIRQILDEMVYNICENAIKYNKDGGTLSVWVGSTLKGKKI 367

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI   +   +   F +   +      G GLGL I +     H     + S++
Sbjct: 368 I-VTDTGIGIPADQQERIFERFYRVDKSHSKESGGTGLGLSIVKHGAMIHDADIRVESEV 426

Query: 463 REGVEVIAIL 472
            +G  +    
Sbjct: 427 GKGTRMELTF 436


>gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 976

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 9/354 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++        +  + +   LL  L   +     L Y             +   +M   + 
Sbjct: 558 VLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAFLK 617

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEE 244
                 + A  L+++  +T    +   +    Q       I   E       + ++ +E 
Sbjct: 618 AFLTVCVFAGVLAWWVVLTRESRRVAQEESERQTSLLIQEIDAHEKTDQALQKAKEASEA 677

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR++  +SHELRTPLN+ILGF+++++ +T  P     +++ +  I RS  HLL+L
Sbjct: 678 ANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLLSL 734

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           IN +LD+++IEAG+ +L  + I   + + +   M    AQEKN+    +++  +   V  
Sbjct: 735 INGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFASTAQEKNLGFRLELEGRMPMVVRG 794

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQ+++NLL NAV FT   G V + V +         I D G GIA  +I  +   
Sbjct: 795 DEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDTGIGIAPEQIERIFQP 852

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           F +G         GVGLGL I + + A  GG   + S   EG      L  + V
Sbjct: 853 FERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 904


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 9/280 (3%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFL 253
           L     +     + + +     A+    IA         +E R+RAE   E + AK+ F 
Sbjct: 300 LGVLVAVASPRRRLDDRYRDFFAQITGQIATAIANARSYEEERRRAEQLAELDRAKTVFF 359

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           +++SHE RTPL  +LG  E    E +    +   ++ +  IHR+   L  L+N +LD SR
Sbjct: 360 SNVSHEFRTPLTLMLGPVE----EALQATQDAQQRDRLELIHRNALRLQKLVNTLLDFSR 415

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAGR E       L  +  +   + +       + +     P     + D +   +++L
Sbjct: 416 IEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLPEPTYVDREMWEKIVL 475

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA K+T   G + V +   + +   + ++D G GI   E+P +   F +   A   
Sbjct: 476 NLLSNAFKYTFE-GEIAVILRSRNEQ-IELEVRDTGIGIPAEELPQIFERFHRVQGARGR 533

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +G G+GL + Q ++  H G     S + +G   I  +P
Sbjct: 534 TYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIP 573



 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 8/246 (3%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            N  K  FLA +SHELR+PLN ILG+S +++ + + P       + +  I R+ +    LI
Sbjct: 919  NRVKDEFLAIVSHELRSPLNPILGWSTLLQTQKLNP---AKTAQALNAIARNARLQAELI 975

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             ++LDLSRI  G+  L+     L   ++  +  ++L A+ K+I+I    +P +  V  D 
Sbjct: 976  EDLLDLSRILRGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDS 1035

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              ++QV+ NLLSNA+KFT  GG V + +     + Q I + D G GI    +P +   F 
Sbjct: 1036 SRLQQVMWNLLSNAIKFTPEGGLVDIQLERCGAQAQII-VSDTGKGIDPDFLPYIFEYFR 1094

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPED 484
            Q + A      G+GLGL I   ++  HGG     S    +G      LP    +   PE 
Sbjct: 1095 QENSATTRKFGGLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPL---MQSSPEI 1151

Query: 485  NHESTQ 490
            N +S Q
Sbjct: 1152 NEDSKQ 1157


>gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Bacteroides
           xylanisolvens XB1A]
          Length = 754

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 566 AEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIA 625

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
             ++E  +++D +   +  D + + QV+ N L+NA KFT   G + +   +        I
Sbjct: 626 -PHLEFLKEVDDTPLEINVDRERLIQVLTNFLNNAGKFTET-GYIKLGYSYLPDEGNVQI 683

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 684 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGKIELKSEVG 739

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 740 KGSRFTVILPCRVV 753


>gi|295106470|emb|CBL04013.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 552

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 144/351 (41%), Gaps = 18/351 (5%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
           Y          +  +++    F     + L+F  +       ++   H          + 
Sbjct: 211 YFLFITLLIGAVVYAVTTFFVFRPLNRMKLAFTEMGEGKLAVSLDDAHAAREV-----SR 265

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-------LA 248
            +  F  +   L  +    L  Q E      EL  A    ++ R   E  N         
Sbjct: 266 LIERFNSMAAELHATYDH-LEDQVESR--TDELRRANVALEQQRDALERLNEKLAEETQF 322

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS  L+ ++HELRTPL +I+ F+++       P + E+ +    +I ++ Q LL +IN++
Sbjct: 323 KSDLLSMVNHELRTPLTSIITFAQI--SREACPPDRESERHSWEEIEKNSQILLTMINDM 380

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD++R +AG   ++   + L DIV      +   A++  +    ++   +  V  D +  
Sbjct: 381 LDIARSDAGSVHVACEPMDLGDIVSSVRGTMTPLARKYCVAFRTRVASDVPLVNGDFEKT 440

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++++ NL SNA+KFT  GG V + V   +G G   + + D+G GIA  +   +   F Q 
Sbjct: 441 QRMLENLASNAIKFTPDGGTVELRVDLDAGNGSVRLCMADDGIGIAPEDHERIFERFFQV 500

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
                    G GLGL + +   A  G    + S L  G      +P   ++
Sbjct: 501 DSTSTRKYNGSGLGLALVREYAAVQGFAVSVESALGRGSTFTITIPPDAIV 551


>gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 613

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|108810018|ref|YP_653934.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|108813573|ref|YP_649340.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|145600962|ref|YP_001165038.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|150260697|ref|ZP_01917425.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165936543|ref|ZP_02225111.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010515|ref|ZP_02231413.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213929|ref|ZP_02239964.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167426128|ref|ZP_02317881.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469426|ref|ZP_02334130.1| two-component sensor/regulator [Yersinia pestis FV-1]
 gi|218927461|ref|YP_002345336.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|229836507|ref|ZP_04456673.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|229840116|ref|ZP_04460275.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842197|ref|ZP_04462352.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904062|ref|ZP_04519175.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|270488949|ref|ZP_06206023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294502331|ref|YP_003566393.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|108777221|gb|ABG19740.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|108781931|gb|ABG15989.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|115346072|emb|CAL18940.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|145212658|gb|ABP42065.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|149290105|gb|EDM40182.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165915659|gb|EDR34268.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990605|gb|EDR42906.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204904|gb|EDR49384.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167054839|gb|EDR64641.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679832|gb|EEO75935.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|229690507|gb|EEO82561.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696482|gb|EEO86529.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706191|gb|EEO92199.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|262360411|gb|ACY57132.1| two-component sensor/regulator [Yersinia pestis D106004]
 gi|262364361|gb|ACY60918.1| two-component sensor/regulator [Yersinia pestis D182038]
 gi|270337453|gb|EFA48230.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294352790|gb|ADE63131.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|320013880|gb|ADV97451.1| two-component sensor/regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 939

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L             +  L++ +     +    P+   ++
Sbjct: 271 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 330

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +++      
Sbjct: 331 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 384

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E ++ AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 385 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 440

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 441 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 500

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            ++   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 501 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 558

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 559 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 614

Query: 475 TRVLNFIP 482
             +   +P
Sbjct: 615 NAITPPMP 622


>gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             L +++F+A++SHEL+TPL +I GF+E +        +NET ++++  I +  + L  L
Sbjct: 341 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 396

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL LS IE+              I+ + I M++  A  K I +    D +   +  D
Sbjct: 397 INDILVLSSIESN-ISTQNDEFLPKSIIEDVINMVRKLANNKAINLEF-YDDNQELILGD 454

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +    Q+ LNL+ NA+K++  G  V V + ++     Y+ I DNG GI + ++P +   F
Sbjct: 455 KDKFYQLTLNLVENAIKYSENGSNVKV-ISYSKQGNYYLEISDNGLGIPKEDLPRIFERF 513

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   +    + G GLGL I + I+    G   ++S L EG      +
Sbjct: 514 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFKVRI 559


>gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 686

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 10/285 (3%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G    +    + I  ++F   + ++  Q          +   +  ++  + A+  N AK+
Sbjct: 254 GWTPVSQWILSIIASYIFSLLIAMVFYQISSKKHRE--KQYAAELEKAAELAKSANEAKT 311

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RFL +MSH++RTP+NAI+GFS ++E       N E  KEY+G I  SG  L+ +IN+IL+
Sbjct: 312 RFLFNMSHDIRTPMNAIIGFSGLLEKNL---QNEEKAKEYLGKICSSGNLLMTIINQILE 368

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           ++RIE+G   L   A  +  +      + +   ++KN++    +D   + +  D   +++
Sbjct: 369 IARIESGTTALQLKAEDINTLFHTVNTVFEEDVRKKNLQYSVDLDVYHTFILCDRVKLQE 428

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFG 425
           ++LN++SNA+K+T+ G  VHV +               + +D G G++E  +P +   F 
Sbjct: 429 IMLNIISNAIKYTSDGHGVHVKIYEKDSEDPRKARLIFTCEDTGIGMSEEYLPHIFEEFS 488

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           +     ++   G GLGLPI +S++   GG   + S    G +   
Sbjct: 489 REHTTTENKVAGTGLGLPIVKSMIELMGGSIRVESTQGAGTKFTV 533


>gi|186681707|ref|YP_001864903.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186464159|gb|ACC79960.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 709

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 162/356 (45%), Gaps = 16/356 (4%)

Query: 146 LIALSISAL--SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            I L+++++  + F L     +     V  +    + S+++       +           
Sbjct: 274 WIVLAVTSVDNALFGLEEIKLILIVLTVGLIGASLLASLYLAPYLARPVEELRDYALNIH 333

Query: 204 TYHLFKSNVKILSCQAEKD---DLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMS 257
           ++H  +        +        L   +E  K+ ++E     K A+  N  KS+FLA+ S
Sbjct: 334 SHHAAQPVPHNFQIREFNQLAQALDQMVERLKAGAEELEIAWKEAKNANQIKSQFLATTS 393

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELR PL+ I+    V+E         E   E++   + +  HLLN+IN++LD+S+IEAG
Sbjct: 394 HELRNPLHTIINCIRVVEDGLCDSREEEM--EFLKRANETTIHLLNIINDLLDISKIEAG 451

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +  + + L  I+ E I +  +  Q+K +++  ++DP    + AD   ++QV++N++ 
Sbjct: 452 KLSVVITPLDLRQILLEVINLQSVNVQQKGLQLKCELDPQPIPIKADAAKLKQVLINVIG 511

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA KFT   G + +     S  G     + + D G GI   +   +   F   +      
Sbjct: 512 NATKFTDT-GSITIATEIQSSNGKSQVVVIVTDTGIGIDPNQQHKLFRPFVMVNGTTTRQ 570

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
            +G GLGL I+++++   GG   + S  L +G  +   LP   V + +P DN +  
Sbjct: 571 FEGTGLGLAISRNLIELMGGSITLESTGLHQGTTLKITLPLIDV-SLLPVDNKKEN 625


>gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 522

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 9/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    +     + + AEE + AKS FLASMSHELRTPL  +LG +E+     +    +
Sbjct: 125 VTERVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTEL----ALMSEPS 180

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y+  + RSGQ L +L+N++LDLSRIEA + EL      L   +   +  L L A+
Sbjct: 181 AAVRTYLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLILDAR 240

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400
              + +   + P++   V  D   +RQVI NL+SNA+KFT  GG + V V      +   
Sbjct: 241 ANGLCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGG-ITVAVESDTTGAPDL 299

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA  ++  V  +F Q          G+GLGL I + ++   GG+    S
Sbjct: 300 LRFRVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRLWAES 359

Query: 461 KLREGVEVIAI 471
           +  +G      
Sbjct: 360 EPGKGSCFQFT 370


>gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 566

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L F   +     +   K +   ++    +    ++     E RKRAE    A   F
Sbjct: 149 ILGELIFSVALDQVDQEFTSKQMVLVSDLVHGVISRHLSLEREVELRKRAEASEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +G    +  ++Y+G++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSAELLSKTELG----DEQQQYLGNLIQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  D+      +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRIHFSIDKKLGIPEFLVGDFERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI       +   F Q   + 
Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-DGYAHFEVEDTGIGIPFEAQKALFDPFVQADRST 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G     +LP  +
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMDGEISFVSEPRKGTTFKVVLPLKQ 427


>gi|24374087|ref|NP_718130.1| sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
 gi|24348570|gb|AAN55574.1|AE015696_4 sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
          Length = 1019

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 148/307 (48%), Gaps = 18/307 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAE----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           F  +   +  ++  I+S   E     + L   +E      ++ R +A +    K+RFLA+
Sbjct: 506 FVNMQRRVAGAHHAIISTMNEVKLLNEALEERVEKRTKELEQERDKANQLAAVKARFLAN 565

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+  I GF+E I      P         +  I ++  HL N+IN+ILD ++I+
Sbjct: 566 MSHEIRTPITIIKGFTEQIL-----PNTQGEVHNALCKIEQNTLHLQNVINDILDAAKID 620

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            G+  ++E  +++I ++      ++  A+ KN+     ID   +  +  D   ++Q++LN
Sbjct: 621 EGKMTIAEQTVAIIPLLNSLSDSMKFLARTKNLTTELNIDIADIEHIITDPFRLKQILLN 680

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            +SNAVKFT   G V +    T+     I++ D G GI++ +  T+  +F Q   +    
Sbjct: 681 FISNAVKFTPK-GTVKLVANITNADELCIAVIDKGIGISDQQASTLFEAFTQADSSTSRD 739

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE-------DNHE 487
             G GLGL I++ +      +  ++S+L  G      LP ++++  + E         H 
Sbjct: 740 FGGTGLGLFISKQLADAMFIKLHMQSELGVGSCFSVTLPESKIIKNLTEFSKNEKKIEHT 799

Query: 488 STQYKCY 494
           +  +K Y
Sbjct: 800 TPDWKNY 806


>gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
 gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
          Length = 449

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  EI +    +   V  D   M
Sbjct: 269 SRIDNATSNLDVELINFTAFITFILNRFDKIRAQDEEKKYEIVRDYPINSVWVEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSISDQGLGIPKEDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP     V   I ED+ 
Sbjct: 388 KARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSEYGKGSTFTIVLPYDKEAVKEEIWEDDV 447

Query: 487 ES 488
           E 
Sbjct: 448 ED 449


>gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 855

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 24/255 (9%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+N ILG ++V+    +    +     Y+ DI  S   LL LIN+ILD
Sbjct: 452 EFLANMSHEIRTPMNGILGMAQVLGQTDL----DAAQASYLRDIEDSAASLLKLINDILD 507

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369
            S+IEA R EL++   SL  ++      L + A+EK + +  ++ P    +   D   +R
Sbjct: 508 FSKIEADRLELAQEPFSLRGLLSLIEASLGVLAREKGLGLSVEVAPETPDILIGDADRLR 567

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------GQYISIKDNGPGIA 413
           QV++NL+ NA+KFT  GG + ++                           S+ D G GI 
Sbjct: 568 QVLVNLVGNAIKFTTRGG-IVISARPAEPDPDVTLPGEAETTEATREILFSVSDTGIGIR 626

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   +  +F Q   +      G GLGL I++ +    GG   + S+  +G        
Sbjct: 627 PEDAGRIFEAFTQADGSYTRRFGGTGLGLAISRRLARLMGGDISLDSEPGQGSTFTLS-- 684

Query: 474 NTRVLNFIPEDNHES 488
               L+  P++  ++
Sbjct: 685 ARFGLDNTPDETADA 699


>gi|258540992|ref|YP_003175491.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|257152668|emb|CAR91640.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 636

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +   +++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +  T      +S
Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQTHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1150

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 173/420 (41%), Gaps = 27/420 (6%)

Query: 90   GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
            G ++      +G+    R  + V  +  G                  L +     LL  +
Sbjct: 590  GSRIPLGRSLVGQAARSRRTIEVDDLPPGYATVFSGTGRTDPSHLVVLPVVLEDQLLGVV 649

Query: 150  SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYI 203
             ++A+    + +  FL  F   V ++  ++++    D  L         L+         
Sbjct: 650  ELAAVQPLTVVHRDFLDQFIESVGVNVSSLIANTRTDELLDRSQRLTAELSNRSRELQAR 709

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASM 256
               L +SN ++    A   D   ++E      ++ R+  E         ++ KS FLA+M
Sbjct: 710  QEELQRSNAELKEKAALLADRNRDIERKNLEIEQARQELEARAQQLSRTSMYKSEFLANM 769

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  ++++     G L  E   +Y   IH +G  LL LIN+ILDLS++EA
Sbjct: 770  SHELRTPLNSLLILAQLLAQNLEGNLT-EKQVDYAEVIHSAGSDLLQLINDILDLSKVEA 828

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            G+  +  +A  L  ++       +  A E+ +      +P     +  DE  +RQV+ NL
Sbjct: 829  GKMPVHPAAFPLSGLMEHVEATFRPVATERELAFEAVTEPDAPQWLTTDESRLRQVLRNL 888

Query: 376  LSNAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            LSNA+KFT   GRV + V              SG      + D G GI    + ++  +F
Sbjct: 889  LSNALKFTDQ-GRVELRVAVAGEEEVPSSLRDSGPVVAFRVVDTGIGIPADRLESMFGAF 947

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             QG         G GLGL I++ +    GG    +S L  G      LP  R  +   E 
Sbjct: 948  QQGDGTTSRHYGGTGLGLSISREVARLLGGTIEAQSTLGRGSCFTLYLPVHRRGSTQAEP 1007


>gi|150019629|ref|YP_001311883.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149906094|gb|ABR36927.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 490

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 9/271 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L     + L    E+ +     E  ++L   +++ AE  N AKS FLA+MSHE+RTPLN
Sbjct: 112 RLGMVVKRELKDLHERVERKRVEEEMRNLLISSKEEAEAANKAKSNFLANMSHEIRTPLN 171

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++G  E+     M     +  +E +     S   L+N++N IL+ S+ EAG+ EL ES 
Sbjct: 172 GVIGMIEL---TLMNSELKDELRENLLIAKDSAYSLINIVNAILNFSKSEAGKMELRESN 228

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTA 384
            +L +++   + +     ++K I +       +  + + D + ++Q++ NL+SNA+KFT 
Sbjct: 229 FNLKNLIHNTLKIYSYDVRKKGITLEYNDSDEIPDLLYGDSEKLQQILNNLISNAIKFT- 287

Query: 385 IGGRVH--VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            GGR+   +      G    +   +KD G GI E +   +  SF Q + +      G GL
Sbjct: 288 DGGRISLIIKAEQIIGEKIILRFLVKDTGIGINEEDKNLLFKSFSQLNNSYSREYNGTGL 347

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL +++ ++   GG   + S +  G      
Sbjct: 348 GLALSKQLVEILGGGICVESHMGLGSTFSFT 378


>gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 738

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 26/286 (9%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L++  E       +    A++    K  FL+ MSHE+RTPL+ I+G +++       
Sbjct: 204 NLKLLSIQEQ---ELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMTKIAATHLDD 260

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  ++ +  I  S +HL+ +IN++LD+S+IE G+  ++     L  ++   +  + 
Sbjct: 261 SN---RIEDCLSKITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIY 317

Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-- 397
            +A+E+ ++    I     +V+  D   + Q++LNLLSN++KFT  GG VH+ V      
Sbjct: 318 AQAEEQGLKFECGIKNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVV 377

Query: 398 GRGQYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
               ++    KD G G+++  +  +   F Q          G GLG+ I  +++   GG 
Sbjct: 378 DGKTHLQFITKDTGIGMSDEYLKRIFKPFEQADSGTSRKYGGTGLGMAITYNLVKLLGGS 437

Query: 456 FLIRSKLREGVEVIAILPNT---------------RVLNFIPEDNH 486
             + SKL EG     +LP                 +VL   P++++
Sbjct: 438 IQVESKLGEGTTCTVVLPVDVPNEGKHKKWEWEPLKVLVADPDEDN 483


>gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 291

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  ++   + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE R
Sbjct: 11  DATAELERLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFR 70

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +
Sbjct: 71  TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 129

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S     L+D+      M +         +     P L  ++ D+K + Q++ N +SNA+K
Sbjct: 130 SPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDPPVLPMLYTDDKKLAQILRNFISNALK 189

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V V             ++D G GIA      +   F Q    ++    G GLG
Sbjct: 190 FTPQ-GHVRVFAQLEGDTHVRFGVQDTGIGIAAELHEALFEDFVQVDSPLQKRLTGTGLG 248

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           L I +      GG+  + S   +G E   +LP T V  
Sbjct: 249 LSICKRFAELLGGRVGVNSVPGQGSEFYVVLPVTLVAE 286


>gi|228920112|ref|ZP_04083461.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839568|gb|EEM84860.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 463

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A+    I     + I+    +   LS    +  HL   +       
Sbjct: 154 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 209

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 266 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 322

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 323 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIYD 381

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + I+D G GI    +  +   F +   A      G GLGL I + I+  HGGQ+ I
Sbjct: 382 -YCELKIQDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWQI 440

Query: 459 RSKLREGVEVIAIL 472
            S+  +G  V   L
Sbjct: 441 ESEKDKGTTVSIKL 454


>gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1131

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             P     +      SA L + +  + +           +S    + A     I+  +  
Sbjct: 624 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 683

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  FLA++SHELRTPLNAILG+S +++ E   P +       +  I RS +    +I
Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT +GG V V +         + ++D G GIA   +P V   F
Sbjct: 861 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q          G+GLGL I++ ++  HGG     S    +G     +LP
Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969


>gi|229060824|ref|ZP_04198179.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
 gi|228718471|gb|EEL70103.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
          Length = 448

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATKKIASGEYDIELDENRKDEIGTLA 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E  K
Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L      L   +++ I ML+ + +EK+I
Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFHLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG V   V         ISI DN
Sbjct: 326 AVEFDVPN--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEELES-SIVISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|229195596|ref|ZP_04322362.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293]
 gi|228587845|gb|EEK45897.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293]
          Length = 466

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L Y + L   P+ +A++   I     + I+    +   LS    +  HL   +       
Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           + +D++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I    
Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +  
Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +++  EK I I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+     
Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++IKD G GI    +  +   F +   A      G GLGL I + I+  H GQ+ I
Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHEGQWRI 443

Query: 459 RSKLREGVEVIAIL 472
            S+   G  V   L
Sbjct: 444 ESEKGNGTTVSIKL 457


>gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 946

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S   +     E+  + A+L+++       R +AE  +  K  FLA++SHELRTPL
Sbjct: 518 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 577

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+S +++ +      +      +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 578 NAILGWSRLMQSDVA---ESANLGRGLVIIERSARAQKQIIDDLLDMSAIMSGKIRLQAE 634

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +  +VR  + ++Q  A  + I +            + D   ++QV+ NLLSNA+KFT
Sbjct: 635 HFDIAGLVRSTLELMQPTALARGIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 694

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +         + ++D G GIA   +P V   F Q          G+GLGL 
Sbjct: 695 PTGGTVRVAMDI-EDERLRLCVQDTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLS 753

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
           I++ ++  HGG     S    +G     +LP  
Sbjct: 754 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFR 786


>gi|219848945|ref|YP_002463378.1| AraC family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543204|gb|ACL24942.1| two component transcriptional regulator, AraC family [Chloroflexus
           aggregans DSM 9485]
          Length = 1201

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 160/401 (39%), Gaps = 15/401 (3%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
                A      +           V      LL           +  ++           
Sbjct: 431 VTTSAAMRWQYWQYFNRQQQTNNRVGRLTARLLHTLAES----DIYEILAHHLPELNIPL 486

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           ++                +    AV     PVV   S        +       +    L 
Sbjct: 487 LWIG---FFEAENGDPVAWCRLRAVTAPQQPVVRIRSRTFPPRQWLPTRQSFQLALIPLG 543

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKSRFLASM 256
                   +     ++         + A L  A+    + E ++ AEE N  KSRFL+ +
Sbjct: 544 GTGSEAGFVTFDASRLELYGTITQQINAALNTARLYRAASEGQRLAEEANQLKSRFLSMV 603

Query: 257 SHELRTPLNAILGFSEVIELETM--GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           SHEL+TPLN I+G S ++  E    G     + ++ +  I+ S +HL  LI+++LDL+  
Sbjct: 604 SHELQTPLNLIVGMSGLLLREIAQSGDPLPSSIRDDLRRIYASARHLGRLISDVLDLASS 663

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           +AG+  L+   + L +++R      +  A +K +  +  I      VW D   ++Q+ LN
Sbjct: 664 DAGQLRLNCEVVDLGEVMRVVADAGRQMAADKQLTWYDSIPAEGPWVWGDRTRLQQIGLN 723

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+KFTA  GRV + V   +     ++++D G G+   E   +   F +   ++   
Sbjct: 724 LVVNAIKFTAR-GRVGLIVTPETD-AVTVTVRDTGIGLPPTEQAHIFEEFQRSERSVSQG 781

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAILP 473
             G+GLGL I + ++A HGG+  +RS+    EG E    LP
Sbjct: 782 YGGIGLGLAICKRLVAMHGGEIGVRSRGIEGEGAEFFFRLP 822


>gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 755

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               E+      L+ AK  ++ ++  AEE +  KS  LA+MSHE+RTPL  I+GF+E I 
Sbjct: 479 RDITERKRKARRLKQAKEQAELSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIG 538

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E  G   +     +   I  SG+ LL+ ++ +L+LS++EAG+  L    I L    R+ 
Sbjct: 539 DEIDG---DGGVAHFADLIEDSGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLAGQARQV 595

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A +  + +  + + + +  WADE G++ V+ NLLSNA+K+T   G V V    
Sbjct: 596 AREFAAEADDSGLALEVEAEEAGA--WADEGGLQIVLQNLLSNAIKYTEE-GTVQVRTYR 652

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + I+D G G+      ++   F QGS  +    +G G+GL + +      GG 
Sbjct: 653 -EDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGS 711

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + ++  +G    A LP  
Sbjct: 712 IDVETEKGQGSTFTARLPAA 731


>gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
          Length = 1021

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 134/351 (38%), Gaps = 11/351 (3%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
               P        A       ++       P  V        VA  T          + L
Sbjct: 234 DASHPAVKPTLALAGGDKPWPVAETFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVL 293

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEE- 245
               +        +   L    +   + Q     +  ++  A + +D   E R+RAE   
Sbjct: 294 PIPASGDTGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRAEALA 353

Query: 246 --NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + AK+ F +++SHE RTPL  +L   E            +  +  +G  HR+G  LL 
Sbjct: 354 EIDRAKTAFFSNVSHEFRTPLTLMLSPLE---EALGRDGIADEQRTLLGIAHRNGLRLLK 410

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N +LD +RIEAGR     + + L     E     +       +    +  P    V+ 
Sbjct: 411 LVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAVLRFVIEAPPLPQPVYV 470

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422
           D     +++LNLLSNA KFT   G + V VG         I + D G GI E EIP +  
Sbjct: 471 DRDMWEKIVLNLLSNAFKFTFE-GEIVVRVGPDPDGRHAVIEVSDTGTGIPEAEIPHLFE 529

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   + +G G+GL + Q ++  H G   + S++  G      LP
Sbjct: 530 RFRRVEGARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVTLP 580


>gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 920

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 16/310 (5%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +   ++ I+ A +    L+F  + +    K N +    QA    L+A            
Sbjct: 393 YLRYWLIAIAFASLAMLGLAFALFRSNRARKRNAE--ELQAANQALLAIHTQ----LANE 446

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE +N AKSRFLA++SHE+RTP+N +LG+S++++       ++   +  +  I+RSG
Sbjct: 447 KQEAERKNEAKSRFLANVSHEIRTPMNVVLGYSDLLQQTPGLGSDS---RRALQVINRSG 503

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS- 357
           +HLL LIN+ILD+SRIEAG  +L E    L  ++ +  +M   R Q +N ++  K +P  
Sbjct: 504 EHLLTLINDILDVSRIEAGTIQLVEQDFCLQTLLMDLEVMFSERCQHQNTQLSIKAEPDT 563

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIA 413
              +  D   + Q+++NL+ NAVKFT   G++ +TV               +KD G GIA
Sbjct: 564 HPDLRGDRGKLLQILINLVGNAVKFTEQ-GQILLTVNTQPMGADQFELNIIVKDTGCGIA 622

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   V + + Q   + +   +G GLGL I++      GG  +  S++ +G      +P
Sbjct: 623 PEDYDKVFSLYQQTE-SGQRLGKGTGLGLAISREFARRMGGDLVFESEIEKGTTFYLRIP 681

Query: 474 NTRVLNFIPE 483
                    E
Sbjct: 682 FRAGQQVASE 691


>gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 291

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  ++   + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE R
Sbjct: 11  DATAELERLREQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFR 70

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +
Sbjct: 71  TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 129

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S     L+D+      M +         +     P L  ++ D+K + Q++ N +SNA+K
Sbjct: 130 SPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDPPVLPMLYTDDKKLAQILRNFISNALK 189

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V V             ++D G GIA      +   F Q    ++    G GLG
Sbjct: 190 FTPQ-GHVRVFAQLEGDTHVRFGVQDTGIGIAAELHEALFEDFVQVDSPLQKRLTGTGLG 248

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           L I +      GG+  + S   +G E   +LP T V  
Sbjct: 249 LSICKRFAELLGGRVGVNSVPGQGSEFYVVLPVTLVAE 286


>gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 490

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 5/285 (1%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           LAG+      F   I+    ++        A +D  I+E +  +    E        N A
Sbjct: 209 LAGLRRDGTEFPIEISLGPLRTEDGAFVMSAIRD--ISERKRFERALQEKNVELAAANEA 266

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+RFLA+MSHELRTPLNAI+GF+  + +   GPL  +  ++ +  +  SG+HLL LIN++
Sbjct: 267 KTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQERQ-LRTVQASGRHLLALINDL 325

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+++IEAG+ ++    + +  ++ E +  L  +A  K + +   +        +D + +
Sbjct: 326 LDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLSVPEPALQCESDRRML 385

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+++NL+ NA+KFT   G +HV +   +G    I + D G GI   +   +  +F +  
Sbjct: 386 NQIVINLIGNAIKFTDA-GSIHVGLRARAGGF-EIEVTDTGIGIGTDDQAKLFGAFSRVV 443

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +     +G GLGL ++Q + A  GG   +RS+   G      +P
Sbjct: 444 SSQGRVAEGTGLGLHLSQKLAALLGGTIDVRSEAGRGSCFSLRVP 488


>gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris]
 gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris]
          Length = 816

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  ILG  E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P         +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+       +   L     D   ++ V++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T+     + I+DNG GI      T+   F Q          G GLGL IA+  +  HGG 
Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L  +    G      LP  
Sbjct: 398 ILAGNARNGGAIFTIELPLK 417



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                 +F+   SH+L+ PL A+      I  E +G + +E  K+Y+  + +    +  L
Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +L  +  ++G        I    ++ + I  L          +  +++ +L  +   
Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPILNTC 700

Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           E  +R+V   LL N+++      G + +       R     + D+GPGI +     +   
Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F       K      G+GL IA+ I+   GG+  + S+  +G     + P  +
Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810


>gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1150

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             P     +      SA L + +  + +           +S    + A     I+  +  
Sbjct: 643 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 702

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 703 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 762

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  FLA++SHELRTPLNAILG+S +++ E   P +       +  I RS +    +I
Sbjct: 763 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 819

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 820 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 879

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT +GG V V +         + ++D G GIA   +P V   F
Sbjct: 880 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 938

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q          G+GLGL I++ ++  HGG     S    +G     +LP
Sbjct: 939 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 988


>gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 942

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S   +     E+  + A+L+++       R +AE  +  K  FLA++SHELRTPL
Sbjct: 514 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 573

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+S +++ +      +      +  I RS +    +I+++LD+S I +G+  L   
Sbjct: 574 NAILGWSRLMQSDVA---ESANLGRGLVIIERSARAQKQIIDDLLDMSAIMSGKIRLQAE 630

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +  +VR  + ++Q  A  + I +            + D   ++QV+ NLLSNA+KFT
Sbjct: 631 HFDIAGLVRSTLELMQPTALARGIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 690

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +         + ++D G GIA   +P V   F Q          G+GLGL 
Sbjct: 691 PTGGTVRVAMDI-EDERLRLCVQDTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLS 749

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
           I++ ++  HGG     S    +G     +LP  
Sbjct: 750 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFR 782


>gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1131

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             P     +      SA L + +  + +           +S    + A     I+  +  
Sbjct: 624 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 683

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            +    +        +     + +S   +     E+  + A+L+++       R +AE  
Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  FLA++SHELRTPLNAILG+S +++ E   P +       +  I RS +    +I
Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364
           +++LD+S I +G+  L      +  +VR  + ++Q  A  + I +            + D
Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV+ NLLSNA+KFT +GG V V +         + ++D G GIA   +P V   F
Sbjct: 861 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q          G+GLGL I++ ++  HGG     S    +G     +LP
Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 6/249 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  +++  +++    N     
Sbjct: 431 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLSRDAN----R 486

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++     +  +++   I        +K + 
Sbjct: 487 LVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKRLT 546

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+PS+   +  D   ++QV+ NLLSNA+KFT   G + + V           ++D 
Sbjct: 547 LYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDT-GCIVLQVQRRHDGYLAFQVRDT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    +  +   F Q    ++   QG GLGL I + +++   G   I S+   G   
Sbjct: 606 GVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESEPGLGSLF 665

Query: 469 IAILPNTRV 477
              +P  + 
Sbjct: 666 GVRIPLYQA 674


>gi|303245671|ref|ZP_07331954.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492934|gb|EFL52799.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 818

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 16/316 (5%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P  ++L    I       ++LA ++    S     T  L ++N  + +        I E
Sbjct: 210 APASLSL-LSDITPQRQAQLALAELIRDQESRIASRTASLREANRTLETANERLTREIEE 268

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            E         RK+A + + AKS FLA+MSHE+RTPLN ILG +++             +
Sbjct: 269 HERTARKLTAARKKASQASKAKSIFLANMSHEIRTPLNVILGMADLALR--PDSQGQVDH 326

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              +  I  +G  L  L+ ++LDLSRIEAGR +L     S   ++   +    + A  + 
Sbjct: 327 VRALEMIREAGASLRALLGDLLDLSRIEAGRLDLESIPFSPSRVLDAALSGHAVLAARQG 386

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------ 400
           + +   +   +   +  D   + QV+ NL+ NA+KFT   GR+ V V    G        
Sbjct: 387 LALEGHVASDVPETLVGDPGRLGQVLANLIGNALKFTPA-GRIDVFVRRGDGDKEGGCPE 445

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S++D G GI   +   +  SF Q   +I     G GLGL I + ++   GG+
Sbjct: 446 PEVVTLLFSVRDTGVGIDPEKRKAIFQSFRQADESITRQYGGTGLGLAICRRLVGLLGGR 505

Query: 456 FLIRSKLREGVEVIAI 471
             + S+  EG E    
Sbjct: 506 IRVASRPGEGSEFSFT 521


>gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
 gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
          Length = 1227

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 130/338 (38%), Gaps = 16/338 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDL 224
                +        +   L + L      A +    ++  L         +   A +   
Sbjct: 265 IATADLPGDVPPDAAGQALLLPLTATNEPAGALLLGVSRRLPFTDDYRDFVDLVAAQVSR 324

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLN 283
               + A              + AK+ F A++SHE RTPL  +LG   E++    +    
Sbjct: 325 AVGKQRAYEQERARAAELAALDRAKTNFFANVSHEFRTPLTLVLGPMEEMLADREL---- 380

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E Y + +  +HR+G  LL L+N +LD SR+E+GR         L D         +   
Sbjct: 381 PERYLDRLTVMHRNGLRLLKLVNTVLDFSRLESGRLAARYQPTDLSDYTSRLASTFRSAT 440

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +   + +     P  + V+ D     +++LNLLSNAVKFT   G + V V         +
Sbjct: 441 ERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLLSNAVKFTFD-GEIRVRV-RADDGAAVL 498

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  E+P V   F + + A     +G G+GL + + ++  HGG     S + 
Sbjct: 499 EVTDTGVGIAPEELPQVFERFHRVAGARSRTHEGTGIGLALVRELVEMHGGTVTAHSVVD 558

Query: 464 EGVEVIAI-------LPNTRVLNFIPEDNHESTQYKCY 494
            G             LP  RV    P    E  Q + Y
Sbjct: 559 RGTTFTVTMPFGYAHLPADRVAALSPVPLTEPEQARLY 596


>gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1000

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 14/267 (5%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                ++K AE  N AK+ FLA+MSHE+RTPLN I+G  +++    +    ++  K+Y+ 
Sbjct: 595 RALQRSKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVS 650

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +   S   L  L++++LDLSRIEAG   L +  ++  +++     +  L  +   +E+  
Sbjct: 651 NAISSSGRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELAL 710

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIK 406
           +I P L   +  D   +RQ++ NL+ NA+KFT   G +HV +   +      +   IS++
Sbjct: 711 EISPGLPQHILLDGGRLRQILFNLVGNALKFTEK-GHIHVRLDELAIHGGMRQLLLISVE 769

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +G +  +   F Q   +    + GVGLGL I + ++   GG   I S   EG 
Sbjct: 770 DTGIGIPQGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGT 829

Query: 467 EVIAILPNTRVLNFI---PEDNHESTQ 490
            +   LP           PE + E+ +
Sbjct: 830 RIHLSLPFRTCAPDSGDKPETSGETPE 856


>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
 gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
          Length = 949

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  +++  + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP     +  D   ++QVI NLLSNA+KFT + G + + +         IS++D 
Sbjct: 567 LYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDM-GCIILHL-RQDSDYLSISVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TIRIPL 690


>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
 gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
          Length = 949

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli E24377A]
 gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E24377A]
          Length = 949

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   + +D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|110834714|ref|YP_693573.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647825|emb|CAL17301.1| sensor histidine kinase/response regulator, putative [Alcanivorax
           borkumensis SK2]
          Length = 646

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 150/347 (43%), Gaps = 25/347 (7%)

Query: 147 IALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSMHVLDISLAGM-----LATAL 197
           I   +  +S+  L       +  S  P   A+     ++ ++     A +     L   L
Sbjct: 146 IGEVVLGMSSARLLARQKEILKASLIPAFFAIILGLWIAHYLTRQIAAPLGDLSGLLRTL 205

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-------LSDETRKRAEEENLAKS 250
            +  Y      +   ++   Q   ++L   LE A+           +  + A+  + AKS
Sbjct: 206 RYGEYTVRGRRRLQGELGELQDNINELAGALEGARRKQQAAMTELQDAHRHAQTASQAKS 265

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHELRTP+N +LG  +++E        N+   EY      S  HLL++IN+ILD
Sbjct: 266 DFLAMMSHELRTPMNGVLGMLQLLEETA----QNDEQHEYTQAALESTGHLLDVINDILD 321

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGM 368
            SRIEAGR +L  S   ++ +++ C+   +  A+ K + +  +   +L+     +D   +
Sbjct: 322 FSRIEAGRMDLDPSFFEILPLLKNCVATFRYVAESKGLYLQLEGAEALAGQVARSDPTRL 381

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFG 425
           RQV+ NL+SNAVKFT  GG                  I++ D G GI   +   +  +F 
Sbjct: 382 RQVLSNLISNAVKFTQEGGVTVSVSVSPVHGDWLDLSIAVADTGIGIPREKRAGLFKAFS 441

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q   +      G GLGL IA+ +    GG   +  +   G      L
Sbjct: 442 QIDSSTSRRFGGTGLGLAIARKLSEMLGGTLTVDGREEGGSIFTLSL 488


>gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 487

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRK---RAEEENLAKSRFLASMSH 258
           I   +      ++  +AE   L  +ELE+ +    E+ K    A E N  ++ F +++SH
Sbjct: 174 IADVIRNHKYTLIKNEAEWSVLKNSELELKEIKLKESNKMLGEALEYNKLRTEFFSNISH 233

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNE----TYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           EL+TPL  IL   +++  +    LN +    T K+YI  I ++   LL L+N I+DL++I
Sbjct: 234 ELKTPLTIILSALQLLNEKNSTHLNEKINENTEKKYIDIIKQNSYRLLRLVNNIIDLTKI 293

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           ++  +++    ++++++V   ++ +    +   I+I    D     +  D     ++ILN
Sbjct: 294 DSDFFDIQLKNLNVVEVVENTVLSVAEYIKSNGIKITFDTDVEEKIMAIDIDQFERIILN 353

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KF    G + V++ +       IS+KD+G GI + ++P +   F Q   ++   
Sbjct: 354 LISNAIKFAKPEGNIWVSL-YDKQDHLIISVKDDGKGIPKDKLPIIFERFYQIDKSLSRE 412

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            +G G+GL I +S++  HGG+  + S L  G E     P   +   IP  + 
Sbjct: 413 CEGSGVGLAIVKSLVEKHGGKITVNSTLGVGSEFTMKFPIRTIPEKIPTSSS 464


>gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 873

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 52/381 (13%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L++      ++      A  L   P  +A           L                 I
Sbjct: 363 GLVMVDGAGIVAVTNRRAADLLGLDPAFLASRPSCEAMREALQARGEFAALDPA-----I 417

Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL-EVAKSLSDE-----------TRKRAEEENLA--- 248
              L   ++  +  + E+     ++ EVA + + +            RK  E        
Sbjct: 418 RDGLRDRDLDRIGARYERVRPNGQVLEVANTATADGGILRIYTDVTARKAVETALAEAHR 477

Query: 249 ---------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                          K+ FLA+MSHE+RTPL A+LG+++++   +            +G 
Sbjct: 478 LAQQARRAAEAASAAKTDFLATMSHEIRTPLTAVLGYADLLMARS---DLEAEQARLVGR 534

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  +G+ L  +++++LD SRIEAGR +L+    SL D++ E + +++  A  K + I   
Sbjct: 535 IVTAGEALRTIVDDVLDFSRIEAGRVDLAPRPFSLADLIEEALALVRPEADRKGLPIAVA 594

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKD 407
           I+P L   +  D   +RQ++LNLL+NAVKFT   G + + V         GRG  IS++D
Sbjct: 595 IEPGLPPRLVGDVDRLRQILLNLLNNAVKFTPA-GSIGLAVARDPTGPAEGRGLLISVRD 653

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   +   F Q   +I+    G GLGL I++ ++    G+  + S+  EG  
Sbjct: 654 TGIGIPADKHARLFERFSQVDGSIQRQYGGTGLGLAISRRLVEAMHGRIGVESREGEGST 713

Query: 468 VIAILPNTRVLNFIPEDNHES 488
               L        +P    E+
Sbjct: 714 FWFRL-------ALPAAEPEA 727


>gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 1140

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 8/356 (2%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMS 181
           L   V               A       + A+ N ++P    LS  P +      +    
Sbjct: 222 LAAAVGLDPERLGLPLRMLGAAGDAPWPVQAVFNDLVPRVADLSALPDLPTGPWDRPPTQ 281

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             VL ++ AG    A  F   +  +                 + A L+ A +  +E R+R
Sbjct: 282 ALVLPLAQAGQTRAAGVFVAALNPYRPLDEDYRGFLGLFVGQVTAALKGANAY-EEERRR 340

Query: 242 AE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           AE   E + AK+ F A+ SHELRTPL  +LG  E +     GPL     +E +   HR  
Sbjct: 341 AEALAELDRAKTAFFANASHELRTPLTLMLGPLEDLLTGDAGPLT-ARQQEVLEMAHRGS 399

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL L+N +LD SR+EAGR + S     L  +  +     +   +   +    ++ P  
Sbjct: 400 LRLLRLVNTLLDFSRLEAGRAQASYVPTDLATVTADLASSFRSAMERAGLRYGVEVSPLS 459

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V+ D +   +V+LNLLSNA KFT   G V VT+    GR   + ++D+G GI   E+ 
Sbjct: 460 EPVYVDPEMWEKVVLNLLSNAFKFTLS-GEVAVTLAQ-EGREAVLRVRDSGVGIPAAELG 517

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F +       + +G G+GL + + I+A HGG+  ++S   +G      LP 
Sbjct: 518 RLFERFHRVEGQRGRSFEGTGIGLALVREIVALHGGRVEVQSAEGQGTTFTVRLPL 573



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 9/265 (3%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +     +         + E + A++   +  +     N    RF    SH+L+ P+  + 
Sbjct: 879  RDEAGRVRHMVGFVRDVTERKRAETALRQANEELSRSNAELERFAYIASHDLQEPIRTVG 938

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             F+ ++     G + +E  ++Y+  +      +  L++++L  SR+ A         + L
Sbjct: 939  SFAGLLARR-YGDVLDERGRQYLHTVELGALRMKTLVDDLLVFSRLNAAHPPFQL--LDL 995

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
               V E +  L +  QE    +       L +V+ D   + Q+  NL++NAVKF   G  
Sbjct: 996  NVPVHEALARLDMTLQETGARVTV---GDLPTVYGDPSRLAQLFQNLIANAVKFRREGVP 1052

Query: 389  VHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              VT+G   +G   ++++ DNG GI +     +   F +     +   +G GLGL I Q 
Sbjct: 1053 PEVTIGAARAGNLWHLTVSDNGIGIEQAYFTRIFEMFQRLHS--RDRYEGSGLGLAICQK 1110

Query: 448  IMANHGGQFLIRSKLREGVEVIAIL 472
            I+A HGGQ  + S    G      L
Sbjct: 1111 IVAQHGGQMWVESTPGAGSTFHFTL 1135


>gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
 gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
          Length = 1937

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 19/386 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L ++   +
Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +      A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++     G L +   +E+  
Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    ++L DI        +  A+E+++    
Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFVI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------RGQYIS 404
            ++DP L   +  D K ++QV+ NLLSNA KFT   G V + +G   G       +   +S
Sbjct: 1351 EVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLKIGSAEGSPLRAGTQWIAMS 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIAE +   +  +F Q          G GLGL I++ I    GG+ ++ S++  
Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGT 1469

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP       +     E++ 
Sbjct: 1470 GSTFTLFLPFEPPAQALTGRAAEASD 1495


>gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 836

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 163/296 (55%), Gaps = 2/296 (0%)

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
            +I         +  F  +      +   I          +   +  +   D+ R+ AE 
Sbjct: 533 REILGLTRQGGQIPIFMTLGKIGSSAASGIDQRYCALLRDMTHWKKVERELDDARREAER 592

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  KS FLA +SHE+RTPLNAI+GF+EVI  E  GP+ N  YK+Y+ DIH SG  +++L
Sbjct: 593 ASALKSDFLAKVSHEIRTPLNAIIGFAEVIMEERFGPIGNARYKDYLKDIHSSGSLVMSL 652

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +N++LDLS+IEAG+ +LS  A+    IV EC+ ++Q +A    + I   + P L  ++AD
Sbjct: 653 VNDLLDLSKIEAGKMDLSFEAVDANRIVTECVSIMQPQASSARVVIRLSLAPQLPHIFAD 712

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E+ +RQ++LNLLSNA+KFT  GG+V V+          + I+D G G++EG++   L  F
Sbjct: 713 ERSVRQIVLNLLSNAIKFTQGGGQVIVSTALNDENCAALRIRDTGVGMSEGDLKVALEPF 772

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GQ          G GLGLP+ ++++  +   F I+SK+++G  V       RV+  
Sbjct: 773 GQA--PRARGSGGTGLGLPLTKALVEANRASFSIKSKVQDGTLVEVAFLPARVVAA 826


>gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
 gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
          Length = 565

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++  AL     +    ++     L    +        ++A + + E+RKRAEE   A   
Sbjct: 148 VIVGALIVQVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRD 207

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A ++HELRTPLN +LG +E+I    +      + +E + ++ +SG+ L  +IN++LD 
Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSS----SQREIVNNLSQSGEFLRTIINDLLDY 263

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+I AG  EL     +L D+      +   RA EK I+    +   +    + D + + Q
Sbjct: 264 SKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQ 323

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           + +NL+ NA+KFT   G V V + W + +    S++D+G GIA+  I T+   F Q   +
Sbjct: 324 LFVNLIGNAIKFTDQ-GHVSVEIKWLNDQFI-FSVEDSGVGIAQSAIKTLFEPFTQADNS 381

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                +G GLGL I + + A   G   + S +  G      LP  +V++ + E + 
Sbjct: 382 SSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPL-QVVDTLAERDS 436


>gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 444

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           NL K  F  ++SHEL+TP++AI G +E++        +     E++  I      +  L+
Sbjct: 218 NLQK-EFFGNVSHELKTPISAIKGCTEILLNGA--KNDPAVLDEFLTMISDENNRMEQLV 274

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L ++R E  + ++      L +++ +CI+     A+ K+ +I  +  P    +  D 
Sbjct: 275 KDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDY 333

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++   LNLL+NA+ ++     + V      G    I + D G GI   ++P +   F 
Sbjct: 334 IQLKHCFLNLLTNAIHYSGENTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFY 392

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A      G GLGL I QSI+  H G+ ++ S+L  G      LP  +
Sbjct: 393 RVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPKKK 443


>gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
 gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
          Length = 635

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL  +  + + +        + +    ++       + ++
Sbjct: 399 EKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAW--QDKDLAPTFLNVTQTETERMI 456

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y  S   I+ +      I   ++  ++  I   + +      V 
Sbjct: 457 RLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVA 515

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QV+ N++SNA+K++  GG +  ++   +     +SIKD G GI +  +  +  
Sbjct: 516 IDQDKITQVLDNIISNAIKYSPEGGIITFSIAQHT-HEIVVSIKDQGMGIPKSNLAKIFE 574

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G GLGL IA+ I+  H G+    S+  +G  +   LP  
Sbjct: 575 RFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLPIE 627


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 9/306 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +  AL  ++      L  +   +  T +++         +  + ++S   E      ++ 
Sbjct: 608 MRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGFIVVVSDITEIKVAEQQMA 667

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +        AE    AKS FLA+MSHE+RTP+NAI+G + ++  +T   L     +E
Sbjct: 668 ALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSL----QRE 723

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +G I  + +HLL +IN++LDLS+I+AG+  L ++  +L +++     ++   A EK +E
Sbjct: 724 RLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANEKGLE 783

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
           +    D   S +  D   + Q ++NLL+NAVKFT   G V +     +           +
Sbjct: 784 LVLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHA-GWVRLRGELLAEDRQRVQVRFEV 842

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI      ++  +F Q   +      G GLGL + Q ++   GG+  +RS+   G
Sbjct: 843 QDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGVRSEPGVG 902

Query: 466 VEVIAI 471
                 
Sbjct: 903 STFWFT 908


>gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
 gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
          Length = 588

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1713

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 17/382 (4%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               L+V  +       ++ L     +T E + + +  +  + + I+ L +      + L 
Sbjct: 877  LNVLVVPVLFEEALIGVIELASFEGFTDEQVEVIELISSNLGIVINNLRSQERTQTLLLE 936

Query: 167  FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                   L  Q   + S +   +    +L T+       +  L  SN ++   Q      
Sbjct: 937  TQRQSEELQAQQEELKSSNESLLEQTQLLKTSEEELKQQSEELKVSNEELEEKQVFLKRQ 996

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             +E+E AK+      +     +  KS FLA+MSHELRTPLN++L  ++ +         +
Sbjct: 997  KSEIEAAKTDLTIKAEELALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNK-SQHLD 1055

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            ET  E    I   G +LL LIN+I+DLS++EAG+  +    +S+  + R    +    A+
Sbjct: 1056 ETEVEDAKIIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVSIAVLCRNLRQVFDPIAK 1115

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            ++ + +  ++D  L  +V +D   + Q++ NLLSNA+KFT   G V + +G+ +    + 
Sbjct: 1116 DRELVLNIEVDDKLPSTVRSDGHRVEQILRNLLSNALKFTET-GSVTLKIGYVAPNTLFS 1174

Query: 403  -----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        S+ D G GI E +I  +  +F Q   +      G GLGL IA+ +   
Sbjct: 1175 HSSLDAETALSFSVVDTGIGIPENKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRL 1234

Query: 452  HGGQFLIRSKLREGVEVIAILP 473
             GG+  ++S L EG      LP
Sbjct: 1235 LGGEIQLQSVLDEGSTFTLYLP 1256


>gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Escherichia coli O157:H7 str. EDL933]
 gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO]
 gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO]
 gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082]
 gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO]
 gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082]
          Length = 611

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VVLSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EDL933]
 gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. Sakai]
 gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EC4024]
 gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK966]
 gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. G5101]
 gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. LSU-61]
 gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1125]
 gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1044]
          Length = 949

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 586

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 154/339 (45%), Gaps = 20/339 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217
             +  +    ++  L T  I++  +L     G+++      FF  I   L KS +++   
Sbjct: 1   MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +   L  +     +         E+ N  KS  +A++SHELRTPLN I+G S ++   
Sbjct: 61  VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     +  +EY+  I+ S   L ++ ++I+DL +I++ R EL    I    ++ +   
Sbjct: 114 EL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              L A++  I+        L + ++ D   + Q++ NL+SNAVKFT  GG ++++V   
Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S++D G GI + E   V   F Q   + +   QG G+GL I++ I    GG  
Sbjct: 230 DNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            +RS++ +G      +         P +  +S +   +A
Sbjct: 290 TLRSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322


>gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 1111

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 13/335 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           +IA  ++ + +FML +  F +   +V         +   LD +        L       +
Sbjct: 556 VIAALLTPVGSFMLVFLSFAATISLVFLGIRAQTPASAHLDTAFWKAFFVLLVIGGITAW 615

Query: 206 HLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            L  +    L  Q E           I   +   +   + ++ AE  N+AKSR++  +SH
Sbjct: 616 ALVLARQSRLVAQEEPRRQTSLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISH 675

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELR+PLNAILG+++++E +T  P   E  ++ +  I RSG+HL  LI  +LD+S+IEAGR
Sbjct: 676 ELRSPLNAILGYAQLLERDTAIP---ERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGR 732

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377
            EL    I   + + + + ML+L+A+ K+I         +  V   DE+ +RQ+++NLLS
Sbjct: 733 IELYRDEIRFPEFLDQIVQMLRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLS 792

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG V + + + S     I + D G GIAE ++  +   F +G+ +   +  G
Sbjct: 793 NAIKFTRAGG-VTLRLRFRSE-VAEIEVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPG 850

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           VGLGL I ++++   GG   + S+L EG      L
Sbjct: 851 VGLGLTITKTLVEVMGGDIAVWSRLGEGSRFRVRL 885


>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++             K + 
Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 550

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668

Query: 469 IAILPN 474
              +P 
Sbjct: 669 TVRIPL 674


>gi|295688144|ref|YP_003591837.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430047|gb|ADG09219.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 587

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 184/471 (39%), Gaps = 33/471 (7%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
           D  +  +  ++ +R++P   +   + A I        I   W +  LA       + ++ 
Sbjct: 10  DTRLDEVAADT-YRLTPSRLVSAAVAAVIVGLGLGATIAAGWLVSLLAGEGLAYLVTRRF 68

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
            +       +       +   + I   W  L  +       +      +      +    
Sbjct: 69  RSGRTGTARLRA---LFIWASVPINASWAALAALLWLQGHGDTRLGAVAIWCGQLIYTQN 125

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
             +   P  V     P+V  +             +L       L   T I   L      
Sbjct: 126 FRHQSAPLLVLNGLAPMVSLIVFPFFFLPGDELETLTARWGLFLLVATTINVMLLNRAAA 185

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  +D              + R++A E   AKS F+A  SHELRTP+N +LG +  
Sbjct: 186 RRMDDLTRD------------LRQEREKALEAARAKSTFIAVASHELRTPMNGLLGMAHA 233

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    +   +E +  + RSG  L++L+N++LDLSRIE GR EL+ + I+L  ++ 
Sbjct: 234 LGRSDL----SAAQREQVDLMIRSGDSLMHLLNDVLDLSRIETGRVELAPADIALPRVMT 289

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHV 391
           E +   +  A  K + +     P L + + AD+  +RQV+ NL+SNA+KFTA GG  + V
Sbjct: 290 EVVNAWRDAAAFKGLSLSIDFAPDLPAAIHADDLRIRQVMTNLVSNAIKFTAEGGVAIEV 349

Query: 392 TVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                    + I  ++ D+GPG+ +     V  SF Q    +     G GLGL IA+++ 
Sbjct: 350 GATTAPDGRRMIAITVADSGPGVPDHARERVFDSFTQADETVSRDYGGAGLGLSIARALA 409

Query: 450 ANHGGQFLIR-SKLREGVEVIAIL------PNTRVLNFIPEDNHESTQYKC 493
              GG  ++  S++  G   +         P     +  P +     Q + 
Sbjct: 410 RRMGGDLVLAPSRM--GARFLFTFEAVETVPVRERADDTPPEAPALDQLRV 458


>gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes]
          Length = 616

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + + L  +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 328 SILHDITSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 383

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 384 AVQLL-GFYEKDVDYEKEDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 442

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 443 SLIEEITLSVTSYAESKEINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNPGGNI 502

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V   S    YI +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 503 FVNVK-DSEEYVYIHVKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 561

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G+  I S+L +G E I  LP 
Sbjct: 562 EMHKGEVTINSELGKGTEFIIKLPA 586


>gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1482

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 157/378 (41%), Gaps = 19/378 (5%)

Query: 115  IAIGLCWTLLTLVEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFPV 170
               G     + +      T     I          L  + +++++ F   +  FL     
Sbjct: 812  ALTGAPAGYVPIRSGLGQTDATNVIVLPVLFERQTLGVIELASVNVFTQTHRDFLETLKE 871

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             +  +   I +    D  L              +  L +SN ++    A+      ++E+
Sbjct: 872  TIGTAVNTITTNVRTDALLRESQRLTTELQKRQSD-LQESNNELEDKAAQLARQNKDIEI 930

Query: 231  AKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              +  ++ R     RA++    +  KS F+A+MSHELRTPLN++L  + ++       L 
Sbjct: 931  KNTEIEQARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLADNVDTNLT 990

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                 ++   IH +G  LL LIN+ILDLS+IEAGR E+   +  + D+        Q  A
Sbjct: 991  -PRQVDFAQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAATFQPLA 1049

Query: 344  QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSG 398
             EK + +   +      +V AD + ++Q++ NLLSNAVKFT   G V + V    G    
Sbjct: 1050 AEKGLRLRVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDT-GEVTLRVTAARGAHGE 1108

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 ++ D G GIAE ++  +  +F Q          G GLGL I++ +      +  +
Sbjct: 1109 PAIAFAVVDTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLSAELRV 1168

Query: 459  RSKLREGVEVIAILPNTR 476
             S    G      LP   
Sbjct: 1169 SSAPGRGSTFTLQLPIEP 1186


>gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 588

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQNPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 682

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKS+FL++MSHE+RTPLN I G    +    +    N    E++  I  S   LLNLIN+
Sbjct: 84  AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLEHVNIIKASTDSLLNLIND 139

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           ILDLS++EAG  +LS   + L  ++ E   +    A +K +E+   +D  +   V  D+ 
Sbjct: 140 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKF 199

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416
            +RQV+LN++ NA+KFT   G + +                       + D G G  + E
Sbjct: 200 RIRQVLLNVVGNAIKFT-EHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAE 258

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   F Q   +      G GLGL I+   +  HGG+   RS   +G      +
Sbjct: 259 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 314


>gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1057

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 24/370 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L+ P T     + I +   +   L+  +    +L          +  AL    ++++   
Sbjct: 222 LLAPVTADGRVIGIIELGRVTDPLTAGSREEELLARCGENIGLALRTALLRAQLVTLLEE 281

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE- 244
               +  L T           L +    +   Q++ +   AELE      +E  +  E  
Sbjct: 282 TQRQSEELQTQQEELRVANEELEEQRRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQ 341

Query: 245 --------------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                                +  KS FLA+MSHELRTPLN+ L  ++++     G L+ 
Sbjct: 342 RQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLST 401

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  S   LL LIN+ILDLS+IEAG  EL++  ++   +++      +  A+
Sbjct: 402 EQVK-YAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLAR 460

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +         + +  D + ++Q++ NLL+NA+KFT   G+V ++V   +      
Sbjct: 461 QKGLALEIAAVADAPTQLVVDNQRLQQILKNLLANAIKFT-EHGKVSLSVQAHAPGRVRF 519

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  +   +  +F Q   + +    G GLGL I++ +    GG   + S+  
Sbjct: 520 AVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPG 579

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 580 RGSCFTLELP 589


>gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 592

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +  F+A++SHEL+TPL++I  ++E +    M   + E  K ++  I     
Sbjct: 362 RRLESL---RQEFVANVSHELKTPLSSIKAYTETLIRGAMD--DPEINKTFLLRIEEQAD 416

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI +++ L+ IE+G        I L   V  C++  Q  A+ K IE+  +      
Sbjct: 417 RLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKVAESKQIELLIEESEPGI 476

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V ADE+G+ Q++ NL++NA+K+T   GR+ +      G    + ++D G GIAE     
Sbjct: 477 KVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVLLQVQDTGIGIAEKYQAR 536

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   A      G GLGL I + ++ +  G   + SK+ EG      LP 
Sbjct: 537 LFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKVGEGSTFSVRLPR 591


>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus LGP32]
 gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio splendidus LGP32]
          Length = 1129

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 154/358 (43%), Gaps = 8/358 (2%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
             W L+  +           + K   +++  +I  +       + F++   + +  + + 
Sbjct: 333 ATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEK 392

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237
           + +  + +  +       +         + +S  + +L  +++ D+L   L+  +  ++E
Sbjct: 393 VSAGDLDETMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIQKQNEE 452

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+     K  +  I  S
Sbjct: 453 ----LQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPI-PANQKYQLDIIINS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L  L++++LD  ++  G  ++++SA+ L       + +       K I I  ++   
Sbjct: 508 GQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V +D + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 568 LGLVSSDPQRLEQVMYNLVGNAIKYTSE-GKIVISASVIDDN-IRVQVVDTGQGIPAEYL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +     Q      +  QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 626 EHIFEPLIQAGQDSSNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLA 683


>gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 751

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E    +      R+ A   +  KS FLA++SHE+RTPLNA+LG ++++    +    ++ 
Sbjct: 353 EQAECERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTATPL----SDE 408

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + ++     +GQ L  LI+++LDL +IEAGR EL      L   +     +LQ RA  K
Sbjct: 409 QRRHVDVFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAK 468

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            +     +D  L   V  D + + Q + NLL NA+KFTA  G V +    ++  G   ++
Sbjct: 469 GLRFVLDVDEDLPAWVSGDRRRVEQALTNLLGNAIKFTAR-GEVSLQAARSAAGGVRFTV 527

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA  +   V   F Q    I     G GLGL I ++     GG   + S+   G
Sbjct: 528 RDTGIGIAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVG 587

Query: 466 VEVIAILPNT 475
                 LP  
Sbjct: 588 STFTLELPLA 597


>gi|323526066|ref|YP_004228219.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323383068|gb|ADX55159.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 657

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 13/280 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +E++ +  E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+E
Sbjct: 259 DVHSEREAM-QERERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE 317

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              M     +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + +++   
Sbjct: 318 ---MIADLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + + +   Q K  ++    D +   V AD   ++Q++ NL+ NA KFT  GG ++V    
Sbjct: 375 LELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  IS++D G GI   +I  +  +F QG   +     G+GLGL I +++   HGG 
Sbjct: 434 DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493

Query: 456 FLIRSKLRE--GVEVIAILP----NTRVLNF-IPEDNHES 488
              +S      G      LP      R     IPE  H +
Sbjct: 494 VTAQS-PGAHCGATFTITLPTAAAPARTSQAVIPEPVHPA 532


>gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 263

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 16/261 (6%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E+E AK   +E   +    +  KS FLA+MSHELRTPLN++L  ++ +     G L+   
Sbjct: 5   EVEQAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLS-AK 63

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E+   IH SG  LL LIN+ILDLS+IE+G   L  S     ++        +  A+ K
Sbjct: 64  QVEFAKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEAK 123

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----- 400
           ++    ++  +L + V  D   ++QV+ NLLSNA KFT   G V +T+   +        
Sbjct: 124 HLGFSVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFT-SHGNVSLTISLVTSGWTADHP 182

Query: 401 --------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S++D G GI   ++  +  +F Q   +      G GLGL I++ +    
Sbjct: 183 HLLHADAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLL 242

Query: 453 GGQFLIRSKLREGVEVIAILP 473
           GG+  + S +  G      LP
Sbjct: 243 GGEIRVESTVNIGSTFTLYLP 263


>gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
 gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
          Length = 1297

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 9/270 (3%)

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            IL   AE       L + ++  +  R        AKS FLA MSHE+RTP+N I+G +EV
Sbjct: 890  ILRDDAETKMFEEMLSIIQNRINMQRHDL--SAQAKSDFLARMSHEIRTPMNGIIGMTEV 947

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                       +   E +  I  +  +LL ++N++LD+S+IE+G+ +L     S+ D+++
Sbjct: 948  ALR---PDQTEDKRIECLKKIDSASGYLLGILNDVLDMSKIESGKMKLVIDKCSIPDMMK 1004

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                ++  +  EK+I   Q I       + DE  + Q+++NLLSNAVK++ +GG V +TV
Sbjct: 1005 NIDSIMDAKMNEKDITFVQNITLLHDWYYGDELRLNQILVNLLSNAVKYSNLGGHVDLTV 1064

Query: 394  GW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        Y ++KDNG GI E +   +   F Q   +  + +QG GLGL I+  ++
Sbjct: 1065 KELPVDEKHSDIYFAVKDNGIGIPESKQQLIFQRFEQADDSANARKQGTGLGLAISSRLV 1124

Query: 450  ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                    + S++ +G      +   RV  
Sbjct: 1125 HMMDSDIKVASEVGKGSCFSFTVRLERVPE 1154


>gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 411

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + L +  ++ A      KS F+A+MSHE+RTPLNAI+GFS ++        ++
Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  +  +   LL ++ ++LDLS+IE+G  +   S   + D++     +L +R +
Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLK 283

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  I++  K       +++++  + Q+I NL+ NA+KFT   G +            Y 
Sbjct: 284 DKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  GE   +   F +          G GLGL ++Q+I+ N GG+  + S++ 
Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 399 KGSTFWFTLPLK 410


>gi|170078014|ref|YP_001734652.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169885683|gb|ACA99396.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 672

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 9/246 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K AE  N AKS+F++++SHELRTPL  I  F E +  E    L  +  ++++   +    
Sbjct: 414 KEAE-LNKAKSQFISNVSHELRTPLFNIKSFIETL-HEYGDDLTEQQRQDFLETANNETD 471

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+N++LDLSR+E+ R       + +   + + +   QL A++K I +  ++   L 
Sbjct: 472 RLTRLVNDVLDLSRLESSRV-YRLDEVDISQPIEQTLRTHQLNARDKEITLTHELATDLP 530

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEI 417
            +      + QV+ NL+ NA+KFT  GG V V             I I D G GI   + 
Sbjct: 531 MILGHYDLLLQVLTNLVGNALKFTQAGGCVSVRAYPVPHDPERVRIEISDTGIGIDPEDQ 590

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F +         +G GLGL I ++I+  H  +  + S++  G      L    V
Sbjct: 591 EAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHNSRIHLISEVGIGTTFWFEL---NV 646

Query: 478 LNFIPE 483
               PE
Sbjct: 647 AQGTPE 652


>gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 411

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + L +  ++ A      KS F+A+MSHE+RTPLNAI+GFS ++        ++
Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  +  +   LL ++ ++LDLS+IE+G  +   S   + D++     +L +R +
Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLK 283

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  I++  K       +++++  + Q+I NL+ NA+KFT   G +            Y 
Sbjct: 284 DKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  GE   +   F +          G GLGL ++Q+I+ N GG+  + S++ 
Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 399 KGSTFWFTLPLK 410


>gi|150015251|ref|YP_001307505.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901716|gb|ABR32549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 682

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 142/273 (52%), Gaps = 6/273 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++ ++ + +   L + +E  K L  +      E N   + F +++SHEL+TPLN +LG  
Sbjct: 396 LRDITSRKQIQLLESNIEENKKLISKAT----ELNKMMTEFFSNISHELKTPLNVLLGAV 451

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++ L        E+ K Y+  + ++   L+ L+N ++D+S+ ++G ++++    +++ +
Sbjct: 452 QILSLSGNDKNKLESGK-YLKTMKQNCYRLVRLVNNLIDISKFDSGYFKMNLQNYNVVSV 510

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + +  + +   A  K I++    D     +  D   + +++LNLLSNA+KFT  GG++ V
Sbjct: 511 IEDITLSVADYANNKGIDLIFDTDVEEKDMAIDLDKIERIMLNLLSNAIKFTDKGGQILV 570

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            + +       IS+KDNG G+ + ++  +   FGQ    +    QG G+GL + +SI+  
Sbjct: 571 NM-YDKKDNIVISVKDNGVGMPKDKLNMIFERFGQIDKTLARNSQGSGIGLSLVKSIVDM 629

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           H G     S+  +G E +  LP   V + +  D
Sbjct: 630 HNGDIKAFSEFGKGSEFVVKLPVRFVEDKLSSD 662


>gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. 493-89]
 gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. H 2687]
          Length = 949

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ +  +     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TVRIPL 690


>gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW]
 gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW]
          Length = 821

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 141/256 (55%), Gaps = 7/256 (2%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A +E A   ++E     E  +  KS F+A++S++LRTPLNAI+GF+E++  +  GPL N 
Sbjct: 565 ARVEQALRATNEA---LETADRLKSEFIANVSYQLRTPLNAIMGFAEILNNQYFGPL-NP 620

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              EY   +  + + LL L+N+ILDL+ IEAG   L  + + +  +V    ++ +  A++
Sbjct: 621 RQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVNGVAMLTRDWARQ 680

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           + +++   I   + ++ ADEK ++Q + NL+SNAV+FT  GGR+ ++    +G    +S+
Sbjct: 681 QELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILSARR-AGDEVVLSV 739

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI + +   V   F +     +S   G GLGL + +S +  HGG+  I S    G
Sbjct: 740 RDTGIGIPQDDQQRVFGRFERAHH--QSRSGGAGLGLSLVKSFIELHGGRVEIDSAPEHG 797

Query: 466 VEVIAILPNTRVLNFI 481
            EV   LP    L   
Sbjct: 798 TEVRCHLPTAPALAEP 813


>gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 411

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + L +  ++ A      KS F+A+MSHE+RTPLNAI+GFS ++        ++
Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  +  +   LL ++ ++LDLS+IE+G  +   S   + D++     +L +R +
Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLK 283

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  I++  +       +++++  + Q+I NL+ NA+KFT   G +            Y 
Sbjct: 284 DKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  GE   +   F +          G GLGL ++Q+I+ N GG+  + S++ 
Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 399 KGSTFWFTLPLK 410


>gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 411

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  + L +  ++ A      KS F+A+MSHE+RTPLNAI+GFS ++        ++
Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  +  +   LL ++ ++LDLS+IE+G  +   S   + D++     +L +R +
Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLK 283

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  I++  +       +++++  + Q+I NL+ NA+KFT   G +            Y 
Sbjct: 284 DKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI  GE   +   F +          G GLGL ++Q+I+ N GG+  + S++ 
Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398

Query: 464 EGVEVIAILPNT 475
           +G      LP  
Sbjct: 399 KGSTFWFTLPLK 410


>gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
 gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
          Length = 572

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 9/311 (2%)

Query: 178 AIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                ++L + L    ++  AL     +    ++     L    +        ++A + +
Sbjct: 132 PHWQGNLLTVPLEVEKVIVGALIVKVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRN 191

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E+RKRAEE   A   F+A ++HELRTPLN +LG +E+I    +      + +E + ++ 
Sbjct: 192 VESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTELSS----SQREIVNNLS 247

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +SG+ L  +IN++LD S+I AG  +L     +L D+      +   RA EK IE    + 
Sbjct: 248 QSGEFLRTIINDLLDFSKINAGMLDLIPKKFALHDLRNTIESIFVNRAIEKQIEFNISVA 307

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            ++      D + + Q+ +NL+ NA+KFT   G V+V + W   +    S++D G GIAE
Sbjct: 308 SNVPSHFQGDLERITQLFVNLIGNAIKFTEE-GHVNVDIEWDKNQFV-FSVEDTGVGIAE 365

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q   +     +G GLGL I + ++A   G   + S +  G      +P 
Sbjct: 366 SAHKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVALMNGVIGVTSVVGSGTTFTISIPL 425

Query: 475 TRVLNFIPEDN 485
             V      D+
Sbjct: 426 QVVDVPAESDS 436


>gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 480

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 13/318 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           M    +        +A+    I     +  SL  +   +    +     L    +++ + 
Sbjct: 175 MFLQLIRSLGIATALAIGGMCIAIAFYIKRSLQPLQLMSQLTESISADDLGDVQIQLDNA 234

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E  +L           DE   R  E    + +F++++SHELRTPL  + G+ +     
Sbjct: 235 PTEVRELAQTF-------DEMLVRLNEALENQRQFVSNVSHELRTPLTLVSGYVQSTLRR 287

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G   +   +E +          + ++ ++LDL+R ++G    +  +  L ++V E   
Sbjct: 288 --GANLSPPQREALEIASSEADRTVQMLQDLLDLARADSGHIHFNLESFVLDELVEEVAE 345

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           M +   Q     I  +       V  D   ++QV+LNL+ NAVK++++   V V +    
Sbjct: 346 MAR---QYTKRVIKVECIKPGIWVKGDINRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVD 402

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           GRG  I + D G GI   +   +   F +       +  G GLGL I ++++   GG   
Sbjct: 403 GRG-RIEVCDRGIGIPLKQQARIFDRFYRVDETRTRSTGGAGLGLSIVKTLVEGMGGSVK 461

Query: 458 IRSKLREGVEVIAILPNT 475
           +RS+L +G      LP  
Sbjct: 462 VRSQLNKGSIFTVCLPLQ 479


>gi|260439232|ref|ZP_05793048.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876]
 gi|292808247|gb|EFF67452.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876]
          Length = 440

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F A++SHEL+TPL AI G+SE+I+    G   +E    +  +I+ +   LL LIN+
Sbjct: 222 MRQEFTANVSHELKTPLTAISGYSELIKNGMAG---SEDIGRFANEIYTNANRLLTLIND 278

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           I++LS ++ G   L    + + +I   C+ ML   A+E  + +    + ++  V  ++  
Sbjct: 279 IINLSELDRGA-PLEYEDVDISEIAGNCVSMLDFHAKENQVTLHFDGEKTI--VRGNKNK 335

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + +V+ NL  NA+++   GG V VTV  T      +S++DNG GI++     +   F + 
Sbjct: 336 LEEVVYNLCDNAIRYNKAGGEVWVTVKNTPEGKI-LSVRDNGIGISKENQKRIFERFYRV 394

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +      G GLGL I + I+  H     + S    G  +  I
Sbjct: 395 DKSRSKKTGGTGLGLAIVKHIIEQHNFNIEVISDENTGTTINVI 438


>gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 624

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 24/366 (6%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM- 180
           T++ L      T    T+   A LL+      L    L    +    P +  L     + 
Sbjct: 2   TVVMLESLIRETDALETLTGDALLLVDRDGIILHATALASCFYGLPAPQLTGLPLGLALN 61

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                +I L      AL  +  +  H       +L         +  L  AK+  +E R+
Sbjct: 62  DSAAREICLPATGRPALVRWEPLPGHGHSLRRVLLRD-------LTPLRAAKTKLEEARE 114

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A+    AKS FLA+++HE+RTP+  ILG +E+     + P      +EY+     S Q 
Sbjct: 115 AAKAGERAKSHFLANITHEIRTPMIGILGMTELAMATELSP----KQREYLEMARHSAQS 170

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N+I+D +RIE G +EL+ +  SL + V E I + +  A +K + +  +   ++  
Sbjct: 171 LLTVLNDIVDYARIETGAFELARTPFSLRETVEEVISVFRPLAAKKGLSLTYRCIGAVPQ 230

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIA 413
            +  D   +RQV++NL+ NAVKFT   G V + V    G            ++D G GI 
Sbjct: 231 TLVGDPSRLRQVLINLVGNAVKFTDA-GSVVLAVARIGGGQANDQTRLRFEVRDTGIGIP 289

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI---- 469
             +I  +  SF Q  ++     QG GLGL I + ++    G + + S+  +G        
Sbjct: 290 GDKIKAIFDSFTQADVSPARRYQGAGLGLAIVRQLVEMMQGSYNVASEEGKGSVFTIEAD 349

Query: 470 AILPNT 475
             LP +
Sbjct: 350 FSLPVS 355


>gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 392

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +E    +  F+A++SHELRTPL+ I GF E +        N E    ++G I +    
Sbjct: 161 RLKELENTRQEFVANVSHELRTPLSLIKGFVETLIDGA--KDNPELCTRFLGTIEKHTDR 218

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI ++L +S++E+G+  ++ + ++L + V   +  LQ RA  KN+++   +   L  
Sbjct: 219 LTFLIEDLLTISKLESGQIVMNLNEVNLNNEVGRAVDDLQSRASGKNVKLQNTLAEDL-K 277

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
             AD   ++QV+ NL+ NA+K+   GG V +      G    I +KD+GPGI +     V
Sbjct: 278 ARADADRLQQVLFNLIENAIKYGRTGGNVTIGGKALPGDKVEIWVKDDGPGIPDEARERV 337

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A      G GLGL I + I+  HGG+  + S+  +G      L
Sbjct: 338 FERFYRVDRARSRETGGTGLGLAIVKHIVQAHGGEVWVSSEPGQGTTFYFTL 389


>gi|58584388|ref|YP_197961.1| membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418704|gb|AAW70719.1| Membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 475

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 3/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              ++ +         + ++  E+EN  K +F AS++HELRTPLNAI+GF+E+I+ ET+G
Sbjct: 212 NTQMLVKQHKTNIELQQMKEALEQENTNKLKFFASVTHELRTPLNAIIGFAELIKNETLG 271

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            ++N  YKEY+ DI+ +G HLL LIN++LD S+ E+    + +   +L  I+  C+ ML 
Sbjct: 272 SMDNYQYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLNMLS 331

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399
            + +E  I + ++I      V AD K M+QVI+NLLSN++KFT   G + + +       
Sbjct: 332 PKLKETGISLEKEIPNRQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKN 391

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I   DNG GI + +I  V++ FGQ     ++  +G G+GLP+++ ++   GG F I+
Sbjct: 392 LLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGTFNIK 449

Query: 460 SKLREGVEVIAIL 472
           S+ + G  +    
Sbjct: 450 SEAKLGTTITLNF 462


>gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 588

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 737

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+ F+A++SHELR+PL +ILGFS  +  E    L+ ET  E++G IH   + L +LI 
Sbjct: 508 RLKNDFIANVSHELRSPLFSILGFSSTLLKER-KELDFETTGEFLGIIHDESKRLSSLIE 566

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L++SRI++G+    +  I    +V      L++ A EK++E    ++P    V AD  
Sbjct: 567 DVLNVSRIDSGKVAYKKKIIDPAPVVIGACESLKMMASEKSVEFSIHVEPETMQVNADPD 626

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++QV++NL  NA+KFT   G V V++         +++KD+G GI E +   +   F +
Sbjct: 627 ALKQVVINLAVNAIKFTPRDGCVRVSLS-NDAHWMVLTVKDSGVGIPESDYDKIFEKFYR 685

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                +   +G GLGLPI + I+A H G   + SK   G      LP +
Sbjct: 686 VERPGE-EIEGTGLGLPIVKEIIAAHKGSIEVNSKKDFGSTFFVRLPLS 733


>gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
 gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
          Length = 1457

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 95/405 (23%), Positives = 163/405 (40%), Gaps = 24/405 (5%)

Query: 107  RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
            R  + VG +  G       L +        L +     LL  +  ++++ F   +  FL 
Sbjct: 898  RRTIRVGAVPDGRITLRSGLADTPPADLVVLPVLFEGELLGVIEFASVTPFSELHLSFLE 957

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + ++   I +    +  LA     A       +  L ++N ++        +   
Sbjct: 958  RLVATIGIAVNTIQANRRTEELLAQSQRLAH-ELQEQSAELQRTNAELEEKATLLSEQKG 1016

Query: 227  ELEVAKSLSDETR----KRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +E      +  R    ++A++   A   KS FLA+MSHELRTP    L     +  E  
Sbjct: 1017 NIETKNREIEMARLGLEEKAQQLTRASAYKSEFLANMSHELRTP-LNSLLLLARLLAENS 1075

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                     E+   IH SG  LL LI++ILDLS+IEAGR ++  + +   +I        
Sbjct: 1076 ERNLTPKQIEFARTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVRFEEIRSYVEQAF 1135

Query: 340  QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              +A+EK ++   ++   L   V  D + ++Q++ NLLSNAVKFT   G V + +     
Sbjct: 1136 APQAEEKGLDFQVRVAKDLPPAVVTDAQRLQQILRNLLSNAVKFT-DNGAVTLRISRAPE 1194

Query: 399  RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
               +              ++ D G GI++ ++  +  +F Q          G GLGL I+
Sbjct: 1195 HAVFDVPALINARQVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSIS 1254

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            + +    GG   + S   +G      LP+    + +      S Q
Sbjct: 1255 RDLARLIGGTITVSSAPNQGSTFTLYLPDVLAPDAVVAPAPPSPQ 1299


>gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 619

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   +  F++++SHELRTPL ++  + E +    +   + E    ++G +    + ++
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELAPRFLGVVSDETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKID 355
            +IN++L LSR+++G  +L+   +++ ++    +    +  +       +K   I +   
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYFT 488

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRK 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 548 DLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
 gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 1168

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + +KS FLA+MSHE+RTPL AI+G++E++  +     + E     +  IH +G+HLL +I
Sbjct: 763 SHSKSEFLANMSHEIRTPLTAIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTII 822

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           ++ILDLS+IEAG+  + ++  S+ +++ +    L+ RA  K + +  ++  ++   + +D
Sbjct: 823 SDILDLSKIEAGKMSIEQTDTSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSD 882

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVL 421
              +RQ+++NL+ NA+KFT   G + +TV              I+D G G+ + +   + 
Sbjct: 883 PTRLRQILMNLVGNAIKFTEA-GHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIF 941

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILP 473
            +F Q   ++     G GLGL I + +     G    + S+   G    A LP
Sbjct: 942 QAFSQADTSVTRQYGGTGLGLVICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994


>gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 29/349 (8%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            +   +  +++      V      +++++   A++        L+  +   L+  T +  
Sbjct: 144 TVVGVVRFVTSLEGVNGVVGKIAVILISIGLAAVIISVFAAAILSQTIVKPLNDITRVAE 203

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            + K      + +   D++    +    ++ E  ++ E     K+ F+AS+SHELRTPL 
Sbjct: 204 EMAKGKFTARAPKRYDDEVGRLADTLNFMAQEIMRQEE----LKNEFIASVSHELRTPLT 259

Query: 266 AILGFSEVIELETMGPLNN--------------------ETYKEYIGDIHRSGQHLLNLI 305
           AI G++  +     G                        +   E +  I +  + L  L+
Sbjct: 260 AIKGWTITLLSAIRGTSQAGRSDIRENAGVPDRRVYLNLDELIEGLEIITKESERLSELV 319

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            E+LD SR EAG  +L+   ++L+D +      +  RA+ + +E     +  L  + ADE
Sbjct: 320 EELLDFSRFEAGAIKLNLDKVALVDTLNYIKTQMMPRAKRQAVEFEIYPEEGLPEILADE 379

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++QV++NLL NA KFT  GGRV V    ++     I ++D G GI   ++P V   F 
Sbjct: 380 NRIKQVLINLLDNAFKFTPAGGRVRVKAE-SANDSVRIIVEDTGCGIPPEDLPHVTKKFY 438

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +     KS + G GLGL I   I+  HGG+  I S   +G  V  ILP 
Sbjct: 439 KA----KSKQPGSGLGLAICDEIVRLHGGRMEITSAPGKGTRVEVILPV 483


>gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1631

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +E R+RAE     + AK+ F +++SHE RTPL  +LG  E +         ++  ++ I 
Sbjct: 347 EEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLEELLARPDAASASD--RQLIE 404

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             HR+G  LL L+N +LD SRIEAGR E+      L     +   + +   +   + +  
Sbjct: 405 VTHRNGLRLLKLVNALLDFSRIEAGRIEIHPQPTDLAAFTADLASLFRSAIESAGMTLEV 464

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             +     V  D +   +V+LNLLSNA KFT   G + V++  T+     +S+ D+G GI
Sbjct: 465 DCERLPHLVSIDREMWEKVVLNLLSNAFKFTLT-GTISVSLTMTADGSVEMSVADSGIGI 523

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + E+P +   F +   A   + +G G+GL +   ++ +  G   + S+L  G     +L
Sbjct: 524 PKHELPRLFERFHRVEGATGRSVEGSGIGLALVSELVRSQNGAIHVESELGAGARFTVVL 583

Query: 473 PNTRVLNFIPEDNHEST 489
           P    L+    +   +T
Sbjct: 584 PPAIALDPAASEAARAT 600



 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 81/503 (16%), Positives = 155/503 (30%), Gaps = 67/503 (13%)

Query: 19   TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS-- 76
            T D      P         + +      R     P+       +G  F  +P   +++  
Sbjct: 871  TKDSRYGRNPPHRGMPDGHLQV------RSYLAAPVVSRTGEVLGGLFFGHPTPGVFTTR 924

Query: 77   -----------LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC----- 120
                         T    A      ++ +    K  E        L G++   +      
Sbjct: 925  SERYVEGIAAQAATAIDNARLYQAAQREIAERTKAQEALRELNETLEGRVIEAVADRDRL 984

Query: 121  WTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W +   L+   +   E   +  S T ++   +  L+       +      +V A   +  
Sbjct: 985  WDVSEDLLLVASVDGELQRVSPSWTRVLGHDMHWLALHSYFSLIHADDLALVKANLAELR 1044

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             +   +       L      + +I + L       L     +   +     +   + E  
Sbjct: 1045 RTGAPMR--FENRLRHIDGSWRWIAWTL------SLDPDTRRIHGVGRDVTSDRETQEAL 1096

Query: 240  KRAEEENL--AKSRFLAS----MSHELRTPLNAILGFSEVIELETMGPLNNETY-KEYIG 292
            + AEE      K   + +    ++H+    L  I G  +++  +  G        +  + 
Sbjct: 1097 RHAEEALRVAQKMEAIGNLTGGVAHDFNNLLQVIGGNLQLLSDDVAGDERPAQRVRNALA 1156

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             + R  +    L +++L   R    R  L+   ++L   VR    M++ RA    IEI  
Sbjct: 1157 GVARGAK----LASQLLAFGR----RQPLAPKVVNLGRFVRGLDDMMR-RALGDGIEIET 1207

Query: 353  KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--------------VGWTSG 398
             +   L +   D   +   +LNL  NA       G++ +               V    G
Sbjct: 1208 IVSGGLWNTLVDPFQVENALLNLAINARDAMDGHGKLTIEAGNASLDDAYAKRHVDVEPG 1267

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            +   +++ D G G++      V   F       K   QG GLGL +    +   GG   I
Sbjct: 1268 QYVMVAVTDTGSGMSADVQEHVFEPFF----TTKPEGQGTGLGLSMVYGFVKQSGGHVKI 1323

Query: 459  RSKLREGVEVIAILPNTRVLNFI 481
             S+   G  +   LP  R    +
Sbjct: 1324 YSEPGHGTTIRLYLPRVREEEDL 1346


>gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1135

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 15/337 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L +  L   +L  A++L +  V +++      +   L  +          F   + + + 
Sbjct: 575 LGVLGLIIGLLSLALWLIYSQVSLSVVASPQETGETLYQAFLKAFLVLSLFAGILAWWVV 634

Query: 209 KSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +       Q E D         I           + ++ +E  N AKSR++  +SHELR
Sbjct: 635 LTRESRHVAQQESDRQTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELR 694

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN+ILG+++++  +         +K+ +G IHRSG HLL+LI+ +LD+++IEAG+  L
Sbjct: 695 TPLNSILGYAQILLRDEAMA---PRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNL 751

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
            +S I+  + +++   M+  +A+EK +    +    +   V  DEK +RQ+++NLL NAV
Sbjct: 752 EQSEIAFPEFLQQLRQMIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAV 811

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++T   G + +   +         I D G GI   +I  +   F +G+   +    G+GL
Sbjct: 812 RYTDA-GSITLRASYLRE-TATFEIADTGIGIPAEQIERLFQPFERGNPLRQDN--GLGL 867

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           GL I + + A  GG+  ++S+  +G      L  + V
Sbjct: 868 GLTITRMLTALMGGELSVKSQEGQGTVFQLRLFLSEV 904


>gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1093

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +     +++ AE  N AKS FL++MSHE+RTP+N ILG  +V+   ++     
Sbjct: 697 ITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGTSLTS--- 753

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  I  +G  LL L+N+ILDLS+IEAG   + E +  ++++  +   M++  A 
Sbjct: 754 -DQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDAD 812

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
            K +E+  +I   L   ++     +RQ+++NLL NA+KFT   G V + V      T G 
Sbjct: 813 RKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQ-GHVVLEVASTPSLTDGP 871

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GI   +   +   F Q + +      GVGLGL I + +    GG+  + 
Sbjct: 872 RLRLAVRDTGIGIPADKQAVIFDRFTQINASANRQFGGVGLGLAICKKLAELMGGRIAVE 931

Query: 460 SKLREGVEVIAI 471
           S   +G      
Sbjct: 932 SAPGQGSTFTLS 943


>gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
 gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
          Length = 588

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 939

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 105/413 (25%), Positives = 166/413 (40%), Gaps = 38/413 (9%)

Query: 90  GKKVMNSDIKIGEVYVW--RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
            ++             +              +    ++  +     P  +   +     +
Sbjct: 279 LRRFEREQDPTSTASRFLQARMAARDAPMSAVALARVSAFDGMKKPPWTVAFVRPEAAFL 338

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
                  +   L  A  ++     VA+    +++  +  ++ A     +    T +    
Sbjct: 339 EPIEERTTRDALLLASLIAAIVTAVAVVMAQVLTRPITRLAQAASQLASGKLDTAVEVRS 398

Query: 208 FKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                      N      Q   ++L   +E   +   E +  A+  N AKS FLA+MSHE
Sbjct: 399 HDEMGTLAEAFNQMARQIQGSFEELEHRVEQRTAELKEAKVAADAANKAKSDFLANMSHE 458

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN ILG+++++         +E     I  IHRSG HLL LIN++LDL++IEA   
Sbjct: 459 LRTPLNGILGYAQILRRSRG---LSEQDLRGIDVIHRSGAHLLTLINDVLDLAKIEAQAM 515

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           E   +   L   +R    + ++RA+EK I +    DP L + V ADE+ +RQV++NLL N
Sbjct: 516 EAHANDFHLPSFLRSTAEICRIRAEEKGIALVYTPDPELPTDVVADERRLRQVLINLLGN 575

Query: 379 AVKFTAIGGRVHVTVGWTSGR----------------------GQYISIKDNGPGIAEGE 416
           AVKFT   GRV  T+                                 I+D G GI+  +
Sbjct: 576 AVKFTEK-GRVSFTIKRLGDGPRPPYGSAPDSAANQSAPRRTHRVRFEIEDTGTGISPDQ 634

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           +  +   F Q S   K    G GLGL I+Q IM   G    +RS+  +G    
Sbjct: 635 LDQIFLPFKQASDG-KRRVDGTGLGLAISQRIMKLLGSSIEVRSEPGKGSVFW 686


>gi|83815062|ref|YP_444248.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
 gi|83756456|gb|ABC44569.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
          Length = 1067

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 148/306 (48%), Gaps = 9/306 (2%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKS-NVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +  ++ A M    +      ++  F + N++++        ++ +    +    E ++
Sbjct: 769  GGLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAKE 828

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             AE+ N  KS FLA+MSHE+RTPL +I+GF+E I  E  G   + T   + G I + G+ 
Sbjct: 829  TAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGRR 886

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            LL  ++ +L+LS++EA   EL+ + +++ +   +   + + +A++  I++   +      
Sbjct: 887  LLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPLW 946

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              ADE  +R V+ NL+SNAVK+T  GGRV +       +   + ++D G G+    + T+
Sbjct: 947  ARADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAEDQ-AVLEVEDTGQGMDPAAVSTL 1005

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              +F Q S       +G GLGL + +  +    G   + ++   G   +  LP       
Sbjct: 1006 FEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLPR-----P 1060

Query: 481  IPEDNH 486
             P++  
Sbjct: 1061 APDETD 1066


>gi|331270145|ref|YP_004396637.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
 gi|329126695|gb|AEB76640.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
          Length = 1675

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 6/280 (2%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL---AKSRFLASMS 257
              I   +       +       ++       K   DE  +   E       ++ F A++S
Sbjct: 1365 LSIVELIASQAAISIENAYMYKEINELNGQLKKTVDERTRLLNESIRYEEMRTEFFANIS 1424

Query: 258  HELRTPLNAILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            HELRTPLN I G  ++++L  E+    +     +Y+G + ++   L+ LIN ++D+++I+
Sbjct: 1425 HELRTPLNVIFGGYQMLKLMLESENLQSKPKIDKYMGTMKQNCYRLVRLINNLIDITKID 1484

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
            +G +E++   + +I+ +    + +    + K I +          +  D   + ++ILNL
Sbjct: 1485 SGFFEVNLINVDIINTIESITLSVAQYIESKGINLVFDTFVEEKIIACDVDKIERIILNL 1544

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            LSNA+KFT  GG + VT+ +       IS+KD+G GI + +   +   F Q   ++    
Sbjct: 1545 LSNAIKFTNPGGNIAVTM-YEEKNNIVISVKDDGIGIPDEKQSIIFDRFIQVDKSLSRNR 1603

Query: 436  QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +G G+GL + +SI+  H G+  ++SKL EG E I  LP +
Sbjct: 1604 EGSGIGLSLVKSIVELHKGKIYLKSKLGEGSEFIIKLPCS 1643


>gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 700

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 138/269 (51%), Gaps = 8/269 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +K +S + +   L +++   + + +ET     E N   + F +++SHEL+TPLN ILG
Sbjct: 407 SILKDISSRKQISKLKSDIRDNERVLNET----IEYNKLLTEFFSNISHELKTPLNVILG 462

Query: 270 FSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
             +++       +     E   +Y   + ++   LL L+N ++DLS+ ++G  +L+ S  
Sbjct: 463 AIQILNLPHDFELPQPFEENLNKYHRVMKQNCYRLLRLVNNLIDLSKFDSGFLKLNLSNQ 522

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +++ +V E  + +    + + + I    D     +  D   + ++ILNLLSN++KFT   
Sbjct: 523 NIVSVVEEITLSVADYVESRGLSITFDTDCEEKIIAVDADKIERIILNLLSNSIKFTDKD 582

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + +++    G    IS++D G GI + ++ T+   FGQ    +    +G G+GL + +
Sbjct: 583 GSILISIS-DKGEMVSISVRDTGIGIPKDKLETIFERFGQVDKTLTRNREGSGIGLSLVK 641

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +++  HGG   I S   +G EV   LP  
Sbjct: 642 TLVEMHGGVIKISSMEGKGSEVYIELPVK 670


>gi|228998006|ref|ZP_04157607.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17]
 gi|229005563|ref|ZP_04163273.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4]
 gi|228755663|gb|EEM04998.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4]
 gi|228761739|gb|EEM10684.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 163 IFLAVLLGFIVVLSIVFIAIAARYIVRPIRIFTKATQKIANGEYDIELEEGRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              K ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    +  +  K
Sbjct: 223 TSFKKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---KMTEDERK 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L      +   +++ I ML+ + +EK+I
Sbjct: 276 RYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     +V  DE  + QV  N+ +N++KFT  GG +   V         I+I D+
Sbjct: 336 AVEFDVPS--INVRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEE-SVVIAISDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G+  + S   EG   
Sbjct: 393 GIGMEQEEVERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGKVSVESIRGEGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RIELPK 458


>gi|153955165|ref|YP_001395930.1| two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219855600|ref|YP_002472722.1| hypothetical protein CKR_2257 [Clostridium kluyveri NBRC 12016]
 gi|146348023|gb|EDK34559.1| Two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569324|dbj|BAH07308.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 146/356 (41%), Gaps = 11/356 (3%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W+  +++         LT        I        +++L  A       +        + 
Sbjct: 5   WSFSSVMLIFFSALLSLTCGYYICTFIFSQSGINHSYLLYIAQSFVSVVIFFVGWEIYLE 64

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                         +     +     + K      +   + ++L    EVA  ++   + 
Sbjct: 65  LHWRFTRKKRKFDLSRSQVLSGAIEAINKMASGDFNVFVKTNELDPFNEVADEVNRMAK- 123

Query: 241 RAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             E  +L K R  F++ +SHE+++PL +I GF+ ++     G L+      Y   I    
Sbjct: 124 --ELGSLEKMRQGFISDVSHEIQSPLTSISGFAALLRK---GNLSESQISRYANIIEAES 178

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  L   +L LS +E+  + L+     +   +   ++ML+ +   K+I +   +D ++
Sbjct: 179 KRLSKLSENLLRLSNLESENHNLNLKNYQIDKQIESILLMLEPQWSAKSITLDVSLDKTI 238

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  DE  + QV +NLL NA+KFT+  G + V +  ++       I D G GI+  + P
Sbjct: 239 --VCGDEDLLSQVFINLLHNAIKFTSENGNIGVKLS-SNENEIECKISDTGRGISPQDQP 295

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F +   +   +  G GLGL I + I+  HGG+  + S++ +G E    LP 
Sbjct: 296 RIFERFYKADKSRDRSLGGNGLGLSIVKKIVDLHGGKISLTSEIGKGTEFTIFLPR 351


>gi|160880957|ref|YP_001559925.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160429623|gb|ABX43186.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 453

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 22/302 (7%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV----------AKSLSDE 237
            L       L   + + ++L K  ++ +   AE+   I E             A  + D+
Sbjct: 154 ILLVGAVVLLFICSIVAHYLTKRIIRPIENMAEELSQITEFSEKIPYEELIPFATMIKDQ 213

Query: 238 ------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                   K  E     +  F A++SHEL+TPL AI G+SE+IE     P +      + 
Sbjct: 214 HSSIHNQLKDLEHSEKIRQEFTANVSHELKTPLTAITGYSELIEEGIATPEDT---IRFS 270

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I ++   LL+LIN+I++LS +++   E+ +  + L +I + C+  L++ A+   +E+ 
Sbjct: 271 KEIRKNATRLLHLINDIIELSELDSVDEEIIKEELDLYEIAKNCVDTLKITAKNHEVELK 330

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              +P    ++A++  M ++I NL  NA+++   GG V V V ++      ++++D G G
Sbjct: 331 LIGNP--VFLYANKIMMEELITNLCDNAIRYNKKGGTVKV-VTYSVDDKVVLTVEDTGIG 387

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +     V   F +   +      G GLGL I + I+A H  +  ++S++  G  +   
Sbjct: 388 IPKEHSVRVFERFYRVDKSRSKQTGGTGLGLAIVKHIVAKHDAKITLKSEVMVGTTITIE 447

Query: 472 LP 473
            P
Sbjct: 448 FP 449


>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 976

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA MSHE+RTP+NAILG   ++    +    +ET ++Y   +  SG+ LL+++N+ILD
Sbjct: 465 EFLAVMSHEIRTPMNAILGMIRLLLDSPL----DETQRDYAETVLSSGEVLLSILNDILD 520

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           LSRIEAG+ EL   A  L  +V   I ++  RA+EK++ +       +   +  D   +R
Sbjct: 521 LSRIEAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLR 580

Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQ 426
           QV+LNLLSNA+KFT  G   +H++          I   +KD G GI+      +  +F Q
Sbjct: 581 QVLLNLLSNAIKFTEAGEVSLHLSAEIQPDGIAAIRMEVKDTGIGISPEARSRLFANFAQ 640

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF 480
              +I     G GLGL I Q+++    G+  + S   +G        LP    L  
Sbjct: 641 ADASITRRFGGTGLGLAICQNLVRLMNGEIGVDSVPGQGSTFWFVVRLPVAVALEE 696


>gi|90022553|ref|YP_528380.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952153|gb|ABD82168.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 614

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 9/335 (2%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
                 + L    ++ F    +  L      +    +++                 +   
Sbjct: 284 YLTIAGVILVFLVVAAFYFRISAPLG----RLTSVFESLAEGTRSVHIPDINRKDEIGLL 339

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                     N +  +   + + ++ E  +      E + RAE     K+ FLA+MSHEL
Sbjct: 340 ARAANVFRSKNDQTEALLVKTEQMVKEQTLLNEYLQEEKLRAERALSVKTDFLANMSHEL 399

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLNAI+GF+  +  +     N       +  I R+G+HLL +IN+ILDLS+IEA + +
Sbjct: 400 RTPLNAIIGFTVRLLKKKDQLQN--QQVNAMEVIERNGRHLLAMINDILDLSKIEANKLD 457

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L  +++ L  +  + +  + L A+EK++ I  +    +  +  D   + Q++LNLLSNA+
Sbjct: 458 LHIASVELPQLCADIMGQISLAAEEKSLRIDYEY-VEVPIIQTDSVRLSQILLNLLSNAI 516

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVG 439
           K+T  GG V V +   S     ++I D G GI+E +   + + F Q     K     G G
Sbjct: 517 KYTESGG-VSVKIARNSIDSITLTIADTGVGISEADQKKLFSRFEQFDDRTKFQVGKGTG 575

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           LGL I  ++      Q  + S L  G     I+P 
Sbjct: 576 LGLAIVANLCKILSIQVSVESTLGLGSCFTLIIPL 610


>gi|302325536|gb|ADL24737.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1405

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 10/259 (3%)

Query: 221  KDDLIAELEVAK-SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +D++   E+A+ +  ++  + A+  + AK+ FL +MSH++RTP+NAI+G++E+    T+
Sbjct: 868  NNDVVYRKEMAQQAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTELA---TI 924

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               N E  + ++G I  S  HLL+LIN++LD+SRIE+G+  L+E    L +I+     ++
Sbjct: 925  HIGNKEQVRNFLGKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIV 984

Query: 340  QLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            Q     KN++ F          V  D   + QV+LN++SNA+K+T  GG +  +V     
Sbjct: 985  QADINAKNLQFFANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKES 1044

Query: 399  RG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       IKD+G G++E  +P +  +F + + +  S  QG GLG+ I ++I+    
Sbjct: 1045 DEDGYGVYEFRIKDSGIGMSEDFLPKIYDAFTRVNSSTVSGIQGTGLGMAITKNIVDMMD 1104

Query: 454  GQFLIRSKLREGVEVIAIL 472
            G   I+SK+ EG +V+   
Sbjct: 1105 GSIDIKSKVDEGTDVVLNF 1123


>gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126]
          Length = 1023

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L  ++        E  + A + +  KS F++++SHE+RTPLN ++G   +++ + + 
Sbjct: 486 NLKLEEKVVSRTKELVEATQEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKCQPL- 544

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              NE  ++ +  +  S  +L  LIN++LDLS+IEAG+ +++      + ++     +  
Sbjct: 545 ---NEKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFA 601

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-- 397
           ++A  K +++           + +D   + Q++ NLL+NA+KFT   G + +    +   
Sbjct: 602 VKAASKGLQLLVDTTGLPPVEINSDPHRINQILSNLLNNAIKFTEE-GHIKLQASLSDVD 660

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +  + S+ D G GIA+   P + T+F Q   ++ +   G GLGL I + +    GG 
Sbjct: 661 AGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGGD 720

Query: 456 FLIRSKLREGVEVI--AILP 473
               S++  G        LP
Sbjct: 721 ITFNSEVDIGSTFSFFVTLP 740


>gi|166031591|ref|ZP_02234420.1| hypothetical protein DORFOR_01291 [Dorea formicigenerans ATCC
           27755]
 gi|166028568|gb|EDR47325.1| hypothetical protein DORFOR_01291 [Dorea formicigenerans ATCC
           27755]
          Length = 468

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 134/310 (43%), Gaps = 7/310 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V      +  AL T   +   +  I++  +    L     +   +   N   L    E +
Sbjct: 166 VLRVSKTMNTALHTAISILPIMGLIAVVALAFAYLLSRQQVAKLIRPINELDLEEPLENE 225

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                  + +S+  + +++    N+ K  F A++SHEL+TPL +I G++E+++   + P 
Sbjct: 226 VYEELTPLLESIDKQNKEKEAIANMRK-EFSANVSHELKTPLTSISGYAEIMKSGIVKPE 284

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +      +   I+   + L+ L+ +I+ LS ++ G+ EL +  I L ++ RE I  L  +
Sbjct: 285 DMP---RFSEKIYNEARRLITLVEDIIKLSHLDEGKVELEKEDIDLYELTREIISRLAPQ 341

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K + +    +          + + +++ N+  NA+K+   GG + + VG T    + 
Sbjct: 342 TSAKKVHMELTGES--VIYNGVRQILDEMVYNICENAIKYNKEGGEIRIWVGNTLNGKKI 399

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GI + +   +   F +   +      G GLGL I +     H  +  + S+L
Sbjct: 400 I-VTDTGIGIPKEQQERIFERFYRVDKSHSKEIGGTGLGLSIVKHGAILHNAKIHVDSEL 458

Query: 463 REGVEVIAIL 472
            +G  +    
Sbjct: 459 GKGTRMELTF 468


>gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1055

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 19/280 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    E +  A+  N AKS FLA+MSHELRTPLN ILG++++++ +    L  
Sbjct: 555 ITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHELRTPLNGILGYAQILQRD--SSLTP 612

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E I  I++ G HLL LIN+ILDLS+IEA + EL  S+   +  ++    + +++A+
Sbjct: 613 KQLAE-INIIYKCGSHLLTLINDILDLSKIEARKMELYPSSFYFLGFLQVVSEICRIKAE 671

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           +K I      D +L  V  ADEK +RQV++NLL NAVKFT   G V   V          
Sbjct: 672 QKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNAVKFTDA-GAVTFKVAVVDLISVES 730

Query: 399 --------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                         I+D G G+   ++  +   F Q         +G GLGL I+  I+ 
Sbjct: 731 TTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQVGDTR-RMVEGTGLGLAISLKIIE 789

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G    + SK + G +    L              E TQ
Sbjct: 790 MMGSSIKVASKSQAGSQFWFDLALPSSGEAETLLTTEPTQ 829


>gi|221134530|ref|ZP_03560835.1| sensory transduction histidine kinase [Glaciecola sp. HTCC2999]
          Length = 613

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 10/268 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +  + +     +  + +++ +   A+         A++ + +++RFLA+MSHE+RTP+N
Sbjct: 212 RILGTCIDTTESEISQKEIVNQATKAQENM----IIAQDASASRTRFLANMSHEIRTPMN 267

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G  +++E   +   +       +     S  HLL +IN+ILDLS+I+A +  +    
Sbjct: 268 AIMGALQILESYDLDTGS----LNLVNMAIDSSDHLLKIINDILDLSKIDAHQMAIESIG 323

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I+L  ++   I    L   +                  D     Q+I NL+SNA+KFT  
Sbjct: 324 INLQQLLTSAIDKFMLSLDKDIEINLTIPPEFNPYRVGDPVRFNQIINNLISNAIKFTEK 383

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V +     +     +S+KD G GI + ++  + + F Q   +I  +  G GLGL I 
Sbjct: 384 -GSVDI-CLLGNDESIELSVKDTGIGIPKHQLQNIFSPFKQADDSITRSYGGTGLGLAIC 441

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473
            S+     G+  + S+   G E     P
Sbjct: 442 TSLTELMSGKLKVTSEEGVGTEFTFQAP 469


>gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
 gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
          Length = 1937

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 19/386 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L ++   +
Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +      A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++     G L +   +E+  
Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    ++L DI        +  A+E+++    
Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFVI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------RGQYIS 404
            ++DP L   +  D K ++QV+ NLLSNA KFT   G V + +G   G       +   +S
Sbjct: 1351 EVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLKIGSAEGSPLRAGTQWIAMS 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIAE +   +  +F Q          G GLGL I++ I    GG+ ++ S++  
Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGT 1469

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP       +     E++ 
Sbjct: 1470 GSTFTLFLPFEPPAQALTGRAAEASD 1495


>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 881

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 11/321 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
               + F   ++  ST   +   +  I  A    T     +  T  +   N +      +
Sbjct: 286 AVFAMLFVLFMLGTSTWLRVYNKLNAILNALQSLTKEDEQSQQTRVIPDGNDEFTVFAKQ 345

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +I E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    + 
Sbjct: 346 INQIIDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELS 405

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  KE +GDI  S Q LL L+N+ILDLS+IE+G   +S     + + V + + + Q
Sbjct: 406 S----QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQ 461

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
            +A  KNIE+   +   +   V AD+  ++QV+ NL+ NA+KFT   G +   V + +  
Sbjct: 462 SKATSKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKE-GYISTFVNYQADE 520

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G GI + ++ T+   F Q   +I     G GLGL I + ++A  GG
Sbjct: 521 HDHQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +    S    G      +P  
Sbjct: 581 ELTATSTKGLGSCFSFTIPVE 601


>gi|291534447|emb|CBL07559.1| EDD domain protein, DegV family [Roseburia intestinalis M50/1]
          Length = 891

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 180/455 (39%), Gaps = 36/455 (7%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI-----FPMWSLITLAVYAANLSLGK 91
           +I   V    ++   + L   +   +G  +T                 L +       GK
Sbjct: 12  LIRKDVSIHAQLFRFMSLLGTIAMALGGVYTLAEGMEIKNVAALFAGALFMGML-FWAGK 70

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           K    D+            ++     G+    L +    +   +         L   L  
Sbjct: 71  KFQQYDLCS---------FILMSGLNGI---FLPVTFLRSGGLKS-----GMPLWFVLGF 113

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +L   +   ++       ++A +                 +    S        +  + 
Sbjct: 114 ISLFFLLRGKSLVAGTVITIIADAYCFYT-----AYVHPERITYMESESVVYVDIIVSAV 168

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + I    A     I   E  +  +++ +         +SRFLA+MSHE+RTP+N I+G +
Sbjct: 169 ITIFMTCAFMFIQITLSEYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLN 228

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E+   E      ++   E   +I  + + LL+LIN+ILDLS+IEAG+ E+  +     ++
Sbjct: 229 EMTLRE---ENLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGEL 285

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389
             E +    +RA EKN+E    +   L   ++ DE  ++QV+ N+LSNA+K+T  G   +
Sbjct: 286 FSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTL 345

Query: 390 HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V    T      +  ++ D G GI + ++  +  SF + +       +G GLGL I   
Sbjct: 346 FVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTGLGLSICSQ 405

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           ++   GGQ  + S  ++G      +P  +++N  P
Sbjct: 406 LVNLMGGQITVDSIYQKGSTFTITIP-QKIVNATP 439


>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter turicensis z3032]
 gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
          Length = 703

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 130/264 (49%), Gaps = 8/264 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 206 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVD----R 261

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +H S   LL +I++ILD S+IE+ + ++     S  +++       Q     K + 
Sbjct: 262 LVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLVVRKQLG 321

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + VG T G      ++D 
Sbjct: 322 LYCFIEPDVPMTLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVG-TQGDYLCFRVRDT 379

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + ++   G + 
Sbjct: 380 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTETGMGSQF 439

Query: 469 IAILPNTRVLNFIPEDNHESTQYK 492
              +P  +     P+ N +   +K
Sbjct: 440 TIRIPLWQA-QLPPKANVDGLSHK 462


>gi|118443927|ref|YP_878728.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134383|gb|ABK61427.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 1666

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 201  TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMS 257
              I   +       +      +++    +  K+  DE  K   E       ++ F A++S
Sbjct: 1356 LSIVELIASQAAISIENAFMYEEINTLNKELKNTVDERTKLLNESIKYEEMRTEFFANIS 1415

Query: 258  HELRTPLNAI-LGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            HELRTPLN I  G+ +++   LE     N E   +Y+G + ++   L+ LIN ++D+++I
Sbjct: 1416 HELRTPLNVIFSGY-QMLNVLLENEDLENKEKVDKYMGTVKQNCYRLVRLINNLIDITKI 1474

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
            ++G ++L+   +++++IV    + +    + K I +         ++  D   + ++ILN
Sbjct: 1475 DSGFFKLNMINVNIVNIVETITLSVAQYIESKGINLIFDTFIEEKTMACDVDKIERIILN 1534

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            LLSNAVKFT  GG + VT+         IS+KD+G GI + +   +   F Q   ++   
Sbjct: 1535 LLSNAVKFTNKGGNIFVTMK-EEDNNIVISVKDDGIGIPKEKQSIIFDRFIQVDKSLSRN 1593

Query: 435  EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +G G+GL + +SI+  H G   ++SKL  G E I  LP  
Sbjct: 1594 REGSGIGLALVKSIVELHDGNITLKSKLGRGSEFIIKLPCK 1634


>gi|150017295|ref|YP_001309549.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903760|gb|ABR34593.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 625

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 143/284 (50%), Gaps = 12/284 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S ++ +S   + ++L  +++    L D+    AE  +  K+ F A++SHE RTPLN +L 
Sbjct: 330 SVIRDISEHKKSENLRLKIQEQSRLLDKA---AE-YDKLKTEFFANLSHEFRTPLNVMLS 385

Query: 270 FSEVIE---LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
             +++           + +   +Y   + ++   LL L+N ++D+++I+A  ++LS    
Sbjct: 386 TLQLLNLIGANKTNTDSKDKISKYYNIMKQNCYRLLRLVNNLIDITKIDAEYFKLSLKNE 445

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++I  + +  + +   A+ K ++I    +     +  D   + +++LNLLSNA+KFT+ G
Sbjct: 446 NIISTIEDITLSVTDYAKNKGLDIIFDTNVEEKLMACDADKIERIMLNLLSNAIKFTSSG 505

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + V +         +S++D G GI + +  ++   F Q   ++    +G G+GL + +
Sbjct: 506 GSIFVNI-LDKDSSIIVSVRDTGVGIPKDKQLSIFKRFVQVDKSLSRKREGSGIGLSLVK 564

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S++  H G   I S+  +G E I  LP       +PE  + ++ 
Sbjct: 565 SLVELHNGTIKINSEYGKGSEFIIELPVK----VLPESENVTSD 604


>gi|261212489|ref|ZP_05926774.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
 gi|260838420|gb|EEX65076.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
          Length = 856

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256
           +   +++ N+  +  + +   +I + +       A+  S   R+ AEE    ++ FLA M
Sbjct: 428 VDGRVYRWNLSPIMVEGQIISVITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN +LG S++++  ++     +  +E++  +  SG+HLL ++N+ILD SR+E 
Sbjct: 488 SHELRTPLNGVLGVSQLLKRTSL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNL 375
           G++ + ++   L ++V     + +    +K +++    + +  + V +D+  + Q++ NL
Sbjct: 544 GKFRIQKNEFPLQELVCAIDRIYRPLCNDKGLQLIVNSNITRSTMVRSDQIRINQILFNL 603

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT   G V V +    G       I + D G GI E ++  +   F Q      
Sbjct: 604 LNNAIKFTHQ-GSVRVELELMVGDPLAQLVIQVIDTGIGIREQDLAVIFEPFMQAESTTT 662

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
               G GLGL I  S++    GQ  + S+   G      LP   V    P  
Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGVGTRFEIQLPIELVEVVEPAQ 714


>gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus
            sp. PCC 7002]
 gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain
            protein) [Synechococcus sp. PCC 7002]
          Length = 1427

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 4/257 (1%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I +   AK   ++   +  E N  K+RF+ + SHE RTPL  ILG ++++       L  
Sbjct: 1172 ITQQRRAKRELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQIL-SAYHDHLPE 1230

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+ +I  S   L  LI+++L +SR+EAG+      A+ ++ + R+ I  L++   
Sbjct: 1231 ARRSQYLNNIEDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRDLIAELKIGIG 1290

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            +++    +      + +  D   ++ ++ NLL NA K++A G  V V +G ++     ++
Sbjct: 1291 KQHHFNLETTGAIAAPLALDPNLLQHILNNLLGNACKYSAPGTTVTVQLGSSAE-ALTLT 1349

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            I D G GI   + P +  SF + S        G GLGL I +  +  HGGQ  + S+L +
Sbjct: 1350 IIDQGVGIPPEDQPHIFESFYRASN--TQNIPGTGLGLNIVKEYVQLHGGQIELTSQLSK 1407

Query: 465  GVEVIAILPNTRVLNFI 481
            G +    +P T      
Sbjct: 1408 GSQFTVTIPLTEDSPET 1424


>gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 677

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 136/280 (48%), Gaps = 12/280 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           F  I   +        + +    +L   +E   S  +   + AE  N AKS+F+A+MSHE
Sbjct: 135 FLGIGKDVTAQQETEAALRCLNANLEQLVEERTSQLNTAIETAEIANQAKSKFIANMSHE 194

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            RTPLNAI+GFS+++  +          +  +  I+RSG+HLL+L+NE++ LS+IE G  
Sbjct: 195 FRTPLNAIMGFSQLLLRDR---RITPDQQSRLDVIYRSGEHLLSLVNEVITLSKIEDGVL 251

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
                 ++L  +      +  L+A  K+I++  +I P +   +  D + +RQ+++NLL N
Sbjct: 252 TYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIRTDAQKLRQILINLLGN 311

Query: 379 AVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           A+K+T   G V   V W              SI+D GPGI +  +P +   F Q     +
Sbjct: 312 ALKYTKR-GSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLPKLFEHFVQ-DPLTR 369

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G+GLGL I Q  +   GG   I S    G  V   +
Sbjct: 370 DKFGGIGLGLCICQRFVHLMGGDISIESTEDHGTIVDFYI 409


>gi|228906399|ref|ZP_04070282.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
 gi|228853215|gb|EEM97989.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 195 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 251

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 252 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 310

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 311 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 369

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 370 DKARTRSTGGTGLGLSIVKEIVELHGGNITVTSEVNHGSCFIISLP 415


>gi|171317076|ref|ZP_02906280.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097777|gb|EDT42601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1093

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 139/308 (45%), Gaps = 24/308 (7%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            +     +  +++       +  F    Y L K               I   + A+    
Sbjct: 521 TSWDRQRLRILTIVLGTLLMVVLFLVWNYLLRKE--------------IRLRKRAEGDLA 566

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              + AE+ + AKS FLA+MSHE+RTP+NA+LG  E+++         E+    I   + 
Sbjct: 567 AAIEVAEDASRAKSTFLATMSHEIRTPMNAVLGVLELLKQSRG---TIESQSASIDAAYD 623

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355
           S   LL+LI +ILDLS+IE+G+ EL+   I    +VR    + +  A+++++     ID 
Sbjct: 624 SAHALLSLIEDILDLSKIESGKLELAPEPIDCDALVRSVANVFEGLARQRHLLFSVSIDN 683

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGI 412
           P   SV  D   +RQ++ NLLSNAVKFT  GG      +           + +KD G GI
Sbjct: 684 PRRLSVTIDPIRLRQILSNLLSNAVKFTHTGGVSLEAMLRADAQDQVHIELRVKDTGIGI 743

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A GE   +   F Q    I +   G GLGL I + ++   GG   ++S    G  V   L
Sbjct: 744 AAGEQEKLFQPFVQADRTIGAKFGGSGLGLAICRRLVELMGGALTLKSTPGVGTTVEVSL 803

Query: 473 ---PNTRV 477
              P   V
Sbjct: 804 SAPPAALV 811


>gi|160939015|ref|ZP_02086366.1| hypothetical protein CLOBOL_03909 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437978|gb|EDP15738.1| hypothetical protein CLOBOL_03909 [Clostridium bolteae ATCC
           BAA-613]
          Length = 618

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 18/295 (6%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + Y  +    KI+         I E +  K L  +    A+  N AKS FL+ MSH++RT
Sbjct: 61  LRYSYYNRQRKIILLTRSDITEIREEKRQKELLQDALNAAQVANQAKSTFLSRMSHDIRT 120

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+NAI+G + +         + +   + +G I  S + LL+LINE+LD+S+IE+GR  LS
Sbjct: 121 PMNAIIGLTAIAAS---CADDPDRVIDCLGKITSSSKLLLSLINEVLDMSKIESGRIVLS 177

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVK 381
           E    L  + ++ I M+Q   + +   +   I+     +V  D + ++Q+I NLLSNA+K
Sbjct: 178 EEDFLLDSLFKDVISMIQPDLKRRGHTLNIHIETLEHEAVCGDMQRLQQIINNLLSNAIK 237

Query: 382 FTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +T  GG + + +  T    Q      +  +DNG GI+   I  V   F +       + Q
Sbjct: 238 YTPHGGTITLELSETRSPQQGYSTYRLVCEDNGVGISPEFIERVFEPFERAEDERIRSVQ 297

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI---------LPNTRVLNFIP 482
           G GLG+ I ++I     G   + S    G               LP++ VL  +P
Sbjct: 298 GTGLGMAITRNIARMMDGDIWVESTPGRGSRFTVTFNLRLRNQILPDSSVLTELP 352


>gi|116513325|ref|YP_812231.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092640|gb|ABJ57793.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 620

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 376 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 433

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 434 LLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 493

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M + I N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 494 LWVEIDTDQMMRAIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 552

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 553 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 612

Query: 479 NF 480
             
Sbjct: 613 EE 614


>gi|330448474|ref|ZP_08312122.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492665|dbj|GAA06619.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 576

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 7/238 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +KRAEE   +   FLA ++HELRTPLN +LG +E++   ++         + +  ++ S
Sbjct: 203 AKKRAEESEQSTRDFLAMINHELRTPLNGLLGSAELLHDTSLDTH----QLKLLTTLNHS 258

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L  +IN++LD S+I AG  EL E       +  +   +   +A EK ++      P 
Sbjct: 259 GELLRAIINDLLDYSKINAGMLELIEKPFDSHLLATKLEDIFTHKANEKRLDFNIYYAPD 318

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L + +  DE  ++Q+ +NL+SNA+KFT+  G VH  + W   +    S++D+G GI + +
Sbjct: 319 LPAALIGDEDRIKQIFVNLISNAIKFTSD-GFVHAKLWW-EDQKLQFSVRDSGCGIDQAD 376

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +   F Q  I  K + +G GLGL I + +    GG   + S L  G      LP 
Sbjct: 377 QHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFQISLPL 434


>gi|257094698|ref|YP_003168339.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047222|gb|ACV36410.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 918

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 143/312 (45%), Gaps = 4/312 (1%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
                V  A S  A          +   +A           H+     ++ +   E +  
Sbjct: 600 ADAQLVQFAESLLAGAIGSASARVMVASVAKEEPLSIDEVMHILDEASQLRTYSRELERK 659

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             EL  A     E  +R +E +  K   ++S++HELRTPL +I  FSE++  +    L +
Sbjct: 660 SRELTAATLELQEANERLQELDRVKDDIMSSVTHELRTPLTSIRAFSELLRDDPKMHLAD 719

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + ++G I    + L  LIN+ LDL++IE+GR + +   + L ++V + +       +
Sbjct: 720 --RERFLGLIVSEAERLSRLINQTLDLAKIESGRADWNGCELDLKEVVEQSLAATSQLFR 777

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYI 403
           EK+  +   +  +L  + AD   + QV+LNLLSNA KF   G GRV V +   +     +
Sbjct: 778 EKDAHVDLDLPDNLPLILADRDRLIQVMLNLLSNAAKFLVQGAGRVSVKLRVLAD-ALEV 836

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ DNGPGI   +   +   F Q    + +   G GLGLPI++ I+ + GG+  + S   
Sbjct: 837 SVSDNGPGIRPEDQELIFEKFRQVGDTMTAKPAGTGLGLPISRRIVEHFGGRLWVESVPG 896

Query: 464 EGVEVIAILPNT 475
           EG      LP  
Sbjct: 897 EGATFRFTLPFA 908


>gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 497

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 151/338 (44%), Gaps = 15/338 (4%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            +L      +  +  LP     +    + AL    + +   +      M   +       
Sbjct: 169 MVLRLAVPYSGISEYLPMLFPAALVSFLAALICSLVTTQRFVSSVTRPMRDISGKML--- 225

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS---RFLASMSHEL 260
              +     ++   + +  ++    E   ++S   ++   +    K     F ++ SHEL
Sbjct: 226 --QVKGDYTELHFDRYQYPEINVIAETITNMSQNVKEYLSQIEKEKQIRQEFFSNASHEL 283

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYK-EYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +TP+ +I G++E++E    G + +E+ K ++   I +   ++  LIN+IL +S++EA   
Sbjct: 284 KTPITSIQGYAELLES---GLIQDESMKMDFARRIKKEAVNMTGLINDILMISKLEAKDA 340

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           E+  + + +  ++ E +  L+ +A    + +     P    + A+ + M++++ NLLSNA
Sbjct: 341 EVVVTDVRISVLLEEIMDSLKPQAASSQVFLHADCQP--LCIRANVQQMKELLTNLLSNA 398

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VK+   GG+V + +    G    I ++DNG GI E  +  +   F +        + G G
Sbjct: 399 VKYNHPGGQVWINI-REQGGNMVIRVRDNGMGIPEESLDRIFERFYRVDKGRSRKQGGTG 457

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           LGL I + I+  + G   + SKL +G E +  +P  + 
Sbjct: 458 LGLSIVKHIVNFYQGTIHVTSKLEQGTEFVVTIPMDQA 495


>gi|291519211|emb|CBK74432.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Hpt domain./Response
           regulator receiver domain [Butyrivibrio fibrisolvens
           16/4]
          Length = 857

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 136/256 (53%), Gaps = 11/256 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  D I   E  +   +   +  ++ + AKS FL++MSHE+RTP+NAI+G +E+I  E  
Sbjct: 236 EMADYIERFEKQQK-LETELEITKQASEAKSSFLSNMSHEIRTPINAIIGMNEMIIREC- 293

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +E   EY  +   +G  LL+L+N+ILD S+IEAG+ E+      L  +V + + ++
Sbjct: 294 ---TDEQILEYANNAKSAGNSLLSLVNDILDFSKIEAGKMEILPVQYDLASMVNDLLNLI 350

Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             RA+EK ++    +D S+ S+   DE  ++QV+ NLL+NAVK+T   G V ++V +   
Sbjct: 351 AARAEEKGLDFEINVDSSIPSILIGDEIRLKQVVTNLLTNAVKYTER-GTVALSVSFEKN 409

Query: 399 RG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +  + D G GI E +I  + + F +         +G GLG+ I + ++A    
Sbjct: 410 DENSITLHFEVSDTGIGIKESDIAKLYSPFERIEEIRNRTIEGTGLGMSIVRKLLALMDT 469

Query: 455 QFLIRSKLREGVEVIA 470
           + ++ S+  +G     
Sbjct: 470 KLIVESEYGKGSSFRF 485


>gi|295688200|ref|YP_003591893.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430103|gb|ADG09275.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 638

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 8/249 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHE+RTP+N +LG   +++ E +        +  + +    G+ L  L+N+I
Sbjct: 266 KSQFLANMSHEIRTPMNGVLGVLHLLKKERLSADG----RRLLNEALDCGEMLSQLLNDI 321

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           +D+SRIEAG+ +L+       +++R    ML+ +A+ K + +  +    L     D   +
Sbjct: 322 IDVSRIEAGKLDLAAEPTEPAELLRGVAEMLRPQAEAKGLSLRVETAGDLGWAITDPLRL 381

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQ 426
           RQ + NLL NAVKFT  GG V    G   G    +   I D G GIA      +   F Q
Sbjct: 382 RQALFNLLGNAVKFTLAGGVVARLTGRREGDRLRLRYEIADTGVGIAPEAAAKLFERFRQ 441

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G  +      G GLGL I + +    GG     S L +G      +     +   P + H
Sbjct: 442 GDGSTTRRFGGSGLGLAICRRLAELMGGDVGFESVLGKGSTFWIEIEAE--VGAPPVETH 499

Query: 487 ESTQYKCYA 495
           E      +A
Sbjct: 500 EDDDTPLFA 508


>gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 647

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLA+MSHE+RTP+N+I+G ++++    +    +   KEY+  I  S + LL +IN+IL
Sbjct: 179 TEFLANMSHEIRTPMNSIIGMTQLLAYTEL----SAEQKEYVDGILTSSEGLLAIINDIL 234

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           DLS++EAG+ EL     SL   + E I      A EK +++   I   +  ++  D   +
Sbjct: 235 DLSKVEAGKIELESRNFSLRQNINEIIRTQTAAAHEKGLQLKVFIPEEIPDALVGDRLRL 294

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFG 425
           +QV+LN + NA+KFTA G   V V +            SI D G GIA   +  +   F 
Sbjct: 295 KQVLLNTIGNAIKFTASGSIAVTVALAEKQEDAARLTFSIADTGIGIAPESLDRIFAPFA 354

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           Q   +      G GLGL I+  ++   GG+    S+   G      +P  
Sbjct: 355 QEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAESRKNTGSTFHFEIPFR 404


>gi|156744216|ref|YP_001434345.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156235544|gb|ABU60327.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 579

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 9/344 (2%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLA 194
            +    + +I L++S      +      +       LS Q  +      + LA    ++ 
Sbjct: 195 ILTVFVSAVIGLTLSGNIARRIRTLRDATIAVSGGDLSRQVSLRGGDELVLLANNFNLMV 254

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +L     +           L  Q    + + + + A+  +   +  AE  + AKS FLA
Sbjct: 255 ASLRQQRMLLEERNAELSASLETQQRLMEDLVQRKQAEEAAHRAQAAAEAASHAKSMFLA 314

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHELRTPLNAILG+ +++ LE      +E   + +  I  +G+HLL +I+ ILD S+I
Sbjct: 315 TMSHELRTPLNAILGYVQLLHLEAQIHGRSEMLPD-LERIRSAGKHLLTIISNILDFSKI 373

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E GR  +     ++  I  E I +++  A+ +N  +     P +  + +D   +RQ++ N
Sbjct: 374 EQGRMNVEIDTFNVSVIAHEMISIIEPLARNRNNTLTLTCPPDIGMMQSDAGKVRQILFN 433

Query: 375 LLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           LLSNAVKFT   G V +T+       G     S+ D G G++  ++  +   F Q   + 
Sbjct: 434 LLSNAVKFT-DNGTVALTIERECCSDGDWVRFSVADTGIGMSPEQLTRLFQPFTQVHQSH 492

Query: 432 KS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            S A +G GLGL ++Q +    GG   + S++  G      LP 
Sbjct: 493 SSHAHRGTGLGLALSQQLCRLLGGDISVTSEVGRGSVFTVRLPA 536


>gi|75812473|ref|YP_320092.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75705229|gb|ABA24903.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 519

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 6/253 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L   + +A   + ETR  AE  N  K  FL ++SHELRTPLNAILG+++++  +     
Sbjct: 111 RLATAVRLAIEQA-ETRANAEAANRLKDEFLVTLSHELRTPLNAILGWAQILLKQ---TP 166

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N+ T K  +  I R+ +    ++ +ILD+S I  G++ L  + + L+ I+   I  +   
Sbjct: 167 NSSTTKRALETIVRNAKTQARIVEDILDISGIITGKFSLQVAPVDLVAIINTVIASVNPA 226

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K I +  K+ P    V  DE  ++Q+  NLL NAVKFT   G + + V   +     
Sbjct: 227 IATKAIHLEAKLAPLDGQVLGDETRLQQIFGNLLLNAVKFTPEHGYILLQVKQVNID-AV 285

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461
           I++KD G GI    +P V   F Q   +   + +G+GLGL IA+ +   HGG     S  
Sbjct: 286 ITVKDTGIGINAEFLPFVFDRFSQADSSTTRSYRGLGLGLAIARQLTELHGGTIEATSLG 345

Query: 462 LREGVEVIAILPN 474
              G      LP 
Sbjct: 346 EGYGATFTVKLPL 358


>gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15]
 gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980]
 gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15]
 gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980]
          Length = 611

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VILSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|116668684|ref|YP_829617.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
           FB24]
 gi|116608793|gb|ABK01517.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
           FB24]
          Length = 566

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 5/276 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                ++ + ++   A             S   +  K+  + + AK+ FLA+++HELRTP
Sbjct: 290 PRVWTRTEISLIQHVAGNVAYGLIQSHLMSAQQQVVKQLRQLDQAKTDFLATVNHELRTP 349

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L +I  + ++I+    GP+        +  I R+ + L  LI ++L +SR +     L  
Sbjct: 350 LTSISAYLDMIQDGVGGPV-PPEVSRMLDIIVRNSERLRRLIEDMLTVSRQDYDGANLHL 408

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L   ++   + L+  A+  ++ I  ++     ++ ADE  + QV  NL+SNA+KFT
Sbjct: 409 GPVQLGHTLQIVTVALRPLAELGDVSISLELCDGDPAIIADEVQLEQVFTNLVSNAIKFT 468

Query: 384 AIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             GGR+ V+  + +      G  + ++D G GI E EIP + T F + S A  +A  G G
Sbjct: 469 PRGGRIVVSCRFQAMTDGEPGVNVHVRDTGVGIPEEEIPHLFTRFFRASNATSTAVPGSG 528

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL IA  I+ +H G   + S+L  G  +   LP +
Sbjct: 529 LGLAIAHDIVKSHRGYLAVSSELGAGTTITVQLPVS 564


>gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
 gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
          Length = 600

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 186/450 (41%), Gaps = 18/450 (4%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
               +    D+        +L  +   +     L   +       P+  +   + L    
Sbjct: 123 APVAAASTQDQPKRLAEGAALALIGACVAALTQLSG-LAPAAPTGPLAFVLGFLALVTTG 181

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L+ G  +        +       + +  +  GL    + +        +         
Sbjct: 182 LGLAAGLLIGRRRQGARDDRYASEIIGLETLLDGLPHLAIAV------RGQGQVTAVRGA 235

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
               ++ + L N  L  A        + A   QA             +    +       
Sbjct: 236 APPGVTRADLVNRGLTGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVAL---- 291

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                 +    +        I      +   D+ R  AE     ++RFLA+MSHELRTPL
Sbjct: 292 ----DMHRVAPNQLVGVLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPL 347

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++     GPL++  Y EY   IH SG HLL+LIN++LD+S+IEA R+EL   
Sbjct: 348 NAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRG 406

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                + V+  + +L++++    +++   + P    V AD + ++Q++LNL+SNA+KFT 
Sbjct: 407 VFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTP 466

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V VT          I + D G GI+  ++  +   + Q   A + A +G GLGL +
Sbjct: 467 RGGQVTVTAHGY-DGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRA-RGTGLGLSL 524

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++    HGG+ +I S+L  G  V   LP 
Sbjct: 525 VRAFAQLHGGEMVIESRLGAGTTVSVRLPV 554


>gi|88704190|ref|ZP_01101904.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Congregibacter litoralis KT71]
 gi|88701241|gb|EAQ98346.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Congregibacter litoralis KT71]
          Length = 1476

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 16/252 (6%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA+MSHE+RTP++ ++G ++++    +    +   + Y      SG+ LL +IN I
Sbjct: 851  KSEFLAAMSHEIRTPMHGMIGMTDLLIQSGL----SAQQRSYAETARDSGESLLAIINSI 906

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
            LD S++EA + EL  S   +I ++     +L   A     E++          V+ D   
Sbjct: 907  LDYSKMEANKLELDFSEFDVISLIDNVCTLLIQSASSHGTEVYIVWGDCQHRKVYGDVGK 966

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQY--ISIKDNGPGIAEGEIPT 419
            +RQ++LNL+ NA+KFT  GG+V +    T+             ++++DNG GIA+ ++ +
Sbjct: 967  IRQILLNLIGNAIKFT-KGGKVVIRCSTTAVSEDSSENTVRYQVAVEDNGIGIAKEKLDS 1025

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477
            V   F Q   +      G GLGL I++ + A   G   + S+L  G        L     
Sbjct: 1026 VFEVFTQADTSTTRQYGGTGLGLSISKELAALMDGSLSVTSELNVGSTFTFETKLRAIDA 1085

Query: 478  LNFIPEDNHEST 489
                P+   E T
Sbjct: 1086 EPERPQRGEEQT 1097


>gi|187933765|ref|YP_001886045.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721918|gb|ACD23139.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 664

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 235 SDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIEL---ETMGPLNNETYK 288
                KR E        K++F A++SHE +TPLN IL  ++++E    +    L  ++  
Sbjct: 385 LALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDMLEKQSMS 444

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y+  + ++   LL L+N ++D+++I+ G Y+++    ++++++ E ++ +    + K  
Sbjct: 445 KYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAEYTKNKER 504

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
            I    D     +  D + + ++ILNL+SNA+K+T   G + V +          IS+KD
Sbjct: 505 NIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNEVTISVKD 564

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F Q   ++    +G G+GL + +SI+  H G+  I S+  EG E
Sbjct: 565 NGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINSEEDEGTE 624

Query: 468 VIAILPNTRVLNF 480
           +I  LP  ++   
Sbjct: 625 IIFTLPIKKIDEE 637


>gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 686

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 4/249 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     K+ F++ +SHELRTPL +I G   +     +    +E  +  +     +   L+
Sbjct: 304 QAVERLKAEFVSVVSHELRTPLTSIRGALGL-LTGGLLGPLSEKGRRMLDIAIANTDRLV 362

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LIN+ILD+ R+E+G+  L      L +++ +   ++Q  AQ+  + +    +   + +W
Sbjct: 363 RLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVMLL--CESKSAPLW 420

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD   + Q   NL+SNA+KF+  G  V V+      +   + + D G GI   ++ ++  
Sbjct: 421 ADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQ-VQVRVVDQGRGIPAEKLESIFE 479

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +    + G GLGL I +SI+  HGG+    S   +G   +  LP         
Sbjct: 480 RFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTLPLAVGETPAL 539

Query: 483 EDNHESTQY 491
            D   S   
Sbjct: 540 PDTSASADI 548


>gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 778

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 636


>gi|239628563|ref|ZP_04671594.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518709|gb|EEQ58575.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 838

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              I   +   ++            + +    +   ++    A   N+AKS FL++MSH+
Sbjct: 409 LRRIRLQVNPVHLDSEEVWIANLSDMTKEWEQREDLEQALIAANSANIAKSNFLSNMSHD 468

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAILG +++ +     P   E     +  I  S +HLL+LI+E+LD+SRIE+G+ 
Sbjct: 469 IRTPMNAILGMADIAKQYAANP---EKVTSCMEKISYSSKHLLSLIDEVLDMSRIESGKM 525

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSN 378
            L  +A SL  ++   + M Q   +EK +    + +     S+  DE  + ++++N+LSN
Sbjct: 526 LLDNTAFSLSCMLEGIVSMFQAPIKEKKLTFHMEKNHIENDSLIGDEFRLSRILVNILSN 585

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+K+T   G +  ++  +    +        IKD G G+ E  + T+   F +      +
Sbjct: 586 AIKYTPEQGEISFSIAESQPDKEGYARYRFIIKDTGRGMTEEFLKTIFLPFTRMEEKDGN 645

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             QG GLG+ IA+S++   GG   + S   +G      +          ++ ++   
Sbjct: 646 HTQGTGLGMAIAKSMLDLMGGSIHVESAPGKGSTFTVDVELEMGDAGESQEENKEPD 702


>gi|206901128|ref|YP_002250960.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
 gi|206740231|gb|ACI19289.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
          Length = 350

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 5/227 (2%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL + SHELRTPL +I    ++     +    +E Y E+   + +  + +  L++ +L+
Sbjct: 122 EFLGNASHELRTPLTSIQILIDLFSERKIT--LDEIYNEFFPYLRKEVERMSKLVSNLLN 179

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LSR+EAG  +L    ++L +I+ E +  L     +KN+EI  KI P    V AD + +  
Sbjct: 180 LSRLEAGVIDLQLKEVNLTEIIMEIVDRLTPHISKKNLEINLKI-PEKVIVSADPQHVDT 238

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +I N++ NAVK+T   G + + +   S     + +KD G GI E ++  +   F + + +
Sbjct: 239 IIFNIVENAVKYTPPSGSIEIGINEDSDN-VVLWVKDTGIGIPEKDLNRIFDRFYRVNKS 297

Query: 431 IKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             + +    GLGL I + ++  HG    + SK+ +G +   I+P  +
Sbjct: 298 RTNEDGFSTGLGLSIVKKLIERHGWSITVESKVNKGTKFEIIIPKRK 344


>gi|332711384|ref|ZP_08431316.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
 gi|332349933|gb|EGJ29541.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
          Length = 669

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS F++++SHELRTPL  I  F E +       L+    KE++   +R    L  
Sbjct: 401 ELNQAKSNFISNVSHELRTPLFNIKSFIETLHD-YDEKLSEAKRKEFLDTANRETDRLTR 459

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R         ++  + + +   QL A+++ IE+ Q+I+P L  V  
Sbjct: 460 LVNDVLDLSRLESCRI-YQLEPFDIVRPIEQTLRTYQLNARDQTIELAQEIEPDLPPVMG 518

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
               + QV+ NL+ N++KFT  GGRV +                   I I D G GIA  
Sbjct: 519 HYDLLLQVLANLVGNSLKFTESGGRVVIRAYQLEPELNTKEGKDRVRIEISDTGIGIAPE 578

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+  H  +  + S++  G      L
Sbjct: 579 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIIERHHSRVNLVSEVGVGTTFWFDL 634


>gi|315646393|ref|ZP_07899511.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278036|gb|EFU41356.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 477

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               ++ F+A++SHE+RTPL+ + G+SE +        + E  +E I  IH     +  L
Sbjct: 240 LEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESRELIQVIHEESLRMGRL 297

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWA 363
           + ++LDL+R+EAG  ELS   +   ++         +RA+E+ I++      P+L    A
Sbjct: 298 VKDLLDLTRMEAGHAELSLRKMDAGELCERVYRKFAVRAKEREIDLQLNKLHPNLMLEAA 357

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTV 420
           DE  + QV+ NLL NA + T  G ++ +T             + I D G GI   ++P V
Sbjct: 358 DEDKLEQVLTNLLDNAFRHTPSGKQIQITADRITLLDDEALQVKICDQGVGIPPEDLPFV 417

Query: 421 LTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A    E  G G+GL I ++I+  H G     S++ +G     I+P   V +
Sbjct: 418 FERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTIFTMIIPIKAVES 477


>gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039]
 gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039]
          Length = 611

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VILSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|261415582|ref|YP_003249265.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372038|gb|ACX74783.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326511|gb|ADL25712.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1503

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 8/256 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D+   + +  +   +   + A   + AK+ FL +MSH++RTP+NAI+GF+ +        
Sbjct: 959  DEETRKQKKDQEALERALQMANSASRAKTTFLNNMSHDIRTPMNAIIGFTGLAAEHI--- 1015

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N E   +Y+  I +S +HLL LIN++LD+SRIE+G+  ++     L D+V     ++  
Sbjct: 1016 DNKEQVADYLSKIGQSSEHLLALINDVLDMSRIESGKMNIANRPERLSDVVHMLKGIVLS 1075

Query: 342  RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398
              + +  + F +++      ++ D+  + QV+LN++SNA+K+T   G + + V       
Sbjct: 1076 DVRSRQQQFFVELENVHNEMIYCDKLRLNQVLLNVVSNAIKYTPKNGLITMNVKELPAET 1135

Query: 399  --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                    +KDNG G++E  +  +   F + + +  S  QG GLG+ I ++I+   GG  
Sbjct: 1136 GYGVYEFLVKDNGIGMSEAFLKQIFDPFTRVNSSTVSGIQGTGLGMSITKNIIDMMGGTI 1195

Query: 457  LIRSKLREGVEVIAIL 472
             + S+   G EV+   
Sbjct: 1196 KVSSEENFGTEVLMTF 1211


>gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12]
 gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1]
 gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12]
 gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1]
          Length = 611

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VILSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|225862628|ref|YP_002748006.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786705|gb|ACO26922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 456

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     + ++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHIRISV-IEENKHITITIEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1349

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 9/245 (3%)

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +  +  NLAKS F++ ++HEL+ P+ ++ G++E++    +GP+ NE    ++  I  + +
Sbjct: 1105 QAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPV-NEAQANFLNTIRANIE 1163

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             +  L++++ DLS+IE GR  L   A+SL ++V   +   + +  EK   +   I   L 
Sbjct: 1164 RMNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQTLEIAIPADLP 1223

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPG 411
              WAD   + QV++NL+SNA K+T  GG + V                  ++ +KD+G G
Sbjct: 1224 PAWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEVIHVWVKDDGIG 1283

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I+E +   +   F +          G GLGL I +S++   GG     S+ R+G      
Sbjct: 1284 ISEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFESEFRKGTTFHFT 1343

Query: 472  LPNTR 476
            +P ++
Sbjct: 1344 VPISQ 1348


>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1521

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 18/313 (5%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLS 235
              +L+   A +      + + IT   + ++ + +     +         I +L+V +   
Sbjct: 1078 PALLNGRGAPVGTLVREWHSQITGRWYLNHDRAIEWLEGRLVHMHMATDITDLKVMEQEL 1137

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
                 +AE  +LAK+ FLA+MSHE+RTP    L     +       +     +E++    
Sbjct: 1138 KRAMAKAEAASLAKNEFLANMSHEIRTP----LNGLLGMLQLLQLTILGGEQREFLEIAL 1193

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
             SG+ LL ++N+ILD+S+IE+G+ EL +  + L ++    + + + +A+ + IE+   +D
Sbjct: 1194 SSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAESVVAVFRHQARMRGIEVALVMD 1253

Query: 356  PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDN 408
             +L     AD+  +RQ++ NL+ NA KFT   G V V     +          + S+ D 
Sbjct: 1254 KTLPRHFLADKVRLRQILFNLVGNATKFT-ESGSVLVEAYPLAHPMPDGRAQLFFSVSDT 1312

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI + ++  +   F Q   +     QG GLGL I + ++A  GG   + S+L  G  V
Sbjct: 1313 GIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVALMGGTIAVDSELGAGTTV 1372

Query: 469  IAILPNTRVLNFI 481
            +  +   RV +  
Sbjct: 1373 VFTVAARRVDHAA 1385


>gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
          Length = 519

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 11/248 (4%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +          K+A+E N  KS FLA+MSHE+RTPLNAI+GFS ++        + E  
Sbjct: 282 DKKRIERLQYEVKKADEANRLKSAFLANMSHEIRTPLNAIIGFSNLLVE----ANDPEEK 337

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-AQEK 346
           KE++  I  + + LL LIN+I+D+++IE+G  + + S   +  ++ +    ++++  +  
Sbjct: 338 KEFVHIITSNNELLLQLINDIIDMAKIESGTLDFTYSDTDINQLMEDLCQQMKMKNTRPD 397

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +++I      S   +  D   + Q+++N ++NA+KFT   G +      +     Y  ++
Sbjct: 398 SVKIEFVQRQSECIINTDSNRIMQIMINFMTNAMKFTEQ-GSITFGYKKSEKD-IYFFVR 455

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +   +   F +      +  QG GLGLPI   I+   GG   + S+  EG 
Sbjct: 456 DTGIGIPSDKKEQIFDRFVKL----NTFAQGTGLGLPICAMIVDKFGGTIGVDSQQGEGA 511

Query: 467 EVIAILPN 474
                LP 
Sbjct: 512 TFWFRLPL 519


>gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
 gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
          Length = 720

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 19/267 (7%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +N+       EK    AE E  +S  +  + R  E +  KS FLA+MSHE+RTPLNAI+G
Sbjct: 467 TNITEEKLLEEKLHH-AEYETRQSELEIQKVR--EADKLKSAFLANMSHEIRTPLNAIIG 523

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FS ++              E++  I+++   LL LI +ILD S+IE+G  + S S  SL 
Sbjct: 524 FSNILAETDDKEEKE----EFVKIINKNSDLLLRLITDILDFSKIESGVLDYSLSDTSLK 579

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPS---LSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           DI  E     Q+ A +   ++    D        V  D K + QV+ NL+SNAVKFT + 
Sbjct: 580 DIFHE---QFQVHAMKMPEKVSLICDFDALPDIFVHTDPKRVTQVLSNLISNAVKFTEV- 635

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G +  +      +   + + D G GI+      +   F +      S +QG GLGL I +
Sbjct: 636 GSIRFSYRIVE-KYVLVEVIDTGIGISPQHQQAIFDRFVKV----NSFKQGTGLGLTICK 690

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
           +I+    G   + S+  EG      LP
Sbjct: 691 TIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|331017298|gb|EGH97354.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1123

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 9/354 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++        +  + +   LL  L   +     L Y             +   +M   + 
Sbjct: 558 VLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAFLK 617

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEE 244
                 + A  L+++  +T    +   +    Q       I   E       + ++ +E 
Sbjct: 618 AFLTVCVFAGVLAWWVVLTRESRRVAQEESERQTSLLIQEIDAHEKTDQALQKAKEASEA 677

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR++  +SHELRTPLN+ILGF+++++ +T  P     +++ +  I RS  HLL+L
Sbjct: 678 ANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLLSL 734

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           IN +LD+++IEAG+ +L  + I   + + +   M    AQEKN+    +++  +   V  
Sbjct: 735 INGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFAGTAQEKNLGFRLELEGRMPMVVRG 794

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQ+++NLL NAV FT   G V + V +         I D+G GIA  +I  +   
Sbjct: 795 DEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDSGIGIAPEQIERIFQP 852

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           F +G         GVGLGL I + + A  GG   + S   EG      L  + V
Sbjct: 853 FERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 904


>gi|228925838|ref|ZP_04088922.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833853|gb|EEM79406.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 463

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|332527238|ref|ZP_08403306.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111658|gb|EGJ11639.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 766

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 138/327 (42%), Gaps = 13/327 (3%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           + +     +    Q  + +    +  A             T  L        +    +  
Sbjct: 305 YHATLRFELPDGRQRWLDVRSRPLRRADGSIFWDGVALDATERLQAQQ----ALAEHRLQ 360

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L   +E       E  +RAE  NLAKS FLA+MSHE+RTPLNA++G + +I  ET+    
Sbjct: 361 LEQTVERRTRQLAEASQRAEAANLAKSAFLANMSHEIRTPLNAMIGMAHLIRRETLSV-- 418

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                + +G +  + +HLL ++N +LDLS+IEAG+  L    + +  +V   + M+  RA
Sbjct: 419 --RQSDRLGKLESAARHLLEVLNAVLDLSKIEAGKMALEAVPLRVETVVANVLSMVDERA 476

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
             K + +  +I+     +  D   ++Q +LN  +NAVKFT   G V +            
Sbjct: 477 GAKQLRLSSEIEHMPRDLIGDPTRLQQALLNYANNAVKFTEQ-GAVTLRARLVEQDEGSA 535

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                ++D+G GIA   +P +  +F Q   +      G GLGL I + +    GG+    
Sbjct: 536 LVRFEVQDSGIGIAPDVLPRLFEAFEQADRSTTRRAGGTGLGLAITRRLAELMGGEAGAS 595

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNH 486
           S   EG          R  +   E   
Sbjct: 596 SVAGEGSTFWFSARLRRDPSAAEEPPQ 622


>gi|325285799|ref|YP_004261589.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321253|gb|ADY28718.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 351

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 149/340 (43%), Gaps = 11/340 (3%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
              + +   TL + L +       + +   L F  V  ++    ++  H ++  +   + 
Sbjct: 13  FRSSFFIVITLTLLLGLYMYYAATVEWLFLLCFALVSFSI--SFLIIQHRVERFIYRRIK 70

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                 + +    F S       +   +++    +  K   D  + R E     +  FL 
Sbjct: 71  KIYDDVSLLESTSFSSAPITTDIKTLTEEIEKFAKGKKIEIDTLKIREE----YRKDFLG 126

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSR 313
           ++SHEL+TPL  + G+   +     G ++++  +E Y+   ++  + L+ ++ ++  +++
Sbjct: 127 NVSHELKTPLFTVQGYILTLLD---GAMDDKKVREKYLERANKGVERLIYIVKDLDMITK 183

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVI 372
           +EAG   +      ++++++    +L++RA +K I +   ++      V AD++ M+QV+
Sbjct: 184 LEAGGLTMEFEDFDIVELIQNVFDLLEMRAAKKQITLTFDMEYKEPILVRADKERMQQVV 243

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL N++K+    G   V+V         + + DNG GI++  +  +   F +   +  
Sbjct: 244 SNLLVNSIKYGHTNGTTEVSVENLIKNKVIVRVTDNGEGISKEHLSRLFERFYRVEKSRN 303

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I + I+  H  +  + S +  G E    L
Sbjct: 304 REVGGSGLGLSIVKHIIEAHNEKIYVESVVDVGSEFSFTL 343


>gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
 gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
          Length = 613

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E   +++         ++
Sbjct: 374 EKTEKERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--RDEEIAPDFLKVTLDETDRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L +  ++  ++V   +    +    +EK   I +        
Sbjct: 432 RMINDLLNLSRMDGGNAQLQKEYVNFNELVHFVLNRFDMMVTGKEKRYVIRRDFTQRDLW 491

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V++  T      +SI+D G GI + ++  +
Sbjct: 492 VEVDADRMIQVIDNIMNNAIKYSPDGGVITVSLSETHNH-ILLSIRDQGMGIPKVDLAKI 550

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            T F +   A    + G GLGL I++ ++  H G     SK   G      LP      
Sbjct: 551 FTRFYRVDKARARKQGGTGLGLAISREVIKAHKGSIWAESKENYGSTFYISLPYEPYEE 609


>gi|291518851|emb|CBK74072.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 779

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 196/428 (45%), Gaps = 35/428 (8%)

Query: 71  IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
            F  W++I   +++   +  ++    +  +     +   ++       L +T+    +  
Sbjct: 213 FFAGWTMICCGMWSLAETNCRQFFVPNFSLLSYMTYLSLIM-------LPFTMALYFDKL 265

Query: 131 TWTPEYLTIYKSATL-----LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                 L     A L     ++AL +   ++  L   + ++F  + + + T  +  +  L
Sbjct: 266 QEGRYRLIYLGLAVLEEFSAVMALLLQFFNDTDLFGVLPIAFVSIFITMITYIVTVIPDL 325

Query: 186 -------DISLAGMLATALSFFTYITYH---LFKSNVKILSCQAEKDDLI--AELEVAKS 233
                         +  A++      Y    L  +N+  L        LI  A +   K 
Sbjct: 326 VQGRVKKYWLEFIGIIGAMAMGAVQMYDYKFLHPTNLNSLYLIIGLLFLITMAYMRALKD 385

Query: 234 LSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +  R+   A +   A + F+  MSHE+RTP+NAILG +++I  E+     ++   +Y 
Sbjct: 386 IRNTEREMYAAVQAQDASTAFMTRMSHEMRTPINAILGMNKMILRES----KDDAILDYA 441

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            D++ +G +LL+++NE+LDL+++ AGR E+      L+D++REC  +++ RA+   +   
Sbjct: 442 RDVNSAGNYLLSIVNEVLDLAKVTAGRIEIIPEEYDLMDMIRECYSLVRPRAKANRLSFE 501

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQYIS-IKD 407
             +   L   +  D++ + QVI NLL+NAVK+T   GRV ++V    + GR   I  + D
Sbjct: 502 VDMSDVLPSKLMGDKERVIQVITNLLTNAVKYTPA-GRVTLSVQGKISEGRLLLIVGVTD 560

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+AE  IP +  SF +         +G GLGL I + ++   GG   + S+L +G  
Sbjct: 561 TGIGVAEENIPYLFDSFRRVGEFNNKKIEGTGLGLTITKQLVELMGGSISVESELGKGTT 620

Query: 468 VIAILPNT 475
              ++P  
Sbjct: 621 FTVMIPQE 628


>gi|240138280|ref|YP_002962752.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
 gi|240008249|gb|ACS39475.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
          Length = 1937

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 19/386 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L ++   +
Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +      A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++     G L +   +E+  
Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    ++L DI        +  A+E+++    
Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFVI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------RGQYIS 404
            ++DP L   +  D K ++QV+ NLLSNA KFT   G V + +G   G       +   +S
Sbjct: 1351 EVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLKIGSAEGSPLRAGTQWIAMS 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIAE +   +  +F Q          G GLGL I++ I    GG+ ++ S++  
Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGT 1469

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP       +     E++ 
Sbjct: 1470 GSTFTLFLPFEPPAQALTGRAVEASD 1495


>gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262393930|ref|YP_003285784.1| putative sensor/response regulator hybrid [Vibrio sp. Ex25]
 gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25]
          Length = 566

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
               L F   +         K +   ++    +    ++     E RKRAEE   A   F
Sbjct: 149 TVGELIFSVQLDQIDQSFISKQMELVSDLVHGVIGRHLSLEREVELRKRAEESEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +G    E  + Y+ ++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSAELLSRTQLG----EEQRHYLNNLTQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  ++ +  + +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWEELEKAIMGVFSAKAAEKRIHFSIDKKLGIPEFLVGDLERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI     P++   F Q   + 
Sbjct: 325 LVNLVGNAIKFTHLGG-VVLRVEWI-NGIAHFEVEDTGIGIPIEAQPSLFDPFVQVDRSA 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G      +P   
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPLKE 427


>gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1]
          Length = 1937

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 19/386 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179
             ++ L     ++  + +     T  I + ++ ++  M    +      +   L ++   +
Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
               +      A  L  +          L ++N ++       +    E+E         +
Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231

Query: 240  KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               EE        +  KS+FLA+MSHELRTPLN++L  S+++     G L +   +E+  
Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I+ +G  LL+LIN+ILDLS+IE+G   L    ++L DI        +  A+E+++    
Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFVI 1350

Query: 353  KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------RGQYIS 404
            ++DP L   +  D K ++QV+ NLLSNA KFT   G V + +G   G       +   +S
Sbjct: 1351 EVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLKIGSAEGSPLRAGTQWIAMS 1409

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D G GIAE +   +  +F Q          G GLGL I++ I    GG+ ++ S++  
Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGT 1469

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP       +     E++ 
Sbjct: 1470 GSTFTLFLPFEPPAQALTGRAVEASD 1495


>gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
 gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ
 gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
          Length = 597

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 186/450 (41%), Gaps = 18/450 (4%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
               +    D+        +L  +   +     L   +       P+  +   + L    
Sbjct: 120 APVAAASTQDQPKRLAEGAALALIGACVAALTQLSG-LAPAAPTGPLAFVLGFLALVTTG 178

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L+ G  +        +       + +  +  GL    + +        +         
Sbjct: 179 LGLAAGLLIGRRRQGARDDRYASEIIGLETLLDGLPHLAIAV------RGQGQVTAVRGA 232

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
               ++ + L N  L  A        + A   QA             +    +       
Sbjct: 233 APPGVTRADLVNRGLTGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVAL---- 288

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                 +    +        I      +   D+ R  AE     ++RFLA+MSHELRTPL
Sbjct: 289 ----DMHRVAPNQLVGVLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPL 344

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++     GPL++  Y EY   IH SG HLL+LIN++LD+S+IEA R+EL   
Sbjct: 345 NAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRG 403

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                + V+  + +L++++    +++   + P    V AD + ++Q++LNL+SNA+KFT 
Sbjct: 404 VFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTP 463

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V VT          I + D G GI+  ++  +   + Q   A + A +G GLGL +
Sbjct: 464 RGGQVTVTAHGY-DGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRA-RGTGLGLSL 521

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++    HGG+ +I S+L  G  V   LP 
Sbjct: 522 VRAFAQLHGGEMVIESRLGAGTTVSVRLPV 551


>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 556

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           + FLA MSHE+RTP+N ++G  +++    +        +EY   I RS   L+ +IN+IL
Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLLMETELQN----DQQEYADIIRRSADALVAVINDIL 225

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           D +++E+G+ E+ E    L+  ++E   +  +    KN+E+   +D     V + D   +
Sbjct: 226 DFTKLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQTPPVLYGDMGRL 285

Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFG 425
           RQV++NL+SNAVKFT  GG  V  +V   S  G     S+KD G GI   ++  +   F 
Sbjct: 286 RQVLINLVSNAVKFTDQGGVYVFASVKERSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFS 345

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q   ++     G GLGL I ++++   GG   + +   +GV     
Sbjct: 346 QLDSSMTRKYGGTGLGLAICKTLVDMMGGDIRVDTSGEQGVAFHFT 391


>gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 754

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 137/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 566 VEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIA 625

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
             ++E  +++D +   +  D + + QV+ N L+NA KFT   G + +   +        I
Sbjct: 626 -PHLEFLKEVDDTPLEINVDRERLIQVLTNFLNNACKFTET-GYIKLGYSYLPDEGNVQI 683

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D+G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 684 YVEDSGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGKIELKSEVG 739

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 740 KGSRFTVILPCRVV 753


>gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans]
          Length = 934

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            +   +                       +  +  + ++ + +     E+      L   
Sbjct: 441 FSPVVEHWEDDRYFRTRFVAEHVPPGIDASTTSEDVVQAALALTFDITEEKARSILLTEN 500

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K L  + +   +  NL KSRFLA+MSHE+RTP++ I+G SE +    +    NE   E+ 
Sbjct: 501 KQLIAKEKAALDASNL-KSRFLANMSHEIRTPISGIIGLSEHLSDCGL----NEEQLEFS 555

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S + LL L+N++LD S++E+G  ++     S + I+ + +I L+L+A+E+ + + 
Sbjct: 556 NSIEESAKFLLTLVNDVLDFSKMESGHMDVESIPFSPLKIISDTLIPLRLQAKERGLALT 615

Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIK 406
                   +++  D   +RQ++ NL+ N++KFT   G++ ++V       S    + ++ 
Sbjct: 616 FDCKLEPGAMFLGDPWRLRQILTNLIGNSLKFTQQ-GQIDLSVRSADLKDSTMVLHFAVH 674

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E  +  + T F Q   +      G GLGL I + ++   GGQ  + S   +G 
Sbjct: 675 DTGMGITEEVLDGLFTPFSQADGSTARLYGGTGLGLAICKQLVELMGGQISLASTWGQGT 734

Query: 467 EVIAILPNT 475
                +P  
Sbjct: 735 TATCKIPFK 743


>gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1128

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 144/362 (39%), Gaps = 6/362 (1%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+ W ++  V           +       +  +I  +       + F++   + +  + +
Sbjct: 332 GVDWAIVVEVPEKEAFARVHQLETLFVFAMLCAIVLVVAASHYLSNFITAPLLKLTWAAE 391

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + +  +    +       +         + +S    +    +++    ELE    L  +
Sbjct: 392 KVSAGDLDTDIINTERKDEIGRLAISFERMQRSIRDKILLIKQQN---EELESNLKLIQK 448

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+  + +K  +  I  S
Sbjct: 449 QNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITAD-HKYQLDIIISS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L  L++++LD  ++  G  ++   A+ +    R  + +       K I I  ++   
Sbjct: 508 GQRLATLVDDLLDYHKMRYGNLDIETRAVDISGATRLVLELSTHLVGNKPIRIINQVPND 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI   ++
Sbjct: 568 PLWVCADPQRLEQVLYNLVGNAIKYTSE-GKIVISATQVDDN-IRVQVVDTGQGIPAEQL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +     Q         QG GLGL I++ ++    G   + S+   G      LP    
Sbjct: 626 EHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIDLMQGTLYVSSQPMVGTTFSFTLPIAST 685

Query: 478 LN 479
             
Sbjct: 686 EQ 687


>gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1418

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 9/269 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I  L+  ++   E  ++A+  N AKS FLA+MSHE+RTP+N +LG  E++ L  +    +
Sbjct: 886  ITALKQQEAELIEACRQADSANHAKSAFLAAMSHEIRTPMNGVLGMVELLALTPL----D 941

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                + +  I  S + LL LI++ILD S+IEAGR +L+  A S+  IV +   +    A+
Sbjct: 942  PEQHDAVDTIQESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENAR 1001

Query: 345  EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
             K +     +D  +   +  D   +RQ++ N +SNA+KFT  G    RV +       + 
Sbjct: 1002 RKGLWFTTWVDERVAPCLLLDSLRLRQILQNFVSNALKFTQQGSVEMRVSLLAEDELAQT 1061

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
                + D G G+    +  +   F Q          G GLGL I + +    GG   + S
Sbjct: 1062 LRFDVVDTGIGMTRDTVARLFEPFTQAESDTTRRFGGTGLGLAICRRLARLMGGDVSLDS 1121

Query: 461  KLREGVEVIAILPNTRVLNFIPEDNHEST 489
            +  +G      L +  VL   P    ++ 
Sbjct: 1122 EPGQGSCATLTL-SAAVLEASPAPLADAP 1149


>gi|190571186|ref|YP_001975544.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357458|emb|CAQ54892.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 475

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 155/281 (55%), Gaps = 3/281 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +     F   +   L    + +L        ++A+           ++  E+EN  K +F
Sbjct: 184 IMVYSLFSILMGLLLVILILIMLYLHFSNTQMLAKQHKTNIELQRVKEALEQENANKIKF 243

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            AS++HELRTPLNAI+GF+++I+ ET+G +++  YKEY+ DI+ +G HLL LIN++LD S
Sbjct: 244 FASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGTHLLALINDVLDFS 303

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           + E+    + +   +L  I+  C+ ML  + +E  I + ++I      V AD K M+QVI
Sbjct: 304 KAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQLLVIADPKRMKQVI 363

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +NLLSNA+KFT  GG + + +          I   DNG GI + +I  V++ FGQ     
Sbjct: 364 INLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGY 423

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++  +G G+GLP+++ ++   GG F I+S+ + G  +    
Sbjct: 424 RN--EGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTITLSF 462


>gi|160934993|ref|ZP_02082379.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
 gi|156866446|gb|EDO59818.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
          Length = 581

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +S F+A+++HEL+TPL +I GF E+++    G  + ET + +   +    + L +LI+
Sbjct: 356 QLRSEFVANVTHELKTPLTSIRGFIELLKS---GDRDEETRQYFYDVLDIEAERLHHLID 412

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L LS+IE  + ++     +L   +   +   +  A++  I +  + + +   V +   
Sbjct: 413 DMLVLSQIENAKDDVQTVPCNLNQEIETVLRRAKPIAEKNGIVLRLEAEEAFL-VASSPT 471

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+  NL+ NA+K+    GRV VT+         + +KD G GI +  +P +   F +
Sbjct: 472 RLQQLFGNLVENAIKYNKPQGRVTVTLQRQR-NMVLVKVKDTGIGIPQEHLPRLFERFYR 530

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +      G GLGL I + +   + G   + S + EG      LP 
Sbjct: 531 VDSSRSREIGGTGLGLSIVKHLAGLYHGDVSVESVVGEGSVFTVRLPL 578


>gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
 gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
          Length = 1190

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 150/256 (58%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      ++ AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 933  RDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 992

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +++ L + + E + ++Q +
Sbjct: 993  GHSRYVEYATDIGRSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQPQ 1052

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++ +V AD + ++Q+ LN+LSNA++FT  GG++ V+  +       
Sbjct: 1053 ANSQRVIIRTALSQAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSVV 1112

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + I+D G G+   E+   +  F Q S   +    G GLGLP+ ++++  +   F I S  
Sbjct: 1113 MRIRDTGVGMTRSELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSSP 1172

Query: 463  REGVEVIAILPNTRVL 478
             EG  V    P+ RVL
Sbjct: 1173 NEGTLVEVTFPSPRVL 1188


>gi|213018588|ref|ZP_03334396.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995539|gb|EEB56179.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 444

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 155/281 (55%), Gaps = 3/281 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +     F   +   L    + +L        ++A+           ++  E+EN  K +F
Sbjct: 153 IMVYSLFSILMGLLLVILILIMLYLHFSNTQMLAKQHKTNIELQRVKEALEQENANKIKF 212

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            AS++HELRTPLNAI+GF+++I+ ET+G +++  YKEY+ DI+ +G HLL LIN++LD S
Sbjct: 213 FASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGTHLLALINDVLDFS 272

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           + E+    + +   +L  I+  C+ ML  + +E  I + ++I      V AD K M+QVI
Sbjct: 273 KAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQLLVIADPKRMKQVI 332

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +NLLSNA+KFT  GG + + +          I   DNG GI + +I  V++ FGQ     
Sbjct: 333 INLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGY 392

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++  +G G+GLP+++ ++   GG F I+S+ + G  +    
Sbjct: 393 RN--EGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTITLSF 431


>gi|157960737|ref|YP_001500771.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157845737|gb|ABV86236.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1333

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 12/260 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  ++  DE R  AE    AKSRFLA MSHE+RTP++ IL   E++    +  +N 
Sbjct: 662 ITLLKQKQAELDEARLIAESATEAKSRFLAMMSHEIRTPISGILSLLELM----VPHINT 717

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                   ++  SG +LLN++N++LD S+IEAG+  LS +   L   + E      +  +
Sbjct: 718 HEISGIHKNLTHSGNNLLNIVNDVLDFSKIEAGKLGLSPAVCQLSSFICELAQPHIVHVE 777

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
            K I+    +DP L+  +  D   ++QV+ NLL+NA KFT   G + ++V       + +
Sbjct: 778 RKGIKFKLWLDPKLAYSLTLDHLRLKQVLNNLLNNASKFTTE-GEIWLSVDLISSTDTEQ 836

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G GI+E +I  +   F Q  ++ +    G GLGL I + ++   GG+  + 
Sbjct: 837 TIGFAVTDTGIGISEKDITKLFIPFEQVDLSSERRFSGTGLGLSICEQLVKLMGGEISVT 896

Query: 460 SKLREGVEVIAIL--PNTRV 477
           S   +G      L  P   V
Sbjct: 897 STQGQGSTFRFSLSFPIAAV 916


>gi|229586477|ref|YP_002844978.1| Histidine kinase sensor protein [Rickettsia africae ESF-5]
 gi|228021527|gb|ACP53235.1| Histidine kinase sensor protein [Rickettsia africae ESF-5]
          Length = 497

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F  ++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLETNRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++R  +I+++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 TRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|75909433|ref|YP_323729.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703158|gb|ABA22834.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 650

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 13/258 (5%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +       L+ E  +E++  ++     L  
Sbjct: 393 ELNEAKSQFISNVSHELRTPLFNIKSFIETLHD-YGEDLSIEERQEFLQTVNHETDRLTR 451

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR   S   + L   + + +   QL A++K IE+ Q + P L  V  
Sbjct: 452 LVNDVLDLSKLESGR-SYSFDGVDLAQAIEQTLRTYQLNAKDKGIELIQDVAPGLPLVLG 510

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
           +   + QV+ NL+ NA+KFT  GG++ +                   I + D G GIA  
Sbjct: 511 NYDLLLQVLANLVGNALKFTPSGGKIAIRTYVLHTKPNSPNQPTQVRIEVSDTGIGIAPE 570

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +   F +         +G GLGL I ++I+  H  +  + S++  G      L   
Sbjct: 571 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVERHRSKVNLVSEVGVGTTFWFDL--I 627

Query: 476 RVLNFIPEDNHESTQYKC 493
              +  P+   ES + K 
Sbjct: 628 LFEDEAPKKMAESGEEKA 645


>gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
          Length = 424

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E     ++ F+++++HEL+TP+ +I GF E ++   M          ++  I    +
Sbjct: 195 RKLE---QIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAE--RFLEIIDIEAE 249

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LIN+IL LS IE    + +     L  +V +   ++Q  A+EK I +   +   + 
Sbjct: 250 RLHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL 309

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   M+Q+I+NL+ N +K+    G V V  G+       IS+KD G GI    IP 
Sbjct: 310 -MKANINRMKQLIMNLVDNGIKYNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPR 367

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +          G GLGL I + I+  + G+  + S + EG E I  +P
Sbjct: 368 IFERFYRVDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 421


>gi|261416771|ref|YP_003250454.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
            succinogenes subsp. succinogenes S85]
 gi|261373227|gb|ACX75972.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1398

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 10/259 (3%)

Query: 221  KDDLIAELEVAK-SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +D++   E+A+ +  ++  + A+  + AK+ FL +MSH++RTP+NAI+G++E+    T+
Sbjct: 861  NNDVVYRKEMAQQAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTELA---TI 917

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               N E  + ++G I  S  HLL+LIN++LD+SRIE+G+  L+E    L +I+     ++
Sbjct: 918  HIGNKEQVRNFLGKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIV 977

Query: 340  QLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            Q     KN++ F          V  D   + QV+LN++SNA+K+T  GG +  +V     
Sbjct: 978  QADINAKNLQFFANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKES 1037

Query: 399  RG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                       IKD+G G++E  +P +  +F + + +  S  QG GLG+ I ++I+    
Sbjct: 1038 DEDGYGVYEFRIKDSGIGMSEDFLPKIYDAFTRVNSSTVSGIQGTGLGMAITKNIVDMMD 1097

Query: 454  GQFLIRSKLREGVEVIAIL 472
            G   I+SK+ EG +V+   
Sbjct: 1098 GSIDIKSKVDEGTDVVLNF 1116


>gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
 gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
          Length = 588

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580


>gi|326424287|ref|NP_762701.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 881

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 11/321 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
               + F   ++  ST   +   +  I  A    T     +  T  +   N +      +
Sbjct: 286 AVFAMLFVLFMLGTSTWLRVYNKLNAILNALQSLTKEDEQSQQTRVIPDGNDEFTVFAKQ 345

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +I E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    + 
Sbjct: 346 INQIIDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELS 405

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  KE +GDI  S Q LL L+N+ILDLS+IE+G   +S     + + V + + + Q
Sbjct: 406 S----QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQ 461

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
            +A  KNIE+   +   +   V AD+  ++QV+ NL+ NA+KFT   G +   V + +  
Sbjct: 462 SKATSKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKE-GYISTFVNYQADE 520

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G GI + ++ T+   F Q   +I     G GLGL I + ++A  GG
Sbjct: 521 HDHQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +    S    G      +P  
Sbjct: 581 ELTATSTKGLGSCFSFTIPVE 601


>gi|240145207|ref|ZP_04743808.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202724|gb|EEV01009.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 891

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 177/444 (39%), Gaps = 33/444 (7%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPI--FPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           LFR   +L    + V  + T      I          L +       G K    D+    
Sbjct: 23  LFRFMSLLGTIAMAVGGVYTLAEGMEIKNVAALFAGALFMGML-FWAGNKFQQYDLCS-- 79

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                   ++     G+    L +    +   +         L   L   +L   +   +
Sbjct: 80  -------FILMSGLNGI---FLPVTFLRSGGLKS-----GMPLWFVLGFISLFFLLRGKS 124

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +       ++A +                 +    S        +  + + I    A   
Sbjct: 125 LAAGTVITIIADAYCFYT-----AYVHPERITYMESESVVYGDIIVSAVITIFLTCAFMF 179

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   E  +  +++ +         +SRFLA+MSHE+RTP+N I+G +E+   E     
Sbjct: 180 IQITLSEYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEMTLRE---EN 236

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++   E   +I  + + LL+LIN+ILDLS+IEAG+ E+  +     ++  E +    +R
Sbjct: 237 LSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWIR 296

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EKN+E    +   L   ++ DE  ++QV+ N+LSNA+K+T  G   + V    T    
Sbjct: 297 AHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGADE 356

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             +  ++ D G GI + ++  +  SF + +       +G GLGL I   ++   GGQ  +
Sbjct: 357 ILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTGLGLSICSQLVNLMGGQITV 416

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S  ++G      +P  +++N  P
Sbjct: 417 DSIYQKGSTFTITIP-QKIVNATP 439


>gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 5/254 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             ++E    +    E        N AK  FLASMSHELRTPLNA++GF+  + ++  G L
Sbjct: 238 RDVSERRGFEQALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGEL 297

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N E  ++ +  +  + +HLL LIN++L+L++IEAG+ EL+   I    +V E    L+ +
Sbjct: 298 NPEQTRQ-LEIVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQ 356

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A  K +E+             D + + Q+I+NL+ NA+KFT   G V + +       + 
Sbjct: 357 ALSKGLELILATQSDPIVFETDRRALSQIIINLVGNAIKFTLH-GSVRIDLVLEEAGKKR 415

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+ D GPGI E E+ ++  +F QG  +     +G GLGL +++ +    GG+    
Sbjct: 416 RLALSVSDTGPGIGEEELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCT 475

Query: 460 SKLREGVEVIAILP 473
           S L  G     ILP
Sbjct: 476 STLGTGSVFTLILP 489


>gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317]
 gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317]
          Length = 611

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VILSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|325124951|gb|ADY84281.1| Putative histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 635

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 391 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 448

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 449 LLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 508

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M +VI N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 509 LWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 567

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 568 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 627

Query: 479 NF 480
             
Sbjct: 628 EE 629


>gi|228932077|ref|ZP_04094969.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827660|gb|EEM73402.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 462

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 235 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 291

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 292 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 350

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 351 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPSEDLPHIFDRFYRV 409

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 410 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 455


>gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 396

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 142 LCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 201

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDLS +EA   + +   I L DI
Sbjct: 202 KLI----TFATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDI 257

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 258 CLQLKQQFCHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPK-GEIHF 315

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    + T+   FG+         QG GLGL + + ++  
Sbjct: 316 GY-REKEDFVEFYVKDSGIGIPAERVATIFRRFGKV----NDFVQGTGLGLTLCRMLVEK 370

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 371 MGGRIWLRSQEGQGSRFYFTLPLIR 395


>gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 853

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 139/318 (43%), Gaps = 14/318 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           LP  V       +  L     +   +  +           +         + +  +    
Sbjct: 390 LPGIVRAGIAGKLAPLLEGREV--DLEAVHFPEFTGGHSGYVNLRGVPFLRDDGSLAGGI 447

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             ++D+ A +E+ +      R  A+  N  KS FLA+MSHE+RTPLN +LG  +++    
Sbjct: 448 LIREDVTARIEM-ERTLTAARNEAQAANQTKSEFLANMSHEIRTPLNGVLGMLQLLRDTP 506

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +         EY     +S + L  L+ +ILDLSR+EAG+  +   +  L   V E + +
Sbjct: 507 LTA----EQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCESFELARAVTEAVEL 562

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---- 393
            +  A++  +E+   +D +L   V  D    +QV+ NL+ NA+KFTA  G V V      
Sbjct: 563 FRPSARQAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFTAK-GSVAVEAYPLP 621

Query: 394 -GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S+ D G GIA+ ++  +   F QGS       QG GLGL I +S++   
Sbjct: 622 PRREGETRALFSVADTGCGIADADLTRLFEPFVQGSRGYSRNAQGAGLGLSICKSLVELM 681

Query: 453 GGQFLIRSKLREGVEVIA 470
           GG   + S++  G  +  
Sbjct: 682 GGNIAVDSEVGRGTTIFF 699


>gi|317121611|ref|YP_004101614.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591591|gb|ADU50887.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
          Length = 482

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
           +A+       G +++          V     +V     G  +     + P          
Sbjct: 61  VAMTLRVYDAGGQLVQRLPDDAAPAVDPR--VVLARPAGPAYGFFPGLAPSIVDVPQGIT 118

Query: 140 YKSATL---------------LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
              ATL                   +  A   +++  A        +            +
Sbjct: 119 GAFATLHDGHQRWRVFVHPVERGGDATGAGPGYVVALAPLGGLDASMADFRVLLTGLGAL 178

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS----DETRK 240
             +                   L ++   I + +     + A      ++     +E  +
Sbjct: 179 GLVVAVAGSWAVAGSALRPVARLTEAARAIAASRDLSRRVQAAGRDELAMLAATFNEMLE 238

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E     + RF++  SHELR PL AILG  +++       L  E   + + +  R  + 
Sbjct: 239 SIETAYRLQQRFVSDASHELRAPLTAILGNLDLLRRRP--DLPPEEQAQALEEARREAER 296

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++L L+R +AG   L   A+ +  +V +     +  A+ + + +          
Sbjct: 297 LSRLVADLLALARADAG-VPLVRKAVDVDAVVLDAFQEARRLAKGQQLVLD---PLEPVR 352

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++Q++L LL NA+K+T  GGR+ + +   +G    +++ D G GI   ++P V
Sbjct: 353 IQGDADRIKQLLLILLDNAIKYTPAGGRIVLGL-QDAGGDAVLTVADTGVGIPAADLPHV 411

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A      G GLGLPIA+ I+  HGG   I S   +G  V   LP
Sbjct: 412 FERFYRADPARSRDPGGTGLGLPIARWIVEQHGGSIAIDSAPGQGTTVTVRLP 464


>gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 6/238 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F++++SHE++TP+ AI GF E +   ++    +     ++G I +    
Sbjct: 357 RLRKLENIRRDFVSNVSHEIKTPITAIKGFVETLRDGSVKNPADAE--RFLGIIEKHVDR 414

Query: 301 LLNLINEILDLSRIE--AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           L  +I ++L+LS+IE  +G+  LS     ++DI+   + +  +   E+ IEI      S+
Sbjct: 415 LEAIIEDLLNLSKIEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDVSCAESV 474

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            ++  D   + Q ++NLL NAVK++  GG +H++V         I+++D+G GI +  +P
Sbjct: 475 -TLKVDPTLLEQALVNLLDNAVKYSDTGGTIHISVT-EESGSITIAVRDHGVGINKKHLP 532

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F +   A      G GLGL I + ++  HGG   + S   EG      LP  +
Sbjct: 533 RLFERFYRVDKARSRQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLPKNQ 590


>gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
 gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
          Length = 589

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 5/235 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +++ EE    +  F+A++SHELRTPL  I  ++E +     G L     K ++G I   
Sbjct: 351 EQRKTEE---MRREFVANVSHELRTPLTNIRSYAETLVDNA-GELPPNMEKNFLGVILNE 406

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              + +++ ++L LSR ++G  EL  +  S    +R+    + L AQ     +   I+ +
Sbjct: 407 SDRMTHIVQDLLTLSRFDSGHSELKLAPFSFEGAIRDVYNAVLLDAQRHGHTLRLGIEEN 466

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L ++  D + + QV++N++SNA+K+T  GG + ++ G    R  ++ + DNG GI   + 
Sbjct: 467 LPNILGDRERILQVMMNVVSNAIKYTPDGGSIAISAGRLRDR-VWMEVADNGIGIPAADR 525

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           P +   F +   A      G GLGL IA+ I+  H G   +  K   G+ V   L
Sbjct: 526 PRIFERFYRVDKARSRESGGTGLGLSIAKEIIDRHEGVIRLVDKDGPGLTVRVEL 580


>gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 778

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 636


>gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15]
          Length = 775

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 161/418 (38%), Gaps = 31/418 (7%)

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
                        +  + +G     +     G    +       + LL +L +SA    +
Sbjct: 119 PDRVFRQELRVPQLEDLPLGHLIVTIDTYHYGALFLQRAGYTLISGLLKSLILSAALLAI 178

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-----LATALSFFTYITYHLFKSNVK 213
             + +      V+ ALS     S   + + +        + T +         +  S  +
Sbjct: 179 FYFVLTRPMLNVISALSQVRATSPEKVRLPIPANHREDEIGTMVGIINQHLETIDSSLAQ 238

Query: 214 ILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLA----KSR----------FLAS 255
           +   ++   +   +LE           E     +  N A    K            FLAS
Sbjct: 239 LRHAESAMKNYSTQLEQEVADRTREISEKNDALQRGNRALVKAKEDAVRRARARANFLAS 298

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLN +LG   +     +        +  I     +G+ LL L+N+ILD+S++E
Sbjct: 299 MSHEIRTPLNGVLGMLGLALEGELDS----AQRNRIEIALNAGESLLGLLNDILDISKVE 354

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           AG+  L     S+  ++ EC  +   +A+ K I +  +IDP L      D   +RQV+ N
Sbjct: 355 AGKLSLENIPFSVRHLIEECATLHAQQARRKRIHLVTEIDPDLPEDFLGDPTRVRQVLNN 414

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNA+KFT   G V +   + SG    I + D G G++   +  + + F Q        
Sbjct: 415 LLSNAIKFTDE-GSVKLKAAY-SGGSLRIDVVDTGIGMSTEGLHRIFSPFSQADAETTRL 472

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             G GLGL + + ++    GQ L+ S+   G      LP   V     + +      +
Sbjct: 473 YGGTGLGLTLCRQLVERMHGQILVDSREGSGTHFTVTLPL-PVHEASEDYDLPRVDSR 529


>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 867

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +        QA   + I E +  +    E +  AE  N +K+ FL ++SHELRTPLN IL
Sbjct: 456 RDERGGSVRQAGVAEDITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGIL 515

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++     + P       EYI     S + LLN+IN+IL++++IEAGR  L ++  S 
Sbjct: 516 GMLQLTRETRLKP----EQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFST 571

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            +++       +   + K +E+   ++P     +  DE  +RQ++ NLL N+VKFT   G
Sbjct: 572 NEVLETIYRFFRHSTEAKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQ-G 630

Query: 388 RVHVTVG------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            + V                 + IKD G GI   +I  V  SF Q         QG GLG
Sbjct: 631 HISVHASILPVTPRPGRVTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLG 690

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I +S++ +  G   + S+   G  +   L
Sbjct: 691 LGIVRSLVWSMNGTIAVDSETGMGTTIYVTL 721


>gi|149280628|ref|ZP_01886742.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149228612|gb|EDM34017.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 731

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D + KRA E    K  FLA+MSHE+RTPLN+ILGF+ +++        +     YI 
Sbjct: 223 QKLDLSEKRAREALSVKENFLANMSHEIRTPLNSILGFTNLLQRR----NADGVMAHYIV 278

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I ++G++LL +IN+ILD+S+IEAG   +     S+  ++    ++   R + K +    
Sbjct: 279 SIQQAGENLLAIINDILDISKIEAGMMRIVNKPFSIRGLLHSVEVLFSERVKSKRLGYHT 338

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDN 408
            +D  +  ++  D   + Q+++NLL N +KF+  G  RV V               + DN
Sbjct: 339 LVDGDVPDTLIGDATRLTQIMVNLLGNGLKFSEKGALRVGVKCKEVWPDHVVLVFEVSDN 398

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F Q   +I     G GLGL I Q++++   G   + S+  +G   
Sbjct: 399 GIGIEQEKLNQIFGRFNQADDSITRNYGGTGLGLSIVQNLLSIQHGDISVSSEAGKGTTF 458

Query: 469 IAILPNTRVLNFI--PEDNHESTQ 490
              +P  +  + I  P    ++++
Sbjct: 459 TFYIPYQKAADEILHPVPAPKTSE 482


>gi|89068749|ref|ZP_01156135.1| Sensory transduction histidine kinase [Oceanicola granulosus
           HTCC2516]
 gi|89045712|gb|EAR51774.1| Sensory transduction histidine kinase [Oceanicola granulosus
           HTCC2516]
          Length = 480

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 178/453 (39%), Gaps = 12/453 (2%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
           +  +  ++  ++         VA +   F       ++  + +     +L L ++V    
Sbjct: 21  LRDYARAVQTLTWQRQGIFAAVAVLTGSFFSPWKAALFFAVCMFCEFVDLRLSRRVAKIA 80

Query: 98  IKI-GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
                       + +   +A GL   +  +    T       ++ +   L A ++ A  N
Sbjct: 81  DGDYATTRRLYPFYIANTVASGLAIGIYAVWVGITGDGAG--MFTALFCLFAAALYASIN 138

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                +       +        I    +            L FFT I    F  +  +  
Sbjct: 139 NHQIASALAIRLTLYGGSFLV-ITVRDLYVYRPPLSSDMWLQFFTVIFVMYFLIDCSLGF 197

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +  + DL           +   +RA+   + +++F+A +SHELRTPL +I G  ++I  
Sbjct: 198 LRMYRHDL-----KQLENLEREHERAKAALVLRTQFVAIVSHELRTPLTSIKGSLDLINS 252

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G       K  +  I R+ + L +L++++LDL ++E GR    +  I +   + + +
Sbjct: 253 GRFGDF-PPQAKSLLQMIDRNSRRLADLVDDLLDLQKLEEGRMTFEKKTIDIRTFIADAL 311

Query: 337 IMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              +  A+  ++ +  K+D  +   V  D   + QV+ N++SNA KF+   G V + +  
Sbjct: 312 TSHEGLAKRYDVRLNVKVDCANPVYVHTDPSRLMQVLGNIISNAAKFSPENGDVDIWLD- 370

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + ++D G GI  G+   V   F Q   + +    G GLG+ I++ I+   GG 
Sbjct: 371 VENGRVRVYVRDRGVGIPPGQKEAVFGRFTQIDASDQRKFGGTGLGMNISREIIEAIGGT 430

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               S++ +G   +  LP   VL+   +D   S
Sbjct: 431 IDYESEVGKGTTFVIELPCAVVLDQASDDEETS 463


>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 1129

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 151/358 (42%), Gaps = 8/358 (2%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
             W L+  +           + K   +++  +I  +       + F++   + +  + + 
Sbjct: 333 ATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEK 392

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDE 237
           + +  + +  +       +         + +S    +   +++ D+L   L+  +  +DE
Sbjct: 393 VSAGDLDETMINTERKDEIGRLAVSFERMQRSIRDKMQLIKSQNDELEDNLKTIQKQNDE 452

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+     K  +  I  S
Sbjct: 453 ----LQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPI-PANQKYQLDIIINS 507

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ L  L++++LD  ++  G  ++ +SA+ L       + +       K I I  ++   
Sbjct: 508 GQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSD 567

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  V +D + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    +
Sbjct: 568 LGLVSSDPQRLEQVMYNLVGNAIKYTSE-GKIVISASVIDDN-IRVQVVDTGQGIPAEYL 625

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +     Q      +  QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 626 EHIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLA 683


>gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 150/364 (41%), Gaps = 27/364 (7%)

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
            G     L + +P   +   +    S+  L AL + +L              P+     T
Sbjct: 152 NGQIIGALFISDPKADSDALINRINSSIELTALIVGSLVLLFSLLLTRSMTRPLK--WLT 209

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            A   M     +    +  A      +     +    I S   E               +
Sbjct: 210 LAAEQMKQGKYAQRVPVPAAQDELGLLAQTFNEMADTIESDVNELRR-----------QE 258

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + R+            LA+++H+L TPL AI GFSE +  + +   +    +E    I R
Sbjct: 259 QARR----------ELLANIAHDLATPLTAIQGFSEALADDMI--QDPAARQETAQRIGR 306

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
             Q L  ++ ++  ++ +E+GR  L  + +SL +++ E + +++   +   I +  +   
Sbjct: 307 EVQRLRRMVADLQQMTSLESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRD 366

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEG 415
            +  V AD   + QV+LNLL NA + T +GG + V      SG+   + I+D G GI   
Sbjct: 367 DVPLVQADSDRVTQVLLNLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGIDSA 426

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-N 474
           ++P +   F +   +   A  G GLGL I ++I+  HGG+   RS   +G  +   LP  
Sbjct: 427 DLPHIFERFYRADRSRTGATGGSGLGLSIVRAIITAHGGKVWARSTPGKGTRISFSLPMA 486

Query: 475 TRVL 478
            +VL
Sbjct: 487 EKVL 490


>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 879

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 382 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 437

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLG 497

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V   S     I ++D 
Sbjct: 498 LYCFIEPDVPVAMNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVQRDSD-YLSIRVRDT 555

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 556 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 615

Query: 469 IAILPN 474
              +P 
Sbjct: 616 TVRIPL 621


>gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 885

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 8/313 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P  +AL T A  S  +L +         LS           S   ++S   +      
Sbjct: 422 MVPSQIALRTGAPQSGVLLGLERLDGSVLWLSVNAQPLRGEDGSVAGVVSSFFDITARKR 481

Query: 227 ELEVAK---SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             E  +   + ++  R+ AE  +  K  FLA+MSHELRTPL A+LG+  ++     G L 
Sbjct: 482 AEEERQGLLAAAESARQEAEAASHLKDEFLATMSHELRTPLTAVLGWVRMLRT---GKLP 538

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E   + +  + R+ Q    LI+++LD+SRI AG+  L    I L+ ++   + +++  A
Sbjct: 539 EERRDKALETVERNAQAQAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAA 598

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             K + +   ++P + +V  D   ++QV+ NLL+NAVKFT  GG V + +   +     I
Sbjct: 599 DAKGVRLLSLLEPGVGAVAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDR-ADGSAEI 657

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
           ++ D G GI    +P V   F Q          G+GLGL I +S++  HGG     S   
Sbjct: 658 TVSDTGQGIEPAFLPYVFEQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGE 717

Query: 463 REGVEVIAILPNT 475
             G   +  LP  
Sbjct: 718 GRGATFVVQLPLA 730


>gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 554

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           + ++    A   N AKS+FLA+MSH++RTP+NAI+G +++          +E     +  
Sbjct: 162 MLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKIARESG---EASEKIAGCLDA 218

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S +HLL LIN++LD+SRIE+G+ EL E    + D+V     +++ +AQ K+ E+   
Sbjct: 219 ITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRID 278

Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKD 407
                  +   DE  + Q++LNL SNAVK+T  GG + + V   +           +I D
Sbjct: 279 CSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGTIALVVQELAKTRPSYASVAFTITD 338

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG G++   +  +   F +      +  QG GLG+ I ++++   GG   + S+   G  
Sbjct: 339 NGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDSEKGRGSS 398

Query: 468 VIAILPNTRV--LNFIP--EDNHESTQYK 492
               L    V   +  P  E   EST Y+
Sbjct: 399 FRVTLELRVVSSADACPPLEVVPESTSYR 427


>gi|300869313|ref|ZP_07113904.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332690|emb|CBN59102.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 887

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 18/387 (4%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R+ L+         W++L                + A  L       ++         L+
Sbjct: 290 RVNLIAIARLQYKPWSVLFAQPIAVALAPVEKQIRDAMFLFTFIAGVVTIIAFAIGQLLT 349

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              + +        + ++        +   ++    I       N   L  Q   + L  
Sbjct: 350 KPIIYLTNIVLQFTAGNLD-------IRIKINSKDEIGQLAKSFNNMALQLQTSFETLEQ 402

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            ++   +     +++ E+ N AKS F+A+MSHELR+PLNAILGFS+++            
Sbjct: 403 RVQERTAELVIAKEKVEDANQAKSLFIANMSHELRSPLNAILGFSQLMVR---ATNLPPE 459

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E  G I+RSG +LL LIN +LDLS+IEAG+  L+     L  ++ +   ML L A   
Sbjct: 460 QHENAGIIYRSGDYLLTLINNVLDLSKIEAGKTILNPKDFDLHLLLDDLEDMLHLSATNA 519

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----G 400
            +++  K   ++   +  D+  +RQV++NLLSNA+KFT+  G++ ++V            
Sbjct: 520 GLKLVFKRHENVPRYICTDQVKLRQVLINLLSNAIKFTSE-GQITLSVFQGDRETTDIFN 578

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +  ++D G GIA  E+P +  +F Q   A K  ++G GLGL I++  +   GG   + S
Sbjct: 579 LHFRVQDTGVGIAAAELPKLFDTFSQA-QAGKEMQEGTGLGLAISRKFVQLMGGDISVES 637

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487
           KL +G      +         P+ + E
Sbjct: 638 KLGKGTTFQFNIQAKLGQETNPKISEE 664


>gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 407

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 153 LCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 212

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDL+ +EA   + +   I LIDI
Sbjct: 213 KLI----TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDI 268

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 269 CLQLEQQFWHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPK-GEIHF 326

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    I T+   FG+         QG GLGL + + ++  
Sbjct: 327 GY-REKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD----FVQGTGLGLTLCRMLVEK 381

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 382 MGGRIWLRSQEGQGSRFYFTLPLVR 406


>gi|330828900|ref|YP_004391852.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328804036|gb|AEB49235.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 698

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 16/254 (6%)

Query: 230 VAKSLSDETRKRAE---------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            A+ +S++ R+  E           N AKS+FLA M+HE+R+P+NA+LG  ++++   + 
Sbjct: 306 TARDISNQIRREEELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLGMLDLVQHAELA 365

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P      +  +     S + L  +I+++LD S+IE+         +  + + +  +  LQ
Sbjct: 366 P----EQQSLLRHATHSARLLQTIIDDVLDFSKIESQTLVFHCETLQPVQLCQSLVEPLQ 421

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            RA  K I +  ++D S+   +  D   + QV+ NLL NA+KFT   G+V + +GW   +
Sbjct: 422 ARATAKGIALVYRVDESVPRELQGDPMRLSQVMGNLLDNALKFTEQ-GQVTLHLGWQDEK 480

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GIA+ +   +   F Q   +      G GLGL I++ ++   GG+  ++
Sbjct: 481 -LLISVSDTGIGIADADQALLFEPFSQVDNSATRRFSGTGLGLAISKRLVTLMGGEIHLK 539

Query: 460 SKLREGVEVIAILP 473
           S+  +G      LP
Sbjct: 540 SEPGKGSCFWFELP 553


>gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 619

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 114/238 (47%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++E   +  F++++SHELRTPL ++  + E +    +   + E    ++G +    + ++
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELAPRFLGVVSDETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKID 355
            +IN++L LSR+++G  +L+   +++ ++    +    +  +       +K   I + + 
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYLT 488

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRK 547

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +   F +   A    + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 548 DLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|221197443|ref|ZP_03570490.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221204116|ref|ZP_03577134.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221176282|gb|EEE08711.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183997|gb|EEE16397.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 1001

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 123/260 (47%), Gaps = 10/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +    E R  AE  N AKS FLA+MSHE+RTPLNAI+G  E++    + P   
Sbjct: 496 ITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAP--- 552

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T +  +  I  S   LL +I+++LDLS+ E+ +  +      + D++ +     +  A 
Sbjct: 553 -TERRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLAS 611

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
            K +E+  ++ P L+     D   +RQ++ NL+ NA+KFT   G V +          G 
Sbjct: 612 AKGLELTCRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTER-GSVSIDARRVVRGAGGA 670

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI    +PT+   + Q   +I     G GLGLP+ + I     G   + 
Sbjct: 671 RVEIRVADTGIGIPADSVPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVD 730

Query: 460 SKLREGVEVIAILPNTRVLN 479
           S+ REG  +   LP      
Sbjct: 731 SREREGTTMCVTLPLPEAPP 750


>gi|171912784|ref|ZP_02928254.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 821

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 146/298 (48%), Gaps = 12/298 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               S    D      L         +  HL+    +    +     L+ E+ + K+   
Sbjct: 298 APGFSRFRTDGMPWVALGAGSLISFLLAGHLWSLARRAAEIRESNAVLLNEVAIRKAAEA 357

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                    N AKS FLA+MSHE+RTP+NAILG+S+++  E   P  +  +++ +  I  
Sbjct: 358 AAEAA----NQAKSEFLANMSHEIRTPMNAILGYSQILARE---PTLHPFHRDAVATILH 410

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK--NIEIFQKI 354
           SG HLL+LINEILDLS+I+AGR ELS S   L   +R+   M Q R +EK   + +   +
Sbjct: 411 SGDHLLHLINEILDLSKIDAGRMELSLSEFDLTATLRDLEGMFQQRCEEKQLGLRLELPV 470

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 V  DE  +RQV++NLL+NAVKFTA  GRV + V           ++D G GI+E
Sbjct: 471 PDHPIMVRGDEGKLRQVLINLLANAVKFTAR-GRVTLRVLPGDADVWRFEVEDTGTGISE 529

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                +   F QG     +   G GLGL IA+  M   GG   +RS++  G    A L
Sbjct: 530 ELQERIFEPFQQGGP--TTIPGGTGLGLAIARKQMEIMGGSLNVRSEVGRGSCFSATL 585


>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
          Length = 1560

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 133/258 (51%), Gaps = 12/258 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            ++  +  +      ++ AEE ++ K +FLA+MSHE+RTP+NAILG   +++   + P   
Sbjct: 872  VSRRKEFERALVLAKQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTPH-- 929

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y+   H +   LL L+N+ILD S+IEAG+  L      L  ++R+  ++L     
Sbjct: 930  --QADYVCKAHSAAGSLLGLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYG 987

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +K +E+   I P L  S   D+  +RQV+LNL  NA+KFT   G+V V+VG  +     +
Sbjct: 988  DKGVEVLFDIAPHLPDSFIGDDLRLRQVLLNLAGNALKFTDQ-GQVIVSVGVLAREDDRL 1046

Query: 404  S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +    + D G GIA  ++ ++  +F Q   +      G GLGL I + ++   GG   + 
Sbjct: 1047 TMRMAVSDTGIGIAADQLASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVE 1106

Query: 460  SKLREGVEVIA--ILPNT 475
            S+   G        LP +
Sbjct: 1107 SQPGRGSRFWFDITLPVS 1124


>gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 667

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 222 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 281

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 + Y + +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 282 ---EEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 338

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V +     
Sbjct: 339 QELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER-DD 397

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 398 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 457

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 458 TSGGRGKGATFTVRLP 473


>gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1139

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 14/285 (4%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            ++       +       +     A   D I +++  ++   + ++ AE  N AKS FLA
Sbjct: 568 GSVVPVALRLHRYPSRAGENYRYFAIVRD-ITDVKAIEADLRQAKETAETANRAKSDFLA 626

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTPL+A++G +E+    T+G L +   ++ +  +  S   LL LIN+ILD+SRI
Sbjct: 627 KMSHDIRTPLHAVIGMTEL----TLGTLLSAQQRDALETVRESAASLLALINDILDISRI 682

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EA + +++     L   +   +  ++ +A +K + +   I P++   V  DE  +RQ++ 
Sbjct: 683 EARKLDVAREDFDLRRTLAATVRAMRPQAAQKALFLGLAIAPAVPRFVTGDEVRVRQILT 742

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQ 426
           NL+ NA+KFT  GG V V+V   +G            ++ D G GI   ++ ++   F Q
Sbjct: 743 NLIGNALKFTDQGG-VTVSVAPMAGPDAPGDPLFLEFTVADTGVGIPSDKLASIFEMFTQ 801

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + ++     G GLGL I + +    GG     S    G     +
Sbjct: 802 ANASVGKHYGGTGLGLAICRELARLMGGGIRTESTPGRGSTFRVV 846


>gi|169335274|ref|ZP_02862467.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258012|gb|EDS71978.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM
           17244]
          Length = 617

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 132/243 (54%), Gaps = 7/243 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+  + AK RFL+++SHE+RTPLNAI G + + +       + +   +    I  S  +L
Sbjct: 232 AQNASNAKGRFLSNISHEMRTPLNAISGMTRIGKENI---DDKKEVTQCFEKIDTSVNYL 288

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            NLIN++LD+SRIE+G+ ++     +L  +++  I ++Q +  EK I    K D     +
Sbjct: 289 TNLINDVLDISRIESGKTKIENRPFNLDTLIKNIITIIQNQTNEKEINFICKYDLKSPYL 348

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
             DE  ++Q+++N++ NA+K+T   G+V V +   +          +I DNG GI   ++
Sbjct: 349 IGDELHLQQILVNIIGNAIKYTHNKGKVEVIISDDNIDNNKSKVNFTISDNGIGIEAKQL 408

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           PT+  +F +   A++   +G GLGL I+ +++   GG+  +RS++ +G      L   ++
Sbjct: 409 PTIFKAFERADNAMEQQYKGTGLGLAISYNLVKMMGGELKVRSEVDKGSSFFFDLELNKI 468

Query: 478 LNF 480
              
Sbjct: 469 NEE 471


>gi|254226171|ref|ZP_04919766.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
 gi|125621273|gb|EAZ49612.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
          Length = 857

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 16/327 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229
             + +    +  I+ A          T +   +++ N+  +  + +   +I + +     
Sbjct: 400 LFEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459

Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  S   R+ AEE    ++ FLA MSHELRTPLN +LG S++++   +    N+  +
Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++  +  SG+HLL ++N+ILD SR+E G++ + ++     ++V     + +    EK +
Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRXKELVCAIDRIYRPLCNEKGL 575

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404
           E+    +  + + V +D+  + Q++ NLL+NA+KFT   G + V +    G       I 
Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E ++  +   F Q          G GLGL I  S++    GQ  + S+   
Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694

Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490
           G      LP   V     P+    +  
Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721


>gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1000

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 14/267 (5%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                ++K AE  N AK+ FLA+MSHE+RTPLN I+G  +++    +    ++  K+Y+ 
Sbjct: 595 RALQRSKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVS 650

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +   S   L  L++++LDLSRIEAG   L +  ++  +++     +  L  +   +E+  
Sbjct: 651 NAISSSGRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELAL 710

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIK 406
           +I P L   +  D   +RQ++ NL+ NA+KFT   G +HV +   +      +   IS++
Sbjct: 711 EISPGLPQHILLDGGRLRQILFNLVGNALKFTEK-GHIHVRLDELAIHGGMRQLLLISVE 769

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +G +  +   F Q   +    + GVGLGL I + ++   GG   I S   EG 
Sbjct: 770 DTGIGIPQGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGT 829

Query: 467 EVIAILPNTRVLNFI---PEDNHESTQ 490
            +   LP           PE + E+ +
Sbjct: 830 RIHLSLPFRICAPDSGDKPETSGETPE 856


>gi|104773346|ref|YP_618326.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422427|emb|CAI96976.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 387 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 444

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 445 LLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 504

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M +VI N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 505 LWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 564 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 623

Query: 479 NF 480
             
Sbjct: 624 EE 625


>gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 944

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 17/272 (6%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLN 265
           + +    E    I EL+  +   +E     ++        N AKSRFLA+MSHE+RTP+N
Sbjct: 311 EQVRGFYELVSDITELKQTQFRLEELNTALQQRTEEAEAANAAKSRFLANMSHEIRTPMN 370

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG   +++   + P       +YI  +  + + LL ++N+ILD S+IEA + EL    
Sbjct: 371 AVLGLLHLLQRTELSP----RQHDYIEKVQMASRSLLGILNDILDFSKIEADKMELETVP 426

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384
               +++    + L    Q K +E+   +D  L  ++  D   ++QV+LNL  NAVKFT 
Sbjct: 427 FFPQELLNNLAVFLSPSLQNKKVELLFDVDADLPPTLLGDALRLQQVLLNLTGNAVKFTE 486

Query: 385 IGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             GR+ VT+              S+KD G GI   ++ +V T F Q   +      G GL
Sbjct: 487 Q-GRIVVTIQVVSLTPDQARVRFSVKDTGIGIPADKLESVFTGFVQAESSTTRRFGGSGL 545

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I++ ++   GG+  + S L +G      +
Sbjct: 546 GLTISRRLVRLMGGELEVESTLGKGSTFHFTI 577


>gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 778

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 636


>gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 1116

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 161/369 (43%), Gaps = 14/369 (3%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L   +  G  + L+ L           ++ + A+ ++A +I +  +     ++       
Sbjct: 309 LAPSMMNGRVYALIELGFNRAIGEVERSLLEGASEMLASAIRSGQDRTRLESLLEETQRQ 368

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
              L TQ           L             +     +  ++    +    +L A+ E 
Sbjct: 369 AEELQTQ--------QEELRVSNEELEQQSRILQESQARMELQQTELEQTNTNLEAQAEQ 420

Query: 231 A---KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               +    E  ++  + +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  
Sbjct: 421 LLRVQDALTEKARQLTQASQFKSEFLANMSHELRTPLNSTLILAKLLSDNKPGNLSTEQV 480

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K Y   I+ +G  LL LIN+ILDL++IEAG+  +    +++   ++  +  ++  A EK 
Sbjct: 481 K-YAQTIYAAGSDLLALINDILDLAKIEAGQATVEVEQVTIASTLQRLLEPMRPMAVEKG 539

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + +   ID ++  ++  D K + QV+ NLLSNA+KFT   G V + V  +       ++ 
Sbjct: 540 LVLELDIDAAVPATMQTDAKRLGQVLKNLLSNALKFTER-GSVAMRVSRSGRDRVRFAVH 598

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+   +   +  +F Q   +      G GLGL I++ +    GG+  + S   +G 
Sbjct: 599 DTGIGVPAEQQELIFEAFRQADGSTHRKYGGTGLGLSISRDLAELLGGKLTVTSTAGQGS 658

Query: 467 EVIAILPNT 475
                +P  
Sbjct: 659 VFTLEVPLR 667


>gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1037

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            V  +    E+  L  E E       E        +  K+ FL    HE+R+PL  I+G++
Sbjct: 786  VGTMRDVTERKRLDDERERLIKKLGE-------LDKMKTNFLNVAYHEMRSPLAPIVGYA 838

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             ++E   +    NE  K+Y+  I  S   L  LI  +L+++R+EAG+ ELS   +S+ +I
Sbjct: 839  SLLEQGEL----NEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEI 894

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            V   +     +A  K   I   +      V  D++ +  +  NL+SNA+K+T   GR+ +
Sbjct: 895  VNNVLERFGPQADAKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDI 953

Query: 392  TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
             V         + + D G GI + ++P     F     +++    G+GLGL I +  +  
Sbjct: 954  VVEDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKL 1011

Query: 452  HGGQFLIRSKLREGVEVIAILPNTR 476
            HGG+  + S+L +G +    LP  R
Sbjct: 1012 HGGEVWVTSELGKGSKFWFTLPKRR 1036


>gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501]
 gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501]
          Length = 611

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L+LSR++ G  +L    ++  ++V   +    +    QEKN +I ++       
Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ N+++NA+K++  GG +   +  T      +SI D G GI + ++  V
Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VILSITDQGLGIPKKDLNRV 548

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F +   A   A+ G GLGL I++ ++  H G     SK  +G      L
Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 778

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            GLGL +++S++    G   +++   EG   I  LP   VL   P      T
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 636


>gi|325685238|gb|EGD27356.1| sensor histidine kinase VicK [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 631

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 387 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 444

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 445 LLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 504

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M +VI N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 505 LWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 563

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 564 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 623

Query: 479 NF 480
             
Sbjct: 624 EE 625


>gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
 gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
          Length = 501

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 6/336 (1%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-ITYHLFKS 210
           + L +  L             A +    + + VL +    +++ +       I     + 
Sbjct: 150 AGLLSIHLSLQFIKDIAQKTFASTYMPFLVIVVLSLIALMLISNSTLKPIREIIATSKQY 209

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                + + +        E+A+ + +         N  +  F++++SH+ R+PL +I G+
Sbjct: 210 AAGNFNARIDVHTDNEFGELARYMEEMA-DELSRSNEYRRSFISNISHDFRSPLTSIKGY 268

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E +     G +  + +++Y+  +      L  L   +L+L+  ++   +L +S   +  
Sbjct: 269 IEAMID---GTIPPDKHEKYLQIVLSETMRLTKLTQGLLELNNFDSFDLQLDKSNFDIKS 325

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           I+   I   + R Q+K I +        + V+AD   ++QVI NL+ NA+KFT  G ++ 
Sbjct: 326 IILPTINTFEGRCQDKGIYLHAIFHTDNTIVYADRTRIQQVIYNLVDNAIKFTPEGRQIT 385

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V V        Y+S+KD G GI    I  V   F +   +    + G GLGL I + I+ 
Sbjct: 386 VQVT-EKSDKVYVSVKDEGVGIPPESIKKVFDRFYKTDPSRGKDKTGTGLGLAITKEIIK 444

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            HG    + SK+ EG E I  LP  + +    +  H
Sbjct: 445 AHGENITLTSKVGEGSEFIFSLPMQKEMQVPIKAVH 480


>gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1036

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            V  +    E+  L  E E       E        +  K+ FL    HE+R+PL  I+G++
Sbjct: 785  VGTMRDVTERKRLDDERERLIKKLGE-------LDKMKTNFLNVAYHEMRSPLAPIVGYA 837

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             ++E   +    NE  K+Y+  I  S   L  LI  +L+++R+EAG+ ELS   +S+ +I
Sbjct: 838  SLLEQGEL----NEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEI 893

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            V   +     +A  K   I   +      V  D++ +  +  NL+SNA+K+T   GR+ +
Sbjct: 894  VNNVLERFGPQADAKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDI 952

Query: 392  TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
             V         + + D G GI + ++P     F     +++    G+GLGL I +  +  
Sbjct: 953  VVEDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKL 1010

Query: 452  HGGQFLIRSKLREGVEVIAILPNTR 476
            HGG+  + S+L +G +    LP  R
Sbjct: 1011 HGGEVWVTSELGKGSKFWFTLPKRR 1035


>gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 283

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 9/280 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 10  FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 69

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 70  ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 124

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 125 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 184

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 185 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 241

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            GLGL +++S++    G   +++   EG   I  LP   V
Sbjct: 242 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPLVLV 281


>gi|170727177|ref|YP_001761203.1| histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812524|gb|ACA87108.1| histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 576

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 7/284 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              +L     +  +   +  K L   +       + +V    +   + RAE+   +   F
Sbjct: 160 TLGSLYINLSVPNNWLSTIEKQLFLFSNMISAAYQRQVLLDKTLAQKTRAEQSERSTKDF 219

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +    ++  ++ I ++ +SG+ L  +IN++LD+S
Sbjct: 220 VAMINHELRTPLNGLLGNTELMIETRL----SDYQEKLIKNMVQSGELLKVIINDLLDIS 275

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           +I AG  EL+E A S +++          +A EK +    +IDP     +  D   ++Q+
Sbjct: 276 KINAGMLELNEVAFSTLELTNAIQNTFAPQAAEKGLAFDFEIDPKTPENLSGDPDRIKQI 335

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +NL+ NA+KFT   G++ + + W     +++ I D G GI +  +  +   F Q +   
Sbjct: 336 FVNLIGNAIKFTDK-GKISIKIDWHESSFRFV-ISDTGCGIPKEHLANLFDPFTQVNNRS 393

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +G GLGL I + ++    GQ  + S+  +G      LP  
Sbjct: 394 NRLYEGTGLGLTICKLLVNEMLGQIALESQPDKGSSFTVTLPLA 437


>gi|125973802|ref|YP_001037712.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281417958|ref|ZP_06248978.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125714027|gb|ABN52519.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281409360|gb|EFB39618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 504

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELE 277
           E+ D+ +E E+ +          E +NL   R  F+A++SHELRTP+ +I GF E I   
Sbjct: 246 ERLDISSEDEIGELARSFNNMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILD- 304

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G +  E  K+Y+  +    + L  L  ++LDL+++EAG   ++    ++ +++R CII
Sbjct: 305 --GTIPPEKEKDYLLIVRDEIRRLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCII 362

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            L+    +K+IE+    +     V AD   + +V++NL+ NAVKF    G++ V+   + 
Sbjct: 363 KLENFITQKDIEVEANFEEEDMYVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTS-SY 421

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++DNG GI   EI  +   F +   +    + G GLGL I ++I+ +H  +  
Sbjct: 422 KNKVLVCVEDNGIGIDRNEIDLIWERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIW 481

Query: 458 IRSKLREGVEVIAIL 472
           + S++ +G +    L
Sbjct: 482 VESEVGKGTKFYFTL 496


>gi|329964007|ref|ZP_08301261.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328526430|gb|EGF53444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 638

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 14/254 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  + E ++    E + RAEE +  KS FLA++SHE+RTPLNAI+GFS+V+     G  
Sbjct: 393 KLKDDFEESEGALREAKDRAEESSRLKSAFLANVSHEIRTPLNAIVGFSDVLS---AGGS 449

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILD+SR+EA R   +     ++ + R+    ++ +
Sbjct: 450 SEEEQRTYFEIIKTNSDLLLRLINDILDVSRLEADRVSFTLERCDVVQVCRQVTATVE-Q 508

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
           A++ + +   +       +  D + ++QV++NLLSNA KFT + G + + +         
Sbjct: 509 ARKSDNKFRFECGHESVEMRTDIQRLQQVVINLLSNANKFT-VDGTITLKIEIDRDSNMA 567

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI   +   V   F +         QG GLGL I + I    GG+  I   
Sbjct: 568 VFSVTDTGCGIPSDKQKLVFERFEKL----NEYVQGTGLGLSICKLITEKWGGKVWID-- 621

Query: 462 LR--EGVEVIAILP 473
               +G   +   P
Sbjct: 622 PGYTDGARFMFTHP 635


>gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 549

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 9/232 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FLA+MSHELRTPLN ILG+++++          +  KE I  IHRSG+HLL L
Sbjct: 65  ANKAKSEFLANMSHELRTPLNGILGYTQIL---NHDKRLTDKQKEGIQIIHRSGEHLLIL 121

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           IN+ILDLS+IEAG+ E+S     L   +++ + ++++RA++K+IE+  +    L   V  
Sbjct: 122 INDILDLSKIEAGKLEMSPIDFGLPIFLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRT 181

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K +RQV+LNLLSNA+KFT   G V+  V +         ++D G G+   ++ ++   
Sbjct: 182 DKKRLRQVLLNLLSNAIKFTDK-GHVNFKVIY-DNGRARFEVEDTGCGVPADQLESIFLP 239

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILP 473
           F Q         +G GLGL I++ ++   GGQ  + + L  G        LP
Sbjct: 240 FQQMGD-QHQQLEGTGLGLAISKQLVTMMGGQLHVETLLGTGSLFWFDISLP 290


>gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
          Length = 583

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     +  F+A++SHEL+TP+ +I GF+E +    M   + E  + ++  I +  + 
Sbjct: 351 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEEALEHFLTIILKESER 408

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+LDLS+IE   ++L    + + +++ E   + + +A+EK I++  +  P L  
Sbjct: 409 LQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLV- 467

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D   ++Q+++NLL+NA+ +T   G+V         +   I +KD G GI E EIP +
Sbjct: 468 IRGDRNRLKQILINLLANALAYTPEHGQVA-VEAEEKEKEVLIHVKDTGIGIEEKEIPRI 526

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I + ++  H G   + S++  G       P 
Sbjct: 527 FERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 580


>gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 423

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/234 (38%), Positives = 131/234 (55%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA MSHELRTPLNA+LGFSE++  E  GPL N  Y+ Y+GDI  +G HLL LI
Sbjct: 174 SRAKSAFLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALI 233

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           ++IL+LSR++ G   ++   + L  +    +  L+  A E  + + +++ P L  +  D 
Sbjct: 234 DDILELSRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPLLQGDA 293

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + + Q++ NLLSNAV  T  GG V +T       G  + + D G GI   ++P +L  F 
Sbjct: 294 QSLTQMLTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPFD 353

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
                I     G GLGLPI + ++  HGG+  + S+   G  V+ + P  R L 
Sbjct: 354 PPDSTIARNSCGTGLGLPIVKRLVEMHGGRMELTSQPGVGTSVVLVFPAERSLP 407


>gi|47568664|ref|ZP_00239361.1| histidin [Bacillus cereus G9241]
 gi|47554652|gb|EAL13006.1| histidin [Bacillus cereus G9241]
          Length = 613

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|157964296|ref|YP_001499120.1| histidine kinase sensor protein [Rickettsia massiliae MTU5]
 gi|157844072|gb|ABV84573.1| Histidine kinase sensor protein [Rickettsia massiliae MTU5]
          Length = 498

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F A++SHELRTPLNAI+GFSE++  E   
Sbjct: 242 ARQIIEEQLETNRNLKARIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 299

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++   +I+++
Sbjct: 300 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLILVK 357

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 358 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 417

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L+ FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 418 LVYIKVIDTGIGIEEKDIPKTLSVFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 477

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 478 SKINEGTTITITF 490


>gi|52145273|ref|YP_086730.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978742|gb|AAU20292.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 613

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|329929853|ref|ZP_08283529.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
 gi|328935831|gb|EGG32292.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
          Length = 477

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               ++ F+A++SHE+RTPL+ + G+SE +        + E  +E I  IH     +  L
Sbjct: 240 LEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESRELIQVIHEESLRMGRL 297

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA- 363
           + ++LDL+R+EAG  ELS   +   ++         +RA+E++I++      S   + A 
Sbjct: 298 VKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDIDLQLNKLHSNLQLEAA 357

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTV 420
           DE  + QV+ NLL NA + T  G ++ +T      ++     + + D G GI   ++P V
Sbjct: 358 DEDKLEQVLTNLLDNAFRHTPSGKKIQITADRIAVSNTEALQVKVCDQGVGIPPEDLPFV 417

Query: 421 LTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A    E  G G+GL I ++I+  H G     S++ +G      +P  
Sbjct: 418 FERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTVFTMTIPTK 473


>gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 615

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  ++ + + +    +++    L +E+R    E N   + FL+++SHEL+TPLN I  
Sbjct: 327 SILHDVTSKIQVEKFEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +++       ++ E   +Y+  I ++   L+ LIN +LD +++++G  +L+    +++
Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++ E  + +   A+ K I I    +     +  D   + ++ILNLLSN++KFT  GG +
Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V V    G   Y+ +KD G GI   ++ ++   F Q    +K  ++G G+GL + +S +
Sbjct: 502 FVNVK-DCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             H G   I+S+L +G E I  LP 
Sbjct: 561 EMHNGTVHIKSELGQGTEFIIKLPA 585


>gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 679

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 14/347 (4%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLA 194
            L +   + L     +    +     A   S     + + + A        D+       
Sbjct: 256 GLLMLAHSLLHGGELLEWFVSPRALLAGLASTGTTALIVLSAASAGRSPGRDVRALANRL 315

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENL 247
            A+ +    +     +    L+      +L   LE  ++   E          R  + + 
Sbjct: 316 DAIGWNDARSARRPLAGPVRLTSFDAVGELFRNLEQLRARLAEDVSTYQRALDRTHDADQ 375

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK  FLA++SHELRTPLN+I+GF++++    +    N++  E +  I   G+ L  LI +
Sbjct: 376 AKGEFLAAVSHELRTPLNSIMGFAQLLLETKL----NDSQVEDVKLILAGGRQLHELIAD 431

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           ILDLS IE+G  +L     +L ++V E + + Q + +++ +E+   +   L ++  D + 
Sbjct: 432 ILDLSMIESGELDLRVQHCALDELVAELVDIHQAQVRDRELELVADVADDLPTIECDRRR 491

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV+ NL+SNA+KFT   G V V           I++ D G GIAE E+P V   + Q 
Sbjct: 492 IGQVLTNLMSNAIKFTET-GSVTVRARLEQDDYVSIAVIDTGIGIAESELPGVFEEYRQA 550

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               K   +G GLGL IA+ I+  HGG+    S L EG      LP 
Sbjct: 551 -GERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGSTFRLTLPL 596


>gi|324324689|gb|ADY19949.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 463

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     + ++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHIRISV-IEENKRITITIEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|307610980|emb|CBX00603.1| sensor histidine kinase [Legionella pneumophila 130b]
          Length = 773

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  ILG  E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P      +  +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKKLPS---FVQNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+ +     +   L     D   ++ +++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKLVFSMDLPDEL-QAQIDPDKIQHILINILSNAIKFTPQNAKVRIRLVQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +     + I+DNGPGI      T+   F Q          G GLGL IA+  +  HGG 
Sbjct: 338 INPETCRLQIEDNGPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L  +    G      LP  
Sbjct: 398 ILAGNARNGGAIFTIELPLK 417



 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                 +F+   SH+L+ PL A+      I  E +G + +E  K+Y+  + +    +  L
Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +L  +  ++G        I    ++ + I  L          +  +++ +L  +   
Sbjct: 648 LDGLLKYA--QSGYVFDKVRIIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700

Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           E  +R+V   LL N+++      G + +       R     + D+GPGI +         
Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKNIKTEFFNY 759

Query: 424 F 424
           F
Sbjct: 760 F 760


>gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 691

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 142/278 (51%), Gaps = 6/278 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +      +        +  +  +  + E+++A+    + ++ AEE N AKS FL+SMSH
Sbjct: 258 RWIRARGQMTYDEAGKPTRMSGTNMDVTEIKLAEERVLKAKEVAEEANRAKSDFLSSMSH 317

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF+++              +  I +I R+G+HLL L+ ++LDL++IE+ R
Sbjct: 318 ELRTPLNSILGFAQL---CDADKSLLPEQRANIAEIRRAGEHLLQLVGDVLDLAKIESRR 374

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLL 376
              S   ++   ++ E +  LQ +A+ + I +  +   D S   V AD   ++QV LNLL
Sbjct: 375 MGFSLEPVTPARLLAEAVSSLQSQAEMRGISVTLEPACDESDVDVVADAVRLKQVFLNLL 434

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+K+   GG VHV           +++KD+G GIAE     +   F +      S+ +
Sbjct: 435 SNAIKYNVDGGSVHVGCARLEEAFLRVTVKDSGRGIAEHLQKQMYQPFNRLGN-EASSIE 493

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G G+GL I + ++   GG     SK   G E    +P 
Sbjct: 494 GSGVGLVITKQLVEQMGGLIGFSSKENVGSEFWVDMPV 531


>gi|326202280|ref|ZP_08192149.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987398|gb|EGD48225.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 620

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 140/267 (52%), Gaps = 8/267 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV--IE-LETMGP 281
           +AE      ++++   +  E +  K+ FL ++SHELRTPLN ++   ++  ++  +  G 
Sbjct: 340 VAEEAAVTKVANQANDKLIELDKLKTDFLCNVSHELRTPLNLMVSSLKLSALKISQNHGV 399

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L+     ++   ++++   L  +IN I+D+++I+AG  +L+ +  +++D+V E ++ +  
Sbjct: 400 LDTVMMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLDLNLTNNNIVDVVEETVLSVAS 459

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             ++K I +    D     +  D   +++++LNL+SNAVKF + G  ++V++        
Sbjct: 460 HIKDKGITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNSSGREIYVSIE-DCTENI 518

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            IS+KDNG GI+    P +   F Q   ++    +G G+GL I + ++  H G   + S+
Sbjct: 519 KISVKDNGIGISLENQPFIFDRFIQVDKSLTRQHEGSGMGLTITKYLVELHKGTITLESE 578

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488
             +G      LP   V    P+  H+S
Sbjct: 579 PTKGSTFTITLPVYLV----PKSAHKS 601


>gi|153801730|ref|ZP_01956316.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|124122754|gb|EAY41497.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
          Length = 514

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 73  PVYSALITGIQAQISDSVLILLGQDKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 132

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 133 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 187

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 188 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 247

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 248 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 305

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 306 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 365

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 366 TFTLYIPLQSRLKNIKQSTSSSQQI 390


>gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1318

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            +   +  +  + E  +   +    KS FLA MSHE+RTPLN+I+GFSE+++  +    ++
Sbjct: 918  VTRQKELQRRTAEALELTRQAYQTKSNFLAMMSHEIRTPLNSIIGFSELLQATS---PDS 974

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E   +Y  +I+ +GQ LL LIN++L++SR EA   E+    +    ++ E   + +  A+
Sbjct: 975  EELHDYAANINTAGQTLLQLINDVLEISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMAR 1034

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRG 400
            +K ++   +    L  ++ ++  +RQ++LNL+ NAVKFT  GG + V+  + +       
Sbjct: 1035 KKGLDFRIEAPAELPEIYLNDARLRQILLNLVGNAVKFTEKGG-ISVSADFRATDSGHGR 1093

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIA---IKSAEQGVGLGLPIAQSIMANHGGQFL 457
              I+++D G GI  G    +   F Q             G GLGL I + ++   GG   
Sbjct: 1094 LEITVRDTGIGIDPGLHSRIFDPFVQADEGAVRGNRTTNGTGLGLSIVKRLLDKMGGSVT 1153

Query: 458  IRSKLREGVEVIAIL 472
            + S    G     + 
Sbjct: 1154 LESIPGTGSTFRILF 1168


>gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1064

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 9/243 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS F+A+MSHE+RTP+N +LG +E++    +    ++  +++      S Q LL ++N+I
Sbjct: 415 KSLFVANMSHEIRTPMNGVLGMTELLLTTEL----DDEQRDFAETARHSAQALLGILNDI 470

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+I+AG+ ++      L  ++ E   +L LRA+EK IE   +++PSL   +  D   
Sbjct: 471 LDFSKIDAGKLDIETIDFDLHGVLNEISSLLALRAEEKGIEFICRVEPSLPARLRGDPGR 530

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFG 425
           +RQV+LNL+ NA+KFT  G  V        G        I+D+G GI    +P + + F 
Sbjct: 531 LRQVLLNLVGNAIKFTDHGEVVVSVGVEDRGEPLRVRFEIRDSGIGIPAETLPALFSPFT 590

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPE 483
           Q   +      G GLGL I++ ++   GG+  +RS+   G      LP  R      +P 
Sbjct: 591 QAEGSTSRRFGGTGLGLSISKRLVELMGGEIGVRSQPGVGSTFWLALPFARQPGGEHLPP 650

Query: 484 DNH 486
            + 
Sbjct: 651 ASD 653


>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
 gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 881

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 11/321 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
               + F   ++  ST   +   +  I  A    T     +  T  +   N +      +
Sbjct: 286 AVFAMLFVLFMLGTSTWLRVYNKLNAILNALQSLTKEDEQSQQTRVIPDGNDEFTVFAKQ 345

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +I E +         ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    + 
Sbjct: 346 INQIIDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELS 405

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  KE +GDI  S Q LL L+N+ILDLS+IE+G   +S     + + V + + + Q
Sbjct: 406 S----QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQ 461

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
            +A  KNIE+   +   +   V AD+  ++QV+ NL+ NA+KFT   G +   V + +  
Sbjct: 462 SKATSKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKE-GYISTFVNYQADE 520

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     + D G GI + ++ T+   F Q   +I     G GLGL I + ++A  GG
Sbjct: 521 HDHQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +    S    G      +P  
Sbjct: 581 ELTATSTKGLGSCFSFTIPVE 601


>gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
 gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
          Length = 1425

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 4/247 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R  AEE + +KS F+A++SHELRTPL +ILGFSE+     +    +E       DIH +
Sbjct: 593 ARDLAEEASRSKSEFVANISHELRTPLQSILGFSEL---GMLRGRQHEKLAAMFSDIHAA 649

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ +L L+N++LD+++IE+         I + D++ +    ++L    K +++   +  +
Sbjct: 650 GQRMLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRA 709

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
                 D    +QV+ N+L+NAVKF+  G  + ++         +I + D GPGI   E+
Sbjct: 710 PLIAKVDPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSEL 769

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V  +F Q S        G GLGL I + I+  HGG+    +    G     +LP    
Sbjct: 770 EAVFEAFVQSSQTR-DGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLPTAGY 828

Query: 478 LNFIPED 484
            + +P D
Sbjct: 829 TDTMPAD 835



 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+ L ++ +   ++   A+  N AKS FLA+MSHELRTPL +I GF+E++EL +  PL  
Sbjct: 1166 ISRLALSHAALTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPL-- 1223

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +E    I +  +HL  L+ EILDL+RIEAG        + L D+V E   + ++ A 
Sbjct: 1224 --IQEQSALIRQGAEHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAV 1281

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QY 402
             K++ +   +  +    +  D   ++Q++ NLLSNA+KFT   GRV + V         +
Sbjct: 1282 AKSLALTAAVSDAAPQTLVTDRLKLKQILSNLLSNAIKFTPA-GRVEIFVDACPDGSQVH 1340

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
              + D GPGI       +   F QG   I     G GLGL +++++    GG   +RS +
Sbjct: 1341 FHVNDTGPGIPASLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAV 1400

Query: 463  REGVEVIAILPN 474
             EG      LP 
Sbjct: 1401 GEGSTFTLSLPL 1412


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 230 VAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNE 285
            +    +E ++RAE     + AK+ F +++SHE RTPL  +LG  E  ++    G     
Sbjct: 379 QSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDT--GEPLPP 436

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++    +HR+G  LL L+N +LD SRIEAGR +       L     +     +   ++
Sbjct: 437 RQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEK 496

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + +        + V+ D +   +V+LNLLSNA KFT +GG V V++   + R   +++
Sbjct: 497 AGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGG-VRVSLRAEADR-AVLTV 554

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI E E+P V   F +   A   + +G G+GL + Q ++  HGG   + S + +G
Sbjct: 555 ADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQG 614

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP    +  +P + 
Sbjct: 615 SRFTVTLPLG--MAHLPAEQ 632



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 28/278 (10%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + E  +A+  S+   ++ +  +  K  FLA ++HELR P+ AI     ++E       + 
Sbjct: 937  VTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLER---SEGDT 993

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +     R   +L+ L++++LD+SRI  G+ EL +  + L  +V+  + + +   +
Sbjct: 994  AKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQNALAVTRPLIE 1053

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---Q 401
             +   +   + P    + AD   + QV++NLL+NA K+T  GGR+ V++      G    
Sbjct: 1054 ARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNGTRQA 1113

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA--------EQGVGLGLPIAQSIMANHG 453
             + +KD G GI    +  V   F Q + ++  +                   + ++  HG
Sbjct: 1114 VLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTL--------VKRLVEMHG 1165

Query: 454  GQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G     S+   +G E    LP       +P + HE+++
Sbjct: 1166 GHAEAFSQGPGQGSEFTVRLPLA-----MPPEAHEASE 1198


>gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 749

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 157/453 (34%), Gaps = 20/453 (4%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
             +GL     + F           L R+ P+      LV    +      +  +  L   
Sbjct: 19  WGIGLALRGGIGFAATFALCFA--LLRILPLTSALPQLVTIGASAILALAVAEIAVLWGE 76

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            V       G    N  +      +                     +         +   
Sbjct: 77  VVRLRRDHAGLAQRNERLADRNWELEESEYRARNALESQGD-----LIVLRDNHGRIAFA 131

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A   +A             A+  + F + V       +      +    +       +
Sbjct: 132 NDAFCALAG--------EHRAALIGARFALQVIEQGGETIEADGTKVYDQKIATPDGPRW 183

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 L ++     +        + E    +    E R  A   N AKSRFLA  SHE+
Sbjct: 184 ISWREGLIRAGADQAAEWQCVGRDVTERTETERALAEARDLACAANRAKSRFLAMASHEI 243

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN I+G S ++    + P        Y+  +  SG  L +LI E+LD S+IEAG+ +
Sbjct: 244 RTPLNGIIGMSGLLLDTELSP----EQITYVKAVKTSGDALASLIEELLDYSKIEAGKID 299

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L     +L  ++ +   +L  RAQ + +EI   +D  L   V  D   +RQV+LNL  NA
Sbjct: 300 LDAKPFALTALIEDTAELLAPRAQARQLEIATYVDERLPAHVIGDAARLRQVLLNLAGNA 359

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KFT  GG   +             + D G GIA      +   F Q          G G
Sbjct: 360 IKFTETGGVSLIVEPGLMPDEIRFLVSDTGIGIAPEAQARIFREFEQADEQTARNFGGTG 419

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I++ I+   GG   +RS+   G    A +
Sbjct: 420 LGLSISERIVKRMGGHIALRSQPGHGSIFEATI 452


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                K RF  ++SHELRTPL  I+   E +         N   ++ +  I R+  +LL+L
Sbjct: 804  LEEMKYRFFTNISHELRTPLTLIIAPLESLLK----KEENPDTRKQLKTIDRNAHNLLSL 859

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            +N++LD  RIE     L+    +L D++          ++EKNI       P    + AD
Sbjct: 860  VNQLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITAD 919

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVL 421
               + +V+ NLLSNA KFT  GG V +        G+    I ++D+G GI   E   + 
Sbjct: 920  SPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHIF 979

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              F Q   + K    G G+GL +A+  +  H G+  + S   +G      +P  ++ + +
Sbjct: 980  ERFYQA-NSHKDNT-GSGIGLNVAKEYVQLHNGKIEVSSVPGKGSCFTVRIPVGKI-SHV 1036

Query: 482  PED 484
            P +
Sbjct: 1037 PSE 1039


>gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
 gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
          Length = 935

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 8/243 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KSRFLA +SHE+RTPLN I G S ++E  ++    +     Y+  I  + Q + ++IN+
Sbjct: 317 EKSRFLARVSHEIRTPLNGIRGMSYLLEKTSL----DANQMRYVKTISGATQTMQSIIND 372

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           IL+ SR++  R  L     +L D++  CI +     Q+K +         +   +  D  
Sbjct: 373 ILEFSRLDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPT 432

Query: 367 GMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            + Q+++NLL+NAVKFT  G     V V             +KD G G+ E ++  +   
Sbjct: 433 RLAQILINLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQMENLFKP 492

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q + +I     G GLGL I ++++   GG   + S++ +G    A +P T  +    E
Sbjct: 493 FVQANASIHRKYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIPYTLDIQGSKE 552

Query: 484 DNH 486
           +  
Sbjct: 553 EQQ 555


>gi|229035123|ref|ZP_04189069.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
 gi|228728189|gb|EEL79219.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
          Length = 613

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|34580746|ref|ZP_00142226.1| histidine kinase sensor protein [Rickettsia sibirica 246]
 gi|28262131|gb|EAA25635.1| histidine kinase sensor protein [Rickettsia sibirica 246]
          Length = 468

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F  ++SHELRTPLNAI+GFSE++  E   
Sbjct: 212 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER-- 269

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++R  +I+++
Sbjct: 270 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 327

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 328 TRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNPGGSVTIALEKDELAK 387

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 388 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 447

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 448 SKINEGTTITITF 460


>gi|288958788|ref|YP_003449129.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911096|dbj|BAI72585.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 413

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/346 (28%), Positives = 158/346 (45%), Gaps = 9/346 (2%)

Query: 141 KSATLLIALSISALSNFMLP----YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
               LLI + +  +S F L       +   + PV+V  +     +        A    T 
Sbjct: 69  PFDLLLIDIRMPHMSGFDLMERLKPVLGDDYVPVLVLTAQTDQETRRKSLELGANDFLTK 128

Query: 197 LSFFTYITYHLFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                 + + +               +  +L   +    +   +  + A + + AK  FL
Sbjct: 129 PFIAWELLHRVRNMVEIRKLYRRAAEQNRELECRVSARTAELSDALEAARKADRAKLDFL 188

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A MSHELRTPLN+I+GF++V+  E MG L +  Y EY+  I  SG+ LL ++N ILD +R
Sbjct: 189 AVMSHELRTPLNSIIGFADVLAGEGMGKLGHPDYLEYVKLIEESGRSLLTMVNNILDYTR 248

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
              G  E+ +S +++  ++  C  ML  +A  K + +  +  P+        +    ++L
Sbjct: 249 GSTGSIEIQDSDVNIPQLLTGCADMLAPKAAGKGLALAVRPCPAFRMRVDRRRLRE-MVL 307

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLL NAVKFT  GG V V V    G    ++++D+GPGI    +  +   F Q   ++  
Sbjct: 308 NLLDNAVKFTQPGGTVTVAVE-DRGAFVGLTVRDDGPGIPGDLMGRIFNPFTQAEHSLVR 366

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             +GVGLGLPI +     HGG   + S    G  V  +LP  R+L 
Sbjct: 367 RHEGVGLGLPIVRRFAELHGGGVELDSAPGRGTMVTILLPKERLLE 412


>gi|288555846|ref|YP_003427781.1| signal transduction histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547006|gb|ADC50889.1| Signal transduction histidine kinase [Bacillus pseudofirmus OF4]
          Length = 473

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 4/240 (1%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E     E+E+L K  FL+++SHELRTPL+ + G+SEV+          E  KE++  IH
Sbjct: 230 NEMANALEKEDLRKQTFLSNVSHELRTPLSYVKGYSEVLLE---DEQLREDQKEFVSIIH 286

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                L  L+N++LDL++I+  +  LS     L  ++ E        A++K IEI    D
Sbjct: 287 NESDRLSKLVNDLLDLAKIQGEQEVLSVEPTVLSALIDEAAASYLPSARKKGIEIITSSD 346

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
            S+ ++  D   ++QV+ NL+ N++     G  +  T+         I I D G G+++ 
Sbjct: 347 ESIIAL-IDPNRIKQVLHNLIQNSLHHCQSGDSITRTLTLERANICKIMITDTGAGMSKE 405

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  +   F +   A      G GLG+ I+++I+  H G     S+L +G  V   LP  
Sbjct: 406 ALVHLGERFYRTDDARTRKYGGTGLGVAISKAIIEKHNGTIHYESELGKGTTVTICLPIA 465


>gi|28871222|ref|NP_793841.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854472|gb|AAO57536.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1161

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 9/354 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++        +  + +   LL  L   +     L Y             +   +M   + 
Sbjct: 596 VLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAFLK 655

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEE 244
                 + A  L+++  +T    +   +    Q       I   E       + ++ +E 
Sbjct: 656 AFLTVCVFAGVLAWWVVLTRESRRVAQEESERQTSLLIQEIDAHEKTDQALQKAKEASEA 715

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR++  +SHELRTPLN+ILGF+++++ +T  P     +++ +  I RS  HLL+L
Sbjct: 716 ANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLLSL 772

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           IN +LD+++IEAG+ +L  + I   + + +   M    AQEKN+    +++  +   V  
Sbjct: 773 INGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFAGTAQEKNLGFRLELEGRMPMVVRG 832

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQ+++NLL NAV FT   G V + V +         I D+G GIA  +I  +   
Sbjct: 833 DEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDSGIGIAPEQIERIFQP 890

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           F +G         GVGLGL I + + A  GG   + S   EG      L  + V
Sbjct: 891 FERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 942


>gi|312891952|ref|ZP_07751455.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311295583|gb|EFQ72749.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1383

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 29/317 (9%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            + L    +        +        +    YI +   +                      
Sbjct: 805  LTLQISILPPFWKTGWAYFVYAVLVVGGLFYIRHRAIQKI------------------EL 846

Query: 232  KSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            K   +  R+ A+   E ++ K +F  ++SHE RTPL+ I+        + +   +    +
Sbjct: 847  KYALEREREEAQRMHELDMMKIKFFTNISHEFRTPLSLIMAPV----DKILKHTDKPEQR 902

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
              +  ++R+ + LLN++N++LD  ++E    +L      +I  ++E        A +KNI
Sbjct: 903  RQLQMVNRNARRLLNMVNQLLDFRKMEVQELKLHPRKGDIIGFIQEMAGSFSDVADKKNI 962

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYIS 404
                  +     V  D   + +++ NLLSNA KFT  GG V V +         +   I 
Sbjct: 963  GFVFDTEVEYLEVNFDHDKIERILFNLLSNAFKFTPEGGHVSVLLSTVERAGAEQWLEIK 1022

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            + D+G GIA  +   V   F Q  +      QG G+GL I +  +  H G+  + S+  +
Sbjct: 1023 VIDSGIGIALDKQEKVFERFFQNEVPGSMVNQGSGIGLSITKEFVKLHHGEITVESEPGQ 1082

Query: 465  GVEVIAILPNTRVLNFI 481
            G     +LP     +  
Sbjct: 1083 GSYFTVLLPLNLPADAA 1099


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F ++++HEL+TPL  I GF+E+++    G +  E  KE+ G I++   +L  LI+++
Sbjct: 325 REEFTSNVTHELKTPLTIISGFAELLKS---GNVEEEKIKEFGGIIYKQSTNLQRLIDDL 381

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L +S++EA    +    +SL ++  E    L +  + KN+ + +  D   + V    + +
Sbjct: 382 LKISKLEANDAVI-IEELSLDELGDEVCDDLAIEIKNKNLNLVKDFDRVKAKVNG--EMI 438

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           ++ ++NLL+NA+K+   GG +   +         + I DNG GI E  +  +   F    
Sbjct: 439 KEAMMNLLTNAIKYNRDGGEIEFKIA-KEDGFALVQISDNGIGIEEELLDRIFERFYVVD 497

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +        GLGL I + I+  HGG+  + S++ +G      LP  +
Sbjct: 498 NSRSKKISSTGLGLSIVKHIVEAHGGRIEVTSEIGKGSTFTIYLPLEK 545


>gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 933

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/275 (33%), Positives = 145/275 (52%), Gaps = 6/275 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+  +          +  ++ L   +    +     ++RA+  N AK  FLA MSH
Sbjct: 430 FLLGISRDITGQRRAEEELRRYREHLEDMIRERTAELAVAKERADAANQAKGAFLAHMSH 489

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ILG++++++        +  + + I  I RSG+HLL +IN+ILD++++EAG+
Sbjct: 490 ELRTPLNGILGYAQILK---CDKNLDRRHVDGITVIQRSGEHLLAIINDILDMAKMEAGK 546

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            EL+ S + L   +      ++++A EK +    ++ P+L  +V  DEK +RQV+LNLLS
Sbjct: 547 AELTLSDVPLEGFIYFIAETIRVKAMEKGLAFACELAPNLPAAVRVDEKRLRQVLLNLLS 606

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT   G V + VGW         ++D G GI E  +  +   F Q S A      G
Sbjct: 607 NAIKFTET-GSVRLRVGWMPPARLSFEVRDTGIGIHEARLGAIFRPFEQVSDARH-QIGG 664

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I++ ++   GG+  + S+   G      L
Sbjct: 665 TGLGLTISRQLLRLMGGEIRVDSRHGAGSAFSFEL 699


>gi|146343656|ref|YP_001208704.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146196462|emb|CAL80489.1| Sensor histidine kinase with a response regulator receiver domain
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 1124

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 165/379 (43%), Gaps = 18/379 (4%)

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
             R    V     G+      L +           +     L +  + AL+  M+     
Sbjct: 539 HARAQAQVSAALSGM------LPDALLARINSQLGHYVGVFLTSAGLVALTLGMIYLETS 592

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-D 223
            +       +S         L I     +   +++   +     ++       Q +    
Sbjct: 593 AALPGYRGIISDVLWKVFFALSI-----IIGVVTWLFVLAQQSRRAAEAETRRQTQLLIQ 647

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I   +   +     ++ AE  NLAKSR++  +SHELR+PLNAI G+++++E        
Sbjct: 648 EIDAHKRTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ---DTSL 704

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++ +  + RS  HL  LI+ ILD+S+IEAGR  LS   + L + + + + M +L+A
Sbjct: 705 APKPRDQVRVVRRSADHLSGLIDGILDISKIEAGRLYLSRDEVRLSEFLDQLVGMFRLQA 764

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             K ++   K    L   V+ADEK +RQ+++NLLSNA+KFT   G V   V + S     
Sbjct: 765 AAKGVDFVFKRPAVLPLVVYADEKRLRQILINLLSNAIKFTQE-GSVQFVVHYRSP-VAE 822

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D GPGI   ++  +   F +G++     + G GLGL I++ +    GG   + SK+
Sbjct: 823 FEVIDTGPGIQPDDLERIFAPFERGALGAAQPQTGTGLGLTISRLLAGVMGGDIKVESKV 882

Query: 463 REGVEVIAILPNTRVLNFI 481
             G      +  + V N  
Sbjct: 883 GTGSTFKVKILLSEVTNPT 901


>gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 673

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 264 TEQREIELAREQLLDSERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 323

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N      +  I  S +    LI+++LDLS +  G+ +L   ++ L + VRE +  
Sbjct: 324 EEGHPNYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALST 380

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A  K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ VT+     
Sbjct: 381 QELAADGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIER-DD 439

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S++D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 440 GHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 499

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 500 TSGGRGQGATFTVRLP 515


>gi|313122883|ref|YP_004033142.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279446|gb|ADQ60165.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 635

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 391 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 448

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 449 LLVLSRMDRGATKLEPEWVNFTDFVAHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 508

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M +VI N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 509 LWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 567

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 568 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 627

Query: 479 NF 480
             
Sbjct: 628 EE 629


>gi|291541287|emb|CBL14398.1| EDD domain protein, DegV family [Roseburia intestinalis XB6B4]
          Length = 891

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 177/444 (39%), Gaps = 33/444 (7%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPI--FPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           LFR   +L    + V  + T      I          L +       G K    D+    
Sbjct: 23  LFRFMSLLGTIAMAVGGVYTLAEGMEIKNVAALFAGALFMGML-FWAGNKFQQYDLCS-- 79

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                   ++     G+    L +    +   +         L   L   +L   +   +
Sbjct: 80  -------FILMSGLNGI---FLPVTFLRSGGLKS-----GMPLWFVLGFISLFFLLRGKS 124

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +       ++A +                 +    S        +  + + I    A   
Sbjct: 125 LAAGTVITIIADAYCFYT-----AYVHPERITYMESESVVYGDIIVSAVITIFLTCAFMF 179

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   E  +  +++ +         +SRFLA+MSHE+RTP+N I+G +E+   E     
Sbjct: 180 IQITLSEYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEMTLRE---EN 236

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++   E   +I  + + LL+LIN+ILDLS+IEAG+ E+  +     ++  E +    +R
Sbjct: 237 LSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWIR 296

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           A EKN+E    +   L   ++ DE  ++QV+ N+LSNA+K+T  G   + V    T    
Sbjct: 297 AHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGADE 356

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             +  ++ D G GI + ++  +  SF + +       +G GLGL I   ++   GGQ  +
Sbjct: 357 ILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTGLGLSICSQLVNLMGGQITV 416

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S  ++G      +P  +++N  P
Sbjct: 417 DSIYQKGSTFTITIP-QKIVNATP 439


>gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1141

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 17/265 (6%)

Query: 224 LIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +I   E   S     R++AE     N  K+ FLA+MSHELRTPLN+IL  ++ +     G
Sbjct: 470 IIDISERKLSELRL-REQAEQISRANRYKTEFLATMSHELRTPLNSILILADQLAENRQG 528

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L      E+   I+RSG+ LL LIN+ILDLS+IEAGR  L+   + + D++        
Sbjct: 529 NLT-AKQVEHATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQNFL 587

Query: 341 LRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---- 395
             A+ + +      + S   V   D   + Q++ NLLSNA KFT   G VH+ V      
Sbjct: 588 PVAENRQLTFQTTKEDSAGDVLITDATRLFQILKNLLSNAFKFT-DHGSVHLRVYQPQSV 646

Query: 396 ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                        +++ D G G+   ++  +  +F Q     K    G GLGL I++ + 
Sbjct: 647 PPGMDSLPQHTLAMAVTDTGCGMPSDKLDRIFEAFEQLEQGSKRQFGGSGLGLSISRQLA 706

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
              GG   +RS+L  G   +  LP 
Sbjct: 707 HLLGGTIDVRSELGLGSTFVLYLPV 731


>gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas
           arsenicoxydans]
 gi|133738580|emb|CAL61625.1| putative two-component sensor kinase (C part) [Herminiimonas
           arsenicoxydans]
          Length = 577

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 9/345 (2%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +++ LS+ A+    L          +    S   I  + +   ++  ++    S++  + 
Sbjct: 21  MVVVLSLCAVGAAALGLVYVQEISAIASVESRILIDGIFIKIAAVLSIIVAVSSWWVVLG 80

Query: 205 YHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                     L+ Q E     I   +         ++ AE  N AK+R++A +SHELR+P
Sbjct: 81  SEGRHLAQDDLNRQNELLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSP 140

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN+ILG+S+++             +  I  IHRSG+HLL L++E+LDL+RIEA R  L  
Sbjct: 141 LNSILGYSQILLKN---EHLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEP 197

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           + I L   + + + M++ +A+ K +++    +  +S  V AD K +RQ+ +NLL+NAV+F
Sbjct: 198 APILLSAFLEDLLSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRF 257

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V + V  +        + D G GIA  +   +   F +G+      E G GLGL
Sbjct: 258 T-DDGSVTLHVECSPA-SVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGL 315

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPEDN 485
            I + ++    G   + S   +G   I  LP T +     +P+ +
Sbjct: 316 AITEKLILLMNGSLNLVSMQGQGSTFIVRLPLTEITAFESLPQRD 360


>gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1136

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 14/283 (4%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            ++                     A   D + E +  ++     ++ AE  N AKS FLA
Sbjct: 569 GSVFPAALRLQRYPSRGDDARRYFAIVRD-VTEDKAIEADLRAAKEAAETANRAKSDFLA 627

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTPLNA++G +E+     +        ++ +     S   LL LIN+ILD+SRI
Sbjct: 628 KMSHDIRTPLNAVIGMTELTLDTPLSH----QQRDALETARESAASLLALINDILDISRI 683

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EA + EL+     L   +      ++ +A++K + +   I P     V  D   +RQ++L
Sbjct: 684 EARKLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVRLRQILL 743

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           NL+ N +KFT   G V + VG  +G+           ++ D G GI    +  +   F Q
Sbjct: 744 NLVGNGIKFTDQ-GSVSLIVGPDTGQAKPDGATAIAFTVSDTGIGIESERLEGIFDMFAQ 802

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
              +I     G GLGL I + +    GG  +  S+   G    
Sbjct: 803 ADASITRQYGGTGLGLAICRELARLMGGCIVAESRPGAGSRFR 845


>gi|160894764|ref|ZP_02075539.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50]
 gi|156863698|gb|EDO57129.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50]
          Length = 460

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 10/306 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             ++ +  +  +  + + +  ++   +    Y+T  + +   ++       DD+ A  E+
Sbjct: 158 TSSIVSVFLKGLPSMTVIMLVLVTIVVLISRYLTKSIVRPIGQMAKDLDHVDDINAYKEI 217

Query: 231 A---KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                ++ ++     E     +  F A++SHEL+TPL AI G+SE+IE    G   +   
Sbjct: 218 RPLIDTIREQHNDIMENA-QMRQEFTANVSHELKTPLTAISGYSELIEN---GMAADGDV 273

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + +  +IHR+   LL LIN+I+ LS ++      S   I L  + R  + ML L A++ N
Sbjct: 274 RRFATEIHRNSNRLLTLINDIIRLSELDVTENAPSMERIDLCAVARSNVDMLMLSAEKHN 333

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIK 406
           + +     PS   +  ++  M +++ NL  NA+++    G V VTV  +       + +K
Sbjct: 334 VTLKFSGQPS--YIMGNKMMMEELVYNLTDNAIRYNKPDGTVEVTVYSYEKDHSVVMKVK 391

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E  +  V   F +   +   +  G GLGL I + I+A H  +  I S+   G 
Sbjct: 392 DTGIGIPEEHLGLVFQRFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAKLDITSEPNVGT 451

Query: 467 EVIAIL 472
           E+    
Sbjct: 452 EITITF 457


>gi|309789804|ref|ZP_07684383.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228108|gb|EFO81757.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 381

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 157/396 (39%), Gaps = 27/396 (6%)

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            W   L        L   ++  V          ++    +  + L  +A     L  +  
Sbjct: 2   RWPHQLRWKLFFSHLVIVVIADVVLLATATFLASVGLVHSAPLTLGSAAAETGSLDPSAV 61

Query: 165 LSFFPV----------VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +   P+          ++     A+ +  V+ + ++  +   L   T ++  L +   + 
Sbjct: 62  IETPPLQQFQAVVQQSLLVSGFAALAAAVVVSLFVSRRIVEPLITLTSVSKRLAQGFYRE 121

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +  A  D++         L+D      ++    +   LA ++HELRTPL  I G+ E +
Sbjct: 122 RTRIASDDEIAQLSRSVNQLAD----ALDQTEQRRLALLADVTHELRTPLATIGGYMEGL 177

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P       E    I      L  LI ++  LSR+EAG+  +   +++L+ ++  
Sbjct: 178 LDGVVQPS-----HETFNLILHESNRLQRLIEDLELLSRVEAGQLPVVARSVNLVHLIEA 232

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +  +       + +  ++   L  VWAD   + Q+++NLLSNA ++T  GG V +   
Sbjct: 233 ICVQFEPIFSANQVRMGIEVPLRLPPVWADPDRLDQILINLLSNAYRYTPAGGEVVLRAW 292

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T+ +   + + D+G GIA   +P V   F +   +      G G+GL I + ++   GG
Sbjct: 293 ATTDKM-TVEVADSGVGIAAEHLPHVFERFYRVDKSRARQSGGSGIGLAIVRHLVDAQGG 351

Query: 455 QFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
              + S    +G      LP        PE  ++S+
Sbjct: 352 DISVWSAGKGQGTVFTFTLPLA------PESQNKSS 381


>gi|302877319|ref|YP_003845883.1| integral membrane sensor signal transduction histidine kinase
           [Gallionella capsiferriformans ES-2]
 gi|302580108|gb|ADL54119.1| integral membrane sensor signal transduction histidine kinase
           [Gallionella capsiferriformans ES-2]
          Length = 509

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 11/331 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           IA     L        +  + + ++  L     +++ +  +    ++    S    +   
Sbjct: 172 IASHRVVLDEARASQQINFATYLMLFILVCTVSLTVLLAYLISRSVIGPLQSLQQAMKDI 231

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTP 263
               +       +  D+      +   L +        AE  + AKS FLA+MSHE+RTP
Sbjct: 232 TNSGDFSRRLVVSSDDEAGDTARIFNELIESVQLAHVAAEAASRAKSDFLANMSHEIRTP 291

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N+I+GFSE+         + +  + ++  I  S   LL ++N+ILDLS+IE+GR  L  
Sbjct: 292 MNSIIGFSELALDNP----DPKDQQIFLSQILESSNMLLGILNDILDLSKIESGRMMLDV 347

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           ++    +++        LRAQE  +            V+  D   +RQ++  LL NAVKF
Sbjct: 348 ASFDFDELLGSIERSFALRAQEAGLGFTLLRLGESGRVFLGDVLRLRQILTILLGNAVKF 407

Query: 383 TAIG-GRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T+ G   + V              SI+D G G++   I  +   F Q   +I     G G
Sbjct: 408 TSQGETSLEVKQIRVPDGKVRLEFSIQDTGIGMSAETIKNLFQPFVQADNSITRRFGGTG 467

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           LGL IA+++     G+  + S+L  G     
Sbjct: 468 LGLVIARNLAQMMHGRITVESQLGVGSVFRF 498


>gi|240146132|ref|ZP_04744733.1| multi-sensor hybrid histidine kinase [Roseburia intestinalis L1-82]
 gi|257201731|gb|EEV00016.1| multi-sensor hybrid histidine kinase [Roseburia intestinalis L1-82]
          Length = 452

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 7/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L +    +L   ++ +D++ E +  +   ++  K AE  N AK++FLA MSHE+RTP+NA
Sbjct: 39  LNQQTGTLLLMLSDVEDIVKEEKEKQEQLEKALKMAEAANEAKTKFLAGMSHEIRTPMNA 98

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + +I        + E   +Y   +  + Q+LL L+N+ILD+SRIE+G  +L+  A 
Sbjct: 99  IIGLNSMIRSSL---DDREQVLDYTEKLDSASQYLLALLNDILDMSRIESGSMKLAIRAF 155

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
                     ++ + +A    +    +    +S V+  D   + Q+++NL++NAVKFT  
Sbjct: 156 EGDKFWDNVNMLAKAQAVMAGVGYSFERRKKISEVYIGDSTRLEQIMVNLINNAVKFTPK 215

Query: 386 GGRVHVTVGWTS-GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           GG V+V+V          ++  + DNG GIA+  +P V   F Q          G GLGL
Sbjct: 216 GGNVNVSVAEQETDGRVQLTAVVSDNGIGIAKDFLPKVFDIFTQEHEENTRVYGGSGLGL 275

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            IA++      G   + S   +G      
Sbjct: 276 SIARNYARMMDGDITVESAEGKGTVFTVT 304


>gi|92113190|ref|YP_573118.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
 gi|91796280|gb|ABE58419.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
          Length = 695

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 8/315 (2%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                       +  +          I        + +      +      L+       
Sbjct: 113 ALASVREQTRQGMLRVYVLLFVLMILIMLAGTYLVMALWREARSRARHGERLQRQSQELQ 172

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++AE  + +KS F+A MSHE+RTPLN ++G  +V+E E       E  +++   +  
Sbjct: 173 RAVQQAEAASQSKSEFMAIMSHEVRTPLNGVVGMLDVLEDEPC----QEKREQHFATLRE 228

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S   L  +IN++LD S+IEAGR +L  S   L  +V       Q R       I Q  D 
Sbjct: 229 STASLRAVINDVLDYSKIEAGRLDLEHSPFPLTRMVSRLAEGYQSRQTSDVSLIVQLGDD 288

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V  D   +RQV++NL+ NA KFT + G + ++V        +  ++D G GI +  
Sbjct: 289 LPPVVIGDATRLRQVLMNLMDNAFKFTQV-GSITLSVQSRKPATIFFEVRDTGVGIDKQV 347

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--- 473
              +   F Q   ++    +G GLGL I   ++   GG   + S    G      LP   
Sbjct: 348 QAALFEPFTQVDTSLSRRHEGTGLGLAICYRLVEAMGGHLELNSMPDLGSVFHFCLPLSA 407

Query: 474 NTRVLNFIPEDNHES 488
              V   + +D  E+
Sbjct: 408 AEGVSERLLDDPSEA 422


>gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
 gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
          Length = 613

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
 gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
          Length = 1400

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 11/272 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VI 274
               EK     E+E   +      ++ +E +  K++F A++SHELRTPL  I+G ++ ++
Sbjct: 181 RNITEKRLGEIEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVGPTDKLL 240

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + E +    +E  ++ +  + R+ + LL ++N +LD+SR+EAG+  L+ S ++L   V  
Sbjct: 241 KEENL----SENVRKDLDIVARNSRSLLKIVNNLLDISRLEAGKMNLNYSMVNLSQTVHL 296

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---- 390
                ++ A+EK+++              D   M++VI NLLSNA KFT  GG V     
Sbjct: 297 IASCFEILAREKSLDFSIITPSIPLMAAIDADKMQRVITNLLSNAFKFTPSGGSVKCILE 356

Query: 391 -VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
              +  T    Q I + D GPGI E     +   F Q          G GLGL I +  +
Sbjct: 357 KFDISPTVPGFQII-VSDTGPGIPEKLHEIIFERFRQVDGTNTRKHGGTGLGLSIVKEFV 415

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             HGG   I +  + G +    +P +  ++  
Sbjct: 416 TLHGGTVSIHNGSKCGAQFTLRIPLSPNMDEQ 447



 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 133/304 (43%), Gaps = 30/304 (9%)

Query: 202  YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            ++   L  +N  +     +      +L+      ++ R      N +K  F  ++SHELR
Sbjct: 701  FLQEELSSANTDLQELINQLTLKKRDLQALVGELEKERNLLNNTNKSKDEFFMNLSHELR 760

Query: 262  TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            TPLN ILG+ +++    +   ++ T +  +  I R       LIN++LD+S I   ++ L
Sbjct: 761  TPLNGILGWCQLLL-YDLDSSDDSTIRTGLQTIERCASSQNQLINDLLDMSLIIGDKFSL 819

Query: 322  SESAISLIDIVRECIIMLQLRAQEKNIEIF--QKIDPSLSSV----WADEKGMRQVILNL 375
                + L  +++  I  + + AQ K+I I    +  P    V      D+  ++QVI NL
Sbjct: 820  IMGEVDLPLLIQNAIASILVSAQSKHITIDTNIEEPPQDPQVLQNLRGDKSRLQQVIWNL 879

Query: 376  LSNAVKFTAIGGRVHVTVG----------------------WTSGRGQYISIKDNGPGIA 413
            LSN++KFT   G++ +                             R   ++I DNG GI 
Sbjct: 880  LSNSIKFTNENGKIEIHAKVLNQIPINELGFCSNPMFNPIQRQGDRWILLTISDNGKGIP 939

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
               +P V   F Q   +   +  G+G+GL I Q+I+  H G     S+   +G +   +L
Sbjct: 940  HQFLPNVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVFANSQGENKGSQFTVVL 999

Query: 473  PNTR 476
            P T+
Sbjct: 1000 PVTK 1003


>gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 702

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 5/263 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 293 TEQREIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 352

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N      +  I  S +    LI+++LDLS +  G+ +L   ++ L + VRE +  
Sbjct: 353 EEGHPNYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGA 409

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ K+  +   + P+   V  D   ++QV  NLLSNA+KFT   GR+ VTV     
Sbjct: 410 QEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEH-DD 468

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S++D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 469 GHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGA 528

Query: 459 RS-KLREGVEVIAILPNTRVLNF 480
            S    +G      LP  +    
Sbjct: 529 TSGGRGKGATFTVRLPEHQPDQA 551


>gi|206975846|ref|ZP_03236757.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217962958|ref|YP_002341536.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|222098942|ref|YP_002533000.1| sensory box histidine kinase yycg [Bacillus cereus Q1]
 gi|206745940|gb|EDZ57336.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217065919|gb|ACJ80169.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|221243001|gb|ACM15711.1| sensory box histidine kinase YycG [Bacillus cereus Q1]
 gi|324329416|gb|ADY24676.1| sensory box histidine kinase YycG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 613

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Citrobacter koseri ATCC BAA-895]
 gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
          Length = 948

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQC-DGDYLSIQVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|126730029|ref|ZP_01745841.1| sensory box sensor histidine kinase/response regulator [Sagittula
           stellata E-37]
 gi|126709409|gb|EBA08463.1| sensory box sensor histidine kinase/response regulator [Sagittula
           stellata E-37]
          Length = 653

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 177/466 (37%), Gaps = 28/466 (6%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
           +  ++T +  +  R   +  +  ++      +            IT+A    +  + ++ 
Sbjct: 21  EASLLTRYARARVRQFLLRQVPTVVGTVAVWYIVSPLAALYCFFITIAGETLDTLVLRRT 80

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWT--LLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +       V+  +                 +L L+         L            + 
Sbjct: 81  PSRLEAGKPVWREKRLTAFSAGVQSATIASCVLVLLAYAPTDEAALIALCFLMAAAVNAG 140

Query: 152 SALSNFMLPYAVFLSFFPVVVAL----------STQAIMSMHVLDISLAGMLATALSFFT 201
             +++  L     +    + + +          +      +H+L++ +   L  A   F+
Sbjct: 141 YVMTHHPLASWAKMGVLSLCIPIYLVTDTLTAGAFGLRQFIHLLEVIMLFYLTFAFVSFS 200

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
             ++    SN  +L   A + D         +     +++AE+   AKS FLA+MSHE+R
Sbjct: 201 VRSWRRRLSNEYMLMESAARQD------ATNAELLAAQRQAEQAAQAKSAFLATMSHEIR 254

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLNA++G S+++    +   + E    Y+  I  +   LL +IN++LD SR++A +   
Sbjct: 255 TPLNAVIGMSDLLAANDLDAKSAE----YVRTIRGASTSLLQVINDVLDFSRLDADQMSF 310

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
                +  + +     +L   A EK + I    D SL     ADE  +RQ+++NL+ NA+
Sbjct: 311 ESLPFAPSESIAAAARLLTPLASEKGLPIVLADDGSLPLRASADEGRLRQILVNLIGNAI 370

Query: 381 KFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFTA  G + VT             + + D G G+       +   F Q   A      G
Sbjct: 371 KFTAA-GEIRVTARAEPEGDGWRLVVLVSDTGIGVPPNRAEAIFEVFQQADAATTRRYGG 429

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKL-REGVEVIAILPNTRVLNFIP 482
            GLGLPI++++    GG   +       G      +   R     P
Sbjct: 430 TGLGLPISRALAQRLGGDLRLVPAQRGVGASFELTVHLDRAAAETP 475


>gi|222086817|ref|YP_002545351.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221724265|gb|ACM27421.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 1129

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/366 (26%), Positives = 163/366 (44%), Gaps = 14/366 (3%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
            T+V           I  +  L    +I A+    +  A   +   V   +         
Sbjct: 560 ATIVAKLATRLGRYGIAVALALTAVGAILAMIAHQVGSASPETAQVVDRTILIVFF---- 615

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
                 A +      F+         +  +           IA  +   +     ++ AE
Sbjct: 616 ----VFAVIAGVVCWFYVLAHDSRVVAEEESSRQNTLLLKEIAAHKKTDAALQSAKEAAE 671

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKSR++  +SHELRTPLNA+LG+++++E +   P      +  +  I RS +HL  
Sbjct: 672 AANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAP---RQSSLKVIRRSAEHLSG 728

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           LI+ +LD+S+IEAGR ++  + I++ D + + + M + +AQ K +    +   +L   V 
Sbjct: 729 LIDGLLDISKIEAGRLQVYSNEINIKDFLDQIVDMFRPQAQAKGLAFVYEPTAALPDYVR 788

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DEK +RQ+++NLLSNA+KFT   G V   VG+   +    +I D G GIAE ++  +  
Sbjct: 789 TDEKRLRQILVNLLSNAIKFTDT-GSVRFEVGYR-SQVATFTIADTGRGIAEKDLTRIYE 846

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +G         G+GLGL I Q +    GG+  + S+  +G      L  + VL  + 
Sbjct: 847 PFQRGEAESIRPMPGLGLGLTITQLLTNTLGGEIAVVSEKDKGSTFKVRLMLSAVLRPMK 906

Query: 483 EDNHES 488
               E 
Sbjct: 907 PPAQEQ 912


>gi|28377005|ref|NP_783897.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254555221|ref|YP_003061638.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300769136|ref|ZP_07079025.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28269836|emb|CAD62733.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254044148|gb|ACT60941.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300493376|gb|EFK28555.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 624

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 8/237 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           + +F++++SHELRTPL ++  + E +        + E    ++         ++ +INE+
Sbjct: 382 RKQFVSNVSHELRTPLTSLRSYIEALSDGAW--KDPEVAPGFLKVTQEETDRMIRMINEL 439

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPSLSSVWA 363
           L LSR+++G   +    +++ ++    +    +  ++ +       I ++       V  
Sbjct: 440 LSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEI 499

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     QV+ N+++NA+K++  GG V   +  T  +   ISI D G GI   ++  V   
Sbjct: 500 DTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQ-VIISISDQGLGIPRADLGHVFDR 558

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A   A+ G GLGL I++ ++   GG+  + S   +G      LP       
Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYEPYEEE 615


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S F+A++SHEL+TPL +I GF E ++      ++  T   ++  I      L  LI++
Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           IL LS +E  +  L    + + D+ +E   + Q  A EKNIE+  K D    S+ +++  
Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV LNL+ NA+K+T   G V V V         I + DNG GI + ++  +   F + 
Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL I + I+ +  G   ++S+L  G E I  +
Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422


>gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC
            51142]
          Length = 1317

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG-------------PLNNETYKEY 290
            E    K  FL+ +SHELRTPL +I+GFS +I  +                    E  K+ 
Sbjct: 1072 EMERMKRNFLSMVSHELRTPLTSIVGFSSLIRDKLHAVVFPQIQEKDKKVDKAVERIKQN 1131

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  +    + L  L+N+ LD+++IE+G+  LS   +    ++   I       ++ ++E+
Sbjct: 1132 LDIVVFEAERLTKLVNDFLDMTKIESGKITLSLFPVKPSTVLTWAIASTAPLFEDSSVEL 1191

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNG 409
             +     L ++  DE  + QV +NL+SN  KFT  G    VT  G        ISI D G
Sbjct: 1192 IEDFPEELPTILGDEDRLIQVFVNLISNGFKFTETGS---VTCHGEVDHDNLLISITDTG 1248

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GIAE +   V   F Q    + +  +G GLGL I++ I+  HGG+    S+ ++G    
Sbjct: 1249 IGIAENDYSKVFEPFQQVGNILTNKPKGTGLGLSISKQIIEQHGGKIWFTSERQKGSTFF 1308

Query: 470  AILPNTR 476
              LP  +
Sbjct: 1309 VSLPLAK 1315


>gi|70726426|ref|YP_253340.1| respiratory response protein SrrB [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447150|dbj|BAE04734.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           haemolyticus JCSC1435]
          Length = 585

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 116/232 (50%), Gaps = 3/232 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     E  ++ +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PEEIRDSLSIVLDETKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  +  + +A++  + +  + +        D
Sbjct: 414 VNELLNVARMDAEGLTVNKEKQPIKPLLSKMQMKYRQQAEDLELNMSLEPNIDDELWEYD 473

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV+ NL+ NA ++T  G  + +T   T    Q + IKD G GI+   +  V   F
Sbjct: 474 ADRIDQVLTNLIDNATRYTQPGDSISITTT-TDDSYQTLHIKDTGSGISPEHLELVFDRF 532

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   +    +QG GLGL I + I+  HGG   + SK+ +G   I  LP  +
Sbjct: 533 YKVEASRTRGKQGTGLGLFICKMIIEEHGGTIKVESKVNKGTTFIIKLPKPK 584


>gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 641

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 148/286 (51%), Gaps = 10/286 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  ++ E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   S     +S+ D G GIA   I  +   F +       + +G
Sbjct: 530 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIP 482
            GLGL +++S++    G   +++   EG   I  LP   V     P
Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPLVLVNAPTAP 632


>gi|295690986|ref|YP_003594679.1| histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295432889|gb|ADG12061.1| histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 842

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 128/272 (47%), Gaps = 12/272 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       ++RAE  N AKS FLA MSHELRTPLN +LG ++ +  E + P     
Sbjct: 442 HQRRGSQRLKGAQERAEAANQAKSAFLAVMSHELRTPLNGMLGLAQALRTEDLTP----Q 497

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E I  I  SG  LL L+N+ILDLS+IEAG+ E++ +   L+      +   Q  A+EK
Sbjct: 498 QREQIDLILDSGDTLLVLLNDILDLSKIEAGKLEIAPTTGDLVGSCARLVGGYQPTAREK 557

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS 404
            + +  +++      +  D   +RQ + NL+SNA+KFT  G   V +           + 
Sbjct: 558 GVVLSFRLESEAPGPLMFDGVRVRQCLTNLVSNALKFTTEGKVEVGLACYPEDDGRVRVR 617

Query: 405 --IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D G G+++  I  + + F Q   +      G GLGL I + ++    G+  + S+ 
Sbjct: 618 LRVSDTGIGMSQETIAKLFSPFTQADASTTRNFGGTGLGLNITRRLVKMMHGEIKVESEE 677

Query: 463 REGVEVIAIL---PNTRV-LNFIPEDNHESTQ 490
             G      +   P   V      ED+ E+ +
Sbjct: 678 GRGSVFTIEMLVDPAEPVEAPTGAEDSAEAPE 709


>gi|147674610|ref|YP_001217001.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|146316493|gb|ABQ21032.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|227013361|gb|ACP09571.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 514

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 73  PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 132

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 133 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 187

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 188 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 247

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 248 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 305

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 306 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 365

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 366 TFTLYIPLQSRLKNIKPSTSSSQQI 390


>gi|294010920|ref|YP_003544380.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292674250|dbj|BAI95768.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 1048

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/440 (23%), Positives = 177/440 (40%), Gaps = 22/440 (5%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK-KVMNSDIKIG 101
           ++      I      + A +  W T    +    +  LA       L +     SD+   
Sbjct: 462 DARAVSPIIGLATTFIAAPLLAWATGGRYYLARPVDILAPQEHRCILCENSFEPSDMAHC 521

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLT---LVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
            VY   I  L   +                        +  +    ++    +  L  + 
Sbjct: 522 PVYQGNICSLCCTLEARCHDACKPPQSWTAQLAQAMGRIVPWTLNDIVYLRIVRFLGAYG 581

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   +      V    S         +   L   L   L    + T++L  S     + +
Sbjct: 582 LTATIISVVLAVTYYQSVGQGSDGRTVARILWTTLGGMLIVGIFPTWYLVLSRESQRAAE 641

Query: 219 AEKD-------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            E D       D I       +     ++ A+  NLAKSRF+  +SHE+RTPLN I G++
Sbjct: 642 EESDRQTSMLVDEIEAHARTDAELQRAKEAADAANLAKSRFIVGISHEIRTPLNTISGYA 701

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++        +     + +  I RS  HL +LI+ ++D+SRIE G   +  + ++L D+
Sbjct: 702 QLL------DKDPAHLADAVRVIRRSATHLTDLIDGLVDVSRIENGSVRIQRAPVNLHDL 755

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + +   M +L+A  + I+      P L   V++DEK +RQ+++NL+SNA+K+T  G    
Sbjct: 756 LHQLGDMFRLQAAARGIQFSHSRAPHLPQWVYSDEKRLRQILINLISNAIKYTPQGSA-S 814

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           + V W +       IKD+G GIA  ++  +   F + +      + GVGLGL I + +  
Sbjct: 815 LAVHWRNP-VAEFEIKDSGVGIAADDLKRIFEPFERINAV--PGQPGVGLGLTITRLLAD 871

Query: 451 NHGGQFLIRSKLREGVEVIA 470
             GGQ  + S+   G     
Sbjct: 872 IMGGQVTVESRPGAGSVFRV 891


>gi|293391415|ref|ZP_06635749.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951949|gb|EFE02068.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 615

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 157/337 (46%), Gaps = 9/337 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    ++  L    I+   V    + G+++      FFT +   L  S
Sbjct: 24  SLLGVMVLAVLALCTQILLSLLVMGKILWADVARSIVFGLISAPFVIYFFTVLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +     +    + E   A+    E     E+ N  K+  + ++SHELRTPLN I+G 
Sbjct: 84  RQALSCSVEDLRREVQERVSAEKKLSEALDNLEKINRDKTTLMTTISHELRTPLNGIIGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S ++  E      +E  + Y+  I+ S   L ++ ++I+DL +I+A R EL+  A  L  
Sbjct: 144 SRILLEE----NPSERQQNYLKTINSSALSLAHIFSDIIDLEKIDAKRIELNRKATDLYA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +      L  +EK+++      P+L   +  D   + QV+ NL++NAVKFT   G V
Sbjct: 200 LLNDIANFALLMTEEKHLQFQLVCPPTLPNWLMLDGVRLNQVLWNLINNAVKFTQQ-GSV 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++V  T+     + + D G GIAE ++  +   + Q   +  +   G G+GL ++++I 
Sbjct: 259 TLSVEQTAEEEFALRVTDTGIGIAEQDLQKIFELYYQA-GSDANKSLGSGIGLSVSKTIA 317

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              GG   + S++ +G   +      + +  + ED H
Sbjct: 318 QLMGGDLTVSSEVGKGSTFLFTFKARQAIKPVEEDEH 354


>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 999

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 2/243 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N  KS F++++SHELRTPL +I G   +I       L ++T K  +   HR+ Q L +
Sbjct: 501 RMNKMKSEFISTVSHELRTPLTSISGALGLIIGSRFEELPDKTQK-LLKTAHRNNQRLSH 559

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+ +I AG+         L  +V + I   Q     +++ I    D +   V  
Sbjct: 560 LINDLLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLICDANTVLVHV 619

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + QV+ NLLSNA+KF++  G+V V V  T      +S+ D GPGI +     +   
Sbjct: 620 DSQRLLQVLANLLSNAIKFSSDHGQVIVEVT-TDNGKAIVSVIDQGPGINQAFRERIFQR 678

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q   +   A++G GLGL I++ ++   GGQ    S + +G     +LP    L  +  
Sbjct: 679 FAQADSSDTRAKEGTGLGLAISRELIERMGGQIDFESTMGKGSRFFFVLPLVSPLCTLKS 738

Query: 484 DNH 486
           D++
Sbjct: 739 DSN 741


>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 961

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|182414886|ref|YP_001819952.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842100|gb|ACB76352.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 689

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 8/269 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    ++   + +  AE  + AK  FLA++SHELRTPL  +L  ++++E E   P   
Sbjct: 295 LTERRRVEAELRQAKDDAERASRAKDEFLAALSHELRTPLTPVLMMTQMLEQERSFP--- 351

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM-LQLRA 343
              ++ +  I R+ +  + LI+++LDL+RI  G+  ++E  + +  ++++ I +      
Sbjct: 352 PEVRDDLRTIRRNVELEMRLIDDLLDLTRITRGKLRMNEEIVDVHRVLQDAIKIGCDDMC 411

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +K + +  + + + S++  D   + QV  NL+ NAVKFT   G + +     S     +
Sbjct: 412 SQKRLRVRCEFEANRSAMRGDTARLGQVFWNLIKNAVKFTPEDGAITLRTRNPSPERLEV 471

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
            + D G GI    +P +  +F QG   I     G+GLGL I ++++  H G  + RS+  
Sbjct: 472 RVADTGIGIEASVLPQIFNAFEQGGAHITRRFGGLGLGLAICRALVELHHGTIVARSEGP 531

Query: 463 REGVEVIAILPN---TRVLNFIPEDNHES 488
             G E I  LP        +  P    ES
Sbjct: 532 GHGAEFIVELPTCPDATAQDVEPMAATES 560


>gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 783

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 152/285 (53%), Gaps = 7/285 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            F+  +     +     L   ++    I +   A++     R+ AE  + AKS FL+ MS
Sbjct: 354 LFWANVVITAQRDASGTLRGFSKITRDITDRRNAEAALRTAREEAENASRAKSEFLSRMS 413

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+ILGF++++E++   P      +     I R+G+HLL LINE+LD++RIE+G
Sbjct: 414 HELRTPLNSILGFAQLLEMDRGTPAQQAQVRH----ILRAGRHLLGLINEVLDIARIESG 469

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376
           R  LS   + L  +++E  ++L  +A   +I +    + P+   V AD + + QV+LNLL
Sbjct: 470 RLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPAELCVQADRQRLVQVLLNLL 529

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+K+   GG V V V         +S+ DNGPGIA  ++  +   F +   A  S  +
Sbjct: 530 SNAIKYNHPGGHVEVRV-QADSDTVTLSVIDNGPGIAAEDLERLFIPFERLGAA-ASEVE 587

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL +++S++    G   + S   EG      LP  +V + +
Sbjct: 588 GTGLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPRAQVHDGL 632


>gi|90022618|ref|YP_528445.1| two-component hybrid sensor and regulator [Saccharophagus degradans
           2-40]
 gi|89952218|gb|ABD82233.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1132

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 163/369 (44%), Gaps = 18/369 (4%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L    +       ++    L +  +++ +   ++   +      +   L         +L
Sbjct: 553 LPSFASNYLNIRLVHFVLLLTLVGAVTGVLLALVYTNIKTDSLTINQLLEATLWKVFFIL 612

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEE 244
            I      A  + +   + +       +    Q  K    I   E       + +++AE 
Sbjct: 613 TIV-----AGVICWLFVLAHQSQIVAQEESQTQTRKLVQEIEAHEKTDLKLQKAKEQAEA 667

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+L  +SHELR+PLN +LG+++++E   M    +E  +  I  I RSG+HL +L
Sbjct: 668 ANNAKSRYLTGISHELRSPLNTVLGYAQLME---MDSALSEANQNKIAVIKRSGEHLADL 724

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWA 363
           I  +LD+S+IEAGR E+  + I    ++ +   M  L+AQ+K +    +   P  ++V  
Sbjct: 725 IEGLLDISKIEAGRLEIQRNTIQFKSLLGQLEKMFLLQAQDKGLTFTCERLSPMPATVMG 784

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQ+++NLLSNA+K+T   G V  ++ +   +     I D G GI E E   +   
Sbjct: 785 DEKRVRQILINLLSNAIKYT-EHGEVKFSINYR-NQVAEFKISDTGVGINEDEYERIFKP 842

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +       A  G GLGL I + +    GG   +      G      L  +RV      
Sbjct: 843 FERVRRPGSPAVPGTGLGLTITRLLTDIMGGDISVERNPNGGSIFTVWLMLSRV------ 896

Query: 484 DNHESTQYK 492
           D  ++ Q K
Sbjct: 897 DTPKTAQVK 905


>gi|261493613|ref|ZP_05990133.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495451|ref|ZP_05991899.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308956|gb|EEY10211.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310795|gb|EEY11978.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 616

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 13/320 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDI----SLAGMLATALSFFTYITYHLFKSNV 212
             L     ++   +++  S   +    V+ +    S+A  L +A     + T  + K  +
Sbjct: 22  ASLLGFFMVALSAILIQSSLTYLFIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEI 81

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L  +    DL    E    L      + E+ +  KS  +A++SHELRTPLN I+G S+
Sbjct: 82  SRLKLEKAVRDLEELREQDAYL----NAKLEKNSRDKSILMATISHELRTPLNGIIGLSQ 137

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  +       E  +EY+  I+ S   L ++  +I+DL +I++ R EL    +    ++
Sbjct: 138 ILLDDK----TTEKQQEYLKTINMSATALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLI 193

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +        A  K I    K  P L   ++ D   + Q++ NL+SNAVKFT   GR+ +
Sbjct: 194 HDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQILWNLISNAVKFTPASGRILL 253

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +          ++ D+G GI E +   +   F Q   + +   QG G+GL +++ I   
Sbjct: 254 EIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKL 313

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG  ++ S+  +G      
Sbjct: 314 MGGDLVVASQENQGSTFTLT 333


>gi|256004534|ref|ZP_05429513.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991539|gb|EEU01642.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940005|gb|ADU74039.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 504

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELE 277
           E+ D+ +E E+ +          E +NL   R  F+A++SHELRTP+ +I GF E I   
Sbjct: 246 ERLDISSEDEIGELARSFNNMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILD- 304

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G +  E  K+Y+  +    + L  L  ++LDL+++EAG   ++    ++ +++R CII
Sbjct: 305 --GTIPPEKEKDYLLIVRDEIRRLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCII 362

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            L+    +K+IE+    +     V AD   + +V++NL+ NAVKF    G++ V+   + 
Sbjct: 363 KLENFITQKDIEVEANFEEEDMYVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTS-SY 421

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++DNG GI   EI  +   F +   +    + G GLGL I ++I+ +H  +  
Sbjct: 422 KNKVLVCVEDNGIGIDRNEIDLIWERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIW 481

Query: 458 IRSKLREGVEVIAIL 472
           + S++ +G +    L
Sbjct: 482 VESEVGKGTKFYFTL 496


>gi|317471316|ref|ZP_07930675.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901209|gb|EFV23164.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 640

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              A+ F T +        + ++   AE           K+ ++E  K AE+ NLAKS F
Sbjct: 81  TVAAVLFITALIMGFSLVYIHLIRRNAELLA------AEKNRAEEAFKHAEKANLAKSEF 134

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L+ MSHE+RTP+N I+G + +I  + +   N+    + +  I  S +HLL LIN++LD+S
Sbjct: 135 LSRMSHEIRTPMNGIIGMT-LIAGQNL--QNSAKISDCLKKISLSSKHLLALINDVLDMS 191

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371
           +IE+G+ E+          +     +   +A  K +     +   +   +  D   + Q+
Sbjct: 192 KIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKKLNFDTILIGEVREELIGDSLRLNQI 251

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           I NLLSNA+KFT  GG V + +               ++D G G+A   +  +  +F Q 
Sbjct: 252 ITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFRFQVEDTGCGVAPENMEKIFNAFEQE 311

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +     G GLGL I++   +  GG  ++ S++ +G    A +P
Sbjct: 312 TSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEVGKGSVFTADIP 357


>gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 525

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/228 (40%), Positives = 140/228 (61%), Gaps = 1/228 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK+RFLA++SHELRTPLNAILGFS+V+  E  G L N+  +EY+  IH+SG HLL+++
Sbjct: 237 NDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N +LD+S+IEAGRYEL      + + +  C  ML  +A+EK + +  ++  S+  + AD+
Sbjct: 297 NTMLDMSKIEAGRYELLREPFRVAEAIAACEAMLSHQAREKGVRLASRVTRSVGEINADQ 356

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + ++Q+++NL+ NA+KFT  GG V V      G    +++ D G GIA  ++  +   F 
Sbjct: 357 RAVQQILINLVGNAIKFTDRGGLVTVDAAR-EGALLKLTVSDTGIGIAADKLKMLGQPFV 415

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q         +G GLGL + + +   HGG   IRS   EG EV+  +P
Sbjct: 416 QIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTEVVVSIP 463


>gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 823

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 170/451 (37%), Gaps = 24/451 (5%)

Query: 45  LFRVSPIL--PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           + R + I    L + + A     F          L  LA YA  +              +
Sbjct: 155 VMREAVIRQEVLMLAMFAVAVVIFYALVSGIARPLAALAEYAVKIRDHDFSATPPPASDD 214

Query: 103 VYVWRIWLL------VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
                   +      +  +   L   +         +  ++           L +     
Sbjct: 215 EVGVLARAMGSMAGQLSVLVSNLKQAVADTTRELNDSLAHIQAIIDNLADGLLVVDDAGR 274

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L     L+ F +         +       ++A + A+ LS        +  S      
Sbjct: 275 ATLHNPALLAMFGLTGTDPAGRWV-RDAFPPAMAALAASCLSDKACPETEVALSGGGTGK 333

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A    L  +   A  L        +E +  K+ F++++SHELRTPL ++LGF+++I  
Sbjct: 334 VVATSFRLPGQARTAVILLVRDVTVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRR 393

Query: 277 ETMGPLNNE-------------TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           + +  +                  +E +  I   G+ L  L++++LD++++E+GR E   
Sbjct: 394 KFLELVVPALPPGDARVARGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDM 453

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +SL  +    +      A  K + +   I   L +V AD   + QV+LNL+ NAVKFT
Sbjct: 454 EPVSLAAVADHAVKAAAPLAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFT 513

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V ++          +++ D+G GIA  ++ T+   F Q    +    +G GLGLP
Sbjct: 514 -TSGWVRLSAVAV-DGEVRVAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLP 571

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I + I+  HGG+    S   +G     ILP 
Sbjct: 572 ICRQIVERHGGRIWAESVPGQGSVFRFILPA 602


>gi|72384217|ref|YP_293571.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72123560|gb|AAZ65714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 404

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/258 (35%), Positives = 140/258 (54%), Gaps = 9/258 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + +  AE  N AKS FL+SMSHELR PLNAILGF++++  E+  P    + +  I 
Sbjct: 11  EEQKQAQAGAESANRAKSEFLSSMSHELRNPLNAILGFAQLMSSESPPPSP--SQQASID 68

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I ++G HLL LINE+LDL++IEAG+  LS   +S++DI+ EC  ML+ +A ++ + +  
Sbjct: 69  QILKAGWHLLELINEVLDLAKIEAGQASLSPEPVSVVDILHECHAMLEQQALKRAVCMRF 128

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
            +      V AD   ++Q++LNLLSNA+K+    G   V V  T G    +S++D G G+
Sbjct: 129 PLLDLPYFVRADRTRLKQILLNLLSNAIKYNRDQGTAEVQV--TKGDRIRVSVRDTGAGL 186

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A   +  +   F +       + +G G+GL +A+ +    GG   + S +  G      L
Sbjct: 187 APDRLAQLFQPFNRLGH-EAGSVEGTGIGLVVAKRLAELMGGTIGVESTVGVGSVFWVEL 245

Query: 473 PNTRVLNFIPEDNHESTQ 490
           P  R     PE   ES +
Sbjct: 246 PVAR----APEMTGESAE 259


>gi|261406014|ref|YP_003242255.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282477|gb|ACX64448.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 477

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               ++ F+A++SHE+RTPL+ + G+SE +        + E  +E I  IH     +  L
Sbjct: 240 LEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESRELIQVIHEESLRMGRL 297

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA- 363
           + ++LDL+R+EAG  ELS   +   ++         +RA+E++I++      S   + A 
Sbjct: 298 VKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDIDLQLNKLHSNLQLEAA 357

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTV 420
           DE  + QV+ NLL NA + T  G ++ +T      ++     + + D G GI   ++P V
Sbjct: 358 DEDKLEQVLTNLLDNAFRHTPSGKKIQITADRIALSNTEALQVKVCDQGVGIPPEDLPFV 417

Query: 421 LTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A    E  G G+GL I ++I+  H G     S++ +G      +P  
Sbjct: 418 FERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTVFTMTIPTK 473


>gi|84501121|ref|ZP_00999356.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84391188|gb|EAQ03606.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 346

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A+LGF E +        +    + ++G + R    + 
Sbjct: 110 EQAGQMRRDFVANVSHELRTPLTALLGFIETLR--GPASKDPAAQQRFLGIMDREAHRME 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+EA       + + ++ I+      L+  A E  +   +  D +   V 
Sbjct: 168 RLVRDLLSLSRVEAEERVRPVTRVDIVAILESVQKSLEPLAAEAGVAFSRIDDGTPIHVP 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGE 416
            DE  +RQV  NL+ NAVK+ A G RV VTV  +       G G  ++++D GPGI E  
Sbjct: 228 GDEDQLRQVFTNLIENAVKYGARGERVEVTVHLSEAVPSLRGPGVEVTVRDFGPGIEEIH 287

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IP +   F +          G GLGL I + I+  H G+  I S+  +G   I  LP+ 
Sbjct: 288 IPRLTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIESEPGQGCRFIVTLPHE 346


>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
          Length = 1016

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 201 TYITYHLFKSNV--KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            +    L   N+    ++   +   L  +     + +   ++ AE+ N AKS F+++MSH
Sbjct: 140 AFTANRLEVLNLLSTQIAVSFQNARLFLQSNHLANQAFLAKEEAEKANKAKSDFISNMSH 199

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN I+G  E+++   +        KE +    +S + LL ++N ILDLS++E G+
Sbjct: 200 EMRTPLNHIIGSLELLKEFPLTT----DQKELLNISQQSSESLLFMVNNILDLSKVEQGK 255

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLL 376
             L+ S  +L+  + + I  +   A +K + +     P  S   V  D   +RQ+++NLL
Sbjct: 256 TVLNLSIFNLVSFLEDSIGAIAPNAHQKGLMVGLYSTPCSSSIPVIGDVNLLRQILVNLL 315

Query: 377 SNAVKFTAIGGR-VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNA+KFT+ G   + V+V        Y   I + D+G GI   +   +   F Q    + 
Sbjct: 316 SNAIKFTSKGEVFIKVSVSPNLNNTSYSTQIEVTDSGIGIKPKDFDKLFQRFSQLDTGVN 375

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIR 459
            A  G GLGL I + ++   GG   IR
Sbjct: 376 RAYDGSGLGLSICKQLVELMGGHIGIR 402


>gi|168334021|ref|ZP_02692240.1| integral membrane sensor signal transduction histidine kinase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 453

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 131/324 (40%), Gaps = 15/324 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            + +    V +      +  +      L+   +      ++         +K L    E+
Sbjct: 130 ILGVVLLSVNIDDVYLLLEEVSTQIYVLSLFTSVLTGLLSFFVSAFXTRPIKELMSSVEE 189

Query: 222 DDLIAELEV-----AKSLSDETRK------RAEEENLAKSRFLASMSHELRTPLNAILGF 270
                  E         +++  +       + +  +  +  F++++SHEL+TPL +I   
Sbjct: 190 VTNGRMDEKIIIKGRSEMAELAKAFNLMTAKLQRVDETRQDFVSNVSHELKTPLASIKVL 249

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+ +  +   P+  E Y+E+  DI+     L  +IN++L L ++++ +  L+    +L  
Sbjct: 250 SDSLINDKNTPI--EMYQEFFLDINHEVDRLNTIINDLLSLVKLDSNKLHLNLEETNLNQ 307

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +    +  L   A +K I +  + +  +  +  D   +   I NL+ N +K+T   G V 
Sbjct: 308 LTNAILKRLAPLATQKAISLVYESERDI-KIEVDPLKLTLAISNLIENGIKYTPEHGEVS 366

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V +        YI ++D G GIA  E+P +   F +          G GLGL I    + 
Sbjct: 367 VIIK-EDSNNAYIIVQDTGIGIANDELPKIFERFYRTDKTRNRETGGTGLGLSITYRTVI 425

Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474
            H G   + S+  +G + I  LP 
Sbjct: 426 MHKGSINVTSEEGKGSKFIVQLPL 449


>gi|56696820|ref|YP_167182.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678557|gb|AAV95223.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 348

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 8/238 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL AI+GF E +        +      ++G + +    + 
Sbjct: 113 EQAGQMRRDFVANVSHELRTPLTAIMGFIETLR--GPARNDPAAQDRFLGIMEQEAGRMN 170

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L L+R+E+        A+ L   +   +  L+  A E  +E++     +   V 
Sbjct: 171 RLVGDLLSLNRVESEERVRPRGAVDLSGQIASTLNSLRPLAAEAGVELYFTGPETPVIVP 230

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGE 416
            DE  +RQV+ NL+ NA+K+   GG V VT+               I + D G GI    
Sbjct: 231 GDEDQIRQVLTNLIENAIKYGGSGGEVRVTLSEAERDPAVRGPAARIQVSDKGAGIDAVH 290

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P +   F +        + G GLGL I + I+  H G+  + S L  G     ILP 
Sbjct: 291 LPRLTERFYRADNHRSRQKGGTGLGLAIVKHIVTRHRGRMRVESTLGSGTTFTVILPK 348


>gi|319786002|ref|YP_004145477.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464514|gb|ADV26246.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 964

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPLN I+   ++I   T+ P      ++ +   H S   LL ++++ILD
Sbjct: 111 EFLATMSHEIRTPLNGIIPMLDLIGHGTLAP----DQRDMLHTAHESSLQLLRIVDDILD 166

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMR 369
            S++EA R EL  +  +L + +   + +++  A++K + +   +DP++   V  D   +R
Sbjct: 167 YSKLEANRLELEITTFNLREPLDAMLQLMRRPAEDKGLRLELDLDPNVRLPVRGDPVRLR 226

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFG 425
           QV+ NL+ NAVKFT  GG + + V               ++D G GI       +  +F 
Sbjct: 227 QVLGNLVGNAVKFTERGG-ITLVVRRLGETPVQHLLRFEVRDTGIGIDADSQARLFRAFS 285

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           Q   +      G GLGL I + I+   GG+  + S+   G      +P  +V+
Sbjct: 286 QADASTTRLYGGTGLGLAICKRIVDLMGGRIGVESEPGRGSTFWFEIPLLKVV 338


>gi|220929081|ref|YP_002505990.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999409|gb|ACL76010.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 594

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHE RTPL  I G  E +   T+   N E  + Y G +    + L 
Sbjct: 367 ERLEQLRKDFVANVSHEFRTPLTVIKGSIEALIDGTID--NKEDIERYYGRMLSETKSLQ 424

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L+LSR+++G+  ++   + +  ++ +    +Q  A  K I I       + +V 
Sbjct: 425 RLVGDLLELSRLQSGKISVNNELVHIPSLLSDITKSMQTIAIMKEISIVYTPINDVPAVS 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   +RQ+ +  + NA+K++     +H+     S     ISI+D+G GI+E E+P V  
Sbjct: 485 GDYDRLRQLFVIFIDNAIKYSPQKTEIHIRAAVKS--TLEISIEDHGYGISEEELPYVWD 542

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   +      G GLGL IA+ ++  H G  +I+S L +G  V   LP  +
Sbjct: 543 RFYKTDKS--REGGGTGLGLAIAKHLIKLHKGSVIIKSSLGKGTTVTVSLPFAK 594


>gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 562

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 144/245 (58%), Gaps = 5/245 (2%)

Query: 232 KSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           ++   + R   + AEE+  AKS+FLAS+SHELRTPLNAI+GFS+V++    GPL    Y 
Sbjct: 281 QAALTQARHDREAAEEDARAKSQFLASVSHELRTPLNAIIGFSDVMKARLFGPL-PARYA 339

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY   IH SGQHL+ LI ++LD+S+IEA RYEL      + ++V     M++L+A+E  I
Sbjct: 340 EYADLIHESGQHLMELIGDVLDMSKIEADRYELVRETFDIGEVVNLSAKMMRLQAEEAGI 399

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +  K       V  D K +RQ++LNLLSNAVKFT  GG + V +   SG    +++ D+
Sbjct: 400 NLKIKRHDGPLLVDGDRKALRQILLNLLSNAVKFTPKGGAIVV-MARASGGQLVMAVGDS 458

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   + Q + A    ++G GLGL + +++   HGG   I S+  EG  V
Sbjct: 459 GVGIDPEETARLGQPYQQAANARDIEKRGTGLGLSLVRALSELHGGSMNIASRKGEGTTV 518

Query: 469 IAILP 473
              LP
Sbjct: 519 TISLP 523


>gi|300811608|ref|ZP_07092088.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497403|gb|EFK32445.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 635

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            + +F++++SHELRTPL ++  + E +        + E   +++    +  + ++ ++N+
Sbjct: 391 EQRQFVSNVSHELRTPLTSVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVND 448

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN---------IEIFQKIDPSL 358
           +L LSR++ G  +L    ++  D V   +    +  +              I + +    
Sbjct: 449 LLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQA 508

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D   M +VI N+++NA+K++  GG + V +     +   +SI D G GI   ++ 
Sbjct: 509 LWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQ-ILLSISDQGLGIPRKDLG 567

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F +   A   A+ G GLGL IA+ I+  HGG+    S+   G      LP   + 
Sbjct: 568 KIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYEPMD 627

Query: 479 NF 480
             
Sbjct: 628 EE 629


>gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 530

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/314 (32%), Positives = 157/314 (50%), Gaps = 12/314 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNVKILSCQAEKDDL---- 224
                 S+  + I L G +         +T        L +S+  +     E+       
Sbjct: 219 GATTWYSITKVPIRLGGDVVGLAGIARDVTKRKQAEDLLRRSHDDLQRAVDERTAWLRQE 278

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+    A+  +   R  AE  + AKS FLA+MSHELRTPLNAI+GF+E +    MG    
Sbjct: 279 ISRRAQAEEQARAARDVAEASSRAKSTFLANMSHELRTPLNAIIGFAE-LAESQMGEAEK 337

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +    +I DI  S  HLL +I++ILD++R+EAG+  L ES I + ++++  + +      
Sbjct: 338 QRLGSFICDIGESAHHLLRVISDILDVARVEAGKINLHESLIFIPEVIQSAVRLTAPSVT 397

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K   +       L  +  DE+ ++QV+LNL++NA KFT   G++ +           +S
Sbjct: 398 AKQQTVLTSCPDDLPRLKGDERLIKQVLLNLVANASKFTQNNGQITIRAELV-DGCVRLS 456

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I DNG GIA  +I  VL  FGQ    +   ++G GLGLP+A+  M  HGG   ++S+L +
Sbjct: 457 IADNGCGIAPDDIAKVLQPFGQVENLLAPKQEGTGLGLPLAREFMELHGGSLDVQSQLNQ 516

Query: 465 GVEVIAILPNTRVL 478
           G  VI   P  R+ 
Sbjct: 517 GTTVILTFPPDRLA 530


>gi|328951187|ref|YP_004368522.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451511|gb|AEB12412.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 129/322 (40%), Gaps = 16/322 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A            +   ++   +L   L       L         +    +  L     K
Sbjct: 171 ATLRELARSYAFTAVTVLLFGSLLAYLLVTRTLQPLETVARKAEEVSLQGMTSLPEPRGK 230

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D++ A +     +      R E    +++RFLA  SHELRTP+ AILG    +       
Sbjct: 231 DEVAALVRALNRMLS----RLEAAFRSQTRFLADASHELRTPITAILGHVGYLLRR---T 283

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  +E +  I R  + +  L+ ++LDL+  E G + L    ++L  ++ E     + 
Sbjct: 284 SLTEAQRESLEIIRREAERMTKLVTDLLDLAGSE-GGWRLEIRPVNLASLLNELAEEYRP 342

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
               +         PS   V  D+  + QV  NL++NA+K  A    + +    + G   
Sbjct: 343 AFNGR----LVVEAPSTVWVAGDDSRLHQVFANLVNNAIKAGAR--TITLRA-RSLGEKV 395

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D+GPGI    +P +   F +   A   A  G GLGL I ++I+  HGG+  + S+
Sbjct: 396 VVQVVDDGPGIPPEHLPYLFERFYRVDKARDRAAGGSGLGLAIVKAIVEAHGGEVWVESE 455

Query: 462 LREGVEVIAILPNTRVLNFIPE 483
           L +G      L    V   +P+
Sbjct: 456 LGKGAVFSVSL-RRAVAQPLPQ 476


>gi|312792509|ref|YP_004025432.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179649|gb|ADQ39819.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 15/318 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-L 215
           +     +F+            ++++      S++  +   +   T     +  +++ + +
Sbjct: 154 YSFLKLLFIVLLVADAIGMITSVITG----FSISQKILKPIKEITNTAKRITATDLNVKI 209

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           +     D+L    +    + +  +   E++N    +F++  SHELRTPL+ I G+  +I 
Sbjct: 210 NVGEVDDELSNLAKTFNEMIERLKISFEKQN----QFVSDASHELRTPLSVINGYINLI- 264

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +  G  + E  +E I  I    +++  L+  +L L+R ++G  +L +  ++L  +V E 
Sbjct: 265 -DRWGKNDKEVLQESIVAIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEI 323

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +   +L A  +N     K       ++AD + M+Q++  ++ N++KFT  GG ++++V  
Sbjct: 324 VKEGKLVAPNRNWSYNLKGRID---IFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEK 380

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +   I +KDNG GI   EI  +   F +          G GLGL I + I+  H G+
Sbjct: 381 HLDK-VKIVVKDNGIGIPREEIGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGE 439

Query: 456 FLIRSKLREGVEVIAILP 473
            L+ S+L +G EV  +LP
Sbjct: 440 ILVESELGKGTEVSVLLP 457


>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
 gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 431 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPNGVD----R 486

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 487 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLG 546

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP +   +  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 547 LYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQC-DGDYLSIRVRDT 604

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 605 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 664

Query: 469 IAILPN 474
              +P 
Sbjct: 665 TLRIPL 670


>gi|301052302|ref|YP_003790513.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374471|gb|ADK03375.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 462

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKENTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKHISITIEDEGEGIPSEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 757

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 14/252 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++  +      RK AE+  L K  FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 515 IQEIKDKEEELIRARKLAEQAEL-KQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISE 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  + + LL L+N++L+LSRIE+G         S            Q+   
Sbjct: 572 EEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIIL 631

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
              +E  ++      ++  D   + QVI N L NA KFT+ G   H+ +G+      +  
Sbjct: 632 PP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEI 687

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI + E+  +   F +         QGVGLGL I++ I+    G   ++S+
Sbjct: 688 HIFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSE 743

Query: 462 LREGVEVIAILP 473
           + +G    A+LP
Sbjct: 744 VNKGSRFTAVLP 755


>gi|229175384|ref|ZP_04302899.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
 gi|228608216|gb|EEK65523.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
          Length = 484

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++ PS   V AD + + +VI NL+ N+VK+      +++VTV        
Sbjct: 347 LSKEGIEVNLQLHPSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKINVTVSI-DDNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+  + S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWVESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|194015646|ref|ZP_03054262.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
 gi|194013050|gb|EDW22616.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
          Length = 471

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  FLA++SHELRTPL+ + G++E IE   +        K+ +  I      L
Sbjct: 237 LEKVEQHRREFLANVSHELRTPLSYMKGYAEGIEEGIID------QKKGMHIIQDEAARL 290

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+N++LDL+++E   Y L+   I    ++ + +  +   A +K+I + + +D     V
Sbjct: 291 SRLVNDLLDLAQLEGDSYPLTMEPIVFAQLIHDVLDQMAFIANQKSIYLKRTLDED-CIV 349

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + D   ++QV+ NLL NA+ +T  G  V + +         + + D G GI + ++P V 
Sbjct: 350 YGDSDRLQQVVRNLLDNAIHYTPSGKSVSIEL-LVHQHKAELRVTDEGNGIPKEDLPHVS 408

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F + + A    + G GLGL I   IM  H G F I+S+   G   I  LPNT +   +
Sbjct: 409 ERFYRVNKARTRKDGGSGLGLAIVYQIMKKHHGTFDIQSEPGYGTTAIIQLPNTPIDEDL 468


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            +    K  F++ +SHELRTPL +I G   ++    +   ++E  K  +     S   L+ 
Sbjct: 940  QIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLLKA-DSEEGKRMLYIAVDSTDRLVR 998

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN+ILD+ RIE+GR ++ +   ++ D++ E + ++Q  A +  +E+   +     S+WA
Sbjct: 999  LINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQALANK--VEVTLSVSSLSISLWA 1056

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   + Q ++NLLSNA+KF+  G  V +TV        +I +KD G GI   ++ ++   
Sbjct: 1057 DPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHLLFI-VKDEGRGIPTEKLESIFER 1115

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F Q   +     +G GLGL I +SI+  H G   + S L EG     ++P  
Sbjct: 1116 FQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVESVLGEGSIFYFMIPIR 1167


>gi|297564622|ref|YP_003683594.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849071|gb|ADH62086.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 365

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 138/319 (43%), Gaps = 11/319 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +  L   +  +     +A    A +        ++  ++ ++      +  + + + + 
Sbjct: 50  LHADLERGLRSTLTAAWLASLPLAGLLAAGTAWVVSRRVSRSVRLLACGSREIAQGHYRN 109

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                 +D+L +  +    +++      E+   ++   + S++HELRTPL  + G++E +
Sbjct: 110 RLKVQGRDELASLAQDFNRMAE----ALEKVEQSRVELIGSVAHELRTPLAGLQGYAEAL 165

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P       +    I    + +  L+ ++  +SR+EAG  E+    +   + +R+
Sbjct: 166 ADGVLPPE------QAAHRIAHEVRAMRRLVEDLSLVSRVEAGAVEIRPQPLDPAEALRQ 219

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                +L   E+ + +   + P L  VWAD + ++QV+ NLL+NA++ T  GG V +  G
Sbjct: 220 AAERFELVFAEQGVALRLDVPPRLPPVWADLERLQQVLSNLLANALRHTPSGGEVVLQAG 279

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    S++D GPGI       V   F +   A    + G G+GL IA+ ++   GG
Sbjct: 280 LVPSG-VCFSVRDTGPGIPPEHQARVFERFYRVDSARSRQDGGSGVGLTIAKGLVEAMGG 338

Query: 455 QFLIRSKLREGVEVIAILP 473
              +RS+   G      LP
Sbjct: 339 TMGLRSEAGRGSTFWFTLP 357


>gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
 gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
          Length = 1448

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 145/324 (44%), Gaps = 18/324 (5%)

Query: 171  VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + A       +   L + +    A   + +  I + L    + +   Q+ K  L    E 
Sbjct: 754  IAAKGVLGDWNYDALKMPIIVRPAWWQTTYAAIAFFLILLIIVLTIIQSMKKSLNRVRER 813

Query: 231  AKSLSDETRKRAEEE----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             K L+ + R+R  +           N+AKS FLA MSHE+RTPL+ I+G +E++      
Sbjct: 814  EKELAFQVRERTVDLEEAKQAAEAANVAKSEFLAVMSHEIRTPLHGIIGMNELLLKT--- 870

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                     +      SG+ LL+LI+EILDL++IEA R ++      L+ ++ E   +  
Sbjct: 871  -DTTPQQSRFARAALNSGKTLLHLISEILDLAKIEADRMDIESVEFDLVSVIDEVCYLQG 929

Query: 341  LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              AQ K +++    D +L+ S   D + +RQ+I NL+ NA+KFT   GR+ V +G  +  
Sbjct: 930  EPAQRKGLKLDFIPDAALAGSYRGDPQKIRQIITNLVGNAIKFT-ESGRITVALGVDASG 988

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               + + D G GI +     V   F Q   +      G GLGL I ++     GG   I 
Sbjct: 989  DVRMVVDDTGDGIPDDARTRVFEKFTQADTSTTRQYGGTGLGLTICRNFAEVMGGSLSIE 1048

Query: 460  S-KLREGVEVIAILPNTRVLNFIP 482
            +     G  VI  +P   V    P
Sbjct: 1049 TPTPGTGTRVIVAIPLE-VAEIRP 1071


>gi|39934628|ref|NP_946904.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648477|emb|CAE26999.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Rhodopseudomonas palustris
           CGA009]
          Length = 903

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLNNETYKEY 290
           +      R  AE+ + AK+ FLA+MSHE+RTPLN I+G++++ +E ET+ P      +  
Sbjct: 383 EDELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDT----RRQ 438

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  +   L  +I++ILD S+IEA    L    + + +++  C  +++ +A EK +++
Sbjct: 439 VMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKL 498

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKD 407
                 +   +  D   +RQV+LNL++NAVKFT  G   + V+            IS+ D
Sbjct: 499 IATAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVAD 558

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+      +   F Q    I     G GLGL I+Q I+    G+  I S+   G  
Sbjct: 559 TGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGST 618

Query: 468 VI--AILPNTRVLN 479
                 LP    L+
Sbjct: 619 FYFEVELPVAERLD 632


>gi|163744439|ref|ZP_02151799.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
 gi|161381257|gb|EDQ05666.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
          Length = 506

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 167/439 (38%), Gaps = 47/439 (10%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
            +  +L   IG          + +++   +   ++S          ++  +  W    L+
Sbjct: 82  LVIAILGCTIGILIAGMFRLWVTTVLGGVILGLSISAMHYTGMVAYRVEGIIHWDKNYLI 141

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLT--IYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
             + + + ++ + L                  A  ++ L  + +  F +     +     
Sbjct: 142 ASVLLAMVFSTVALFFGAQNHRYSTLKMTLAFALAIVGLHFTGMVAFQVTPTTLMG---- 197

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
                       +  +  L  ++    +    +              +            
Sbjct: 198 ---------GYSNPDEFKLLALVIAGTAAMIVLGGLFTYFIENRTRMENI---------- 238

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN------ 284
                 E R  A   + AKS F++ +SHELRTPL  I G++  +       +        
Sbjct: 239 --VELREARDEARNASRAKSEFMSVLSHELRTPLTIINGYASFLTNLKGHTIAKLKPNEP 296

Query: 285 ----------ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                     +  + Y G I  +G HLL +INEILD + IE    +L++++    D++ E
Sbjct: 297 ISKVHFDDLGDQTERYGGRIKSAGDHLLTIINEILDYTSIELNSIKLNKTSFQAGDLLAE 356

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                Q  A+EK   I  + D    +V AD    +Q+++NLL NA+KF++    + +   
Sbjct: 357 LEEQFQGLAKEKQSLIEIEFDA--FNVLADRGRCKQILINLLGNALKFSSA-SNIRMRAK 413

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G    + I+DNG G+ + ++  +  +F Q   A KSA+ G GLGL I++ + A H G
Sbjct: 414 MI-GETCRLEIEDNGCGMPKEDLERIFQAFIQAESATKSADGGTGLGLAISKKLAAAHDG 472

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S +  G +    LP
Sbjct: 473 DIHVESTIGSGTKFTVDLP 491


>gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
           burnetii RSA 331]
 gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 331]
          Length = 669

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 274 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 329

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++
Sbjct: 330 IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQL 389

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 390 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 448

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G
Sbjct: 449 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVG 508

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 509 SEFTCIIPFRLQADSNP 525


>gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
 gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 669

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 274 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 329

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++
Sbjct: 330 IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQL 389

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 390 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 448

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G
Sbjct: 449 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVG 508

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 509 SEFTCIIPFRLQADSNP 525


>gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
 gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
          Length = 1010

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 7/243 (2%)

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            A++ +   R+  E     K+ F++ +SHELRTPL AI G   ++          + + ++
Sbjct: 765  AQAQNISERRAVE---QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYD-HKPQEFHKF 820

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            I       + L+ L+N+ILD+ R+ +G+ E    A S  D++ + +  LQ  A + +I +
Sbjct: 821  IQIALLETERLVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITL 880

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                 P+   +WA+   M Q + NL+ NA+KF+     V ++  +         ++D G 
Sbjct: 881  EIL--PTSLQLWAERDAMLQTLTNLVGNAIKFSPPHTTVTLSA-YPQDDMVLFQVRDQGR 937

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            GI   ++ T+ + F Q   +    + G GLGL I QSI+  HGG+  + S+L +G     
Sbjct: 938  GIPPEQLETIFSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYF 997

Query: 471  ILP 473
             +P
Sbjct: 998  TIP 1000


>gi|170726313|ref|YP_001760339.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811660|gb|ACA86244.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1680

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 15/285 (5%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +  L  SN ++   Q        E+E A++            +  KS FLA+MSHELRTP
Sbjct: 945  SEALKVSNKELEEKQTFLKRQRDEIESARADLTVKADELALASKYKSEFLANMSHELRTP 1004

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            LN++L  ++ +         NET  E    I   G +LL LIN+I+DLS++EAG+  +  
Sbjct: 1005 LNSLLLLAKGLADNK-SKNLNETEVEDAQVIFDGGNNLLCLINDIMDLSKVEAGKLSIHI 1063

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
              +++  + R    +    A+ + +E   K+D  L  +V +D   + Q++ NLLSNA+KF
Sbjct: 1064 EEVNISTLCRNLRQVFNPIAKNRELEFDIKVDEKLPATVSSDGHRIEQILRNLLSNALKF 1123

Query: 383  TAIGGRVHVTVGWTSGRGQY------------ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            T   G V + +G+++    +             ++ D G GI + +I  +  +F Q   +
Sbjct: 1124 TEA-GSVTLFIGYSAADTVFSHSCLDPNTALSFAVVDTGIGIPQNKIQAIFEAFQQQDGS 1182

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                  G GLGL IA+ +    GG+  + S+  +G      LPN 
Sbjct: 1183 TSRKYGGTGLGLTIARELTRLLGGEIQLESEPNQGSTFTLFLPNA 1227


>gi|332968993|gb|EGK08035.1| phosphate regulon sensor histidine kinase protein PhoR
           [Psychrobacter sp. 1501(2011)]
          Length = 508

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +     +  F+ ++SHELRTPL  I+G+ E    +   P  +  ++     + +  + 
Sbjct: 262 RLQHLEQMRKDFVGNVSHELRTPLTVIMGYIETFSDQ---PDLDPKWRRGFNLMTQQTER 318

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  +IN++L LSR+E     +    + +  ++       Q   ++    I   ID  L  
Sbjct: 319 MNRIINDLLLLSRLENEE-SIRTERVDMPKLMTSIFDDAQAYNKDFGHLIDLHIDSQL-D 376

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+  E  +   +LNL++NA+K+T  GG + +      G     S++DNG GIA   I  +
Sbjct: 377 VYGSEVYLNSALLNLVTNAIKYTPKGGEIRINWQEVKGGCS-FSVQDNGIGIASEHIDRL 435

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +       +  G GLGL I + ++  HG +  I+S+  +G       P
Sbjct: 436 TERFYRVDSGRSRSTGGTGLGLAIVKHVLYQHGAKLTIQSEENKGSTFTVFFP 488


>gi|313498316|gb|ADR59682.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 750

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/409 (22%), Positives = 162/409 (39%), Gaps = 24/409 (5%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIG---------LCWTLLTLVEPGTWTPEYLTIYKSA 143
           ++  + +         + L  Q   G         +   L  +      T     ++   
Sbjct: 96  LLRGEPEPQGPLRIERFPLDYQPPSGPVRHLGELEVSIDLGAVHRRLYATGLASLLWMGV 155

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG-------MLATA 196
            L       +   + L              +          L    +        +    
Sbjct: 156 FLCGLAVALSGLFYRLVTRHLQVMAEFARRIGAGQWQEPLRLGRRRSSRPDEIDTVANAL 215

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                 I   + +     L  Q ++D+L A +E   +     +  AE  NLAKSRFLA+M
Sbjct: 216 DDMRRAILSDIERRERDRLELQGKRDELQAIVERRTASLARAKDEAEAANLAKSRFLATM 275

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLN ILG +E++    +   +    ++ +  ++++G+ LL +++E+L  +R+E 
Sbjct: 276 SHELRTPLNGILGMAELLRGGRLEVAD----RQRVEALYKAGEGLLAILSEVLYFARLEE 331

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNL 375
           G         SL  + +E + +L+  A E    +  ++D  L++  +  E+ +RQV+ NL
Sbjct: 332 GESRAERVVFSLRQLCQEVLALLEPMAMENADTLQLQVDEQLAAYQYGAEQYLRQVLSNL 391

Query: 376 LSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L+NA+KFT  G     V V       +   +S++DNG GI       +   F Q S A+ 
Sbjct: 392 LANAIKFTEHGQVQLTVQVLANNECSQRLRLSVRDNGIGIEPAVQAKIFDRFVQASEAVT 451

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
               G GLGL I + ++   GG   + S   +G      L   R     
Sbjct: 452 QRYGGTGLGLAICKHLVEKLGGSIGLESVQGQGSCFWFELDMARGQPVS 500


>gi|16125186|ref|NP_419750.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233920|ref|YP_002516356.1| hybrid sensor histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13422206|gb|AAK22918.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220963092|gb|ACL94448.1| hybrid sensor histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 605

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 176/454 (38%), Gaps = 13/454 (2%)

Query: 28  PSKMDFDREIITLHVESLFRVSPILPLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAA 85
                 D  ++ +   +L      +    LL A I        +P +       +     
Sbjct: 2   APSKGEDSRLVRI---ALTEAYVPIARGYLLAAAIYNSLIAIAHPFYEKGLAFVMLTSLT 58

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
             +         +      V      +      L    +T        P+ L  +    L
Sbjct: 59  GATAIYAFSAWFLLRRRRIVGGHLEWLVLGMNALFLGHVTAFHLFHLEPQKLIYFVLLAL 118

Query: 146 LIALSI-SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           + A S  S     +   A  +S   +        +     + ++ A       +    + 
Sbjct: 119 VFATSAPSRRVANVSVGAALVSLVFIARGAPGDMVNQYLFVGLAGAFAAVGMSTLMRGVV 178

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               ++ +   +   E +  + E    ++ +      AE+ N AKS FLA+MSHE+RTPL
Sbjct: 179 GREVRARLASQALNDELERELTENRRLRTEAQALALAAEKANRAKSEFLATMSHEIRTPL 238

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LG ++++    +        +  +  I  SGQ LL LIN ILD+SRIE G+ E+ E 
Sbjct: 239 NGVLGMAQIMASGKLQV----DQRRRLETITASGQSLLGLINTILDVSRIEDGKMEIVEG 294

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
              L   +    ++    A++K+++   ++ P+++     D + +RQV+ NL+SNA+KFT
Sbjct: 295 PFDLTAQMHTLSLLYGGLARDKHLDFSLEVSPTVAGCRQGDGERLRQVLSNLISNAIKFT 354

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V VT+           + D G GI E +   + T F Q   +      G GLGL 
Sbjct: 355 DS-GAVRVTLDGDDQGLVA-RVLDTGVGIPEAQRERLFTKFAQLDSSSTRRVGGSGLGLA 412

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           I +S+    GG+    +    G      LP  R+
Sbjct: 413 ICKSLAELMGGEIRFLAPAEGGACFELTLPMARI 446


>gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493]
 gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 683

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 288 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 343

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++
Sbjct: 344 IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQL 403

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 404 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 462

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G
Sbjct: 463 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVG 522

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 523 SEFTCIIPFRLQADSNP 539


>gi|319938401|ref|ZP_08012796.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
 gi|319806489|gb|EFW03153.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
          Length = 562

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY-IGDIHRSGQH 300
           A++    +S F +++SHEL+TP+ +I G+S+++     G +++ET K   +  I      
Sbjct: 329 AKKAEKMRSEFFSNVSHELKTPMTSIRGYSDLL---VQGLVHDETQKHMMLEKIQEEVNS 385

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LIN+IL LSRIE    E+    + +  +V E +   Q+   + +I +         +
Sbjct: 386 MSTLINDILMLSRIENMDIEVEMMPMKMKGLVDEVLESYQVELSKHDITMHTDFTD--LT 443

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              + + +  ++ NL+ NA+K+    G V V V    G+   +++KD G GI   +   +
Sbjct: 444 YIGNHQQIYTLLNNLIGNAIKYNIDHGHVFVNVE-DQGQAMKVTVKDTGIGIPLADQSRI 502

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +          G GLGL I + I++++ G   + S+L +G  +  ILP   +  
Sbjct: 503 FERFYRVDKGRSKQRGGTGLGLAIVKHIVSHYKGVIHLTSELGQGTTIEIILPQQSIKE 561


>gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 460

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
             +    +  F+A++SHELRTP+  I G++E +    +      T  +++  +H     L
Sbjct: 216 LRQMEKMRRDFVANVSHELRTPITIIKGYAETLLAGALEHPTQAT--KFVSIVHSHADRL 273

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L++++L LS++E+G   L   ++ + +I    +++L+ + +E+ I +         SV
Sbjct: 274 ASLVSDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSV 333

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            AD   + QVI+NLL NAVK+T  GG V ++          I+++D G GI   ++  + 
Sbjct: 334 MADPGRLEQVIVNLLDNAVKYTPAGGSVTLSAA-DREESVTIAVQDTGIGIPSKDLSRIF 392

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A    E G GLGL I + I+   GG    +S   +G      L
Sbjct: 393 ERFYRVDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGSTFFVTL 442


>gi|255526818|ref|ZP_05393717.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296186417|ref|ZP_06854820.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509497|gb|EET85838.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296048864|gb|EFG88295.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 775

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 10/256 (3%)

Query: 246 NLAK------SRFLASMSHELRTPLNAILGFSEVI---ELETMGPLNNETYKEYIGDIHR 296
           N  K          A++SHEL+TPLN I   ++++     + +  +N E     +  I +
Sbjct: 507 NEMKKIFQIHEELFANVSHELKTPLNVIFSTNQLMELYLKKGLVEVNKEKVFRDVDIIKQ 566

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +   L  LIN I+DLS+IE+G ++L+ S  +++++    +  +    + K I I    + 
Sbjct: 567 NCYRLTKLINNIVDLSKIESGFFKLNLSNENIVEVTENIVQSVSEYIKRKEINIIFDTNT 626

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               +  D + + ++ILNL+SNA+KF+  GG + V V    G    IS++D G GI +  
Sbjct: 627 EEKIIACDPEKIERIILNLISNAIKFSNSGGSIFVNV-LDKGGIVEISVEDTGIGIEKKY 685

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F Q   ++    +G G+GL + +SI+  HGG+  + S++ +G      LP   
Sbjct: 686 LDNIFGRFQQVDKSLSRNVEGSGIGLSLVKSIVEMHGGKISVASEVGKGSIFKVELPARI 745

Query: 477 VLNFIPEDNHESTQYK 492
           + +    + ++    K
Sbjct: 746 IKSSKAIEKNKQINNK 761


>gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 484

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 161/296 (54%), Gaps = 5/296 (1%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             +    + + L G+    + F   I+    ++   IL   A +D  I E +  +    +
Sbjct: 192 PRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIRD--ITERKRFERALQD 249

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +     N AK +FLASMSHELRTPLNAI+GF+  + +   GPLN++  K+ +G +  S
Sbjct: 250 KNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLNDD-QKKQLGTVRSS 308

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            QHLL+LIN++LD+++I+AG+ EL    I+L  ++ E      L+A+EK +E+  ++   
Sbjct: 309 AQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQAREKALELGLQLPDQ 368

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             ++  D + + Q+++NL+SN +KFT  GG V+VT+   + +  ++ ++D GPGI     
Sbjct: 369 PVNLETDRRALSQIVMNLISNGLKFTHEGG-VYVTLVRPNPQSVHVCVRDTGPGIDTSAQ 427

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F +G ++     +G GLGL ++Q +    GG   ++     G E +  LP
Sbjct: 428 ENLFQPFSRGVLS-SRRTEGTGLGLYLSQKLANQLGGNIQLQRSDASGSEFLLSLP 482


>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1224

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 14/300 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   L   NV +   + E       LE ++    +     E  N  KS FL++MSHE
Sbjct: 475 LRAVNEELENRNVVLDRQKDEIIQNNEALERSRKELQDKAYELEMSNRYKSEFLSTMSHE 534

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+IL  S+ +       L ++   E+   IH SG+ LL LIN+ILDLS++E G++
Sbjct: 535 LRTPLNSILILSQGLMENRQQNLLDKQV-EHARVIHSSGRDLLMLINDILDLSKVEEGKF 593

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           EL    ++L D+ +E   M   +A+ K +E    +D  L   V  DE  + Q++ N +SN
Sbjct: 594 ELLVDQVNLADLSKELHAMFDSQAEHKKLEFIVNLDERLPETVVMDEHRLNQILRNFISN 653

Query: 379 AVKFTAIGG-RVHVTV----------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           A+KFT  G   V++ V                    S++D G GI++ +   V  +F Q 
Sbjct: 654 ALKFTHTGRVEVNIRVPEALVKFGEQWLAPPEAISFSVRDTGIGISKDKQALVFEAFQQV 713

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNH 486
              I     G GLGL I++ +    GG   + S+   +G E   +LP       + E   
Sbjct: 714 DGTISRKYGGTGLGLTISRKLAKLMGGGISVASEGENKGSEFTLVLPRRSANAVLAEQEP 773


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 236 DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +E RKRAE   E + AK+ F +++SHELRTPL  ILG  E +       L+       I 
Sbjct: 336 EEERKRAEALTELDRAKTVFFSNISHELRTPLTLILGPIEALLHSDESSLSKGDRISLI- 394

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
              R+   L  L+N +L+ SR+EAGR +       L     +   + +   ++  IE   
Sbjct: 395 MAQRNVLRLQKLVNTLLEFSRLEAGRIQAFYQPTDLATFTHDLASVFRSAMEQAGIEFSV 454

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
              P    ++ D +   +++LNLLSNA KFT   G + +++ WT G    + I+D G GI
Sbjct: 455 NCPPLPELIYVDRQMWEKIVLNLLSNAFKFTFE-GEIRLSLAWT-GERVKLDIQDTGVGI 512

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A  EIP +   F +         +G G+GL + + ++  HGG   + S L  G      +
Sbjct: 513 APEEIPHLFQRFHRVLGVRSRTHEGSGIGLSLVRELVNLHGGTIEVNSTLEAGTCFTIYI 572

Query: 473 P 473
           P
Sbjct: 573 P 573



 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            ++   EL    +   ET +  +++N    +F   +SH+L+ PL AI   S+ IE +    
Sbjct: 1139 EEKAQELAQLNTTLTETAELLQKKNEELDQFTYIVSHDLKAPLRAIANLSQWIEEDLSDI 1198

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            +  E+ ++ I  + +    +  LIN +LD +RI  GR E ++  + +  ++ E I  L  
Sbjct: 1199 IPPESQQQ-IELLRQRVYRMDQLINNLLDYARI--GRSEATKERVEVAQLLEEIIDSLAP 1255

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG 400
                       +ID  + ++  ++  + QV  NL+SN +K      G++ ++V   +   
Sbjct: 1256 -----PPTFTLEIDLPMPTLMTEKLLLSQVFSNLISNGIKHHGKDQGKLKISVQEQNNFY 1310

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Q++ I D+G GI       +   F              G+GL I + I+   GG+ ++ S
Sbjct: 1311 QFL-IADDGQGIPVDYQEKIFAIFQTVKSKDNKDS--TGIGLSIVKKIVEIQGGKIMVSS 1367

Query: 461  KLREGVEVIAILPN 474
            ++ EG       P 
Sbjct: 1368 QVGEGTTFSFTWPK 1381


>gi|118480493|ref|YP_897644.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196041968|ref|ZP_03109255.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|196045450|ref|ZP_03112681.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|225867446|ref|YP_002752824.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|300118834|ref|ZP_07056554.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|301056939|ref|YP_003795150.1| sensory box histidine kinase YycG [Bacillus anthracis CI]
 gi|118419718|gb|ABK88137.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196023657|gb|EDX62333.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|196027223|gb|EDX65843.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|225789643|gb|ACO29860.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|298723802|gb|EFI64524.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|300379108|gb|ADK08012.1| sensory box histidine kinase YycG [Bacillus cereus biovar anthracis
           str. CI]
          Length = 613

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  +   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|199597664|ref|ZP_03211092.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591471|gb|EDY99549.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 636

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +   +++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +         +S
Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQMHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|192290144|ref|YP_001990749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192283893|gb|ACF00274.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 903

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLNNETYKEY 290
           +      R  AE+ + AK+ FLA+MSHE+RTPLN I+G++++ +E ET+ P      +  
Sbjct: 383 EDELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDT----RRQ 438

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  +   L  +I++ILD S+IEA    L    + + +++  C  +++ +A EK +++
Sbjct: 439 VMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKL 498

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKD 407
                 +   +  D   +RQV+LNL++NAVKFT  G   + V+            IS+ D
Sbjct: 499 IATAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVAD 558

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+      +   F Q    I     G GLGL I+Q I+    G+  I S+   G  
Sbjct: 559 TGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGST 618

Query: 468 VI--AILPNTRVLN 479
                 LP    L+
Sbjct: 619 FYFEVELPVAERLD 632


>gi|260684073|ref|YP_003215358.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260687732|ref|YP_003218866.1| putative sensor histidine kinase [Clostridium difficile R20291]
 gi|260210236|emb|CBA64481.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260213749|emb|CBE05667.1| putative sensor histidine kinase [Clostridium difficile R20291]
          Length = 895

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNE 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++           N 
Sbjct: 618 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRNEKIKDYNN 677

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 678 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 737

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    D    +V+ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 738 KDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 796

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 797 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKG 856

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 857 TEFLISLPMK 866


>gi|255307522|ref|ZP_05351693.1| putative sensor histidine kinase [Clostridium difficile ATCC 43255]
          Length = 912

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNE 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++           N 
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRNEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    D    +V+ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|255093477|ref|ZP_05322955.1| putative sensor histidine kinase [Clostridium difficile CIP 107932]
          Length = 908

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNE 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++           N 
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRNEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    D    +V+ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|254976087|ref|ZP_05272559.1| putative sensor histidine kinase [Clostridium difficile QCD-66c26]
 gi|255315220|ref|ZP_05356803.1| putative sensor histidine kinase [Clostridium difficile QCD-76w55]
 gi|255517889|ref|ZP_05385565.1| putative sensor histidine kinase [Clostridium difficile QCD-97b34]
 gi|255651005|ref|ZP_05397907.1| putative sensor histidine kinase [Clostridium difficile QCD-37x79]
          Length = 912

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNE 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++           N 
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRNEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    D    +V+ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
 gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
          Length = 946

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 449 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 505 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 564

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V   +G    IS++D 
Sbjct: 565 LYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQC-AGDYLQISVRDT 622

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G   
Sbjct: 623 GEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRF 682

Query: 469 IAILPNTRVLNFIP 482
              +P   V N  P
Sbjct: 683 TIRIPLYGVQNTSP 696


>gi|126700109|ref|YP_001089006.1| putative sensor histidine kinase [Clostridium difficile 630]
 gi|255101653|ref|ZP_05330630.1| putative sensor histidine kinase [Clostridium difficile QCD-63q42]
 gi|115251546|emb|CAJ69379.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 912

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNE 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++           N 
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRNEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    D    +V+ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|309789938|ref|ZP_07684514.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227958|gb|EFO81610.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 448

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 7/280 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
             A  F     +    +       +     L +ELE   S         E  N AK  FL
Sbjct: 175 VIASLFLLRFGHIQAVAEQARRRAEQHLALLNSELEQRVSERT---TELERANQAKDMFL 231

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHELRTPLNAILGF+  + ++  GPL  +  ++ +  I RS +HLL++IN+ILD+++
Sbjct: 232 ANMSHELRTPLNAILGFTGTLLMKLPGPLTADQERQ-LNTIQRSARHLLSMINDILDMAK 290

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           I+AG  E+    ++  +++ E    L+  A++K +E+     P+L  +  D + + Q++L
Sbjct: 291 IQAGHLEIQPEPVNCAEVLNEVFDHLRPIAEQKRLELALIAPPTL-QIQTDRRALNQIML 349

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL++NA+KFT  GG V + V     +   I + D G GI E ++  +   FG+ + A   
Sbjct: 350 NLVNNAIKFTDRGG-VRIEVEPRDTQ-VAIRVVDTGIGIREADLGLLFVEFGRVNSAEVR 407

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +G GLGL I+Q +    GG+  ++S   EG      LP
Sbjct: 408 QREGTGLGLRISQRLAELLGGRIEVQSCYGEGSTFTLYLP 447


>gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 906

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 4/263 (1%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           ++IL   ++       LE A +      +R  E +  K  F+++++HELRTPL +I  FS
Sbjct: 638 MEILDEASQVIAYSQRLEAATAELKAANERLTELDRMKDDFISTVTHELRTPLTSIRSFS 697

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++       ++     E++  I +  + L  LIN++LD++++E+GR       +    +
Sbjct: 698 EILFDNPG--IDEAQRLEFLAIIIKESERLTRLINQVLDMAKMESGRMTWHFVMVEPRQL 755

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVH 390
           +++ I       +++ + +  ++   L  +  D     QV++NLLSNAVKF   G GRV 
Sbjct: 756 IQDSIAATGALFEDRRVTLETRLADDLPPLRTDADKFMQVVINLLSNAVKFVEAGQGRVR 815

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +T+  T+     + + DNGPG+    +  V   F Q    + +  +G GLGL I+++I+ 
Sbjct: 816 LTLAATANG-IRVEVADNGPGLPANALEAVFDKFHQVGDTLTNKPKGTGLGLAISRTIVE 874

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
           + GG+  + S   +G      LP
Sbjct: 875 HLGGRIWVDSIEGQGATFTFDLP 897


>gi|229085933|ref|ZP_04218157.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
 gi|228697369|gb|EEL50130.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
          Length = 458

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +      I   +  KD++    
Sbjct: 163 IFLAVLLGFIVVLSIVFIAIAARYIIRPIQTFTKATQKIASGEYDIELEEGRKDEIGTLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              K ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    +  E  K
Sbjct: 223 MSFKKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NVTEEEQK 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ + ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEETVLQVKEFNLQKQIKDVVFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  NL +N++KFT  GG +             IS+ D+
Sbjct: 336 AVEFDVPN--MNITGDENLLHQVWANLFTNSIKFTDQGGTIEFAAKELE-NSVEISVSDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I   I+  H G   + SK  EG   
Sbjct: 393 GIGMEQEEVNRIFDRFYKVDTARARNVEGSGLGLSIVHKIVELHHGIISVESKKGEGTTF 452

Query: 469 IAILPN 474
              +P 
Sbjct: 453 RIEIPK 458


>gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
          Length = 603

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +      RKRAEE   AK+ FL+ MSHE+RTP+NAI+G S ++   T+ PL  
Sbjct: 51  ITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLPPL-- 108

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             Y+EY   +  S ++LL L+N ILD +++EAG+  L E    L  ++      L ++A+
Sbjct: 109 --YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSVKAE 166

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK + I  + DP +  ++  D   + QV+ NLL NA+KFT   G V + V    G     
Sbjct: 167 EKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQ-GAVTLAVRRLHGDAEGV 225

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI + ++  +  +F Q S  I     G GLGL I Q ++A HG +  + 
Sbjct: 226 FLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKMRVE 285

Query: 460 SKLREGVEV----IAILPNTRVLNFIPEDNHESTQ 490
           S   EG          + +  V    P ++ + TQ
Sbjct: 286 SVPGEGSSFAFDVRLKIASGAVALDAPAEDLQDTQ 320


>gi|116695030|ref|YP_840606.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529529|emb|CAJ95876.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a NtrB-like sensor domain [Ralstonia
           eutropha H16]
          Length = 608

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +   + +  AE  N AKS FLAS+SHE+RTP+NAI G  E+           E  +  + 
Sbjct: 164 AELAQAKTEAEAANRAKSTFLASVSHEIRTPMNAITGMLELTLARC---QLAEQERLQLV 220

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             H+S   LL LI++ILDLS++EAG++ +  +  SL  +V++ +++    A +K + +  
Sbjct: 221 TAHKSAVGLLALIDDILDLSKMEAGKFSIHPAPASLPGLVKDTLLIFGPVAAQKGLPLTS 280

Query: 353 KIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKD 407
            I  +++ +   D    RQ++ NL+SNAV+FT   G +HV +         +   +++ D
Sbjct: 281 GIGVAVAPLHQVDALRFRQILANLVSNAVRFTDS-GTIHVRLDALAPRDGVQQVMLTVSD 339

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI  GE   +   F Q     +    G GLGL I Q + +  GGQ  + S+  +G  
Sbjct: 340 TGIGIPAGEQARMFEPFEQVHDRTRPHAGGTGLGLAICQRLASAMGGQISLSSQPGQGTR 399

Query: 468 VIAILPNT-RVLNFIPED 484
           V+  LP    V   +PE 
Sbjct: 400 VMVTLPLALAVATELPEP 417


>gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 587

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 3/229 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGVVTE--PDEIRDSLAVVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    + D++ +     +++A++ ++ +             D
Sbjct: 413 VNELLNVARMDAEGLSVEKEVQPIDDLLNKMKAKYRMQAEDLDLTMEFNSGNDNQLWDYD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + VT      R   + I D G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTQPGDTIAVTTA-KDNRYNILYISDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   + K  +QG GLGL I + I+  HGG+  + S+L +G   I  LP
Sbjct: 532 YKVDASRKRGKQGTGLGLFICKMIIEEHGGKIEVESELGKGTTFIIKLP 580


>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|148975720|ref|ZP_01812551.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964793|gb|EDK30045.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 856

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ------AEKDDLIAEL 228
                    + +I +    A        I   +F+ N+  +  +        +   I +L
Sbjct: 399 VAHEFEHRMLPNIQMVVQGAKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDITKL 458

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+  +D  R+ AE     ++ FLA MSHE+RTPLN ILG S++++        +E  +
Sbjct: 459 VEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKRSVH----SEDNR 514

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  +  S +HLL ++N+ILD S+IE G++ + +    L +++     + +   ++K++
Sbjct: 515 EQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELINTLDSIYRPLCEDKSV 574

Query: 349 EI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQY 402
                        +  D+  + Q++ NLLSNA+KFT  GG + V+        T+     
Sbjct: 575 TFSIVNHLVDDIEINTDQVRLNQIMFNLLSNALKFTHQGG-ISVSFELESIFNTNKASLI 633

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + +KD G GI   +I  V   F Q          G GLGL I ++++    G   +RS  
Sbjct: 634 VRVKDTGIGIDGSKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVRSAK 693

Query: 463 REGVEVIAILPNT 475
            +G E I  +P  
Sbjct: 694 AQGSEFIIEIPVE 706


>gi|325916716|ref|ZP_08178973.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537065|gb|EGD08804.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 726

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/420 (24%), Positives = 163/420 (38%), Gaps = 23/420 (5%)

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
            +        LG +          +  W   +LVG++ + L   +  L+ P       L 
Sbjct: 27  IIITTLFISYLGWRY-QHTHGDTLMATW--LILVGELLVSLGLMVAILLRPQISHTRRLI 83

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
                   + L  ++    M       S    V    T      +      A     ++ 
Sbjct: 84  -------GMLLDYTSTGAIMAIQGEPASPLYAVCMWVTIGNGLRYGSHYLRAATAMGSVC 136

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAE--LEVAKSLSDETRKRAEEENLAKSRFLASM 256
           F + I    +      LS       +      +          + A   N AKSRFLA+M
Sbjct: 137 FLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTRAVREARHANQAKSRFLANM 196

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE RTPLN + G +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEA
Sbjct: 197 SHEFRTPLNGLSGMTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEA 252

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNL 375
           G+  +     SL +I+    ++LQ +A+ + +E   ++   +  +   D   +RQV+LNL
Sbjct: 253 GKIRIDRRDFSLREIIGSVNMILQPQAKGRRLEYGTQVADDVPDLLKGDTGHLRQVLLNL 312

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           + NAVKFT   G V + V   SG           ++D G G+     P +  +F Q  + 
Sbjct: 313 VGNAVKFT-EHGHVLLRVTRVSGSVDDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVG 371

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +    +G GLG  IA+ ++   GG+         G      LP            H ST 
Sbjct: 372 LSRRYEGTGLGTTIAKGLVEAMGGRIGFEENKPGGSVFWFELPMAIGEPLKSAPAHVSTD 431


>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
          Length = 1260

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 31/256 (12%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   E    +       A+E +  KS FLASMSHE+RTP+  ++G +E++    +     
Sbjct: 712 LEARERENQVLVANESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILLDTPL----E 767

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E+  +I RS   LL +IN+ILD+S++E+GR  L                       
Sbjct: 768 EEQREFAENIQRSANALLTVINDILDISKVESGR--LDIEEFD----------------- 808

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
                +         +V  D   +RQ++ NLL+N++KFT   G V + VG        I 
Sbjct: 809 ---HTVDFSEFGGNMTVIGDPGRVRQILTNLLTNSIKFTHE-GFVKLAVGVEKEDEDVIV 864

Query: 405 IK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +K    D+G GI E     +   F Q   +      G GLGL I+++++   GG   + S
Sbjct: 865 VKFVVKDSGIGIDEDVQQKLFQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLAS 924

Query: 461 KLREGVEVIAILPNTR 476
            L  G     I+P  R
Sbjct: 925 SLGAGTTAHFIIPFHR 940


>gi|169334063|ref|ZP_02861256.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258780|gb|EDS72746.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
          Length = 915

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 8/237 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + AE  + AKS FL+ MSHE+RTP+NAI+G + +     M     E  K+ +  I  S Q
Sbjct: 536 EEAEASSKAKSEFLSLMSHEIRTPINAIIGLTNI---NMMNEDLPEPLKKNLSKIDSSAQ 592

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL+L+N+ILD+S+I+  +  ++     L  ++ +   +   + +EK I++   ID    
Sbjct: 593 FLLSLVNDILDMSKIQNYKMVINSECFDLTKVINDIDELFISKKEEKCIKLTYDIDLQNK 652

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEG 415
               D   ++Q+I N++SNA KFT   G + +T+      ++    + SIKDNG GI E 
Sbjct: 653 YFMGDSVRIKQIISNIVSNAFKFTEEDGEIILTIREIVKDSNSSDVFFSIKDNGIGIKED 712

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           ++  +  +F Q SI   +   G GLGL I   ++   GG   ++S   EG +    L
Sbjct: 713 KLSKIFEAFEQVSINYNNET-GTGLGLFICNHLVKLMGGDLKVKSTEGEGSDFYFTL 768


>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
           RcsB, regulates colanic capsule biosynthesis [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +  + 
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVER 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
 gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
          Length = 381

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NA  G + ++    +    +   KE++  I  S Q L+ +I++ILD S++E
Sbjct: 1   MSHEIRTPMNA-YGVASLLSDTKL----DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVE 55

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ EL+        ++ + I +  ++AQ+KN+++   IDP L   V  DE  ++QV+ N
Sbjct: 56  AGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNN 115

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           LLSNAVKFT   G V + V               + D+G GIA+     V   F Q   +
Sbjct: 116 LLSNAVKFTER-GHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGS 174

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                 G GLGL I   ++   GG   + S+L  G      +P T V++ +P    
Sbjct: 175 TTRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 229


>gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
 gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
          Length = 754

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 566 VEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIA 625

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
             ++E  +++D +   +  D + + QV+ N L+NA KFT   G + +   +        I
Sbjct: 626 -PHLEFLKEVDDTPLEINVDRERLIQVLTNFLNNAGKFTET-GYIKLGYSYLPDEGKVQI 683

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 684 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGKIELKSEVG 739

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 740 KGSRFTVILPCRVV 753


>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 559

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 113/233 (48%), Gaps = 16/233 (6%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLASMSHE+RTP+N +LG  ++     +    ++  ++Y+     S + LL LIN+IL
Sbjct: 168 SEFLASMSHEIRTPMNGVLGMLDLALDTRL----DDEQRDYLEAAQNSAESLLALINDIL 223

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S+IEAG  EL   A  L   +     M   RA+EK +    +I   +   +  D   +
Sbjct: 224 DFSKIEAGMVELDSQAFRLRKRLSTLHTMFVHRAEEKGLAFGFRIGEEVPDGLVGDPMRL 283

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----------YISIKDNGPGIAEGEIP 418
           RQV++NLL NA+KFT   GRV++ V   + +G             S+ D+GPGI E    
Sbjct: 284 RQVLVNLLDNAIKFTEQ-GRVYLDVQLDAAQGALPAEGEPILLRFSVTDSGPGILESHRE 342

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   F Q   ++    +G GLGL I + +    GG   + S    G      
Sbjct: 343 HIFERFVQADGSLSRRHRGTGLGLAICKRLATLMGGDITVESAPGSGSTFTFT 395


>gi|283798490|ref|ZP_06347643.1| sensory box histidine kinase [Clostridium sp. M62/1]
 gi|291073748|gb|EFE11112.1| sensory box histidine kinase [Clostridium sp. M62/1]
          Length = 484

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 140/298 (46%), Gaps = 9/298 (3%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           ++   V+ +         L  F  +   L       L      D      E+++++S +T
Sbjct: 190 LVVFWVVAVFGLLAAGLLLKPFIRLKKVLGAVAEGDLEQDIRVDTYRETKEISEAVS-QT 248

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET--YKEYIGDIHR 296
            ++ +  + ++  F++++SHEL+TP+ +I     V+    MG  +     Y+E++ DI  
Sbjct: 249 LRKLKAVDQSRQEFVSNVSHELKTPITSIR----VLADSLMGMEDVPEELYREFLSDISD 304

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
                  +I+++L L + +    EL+   I++  ++ + +  L+  A+++NIE+  +   
Sbjct: 305 EIDRESKIIDDLLTLVKADKSNAELNVEQININGLLEQILKRLRPIAKKRNIELVLESIR 364

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            +S+   DE  +   + NL+ NAVK+    G VHVT+     +  Y+ + DNG GI++ +
Sbjct: 365 EVSA-DVDEVKLSLALSNLVENAVKYNHEEGWVHVTLDA-DHKFFYVKVSDNGIGISQED 422

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              V   F +   A      G GLGL I +SI+  H G   ++SK  EG      +P 
Sbjct: 423 QEHVFERFYRVDKARSRETGGTGLGLAITKSIILMHQGAIKLQSKEGEGTTFTVRIPL 480


>gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 771

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 6/307 (1%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            V +++ A            +   + +           K  L   ++   +  +    R 
Sbjct: 465 WVDEVAQAVNDLNGSLNILVVCLDITERKKAEEELNRYKTHLETLVQERTAELERANVRL 524

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E +  KS F+A+ SHELRTPLNAI+GF+ +      G L NE  ++ +  ++RS +HLL
Sbjct: 525 QELDRLKSMFIAATSHELRTPLNAIIGFTGMTLQGLSGEL-NEEQQDNLARVYRSAKHLL 583

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LI +I+D+S+IEAG+  +      L ++V E I ++  + + K++ + +++  +L +V+
Sbjct: 584 ALITDIIDISKIEAGKISIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELPAAL-TVY 642

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD K + Q ++NLLSNA KFT  G  +       S     +S+KD+G GIA  ++P +  
Sbjct: 643 ADRKRLLQCLVNLLSNAAKFTEKGRIIV--AARESEGSIELSVKDSGIGIAPQDLPRLFK 700

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNT-RVLNF 480
            F +    ++    G GLGL +   ++     G   ++S+  EG      LP   R +  
Sbjct: 701 PFERLESHLRVQAGGTGLGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLPRDLRRVPE 760

Query: 481 IPEDNHE 487
            P+   E
Sbjct: 761 PPDLREE 767


>gi|219848094|ref|YP_002462527.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542353|gb|ACL24091.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 354

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 143/341 (41%), Gaps = 7/341 (2%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
              + +     + + L+ +AL    +P   F +    V+   T A ++  +  ++ + +L
Sbjct: 14  GAQMLVVIVGVVTLNLTANALLEQTVPPEQFTTVHTAVIQALTIAAIAATIAGLTTSILL 73

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              +        H  +        +        EL       ++  +  E+    +   +
Sbjct: 74  VQVILRSLRSIAHSSQRIAAGRYDERVNVPASDELRAVAESFNQMAEALEQIEQRRVTMI 133

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +++HELRTPL  I G+ E +    +    +     ++  +    + L  L++++  LSR
Sbjct: 134 GNVAHELRTPLAGIEGYLEGLIDGVLPAEAD----TFLE-MKHEVRRLHRLVDDLQTLSR 188

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +EAG+  L  +   + +++R  +  LQ +  +  ++I  +         AD   + Q++L
Sbjct: 189 VEAGQISLHFTTFDINEVIRHVVSQLQPQVLDGCLKIICERTDQPILTRADPDRVAQILL 248

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLL NAV++T  GG + V     +     ++++D G GIA   +P +   F +   +   
Sbjct: 249 NLLGNAVRYTPEGGCITVRSDLVNE-WVKVTVEDTGIGIAPEHLPYIFERFYRADPSRSR 307

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           A  G G+GL IA+ +    GG     S  L +G      LP
Sbjct: 308 ASGGSGIGLTIARHLAWAMGGDITAYSAGLGKGSRFTLTLP 348


>gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB]
 gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 787

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 9/272 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + +           +++L   +          +  AE  N AKS FLA+MSHE+RTP
Sbjct: 363 ARDITERKQVERELAKYRENLEGVVRERTRELTVAKDLAETANRAKSAFLANMSHEIRTP 422

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI G + ++  + +    +E   E +  I  +GQHLL +I+++L LS+IEAGR  L  
Sbjct: 423 LNAITGMAYLMRRDGV----SEKQGERLDRIDAAGQHLLEIIHDVLSLSQIEAGRMTLEA 478

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L  +    + +L   A+ K + + Q+       +  D   +RQ +LN L NAVKFT
Sbjct: 479 KPLDLSVVCTGALEVLADEARRKGLSLRQEFGELPVGLHGDAVRLRQSLLNYLGNAVKFT 538

Query: 384 AIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
              G V +         SG      + D+GPG++      +   F Q   +      G G
Sbjct: 539 EA-GSVVLRCHELSRNDSGHLIRFEVVDSGPGMSPESRTQLFQPFHQVDSSSTRVHGGTG 597

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           LGL I + +    GG     S    G      
Sbjct: 598 LGLVITRRLAQLMGGDAGCDSTPGVGSRFWFT 629


>gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1042

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+E +     E R++AE     K  FLA MSHE+RTP+N ++G   ++    + P+  
Sbjct: 384 AQEMEFSNWALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPM-- 441

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+     S   LL+L+N+ILD S+IE+G++E+      L++++   +  + L+ +
Sbjct: 442 --QKRYVDVASASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLE 499

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402
           E+++ +F  I       V  D   +RQ+++NL+ NA+KFT  G   + ++   +      
Sbjct: 500 ERHLPLFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVL 559

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +S  ++D G GIA+ ++  +   F Q   +      G GLGL IA+ +     G+  +RS
Sbjct: 560 LSCEVEDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRS 619

Query: 461 KLREGVEVIAIL 472
           +   G      L
Sbjct: 620 QQEVGSIFSFTL 631


>gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 674

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 265 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 324

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N      +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 325 EEGQPNYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 381

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V++     
Sbjct: 382 QELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIER-DD 440

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 441 GHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 500

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 501 TSGGRGKGATFTVRLP 516


>gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
 gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
          Length = 609

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + EV +S     R  A     AKS FLA MSHE+RTP+N ++GF+E++    +      
Sbjct: 196 TDEEVMQSELRTARNEANAMAEAKSSFLAKMSHEIRTPMNGVMGFAELLSRSDLSH---- 251

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               ++  I  SG+ L  L+N+ILDLS+IE+G + + E   ++  +V+  I + +  A+E
Sbjct: 252 EQARHVELIRESGKALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEPLARE 311

Query: 346 KNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K I +  ++  +L      D   +RQV+ NL++NA++FT  GG V V V  +       +
Sbjct: 312 KVIGLSSQVSDTLPQFAMLDALRLRQVLSNLVANAIRFTDRGG-VSVIVEPSPSGIA-FT 369

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI E  I  +   F Q      +   G GLGL I++ +    GG+  + S +  
Sbjct: 370 VRDTGTGIPEEMIEAIFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVISTVGL 429

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQY 491
           G   I  LP     +       E   +
Sbjct: 430 GSSFILTLPLVPATSAQIPPRQEPLNF 456


>gi|260778745|ref|ZP_05887637.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604909|gb|EEX31204.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 749

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 154/385 (40%), Gaps = 9/385 (2%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +        G   + +  +L+      +   +    +                  ++   
Sbjct: 68  RGDKELSSDGNEALLQRTMLIDYNLDSVVDGVFD-TQVQVTNGGANYGTIDIGFEVSAIN 126

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           S L++         S   ++VA+ +  + +     +      A  +S          +S 
Sbjct: 127 SMLTSAQKAIIGIASIEVMLVAIFSFFLGTYLTKSLVKLIEAANTVSEQGPGFQLNDQSK 186

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++       DD+  +LE +       R  AE+ N +KSRFLASMSHE+RTP+N +LG  
Sbjct: 187 DELGDVARAFDDMSVKLEKSYHDLKSARFEAEQANESKSRFLASMSHEIRTPMNGVLGIL 246

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++E   +    +   K+ +     SGQ LL++IN+ILD +R+E+    L     +    
Sbjct: 247 NILEESKL----SREQKKLVNTATESGQFLLSIINDILDFTRMESNTLRLEHKPFNFRQC 302

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RV 389
           V   +   Q  A+ +++++   +D S+ + V  DE  ++Q++ NL+ NA+KFT  G   +
Sbjct: 303 VENVVETFQPSAKVRSLDLNCILDGSVPANVQGDENRVKQILHNLIGNAMKFTKEGSVTI 362

Query: 390 HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V      G    I   + D G GI    +  +   F         +++G GLGL I + 
Sbjct: 363 QVHADTHEGNQVKIVCKVIDTGVGINRSAMDYLFDEFTMVDQTYSRSQEGSGLGLAICKR 422

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +     G     S    G      +
Sbjct: 423 LCELMDGYIEAESTPSIGSTFSFSI 447


>gi|119504270|ref|ZP_01626350.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119459778|gb|EAW40873.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 819

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 119/273 (43%), Gaps = 20/273 (7%)

Query: 222 DDLIAELEVAKSLSDETRKRAE---------EENLAKSRFLASMSHELRTPLNAILGFSE 272
           D L+       S   E    AE             AKS FLA+MSHE+RTP+N ++G  E
Sbjct: 128 DALVEAQRTIVSQLSEEELMAELQEAKEEAEVAAQAKSEFLANMSHEIRTPMNGVVGMIE 187

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++ L  +    +    E +  I  SGQ LL +IN+ILD S+ EAG+ E+ E   +L+  +
Sbjct: 188 LLNLTKL----DAEQHEMLQTISDSGQSLLTIINDILDFSKFEAGKLEIEEIETTLVTFL 243

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                 L   A + +++I           +  D     Q+++NL SNA+KF+  GG V V
Sbjct: 244 ESTAQTLAPSALKNDVQIIVHAAAGTPDQLMLDPVRTGQILINLASNAIKFS-DGGEVLV 302

Query: 392 TVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                           +S+ D G GI+      +   F Q   +      G GLGL I++
Sbjct: 303 KAERIDPTHEDKTSLRLSVVDQGIGISAEAQKNLFQDFSQADSSTTRKYGGTGLGLAISK 362

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +    GG   ++S   EG      +P + V  
Sbjct: 363 RLTEMMGGTIGVKSCPGEGSTFYCEIPFSVVSE 395


>gi|328861455|gb|EGG10558.1| hypothetical protein MELLADRAFT_47091 [Melampsora larici-populina
           98AG31]
          Length = 1140

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I + Q+  + ++ +L  A   + + ++ AE  +LAKS+FLA+ SHE+RTPLNAI+G   
Sbjct: 603 DIRALQSNINTMVTKLRTAFESNVKAKEAAEAHSLAKSQFLANTSHEIRTPLNAIIG--- 659

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +  +T+G       +E +  +      LL +IN+ILD+++IEAGR  L     SL +++
Sbjct: 660 -LTFDTLGSNLTREQRENLNLVRGQADALLRIINDILDITKIEAGRMALERCPFSLREVI 718

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E +  L   A  KNI++F +I P++   V  D   + QVI NL+ N+ KFT   G + +
Sbjct: 719 FEALTSLAFGAAAKNIDVFFEIHPAVPDLVLGDGSRLGQVIKNLVGNSQKFT-KSGSITL 777

Query: 392 TVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           T    +            + D G GI + ++  +  SF Q   ++     G GLGL I++
Sbjct: 778 TADLVARDDEGRSRVQFHVIDTGIGIEKDKLQRIFDSFMQADGSVTRKYGGTGLGLTISR 837

Query: 447 SIMANHGGQFLIRSKLREGVEVIA 470
           +++   GGQ  + S++  G + + 
Sbjct: 838 NLVQMMGGQLNVESEVERGSDFVF 861


>gi|294508548|ref|YP_003572607.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294344877|emb|CBH25655.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 766

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               E+      L+ AK  ++ ++  AEE +  KS  LA+MSHE+RTPL  I+GF+E I 
Sbjct: 490 RDITERKRKARRLKEAKEQAELSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIG 549

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E  G   +     +   I  SG+ LL+ ++ +L+LS++EAG+  L    I L D  ++ 
Sbjct: 550 DEIDG---DGGVAHFADLIEDSGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLADQAQQV 606

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A +  + +  + + + +   ADE G++ V+ NLLSNA+K+T   G V V    
Sbjct: 607 AREFAAEADDSGLALEVEAEEAGAR--ADEGGLQIVLQNLLSNAIKYTEE-GTVQVRTYR 663

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + I+D G G+      ++   F QGS  +    +G G+GL + +      GG 
Sbjct: 664 -EDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGS 722

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + ++  EG    A LP  
Sbjct: 723 IDVETEKGEGSTFTARLPAA 742


>gi|54294995|ref|YP_127410.1| sensor histidine kinase [Legionella pneumophila str. Lens]
 gi|53754827|emb|CAH16314.1| sensor histidine kinase [Legionella pneumophila str. Lens]
          Length = 816

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  ILG  E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P      +  +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKKLPS---FVQNTLRHIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+ +     +   L     D   M+ V++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKLVFSMDLPDEL-QAQIDPDKMQHVLINILSNAIKFTPQNAKVRIRLVQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +     + I+DNGPGI      T+   F Q          G GLGL IA+  +  HGG 
Sbjct: 338 INPETCRLQIEDNGPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L       G      LP  
Sbjct: 398 ILAGDARNGGAIFTIELPLK 417



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 20/311 (6%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P +  +     +  H L +    ++ TA +        L +     +       +  A
Sbjct: 519 MMPHMSGVEMVHAIREHPLLLKTPIIILTAKADDELTARMLEEGAQDYVIKPFSAKEFKA 578

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
              VA  +     K+AE+      +F+   SH+L+ PL A+      I  E +G + +E 
Sbjct: 579 --RVANLILV---KKAED---ELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQ 629

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+Y+  + +    +  L++ +L  +  ++G        I    ++ + I  L       
Sbjct: 630 SKKYLLLLRQRASRMSKLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP----- 682

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISI 405
              +  +++ +L  +   E  +R+V   LL N+++      G + +       R     +
Sbjct: 683 PQTVTFQLEDTLPVLNTCELPLREVFTALLDNSIRHHHSKDGHIIIGTK-EKDRFYEFFV 741

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+GPGI +     +   F       K      G+GL IA+ I+   GG+  + S+  +G
Sbjct: 742 ADDGPGIEKKYQDRIFQLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKG 799

Query: 466 VEVIAILPNTR 476
                + P  +
Sbjct: 800 SVFRFLWPKDK 810


>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae NTUH-K2044]
 gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 946

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 449 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 505 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 564

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V   +G    IS++D 
Sbjct: 565 LYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQC-AGDYLQISVRDT 622

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G   
Sbjct: 623 GEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRF 682

Query: 469 IAILPNTRVLNFIP 482
              +P   V N  P
Sbjct: 683 TIRIPLYGVQNTSP 696


>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
 gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP +   +  D   ++QVI NLLSNA+KFT   G + + V   SG    I ++D 
Sbjct: 567 LYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQC-SGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +  + 
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVER 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|161503513|ref|YP_001570625.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864860|gb|ABX21483.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 936

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 166/399 (41%), Gaps = 20/399 (5%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQI---AIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
              +K+      +     W+       +     G  W+ + L   G  +   L       
Sbjct: 254 YASQKIRTRLENVTLHDGWQQIPGFLILRTTLHGPGWSQVILYPYGNLSSRILKT----- 308

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
            +I      L+  +L  + F      ++A      +       +              + 
Sbjct: 309 -IIQQIPFTLTALVLMTSTFCWLLHSLLAKPLWHFVDAINKTATEPLSTRLPEERQDELG 367

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +  N  + + Q + D+L +++       +E +KRAE+ N  KS  L  +SHELRTP+
Sbjct: 368 SIAYAFNQLLNTLQVQYDNLESKVAERTHALNEAKKRAEQANKRKSIHLTVISHELRTPM 427

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N +LG  E+++   +    N   +            LL LIN +LD SRIE+G + L   
Sbjct: 428 NGVLGAIELLQTTPL----NIKQQGLADTARYCTLSLLTLINNLLDFSRIESGHFTLHME 483

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
             +L+ ++ + +  +Q  AQ K + +   +   +      D   +RQ+++NLL NAVKFT
Sbjct: 484 ETALLPLLDQTMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDAIRLRQILVNLLGNAVKFT 543

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG + +TV   + +  ++ + D+G GI   + P + T+F Q      +  QG G+GL 
Sbjct: 544 ETGG-IRLTVKRHAEQLIFL-VSDSGKGIEIQQQPKIFTAFYQAD----TNSQGTGIGLT 597

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           IA S+    GG+  I S    G  +  +LP        P
Sbjct: 598 IASSLAKMMGGELKIDSIPGVGTCISLVLPLQEYQPPQP 636


>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 431 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 486

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 487 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 546

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    IS++D 
Sbjct: 547 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSISVRDT 604

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 605 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 664

Query: 469 IAILPN 474
              +P 
Sbjct: 665 TLRIPL 670


>gi|149190210|ref|ZP_01868485.1| sensor protein LuxQ [Vibrio shilonii AK1]
 gi|148835957|gb|EDL52919.1| sensor protein LuxQ [Vibrio shilonii AK1]
          Length = 864

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 156/333 (46%), Gaps = 18/333 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------ 229
               ++     +  A M AT       I   +F+ ++  +  + +   ++++ +      
Sbjct: 404 FVLFVNEMTPLVMKASMGATLTGIDVPIGEKVFRWSLSAIQTRDDSTLVLSQGQDITKLV 463

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+  S + RK AE    A++ FLA MSHE+RTPLN ILG S++++       ++  Y+E
Sbjct: 464 EAEKQSIKARKEAEWSAKARTDFLAKMSHEIRTPLNGILGISQLLKQGG----DDGKYQE 519

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            I  +  SG+HLL ++N+ILD S+IE G ++L +      +++     + +     KNIE
Sbjct: 520 QIEVLCNSGEHLLAVLNDILDFSKIENGSFKLEKHNFKFKEVITAIEGIYKPLCDHKNIE 579

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYI 403
           +  +      +++  D+  + Q++ NL+SNA+KFT   G V V+        T      I
Sbjct: 580 LVIQNGLNENTALNTDQVRLNQILFNLVSNAIKFTHK-GHVKVSFALKTTDSTKTNWLTI 638

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   +I  V   F Q    +     G GLGL I ++++    GQ  + S++ 
Sbjct: 639 QVEDTGIGILSNQIQQVFDPFVQSEATLTREYGGSGLGLAIVKNLVTIFDGQINVSSEVG 698

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST-QYKCYA 495
            G      LP    +    +   E+   +  ++
Sbjct: 699 RGTRFEVRLPVETAIGQAEQSVEETVIDFNLFS 731


>gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 678

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 269 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 328

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 + Y + +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 329 ---EEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 385

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V +     
Sbjct: 386 QELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER-DD 444

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 445 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 504

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 505 TSGGRGKGATFTVRLP 520


>gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
 gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
          Length = 748

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 14/252 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++  +      RK AE+  L K  FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 506 IQEIKDKEEELIRARKLAEQAEL-KQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISE 562

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  + + LL L+N++L+LSRIE+G         S            Q+   
Sbjct: 563 EEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIIL 622

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
              +E  ++      ++  D   + QVI N L NA KFT+ G   H+ +G+      +  
Sbjct: 623 PP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEI 678

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +  ++D G GI + E+  +   F +         QGVGLGL I++ I+    G   ++S+
Sbjct: 679 HFFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSE 734

Query: 462 LREGVEVIAILP 473
           + +G    A+LP
Sbjct: 735 VNKGSRFTAVLP 746


>gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D4]
 gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides
           dorei 5_1_36/D4]
          Length = 748

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 14/252 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++  +      RK AE+  L K  FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 506 IQEIKDKEEELIRARKLAEQAEL-KQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISE 562

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  + + LL L+N++L+LSRIE+G         S            Q+   
Sbjct: 563 EEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIIL 622

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
              +E  ++      ++  D   + QVI N L NA KFT+ G   H+ +G+      +  
Sbjct: 623 PP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEI 678

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +  ++D G GI + E+  +   F +         QGVGLGL I++ I+    G   ++S+
Sbjct: 679 HFFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSE 734

Query: 462 LREGVEVIAILP 473
           + +G    A+LP
Sbjct: 735 VNKGSRFTAVLP 746


>gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
 gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
          Length = 757

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 14/252 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++  +      RK AE+  L K  FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 515 IQEIKDKEEELIRARKLAEQAEL-KQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISE 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  + + LL L+N++L+LSRIE+G         S            Q+   
Sbjct: 572 EEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIIL 631

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
              +E  ++      ++  D   + QVI N L NA KFT+ G   H+ +G+      +  
Sbjct: 632 PP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEI 687

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +  ++D G GI + E+  +   F +         QGVGLGL I++ I+    G   ++S+
Sbjct: 688 HFFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSE 743

Query: 462 LREGVEVIAILP 473
           + +G    A+LP
Sbjct: 744 VNKGSRFTAVLP 755


>gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 728

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 158/257 (61%), Gaps = 2/257 (0%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              ++  +  +   +  RK AE  +  KS FLA +SHE+RTPLNAILGF+EVI  E  GP
Sbjct: 473 LRDMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIRTPLNAILGFTEVIMDERFGP 532

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           + NE YK+Y+ DIH SG  +++L+N++LDLS+IEAG+ +L   A+    I+ +C+ ++Q 
Sbjct: 533 IGNERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDLDFVAVDTNQIIADCVSLMQP 592

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           +A  + I +   + P+L  + ADE+ +RQ++LNLLSNAVKFT  GG+V V          
Sbjct: 593 QANREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVKFTEPGGQVMVATKLMEDGKT 652

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I+D G G++E EI   L  F Q S +  +  QG GLGLP+ ++++  +   F I SK
Sbjct: 653 LIRIRDTGAGMSEEEIGIALEPFRQLSTSRSN--QGTGLGLPLTKALVEANRASFSISSK 710

Query: 462 LREGVEVIAILPNTRVL 478
            +EG  V  + P+ R L
Sbjct: 711 KQEGTVVEILFPSARAL 727


>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
 gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
          Length = 1610

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 134/304 (44%), Gaps = 36/304 (11%)

Query: 203  ITYHLFKSNVKILSCQAEKDDLIA---ELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            +         +  + Q +   L     E++  +   +   +  E  +  KS FLA+MSHE
Sbjct: 855  LEERTKDLEQQKANIQQKNLALEKTQVEMKKTQVALETKARELELASRYKSEFLANMSHE 914

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LRTPLN++L  ++++     G L ++   EY   IH +G  LL LINEILDLS++EAGR 
Sbjct: 915  LRTPLNSLLILAQLLTENRAGNLTDKQV-EYAKTIHSAGSDLLTLINEILDLSKVEAGRI 973

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378
            E+   A+S  D+V       +  A E+ +E    +   L  +   D + ++Q++ NLLSN
Sbjct: 974  EVHAEAVSFTDLVEMIEQKFRHVAAEQKLEFQITVANDLPPILHTDRQRLKQILNNLLSN 1033

Query: 379  AVKFTAIGGRVHVTVGWTSGRG------------------------------QYISIKDN 408
            A KFT+  G V + + +                                      S+ D 
Sbjct: 1034 AFKFTSQ-GAVKLDIQFLGENTPGYSQQEGVRGRTTPGDFQPDGIKGREKSQIAFSVTDT 1092

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   +  TV  +F Q   +      G GLGL I++ +    GG  L+ S+  +G   
Sbjct: 1093 GIGIPTDKQETVFEAFQQVDGSTSRRYGGTGLGLSISRQLARLLGGDILLHSEADKGSTF 1152

Query: 469  IAIL 472
               +
Sbjct: 1153 TLYI 1156


>gi|27378360|ref|NP_769889.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27351507|dbj|BAC48514.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 897

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 160/379 (42%), Gaps = 16/379 (4%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPG-TWTPEYLTIYKSATLLIAL-SISALSNFMLPYAVF 164
           +  L        L W +   +     + P Y +I +S  LL+AL + + L +  L   + 
Sbjct: 257 QRVLSTYATVPSLGWLVFVELPLTEAYAPIYASIGRSTFLLVALLACAVLVSLFLSRRMT 316

Query: 165 LSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           +    +   A    +      L I     L      F  +  HL +S   +     E+  
Sbjct: 317 VPIQILTQGARRIGSGDLGLRLAIKTGDELEALGDQFNRMAAHLRESYATLERKVIERTS 376

Query: 224 LIAELE----VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            + +           ++  R  A + N  KSRFLA +SHELRTPLN ++G  ++++  ++
Sbjct: 377 ELEKARDHALAEHDAAERARSIAVQANETKSRFLAVVSHELRTPLNGVMGVLQLLDDGSL 436

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G    E  + ++     SG+ L+ L++ IL+ +R+EA    L      L  ++     ++
Sbjct: 437 G----EAQRRHLATAAASGETLIALVDAILEYARLEASAETLEMRDFRLDQLIEAAADLM 492

Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           + +A  K +      D ++ +SV  D   + +++LNL+ NA+KFT  GG + +       
Sbjct: 493 RPQAFGKGLTFDLASDVTVNTSVHGDPVRLNRILLNLIGNAIKFTPRGG-IGLKASAEQH 551

Query: 399 RGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I+++D G GIA      +   F Q   +I     G GLGL IA+ +     G+
Sbjct: 552 EDHILLSITVRDTGIGIAPDMHERIFEDFVQADDSIARRFGGTGLGLAIARRLTRLMRGE 611

Query: 456 FLIRSKLREGVEVIAILPN 474
             + S    G      +P 
Sbjct: 612 LTVESTPGAGSTFALEVPL 630


>gi|209809112|ref|YP_002264650.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010674|emb|CAQ81061.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 755

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 133/258 (51%), Gaps = 13/258 (5%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E R  AE  N +K RFLASMSHE+RTP+NA+LG   +++   + P      ++ +   
Sbjct: 227 LKEARIEAESANESKGRFLASMSHEIRTPMNAVLGLLAILKDSQLKP----KQRDLVETA 282

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S + LL++IN+ILD SR+EA  ++L     ++   +   +   Q +A +K +++   +
Sbjct: 283 TDSSELLLSIINDILDCSRMEANTFDLDNKTFNMHACLHHALHSFQAQADKKELQLTLSL 342

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYIS--IKDNGP 410
             ++   +  D    RQ++LNL+ N++KFT   G + +++          ++  +KD+G 
Sbjct: 343 SDNVPEYICGDVNRFRQILLNLIGNSLKFT-DNGFILLSLDIQPVEDRFALTCIVKDSGI 401

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++  +   F     +   + +G GLGL I + ++    G   ++S+  +G E + 
Sbjct: 402 GIKAEQLDLLFEEFTMADNSFSRSHEGSGLGLAITKRLINMMDGAISVKSQYGKGSEFMF 461

Query: 471 ILPNTRVLNFIPEDNHES 488
            +    +L+   E++ ES
Sbjct: 462 NI----MLDSASEEDIES 475


>gi|49480228|ref|YP_034908.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331784|gb|AAT62430.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 463

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 12/289 (4%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              LA  +   L   T+    +   N    + +  +D++    +    ++DE +K     
Sbjct: 145 SYLLAKRIVRPLQEVTHAAKEMALGNFDTKAEKHHEDEVGHLADTLNFMADEIQKN---- 200

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K+ F++S+SHELRTPL +I G+SE +        + E  +  I  I +    L+ L+
Sbjct: 201 DKLKNEFISSISHELRTPLTSIKGWSETLVSGEF--QDPEETRLGINIISKETDRLIGLV 258

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++LD S++++G  ++S   + L  +V+E           K I +  + +     +  D 
Sbjct: 259 EDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPIHIMGDG 318

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++Q+++N + NA+KFT  GG + V++    G+   I+++D G GI    +  V   F 
Sbjct: 319 NRIKQILINSIDNAMKFTPQGGVITVSLKQ-EGKEALITVQDTGEGIPPEILKHVTEKFF 377

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +G     ++ QG GLGL I + +    GG+  I S   EG  +    P 
Sbjct: 378 KG-----TSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFPL 421


>gi|320103563|ref|YP_004179154.1| integral membrane sensor hybrid histidine kinase [Isosphaera
           pallida ATCC 43644]
 gi|319750845|gb|ADV62605.1| integral membrane sensor hybrid histidine kinase [Isosphaera
           pallida ATCC 43644]
          Length = 687

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/469 (21%), Positives = 173/469 (36%), Gaps = 19/469 (4%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
            EI  +      R   I+  FVL    I  W          S+      AA     + ++
Sbjct: 25  AEIAAIMTPIHRRGDRIVGWFVLAHLVIALWLAAFSEVWALSIGVSFCAAAMFFGTRLLL 84

Query: 95  NSDIKIGEVYV-WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-----IYKSATLLIA 148
              +    V        ++  I      + +      + T   +       +    L+I 
Sbjct: 85  PGSLTTRCVAGIALNLFVILHIYQMHGLSEMHFWYFTSMTMLIIYQDWRCFWPGTVLIIL 144

Query: 149 LSISALSNFMLPYAVF--LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
             I       L  A    L+  P+V  +              +             +   
Sbjct: 145 QHILFAWLQNLGPAELKELTAAPLVGGMLGTLAGFQFFEKAFIGFWQLVFHFAIAILQAT 204

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      +L  Q  ++         +       + A+E N AKS FLA +SHE+RTPL A
Sbjct: 205 LCGMWAWMLRRQTLRNA------AREQELSRAWRLADEANEAKSLFLACVSHEIRTPLTA 258

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG + ++  +           + +  I RSG+HL  LIN+I+D+S++E     +    +
Sbjct: 259 ILGHTSILLEDPKVRRRLGYRVKRLEIIKRSGEHLSVLINDIIDMSKVERNLIRVDPEPV 318

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           ++   VRE   +++ RA  K + +  +    +   V  D   +RQ+++NLL NAVKFT  
Sbjct: 319 AIAQAVRETAALIRPRASAKGLSLGVEFAGPIPEVVRVDPVRLRQILVNLLGNAVKFTTR 378

Query: 386 GGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           GG V + V +   R    +SI D G G+    +  +   F +        E G GLGL I
Sbjct: 379 GG-VTLRVEYLRERHILALSIHDTGRGLEPHHLERLFRPFTRLGN-TDDPEGGAGLGLAI 436

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHESTQYK 492
           ++ +    GG   + S+   G      LP            + E +  +
Sbjct: 437 SKRLAELLGGDITVESQPGRGSCFTLELPVRPDEAQRQILPDSEPSDLR 485


>gi|258509807|ref|YP_003172558.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257149734|emb|CAR88707.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259651070|dbj|BAI43232.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 636

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  +  F++++SHELRTPL ++  + E +        + +   +++         ++ +I
Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344
           N++L LSR+++G  + +   ++L +     +                        Q   Q
Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K   I ++I      V  D     QVI N+++NA+K++  GG +   +         +S
Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQMHDH-VILS 553

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI   ++  +   F +   A    + G GLGL I++ ++    G+  + S+   
Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613

Query: 465 GVEVIAILPNTRVLN 479
           G      LP   + +
Sbjct: 614 GSTFYISLPYEPITD 628


>gi|126731224|ref|ZP_01747031.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
 gi|126708135|gb|EBA07194.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
          Length = 345

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A++GF E ++       +      ++  +      + 
Sbjct: 109 EQIGQMRRDFVANVSHELRTPLTALIGFIETLKGPARD--DPVGQARFLSIMESEAARMN 166

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LI ++L LSR+EA       + I   +I R  +  L+  A+E  +++   +  +  ++ 
Sbjct: 167 RLIGDLLSLSRVEADERVRPTTRIDPAEIARSTLHGLRPIAEEAGVKLDLSVPATPVTIP 226

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEGE 416
            DE  +RQV+ NLL NA+K++  G  V V +          GRG  +++ D GPGI +  
Sbjct: 227 GDEDQLRQVLTNLLENAIKYSGRGATVTVALNAVEYEPRVRGRGVRLTVSDTGPGIDQIH 286

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P +   F +          G GLGL I + I+  H G+  + S+L +G     ILP 
Sbjct: 287 LPRLTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGKGTTFTVILPA 344


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1131

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 233 SLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              DE R+RAE   E + AK+ F +++SHE RTPL  +LG  E +  ++   +  E    
Sbjct: 349 RAYDEERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSERAIRPEN-HH 407

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +   +R+G  LL L+N +LD SRIEAGR  +S  A  L+    E   + +    +  + 
Sbjct: 408 LVEVAYRNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRSATDKAGLR 467

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  + D     V+ + +   +++LNLLSNA KFT  GG + + +    G G  +S++D G
Sbjct: 468 LEIESDALPHRVYVNREMWEKIVLNLLSNAFKFTFEGG-ITIAL-RDGGDGVAVSVRDTG 525

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   E+P V   F +   A   + +G G+GL + Q ++  HGG   + S++ +G    
Sbjct: 526 VGIPPNELPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESEVGKGTTFH 585

Query: 470 AILP 473
             LP
Sbjct: 586 IHLP 589



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 26/248 (10%)

Query: 239  RKRAEEENLAKS-------RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            RK AE+  L +S       R  A+++HE+  PL AI   +  + L        E+ +EY+
Sbjct: 896  RKNAEDA-LLRSEKLASVGRMAATIAHEINNPLEAI---TNTLFLALHAQDLPESAREYL 951

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                   + + ++  + L   R E+         I+L  ++   + +L+ R + KN+ + 
Sbjct: 952  EMADGELRRVAHITRQALGFYR-ESNA----PRQIALNAVMDSTLDLLKNRIRTKNVTVE 1006

Query: 352  QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGP 410
            ++ D  +    A    MRQV  NLL N++     GG + V +          ++I D+G 
Sbjct: 1007 KQWDGDV-HAEAVAGEMRQVFSNLLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGK 1065

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLR--EGVE 467
            GI       +   F            G GLGL + + I+  HGG+  + S       G  
Sbjct: 1066 GIEANFRERIFEPFF-----TTKGAVGTGLGLWVTRQIVEKHGGRIRVHSLTSGDQRGTS 1120

Query: 468  VIAILPNT 475
               +LP  
Sbjct: 1121 FSIVLPVQ 1128


>gi|304412836|ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348799|gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 1629

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
               D     +       +      + +     ++     +  I E    +    E +  A
Sbjct: 834  DQYDPIFRVVRTDGTIRYVQAGAQIERDVTGQVTKVIGINLDITEQRQLEETLREAKHEA 893

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            +  N AKS FLA+MSHE+RTP+NA+LG  ++++  +M        ++Y+     + + LL
Sbjct: 894  DAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVTKTQTAAKSLL 949

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
             L+N+ILD S+I+AG+  L     S+  ++R+  I+L      KN+E+   +DP+L   +
Sbjct: 950  GLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPALPAWL 1009

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEI 417
             AD+  ++Q+++NL  NA+KFT   G+V VT+             ISI D G GI+E +I
Sbjct: 1010 LADQLRLQQILVNLAGNALKFT-RHGQVTVTMECLRHEANTVTVQISISDTGIGISEEQI 1068

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              + T F Q   +      G GLGL I++ ++   GGQ  + S++  G     
Sbjct: 1069 ERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121


>gi|153852897|ref|ZP_01994334.1| hypothetical protein DORLON_00316 [Dorea longicatena DSM 13814]
 gi|149754539|gb|EDM64470.1| hypothetical protein DORLON_00316 [Dorea longicatena DSM 13814]
          Length = 440

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           T    +M V  +     +         + + + +    I     E        E    L 
Sbjct: 147 TAFRTAMKVFPVMGLIAVIMLAFASALVKWQVTRLIRPINRLDLENPLENDVYEELTPLL 206

Query: 236 D----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + +++    N+ K  F A++SHEL+TPL +I G++E+++   + P   E    + 
Sbjct: 207 QSIDKQNKEKDAVANMRK-EFSANVSHELKTPLTSISGYAEIMKNGLVKP---EDMTGFA 262

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L+ L+ +I+ LS+++ G  EL +  + L  + RE +  L  +A ++ + + 
Sbjct: 263 ERIYNEASRLITLVEDIIKLSKLDEGNVELEKEEVDLYKLTREILTRLSPQAAKRKVHVE 322

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              +P         + + ++I N+  NA+K+   GG++ V VG T    + I + D G G
Sbjct: 323 VTGEP--VEYVGIRQILDEMIYNICENAIKYNKEGGKLTVWVGNTLQGKK-ICVTDTGIG 379

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E E   +   F +   +      G GLGL I +     HG +  + SKL EG ++  I
Sbjct: 380 IPENETDRIFERFYRVDKSHSKETGGTGLGLSIVKHGAMLHGAKIHVDSKLGEGTKIELI 439

Query: 472 L 472
            
Sbjct: 440 F 440


>gi|288554259|ref|YP_003426194.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288545419|gb|ADC49302.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 471

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +++    +SHELRTPL    G+ E++        + E   +Y+  +++    L  LI
Sbjct: 238 EQQRTQLFVDISHELRTPLTYFKGYVEILLNGE--AKSEEDKVKYLTLLYKQSGRLQRLI 295

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++ DLS +E   + L E+ ISL  ++   + ++    ++K IE+  ++ P    +  DE
Sbjct: 296 QDLFDLSTMEQKGFTLQETQISLETVMINALDLIGPSIEQKEIELHVQLSPFPIYILGDE 355

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++QVI+NLL NA K+++ GG + V + +       I + D G GI + +I  +     
Sbjct: 356 YRLQQVIINLLENAKKYSSAGGVIKV-LTYKDNNNCIIEVIDYGIGIPKKDIHRIWERLY 414

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +      G GLGL I + I+  HGGQ ++ S+  +G     ILP
Sbjct: 415 RVDKSRSRETGGSGLGLTICKRIIELHGGQIIVESEEGKGSTFKIILP 462


>gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 577

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 180/448 (40%), Gaps = 25/448 (5%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110
            + + V+ +     W   +    +W  ++ AV      L   V          + W + L
Sbjct: 98  PVAMLVVALPFEAWWIGASRRAALWGAVSAAVAILAQPLAGTVFPFAGAQIAAWHWLVPL 157

Query: 111 LVGQIAI---GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM-LPYAVFLS 166
                 I             +          I  +  L +A     L         + L 
Sbjct: 158 AWTLTLIPRASAFQNTADAADVLDTADRLEDIIDAVVLRVARHGEVLDASPKARTLLKLP 217

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF----KSNVKILSCQAEKD 222
              +        +     +    A       +    +   +      + +   + +    
Sbjct: 218 PELLSGNGLFDRVHLSDRVSYLSAMADMRDGALSRRLELRIRLPQNGNGLTADNYRPFSL 277

Query: 223 DLIAELEV-------AKSLSDETRKRAE---------EENLAKSRFLASMSHELRTPLNA 266
           DL+   E         +   +  R R +            +AK RFLA +SHELRTPLNA
Sbjct: 278 DLVRGEEQGDVFTFVLRQNDEIARLREDLAAANEAAASAEVAKGRFLAVVSHELRTPLNA 337

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS+++  E  G   +   KEY+G +  SGQHLL ++  ILD+SRIE+G Y       
Sbjct: 338 IIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVSRIESGVYATEPEPF 397

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
              + V  C  M+QL+AQ KNI++  +I P    + AD++ ++Q+++NL+SNA+KFT  G
Sbjct: 398 RFAEAVDMCQSMMQLQAQAKNIDLQAQIAPDAGDINADQRAVQQMLINLVSNAIKFTPDG 457

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V V      G   +  ++D G GIAE +   +   F Q         +G GLGL + +
Sbjct: 458 GDVVVGAKRI-GSRLHFWVRDTGIGIAEEDFANLGKPFMQIQNDYTRRFEGTGLGLSLVK 516

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++A H G   I S   EG  V   LP 
Sbjct: 517 GLVALHEGTMSIESMPGEGTTVTISLPV 544


>gi|295092100|emb|CBK78207.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 484

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           ++   V+ +         L  F  +   L       L      D      E+++++S +T
Sbjct: 190 LVVFWVVAVFGLLAAGLLLKPFIRLKKVLGAVAEGDLEQDIRVDTYRETKEISEAVS-QT 248

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            ++ +  + ++  F++++SHEL+TP+ +I   ++ +    M  +  E Y+E++ DI    
Sbjct: 249 LRKLKAVDQSRQEFVSNVSHELKTPITSIRVLADSLM--GMEDVPEELYREFLSDISDEI 306

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
                +I+++L L + +    EL+   I++  ++ + +  L+  A+++NIE+  +    +
Sbjct: 307 DRESKIIDDLLTLVKADKSNAELNVEQININGLLEQILKRLRPIAKKRNIELVLESIREV 366

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           S+   DE  +   + NL+ NAVK+    G VHVT+     +  Y+ + DNG GI++ +  
Sbjct: 367 SA-DVDEVKLSLALSNLVENAVKYNHEEGWVHVTLDA-DHKFFYVKVSDNGIGISQEDQE 424

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            V   F +   A      G GLGL I +SI+  H G   ++SK  EG      +P 
Sbjct: 425 HVFERFYRVDKARSRETGGTGLGLAITKSIILMHQGAIKLQSKEGEGTTFTVRIPL 480


>gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
 gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
          Length = 1227

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 130/338 (38%), Gaps = 16/338 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDL 224
                +  +     +   L + L      A +    ++  L         +   A +   
Sbjct: 265 IATADLPGAVPPDAAGQALLLPLTATNEPAGALLLGVSRRLPFTDDYRDFVDLVAAQVSR 324

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLN 283
               + A              + AK+ F A++SHE RTPL  +LG   E++    +    
Sbjct: 325 AVGKQRAYEQERARAAELAALDRAKTNFFANVSHEFRTPLTLVLGPMEEMLADREL---- 380

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E Y + +  +HR+G  LL L+N +LD SR+E+GR         L D         +   
Sbjct: 381 PERYLDRLTVMHRNGLRLLKLVNTVLDFSRLESGRLAARYQPTDLSDYTSRLASTFRSAT 440

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +   + +     P  + V+ D     +++LNLLSNAVKFT   G + V V         +
Sbjct: 441 ERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLLSNAVKFTFD-GEIRVRV-RADDGAAVL 498

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GIA  E+P V   F + + A     +G G+GL + + ++   GG     S + 
Sbjct: 499 EVTDTGVGIAPEELPQVFERFHRVAGARSRTHEGTGIGLALVRELVEMQGGTVTAHSVVD 558

Query: 464 EGVEVIAI-------LPNTRVLNFIPEDNHESTQYKCY 494
            G             LP  RV    P    E  Q + Y
Sbjct: 559 RGTTFTVTMPFGYAHLPADRVAALSPVPLTEPEQARLY 596


>gi|242217331|ref|XP_002474466.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
 gi|220726381|gb|EED80332.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
          Length = 1160

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 169/468 (36%), Gaps = 56/468 (11%)

Query: 17  SPTGDHLGLEY--PSKMDFD-REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP 73
             T   L  +        F  R     H ++      +  L  L  A  G          
Sbjct: 428 RETRLRLKAQAQERPPPTFGLRYWAKTHWKT------VTGLLALRAAVWGMALVLMHYCG 481

Query: 74  MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ--IAIGLCWTLLTLVEPGT 131
           MW++                       G    W + ++V    +A  +C      +E   
Sbjct: 482 MWAMHI--------------------PGGHISWNLGIVVLSYVVAFAMCLVACIFMEHMD 521

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                   + +     A    ++    +  A F +  P     +              + 
Sbjct: 522 VHFGRQVAFSTIA---AFGCCSMHYTGMAAATFYTSSPPGPPEA-------GYPQYLHST 571

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++  A+         L ++ +   +  AE   ++ +  + + +++  ++ AE  N  K +
Sbjct: 572 IIGIAVCVCVVSNVVLAQNAITARNRMAEM--ILTKRRLWRIMAE--KEAAERANEVKQQ 627

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++  SHE+RTP++ + G+ E++   T+    +E    YI  I ++   +  +   +LD 
Sbjct: 628 FISVASHEIRTPMHTVNGYCELLARTTL----SEEQTVYIASIQQACHAINVIAGNVLDF 683

Query: 312 SRIEAGRYELSESAI--SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           S+++    ELS   +   L  ++ +     ++++    ++I   +   + + V+ DE   
Sbjct: 684 SKLDRNNVELSARPVLMQLRKVLEDLA---RIQSNIPGVDIIISVASDVPTTVYLDETYT 740

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +V++NLLSNA KF    G + VTV           ++D G GI       +   F Q  
Sbjct: 741 FRVLMNLLSNAQKFCDK-GYICVTVSMNGPGQLVFQVRDTGCGIPASFRSALFEPFRQAD 799

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            ++  + +G GLGL I + ++    G     S    G      LP   
Sbjct: 800 TSLTRSREGTGLGLSIIKHLVQRMNGSVEAESTEGLGSTFTVKLPVAP 847


>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 864

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 134/268 (50%), Gaps = 8/268 (2%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + E  DLI          +  + +AE    AKS FLA+MSHE+RTPLN I+G S+++  
Sbjct: 321 YKDEIADLIYSFNQETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTE 380

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P+      EY+  I  S Q LL LIN+ILDLS+IE+G   +     ++ ++  + +
Sbjct: 381 TDLTPV----QSEYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTL 436

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVG 394
            ++  +A EK + +   +   L   V  DE  +RQ+++NL+SNAVKFT  G  +  +   
Sbjct: 437 TVILSKATEKGLALQIDLANDLPELVMLDEHRLRQILMNLMSNAVKFTQDGAVILSINYQ 496

Query: 395 WTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                    + S+KD G GI++ +   +   F Q   +I     G GLGL I + ++   
Sbjct: 497 QKENGRGLLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEML 556

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GG+  + S+   G +   IL    V   
Sbjct: 557 GGELKVDSEKGFGSKFHFILDVEVVEPT 584


>gi|295428067|ref|ZP_06820699.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128425|gb|EFG58059.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 583

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    L++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSLNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++        ++
Sbjct: 272 IQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADSD 327

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  +   L+ LIN+ILDLS+IEA   ++S   + + +++      ++LR  
Sbjct: 328 EERKGYYEIIKTNNLLLMQLINDILDLSKIEADAIKISYEPVDINELMDTTFASIKLRMP 387

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  +++F +          D   + Q+I NL +NA+K T   G + +       +     
Sbjct: 388 E-GVQLFLEKGSCTCRFGTDSIRLLQLINNLANNAIKNTKQ-GSITLGYTCLPDKHLKFY 445

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           +KD G GIA+ ++ ++ T F +         +G+GLGL I Q ++   GG   + S+L  
Sbjct: 446 VKDTGIGIAKDKLESLFTRFVKV----NDYVEGIGLGLAICQGLVTKMGGSMHVESELGI 501

Query: 465 GVEVIAILP 473
           G     +LP
Sbjct: 502 GSTFSFVLP 510


>gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 1054

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 24/296 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 296 LRVTNEELEEQSRSLQQSQSDLEQQQAELEQTNVQLEERTQALEAQKQALLVAQNQLVRN 355

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSPEQVK-YAQAILSSN 414

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  I+   +++      +  A++K + +    D   
Sbjct: 415 NDLLALINDILDLSKIEAGHVELADETIATSSVLQRLRETFEPLARQKGLALQITADADA 474

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            + +  D + ++Q++ NLL+NA+KFT   G V +++   +       ++D G GIA  + 
Sbjct: 475 PTQLVMDSQRLQQILKNLLANAIKFT-EHGSVSLSLQAQAPGRVLFKVQDTGIGIAREQT 533

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP
Sbjct: 534 EIIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSIRVDSEPGRGSCFTLELP 589


>gi|298491856|ref|YP_003722033.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298233774|gb|ADI64910.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 684

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 15/341 (4%)

Query: 146 LIALSISALSNFMLPY-----AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
            I L+++++ + +L        + +    ++ A    ++     L   L  +   AL+  
Sbjct: 274 WIILAVASVKDALLGLNEIKVILIVLTAGLIGASLLVSLYLAPYLASPLEELRDYALNIH 333

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMS 257
           ++        N KI         L   +E  K+ ++E     K A+  N  KS+FLA+ S
Sbjct: 334 SHHAAQPIPRNFKIREFNQLAQALDQMVERLKAWAEELEIAWKEAKSANFVKSQFLATTS 393

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELR PLN I+    ++        + E   E++     +  HLL +IN++LD+S+IEAG
Sbjct: 394 HELRNPLNIIINCVRLVRDGLCD--DREEELEFLQRADETAIHLLGIINDLLDISKIEAG 451

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +  + + L  ++ + I +  +  Q+K +++   I   L  V ADE  ++QV++N++ 
Sbjct: 452 KISVITTPLELRKLLLDVINLQSVNVQQKGLQLKCAIGNELIPVRADELKLKQVLINIIG 511

Query: 378 NAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           N+ KFT   G + ++             IS+KD G GI  G+   +   F          
Sbjct: 512 NSTKFTDK-GSIVISTDIHHNNSSSHVIISVKDTGIGIDPGQQDKLFRPFVMVDGTTTRK 570

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
            +G GLGL I+++++   GG+  + S  L  G  V  ILP 
Sbjct: 571 FEGTGLGLAISRNLIELMGGKITLESLGLHHGTTVKIILPL 611


>gi|254507980|ref|ZP_05120108.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219549088|gb|EED26085.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 774

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 148/325 (45%), Gaps = 18/325 (5%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----------N 211
           A+       ++A+++  ++ + +    L   L  +L+      + L +S           
Sbjct: 144 AMLSEAKQAIIAIASIEVVLVALFSFVLGTYLTRSLTRLATAAHTLGQSGPGFQLNDQRP 203

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++       D + A+LE      +  R  AE+ + +KSRFLASMSHE+RTP+N +LG  
Sbjct: 204 DELGDVARAFDSMSAKLEKDYIDLNTARADAEQASSSKSRFLASMSHEIRTPMNGVLGIL 263

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            ++E   +        ++ +     SG  LL++IN+ILD +R+E+    L      L   
Sbjct: 264 NILEETNLTK----EQQKLVNTATESGHFLLSVINDILDFTRMESNTLILENRPFDLHRC 319

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389
           +          A+ + + +   I+P++   V  D+  ++Q++LNL+ NAVKFT  G  R+
Sbjct: 320 ITSVTDSFYPTARAQGLVLHCYIEPAVPVMVLGDKNRVKQILLNLIGNAVKFTHEGSIRI 379

Query: 390 HVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           HV+   +      I   I D G GI++  I  +   F     +   +++G GLGL I + 
Sbjct: 380 HVSSIASESSHATIKCKISDTGIGISKNAIDYLFDEFTMVDQSYSRSKEGSGLGLAICKR 439

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           +     G   ++S+   G      +
Sbjct: 440 LCNLMDGDVNVQSEPDVGSTFAFTI 464


>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1177

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 731


>gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1305

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E   ++     +KSRFLA MSHE+RTP++ IL   E++E         
Sbjct: 650 ITQAKEQQVALMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELME----PHAQK 705

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++   ++ +SG +LLN++N++LD S+IEAG+  ++ S   L D++   +    + A 
Sbjct: 706 PELRQIHHNLSQSGLNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQPHSIHAN 765

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
           +K +     +DP+++   + D+  + QV+ NLL+NA+KFT   G +H+ V         +
Sbjct: 766 QKEVSFTLWLDPAVAHYLSFDDFRLTQVLNNLLNNAIKFT-TMGNIHLAVDVVKETNTEQ 824

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +I D G GI   ++  +   F Q   +      G GLGL I   ++    G     
Sbjct: 825 TLAFTIHDTGIGIKPEDLSQLFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMDGDIHAT 884

Query: 460 SKLREGVEVIAILP 473
           S++ +G     I+P
Sbjct: 885 SEVGKGTSFTVIVP 898


>gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1025

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+NA++G +E++   ++     E  ++Y G I +S   LL +IN++
Sbjct: 378 KSAFLANMSHEIRTPMNAVIGMTELLSATSL----TEEQQDYTGVIAQSADGLLTVINDV 433

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+ EL   A    +++ + + +L  RA  K +E+    D    + V+ D   
Sbjct: 434 LDFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLELVAAADGVPPAAVFGDPGR 493

Query: 368 MRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSF 424
           +RQ+++NL+ NAVKFT  G  V  ++            I++ D G GI   +IP +  SF
Sbjct: 494 LRQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRSF 553

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +      G GLGL I++ +    GG   + S+   G      L
Sbjct: 554 SQVDESATRRHGGTGLGLVISRRLAELMGGTVEVASEPGRGSVFTVTL 601


>gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 400

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 146 LCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 205

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDL+ +EA   + +   I LIDI
Sbjct: 206 KLI----TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDI 261

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 262 CLQLEQQFWHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPK-GEIHF 319

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    I T+   FG+         QG GLGL + + ++  
Sbjct: 320 GY-REKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD----FVQGTGLGLTLCRMLVEK 374

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 375 MGGRIWLRSQEGQGSRFYFTLPLVR 399


>gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 744

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 137/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 499 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 555

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 556 VEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIA 615

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
             ++E  +++D +   +  D + + QV+ N L+NA KFT   G + +   +        I
Sbjct: 616 -PHLEFLKEVDDTPLEINVDRERLIQVLTNFLNNACKFTET-GYIKLGYSYLPDEGNVQI 673

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D+G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 674 YVEDSGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGKIELKSEVG 729

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 730 KGSRFTVILPCRVV 743


>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|94264858|ref|ZP_01288633.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454679|gb|EAT04944.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 701

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE  N AKS FLA+MSHE+RTP+N +LG + ++    +    N   +   G I  SG+
Sbjct: 204 DQAEAANAAKSEFLANMSHEIRTPMNGVLGMTTLLMDTGL----NREQRHLAGIIQASGE 259

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +IN+ILD S+IEAG+ +L      L +++      + + A+ K + +  ++DP+  
Sbjct: 260 DLLRVINDILDFSKIEAGQLDLEVIDFDLQELLDNFAAAMAIPARAKKLALIGELDPATP 319

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAE 414
             +  D   +RQ++ NL+ NA+KFT   G V +    T    + ++    ++D G GI  
Sbjct: 320 RFLRGDPGRIRQILTNLVGNAIKFTEQ-GEVALHFDATEHSPERLTLRCRVRDTGIGIPA 378

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   +  SF Q   +      G GLGL IA+ +     G   + S   +G E    
Sbjct: 379 DKRDRLFKSFSQADSSTTRQYGGTGLGLAIAKQLAEKMAGAISVTSVSGQGSEFTVT 435


>gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 979

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 132/285 (46%), Gaps = 15/285 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   + +      + +  +D+L   +        E   R  E +  KS FL ++SH+LRT
Sbjct: 695 IFRDITERKRGEEALKKSRDELEERVAERTRELTEANARLTELDNLKSAFLNTVSHDLRT 754

Query: 263 PLNAILGFSEVIELETMGPLNN------------ETYKEYIGDIHRSGQHLLNLINEILD 310
           PL +ILGFS++I+ +                       + +G I   G+ L  L+++ LD
Sbjct: 755 PLTSILGFSKIIQRDFTRRFLPLAEGDSVLRNKASKILDNLGVIVSEGERLTRLVSDFLD 814

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQ-LRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           LSRIE GRY   +    L  ++R  +  ++    Q+  ++I    D  L ++W D   + 
Sbjct: 815 LSRIEDGRYVWKDKTTDLGVLIRGAVSSMKGALLQKHGVQIRVDADSHLPALWVDPDRIA 874

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV+ NLLSNA+KFT+  G V +T    S     +S+ D G GI   E+P +   F Q   
Sbjct: 875 QVLTNLLSNAIKFTSE-GTVTLTA-RASTGSIRVSVADTGMGIPPDELPMIFDKFYQVGD 932

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               AE+G GLGL I + I+ ++ G   + S    G      LP 
Sbjct: 933 DTLVAEKGTGLGLAICKQIVEHYDGAIWVESTQGVGSVFFFELPL 977


>gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
 gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
          Length = 1054

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E     K+ F++++SHELRTPL ++ G   ++    +G +  E  +E +    R+
Sbjct: 561 ERKRLE---QMKTEFISTVSHELRTPLTSVSGAIGLVLGGRLGDI-PEKAQELLNTAQRN 616

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L +LIN++LD  +I AG+         +I I+ + +   +    E+N+++      +
Sbjct: 617 SERLAHLINDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLT 676

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            +SV  D + ++QV+ NLLSNA+KF+  GG V +    T      +S+ D GPGI E   
Sbjct: 677 QTSVKVDVQRLKQVLANLLSNAIKFSPDGGTVSIEATSTDTD-ITVSVVDQGPGIPEDFQ 735

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V   F Q   +    + G GLGL I + ++   GG     +   +G      LP  R 
Sbjct: 736 HKVFQKFAQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLPAVRS 795

Query: 478 LNFIPEDNH 486
              IP   H
Sbjct: 796 AQAIPIPVH 804


>gi|15892234|ref|NP_359948.1| histidine kinase sensor protein [Rickettsia conorii str. Malish 7]
 gi|15619371|gb|AAL02849.1| histidine kinase sensor protein [Rickettsia conorii str. Malish 7]
          Length = 497

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              +I E             + E+ + + ++F  ++SHELRTPLNAI+GFSE++  E   
Sbjct: 241 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER-- 298

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  K YI DI+ +G+HLL++IN+ILDLS+  A + ++    + L  ++R  +I+++
Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399
            RA +  + +  ++      + AD K ++QV LNLLSNAVKFT  GG V + +      +
Sbjct: 357 TRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             YI + D G GI E +IP  L++FGQ    +    +G GLGLP+ + ++    G+F ++
Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476

Query: 460 SKLREGVEVIAIL 472
           SK+ EG  +    
Sbjct: 477 SKINEGTTITITF 489


>gi|172059032|ref|YP_001815492.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991553|gb|ACB62475.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 616

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL  +  + E +        + E    ++       + ++
Sbjct: 380 EQVEQDRREFVANVSHELRTPLTTMRSYLEALAEGAY--QDEELAPRFLETTQNETERMI 437

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LS++++  Y++++     I  + + +    +  + + I   +KI      + 
Sbjct: 438 RLVTDLLQLSKMDSKEYKMNKVRFDYIQFLNDILDRHDMT-KPERIRFRRKIMKRKVYIR 496

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + QV  N+L+NA+K++  GG + V     + +   ISIKD G GI +  +  +  
Sbjct: 497 GDQDKLIQVADNILTNAIKYSPEGGTITVRTMLRA-KRIVISIKDEGVGIPKANLQKIFE 555

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ +++ HGG     S+   G  +   LP   +  
Sbjct: 556 RFYRVDKARARKIGGTGLGLSIAKDVVSAHGGDIWAESEWGRGTTIYFTLPYEVIEE 612


>gi|319787299|ref|YP_004146774.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465811|gb|ADV27543.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 736

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/420 (22%), Positives = 161/420 (38%), Gaps = 18/420 (4%)

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
             V    + L    +        +   +   ++  +  GL  +L                
Sbjct: 23  ALVRIVLILLILSYVLLPSSRAGLDPVQYRDVLAIVLGGLALSLAIFGWLLARPGRSDVR 82

Query: 140 YKSATLL-IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
                L    L  + +     P A    +  V+       +   +   ++   M   +  
Sbjct: 83  RAVGMLADYGLMAAGMIRMGEPLA--WVYIVVMWVTIGNGLRYGNRYLLAAVAMAVASFG 140

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              + T          L   A    +   L           + A+  + AKSRFLA+MSH
Sbjct: 141 TVVWATEFWHSVRALGLGLLAGLVAVPMYLSSLLRQLTRATEEAQRASEAKSRFLANMSH 200

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E RTPLN + G +E++    +        +E +  I  S + L+ L+ ++LD+S IEAG+
Sbjct: 201 EFRTPLNGLAGMTELLSTTPLDS----EQRECLRTIQASTRSLMGLVEDVLDISAIEAGK 256

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
            +LS    S  + V    ++LQ +A++K +E    ++ ++ S V  D   +RQV+LNL+ 
Sbjct: 257 VKLSPENFSPREAVDSIGLILQPQARQKQLEYLVVVEDAVPSLVHGDAVHLRQVLLNLVG 316

Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT  G  RV V++   S         ++ D G GI E     +  +F Q    +  
Sbjct: 317 NAVKFTDAGRVRVDVSLAGASDGQVVRLRFAVSDTGIGIPESMRERLFEAFEQADAGLAR 376

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP------NTRVLNFIPEDNHE 487
              G GLG  IA+ ++   GG+    +    G      +P        RV    P    E
Sbjct: 377 RYGGTGLGTTIARGLVEAMGGRIGYENLEPRGSRFWFEIPFQAAAEPRRVAVLEPGQEAE 436


>gi|296331265|ref|ZP_06873737.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676252|ref|YP_003867924.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151380|gb|EFG92257.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414496|gb|ADM39615.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1026

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 183/454 (40%), Gaps = 38/454 (8%)

Query: 39  TLHVESLFRVSPILPLFV-------LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
            L    +  +   + L +       LL  +I      +        +++AV+       +
Sbjct: 233 LLFFSVMCLLFSFIILMIGKERIIFLLNPSISFSMLNSMRAISTVFVSIAVFLYLYFAYR 292

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           K+++           + ++L+  ++ GL      L         Y+     A        
Sbjct: 293 KIVS-----------KRFILIATVSSGLVLITDFLTVGFIGHASYILHSVLAV------- 334

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-- 209
                  L Y  ++     +  +     +++  + +S   +L T  ++     +      
Sbjct: 335 -----STLVYITYIFTIAAIRKMEGSLYLTIASISMSAFVILTTISAYSGKSAFSFNSIY 389

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S   +++  A    +  +   A   ++   ++    +  K  F+A  SHE +TPLN+I+ 
Sbjct: 390 SLPTVIALLAIVLLMAQQFAGAFRENEVLTRKLLNIDRLKDEFIAKTSHEFKTPLNSIIN 449

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             + +          E  K+ +  + R G  L NL+N+ILDL +I+ G  ++    + + 
Sbjct: 450 ICQTLLAGRR-KRTIEEEKDNMQLVIRMGYRLSNLVNDILDLEKIKQGMLQIHPVPVDIY 508

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++   +    L ++ KN+ I   I   L  V ADE   RQ++ NL+ NA+K+TA  G++
Sbjct: 509 TLISSEMNFYHLLSRHKNLNIMNHIPSGLPLVLADENRFRQIVTNLVDNAIKYTAE-GQI 567

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++    +     +++ D G GI+E +  T+  SF Q      + + G GLGL I + ++
Sbjct: 568 TLSASKLNDNMIKVTVTDTGSGISEADRQTIFESFQQAE---TNKDDGAGLGLSIVKQLV 624

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
               G+  + S+  +G      LP  +    +PE
Sbjct: 625 ELQNGEIWVESEEGKGSAFHFTLPIAQ-NEAVPE 657



 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 91/283 (32%), Gaps = 65/283 (22%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE 272
               A   +LI     A   +     R E     +  K  FL ++       LN I+  + 
Sbjct: 796  EFMARMKNLIMMKHTANQAT-----RMEMAFLQSQIKPHFLYNV-------LNTIISLTH 843

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +           E +  Y+         +     +  + S I + ++ELS         +
Sbjct: 844  L--DIEKAREVTEEFTNYL--------RMSF---DFQNTSAISSFKHELS---------I 881

Query: 333  RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT----AIGGR 388
                + ++       ++I   I+  +  +      M Q    L+ NAV         GG 
Sbjct: 882  ISSYLSIEKTRFGDRLDILFDIEEDIDFIL--PPLMIQP---LVENAVLHGVSKKRGGGW 936

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + +T    S  G YI ++DNG GIA  +   +L+                 +GL   ++I
Sbjct: 937  IKLTAKKQSENGYYIKVEDNGAGIAPEKRKDLLS----ADFDRS-------VGL---KNI 982

Query: 449  MANH----GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                    G +  I S    G  V  ++    +    P    E
Sbjct: 983  NQRLKHFCGSELKISSTPDAGTSVSMLIHLAEITES-PTALSE 1024


>gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 660

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 251 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 310

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N      +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 311 EEGQPNYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 367

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V++     
Sbjct: 368 QELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIER-DD 426

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 427 GHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 486

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 487 TSGGRGKGATFTVRLP 502


>gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A]
 gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1951

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 19/249 (7%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +KSRFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1256 KLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQTSANS 1311

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L+        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1312 LIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPA 1371

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------WTSGRGQYISIKDNGP 410
             V  D+  +RQV+LN++ NA+KFT   G V              + +      SI D G 
Sbjct: 1372 WVKGDKVRIRQVLLNVIGNAIKFTNE-GEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGR 1430

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G  E E   +   F Q   +      G GLGL I++ ++  HGG+   ++ L +G     
Sbjct: 1431 GFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGKAVLGKGSTFTF 1490

Query: 471  I----LPNT 475
                 LP  
Sbjct: 1491 TARFGLPTE 1499


>gi|217971382|ref|YP_002356133.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217496517|gb|ACK44710.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1191

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +  ++ A+  + AKS FLA+MSHE+RTP+NAI+G  E+    T     +      I 
Sbjct: 689 EELEYAKEIADSASQAKSTFLATMSHEIRTPMNAIIGMLELALKRTKSQHFD---INSIK 745

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             + S   LL LI +ILD++RIEAG+  LS    +L +I    + +    A+EK I +  
Sbjct: 746 VAYDSANGLLELIGDILDIARIEAGQLYLSPVRSNLKNITTSVVRVFDGLAREKGISLQL 805

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDN 408
              P L+  +  D   ++Q++ NL+ NA+KFT  G    ++       + R    ++ D 
Sbjct: 806 DFTPELTKDILVDPIRIKQILSNLIGNAIKFTHNGSVKVKIQSKTLVHAKRTLLFTVTDT 865

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +   + T F Q   A  +   G GLGL I  S+    GG   + S   +G ++
Sbjct: 866 GIGISEEDQQKLFTPFSQAHGANNT-YGGTGLGLMICHSLCEMMGGTLTLESSPNQGTKI 924

Query: 469 --IAILP 473
             I  LP
Sbjct: 925 SMILTLP 931


>gi|167648426|ref|YP_001686089.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167350856|gb|ABZ73591.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 627

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 160/375 (42%), Gaps = 16/375 (4%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAI 179
            + TL+ P       +          +L+     +  L   +F     + + L+      
Sbjct: 114 AVDTLIRPIKLGSRQVGTLALMAKRPSLTDIIARDLALTGTLFFGSAGLAILLANGLARR 173

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-----CQAEKDDLIAELEVAKSL 234
           M+  +  +S A     A   F  +         + L+       +  +    +L  A + 
Sbjct: 174 MTKPMERLSRAMREVAADGRFKPVEQAADDDVFQSLTDSFNHLVSRLEINDHDLRGAMAE 233

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             + R  A   N+ KS FLA+MSHE+RTPLN +L  +EV+ +  +    +   +E +  I
Sbjct: 234 LVKARDDANAANVLKSHFLANMSHEIRTPLNGVLAMTEVMAMGEL----SAAQRERLSVI 289

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQK 353
             SG  LL+++N++LDLS+IEAGR +L E    L  +          +A++KN+E     
Sbjct: 290 RESGDLLLSVLNDVLDLSKIEAGRLDLVERDFDLASLALSIRESYATQARQKNLEFGVFV 349

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYISIKDNGPGI 412
              +L     D   +RQ++ NL+SNA+KFT   G V V       G G  I + D G GI
Sbjct: 350 APEALGPWRGDADRLRQILGNLVSNALKFTLE-GSVSVRFASADDGSGLRIDVVDTGIGI 408

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A   +P +   F Q   +      G GLGL I   + A  GG   ++S+  +G     ++
Sbjct: 409 AAESLPRLFDKFVQADSSTTRRFGGSGLGLSICNELAALMGGGVHVQSREGQGSTFTVVV 468

Query: 473 --PNTRVLNFIPEDN 485
             P       +P + 
Sbjct: 469 AMPRGEATVHVPVEA 483


>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
           RcsB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 948

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +  + 
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVER 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|312878350|ref|ZP_07738262.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794868|gb|EFR11285.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 458

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 15/318 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-L 215
           +     +F+            ++++      S++  +   +   T     +  +++ + +
Sbjct: 154 YSFLKLLFIVLLVADAIGMITSVITG----FSISQKILKPIKEITNTAKRITATDLNVKI 209

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           +     D+L    +    + +  +   E++N    +F++  SHELRTPL+ I G+  +I 
Sbjct: 210 NVGEVDDELSNLAKTFNEMIERLKISFEKQN----QFVSDASHELRTPLSVINGYINLI- 264

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +  G  + E  +E I  I    +++  L+  +L L+R ++G  +L +  ++L  +V E 
Sbjct: 265 -DRWGKNDKEVLQESIVAIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEI 323

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +   +L A  +N     K       ++AD + M+Q++  ++ N++KFT  GG ++++V  
Sbjct: 324 VKEGKLVAPNRNWSYNHKGRID---IFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEK 380

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +   I +KDNG GI   EI  +   F +          G GLGL I + I+  H G+
Sbjct: 381 HLDK-VKIVVKDNGIGIPREEIGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGE 439

Query: 456 FLIRSKLREGVEVIAILP 473
            L+ S+L +G EV  +LP
Sbjct: 440 ILVESELGKGTEVSVLLP 457


>gi|332528619|ref|ZP_08404601.1| periplasmic sensor hybrid histidine kinase [Hylemonella gracilis
           ATCC 19624]
 gi|332041935|gb|EGI78279.1| periplasmic sensor hybrid histidine kinase [Hylemonella gracilis
           ATCC 19624]
          Length = 1206

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/397 (27%), Positives = 173/397 (43%), Gaps = 19/397 (4%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           + ++++   +          +LL+      L   +  L               SA  L A
Sbjct: 605 VLQRLLPRTLWPYLDRGLAHFLLLMLFTAPLLAGVFALFYQQELQGLMHRGLGSAVELEA 664

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            + SAL +  L   V L      VA           +    +      L     +     
Sbjct: 665 -AESALRSAFLKAYVALLLVAGTVAWWVVLAHKSRQVAQEESNRQTALLRREIDLHQQTD 723

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +               E A+ +++  R++AE+ N AKSR+++++SHELRTPLN+IL
Sbjct: 724 AALQEARRV----------AEEAQGIAEHARRQAEQANQAKSRYISAISHELRTPLNSIL 773

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+++++      P      K  +  I R G+HLL+LI   LDL+RIE+G+  L    ++ 
Sbjct: 774 GYAQLMGE---DPQVPAHRKHAVQVIRRGGEHLLSLIEGTLDLARIESGKLTLDVKPMAF 830

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+V E   M +L+A  K +        +L   V ADEK +RQ+++NLL NA+KFTA  G
Sbjct: 831 ADVVHELAAMFELQAAAKGLAFRFAPLSTLPERVRADEKRVRQILINLLGNAIKFTAQ-G 889

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V   V   +    YI I+D GPG+A  E+  +   F + + A      G GLGL IA+ 
Sbjct: 890 EVTFQV-RHAREMAYIDIRDTGPGMALDEMERLFEPFARTASA--QGTPGAGLGLTIAKM 946

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           +    GG+  ++S    G      L        +P  
Sbjct: 947 LTDLMGGELTVQSTPGLGSVFQVKLFLPEAHAALPSA 983


>gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
 gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
          Length = 975

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 5/258 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +V ++   + R+ AE  +  KS F+ASMSHELRTPLN+I+GF  V+     G LN 
Sbjct: 710 ITQKKVLQASLIKARESAESADRIKSMFVASMSHELRTPLNSIIGFLGVVLQGMSGDLNT 769

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +G  + S +HLL+LI++++D+S+IEAG  E+   + +L  +  E + ++   A 
Sbjct: 770 -KQKDQLGRAYHSAKHLLSLISDVIDISKIEAGFLEIHTESFALKPMFNEVVNVIHHIAD 828

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K++ +       +  +  D K + Q ILN++SNAVK+T   G V V     +     I+
Sbjct: 829 GKHLNLQIDCSEDII-LETDRKRLYQAILNVVSNAVKYTEA-GSVTVEAKIINE-ELIIT 885

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLR 463
            +D G GI+   +  +   F +    +K    G GLGL + + I+    GG   + S++ 
Sbjct: 886 TQDTGIGISPSGLEQLFKPFERAESHLKIKTLGTGLGLYLTRKILTQLLGGSIEVESQVG 945

Query: 464 EGVEVIAILPNTRVLNFI 481
            G      +P       +
Sbjct: 946 VGSTFTIRVPVKISEQTL 963


>gi|237747922|ref|ZP_04578402.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379284|gb|EEO29375.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 728

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 13/261 (4%)

Query: 225 IAELEVAKSLSDETRKRA----EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           I + +  ++L  +  + A     + N AKSRFL+ MSH++RTPLN ILG +++       
Sbjct: 325 IHQQKKQEALERQALRDACDAANKANAAKSRFLSCMSHDIRTPLNVILGMNQMANRNI-- 382

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +NE  ++ +  I  S +HLL L+NEILD+SRIE+G   L+E A    ++V+  I M+ 
Sbjct: 383 -EDNERVRKCLESISVSSRHLLTLVNEILDMSRIESGNLILAEQAFDFEELVKNAIEMIG 441

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----- 394
               +K+       D  +   V  D   ++Q++ NLLSNAVK+T   G++ + +      
Sbjct: 442 PFIVQKHHRFTINTDNLVHKNVIGDAPHLQQILQNLLSNAVKYTPSNGKIDLNIRDKIGA 501

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T      I I DNG G+++     +   F +G+    +  QG GLGL I Q+++    G
Sbjct: 502 PTGYTTIEIRIADNGYGMSKDVQARIFDPFERGNDTRINKIQGTGLGLTITQNLVQLMNG 561

Query: 455 QFLIRSKLREGVEVIAILPNT 475
              + S+  +G      +P  
Sbjct: 562 DIQLESEPGKGTTFTITIPFK 582


>gi|254361059|ref|ZP_04977204.1| histidine kinase [Mannheimia haemolytica PHL213]
 gi|153092545|gb|EDN73600.1| histidine kinase [Mannheimia haemolytica PHL213]
          Length = 616

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 13/320 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDI----SLAGMLATALSFFTYITYHLFKSNV 212
             L     ++   +++  S   +    V+ +    S+A  L +A     + T  + K  +
Sbjct: 22  ASLLGFFMVALSAILIQSSLTYLFIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEI 81

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             L  +    DL    E    L      + E+ +  KS  +A++SHELRTPLN I+G S+
Sbjct: 82  SRLKLEKAVRDLEELREQDAYL----NAKLEKNSRDKSILMATISHELRTPLNGIIGLSQ 137

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  +       E  +EY+  I+ S   L ++  +I+DL +I++ R EL    +    ++
Sbjct: 138 ILLDDK----TTEKQQEYLKTINMSATALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLI 193

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +        A  K I    K  P L   ++ D   + Q++ NL+SNAVKFT   GR+ +
Sbjct: 194 HDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQILWNLISNAVKFTPASGRILL 253

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +          ++ D+G GI E +   +   F Q   + +   QG G+GL +++ I   
Sbjct: 254 EIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKL 313

Query: 452 HGGQFLIRSKLREGVEVIAI 471
            GG  ++ S+  +G      
Sbjct: 314 MGGDLVVASQENQGSTFTLT 333


>gi|52144661|ref|YP_082167.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978130|gb|AAU19680.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 462

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPSEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|268680301|ref|YP_003304732.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618332|gb|ACZ12697.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 551

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 223 DLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L    E  + + +E +   K+  + +  KS+FLA+MSHEL+TP+N I+G  E++  + +
Sbjct: 5   KLKRSNERLQKMMEELKIAIKKTADAHQIKSQFLANMSHELKTPMNTIIGMGELLVHKKL 64

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  +  +  I  S  HL+++IN+ILD S+IEA   EL   +  L  ++     + 
Sbjct: 65  ----PEKEQRCLHKIVESAHHLMDIINDILDFSKIEANAIELKTVSFDLEKLLLSLSELF 120

Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---- 394
           ++RAQ+K IE+   +D  +      D K ++QV+ NLLSNAVKFT   G + + V     
Sbjct: 121 RIRAQQKGIELLIDLDKATNHPYKGDPKRLKQVLFNLLSNAVKFTQK-GEILLKVSLIET 179

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  + +IKD G GI   +   +  +F Q  ++     +GVGLGL IAQ ++   GG
Sbjct: 180 QDENEIVHFAIKDTGIGIEPKQTKDLFNAFSQADMSTTRHYEGVGLGLSIAQGLVLMMGG 239

Query: 455 QFLIRSKLREGVEVIAILPNTR 476
           +   +S L EG      +P  +
Sbjct: 240 EIQYKSTLGEGSTFWFEIPLQK 261


>gi|212634796|ref|YP_002311321.1| sensor protein LuxQ [Shewanella piezotolerans WP3]
 gi|212556280|gb|ACJ28734.1| Sensor protein LuxQ [Shewanella piezotolerans WP3]
          Length = 582

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 138/300 (46%), Gaps = 10/300 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRF 252
            L   T +          I        D+I+  +  + L +   + + RAE    +   F
Sbjct: 162 VLGSLTLVIESPISWQKTIEKQLLLFCDMISAAQRRQELLENTIKEKLRAESSEQSTRDF 221

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +        ++ +  +H+SG+ L  +IN++LDLS
Sbjct: 222 VAMINHELRTPLNGLLGSAELMLDTKLSSY----QQQLLNTMHQSGELLRVIINDLLDLS 277

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           ++ AG  ++ E   S   + +    + + R +E  +     +  ++  ++  D   ++Q+
Sbjct: 278 KMSAGMLQIVEVDFSPAKLCQMIFDIFKQRIEEFGLIFSFNVQQNIPQTLLGDPDRIKQI 337

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT   G + V + W   +  +  ++D G GI E +I T+   F Q + + 
Sbjct: 338 LVNLIGNALKFTQE-GEIKVNITWEQEK-LHFEVQDTGCGIPEDKISTLFAPFTQVNNSS 395

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             + +G GLGL I + ++        + S L +G      LP   +     +       Y
Sbjct: 396 NRSFEGTGLGLAICKQLVDEMNDTISLASVLNKGSCFKVALPLNSLQKVALDIERPQADY 455


>gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 615

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 183/425 (43%), Gaps = 24/425 (5%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125
            +   +  +     L          + +  + + +      R  LL           +  
Sbjct: 164 LSHGALMAVGIGSALLYCCGLAYAVESLARTSVALLSAEEDRYRLLARN--------MSD 215

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++           I  +A  L+    S L    L   V +   P  +   + A     V 
Sbjct: 216 VISCHRRNGAVQFISPAAEALLGTPSSRLLGHGLFDRVHVVDRPAFLTALSDAGRGGEVR 275

Query: 186 DI---------------SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +               + A            +   +        +        + + + 
Sbjct: 276 SVEFRVRRELPRGERSRTAAADFLWLEMRCRPLEQTVGGHVAAPDTEVVAVMRDVTDRKQ 335

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +   ++ R  A   + ++SRFLA++SHELRTPLNAI+GFSE+I  E    ++ E  +EY
Sbjct: 336 QELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEMIVQEQALMISAERRREY 395

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I+ SGQHLL+++N ILD+S++++G +E+     +    +  C  +L L+A++  I++
Sbjct: 396 AQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALLNCCNLLALKARDSGIDL 455

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +    L  V  D +  +Q++LNL+SNA+KFT  GG V V+     G    + + D G 
Sbjct: 456 VTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAA-VEGAHLALRVVDTGV 514

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  ++  +   F Q     +   +G GLGL I ++++A HGG+  + S+L +G  V A
Sbjct: 515 GIAADDLERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGGELTVASQLDKGTTVTA 574

Query: 471 ILPNT 475
           +LP  
Sbjct: 575 MLPLA 579


>gi|167746502|ref|ZP_02418629.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
 gi|167653462|gb|EDR97591.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
          Length = 635

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              A+ F T +        + ++   AE           K+ ++E  K AE+ NLAKS F
Sbjct: 76  TVAAVLFITALIMGFSLVYIHLIRRNAELLA------AEKNRAEEAFKHAEKANLAKSEF 129

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L+ MSHE+RTP+N I+G + +I  + +   N+    + +  I  S +HLL LIN++LD+S
Sbjct: 130 LSRMSHEIRTPMNGIIGMT-LIAGQNL--QNSAKISDCLKKISLSSKHLLALINDVLDMS 186

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371
           +IE+G+ E+          +     +   +A  K +     +   +   +  D   + Q+
Sbjct: 187 KIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKKLNFDTILIGEVREELIGDSLRLNQI 246

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           I NLLSNA+KFT  GG V + +               ++D G G+A   +  +  +F Q 
Sbjct: 247 ITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFRFQVEDTGCGVAPENMEKIFNAFEQE 306

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +     G GLGL I++   +  GG  ++ S++ +G    A +P
Sbjct: 307 TSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEVGKGSVFTADIP 352


>gi|307307210|ref|ZP_07586947.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910265|gb|EFN40697.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 10/299 (3%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             AI      D     +       +      + +     ++     +  I E    +    
Sbjct: 828  AAIEEKDQYDPIFRVVRTDGTIRYVQAAAQIERDVTGQVTKVIGINLDITEQRQLEETLR 887

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            E +  A+  N AKS FLA+MSHE+RTP+NA+LG  ++++  +M        ++Y+     
Sbjct: 888  EAKHEADAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVSKTQT 943

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            + + LL L+N+ILD S+I+AG+  L     S+  ++R+  I+L      KN+E+   +DP
Sbjct: 944  AAKSLLGLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDP 1003

Query: 357  SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPG 411
            +L   + AD+  ++Q+++NL  NA+KFT   G+V V +             ISI D G G
Sbjct: 1004 ALPAWLLADQLRLQQILVNLAGNALKFT-RHGQVTVAMECLRHEVNTVTVQISISDTGIG 1062

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            I+E +I  + T F Q   +      G GLGL I++ ++   GGQ  + S++  G     
Sbjct: 1063 ISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121


>gi|261867539|ref|YP_003255461.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412871|gb|ACX82242.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 619

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 9/337 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    ++  L    I+   V    + G+++      FFT +   L  S
Sbjct: 28  SLLGVMVLAVLALCTQILLSLLVMGKILWADVARSIVFGLISAPFVIYFFTVLVEKLEHS 87

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +     E    + E   A+    E     E+ N  K+  + ++SHELRTPLN I+G 
Sbjct: 88  RQALSCSVEELRREVQERVSAEKKLSEALDNLEKINRDKTTLMTTISHELRTPLNGIIGL 147

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S ++  E      +E  + Y+  I+ S   L ++ ++I+DL +I+A R EL+  A  L  
Sbjct: 148 SRILLEE----NPSERQQNYLKTINSSALSLAHIFSDIIDLEKIDAKRIELNRKATDLYA 203

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +      L  +EK+++      P+L   +  D   + QV+ NL++NAVKFT   G V
Sbjct: 204 LLNDIANFALLMTEEKHLQFQLVCPPTLPNWLMLDGVRLNQVLWNLINNAVKFTQQ-GSV 262

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++V  T+     + + D G GI E ++  +   + Q   +  +   G G+GL ++++I 
Sbjct: 263 TLSVEQTAEEEFALRVTDTGIGIVEQDLQKIFELYYQA-GSDANKSLGSGIGLSVSKTIA 321

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              GG   + S++ +G   +      + +  + ED H
Sbjct: 322 QLMGGDLTVSSEVGKGSTFLFTFKARQAIKPVEEDEH 358


>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
 gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
          Length = 948

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMPLVVRKQLG 566

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +  ++  D   ++QVI NLLSNA+KFT   G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVCLV-GDYLTIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDTEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TIRIPL 690


>gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1177

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 731


>gi|33861897|ref|NP_893458.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33640265|emb|CAE19800.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 689

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 25/255 (9%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L+NE   E++G  +     L  
Sbjct: 412 ELNAAQNRFISNVSHELRTPLFNIKSYVETLYD-LKDQLSNEEQLEFLGIANSETDRLTR 470

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++ S+  
Sbjct: 471 LVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNATEKNVSLAHDIEENIPSILG 529

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------------GQ 401
           +   + QV  NLL N +KF+     + +                                
Sbjct: 530 NFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFPPNNNKDAPQCELVSPLPKV 589

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I DNG GI++ +   +   F +   A+ + EQG GLGL I + I+  HGGQ  + S+
Sbjct: 590 RIEIADNGSGISQPDQEKIFDRFYRVENAVHT-EQGTGLGLSIVRGIIEKHGGQIRMASE 648

Query: 462 LREGVEVIAILPNTR 476
           L  G      LP  +
Sbjct: 649 LGIGTTFWFDLPLEQ 663


>gi|213405247|ref|XP_002173395.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001442|gb|EEB07102.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 2303

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 13/259 (5%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               E +  A      K+ FLA+MSHELRTP +   G   ++    +    +E  ++ +  
Sbjct: 1741 AEKEAQDAAFRAMKLKANFLANMSHELRTPFSGFYGMLSLLSETKL----DEEQRDIVST 1796

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESA-ISLIDIVRECIIMLQLRAQEKNIEIFQ 352
              +S   LL++IN++L+ S +E+G+ ++       + + + +CI ++      K+++I  
Sbjct: 1797 ARQSCDSLLHIINDLLNFSELESGKMKIEPDKVFDVEESIADCIELVYPTTSRKHVQISY 1856

Query: 353  KIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISI 405
             I P++ S+   D   +RQVI NLL NA KFT   G + +                 + +
Sbjct: 1857 DIMPNVPSLLAGDCAKLRQVITNLLGNAAKFTMH-GHILLRCSILPEDDTKYSCKLKVEV 1915

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            +D G G+ E E+  +   F Q   +      G GLGL I + I     G   + S + EG
Sbjct: 1916 EDTGIGLTEEEMKLLFQPFTQVDGSTTRIYGGSGLGLSICRQICKIMNGDIGVESAVNEG 1975

Query: 466  VEVIAILPNTRVLNFIPED 484
                  +   +V     ++
Sbjct: 1976 STFWFYVELRKVTAESAQE 1994


>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 756

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 149/368 (40%), Gaps = 26/368 (7%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-----VALSTQAIMS 181
           +         +      +L++  ++  +  F+L   +      +           +  + 
Sbjct: 130 LLFLQRAGYTVVSGLLKSLVLTAALLFIFFFVLTRPMLNVIGALSRVKAETPEKVRLPVP 189

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
            +  +  +  M+         I   L +  +   + +     L  E+E       E  + 
Sbjct: 190 ENHREDEIGLMVGVINQHLETIDSSLAQLRMAESAMKNYSSQLEQEVEDRTREISEKNEA 249

Query: 242 AEEENLAKSR--------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  N A  R              FLASMSHE+RTPLN +LG   +     M     +  
Sbjct: 250 LQRGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLALEGNM----EQAQ 305

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +     +GQ LL L+N+ILD+S++EAG+  L     SL ++V EC  +   +A+ KN
Sbjct: 306 RNRLEIALNAGQSLLGLLNDILDISKVEAGKLSLENIPFSLRNLVEECATLHAQQARRKN 365

Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           I++   ID  L      D    RQ++ NLLSNA+KFT   G V +           I + 
Sbjct: 366 IDVVADIDCELPETFLGDPTRTRQILNNLLSNAIKFT-ESGCVRIRATRY-NGNVRIDVI 423

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+++  +  + + F Q          G GLGL + + ++    GQ L+ S+  EG 
Sbjct: 424 DTGIGMSKEGLHRIFSPFSQADSDTTRLYGGTGLGLTLCRQLVERMHGQILVDSEEHEGT 483

Query: 467 EVIAILPN 474
                LP 
Sbjct: 484 HFTVNLPL 491


>gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1177

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 731


>gi|83646319|ref|YP_434754.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634362|gb|ABC30329.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 778

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 6/245 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RKR E     K  F+A++SHELRTPL AI G   ++     G    +T  + +   HR+ 
Sbjct: 264 RKRME---RQKDEFIATVSHELRTPLTAIGGALGLVL-GKHGGELPKTVLKMLKVAHRNC 319

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  LIN+IL++ ++E+G  +       L  +++  +   +  A +  +E+     P  
Sbjct: 320 DRLTLLINDILEIEKLESGALKFELEDQDLATLIQRSLEDHKEFAGKYQVELRFSNSPPR 379

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  DE+   QV+ NL+SNAVK++  GG V + V   +     + +KD G GI E    
Sbjct: 380 PWVHVDERRFHQVMSNLISNAVKYSPRGGAVDIAVSDVA-NRVRVHVKDYGKGIPEDFHS 438

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            V   F Q   +    + G GLGL IA++I+ +HGG+    SK  EG E    LP  R  
Sbjct: 439 RVFERFSQADSSDTREQGGTGLGLSIAKAIVEHHGGEIGFFSKTNEGAEFYFDLPI-RSP 497

Query: 479 NFIPE 483
              P+
Sbjct: 498 EKRPK 502


>gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1177

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 731


>gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
 gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
          Length = 757

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 14/252 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E++  +      RK AE+  L K  FLA+MSHE+RTPLNAI+GFS ++  E    ++ 
Sbjct: 515 IQEIKDKEEELIRARKLAEQAEL-KQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISE 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE+   I  + + LL L+N++L+LSRIE+G         S            Q+   
Sbjct: 572 EEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIIL 631

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401
              +E  ++      ++  D   + QVI N L NA KFT+ G   H+ +G+      +  
Sbjct: 632 PP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEI 687

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I ++D G GI + E+  +   F +         QGVGLGL I++ I+    G   ++S+
Sbjct: 688 HIFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSE 743

Query: 462 LREGVEVIAILP 473
           + +G    A+LP
Sbjct: 744 VNKGSRFTAVLP 755


>gi|188590708|ref|YP_001921035.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500989|gb|ACD54125.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 664

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 132/258 (51%), Gaps = 7/258 (2%)

Query: 234 LSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIEL---ETMGPLNNETY 287
                 KR E        K++F A++SHE +TPLN IL  ++++E    +    L  ++ 
Sbjct: 384 ELALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDMLEKQSM 443

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+  + ++   LL L+N ++D+++I+ G Y+++    ++++++ E ++ +    + K 
Sbjct: 444 GKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAEYTKNKE 503

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIK 406
             I    D     +  D + + ++ILNL+SNA+K+T   G + V +          IS+K
Sbjct: 504 RNIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNEVIISVK 563

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GI +     +   F Q   ++    +G G+GL + +SI+  H G+  I S+  EG 
Sbjct: 564 DNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINSESDEGT 623

Query: 467 EVIAILPNTRVLNFIPED 484
           E+I  LP  ++     ++
Sbjct: 624 EIIFTLPIKKIDEEKLDE 641


>gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 399

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 145 LCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 204

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDL+ +EA   + +   I LIDI
Sbjct: 205 KLI----TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDI 260

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 261 CLQLEQQFCHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPK-GEIHF 318

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    I T+   FG+         QG GLGL + + ++  
Sbjct: 319 GY-REKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD----FVQGTGLGLTLCRMLVEK 373

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 374 MGGRIWLRSQEGQGSRFYFTLPLIR 398


>gi|291537853|emb|CBL10964.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 855

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 130/261 (49%), Gaps = 14/261 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +++ ++AE+ N+AK+ FL  MSH++RTP+N I G  ++         N +  +E +
Sbjct: 451 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICR---YYIGNPKKQEECL 507

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   L+ L+N++LD++++E+G+ +L E   S+ +I++E   ++ + A E+ I + 
Sbjct: 508 DKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITLT 567

Query: 352 QKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISI--K 406
            K  + +  ++      +RQ++ N+ SNAVK+    G+V +                   
Sbjct: 568 VKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVCT 627

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G++          F Q + + +++  G GLGL I + ++    G     S+  +G 
Sbjct: 628 DNGIGMSPEFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKGT 687

Query: 467 EVIAILPNTRVLNFIPEDNHE 487
               ++P       +P+D+ E
Sbjct: 688 RFTLVIPF------LPDDSIE 702


>gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 884

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 152/371 (40%), Gaps = 24/371 (6%)

Query: 124 LTLVEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
           + +      + +         +    ++ +++ +  ++ L            +A+   ++
Sbjct: 228 IPIYRHEMASHQTRAYLPLTIVDNAYVVIVTLDSTRSYQLLAEASERSAFYTLAIVLVSM 287

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-------VAK 232
           +   +L   L   L +           L  S +       E   ++  LE          
Sbjct: 288 LLGFLLLRRLLNPLRSLRRKAEASAMELTGSGISA-DSGNEVQAVVEVLETLTDRLVRRN 346

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           S   E +  AE  N AKS+FL++MSHE+RTPLN ILG +EV+E   +          Y+ 
Sbjct: 347 SDLAEAKDAAEAANTAKSQFLSNMSHEIRTPLNGILGMAEVLERTPLNN----EQARYLR 402

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  +GQ L  L+ +ILDL++IEAG+  L +    L  ++ +     +  A      +  
Sbjct: 403 AISSAGQALHGLLGDILDLAKIEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTA 462

Query: 353 KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISI 405
                +   +  D   +RQ++ NLL+NAVKFT  GG + + V   + R          S+
Sbjct: 463 DFVGVARLCLRGDPTRLRQLLSNLLTNAVKFTERGG-ITLNVVRLASRPEDARVWLRFSV 521

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA      +   F Q   +      G GLGL I + ++   GG   + S + +G
Sbjct: 522 RDTGIGIAPEAAARLFQPFVQADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQG 581

Query: 466 VEVIAILPNTR 476
               A LP   
Sbjct: 582 STFTAELPFAE 592


>gi|229015977|ref|ZP_04172938.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
 gi|229022194|ref|ZP_04178744.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228739125|gb|EEL89571.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228745337|gb|EEL95378.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
          Length = 463

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+++ +     PSL  V  DE+ 
Sbjct: 291 LFSLAQMEKHNFFIHVQEVHLHPFLTRITEKVNAMYKERHVTVSFTCPPSLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEDKHISIKIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|240146650|ref|ZP_04745251.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257201194|gb|EEU99478.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 700

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 130/261 (49%), Gaps = 14/261 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +++ ++AE+ N+AK+ FL  MSH++RTP+N I G  ++         N +  +E +
Sbjct: 296 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICR---YYIGNPKKQEECL 352

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   L+ L+N++LD++++E+G+ +L E   S+ +I++E   ++ + A E+ I + 
Sbjct: 353 DKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITLT 412

Query: 352 QKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISI--K 406
            K  + +  ++      +RQ++ N+ SNAVK+    G+V +                   
Sbjct: 413 VKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVCT 472

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G++          F Q + + +++  G GLGL I + ++    G     S+  +G 
Sbjct: 473 DNGIGMSPEFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKGT 532

Query: 467 EVIAILPNTRVLNFIPEDNHE 487
               ++P       +P+D+ E
Sbjct: 533 RFTLVIPF------LPDDSIE 547


>gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 867

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 11/273 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +    +      S   + + + +           +R+ A      KS F+++ +HELRTP
Sbjct: 602 SRQEMRVIQARFSAIYDNESIPSGAITLLQDVTRSREMA----RLKSEFISTAAHELRTP 657

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY-ELS 322
           L A+LGFS+++       ++ E  +EY+  I    + L  +++++LDLSRIE+GR   L 
Sbjct: 658 LTAMLGFSDLLLESP--DISAEERREYLQIISSKSESLAAIVDDLLDLSRIESGRLITLD 715

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           +  I L   +   I   +      + +    ++   S ++ DE  M QVI NLLSNAVK+
Sbjct: 716 QKQIPLQQTLVGLIEQYRD--SCPDHQFITHLNDIDSMLYIDENKMAQVIENLLSNAVKY 773

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           +  GG + +           ++I D G G+   ++  +   F +      +A  G+GLG+
Sbjct: 774 SPEGGNISIETRREPDGFL-LTIADQGIGMTPAQVERIFNKFYRVDG-TNTAVGGLGLGM 831

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            IA+ I+  H G+  + S + +G      LP +
Sbjct: 832 SIAKHIVEAHQGEIWVESTINQGTTSYVRLPLS 864


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 230 VAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNE 285
            +    +E ++RAE     + AK+ F +++SHE RTPL  +LG  E  ++    G     
Sbjct: 332 QSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDT--GEPLPP 389

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++    +HR+G  LL L+N +LD SRIEAGR +       L     +     +   ++
Sbjct: 390 RQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEK 449

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + +        + V+ D +   +V+LNLLSNA KFT +GG V V++   + R   +++
Sbjct: 450 AGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGG-VRVSLRAEADR-AVLTV 507

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI E E+P V   F +   A   + +G G+GL + Q ++  HGG   + S + +G
Sbjct: 508 ADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQG 567

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP    +  +P + 
Sbjct: 568 SRFTVTLPLG--MAHLPAEQ 585



 Score =  213 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 28/278 (10%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + E  +A+  S+   ++ +  +  K  FLA ++HELR P+ AI     ++E       + 
Sbjct: 890  VTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLER---SEGDT 946

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +     R   +L+ L++++LD+SRI  G+ EL +  + L  +V+  + + +   +
Sbjct: 947  AKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQNALAVTRPLIE 1006

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---Q 401
             +   +   + P    + AD   + QV++NLL+NA K+T  GGR+ V++      G    
Sbjct: 1007 ARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNGTRQA 1066

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA--------EQGVGLGLPIAQSIMANHG 453
             + +KD G GI    +  V   F Q + ++  +                   + ++  HG
Sbjct: 1067 VLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTL--------VKRLVEMHG 1118

Query: 454  GQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G     S+   +G E    LP       +P + HE+++
Sbjct: 1119 GHAEAFSQGPGQGSEFTVRLPLA-----MPPEAHEASE 1151


>gi|197103592|ref|YP_002128969.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196477012|gb|ACG76540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 586

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 182/441 (41%), Gaps = 23/441 (5%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101
             +  R  P+     L++     + TQ+P    W     A    +L L   +      + 
Sbjct: 11  ASTRARELPMRVGLALIIGAGTLYLTQSPWTFAWLAAVAATQLLDLRLTAPMRRDPDFVP 70

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
           +        L       L ++ +T +       E   +Y        L   AL     P 
Sbjct: 71  DRAQ-ERVYLASVTLNVLVYSAITPLCWLKGGLEG-HLYALLVPAAGLINVALQAQSAPK 128

Query: 162 AVFLSFFPVVVALSTQAIMSM----HVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            ++    P  + L +  ++S+          +A +   A  +  ++   + ++    ++ 
Sbjct: 129 MLWAGCTPHALYLVSLPVLSILVEQDADVAGMAFVAVGASLYLAHLFIAVLRNRQAAVAL 188

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                +  A    A+  S            AKS FLA+MSHE+RTPLN +LG ++ +  +
Sbjct: 189 DEALGEAQAARARAQEAS-----------AAKSEFLATMSHEIRTPLNGVLGMAQAMAHD 237

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +        +E +  I +SG+ LL L+N++LD+S+IEA + EL  + + L D+  +   
Sbjct: 238 PL----PRRQRERLEVIRQSGEVLLVLLNDLLDISKIEAAKLELDLAPLDLHDLAAQAQE 293

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                A  K++E+  +  P L+  W AD   +RQ++ NLL+NAVKFT   G V   +   
Sbjct: 294 AFAPLAASKDLELSVRAAPELAGAWRADATRVRQILYNLLANAVKFTER-GAVAADLFLD 352

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +     + ++D GPG+A   +  +   F Q   +      G GLGL I++ +    GG  
Sbjct: 353 AAGQVVLRVRDTGPGVAPERLDALFERFVQAEASTTRRYGGSGLGLAISRDLARLMGGDI 412

Query: 457 LIRSKLREGVEVIAILPNTRV 477
             +S    G     ILP  R 
Sbjct: 413 AAQSTPGAGSTFTVILPLDRA 433


>gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114]
 gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114]
          Length = 864

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 8/260 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + E  DLI          +  + +AE    AKS FLA+MSHE+RTPLN I+G S+++  
Sbjct: 321 YKDEIADLIYSFNQETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTE 380

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             + P+      EY+  I  S Q LL LIN+ILDLS+IE+G   +     ++ ++  + +
Sbjct: 381 TDLTPV----QSEYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTL 436

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVG 394
            ++  +A EK + +   I   L   V  DE  +RQV++NL+SNAVKFT  G  +  +   
Sbjct: 437 TVILSKATEKGLALQVDIANDLPELVMLDEHRLRQVLMNLMSNAVKFTQDGAVILSINYQ 496

Query: 395 WTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                    + S+KD G GI++ +   +   F Q   +I     G GLGL I + ++   
Sbjct: 497 QKENGRGLLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEML 556

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG+  + S+   G +   IL
Sbjct: 557 GGELKVDSEKGFGSKFHFIL 576


>gi|317154447|ref|YP_004122495.1| CHASE4 domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944698|gb|ADU63749.1| CHASE4 domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 623

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 152/351 (43%), Gaps = 28/351 (7%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA-----------LSFFTYI 203
            NFM+  AV ++F  +V  L    ++S      +    L  +                 I
Sbjct: 270 LNFMILAAVLVAFSLLVFYLLQSKVLSRMERLNAEVKTLNGSGEVTVQGRDEIAELSRNI 329

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L + +    + Q   DDL  ++    +  ++  +  +  + AKS FL+S SHELRTP
Sbjct: 330 NAMLHQIDESRTALQTAHDDLERKVRERTAELEKANRELQWLDQAKSHFLSSTSHELRTP 389

Query: 264 LNAILGFSEVIELE---------TMGPLNNETYKEYIG---DIHRSGQHLLNLINEILDL 311
           L +ILGF +++E                  E   +++     +    + L  LIN++LD 
Sbjct: 390 LTSILGFVKLMERTFKETFEPSLAASAEPPEKIAKHLQNYKIVRAEAERLSRLINDLLDF 449

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           S+I AG+ +  E  ++  ++VR+    +  +      +E+   + P L ++      + Q
Sbjct: 450 SKISAGKVDWHEDEVTPAELVRDAGEAIAGQLGDNPQVELTTDVAPDLPTLRVSRDRIHQ 509

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V++NLL NA + T   G + +     SG     S+ D G G+   +   +   F Q +  
Sbjct: 510 VLINLLGNAARHT-ESGYIRIAARR-SGDAIEFSVSDTGVGVLLEDRERIFEVFYQSTGE 567

Query: 431 IKS--AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +      G GLGL I + I+ ++GG+  + S+  +G      LP +R ++
Sbjct: 568 YRDAGRSAGTGLGLAICKEIVEHYGGRIRVESEPGKGSVFSFSLPISRPIS 618


>gi|332142260|ref|YP_004427998.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552282|gb|AEA99000.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 1121

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 174/375 (46%), Gaps = 17/375 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            + L++  T           A   ++ SI  L    +P     +     + +    ++S 
Sbjct: 555 SIDLLKALTTPMSQFIALTFALSCVSASILYLVYLQVPSTSGANVLFADMLIKIFFLLS- 613

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241
                    ++   LS+   +  +  K  +K L  QA    D I   EV     ++ +  
Sbjct: 614 ---------IIVGILSWLFVLARNANKIALKELRSQASALADEIGAHEVTSIALEKAKNA 664

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR+LA +SHELRTPLN +LG+S+++  +      +E  ++ +G + R+G+HL
Sbjct: 665 AEAANEAKSRYLAGLSHELRTPLNVMLGYSQLLGKDV---SLSEKQRDTMGIMRRNGEHL 721

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
            NLI  +L++S+IEAGR  L     ++  I+++ I M +L+A  K +     I   L   
Sbjct: 722 ANLIEGLLEISKIEAGRLTLHRDEFNIRAILKQLIDMFELQASNKGLNFHTNISTKLPDV 781

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D++ +RQ+++NL+SNA+K+T   G V   V + +       + D G GI+E    T+
Sbjct: 782 VVGDKQRLRQILINLISNAIKYTEA-GHVKFDVQYRNE-VAIFVVVDTGSGISEAHKETI 839

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q       A  G GLGL I++S+    GG+   +S L +G      L   R+   
Sbjct: 840 FQPFEQIRNTHTQAIGGTGLGLTISRSLTELMGGELSFKSLLGKGSTFTLRLMLPRITQN 899

Query: 481 IPEDNHESTQYKCYA 495
                + S     Y+
Sbjct: 900 QTTPENHSQHVCAYS 914


>gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 915

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 418 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 473

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 474 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 533

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 534 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 591

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 592 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 651

Query: 469 IAILPN 474
              +P 
Sbjct: 652 TLRIPL 657


>gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1032

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/484 (22%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 12  VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV--ANIGTWFTQN 69
           V   +             +      +    V S         +   +   A +     + 
Sbjct: 302 VARALQHAR-----HDDGERAAAHRVGINFVVSDRVPRSDEVVMATISWRAVLSDVALRA 356

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
               +     L   A             ++        I L+  +               
Sbjct: 357 S---LTVAPALFAIALLWVAIVMFDRRALRPANRRA--IRLIESEALNRTLIRTAPAGLV 411

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                +  TI ++ TL+       +S   L   ++ ++     A + +  ++  +     
Sbjct: 412 LLSFADGETIMRNDTLI--AYEQDVSGEPLGKRLWRAYRDGAPAGNARTRVTRELAVERP 469

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
                   +      Y      +  L         I   + A+    E R  AE  N AK
Sbjct: 470 GHGTVYLDAHIVRTRYRGIDVLLCTLLD-------ITTRKQAEEKLREARAAAEFANKAK 522

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLNAI+G  E++E   M        +  +G I  S   LL +IN++L
Sbjct: 523 STFLATMSHEIRTPLNAIIGNLELMERAQMAVP----LRRRLGTIMSSSDALLRVINDVL 578

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           DLS+ E+ +  L      L  +V +   + +  A  KN+ +  +I P L++    D   +
Sbjct: 579 DLSKAESNQMVLESIPFDLRRVVNDVAAIFRPLADAKNLALTCRIAPDLANGYVGDSTRL 638

Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQ++ NL+SNA+KFT  GG  + V +     +GRG  I++ D G GI E  +PT+   + 
Sbjct: 639 RQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRGVEIAVSDTGIGIPEDSLPTLFDVYV 698

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +I     G GLGLP+ + I+   GG   + S+L EG   +A LP     +   +D 
Sbjct: 699 QTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALPLPEAQSGWQDDA 758

Query: 486 HEST 489
            E  
Sbjct: 759 PEPA 762


>gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
 gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
          Length = 613

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A++SHELRTPL  +  + E +        N      ++       + ++ L+N +L L
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++++  + L +  I   D     I   +  ++E+N+   +        +  D   + QV
Sbjct: 444 SKLDSTEHRLMKEWIDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + N++SNA+K++  GG V   +    G    IS+ D G GI +  +  +   F +   A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGL IA+ ++  HGG    +S+  +G  +   LP  
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605


>gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 923

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 123/257 (47%), Gaps = 12/257 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+    A++     R+ A+  N AKS FLA+MSHE+RTPL  +LG  E++   ++   
Sbjct: 423 HDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSL--- 479

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +    +Y+  I  S   LL LI+++LD+S+IE+G+  L  +A S  ++    +      
Sbjct: 480 -DARQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAAS 538

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397
           A  K ++I    DP L   V  D   +RQV+ NLLSNA+KFT   GRV + V        
Sbjct: 539 ATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFT-EHGRVMLRVRQVQREGE 597

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  + D G GIA  E   +   F Q   A     QG GLGL I+  ++    G+  
Sbjct: 598 SSVLAWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGLGLSISDRLVRLMSGELQ 655

Query: 458 IRSKLREGVEVIAILPN 474
           + S+   G      LP 
Sbjct: 656 VVSEPGLGSSFSVRLPL 672


>gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
 gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
          Length = 1555

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 12/251 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   ++D+  +RAEE N AK RFL ++SHE+RTP++ IL    +++   +      
Sbjct: 650 TTARKKLIIADQQLRRAEEINDAKIRFLTTVSHEVRTPISGILSSVGILDESLVDS---- 705

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +EY+G I  S  +LL+LI +ILD S+IEAG+ EL     +L+ ++ + I ++   A +
Sbjct: 706 NQREYLGFIKDSADYLLDLITDILDFSKIEAGKMELERVEFNLLKMLEDSINIVYRNAHD 765

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           + I +   ++P +   +  D   ++QV+LN LSNA+KFT+  G+V V V           
Sbjct: 766 RGINVIHFVEPDVPIFLIGDSHRIKQVLLNYLSNAIKFTSK-GQVMVKVSLVEKTNEGIK 824

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S++D+G GI +     +   F Q          G GLGL I++ + A  GG+   RS
Sbjct: 825 VMFSVEDSGVGIKDEFQEQLFQPFHQVGSL--RQYLGTGLGLSISKRLTAMMGGEVGFRS 882

Query: 461 KLREGVEVIAI 471
               G      
Sbjct: 883 TFGVGSTFYFT 893


>gi|308179222|ref|YP_003923350.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308044713|gb|ADN97256.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 624

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 8/237 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           + +F++++SHELRTPL ++  + E +        + E    ++         ++ +INE+
Sbjct: 382 RKQFVSNVSHELRTPLTSLRSYIEALSDGAW--KDPEVAPGFLKVTQEETDRMIRMINEL 439

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPSLSSVWA 363
           L LSR+++G   +    +++ ++    +    +  ++ +       I ++       V  
Sbjct: 440 LSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEI 499

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     QV+ N+++NA+K++  GG V   +  T      ISI D G GI   ++  V   
Sbjct: 500 DTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETH-NRVIISISDQGLGIPRADLGHVFDR 558

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A   A+ G GLGL I++ ++   GG+  + S   +G      LP       
Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYEPYEEE 615


>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 948

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|289620411|emb|CBI53269.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 2114

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 117/263 (44%), Gaps = 22/263 (8%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +KSRFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1419 KLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQTSANS 1474

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L+        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1475 LIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPA 1534

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGP 410
             V  D+  +RQV+LN++ NA+KFT   G V                       SI D G 
Sbjct: 1535 WVKGDKVRIRQVLLNVIGNAIKFTNE-GEVFSRCKVVVPDDGPLHENEIMLEFSIIDTGR 1593

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G  + E   +   F Q   +      G GLGL I++ ++  HGG+    +   EG     
Sbjct: 1594 GFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGTAVPGEGSTFTF 1653

Query: 471  I----LPNT---RVLNFIPEDNH 486
                 LP       +   P    
Sbjct: 1654 TARFGLPTESDNPDMAAAPAPTP 1676


>gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 884

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 147/290 (50%), Gaps = 21/290 (7%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I       +V ++    E+ +L+    + + ++ E      E +  K+ F+ ++SHEL
Sbjct: 599 IIIKRATQSISVTLVPVMTERGELLGACLIGRDITREV-----ESDRLKTEFIGTVSHEL 653

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+ +I G+++++ + ++G +N+ T KE++  I  + + ++ +IN++LD+++IE G  E
Sbjct: 654 RTPMTSIKGYTQLLAMGSLGEVNS-TQKEFLNTIAHNSERMIAIINDLLDITKIETGSVE 712

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L  + + + D++   +   +    ++  E    + P+L ++W+D + +RQV  N+LSNA+
Sbjct: 713 LQMARLMVADVMSSVVGNARAEITQRQQEFSLSLAPNLPTIWSDMERIRQVASNVLSNAI 772

Query: 381 KFTAIGGRVHVTVGW---------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           K+T  GG++ V                      R   ++++D+G GI   E   V   F 
Sbjct: 773 KYTPNGGKISVKAFEINFNDIPNKQREGLQVGRRYIALAVQDSGVGIDPSEHEKVFDRFY 832

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +    +K    G GLGL + + ++   GG+  + S + +G     I+P  
Sbjct: 833 RTENPLKIEAGGTGLGLSLVRPLIQLMGGRIWLESAVNQGTTFTFIMPVA 882


>gi|115526592|ref|YP_783503.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115520539|gb|ABJ08523.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 1123

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 159/362 (43%), Gaps = 11/362 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           TL  ++    +      +     +    +        L Y       P+  A  +  +  
Sbjct: 549 TLGAILPQAIYQRINSQLGHYLVVFTGSAGLVALTLSLIYLQTSVTMPIDPAQISDVLW- 607

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRK 240
                     ++   +++   +     ++       Q       I       +     ++
Sbjct: 608 ---KAFFALTIIIGVVAWLFVLARQSRQAAEAETRRQTTLLMQEIDAHSRTDAELQRAKE 664

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  NLAKSR++  +SHELR+PLNAI G+++++E            ++ +  + RS +H
Sbjct: 665 AAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ---DASLLPKPRDQVRQVRRSAEH 721

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           L  LI+ +LD+S+IEAGR  LS   + L + + + + M +L A  KNI+   +    L  
Sbjct: 722 LSGLIDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVGMFRLHAAAKNIDFVFERPNYLPP 781

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V+ADEK +RQV++NLLSNA+KFT  G    +             I+D GPGI  G++  
Sbjct: 782 VVFADEKRLRQVLINLLSNAIKFTQQGSVHFIMHYRNP--VAEFEIRDTGPGIHAGDLER 839

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +G++ +     G GLGL I++ +    GG   + S + +G      +  + V N
Sbjct: 840 IFAPFERGALGVSQPHTGTGLGLTISKLLSGVMGGDIRVSSAVGKGSTFYVKMLLSEVTN 899

Query: 480 FI 481
             
Sbjct: 900 PT 901


>gi|312888745|ref|ZP_07748309.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298745|gb|EFQ75850.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 539

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            S + +++ Q +      ELE ++    E  ++ ++   AK  FLA+MSHE+RTPL +I+
Sbjct: 124 NSLINLVNYQRQIKRQNIELEKSRQELSEAVEQTQKIREAKEIFLANMSHEIRTPLTSII 183

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + +++   +    N   +E I  +  S Q LL L+N+IL+ ++I+AG+  ++ +  ++
Sbjct: 184 GLNHLLKQSPL----NADQQELIKLMEYSSQSLLTLVNDILESAKIDAGKITINRAETNI 239

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
           I++V+    +    A+EK + +    D  L  ++ AD   + Q++LN+++NA+KFT  GG
Sbjct: 240 INLVQTICNLSSPIAKEKGLALSCHFDTDLPSAILADSLRLNQILLNIINNAIKFTTEGG 299

Query: 388 -RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             V +           +   I D G GI++  I  +   F Q  +       G GLGL I
Sbjct: 300 VEVTLKAIQKEPNRVLLQFIITDTGIGISQSGISKLFNRFEQAEVKTWEKFGGTGLGLSI 359

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
            + I    GG+  + S   +G      
Sbjct: 360 VKRISELKGGELTVLSTPGQGTTFTFT 386


>gi|228913339|ref|ZP_04076972.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846248|gb|EEM91267.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 422

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 195 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 251

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 252 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 310

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 311 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 369

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 370 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 415


>gi|228989787|ref|ZP_04149767.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
 gi|228995977|ref|ZP_04155633.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|229003594|ref|ZP_04161410.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228757636|gb|EEM06865.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228763750|gb|EEM12641.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|228769934|gb|EEM18517.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
          Length = 418

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +S FLAS++HELRTPL  + G++++    +  P   E  ++Y+  I     ++ NL+ 
Sbjct: 194 KERSEFLASVAHELRTPLTYVRGYADIAMKNSTPP---EQRQKYLSIIKDEADYITNLVQ 250

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++  L+++E   + +    + L   +   +  + +  + K+I +      SL S+  DE+
Sbjct: 251 DLFLLAQMEKHNFSIQAKEVHLQTFLSRIVTKVNIMYEAKHIIVSSTCPSSL-SIALDEQ 309

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
              QVI+N+L+NA   +    R+ ++V     +   I+I+D G GI E +IP +   F +
Sbjct: 310 RFEQVIINILNNAYVHSPEHSRITISVTEHKTQ-LEIAIQDTGEGIPEEDIPHIFERFYR 368

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A   +  G GLGL I + I+  HGG+  + S++ +G      LP +
Sbjct: 369 VDKARSRSTGGTGLGLAIVKEIVELHGGEITVTSEVNQGSCFTMSLPIS 417


>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 948

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1651

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 16/342 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P  V         AL +          + L     +  +    +   L    +   + +
Sbjct: 272 APRLVGDLTQRFGTALPSGPWHIPPQQAVILPVSPGSESTQTVVLVAGLNPCRLFDDAYR 331

Query: 219 AEKDDLIAELEVA---KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE 272
           +  +    ++  A       +E R+RAE     + AK+ F +++SHE RTPL  +LG  E
Sbjct: 332 SFLNLAAGQIGAAIGYARAYEEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLE 391

Query: 273 VIELETMGPL--------NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +  +             ++   +  I   HR+G  LL L+N +LD SRIEAGR ++   
Sbjct: 392 ELLAKPQLAAGGDNARVGSDIEDRALIEITHRNGLRLLKLVNALLDFSRIEAGRMQIHMQ 451

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              +     E   + Q   +   + +  +I  +   V  D +   +V++NLLSNA KFT 
Sbjct: 452 PTDVASFTAELASLFQSAIEAAGLRLEVEIPAAPVVVQLDREMWEKVVMNLLSNAYKFTF 511

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + V V   +G G  +S+ D+G GIAE E+P +   F + + A   + +G G+GL +
Sbjct: 512 -FGTIRVAVRVVAGAGVEVSVTDSGIGIAEEEVPRLFERFHRVAGAPGRSVEGSGIGLAM 570

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            Q ++  HGG   + S L EG      LP+  V    P++  
Sbjct: 571 VQELVKLHGGTVRVDSALGEGACFTVSLPHGAV-PAQPDEES 611



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 110/325 (33%), Gaps = 35/325 (10%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237
            ++  H+ ++   G+     + F  I            L     +   +     A   + E
Sbjct: 1052 VVRAHLAELRRTGVPVRYENRFKRIDGTWRWVAWTLALDPDTARIHGVGRDVTADKETTE 1111

Query: 238  TRKRAEEENLA--KSR----FLASMSHELRTPLNAILGFSEVIELETMGPLNNETY-KEY 290
              + AEE      K          ++H+    L  I G  +++  +  G    E   +  
Sbjct: 1112 ALRHAEEALRMAQKMEAIGKLTGGVAHDFNNLLQVIGGNLQLLAKDVAGSEKPEQRVRNA 1171

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  + R      NL +++L   R    R  L+   ++L   VR    ML+ RA    +EI
Sbjct: 1172 LAGVARGA----NLASQLLAFGR----RQPLAPKVVNLGRFVRGLDDMLR-RALGDGVEI 1222

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------------WT 396
               +   L +   D   +   +LNL  NA       G++ +  G               T
Sbjct: 1223 ETIVSGGLWNTLVDPFQVENALLNLAINARDAMNGHGKLTIEAGNAALDDAYAKRNAEVT 1282

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             G+   +++ D G G+       V   F       K   QG GLGL +    +   GG  
Sbjct: 1283 PGQYVMLAVTDTGAGMPPEVRERVFEPFF----TTKPEGQGTGLGLSMVYGFVKQSGGHV 1338

Query: 457  LIRSKLREGVEVIAILPNTRVLNFI 481
             I S+   G  +   LP  R    +
Sbjct: 1339 KIYSEEGHGTTIRIYLPRVREQEDL 1363


>gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa]
          Length = 2177

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 19/249 (7%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +KSRFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1482 KLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQTSANS 1537

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L+        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1538 LIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPA 1597

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------WTSGRGQYISIKDNGP 410
             V  D+  +RQV+LN++ NA+KFT   G V              + +      SI D G 
Sbjct: 1598 WVKGDKVRIRQVLLNVIGNAIKFTNE-GEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGR 1656

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G  E E   +   F Q   +      G GLGL I++ ++  HGG+   ++ L +G     
Sbjct: 1657 GFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGKAVLGKGSTFTF 1716

Query: 471  I----LPNT 475
                 LP  
Sbjct: 1717 TARFGLPTE 1725


>gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 782

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 362 FWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALSTAREEAERASRAKSEFLSRMSH 421

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  IG I R+GQHLL LINE+LD++RIEAG 
Sbjct: 422 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 476

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             L+   + L  ++RE ++++   A + +IE+      P    V AD + + QV+LNLLS
Sbjct: 477 VSLNLEPVPLSSVLREALVLVSPMATDASIELSELPQLPDELGVVADRQRLIQVLLNLLS 536

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + VG ++     +S+ D G GIA   I  +   F +       + +G
Sbjct: 537 NAIKYNRPDGKVRIEVGQSA-GRVTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 593

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   + + L EG      LP+  V    
Sbjct: 594 TGLGLALSKSMLEMMHGGLSVDTTLNEGCRFTLELPSVLVRPPA 637


>gi|83950180|ref|ZP_00958913.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838079|gb|EAP77375.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 472

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 164/442 (37%), Gaps = 19/442 (4%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100
           +      +     +       +  ++    +  +   + +     + +  +KV+  + + 
Sbjct: 27  YARVGTSLFWQRQMIYAAALGLEAYYYSWQLALLNLALMIISEIYDFACFRKVLRMNARD 86

Query: 101 G-EVYVWRIWLLVGQIAIGL---CWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALS 155
                 +   + +G          + L   +  G  T         A  L A ++   L 
Sbjct: 87  IKSARKYIKLIYLGTAISAANICIYALTVAILQGHTTHFLSMFMLFAAALFASMNNHQLI 146

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
             ++          + + +      +  V       +  +    F  I      S +   
Sbjct: 147 PILIFRLAIYGATFLFIPIYDIWATNAPVTSDLWMQLFTSLFVMFFIIDCSRVSSGLYRR 206

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           + Q +  DL  E E  K           E + AKS FLA++SHELRTPL +I G  ++I 
Sbjct: 207 TLQ-QMADLQTEHEKTK-----------EASAAKSEFLATVSHELRTPLTSIKGSLDLIA 254

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +G +     +  +    R+   L  LIN++LDL ++EAGR +     ++  + + + 
Sbjct: 255 ARALGEI-PPKMEPILTIAQRNSTRLNALINDLLDLQKMEAGRMDYFMEELNAAEFLEQS 313

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I   +  AQ  ++    +  P+   +  D   + QV+ N+LSNA KF+  G  V +    
Sbjct: 314 IATNEPFAQRFDVTFELEPTPANLFITCDASRLDQVLSNILSNAAKFSETGSTVSIRSDV 373

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    +S+ D G G+ E     V   F Q   + K    G GLG+ I++ IM  H G+
Sbjct: 374 V-GAMLRVSVIDRGVGLPENVKQKVFDEFSQLDSSDKRKVGGTGLGMNISKRIMEAHDGR 432

Query: 456 FLIRSKLREGVEVIAILPNTRV 477
                    G      LP   V
Sbjct: 433 IDYVKNEGPGTTFFIELPLANV 454


>gi|304312878|ref|YP_003812476.1| hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
 gi|301798611|emb|CBL46841.1| Hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
          Length = 874

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 174/420 (41%), Gaps = 26/420 (6%)

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
             T   Q+     +  ++LA                        W    L+  + +    
Sbjct: 268 WITLGIQDSSIIFFLCLSLASVLLFAQDYLGYR----GEEAWQQWSSRALLTLVCLVAL- 322

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            ++ L                    ++L I  L    L   VF++ F  V  +S  A+++
Sbjct: 323 AVVVLPLGFVAVMSVYLALIVVIYCMSLGIVRLRKGGLDVWVFVAGFGAVFLVSLAALLA 382

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
               ++S   M+      + +    L       +            L    S     +++
Sbjct: 383 SLGFNVSTELMVYGMKIAWAFELIALALGLALRIRA--------NTLRQLGSEQGMLKEQ 434

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  + AK+ FLA +SHE+RTP+N ILG  E++ +  + P        Y+  I+ +G  L
Sbjct: 435 AE--SRAKTEFLAKVSHEIRTPMNGILGLVELLGMTRLSP----EQSRYVSAINSAGHTL 488

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           + ++N+ILD S++  G+  L+E    L +++ +C ++ ++ A++K +++   I   +   
Sbjct: 489 VEVVNDILDYSKLVIGKMTLNEQEFDLRELLEDCAVIFEMPARKKALDLRIMIRAGVPLR 548

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY--ISIKDNGPGIAEG 415
           +  D   +RQV+LNLLSNA+K+T   G + V +  T            +++D+G GI   
Sbjct: 549 IHGDAMRLRQVVLNLLSNAIKYT-EYGHIFVRLSLTDEIQDDKVVLRFAVEDSGCGIDRA 607

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  SF Q    I   E G GLGL I+Q I+   GG   + S L  G      LP  
Sbjct: 608 DQSRLFQSFSQIHNDITERETGTGLGLVISQQIIGLMGGTIGVDSTLGRGSVFWFTLPVK 667


>gi|149911169|ref|ZP_01899794.1| putative two-component sensor [Moritella sp. PE36]
 gi|149805770|gb|EDM65767.1| putative two-component sensor [Moritella sp. PE36]
          Length = 544

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 10/254 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           + E+        +   EE N  KS FLA++SHE+RTP+N ILG  ++++   +       
Sbjct: 149 KNELKNRKLQNEKAILEESNKLKSLFLATISHEIRTPMNGILGIVQLLKDTPLNN----Q 204

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E +  I      L+ ++N+ILD S++E G+  L+E   ++I+ V + +      A  K
Sbjct: 205 QVEMLDTITNRSDDLITILNDILDYSQLETGKVALNEVDFNVIESVEDVVKRFSAAAHLK 264

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----Q 401
            + I    D S   ++  D + ++Q++ NL+ NAVKFT + G +++ V +          
Sbjct: 265 GLSITTAFDNSTPVIFKGDVERIKQILSNLVHNAVKFTQV-GEINIIVNFEETATSFYQV 323

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD G GI++     +   F Q   ++     G GLGL I+ ++     G   + S+
Sbjct: 324 NIIVKDTGIGISKIAQKNLFQPFTQADNSMSRTFGGTGLGLAISANLTKAMNGTISVESE 383

Query: 462 LREGVEVIAILPNT 475
             +G   +  +P  
Sbjct: 384 ELKGTAFLLSIPLK 397


>gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39]
 gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39]
          Length = 814

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 11/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +    +    AEE ++AKS FLA+MSHE+RTPLN I+GF++++    +   
Sbjct: 275 RDITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPLNGIIGFADLVLKTEL--- 331

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E   +Y+  ++ S   LL +IN+ILD S+IEAGR EL   A  L ++  +   ++  +
Sbjct: 332 -SEVQLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEASDLHELSCQAADIITFQ 390

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397
            Q+K IE+   +   L   +W D   ++QVI+NLLSNA KFT   G + + +        
Sbjct: 391 IQQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTDT-GEIELKIEVLEYLSA 449

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  S++D G GI   +   +  +F Q  ++      G GLGL I+  ++A    + 
Sbjct: 450 EAARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGLGLTISNELLALMDSRL 509

Query: 457 LIRSKLREGVEVIA 470
            + S    G     
Sbjct: 510 QLMSSPGVGSTFFF 523


>gi|290889604|ref|ZP_06552694.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
 gi|290480802|gb|EFD89436.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
          Length = 619

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ + EN  K+ F++++SHELRTPL ++  + E ++   +     +  +E++G  H   Q
Sbjct: 370 RQLKLENDQKN-FVSNVSHELRTPLTSVNSYIETLQEGALT--QKKIAREFLGVAHDETQ 426

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI----- 354
            ++++IN++L+LSR++ GR ++   A++    +   +    +  ++ +            
Sbjct: 427 RMIHMINDLLELSRMDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIR 486

Query: 355 ---DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                    V  D     QV+ N+++NA+ ++  GG + + +  T      +SIKD+G G
Sbjct: 487 NYDQKKSCYVEIDSDKFMQVVDNVINNAINYSPDGGNIEIGINET-DDSIILSIKDHGLG 545

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++  V T F +   +    + G GLGL I++ ++    G+  + S +  G      
Sbjct: 546 IPKKDLENVFTRFYRVDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFIS 605

Query: 472 LPN 474
           LP 
Sbjct: 606 LPK 608


>gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 622

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 372 MIDDQERLEFEEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 427

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 428 EDLELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQL 487

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-G 400
           R + + +EI     P +     D   + Q+ +NLL+NAVK T   G +            
Sbjct: 488 R-KPEGVEITLDACPDII-FNIDRNRLWQICMNLLTNAVKHTKK-GSIWFGYTLEDEGKM 544

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGLGL I + ++   GG   + S
Sbjct: 545 VKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLGLAICKGLVLKMGGNISVIS 600

Query: 461 KLREGVEVIAILPNTR 476
           +   G   I  LP  R
Sbjct: 601 EEGFGSTFIFTLPMKR 616


>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Enterobacter sp. 638]
 gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 949

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +  + 
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVER 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLVVRKQLG 566

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +  ++  D   ++QVI NLLSNA+KFT + G + + V   +G    I I+D 
Sbjct: 567 LYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDV-GCIILHVSR-AGDYLSIRIRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G + 
Sbjct: 625 GVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEPGMGSQF 684

Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494
              +P       +       +   C+
Sbjct: 685 TIRIPLYSAQYPVKSPAEGLSDKMCW 710


>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
 gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
          Length = 1112

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 148/360 (41%), Gaps = 6/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              + W L+  +           + K     +  +I  +       + F++   + +  +
Sbjct: 313 LNSIHWALVVELPEKEAFSRVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWA 372

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S  + +     ++    ELE    + 
Sbjct: 373 AERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKILLIKSQNK---ELENNLLII 429

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GPL    +K  +  I 
Sbjct: 430 RKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLT-AAHKYQLDIII 488

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++ + A+ L    R  + +      +K + I  ++ 
Sbjct: 489 NSGQRLATLVDDLLDYHKMRYGALDIQKCAVDLSSATRLVLELSHHLLGKKMLRIINQVP 548

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   
Sbjct: 549 EQAVWVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISTTYM-DDKIRVQVVDTGQGIPAD 606

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q S       QG GLGL I + ++   GG   + S+   G      LP  
Sbjct: 607 QLEQIFEPLIQASRDASRYRQGAGLGLSITRQLIELMGGTLYVSSQPMVGTTFSFTLPLA 666


>gi|206968294|ref|ZP_03229250.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068335|ref|ZP_04201638.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
 gi|206737214|gb|EDZ54361.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228714796|gb|EEL66668.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
          Length = 463

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLV-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     ++++V     R  +I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIINILNNAYRHSKEHSHINISVT-EEHRRIFITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARTRATGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|77920672|ref|YP_358487.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546755|gb|ABA90317.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 477

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 142/336 (42%), Gaps = 15/336 (4%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              L   +   +    L     L      +AL   +I+        LAG     +   T 
Sbjct: 145 VIFLQVGTGLGMVREPLRELRTLLLIFSPIALLAVSILG-----WFLAGRTLAPVENLTR 199

Query: 203 ITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
               +   N+   L  ++  D+L   ++   S+      R EE      +F    SHELR
Sbjct: 200 AMRRINVENLSQRLPLRSSGDELARLVDTFNSMLG----RLEESFRKIKQFSGDASHELR 255

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  + G +EV       P   E +++ +         +  +I+++L L++ E G+  L
Sbjct: 256 TPLTILKGETEVALRWAKTP---EEFRKMLISGMEEIDRMSRIIDDLLLLAKSEGGQKPL 312

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAV 380
           +   +SL D+++E  +  +  AQ K+IE+    +      + AD+  +RQV LNL++NA+
Sbjct: 313 TIKEMSLSDLLQELYLQGRSLAQPKSIELVLHPNVTEEIRILADKMRLRQVFLNLIANAI 372

Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            +T  GG+V +++          + + D G GI    +P +   F +   A    + G G
Sbjct: 373 NYTPDGGQVEISLSVDGEQDEVIVKVSDTGIGIPAEHLPHIFDRFYRVDRARNREDGGTG 432

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL I  S +  HGG+  + S   +G      LP  
Sbjct: 433 LGLAIVDSFVKAHGGRVEVFSVPEKGTTFTVFLPRK 468


>gi|307688976|ref|ZP_07631422.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 673

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 235 SDETRKRAEEENL----------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           S E +K+AEE              K+ F  ++SHELRTP+N I    +V           
Sbjct: 390 SIEDKKKAEEAEQLLELKGKEEKMKNDFFTNISHELRTPINVIYSALQVENDYLKNDTKA 449

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   +Y   I ++   L+ LIN ++D++RIE   +E +  + ++I IV +  + +    +
Sbjct: 450 EVIIKYNRIIRQNCLRLMRLINNLIDITRIETSFFEPNFQSGNIITIVEDITMSIVQYIE 509

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            KNI +    +   S V  D   + +++LNLLSNAVK+   GG + V +   S +   IS
Sbjct: 510 SKNISLIFDTEIEESYVKFDPDLIERIVLNLLSNAVKYGREGGNIEVYMYENSAKSIAIS 569

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKD+G GI + +   +   F +   ++    +G G+GL + + ++  H G  +  SKL +
Sbjct: 570 IKDDGIGIPDEKKERIFDRFLKVDASLSRKTEGSGIGLALVKQLVEIHQGTIVFNSKLNQ 629

Query: 465 GVEVIAILP 473
           G E I  LP
Sbjct: 630 GTEFIITLP 638


>gi|239997233|ref|ZP_04717757.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 927

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K+  D+   + EE + AK +FLAS+SHELR+PLN+I+G++++  ++     N +   + +
Sbjct: 535 KASLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDLALMDVG---NVDRMTDAL 591

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I R+      LIN+ILDLSRI +G  +LS  ++++   + E     +     KNI++ 
Sbjct: 592 GVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIAGSISEVAKSFEAGFASKNIQLS 651

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              +   + +  D   ++QVI NLLSNA+KFT+ GG VHV             +KDNG G
Sbjct: 652 INCEDDHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNYL-FRVKDNGKG 710

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIA 470
           +   ++  V   F QG         G+GLGL I +S++  HGG+    S     G     
Sbjct: 711 MTREQLSHVFERFYQGKNEHNKH--GLGLGLSIVKSLVEMHGGEIYAESDGPNTGTTFYV 768

Query: 471 ILPNTR 476
            LP   
Sbjct: 769 TLPIAP 774


>gi|229177175|ref|ZP_04304564.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
 gi|228606356|gb|EEK63788.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
          Length = 463

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFITRIAEKVNAMYKERYIKVSFSCPPTLV-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     ++++V     R  +I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIINILNNAYRHSKEHSHINISVT-EEHRRIFITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARTRATGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 915

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 418 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 473

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 474 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 533

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 534 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 591

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 592 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 651

Query: 469 IAILPN 474
              +P 
Sbjct: 652 TLRIPL 657


>gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
 gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
          Length = 814

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 28/259 (10%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE     KS FLA+MSHE+RTP+NA+ G SE++  E +    +   +EY+  I  S 
Sbjct: 321 RRIAE----MKSAFLANMSHEIRTPMNAVTGVSELLLREDL----SAKQREYVNTIAHSS 372

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL++IN+ILD S+IE+G++ L E   SL  ++ +   +  L+   K +  +  +D  L
Sbjct: 373 NSLLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLDEKL 432

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAE 414
            + ++ D   ++Q+++NLL NAVKFT   G + + +            ++++D G GI +
Sbjct: 433 PAFLYGDMTRVKQIMVNLLGNAVKFTEQ-GHICLRLSGRIENGDFWLVMTVEDTGIGIRK 491

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----- 469
            ++  +  SF Q       +  G GLGL I++++     G   + S   EG         
Sbjct: 492 QDMDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVESVYGEGSSFTAAVRQ 551

Query: 470 ----------AILPNTRVL 478
                        P  +VL
Sbjct: 552 RPQGEDKLVHITWPREQVL 570


>gi|83647357|ref|YP_435792.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635400|gb|ABC31367.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 935

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 4/277 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                      L ++    +  Q  KD        +  ++D + ++    ++ K+ F+++
Sbjct: 634 LFLELRLNALQLERAPWVEIHLQRSKDATGKMDGYSGFIADISERK--RLDILKNEFIST 691

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPL AI G   +++   +G L  +  K+ +   + + + LL LIN++LD+ +IE
Sbjct: 692 VSHELRTPLTAINGSLALLDSGRLG-LLPDQAKQMLHIAYSNCERLLRLINDLLDIQKIE 750

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           +G  E S     L D++ E +   +  A++ ++ +      S + V AD   +RQV+ NL
Sbjct: 751 SGGLEFSFERADLRDLIEEALNANRQLAEKASVTLVFATPESPALVKADRDRLRQVLDNL 810

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +SNA+KF+     V +T+   +     ++++D GPG+       +   F Q   +    +
Sbjct: 811 ISNAIKFSPADEAVTLTLNAHA-HYWEVAVQDQGPGVPPEFRNKIFQKFAQADSSDTRLK 869

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I++ I+  H GQ    S+   G      L
Sbjct: 870 GGTGLGLSISREIVQRHHGQIGYHSEANCGATFYFRL 906


>gi|166712854|ref|ZP_02244061.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 916

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 145/313 (46%), Gaps = 23/313 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             +     L  Q + +  +    L+ +    +      T    +   ++ + Q       
Sbjct: 483 GIWSASQTLRFQLLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRLRRLTAWQ------- 535

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   L+   ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 536 --------LAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 583

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           T + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  ++ E   ++   AQ+
Sbjct: 584 TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLLAELEALMAPLAQD 643

Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           + +    +I      +   D   +RQ++LNLL+NA+KFT   G V + +      +G   
Sbjct: 644 RGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 702

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GG   + S+L
Sbjct: 703 EVADTGPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRL 762

Query: 463 REGVEVIAILPNT 475
             G   +  LP  
Sbjct: 763 GAGTRFVVDLPLR 775


>gi|330504989|ref|YP_004381858.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919275|gb|AEB60106.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 778

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 168/447 (37%), Gaps = 35/447 (7%)

Query: 55  FVLLVANIGTWFTQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
              +  N        P  P W+   T  +  +    G +   S +   E   W   LL+ 
Sbjct: 200 LYQISVNGAGIEFFWPNSPWWANAATPFLIGSAALFGCQFARSFLHTAEHSAWVDRLLLL 259

Query: 114 QIAIGLCWTLLTL--VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
            +A G    +L L                    ++ A  I A    M     F+  +   
Sbjct: 260 LMASGAVVMILALCISYATALRLATYLALLFTVVIFAAGILAWLRGMRVARYFIFAWTAF 319

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +               +L  +      F T     +  +    L   A  D + A  E  
Sbjct: 320 LVGGIVN---------TLMVLGYLPNVFLTMYASQIGSALEVSLLSLALADRINAMKEER 370

Query: 232 KSLSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             +  E  ++ EE N         K  FLA+++HELRTP+N ++G  E+++   M     
Sbjct: 371 ARILQEAGRKLEELNQELADSNRFKDEFLATVTHELRTPMNGVIGSLELMQTVKMDV--- 427

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y      S + ++ ++N+IL L+ ++AG+      A SL  +          RA+
Sbjct: 428 -ELEQYQKTAAASARDMMRMVNDILALTELQAGKLYPRREAFSLRGLFDGLRAQYAPRAE 486

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K +    ++D SL  ++  D   + Q +  LL NA+KFT+ GG V + VG    +G   
Sbjct: 487 DKGLTFTLELDDSLPDTLEGDATKLAQALGYLLDNAIKFTSEGG-VRLQVGRAGSQGNNL 545

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G G A GE   +   F Q   ++     G+G+GL I + ++   GG     
Sbjct: 546 PLSVMVSDTGIGFAHGE-GDLYQRFHQLDGSMTRKYGGLGIGLAICRQLVDLLGGSLSHE 604

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNH 486
           S+   G      +P       +PE   
Sbjct: 605 SQPDVGSRFRLNVPL-----TLPEQQS 626


>gi|302547112|ref|ZP_07299454.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464730|gb|EFL27823.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1304

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/410 (24%), Positives = 168/410 (40%), Gaps = 27/410 (6%)

Query: 92   KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
            +    +  +G+    R  + + Q+  G       L      +   L I     +L  + +
Sbjct: 705  RFRLGESLVGQAARSRRTIAIEQLPPGYVTVSSGLGAAEASSLLVLPIVVEEQILGVIEV 764

Query: 152  SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY------ 205
            +++S F   +  FL      + ++   I++    D  L                      
Sbjct: 765  ASVSRFTQVHRDFLDQLMETIGVNVNTIVANARTDELLEESQRLTAELRARSQELQVRQD 824

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258
             L  SN ++    A       ++E      ++ R+  EE        +  KS FLA+MSH
Sbjct: 825  ELQNSNAELEDKAALLAAQNRDIETKTREIEQARQELEERARQLTLASKYKSEFLANMSH 884

Query: 259  ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            ELRTPLN++L  ++++       L      EY G IH +G  LL LI++ILDLS++EAG+
Sbjct: 885  ELRTPLNSLLILAQLLAQNPARNLT-PKQVEYAGVIHSAGSDLLQLIDDILDLSKVEAGK 943

Query: 319  YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             ++    + L  ++       +    +K ++    + P++   +  D+  +RQV+ NLLS
Sbjct: 944  MDVEPERVPLQRLLDYVEATFRPMTAQKGLDFRISVSPAVPAELVTDDSRLRQVLRNLLS 1003

Query: 378  NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426
            NAVKFT   G V + +   +                  + D G GIAE ++  +  +F Q
Sbjct: 1004 NAVKFT-ESGAVELRIAPAAESDLPREVRGQGPALAFRVVDTGIGIAEQQLEAIFAAFQQ 1062

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                      G GLGL I++ I    GG     S L EG      LP  R
Sbjct: 1063 ADGTTSRKYGGTGLGLSISREIAHLLGGAVHAASTLGEGSTFTFYLPVGR 1112


>gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
 gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
          Length = 669

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 274 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 329

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K +++
Sbjct: 330 IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGMQL 389

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 390 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 448

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G
Sbjct: 449 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVG 508

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 509 SEFTCIIPFRLQADSNP 525


>gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 372 MIDDQERLEFEEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 427

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 428 EDSELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQL 487

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRG 400
           R + + +E+     P +     D   + Q+ +NLL+NAVK T   GR+          + 
Sbjct: 488 R-RPEGVEMTLDACPDII-FNIDRNRLWQICMNLLTNAVKHTKK-GRIWFGYTIEAEEKM 544

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGLGL I + ++   GG   + S
Sbjct: 545 IKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLGLAICKGLVLKMGGNISVIS 600

Query: 461 KLREGVEVIAILPNTR 476
           +   G   I  LP  R
Sbjct: 601 EEGFGSTFIFTLPMKR 616


>gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
 gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
          Length = 565

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E R RAEE   +   F+A ++HELRTPLN +LG +E++     G   +E  +  + ++ 
Sbjct: 192 QEARSRAEESERSTKEFVAMINHELRTPLNGLLGSAELL----DGTELDEEQRTLLTNLT 247

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG  L ++IN+ILD S++ AG  EL  S   + ++      + + RA+EK IE      
Sbjct: 248 HSGDLLRHIINDILDFSKMNAGMMELIPSTFQMSELRNMIHGIFEPRAREKGIEFTITES 307

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             L +    D + + Q+++NL+ NAVKFT+  G V VT  W++     +S+ D G GIAE
Sbjct: 308 GELPTSFIGDFERIGQILVNLVGNAVKFTSE-GSVTVTARWSA-GSLTMSVSDTGVGIAE 365

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                + + F Q     K   +G GLGL I ++++    G   + S++ +G      LP 
Sbjct: 366 EAKKELYSPFVQADRTAKRHFEGTGLGLAICKNLVELMSGTIALESEVGKGSCFEVTLPL 425

Query: 475 TRVLNFIPEDNHES 488
            +V + +P     S
Sbjct: 426 -KVADKLPVGESSS 438


>gi|148252242|ref|YP_001236827.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146404415|gb|ABQ32921.1| Sensor histidine kinase with a response regulator receiver domain
           (two-component signal transduction system)
           [Bradyrhizobium sp. BTAi1]
          Length = 1124

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 158/340 (46%), Gaps = 12/340 (3%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             L +  + AL+  M+      +       +S         L I     +   +++   +
Sbjct: 572 VFLTSAGLVALTLGMIYLETSAALPGFKGIISDVLWKVFFALSI-----IIGVVTWLFVL 626

Query: 204 TYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
                ++       Q +     I   +   +     ++ AE  NLAKSR++  +SHELR+
Sbjct: 627 AQQSRRAAEAETRRQTQLLIQEIEAHKRTDAELQRAKEVAESANLAKSRYVVGLSHELRS 686

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI G+++++E            ++ +  + RS  HL  LI+ ILD+S+IEAGR  LS
Sbjct: 687 PLNAISGYAQLLEQ---DTSLAPKPRDQVRVVRRSADHLSGLIDGILDISKIEAGRLYLS 743

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
              + L + + + + M +L+A  K I+   K    L   V+ADEK +RQ+++NLLSNA+K
Sbjct: 744 RDEVRLSEFLDQLVGMFRLQAAAKGIDFVFKRPAVLPLVVYADEKRLRQILINLLSNAIK 803

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V   V + S       + D GPGI   ++  +   F +G++     + G GLG
Sbjct: 804 FTQE-GSVQFVVHYRSP-VAEFEVIDTGPGIQPDDLERIFAPFERGALGAAQPQTGTGLG 861

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           L I++ +    GG   + SK+  G      +  + V N  
Sbjct: 862 LTISRLLAGVMGGDIKVESKVGLGSTFKVKILLSEVTNPT 901


>gi|229521544|ref|ZP_04410963.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229341642|gb|EEO06645.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 576

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKQSTSSSQQI 448


>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 948

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|288555026|ref|YP_003426961.1| sensory transduction histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546186|gb|ADC50069.1| sensory transduction histidine kinase [Bacillus pseudofirmus OF4]
          Length = 469

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 143/325 (44%), Gaps = 10/325 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           +  +  + L +        + +  +    ++  +L   ++  L   L     I   L K 
Sbjct: 149 VMVMVYYELDHQYKQVLIMIGLTFTITMALTGFIL-WFISRRLTAPLREMNRIALQLAKG 207

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           +         KD++         ++ E     E     ++ F+ ++SH+LR+PL +I GF
Sbjct: 208 DFSQHVRVNSKDEIGQLGSTFNYMAKE----LENIEQMRTDFITNVSHDLRSPLTSIKGF 263

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
              +     G + +     Y   +    + L  L+N++LD+S+++ G   +  +  +L +
Sbjct: 264 LTALLD---GTIADHRKNHYYTIMKNETERLSKLVNDLLDMSQLQHGHITIKPTTYNLSE 320

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +R     ++ + Q  ++ I  + +     V+AD+  + QV++NL+ NA+  +     V+
Sbjct: 321 QIRLVAAKMEPQLQASDLFIELEEEAGDVHVFADKDRIEQVLINLIENAIHHSPPQKPVY 380

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V +     +   +SI+D G GI E ++  +   F +   A    ++G G+GL I +SI+ 
Sbjct: 381 VHLSQEEDK-VKVSIEDFGEGIKEEDLTYIWERFYKTDKARS-KKKGTGVGLSIVKSIID 438

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
            H     ++S++  G   I  LP +
Sbjct: 439 LHQSSIQVKSEVGIGTTFIFTLPQS 463


>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
 gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
          Length = 1113

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 158/375 (42%), Gaps = 9/375 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 318 WALVVELPEKEAFARIRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVS 377

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETR 239
           +  + +  +       +         + +S  + +   +A+  +L + ++V +  +DE  
Sbjct: 378 AGDLDETMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDE-- 435

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+ N  +K  +  I  SGQ
Sbjct: 436 --LQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPI-NAAHKYQLDIIISSGQ 492

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L++++LD  ++  G  ++  +A++L +  R  + +      +K I I  ++     
Sbjct: 493 RLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAP 552

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V AD + + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   ++ 
Sbjct: 553 VWVSADAQRLEQVLYNLIGNAIKYTSE-GKIVISATRV-DQHIRVQVVDTGQGIPAEQLE 610

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +     Q         QG GLGL I++ ++    G   + S+   G      LP     
Sbjct: 611 HIFEPLIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPMASDD 670

Query: 479 NFIPEDNHESTQYKC 493
                   +   ++ 
Sbjct: 671 EIAQAQLTQQPHFQA 685


>gi|237808038|ref|YP_002892478.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500299|gb|ACQ92892.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 845

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 164/327 (50%), Gaps = 13/327 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +    ++   L Y VF+ F  +     +++I    +    +   +           Y L 
Sbjct: 380 IGYLMIAGLGLFYMVFIFFIWLSSRSMSKSISEPLLHMKGMVDQIGREE-------YQLD 432

Query: 209 KSNVKILSCQAEKDDLIAELEVAKS---LSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           K   +I   Q     ++   +            ++ A+  N  K  FL+SMSHELRTPLN
Sbjct: 433 KPEFRIAELQGTASAIVNMGKKLDEITCALRRAKEDADSANKTKGLFLSSMSHELRTPLN 492

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF ++++ +    L+    K+YI +I  +G HLLNLI+++L+LS IE+    L    
Sbjct: 493 AILGFGQLLQKDD-NKLSVRDRKDYIDEIMTAGTHLLNLIDDVLNLSHIESKGSLLKIEP 551

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +  I +++EC  ML+  A ++ + +  ++  ++  V AD   +RQV++NLLSNA+K+  +
Sbjct: 552 VDAIRVIKECNEMLRPMAVKEQLSLSAELPETMVLVMADSTRLRQVLINLLSNAIKYNYL 611

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+++V+      +   IS++D+G GI+  +   + T F +      S  +G G+GL I+
Sbjct: 612 NGKINVSAEI-KDKYLRISVRDSGRGISPEKQTELFTPFNRLGH-ETSGIKGTGIGLSIS 669

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + ++ +  G+    S+ ++G      L
Sbjct: 670 KQLIESMNGRIGFSSQWQKGSVFWIDL 696


>gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CIAT 652]
          Length = 1257

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 999  RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1058

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1059 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1118

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1119 ANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1178

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1179 LRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSA 1238

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1239 PNEGTLVEITFPSQRVL 1255


>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 948

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
 gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
          Length = 1360

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 788  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 847

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 848  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 903

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 904  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 963

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 964  VHKIVNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1023

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1024 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1082

Query: 483  EDN--HESTQYK 492
            E+    E++  K
Sbjct: 1083 EEIIGTEASDVK 1094


>gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1066

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 28/270 (10%)

Query: 225 IAELEVAKSLSDETRKRAEEE------------------NLAKSRFLASMSHELRTPLNA 266
           I   + A++  +  R+  E                    N AKS FLA+MSHE+RTP+NA
Sbjct: 649 ITVRKQAEAELEHYRQHLETLVQSRTVELARAKDAAEAANRAKSSFLANMSHEIRTPMNA 708

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G + +++ + +        +E +G I  S  HLLN+IN+ILDLS+IEAGR  L     
Sbjct: 709 IMGLTHLLQKDVLDS----RARERLGKIGESANHLLNVINDILDLSKIEAGRLALEIREF 764

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385
           S   ++R+ I ML  RA  + + +   +   + ++   D   + Q +LN + NA+KF+  
Sbjct: 765 SPEAVLRQTISMLDERAAAQGLRLTSHLASDVPALLCGDAVRIGQALLNFVGNAIKFSER 824

Query: 386 GGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G + +        G        ++D G G+  G+   +  SF Q   +      G GLG
Sbjct: 825 -GEIALRARVDRRDGEQVMLRFEVQDQGIGMDAGQQARLFQSFSQADDSTTRKYGGTGLG 883

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I + +    GG   + S L  G      
Sbjct: 884 LAINRHLARMMGGDVGVDSALGVGSTFWMT 913


>gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 385

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 128/309 (41%), Gaps = 16/309 (5%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
            P   A+     ++                  ++Y       +  ++     E       
Sbjct: 92  VPAATAIVDWLELAGEGNHYFQLESTL-----YSYAQESYSSAIYELTLTTVEFKKTRYL 146

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           + VA+ +S+  +      +  K   ++++SHE+ TPL A+LGF E +       +  E  
Sbjct: 147 VCVAQDISERKK-----LDQMKDEMISAVSHEMSTPLTAMLGFCEFMLEN---EVPAEQQ 198

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E++  I +  Q L  LI+ +L L R+ AG   ++ + ++L  +  E   +    +    
Sbjct: 199 QEFLQIIFKESQRLKGLIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATH- 257

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
             I          V AD+  ++Q + NL+SNA+K++  GG V VT          +S+KD
Sbjct: 258 -TIKVDCPTDFPLVSADQLCLQQAMENLISNAIKYSPNGGTVTVTA-RQDDGQVIVSVKD 315

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+      +   F +          G GLGLP+ + I++ H G+  + S+  +G  
Sbjct: 316 EGMGISPVVQEQIFDRFFRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWVESEEGQGST 375

Query: 468 VIAILPNTR 476
               LP  R
Sbjct: 376 FCFSLPLER 384


>gi|284048185|ref|YP_003398524.1| integral membrane sensor signal transduction histidine kinase
           [Acidaminococcus fermentans DSM 20731]
 gi|283952406|gb|ADB47209.1| integral membrane sensor signal transduction histidine kinase
           [Acidaminococcus fermentans DSM 20731]
          Length = 549

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 152/333 (45%), Gaps = 15/333 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           + L   +   F  V++       M   ++ +  +        +   +           + 
Sbjct: 207 YTLIVGIIALFVSVIIVSGLTRRMVKPLISMKNSAKAIALGDYSLKVA----------VD 256

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E  DL   L       ++   ++++    +  F+A++SHELRTP+  I G++E +  
Sbjct: 257 GDDEIADLGRSLNSLGRDLEQFVLKSQKMEKMRRDFVANVSHELRTPITIIQGYNEALSD 316

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
            T+   + E  K+Y   I+   + L  LINE+LD+SR++ G  E     I L  +V   +
Sbjct: 317 GTIT--DPEDVKKYRKLINDETRRLERLINELLDISRLQRGEGE-EMEPIPLGKVVESVV 373

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ML+ RA++++I + Q +D SL  V+ +   + Q+++ L  NA+K++     +   V   
Sbjct: 374 NMLEGRAKKRDIRLEQYVDDSLL-VYGNGDRLYQLVMILGDNAMKYSPDSSVIRFQVMEN 432

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +G  +++ D G GI E +IP +   F +   +      G GLGL I + I+  H  + 
Sbjct: 433 GRKGTVLTVADQGFGIPEEDIPYIWERFYKADKSHSRHIPGTGLGLAIGKEIIRMHKAKV 492

Query: 457 LIRSKLREGVEVIAILPNTRVLNFI-PEDNHES 488
            ++SK+ +G   +   P     + + P+  HE+
Sbjct: 493 QVQSKVGKGTAFVITFPPYAPQSKVDPDGAHEA 525


>gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 948

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CNPAF512]
          Length = 1262

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1004 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1063

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1064 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1123

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1124 ANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1183

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1184 LRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSA 1243

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1244 PNEGTLVEITFPSQRVL 1260


>gi|291298578|ref|YP_003509856.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
 gi|290567798|gb|ADD40763.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
          Length = 1458

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 173/422 (40%), Gaps = 26/422 (6%)

Query: 93   VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                +  +G+    R  + +  I  G       L E        + +      L  +  +
Sbjct: 876  YAPGEGLVGQAAASRRPIRISDIPDGYLTIRSGLGEATPVDLVIMPVQFEGQQLGVMEFA 935

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +   F   +  FL      +  +   I++    ++ L           T  +  L ++N 
Sbjct: 936  SFRPFSPLHVSFLESLVANIGTALNNIVANGRTEVLLTESRRLTT-ELTQQSNELQRAND 994

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLN 265
            ++     + ++   E+E+     +  R    ++AE+    +  KS+FLA++SHELRTP  
Sbjct: 995  ELEEQARQLENRNREIEIKNRDVENARLGLEEKAEQLAQASRYKSQFLANISHELRTP-L 1053

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
              L     +  E      +    ++   IH +G  LL LI++ILDLS+IEAGR ++    
Sbjct: 1054 NSLLLLARLLAENTEQNLSPKQIDFARTIHSAGSDLLTLIDDILDLSKIEAGRMDVDPHE 1113

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTA 384
            +S  ++        + +A++KN++   +++  L  V+  D + ++QV+ N LSNAVKFT 
Sbjct: 1114 VSFTELCGRAEATFRPQAEDKNLQFSVELEDGLPDVFVTDSQKLQQVLRNFLSNAVKFTD 1173

Query: 385  IGGRVHVTVGWTS-------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
              G V + VG T                  Y ++ D G GI++ ++  +   F Q     
Sbjct: 1174 S-GSVTLKVGRTDPSYSFGISSLDGSDASYYFTVADTGIGISDDKMQMIFEPFQQADGGT 1232

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHEST 489
                 G GLGL I++S     GG  ++ +    G      +P         +P      +
Sbjct: 1233 SRKYGGTGLGLSISKSYADLLGGAIVVDTSPGRGSTFTLYVPDALNPKEPSLPTYTPLPS 1292

Query: 490  QY 491
            ++
Sbjct: 1293 EH 1294


>gi|269926551|ref|YP_003323174.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790211|gb|ACZ42352.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 486

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEK 221
           +      +++     A +S  VL   LA       S     T  +   ++   L      
Sbjct: 161 ILARLKTILILGGAIASVSAGVLAYFLAWQALRPFSRIVEDTRKIGVDDLSKRLPADYGV 220

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            ++        SL +    R E+   ++ RF+A  SHELRTPL  I G +EV+    M P
Sbjct: 221 LEVNRLARTFNSLLN----RLEKAFESQKRFVADASHELRTPLTTIRGNAEVML---MDP 273

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                 +E + +I      L  L++ +L L+R +AG+  L+   ++L D+V + +  +  
Sbjct: 274 NLPPDVREGLENIRGEVSRLSRLVSNLLMLARADAGQVNLTYRPVNLHDVVLDTLKQMHT 333

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
                ++ +          V  D   ++QV+LNLL NA K+T  GG V+V+V        
Sbjct: 334 SIDGLSVRLE---REDQVMVSGDADQLKQVMLNLLDNAFKYTPKGGSVYVSVYAEPP-WA 389

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + I+D G GIA  E+  +   F + S A K A  G GLGL IAQ ++  H G+  + SK
Sbjct: 390 KVEIRDTGIGIAPSELTRIFERFYRSSKAPKGA--GSGLGLSIAQWVVRAHNGRITVSSK 447

Query: 462 LREGVEVIAILPNTRVLNF--IPEDNHESTQYKCYA 495
             EG      LP     +     E+ H S Q +  A
Sbjct: 448 QGEGSTFTVWLPLFEGDSTYNREEERHSSAQTQSLA 483


>gi|170732652|ref|YP_001764599.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
 gi|169815894|gb|ACA90477.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
          Length = 1220

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I  L+ A   +   R  AE  N AK  FLA 
Sbjct: 796  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIDALKRALGTAQSARDEAERANTAKDNFLAL 855

Query: 256  MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR+PLN I G++ V+    E     + E  +  +  I R  Q    LI+++LD+SR
Sbjct: 856  VSHELRSPLNVISGWAAVLMTARERGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSR 915

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L    +     VR  +   +  A++K I +        + V  D + ++QV  
Sbjct: 916  ISSGRFSLDTKPVDFAAAVRTVVESNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVAS 975

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NLL NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q  I    
Sbjct: 976  NLLGNALKFTPDGGRVEVALTQL-GTLVELSVTDNGIGVKAELLPRLFDRFMQSDITRTR 1034

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
               G+GLGL I + +++ HGG     S+    G  +   LP 
Sbjct: 1035 NYGGLGLGLSIVKHLVSAHGGTVTASSEGEGRGTRLTVRLPL 1076


>gi|116490222|ref|YP_809766.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
 gi|116090947|gb|ABJ56101.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
          Length = 633

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ + EN  K+ F++++SHELRTPL ++  + E ++   +     +  +E++G  H   Q
Sbjct: 384 RQLKLENDQKN-FVSNVSHELRTPLTSVNSYIETLQEGALT--QKKIAREFLGVAHDETQ 440

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI----- 354
            ++++IN++L+LSR++ GR ++   A++    +   +    +  ++ +            
Sbjct: 441 RMIHMINDLLELSRMDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIR 500

Query: 355 ---DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                    V  D     QV+ N+++NA+ ++  GG + + +  T      +SIKD+G G
Sbjct: 501 NYDQKKSCYVEIDSDKFMQVVDNVINNAINYSPDGGNIEIGINET-DDSIILSIKDHGLG 559

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I + ++  V T F +   +    + G GLGL I++ ++    G+  + S +  G      
Sbjct: 560 IPKKDLENVFTRFYRVDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFIS 619

Query: 472 LPN 474
           LP 
Sbjct: 620 LPK 622


>gi|152988773|ref|YP_001347467.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
 gi|150963931|gb|ABR85956.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 10/269 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A+E N AKS FLA+MSHE+RTP+NA++G  E++    + P   
Sbjct: 174 ITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQR-LTPGQP 232

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  +   + +   L  LI +ILD+++IE+G   L+   + L ++V     M +  A+
Sbjct: 233 E--RASLEVAYEAAGSLQLLIGDILDVAKIESGHLILTPERVRLREVVESVRRMFEGLAR 290

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++  +    V  D    +QV+ NL+SNA+KFT   G+V + +   +      
Sbjct: 291 QKGLRLGVELGDTPGCDVLIDPLRFKQVLSNLVSNAIKFTEQ-GQVTIRLQEKNLDEGRA 349

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 350 VVRLAVEDTGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDIEMH 408

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S+  +G  V   L   R     PE  HES
Sbjct: 409 SEPGKGTLVSLDLLLRRCGAKTPEPGHES 437


>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
 gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 873

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 8/237 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE EN AKS FLA MSHE+RTP+N +LG +  +    +    +   ++ +  I  SG 
Sbjct: 363 EQAEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL----DPEQQQAVTTIRDSGD 418

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL ++N+ILDLS++EAGR E  ++  S   +V     +++   + K IE+   IDP L 
Sbjct: 419 DLLRILNDILDLSKLEAGRLEFEQADFSPTTLVESVRAIIEPEVRGKGIELKVDIDPRLP 478

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEG 415
             +  D   +RQV+LNL +NAVKFT  G   + +T    +     +   + D G GI+  
Sbjct: 479 PSLNGDAARIRQVLLNLAANAVKFTEQGSIAIVLTCVKRNDSHATVEWQVTDTGIGISPD 538

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + ++ T F Q  ++I     G GLGL I++ I+   GG   + S+  EG      L
Sbjct: 539 RVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGEGSTFRFSL 595



 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 60/193 (31%), Gaps = 6/193 (3%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQN----PIFPMWSLITLAVYAANLSLG 90
           R I    + S+ R++P+     +  A +  +   +    P    W+ + +    + +   
Sbjct: 46  RRIRAAQINSVTRLTPVTMSINVANAALILFTFWDNDARPQLLAWTAMIVFAAGSAVQSW 105

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +    + ++         + +  + +GL W  + ++      P    I       + +S
Sbjct: 106 LR-NRFEPRLEASAHAIRRMTLHALLLGLIWGAMPVMVFVKADPGDQLIVACVAAGM-IS 163

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
             A +   +P A     + +    +    +   +     A  L     F +       + 
Sbjct: 164 GGAFTLSTVPRAGLAYTWSLAAGSALSLALCDGMAYRITAAFLVLYAVFMSRNLISHGEM 223

Query: 211 NVKILSCQAEKDD 223
               L  + E + 
Sbjct: 224 FFDNLRAKFELER 236


>gi|323464229|gb|ADX76382.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           pseudintermedius ED99]
          Length = 566

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+A++SHEL+TP+ ++ GF+E +        +  +   ++  I +    + +L+ ++
Sbjct: 346 RSEFVANVSHELKTPITSMKGFTETLIDGA--KNDEASLDLFLNIILKESNRIQSLVEDL 403

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS+IE     L +  I L D+ +    ++Q  A EK+I++  +I+P++ +  ADE  +
Sbjct: 404 LDLSKIEQNT-TLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNV-TAMADENKI 461

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI+NL++NAV ++     V + V     +   I + D G GI E E   +   F +  
Sbjct: 462 SQVIVNLMTNAVNYSPENRTVTLAVYR-ENQHPVIEVIDQGIGIGEKEKYRIFERFYRVD 520

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A      G GLGL I + I+  + G   + S+L +G     +LP
Sbjct: 521 KARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 482

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 144/322 (44%), Gaps = 17/322 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-------KSNVKILSCQAEKDDLIA 226
           L T  + S+ ++   L  +   +      I   +        +        + E D    
Sbjct: 167 LFTITLFSVGIMAAVLIIVFVVSTGLANSIVRPINNIRDVSAQMAQGKFDARIEGDYRYE 226

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             E+A +L+   ++     N  K  F++S+SHELRTPL +I G+SE +      P   E 
Sbjct: 227 LGELASTLNYMAQEIV-RTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP---EE 282

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K  +  I +    L+ L+ EILD S++E    +L    + L ++++E ++ +  +A+ K
Sbjct: 283 TKIGMKIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 342

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I++    + +   V  D   ++QV LN++ NA+KF+     + +++         IS++
Sbjct: 343 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIFLSLQRI-DGNIEISVQ 401

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+   +  V   F Q          G GLGL I+Q  +  H GQ LIRS+L  G 
Sbjct: 402 DTGIGISAENLARVRDRFFQVDH----QNGGTGLGLAISQQFIERHHGQMLIRSELGAGT 457

Query: 467 EVIAILPNTRVLNFI-PEDNHE 487
            +   LP  +    + P    E
Sbjct: 458 TITVSLPALQAEQSVEPSQLTE 479


>gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
 gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +  + AEE N  K+ F+A+M+HE+RTPLNAI+GF+ V+       L+ E    ++ +I
Sbjct: 52  LQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAET--DNLSREERMIFLKEI 109

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + +   L+ +IN++LD S+IEA   E  +  + +  +++E         +   I+I    
Sbjct: 110 NDNKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQIEFVE 169

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 +  D     QVI NL+ NA+KFT   G V +     S    Y  + D G GI E
Sbjct: 170 KLPQCRLMIDRVRFAQVINNLVKNALKFTEQ-GSVKIGYRRLSNNNFYFYVADTGCGIDE 228

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG      LP 
Sbjct: 229 ESRRAIFERFVK----MNYNIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093]
 gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093]
          Length = 379

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 155/369 (42%), Gaps = 6/369 (1%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           +                +         +    +   L+  +   L    L   V +    
Sbjct: 1   MTWQGALAAALEVSFDALAALEG-GRVVAANGALGALVGCAPHELWGRALGSLVRVEPPA 59

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL- 228
               L         +                 +  +      V++++ +       A+  
Sbjct: 60  EGGVLEALRRAPQPLEGTLTLWGGKELPVELLWRPWRFQGRPVELVAVRGVSLATSAQSA 119

Query: 229 -EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               ++  +      E  N  +  FL  +SHELRTPL +++G+++V+  E +GPL N+  
Sbjct: 120 LRRYQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPL-NDKQ 178

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + Y   I+ SG  L+ LI+++LDLSR+EAG   L    +++ +++R  +  +   A+ K 
Sbjct: 179 RAYAETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKG 238

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +  +  P  ++++ D   + QV+  LLSNAVKFT +GGRV V+          + ++D
Sbjct: 239 LSVTLQPPPE-AALYGDPARLAQVLGALLSNAVKFTPLGGRVWVSAELRES-EVVLMVRD 296

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GIA      V + F     +     +G GLGL +A+ I+  HGG+  + S+L  G  
Sbjct: 297 DGIGIAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVASELGRGST 356

Query: 468 VIAILPNTR 476
               LP   
Sbjct: 357 FYVALPRAP 365


>gi|296159891|ref|ZP_06842712.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295889874|gb|EFG69671.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 1174

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 9/361 (2%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
           TL    T  P  L + + A LLIA+         + +   +   P +       ++  ++
Sbjct: 594 TLFPRLTLGPAGLRLAQYAGLLIAVVTLLGGVLAVQWYQSVRTLPNLDTTVHDVLLQGYL 653

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243
                  ++    +++  +     K   +    QAE     I       +        AE
Sbjct: 654 KAFFALALVGCIAAWWLVLANENRKVTQEESQRQAELLMQEIEAHRKTDAALQRASAAAE 713

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKSR++  +SHELRTPLN+ILG+++++             +  +  I+RSG+HLL 
Sbjct: 714 SANRAKSRYVTGLSHELRTPLNSILGYAQLLLQG--TDELPPARRNAVATIYRSGEHLLA 771

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           L++ +LD++RIEAG+ +L+ + ISL D V +   ML+ +A +K ++   +    ++  V 
Sbjct: 772 LVDGLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVR 831

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DEK +RQ+++NL+ NA++FT   G V V   + +       I D GPG+   E+  +  
Sbjct: 832 IDEKRVRQILINLIGNAIRFT-SHGSVKVRASY-AWEAITFEIADTGPGMPASELERLFL 889

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNF 480
            F +G+ A +    G GLGL I + +    GG   ++S++ +G   I  L  P  R    
Sbjct: 890 PFERGAAAREHDH-GAGLGLTICRLLTELMGGNLEVQSEVGKGTRFIVKLFAPEVRAPQL 948

Query: 481 I 481
           +
Sbjct: 949 L 949


>gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1057

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 24/370 (6%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L+ P T     + I +   +   L+  +    +L          +  AL    ++++   
Sbjct: 222 LLAPVTADGRVIGIIELGRVTDPLTAGSREEELLARCGENIGLALRTALLRAQLVTLLEE 281

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE- 244
               +  L T           L + +  +   Q++ +   AELE      +E  +  E  
Sbjct: 282 TQRQSEELQTQQEELRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQ 341

Query: 245 --------------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                                +  KS FLA+MSHELRTPLN+ L  ++++     G L+ 
Sbjct: 342 RQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLST 401

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  S   LL LIN+ILDLS+IEAG  EL++  ++   +++      +  A+
Sbjct: 402 EQVK-YAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLAR 460

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K + +         + +  D + ++Q++ NLL+NA+KFT   G+V ++V   +      
Sbjct: 461 QKGLALEIAAVADTPTQLVVDNQRLQQILKNLLANAIKFT-EHGKVSLSVQAHAPGRVRF 519

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GIA  +   +  +F Q   + +    G GLGL I++ +    GG   + S+  
Sbjct: 520 AVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPG 579

Query: 464 EGVEVIAILP 473
            G      LP
Sbjct: 580 RGSCFTLELP 589


>gi|266623520|ref|ZP_06116455.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
 gi|288864691|gb|EFC96989.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
          Length = 462

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 157/340 (46%), Gaps = 16/340 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLS-----FFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +L    +S  S+++L  AV  +        ++ A+    ++++     S     A+    
Sbjct: 127 MLYVACVSDHSDYILRMAVPFTGFKEYLVLLLPAIWLSFLVAIMYSACSADSFAASVTKP 186

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA------KSRFL 253
              I+  + K N        E         +A++ ++ ++   E  N        +  F 
Sbjct: 187 LKEISQEMLKVNGDYTELTFETYQYPEINIIAETTTEMSKNVKEYLNQIELERQIRQEFF 246

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           ++ SHEL+TP+ ++ G++E++E   +   + +   +++  I +   H+ +LIN+IL +SR
Sbjct: 247 SNASHELKTPITSVQGYAELLESGII--QDEDQKMDFVRRIKKEAVHMTSLINDILMISR 304

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E    E+    + +  ++ + +  L+  A    + +  +  P    ++A+ + M +++ 
Sbjct: 305 LETKEAEVVCQDVRMAIVLDDVLESLKPLAAFHEVLVHAECKP--LCIYANARQMTELLG 362

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA+K+   GG V VT+     R   I ++DNG GI +  +  +   F +       
Sbjct: 363 NLLSNAIKYNKPGGEVWVTIT-EENREMIIRVRDNGMGIPKESLGRIFERFYRVDKGRSR 421

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            + G GLGL I + I++ + G   ++S+L  G E    +P
Sbjct: 422 KQGGTGLGLSIVKHIVSFYHGTIAVQSELEAGTEFTVKIP 461


>gi|119494078|ref|ZP_01624621.1| Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452180|gb|EAW33383.1| Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1139

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 29/278 (10%)

Query: 226 AELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S +++ + +G L 
Sbjct: 342 EITEQHRIAQELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQALGSL- 400

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML---- 339
           N+    Y   IH+SG+HL+ ++N+ILDL+R+E G+ EL    + +  I +    +     
Sbjct: 401 NDRQARYAKLIHQSGRHLMMVVNDILDLTRMETGQLELIPEPVQIRAICQRAFEIAGQHH 460

Query: 340 ---------------------QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
                                     +        I+PSL ++ ADE  +RQ+++NLLSN
Sbjct: 461 SNADNNSKSSSSTQKNASDSPSPNPPKPQERFILDIEPSLETIVADELRLRQMLVNLLSN 520

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT    ++ + V +        +I D G GI E +   +   F Q    +    +G 
Sbjct: 521 ALKFTPDDSQIGLQVSYWE-NWIGFTIWDKGIGIPEDKQHLIFQKFQQLESPLTRKFEGT 579

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGL + Q +   HGG     SK  +G +   +LP + 
Sbjct: 580 GLGLVLTQRLARLHGGDVSFISKQDQGSQFTLLLPPSP 617


>gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 645

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 6/254 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     A +      + AE+ +LAKS FLA+MSHE+RTPLN I+  ++++    + P   
Sbjct: 240 VTAQRAAATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSELTP--- 296

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +  I  SG+ L  L++E+LDL RIEAG+  +      L D+ R    +  L A 
Sbjct: 297 -RVRELVDIIQTSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHAG 355

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK + +  +I P+   +V  D   +RQV+ NL+SNAVKFT   G+V V V   +     I
Sbjct: 356 EKGVALETRIAPAADIAVIGDGARVRQVLTNLVSNAVKFTDQ-GQVAVEVDLGADGQTRI 414

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G G    E   +   F Q   +      G GLGL I++ ++   GG     S+  
Sbjct: 415 SVRDTGVGFDPAEKARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRPG 474

Query: 464 EGVEVIAILPNTRV 477
            G      LP   V
Sbjct: 475 AGSTFWFDLPLAAV 488


>gi|282899889|ref|ZP_06307850.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195159|gb|EFA70095.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 638

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 10/236 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  + E +       L  +  +E++  ++     L  
Sbjct: 390 ELNEAKSQFISNISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTR 448

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR       + L   + + +   QL A+EK I + Q++ P+L  V  
Sbjct: 449 LVNDVLDLSKLESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELTPNLPLVIG 507

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------GRGQYISIKDNGPGIAEGE 416
           +   + QV  NL+ NA+KFT  GG V +                  I I D G GIA  +
Sbjct: 508 NYDLLLQVFGNLIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPED 567

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   F +         +G GLGL I ++IM  H  Q  + S++  G      L
Sbjct: 568 QQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIMERHHSQVHLVSEVGVGTTFWFDL 622


>gi|302874728|ref|YP_003843361.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690658|ref|ZP_07633104.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577585|gb|ADL51597.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 568

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +F+A++SHEL+TPL +I GF+E +         ++  ++++  I+     L +LIN+IL 
Sbjct: 350 QFMANVSHELKTPLTSIKGFAETLR----YVKEDDKKEKFLNIINEEANRLTSLINDILT 405

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LS IE  + +L    I +  I+++  ++L+  A EK I++   I  +   V  ++   +Q
Sbjct: 406 LSDIETHKDKL-YEDIEVNAIIKDVFLLLKPIADEKEIQLTYDISDTTVIVSGEQNKFKQ 464

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +++NL+ NA+K++   G V V   +       I+++DNG GI    +  +   F +   A
Sbjct: 465 MLINLIDNAIKYSDRNGFVKVQC-FLKEDYVVITVEDNGIGIENICLNRIFERFYRVDEA 523

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A  G GLGL I + I+    G   + S++ +G + I  +P  
Sbjct: 524 RSRARGGTGLGLAIVKHIILEFKGTIDVESEIGKGTKFIVKVPKA 568


>gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 746

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 326 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 385

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 386 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 440

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 441 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELPYLPDELGVIADRQRLVQVLLNLLS 500

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++     +S+ D G GIA   +  +   F +       + +G
Sbjct: 501 NAIKYNRPDGQVRIEVDRSAEH-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 557

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 558 TGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALPFVAVHAPT 601


>gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 1182

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A     AKS+FLA+MSHE+RTPL AI+G+ E +    +        +     + RSG+HL
Sbjct: 559 ARNSAQAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLNET---EKRSSAETVVRSGRHL 615

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360
           L L+N+ILD S+I+A + ++    ++L +++ E       RA+EK ++     D  L   
Sbjct: 616 LELVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAFFAPRAREKGLDFSIICDYPLPEK 675

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPT 419
           +  D    RQ+I+NL  NA+KFT   G + + +    G    Y  + D G G+   ++  
Sbjct: 676 IRTDPTRYRQIIINLCGNALKFT-ENGSISLIIRCDRGAEKLYARVVDTGIGMKPEQLDR 734

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F QGS AI     G GLGL I++ +    GG   + S   EG E    +
Sbjct: 735 LFDPFAQGSTAISRQYGGTGLGLSISRRLAELLGGDIRVSSTYGEGSEFEVCI 787


>gi|42524251|ref|NP_969631.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576459|emb|CAE80624.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 557

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 145/295 (49%), Gaps = 12/295 (4%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHE 259
           Y       ++ +    +A  D +   +E   + +D  ++  E  E N +K  FL ++SHE
Sbjct: 133 YWKDQRLPTDEQRELLRALADSVSVSIENLNNYNDLQKRIEELKEANRSKDEFLMTVSHE 192

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN+I+G++E++   + G   ++  +  +  I R+ ++   +I ++LD SRI  GR+
Sbjct: 193 LRTPLNSIMGWAEILLEASPG---DKDARLGLETIERNARNQTRIIEDLLDSSRILLGRF 249

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            + +  + L+D+V + +  ++L A +K I I      + + +  D + ++Q++ NLL NA
Sbjct: 250 HMEKKPVDLVDVVTQAVDAVRLMADKKEIHIEIAKGVTTAMIQGDFERLKQIVNNLLINA 309

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KF+    R+ V V    G    +S+KD G G+    IP     F Q   +      G+G
Sbjct: 310 IKFSHAQSRIEVAVLRQ-GPSFTVSVKDEGVGMDAEFIPRAFERFRQADGSTTRKFGGLG 368

Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN-----TRVLNFIPEDNHES 488
           LGL I++ ++  H G  +  S  L +G E    +P        V   +P     +
Sbjct: 369 LGLSISRHLVEAHQGTIVAHSAGLGKGSEFSFSIPALSKQGEIVKEPVPAPPQRN 423


>gi|291541195|emb|CBL14306.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 716

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 135/276 (48%), Gaps = 13/276 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +  L AE E+      +  ++A   N AKS FL+ MSH++RTPLN I+G   + E     
Sbjct: 316 RAHLQAEREI---QLKDALEKANRANAAKSDFLSRMSHDIRTPLNGIIGCLTIAEANKNN 372

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   +  ++   ++  +  HLL LI++IL++S++E  + EL+ +A  +  +  + + + +
Sbjct: 373 PELLDQNRK---NMRVAANHLLTLIDDILNMSKLEDNKVELAHTAFDVRHLGNDILTITE 429

Query: 341 LRAQEKNIEIFQKIDP---SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           + A+E NI +             V+     +RQ+ +N+L+NAVK+   GG ++V +   +
Sbjct: 430 MLAKENNITLHLDSSSYNLPHPYVYGSTLHVRQIFVNILNNAVKYNKPGGEIYVKLESGA 489

Query: 398 GRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              + IS    I+D G G++   +  +   F Q  +  +S  QG GLG+ I +S++    
Sbjct: 490 CDEKNISYICTIQDTGIGMSPEFMSHLFDPFSQEKVDARSVFQGTGLGMSIVKSLVDKMN 549

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G   ++S+   G      +P          +  + +
Sbjct: 550 GTIEVKSEQNVGTTFTVTIPFEIAPQEAVSEVTDDS 585


>gi|119476572|ref|XP_001259199.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
 gi|119407353|gb|EAW17302.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
          Length = 2285

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 38/297 (12%)

Query: 226  AELEVAKSLSDETRKRAEEENLAK-----------------SRFLASMSHELRTPLNAIL 268
            + +E  K    E     ++ N+AK                 S FLA++SHELRTPLN ++
Sbjct: 1845 SMVEAQKKALAEAMAAEQKANVAKAEALHHAKLAEEAAKAKSSFLANISHELRTPLNGVI 1904

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G SE++    +     E   E    I  S   LL +IN+ILD S++EA + +L      +
Sbjct: 1905 GNSELLLNSPV----PEAQLEMAESIRMSANLLLAVINDILDFSKVEANKMQLHVVPFDV 1960

Query: 329  IDIVRECIIML------QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              +V E +  +        R+   +I    ++  +   V  D   +RQ++ NLL N++KF
Sbjct: 1961 ERMVMEVVRSIPTDSKNGPRSSNVHIVHDIQLQETR-HVCGDPVRLRQILGNLLGNSLKF 2019

Query: 383  TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            T   G + +     +           + D G GI    IP +   F Q   +      G 
Sbjct: 2020 TEK-GTITIGARAENETEDSVRLSFWVADTGIGIPSALIPRLFRPFTQADASTARRFGGT 2078

Query: 439  GLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNF---IPEDNHESTQ 490
            GLGL I + ++   GG   ++S    G        LP     +     P  + +S+Q
Sbjct: 2079 GLGLSICKLLVELMGGTIDLKSTEHVGTTVSFAVTLPKAIPGDSGRTTPTRSSDSSQ 2135


>gi|118589310|ref|ZP_01546716.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614]
 gi|118438010|gb|EAV44645.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614]
          Length = 451

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 153/467 (32%), Gaps = 34/467 (7%)

Query: 28  PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANL 87
           P     +          L R+     + +   A I      + +     L+ +A      
Sbjct: 4   PPSPIEEPAEDRQAASPLTRLGEARWILLFAFAAITGAVVLHEVPLTTGLLVMAAMVVVA 63

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
               +  +S             +  G         L T             + K A  + 
Sbjct: 64  CFVPRKSSSRRVKLNAQREIRRMWPGTGMKVTVDALPTPCFVADGRGITRYVNKPALSIY 123

Query: 148 -----ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
                   +S           F        A     I  +       A +    +     
Sbjct: 124 EGVKPGDPLSFSLRAPSLLEAFDRVCATGEAEKISWIEKVPTETWYEAHISPIYMPGSGV 183

Query: 203 ITY--HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 L    + ++    E   L                        ++ F+A+ SHEL
Sbjct: 184 QEKVPKLPDFILVVIQDLTENRRL---------------------ERMRTDFVANASHEL 222

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL ++ GF E ++       + +    ++  +      +  LI++IL LSRIE   + 
Sbjct: 223 RTPLASLTGFIETLQ--GPARNDPDARDRFLSIMLDQAGRMRRLIDDILSLSRIELKAHV 280

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
              + + L +IVR     L   A +  +EI  ++  +   +  D   + QV  NL+ NA+
Sbjct: 281 RPANEVDLSEIVRHTADALSPLASDMGVEIRLQLPETPVRIKGDRDELIQVTENLIENAL 340

Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           K+   G  V V +   +         +S++D G GI    +P +   F +  +    A +
Sbjct: 341 KYGHDGKFVDVGLSKPAAPQDALSWQLSVRDYGEGIPREHLPRLTERFYRVDVESSRAMK 400

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           G GLGL I + I+  H G+  + S+  +G      LP T     +PE
Sbjct: 401 GTGLGLAIVKHILTRHRGRLEVESEPGQGATFKVSLPATENAEGLPE 447


>gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 784

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 154/343 (44%), Gaps = 15/343 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-------LFKSNVKI 214
            V L    +++ +       +  +    A +   AL     +          L +    +
Sbjct: 163 VVMLGTLGLLLIVRVALSRHLETMADYAAKLNLDALVEPLKLRRRNPSRPDELSELEQAL 222

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              + +  +    L      +   R  A   N AK++FLA++SHELR PL ++LG++ ++
Sbjct: 223 NKMRLQILEDTRSLRQTTIQTQGERDEAIRANHAKNQFLANVSHELRIPLQSVLGYANLL 282

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    ++  +EY+  +  + + L ++IN++LD+S +EAG+ EL      L + + +
Sbjct: 283 TDTPL----DQEQREYVNTLLNASESLSSIINDLLDISSMEAGKLELEAIPFDLRETLND 338

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVT 392
            I ML  RA+EK + +  ++D +L   +  D   +RQV+LNLLSNA+KFT  G   + + 
Sbjct: 339 LIHMLGSRAREKGLALEVRVDENLPWALTGDPVRIRQVLLNLLSNAIKFTDSGHVLISIE 398

Query: 393 VGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +         +   ++D G GI   +IP V   + Q     +    G GLGL I + ++ 
Sbjct: 399 ILGRKEGKVRLRLAVEDTGVGINPEDIPLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVD 458

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             GG   + S+  EG      L      +   +   +S Q + 
Sbjct: 459 LMGGSMDLESRPGEGSTFWVELSLQEATDGSAKVRPDSRQVQG 501


>gi|229180990|ref|ZP_04308325.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
 gi|228602547|gb|EEK60033.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
          Length = 484

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVRLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 7/241 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +E  ++A+  +  KS FLA+MSHE+RTPLNAI+GFS ++       L+ +   E+   I
Sbjct: 261 LNEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGDAD-LSRQEIMEFTSLI 319

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            ++ Q L+ LI++ILDLS+IE+   E     +SL  I+       ++  ++  +E+   +
Sbjct: 320 EKNSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGILESIYSAQKMNLRK-GVELLLDL 378

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
               + ++ D   + QV+ NL++NAVKFTA  GR+ +           + ++D G G++E
Sbjct: 379 PDRAAVIYTDPTRLGQVVNNLINNAVKFTAE-GRITIGYRLKDFATLEVFVEDTGTGMSE 437

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +   F +G        QG GLGL I ++I+    G+  + S L +G     +LP 
Sbjct: 438 EVLAHIFERFYKGDA----FVQGTGLGLAICRTIVERFHGKIEVASTLGKGSRFAIVLPQ 493

Query: 475 T 475
            
Sbjct: 494 E 494


>gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E  N+ K  F+A++SHELRTP+ AI G++E ++   +         + +  IHR  +
Sbjct: 217 RRLE--NVRK-DFVANVSHELRTPITAIRGYAETLQTGALQDPTVAP--KMVEIIHRQSE 271

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L+ ++L+LSR+E+   +L  + +SL          ++ +A+ KNI +   +   L 
Sbjct: 272 RLSELVEDLLELSRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDL- 330

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
               DE+ + QV+LNLL NAVK+T  GGRV V  G        + +KD G GI    +  
Sbjct: 331 RARGDERAVEQVLLNLLDNAVKYTPAGGRVDVR-GTQENGRCVVRVKDTGVGIEPKHLSR 389

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +          G GLGL I + ++    G+  + S+   G   +  LP
Sbjct: 390 IFERFYRVDKGRSRDMGGTGLGLSIVKHLLGAMEGEVKVESQPNVGSVFVIFLP 443


>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
           furnissii NCTC 11218]
          Length = 1113

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 158/375 (42%), Gaps = 9/375 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 318 WALVVELPEKEAFARIRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVS 377

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETR 239
           +  + +  +       +         + +S  + +   +A+  +L + ++V +  +DE  
Sbjct: 378 AGDLDETMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDE-- 435

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+ N  +K  +  I  SGQ
Sbjct: 436 --LQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPI-NAAHKYQLDIIISSGQ 492

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L++++LD  ++  G  ++  +A++L +  R  + +      +K I I  ++     
Sbjct: 493 RLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAP 552

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V AD + + QV+ NL+ NA+K+T+  G++ ++      +   + + D G GI   ++ 
Sbjct: 553 VWVSADAQRLEQVLYNLIGNAIKYTSE-GKIVISATRV-DQHIRVQVVDTGQGIPAEQLE 610

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +     Q         QG GLGL I++ ++    G   + S+   G      LP     
Sbjct: 611 HIFEPLIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPMASDD 670

Query: 479 NFIPEDNHESTQYKC 493
                   +   ++ 
Sbjct: 671 EIAQAQLTQQPHFQA 685


>gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 1010

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 4/238 (1%)

Query: 239 RKRAE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
           ++ AE E +  K+ F A +SHELRTPL +I+G+ E++    +G +N+E  + ++G + R+
Sbjct: 749 KRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQAR-FLGIVERN 807

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L  L+ ++L ++++EAG   L     +L  IVR+ +   + RA++  + +  + +P 
Sbjct: 808 GKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETEP- 866

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           +  +  D   + Q++ NL+SNA+KFT  GG V VT+    G    +++ D G GI   E 
Sbjct: 867 VPPIRGDADRLGQLVDNLISNALKFTPSGGDVTVTL-RIDGDEVALAVADTGIGIPADEQ 925

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F + S A++    G+GLGL I Q+I   HGG+  + S++  G     +LP  
Sbjct: 926 ARLFDRFFRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLPLR 983


>gi|254245733|ref|ZP_04939054.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
 gi|124870509|gb|EAY62225.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
          Length = 1220

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I  L+ A   +   R  AE  N AK  FLA 
Sbjct: 796  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIDALKRALGTAQSARDEAERANTAKDNFLAL 855

Query: 256  MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR+PLN I G++ V+    E     + E  +  +  I R  Q    LI+++LD+SR
Sbjct: 856  VSHELRSPLNVISGWAAVLMTARERGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSR 915

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L    +     VR  +   +  A++K I +        + V  D + ++QV  
Sbjct: 916  ISSGRFSLDTKPVDFAAAVRTVVESNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVAS 975

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NLL NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q  I    
Sbjct: 976  NLLGNALKFTPDGGRVEVALTQL-GTLVELSVTDNGIGVKAELLPRLFDRFMQSDITRTR 1034

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
               G+GLGL I + +++ HGG     S+    G  +   LP 
Sbjct: 1035 NYGGLGLGLSIVKHLVSAHGGTVTASSEGEGRGTRLTVRLPL 1076


>gi|89893593|ref|YP_517080.1| hypothetical protein DSY0847 [Desulfitobacterium hafniense Y51]
 gi|89333041|dbj|BAE82636.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 462

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 144/354 (40%), Gaps = 20/354 (5%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
             T+  P          Y +   ++  +  +  + +    +F     +++ +      S 
Sbjct: 129 SFTISSPNGILAIADVRYPAKAKVLNPADQSFVSAIYQSLLFAGALALIIGILLSYWTSR 188

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +          + L   T     + + ++        KD++         ++D  +K+ 
Sbjct: 189 RL---------ISPLQNLTKAAQRVGEGHLDEHVSVMTKDEVGQLAIAFNGMADSLKKQ- 238

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                 + +F A ++HELRTPL +I  + E  +   +        KE +  I+   + L+
Sbjct: 239 ---EHLRKQFTADIAHELRTPLTSIRSYIEAFQDGVL-----PADKENLTIINEEIERLV 290

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L +++ DL+  E G  +L+ + + + +++ + +  L    QEK I    +   S+  + 
Sbjct: 291 GLSSDLKDLNVAEMGALKLNFTQVDITELIDKTVNKLIPLIQEKGIAFEWEKPASV-FIE 349

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + ++  NL+ NA KFT   GR+ + +         IS+ D+G GI + ++P +  
Sbjct: 350 GDEYHLTRLFYNLIHNAYKFTESNGRISIQMELRQSD-VRISVCDSGIGIPKEDLPFIFE 408

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   +      G G+GL + Q I   H G   + S   +G +   +LP   
Sbjct: 409 RFYRAEKSRSRETGGTGIGLALVQQITQLHRGTLDVESNPGQGSKFTVVLPCAP 462


>gi|229179502|ref|ZP_04306855.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
 gi|228604003|gb|EEK61471.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
          Length = 448

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|219847195|ref|YP_002461628.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541454|gb|ACL23192.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 391

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 150/392 (38%), Gaps = 22/392 (5%)

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
            W   L        L   L+  V           +  +    + L  +A     L     
Sbjct: 2   KWLHQLRWKLFVSHLIIVLMAYVVLLVTANVLANLGLTGFAPLTLGAAASETGQLGTDTV 61

Query: 165 LSFFPV-----------VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   +           ++     A+ +  V+ + ++  +   +   + ++  L +   +
Sbjct: 62  STTNALQEQFQSVVQQSLLISGFAALAAAVVVSLFVSRRIVEPIQTLSQVSRRLAQGFYR 121

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             +     D++    +    L+D      ++    +   LA ++HELRTPL  I G+ E 
Sbjct: 122 ERTIIYADDEIAQLAQSVNQLAD----ALDQTERRRLALLADVTHELRTPLATIGGYMEG 177

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +              I R  + L  LI ++  LSR+EAG+  +   AI L  ++ 
Sbjct: 178 LVDGVVSANPAT-----FNLILRETRRLQRLIEDLELLSRVEAGQLPVIARAIDLRPVIE 232

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E I   +       + +   +   +  VWAD   + QV++N+L NA ++T  GG V V V
Sbjct: 233 EQIAQFEPLFSSNQVNLILDMPEQVPQVWADPDRVAQVLINILVNACRYTPPGGSVTVQV 292

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    +++ D G GIA   +P V   F +   +      G G+GL IA+ ++   G
Sbjct: 293 -RVDDHEVRVAVIDTGIGIAAEHLPHVFERFYRVDKSRARNSGGSGIGLAIARHLIYAQG 351

Query: 454 GQFLIRSK-LREGVEVIAILPNTRVLNFIPED 484
           G+    S  L +G   I  LP    +  +P +
Sbjct: 352 GEIWAESDGLGKGARFIFTLPIAPQMATVPVE 383


>gi|148253661|ref|YP_001238246.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
 gi|146405834|gb|ABQ34340.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
          Length = 786

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 34/293 (11%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTP 263
           QAE +  +A +E  +S  ++  +  E                   KS FLA MSHE+RTP
Sbjct: 354 QAELEQKLAYVEAIRSDLEQQTQELEARGAELRAARDAAEAANRAKSDFLAIMSHEIRTP 413

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ ++G  +++     G   +E  K Y      S   LL +IN+ILD S++EAGR +   
Sbjct: 414 LSGMVGMVDLLR----GTSLSEEQKRYTALAKESADLLLEVINDILDFSKLEAGRLQSEC 469

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               + ++V   +  +  +A+ + +++   + P L   +  D   +RQV+LNL+ NA+KF
Sbjct: 470 IDFDVPNLVESAVSFMGEKARRRGLDLKVSLAPGLPQYLEGDPTRIRQVMLNLVGNAIKF 529

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G + V        G      I + D G G++   +  +   F Q   +I     G 
Sbjct: 530 TEQ-GSIEVRASHRQLDGGVVDLRIEVIDTGIGMSPEILAQIFDPFVQADTSISRKYGGS 588

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----------LPNTRVLNFI 481
           GLGL I + +    GG   + S+L  G                LP   V+  +
Sbjct: 589 GLGLAICRQLCTIMGGSIGVDSELGRGSRFWFETKCRCGEALALPAETVVASV 641


>gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 648

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 239 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 298

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 + Y + +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 299 ---EEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 355

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V +     
Sbjct: 356 QELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER-DD 414

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 415 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 474

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 475 TSGGRGKGATFTVRLP 490


>gi|332976205|gb|EGK13069.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 469

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 139/327 (42%), Gaps = 8/327 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           + +++          +F S   +++     A+     + + L+      +     +   L
Sbjct: 140 SGTVAVTMEMNWLSDLFRSLGSLILLAGVGALSIGGGMALLLSRRTVGPILEIRDVADRL 199

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + + +        D+L +  +    L+D      +    ++  FL+ ++HELRTPL+ +
Sbjct: 200 AQGDYRARVQVRGNDELASLGKQMNQLAD----SLDYYRSSRQEFLSDVAHELRTPLSYV 255

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+S  +++   G    E  ++ +  I      L  L+ +++ LSR++ G+ E+ +  IS
Sbjct: 256 KGYSAWLQMRDPG---EEKRRQLLTVIREQTGRLERLVEDLVTLSRLDEGKMEIEKKRIS 312

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +     +  L+ RA E  + +           + D     Q+++NLL NA++ +  GG
Sbjct: 313 PTERASRVLEELESRASEVGVILRFDSSYDGIFCF-DPVRFDQILINLLDNAIRHSESGG 371

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V V +    G G  I + D G G+   E+  +   F +   +      G GLGL I + 
Sbjct: 372 LVEVRLSPGLGGGIRIRVADQGVGMEPEELDRIWERFYRVEKSRARRYGGSGLGLSIVRR 431

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           ++  HGG   +RS+  +G   +   P 
Sbjct: 432 LVELHGGTIEVRSRSGDGTTFLMEFPK 458


>gi|237748150|ref|ZP_04578630.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379512|gb|EEO29603.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 1289

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 133/259 (51%), Gaps = 10/259 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + +++  + AK+ FL+ MSHE+RTP+NAI G +  I    +   + E   + +  I +S 
Sbjct: 902  KAKSDAVSQAKTDFLSRMSHEIRTPMNAIAGMT-TIARSALD--DREKVLDCLVKIEQSN 958

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
            ++LLNLIN++L +SRIE+G+ EL+   + L ++      M++ +   K +++  +   P+
Sbjct: 959  RYLLNLINDVLAMSRIESGKVELNPEPVLLEEVAISLDDMMRSQVTLKQLDLRFERHFPT 1018

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIA 413
               V+ D     QV +N++ NA+KFT  GG +         +        S+ D G GIA
Sbjct: 1019 GRPVYLDVLRFSQVFINIIGNAIKFTEPGGSIIAQSTLVDEKDGVAYIRFSVTDTGIGIA 1078

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               I  +  SF QGS     A  G GLGL I+ +++   GG   ++S+L EG E    LP
Sbjct: 1079 PEAIRRIFRSFEQGSKNTSMAYGGTGLGLAISSNLVRMMGGTLEVKSRLGEGSEFYFTLP 1138

Query: 474  N--TRVLNFIPEDNHESTQ 490
                 V + +P    E  Q
Sbjct: 1139 LPFASVSDVLPLKRSEKIQ 1157


>gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1162

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 35/279 (12%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   + A++     +  AE  NLAKS FLA+MSHE+RTPLN  LG  ++++  T+    +
Sbjct: 655 VTGRKEAEAALLREKGAAEAANLAKSEFLANMSHEIRTPLNGSLGMLQLLQTTTL----D 710

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++Y+     S + L  L++++LDLSR+EAGR  L  +  +L  +      +  L A+
Sbjct: 711 EEQQDYLTSAITSARRLTQLLSDVLDLSRVEAGRLALRAAPFALEGVAGSIRDIFLLPAR 770

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------- 394
           EK +E+  ++DP L   +  DE  +RQ+  NL+ NA+KFT   G V V +          
Sbjct: 771 EKELELDIRLDPRLPARLVGDEARLRQIAFNLVGNAIKFTDT-GSVTVELTPLGLPPAAR 829

Query: 395 --------------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
                                 +     + ++D G GI E  +  +   F Q   +    
Sbjct: 830 PAGNAAGDATSGPAGNTPAHRPAQLRLLLEVRDTGIGIPESHLERIFEPFSQLDGSHVRR 889

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             G GLGL I + ++A  GG+  + S    G  +   LP
Sbjct: 890 HGGAGLGLSIVRRLVALMGGELSLESTPGTGTNIFISLP 928


>gi|332186852|ref|ZP_08388594.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332013185|gb|EGI55248.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 805

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 18/301 (5%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            + + G +   +     +   LF         +A   DL                R E+ 
Sbjct: 390 RLIMFGSVGAIIVVLGLLGIWLFTLGRSRNRIRAAHGDLAITN-----------DRLEKA 438

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              K+ FLA+ SHE+RTPLN ILG ++V+  +     +    +E +  +H +G  +  L+
Sbjct: 439 LAVKTDFLATTSHEIRTPLNGILGMTQVMLADIRLSSDT---RERVEVMHGAGLTMRALV 495

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +++LD+++IE GR  L ++   L   +RE   + + +A  K I     +    + V  D 
Sbjct: 496 DDLLDVAKIEHGRLTLEQAPFDLAATIREASRLWEDQAAAKGIGFTTDLRDCPTIVMGDS 555

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +RQ++ NLLSNA+KFT   GRV ++V   S     I + D G GI   ++  +  +F 
Sbjct: 556 ARIRQIVFNLLSNALKFTPE-GRVDLSVSRQSKG-VSIRVSDTGIGIPAEKLEEIFEAFR 613

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           Q   +      G GLGL I + +    GG   + S+L  G      LP   V   +P  +
Sbjct: 614 QADASTTRQFGGTGLGLAICRRLAQAMGGDVTVDSELGHGTHFTLSLPL--VEQPVPSSS 671

Query: 486 H 486
            
Sbjct: 672 E 672


>gi|298480889|ref|ZP_06999084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272912|gb|EFI14478.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 623

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 318 WGLDPAVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 377

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    +G    
Sbjct: 378 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTE 430

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 431 EEQQSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 490

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
               +           +  D + M+QV++NLLSNA KFT   G++ +        +    
Sbjct: 491 SSENQFLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKR-GKITLDFSVNEETQMAVF 549

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 550 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWKGSIWIDPDYT 605

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 606 GGARFVFSHPL 616


>gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
 gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
          Length = 663

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 28/251 (11%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLASMSHELRTPLNAI+G+S+++  +       +   + +  I  SG HLL+LI +IL
Sbjct: 398 SEFLASMSHELRTPLNAIIGYSDLLREDAEDYGYTDFVPD-LEQIKSSGLHLLSLIQDIL 456

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+S++E+G   L      +  ++ E   ++Q    +   +        + S++AD   ++
Sbjct: 457 DISKLESGEMNLYLEHFDIATLINEVQAIIQPLVNQNQNQFKIDCVQPIGSMYADRTKVK 516

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWT--------------------------SGRGQYI 403
           Q +LNLLSNA KFT   G V + V  T                          S      
Sbjct: 517 QALLNLLSNAAKFTKE-GTVTLKVTRTLFPLQNGQTHSDPKSINHSHHSEKRLSEDWVTF 575

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S++D G G+   ++  +   F Q   +      G GLGL I+Q       G+  + S ++
Sbjct: 576 SVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYGGTGLGLSISQRFCEMMMGKITVESTIK 635

Query: 464 EGVEVIAILPN 474
            G      LP 
Sbjct: 636 VGSTFSIKLPA 646


>gi|146340985|ref|YP_001206033.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193791|emb|CAL77808.1| putative sensor histidine kinase with PAS/PAC and response
           regulator receiver domains [Bradyrhizobium sp. ORS278]
          Length = 771

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 16/304 (5%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            L+ +    + + +I +  ++A        +T    + +    +        + E   A 
Sbjct: 305 TLADRMAQRLSIPEILIHVVVAGGERRRWALTARPARDHEGKFAGYRGFGRDVTERWRA- 363

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  ++AE E+ AKS FLA MSHE+RTP+N +LG +  +    +    ++  +  + 
Sbjct: 364 -------EQAEAESRAKSDFLAMMSHEIRTPMNGVLGLASTLLETKL----DDEQRHAVM 412

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SG +L  ++N+ILDLS++ AG+ E      S   +V     ++ + A+ K++ +  
Sbjct: 413 TIRESGDNLQRILNDILDLSKLNAGKLEFETVDFSPSALVEAVTAIIGVNAKSKSLLVNA 472

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDN 408
            IDP L   +  D   +RQV++NL SNAVKFT  GG  + V+          I   + D 
Sbjct: 473 DIDPKLPPSLKGDVARIRQVLINLASNAVKFTERGGVTIAVSCRTRDDHKATIEWRVSDT 532

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    +  + T F Q   +I     G GLGL I++ I+   GG   + S   EG   
Sbjct: 533 GIGIPADRVGKLFTDFAQADASINRRFGGTGLGLAISRRIIEQMGGAIAVSSVQGEGSTF 592

Query: 469 IAIL 472
              L
Sbjct: 593 RFSL 596



 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 47/198 (23%), Gaps = 4/198 (2%)

Query: 42  VESLFRVSPILPLFVLLVANIGTWF--TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
             +      I   F      +G ++    N     W    +      L    +       
Sbjct: 55  AVARLVPVTIGINFANAAIILGVFWNIVSNVFLIAWGTAIVVSGGMALRGWWR-ARESRP 113

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
                     ++V    +   W  L L+      P    I   + +   +S  A +   +
Sbjct: 114 QEASERAIRRMIVQAFFLACIWGSLPLIVMPQVEPHLQII-VGSLMTGMISGGAFAMSSV 172

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
           P       + +++       +      + L   L    SF            +  L  Q 
Sbjct: 173 PRGGLAYTWTLMLCSVGALFLCGGATYLVLVVFLCLYTSFMVRHLVAHGNVFLDNLKAQI 232

Query: 220 EKDDLIAELEVAKSLSDE 237
             +     + +      E
Sbjct: 233 RHERQNETISLLLKEFQE 250


>gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 445

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 10/283 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L+  L   L     +       N+ + + +   D++         +++      E     
Sbjct: 172 LSQRLLAPLKTLIAVVGKFSSKNLHLRAPETSNDEIGELARAFNRMAE----ALERNEKL 227

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           + + +A ++HELRTPL+ + G  E++  + +     E  +E +  +    + L  L+ E+
Sbjct: 228 RRQMIADIAHELRTPLSILQGNFELLLEKVI-----EADEETLRSLAEEVKRLSRLVEEL 282

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            +LS  EAG  ++    + +     E        A+ K+I     +         D   M
Sbjct: 283 RELSLAEAGELKILPVEVEVNQFFSEVAAPFTSLAEAKSISFETTLPAKGEKYSFDPDRM 342

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV+ NLL+NA ++T  GG+V + V         I + D GPGI   ++P +   F +G 
Sbjct: 343 KQVVYNLLTNAFQYTGEGGKVKLEVKLL-DGKLLIEVTDTGPGIPPEDLPYIFERFYRGE 401

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +      G GLGL IA+S++  HGG+  + S + +G     +
Sbjct: 402 KSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGTTFKVV 444


>gi|320086127|emb|CBY95901.1| two-component sensor/regulator [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 920

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATSPLSTRLPAQRLDELDSIAGAFNQLLDALQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 1090

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 8/261 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           DD   E  + + +       A+  N AKS F + MSH++RTP+NAI+G S +     +  
Sbjct: 549 DDQRTEKMLQEQVLRNALASAKAANQAKSDFFSRMSHDIRTPMNAIIGMSAI---GQLKM 605

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  +E    I  S ++LL+LIN+ILD+S+IE+G+  L+ +      ++ +   ++  
Sbjct: 606 NEPERVRECFSKIDVSSRYLLSLINDILDMSKIESGKMILTNARFDFSGLISQINTIIYP 665

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSG 398
           +A E  +         L   +  D   + Q+++NLLSNA+KFT  GG++ + +G    + 
Sbjct: 666 QALENRLSCRIHHVGVLERFYIGDALRINQILMNLLSNALKFTPAGGKIDLDIGESRRAN 725

Query: 399 RGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
              Y    I D G G++   +  +   F Q +  I   + G GLGL I  S++   GG  
Sbjct: 726 GFAYVQFRISDTGIGMSPEFMKRLYVPFEQETTDIARNKIGSGLGLSIVHSMVQLMGGTI 785

Query: 457 LIRSKLREGVEVIAILPNTRV 477
            ++S+   G      LP   V
Sbjct: 786 EVQSEKNRGTVFTVTLPLKLV 806


>gi|163787614|ref|ZP_02182061.1| multi-sensor hybrid histidine kinase [Flavobacteriales bacterium
           ALC-1]
 gi|159877502|gb|EDP71559.1| multi-sensor hybrid histidine kinase [Flavobacteriales bacterium
           ALC-1]
          Length = 715

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 13/278 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +      L          +++AE  +  K+ FL++++HELRTPL A+ G + ++  E   
Sbjct: 308 RLRTNNMLHKKNDELIVAKEKAELASKTKANFLSTVTHELRTPLYAVTGLTNMLLDEEPK 367

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                    ++  +  SG +LL  IN+IL +++IEA + EL     +L + +   I  L 
Sbjct: 368 EHQIP----HLKSLKFSGDYLLTFINDILQINKIEANKVELDPEQFNLKNKIENVISALS 423

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A++    +    +  L      D+  + Q+++NLL NA+KFT   G + V       +
Sbjct: 424 NSAKDNETSLHFDFEDGLPETYTGDQLKISQILINLLGNAIKFT-KDGDIWVRAYKIDKK 482

Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    I+DNG GI + +   +  SF QGS+ I     G GLGL I + ++    G+
Sbjct: 483 DNMYTLRFEIEDNGIGITKEKQDHMFESFSQGSVQINRKYGGTGLGLSIVKGLIQILKGK 542

Query: 456 FLIRSKLREGVEVIAILPNTR---VLNFIPEDNHESTQ 490
             ++S+L +G      LP      V     E+  +S +
Sbjct: 543 IYLKSELGKGTTFFFELPLEYSEMVEETKVEETKKSNK 580


>gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM]
 gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM]
          Length = 1083

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 28/267 (10%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG----------------- 280
              + AE  N+AK+ FL  MSHELRTPL  ILG++  +    +                  
Sbjct: 810  ALQEAEAANVAKTDFLNVMSHELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTA 869

Query: 281  ----PLNNETYKE---YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                       +E   Y G +  SG+HLL LINE+LDL++I+AG+ ++    + L  +VR
Sbjct: 870  TGAIEHLEAVQREVGKYAGKMEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVR 929

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
              +      A EK++++         SV+ADE  +RQ+++NL+ NA+KFT   G++ +  
Sbjct: 930  SVLDQFSNAAHEKSVDLV--GAIGELSVFADEMRLRQILINLVGNALKFTDK-GQIRIEA 986

Query: 394  GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                G    I ++D+G GI   E   +   F Q   +   A+ G GLGL I++ ++   G
Sbjct: 987  E-VKGADVAIHVRDSGCGIPAKEQALIFDQFNQIDSSASRAKGGTGLGLTISRRLVELQG 1045

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNF 480
            G+  + S+  +G      LP       
Sbjct: 1046 GRISVTSEEGKGSVFTFTLPMEERKPS 1072


>gi|238917141|ref|YP_002930658.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Eubacterium eligens ATCC 27750]
 gi|238872501|gb|ACR72211.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Eubacterium eligens ATCC 27750]
          Length = 496

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQA----EKDDLIAELEVAKSLSDE--TRK 240
           I +   L   +    ++   + +    + +  A    E+  L    E+ +   D      
Sbjct: 201 IIITICLIALIVLLHFLNRPVRRIIDIMANVNAGHNDERIPLKGYTEIREIAEDFNGIMD 260

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +A E + +++ F++++SHEL+TP+ +I   +E +  +   P+  E Y+E++ DI      
Sbjct: 261 KANETDQSRAEFVSNVSHELKTPITSIKVLAESLNTQENVPI--EVYQEFMQDIVTEIDR 318

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
              +I ++L L R++     L+ +++++ +++   +  L+  AQ+KNIE+  +       
Sbjct: 319 ESKIIEDLLTLVRMDKTTATLNITSVNMNELLEMTLKRLKPIAQKKNIELLFE-SFRPVV 377

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              DE  M QVI NL+ NA+K+    G VHV++     +  YI ++D+G GI E     +
Sbjct: 378 AQIDEVKMTQVISNLVENAIKYNVDDGWVHVSLNA-DYQYFYIRVEDSGIGIPEESQNKI 436

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              F +   A      G GLGL I ++I+  H G   + S+   G      +P   V
Sbjct: 437 FERFYRVDKARSRETGGTGLGLAIVRNIILLHHGTIKVHSEENIGTTFTMRVPLNYV 493


>gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae LMA3894-4]
          Length = 1129

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 335 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 394

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 395 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELENNLLIIRKQND 451

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 452 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 510

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 511 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 570

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 571 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 628

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 629 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 683


>gi|254235813|ref|ZP_04929136.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
 gi|126167744|gb|EAZ53255.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
          Length = 786

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 276 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 335

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 336 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 391

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 392 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 449

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q   +I     G GLGL + + +     G+  
Sbjct: 450 EG-VRISVRDTGIGIAQEALDRIFQPFTQADASITRQYGGTGLGLALTRKLCEAMQGELT 508

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 509 VESTVGLGSLFSVGLPLAPVSPPL 532


>gi|229494556|ref|ZP_04388319.1| sensor kinase, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229318918|gb|EEN84776.1| sensor kinase, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 483

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 9/321 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L    L   + +       A          ++++        A      +     ++ V 
Sbjct: 167 LVGLQLGIGLVVLLILGGAAYFVVRRSLRPLVEVEETAAAIAAGDLHRRVPERDDRTEVG 226

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            LS     + ++A+++ A + ++ + + A        RF+   SHELRTPL  I GF+E+
Sbjct: 227 RLS--VALNGMLAQIQHAFAATEASEESARRSEEKMRRFVGDASHELRTPLTTIRGFAEL 284

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                M           +  I      +  L+ ++L L+R++  R  L    + L+ +  
Sbjct: 285 YRQGAMTDTET-----LMNRIEGEASRMGLLVEDLLMLARLDEQR-PLENKPVDLLAVAA 338

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           + +   +  A ++ +E+     P L  V  DE  +RQV+ NL+ NA+K T    +V V V
Sbjct: 339 DSVQAARAIAPDRTVELQMTGGPGLPEVHGDEARLRQVVANLVGNAIKHTPPDAQVTVRV 398

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           G T      + + D G G+++ +   +   F +   +      G GLGL I  +++A H 
Sbjct: 399 GTTE-NSAVVEVSDTGQGLSDEDAARIFERFYRADTSRTRETGGAGLGLSIVSALVAAHD 457

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G   + + L +G      LP 
Sbjct: 458 GTVSVETSLGQGTTFRVELPR 478


>gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 473

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 12/289 (4%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
              LA  +   L   T+    +   N    + +  +D++    +    ++DE +K     
Sbjct: 193 SYLLAKRIVRPLQEVTHAAKEMALGNFDTKAEKHHEDEVGHLADTLNFMADEIQKN---- 248

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K+ F++S+SHELRTPL +I G+SE +        + E  +  I  I +    L+ L+
Sbjct: 249 DKLKNEFISSISHELRTPLTSIKGWSETLVSGEF--QDPEETRLGINIISKETDRLIGLV 306

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++LD S++++G  ++S   + L  +V+E           K I +  + +     +  D 
Sbjct: 307 EDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPIHIMGDG 366

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++Q+++N + NA+KFT  GG + V++    G+   I+++D G GI    +  V   F 
Sbjct: 367 NRIKQILINSIDNAMKFTPQGGVITVSLKQ-EGKEALITVQDTGEGIPPEILKHVTEKFF 425

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +G     ++ QG GLGL I + +    GG+  I S   EG  +    P 
Sbjct: 426 KG-----TSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFPL 469


>gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS]
 gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS]
          Length = 823

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 25/281 (8%)

Query: 216 SCQAEKDDL---IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             QA+   L    AE+  A++  +E  +  E  +  KS FLA+MSHELRTPLN++L  S+
Sbjct: 98  EVQAKNIALEKTQAEMARARAAIEEKAQELELASKYKSEFLANMSHELRTPLNSLLILSQ 157

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++       L ++   EY+  IH SG  LL LINEILDLS++EAG+ E+    +SL D+V
Sbjct: 158 LLADNKTNNLTDKQV-EYVRTIHSSGSDLLTLINEILDLSKVEAGKIEIRSEDVSLTDLV 216

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                  Q  A EK +    +I   + +V   DE+ ++Q+I NLLSNA KFT   G V +
Sbjct: 217 ATVKQKFQHLATEKGLAFQVQIAQDVPTVLHTDEQRLKQIINNLLSNAFKFTTQ-GEVRL 275

Query: 392 TVGWTSGRG-------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            +   +                        ISI D G GI + +   +  +F Q   +  
Sbjct: 276 DIESFASHQEGKDVLPLGEDLREGYQKFITISITDTGIGIPKDKQQIIFEAFQQADGSTS 335

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               G GLGL I++ +    GG   + S+  +G   +  LP
Sbjct: 336 RRFGGTGLGLSISRQLARLLGGDLRLLSEEGKGSTFVLSLP 376


>gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
 gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
          Length = 566

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 141/300 (47%), Gaps = 8/300 (2%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237
               ++    +          F+ +   + +S +   +   ++    +    ++     E
Sbjct: 134 WQGENLHLPVIIDGETVGELIFSVLQDQIDQSFISKQMELVSDLVHGVIGRHLSLEREVE 193

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKRAEE   A   F+A ++HELRTPLN +LG +E++    +     E  ++Y+ ++ +S
Sbjct: 194 LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL----EEEQRQYLSNLTQS 249

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  L  +IN++LD S++ AG  E+     +  ++ +  + +   +A EK I         
Sbjct: 250 GDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSIDKKLG 309

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   +  D + + Q+++NL+ NA+KFT +GG V + V W      Y  ++D G GI    
Sbjct: 310 IPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWL-NGTAYFEVEDTGIGIPIKA 367

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            P++   F Q   + K + +G GLGL I ++++    GQ    S+ R+G      +P   
Sbjct: 368 QPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVAIPLEE 427


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N I+G +E++    + P      +E +G +  S   LL +IN+I
Sbjct: 365 KSEFLANMSHEIRTPMNGIVGMTELLLETRLTP----EQRESVGLVKSSADALLTVINDI 420

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S+IEAG+ +L     SL D+V + +  L  RA  K +E+  ++ P L  V   D   
Sbjct: 421 LDFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLLGDAHR 480

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+ NL+ NA+KFT   G V V        G       S+ D G GI   ++  V   
Sbjct: 481 LRQVLTNLVGNAIKFTDR-GEVLVRCERVPESGDAVVLRFSVTDTGIGIPGEKLKAVFEP 539

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           F Q   +      G GLGL I Q ++   GG+    S+  +G     
Sbjct: 540 FTQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAESESGKGSTFSF 586


>gi|163731861|ref|ZP_02139308.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
 gi|161395315|gb|EDQ19637.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
          Length = 347

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A++GF E +        +      ++  +      +
Sbjct: 106 LEQAGQMRRDFVANVSHELRTPLTALMGFIETLR--GPAREDAAARDRFLDIMQGEAGRM 163

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LSR+E  +      +++L D+V      L   A++ ++ +   +      +
Sbjct: 164 NRLVGDLLSLSRVEGDQRVRPRKSVNLSDVVSSVARTLAPLAKDTSVVLDCDLPDHPVGL 223

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEG 415
             D   + QV+ NL+ NA+K+ A GGRV + +   +        G YIS+ D GPGI   
Sbjct: 224 IGDADQLMQVVTNLVENAIKYGASGGRVIIKLTEVARDLSLRAPGVYISVTDFGPGIDPV 283

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +P +   F +       A  G GLGL I + I+  H G+  I S+L +G     +LP 
Sbjct: 284 HLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIESELGQGATFTVVLPL 342


>gi|91778396|ref|YP_553604.1| periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691056|gb|ABE34254.1| Periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1173

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 168/350 (48%), Gaps = 7/350 (2%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
           TL    T  P  L + + A LLIA+         + +   +   P +       ++  ++
Sbjct: 594 TLFPRLTLGPAGLRLAQYAGLLIAVVTLLGGVLAVQWYQSVRTLPNLDTTVHDVLLQGYL 653

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243
                  ++    +++  +     K   +    QAE     I       +        AE
Sbjct: 654 KAFFALALVGCIAAWWLVLANENRKVTQEESQRQAELLMQEIEAHRKTDAALQRASAAAE 713

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKSR++  +SHELRTPLN+ILG+++++             +  +  I+RSG+HLL 
Sbjct: 714 SANRAKSRYVTGLSHELRTPLNSILGYAQLLLQG--TDELPPARRNAVATIYRSGEHLLA 771

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           L++ +LD++RIEAG+ +L+ + ISL D V +   ML+ +A +K ++   +    ++  V 
Sbjct: 772 LVDGLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVR 831

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DEK +RQ+++NL+ NA++FT   G V V   + +       I D GPG+   E+  +  
Sbjct: 832 IDEKRVRQILINLIGNAIRFT-SHGSVKVRASY-AWEAITFEITDTGPGMPASELERLFL 889

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F +G+ A +    G GLGL I + +    GG   ++S++ +G   I  L
Sbjct: 890 PFERGAAAREHDH-GAGLGLTICRLLTELMGGNLEVQSEVGKGTRFIVKL 938


>gi|326798783|ref|YP_004316602.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326549547|gb|ADZ77932.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 341

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 150/338 (44%), Gaps = 8/338 (2%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +  S   LI     +  NF   ++ +      V+A      +  ++++  +   +     
Sbjct: 5   LLVSINALIVALSLSSVNFYFQHSWYYFLITFVIAFICSFFVFYYLIERYIYRKITLIYK 64

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-NLA--KSRFLAS 255
               +   L K   + L  Q   D +    E  ++ + E +   +   N    +  FL++
Sbjct: 65  MIHNL--KLGKDLKEALGEQLGDDPINDVHEEVRAWAREKKIEIDALKNQEQFRREFLSN 122

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE +TPL AI G+ E ++   M   + E  + ++     +   L  LI ++ +++++E
Sbjct: 123 ISHEFKTPLFAIQGYLEAVQDGLMY-EDPERAEVFLQKASNNIDRLSYLIKDLDEIAKLE 181

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           +G  +++     L  +V+E +  L+L+A++ +IE+  K   S    V AD + +RQV++N
Sbjct: 182 SGEIKINYQRFDLSLLVKEVMESLELKAEKHDIELIFKQKYSYPIFVNADREKIRQVLVN 241

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SN++K+    G  ++       +   I + D+G GI E  +P +   F +   +    
Sbjct: 242 LISNSIKYGKEKGHTYIKTYELHDQ-VLIEVTDDGIGIEEKYLPRLFERFFRTDRSRSRQ 300

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             G GLGL I + I+  H     +RS    G      L
Sbjct: 301 IGGSGLGLAIVKHILEAHQQTISVRSTEGLGSTFGFTL 338


>gi|312891036|ref|ZP_07750560.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296503|gb|EFQ73648.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1400

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 23/307 (7%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            + L    +  +     +    +   +     I     +        Q E+          
Sbjct: 810  LTLKITVLPPIWRTAWACLLYILMGIGTLLLIRQRGIRKLKADFVIQQER---------- 859

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                 +  ++  E +L K +F  ++SHE RTPL+ IL   + +  ++     +    +++
Sbjct: 860  -----QEVQQMRELDLMKIKFFTNVSHEFRTPLSLILAPVDKLLKQS----TDAEINKHL 910

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I+R+G+ LLNL+N++LD  ++E     L      ++  + +        A+ K + + 
Sbjct: 911  HMINRNGKRLLNLVNQLLDFRKMEVNELRLHSKRADIVKFIEDAAYSFSDIAESKKVTLC 970

Query: 352  QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKD 407
                        DE    +++ NLLSNA KFT  GG++ V + +       +   I + D
Sbjct: 971  FNTQIESIITSFDEDKFERILFNLLSNAFKFTNEGGKIEVKLSFDDFFAVDKMLKIEVTD 1030

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            NG GI   ++  +   F Q         QG G+GL I +  +  H G   ++S + +G  
Sbjct: 1031 NGIGIPADKLDKIFDRFFQNDTPGSMVNQGSGIGLAITKEFVNLHHGTISVKSVVNKGST 1090

Query: 468  VIAILPN 474
             + +LP 
Sbjct: 1091 FVVLLPV 1097


>gi|52079040|ref|YP_077831.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52002251|gb|AAU22193.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
          Length = 1030

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 172/452 (38%), Gaps = 28/452 (6%)

Query: 41  HVESLFRVSPILPLFV----LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
              ++  +  ++ L +    ++     +           + + L   A  L L       
Sbjct: 236 FFSTMCLLFSVIVLLIGRERMIFLLFPSISFSALSVVRATTMVLVSMAVFLYLYFAYKEI 295

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
                    W    ++   A  +   ++  +  G        ++    +   + I+ +  
Sbjct: 296 VS-----KKW----IIAATAFSVLVLMIDFITWGYTDRLAYILHSVLAVTTLIYITYVFA 346

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                 +  S +  + A+S  A + +  +         +  S +   +         I++
Sbjct: 347 ISAVRKMKGSLYLTIAAISMSAFVILTTVSAYSGKRGFSFNSLYAVPS---------IIA 397

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A    +  +   A   ++    +    N  K  F+A  SHE +TPLN+++   + +  
Sbjct: 398 LLAAVLMMAQQFAGAFRENEILSLKLLRMNRLKDEFIAKTSHEFKTPLNSMINICQTLLA 457

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                   E  KE +  + R G  L +L+N+ILDL +++ G  ++    +     +   +
Sbjct: 458 RKRKRTLEEE-KENLQLVIRMGYRLSSLVNDILDLEKMKQGMLQIQAVPVDAHSAISTEM 516

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +L ++ KN+ I  ++   L  V ADE   RQ++ NL+ NA+K+T   G++ ++    
Sbjct: 517 DFYRLLSKNKNVRIVNRVPSGLPLVLADENRFRQIMTNLVDNAIKYTPE-GQITLSAERL 575

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I++ D G GI +     +  +F Q        + G GLGL I + ++    G+ 
Sbjct: 576 DQEKVKITVADTGVGIPKAVRQLIFEAFQQAKN---HKDDGAGLGLSIVRQLVQLQNGEI 632

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+  +G      LP  +  + +P+   E+
Sbjct: 633 WVESEEGKGSAFHFTLPVAK-NDPLPDAKKEN 663



 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 375  LLSNAVKFT----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            L+ NAV         GG + +T    S    YI I+DNG G+   +   + +S    S+ 
Sbjct: 921  LVENAVHHGISKKRGGGWIKLTAKKESENRYYIKIEDNGIGMPPEKQQDIFSSHFTHSVG 980

Query: 431  IKSAEQGVGLGLPIAQSIMANH--GGQFLIRSKLREGVEVIAIL 472
            +K+          I + +   H  G +  I S    G  V  ++
Sbjct: 981  MKN----------INRRL--KHFCGSELNIESTPDSGTAVSMVI 1012


>gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
 gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
          Length = 1216

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 16/279 (5%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I E +         +++AEE +  KS FLA++SHE+RTP+N ILGFSE++  +    
Sbjct: 825  NQDITEQKKLSGELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRK---N 881

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++ E    Y+  + + G  LL+ I+ I+D+S+IE+    +  S ++L  ++ +     QL
Sbjct: 882  ISEEKKDIYLELLEKEGHRLLSFISNIVDISKIESNIINIENSHLNLNSLIDDLYSKYQL 941

Query: 342  RAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SG 398
            + +  NI++        + S++  DE  + Q++ NLL NA+KFT  G    +  G+T   
Sbjct: 942  KLEGTNIKLEVNKALSDTDSAIETDENKLVQILSNLLENAIKFTKEGS---IEFGYTLKE 998

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  +KD+G GI E E   +   F QG         GVGLGL I + ++    G   I
Sbjct: 999  EILQFYVKDSGIGIDEEEQKNIFDRFTQGKREQTHNL-GVGLGLSIVKGLIKILNGSVWI 1057

Query: 459  RSKLREGVEVIAILPNTRVLNFI-----PEDNH-ESTQY 491
             SK+ EG      +P  +V + I     P +   E+  +
Sbjct: 1058 ESKIGEGSIFYFTIPYKQVADKIAIVNDPSETTLENGDF 1096


>gi|229191305|ref|ZP_04318291.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
 gi|228592110|gb|EEK49943.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
          Length = 448

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKNIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFNVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|311032628|ref|ZP_07710718.1| sensor histidine kinase [Bacillus sp. m3-13]
          Length = 462

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 154/354 (43%), Gaps = 25/354 (7%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
            + + +        E +         IA +   + NF++     +    +VV        
Sbjct: 130 ISAVVIPLSVEDRLEAVIFLYIPLTAIAEAFEPIRNFLIVGVFLVVILLIVVGTKIT--- 186

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                       +   +     +   + + +         KD++ +      ++S     
Sbjct: 187 ----------NRIVQPIKQMERVAKDIAQGDFSKRLSIKGKDEIASLGRSINTMSSN--- 233

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +E +  +  FL ++SHELRTP++ + G+SE +E   +        +++   + +    
Sbjct: 234 -LDEVDRNRREFLGNVSHELRTPISYLKGYSEALEEGIIP------IEKFAETVKKETDR 286

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L++++LDL+++E   Y +++  + L ++V+E +   +L+  +KN+    ++D  +  
Sbjct: 287 MERLVHDLLDLAQLEGDSYPMNKEPVILAELVKEVLDRFRLKLNDKNLIAEVQLDEGVV- 345

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QVI NLLSNA+KF+A    + ++V      G  + I+D G GI E ++P +
Sbjct: 346 VNGDYGRLDQVIDNLLSNAIKFSANNRTIRISVVEVKTMGI-LKIEDEGVGIPEEDVPYI 404

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I Q I+  H G+  I SK  +G  V   +P 
Sbjct: 405 FERFYRVEKARTRKSGGTGLGLSIVQQIINKHEGKIHIDSKRGKGTVVTVEIPL 458


>gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
 gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
          Length = 1266

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1008 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1067

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1068 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1127

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  S+  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1128 ANGQRVIIRTALSHSVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1187

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1188 LRVRDTGIGMTRAELDHAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINSA 1247

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1248 PNEGTLVEITFPSQRVL 1264


>gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 618

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 8/335 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHL 207
           L  S L   +L      +   + + +  +      +  +    +     + FFT +   L
Sbjct: 21  LRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKL 80

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +S + +          ++E  +A+          E+ +  K+R +A++SHELRTPLN I
Sbjct: 81  ERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGI 140

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G S ++  E +     ET + Y+  IH S   L ++ ++I+DL +I+A R EL+  A+ 
Sbjct: 141 IGLSRILLDEKL----TETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVE 196

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L   + +   + +L AQ+K +      D +L      D   + Q++ NL+ NAVKFT   
Sbjct: 197 LNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQE- 255

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           GR+ + V   S      S+ D G GI   E+P V   + Q   +      G G+GL I+Q
Sbjct: 256 GRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGH-KPLGSGIGLAISQ 314

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +I    GG     S++ +G     +LP   V   +
Sbjct: 315 TIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPV 349


>gi|296447079|ref|ZP_06889012.1| integral membrane sensor hybrid histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255424|gb|EFH02518.1| integral membrane sensor hybrid histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 1122

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 170/352 (48%), Gaps = 11/352 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           +I L +  L +  +  A++L +   V   +   + +   +      ++    ++   +  
Sbjct: 570 VIVLGLLTLVSAAILGAIYLQYAAAVGPAARPIVRTTLEIVFVGLLLVMGVAAWTLVLAQ 629

Query: 206 HLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
              +   +    Q E   + IA  E   +     ++ AE  N+AK+RF+A ++HE+R+PL
Sbjct: 630 ESRRLAEEETRRQTEFLREEIAAHERTDAELQRAKEAAEGANIAKTRFIAGLNHEIRSPL 689

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI G+++++E +          ++    I RS +H+ NLI+ +LD+++IE G  +++  
Sbjct: 690 NAINGYAQLLERDVTDNP-----QDAARVIRRSAEHITNLIDGLLDVAKIETGSLDVARD 744

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383
              + + + + + M +L+A  K +    +  P L   V  D+K +RQ+++NL+SNAVKFT
Sbjct: 745 IFRIDETLDQLVDMFRLQAAAKGVAFRYERSPLLPRYVRTDKKRLRQILINLVSNAVKFT 804

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G   + VG+ +       ++D G GI   ++  +   F +G +   +A  G GLGL 
Sbjct: 805 ET-GHASLKVGFRND-IAEFIVEDTGVGILPEDLEGIFAPFERGRLPQVAAIPGTGLGLT 862

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           I + +    GG+  + SK+  G   +  L         P++  +  + + YA
Sbjct: 863 ITKLLTQILGGEIKVESKVGVGSRFVVRL--YLTAASSPDEGPKPPRIRGYA 912


>gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
 gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
          Length = 566

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 8/306 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVA 231
            L++      ++    +          F+ +   + +S +   +   ++    +    ++
Sbjct: 128 ILTSPNWQGENLHLPVIIDGETVGELIFSVLQDQIDQSFISKQMELVSDLVHGVIGRHLS 187

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                E RKRAEE   A   F+A ++HELRTPLN +LG +E++    +     E  ++Y+
Sbjct: 188 LEREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL----EEEQRQYL 243

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            ++ +SG  L  +IN++LD S++ AG  E+     +  ++ +  + +   +A EK I   
Sbjct: 244 SNLTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFS 303

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                 +   +  D + + Q+++NL+ NA+KFT +GG V + V W      Y  ++D G 
Sbjct: 304 IDKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWL-NGTAYFEVEDTGI 361

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI     P++   F Q   + K + +G GLGL I ++++    GQ    S+ R+G     
Sbjct: 362 GIPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKV 421

Query: 471 ILPNTR 476
            +P   
Sbjct: 422 AIPLEE 427


>gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 612

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 3/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL  +  + E +    M   + +    ++    +    ++
Sbjct: 376 EKIENERREFVANVSHELRTPLTTMKSYLEALADGAM--QDEDIAPRFLEVTQKETDRMI 433

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+I++  Y L    + L   +   +   ++  ++KNI+  + I    + V 
Sbjct: 434 RLVNDLLQLSKIDSNDYRLDLHWVELGAFLHSIVERFEMVVKDKNIDFHRHIAKQPTYVK 493

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   M QV+ N+LSNA+K++  GG V +T+    G    ISI D G GI       +  
Sbjct: 494 IDTDKMTQVLDNILSNAIKYSPSGGNVTITL-LHQGNKARISIADEGLGIPAESQDKIFE 552

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A      G GLGL IA   +  H G   + S+  EG  +   LP
Sbjct: 553 RFYRVDKARARNVGGTGLGLAIASEYVHAHEGDIWVHSEYNEGTTIYITLP 603


>gi|298244433|ref|ZP_06968239.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297551914|gb|EFH85779.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 517

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 11/357 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           +  L+         L ++          +I  +S    P   FL+ F +++ L      S
Sbjct: 150 VPYLLAKDNLGQHQLVVFIPLVKNFHTTAILQVSTPTAPIDDFLTTFHLILFLGIMCTFS 209

Query: 182 MHVLDIS-LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           + +  I  L  +    L      +  + +  + I   Q   DD I  L  + +       
Sbjct: 210 IAIALIFPLVSIALRPLVEIERTSRQIAQGELSIRIDQPPTDDEIGRLARSFNAMVA--- 266

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R E     + RF+  +SHELRTPL  + G  E++ L      + E  +     +    + 
Sbjct: 267 RLETAFQKQKRFVGDVSHELRTPLTVLNGNLEMLLLGV-DRGDREITRHLARGMFAEVRR 325

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  ++ ++L L+R++ GR  L +  +++  ++          A     EI   I+P L +
Sbjct: 326 MHRMVEDLLALTRLDEGRLVLRKDTVTVDTLLHTVCEQANHLA--HGQEIRCLIEPGLPA 383

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD   ++Q++LNL+ NA+K+T +GG++ + V   S R   ++I D G GI+   +P V
Sbjct: 384 ISADRDRLQQILLNLVDNALKYTPLGGQIELHVLKESQRTVALTINDTGQGISPEALPHV 443

Query: 421 LTSFGQGSIAIKSA---EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   +   +     G GLGL IA+ ++    G   I S L +G  V    P 
Sbjct: 444 FDRFYRADPSRSRSSVYSGGSGLGLAIAKELVEAQHGTIEISSTLGKGTSVTLRFPA 500


>gi|254442957|ref|ZP_05056433.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257265|gb|EDY81573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 799

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 24/253 (9%)

Query: 242 AEEENLAK-------------SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           A +  +AK             S FLA+MSHE+RTP+N ILG   ++E      ++++  +
Sbjct: 263 ARQAEIAKQLAEKANAANEAKSTFLANMSHEIRTPMNGILGMLIILED----IISSKDQE 318

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +     S   LL +INEILD S+IEA   EL    I++ D+      ++ L+A EK+I
Sbjct: 319 ELVLSAKESAHSLLKIINEILDFSKIEANAVELESIPINIADVAYGATELIALKAHEKDI 378

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQY 402
           ++  ++DP+L  S+  D   +RQV +NLL NA+KFT   G V + V              
Sbjct: 379 QLITQVDPTLHDSLVGDPHRIRQVCINLLGNALKFT-ENGSVRLRVARARTQQEGSSRIR 437

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I I D G GI + +I T+  +F Q   +      G GLGL I++ ++   GG   + S++
Sbjct: 438 IEISDTGTGIPKEKIKTLFQAFSQVDSSTTRVYGGTGLGLSISRKLVELMGGVIGVESEI 497

Query: 463 REGVEVIAILPNT 475
            +G      +P  
Sbjct: 498 NKGSTFWMEIPLK 510


>gi|90418935|ref|ZP_01226846.1| putative phosphate sensor histidine kinase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337015|gb|EAS50720.1| putative phosphate sensor histidine kinase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 461

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 169/437 (38%), Gaps = 30/437 (6%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
                L+   G  +      P    + L + A  L + ++V      +            
Sbjct: 50  VALAALIGLGGLGWFVPQAAPGCVAVFLFLMAV-LYVPQRVDRRGRAVTASERADT---- 104

Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTI-YKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
                G+   +  L +P       + + Y++   LI     AL + +        F   V
Sbjct: 105 TWPGRGVKAVVEALQQPAFIIDRQMLLRYRNPASLIGFGNMALGDALSLRFRSPEFLATV 164

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A+          ++          +       Y   + +  ++       +L  E    
Sbjct: 165 EAVLRDNQPGRVTIEERRPVERVWQIEILPIPPYQGERPHFFLIRFSDRTAELRIE---- 220

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                            ++ F+A+ SHELRTPL ++ GF E +        +    ++++
Sbjct: 221 ---------------RMRTDFVANASHELRTPLASLSGFIETLL--GPAKDDPAAREKFL 263

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G +      +  LI+++L LSRIE  R+    + + L  I+R+    L   A + ++E+ 
Sbjct: 264 GIMREQATRMSRLIDDLLSLSRIEMKRHVPISTRVDLGAILRKVESQLAPLAAQLDVELS 323

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDN 408
             +     ++  DE  + QV  NL+ NA K+   G RV +++  T   G+     +++D 
Sbjct: 324 LDVPDEPVAIPGDEDELMQVFSNLVENACKYGETGKRVEISLTRTVEAGESFVDAAVRDF 383

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGI    +P +   F +       A++G GLGL I ++I+  H G+ L+ S + +G   
Sbjct: 384 GPGIPAEHVPRLTERFYRVDPGRSRAKRGTGLGLSITRNILLRHRGRLLVESTIGKGSVF 443

Query: 469 IAILPNTRVLNFIPEDN 485
            A LP  +V +  P + 
Sbjct: 444 TARLPLPQVESGDPREE 460


>gi|15598240|ref|NP_251734.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9949149|gb|AAG06432.1|AE004729_6 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 741

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 175/469 (37%), Gaps = 32/469 (6%)

Query: 22  HLGLEYPSKMD--FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT 79
            +            D   +    + L   SP   +  LLVA +                 
Sbjct: 39  RIPAPDRPGDADVVDEAPLRQAADGLRSPSPSSLVLGLLVACL----------------- 81

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
           + V     +   ++     +  E  +     L   +  G+ + +      G         
Sbjct: 82  VCVGCLGWNTVLQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNY 141

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
            +S  +    +   L           +       L+     +    D+++          
Sbjct: 142 LESLRMTREQARGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIH 201

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                Y   +  V  L         I E E       E  ++A+E N AKS FLA+MSHE
Sbjct: 202 HWVTPYRDRQGRVLGLMNGWID---ITERERLARQLREAMRQADEANRAKSVFLATMSHE 258

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA++G  E++          +  +  +   + +   L  LI +ILD+++IE+G  
Sbjct: 259 IRTPMNAVIGILELVLQRLA---PEQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHL 315

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L+   + L  +V     M +  A++K + +  ++D +    V  D    +QV+ NL+SN
Sbjct: 316 TLTPERVRLRHVVESVRRMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSN 375

Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT   G+V + +   S         + ++D+G GIA  +   +   F Q +      
Sbjct: 376 AIKFTER-GQVTIRLQERSLDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-V 433

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           + G GLGL I + ++   GG   + S+  +G  V   L   +    +PE
Sbjct: 434 QGGTGLGLAICRKLVDLMGGDVEMHSEPGKGTRVSLDLLLRQCGPKMPE 482


>gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 952

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E +  +      ++ AEE   A+ +F A+MSHE+RTPLNAI+G S ++         +
Sbjct: 430 MNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLL----YDTQPS 485

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYI  +  S   L +LI+++LD+++IEAG  E+      L  ++R    + +++ Q
Sbjct: 486 AQQREYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRSTQKVFEMKLQ 545

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGR-- 399
            + I I   +D  ++ +   D+  + Q+++NL+ NA KFT   G++ +   V    G   
Sbjct: 546 GRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEE-GQIQIIGKVKKEEGDKT 604

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G GI   +I  V   F Q   +     +G GLGL I + ++   GG   ++
Sbjct: 605 WIEFTVSDTGVGIPADKIGLVFKKFKQV-NSQGYKHKGTGLGLAITKELVELQGGTISVK 663

Query: 460 SKLREGVEVIAILP 473
           S+   G     ++P
Sbjct: 664 SQEGVGSSFTFVIP 677


>gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 603

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 115/231 (49%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    +  F+A++SHELRTPL  +  ++E +    M     ET   ++  + +  + ++ 
Sbjct: 363 ELIRIQQEFVANVSHELRTPLTTMKSYTETLLGGAM--YEPETCLSFLSTMEKETERMVR 420

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L LS+++  +    +  + L ++V E +  L+++ QE+   +  ++  +      
Sbjct: 421 LVKDLLALSQLDYRQVAWRKEKLPLNELVSEVVNELRVKFQEEPRHVTVELPETTVWHCF 480

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M+QV++N++ N+ K+TA  G + + +   +     I + D+G GI   ++  V   
Sbjct: 481 DRDKMKQVLINVIQNSFKYTAEHGLIRIALE-VAEDQAVIHVADDGIGIPPEDVKRVFDR 539

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL IA+ I+  HGG   + S+  +G +    LP 
Sbjct: 540 FYRVDKARSRDFGGTGLGLSIAREIVEAHGGSITVCSEPEKGTQFTISLPL 590


>gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
 gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1180

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 162/373 (43%), Gaps = 11/373 (2%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS---FFPV 170
            I +         +     T E   +  +A LL       +    L   +F         
Sbjct: 359 SILLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQMIGQRLESVLFAGEEKLHFH 418

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +    +       +  S     + +      +   L    +            I+    
Sbjct: 419 NILEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPVQLGSEMLLTAFIRDISRRME 478

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            ++     +++AE+ + AKSRFLA+MSHE+R+PLNA+LG  ++I    +    N+  + Y
Sbjct: 479 YETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVDLILDSRL----NKEQRIY 534

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
                 +G  LL+ IN+ILD S+IEAG+  L ESA S   +  + + +L  +AQ+K I +
Sbjct: 535 ANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAKLATQVLQVLSPKAQDKGIVL 594

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--IKD 407
              ++ ++   +  D + +RQV+ NL+ NA+KF+  GG V + +         +   I D
Sbjct: 595 AIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKFSF-GGCVAIEMWLADTDEARLCCKISD 653

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+E  +PT+   F Q   +  +   G GLGL I   ++A  GGQ  ++S+  +G  
Sbjct: 654 QGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLGLAICAELIAQMGGQIAVKSQQGKGSC 713

Query: 468 VIAILPNTRVLNF 480
               L   R  + 
Sbjct: 714 FSFDLLLKRDESA 726


>gi|255514120|gb|EET90383.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 745

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 7/276 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           IL  + E   +I   E      D   KR+E     KS+F++ ++HEL+TPL  I+GF+++
Sbjct: 472 ILLKELETKQMIERQEEYLRALDTRIKRSESVGQLKSQFISDIAHELKTPLTNIMGFTKL 531

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G +  E  KEY+  I      L+ +I ++LD ++++A R +L  + IS+ ++  
Sbjct: 532 LYDGEFGEI-PEEQKEYLKTILDESDRLMFIIMQVLDAAKLDARRVKLDLTEISMTELYN 590

Query: 334 E-CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
              I  L+  A  K +     +      V AD   + QV  NL+ NA+KFT  GG + V 
Sbjct: 591 NPSIRALEESATNKGLAFDWIVSYDTPIVQADLSRIIQVFTNLIGNAIKFTEKGG-IKVN 649

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMA 450
           +   S       + D G GI E +   +   F Q S          G GLGL I + I++
Sbjct: 650 IYKKSRNTIACEVIDTGIGIGEEDKRKIFRKFYQASKKNLTIQNGAGTGLGLAITKEIVS 709

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN--FIPED 484
            H G+    S+L +G +    +P  +  N    P++
Sbjct: 710 LHHGKIKFESELGKGSKFWFTIPIKQNPNRKSRPQE 745


>gi|332981850|ref|YP_004463291.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699528|gb|AEE96469.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 477

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 11/363 (3%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           Q   G   T +   +        +     A   I   +  +++  +  A   S   V + 
Sbjct: 117 QAVSGGLGTWIGYTDYDDQAVMAVAYPLKADGQIVGVLRFITSLGIVDAQINSMIIVFIL 176

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +   A+ +  ++ + L+  +   +S  T     + + +    S +   D++    +    
Sbjct: 177 IGLIAVATAGIISLVLSNDIINPISEVTKAAQRMAQGDFNTRSRKRSNDEIGQLSDTLNY 236

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           ++ E  K+       K  F+AS+SHELRTPL AI G++ +++ + M   + +  KE +G 
Sbjct: 237 MAGEIIKK----EKLKDEFIASVSHELRTPLTAIKGWAIILDTDDMD--DRKLLKEGLGI 290

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I      L +++ ++LD S++ +G+  L+     +  +       +   A+   I+   +
Sbjct: 291 ISNEADRLSSIVEDLLDFSKLASGKMRLNRRKTDVKSVAEYVKTHMAPVAERNAIQFTTQ 350

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               +   + D   M+QV++N+L NA KFT  GG V + + W         +KDNG GI 
Sbjct: 351 CRDDIPVAYMDADRMKQVLINVLDNAFKFTDTGGEVEL-MAWAENGHLIFDVKDNGSGID 409

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E ++  +   F +G  +  S     GLGL IA  I+  HGG   I S L EG  V   +P
Sbjct: 410 EEDLAHIKQKFYKGKNSKAS----SGLGLSIADEIVRLHGGSMDIDSSLNEGTTVTIRIP 465

Query: 474 NTR 476
             +
Sbjct: 466 LEQ 468


>gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 646

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 149 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 204

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 205 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 264

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 265 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 322

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 323 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 382

Query: 469 IAILPN 474
              +P 
Sbjct: 383 TLRIPL 388


>gi|319892739|ref|YP_004149614.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162435|gb|ADV05978.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 566

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+A++SHEL+TP+ ++ GF+E +        +  +   ++  I +    + +L+ ++
Sbjct: 346 RSEFVANVSHELKTPITSMKGFTETLIDGA--KNDEASLDLFLNIILKESNRIQSLVEDL 403

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS+IE     L +  I L D+ +    ++Q  A EK+I++  +I+P++ +  ADE  +
Sbjct: 404 LDLSKIEQNT-TLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNV-TAMADENKI 461

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI+NL++NAV ++     V + V     +   I + D G GI E E   +   F +  
Sbjct: 462 SQVIVNLMTNAVNYSPENRTVTLAVYR-ENQHPVIEVIDQGIGIGEKEKYRIFERFYRVD 520

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A      G GLGL I + I+  + G   + S+L +G     +LP
Sbjct: 521 KARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
 gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
          Length = 1547

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 238  TRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             R++AE+              AKS FLA MSHE+RTPLN ++G   ++    +    ++ 
Sbjct: 846  ARQKAEKALVAAKEAAEQAAHAKSDFLAMMSHEIRTPLNGVMGMLSLLNRTQL----SDE 901

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +     S   LLN+IN+ILD S+++AG+ EL     +LI  + E    + +RAQEK
Sbjct: 902  QRRKLTIASHSSNTLLNIINDILDFSKVDAGKIELESIEFNLIAQLEEFSESMAMRAQEK 961

Query: 347  NIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-- 403
            ++E+     D +   V  D   +RQV+ NL+ NA+KFTA  G V V       +   I  
Sbjct: 962  HVELILDTTDINTPMVCGDPGRIRQVLANLVGNAIKFTAE-GEVLVRCALVPQKDDLIFQ 1020

Query: 404  -SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             S+ D G GI   ++  +   F Q   +      G GLGL I + +    GG     S+L
Sbjct: 1021 VSVVDTGIGIENDKLDELFNPFTQVDASTTREYGGTGLGLAICKKLCVLMGGDIAAHSEL 1080

Query: 463  REGVEVIAI 471
              G      
Sbjct: 1081 GSGSTFDFH 1089


>gi|269926212|ref|YP_003322835.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789872|gb|ACZ42013.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 477

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 146/339 (43%), Gaps = 19/339 (5%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             +L       L    L      +     +A++   + + +V + SL       L     
Sbjct: 153 IGVLQVARSLQLIEQTLARLRLFAIVGFTLAMTASILATFYVANRSLF-----PLKELIR 207

Query: 203 ITYHLFKSNVKILSCQA-----EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
               + +S       +      E   L +         + + K+  E   A+ RF+A  S
Sbjct: 208 TAERVGRSGDLSQRVKTSPNLDEVGKLASTFNTMLERLELSDKQLRETLDAERRFVADAS 267

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPL  ILG + ++    +  ++ E  +E +  I+     +  L++++L L+R +AG
Sbjct: 268 HELRTPLTTILGNAGLLLK--VPNMSPEDRQESLEQIYEEADRMRRLVSDLLTLARADAG 325

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            + L +  + +  +V   +  ++ RA ++ + I +  D     V  D+  ++Q++L LL 
Sbjct: 326 -FRLKQEPVKVQPVVESAVREMEHRATDRQLRIDKISD---VEVVGDKDALKQLVLILLD 381

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+T     + V V     +   I + D G GI++  +P +   F +   +  S   G
Sbjct: 382 NAIKYTRNQDSIQVEVEKDDSQ-AVIRVADTGIGISQEHLPHIFERFYRADTSRSSD--G 438

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL IA+ I+  H G   + S++ +G      LP  +
Sbjct: 439 TGLGLSIAKWIVEQHCGSISVASEIGKGSIFEVKLPAKK 477


>gi|226304477|ref|YP_002764435.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4]
 gi|226183592|dbj|BAH31696.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4]
          Length = 483

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 9/321 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L    L   + +       A          ++++        A      +     ++ V 
Sbjct: 167 LVGLQLGIGLVVLLILGGGAYFVVRRSLRPLVEVEETAAAIAAGDLHRRVPERDDRTEVG 226

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            LS     + ++A+++ A + ++ + + A        RF+   SHELRTPL  I GF+E+
Sbjct: 227 RLS--VALNGMLAQIQHAFAATEASEESARRSEEKMRRFVGDASHELRTPLTTIRGFAEL 284

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                M           +  I      +  L+ ++L L+R++  R  L    + L+ +  
Sbjct: 285 YRQGAMTDTET-----LMNRIEGEASRMGLLVEDLLMLARLDEQR-PLENKPVDLLAVAA 338

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           + +   +  A ++ +E+     P L  V  DE  +RQV+ NL+ NA+K T    +V V V
Sbjct: 339 DSVQAARAIAPDRTVELQMTGGPGLPEVQGDEARLRQVVANLVGNAIKHTPPDAQVTVRV 398

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
           G T      + + D G G+++ +   +   F +   +      G GLGL I  +++A H 
Sbjct: 399 GTTE-NSAVVEVSDTGQGLSDEDAARIFERFYRADTSRTRETGGAGLGLSIVSALVAAHD 457

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G   + + L +G      LP 
Sbjct: 458 GTVSVETSLGQGTTFRVELPR 478


>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 915

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 418 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 473

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 474 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLG 533

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 534 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 591

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 592 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 651

Query: 469 IAILPN 474
              +P 
Sbjct: 652 TLRIPL 657


>gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34]
 gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34]
          Length = 1309

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 12/243 (4%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AK  FLA MSHE+RTP+N +LG +E++   ++ P  + T    +G +  S   LL +++
Sbjct: 796  RAKDSFLAMMSHEIRTPMNGVLGLAELLSHTSLTPEQSAT----VGMMGDSASALLQILD 851

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
            +ILD S+IEAGR ++    + + ++    I +L  RA EK + +   +   ++  V  D 
Sbjct: 852  DILDYSKIEAGRIDIESRPLDIRELCDCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDS 911

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVL 421
              +RQV+ NLLSNA+KFT   G V V+          +     + D G GI       + 
Sbjct: 912  VRLRQVLFNLLSNAIKFT-ESGMVSVSAEVVQETETAQTLRWRVTDTGIGIEPQNQSRLF 970

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLN 479
              F Q   +      G GLGL I + ++   GG+  ++S+   G +V     LP      
Sbjct: 971  DPFVQADTSTTRRFGGTGLGLAICRRLVQLMGGRITLKSEPGIGTQVEVELSLPVKERRY 1030

Query: 480  FIP 482
              P
Sbjct: 1031 SKP 1033


>gi|20387468|gb|AAK54087.2|AF362368_1 histidine kinase DhkF [Dictyostelium discoideum]
          Length = 1548

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 119/274 (43%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + +     +  +    +L  + E          E R  A      KS+FLA++SHE+RTP
Sbjct: 712 IVRDITDQIRLKEMNIELQKKSELEQKRNQELMEARDLALTATKIKSQFLATISHEIRTP 771

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I+   E++   +     N    +    I  S + LL++ ++ILD S+IEA + EL  
Sbjct: 772 LNGIITMGEMLLSTS---PLNTEQHDIAETIFGSSELLLSITSDILDFSKIEASKLELEM 828

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
                I  +      + +    K IEI   +D  +   +  D   + Q++LN+ +NAVK+
Sbjct: 829 IEFDFIGCLEGIGKTIGVSITNKPIEIAFLMDTDIPHRLIGDPNRLIQIMLNMGTNAVKY 888

Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G    R+ V     +     ISI D+G GI E +   +   F Q   +      G G
Sbjct: 889 TDRGHIVFRISVISREQNRCKIKISIDDSGIGIGEDQRAHLFEPFHQIDSSSTRKYGGSG 948

Query: 440 LGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472
           LGL I+  +    GG+ ++  SK   G      L
Sbjct: 949 LGLAISSKLAKLMGGEVILERSKPGVGSLFSVTL 982


>gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 678

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 269 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 328

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L   ++ L + VRE +  
Sbjct: 329 EEGHTTYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNT 385

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V++     
Sbjct: 386 QELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIER-DD 444

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 445 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 504

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 505 TSGGRGKGATFTVRLP 520


>gi|66819379|ref|XP_643349.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74857212|sp|Q551X9|DHKF_DICDI RecName: Full=Hybrid signal transduction histidine kinase F
 gi|60471411|gb|EAL69371.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1109

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 119/274 (43%), Gaps = 11/274 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + +     +  +    +L  + E          E R  A      KS+FLA++SHE+RTP
Sbjct: 273 IVRDITDQIRLKEMNIELQKKSELEQKRNQELMEARDLALTATKIKSQFLATISHEIRTP 332

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I+   E++   +     N    +    I  S + LL++ ++ILD S+IEA + EL  
Sbjct: 333 LNGIITMGEMLLSTS---PLNTEQHDIAETIFGSSELLLSITSDILDFSKIEASKLELEM 389

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
                I  +      + +    K IEI   +D  +   +  D   + Q++LN+ +NAVK+
Sbjct: 390 IEFDFIGCLEGIGKTIGVSITNKPIEIAFLMDTDIPHRLIGDPNRLIQIMLNMGTNAVKY 449

Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G    R+ V     +     ISI D+G GI E +   +   F Q   +      G G
Sbjct: 450 TDRGHIVFRISVISREQNRCKIKISIDDSGIGIGEDQRAHLFEPFHQIDSSSTRKYGGSG 509

Query: 440 LGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472
           LGL I+  +    GG+ ++  SK   G      L
Sbjct: 510 LGLAISSKLAKLMGGEVILERSKPGVGSLFSVTL 543


>gi|326800055|ref|YP_004317874.1| histidine kinase [Sphingobacterium sp. 21]
 gi|326550819|gb|ADZ79204.1| histidine kinase [Sphingobacterium sp. 21]
          Length = 1387

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 13/309 (4%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAK 249
            +   + +   I   L     + +     K  L  E   AK L ++ RK AE   + +  K
Sbjct: 804  IYAYMVYMIVIGGVLLYIRHRGIKKLEAKFALEQERLQAKQLLEQERKEAEHLHQLDRMK 863

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             +FL ++SHE RTP++ I+G         +           +  I R+ + LLNL+N++L
Sbjct: 864  IKFLTNLSHEFRTPISLIMGPV----DNLIAQTQEPGQSSQLNLIKRNARRLLNLVNQLL 919

Query: 310  DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            D  ++E     L  +  + +  + E        A  K I+       S  S W D   + 
Sbjct: 920  DFRKMEEKELRLQCTPGNFVSFIEEISDSFNDLASRKKIDYAFYTSLSSVSAWFDHDKIE 979

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTS 423
            +++ NLLSNA KFT  GG + + +              ++++KD+G GI +     +  S
Sbjct: 980  RILFNLLSNAFKFTPEGGAISLNLEKIESGANNEFVSLHVAVKDSGIGIPKEAQQRIFDS 1039

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            F Q         QG G+GL IA++ +  HGG+  + S+  +G      +   RV + + E
Sbjct: 1040 FFQYDSGATILNQGTGIGLSIARTFVDMHGGKLQVISEPGKGSIFSFDVNLKRVTSDLDE 1099

Query: 484  DNHESTQYK 492
                + + K
Sbjct: 1100 TVSAAYETK 1108


>gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 773

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 159/444 (35%), Gaps = 18/444 (4%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           +   + ++   +  +A +       P      ++        +        S +      
Sbjct: 50  VLLHAAVVGAAIGPLAALVLVGGPPPARLAAVVLAFLAGGLAVWRLTADDRSRLLSAAAG 109

Query: 105 VWRIWLLVGQIAIGLCWTLLTL-------VEPGTWTPEYLTIYKSATLLI---ALSISAL 154
                  + +    L  T   L               + +    +A L+I   A ++   
Sbjct: 110 RAAEIAGLRRRLEALEDTAWELKESDERQASILQALGDIVIRRDAAGLVIYANAAALETF 169

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               +P        P        A             +       +        + +   
Sbjct: 170 PPAHMPEIGRPLMLPRAAPREAGADAPRDDFAFGDLRLDTVHGPRWFSRLDVTVRDDATE 229

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                     + +  + +      R+ AE  N AKSRFLA++SHE+RTPLN ILG + ++
Sbjct: 230 TPVVQTVLRDVTDRRLIEEDLLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAALL 289

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P        YI  +  SG+ LL LI+E+LD SR EAGR  +  +  +L  +V  
Sbjct: 290 SDTRLTP----EQAAYIKALESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVEN 345

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVT 392
              +L  RA  K +EI  ++ P L  +V  D   +RQ++ NL  N +KFT  GG  V V 
Sbjct: 346 VAELLAPRAHAKGLEIAVRLHPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVD 405

Query: 393 VGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                  G    I+++D G G    +   +   F Q          G GLGL IAQ ++ 
Sbjct: 406 GRPAPDGGTLLDIAVRDTGIGFRPEDAERLFGEFEQVDHGPARRYGGTGLGLAIAQRLVT 465

Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474
             GG     S    G     +LP 
Sbjct: 466 LMGGTIAATSAEGAGAVFRVVLPV 489


>gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1629

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             R++ E     K+ F+  +SHELRTPL  I     +I+         E  +  I      
Sbjct: 1395 ERQKLE---HIKNEFIGIVSHELRTPLTGIQMSLGLIKTGVYD-RKPEKARRMIEIALLD 1450

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               L+NL+N+ILDL RI++GR  L ++     D++++ +  +Q  A ++ I +     P+
Sbjct: 1451 THRLVNLVNDILDLERIDSGRAVLEKTVCKAADLIQQAVDGIQAIATQQQISLIIT--PT 1508

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
               VWA    + Q + NLL NA+KF+     +H++    +       ++D G GI   ++
Sbjct: 1509 DVKVWAAPDTIIQTLTNLLGNALKFSPPHSTIHLSAENQAD-FALFQVRDRGRGIPADKL 1567

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F Q   +    + G GLGL I QSI+  HGG+  + S L EG      LP  
Sbjct: 1568 ELIFGRFQQVDASDSREKGGTGLGLSICQSIIERHGGKIWVESILGEGSTFFFTLPLA 1625


>gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 625

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 123/243 (50%), Gaps = 3/243 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  F A +SHELRTPL AILG+ E++  E  G   +E    Y+  + R+ Q LL 
Sbjct: 368 EAERVKEEFFALVSHELRTPLTAILGYVELVLGED-GATIDEEQHRYLQIVERNAQRLLR 426

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L  +++E+G   L   ++ L  +  E +   + RA++  I +  +I P +  V  
Sbjct: 427 LVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTAQIAPLVPCV-G 485

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+SNA+KFT  GG+V V +   +     I I D G G+   E   +   
Sbjct: 486 DRDRLAQVLDNLISNALKFTPSGGQVGVRLSA-ADGEARIDISDTGVGVPAEEHARLFDR 544

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F + S A   A  GVGLGL I ++I+A HGG   + S++  G      LP   V    P 
Sbjct: 545 FFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLPLRAVRASDPA 604

Query: 484 DNH 486
            + 
Sbjct: 605 SSS 607


>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 896

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I+  +  +    + R  AE     K  FLASMSHE+RTP+N I+G  E+++   +  
Sbjct: 335 NQDISAQQQQEQALIDARMAAEHAARVKGDFLASMSHEIRTPMNGIMGMLELLKNTELTT 394

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L      + +     S + LL LIN+ILD S+IEA R  L E   +L  ++ E    L  
Sbjct: 395 L----QAQRVNIALSSSKSLLVLINDILDFSKIEADRLILEEIDFNLRSLLGELTEALSQ 450

Query: 342 RAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--- 397
            A+ KNIE+     +     V  D   +RQ+I NL+SNA+KFT   G V + V       
Sbjct: 451 LAESKNIELVLDTVEVHQDMVKGDPSRIRQIITNLISNAIKFTHQ-GEVLIRVSLQEYSL 509

Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            + Q   S+KD+G GI +G+   +  +F Q   +      G GLGL I + +     GQ 
Sbjct: 510 DQWQVNFSVKDSGIGITQGQQKKLFDAFSQADSSTTREYGGTGLGLAIVKKLCEAMDGQI 569

Query: 457 LIRSKLREGVEVI 469
            ++SK+  G E  
Sbjct: 570 RVKSKMNIGSEFY 582


>gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 746

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 326 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 385

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 386 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 440

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 441 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELPHLPDELGVIADRQRLVQVLLNLLS 500

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++     +S+ D G GIA   +  +   F +       + +G
Sbjct: 501 NAIKYNRPDGQVRIEVDRSAEH-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 557

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 558 TGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALPFVAVHAPT 601


>gi|23100906|ref|NP_694373.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22779140|dbj|BAC15407.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 612

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL  +  + E +        N E    ++    +    ++
Sbjct: 376 QKMEQERRDFVSNVSHELRTPLTTMKSYLEALSDGAW--ENKEIAPRFLDVTQKETNRMI 433

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++N++L LS++++    + +        + + +   ++  + ++I + + I  + + VW
Sbjct: 434 RMVNDLLQLSKMDSDELPMHKQREEFTSYLYQVLDRYEMN-KPESIHMEKNIPNTKAYVW 492

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV+ N+++NA+K++  GG++ V +         +SI+D G GIA  ++  +  
Sbjct: 493 MDRDKITQVLDNVITNAIKYSPDGGKIRVKLDIRR-HYLLVSIQDQGMGIAYDKLDKIFE 551

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL I + ++  H GQ   +S   +G  ++  LP 
Sbjct: 552 RFYRVDKARNRKLGGTGLGLAITKELVEAHHGQIWAQSSEGKGTTILFTLPL 603


>gi|320333198|ref|YP_004169909.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
 gi|319754487|gb|ADV66244.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
          Length = 523

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 144/376 (38%), Gaps = 20/376 (5%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAI 179
             L  +      P  + +          +     +      V+++     V   +    +
Sbjct: 153 AALPALYQQAARPVRIFVALGDYSYAPSASLGSGSEKTTAVVYVARDLTNVYETIDNLRL 212

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-------LSCQAEKDDLIAELEVAK 232
           ++  V  I   G    A  F       L +            L+ +  + D   E++   
Sbjct: 213 ITFVVFLIGALGAGVGAYVFSGQALKPLRQVQQAAEGIGGRTLAQRVPEPDTGDEVQSLA 272

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +    R E    A+ RF +  SHELRTP+ AI G +  +          +  +E +G
Sbjct: 273 RALNGMLDRLEASFEAQRRFTSDASHELRTPVTAISGHAGYLLRR---TQPTDQQRESLG 329

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I      L  LI  +L+L+R ++G  +L    +     +++    L+  AQ +   +  
Sbjct: 330 IIKSEADRLTGLIGSLLELARSDSGVLQLRLQPVLSCLFLQDIARELRPLAQAQGATLT- 388

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
             +        D   +RQV++NL+SNA+K  +    + +               +S++D+
Sbjct: 389 -PEGEEIPFQGDPDRLRQVLINLVSNALKAGSH--AITLRSARDPNPSGPPSVRLSVQDD 445

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGIA   +  +   F +   +    + G GLGL I +SI+  H GQ  + S++  G  V
Sbjct: 446 GPGIAPEHLGRLFDRFYRVEESRSRDQGGAGLGLAIVKSIVDAHHGQIWVESEVGVGTTV 505

Query: 469 IAILPNTRVLNFIPED 484
              LP   V +  P+D
Sbjct: 506 HVRLPIGNVPDLDPDD 521


>gi|256423935|ref|YP_003124588.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256038843|gb|ACU62387.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1016

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 13/251 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N+AKS FLA+MSHE+RTPLN ++GF+E++    +    NET  +Y+  +++S   LL++I
Sbjct: 376 NMAKSEFLANMSHEIRTPLNGVIGFTELVLKTDL----NETQHQYLSIVNQSANALLSII 431

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364
           N+ILD S+IE+G+ EL      L +   +   ++  +AQ K +E+   +   L    W D
Sbjct: 432 NDILDFSKIESGKLELDIDKYDLYEFSSQVSDIVSYQAQHKGLEMLLNVSTQLPRFAWFD 491

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPT 419
           E  ++Q+++NLL NAVKFT   G + + V                ++D G GI   +   
Sbjct: 492 EVRLKQILINLLGNAVKFT-SNGEIELKVHPLEFLEDDKAKIRFEVRDTGIGIKPEKQLK 550

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  +F Q   +      G GLGL I+  ++A  G +  I S + +G      +  T V  
Sbjct: 551 IFEAFRQEDASTTKKYGGTGLGLTISNKLLALMGSELHIESGVSQGSTFYFDIVLTTV-- 608

Query: 480 FIPEDNHESTQ 490
             P +N ++ +
Sbjct: 609 EAPAENQDNLE 619


>gi|172035804|ref|YP_001802305.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697258|gb|ACB50239.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 678

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L     KE++   +     L  
Sbjct: 413 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTETERKEFLETANHETDRLTR 471

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ +     + + L  ++ + +   QL A++K + + ++++P+L  +  
Sbjct: 472 LVNDVLDLSRLESSK-TYHLNGVDLSQLIEQTLRTYQLNAKDKELVLNKEVEPNLPLILG 530

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
               + QV+ NL+ NA+KFT  GG + +           +       + I D G GIA  
Sbjct: 531 HYDLLLQVMTNLVGNALKFTPSGGIIVIRAYHFKTKSKQFNDKSCVRVEISDTGIGIAPE 590

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+  H  Q  + S++  G      L
Sbjct: 591 DQAAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTFWFDL 646


>gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
 gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
          Length = 498

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ +I GFSE +        + +    ++  I++    L  
Sbjct: 271 RLEQIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLISFLEIIYKESNRLQM 328

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L+LS+IE   + ++   + L D++     +   R  EKN+     ID  +  V  
Sbjct: 329 LIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDV-QVMG 387

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q++ NL++NA+ ++     V + +      G  I I+D G GI + EI  V   
Sbjct: 388 DANRIIQIVTNLITNAITYSPENTTVSIRLKENETYGI-IEIEDQGIGIEKHEIARVFER 446

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL I + ++  H G+  + S++  G  +I ++P 
Sbjct: 447 FYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTMIVMIPK 497


>gi|326623485|gb|EGE29830.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 936

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 285 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 338

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 339 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 398

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 399 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 454

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 455 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 514

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 515 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 572

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 573 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 628

Query: 475 TRVLNFIP 482
                  P
Sbjct: 629 QEYQPPQP 636


>gi|209809753|ref|YP_002265292.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208011316|emb|CAQ81766.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 578

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 131/272 (48%), Gaps = 7/272 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +    ++  K     +E        +     + + ++RAE    A   F+A ++HELRTP
Sbjct: 169 SETWHQTIEKQFCLFSEMLSAAFVRQQLLENTIKEKQRAENSEQATRDFVAMINHELRTP 228

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN +LG +E++E   +        +  +  IH++G+ L  +IN++LD S++ AG  +LS 
Sbjct: 229 LNGLLGSAELMEDTNITQY----QQTLLMTIHQAGEMLRVIINDLLDFSKMNAGMLQLSI 284

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           +  S   +++    M   + +E  +E    I+ +L   +  D   ++Q+++NL+ NA+KF
Sbjct: 285 TQFSPQILIQTIEQMFLHQIEETRLEFVVGIENTLPDGLSGDIDRIQQILVNLIGNAIKF 344

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G +  +  W        ++ D+G GI   +  T+   F Q   + +   +G GLGL
Sbjct: 345 TKE-GEIRFSASW-KDNVLCFTVSDSGCGIPLDKQSTLFDPFTQVDNSSQRQFEGTGLGL 402

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I +S++    G   + S+L +G      +P 
Sbjct: 403 SICKSLIDKMEGTLTLESELGKGSVFSVEIPL 434


>gi|52784412|ref|YP_090241.1| YwpD [Bacillus licheniformis ATCC 14580]
 gi|319648656|ref|ZP_08002867.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52346914|gb|AAU39548.1| YwpD [Bacillus licheniformis ATCC 14580]
 gi|317389075|gb|EFV69891.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 1031

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 172/452 (38%), Gaps = 28/452 (6%)

Query: 41  HVESLFRVSPILPLFV----LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
              ++  +  ++ L +    ++     +           + + L   A  L L       
Sbjct: 237 FFSTMCLLFSVIVLLIGRERMIFLLFPSISFSALSVVRATTMVLVSMAVFLYLYFAYKEI 296

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
                    W    ++   A  +   ++  +  G        ++    +   + I+ +  
Sbjct: 297 VS-----KKW----IIAATAFSVLVLMIDFITWGYTDRLAYILHSVLAVTTLIYITYVFA 347

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                 +  S +  + A+S  A + +  +         +  S +   +         I++
Sbjct: 348 ISAVRKMKGSLYLTIAAISMSAFVILTTVSAYSGKRGFSFNSLYAVPS---------IIA 398

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A    +  +   A   ++    +    N  K  F+A  SHE +TPLN+++   + +  
Sbjct: 399 LLAAVLMMAQQFAGAFRENEILSLKLLRMNRLKDEFIAKTSHEFKTPLNSMINICQTLLA 458

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                   E  KE +  + R G  L +L+N+ILDL +++ G  ++    +     +   +
Sbjct: 459 RKRKRTLEEE-KENLQLVIRMGYRLSSLVNDILDLEKMKQGMLQIQAVPVDAHSAISTEM 517

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +L ++ KN+ I  ++   L  V ADE   RQ++ NL+ NA+K+T   G++ ++    
Sbjct: 518 DFYRLLSKNKNVRIVNRVPSGLPLVLADENRFRQIMTNLVDNAIKYTPE-GQITLSAERL 576

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I++ D G GI +     +  +F Q        + G GLGL I + ++    G+ 
Sbjct: 577 DQEKVKITVADTGVGIPKAVRQLIFEAFQQAKN---HKDDGAGLGLSIVRQLVQLQNGEI 633

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+  +G      LP  +  + +P+   E+
Sbjct: 634 WVESEEGKGSAFHFTLPVAK-NDPLPDAKKEN 664



 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 375  LLSNAVKFT----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            L+ NAV         GG + +T    S    YI I+DNG G+   +   + +S    S+ 
Sbjct: 922  LVENAVHHGISKKRGGGWIKLTAKKESENRYYIKIEDNGIGMPPEKQQDIFSSHFTHSVG 981

Query: 431  IKSAEQGVGLGLPIAQSIMANH--GGQFLIRSKLREGVEVIAIL 472
            +K+          I + +   H  G +  I S    G  V  ++
Sbjct: 982  MKN----------INRRL--KHFCGSELNIESTPDSGTAVSMVI 1013


>gi|34557363|ref|NP_907178.1| hybrid histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34483079|emb|CAE10078.1| HYBRID HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1019

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 147/317 (46%), Gaps = 12/317 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT---YITYHLFKSNVKILSCQAEK 221
           +S  P+ ++ +        +L +S+                      +  +++L   +  
Sbjct: 472 ISTLPLDLSETLAPQGIKSILAVSIFAQGRLYGYLGLDSCRKKREWSEEEIELLRSISTI 531

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                E    +    E R +A++ NLAKS FLA+MSHE+RTPLN+ILGF+E+++      
Sbjct: 532 IAGAIERRGWERSEKEQRIQAQQANLAKSEFLANMSHEIRTPLNSILGFAELLK---PAL 588

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             NE +  Y+  I  SGQ+LL +I++ILDLS+IE+G+ E+  S   +   ++E   +   
Sbjct: 589 EKNERFAGYLESIATSGQNLLLIIDDILDLSKIESGKMEIHPSPTDIKAFLKELESLFLP 648

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
            A +KN+     +   +   +  DE  +RQV+ NLL NA KFT   G+V  +  +     
Sbjct: 649 SALKKNLSYELNLQEGIPDFLVMDEIRLRQVLFNLLGNAFKFTHE-GKVSCSFRFQRQSA 707

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                +I + D G GI   +   +   F Q          G GLGL I + ++   GG  
Sbjct: 708 SKITLFIEVSDTGIGIPLSQQSRIFEPFTQQDAQNTRKYGGTGLGLTITKRLVEIMGGDL 767

Query: 457 LIRSKLREGVEVIAILP 473
            + S+ + G      LP
Sbjct: 768 TLESRPKWGSTFFITLP 784


>gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 775

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELPHLPDELGVIADRQRLVQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++ R   +S+ D G GIA   +  +   F +       + +G
Sbjct: 530 NAIKYNRPDGQVRIEVDRSAER-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 587 TGLGLALSKSMLEMMNGTLSVQTTQNEGCCFTLALPFVAVHAPT 630


>gi|331270613|ref|YP_004397105.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127163|gb|AEB77108.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 710

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 131/257 (50%), Gaps = 13/257 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG---FSEVIELETMGPL 282
              ++   + +  + R E        F A++SHEL+TPLN IL    + E++  +     
Sbjct: 437 ENSKLLNEMLEYQKLRVE--------FFANISHELKTPLNLILSAVQYVELVNNKNFD-F 487

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N++++ +Y   I ++   L+ ++N I+D+++I++G +++     +++++V +  +     
Sbjct: 488 NSDSFCKYTNIIKQNSYRLVRIVNNIIDITKIDSGYFQIHPENYNIVELVEDICLYCASY 547

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K+++     +     +  D   M ++ILNLLSNA+KFT  GGR+ V + +       
Sbjct: 548 IHSKDLDFIFDTETEEKIISCDALIMERIILNLLSNAIKFTQPGGRITVNI-YDKDNEIQ 606

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS+KD G GI E     +   F Q   ++    +G G+GL + ++ +  H G   ++SK+
Sbjct: 607 ISVKDTGIGIPENRQDLIFERFIQVDKSLSRNHEGSGVGLSLVKAFVDLHNGSIEVKSKV 666

Query: 463 REGVEVIAILPNTRVLN 479
             G E +  LP + + N
Sbjct: 667 GHGSEFLITLPVSNIAN 683


>gi|326939024|gb|AEA14920.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 306

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 13/310 (4%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           + L   P+ +A+    I     + I+    +   LS    +  HL   +       + +D
Sbjct: 1   MGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITVSSED 56

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++    +    +++      E E++ +  FLA++SHELRTPL+ I G+SE I        
Sbjct: 57  EIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG- 111

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++    IH+    +  L++++LDL+++E   + L +  I    ++ + +   +++
Sbjct: 112 --PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIK 169

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             EK + I   ++P +  V  DE  M+QV+ N+L NA+++T   G + +T+         
Sbjct: 170 FIEKELHISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-DDYCE 227

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + IKD G GI    +  +   F +   A      G GLGL I + I+  HGG + I S+ 
Sbjct: 228 LKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKIESEK 287

Query: 463 REGVEVIAIL 472
            +G  VI  L
Sbjct: 288 DKGTTVIIKL 297


>gi|319902564|ref|YP_004162292.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319417595|gb|ADV44706.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 622

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  +L+ ++    E ++RAEE +  KS FLA+MSHE+RTPLNAI+GFS+V+     G  
Sbjct: 377 KLKDDLQESEGALLEAKERAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGS 433

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  + Y   I  +   LL LIN+ILD+SR+EA R +      ++  + R+ +  +  +
Sbjct: 434 SEEEQRSYFEIIKTNSDLLLRLINDILDVSRLEADRVKFKSEDCNVALVCRQIVASVA-Q 492

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQ 401
           A++ +     +       +  D + ++QV++NLLSNA KFT   G + + +         
Sbjct: 493 ARKSDNRFLFECGSDSVKIRTDVQRLQQVVINLLSNADKFT-KNGTITLKLEINRDGNMA 551

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI   +   V   F +         QG GLGL I +      GG+  I   
Sbjct: 552 VFSVTDTGCGIPLDKQGLVFERFEKL----NEYMQGTGLGLSICKLTTEKWGGKIWIDPT 607

Query: 462 LREGVEVIAILP 473
              G   I   P
Sbjct: 608 YTNGARFIFTHP 619


>gi|302392025|ref|YP_003827845.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204102|gb|ADL12780.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 399

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 2/245 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++R E+ N  ++   A++SHEL+TPLN +    ++++L      + + Y EY+  I R+ 
Sbjct: 134 KERLEQ-NRLRTELFANLSHELKTPLNLMFSGMQLLKLNLEKNEDEDKYMEYLNTIKRNT 192

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL L+  ++D++++++  Y+LS     ++ +V +    ++  A+ K  E+    +   
Sbjct: 193 NRLLKLVENLVDINKLDSRSYDLSFQNCDIVSLVEKVFFSVKEYAENKKRELEFDSEIEE 252

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D   M +V+LNL SNA+KFT  G ++ + +    G    IS+KD G GI + +  
Sbjct: 253 KVIACDSFNMERVMLNLFSNAIKFTDKGDKISMYLS-DEGDNISISVKDTGIGIPKDKQE 311

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   FGQ   +     +G G+GL +   I+  H G+  + S+   G E I  LP  ++ 
Sbjct: 312 IIFERFGQVDKSFTRNNEGSGIGLSLVNLIIERHDGEIDLHSEYGSGSEFIIKLPAQKLA 371

Query: 479 NFIPE 483
               E
Sbjct: 372 QEDAE 376


>gi|300770375|ref|ZP_07080254.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762851|gb|EFK59668.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 586

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 179/447 (40%), Gaps = 26/447 (5%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           ++  +  I      ++ N+   F       + ++I+L +Y   L+L       +     +
Sbjct: 23  AILSICLIASGLSNIIFNLNIVFPIGINLLILTVISLHLYILKLAL------QNKATERI 76

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             W          + + W L   ++          +      L          F L  ++
Sbjct: 77  KFWY--FCYLTGCLAVIWALNNGLDSSIPLFFVFYLMAGLLSLSDPYRLRFGIFFLIVSL 134

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F                S     + L       L   T +     +          EK  
Sbjct: 135 FCLIIDHFFPQFIVPYASQKEKHMDLLFSFVLTLVISTIMISSYKRV------YDYEKKV 188

Query: 224 LIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           LI + ++   ++     +++ AE    AKS+F+ +MSHE+RTPLN I+G  ++++   + 
Sbjct: 189 LILQKKMLKLSQKELIASKEVAEAATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTKL- 247

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              ++  +  I ++  S   L +L+ ++LD+SRIE  ++E++ +  +L   +     ++ 
Sbjct: 248 ---DQNQQLLIENLQASSHILSDLVTDLLDISRIETNKFEINYTTFNLNQSLTSLKHVVD 304

Query: 341 LRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              + K +++  +   +    +  DE   +Q++LNLLSNA+KFT   G + V + +    
Sbjct: 305 PMLKSKGLKLNIRTAENTPPELITDEARFKQILLNLLSNAIKFTLK-GNITVYISYILFH 363

Query: 400 GQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            +Y+    +KD G GI +  I  +   F Q         +G+GLGL I Q ++   GG  
Sbjct: 364 DKYVLECKVKDTGIGIKKENIARLFDQFSQIEEPQIPVNKGIGLGLAICQRLLHILGGHI 423

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPE 483
            + S    G      LP     N IP+
Sbjct: 424 EVESVYGIGTTFTFCLPVLLPQNQIPQ 450


>gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 583

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 4/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHELRTP+  I G++E +    +   N     +++  ++     L  
Sbjct: 356 QLEKIRRDFVANVSHELRTPVTIIKGYAETLIAGAL--ENPSQAAKFVKIMYSHADRLAV 413

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI+++L LS++E+G   L   ++++ DI    + +L+ + +E++I +        ++V A
Sbjct: 414 LISDLLTLSQLESGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGAANVLA 473

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QVI+NL+ NAVK+T  GG V +T          I+++D G GI   ++P +   
Sbjct: 474 DPVRLEQVIVNLVDNAVKYTPAGGSVTLTAA-EDDGRVVIAVRDTGIGIPPKDLPRIFER 532

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   A    E G GLGL I + I+  HGG     S   +G      L
Sbjct: 533 FYRVDTARSRDEGGTGLGLSIVKHILQLHGGTVSAESS-GQGSAFFVTL 580


>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
 gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
          Length = 1128

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/360 (21%), Positives = 145/360 (40%), Gaps = 6/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
                W L+              + K   + +  +I  +       + F++   + +  +
Sbjct: 329 LNETNWALVAETPEAIAFASVKQLEKLFVIAMLTAIVLVVIASHYLSNFITSPLLKLTWA 388

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            +      +    ++      +         + +S  + +     ++    ELE      
Sbjct: 389 AERASGGDLEPSIISADRKDEIGRLALSFERMRRSIKEKIELIKSQNQ---ELEQNLVTI 445

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  +  +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+    +K  +  I 
Sbjct: 446 KKQNEELQLANKLKDEFLATTSHELRTPLHGMIGIAEAMISGANGPIG-ANHKYQLDIIV 504

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++  SAISL    +  + +      EK I I  ++ 
Sbjct: 505 NSGQRLAGLVDDLLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRIINQVL 564

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             L  V AD + + QV+ NL+ NA+K+T   G++ ++          + + D G GI   
Sbjct: 565 EPLPYVSADPQRLEQVLYNLVGNAIKYTNE-GKIVLSATAM-DDHIRVQVVDTGQGIPAQ 622

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 623 QLEHIFEPLVQAGHDSGHYRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLPLA 682


>gi|301384781|ref|ZP_07233199.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060725|ref|ZP_07252266.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130813|ref|ZP_07256803.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 1123

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 167/356 (46%), Gaps = 15/356 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G   P +   Y    L   L +  +       A+ L +  V   L  Q+  + H+L ++ 
Sbjct: 556 GKMLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAF 615

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRA 242
                T   F   + + +  +    L  Q E +         I   E       + ++ +
Sbjct: 616 LKAFLTVCVFAGVLAWWVVLTRESRLVAQEESERQTSLLIQEIDAHEKTDQALQKAKEAS 675

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKSR++  +SHELRTPLN+ILGF+++++ +T  P     +++ +  I RS  HLL
Sbjct: 676 EAANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLL 732

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           +LIN +LD+++IEAG+ +L  + I   + + +   M    AQEKN+    +++  +   V
Sbjct: 733 SLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFAGTAQEKNLGFRLELEGRMPMVV 792

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             DEK +RQ+++NLL NAV FT   G V + V +         I D+G GIA  +I  + 
Sbjct: 793 RGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDSGIGIAPEQIERIF 850

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             F +G         GVGLGL I + + A  GG   + S   EG      L  + V
Sbjct: 851 QPFERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 904


>gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 811

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 4/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E   A     E R  AEE + AKS F+A++SHELRTPL AI+GFSE+     +    +
Sbjct: 558 ITEFREADRTMREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSEL---GMVRGRAH 614

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E      GDIH +GQ +L L+N++LD+S+IE+           L  +VRE    +     
Sbjct: 615 ERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDPLLA 674

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            + + +   +         D    +QV+ N+L+NAV+F+  G  + V     +     ++
Sbjct: 675 RRRLHLDLALSEGPLVAKVDPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQIVVA 734

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D+GPGI  GE+  +  +F Q S   K    G GLGL I + I+  HGG     +    
Sbjct: 735 VRDHGPGIPPGELEKIFEAFVQSSK-TKDGSGGTGLGLAICRKIVEAHGGSIQAENADGG 793

Query: 465 GVEVIAILPNT 475
           G      +P  
Sbjct: 794 GSRFTIAVPAR 804


>gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 758

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 10/250 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    E+R+ AE+  L K  FL +MSHE+RTPLNAI+GFS+++  E     +N
Sbjct: 515 IQELKDHEQELIESRELAEQAEL-KQSFLNNMSHEIRTPLNAIVGFSDMLANEP--EFSN 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I+ + + LL L+ ++L+LSRIE+G    +    S+  ++ +      L  +
Sbjct: 572 EERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFTFQRESVHRLLDDVYQTHSLLIR 631

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYI 403
              ++  +   P    V  D   + QV+ N L+NA KFT  GG + +     +     ++
Sbjct: 632 PP-LQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFT-KGGSIRLGYCCPSGMSEVHL 689

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   +   F +         QGVGLGL I   I+   GG+  +RS+  
Sbjct: 690 YVEDTGIGIPHSEQKMIFERFYK----RSEFSQGVGLGLSICVLIVEKMGGRIELRSEEG 745

Query: 464 EGVEVIAILP 473
            G     +LP
Sbjct: 746 RGSRFTVVLP 755


>gi|229515810|ref|ZP_04405269.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
 gi|229347579|gb|EEO12539.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
          Length = 572

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           P+  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PIYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKQSASSSQQI 448


>gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator
            [Maribacter sp. HTCC2170]
 gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Maribacter sp. HTCC2170]
          Length = 1356

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 10/302 (3%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
                 L+++L  +     +++ Y+ Y      +     + +    +A  E A        
Sbjct: 785  WEQAPLEMNLEILPPWWTTWWAYLIYAGIAVAIADRFYRFQLSKKLAVSESA-------- 836

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             R +E N  K+    +++HE RTPL  ILG ++ +E E +           +  I R+G 
Sbjct: 837  -RLKEVNQLKNSLYDNITHEFRTPLTVILGMTDALESE-LNTKTTPPINNAVEMIRRNGN 894

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +LL+L+NE+LDLS++E+G  E + + I+++  ++      Q  AQE  I      +    
Sbjct: 895  NLLSLVNEMLDLSKLESGHLETNMAQINVVPFIKYLGESFQSFAQEDEIHFTVYSEVDEL 954

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             +  D   +  +I NLLSNA+KFT   G++ + +   +     I + D G GI++ E+P 
Sbjct: 955  MMDVDTTKLSTIISNLLSNAIKFTPALGKIVLHLHNENNTHLIIKVSDTGTGISKDELPH 1014

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   F Q    +     G G+GL + + ++   GG+  + + + EG     ILP T+   
Sbjct: 1015 IFNRFYQADSTVTRKRDGTGIGLALTKELVNLLGGEISVTTAVDEGSVFKVILPITQNAE 1074

Query: 480  FI 481
             I
Sbjct: 1075 KI 1076


>gi|296450077|ref|ZP_06891839.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296878458|ref|ZP_06902464.1| probable sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261085|gb|EFH07918.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296430542|gb|EFH16383.1| probable sensor histidine kinase [Clostridium difficile NAP07]
          Length = 912

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE--- 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++         +   
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRSEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    +    +++ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVISEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|255656477|ref|ZP_05401886.1| putative sensor histidine kinase [Clostridium difficile QCD-23m63]
          Length = 912

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 137/250 (54%), Gaps = 7/250 (2%)

Query: 232 KSLSDET-RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE--- 285
           K  S++  ++  E    +  K+ F A+MSHEL+TPLN I   +++++         +   
Sbjct: 635 KKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVISSSNQLVDSFYRSEKIKDYNN 694

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             K ++  + +S   L  LIN I+DL+++E+G Y L  +  +++ ++ +  + ++  A  
Sbjct: 695 NIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALR 754

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I+I    +    +++ D+  + +++LNLLSN +KFT  GG ++V++ +   +   IS+
Sbjct: 755 KDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDK-VIISV 813

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + ++  +   F Q    +    +G G+GL I +++++ HGG   + S++ +G
Sbjct: 814 KDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVISEVNKG 873

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 874 TEFLISLPMK 883


>gi|153827167|ref|ZP_01979834.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|149738929|gb|EDM53251.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
          Length = 572

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKQSTSSSQQI 448


>gi|314933668|ref|ZP_07841033.1| sensor protein SrrB [Staphylococcus caprae C87]
 gi|313653818|gb|EFS17575.1| sensor protein SrrB [Staphylococcus caprae C87]
          Length = 588

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +G +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLGVVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    + +++ +     +++A +  + +             D
Sbjct: 413 VNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + VT      +   + I D G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTQPGDTIAVTAS-KDEQYNILYISDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   + K  +QG GLGL I + I+  HGGQ  ++S+L +G   I  LP  +    
Sbjct: 532 YKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLPQPKNNEA 587


>gi|294665141|ref|ZP_06730443.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605102|gb|EFF48451.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 767

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 145/317 (45%), Gaps = 23/317 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             +     L  Q +    +    L+ +    +           +   ++ + Q      +
Sbjct: 334 GIWSASQTLRFQVLPPWWLSSWGLSLLALLTVCVIAAAILLYRRRLRRLNAWQ------L 387

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A  +          + AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 388 AMHKQ---------EVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 434

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE
Sbjct: 435 EQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQE 494

Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           + +    +I      +   D   +RQ++LNLL+NA+KFT   G V + +      +G   
Sbjct: 495 RGLRFSLEIGLLGDITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 553

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GGQ  + S+L
Sbjct: 554 EVADTGPGINVEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRL 613

Query: 463 REGVEVIAILPNTRVLN 479
             G   +  LP   V +
Sbjct: 614 GAGTRFVVELPLRWVAS 630


>gi|229194198|ref|ZP_04321054.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
 gi|228589289|gb|EEK47252.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
          Length = 484

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34]
 gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34]
          Length = 576

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            +KRAE+   +   FLA ++HELRTPLN +LG +E+++   +        ++ +  ++ S
Sbjct: 203 AKKRAEDSEQSTRDFLAMINHELRTPLNGLLGSAELLQDTPLDN----DQQKLLTTLNHS 258

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L  +IN++LD S+I AG  EL E       +  +   +   R+ EK ++        
Sbjct: 259 GELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSHD 318

Query: 358 LSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           L  V   DE  ++Q+ +NL+SNA+KFT   G VH  + W + + Q  ++KD+G GI   +
Sbjct: 319 LPKVFIGDEDRIKQIFVNLISNAIKFTPA-GFVHAKLWWHNKQLQ-FTVKDSGCGIDHSD 376

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +   F Q  I  K + +G GLGL I + +    GG   + S L  G      LP 
Sbjct: 377 QHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLPL 434


>gi|330684530|gb|EGG96241.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus epidermidis VCU121]
          Length = 506

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 277 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEDSLNMFLNIILKESNRI 334

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE    E++ S ++L ++    I  LQ +AQ KNI I   I+  +   
Sbjct: 335 ESLVMDLLDLSHIEQQN-EITTSYMNLSELAYTTIDNLQNQAQNKNITIESNIEQDVI-F 392

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A+E  + QVI NLLSNA+ ++    +V V+V    G+   + I+D G GI+  E   + 
Sbjct: 393 KANENKIAQVITNLLSNAINYSTNDNKVIVSVYR-EGKKVNLEIQDFGIGISAEEQKHIF 451

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  + S+L EG       
Sbjct: 452 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRISVVSRLNEGSTFKVTF 502


>gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1414

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            S FLA+MSHELRTP++ + G  E++ +  +    N+  +  + ++  S  HLL L+N+IL
Sbjct: 822  SLFLATMSHELRTPISGMHGMLELLRMSEL----NDDQRYLLRNVESSANHLLYLVNDIL 877

Query: 310  DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
            D S+IEAG+  L+  +  L  +V + I      A  K +++  + +  L  +   D   +
Sbjct: 878  DFSKIEAGQLHLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLPDLADIDPVRV 937

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
             QV+ NLL+NAVKFT   G + + V     +   I++ D G GIAE +   + T F Q  
Sbjct: 938  GQVVSNLLNNAVKFTEQ-GAISIQVSC-HDQQLVIAVTDTGIGIAEEKQAKLFTPFEQVE 995

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
              I     G GLGL I   ++   GG   ++S+L EG      +P   VL   P
Sbjct: 996  SDINRRFGGTGLGLAICDQLVKKMGGTLTVKSQLGEGACFRFSIPLLNVLWEPP 1049


>gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 948

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 622

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 372 MIDDQERLEFEEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 427

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 428 EDSELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQL 487

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRG 400
           R + + +E+     P +     D   + Q+ +NLL+NAVK T   GR+          + 
Sbjct: 488 R-RPEGVEMTLDACPDII-FNIDRNRLWQICMNLLTNAVKHTKK-GRIWFGYTLEAEEKM 544

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGLGL I + ++   GG   + S
Sbjct: 545 IKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLGLAICKGLVLKMGGNISVIS 600

Query: 461 KLREGVEVIAILPNTR 476
           +   G   I  LP  R
Sbjct: 601 EEGFGSTFIFTLPMKR 616


>gi|296157808|ref|ZP_06840642.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295892054|gb|EFG71838.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 656

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + + I E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+E   M 
Sbjct: 263 QREAIEERERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MI 319

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + D++   + + +
Sbjct: 320 PHLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFR 379

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              Q K  ++    +     V AD   ++Q++ NL+ NA KFT  GG ++V         
Sbjct: 380 SEIQVKQQDVHVHKNARHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-RDERMQ 438

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I+++D G GI   +I  +  +F QG+  +     G+GLGL I +++   HGG    +S
Sbjct: 439 VQIAVEDTGIGIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498

Query: 461 KLRE--GVEVIAILPNTRVLNF-----IPEDNHES 488
                 G      LP            +P++ H +
Sbjct: 499 -PGAHCGATFTITLPTAMPPEATSPVVVPDEVHPA 532


>gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
 gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
          Length = 1129

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 335 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 394

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 395 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 451

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 452 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 510

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 511 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 570

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 571 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 628

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 629 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 683


>gi|206969170|ref|ZP_03230125.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206736211|gb|EDZ53369.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 458

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAI-MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I +   +  +  AG +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIVIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 538

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 20/332 (6%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           ++   L   +     P    +             +L       L+        L +    
Sbjct: 72  MTGVELLGELLEGDIPRFPVIVLTGSSGTTQASQALQAGAQDYLTKDAIYPVVLSRLVDN 131

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +        L               + A+  N AKS  + ++SHE+RTP+ A+LG  +V
Sbjct: 132 AIERHVLMKRLKNSE-----------RAADSANRAKSALIGNISHEIRTPMTAVLGLCDV 180

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +   ++    N+  +  +  I  +G +L+ ++N++LD+S++EA   E+   AI+L D + 
Sbjct: 181 LLQSSL----NDDQRNLLSMIRDNGSYLVEIVNDLLDISKMEADMLEIKPLAINLRDFLD 236

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + I ++ +RA E +  +       +   ++AD   +RQ++LNLLSNA+KFT   G+V + 
Sbjct: 237 DLISIMGVRANENSTTLDVGFADDVPEWIFADPIRLRQILLNLLSNAIKFTP-NGKVRLE 295

Query: 393 V---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
               G  S       ++DNG GI + ++  +   F Q    + +  +G GLGL I + ++
Sbjct: 296 AQNAGNDSQNLIRFVVEDNGCGIPQEDLENIFLPFMQSGTDLANRSRGTGLGLSICRRLI 355

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              GG+  + S + EG      LP       +
Sbjct: 356 VAMGGRIDVESVIDEGSSFTITLPLVEAHESM 387


>gi|307154390|ref|YP_003889774.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306984618|gb|ADN16499.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 561

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 7/306 (2%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             V V +  +      ++  S+   L+        ++    ++ + I   Q +   L  +
Sbjct: 262 VLVSVPVHIREKFFGVLVLQSIQTTLSWTREELETLSDIAQQTALAIHHLQYQDQWLTQQ 321

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E      +  +++ E      S FL    HELR+PL  IL FS+++  +  G L N   
Sbjct: 322 IEK----LEAQKQQLEFAKKKTSEFLDHTIHELRSPLTGILSFSQILHEQIYGSL-NAKQ 376

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            +Y+  I  SGQ++L+L+N+ LDLS+I A R E+   A+++ D+    + M+++RA    
Sbjct: 377 SQYVDVIVSSGQYMLSLVNDFLDLSKISAQREEIVLEAMAVEDVCLAALAMVEVRAVASQ 436

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +   I P +    AD++ ++Q+++NLL+NA+KFT   G V + V          S+ D
Sbjct: 437 LTLKLDIAPDVDFCKADQRRIKQILVNLLTNAIKFTEK-GSVTLKVERKQD-YLDFSVID 494

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   +   F Q    +    +G GLGL +++ +   HGG   + S+  +G  
Sbjct: 495 TGIGIKTEDQNKLFQPFQQIKNHLSRKHKGTGLGLALSRQLAQLHGGDITLVSQEGQGSC 554

Query: 468 VIAILP 473
               LP
Sbjct: 555 FTLHLP 560


>gi|229081928|ref|ZP_04214420.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
 gi|228701516|gb|EEL54010.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
          Length = 484

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVRLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKI 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 683

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 137/251 (54%), Gaps = 10/251 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  I  I +
Sbjct: 294 EAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQIDVISQ 349

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++      
Sbjct: 350 AGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDYPE 409

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
           ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++KD G G
Sbjct: 410 NIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTVKDTGIG 468

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           + + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G E   I
Sbjct: 469 MEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFTCI 528

Query: 472 LPNTRVLNFIP 482
           +P     +  P
Sbjct: 529 IPFRLQADSNP 539


>gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 577

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA +SHELRTPLN I+G+++++     G L  E   + +  I R+G+    LI ++
Sbjct: 350 KDEFLAMLSHELRTPLNPIIGWTQMLRR---GNLTPEMQAKALETIERNGKLQNQLIEDL 406

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEK 366
           LD+SRI  G++ ++   I L  ++   I  ++  A++K + +  + +PS     V AD  
Sbjct: 407 LDISRIIRGKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADPT 466

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++QVI NLL+NA+KFT  GGRV V +   S    Y++++DNG GIA   +P +   F Q
Sbjct: 467 RLQQVIWNLLTNAIKFTPKGGRVEVDLAGDSAN-LYVAVRDNGMGIAPEFLPYMFERFRQ 525

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
                   E G+GLGL I + I+  HGG     S+   +G      LP 
Sbjct: 526 ADSRSTRKEGGLGLGLFIVRHIVELHGGMVQAESEGEGKGAVFTVELPA 574


>gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1323

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 229 EVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E      +  R  AE    N AKS+FLA+MSHE+RTP+N ++G + ++      P  N  
Sbjct: 664 EAVVQREELARLAAEADDANRAKSQFLANMSHEIRTPINGVIGMTSLLLD---SPGLNSE 720

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +    I  SG+ LL LIN+ILD S++EAG+ +L      L D + +  ++L  RA EK
Sbjct: 721 QSKQARVIQSSGEALLALINDILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAGEK 780

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--Y 402
            +E   K D  +   +  D   +RQ+++NL  NA+KFTA G  +V V++     +     
Sbjct: 781 QLEFICKADNQVPDRLRGDPGRLRQILINLAGNAIKFTANGSVKVLVSLADRDEKTALLR 840

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI+E +   + + F Q   +      G GLGL I++ ++    G+  + S+ 
Sbjct: 841 FSVIDTGIGISEEKKRLLFSEFTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGVTSEK 900

Query: 463 REGVEVIAI--LP 473
             G E      LP
Sbjct: 901 GSGSEFWFTARLP 913


>gi|157273376|gb|ABV27275.1| alkaline phosphatase synthesis sensor protein PhoR [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F A++SHELRTPL +IL + E +    +   +NE   +++  I++    + N
Sbjct: 123 RLERVRREFFANLSHELRTPLTSILAYVETLLNGAI--YDNENNIQFLQIINKHATRMQN 180

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ +I DLS IEAG ++L    I L   V    +++   A  + +    ++   +  V+A
Sbjct: 181 LVRDIADLSAIEAGEFKLEPVTIELKAFVDNLAVLVLPEATTRQVTFRNEVPAGV-QVYA 239

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + Q+++NL+ NAVKF   GG V VT  + S     I+++D G GI    +  +   
Sbjct: 240 DPQALEQILMNLIINAVKFNRPGGEVVVTANFESDVRTVIAVRDTGIGIEAKHLGRIFER 299

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             +   +      G GLGL I + ++ NHGG   + S    G E    LP  R +  +P 
Sbjct: 300 LYRVDKSRSQEVGGTGLGLAIVKHLVLNHGGDISVDSTPGVGSEFRVRLP--RPVTALPS 357

Query: 484 DNHEST 489
            +  +T
Sbjct: 358 MSSTTT 363


>gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1347

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 775  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 834

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 835  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 890

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 891  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 950

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 951  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1010

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1011 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1069

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1070 EEIIGTETPDIK 1081


>gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1358

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 786  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 845

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 846  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 901

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 902  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 961

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 962  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1021

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1022 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1080

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1081 EEIIGTETPDIK 1092


>gi|262407431|ref|ZP_06083979.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262354239|gb|EEZ03331.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1358

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 786  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 845

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 846  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 901

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 902  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 961

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 962  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1021

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1022 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1080

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1081 EEIIGTETPDIK 1092


>gi|302418052|ref|XP_003006857.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
 gi|261354459|gb|EEY16887.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
          Length = 1773

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 19/261 (7%)

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              E + +  E   +KSRFL++MSHE+RTPL  I G    ++   +    NE  ++Y   I
Sbjct: 1104 LLEAKLK--EAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDSVL----NEEQRDYTNTI 1157

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              S   LL +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   +
Sbjct: 1158 QTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRALIEDVNELVSTMAIAKRLELNYVV 1217

Query: 355  DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTS-----GRGQYISI 405
            + ++   +  D+  +RQV+LN++ NA+KFT+ G    R  V    T+           +I
Sbjct: 1218 EQNVPTWIKGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCRVYTSETAMLTPNEIMLEFAI 1277

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G G  E E   +   F Q   +      G GLGL I++ ++  HGG     +   +G
Sbjct: 1278 IDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGVMEGTAVPGKG 1337

Query: 466  VEVI----AILPNTRVLNFIP 482
                      LP        P
Sbjct: 1338 STFTFTARFTLPTENDHPDGP 1358


>gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 788  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 847

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 848  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 903

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 904  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 963

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 964  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1023

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1024 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1082

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1083 EEIIGTETPDIK 1094


>gi|237715817|ref|ZP_04546298.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229443464|gb|EEO49255.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1360

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 788  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 847

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 848  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 903

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 904  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 963

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 964  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1023

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1024 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1082

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1083 EEIIGTETPDIK 1094


>gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
 gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
          Length = 1360

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 788  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 847

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 848  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 903

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 904  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 963

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E ++P +   F
Sbjct: 964  VHKIMNNLLSNAFKYTPQGGTVNLQLATEEIEERNYVRISVSDTGIGISESDLPYIFDRF 1023

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1024 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQIDRGSVFTVWLPMDLKPEPNELP 1082

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1083 EEIIGTETPDIK 1094


>gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                + AEE N  K+ F+A+M+HE+RTPLNAI+GF+ ++    M  L+ ET   ++ +I
Sbjct: 52  LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDDLDRETRMAFLKEI 109

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + +   LL L+N++LD S+IEA   E ++  + +  ++ E      +R+    I++    
Sbjct: 110 NDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVE 169

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 +  D     QVI NL+ NA+KFT   G V +     S    Y  + D G GI E
Sbjct: 170 RLPQCRLVVDRVRFAQVIGNLVRNALKFT-EMGSVKIGCRRLSNHNFYFYVADTGCGIDE 228

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG      LP 
Sbjct: 229 VGRHAIFERFVK----MNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|237653315|ref|YP_002889629.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
 gi|237624562|gb|ACR01252.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
          Length = 913

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 5/305 (1%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A +  A          +   +  A          +     ++ +   + ++    LE A
Sbjct: 607 FAETLLAGAIGSASARVMVSTVVQAEPLGLGEVMDILDEASQVRAYSHKLEEKSRALEAA 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +      +R +E +  K  F++S++HELRTPL +I   SE++  +    ++ E  + ++
Sbjct: 667 TAELRAANERLKELDRLKDDFMSSVTHELRTPLTSIRALSEMMLDDP--DIDVEDRQRFL 724

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I      L  L+N++LD+++IE+G  E   + I L ++VR          +++  E+ 
Sbjct: 725 GIIVSEAVRLSRLVNQVLDMAKIESGHAEWHNTDIDLCELVRHSGDATLQLFRDRGAELH 784

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGP 410
             +  S+ ++ AD   + QV+LNLLSNA KF   G GRV VT+    G    +++KDNGP
Sbjct: 785 LHLPESVPTLRADHDRLLQVMLNLLSNAAKFVPTGSGRVDVTLSC-DGERLRVAVKDNGP 843

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   + P V   F QG        QG GLGLPI++ I+ + GG+  + S   EG     
Sbjct: 844 GIEPAQQPVVFEKFRQGGDERSRP-QGTGLGLPISRQIVEHFGGRLWLESVPGEGATFSF 902

Query: 471 ILPNT 475
            LP  
Sbjct: 903 ELPLK 907


>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 733

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 8/242 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E ++ AEE    K+ FLASMSH++RTP+N ++G   ++    +    ++T K    
Sbjct: 214 RELVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKL----DDTQKHQAS 269

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + LL+LIN+ILD S++EAG+ +L     ++ D + +    +  RAQEK +E+  
Sbjct: 270 LAKSSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELIL 329

Query: 353 K-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDN 408
           +  D   + + AD   +RQ++ N++ N++KFT+ G    +  + V   +     I + D+
Sbjct: 330 EVTDIEQNMIKADPGRIRQILSNIVGNSIKFTSEGFIAIKAILDVTEPTDARLIIEMSDS 389

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E +I T+  SF Q   +      G GLGL I + +     G+  ++S   +G   
Sbjct: 390 GIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFGKGSIF 449

Query: 469 IA 470
             
Sbjct: 450 TI 451


>gi|304311042|ref|YP_003810640.1| histidine kinase [gamma proteobacterium HdN1]
 gi|301796775|emb|CBL44987.1| histidine kinase [gamma proteobacterium HdN1]
          Length = 542

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 13/354 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
             L  S L++             ++  L         +       +    L+        
Sbjct: 71  FILLESGLTHSSASNFAVSGLTGIMHYLDAVENYMGALYRERAEQVFEELLTRSGTQAPQ 130

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                 ++    A+K  L  ++          R+ AE  + AK+ FL++MSHE+RTP+N 
Sbjct: 131 QSDIMHRLELELADKMQLAHDVRRLNKDLLRARESAEVASRAKASFLSNMSHEIRTPMNG 190

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++  ++++    +    +   K+ +G I+RS   LL ++N++LDLS+IE G   L + + 
Sbjct: 191 VIASAQLLADTPL----DAEQKDLVGLINRSANTLLAVLNDLLDLSKIETGTMTLEKRSF 246

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L +I++E   +   +A+E+ + +   I+     S++AD   +RQV++NL++NAVKFT  
Sbjct: 247 DLNEILQEACDLCIPQAEERGVNVCLTIEEGTPLSMFADPVRIRQVVMNLVANAVKFTPE 306

Query: 386 GGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G V V VG      Q  ++     D G  I +  I  +       + +        GLG
Sbjct: 307 -GSVTVEVGHDQIDEQRFNVIVEINDTGIVIPKDRIDKLFDEGDVDAASSARHFGSTGLG 365

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQYKCY 494
           L I +S++    G   + S   +G   I  LP T   L   P +    +  +CY
Sbjct: 366 LTICKSLVDLMDGVIEVDSGAGKGASFIVTLPMTVAALQAAPVEPV--SPGRCY 417


>gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 835

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 9/265 (3%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +  +   +   K A+  + N  K  FLA +SHEL++PL A++G S +++ E +G L N  
Sbjct: 314 QQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGDL-NPR 372

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344
              Y   I+RSG+ L+ L+N++LDL+R+E G+ +LS S +++ +I       +  + +  
Sbjct: 373 QVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIQEICHRAYHSIAEKYKGK 432

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +K ++    I+  L  + ADE  + Q++++LL NA+KFT  GG+  + V          
Sbjct: 433 SDKPLDFSLDIEVGLHQLLADELRLHQMLVHLLDNAMKFTQTGGKFGLKVSRWED-WLAF 491

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI E     +   F Q    +    +G GLGL + Q +   HGG     SK  
Sbjct: 492 TVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAG 551

Query: 464 EGVEVIAILPNT--RVLNFIPEDNH 486
           +G +   +LP +  R    +P  + 
Sbjct: 552 QGSQFTLLLPPSPNREQRSLPLQSS 576


>gi|78188414|ref|YP_378752.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
 gi|78170613|gb|ABB27709.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
          Length = 595

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 168/457 (36%), Gaps = 38/457 (8%)

Query: 29  SKMDFDREIITLHVES---LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
           SK  +D      HV+    L  +   +    + + +                       A
Sbjct: 158 SKPLYDVGWYKEHVQGNVPLLFLGMFVMSLGVGMGSGFLLTRPLRQLAA---------VA 208

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
              L      +     +         +      +  +++T+     W     +  + A +
Sbjct: 209 RQRLQGDFSAALSIKPKHEFGE----LAHALNSMSDSVITMRRHEEWYLAVFSAIREAII 264

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT- 204
           +   +   +         F     +  +   + +    + ++         +     +  
Sbjct: 265 VTDAAGDIIFANPSAARTFRMGQTIFTSRPVKHLPDPTLQELFNRVHTTRVMVRKEEVAL 324

Query: 205 --------YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     +    +  +    E    +          ++ R+           F+AS+
Sbjct: 325 STARGERIMQINSMPLATMGKTYEGCVFVLNDITTVRNLEKIRR----------DFVASV 374

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPL  I G++E +    +   +      ++  I ++ Q L  L+N++LDLSRIE+
Sbjct: 375 SHELRTPLTVISGYTETLLEGAL--HDPAHAVPFLKTILQASQQLTALVNDVLDLSRIES 432

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G  +   +++ +  +VR+ +  L+   ++K I +  +I   L +++AD + +  VI NL+
Sbjct: 433 GAIDYQFTSVDIGGVVRKAVEFLKPSLEKKQIRLDVRITAGLPTIYADARYLDIVIRNLV 492

Query: 377 SNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            NA+       GR+ ++    +     + ++DNG GIA+ ++  +   F +         
Sbjct: 493 DNAINAVDERNGRIRISAFAMNKEVVRLEVEDNGVGIAKADLDRIFERFYRVDKGRSRQY 552

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I + I+  H G  ++ SKL  G     +L
Sbjct: 553 GGTGLGLSIVKHIVLAHQGDIVVNSKLNHGSVFSVLL 589


>gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1129

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 160/464 (34%), Gaps = 20/464 (4%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPM 74
               +    +  + +     +  +    +          V++ +       +       +
Sbjct: 301 RSMIERALHDARAPLGDHVAVRRVGARFVVYDRLPGTGLVMMTSFSWRSMVREMRVGLGI 360

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
                L       S         ++          +        L       +   +   
Sbjct: 361 TFGAALLGIVLLWSAIVLFDRRALRPA-HRRAIRLIESEAFNRTLARHAPAGLLLLSAAD 419

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
               ++  A                 +  +                   +  +     + 
Sbjct: 420 GETMVHNDAVRAYDGGAGGQRLGKRIWDAYRERAAAG---------DGRLDVMQHELAVE 470

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A     Y+   + ++    +         +   ++ +    E R  AE+ N AKS FLA
Sbjct: 471 QADHGKVYLALQVVRTMFHGVDVLLCTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLA 530

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTPLNAI+G  E++    +        +  +  +  S   LL+ IN++LDLS+ 
Sbjct: 531 TMSHEIRTPLNAIVGNLELMARAQLPLAE----RRRLQTVMSSSDALLHTINDVLDLSKA 586

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           E+ +  L      L  ++ E   + +  A  K++ +   I   L      D   +RQ++ 
Sbjct: 587 ESNQMALEAVPFDLRAVLHEVAAIFRALADAKHLRLECVIAAGLGDGYVGDPARVRQIVS 646

Query: 374 NLLSNAVKFTAIGGRVHVTV--GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           NL+SNA+KFT   GRV V        GRG  I ++D G GI    +PT+   + Q   +I
Sbjct: 647 NLVSNAIKFT-EHGRVTVEALPAAVPGRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASI 705

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                G GLGLP+ + +    GG   + S+   G    A LP  
Sbjct: 706 YRRFGGTGLGLPLCRRLARLMGGDVTVESRPGAGAVFTASLPLA 749


>gi|260223382|emb|CBA33893.1| hypothetical protein Csp_B21310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 769

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 20/337 (5%)

Query: 164 FLSFFPVVVALST-QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             +  P + AL+   ++M     +  LA  + +A++    ++  L    V        + 
Sbjct: 115 LQALAPAMNALTMRSSLMMSTQQEQVLARSVESAVAKLRLMSGLLVLLLVSAAVIGVRQG 174

Query: 223 DLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            +  E +  + + ++     ++A+  N  KS+FLA+MSHELRTPLN +LG   ++E   +
Sbjct: 175 RVERERQRLERMHEQMRVANEKADAANAGKSQFLANMSHELRTPLNGMLGMLSLLESTPV 234

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               N    +YI   +RS +HLL+L+N+ILD S +EAG+  L   ++ L  +V +   ++
Sbjct: 235 ----NAQQDDYIQTANRSAKHLLSLLNDILDASALEAGKMTLKPESVHLPSLVGDVQALM 290

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +  A EK + +  K D  L   V AD   ++Q++LNL+SNA+KF+   G V V V   +G
Sbjct: 291 RPVALEKRLVLSVKADKDLPRWVLADGTRVKQIMLNLVSNALKFS-EHGTVSVEVFSPAG 349

Query: 399 RG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                       I + D G G++   +  +   F QG+ +      G GLGL I++S+  
Sbjct: 350 EELKAGDDVALKIRVTDEGMGMSADVLAKLFQRFEQGNASSARRHGGTGLGLEISRSLAR 409

Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDN 485
             GG   + S   +G    A   LP +   N    D 
Sbjct: 410 RMGGDIEVSSVEGKGSVFTATLCLPLSSPPNEQTTDA 446


>gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 370

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 146/373 (39%), Gaps = 24/373 (6%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
                W+    + ++    CW+ + L                   L+  ++         
Sbjct: 16  ARHQRWQWREALDRLLWMSCWSFVLLSAS-----------YGVVRLMGRALGWRPVPYGQ 64

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             +      V++AL      ++                          ++ +++     +
Sbjct: 65  LMIIGGVGVVMLALVALLWNALGFDRDDRLFFRILDSLSEIGRGNFSARAMLEVRRGFPD 124

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                  +        E  +  E     +  F+A++SHE++TPL +ILGF + ++ + + 
Sbjct: 125 H-----PMNQLVLHVREMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGL- 178

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +    + Y+  I    + L  L + +L L+ +E+G + ++ +   L   +RE  I  +
Sbjct: 179 --SEGERRHYLDIIEAESERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACE 236

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               EK + +  +++P    +  DE  + QV +NLLSNA+KFT  GGR+ V +       
Sbjct: 237 PLWTEKGLFLDMQVEP--VELEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETG- 293

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +S+ D G GI   ++  V T F +        + G GLGL IA+ I+  H G   + S
Sbjct: 294 VCVSVADTGIGIRPEDVSRVFTRFFKAD--RSRGKPGNGLGLAIAKRIVEMHRGDISVES 351

Query: 461 KLREGVEVIAILP 473
           +   G      LP
Sbjct: 352 EPGRGSTFKVHLP 364


>gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 683

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 288 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 343

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++
Sbjct: 344 IDVISQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQL 403

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 404 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 462

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   + S+   G
Sbjct: 463 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVG 522

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 523 SEFTCIIPFRLQADSNP 539


>gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 974

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 124/255 (48%), Gaps = 19/255 (7%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL-------------NNETYKEY 290
           E    K+ FLA++SHELRTPL +ILGF+ VI+ +    +               E     
Sbjct: 721 EVERMKTDFLATVSHELRTPLTSILGFATVIQDKLNRVIIPELDLAQPHLGKATERVMRN 780

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I    Q L  LIN++LD++++EAG+    E   ++  I+   I  +  +AQ+KNI +
Sbjct: 781 LAIIESEAQRLTVLINDVLDIAKMEAGQESWQEQPCAIGPIIERAIATITPQAQKKNISL 840

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNG 409
              ++P L     DE  + QV+LNLLSNAVKFT  G    +T          ++ I D+G
Sbjct: 841 QGDLEPGLPDFIGDENRILQVVLNLLSNAVKFTPKG---LITARSHFHQNYLWVEIIDHG 897

Query: 410 PGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           PGI   +   +   F QG    +    QG GLGLPI + I+ +HGG   + S L  G   
Sbjct: 898 PGIHPADQEKIFEPFQQGGGDVLTDKPQGTGLGLPICKKIVEHHGGTIGVNSSLGRGSTF 957

Query: 469 IAILPNT-RVLNFIP 482
              LP     +   P
Sbjct: 958 YFSLPVPVPAVETSP 972


>gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 867

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 163/368 (44%), Gaps = 9/368 (2%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
           I        + L+    ++ +  ++ +   + + +   + +            FP+ + +
Sbjct: 66  IMTTFALGSVALLAHLLYSKQVSSLRRVLAIFLDVGAVS-AGLYAGGEYLSILFPIYLWV 124

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                    +  ++LA + + +       T +     +  L        +          
Sbjct: 125 IFGNGFRFGLDYLALATIASVSGFAVVLTTPYWQGEFILGLGLLGCLVVVPLYASKLIRS 184

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
               ++ AE  N AK++FL ++SHELRTPLNAI+G  ++I+   +    +   ++    I
Sbjct: 185 MTAAQQAAEAANKAKTQFLTAVSHELRTPLNAIIGMGDLIQDTKL----DPEQRDMAKTI 240

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG  LL++IN ILD SRIE+GR  ++ +   +  I+RE   ++Q +A+ K + I + +
Sbjct: 241 QYSGSSLLSMINGILDFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRYV 300

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410
           D  L   +  D + +R+V+LN+  NAVKFT  G   +  T    +G      + +KD G 
Sbjct: 301 DSKLPPFLVGDARHIREVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTGI 360

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+E     +   F Q   +I     G GLGL I + ++   GG+  + S+  +G     
Sbjct: 361 GISEDAQGRIFERFTQADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSSQPGQGSMFTI 420

Query: 471 ILPNTRVL 478
            L   R +
Sbjct: 421 ELEVGRAV 428


>gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1]
 gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1]
          Length = 935

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  ++  ++ R+ A+  N AK++FLA+MSHE+RTPL  +LG  E++    +    +
Sbjct: 435 ISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL----D 490

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  I  S   LL LI ++LD+S+IEAG+  L  S  S  D+VRE +      A+
Sbjct: 491 AQQRDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAAR 550

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            K ++++  +DP L   +  D   +RQ++ NLLSNAVKFT   GRV +     +  G+  
Sbjct: 551 SKGLQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFT-DCGRVVLRARLLNRDGERS 609

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIAE + P +   F Q          G GLGLPI Q +     GQ  + 
Sbjct: 610 CLLWQVSDTGKGIAEQDQPFIFEPFYQTEG-HSQVIPGTGLGLPICQRLTQLMNGQLRLV 668

Query: 460 SKLREGVEVIAILPNT 475
           S+L  G      LP  
Sbjct: 669 SELGLGSSFSLTLPLE 684


>gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1095

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  KS F+A++SH+LR+PL  + G++ +++   M    NE  K Y+  I    +++  
Sbjct: 859  ELDQIKSDFVATVSHDLRSPLTLMKGYTTMLQ---MVGELNEQQKAYVQKIISGVENMSR 915

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
            L+N +LDL RIEAG   L    + +  +V E +  LQL+A +K IE+ ++   +    V 
Sbjct: 916  LVNNLLDLGRIEAG-IGLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEWQSTAPVIVE 974

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             D   ++Q + NL+ NA+K+T  GG+V + +   S     + + D G GIA  ++P +  
Sbjct: 975  GDRALLQQALYNLVENAIKYTPSGGKVSIRLEERSE-SLVLKVVDTGIGIAPLDLPRLFE 1033

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             F +        ++G GLGL I +SI+  H G+  + S+L +G      LP  + +
Sbjct: 1034 KFYRSGRRESYQQRGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELPLRQPI 1089


>gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1522

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 147/376 (39%), Gaps = 10/376 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           + L          P        A  +  L+       ++  A   +     +        
Sbjct: 332 FALAAATGIAPGHPAAPDTLTVAAPVWPLADQ--LTGVVHIADLRAMVADSLPAGVWNRQ 389

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-R 239
           S   + + L     T  S    +  + ++                    +A + S E  R
Sbjct: 390 STQAVALPLPPSGETGRSGMLIVGLNPYRLFDDGYRRFLGLVAGQVAAAIANAESYEAER 449

Query: 240 KRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELE--TMGPLNNETYKEYIGDI 294
           +RAE     + AK+ F ++ SHE RTPL  +LG  E +      +   +    +  +  +
Sbjct: 450 RRAEALAEIDRAKTAFFSNASHEFRTPLTLMLGPLEEMLHGSAALAGSSVSVSRNELEMV 509

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           HR+GQ LL L+N +LD SRIEAGR   S + + L     +     +   ++  +      
Sbjct: 510 HRNGQRLLRLVNALLDFSRIEAGRMRASFAPVDLAAYTADLASGFRSAMEKAGLAYRIDC 569

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 VW D     +++LNL+SNA K+T   G V VT+         + ++D G GI E
Sbjct: 570 PTLPEPVWIDRDLWEKIVLNLISNAFKYTLR-GEVAVTLEAVR-GAAVLKVRDTGIGIPE 627

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            E+  V   F +    +    +G G+GL + + + A HGG   + S++ EG      LP 
Sbjct: 628 AELTRVFDRFHRIEGQVGRTHEGTGIGLALVKDLTALHGGTVGVESRIGEGAVFTVSLPF 687

Query: 475 TRVLNFIPEDNHESTQ 490
            R    + +   E+ Q
Sbjct: 688 GRSHIPLADVGGETAQ 703



 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 222  DDLIAELEV--AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              + AE E   A   ++E  +RA++   A  +    ++H+    L  I G  +++  +  
Sbjct: 989  RHITAEKEQGQALRQAEEQLRRAQKM-EAVGQLTGGVAHDFNNLLQVIGGNLQLLLNDVG 1047

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +N    + + +          L + +L  +R    R  L    ++   ++R    ML
Sbjct: 1048 ---DNARAADRVRNALSGVSRGAKLASSLLAFAR----RQPLEPRVVNPGRLIRGLDDML 1100

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----- 394
            + R   + I I       L +   D   +   +LNL  NA       G + +  G     
Sbjct: 1101 R-RVLGEEIRIEVIGGGGLWNTVVDPTQVENALLNLAINARDAMKGRGVLTIEAGNAELD 1159

Query: 395  ---------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
                        G+   +++ D G G++          F       K    G GLGL + 
Sbjct: 1160 DVYAARHGDVRPGQYVMLAVTDTGSGMSPEVRERAFDPFF----TTKPEGHGTGLGLSMV 1215

Query: 446  QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
               +   GG   I S++  G  +   LP T+ +   P
Sbjct: 1216 YGFVKQSGGHVKIYSEMGHGTTIRLYLPRTQEVEDPP 1252


>gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 554

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           + ++    A   N AKS+FLA+MSH++RTP+NAI+G +++          +E     +  
Sbjct: 162 MLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKIARESG---EASEKIAGCLDA 218

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S +HLL LIN++LD+SRIE+G+ EL E    + D+V     +++ +AQ K+ E+   
Sbjct: 219 ITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRID 278

Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKD 407
                  +   DE  + Q++LNL SNAVK+T  GG + + V   +           +I D
Sbjct: 279 RSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGSIALVVQELAKTRPSYASVAFTITD 338

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG G++   +  +   F +      +  QG GLG+ I ++++   GG   + S+   G  
Sbjct: 339 NGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDSEKGRGSS 398

Query: 468 VIAILPNTRV--LNFIP--EDNHESTQYK 492
               L    V   +  P  E   EST Y+
Sbjct: 399 FRVTLELRVVSSADACPPLEVVPESTSYR 427


>gi|42521079|ref|NP_966994.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410820|gb|AAS14928.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 475

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 146/257 (56%), Gaps = 3/257 (1%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                  ++A+         + ++  E+EN  K +F AS++HELRTPLNAI+GF+E+I+ 
Sbjct: 208 LHFSNTQMLAKQHKTNIELQQIKETLEQENANKLKFFASVTHELRTPLNAIIGFAELIKN 267

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           ET+G ++N  YKEY  DI+ +G HLL LIN++LD S+ E+    + +   +L  I+  C+
Sbjct: 268 ETLGSMDNSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCV 327

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            ML  + +E  I + +++      V AD K M+QVI+NLLSN++KFT   G + + +   
Sbjct: 328 NMLLPKLKEAGINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKEN 387

Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I   DNG GI + +I  V++ FGQ     ++  +G G+GLP+++ ++    G 
Sbjct: 388 IEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMDGT 445

Query: 456 FLIRSKLREGVEVIAIL 472
           F I+S+ + G  +    
Sbjct: 446 FDIKSEAKLGTTITLNF 462


>gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1296

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I + +  +      +  AE  N  K+ FLA +SHE+RTPLNAI+GFS+++  E  GP+
Sbjct: 1038 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1097

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +  Y EY  DI RSG+H+L+++N++LD+S+IEAG  +L  +A+ L + V E + ++Q +
Sbjct: 1098 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1157

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A  + + I   +  ++  V AD + ++Q+ LN+LSNA++FT  GG++ V+  + +     
Sbjct: 1158 ANGQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1217

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461
            + ++D G G+   E+   +  F Q S         G GLGLP+ ++++  +   F I S 
Sbjct: 1218 LRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVFSINSA 1277

Query: 462  LREGVEVIAILPNTRVL 478
              EG  V    P+ RVL
Sbjct: 1278 PNEGTLVEITFPSQRVL 1294


>gi|167567131|ref|ZP_02360047.1| probable two-component sensor/regulator [Burkholderia oklahomensis
           EO147]
          Length = 923

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 158/383 (41%), Gaps = 20/383 (5%)

Query: 97  DIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
                +   W       ++     G  W +  +      T + +++    T    +    
Sbjct: 252 LPPKCDRTHWIRRGDYYVICTPLSGPNWQVAAIYPVSAVTDKAMSLLPLTTRWTFVVQLL 311

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L  F+          P+   +          L   L       L         L  +   
Sbjct: 312 LIAFVYVTLQRQLGRPLQHFVDIIDAQREGDLGRRLPTGRRDELGRIASAYNSLLSTVNA 371

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                     L +++        E ++ AE  +  KS  +AS+SHELRTPLN I+G   +
Sbjct: 372 YYKT------LESKVRERTRELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALAL 425

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +        ++ +    +S  +LL ++N +LD SRIEAG+ EL+     L+ ++ 
Sbjct: 426 LNRSAL----QAEQRDLVRVAQQSSSYLLGIVNNVLDFSRIEAGQLELASEETDLLALLD 481

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + ++ + +RAQEK++ +   +   +   VW D   +RQ+++NLL NAVKFT   G +H+T
Sbjct: 482 QAMLTIHIRAQEKSLNLRTFVAADVPRRVWLDGLRVRQILINLLGNAVKFT-EHGHIHLT 540

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V   +    ++ ++D G GI +     +   F Q          G GLGLPIA  +    
Sbjct: 541 VERRADMLAFV-VEDTGKGIPDDYQLDIFKPFVQVRAHDS----GNGLGLPIASRLANLM 595

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G+ L+ S+L +G     +LP  
Sbjct: 596 NGEILLDSRLGKGTRFTVLLPLQ 618


>gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
          Length = 880

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++   +    +     
Sbjct: 382 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLPSGID----S 437

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   +        +K + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLVVKKRLT 497

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+  +   +  D   ++QVI NLL+NA+KFT   G + +    T         +D 
Sbjct: 498 LYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHT-GCIILHAYVTQ-GYLAFRTRDT 555

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 556 GVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEPGMGSQF 615

Query: 469 IAILP 473
           I  +P
Sbjct: 616 IVRIP 620


>gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
 gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
          Length = 454

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 11/250 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     E++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDD---GALSEPVAPEFVKVSLTETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+     L     +    +   +      + + + K  EI +    +   V 
Sbjct: 263 TDLLSLSRIDNNTSHLDVELTNFTAFITYILNRFDKIKNQDETKKYEIIRDYSITPIWVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   M QVI N+++NA+K++  GG + V+V  T  +   +SI D G GI + ++P +  
Sbjct: 323 IDTDKMTQVIDNIMNNAIKYSPDGGTITVSVRTTDVQ-LILSISDEGLGIPKQDLPKIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----NTRVL 478
            F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP      RV 
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLPYDNDAVRVD 441

Query: 479 NFIPEDNHES 488
           ++  E+N ES
Sbjct: 442 DWENEENVES 451


>gi|307592105|ref|YP_003899696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985750|gb|ADN17630.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 816

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 226 AELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
                A    D     ++A++ N  K  FLA +SHELR PLNA+LG+S+++         
Sbjct: 414 ELARRAAIALDNAYLYQQAQQANQIKDEFLAIVSHELRNPLNAMLGWSQLLHKREF---E 470

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +    + I  I R+      LI ++LD+SRI   R  +S   + LI ++   I  L+   
Sbjct: 471 DTMVNQAITIIERNALLQKKLIEDLLDISRIIQNRLHISREPVYLIPLIDTVIDTLRPNI 530

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + K IEI   +D S   V+ D   + Q++ NLLSNA+KFT+ GG+++V +    G    I
Sbjct: 531 KAKAIEISSNLDTSTKPVFGDAYRLEQIVGNLLSNAIKFTSTGGKINVQLSQ-EGSLAKI 589

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462
           ++ D G GI+   +P +   F Q   +   ++ G+GLGL I + ++  HGG     S  +
Sbjct: 590 TVADTGQGISPEFLPFIFERFRQADPSKTRSQSGLGLGLAIVRHLVELHGGSVYAASPGV 649

Query: 463 REGVEVIAILP 473
            +G   I  LP
Sbjct: 650 GKGATFIVQLP 660


>gi|291522805|emb|CBK81098.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 734

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 141/320 (44%), Gaps = 14/320 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            ++     +    +   A++    + + + K   +       + +  A LE       E 
Sbjct: 288 FLTTLPNVLYALVVYIMAVAVVDMLLWRIDKIYQQ--KEAMAQREYTAALEEKNKQLQEA 345

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             +A + N AKS FL+ MSH++RTPLN I+G   +++++     + E  KE    +  S 
Sbjct: 346 VVQARKANAAKSNFLSRMSHDMRTPLNGIVG---LLKIDEDHFEDQELVKENHKKMQISA 402

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS- 357
            HLL+LIN++L +S+IE G   L+   I L  +  E + +++ +A E  I    + + S 
Sbjct: 403 DHLLSLINDVLQMSKIEDGTVSLTHECIDLNKLFEEIVTIIRGKALEAGISWESEKEKSA 462

Query: 358 --LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411
                V+     +RQ+ LN+  N +K+   GG+V   V              +I D G G
Sbjct: 463 VSYPYVYGSPLHLRQIFLNIYGNCIKYNRPGGKVSTRVETLEEHDGICTYRWTISDTGVG 522

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++   +  +   F Q     +S   G+GLG+ I + ++   GG   I S+  +G   +  
Sbjct: 523 MSREFLEHIYEPFVQEKNDARSVYHGIGLGMSIVKELIDQMGGSISIESEPGKGSTFMVA 582

Query: 472 LPNTRVLNFI--PEDNHEST 489
           +P          P++N   T
Sbjct: 583 IPFEIAPAPTQHPDENTGKT 602


>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
 gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
          Length = 1139

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 154/361 (42%), Gaps = 8/361 (2%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              L W L+  +           + K     +  +I  +       + F++   + +  +
Sbjct: 340 LQNLNWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITLPLLKLTWA 399

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSL 234
            + + +  +    +       +         + +S  + +   +++  +L   +++ +  
Sbjct: 400 AERVSAGDLDQPIIHTQRRDEIGRLAVSFERMQRSIREKIQLIKSQNIELEDNIQLIRKQ 459

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           +DE     +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   ++  +  I
Sbjct: 460 NDE----LQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPIS-AAHRYQLDII 514

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SGQ L NL++++LD  ++  G  ++   A++L +  R  + +      +K + I  +I
Sbjct: 515 ISSGQRLANLVDDLLDYHKMRYGHLDIETQAVNLSNATRMVLELSHHLLGKKTLRIINQI 574

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 V AD + + QV+ NL+ NA+K+T+  G++ ++      +   I + D G GI  
Sbjct: 575 ADQPLWVSADAQRLEQVLYNLIGNAIKYTSE-GKIVISATPMEHQ-VRIQVVDTGQGIPA 632

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP 
Sbjct: 633 EQLEHIFEPLIQAGYDSSRYRQGAGLGLTISRQLIELMQGSLYVSSQPMVGTTFSFTLPL 692

Query: 475 T 475
            
Sbjct: 693 A 693


>gi|189466377|ref|ZP_03015162.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
 gi|189434641|gb|EDV03626.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
          Length = 1352

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 20/298 (6%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
                          L   L  A   + ++     +  +  LS   EKD            
Sbjct: 755  IVIHYPWYRSFWAYLVYFLIVAGIIYVFLRVRNARKALA-LSLAKEKD------------ 801

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                ++R EE N  K RF  ++SHE RTPL  I+G  E++       L+   Y+  +  I
Sbjct: 802  ---EKERIEEVNKMKLRFFTNISHEFRTPLTLIVGQIEMLLQSEKLSLSV--YRR-LHSI 855

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            H++  +L  LI E+LD  + E G  +L    + ++  + +        A+++NI    + 
Sbjct: 856  HKNAMNLRFLITELLDFRKQEQGFMKLKVECVDIVPFLEDVYRSFWELARKRNIVYTFEH 915

Query: 355  DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                  VW D   M++ + NLLSNA K+T+ G  V V+V     +   I++ D G GI +
Sbjct: 916  PNEKMEVWFDPVQMQKAVFNLLSNAFKYTSDGKSVKVSV-RKQQQIMEITVSDTGCGIPQ 974

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +   F QG+   +    G G+GL + + I+  H G   + S L EG      L
Sbjct: 975  DDLSRIFERFYQGNEKQQRGIAGSGIGLALTKGIIEAHRGDIAVESVLEEGSSFKIQL 1032


>gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 630

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 5/263 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 221 TEQREIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 280

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                N      +  I  S +    LI+++LDLS +  G+ +L   ++ L + VRE +  
Sbjct: 281 EEGHPNYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGA 337

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ K+  +   + P+   V  D   ++QV  NLLSNA+KFT   GR+ VTV     
Sbjct: 338 QEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEH-DD 396

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S++D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 397 GHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGA 456

Query: 459 RS-KLREGVEVIAILPNTRVLNF 480
            S    +G      LP  +    
Sbjct: 457 TSGGRGKGATFTVRLPEHQPDQA 479


>gi|332293070|ref|YP_004431679.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
 gi|332171156|gb|AEE20411.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
          Length = 1216

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            +  I + ++        +++AEE +  KS FLA++SHE+RTP+N ILGFSE++  +    
Sbjct: 825  NQDITQQKLLSRELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRK---N 881

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++ E    Y+  I + G  LL+ I+ I+D+S+IE+    +  S ++L  I+++      L
Sbjct: 882  ISEEKRDIYLELIEKEGHRLLSFISNIVDISKIESNIIHIDNSRVNLNIIIKDIYSKYLL 941

Query: 342  RAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            + +   +++  ++  D + S +  DE  + Q+I NLL NA+KFT   G +          
Sbjct: 942  KLENSGVKLIIEMGLDDADSFIETDENKLVQIISNLLENAIKFTKQ-GTIEFGYSLYEKN 1000

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++  +KD+G GI E E   +   F QG         GVGLGL I + ++    G+  I 
Sbjct: 1001 LKFF-VKDSGIGIEEEEQKNIFDRFTQGRREQTHNL-GVGLGLSIVEGLIKLLNGEVWID 1058

Query: 460  SKLREGVEVIAILPNTRVLN 479
            S++ EG      +P  ++++
Sbjct: 1059 SQIGEGSTFFFTIPYKKIVS 1078


>gi|324327182|gb|ADY22442.1| histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--IVIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|294012871|ref|YP_003546331.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
 gi|292676201|dbj|BAI97719.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
          Length = 418

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 1/233 (0%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A      +  F+A+ SHELRTPL  ILGF E +    +G  ++ET + ++  +    + +
Sbjct: 175 AHAAEKMRVDFVANASHELRTPLAGILGFIETLADPELGK-DDETRQRFLKIMDGEARRM 233

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LI++++ LSRIEA ++ L ESA+ L  +V E + + +    E+  ++  +I P L   
Sbjct: 234 QRLIDDLISLSRIEAEKHRLPESAVDLSGLVAEVVGVFRASHSERGRDVEMEIAPGLPEA 293

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + Q++ NL+ N+VK+   G  + V++         +++ D G GI    +P + 
Sbjct: 294 QGDRAQLSQLLHNLIGNSVKYGRAGTPIRVSLSDGPNGLLRLTVADEGEGIGPDHLPRLT 353

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             F +       A  G GLGL I + I+  H G+  I S L +G  +  +LP 
Sbjct: 354 ERFYRVDSGRSRAVGGTGLGLAIVKHIVERHRGRLDIASVLGKGTTISILLPR 406


>gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1177

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELSEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 731


>gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T]
 gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T]
          Length = 2109

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 134/268 (50%), Gaps = 12/268 (4%)

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               AK  ++  R+RAE  + AKS FLA+MSHE+RTP+N ILG ++++    + P      
Sbjct: 1596 ERKAKERAELARERAEAASRAKSDFLAAMSHEIRTPMNGILGMAQLLARSGLAPG----Q 1651

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             E++  I  SG  LL +++++LD S+IEAG+  L  +  S  + +     ML   + +K 
Sbjct: 1652 AEWVDAIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATMSAQKG 1711

Query: 348  IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402
            + +  +IDP+L   V  D + + Q++LNL  NAVKFTA  G V V       R       
Sbjct: 1712 LVLRLEIDPALPGGVLGDRRALHQIVLNLAGNAVKFTAR-GFVAVRARCLPARAGRCRLG 1770

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + ++D+G GIAE     + T F Q   +I     G GLGL I + ++   GG   +RS+ 
Sbjct: 1771 LEVEDSGIGIAEEAQRRIFTEFTQADGSITRRFGGTGLGLAICRRLVDLQGGSLGVRSRP 1830

Query: 463  REGVEVIAIL--PNTRVLNFIPEDNHES 488
             EG      L  P            H +
Sbjct: 1831 GEGSTFSCELEYPLATPAPRASPRPHAA 1858


>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 948

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P++   +  D   ++QVI NLLSNA+KFT I G + + V    G    I ++D 
Sbjct: 567 LYCFIEPNVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TLRIPL 690


>gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                + AEE N  K+ F+A+M+HE+RTPLNAI+GF+ ++    M  L+ ET   ++ +I
Sbjct: 52  LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDNLDRETRMAFLKEI 109

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + +   LL L+N++LD S+IEA   E ++  + +  ++ E      +R+    I++    
Sbjct: 110 NDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVE 169

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 +  D     QVI NL+ NA+KFT   G V +     S    Y  + D G GI E
Sbjct: 170 RLPQCRLVVDRVRFAQVIGNLVRNALKFT-EMGSVKIGCRRLSNHNFYFYVADTGCGIDE 228

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG      LP 
Sbjct: 229 VGRHAIFERFVK----MNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|251780024|ref|ZP_04822944.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084339|gb|EES50229.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 664

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 132/257 (51%), Gaps = 7/257 (2%)

Query: 235 SDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIEL---ETMGPLNNETYK 288
                KR E        K++F A++SHE +TPLN IL  ++++E    +    L  ++  
Sbjct: 385 LALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDMLEKQSMG 444

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y+  + ++   LL L+N ++D+++I+ G Y+++    ++++++ E ++ +    + K  
Sbjct: 445 KYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAEYTKNKER 504

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
            I    D     +  D + + ++ILNL+SNA+K+T   G + V +          IS+KD
Sbjct: 505 NIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNEVIISVKD 564

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +     +   F Q   ++    +G G+GL + +SI+  H G+  I S+  EG E
Sbjct: 565 NGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINSESDEGTE 624

Query: 468 VIAILPNTRVLNFIPED 484
           +I  LP  ++     ++
Sbjct: 625 IIFTLPIKKIDEEKLDE 641


>gi|37678325|ref|NP_932934.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37197064|dbj|BAC92905.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 598

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 8/250 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I EL+  K        +AEE NLAKS FLA+MSHE+RTP+N ++G ++++  +    
Sbjct: 196 NHYIIELKKTKLALQVAVNKAEEANLAKSMFLATMSHEIRTPMNGVIGMTQLLISD---- 251

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             + + + ++  +  SG+HL+ +INEILD S +E G     +    L  ++       Q 
Sbjct: 252 NKDPSIQTHLDTLLESGEHLMVVINEILDFSNLEQGSLVFVQEEFELSKLLVPIKNSFQP 311

Query: 342 RAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
           +A EK +++    +  P    +  D+  +RQVI NL+ NA+KFT+  G+V V + + S  
Sbjct: 312 QASEKKLQLIFDTNSLPEDLILVGDKTRIRQVIYNLVGNAIKFTSD-GQVKVVLKYESDK 370

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GI    +  +  +F Q  +       G GLGL I + I  + GG   +
Sbjct: 371 NELCIQVSDTGIGIPSHRLKGIFNAFEQADVRTMHDFGGTGLGLSIVKKICLSMGGDITV 430

Query: 459 RSKLREGVEV 468
            S+L  G   
Sbjct: 431 TSELGSGSCF 440


>gi|17231003|ref|NP_487551.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132644|dbj|BAB75210.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 619

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +       L+ E  +E++  ++     L  
Sbjct: 362 ELNEAKSQFISNVSHELRTPLFNIKSFIETLHD-YGEDLSLEERQEFLQTVNHETDRLTR 420

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR   S   + L   + + +   QL A++K IE+ Q + P L  V  
Sbjct: 421 LVNDVLDLSKLESGR-SYSFDGVDLAQAIEQTLRTYQLNARDKGIELIQDVAPGLPLVLG 479

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
           +   + QV+ NL+ NA+KFT+ GG++ +                   I + D G GIA+ 
Sbjct: 480 NYDLLLQVLANLVGNALKFTSSGGKIAIRTYVLNTKSNSPNQPAQVRIEVSDTGIGIAQE 539

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+  H  +  + S++  G      L
Sbjct: 540 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVERHRSRVNLVSEVGVGTTFWFDL 595


>gi|316935503|ref|YP_004110485.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315603217|gb|ADU45752.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 1122

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 155/337 (45%), Gaps = 6/337 (1%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L   + S     +    ++L       A   +    +  L  +L  ++      F     
Sbjct: 570 LTVFAASVGLIGLSLLLIYLQAATANEAQQIELAEVLWKLFFALTIIVGVVSWLFVLARL 629

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
               +  +           I       +     ++ AE  NLAKSR++  +SHELR+PLN
Sbjct: 630 SRQAAEAETRRQTTLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLN 689

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI G+++++E +   P      ++ I  + RS  HL  LI+ +LD+S+IEAGR  LS   
Sbjct: 690 AISGYAQLLEQDNSLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDE 746

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
           +   + + + + M +L+A  K+IE   K    L   V+ADEK +RQV++NLLSNA+KFT 
Sbjct: 747 VRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQ 806

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   V + +     + ++D GPGI   ++  +   F +G++       G GLGL I
Sbjct: 807 Q-GSVQFIVHYRNP-VAELEVRDTGPGIHADDLERIFAPFERGALGAAQPHSGTGLGLTI 864

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           ++ +    GG   + S   +G      L  + V N  
Sbjct: 865 SKLLSGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNPT 901


>gi|123966735|ref|YP_001011816.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201101|gb|ABM72709.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 689

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 25/255 (9%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L+NE   E++G  +     L  
Sbjct: 412 ELNAAQNRFISNVSHELRTPLFNIKSYVETLYD-LKDQLSNEEQLEFLGIANSETDRLTR 470

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++  +  
Sbjct: 471 LVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNASEKNVALAHDIEENIPLILG 529

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------------GQ 401
           +   + QV  NLL N +KF+     + +                                
Sbjct: 530 NFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFPPNDNNEAPQCELVSPLPKV 589

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I D G GI++ +   +   F +   A+ + EQG GLGL I + I+  HGG+  + S+
Sbjct: 590 RIEIADTGSGISQPDQEKIFDRFYRVENAVHT-EQGTGLGLSIVRGIIEKHGGEIRMASE 648

Query: 462 LREGVEVIAILPNTR 476
           L  G      LP  +
Sbjct: 649 LGIGTTFWFDLPLEQ 663


>gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1044

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S FLA+MSHE+RTP+NAI+GF+E +    + P    T   Y+  +H + + +L L+N+I
Sbjct: 655 RSTFLANMSHEIRTPMNAIIGFTEALRETALQP----TQARYLDTVHYAARSMLRLLNDI 710

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD ++++ G  EL     S+ ++ ++ +  L++ A  K +++    DP   + +  D   
Sbjct: 711 LDTAKLDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMR 770

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++Q+++NLL NAVKFT   G V + V +       + + D G GIA  +I  +   F Q 
Sbjct: 771 VQQILVNLLGNAVKFTER-GHVLLRVRYEQ-GVLQLDVHDTGIGIAPEKIHRIFDPFAQA 828

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             +      G GLG  I++ +    GG   + S +  G      LP     N +PE
Sbjct: 829 DASTTRRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLPLPVGENQLPE 884


>gi|327484103|gb|AEA78510.1| Signal transduction histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 570

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 129 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 188

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 189 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 243

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 244 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 303

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 304 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 361

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 362 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 421

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 422 TFTLYIPLQSRLKNIKQSASSSQQI 446


>gi|218441012|ref|YP_002379341.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173740|gb|ACK72473.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 477

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 143/363 (39%), Gaps = 24/363 (6%)

Query: 113 GQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
            Q+  G  W L + L+         + I +  T    +  S LSN  +  A+ +    V 
Sbjct: 135 LQLLNGRYWLLCSNLLTVKGVNLGRVYIAQDITDDQTMFFSLLSNLSIATAIAIGVMTVT 194

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +A   +  +        L   ++            L  +  ++ +   E  +L    E  
Sbjct: 195 IAWYVRRSLQPLKRISQLTQTIS---------AEQLGDARFQLDNAPGEVKELARTFEQM 245

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +   +  +        + + ++ +SHELRTPL  + G+ +       G     T +E +
Sbjct: 246 LTRLSDAWEH-------QRQLVSDVSHELRTPLTIVSGYLQSTLRR--GSNLTPTQREAL 296

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                     + L+ ++L+L+R+++G+      +I+L D + +     +   +  + +I 
Sbjct: 297 EIAGMEADRTIKLLQDLLNLARVDSGQMHFKLESINLNDWLTQVKSKTE---KYSDRQIN 353

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +I P+L  + AD   + QV+ NL+ NA+K++     + V +     +   I + D G G
Sbjct: 354 WEIPPNLIIIKADPDRLLQVLYNLIDNAIKYSDPQTPITVKLDRQ--QQAIIQVCDRGVG 411

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   F +       +  G GLGL I ++ +   GG   + S+  +G      
Sbjct: 412 IPLQDQARIFERFYRVDETRSRSTGGTGLGLSIVKTFVEGMGGNISVSSQPGKGSVFSLT 471

Query: 472 LPN 474
            P 
Sbjct: 472 FPL 474


>gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 835

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 7/266 (2%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +  +   +   K A+  + N  K  FLA +SHEL++PL A++G S +++ + +G L N  
Sbjct: 313 QQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEDKIGQL-NPR 371

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344
              Y   I+RSG+ L+ L+N++LDL+R+E G+ +LS S +++ +I       +  + +  
Sbjct: 372 QIHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICERAYHSITEKYKSK 431

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            ++ ++   +I+P L  + ADE  + Q++ +LL NA+KFT   G+  + V          
Sbjct: 432 SDQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFGLKVNRWED-WLAF 490

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D G GI E     +   F Q    +    +G GLGL + Q +   HGG     SK  
Sbjct: 491 TIWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAG 550

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489
           +G +   +LP +          H S 
Sbjct: 551 QGSQFTLLLPPSPDQEQRSLHAHSSN 576


>gi|288870015|ref|ZP_06112594.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288868794|gb|EFD01093.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 975

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             LS       + F  +V  +      D+L  E    + L  +    A+  + AKS FL+
Sbjct: 405 HWLSLHAIAVENPFNDDVLTICLVKFLDELRQEQARQEQLLRDALASAQAASRAKSDFLS 464

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTP+NAI+G S +     +   ++ T K+    I  S ++LL+LIN+ILD+SRI
Sbjct: 465 RMSHDIRTPMNAIIGMSTI---GQIKLHDSRTVKDCFQKIDTSSKYLLSLINDILDMSRI 521

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVIL 373
           E  + E++         V E   ++  +  E+ I    +  +P  S    D   M+Q+++
Sbjct: 522 ETDKMEIAHDLFDFRAFVEEINQIIYPQTLEREIAYEMRHLEPLESHYIGDSLRMKQILM 581

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTS--GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNA+KFT  GG V V +          YI   I+DNG G++E  +  +   F Q + 
Sbjct: 582 NLLSNALKFTQPGGSVSVDIAEEKRTNGYAYIKFVIEDNGIGMSEEFMDRLFQPFEQEAP 641

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  G GLGL I  S++   GG   + S  +EG      +P   V +   ++
Sbjct: 642 GNARNNVGSGLGLSIVYSLVQLMGGTISVTSHKQEGSRFTVTVPFQLVTDNEEQE 696


>gi|218890756|ref|YP_002439620.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218770979|emb|CAW26744.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 741

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 175/469 (37%), Gaps = 32/469 (6%)

Query: 22  HLGLEYPSKMD--FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT 79
            +            D   +    + L   SP   +  LLVA +                 
Sbjct: 39  RIPAPDRPGDADVVDEAPLRQAADGLRSPSPSSLVLGLLVACL----------------- 81

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
           + V     +   ++     +  E  +     L   +  G+ + +      G         
Sbjct: 82  VCVGCLGWNTVLQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNY 141

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
            +S  +    +   L           +       L+     +    D+++          
Sbjct: 142 LESLRMTREQARGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIH 201

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                Y   +  V  L         I E E       E  ++A+E N AKS FLA+MSHE
Sbjct: 202 HWVTPYRDRQGRVLGLMNGWID---ITERERLARQLREAMRQADEANRAKSVFLATMSHE 258

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA++G  E++          +  +  +   + +   L  LI +ILD+++IE+G  
Sbjct: 259 IRTPMNAVIGILELVLQRLA---PEQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHL 315

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L+   + L  +V     M +  A++K + +  ++D +    V  D    +QV+ NL+SN
Sbjct: 316 TLTPERVRLRHVVESVRRMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSN 375

Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT   G+V + +   S         + ++D+G GIA  +   +   F Q +      
Sbjct: 376 AIKFTER-GQVTIRLQERSLDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-V 433

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           + G GLGL I + ++   GG   + S+  +G  V   L   +    +PE
Sbjct: 434 QGGTGLGLAICRKLVDLMGGDVEMHSEPGKGTRVSLDLLLRQCGPKMPE 482


>gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 796

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 20/269 (7%)

Query: 238 TRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            RK AEE            N AKS+F+A+MSHELRTPL+A++G+SE++  E         
Sbjct: 253 ERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSEMLGEELEDIGQAAL 312

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +  I  + +HLL+LIN++LD+S+IEAGR   S    ++ D++R+         ++K
Sbjct: 313 LPD-LRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSDSTGSLVEKK 371

Query: 347 NIEIFQKI----DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---R 399
                          L S+  D+  +RQ +LNL+ NA KFT   G + +TV         
Sbjct: 372 GNRFVLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTER-GTITLTVRRHREEGAD 430

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D G G+ E +I  +   F Q   +      G GLGL I ++     GG   + 
Sbjct: 431 WLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCRTMGGDIGVA 490

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S    G      LP T      P    E+
Sbjct: 491 STPGAGATFTIRLPATLRPEDAPPSEAEA 519


>gi|83816112|ref|YP_444718.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
 gi|83757506|gb|ABC45619.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
          Length = 434

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 138/346 (39%), Gaps = 7/346 (2%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                 SA L++ +       + L     +     ++     A++   +    +   L  
Sbjct: 94  AALYRPSANLIVQVGQPPPPLYSLAQRSQVVLVLGMILALVLALIGSFIAAYQVTTPLTR 153

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  +        +++ S  AE  DL   L  A     E  +  E     +S F+ +
Sbjct: 154 ISETARRVADGKLTGKIQVESRAAEFQDLAESLNRASDTFREKIEELERMTRLQSEFIGN 213

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE+R P+ +I G+ E +       L++E  K Y      +   L NL N+++D++R+E
Sbjct: 214 VSHEVRNPIFSISGYLEAL---GTPGLDDEQRKMYSEKALTNLNRLQNLFNDLIDIARLE 270

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
                ++ S   L D+V E   ML+ +A+EK   +  + D S   V AD   +RQV+ NL
Sbjct: 271 YKEDLINRSVFDLKDLVDEVAEMLRPKAEEKG--LDLEADVSRFFVHADRSRVRQVLTNL 328

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + N + +T  GG V   V     +   + + D G GI E  +  +   F +         
Sbjct: 329 IENGIAYTG-GGSVRCRVQRRLDK-VRVEVVDTGQGIDEDHLDRIFERFYRVDPDRSRES 386

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            G GLGL I + I+  HG    + S    G      LP       +
Sbjct: 387 GGTGLGLSIVKQILQAHGEDIHVESTKGRGTRFWFELPYEPEPEAV 432


>gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB]
 gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 901

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 8/275 (2%)

Query: 210 SNVKILSCQAE--KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           S +K +S + E  +D L   ++V  +  + +R  AE   LAKS FLA MSHE+RTPL+ +
Sbjct: 491 SEMKAMSAELEHYRDHLEQLVKVRTADLEASRAEAERLALAKSEFLAKMSHEIRTPLHGV 550

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG + +               E    I  SG  LL +IN+ILD S++EAG  ++  + I 
Sbjct: 551 LGMAHI---GGRNTSEGSKAHEAFAKITHSGNLLLGIINDILDFSKMEAGMLKIESTDID 607

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L  I+ E + ++Q RA  K + +  ++  +L     +D   +RQ++LNLLSNAVKFT   
Sbjct: 608 LPAILAESMELMQERANAKKLSLQLRVAENLPAHCQSDSLRLRQILLNLLSNAVKFTVS- 666

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +  G      + D G GI   +   +   F QG  +      G GLGL I  
Sbjct: 667 GSVTLDASF-DGHQLIFKVSDTGIGITHEQSSKIFNPFEQGDNSTTRRFGGTGLGLAITS 725

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            ++    G   + S    G      LP   ++   
Sbjct: 726 HLVKLMEGTIHLESTPDNGSRFEIRLPYHPIVAES 760


>gi|294625969|ref|ZP_06704580.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599707|gb|EFF43833.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 767

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 145/317 (45%), Gaps = 23/317 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
             +     L  Q +    +    L+ +    +           +   ++ + Q      +
Sbjct: 334 GIWSASQTLRFQVLPPWWLSPWGLSLLALLTVCVIAAAILLYRRRLRRLNAWQ------L 387

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           A  +          + AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++      
Sbjct: 388 AMHKQ---------EVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 434

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + Y   I R+G HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE
Sbjct: 435 KQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQE 494

Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
           + +    +I      +   D   +RQ++LNLL+NA+KFT   G V + +      +G   
Sbjct: 495 RGLRFSLEIGLLGDITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 553

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            + D GPGI   +   +   F QG  A   S   G GLGL I Q +    GGQ  + S+L
Sbjct: 554 EVADTGPGINVEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRL 613

Query: 463 REGVEVIAILPNTRVLN 479
             G   +  LP   V +
Sbjct: 614 GAGTRFVVELPLRWVAS 630


>gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
 gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
          Length = 1129

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 335 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 394

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 395 AGDLDETMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLIIRKQND 451

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GP++   +K  +  I  SGQ 
Sbjct: 452 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQR 510

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++   A+ L    R  + +      +K + I  ++      
Sbjct: 511 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 570

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 571 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHI 628

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 629 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLA 683


>gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
 gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
          Length = 759

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    E+R+ AE+  L K  FL +MSHE+RTPLNAI+GFS+++  E     ++
Sbjct: 516 IQELKDHEQELIESRELAEQAEL-KQSFLNNMSHEIRTPLNAIVGFSDMLANEP--EFSD 572

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I+ + + LL L+ ++L+LSRIE+G         S+  ++ +      L  Q
Sbjct: 573 EERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 632

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              ++  +   P    V  D   + QV+ N L+NA KFT  G         +     ++ 
Sbjct: 633 PP-LQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLY 691

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   E   +   F +         QGVGLGL I   I+   GG+  +RS+   
Sbjct: 692 VEDTGIGIPHSEQKMIFERFYK----RSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGR 747

Query: 465 GVEVIAILP 473
           G     +LP
Sbjct: 748 GSRFTVVLP 756


>gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 123/243 (50%), Gaps = 7/243 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN------NETYKEYIGDI 294
           R  E    K+ F++ +SHELRTPL +  G  +++  ++    +      +   ++ +   
Sbjct: 467 REREVEQMKNEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIRDMSSVERDLLQRA 526

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   LL L+N++LD+++IE G+ +L    ++  +I R  I  L   A+++ + I   +
Sbjct: 527 LTNTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLASFARQQQVTISLDV 586

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P+L  V  D   + QV++NLLSNA+KF+  G +V V+V          S++D GPGI+ 
Sbjct: 587 PPNLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAHEQ-GMVRFSVRDWGPGISR 645

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F Q   +  +   G GLGL I++ ++  HGG+  + S +  G      +P 
Sbjct: 646 ADQLKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGRIWVDSDVGFGSTFSFTVPL 705

Query: 475 TRV 477
             V
Sbjct: 706 AAV 708


>gi|320585939|gb|EFW98618.1| sensor histidine kinase response [Grosmannia clavigera kw1407]
          Length = 2110

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +K+RFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1415 KLKEAMDSKTRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQNSASS 1470

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            LL +IN+ILDLS+++AG  +LS        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1471 LLMIINDILDLSKVDAGMMKLSFEWFHTRSLIEDVNELVSTMAIGKGLELNYIVEADVPG 1530

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRV-----HVTVGWTSGRGQ-YISIKDNGPGIA 413
             V  D   MRQV+LN++ NA+KFTA  G V      V       R     S+ D G G  
Sbjct: 1531 WVKGDRVRMRQVLLNVIGNAIKFTAR-GEVFSCCRVVRPSPEPDRIVLEFSVTDTGQGFT 1589

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-- 471
            + E   +   F Q   +      G GLGL I++ ++  HGG+    ++  +G        
Sbjct: 1590 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAEPGKGSTFTFSAL 1649

Query: 472  --LPNTRVLNF 480
              LP       
Sbjct: 1650 FGLPTESDHPS 1660


>gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia sp. Ejp617]
          Length = 992

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 9/258 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 493 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 548

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++            +K + 
Sbjct: 549 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRLT 608

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  ID  +   +  D   ++QVI NLL+NA+KFT  GG +     +  G      ++D+
Sbjct: 609 LWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 666

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + +M    G   + S+   G + 
Sbjct: 667 GVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 726

Query: 469 IAILPN--TRVLNFIPED 484
           I  +P   +RV+   P D
Sbjct: 727 IVRIPLYNSRVVTLEPRD 744


>gi|255535845|ref|YP_003096216.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342041|gb|ACU08154.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
          Length = 371

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 151/336 (44%), Gaps = 9/336 (2%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
              +++ + +  +  F +  A+         A+   +  S +V  I+             
Sbjct: 44  YVLIILDVQMPGMDGFEVAEAISGYSRAKETAIIFLSAASANVSLITKGYSSGGLDYISK 103

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  ++    VK      E+   + E++ A     E RK AE     K  F++  SHEL+
Sbjct: 104 PVDMNILLLKVKTFYRIYEQSRALNEMQNALREEIEFRKEAE---RKKDEFISIASHELK 160

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TP+ +I G+ +++E       + ET K  +G +    + L  L+ ++LD+S+IE+G+ + 
Sbjct: 161 TPMTSIKGYIQLLERSI-EKNDIETTKIRLGKVQNQIEKLNLLVADLLDISKIESGKLKF 219

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           ++      +++   + ++Q       I    +++ S   V+ADE  + QVI+N ++NA+K
Sbjct: 220 NKKHFCYDEVLSHILEVMQQSNPHITIMKIGQVEDS---VYADEMRIEQVIINFITNAIK 276

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++     +HV +        Y +++D G G++      +   F +         QG+G+G
Sbjct: 277 YSPGSEEIHV-LTEIQDGHIYCAVRDFGIGMSPEHQNKIFDKFYRIEE-TSERFQGLGIG 334

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           L I Q I+  H G   ++S   +G E    LP T V
Sbjct: 335 LYICQEIIGRHEGTIGVKSTPGQGSEFYFTLPLTPV 370


>gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 882

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 155/364 (42%), Gaps = 8/364 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIM 180
             + +    + +     +  ++   IA ++  L               +  +A + ++I 
Sbjct: 167 GYVEVEISFSDSAYEQVLVAASAFGIATAVILLVYASTSLISRQINRSISELADTVESIQ 226

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           + +    +         S  + I     +        + E     +EL+         + 
Sbjct: 227 AGNFSARARIDDEQELGSLASGINVMASQIARSKDDLEREVAIATSELKQKNEALTIAQA 286

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A   N AKS FLA+MSHE+RTPLN I+GF +++    +         +YI     + + 
Sbjct: 287 EAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKVDS----QQNQYISTAQVAAKS 342

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
           L+ LIN ILD SRIE+G+  L +  I + D++ E   +    A EK +E+      SL  
Sbjct: 343 LIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAFEKGVELLFFPAQSLPS 402

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIP 418
           ++  D    +Q+I NLLSNA+KFT   G + + + + +      IS+ D+G GI++  I 
Sbjct: 403 TLMLDANVFKQIIGNLLSNAIKFT-QHGDIQLHMNYFAENRAIAISVLDSGVGISQEVIN 461

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F QG         G GLGL I +S++  HGG     ++   G      +  ++  
Sbjct: 462 DIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPEGGARFDLTIQASQRK 521

Query: 479 NFIP 482
              P
Sbjct: 522 PAPP 525


>gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1364

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 127/310 (40%), Gaps = 12/310 (3%)

Query: 173  ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            A++   I S  +  + +  +  T L  F    + +    +  +         I  ++  K
Sbjct: 770  AMNNDRIWSKEITSLQITSLQITILPPFWATGWAIALYIIAGILLAYGVIRFIFRIQQKK 829

Query: 233  SLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               ++ R   ++  E +  K RF  ++SHE RTPL  I+   E +        +    ++
Sbjct: 830  LEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMTPLEKLMKTEKDMES----QQ 885

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
             +  I+R+   LL L+N++LD  +I+     L  S   ++  VR+     +  +++K I 
Sbjct: 886  ILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIVPFVRDVAYSFKELSEQKRIH 945

Query: 350  IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWTSGRGQYISI 405
                   +   +  D   + +++ NLLSNA KFT  GG + V     +         I +
Sbjct: 946  FSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTISVTLSLRLEKEGENKLVIEV 1005

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
             D+G GI   +   +   F Q S   K     G G+GL + +  +  H G   ++S+   
Sbjct: 1006 SDSGIGIPADKQGAIFDRFYQVSSPDKGNPVVGTGIGLHLCREFVRMHHGTITVKSEPGA 1065

Query: 465  GVEVIAILPN 474
            G      LP 
Sbjct: 1066 GSTFTVTLPV 1075


>gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid
           [Pseudomonas entomophila L48]
          Length = 784

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 128/283 (45%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     + L  +    +E R+RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTNELKASNSRLSQSNQELEEARRRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALTLDSGLAA----EQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A               S+V  D   +RQ++ NLLSNA+K
Sbjct: 375 ERIPFDLGAMVEDTANLLSQNAAPSVELTCLIAPDFPSTVLGDPTRVRQIVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    + + D G GI E     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVRLTSIVGG-VRLEVSDTGIGIPEEAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L + +++     G   I+S+   G    A LP       IP  
Sbjct: 493 LALTRNLCKAMQGHLNIQSETGFGSRFSAELPLPAHTEAIPPA 535


>gi|17231597|ref|NP_488145.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17133240|dbj|BAB75804.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 550

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 14/341 (4%)

Query: 146 LIALSISAL--SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            I +S++ +  + F L     +     V  +    + S+++     + +           
Sbjct: 138 WIVMSVTTVENALFGLEEIKLILIVLTVGLIGASLVASLYLAPYLASPVEELRDYALNIH 197

Query: 204 TYHLFKSNVKILSCQAEK------DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           ++H  +        +         D ++  L+V     +   K A+  N  KS+FLA+ S
Sbjct: 198 SHHTSRRVPDNFKIREFNQLAQAIDQMVDRLKVWSEEIETAWKDAKSANQVKSQFLATTS 257

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELR PLN I+    +++       N E   E++     +  HLL +INE+LD+S+IEAG
Sbjct: 258 HELRNPLNIIINCVRLVKDGLCD--NREEEIEFLQRADETAIHLLGIINELLDISKIEAG 315

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +    + L   + E I +  +  Q+K +++   +      V AD   ++QV++N++ 
Sbjct: 316 KLSVVSQPLDLRQTLLEVINLQSVNVQQKGLQLKTNLGTEPIPVKADAAKLKQVLINIIG 375

Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA KFT  GG      +           +SI D G GI   +   +   F   + +    
Sbjct: 376 NATKFTDEGGISIATTIQTRIEGKSQVMVSITDTGLGIEPAQQHKLFRPFVMVNGSTTRK 435

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            +G GLGL I+++++   GG   + S  + +G  V   LP 
Sbjct: 436 FEGTGLGLAISRNLIELMGGTITLESAGINQGTTVNITLPL 476


>gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 775

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELPHLPDELGVIADRQRLVQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++     +S+ D G GIA   +  +   F +       + +G
Sbjct: 530 NAIKYNRPDGQVRIEVDRSAEH-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 587 TGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALPFVAVHAPT 630


>gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1126

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 14/277 (5%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +  ++  I E +  +    ++R +A E    KS FLA+MSHE+RTPLN I+G + ++   
Sbjct: 440 RFVRNLDITERKSFEFSLIQSRTQALESANLKSEFLANMSHEIRTPLNGIIGMTGLLLDS 499

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +          +   I  SG  LL+LI++ILD S+IEAG+ E      +LI+++ +   
Sbjct: 500 NLTY----EQTRFAEAIRSSGDSLLDLIDDILDFSKIEAGKIEFESFDFNLINLLDDFDD 555

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            + LRA  + +E+  K++P++   +  D   +RQ++ NL  NA+KFT   G + + V   
Sbjct: 556 TMALRAYGRGLELLCKVEPNVPKWLRGDPGRLRQILTNLTGNAIKFTHA-GEITLRVTLV 614

Query: 397 SGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S+ D G GI+      +   F Q   +      G GLGL I++ +    
Sbjct: 615 KDGTTNCILRFSVCDTGIGISPVNTRNLFNKFTQADTSTTRKYGGTGLGLAISKQLTELM 674

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GG+  + S+  +G E    +     L   P   HE+T
Sbjct: 675 GGEIGVTSQESQGSEFWFTV----RLEIPPPGTHETT 707


>gi|15641456|ref|NP_231088.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588029|ref|ZP_01677780.1| sensor histidine kinase/response regulator [Vibrio cholerae
           2740-80]
 gi|153817899|ref|ZP_01970566.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153822685|ref|ZP_01975352.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227081617|ref|YP_002810168.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229504980|ref|ZP_04394490.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
 gi|229511351|ref|ZP_04400830.1| signal transduction histidine kinase [Vibrio cholerae B33]
 gi|229518469|ref|ZP_04407913.1| signal transduction histidine kinase [Vibrio cholerae RC9]
 gi|229607983|ref|YP_002878631.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848565|ref|ZP_05237915.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298498476|ref|ZP_07008283.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|298499372|ref|ZP_07009178.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9655945|gb|AAF94602.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547724|gb|EAX57816.1| sensor histidine kinase/response regulator [Vibrio cholerae
           2740-80]
 gi|126511526|gb|EAZ74120.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126519805|gb|EAZ77028.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227009505|gb|ACP05717.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229345184|gb|EEO10158.1| signal transduction histidine kinase [Vibrio cholerae RC9]
 gi|229351316|gb|EEO16257.1| signal transduction histidine kinase [Vibrio cholerae B33]
 gi|229357203|gb|EEO22120.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
 gi|229370638|gb|ACQ61061.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844270|gb|EET22684.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297541353|gb|EFH77404.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|297542809|gb|EFH78859.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 572

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKPSTSSSQQI 448


>gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 572

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 16/239 (6%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIE------------LETMGPLNNETYKEYIGDIHRS 297
           S FL+ +SHE+RTPL ++LGF+ +I+                  L  E  ++ +  I   
Sbjct: 337 SDFLSMVSHEIRTPLTSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAE 396

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+ L +LIN++LDL+++EAG+       +   ++VR  +       Q  NI +  +I+  
Sbjct: 397 GERLKHLINDVLDLAKLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGR 456

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGE 416
           L  V  D   + QV++NL+SNA+KFT  G   +V       G    I + D G GI E E
Sbjct: 457 LPLVRGDRDRLIQVLVNLVSNAIKFTDQG---YVACRARAQGNTIVIEVSDTGIGIPESE 513

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              V   F Q    + +  +G GLGL I + I+ +HGG+    S+   G      LP  
Sbjct: 514 QGKVFEKFNQIGGTLTNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLPIA 572


>gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 239 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 298

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 299 EEGHPTYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 355

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V++     
Sbjct: 356 QELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIER-DD 414

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 415 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 474

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 475 TSGGRGKGATFTVRLP 490


>gi|118476336|ref|YP_893487.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415561|gb|ABK83980.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 463

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGQGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|187923860|ref|YP_001895502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187715054|gb|ACD16278.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 12/273 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + + I E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+E   M 
Sbjct: 263 QREAIEERERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MI 319

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + D++   + + +
Sbjct: 320 PGLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVIDSVLELFR 379

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              Q K  ++    D     V AD   ++Q++ NL+ NA KFT  GG ++V         
Sbjct: 380 SEIQVKQQDVHVHKDAQHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-RDERMH 438

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS++D G GI   +I  +  +F QG+  +     G+GLGL I +++   HGG    +S
Sbjct: 439 VQISVEDTGIGIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498

Query: 461 KLRE--GVEVIAILPNTRVLN-----FIPEDNH 486
                 G      LP            +P++ H
Sbjct: 499 -PGAHCGATFAITLPTAAAPEVTSPVVVPDEVH 530


>gi|297579033|ref|ZP_06940961.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297536627|gb|EFH75460.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 572

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKQSASSSQQI 448


>gi|262169261|ref|ZP_06036953.1| signal transduction histidine kinase [Vibrio cholerae RC27]
 gi|262022074|gb|EEY40783.1| signal transduction histidine kinase [Vibrio cholerae RC27]
          Length = 570

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 129 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 188

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 189 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 243

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 244 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 303

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 304 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 361

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 362 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 421

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 422 TFTLYIPLQSRLKNIKPSTSSSQQI 446


>gi|223936260|ref|ZP_03628173.1| integral membrane sensor signal transduction histidine kinase
           [bacterium Ellin514]
 gi|223895122|gb|EEF61570.1| integral membrane sensor signal transduction histidine kinase
           [bacterium Ellin514]
          Length = 480

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 133/331 (40%), Gaps = 17/331 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + A+ N ++    F     V+VA++    +               AL+    I+    + 
Sbjct: 160 VQAVLNRLVILVAFALTAMVIVAITGGYWLVRK------------ALAPVDQISKSAEQI 207

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +  L  +        ELE      +    R E+      RF+A  SHELRTPL  + G 
Sbjct: 208 TLHNLRERLPVAKTGDELERLSISLNNMIVRLEDAFQQNRRFIADASHELRTPLTIMRGE 267

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E I    +        +     I    + L  ++  +  +SR++AG  +       L  
Sbjct: 268 LEAI---VIQNQIAPEVQTKAVSILEEVERLTRIVEGLFAISRLDAGEAQKEMVRFDLAK 324

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +       + L A++K I +       +  V  D   M+QV++NLL NA+K+T  GG+V 
Sbjct: 325 LATNTAEQMCLLAEDKGIVVRCDNAQEV-MVEGDRARMKQVVVNLLDNAIKYTPSGGKVT 383

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           ++V         + ++D G GI     P +   F +   A      G GLGL I +SI A
Sbjct: 384 LSVSAQ-SGRASLEVEDTGIGIPAEAKPRIFERFFRVDKARSRDLGGAGLGLSIVKSICA 442

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            HGG+    S   +G   +  LP +R  N +
Sbjct: 443 AHGGKVDFYSTEGKGSRFVVELPLSRSNNEM 473


>gi|89897368|ref|YP_520855.1| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51]
 gi|89336816|dbj|BAE86411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 484

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 9/316 (2%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L  A   +   +V+A     ++S  ++       L         I    F   ++ ++ +
Sbjct: 170 LWIAFVGALLGIVLATILSMLISRKLIRP-----LVKMEETAKNIAEGDFGRQIE-VASE 223

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E   L     V  +      +  E  +  +   L+ +SHELRTPL  I GFSE +    
Sbjct: 224 DEVGRLAHSFNVMSAELKAKIEAIERYDRLRQELLSDVSHELRTPLTVIQGFSEAVLDGL 283

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   + E  + Y+  I    + L  L++++LDL  +E          + L  +V+  +  
Sbjct: 284 V--KSKEQEQNYLKLIIDETERLRRLVDDLLDLKALEEVETFDEMDYVVLNKLVQISVER 341

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  A+ + IE+   +  +  ++W +   ++QV+ NL+ NA+K +  G +V + + +   
Sbjct: 342 FKQLAETREIELEIILPEAPVTIWGNSDRLKQVLTNLVDNAIKHSESGTKVGIQLEF-EN 400

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I++KD+GPGI +GE+  +   F +   +      G GLGL I + I+  H G+ L 
Sbjct: 401 DWAFIAVKDSGPGIPQGELENIWERFYKIDKSRSRRGTGTGLGLSIVKKIIEMHNGKVLA 460

Query: 459 RSKLREGVEVIAILPN 474
           RS++ +G      LP 
Sbjct: 461 RSRIGQGTVFTVYLPL 476


>gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 497

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            ++AKS+FLA+MSHE+RTP+  ILG  ++++   +    ++     I  I   G+ LL +
Sbjct: 20  ADMAKSQFLANMSHEIRTPIIGILGSLDLLDQSDL----SQQQATNISIIRECGEQLLQI 75

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ ILD+S+IE+     +    +L +++   +  +    + K ++    ID  +   +  
Sbjct: 76  VDNILDVSKIESDPVTPNLEPCNLGELIIATVNRVDTLLKRKGLDFKLNIDSRIPAKIML 135

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVL 421
           D+  ++QV+LNLL N++KFT   GRV +      G       +I D G GI    +  V 
Sbjct: 136 DKTKLQQVLLNLLYNSIKFTPQ-GRVELKAKIQPGDSYRLLFTISDTGIGIPSSFVERVF 194

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             F Q   +      G GLGL I + ++    G+  + S    G  V   +P 
Sbjct: 195 EPFTQADNSNSRQYGGAGLGLYICKKLLELMEGEISLSSMPGVGTTVSFSIPL 247


>gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 480

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 12/240 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL ++  + E +E   +   + ET   +I         ++
Sbjct: 222 DKAERERRLFVSNVSHELRTPLTSVKAYLEALEDGAI--EDKETASSFINVSLTETNRMI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDI-------VRECIIMLQLRAQEKNIEIFQKID 355
            +I+++L LSR++  R  L++  I+LI         + + +          N  + +K  
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D   + QVI N++ NA+K++  GG + ++V         ISI D G GI + 
Sbjct: 340 EQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESD-VLISISDQGMGIPKS 398

Query: 416 EIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  +   F +    +  S   G GLGL I   I+  HGG     S+   +G      LP
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  +  + AEE N  K+ F+A+M+HE+RTPLNAI+GF+ ++    M  L+  T   
Sbjct: 47  RRVKTLRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDNLDKATRMA 104

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++ +I+ +   LL L+N++LD S+IEA   E ++  + +  ++ E  +     +    I+
Sbjct: 105 FLKEINENKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQ 164

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +          +  D     QV+ NL+ NA+KFT   G V +     S R  Y  + D G
Sbjct: 165 VEFVEKLPQCRLVVDRVRFAQVVGNLVRNALKFTEK-GSVKIGCRQLSNRNFYFYVADTG 223

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E     +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG    
Sbjct: 224 CGIDEEGRHAIFERFVK----MNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFY 279

Query: 470 AILPN 474
             LP 
Sbjct: 280 FTLPV 284


>gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  ++ F+A++SHELRTPL  + G+SE I        ++E  KE+   I+     L  
Sbjct: 338 RLDKMRTDFVANISHELRTPLVTLQGYSEAIIDGI--TESDEATKEFASIIYDESLRLAR 395

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDL+RIE+G+  +  ++  + D +   +      A EK I +       L  + A
Sbjct: 396 LVNDLLDLARIESGKETMHFTSFDIGDFLPRVMRKFNQMASEKEIRLQTDAPHRL--IEA 453

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NL+ NA+  T   G + +     +     I + D G GI + ++P V   
Sbjct: 454 DGDRLEQVFTNLIGNAIAHTDS-GEIRIEATEETDG-LRIQLTDTGHGIPKEDLPFVFER 511

Query: 424 FGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A  S  + G G+GL I ++++  H G+  + S L  G      LP  +  N 
Sbjct: 512 FYKADKARTSGSKTGTGIGLAIVKNVVDAHHGKVSVSSTLGVGTTFEIYLPFEQPHNS 569


>gi|91778296|ref|YP_553504.1| periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91690956|gb|ABE34154.1| Periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 662

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 169/452 (37%), Gaps = 23/452 (5%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
               P +   D +++  L+ +             +LVA         P+F        A 
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYWPNIPSPPLFIACFGFYAAA 60

Query: 83  --YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
                 L +  +     +     +++   L    +       +         +P+     
Sbjct: 61  NCGGLALWICNRRYPELVSP-RGWIYLHALRGVLLYSAPGIAVWFAF----QSPQTDLPL 115

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALSF 199
               +L+ L+     +       F +  P ++         +       LA +LA     
Sbjct: 116 LHTVMLVTLAAGVFMSNGFDLLNFSTAIPFLLFPSIVMHFGTHTFDRTILAIVLAFFFCA 175

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                    K   +++  + ++  L              ++ AEE +LAK+RF A+ SH+
Sbjct: 176 INVYALSYRKLFQQVVQARVDQQYLAES-------LAAQKRVAEEASLAKTRFFAAASHD 228

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LR PL+AI   +  +      P  +    E+   I  + + L  L N++LDL+R+E+G  
Sbjct: 229 LRQPLHAIGLLAASLNDAAATPAQHAKTAEH---IVYNVEALNQLFNQVLDLARLESGVT 285

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++      L ++        + +A  K + +     P+   V  D   + +V+ NLLSNA
Sbjct: 286 QVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTTMVVHDDPVLLERVLSNLLSNA 343

Query: 380 VKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           V++T   G + + V       G +I ++D+G GI   E   +   F Q +   + A QG 
Sbjct: 344 VRYTEE-GAIWLGVRRAGRPAGGHIEVRDSGIGIPVEEQERIFEEFYQVANPQRDARQGH 402

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGLP  + ++   GG+  +RS    G     
Sbjct: 403 GLGLPTVKRLVEMLGGKLQLRSAPGRGSVFRF 434


>gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1504

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 17/269 (6%)

Query: 230  VAKSLSDETRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             A+   +  R R  +            N  K  FLA +SHELR+PLN ILG++++++   
Sbjct: 1100 EAQKQLEVERDRLFQLEQAARAEAERANRIKDEFLAILSHELRSPLNPILGWTKMLQSRK 1159

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                        +  I R+ +    LI+++LD+++I  G+  L  + ++L+ ++   I  
Sbjct: 1160 FNETKTAQ---ALASIERNVKLQTQLIDDLLDIAKILRGKLSLDVTPVNLLFVIESAIDT 1216

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   A  K+I++   + P++  V  D   ++Q++ NLLSNA+KFT  GGRV + +     
Sbjct: 1217 VNTAAIAKSIQLHPVL-PNIGQVSGDSNRLQQIVWNLLSNAIKFTPKGGRVEIRLERVDE 1275

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            +  +I + D G GI    +P +  SF Q  ++I     G+GLGL I + ++  HGG    
Sbjct: 1276 Q-AHIIVSDTGKGINPEFLPHIFESFRQEDVSITRKYGGLGLGLAIVRQLVEAHGGTITA 1334

Query: 459  RSK-LREGVEVIAILPNTRVLNFIPEDNH 486
             S     G      LP   +   I + + 
Sbjct: 1335 DSPGEGLGATFTVQLPLLNLQPEIKQTDD 1363


>gi|229070714|ref|ZP_04203944.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
 gi|228712384|gb|EEL64329.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
          Length = 448

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFNVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|229072176|ref|ZP_04205384.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
 gi|228710914|gb|EEL62881.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
          Length = 484

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASTLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|228908985|ref|ZP_04072815.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
 gi|228953539|ref|ZP_04115582.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229080447|ref|ZP_04212968.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228702749|gb|EEL55214.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228806123|gb|EEM52699.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228850707|gb|EEM95531.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
          Length = 448

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFNVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|254445933|ref|ZP_05059409.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260241|gb|EDY84549.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1132

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
            LA+A          + + N ++   +   +DL+ E     +  +     AE+    KS F
Sbjct: 842  LASANYTLAESKEEIERQNAELARHRNILEDLVKE---RTAKMEAALLLAEDSERLKSAF 898

Query: 253  LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            LA++SHE+RTP+NAI+GFS +++      + +    EY+  I  +   L++LI++I+++S
Sbjct: 899  LANVSHEIRTPMNAIVGFSSLLDD---PSVTHAERSEYVELIRENSDALISLIDDIVEVS 955

Query: 313  RIEAGRYELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQV 371
            RIE+ +         L   + E     +  +     I    +     + +  DE    Q+
Sbjct: 956  RIESRQITSKRRPFDLDLKLDELQQFFKAESGSRVTIRFLNRNLDRPTIIETDELLFGQI 1015

Query: 372  ILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            + +L+ NA+K+T  G    V  G+   G+   + + D G GI E E   +   F + +  
Sbjct: 1016 MTSLIGNAIKYTKQGS---VDFGYQIDGQNIILYVSDTGIGIPEEEHEKIFDRFYKVTQK 1072

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +    +G+GLGL I +S++    G+  ++SK   G      +P+ +  +  P
Sbjct: 1073 VSELYRGLGLGLSITKSLVNLLDGEIWLKSKPGSGSTFYVKIPHKKTDSPNP 1124


>gi|170700649|ref|ZP_02891646.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170134421|gb|EDT02752.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 730

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L  E R      N AK +FLA + HELR PL  I  
Sbjct: 316 SAVEVTEHVAAREKLVAANAERDRLLGELRD----ANQAKDQFLAVLGHELRNPLTPISL 371

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     I  I R   H++ LI+++LD+SRI  G+  L + ++ L 
Sbjct: 372 ALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRLA 426

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +    DP  +    D   + QV+ NLL+NA K+T  GG +
Sbjct: 427 DIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKYTMPGGDI 485

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V     +     I + DNG GI    + ++   F +     K A  G+G+GL + +S++
Sbjct: 486 TVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGLALVRSLV 545

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476
             HGG     S     G      LP  R
Sbjct: 546 NLHGGTVRADSAGPGCGSTFTIALPEYR 573


>gi|84387676|ref|ZP_00990693.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84377521|gb|EAP94387.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 606

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 8/250 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I EL+  K        +AEE NLAKS FLA+MSHE+RTP+N ++G ++++  +    
Sbjct: 204 NHYIIELKKTKLALQVAVNKAEEANLAKSMFLATMSHEIRTPMNGVIGMTQLLISD---- 259

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             + + + ++  +  SG+HL+ +INEILD S +E G     +    L  ++       Q 
Sbjct: 260 NKDPSIQTHLDTLLESGEHLMVVINEILDFSNLEQGSLVFVQEEFELSKLLVPIKNSFQP 319

Query: 342 RAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
           +A EK +++    +  P    +  D+  +RQVI NL+ NA+KFT+  G+V V + + S  
Sbjct: 320 QASEKKLQLIFDTNSLPEDLILVGDKTRIRQVIYNLVGNAIKFTSD-GQVKVVLKYESDK 378

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D G GI    +  +  +F Q  +       G GLGL I + I  + GG   +
Sbjct: 379 NELCIQVSDTGIGIPSHRLKGIFNAFEQADVRTMHDFGGTGLGLSIVKKICLSMGGDITV 438

Query: 459 RSKLREGVEV 468
            S+L  G   
Sbjct: 439 TSELGSGSCF 448


>gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 419

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+ A+ L    R+ +   +  KS F+A+MSHE+RTPLNAI+GFS ++    +   + 
Sbjct: 166 VTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASSE 221

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +   +     D++RE   + + +  
Sbjct: 222 EERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLN 281

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++E+  +       ++++ + + QV+ NLL NA+KFT   G + +             
Sbjct: 282 NSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFT-ESGEIRLGCSLKGTEEVCFV 340

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG   + S++  
Sbjct: 341 VSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSEINR 396

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 397 GSTFSFVLPR 406


>gi|303248550|ref|ZP_07334807.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490080|gb|EFL50001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 695

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 165/394 (41%), Gaps = 35/394 (8%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            +     A    W    +    +      +++      +   ++ L++      +F  F 
Sbjct: 296 RIFYVSPAYETLWGRPPVSLYASPQSWLDSVHPEDRDKVLDHMTRLASGPPARGIFPDFR 355

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            V    S + + + +   I  +G ++        IT  + ++ +++       +D++ + 
Sbjct: 356 VVRDDGSVRWVQARYFPVIGDSGGVSRLAGTLEDITDRV-QTRLELERVNERLEDMVRKR 414

Query: 229 EVA-KSLSDE------TRKRAEEENLAKSR-----------FLASMSHELRTPLNAILGF 270
                 +++E       R+ AE                   FLA++SHE+RTP+N ILG 
Sbjct: 415 TQTLNRMNEELIHEVLERREAEASMARAKEAAEAASRAKSAFLANISHEIRTPMNGILGM 474

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++    +    ++  KE++ DI  S   LL LIN++LD SRIEA R EL+  A  L  
Sbjct: 475 AQILGQTGL----SDDQKEFLKDIEGSASSLLALINDLLDFSRIEAERVELAHEAFGLRA 530

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++      +   A+EK +E+   I P +   +  D   +RQV+ NL+ NA+KFT  GG V
Sbjct: 531 VLASVEAAMGAPAREKGLELSVDISPDVPDMLLGDADRLRQVLTNLVGNAIKFTDHGGVV 590

Query: 390 H----VTVGWTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
                V     +        +    S+ D G GI   +   +  +F Q   +      G 
Sbjct: 591 VQAQCVEACRPAEAITRGMRQELLFSVSDTGIGILPEDTSRIFEAFTQADGSYTRRFGGT 650

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL I + ++A  GG+  + S   +G      L
Sbjct: 651 GLGLAITRRLVALMGGELGVDSVPDQGSVFTFSL 684


>gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913]
 gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1103

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 123/221 (55%), Gaps = 6/221 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A+MSHE+RTP+NAI+GFS+++    +    N+  ++ I  ++ + + LL+L+N+ILD 
Sbjct: 543 FMANMSHEIRTPMNAIIGFSDILMDSPL----NKEQQKQIITVNNAARSLLHLLNDILDS 598

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQ 370
           +++E G+ E+ +   +L +++   +    L A+ K++++  KI  ++    + D+  +RQ
Sbjct: 599 AKLEKGKLEIQKVHFNLQELLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQ 658

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ NL+ NA+KFT   G V V+V     +     ++D+G GI +G +  +   F Q    
Sbjct: 659 VLTNLIGNAIKFTEQ-GHVTVSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGT 717

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                 G GLG  I++ ++   GG+   +S L +G      
Sbjct: 718 TTRRFGGTGLGTTISKQLVELMGGKIYAQSTLGQGSCFSFT 758


>gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 807

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 125/280 (44%), Gaps = 22/280 (7%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTPL 264
           + +    AELE           +    N                KS FLA MSHE+RTP+
Sbjct: 258 SRRKQAEAELEQRNEELTRANHQLAASNRRAAVLAAEAEAANRAKSDFLAHMSHEIRTPM 317

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N ++G + ++    +    +E  + Y G I  SG+ LL +IN+ILDL++IEAGR EL   
Sbjct: 318 NGVIGMTALLLAGDL----DEQQRHYAGVIKASGEALLRIINDILDLAKIEAGRLELVSR 373

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383
             SL  ++ E   +LQ  A  K + + +++   L   +  D+  +RQ++LNLL NA+KFT
Sbjct: 374 DFSLPALLAEIFTLLQPEAAAKGLALKEQVAADLPPRLRGDDVRLRQILLNLLGNAIKFT 433

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G    V +  +       S++D GPG+       +   F Q   A +    G GLGL 
Sbjct: 434 DHG---EVELSVSGQHEICFSVRDTGPGVPPELQQQIFAPFEQAGAADRRRPAGTGLGLA 490

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           I + +     G   + S    G     +LP         E
Sbjct: 491 ICRRLAQLMEGSLRVESTPGAGATFHCVLPFAAAKEAPVE 530


>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
 gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
          Length = 1129

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 147/357 (41%), Gaps = 6/357 (1%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
             W L+  +           + K   +++  +I  +       + F++   + +  + + 
Sbjct: 333 ATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEK 392

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + +  + +  +       +         + +S  + +     ++    ELE       + 
Sbjct: 393 VSAGDLDETMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQN---GELEDNLKTIQKQ 449

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +  +  N  K  FLA+ SHELRTPL+ ++G +E +     GP+     K  +  I  SG
Sbjct: 450 NEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPI-PANQKYQLDIIINSG 508

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q L  L++++LD  ++  G  ++ +SA+ L       + +       K I I  ++   L
Sbjct: 509 QRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSDL 568

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V +D + + QV+ NL+ NA+K+T+  G++ ++          + + D G GI    + 
Sbjct: 569 GLVSSDPQRLEQVMYNLVGNAIKYTSE-GKIVISASVIDDN-IRVQVVDTGQGIPAEYLE 626

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +     Q      +  QG GLGL I++ ++   GG   + S+   G      LP  
Sbjct: 627 HIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLA 683


>gi|325679716|ref|ZP_08159290.1| HDIG domain protein [Ruminococcus albus 8]
 gi|324108531|gb|EGC02773.1| HDIG domain protein [Ruminococcus albus 8]
          Length = 1203

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 179/430 (41%), Gaps = 36/430 (8%)

Query: 72  FPMW--SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129
              W      L +      L    +N   +       R+  +   I + + + ++ L   
Sbjct: 138 AGPWHHIYTMLLISYIVYGLVILFLNLLKEKNAKNRKRLRYIAASIVVQVTFYIIYLTGV 197

Query: 130 GTWTPEYLTIYKSATLLIALSI---SALSNFMLPYAVFL-----SFFPVV---------- 171
                  +  Y  +T+++ ++I     L    L +   +         V           
Sbjct: 198 TKGYNVTVLGYSISTVVMLIAIFKYDLLDTLELTHEYVVDKLSEGIIAVDTDGRVRYFNE 257

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK----DDLIAE 227
            A +    ++    +       A +      I   ++   V  L  + +       L+ +
Sbjct: 258 PAKALYPQLTETPAETVEVIEQAISEGQTIEIADRIYTPCVNELEFEGDSFGSLYMLVDD 317

Query: 228 LEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E  K      E R+ A+  N AKS FLASMSHE+RTP+NA+LG  E+I  E+    +  
Sbjct: 318 TEHYKYMEQLKEQRQLADRANKAKSAFLASMSHEIRTPINAVLGMDEMILRES----SER 373

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               Y  DI  +G+ LL+LIN+ILD S++E G+ EL  +   L   + + + M++ RA +
Sbjct: 374 QIIGYAEDIRTAGRTLLSLINDILDFSKVEQGKMELVPTQYELGSAINDLVNMVRPRADK 433

Query: 346 KNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400
           K ++   K+DP +  + + DE  ++Q  LNLL+NAVK+T   G V   VG+         
Sbjct: 434 KGLKFEVKVDPKMPHLLYGDEIRVKQCALNLLTNAVKYTEK-GSVRFEVGFEKSGEKSIK 492

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +I D G GI E ++  + + F +       + +G GLG+ I   ++   G +  + S
Sbjct: 493 LRFTIADTGAGIREEDMEKLFSPFSRIEEGKNRSIEGTGLGMSITVQLLELMGSKLDVDS 552

Query: 461 KLREGVEVIA 470
              +G     
Sbjct: 553 TYGKGSTFSF 562


>gi|288962304|ref|YP_003452599.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288914570|dbj|BAI76055.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 385

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 105/359 (29%), Positives = 175/359 (48%), Gaps = 4/359 (1%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            + +L    +  P+   +   AT L            L  A      P  V    +   +
Sbjct: 20  AMPSLSPDQSPLPDVSLLAGLATPLWLARAEDGVVLWLNGAACRLLDPDAVGGPLRFTPA 79

Query: 182 MHVLDISLA--GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             + + ++     +  +      +T  +  +  + L       D  A  E+A+  + E  
Sbjct: 80  GPMRETAVPRDIGIRGSGGPSVELTVRIDPAPGRGLLLVEGLADDTAHRELARLKAREA- 138

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
               + N  KS ++  +SHELRTPL A++GF+E++  + +GP ++  Y E    I  +G 
Sbjct: 139 -ELADTNRRKSDYINHLSHELRTPLTAVIGFAEILRDQLLGPPDSPRYGEAAAQIVAAGD 197

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           ++L LIN +LDL+RIEAGR +L E    L  IV   + M+ +RA+   + +  ++     
Sbjct: 198 YMLELINNLLDLARIEAGRLDLHEEECPLALIVDATLSMMAVRAERGGVAMSARLPADSP 257

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           ++WAD   +RQ++ NL++NA+KFTA GG V V+    +  G  +++ D+G G+A  +IP 
Sbjct: 258 TLWADPSLVRQMLTNLVANALKFTAEGGHVTVSAERDADGGLILAVADDGRGMAPEQIPR 317

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            LT+F Q       AE+G GLGLP+  +++A HGG   I S    G  +    P  RVL
Sbjct: 318 ALTAFTQLHDPATVAERGSGLGLPLTAALIALHGGGIAIDSAPGRGTTLRLRFPPERVL 376


>gi|257465491|ref|ZP_05629862.1| aerobic respiration control sensor protein [Actinobacillus minor
           202]
 gi|257451151|gb|EEV25194.1| aerobic respiration control sensor protein [Actinobacillus minor
           202]
          Length = 614

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 14/324 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFK 209
           SA+  F++     +     +  L    ++   +L   L G+++      FF  I   L K
Sbjct: 23  SAILGFVVLCIFAIIVQIFLDYLFLGRVLVHDILRSVLFGLISAPFVIYFFNVIVEKLEK 82

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S VK+     E   L  +  +         KR E+ +  K++ +A++SHELRTPLN I+G
Sbjct: 83  SRVKLEQSIYELGTLREQDFILN-------KRLEKNSQDKTKLMATISHELRTPLNGIIG 135

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S ++    + P      +EY+  I+ S   L ++ ++I+DL +I++ R EL    +  I
Sbjct: 136 LSRILLEGELAP----KQREYLKTINISAVSLGHIFSDIIDLEKIDSKRIELFNKPVEFI 191

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++ +      L A +K I+   +    L   +  D   + QVI NLLSNAVKFT   G 
Sbjct: 192 QLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWNLLSNAVKFTPEKGD 251

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + +   S       + D+G GIA+ E   +   F Q   +  +  QG G+GL +++ I
Sbjct: 252 ITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNKAQGSGIGLAVSKHI 311

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
               GG   + S+L +G      +
Sbjct: 312 AQLMGGDLTVESQLGQGSTFTLTI 335


>gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 701

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L   L F +Y   H   + V +L    ++  +  E     S         +  N  K  F
Sbjct: 276 LFGTLGFGSYHRTHFSPAEVNLLQVLCDQIAVALERAELVSSLQHQTGELKRANRVKDEF 335

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA +SHELRTPLN IL +S++++       + +     +  I R+ +    LI+++LD++
Sbjct: 336 LAVLSHELRTPLNPILAWSQMLQHRKF---SQDKLAIGLETIERNAKLQAQLIDDLLDMA 392

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           RI   +  L+   + L  ++   I  +Q  A  K++ I +     +  V  D   ++QVI
Sbjct: 393 RILRDKLVLNPVPLDLGRVIDAAIETVQPSAAAKSVVIEKHFSA-VGQVSGDAARLQQVI 451

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL+NAVKF   GGRV + +    G    I +KDNG GI    +P V  SF Q   +  
Sbjct: 452 WNLLANAVKFVPEGGRVQIGLAQI-GDRIQIQVKDNGKGIKPDFLPYVFESFRQADASTT 510

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489
               G+GLGL I + I+  HGG     S+   +G     +LP       I  D   + 
Sbjct: 511 RTFGGLGLGLAIVRQIVEMHGGTITADSEGDGQGATFTVLLPMLHAYTEIAVDTTPAP 568


>gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain (modular protein)
           [Bradyrhizobium sp. ORS278]
          Length = 1319

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 142/331 (42%), Gaps = 7/331 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L+ +      +        F V            H + + +     T    F     + F
Sbjct: 275 LAEALRLQSAVLVRDLARLFGVTFPSGGWRQPPRHAVVLPIPSSGETGQGGFVIAGLNPF 334

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDE-TRKRAEEE---NLAKSRFLASMSHELRTPL 264
           +   +  +             V+   + +  R+RAE     + AK+ F +++SHE RTPL
Sbjct: 335 RLYDESYARFLNLVAGQIAAAVSNGSAYQTERRRAEALAEVDRAKTTFFSNISHEFRTPL 394

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
             +L   E +     G +  E  +  +  IHR+   L+ L+N +LD SRIEAGR      
Sbjct: 395 TLMLSPLEDLLARDEGTIAAED-RSVLTLIHRNSLRLMKLVNTLLDFSRIEAGRMTARFE 453

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L  +  E +   +       +++  + +     V  D     +++LNL+SNA KFT 
Sbjct: 454 PVDLGGLTSELVSNFRSATDRAGLQLVIETEALPEPVHVDRDMWEKIVLNLVSNAFKFTF 513

Query: 385 IGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G + V++G +S R Q  + ++D G GI  GE+P +   F +   A   + +G G+GL 
Sbjct: 514 E-GEIAVSIGLSSDRRQAELRVRDTGTGIPPGELPHLFERFRRIEGARGRSFEGSGIGLA 572

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + Q ++  HGG+  + S+L  G      +P 
Sbjct: 573 LVQELVKLHGGEITVESELGRGSVFCVRIPL 603



 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%)

Query: 155  SNFMLPYAVFLSFF--PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                L   V   F+  P   +      +   ++D    G  A                N 
Sbjct: 850  IAAPLREVVGQPFWETPWFASTPGMPGVIRSLVDAVARGDEARRELHLDLPVGGWRWFNF 909

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL------AKSRFLASMSHELRTPLNA 266
            ++   + +   ++A +  A   ++  R++AEE         A  +    ++H+    L  
Sbjct: 910  QMRPVRDDTGQVVAIVPEAVEQTE--RRKAEEAFRQAQKMEAIGQLTGGVAHDFNNLLTV 967

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            I   ++++    + P   E  + Y+  I  +      L  ++L  +R    R  +  S  
Sbjct: 968  IRSSADLLRRRQLSP---ERMRRYVDAISDTADRAAKLTGQLLAFAR----RTPMERSVF 1020

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
             +   + +   MLQ       + I   +      V  D   +   ++NL++NA       
Sbjct: 1021 DVAGHIEQIEDMLQTVLGAPAV-IELDLRSRPLPVDVDVNQLETALVNLVANARDAMNGR 1079

Query: 387  GRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            G + +       +          I++ D G GIA  +I  +   F       K   +G G
Sbjct: 1080 GVLTIRGDRVQQQTAGGAQPFVSIAVSDTGCGIAADQIDRIFEPFF----TTKGVGRGTG 1135

Query: 440  LGLPIAQSIMANHGGQFLIRSKLREG 465
            LGL      +   GG+ L  S+L +G
Sbjct: 1136 LGLSQVYGFVHQSGGRVLAESELGKG 1161


>gi|255745823|ref|ZP_05419771.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262153458|ref|ZP_06028589.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255736898|gb|EET92295.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262030759|gb|EEY49392.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 570

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 129 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 188

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 189 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 243

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 244 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 303

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 304 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 361

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 362 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 421

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 422 TFTLYIPLQSRLKNIKPSTSSSQQI 446


>gi|254226277|ref|ZP_04919869.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
 gi|125621191|gb|EAZ49533.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
          Length = 572

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKPSTSSSQQI 448


>gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 775

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELPYLPDELGVIADRQRLVQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++     +S+ D G GIA   +  +   F +       + +G
Sbjct: 530 NAIKYNRPDGQVRIEVDRSAEH-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 587 TGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALPFVAVHAPT 630


>gi|197248253|ref|YP_002146648.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211956|gb|ACH49353.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 920

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1175

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 14/267 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     A+    + ++RAE  + AK+ FLA++SHE+RTPLN ILG   ++    +     
Sbjct: 636 ITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLTGRLESGE- 694

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I R G  LL+ +N+ILDL +IE G+ EL  +  +L+ ++ E +  ++  A 
Sbjct: 695 ---RRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVEGLAN 751

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGR- 399
           EK I +   I P++ + V  D + +RQ+++NL+ NAVKFT  GG   RV +         
Sbjct: 752 EKGIGLGLDIAPAVPALVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIETAPEHSGS 811

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                   ++++D G G+       +     Q    I     G GLGL I + ++    G
Sbjct: 812 GMIGERLRLAVRDTGIGVPADRRAAIFEKLEQADSTIARRFGGSGLGLAIVRHLLDAMQG 871

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481
              + S    G      +P  RV    
Sbjct: 872 SIRVDSVEGLGSVFTVTIPLLRVEEPA 898


>gi|251792984|ref|YP_003007710.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534377|gb|ACS97623.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 616

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 148/336 (44%), Gaps = 9/336 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           ++    +   + L    ++  +    I    +    + GM++      FFT +   L  S
Sbjct: 24  SILGVAVLAVLALCTQIILSVIFVGKIYWQDLFRSIVFGMISAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + +          I E  +A+        + E+ +  K+  + ++SHELRTPLN I+G 
Sbjct: 84  RLALSHSVENLQKEIDERLLAEKRLSAALDKVEKISRDKTTLMTTISHELRTPLNGIIGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S ++  E       E  + Y+  I+ S   L ++ ++I+DL +I+A R EL         
Sbjct: 144 SRILLEE----QPTERQRNYLKTINSSAVSLSHIFSDIIDLEKIDARRIELHSKETDFYA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +      L A+EK +E      P+L   +  D   + Q++ NL++NAVKFT   G V
Sbjct: 200 LLNDISNFALLMAEEKRLEFHLDCPPTLPNWLMLDGVRLNQILWNLITNAVKFTQQ-GSV 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++V  T+     I + D G GI E ++  +   + Q   + ++   G G+GL I+++I 
Sbjct: 259 TLSVEQTAENEFAIRVTDTGIGIDEADLEKIFELYYQV-NSNRNKSLGSGIGLSISKAIA 317

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              GG   + S++  G   +             ED+
Sbjct: 318 QLMGGDLTVTSEIGHGSTFLLTFKAEEAFRPSDEDS 353


>gi|153829718|ref|ZP_01982385.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148874797|gb|EDL72932.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 572

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKQSTSSSQQI 448


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 136/321 (42%), Gaps = 16/321 (4%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALS---FFTYITYHLFKSNVKILSCQAE--KDDLIAE 227
           +L+    +       +L   L    +    F     +  +          E     + A 
Sbjct: 269 SLALPRGVWPDPPTQALVVPLLQQGADPVGFLVAALNSHRRLDAPYRGFIELVAGHIAAG 328

Query: 228 LEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLNN 284
           +  A+S   + R+  E  E +LAK+ F +++SHE RTPL  ILG  +E++    +     
Sbjct: 329 IGSARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDV--- 385

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +   HR+G  L  L+N +LD SRI+AGR       + L  +  E   + +   +
Sbjct: 386 -RVREELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIE 444

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E      P    V+ D     +V+LNLLSNA+KFT   G V V V         ++
Sbjct: 445 RAGLEFTVDCPPLAEPVYVDRDMWEKVVLNLLSNALKFTRE-GAVTVRVTA-DDGVAVVT 502

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E E+P +   F +       + +G G+GL + + ++  HGG    +S+   
Sbjct: 503 VADTGVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGG 562

Query: 465 GVEVIAILPNTRVLNFIPEDN 485
           G      +P       +P D 
Sbjct: 563 GTTFTIQMPFG--AAHLPADE 581


>gi|239623925|ref|ZP_04666956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521956|gb|EEQ61822.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 657

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 158/444 (35%), Gaps = 7/444 (1%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92
           F R    L++         +    +    +  +F    I  + S + L ++  +      
Sbjct: 220 FFRRRERLYLTFSLICLTTVLRLGMESNALVQYFLPGGIGFVLSRVFLLLFTLHSLCICL 279

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            M     I      R+  LV  I       +L            +  Y  +  L A+   
Sbjct: 280 FMVQAFSIRLGRFLRVLYLVCFILPMAGICVLPYAAAVNGMFMVMIPYVISIFL-AVRTG 338

Query: 153 ALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +           S    +     T+ +    +    +   +   LS    ++    +++
Sbjct: 339 NIGRDPYRLLYLCSMVTYLFYGPLTKTVFEGDMFVPGIVPNMFLILSQCVMLSRSYAQAH 398

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            +     A  ++L+   +   +  +   ++ E    A    ++++SH+L+TPL  +  + 
Sbjct: 399 EEAERLNANLEELV---KQRTAQLNHANEQLEASQAALQEMISNISHDLKTPLTVLNNYL 455

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++  E +   + +   EY+G  +     L  LI+ + +++R+E G        +S   +
Sbjct: 456 ELLGDEMI-ASSEQERTEYLGIAYHKNLDLQRLIHNLFEVTRMEGGTAVYHPEWVSAGKL 514

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + E         ++K I         +  +  D+  +  V+ NL+ NA++ T  GG + +
Sbjct: 515 MVEADRKYGDLVRDKGITF-LARAEGMLELQLDKNKIWSVLDNLVYNALRHTPEGGSISL 573

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +         + + D G GIA   +P +   F + S      +   GLGL I ++    
Sbjct: 574 CISRDVDNRAALRVSDTGEGIAAAHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTAEA 633

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
            GG   + S L +G       P  
Sbjct: 634 MGGSVRVESTLGKGTVFTVTFPAR 657


>gi|241206010|ref|YP_002977106.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859900|gb|ACS57567.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1128

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 165/346 (47%), Gaps = 8/346 (2%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            + + L+++A+   +   A  ++      A       ++ ++    + +      F+   
Sbjct: 574 GIAVVLALTAIGAILAMIAHQVASASPETAEVVNR--TIFIVFFVFSVIAGVVCWFYVLA 631

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 +  +           IA  +   +     ++ AE  N AKSR++  +SHELRTP
Sbjct: 632 HDSRVVAEEESSRQNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTP 691

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNA+LG+++++E +   P      +  I  I RS +HL  LI+ +LD+S+IEAGR ++  
Sbjct: 692 LNAVLGYAQILERDETIPAP---RQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYS 748

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           + I++ D + + + M + +AQ K +    +  P+L   V  DEK +RQ+++NLLSNA+KF
Sbjct: 749 NEINIQDFLDQIVDMFRPQAQAKGLAFIHERAPALPQFVRTDEKRLRQILVNLLSNAIKF 808

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V   VG+   +    ++ D G GI E ++P +   F +G         G+GLGL
Sbjct: 809 TDE-GSVTFDVGYR-SQVATFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGL 866

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            I + +    GG+  + S   EG      L  + V+  +     E 
Sbjct: 867 TITRLLTNTLGGEISVSSVKEEGSTFRVRLMLSAVMRAVAAAPQEK 912


>gi|13937003|gb|AAK50005.1|AF361475_1 double histidine kinase DhkD [Dictyostelium discoideum]
          Length = 1546

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 9/270 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VI 274
               EK     E+E   +      ++ +E +  K++F A++SHELRTPL  I+G ++ ++
Sbjct: 179 RNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVGPTDKLL 238

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + E +        ++ +  + R+ + LL ++N +LD+SR+EAG+  L+ S ++L   V  
Sbjct: 239 KDENVDI----NVRKDLEIVARNARGLLKIVNNLLDISRLEAGKMNLNYSMVNLGQTVHL 294

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                ++ A+EK+++              D   M++VI NL+SNA KFT  GG V   + 
Sbjct: 295 IASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISNAFKFTPSGGAVKCILE 354

Query: 395 WTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                    G  I + D GPGI +     +   F Q   +      G GLGL I +  + 
Sbjct: 355 KFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTGLGLSIVKEFVT 414

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            HGG   I +    G +    LP T  ++ 
Sbjct: 415 LHGGTVTIHNISTGGAQFTLRLPLTPNMDE 444



 Score =  225 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 134/314 (42%), Gaps = 42/314 (13%)

Query: 202  YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            ++   L  +N  +     +  +   +L+      ++ R      N +K  F  ++SHELR
Sbjct: 694  FLQEELSSANTDLQELINQLTNKKRDLQTLVGELEKERNLLNNTNKSKDEFFMNLSHELR 753

Query: 262  TPLNAILGFSEVIE-----------LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            TPLN ILG+ +++                   ++ T +  +  I R       LIN++LD
Sbjct: 754  TPLNGILGWCQLLLYDIDSGGSSGGGSGSISGDDSTVRTGLETIERCASSQNQLINDLLD 813

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-------LSSVWA 363
            +S I   ++ L    + L  ++   I  + + AQ K I +   I          L ++  
Sbjct: 814  MSLIIGDKFSLILGDVDLPILIENAISSILVTAQSKKISVHSNIQGEGEEESSILRNIVG 873

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHV-----------------------TVGWTSGRG 400
            D+  ++QVI NLLSN++KFT   GR+H+                       T+     R 
Sbjct: 874  DKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVVNQIPSREVLGFCSNPMFNTINRHGDRW 933

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +I DNG GI +  +P+V   F Q   +   +  G+G+GL I Q+I+  H G     S
Sbjct: 934  ILFTITDNGKGIPKQFLPSVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVYANS 993

Query: 461  K-LREGVEVIAILP 473
            +   +G +   +LP
Sbjct: 994  EGENKGSQFTVVLP 1007


>gi|66812156|ref|XP_640257.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855086|sp|Q54SP4|DHKD_DICDI RecName: Full=Hybrid signal transduction histidine kinase D
 gi|60468257|gb|EAL66266.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1546

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 9/270 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VI 274
               EK     E+E   +      ++ +E +  K++F A++SHELRTPL  I+G ++ ++
Sbjct: 179 RNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVGPTDKLL 238

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + E +        ++ +  + R+ + LL ++N +LD+SR+EAG+  L+ S ++L   V  
Sbjct: 239 KDENVDI----NVRKDLEIVARNARGLLKIVNNLLDISRLEAGKMNLNYSMVNLGQTVHL 294

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                ++ A+EK+++              D   M++VI NL+SNA KFT  GG V   + 
Sbjct: 295 IASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISNAFKFTPSGGAVKCILE 354

Query: 395 WTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                    G  I + D GPGI +     +   F Q   +      G GLGL I +  + 
Sbjct: 355 KFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTGLGLSIVKEFVT 414

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            HGG   I +    G +    LP T  ++ 
Sbjct: 415 LHGGTVTIHNISTGGAQFTLRLPLTPNMDE 444



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 134/314 (42%), Gaps = 42/314 (13%)

Query: 202  YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            ++   L  +N  +     +  +   +L+      ++ R      N +K  F  ++SHELR
Sbjct: 694  FLQEELSSANTDLQELINQLTNKKRDLQTLVGELEKERNLLNNTNKSKDEFFMNLSHELR 753

Query: 262  TPLNAILGFSEVIE-----------LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            TPLN ILG+ +++                   ++ T +  +  I R       LIN++LD
Sbjct: 754  TPLNGILGWCQLLLYDIDSGGSSGGGSGSISGDDSTVRTGLETIERCASSQNQLINDLLD 813

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-------LSSVWA 363
            +S I   ++ L    + L  ++   I  + + AQ K I +   I          L ++  
Sbjct: 814  MSLIIGDKFSLILGDVDLPILIENAISSILVTAQSKKISVHSNIQGEGEEESSILRNIVG 873

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHV-----------------------TVGWTSGRG 400
            D+  ++QVI NLLSN++KFT   GR+H+                       T+     R 
Sbjct: 874  DKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVVNQIPSREVLGFCSNPMFNTINRHGDRW 933

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +I DNG GI +  +P+V   F Q   +   +  G+G+GL I Q+I+  H G     S
Sbjct: 934  ILFTITDNGKGIPKQFLPSVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVYANS 993

Query: 461  K-LREGVEVIAILP 473
            +   +G +   +LP
Sbjct: 994  EGENKGSQFTVVLP 1007


>gi|304404379|ref|ZP_07386040.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346186|gb|EFM12019.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 699

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 178/490 (36%), Gaps = 50/490 (10%)

Query: 34  DREIITLHV-ESLFRVSPILPLFVLLVANIGTWFTQNPIF-----PMWSLIT----LAVY 83
               + L+      R +    L  LLVA       +  +F       W +      +A  
Sbjct: 212 GTYHLGLYAFRRRERFTLPFGLLCLLVALRMGVTGETMLFQRFPELPWEVGMRIEYIAFA 271

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
              ++    +       G    +R+   +G         L T+V         L I    
Sbjct: 272 LTGVAGYAYIFRMFPMDGSKRFYRLAYGIGIGLSIATLGLPTIVFTRWLVVYQLFIITVC 331

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-- 201
                + + A         + L+   + +A     I+      +S+  +      F    
Sbjct: 332 AYCFYVVVKARLRKREGSTLVLTGLSIFIATVINDILFYGEQLVSVQLVPIGVTCFILMQ 391

Query: 202 ------YITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLA 248
                   T+ L K  +     +     L         EL+ + +  +++    E +  +
Sbjct: 392 SLILSNRFTFALRKVELVSEELRELNMHLEKRVVERTDELQRSYASLEQSTGELERQEKS 451

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +   L+++SH+LRTP+  + G+ E +    +   + E  + YI  +      L  LI+++
Sbjct: 452 RRHLLSNISHDLRTPITLVQGYLEAMRDGVVD--DKEQQRRYIQMMLGKLSRLNGLIDDL 509

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-------------- 354
            +LS++EAG+       + L D +    +  ++   +    +  +               
Sbjct: 510 FELSKLEAGQVRFHYETVGLKDWLESLYLSFEMDVAKDGGILECRYNGELLAGDESMDEV 569

Query: 355 -----DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIK 406
                 P   +V  D   M QVI NL+ NA+++   G    R+++   + SG    I ++
Sbjct: 570 VASEASPDHRAVRIDLARMEQVISNLIYNALRYLPDGEPDQRIYIDA-YESGEVAIIEVR 628

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   ++P +   F +   +  S+E G GLGL I + I+  HGG    RS+  +G 
Sbjct: 629 DTGSGIDPEDLPHIFDRFYKKDKSRNSSEGGSGLGLAIVKEIVQQHGGGIEARSEKNKGA 688

Query: 467 EVIAILPNTR 476
             I  LP  R
Sbjct: 689 LFIIHLPIAR 698


>gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 480

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 12/240 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL ++  + E +E   +   + ET   +I         ++
Sbjct: 222 DKAERERRLFVSNVSHELRTPLTSVKAYLEALEDGAI--EDKETASSFINVSLTETNRMI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDI-------VRECIIMLQLRAQEKNIEIFQKID 355
            +I+++L LSR++  R  L++  I+LI         + + +          N  + +K  
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D   + QVI N++ NA+K++  GG + ++V         ISI D G GI + 
Sbjct: 340 EQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESD-VLISISDQGMGIPKS 398

Query: 416 EIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  +   F +    +  S   G GLGL I   I+  HGG     S+   +G      LP
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|317486729|ref|ZP_07945546.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922112|gb|EFV43381.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 887

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 128/247 (51%), Gaps = 8/247 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +  + A   N AKS FL+ MSHE+RTP+NAI+G + +         +    ++ +
Sbjct: 351 RQALSDALENARNANTAKSNFLSHMSHEIRTPMNAIIGMTVIALTRL---DDRSRMEDCL 407

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S +HLL LIN++LD+S+IE G+  ++    +    ++  I ++Q +A E+ ++  
Sbjct: 408 TKIALSSRHLLGLINDVLDMSKIEGGKLTIAHEPFNFKISLQGVINLIQPQALERGLDFE 467

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
             +       +  D   + Q+++N+LSNA+KFT +GG + + V     +         I+
Sbjct: 468 VSLSGVDEEELLGDALRLNQILINILSNALKFTPVGGSIRLEVHQLHKKNNNVQFRFVIR 527

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G+++  I  + T F Q + +  S   G GLG+ I +++++  GG   ++S+   G 
Sbjct: 528 DTGIGMSQEFIKRLYTPFEQATSSTASKFGGTGLGMAITKNLVSLLGGTIFVKSEEGRGT 587

Query: 467 EVIAILP 473
           E    LP
Sbjct: 588 EFTVELP 594


>gi|294645464|ref|ZP_06723165.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292639165|gb|EFF57482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 911

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 323 FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 372

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 373 ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 420

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K  +  ++++G+ LL+++N++LD  + EAG   +  + + + +++++   + +  AQ++
Sbjct: 421 QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKR 478

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 479 AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 537

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 538 DSGIGMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 593

Query: 467 EVIAILPN 474
           E    LP 
Sbjct: 594 EFKVTLPA 601


>gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 475

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 114/257 (44%), Gaps = 12/257 (4%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L   ++       E R        ++  F++ +SH+LRTP+  I G+S V++    
Sbjct: 226 EISHLGESIQSMTKQLKEYRD-------SRRHFISHISHDLRTPITYIKGYSAVMKD--A 276

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             +  E  K  +  I+     +  L++++  L+++E G+ +L    + +   +       
Sbjct: 277 KTVEKEDLKRNLNVIYNEATRMEQLVSDLFLLTKLEEGKIKLEMELVPIGVWLENLYESR 336

Query: 340 QLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            L   +K I+   +ID       +  D   M Q ++NL+ NA++ T   G + + +    
Sbjct: 337 ALMFDQKRIKHRIEIDKHCQELMIMMDSYRMEQALINLIENAIRHTPKDGEIEL-ILRKD 395

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + +KD G GI++ ++P +   F +   +    + G GLGL I + ++  H G+  
Sbjct: 396 DNEVTVCVKDTGCGISKHDLPHIWERFYKADASRNRNDSGTGLGLAIVKEVVEAHQGKVD 455

Query: 458 IRSKLREGVEVIAILPN 474
           + SKL +G      LP 
Sbjct: 456 VYSKLGKGTTFSIHLPL 472


>gi|262408173|ref|ZP_06084720.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294806731|ref|ZP_06765558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|262353725|gb|EEZ02818.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294446013|gb|EFG14653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1365

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 777  FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 826

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 827  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 874

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + + + +++++   + +  AQ++
Sbjct: 875  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKR 932

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 933  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 991

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 992  DSGIGMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 1047

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1048 EFKVTLPA 1055


>gi|237714341|ref|ZP_04544822.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445505|gb|EEO51296.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1343

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 755  FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 804

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 805  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 852

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + + + +++++   + +  AQ++
Sbjct: 853  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKR 910

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 911  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 969

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 970  DSGIGMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 1025

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1026 EFKVTLPA 1033


>gi|228937888|ref|ZP_04100516.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970769|ref|ZP_04131409.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977344|ref|ZP_04137739.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228782321|gb|EEM30504.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228788894|gb|EEM36833.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821794|gb|EEM67794.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938367|gb|AEA14263.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 463

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARTRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|325109506|ref|YP_004270574.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969774|gb|ADY60552.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 566

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           PV   L           +  L      A+     ++ H+    + I+S  +E+     E 
Sbjct: 113 PVTAYLKQLENAGAWRGNFPLMAADGHAIYLEWNMSSHIPGQWLTIVSDVSEQIRYQEER 172

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E+        R  +E  N  K  FLA++SHELRTPL+ I+G+S ++    MG L++E+ +
Sbjct: 173 ELLLESERTARSESERANQLKDEFLATLSHELRTPLSNIVGWSRLL---NMGGLDDESIR 229

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E +  I  +G  L  +I ++LD++RI +G+  L   +++ ++ +   I  ++  A  K +
Sbjct: 230 EGLDTIESNGNILSQMITDLLDVARIASGKIRLDTVSLNPVETLEAAIRAVKPSADAKQL 289

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +D +   +  D   ++QV  NLL+NA+KFT   G++ V V    G    ISI D 
Sbjct: 290 GVVTTVDRNAGLIEGDASRLQQVFWNLLTNAIKFTPAEGQIDV-VMQKVGSTIQISIADT 348

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467
           G G+    +  +   F Q          G+GLGL I + ++  HGG     S  L +G +
Sbjct: 349 GKGMTPETLNIIFERFRQADGTTTREHGGLGLGLAITKQLVDLHGGTISAESAGLGQGAK 408

Query: 468 VIAILPNTRVLNFIPEDNHES 488
            I   P   V +  P    E 
Sbjct: 409 FILSFPIVGVESETPPLLTEK 429


>gi|254286108|ref|ZP_04961068.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150423777|gb|EDN15718.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 572

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S Q 
Sbjct: 424 TFTLYIPLQSRLKNIKPSTSSSQQI 448


>gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 935

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 162/326 (49%), Gaps = 9/326 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS-N 211
                     VF +   +        I        ++  + A   ++   I + L  + N
Sbjct: 445 TSIAPGFEALVFKASRGIEDIYQLTYIRKDGSRFPAVVSVTALRDAYNVIIGFLLIGTDN 504

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              +  + E++ L A L+   +  + ++  AE+ N AKS FL+SMSHELRTPLNAILGF+
Sbjct: 505 TARIQVEEEREQLTATLQDKNAELESSKAIAEKANRAKSEFLSSMSHELRTPLNAILGFA 564

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           +++E       + +  +  I  I ++G +LL+LINEILDL+ IE+GR  LS  ++ LID+
Sbjct: 565 QLLEKGQPTLTHTQEVR--IQQIIKAGWYLLSLINEILDLAVIESGRLSLSRESVLLIDV 622

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + E   M++ +A ++ I +            AD   ++QV++NLL+NA+K+    G + V
Sbjct: 623 INESKAMVEPQALKREIRLNFLPFSHALHANADHTRLKQVLINLLTNAIKYNRQHGTITV 682

Query: 392 TVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
                           I+IKDNG G++E  I  +   F +       +++G G+GL + +
Sbjct: 683 ECTEVKAIDKLQDRIRITIKDNGYGLSEANISQLFQPFNRLGQ-ESGSQEGTGIGLVVTK 741

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            ++   GG   ++S++  G E    L
Sbjct: 742 QLVELMGGTIGVKSQVGVGSEFWIEL 767


>gi|209965184|ref|YP_002298099.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209958650|gb|ACI99286.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 420

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 152/300 (50%), Gaps = 5/300 (1%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLS 235
                 D        + ++   ++   L   NV + S   E    ++E       A+   
Sbjct: 108 FIGRPFDPHELLARLSNVAQAQFLQRQLRHQNVMLESMVKESTQRLSEAMEVLRHAERQL 167

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E  + + EEN  KS FLA+ +HELRTPLNAILGF++++  E  GPL N  Y EY  DIH
Sbjct: 168 AEQLEHSREENRRKSEFLANATHELRTPLNAILGFADLLVAEAYGPLGNPHYAEYAHDIH 227

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            + +HLL L+   +DL++ E+G+ E+    I +   V++ I +L+  A+   + +   + 
Sbjct: 228 TAAEHLLALVEGTMDLAKAESGQDEIELREIDIGRTVQDSIRLLRQLAEIGGVSLTVSVP 287

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAE 414
            +   + +D + +RQ++LNL SNA+KFT  GG V V V   S  G  I  I+D G GIA 
Sbjct: 288 ETPLRLRSDPEKIRQIVLNLASNAIKFTPKGGCVTVDVSADSDGGACILVIRDTGIGIAP 347

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ T L  FGQ     +   +G GLGLP+ +  +   GG   I S+   G  V   LP 
Sbjct: 348 QDLATALRPFGQVRSPDRPHPKGTGLGLPLTRRFVEMLGGSMAIDSRPGHGTVVTVRLPA 407


>gi|126662135|ref|ZP_01733134.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
 gi|126625514|gb|EAZ96203.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
          Length = 1562

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + ++ +   ++ ++RA   + AK  FL++MSHE+RTPLNAI+GF      E      +
Sbjct: 1050 ITDQKLLEIELEKEKQRAINASKAKEVFLSTMSHEIRTPLNAIIGFL----RELSKHTTS 1105

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +  K Y+ +   +  HLL++IN++LD+S+IE+G  EL  +   L   V + + +L+++A+
Sbjct: 1106 QEQKIYLENSTIASSHLLSIINDVLDISKIESGEMELESNNFDLKHSVEKVVTILEVKAK 1165

Query: 345  EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
            EK +E+    +  +S++   D   + Q++ NL+ N++KFT   G ++V           +
Sbjct: 1166 EKGLELKSNFNSGISNLLLGDSFRIEQILYNLIGNSLKFTIE-GSIYVQCDLIQDFEEEQ 1224

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ISI D G GI E  + T+ T F Q          G GLG+ I + ++    G   I 
Sbjct: 1225 ELLISISDTGIGIEESYLETIFTKFSQEEKDTSRKFGGTGLGMAITKELVDLMRGNITIE 1284

Query: 460  SKLREGVEVIAIL 472
            SK   G ++   L
Sbjct: 1285 SKKNTGTKITVFL 1297


>gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 422

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+ A+ L    R+ +   +  KS F+A+MSHE+RTPLNAI+GFS ++    +   + 
Sbjct: 169 VTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASSE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +   +     D++RE   + + +  
Sbjct: 225 EERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++E+  +       ++++ + + QV+ NLL NA+KFT   G + +             
Sbjct: 285 NSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFT-ESGEIRLGCSLKGTEEVCFV 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG   + S++  
Sbjct: 344 VSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSEINR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 655

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 11/258 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +    +      ++ AE  N AKS FLA+MSHE+RTPLN IL   +++   ++    +
Sbjct: 256 LTDRRRMEHDLRAAKEGAEAANQAKSEFLANMSHEVRTPLNGILSTLQLLGTTSL----D 311

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +    +S   L  L+++ILDL++IEAG+    ES      + R  + +    A 
Sbjct: 312 AEQQECLFAAIKSSHRLTQLLSDILDLTKIEAGKLPCRESRFEFGQLRRAVLELFAKAAS 371

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K++ +   I   +   +  DE  +RQ++ NL+ NAVKFT   G+V V        G   
Sbjct: 372 DKDVGLVFTISDDMPRWLVGDEVRLRQILFNLVGNAVKFTLQ-GQVTVEAKALPSAGGDR 430

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI + ++  V   F Q   +     QG GLGL I + ++   GG+  +
Sbjct: 431 LHVLFVVSDTGIGIPDDQLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLVRMLGGELAV 490

Query: 459 RSKLREGVEVIAILPNTR 476
                 G  +   +P  R
Sbjct: 491 DGTEGGGTTMYCSIPLKR 508


>gi|209522685|ref|ZP_03271243.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496734|gb|EDZ97031.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1263

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 18/289 (6%)

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +     +   +  +  +    + EK   +          +E R+ A+  N AKS FLA+M
Sbjct: 749  IDLLESVAAKMGIALAQANLLEREKQQRLKLATQ-NIALEEARRAADAANRAKSTFLANM 807

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLNAILGFS+++    +    ++     +  I+RSG+HLL LIN+ILDLS+IEA
Sbjct: 808  SHELRTPLNAILGFSQLMSDNPIFAEGSQE----LAIINRSGEHLLELINDILDLSKIEA 863

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+  L  +   L  ++     M +L+A  K+I +       L   +  DEK +RQV++NL
Sbjct: 864  GKITLEMNHFDLHRLLETLEEMFKLKAAHKDIVLNINRPLDLPRYLLGDEKKLRQVLINL 923

Query: 376  LSNAVKFTAIGGRVHVTVG--------WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFG 425
            L+NA+KFT   G V +            T          ++D GPGI+  EI  +  +F 
Sbjct: 924  LANAIKFTTA-GEVTLYTKTLPTPKEAHTDSNTVLMQFIVEDTGPGISPQEIDALFDAFV 982

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q     K +++G GLGLPI++  +   GG   + S +  G + I  +P 
Sbjct: 983  QTETG-KYSQEGTGLGLPISRKFVQLMGGDITVDSTMGVGSKFIFEIPL 1030


>gi|206969941|ref|ZP_03230895.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206735629|gb|EDZ52797.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 484

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVRLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           + +G  +   L
Sbjct: 466 IGKGTSIFFSL 476


>gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
 gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
          Length = 1565

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K+ F++ +SHELRTPL ++ G   +++   +     ET +  +  + R+   L+ 
Sbjct: 1318 ELDRLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREE-PETVEHMLQIVLRNCDRLIR 1376

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+N+IL+L R+E+G+ +L + A  +  ++ + +  +   A E +I I        + VWA
Sbjct: 1377 LVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTSIS--AHVWA 1434

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEG 415
                + Q++ NLLSNA+KF   G  V +T                   S+KD G GI   
Sbjct: 1435 SYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRGIPTN 1494

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ T+   F Q   +    + G GLGL I QSI+  H G+  + S L EG      LP 
Sbjct: 1495 KLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFTLPL 1553


>gi|110639274|ref|YP_679483.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
 gi|110281955|gb|ABG60141.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
          Length = 1324

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 134/252 (53%), Gaps = 8/252 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I+E +  +    + ++ AEE   AK  FLA+MSHE+RTP+N ILG +E+I   ++     
Sbjct: 795  ISENKKIEQELIKAKQIAEESTKAKEMFLANMSHEIRTPMNGILGMAELISRTSLDV--- 851

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             T K+++  I  S  +LL +IN+ILD+++IE+G+  + +    + ++++  I  L  +A+
Sbjct: 852  -TQKKHVQLIKNSADNLLIIINDILDIAKIESGKLTIEQIPFDICEVIKSAIQTLTYKAE 910

Query: 345  EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            EK I++           V  D   + Q +LNL++NA+KFT  G   +   +  +S     
Sbjct: 911  EKGIDLIIHPIKLDHRVVIGDPFRLTQALLNLINNAIKFTENGSVEISGRIPHSSSTDIT 970

Query: 403  IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
                +KD G GI + ++ ++   F Q S        G GLGL I+++++   GG   + S
Sbjct: 971  FEFTVKDTGIGIPQEKLDSIFEGFTQASPDTSRKYGGTGLGLTISKNLIQMQGGNIWVES 1030

Query: 461  KLREGVEVIAIL 472
             + +G + I  +
Sbjct: 1031 VVGKGSKFIFSI 1042


>gi|117618284|ref|YP_856115.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559691|gb|ABK36639.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 657

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 139/323 (43%), Gaps = 19/323 (5%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                 +    +   A+     +        +    C       I     A+ + ++ R+
Sbjct: 216 WGKYRRLIGLHLPVRAVRAQVSLAKGPRWMEINAEPCFDAAGAFIGYRGTARDVGNQIRR 275

Query: 241 RAE---------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             E           N AKS+FLA M+HE+R+P+NA+LG  ++++   +        +  +
Sbjct: 276 EQELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHAQL----EPQQQTLL 331

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G    + + L  +I+++LD S+IE+   E     +    + +  I  L  +A  K I++ 
Sbjct: 332 GHATHAARLLQTIIDDVLDFSKIESHTLEFHCETLQPAQLCQSLIEPLLAQAGSKGIDLR 391

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            ++D ++   +  D   + QVI NLL NAVKFT+  G V + + W   +   +S+ D+G 
Sbjct: 392 WRVDDAVPAQLQGDPVRLSQVISNLLGNAVKFTSQ-GSVLLQLSW-HEQQLRVSVTDSGI 449

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+  +   +   F Q   +      G GLGL I++ ++   GG   +RS   EG     
Sbjct: 450 GISAEDQALLFEPFSQVDSSATRRFSGTGLGLAISKRLVELMGGSIQLRSAPGEGSCFWF 509

Query: 471 ILP---NTRVLNFIPEDNHESTQ 490
            LP        +  PE + +  Q
Sbjct: 510 DLPGMALPCECSSRPEPDQQPIQ 532


>gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 834

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 197/447 (44%), Gaps = 31/447 (6%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
             F L      TW   +    +     +     N  +  K++          ++ I L+V
Sbjct: 159 ISFGLYSEIAYTWLLSDAFALLIVTPFIIACNHNFKVFIKLLQEQWLEAASIIFFILLIV 218

Query: 113 GQIAIG-------LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
             IA G       + + L +           LTI  SA L++ L++      +    + L
Sbjct: 219 KIIANGYPIEYLLIPFLLWSAFRFTEVGSSLLTIVVSALLVLILALDQEKAAIKDQLLLL 278

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                 ++++T  + ++   +      L T           L +   +    +A+++ ++
Sbjct: 279 QSILACISMTTLVLNAVLSENERSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKIL 338

Query: 226 AELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            E       +      ++ AE E  AKS F+A+MSHELR+PLNAI+GFS+++      P+
Sbjct: 339 IEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPM 398

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E  G I RSG++LLNLIN ILD S+IEAG+  L+     L  ++ +   ML L+
Sbjct: 399 ---EQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLK 455

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A  + IE+    D  L   V+ DE  +RQ++LNLLSNA+KFT  G  V  +    + + +
Sbjct: 456 AANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQE 515

Query: 402 YI----------------SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            I                +IKD G GI+E E+  +  +F Q       A++G GLGL I 
Sbjct: 516 VINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRN-AQEGTGLGLAIT 574

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +   GG   + S + +G      +
Sbjct: 575 RQFIKLMGGDINVSSVVDQGTTFSFSI 601


>gi|325262196|ref|ZP_08128934.1| putative hybrid sensory kinase [Clostridium sp. D5]
 gi|324033650|gb|EGB94927.1| putative hybrid sensory kinase [Clostridium sp. D5]
          Length = 860

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 20/274 (7%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +++     +   +ETR      N+AK+RFL+SMSH++RTP+NAI+G +E+         +
Sbjct: 324 IMSINRQLRKSVEETRN----ANMAKTRFLSSMSHDIRTPMNAIIGMTEIAVKHI---DD 376

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                + +  I  SG HLL LIN++LD+S++E+GR  L     SL +     + +++ + 
Sbjct: 377 RRRVLDCLDKITLSGSHLLTLINDVLDISQVESGRMSLHPVVFSLSECTTNLVNIVKPQI 436

Query: 344 QEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRG 400
           +EK +E      +     ++ADE  M Q+ +NLL+NAVK+T  GG++ + +G T      
Sbjct: 437 KEKGLEFDVHLHNLQYEYLYADELRMNQIFINLLTNAVKYTNPGGKIVLDLGETFLPEDS 496

Query: 401 QYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           + I   +++D G G+++  +  +  +F +         QG GLGL I + ++    G   
Sbjct: 497 RVILTYTVQDTGMGMSKEFMKDMYQAFNRAVDPRIDKVQGSGLGLAITRQMVDLMNGTIE 556

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             S+   G +    L        +P     +  +
Sbjct: 557 CESEPGRGTKFTVTL-------ALPVAEKNTDDF 583


>gi|228923427|ref|ZP_04086713.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836212|gb|EEM81567.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 484

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADWEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIEVDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|198243220|ref|YP_002215737.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|207857102|ref|YP_002243753.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197937736|gb|ACH75069.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|206708905|emb|CAR33235.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 920

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622]
 gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 981

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/274 (32%), Positives = 143/274 (52%), Gaps = 4/274 (1%)

Query: 201 TYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  +Y      ++I+  Q E  D L  EL VAK   +E  + AE     KS FLA+ SHE
Sbjct: 302 SLASYQQRALQMEIIRQQNEDLDRLAQELAVAKRNEEERAREAEAAARLKSEFLANFSHE 361

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN I+G+ +++  E  G       +  +  +  + + LL LIN+ILDLS+IE+GR 
Sbjct: 362 IRTPLNGIIGYCDLLMREE-GQRLTAHGRRDLNVVKTNAKTLLALINDILDLSKIESGRV 420

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           E+    + + ++  EC+  ++   + K++ +   IDPS   + +D   +RQ++LNLLSNA
Sbjct: 421 EVVTEQVDVQELAEECLATVKEYLKGKDVALTTNIDPSARMLRSDALKLRQIMLNLLSNA 480

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
            KFT   G V +++   +G    ++++D G GI   E+P +   F Q   +      G G
Sbjct: 481 AKFTDA-GEVALSLVP-AGSEVIMTVEDTGVGIPSDELPFIFEKFRQVDGSTTRKVGGTG 538

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL I + +    GG   + S L  G      LP
Sbjct: 539 LGLAIVRELSRVLGGNVTVTSTLGRGTTFTVRLP 572


>gi|94314643|ref|YP_587852.1| two-component regulatory system sensory histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93358495|gb|ABF12583.1| sensor protein, histidine kinase-response regulator [Cupriavidus
           metallidurans CH34]
          Length = 784

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E++   +L     + AE    AKSRFLA+MSHE+RTPL  ++   +++    +     
Sbjct: 287 VTEMQRYNTLLATASREAEAATEAKSRFLATMSHEIRTPLATVIASLDLLRESELSTH-- 344

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +     S + LL ++ +ILD SRIEAG  +L ++ I L  I+ + + +   + +
Sbjct: 345 --QREELDLADHSAKLLLEILGDILDFSRIEAGEMKLEQAPIDLRLIIEDVLRIQARQIE 402

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
           +K + +   ++  L+ ++  D   +RQ++LNL+ NA KFT   G + V     +     +
Sbjct: 403 KKGVILDFYVEAGLAATLLGDAVRLRQIVLNLVGNATKFTLQ-GSIVVRALLIADHPETQ 461

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GI   +   +  +F Q  ++      G GLGL I   ++   GG  ++ 
Sbjct: 462 TIQLEVSDTGIGIPAEKQAALFKAFSQADVSTTRRFGGSGLGLSICSRLVQAMGGAVVLT 521

Query: 460 SKLREGVEVIAIL 472
           S    G      L
Sbjct: 522 STPGVGSTFRVEL 534


>gi|329314169|gb|AEB88582.1| Sensor protein srrB [Staphylococcus aureus subsp. aureus T0131]
          Length = 564

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 337 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 395 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 454 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 512

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 513 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 470

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 20/399 (5%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           N  ++      W   L       G   T+ +           LT+           +   
Sbjct: 84  NRRLQFARPRTWTQPLDPAARQSGR--TMFSAAFSNEQHMRVLTVPLVTRRGAVGILQVG 141

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +  L  AV  +   ++  L+  +I+   +L           L   T +   + +++   
Sbjct: 142 LSLALVDAVRSTLASILFFLALISIVLAALLASVAVQRTLQPLEMVTEVATTITRADDLS 201

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                  +       + ++  ++T  R E     + RF+A +SHELRTPL  I G   ++
Sbjct: 202 RRIPTPPNSDDEVGRLIQAF-NQTLSRLESLFTTQRRFIADVSHELRTPLTVIKGEVSLM 260

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                G        E +  I      L  L+  +L L++ E+GR  L    + +  I+ E
Sbjct: 261 RKMKCGDE------ESLQSIESEVDRLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLE 314

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               ++  A EK       ++    S+  D   ++QV+LN++ NAV++T  GG V + + 
Sbjct: 315 VFQQMRTLAGEKVHLEIVTLEQ--VSLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLT 372

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ---GVGLGLPIAQSIMAN 451
            T      I++ D GPGI E ++P +   F +G  +   ++    G GLGL IA  I+  
Sbjct: 373 QT-DGYARITVSDTGPGIPEEDLPYIFERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQV 431

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           HGG+  + S + +G   I  LP       +PE + ++ +
Sbjct: 432 HGGKIDVTSVVGKGTTFIIHLPLK-----LPEKSGDAPE 465


>gi|283770562|ref|ZP_06343454.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283460709|gb|EFC07799.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 582

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 413 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 471

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 472 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 530

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 531 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|253730990|ref|ZP_04865155.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725273|gb|EES94002.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 549

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 322 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 379

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 380 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 438

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 439 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 497

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 498 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 547


>gi|161509720|ref|YP_001575379.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|160368529|gb|ABX29500.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269940983|emb|CBI49367.1| sensor kinase SrrB [Staphylococcus aureus subsp. aureus TW20]
 gi|302751323|gb|ADL65500.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|323439507|gb|EGA97228.1| respiratory response protein B [Staphylococcus aureus O11]
 gi|323441525|gb|EGA99176.1| respiratory response protein B [Staphylococcus aureus O46]
          Length = 564

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 337 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 395 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 454 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 512

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 513 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|167033184|ref|YP_001668415.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859672|gb|ABY98079.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 750

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 12/345 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS----TQAIMSMHVLDISLAGMLAT 195
                L +ALS            V   F   + A       +           +  +   
Sbjct: 155 VFLCGLAVALSGLFYRLVTRHLQVMAEFARRIGAGQWQEPLRLGRRRSARPDEIDTVANA 214

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  I   + +     L  Q ++D+L A +E   +     +  AE  NLAKSRFLA+
Sbjct: 215 LDDMRRAILSDIERRERDRLELQGKRDELQAMVERRTASLARAKDEAEAANLAKSRFLAT 274

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLN ILG +E++    +   +    ++ +  ++++G+ LL ++NE+L  +R+E
Sbjct: 275 MSHELRTPLNGILGMAELLRGGRLEAAD----RQRVEALYKAGEGLLAILNEVLYFARLE 330

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374
            G         SL  + +E + +L+  A E    +   +D  L++     E+ +RQV+ N
Sbjct: 331 EGESRAELVGFSLRQLCQEVLALLEPMAMENADTLQLHVDEQLAAHQHGAEQYLRQVLSN 390

Query: 375 LLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           LL+NA+KFT  G     V V       +   +S+ DNG GI       +   F Q S  +
Sbjct: 391 LLANAIKFTEHGQVQLTVQVLASNERSQRLRLSVSDNGIGIEPAVQAKIFDRFVQASETV 450

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
                G GLGL I + ++   GG   + S   +G      L   R
Sbjct: 451 ARRYGGTGLGLAICKHLVEKLGGSIGLDSVQGQGSCFWFELDMAR 495


>gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 618

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 3/243 (1%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +  +    E    AE+ NLAKS FL+SMSHELRTPL+AILGF+++IE  T  P    + 
Sbjct: 212 RKQVEVALKEAMAVAEKANLAKSDFLSSMSHELRTPLSAILGFAQLIESGT--PQPTPSQ 269

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K  +  I ++G +LL LINEILDL+ IE+GR  LS   +SL +++ EC  +++ +A ++ 
Sbjct: 270 KRSVDQILQAGWYLLELINEILDLALIESGRLSLSLEPVSLAEVMLECETLVESQAAKRG 329

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +          V AD   ++QV++NLLSNA+K+   GG V +     S +   I ++D
Sbjct: 330 IRVTFPQFSLPCFVKADRTRLKQVLINLLSNAIKYNTSGGTVVLKCVNVSPQRIRICVED 389

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G+   +I  +   F +      + EQG G+GL + + ++   GG   + S + +G  
Sbjct: 390 TGEGLNPAKIAQLFQPFNRLGQEANT-EQGTGIGLVMTKRLIELMGGAIGVESIVGQGSV 448

Query: 468 VIA 470
              
Sbjct: 449 FWI 451


>gi|75416541|sp|Q9L523|SRRB_STAAU RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|7839534|gb|AAF70313.1|AF260326_2 SrrB [Staphylococcus aureus]
          Length = 583

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 922

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 135/261 (51%), Gaps = 15/261 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      ++ AE+ N AK  FLA++SHE+RTPLN ++G  ++I         +
Sbjct: 527 ITERKRYEDALVVAKEAAEQANRAKDEFLANISHEVRTPLNGVMGMLQLIR----VSATS 582

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +    +S ++LL ++N++LD S+IEAG+ +L      L  ++R+C+ + + +A 
Sbjct: 583 GEQLANVDIAIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQAD 642

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           EK + +  +IDPS       DE  +RQV+ NLL NA+KFT   G + +     +      
Sbjct: 643 EKGLVLDSRIDPSARECYLGDEGRIRQVLFNLLGNAIKFTMY-GSITLEAYALAHPEPGC 701

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              + S+ D G GI + ++  +  SF Q   ++    +GVGLGLPI + ++   GG  ++
Sbjct: 702 ERLFFSVTDTGVGIPDSKVDYIFDSFTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLVV 761

Query: 459 RSKLREGVE----VIAILPNT 475
            S++  G      V   +P  
Sbjct: 762 DSEMGAGTTILFNVQVRIPAK 782


>gi|148547257|ref|YP_001267359.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511315|gb|ABQ78175.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 750

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 156/378 (41%), Gaps = 18/378 (4%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L  +      T     ++    L       +   + L              +        
Sbjct: 135 LGAVHRRLYATGLASLLWMGVFLCGLAVALSGLFYRLVTRHLQVMAEFARRIGAGQWQEP 194

Query: 183 HVLDISLAG-------MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             L    +        +          I   + +     L  Q ++D+L A +E   +  
Sbjct: 195 LRLGRRRSSRPDEIDTVANALDDMRRAILSDIERRERDRLELQDKRDELQAMVERRTASL 254

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +  AE  NLAKSRFLA+MSHELRTPLN ILG +E++    +   +    ++ +  ++
Sbjct: 255 ARAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRGGRLEVAD----RQRVEALY 310

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           ++G+ LL ++NE+L  +R+E G         SL  + +E + +L+  A E    +  ++D
Sbjct: 311 KAGEGLLAILNEVLYFARLEEGESRAERVVFSLRQLCQEVLALLEPMAMENADTLQLQVD 370

Query: 356 PSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPG 411
             L++  +  E+ +RQV+ NLL+NA+KFT  G     V V       +   +S++DNG G
Sbjct: 371 EQLAAYQYGAEQYLRQVLSNLLANAIKFTEYGQVQLTVQVLANNECSQRLRLSVRDNGIG 430

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I       +   F Q S A+     G GLGL   + ++   GG   + S   +G      
Sbjct: 431 IEPAVQAKIFDRFVQASEAVTQRYGGTGLGLATCKHLVEKLGGSIGLESVQGQGSCFWFE 490

Query: 472 LPNTR---VLNFIPEDNH 486
           L   R   V   +P  + 
Sbjct: 491 LDMARGQPVSAGLPAPSP 508


>gi|303258086|ref|ZP_07344094.1| putative two-component sensor protein [Burkholderiales bacterium
           1_1_47]
 gi|330998701|ref|ZP_08322430.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Parasutterella excrementihominis YIT 11859]
 gi|302859105|gb|EFL82188.1| putative two-component sensor protein [Burkholderiales bacterium
           1_1_47]
 gi|329576440|gb|EGG57952.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 628

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 176/457 (38%), Gaps = 15/457 (3%)

Query: 17  SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPIL--PLFVLLVANIGTWFTQNPIFPM 74
             T  HL L   +++    ++  L V      + +    L  L+       +    +  +
Sbjct: 19  EATNYHLHL-SGARLASKVQLRQLSVLKHRTTAVVAIRMLLYLIFTLTCWSYVGGWVMAL 77

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W    +    A++       N        + W+   L   +  GL               
Sbjct: 78  WLAFNVMHTLASMKSADDFFNEPSMDKRFHYWKNRTLQMILVSGLSIGFAGFYFMVPDN- 136

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGML 193
             +       +++ ++  ++  + +       F P  +     + ++             
Sbjct: 137 -VIVEMILLAMIVGVTFGSVPLYAIWLPALWIFVPATLLPTILKLVLIYQPSLFIALFWT 195

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                   Y    L K  ++ +    E++ L+ +L   +  +D  R+ +E    A++RF 
Sbjct: 196 LILFLIIFYFGVRLNKIYLQGIYRSFEREFLMEQLIFQRQKADYIREASEMAISARTRFF 255

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+ +H+LR PL A+  F  +++ +      ++  K  I ++ ++   +  L+++IL +S+
Sbjct: 256 AAANHDLRQPLQAMGIFISILQGQ-----ADQQAKPLIDNLSKACNTVATLVDQILIISK 310

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +++   ++  + +S+  +  E        A+ K +    + +P    +  D     +V+ 
Sbjct: 311 LDSKTMKIRPTEVSIRSMFSELANEFTPMAEHKGLTFEVRAEP--LMIVTDGLLFERVLR 368

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NAV++T  GG + +    T      +++ D+G GI + +   +  ++ +G    KS
Sbjct: 369 NLIGNAVRYTEHGG-ILLRAKKTKKNTLVVTVSDSGCGITKEDQAKLFQAYYRGGAGHKS 427

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             +G GLGL I   I      +  + SK+ +G     
Sbjct: 428 R-EGFGLGLSIVDKICKLLNIELKLISKVGKGSIFRL 463


>gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
 gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
          Length = 1177

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 147/355 (41%), Gaps = 6/355 (1%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W L+  +           + K     +  +I  +       + F++   + +  + + + 
Sbjct: 383 WALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVS 442

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           +  + +  +       +         + +S  + +S    ++    ELE    +  +   
Sbjct: 443 AGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELENNLLIIRKQND 499

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  N  K  FLA+ SHELRTPL+ ++G +E +     GPL    +K  +  I  SGQ 
Sbjct: 500 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLT-AAHKYQLDIIISSGQR 558

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G  ++ + A+ L    R  + +      +K + I  ++      
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVW 618

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   ++  +
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEQI 676

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 677 FEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPLA 731


>gi|224543643|ref|ZP_03684182.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523416|gb|EEF92521.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
          Length = 529

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 7/232 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY-IGDIHRSGQHLLN 303
               +  F +S+SHEL+TP+ AI G+SE++     G +N+E  K+  +  I     ++ +
Sbjct: 303 SQKMREEFFSSVSHELKTPITAIRGYSELLSQ---GFINDENQKKMMLSKIQTEVTNMSS 359

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN+IL LSR+++    + +  + +  ++++     +    + N+E+   +DP   +   
Sbjct: 360 LINDILMLSRLDSDDLIVEKVPVKMQALMKDISQDYEGLLLKYNVELHTDVDP--ITYIG 417

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +   +  +I NL+SNA+K+    G V+V + ++     +I +KD G GI   +   V   
Sbjct: 418 NGSQIETLISNLVSNAIKYNKEDGHVYVHI-YSKEDNMFIEVKDTGIGIPLADQGRVFER 476

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +        + G GLGL I + I++ + G   + S+L EG  +   LPN 
Sbjct: 477 FYRVDKGRSRIKGGTGLGLAIVKHIVSYNKGTVKLHSQLGEGTCITITLPNK 528


>gi|168263777|ref|ZP_02685750.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|194443927|ref|YP_002040646.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194402590|gb|ACF62812.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|205347616|gb|EDZ34247.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 920

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|166032342|ref|ZP_02235171.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
 gi|166028065|gb|EDR46822.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
          Length = 859

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA-KSLSDETRKRAEEENLAKSRFLASM 256
                    +   +V  +    +  D   + E+A +    +  K A   N AK+ FL  M
Sbjct: 432 CALFIAQEKVPTESVTEVLYVTQIIDDYKQKELAYQQELVKALKEARIANDAKAEFLRKM 491

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SH++RTP+N I+G  ++   E     + E  KE    +  +  +LL+L+N++LD++++E 
Sbjct: 492 SHDIRTPINGIMGMLDI---EEKNWDDPERLKECHEKMKVTAGNLLHLVNDVLDMNKLET 548

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ--KIDPSLSSVWADEKGMRQVILN 374
            R E+      + +++R C   L+ +A++  +E+ +    +     V       RQ+  N
Sbjct: 549 SRLEVEHKPFDIREVLRGCWTDLESQAEKMGLELEKSGVSEIECPHVVGSPMYFRQIFAN 608

Query: 375 LLSNAVKFTAIGGRVHVTV---GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +LSNAVK+  I G++ + V     T     Y  S+ D G G+ E     +  +F Q    
Sbjct: 609 ILSNAVKYNKIHGKITLRVDMVSRTEDDVVYRFSVSDTGIGMNEEFQKHIFETFTQEDTG 668

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            ++  +G GLG+ IA+ ++   GG   I+SK   G   I +LP  
Sbjct: 669 ARTVYRGTGLGMAIAKKLVDALGGTIKIKSKKNVGSTFILVLPFA 713


>gi|161614192|ref|YP_001588157.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363556|gb|ABX67324.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 920

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPEQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
 gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+ A+ L    R+ +   +  KS F+A+MSHE+RTPLNAI+GFS ++    +   + 
Sbjct: 169 VTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASSE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +   +     D++RE   + + +  
Sbjct: 225 EERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++E+  +       ++++ + + QV+ NLL NA+KFT   G + +             
Sbjct: 285 NSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFT-ESGEIRLGCSLKGTEEVCFV 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG   + S++  
Sbjct: 344 VSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSEINR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+ A+ L    R+ +   +  KS F+A+MSHE+RTPLNAI+GFS ++    +   + 
Sbjct: 169 VTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASSE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +   +     D++RE   + + +  
Sbjct: 225 EERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++E+  +       ++++ + + QV+ NLL NA+KFT   G + +             
Sbjct: 285 NSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFT-ESGEIRLGCSLKGTEEVCFV 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG   + S++  
Sbjct: 344 VSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSEINR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|254420242|ref|ZP_05033966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186419|gb|EDX81395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 549

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 195/446 (43%), Gaps = 13/446 (2%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQN---PIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
           + L R+     +  L+   I +        P         LAV A   ++G        +
Sbjct: 102 DRLTRLGIAALVLPLVSGLISSLLNGAEAQPPVLAAVSGLLAVAATASAIGLTWNERRKR 161

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
           +         +     A      LL                 S   L+   + A  +   
Sbjct: 162 LTLAEANSRRVEAVLNAQPGLTLLLDPAGRAVAAWGAPPPSVSIDALVNQGLIAAVHAPD 221

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             AV  +        + + + S          M+                   ++++   
Sbjct: 222 RPAVAAALQRAAAGQTAEILFSPRQALDRRVVMILRRFDHGQDSGGDSGGDPPRLIAQAF 281

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +     A     +   +  R  AE ++  K+RFLA+MSHELRTPLNA++GF++++     
Sbjct: 282 DGTAQFA----RELGLESARAEAEAQSAGKTRFLANMSHELRTPLNAVIGFADIMRQRLF 337

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           GPL  + Y  Y   IH++G HLL+LIN++LDLS+IEA RYEL+  ++   D V   + ++
Sbjct: 338 GPL-PDRYAGYADSIHQAGGHLLDLINDVLDLSKIEAERYELALESLDARDPVSAAVALV 396

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +++A +K +++   +     +V AD + ++Q+ LNLLSNAVKFT  GG V +T+    G 
Sbjct: 397 RVQADDKGVDLAPVLPSIPLTVQADARALKQMALNLLSNAVKFTPTGGSVTLTLDGV-GP 455

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GIA  ++  V   F Q   A +   QG GLGL + +S+   HGG+  I 
Sbjct: 456 YLELVVSDTGVGIAPEDLRRVGRPFEQAGGADQ-KAQGTGLGLSLVRSLTELHGGRMSID 514

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           S L EG  V+  LP   V+   P + 
Sbjct: 515 STLGEGTAVMVRLP---VIPIEPVET 537


>gi|37781575|gb|AAP35032.1| SrrB [Staphylococcus aureus]
          Length = 583

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|327438193|dbj|BAK14558.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 611

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 4/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F+A++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 375 EKIDMERREFVANVSHELRTPLTTMRSYLEALAEGAWKDENIAPT--FLNVTQTETERMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  YEL+   +       + I   +  ++ +N+E  + +      V 
Sbjct: 433 RLVNDLLQLSKMDSQEYELNLEFVEFNKFFTQIIDRFE-MSKSQNVEFIRLLPEKSYFVD 491

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N++SNA+K++  GG +             + I D+G GI +  +  +  
Sbjct: 492 IDTDKLTQVIDNIISNALKYSPDGGNIRFGFT-VHDNMIRVMISDDGMGIPKENVTRIFD 550

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   +  G GLGL IA+ ++  HGG+    S+  +G  +   LP
Sbjct: 551 RFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 601


>gi|282897084|ref|ZP_06305086.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197736|gb|EFA72630.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 638

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  + E +       L  +  +E++  ++     L  
Sbjct: 390 ELNEAKSQFISNISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTR 448

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR       + L   + + +   QL A+EK I + Q++  +L  V  
Sbjct: 449 LVNDVLDLSKLESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELASNLPMVIG 507

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------GRGQYISIKDNGPGIAEGE 416
           +   + QV  NL+ NA+KFT  GG V +                  I I D G GIA  +
Sbjct: 508 NYDLLLQVFGNLIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPED 567

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   F +         +G GLGL I ++IM  H  Q  + S++  G      L
Sbjct: 568 QEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIMERHHSQMHLVSEVGVGTTFWFDL 622


>gi|237716144|ref|ZP_04546625.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262407756|ref|ZP_06084304.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647233|ref|ZP_06724831.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809621|ref|ZP_06768313.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229443791|gb|EEO49582.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354564|gb|EEZ03656.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637413|gb|EFF55833.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443164|gb|EFG11939.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 644

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 339 WGLDPAVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 398

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    +G    
Sbjct: 399 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTE 451

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 452 EEQQSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 511

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
               +           +  D + M+QV++NLLSNA KFT   G++ +        +    
Sbjct: 512 SSENQFLFTTSFESFRMVTDVQRMQQVMINLLSNANKFT-KCGKITLDFSVNEETQMAVF 570

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 571 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWKGSIWIDPDYT 626

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 627 GGARFVFSHPL 637


>gi|168240904|ref|ZP_02665836.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447656|ref|YP_002045397.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200389522|ref|ZP_03216133.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194405960|gb|ACF66179.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|199601967|gb|EDZ00513.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205339630|gb|EDZ26394.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 920

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|75762154|ref|ZP_00742053.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898302|ref|YP_002446713.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|74490357|gb|EAO53674.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542070|gb|ACK94464.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 458

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLTIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|330836363|ref|YP_004411004.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
 gi|329748266|gb|AEC01622.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
          Length = 517

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 143/356 (40%), Gaps = 18/356 (5%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               +T+  +A +   + ++    F+L  A      P   A     +       ++    
Sbjct: 170 QGIAMTLVVAALIAGGVVVAYFLAFVLYAAYMGHTVPENGATFFTLLWRYS--SVAFFFF 227

Query: 193 LATALSFFTYITY-HLFKSNVKILSCQAEKD---------DLIAELEVAKSLSDETRKRA 242
           L           +  L    +K L C A  D               E      +E     
Sbjct: 228 LRWYFRQSPITKHIRLLSEVMKALDCIARGDFSVRLNHDLKENEPFETLVKSINEMTLSL 287

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHE+++PL  I GF+ ++  + + P   E    ++  I      L 
Sbjct: 288 EQMENMRQEFISNVSHEIQSPLATINGFARLLYNDELSP---EKRNHFLNIIETETMRLS 344

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L   +L L+ +E    +       +   +R  ++  + +  EKNI +  +      ++ 
Sbjct: 345 RLSENLLKLAALETDSVKFEPKPYRIDKQLRALLLGYEPQWNEKNITM--EASLDTVTLT 402

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE  M QV +NL+ N++KFT  GG + V +    G+     I D G GIAE     +  
Sbjct: 403 ADEDMMSQVWINLIHNSIKFTPDGGSIQVEL-HEHGKSVICKISDTGIGIAEDAQKHIFE 461

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            F +   + +  ++G GLGL IA++I+  HGG   + SKL  G      LP +  +
Sbjct: 462 RFYKADKSRERTKKGSGLGLAIAKTIIEMHGGTITVYSKLGAGTTFTVSLPVSPPM 517


>gi|323129664|gb|ADX17094.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 936

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 285 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 338

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 339 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 398

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 399 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 454

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 455 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 514

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 515 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 572

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 573 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 628

Query: 475 TRVLNFIP 482
                  P
Sbjct: 629 QEYQPPQP 636


>gi|302333163|gb|ADL23356.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 583

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCAENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1317

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 31/278 (11%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I++ +  +    +  + AE  NLAKS FLA+MSHELRTPLNAILGF++V+      P 
Sbjct: 802  RDISDRKRREIELWQAMEAAESANLAKSTFLANMSHELRTPLNAILGFTQVMARN---PA 858

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 KE +  I RSG +LL+LIN+ILDLS+IEAG   L E+   LI ++     ML  R
Sbjct: 859  LTPELKEDLQTIGRSGDYLLSLINDILDLSKIEAGHSTLEETGFDLIALLHSLQNMLAER 918

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
               K ++++  + P+L   + AD + +RQV+LNLLSN++KFT   G + + V        
Sbjct: 919  VNSKKLQLYFDVAPNLPQFILADSQKLRQVLLNLLSNSLKFT-DLGYITLRVRSEESSLT 977

Query: 402  Y-------------------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
                                        + D G GI+  E+  +  +F Q   A K A+ 
Sbjct: 978  VRGLEAPEISNLDPTISNVTPKTSLLFEVTDTGVGISPQELDNIFDAFVQT-QAGKRAKN 1036

Query: 437  GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLGL I++ ++   GG+  + S   +G      +P 
Sbjct: 1037 GTGLGLTISRKLIEIMGGEIFVNSTPGQGSTFTFTVPV 1074


>gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
 gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
          Length = 1177

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 148/360 (41%), Gaps = 6/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              + W L+  +           + K     +  +I  +       + F++   + +  +
Sbjct: 378 LKSIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWA 437

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S  + +S    ++    ELE    + 
Sbjct: 438 AERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELENNLLII 494

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GPL    +K  +  I 
Sbjct: 495 RKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLT-AAHKYQLDIII 553

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++ + A+ L    R  + +      +K + I  ++ 
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVS 613

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAE 671

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 672 QLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPLA 731


>gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 682

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           V       E+ +    L  A     +  +R  E +  K  F++S+SHELRTP+ +ILG++
Sbjct: 418 VSTSEDITERVEAEGRLVEALETERQAVERLREVDQVKDAFVSSVSHELRTPITSILGYT 477

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++E    G L  E   + +  +  +   LL+LIN++L LSR++     + +    L  +
Sbjct: 478 EMLEDGVYGDLGREQL-DAVRRVAANSTRLLSLINDLLTLSRVQEDEIGIVDRVFDLRSV 536

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V     ++    + +++E+  ++         D   + +V++NL  NA KFT  GGR+ V
Sbjct: 537 VSAGTAVVAPTLERRSLELTAELPDEPVPFLGDRDMLERVVINLAGNAAKFTPEGGRIGV 596

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +         I + D G GI   E   + + F + S+A + A  G GLGL IA +I+  
Sbjct: 597 RL-LVGPEESVIEVSDTGIGIPHQEQERLFSRFFRSSLAQERAIPGSGLGLSIAHAIVEK 655

Query: 452 HGGQFLIRSKLREGVEVIAILPN 474
           HGG   + S+  EG      LP 
Sbjct: 656 HGGTMSVDSEPGEGTTFRVHLPA 678


>gi|228901738|ref|ZP_04065910.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
 gi|228857870|gb|EEN02358.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
          Length = 448

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLTIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 775

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +       +   L   ++    I++  VA+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++        +  + +  +G I R+GQHLL LINE+LD++RIEAG 
Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377
             LS   +SL  +++E ++++   A + NIE+      P    V AD + + QV+LNLLS
Sbjct: 470 VSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELPHLPDELGVIADRQRLVQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V  ++ R   +S+ D G GIA   +  +   F +       + +G
Sbjct: 530 NAIKYNRPDGQVRIEVDRSAER-VTVSVVDTGYGIAPERLGQLFKPFERLDA--NPSVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GLGL +++S++    G   +++   EG      LP   V    
Sbjct: 587 TGLGLALSKSMLEMMNGTLSVQTTQNEGCRFTLALPFVAVHAPT 630


>gi|257425614|ref|ZP_05602038.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428275|ref|ZP_05604673.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430912|ref|ZP_05607292.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433601|ref|ZP_05609959.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257436514|ref|ZP_05612558.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282904071|ref|ZP_06311959.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|282905898|ref|ZP_06313753.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908808|ref|ZP_06316626.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911127|ref|ZP_06318929.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914296|ref|ZP_06322082.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282919265|ref|ZP_06327000.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282924590|ref|ZP_06332258.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|283958253|ref|ZP_06375704.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503373|ref|ZP_06667220.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510388|ref|ZP_06669094.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
 gi|293530927|ref|ZP_06671609.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|257271308|gb|EEV03454.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275116|gb|EEV06603.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278342|gb|EEV08978.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281694|gb|EEV11831.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257283865|gb|EEV13988.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282313425|gb|EFB43820.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|282317075|gb|EFB47449.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282321477|gb|EFB51802.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282324822|gb|EFB55132.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327072|gb|EFB57367.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331190|gb|EFB60704.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595689|gb|EFC00653.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|283790402|gb|EFC29219.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920195|gb|EFD97261.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095039|gb|EFE25304.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466752|gb|EFF09272.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
          Length = 582

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 413 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-D 471

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 472 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 530

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 531 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|297590965|ref|ZP_06949603.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|76363428|sp|Q6GGK7|SRRB_STAAR RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|297575851|gb|EFH94567.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438041|gb|ADQ77112.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195388|gb|EFU25775.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 583

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|330810584|ref|YP_004355046.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378692|gb|AEA70042.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1131

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 8/324 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               L Y       P           +     ++L+ + A    +          +  + 
Sbjct: 587 GALALIYGQASQGLPHSPQAQATLYQAFFKAFLTLSVLAAILAWWVVLTRESRHVAQEES 646

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                     I    +      + ++ +E  N AKSR++  +SHELRTPLN+ILGF++++
Sbjct: 647 DRQTQLLMQEIEAHRLTDQALQDAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQIL 706

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + +   P   E +++ +  I RSG HLL+LI+ +LD+++IEAG+  L  + I   +++ +
Sbjct: 707 QRDAAMP---EQHQDALATILRSGSHLLSLIDGLLDVAKIEAGKLRLEATEIPFPELIHD 763

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +M   +A++K +    ++   +   V  DEK +RQ+++NLL NAV FT   G V + V
Sbjct: 764 LELMFTPQARDKGLRFRLELIGKMPAVVRGDEKRVRQILINLLGNAVNFTDS-GEVCLRV 822

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            +         I D G GI    I  +   F +G   +   ++GVGLGL I + + +  G
Sbjct: 823 SYMRE-TATFDIIDTGIGIDPEHIERIFQPFERGD--LMRQDKGVGLGLTITRMLTSLMG 879

Query: 454 GQFLIRSKLREGVEVIAILPNTRV 477
           G+  ++S+  +G      L  ++V
Sbjct: 880 GELQVKSQQDKGTCFQVRLFLSQV 903


>gi|282924740|ref|ZP_06332407.1| sensor protein srrB [Staphylococcus aureus A9765]
 gi|282592747|gb|EFB97753.1| sensor protein srrB [Staphylococcus aureus A9765]
          Length = 582

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 413 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 471

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 472 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 530

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 531 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|110639462|ref|YP_679671.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110282143|gb|ABG60329.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 856

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 17/259 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + L    +++AE  +  K+RFL++MSHE+RTP+NAILGF+ ++  + +     E  K
Sbjct: 341 REQQELMRVAKEKAESASQFKTRFLSNMSHEIRTPINAILGFTAILSKQEL----TEQQK 396

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + + +I  SG+ LL LI  ILD+S+IE G+  +   +  L + +R  +   Q  A EK +
Sbjct: 397 KLLKNISISGELLLKLIGNILDISKIEEGKVIIESKSFHLKESIRSVLSPFQHSASEKGL 456

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
           +    ID S+   +  D   + QV++NL+ NA+KFT   G + V+V  T  +        
Sbjct: 457 QFHLIIDKSIPDYLLGDFPRISQVLVNLIGNALKFT-SHGNITVSVLLTKKQDGLSFVEF 515

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS--- 460
            I D G GI   +   +  SF Q + +I     G GLGL I Q ++   GG   ++S   
Sbjct: 516 VINDTGIGIQANKQDEIFESFTQANESISVKYGGSGLGLSIVQEVVHLMGGNIQVQSPAH 575

Query: 461 --KLRE--GVEVIAILPNT 475
             +  +  G +    LP  
Sbjct: 576 YNERGKGYGSKFFFTLPFK 594


>gi|300769974|ref|ZP_07079853.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762450|gb|EFK59267.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 542

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           KS ++ +  Q +  +  AELE +K     +++ AE+   +K  FLA+MSHE+RTP+N I+
Sbjct: 120 KSFMQQVLTQLQIKEKNAELEQSKQELIRSKEEAEQARKSKEIFLANMSHEIRTPINGIM 179

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G ++++   T+        K+++  +  +   LL +IN+ILD+S+I++G  +L    +  
Sbjct: 180 GITQMLRSSTLSS----EQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVF 235

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+  +   + +++A  KN+E    ID  L + V  D   ++Q++ N +SN +KFT  G 
Sbjct: 236 QDLFDDLNKIFKIKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGK 295

Query: 388 -RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             + + +            S+KD G GI    +  +  +F Q    I     G GLGL I
Sbjct: 296 VTLSIRILEVKDNSYFIRFSVKDTGIGIRAESLNKIFLAFEQADDGITKKFGGTGLGLAI 355

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIA 470
            + +     G     S   EG E   
Sbjct: 356 VKRLADLFNGSVDATSVYNEGSEFSF 381


>gi|222151605|ref|YP_002560761.1| hypothetical protein MCCL_1358 [Macrococcus caseolyticus JCSC5402]
 gi|222120730|dbj|BAH18065.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 570

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F+A++SHEL+TP+ +I GF+E +        + +T + ++  I +    +  L
Sbjct: 343 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGA--KEDKDTLEMFLDIILKESNRIQVL 400

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++E+L+LS+IE   +  +   ++L   V   + ++   A++KNI    +++ +L  V A+
Sbjct: 401 VSELLELSKIEQANH-FNMVKVNLPQKVFNSVEVVYPLAEKKNINFNLELEKNL-FVLAE 458

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              ++QV++NLLSNA+ ++     V V     +     + I D G GIA  E   +   F
Sbjct: 459 PSKLKQVMINLLSNAINYSPEDAEVTVKAYLKAD-ECIVEIIDQGIGIAPEETTRIFERF 517

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   A      G GLGL I + I+    G+  + S+L +G      L
Sbjct: 518 YRVDKARSRDSGGTGLGLAIVKHIIEVFNGEIDVESELGKGSTFRIKL 565


>gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 952

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 8/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +      R++AE  N AKS FLA++SHELRTPL+A+LGF++++  +     
Sbjct: 463 RDITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLMSRDD---N 519

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              T  EY+  I+R+ +HLL+LINE+LDL++IE+GRY  + + + +  ++ +   +   +
Sbjct: 520 LTATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRRLLADLQALFGPQ 579

Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A+ K +++    +      + +DE  +R +++NLL NA+KFT  GG V +    T  +  
Sbjct: 580 AEAKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTH-GGSVRLRAD-TDKQQM 637

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           Y  ++D G GI+  E P +   F QG   A  S++ GVGLGL I+       GG   + S
Sbjct: 638 YFIVEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFARLIGGDLSVYS 697

Query: 461 K-LREGVEVIAILPNTRVLNFI 481
               +G      LP    +   
Sbjct: 698 AGEGQGARFTLTLPLRTPVTSS 719


>gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 524

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN ++G  + +    +         E +  I  SG  L  L+++I
Sbjct: 151 KSDFLANMSHEIRTPLNGVIGIVDALSRTGL----EPAQAEMVDLIRDSGTTLERLVSDI 206

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD+S+IEAG+ +L   A  L D +R  I +++ +A +K +     I P +S +   D   
Sbjct: 207 LDVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEVSGTFLGDSTR 266

Query: 368 MRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           ++QV+ NLLSNAVKFTA G  V    VT          ++I+D G G  E +   +   F
Sbjct: 267 LKQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDEEQAALLFGRF 326

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q    I     G GLGL I +S+M   GG+    S+   G      LP  RV    P D
Sbjct: 327 NQADSTITRRFGGTGLGLSICRSLMQLMGGEIDASSEPGVGSRFCITLPLPRVDQQAPSD 386


>gi|168239276|ref|ZP_02664334.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738250|ref|YP_002114407.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204927498|ref|ZP_03218699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194713752|gb|ACF92973.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197288021|gb|EDY27408.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322840|gb|EDZ08036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 920

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|229197363|ref|ZP_04324090.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
 gi|228585987|gb|EEK44078.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
          Length = 448

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 236 DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  R+RAE   E + AK+ F +++SHE RTPL  I G    +    +   ++   +E + 
Sbjct: 332 EAERRRAEALAELDRAKTDFFSNVSHEFRTPLTLIAGPVAELRASPVAA-SDPRVREELE 390

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I R+ Q L  L+N +LD SRI+AGR +     + L     E   + +       +E   
Sbjct: 391 VIERNAQRLGRLVNTLLDFSRIQAGRIDARFEPVDLAATTAELASVFRSAVARAGLEFTV 450

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
              P    V  D     +V+LNLLSNA+KFT  GG + V +         +S+ D G GI
Sbjct: 451 DCAPLDGPVHIDRDMWEKVVLNLLSNALKFTFTGG-IAVRL-RQEDGSARLSVTDTGTGI 508

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI- 471
              E+P +   F + + A   + +G G+GL + + ++  HGG   + S    G       
Sbjct: 509 PADELPRLFERFHRVADARGRSGEGSGIGLAMVRELVGLHGGTIDVDSAPDTGTTFTVTL 568

Query: 472 ------LPNTRVLNFIPED 484
                 LP  R+   +P+ 
Sbjct: 569 PMGAAHLPVDRLAEPVPDA 587


>gi|154482556|ref|ZP_02025004.1| hypothetical protein EUBVEN_00223 [Eubacterium ventriosum ATCC
           27560]
 gi|149736581|gb|EDM52467.1| hypothetical protein EUBVEN_00223 [Eubacterium ventriosum ATCC
           27560]
          Length = 484

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 134/310 (43%), Gaps = 16/310 (5%)

Query: 172 VALSTQAIMSMHVLD-ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           VA++   ++   +      A M    +         + K N++      E  D+  E   
Sbjct: 188 VAIADVLVLIFALFASWLCAVMFTKPIKRIGISIEEIAKGNMEEEKDYREVMDISNEFRQ 247

Query: 231 AKSLSDETRKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             +  +            KSR  F++++SHEL+TP+ ++   ++ +  +    L  E Y+
Sbjct: 248 LVNKLN---------TQEKSRQEFVSNVSHELKTPITSMKVLADSLLGQQG--LPEELYQ 296

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++ DI +      ++I ++L L R+E    E++ S++++ +I+   +  L+  A+ KNI
Sbjct: 297 EFLHDISKEIDRENDIITDLLALVRMEKSESEINISSVNINEILEAVLKRLKPIAESKNI 356

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E+  +          DE     V  NL+ NA+K+    G V  ++  +  +  Y+ + D 
Sbjct: 357 ELIFE-SFRPVIADVDELKFASVATNLVENAIKYNNTDGTVTASLN-SDHQYFYLKVTDT 414

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E     V   F +   A      G GLGL I + I+  H G   I SK  EG   
Sbjct: 415 GIGISEENQDRVFERFFRVDKARSRETGGTGLGLAITKEIVMKHHGSIKIHSKEGEGTTF 474

Query: 469 IAILPNTRVL 478
              +P   + 
Sbjct: 475 TVRIPLKYIA 484


>gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum]
          Length = 1762

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 134/298 (44%), Gaps = 17/298 (5%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            L +    +     E +    E+E A+   +E  ++    +  KS FLA+MSHELRTPLN+
Sbjct: 1038 LGEKARLLAQQNVEVERKNREVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNS 1097

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +L  S+ +   T   L      E+   IH SG  LL LIN+ILDLS+IE+G   +    +
Sbjct: 1098 LLILSDQLSKNTDRNLTG-RQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGEL 1156

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385
            S  D+        Q  A+ K +E       +L  V + D K ++QV+ NLLSN+ KFT  
Sbjct: 1157 SFSDLQDYVERTFQHVAESKRLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTER 1216

Query: 386  GGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             G V + V   +                  +S++D G GI   +   +  +F Q   +  
Sbjct: 1217 -GSVALDVDLVTSGWTIENEGLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTS 1275

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
                G GLGL I++ I    GG+  + S+   G      LP T      P    ++ +
Sbjct: 1276 RKYGGTGLGLAISREIAWMLGGEIKLSSRPGSGSTFTLYLPLTYT-PARPRRKEQAAE 1332


>gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata]
 gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum
           gloeosporioides]
          Length = 745

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 21/262 (8%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E + +  E   +KSRFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I
Sbjct: 99  LLEAKLK--EAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTI 152

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             S   LL +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   +
Sbjct: 153 QTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIV 212

Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYIS 404
           +  +   V  D+  +RQV+LN++ NA+KFTA  G V                       +
Sbjct: 213 EEDVPAWVKGDKVRIRQVLLNVIGNAIKFTAE-GEVFSRCRIFTNTKSALSNDEIMLEFA 271

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G G  + E   +   F Q   +      G GLGL I++ ++  HGG+    +   +
Sbjct: 272 VIDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGK 331

Query: 465 GVEVIAI----LPNTRVLNFIP 482
           G          LP +      P
Sbjct: 332 GSTFTFTAKFALPTSADHPDGP 353


>gi|62179983|ref|YP_216400.1| secretion system regulator:sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127616|gb|AAX65319.1| Secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714450|gb|EFZ06021.1| secretion system regulator:sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 920

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|325921205|ref|ZP_08183069.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548312|gb|EGD19302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 894

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 9/248 (3%)

Query: 230 VAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             + +  + R++ AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    N   +
Sbjct: 497 QQEWILAQQRQQLAEQASVAKSNFLANLGHEVRTPMTGVLGMSELLLATPL----NAKQR 552

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            ++  I ++G HLL L+N+ LDL+RIEAG+ EL +       + +E    +   ++ + +
Sbjct: 553 SHVDAIRKAGAHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPISEARGL 612

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
               +   P+   V  D   +RQ+++NLL NA+KF+   G V +T     G      ++D
Sbjct: 613 RFHYRNQLPAQLVVLGDATRVRQILINLLGNAIKFSER-GEVSLTASQ-HGEVLRFKVRD 670

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           +GPGI   +   +   F Q   A  S    G GLGL I Q +     G   +RS+L  G 
Sbjct: 671 SGPGIGPEQQKRLFQRFEQADGAHTSARYGGSGLGLAICQELTVAMKGTIRVRSRLGVGT 730

Query: 467 EVIAILPN 474
           +    LP 
Sbjct: 731 QFSVDLPL 738


>gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 595

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 130/248 (52%), Gaps = 18/248 (7%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHELRTPLNAILG++++++   +        K     I  SG+HLL +I +I
Sbjct: 276 KSQFLANMSHELRTPLNAILGYAQLLKSSDLSSQQLSAVK----TIQHSGEHLLTVITDI 331

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD++++EAGR EL      +         M+++RA++K +     I   +   V ADEK 
Sbjct: 332 LDIAKVEAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKR 391

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           MRQV++NLL NA+KFTA  G V ++V   S          ++ D G GI   ++ ++   
Sbjct: 392 MRQVLINLLGNAIKFTAA-GEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQLDSIFRP 450

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFI 481
           F Q   +I     G GLGL I   I+   GG   + S++ +G         P       +
Sbjct: 451 FEQAGNSIS-KSGGTGLGLSITHQIVKLMGGDIKVESEVGQGSCFTVEAEFPLA-----V 504

Query: 482 PEDNHEST 489
            ED+ E+T
Sbjct: 505 AEDDREAT 512


>gi|303246750|ref|ZP_07333027.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491767|gb|EFL51647.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 939

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 157/385 (40%), Gaps = 17/385 (4%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                    +  +     ++   A G+    + +  P                 +A + +
Sbjct: 287 ARREAEDRQQRALALHRAILESTAEGM----VCVSWPLPGDVLAHNRRFLELWGLAENWA 342

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           AL        +  +      A +  A +      +    +      F    +  + +   
Sbjct: 343 ALPESERARLLLDNLADPEAARAGYAALMGDGERLETTVLALRDGRFLERRSGPIRQGRS 402

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            I    +  D  + E    +  +++ +  AEE + AK  FLA MSHE+RTPLN ++G +E
Sbjct: 403 TIGRVFSYVD--VTEEIRRRDRTEQQKTMAEEASKAKGAFLAVMSHEIRTPLNVVIGLTE 460

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
               E +        +++   I +S  HLL ++N++LD S+IEAG+  L     ++ ++V
Sbjct: 461 ----ELLAGEATGEQRDHFRIIQQSAAHLLGVVNDVLDFSKIEAGKLVLERIDFNVRELV 516

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                +    A+ K ++   ++D ++ + +  D   +RQV+LNLL NAVKFT   G V +
Sbjct: 517 AGVADVFAREARVKGLDFSTRVDDAVPAFLRGDPGRLRQVLLNLLGNAVKFT-ESGSVSL 575

Query: 392 TVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            V   +       G  I + D G GIA      +   F QG+ AI     G GLGL I++
Sbjct: 576 DVAPAASGPPDRVGIAIRVADTGIGIAPDRREGIFEDFQQGAGAIARRFGGTGLGLAISK 635

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            I+   GG   + +    G      
Sbjct: 636 GIVTRMGGTISVEANPGGGSVFTCT 660


>gi|150008008|ref|YP_001302751.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936432|gb|ABR43129.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 508

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 276 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 331

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+IE+G+ E   + + L +I         LR     +++  + D 
Sbjct: 332 SNEFLLQLIGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVA-PGVKVIFESDG 390

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 391 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 448

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 449 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 501


>gi|57650447|ref|YP_186376.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195296|ref|YP_500100.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221611|ref|YP_001332433.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|221140088|ref|ZP_03564581.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253733261|ref|ZP_04867426.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451149|ref|ZP_05699184.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|284024551|ref|ZP_06378949.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848521|ref|ZP_06789267.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|297207789|ref|ZP_06924224.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911870|ref|ZP_07129313.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|76363425|sp|Q5HFT1|SRRB_STAAC RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363429|sp|Q6G973|SRRB_STAAS RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363430|sp|Q8NWF3|SRRB_STAAW RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|123003464|sp|Q2FY80|SRRB_STAA8 RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|57284633|gb|AAW36727.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|87202854|gb|ABD30664.1| staphylococcal respiratory response protein SrrB, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374411|dbj|BAF67671.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|253728801|gb|EES97530.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861204|gb|EEV84017.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|294824547|gb|EFG40970.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|296887806|gb|EFH26704.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886116|gb|EFK81318.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|315198818|gb|EFU29146.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140625|gb|EFW32479.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144161|gb|EFW35930.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 583

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|30260804|ref|NP_843181.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47525929|ref|YP_017278.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183642|ref|YP_026894.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65318076|ref|ZP_00391035.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872713|ref|ZP_02217342.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167635201|ref|ZP_02393517.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640886|ref|ZP_02399144.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170689022|ref|ZP_02880222.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170708472|ref|ZP_02898914.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177652843|ref|ZP_02935216.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568579|ref|ZP_03021485.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227816480|ref|YP_002816489.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229602121|ref|YP_002865248.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254684273|ref|ZP_05148133.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722077|ref|ZP_05183866.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738738|ref|ZP_05196441.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742050|ref|ZP_05199737.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754963|ref|ZP_05206997.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254762306|ref|ZP_05214150.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30254253|gb|AAP24667.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501077|gb|AAT29753.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177569|gb|AAT52945.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164711574|gb|EDR17122.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167511106|gb|EDR86494.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167529460|gb|EDR92211.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170126593|gb|EDS95478.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170667007|gb|EDT17770.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172081877|gb|EDT66946.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560373|gb|EDV14352.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227007430|gb|ACP17173.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229266529|gb|ACQ48166.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 463

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|229529485|ref|ZP_04418875.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
 gi|229333259|gb|EEN98745.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
          Length = 572

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I +    S + 
Sbjct: 424 TFTLYIPLQSRLKNIKQSTSSSQKI 448


>gi|196047143|ref|ZP_03114360.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196022013|gb|EDX60703.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 462

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   +    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---KQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPSEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|121535086|ref|ZP_01666903.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306336|gb|EAX47261.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 593

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 5/237 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            +E    ++ F+A+ SHEL+TPL AI GF+  +    +      T  +++  IH   + +
Sbjct: 358 LQEIQERQAEFVANASHELKTPLTAIKGFAATLLDGAIREPALAT--KFVTIIHDEAERM 415

Query: 302 LNLINEILDLSRIEAGRY--ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             L++++L L+ ++A     +       +  +    +  L  + + K + +         
Sbjct: 416 NRLVDDLLQLASLDARETGQQARLEPTDIYKVAAAVVEELSAQWRAKRLSVLLDAPARPL 475

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           +V A+   +RQV++NLL N++K+T  GG++ V   W +     + ++D+G GI   ++P 
Sbjct: 476 AVMANPDWLRQVLVNLLDNSIKYTPEGGKILVK-WWQASDKAVVMVQDSGIGIPAKDLPF 534

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +   A      G GLGL I + I+   GG+  + S+   G      LP  +
Sbjct: 535 IFDRFYRVDRARSRRAGGTGLGLAIVKHIIETLGGKIDVVSEPDAGTTFTFTLPLAK 591


>gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 763

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 132/240 (55%), Gaps = 2/240 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ +  +  K+ FLA++SHELRTPL +I+G+++V+    +G L+ E  +E +G + ++  
Sbjct: 518 EQVQHADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELSPE-VQETLGYMRQASL 576

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +L+  IN+IL+ SRIEAG+  +    + +  I++  +  +  +A+E+++ +   I P + 
Sbjct: 577 NLMRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIPPDIP 636

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + A+   + QV++NLLSNA+KF    G + ++V    G    I++KD+G GIA  +   
Sbjct: 637 QIAANIGRLEQVLINLLSNAIKFNRPQGWIEISVEPR-GAWLRINVKDSGVGIAPEDQER 695

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +          GVGLGL I + ++ + GG   + S   EG      LP   V  
Sbjct: 696 IFAEFQRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLPVINVEQ 755


>gi|30263182|ref|NP_845559.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47528547|ref|YP_019896.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186032|ref|YP_029284.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|165868690|ref|ZP_02213350.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167632195|ref|ZP_02390522.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167637220|ref|ZP_02395500.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170684831|ref|ZP_02876056.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170704948|ref|ZP_02895413.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650266|ref|ZP_02933267.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564692|ref|ZP_03017613.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227813953|ref|YP_002813962.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229601422|ref|YP_002867446.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254685789|ref|ZP_05149648.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254723196|ref|ZP_05184984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738259|ref|ZP_05195962.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742573|ref|ZP_05200258.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254752574|ref|ZP_05204610.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254761090|ref|ZP_05213114.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30257816|gb|AAP27045.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47503695|gb|AAT32371.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179959|gb|AAT55335.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164715416|gb|EDR20933.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167514727|gb|EDR90093.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167532493|gb|EDR95129.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129803|gb|EDS98665.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170671091|gb|EDT21829.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172084218|gb|EDT69277.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564009|gb|EDV17973.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227004608|gb|ACP14351.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229265830|gb|ACQ47467.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 458

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EKNI
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|253579764|ref|ZP_04857032.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848763|gb|EES76725.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 447

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 9/316 (2%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V  +   ++V + T  ++   ++ + L   L         +   + + +++      
Sbjct: 134 VLRVARTTDSLLVTMLTSFLLLGGLVCVILVIELFLVQKQTRKLIEPINRIDLEHPLEHV 193

Query: 220 ---EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E   L+  L+       +  +  +    A+  F A++SHEL+TPL +I G++E++  
Sbjct: 194 CYEELRPLLFRLDQQNRQIQKQLEDLKNAESARKEFTANVSHELKTPLMSISGYAELMMN 253

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +  +  +++ G I    + L NL+ +I+ LSR++    E     + + ++  + I
Sbjct: 254 ---GMVPPDKMQDFSGRIFHESERLSNLVADIIQLSRLDEKNGETMFEQVDIGELGEDVI 310

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             LQ RA +K I +    +P  + +      + ++  N+  NA+++T  GG V V VG  
Sbjct: 311 NNLQNRAAKKKINLEYTGEP--AQMQGVRHVLYEMFYNITDNAIRYTPDGGDVKVFVGKL 368

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                Y  ++DNG GI E E   +   F +   +      G GLGL I +     H  + 
Sbjct: 369 -NGKPYFRVEDNGIGIPESEQQRIFERFYRVDKSHSRETGGTGLGLSIVKHGAVLHHAKI 427

Query: 457 LIRSKLREGVEVIAIL 472
           L+ S+  +G ++  + 
Sbjct: 428 LLDSEPGKGTKMEILF 443


>gi|206601622|gb|EDZ38105.1| Putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 506

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 11/328 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              V V  S   I+ + +L  + + ++ + +      T  + +            D++  
Sbjct: 185 MMIVSVEFSAVGILLVLILLWAFSSLILSPVLRLIEGTKRISEGVFIDPVRVTGTDEMGD 244

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                  ++    ++  + +  KS F+   SHELRTPL +I GF  ++    +GPL  E 
Sbjct: 245 LARALNEMA----RKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPE- 299

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  +     HL+ L+N +LDL RIE+G+       + L+ ++       +  A++ 
Sbjct: 300 QQNGLAIVQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRQEAMAEQG 359

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           NI     +DP L   +  D   + Q++ NLL NA KFT  GG V + V         I +
Sbjct: 360 NITFRLILDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSR-KDCQLEIEV 418

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI +  +P +   F Q +       +G+GLGL I + I+ N  G+  +R     G
Sbjct: 419 RDTGIGITQESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRG 478

Query: 466 VEVIAILPNTRVLNF----IPEDNHEST 489
                 LP   V++      PE   ES+
Sbjct: 479 TVFRVTLPFQPVVSEDGSTSPETGKESS 506


>gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 905

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE     K  F++++SHELRTPL AI G   ++    +     +   + IG   R+  
Sbjct: 671 ERAE-AERIKDEFISTISHELRTPLTAINGSLALL-DAKVAMAAPDKQAQMIGIARRNTD 728

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-L 358
            LLNL+N ILDL ++ +G   L  S  +L  +V + + + Q  A   ++    +I    +
Sbjct: 729 RLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLAHNADVSFSLQIPSDCV 788

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V ADE+ + QV+ NL+SNA KF+     + V+V         +S+ D GPG+    + 
Sbjct: 789 IVVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTL-EDSIARVSVTDKGPGVPPEFLN 847

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F Q   +    + G GLGL I+++I+  HGG+    +    G      LP 
Sbjct: 848 RIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNPGGGCTFYFELPA 903


>gi|150017638|ref|YP_001309892.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904103|gb|ABR34936.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 523

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 11/275 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
               E+  L   LE    L +       +T K  E+   ++   L ++SHEL+TPLN I 
Sbjct: 226 RDITERKKLEKMLEEQNKLLEMDVTAEIKTNKIMEKTLKSQEELLVNISHELKTPLNVIS 285

Query: 269 GFSEVIELETMGP---LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
             ++++E+  M        +   +Y   I  +   L  LIN I+D S+IEAG +EL+   
Sbjct: 286 ATAQLLEMYYMDDSIINKKDILIKYFKSIKLNTYRLSKLINNIVDTSKIEAGFFELNLLN 345

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           ++++++V E ++ +    + K + I    +     +  D + + +++LNL+SNA KF+  
Sbjct: 346 VNIVNVVEEIVMSVTSFVKIKGLNIIFDTNTEEKIIACDPEKIERIMLNLISNATKFSND 405

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G + V V         IS+KDNG GI E ++  +   F Q   ++    +G G+GL + 
Sbjct: 406 NGEIFVKVK-DMNEWVEISVKDNGIGIEEKKMDIIFDRFEQADKSLSRNAEGTGIGLSLV 464

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           +SI   HGG   + S+  +G +    LP   V N 
Sbjct: 465 KSIALLHGGSINVESEYGKGSKFTVTLPAGAVANE 499


>gi|118587243|ref|ZP_01544671.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
 gi|118432385|gb|EAV39123.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
          Length = 630

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +     +  +E++G  H   Q ++++IN++L+L
Sbjct: 392 FVSNVSHELRTPLTSVNSYIETLQEGALT--QRKIAREFLGVAHDETQRMIHMINDLLEL 449

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--------DPSLSSVWA 363
           SR++ GR ++   A++    +   +    +  ++ +                     V  
Sbjct: 450 SRMDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEI 509

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     QV+ N+++NA+ ++  GG + + +  T      +SIKD+G GI + ++  V T 
Sbjct: 510 DSDKFMQVVDNVINNAINYSPDGGNIEIGINET-DDSIILSIKDHGLGIPKKDLENVFTR 568

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +    + G GLGL I++ ++    G+  + S +  G      LP 
Sbjct: 569 FYRVDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 619


>gi|296122574|ref|YP_003630352.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296014914|gb|ADG68153.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 758

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 162/368 (44%), Gaps = 27/368 (7%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           LL  LS     +  L   V      + V  +             +A         +  + 
Sbjct: 88  LLTLLSRPFGLDLYLKRPVRHMIDSIDVVQAVHPGSLPIPQGAQIALNRPWPH-SYEPLV 146

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             +  S  ++L            LE+A +      + A+  N AKS FLA MSHE+RTPL
Sbjct: 147 IQISPSQFRLLDFHTLLLAQSRLLELANNEVRRQMEVADRANRAKSDFLAHMSHEIRTPL 206

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            AILGF+E I+ E    ++   ++  +  I R+G+HLL+LIN+ LDLS+IEAGR  + + 
Sbjct: 207 TAILGFAESIQKE---EVSAAEHRSAVDTILRNGEHLLSLINDTLDLSKIEAGRLTIEQL 263

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
               + I  E + + + R + + +++  K +  L   + +D   +RQ+++NL+ NAVKFT
Sbjct: 264 ECRPLVIAAEVLQLFRSRLKSQRVQLELKGEGLLPEMIVSDPTRLRQILMNLVGNAVKFT 323

Query: 384 AIGG-RVHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTS 423
             G  R+   V                            + ++D+G G+ E  +  + T 
Sbjct: 324 ESGIVRIVARVRKPPSNPVTGGSEKSANHGHDNAPARLVLEVQDSGIGMTEALLEKLFTP 383

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFI 481
           F Q   +      G GLGL I++ +     G   +RS+  +G      LP   ++  N++
Sbjct: 384 FTQAETSTVRRFGGTGLGLSISRQLARLLEGDLTVRSEFGKGSVFTLELPLIGSKEENWL 443

Query: 482 PEDNHEST 489
           P +  E T
Sbjct: 444 PLEQLEKT 451


>gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131]
 gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 146/334 (43%), Gaps = 6/334 (1%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   L     L         +      +   D+    +   A    T I    +    +
Sbjct: 220 FAAARLFLQDALPGSVYYGPEANLRFADLAGFDLEAVKLRGEAGDVLTCIGERWYSITAQ 279

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +   + K   I       + +   R++AE    AK+ FLA+MSHE+RTP+++I G +E+
Sbjct: 280 EMLDVSRKFVGIVVTFHDVTEARRAREQAEALARAKTDFLATMSHEIRTPIHSIGGVTEL 339

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   +   +    + Y+  I RS + L ++++++LD +RIE+G  EL +   S+  I+ 
Sbjct: 340 LKQSELASRD----RGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILD 395

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   M+Q   + K           L  V  D   +RQ+++NL SNAVKFT   G V +  
Sbjct: 396 DVARMMQPLVRRKPQLRIVIERTDLPPVLGDAGKLRQILINLTSNAVKFTPE-GTVVIGA 454

Query: 394 GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              +G  ++  ++ D GPGIA  ++  +   + Q   +I     G GLGL I + +  + 
Sbjct: 455 ERLAGGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHL 514

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GG+  +RS    G      +      +  P D  
Sbjct: 515 GGRLDVRSTPGFGSRFTLEVALAPGGSEPPGDAT 548


>gi|213969639|ref|ZP_03397775.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|213925735|gb|EEB59294.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1161

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 167/356 (46%), Gaps = 15/356 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G   P +   Y    L   L +  +       A+ L +  V   L  Q+  + H+L ++ 
Sbjct: 594 GKMLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAF 653

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRA 242
                T   F   + + +  +    L  Q E +         I   E       + ++ +
Sbjct: 654 LKAFLTVCVFAGVLAWWVVLTRESRLVAQEESERQTSLLIQEIDAHEKTDQALQKAKEAS 713

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKSR++  +SHELRTPLN+ILGF+++++ +T  P     +++ +  I RS  HLL
Sbjct: 714 EAANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLL 770

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           +LIN +LD+++IEAG+ +L  + I   + + +   M    AQEKN+    +++  +   V
Sbjct: 771 SLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFAGTAQEKNLGFRLELEGRMPMVV 830

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             DEK +RQ+++NLL NAV FT   G V + V +         I D+G GIA  +I  + 
Sbjct: 831 RGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDSGIGIAPEQIERIF 888

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             F +G         GVGLGL I + + A  GG   + S   EG      L  + V
Sbjct: 889 QPFERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 942


>gi|295136279|ref|YP_003586955.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
 gi|294984294|gb|ADF54759.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
          Length = 815

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 138/275 (50%), Gaps = 11/275 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +   +  +   +E +  AE     + + +A+++H+LR+PLN ++G+SE++    +G  
Sbjct: 291 RDVRRSQQYRIELEEAKNFAETLLKRREQLMAAITHDLRSPLNTVIGYSELMNKTQLGN- 349

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                + Y+  I++S   +L+L+N++LDLS++EAG+  +     +   ++ + +      
Sbjct: 350 ---KQRHYLSQINKSSDFILHLVNDLLDLSKLEAGKMLVENLPFNPKKLISDTVQNNIPA 406

Query: 343 AQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSG 398
              K++E+   I + +     +D   ++Q+I NL++NA KFT  G  +    +       
Sbjct: 407 NLNKDLEVIIDISEEADGQYSSDPFRIKQIIANLVTNACKFTEKGNIIVSAEIETKTKDI 466

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +   I +KD G GI++ +   +   F Q +  I+    G GLGL I +S+ +   G+  +
Sbjct: 467 QYLIIKVKDTGIGISKEKQEVIFEEFSQENSGIEKKYGGTGLGLTITKSLTSLLKGEISL 526

Query: 459 RSKLREGVEVIAILPNTRVLN---FIPEDNHESTQ 490
           +S+  +G E    +P  +  N    +PE+ H  T+
Sbjct: 527 QSEQGKGSEFTITIPVQKSKNQKKPVPENPHPPTE 561


>gi|223043560|ref|ZP_03613605.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
 gi|222443048|gb|EEE49148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
          Length = 565

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + E+  + ++L ++    I  LQ +A  KNIEI  +I+  +  +
Sbjct: 395 ESLVMDLLDLSHIEQ-QTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ ++    +V V V    G+   + I+D G GI+  +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSLEDNKVIVRVFR-EGKKVNLEIQDFGIGISAKDQKHIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  I S+L EG       
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|228960940|ref|ZP_04122573.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798836|gb|EEM45816.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 484

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ V V  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|83649318|ref|YP_437753.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83637361|gb|ABC33328.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 599

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/259 (33%), Positives = 144/259 (55%), Gaps = 5/259 (1%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L+   + AK  +D  R+RAE  + AKSRFL++MSHELRTPLNA++GF++++++E      
Sbjct: 198 LMYLAKQAKVEADFHRRRAEANSDAKSRFLSNMSHELRTPLNAVMGFAQLMQME--SRNL 255

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +    + I +I+++ +HLL+LIN+I+DLS+IE+G+  +S    S+  +V E + M++  A
Sbjct: 256 SREQMQNIDEIYKASEHLLSLINDIMDLSKIESGQLSISIEPCSVQSLVNESVSMIRSMA 315

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402
              NI +++        +  D   M QV+ N L+NA+K+   GG V V +   S      
Sbjct: 316 MMNNISVYEPEVRLDYLIKVDRTRMVQVLTNFLTNAIKYNRKGGWVKVELEHESRSGMLC 375

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +S+ DNG GI + +   V   F +   A   A +G G+GL ++Q ++    GQ   +SK 
Sbjct: 376 LSVADNGIGIHKKDHHKVFKPFERL--AQDMAIEGTGIGLALSQQLVLLMNGQIGFKSKE 433

Query: 463 REGVEVIAILPNTRVLNFI 481
            +G       P   V+   
Sbjct: 434 GQGSLFWVKFPILDVVKAQ 452


>gi|65320510|ref|ZP_00393469.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 448

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + +  I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIXFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EKNI
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 935

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  ++  ++ R+ A+  N AK++FLA+MSHE+RTPL  +LG  E++    +    +
Sbjct: 435 ISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL----D 490

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++Y+  I  S   LL LI ++LD+S+IEAG+  L  S  S  D+VRE +      A+
Sbjct: 491 AQQRDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAAR 550

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            K ++++  +DP L   +  D   +RQ++ NLLSNAVKFT   GRV +     +  G+  
Sbjct: 551 SKGLQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFT-DCGRVVLRARLLNRDGERS 609

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIAE + P +   F Q          G GLGLPI Q +     GQ  + 
Sbjct: 610 CLLWQVSDTGKGIAEQDQPFIFDPFYQTEG-HSQVIPGTGLGLPICQRLTQLMNGQLRLV 668

Query: 460 SKLREGVEVIAILPNT 475
           S+L  G      LP  
Sbjct: 669 SELGLGSSFSLTLPLE 684


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 12/279 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +   + +   +  +  I+E + A+    + +  AE  N A+S FLA++SHE+RTP+NAI+
Sbjct: 271 RDANERIIGVSTIERDISERKFAERELQKAKAAAERANRARSEFLANVSHEIRTPMNAII 330

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +++   E +     E  +EY+   + S   LL+L+N+ILD S+IEAG++ +  S  +L
Sbjct: 331 GMTKLTLAEDL----PEAVREYVETANSSAHTLLSLLNDILDFSKIEAGKFTIDRSEFNL 386

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              +   +  L  RA  K +E+    DP +   +  D   +RQ+I NL+SNAVKFT   G
Sbjct: 387 RQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLRQIITNLVSNAVKFTER-G 445

Query: 388 RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V ++V              +I D G GI   +   +   F Q   +      G GLGL 
Sbjct: 446 EVLLSVKLLRRFPREVRIRFTISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLGLT 505

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNF 480
           I   ++   GG+  + S+   G      L  P TR    
Sbjct: 506 ICHELLELMGGRLELNSEPGVGSRFSFALLFPRTRTAES 544


>gi|296160729|ref|ZP_06843543.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295889032|gb|EFG68836.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 651

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 170/452 (37%), Gaps = 23/452 (5%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
               P +   D +++  L+ +             +LVA         P+F        A 
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYWPNIPSPPLFIACFGFYAAA 60

Query: 83  --YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
              +  L +  +     +     +++   L    +       +         +P+     
Sbjct: 61  NCGSLALWICNRRYPELVSP-RGWIYLHALRGVLLYSAPGIAVWFAF----QSPQTDLPL 115

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALSF 199
               +L+ L+     +       F +  P ++         +       LA +LA     
Sbjct: 116 LHTVMLVTLAAGVFMSNGFDLLNFSTAIPFLLFPSIVMHFGTHTFDRTILAIVLAFFFCA 175

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                    K   +++  + ++  L              ++ AEE +LAK+RF A+ SH+
Sbjct: 176 INVYALSYRKLFQQVVQARVDQQYLAES-------LAAQKQVAEEASLAKTRFFAAASHD 228

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LR PL+AI   +  +      P  +    E+   I  + + L  L N++LDL+R+E+G  
Sbjct: 229 LRQPLHAIGLLAASLNDAAATPAQHAKTAEH---IVYNVEALNQLFNQVLDLARLESGVT 285

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++      L ++        + +A  K + +     P+   V  D   + +V+ NLLSNA
Sbjct: 286 QVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTTMVVHDDPVLLERVLSNLLSNA 343

Query: 380 VKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           V++T   G + + V       G YI ++D+G GI   E   +   F Q +   + A QG 
Sbjct: 344 VRYTEE-GAIWLGVRRAGRPAGGYIEVRDSGIGIPVEEQERIFEEFYQVANPQRDARQGH 402

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGLP  + ++   GG+  +RS    G     
Sbjct: 403 GLGLPTVKRLVEMLGGKLQLRSAPGRGSAFRF 434


>gi|262381423|ref|ZP_06074561.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296600|gb|EEY84530.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 533

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 301 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 356

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+IE+G+ E   + + L +I         LR     +++  + D 
Sbjct: 357 SNEFLLQLIGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVA-PGVKVIFESDG 415

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 416 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 473

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 474 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 526


>gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 739

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 4/242 (1%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLN-AILGFSEVIELETMGPLNNETYKEYI 291
              +  +  AE+ N AK  FLA +SHELRTPL   I G S +IE      +++E   E++
Sbjct: 362 REMETAKLTAEKANEAKDNFLAVLSHELRTPLTPVIAGASYLIENR--SAISDEEMLEHL 419

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I R+ Q    LI+++LDL+RI  G+  L   A+ +   +R+   +LQ   Q K + + 
Sbjct: 420 HTIRRNAQLEAQLIDDLLDLTRISRGKMILHPEAVDIHAALRDVGAILQEEIQRKQLALS 479

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +  +    W D   +RQV  NL++NA+KFT  GGR+ V     S     + + D+G G
Sbjct: 480 YDLQATGYWSWVDPTRIRQVFWNLINNAIKFTPEGGRIKVRSANPSPTCLRVDVSDSGLG 539

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIA 470
           IA  +   +  +F QG +       G+GLGL I + ++    G   + S+   +G     
Sbjct: 540 IAPEQQQRIFGAFEQGEVDTTRKFGGLGLGLAITRHLVEQQNGSISVTSEGKGKGACFTV 599

Query: 471 IL 472
            L
Sbjct: 600 TL 601


>gi|166713061|ref|ZP_02244268.1| putative two-component system sensor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 295

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  ++ + +     L  ELE          +  D+  ++  + +  KSRFL+ MSHE R
Sbjct: 15  DTTAELENLRQHNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFR 74

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +
Sbjct: 75  TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 133

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S     L+D+      M +         +     P L  ++ D+K + Q++ N +SNA+K
Sbjct: 134 SPGWFDLMDLFAALRGMFRPLTDTGTTTLIFDDPPVLPMLYTDDKKLAQILRNFISNALK 193

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V V             ++D G GI       +   F Q    ++    G GLG
Sbjct: 194 FTPQ-GHVRVFAQLEGDTHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLG 252

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           L I +      GG+  I S + +G E   +LP T    
Sbjct: 253 LSICKRFAELLGGRVGINSVVGQGSEFYVVLPVTLAAE 290


>gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 957

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 136/242 (56%), Gaps = 7/242 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G +E++    +    +E  + Y+  +  SG  LL++IN I
Sbjct: 586 KSEFLAAMSHEIRTPMNTVIGMTELLLETPL----SEEQQRYVRSLRSSGTALLDVINAI 641

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDL+RIE+GR EL+E    L +++RE   ++   A +K +E+  +++P+    +  D   
Sbjct: 642 LDLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAPR 701

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQ+++NL+ NA+KFT + G+V V V          I ++D+G GI +  I T+   F Q
Sbjct: 702 LRQILINLVGNAIKFTEV-GQVCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFAQ 760

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              ++     G GLGL I+Q +    GG+  ++S++++G      +P         E   
Sbjct: 761 ADSSMARRFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQIGEEPAQEVVT 820

Query: 487 ES 488
           E+
Sbjct: 821 ET 822


>gi|229182984|ref|ZP_04310216.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
 gi|228600441|gb|EEK58029.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
          Length = 463

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   +    Y+  I     ++ NL+ +
Sbjct: 235 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---KQRLRYLSIIKDESDYITNLVQD 291

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 292 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 350

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 351 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPSEDLPHIFDRFYRV 409

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 410 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 455


>gi|187778664|ref|ZP_02995137.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
 gi|187772289|gb|EDU36091.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N +  + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYSKDINPSIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLALNNEYFDVVWETENIVNSITNYANSKNINLIFDTTKEEEK 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGAGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++    +G G+GL + + I+   GG+  + S L +G      +
Sbjct: 619 FNRFAQVNSSLSRNAEGTGIGLSLVKKIVDLMGGEIKVNSTLGKGTTFTVKI 670


>gi|168463198|ref|ZP_02697129.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195634353|gb|EDX52705.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 920

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|86131620|ref|ZP_01050218.1| two-component system sensor histidine kinase/response regulator
           [Dokdonia donghaensis MED134]
 gi|85818065|gb|EAQ39233.1| two-component system sensor histidine kinase/response regulator
           [Dokdonia donghaensis MED134]
          Length = 741

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 163/313 (52%), Gaps = 15/313 (4%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           ++       ++   L  +++  + +   L  S  K  + +A+ ++L+   +         
Sbjct: 301 LIEKDRNSKAMRLTLVLSIALCSILA-LLTLSLYKNNNLRAKANELL---QAKNVELVIA 356

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R  AE+ +  K++FL++++HELRTP+ A+ G + ++  E       +  K+++  +  SG
Sbjct: 357 RDNAEKASTVKAQFLSTITHELRTPMYAVTGLTHLLLSE----NPTDEQKKHLDSLKFSG 412

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           ++LL+LIN ILDL+++EA + E+ E++ +L   + + +  L   A++K  ++  +ID  +
Sbjct: 413 EYLLSLINNILDLNKLEANKVEVEETSFNLKKRIEDVLFALGKSARDKGNKLHLEIDEDI 472

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIA 413
              V  D   + Q+++NL+ NA+KFT   G V + V   +        +  I+DNG GI+
Sbjct: 473 PLEVLGDPLMISQILINLVGNAIKFT-RDGDVWIRVQKIAQGEADIRLHFEIEDNGEGIS 531

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +  T+  +F QGS+AI     G GLGL I ++++     +  + S L +G      L 
Sbjct: 532 KKKQKTIFQNFTQGSVAINRKFGGTGLGLSIVKNLLDLLNSKISLDSTLGKGTTFKFDL- 590

Query: 474 NTRVLNFIPEDNH 486
              ++  +P +++
Sbjct: 591 KYNLMQALPGEDN 603


>gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 735

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +   +   + ++ AE  + AKS F+A+MSHE+RTP+N I+G   +  L++     +
Sbjct: 467 ISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMIHLARLKS----PD 522

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+     S +HLL ++N++LDL+++EAG+  L     +L   +R  I  +Q  A 
Sbjct: 523 PALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPMQAAAG 582

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           EK + +   + P +  +V  D   +RQV+ N++ NAVKFT   G V + V          
Sbjct: 583 EKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGT-GHVDIRVELDDDAAGDE 641

Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              R    +++D G GI    +  +  SF Q   +      G GLGLPI++ ++   GG 
Sbjct: 642 AVVRRLRFTVRDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVEFMGGT 701

Query: 456 FLIRSKLREGVEVIAI 471
             + S+  EG      
Sbjct: 702 IDVASREGEGSTFTFT 717


>gi|228954943|ref|ZP_04116961.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804764|gb|EEM51365.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 484

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASTLYVTADCEKINRVISNLVHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  +          D   + Q+I NL++NA+K T   G + +             
Sbjct: 497 G-GVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDNQLRFY 554

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 555 VRDTGIGIDKDKLKDVFGRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 611 GSEFSFILP 619


>gi|294495905|ref|YP_003542398.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666904|gb|ADE36753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 554

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 135/282 (47%), Gaps = 2/282 (0%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   +     + + + + ++++L    +   +  E      ++    +  +  +  KS F
Sbjct: 274 VMGFIQLSIPLNHEVSEKSLQVLEHVGKHIGIAIENAQLFEMTQRAYEDLKHLDKLKSEF 333

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+++HEL+TPL +I GFS++++   +G LN +  K  +  + R+   L  LI+ +L +S
Sbjct: 334 LANLTHELKTPLISIKGFSDLLDKGRLGELNEDQKKANLAVV-RNADRLKRLIDSLLYMS 392

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
             + G+Y+     + + +I+ + +  +++  + K+++I   I         D   +  V 
Sbjct: 393 MEKEGKYQYQFEELDVGEIITDAMDKMKVHTEGKDVDIGIDIQNKSYLTCGDRDRLTNVF 452

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LN+L NA KFT   GR+ +T+         I IKDNG GI + +IP +   F Q   +  
Sbjct: 453 LNILDNASKFTKGSGRIKITLKEEEE-YIRIKIKDNGIGIPKEKIPRIFDMFYQIDGSTT 511

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               GVG+GL I + ++  H G    RS    G  V   LP 
Sbjct: 512 RIYNGVGMGLYICKKVIDIHNGSIWARSMEGLGTTVHVKLPK 553


>gi|197263365|ref|ZP_03163439.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197241620|gb|EDY24240.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 920

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
          Length = 774

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 98/269 (36%), Positives = 150/269 (55%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L      +   +++ +   A+LE         + +AE  + AK+ FLA+MSHELRTPL
Sbjct: 498 RRLTDIIHALSETRSDAERKAAQLEELNHSFRIEKNKAEAASRAKTTFLANMSHELRTPL 557

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFS+++  + +GP+ +E Y  Y  DIH SG+ LL LI++ILD+ +IE GR  +   
Sbjct: 558 NAILGFSDIMRQQMLGPIGSEKYTGYAHDIHESGEFLLQLIDDILDMQKIETGRTTMLRR 617

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              L + V E   M++     + I++  +    L +++AD + + Q+++NL+SNAVKF+ 
Sbjct: 618 IFDLTEAVAESARMIEASVARRQIDLVVEQPEKL-NIYADRRAVTQILMNLMSNAVKFSD 676

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG V V+V         +SI D G GI++  +  +   F Q        ++G GLGL I
Sbjct: 677 AGGEVRVSVK-ERSGAVLLSITDRGEGISQCNLAKIGRPFEQTESEWTRTKKGTGLGLAI 735

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           A+S+   HGG+F I S L EG  V   LP
Sbjct: 736 ARSLTELHGGRFRIASTLGEGTIVAIRLP 764


>gi|298694775|gb|ADI97997.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 583

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCAENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|168822261|ref|ZP_02834261.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341298|gb|EDZ28062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 920

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATSPLSTRLPAQRLDELDSIAGAFNQLLDALQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQEGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|301054746|ref|YP_003792957.1| histidine kinase [Bacillus anthracis CI]
 gi|300376915|gb|ADK05819.1| histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 549

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 138/327 (42%), Gaps = 34/327 (10%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALS---FFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           +    +    +   +L    A  L    F T +     + ++     +++   L  ELE 
Sbjct: 84  ILLTGLGDRDLDCAALEAGAADYLVKGQFSTQLLERSIRYSMARKRIESQLRILNEELEA 143

Query: 231 ------------------AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                             A+    + +  AE  + AKS FLA MSHE+RTP+N ++G +E
Sbjct: 144 RVQERTAKLRDEIDARTLAEQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGMAE 203

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +               EY+G I  SG  LL +IN+IL+LS+IEAG+ EL      L   +
Sbjct: 204 LALR----ASREPRILEYLGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDL 259

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + +  L    Q K++ +   +D  +   +  D   +RQVI NL+ NAVK+T   G + +
Sbjct: 260 EDTLATLAPSVQAKSLRLVHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHK-GLITL 318

Query: 392 TVGWTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           +V                  ++D+G GI + ++  +  SF Q +        G GLGL I
Sbjct: 319 SVRLADEAADQSGGMRLLFQVRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAI 378

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++  +    G+    S+   G      
Sbjct: 379 SRHYVELMDGRIWAESEPGTGSIFFFT 405


>gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 801

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 24/339 (7%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
             + +    L        + +V A     +       I   GM     +           
Sbjct: 431 GQTTVFEHELRAVTGAVLWVMVSA---SPLYDGSGRYIGALGMFTDITARKKIEEELAES 487

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+      +AE ++   +L +      E   R  E +  KS FL+++SHELRTPL +ILG
Sbjct: 488 SH----RLEAEVEERTRDLRLQALELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILG 543

Query: 270 FSEVIELETMG---------PLNNETYKEY---IGDIHRSGQHLLNLINEILDLSRIEAG 317
           F+++I  +            P      +     +  ++   + L  LIN++LDL+RIE+G
Sbjct: 544 FAKLIGRDFNDQFLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESG 603

Query: 318 RYELSESAISLIDIVRECIIMLQ-LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
                ++  + ++++ +    ++ L +Q   I    +++  +  V  D   + QV+ NLL
Sbjct: 604 NMHWRDTRFNPLEVLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLL 663

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK--SA 434
            NAVKFT   G V +TV    G    ++I D+G GI  GE+  +   F Q   +      
Sbjct: 664 QNAVKFTRE-GTVRMTVRR-EGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGET 721

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +G GLGL I + I+ ++GG+    S+L +G     +LP
Sbjct: 722 TKGTGLGLAICRQIVRHYGGRIWAESQLGQGSVFYVLLP 760


>gi|171320502|ref|ZP_02909531.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171094265|gb|EDT39343.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 734

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L  E R      N AK +FLA + HELR PL  I  
Sbjct: 316 SAVEVTEHVAAREKLVAANAERDRLLGELRD----ANQAKDQFLAVLGHELRNPLTPISL 371

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     I  I R   H++ LI+++LD+SRI  G+  L + A+ L 
Sbjct: 372 ALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKEALRLA 426

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +    DP  +    D   + QV+ NLL+NA K+T  GG +
Sbjct: 427 DIVDRAVEVASPLLEQRRHRLHVDADPD-ACCHGDPVRLSQVVANLLTNAAKYTMPGGDI 485

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V     +     I + DNG GI    + ++   F +     K A  G+G+GL + +S++
Sbjct: 486 TVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGLALVRSLV 545

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476
             HGG     S     G      LP  R
Sbjct: 546 NLHGGTVRADSAGPGCGSTFTIALPEYR 573


>gi|256840816|ref|ZP_05546324.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738088|gb|EEU51414.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 555

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 323 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 378

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+IE+G+ E   + + L +I         LR     +++  + D 
Sbjct: 379 SNEFLLQLIGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVA-PGVKVIFESDG 437

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 438 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 495

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 496 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 548


>gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
          Length = 511

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ +I GFSE +        + +    ++  I++    L  
Sbjct: 284 RLEQIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLISFLEIIYKESNRLQM 341

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L+LS+IE   + ++   + L D++     +   R  EKN+     I+  +  V  
Sbjct: 342 LIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIERDV-QVMG 400

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q++ NL++NA+ ++     V + +      G  I I+D G GI + EI  V   
Sbjct: 401 DANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGI-IEIEDQGIGIEKHEIARVFER 459

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL I + ++  H G+  + S++  G ++I ++P 
Sbjct: 460 FYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGIGTKMIVMIPK 510


>gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2]
 gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 406

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R +AEE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 152 LCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 211

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDL+ +EA   + +   I LIDI
Sbjct: 212 KLI----TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDI 267

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 268 CLQLEQQFCHK-TQNGVKLILDDVDADMYTSGDWNRIIQIISNLLSNATKFTPK-GEIHF 325

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    I T+   FG+         QG GLGL + + ++  
Sbjct: 326 GY-REKEDFVEFYVKDSGIGIPAARIATIFRRFGKV----NDFVQGTGLGLTLCRMLVEK 380

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 381 MGGRIWLRSQEGQGSRFYFTLPLIR 405


>gi|107102594|ref|ZP_01366512.1| hypothetical protein PaerPA_01003658 [Pseudomonas aeruginosa PACS2]
          Length = 705

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 175/469 (37%), Gaps = 32/469 (6%)

Query: 22  HLGLEYPSKMD--FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT 79
            +            D   +    + L   SP   +  LLVA +                 
Sbjct: 3   RIPAPDRPGDADVVDEAPLRQAADGLRSPSPSSLVLGLLVACL----------------- 45

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
           + V     +   ++     +  E  +     L   +  G+ + +      G         
Sbjct: 46  VCVGCLGWNTVLQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNY 105

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
            +S  +    +   L           +       L+     +    D+++          
Sbjct: 106 LESLRMTREQARGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIH 165

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                Y   +  V  L         I E E       E  ++A+E N AKS FLA+MSHE
Sbjct: 166 HWVTPYRDRQGRVLGLMNGWID---ITERERLARQLREAMRQADEANRAKSVFLATMSHE 222

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NA++G  E++          +  +  +   + +   L  LI +ILD+++IE+G  
Sbjct: 223 IRTPMNAVIGILELVLQRLA---PEQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHL 279

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L+   + L  +V     M +  A++K + +  ++D +    V  D    +QV+ NL+SN
Sbjct: 280 TLTPERVRLRHVVESVRRMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSN 339

Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT   G+V + +   S         + ++D+G GIA  +   +   F Q +      
Sbjct: 340 AIKFTER-GQVTIRLQERSLDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-V 397

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           + G GLGL I + ++   GG   + S+  +G  V   L   +    +PE
Sbjct: 398 QGGTGLGLAICRKLVDLMGGDVEMHSEPGKGTRVSLDLLLRQCGPKMPE 446


>gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1026

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            +     K+ F++ +SHELRTPL AI GF  ++        + +  K  I     +   L+
Sbjct: 794  QAIEQIKNEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKS-QKAKWMIQQALTNSDRLV 852

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
             L+N+ILDL R+ +GR +L +      D+++  +  +Q  A    I I     P+ + VW
Sbjct: 853  RLVNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLT--PTTACVW 910

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            A    + Q ++NLLSNA+KF+     + ++    S       ++D G GI   ++ T+  
Sbjct: 911  ASPDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSD-WVLFKVQDQGRGIPANKLETIFE 969

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F Q  I+   A+ G GLGL I QSI+  H G     S L EG      LP +
Sbjct: 970  RFQQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLPIS 1022


>gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208]
          Length = 459

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVSLEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTGKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAE--VNYTGDAELLYQVWSNLLTNAIKFTPPGGNIQIHL-YEEGTNVFVEVRDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGISKSDMAKIFERFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|296388461|ref|ZP_06877936.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 741

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 10/268 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A+E N AKS FLA+MSHE+RTP+NA++G  E++          
Sbjct: 224 ITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLA---PE 280

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   + +   L  LI +ILD+++IE+G   L+   + L  +V     M +  A+
Sbjct: 281 QRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLAR 340

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D +    V  D    +QV+ NL+SNA+KFT   G+V + +   S      
Sbjct: 341 QKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGRA 399

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 400 IVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S+  +G  V   L   +    +PE + +
Sbjct: 459 SEPGKGTRVSLDLLLRQCGPKMPESSQD 486


>gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 631

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 222 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 281

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L   ++ L + VRE +  
Sbjct: 282 EEGHTTYKG---LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNT 338

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V++     
Sbjct: 339 QELAAEGKDQILKLHVPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIER-DD 397

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 398 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 457

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 458 TSGGRGKGATFTVRLP 473


>gi|299148168|ref|ZP_07041230.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298512929|gb|EFI36816.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1365

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 777  FFVHIIPMWYQTWWAKTLFIFFSLGLLVFVIYFFIARAKMKMQVRIEQIE---------- 826

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 827  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 874

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + +++ +++++   + +  AQ++
Sbjct: 875  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKR 932

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 933  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 991

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 992  DSGIGMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 1047

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1048 EFKVTLPA 1055


>gi|260171984|ref|ZP_05758396.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315920296|ref|ZP_07916536.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313694171|gb|EFS31006.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1365

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 777  FFVHIIPMWYQTWWAKTLFIFFSLGLLVFVIYFFIARAKMKMQVRIEQIE---------- 826

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 827  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 874

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + +++ +++++   + +  AQ++
Sbjct: 875  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKR 932

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 933  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 991

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 992  DSGIGMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 1047

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1048 EFKVTLPA 1055


>gi|241765735|ref|ZP_04763681.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241364395|gb|EER59518.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1156

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 158/327 (48%), Gaps = 9/327 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L+++      + + V + +    +    Q + +  +   +L  ++A   +++  ++    
Sbjct: 584 LAVTVSLWAAMAFIVGVVYVQESLDTPAQFLRTPFLKVFALLALMAAVSAWWVVLSTDSR 643

Query: 209 KSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           +        Q +     I   +   +   + +  A   + AK+R +A M+HELR+PLN+I
Sbjct: 644 RMAQDESERQTQLLLQEIEAHKRTDAELQKAKDLAVAASQAKTRHVAGMTHELRSPLNSI 703

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG+++++      P  +   ++ +  I  SGQH+  LI+  LDL+RIEAGR  L  + + 
Sbjct: 704 LGYTQILLKN---PQTDGWLRDTLSTIQHSGQHMHALIDGSLDLARIEAGRLRLEPTPLP 760

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
           L +++ +   ML+  A+ K +    ++  +    + AD K +RQ+++NLL+NAV+FT  G
Sbjct: 761 LAELLEDVEGMLRPLAETKGLRFAVQVVGAAPAWIRADAKRLRQILINLLTNAVRFTDQG 820

Query: 387 GRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
               V + W   +    I + D G GIA  +   +   F +GS   +++E G GLGL I 
Sbjct: 821 ---EVRLRWDFSQHVSRIEVIDTGIGIAPLDQERIFLPFERGSAGRRASEVGTGLGLTIT 877

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
             +    GG+  +RS    G      L
Sbjct: 878 HLLTQLMGGELSLRSAPGRGSTFTVRL 904


>gi|228899335|ref|ZP_04063598.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
 gi|228860366|gb|EEN04763.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
          Length = 464

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 235 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 291

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L++IE   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 292 LFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 350

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 351 FEQVIVNILNNAYRHSKEHSHINISIT-DEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 409

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 410 DKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455


>gi|229112136|ref|ZP_04241679.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296505137|ref|YP_003666837.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|228671459|gb|EEL26760.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296326189|gb|ADH09117.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 484

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  ++    
Sbjct: 347 LSKEGIEVNLQLHTSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SNNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|119470180|ref|ZP_01612946.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
 gi|119446601|gb|EAW27875.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
          Length = 602

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   +  +        +AEE +  KS+FL+ MSHE+RTP++A++G  E++    + P   
Sbjct: 221 ITISKQREFELQAQTLKAEEASQTKSKFLSVMSHEIRTPIHAVMGMIELLLDTELTP--- 277

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +   + S + L  LI ++LD S+IE+G     +    +  +    +    +  +
Sbjct: 278 -EQQQLVNYANSSTEILYGLITDVLDFSKIESGTVSCLKKPFDIKLLTENIVGQFNIIEK 336

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +I     ID S+   V  D+  + QV+ N++SNA K+T   G++++ V          
Sbjct: 337 SDDILFTTHIDESIPQYVVGDQYRLGQVLFNIMSNAFKYT-THGQINLNV-VLQNERLVF 394

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD+G GIA+  +  +   F Q + +I    +GVGLGL I+++++   GG+  + ++L 
Sbjct: 395 EVKDSGIGIAKKHLDLIFKPFSQVNDSINRKSEGVGLGLSISKNLLGIMGGEITVDTQLG 454

Query: 464 EGVEVIAILPNTRV 477
            G      +P    
Sbjct: 455 LGSTFTISIPFEEA 468


>gi|110803159|ref|YP_698812.1| sensor histidine kinase/response regulator [Clostridium perfringens
            SM101]
 gi|110683660|gb|ABG87030.1| sensor histidine kinase/response regulator [Clostridium perfringens
            SM101]
          Length = 1086

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIE----LETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            K+ +  ++SHELRTPLN IL   ++I+     E +G    E   +Y   +  +  HLL +
Sbjct: 854  KNDYFVNLSHELRTPLNVILATVQLIKLKNKKECLGKYQVE---DYTNTLRNNADHLLKI 910

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            IN+I+D S+IE+G Y+L+     ++ +V +  + L+   +E N++I    +     V  D
Sbjct: 911  INDIIDSSKIESGAYKLNIEKHDIVSLVEDTALSLKAYIEENNLDIIIDPEIEELDVECD 970

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            +  + + ++NLLSNA+K+T   G + V +         I+IKD G GI++ +   +   F
Sbjct: 971  KNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEIAIKDTGVGISKEQQKIIFDRF 1030

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             Q     K   +  G+GL + +SI+  H G+  + S+L +G   I  LP  +
Sbjct: 1031 VQADSIAKKQYRSSGIGLTLVKSIIELHHGKIKVESELNKGSTFIITLPIRQ 1082


>gi|30022741|ref|NP_834372.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229129951|ref|ZP_04258917.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
 gi|29898300|gb|AAP11573.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228653642|gb|EEL09514.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
          Length = 484

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  ++    
Sbjct: 347 LSKEGIEVNLQLHTSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SNNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|302874875|ref|YP_003843508.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690508|ref|ZP_07632954.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577732|gb|ADL51744.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 894

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 135/265 (50%), Gaps = 6/265 (2%)

Query: 221 KDDLIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--- 275
            + +I  +++A  +++E   + + EE    +    +++SHEL+TPLN I   ++++E   
Sbjct: 605 NNQVIEVIQIAIDITEEVTAKNKMEETLRMQEEIFSNISHELKTPLNVIFSTNQLMELYF 664

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                  N E   + I  I ++      LIN I+D+S+I++G +EL+ S  ++++I  + 
Sbjct: 665 KNNCIEGNKEKVSKSINIIKQNCYRFTKLINNIVDVSKIDSGFFELNLSNENIVNITEDI 724

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  +    + K + I    +    ++  D   + ++ILNL+SNA+KF+   G++ V V +
Sbjct: 725 VQSISEYIEGKGLSIIFDTNVEEKTIACDPDKIERIILNLVSNAIKFSNPEGQILVNV-F 783

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G    I ++D G GI    +  +   F Q   ++    +G G+GL + +SI+  HGG 
Sbjct: 784 DKGEFVEIIVEDTGIGIESKHLNNIFERFHQVDKSLSRNAEGSGIGLSLVKSIVEMHGGS 843

Query: 456 FLIRSKLREGVEVIAILPNTRVLNF 480
             ++S++ +G     +LP   V   
Sbjct: 844 ISVKSQVNKGSTFKVVLPGVIVEET 868


>gi|83647612|ref|YP_436047.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635655|gb|ABC31622.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 652

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 26/309 (8%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKR 241
            +   +L G     L      + HL ++    L   + E + L+             R +
Sbjct: 99  RLDADALRGGAVDYLVKSDLNSAHLARAIRYALARREMETERLV-------------RLK 145

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE EN +KS FLA +SHELRTPL AILG++E++  +   P N      ++  + R+GQHL
Sbjct: 146 AEAENRSKSEFLAHLSHELRTPLTAILGYTELLIAQNSIPDN----LSHLQIVQRNGQHL 201

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L+L+N+ILD+S+IEAG+ E+    ++L   + +   ++ + A++KN+++    D  L   
Sbjct: 202 LSLLNDILDISKIEAGKLEMEFVRVNLQTYLADLYSLMAVSARDKNLQLRFIADMPLPEN 261

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEI 417
           +  D   +RQV+LNL+ NA+KFT   G + V V              + D GPGI + + 
Sbjct: 262 IETDPIRLRQVLLNLIGNAIKFTEQ-GEIIVRVQMIKEEEQEKIQFKVIDTGPGINQTDQ 320

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PN 474
             +   F Q         +G GLGL I++ +    GG   + S+  +G E  AI+   P 
Sbjct: 321 KRLFQPFTQAYANSIRRSEGAGLGLAISRQLAQRLGGDIRLSSQPGKGSEFTAIVKPGPL 380

Query: 475 TRVLNFIPE 483
             V    P+
Sbjct: 381 GGVKRIQPD 389


>gi|283470770|emb|CAQ49981.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 564

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 337 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 395 VNELLNVARMDAEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 454 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 512

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 513 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|224584097|ref|YP_002637895.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468624|gb|ACN46454.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 920

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            E   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QEQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 136/321 (42%), Gaps = 16/321 (4%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALS---FFTYITYHLFKSNVKILSCQAE--KDDLIAE 227
           +L+    +       +L   L    +    F     +  +          E     + A 
Sbjct: 269 SLALPRGVWPDPPTQALVVPLLQQGADPVGFLVAALNSHRRLDAPYRGFIELVAGHIAAG 328

Query: 228 LEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLNN 284
           +  A+S   + R+  E  E +LAK+ F +++SHE RTPL  ILG  +E++    +     
Sbjct: 329 IGSARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDV--- 385

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +   HR+G  L  L+N +LD SRI+AGR       + L  +  E   + +   +
Sbjct: 386 -RVREELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIE 444

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E      P    V+ D     +V+LNLLSNA+KFT   G V V V         ++
Sbjct: 445 RAGLEFTVDCPPLAEPVFVDRDMWEKVVLNLLSNALKFTRE-GAVTVRVTA-DDGVAVVT 502

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E E+P +   F +       + +G G+GL + + ++  HGG    +S+   
Sbjct: 503 VADTGVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGR 562

Query: 465 GVEVIAILPNTRVLNFIPEDN 485
           G      +P       +P D 
Sbjct: 563 GTTFTIQMPFG--AAHLPADE 581


>gi|255589572|ref|XP_002535009.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
 gi|223524203|gb|EEF27374.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
          Length = 1204

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 13/315 (4%)

Query: 172  VALSTQAIMSMHVLDISLAGMLATALSF---------FTYITYHLFKSNVKILSCQAEKD 222
            +A  +Q   +  +  + L+ +   A            +  +    +++    +       
Sbjct: 746  MAQLSQMFSTGDLEHMVLSAVQGLAEVEHEYQDVEGHWWLVNVRAYRTTDDRIDGAVLAV 805

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMG 280
              I EL+ A   +   ++ AE  N AK  FL  +SHELR PLN I  ++ V++   E   
Sbjct: 806  QDIDELKRAVDRAQTAQRDAETANNAKDNFLGIVSHELRAPLNVIASWAAVLKTASERGL 865

Query: 281  PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              +++T +  +  I R  Q    LI+++LD+SRI +GR+ L    +     VR  +   +
Sbjct: 866  QTDDKTARRAVETILRQCQSQAALIDDLLDVSRITSGRFALDAQPVDFAATVRTVVEGHR 925

Query: 341  LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              A  K I +        + V  D + ++QV+ NL+ NA+KFT   GRV V +    G  
Sbjct: 926  PAATTKEITLISSGLHDEAVVSGDARRLQQVVSNLIGNALKFTPNSGRVEVALTRL-GAL 984

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +S+ D G G+    +P +   F Q  ++      G+GLGL I + ++A HGG     S
Sbjct: 985  IELSVADTGIGVNPDLLPHLFDRFMQSDMSRTRQYGGLGLGLSIVKHLVAAHGGTVAASS 1044

Query: 461  K-LREGVEVIAILPN 474
            +    G  +   LP 
Sbjct: 1045 EGEGRGTRLTVRLPL 1059


>gi|1498305|gb|AAC44299.1| SpiR [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 823

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|94311813|ref|YP_585023.1| periplasmic sensor hybrid histidine kinase [Cupriavidus
           metallidurans CH34]
 gi|93355665|gb|ABF09754.1| Response regulator receiver :ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Cupriavidus
           metallidurans CH34]
          Length = 632

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 171/468 (36%), Gaps = 28/468 (5%)

Query: 28  PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ----NPIFPMWSLITLAVY 83
           P     D E     + ++ RVSP       L+  +  +       +    +W  I L + 
Sbjct: 47  PPGPQLDTETRAKLLVTVHRVSPTGIASSALLPGLTAYTFWNEANHVALVIWCAIMLLLT 106

Query: 84  AANLSLGKKVMN---SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
              +              +      W   +       GL W    L+   + +  + ++ 
Sbjct: 107 IGGMWFYLGFQRDMGRLSRSAHTRKWWNNMRAIAFLTGLTWGSSALLHLYSSSVVFSSVL 166

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
              TL +    +   + +    VF     +V  +                 +LA      
Sbjct: 167 YLLTLGVLAGGATSQSPIPSNLVFAGVPILVPNVLLADFAFPGHGTYVQL-LLAIYALML 225

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              + +L  + V+ +  ++E   L  + +       E ++RA   +  KSRFLA+ SH+L
Sbjct: 226 ARHSLNLQHTLVRAIQLESESRRLAKQFQ-------EEKERALHASEEKSRFLAAASHDL 278

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           R P++A++   E +         +      +  +    Q +  L   +LDLS++E  +  
Sbjct: 279 RQPVHALVMLVEALRARNQSSSLHP----LVEQVAAGTQTIDLLFRSLLDLSKLEGRKVL 334

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
            +     L  ++ + +      A+E  + +  ++   L    A+   +R+ + NL+ NA+
Sbjct: 335 PTLEPCELNSLIHDVMSQFAADARESGLTLTPRVPDEL-FAMAEPVLLRRALFNLVQNAL 393

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++T  GG   +       +   + + D G GI    +P + + + Q     +   QG+GL
Sbjct: 394 RYTKRGG--ILVTARQRRKHVRLEVWDTGAGITPEHLPEIFSPYYQVHNPQRDPSQGLGL 451

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GL I +  +    G + +RS   +G      L        +PE+   S
Sbjct: 452 GLAIFRECVRLMRGTYGVRSVPGKGSVFWFAL------APVPEETVAS 493


>gi|228921981|ref|ZP_04085292.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837589|gb|EEM82919.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 448

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|119503200|ref|ZP_01625284.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119460846|gb|EAW41937.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 664

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 121/256 (47%), Gaps = 7/256 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +D    L+ A    +  R  A+     K+ FLA+MSHE+RTP+N ++G   +I+   +  
Sbjct: 228 EDREHSLQQAIKALEVARDEAQHVADTKTSFLANMSHEIRTPMNGVVGMISLIKETEL-- 285

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             ++  + Y   I +S   LL +I++ILD +++E+G   +  +  SL D++     + ++
Sbjct: 286 --SKRQRVYFDTIEKSAAGLLVVIDDILDFTKLESGHLRIRTAPFSLSDLLATLNTIFEM 343

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSG 398
           +A  K ++        L   V  D   +RQ++LNL+ NAVKFT  G   + VT +  +  
Sbjct: 344 QAANKGLKFQLVSADGLPDRVIGDPARLRQLLLNLIGNAVKFTDEGSVELLVTPIAESEA 403

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI E + P +   F Q  I    A  G GLGL + + +    GG    
Sbjct: 404 SLIRFEVVDTGIGIPEEKQPGIFKEFYQVDITSTRAYGGTGLGLALCRELAQLMGGSVSF 463

Query: 459 RSKLREGVEVIAILPN 474
            S   EG      +P 
Sbjct: 464 SSTEGEGSCFWLDVPL 479


>gi|94502158|ref|ZP_01308657.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
 gi|94425705|gb|EAT10714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
          Length = 629

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 18/327 (5%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD----------DLIA 226
             I S+ V+ +    + A            + +S   +   Q + D          DL  
Sbjct: 177 SFINSVMVIFVITFILFAVLYFTLDRPIRSIKRSIKHLARKQYDVDIQDSIWSEFADLAY 236

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
               A+ L  +     +++   K +F+AS+SHELRTPLN ILG + ++  +      N  
Sbjct: 237 HGNKARDLLKQADAYEKQQQKYKDQFVASVSHELRTPLNGILGLTNLLVKQ----NPNSK 292

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + I  IH S Q LL+++NEILD S+I++G++ +    + +         +L   A  K
Sbjct: 293 KSKTIQKIHLSAQMLLDVVNEILDYSKIQSGKFNIELIPVDIQTDFNHVFSVLTHLAHNK 352

Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQY 402
           +I+    IDP++ + V +D   ++QVI NL SNA+KFT  G     + +          +
Sbjct: 353 DIDFHIFIDPNIRTRVLSDPLRLQQVINNLCSNAIKFTNQGKVVASIDIEDESVDSLTLH 412

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
               D G GI++  +P +  +F Q   ++     G GLGL I+Q I+   GG   + S+L
Sbjct: 413 FKFMDTGIGISDDALPHLFEAFKQSDDSVTRQYGGTGLGLFISQQIVKALGGHIEVESRL 472

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
             G      L   +  +   E   ES+
Sbjct: 473 GGGSTFEFTLTMKKTGSDTQEVISESS 499


>gi|332528037|ref|ZP_08404070.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2]
 gi|332112610|gb|EGJ12403.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2]
          Length = 1055

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 25/340 (7%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            + +   ++  A   + F     +       +  +    A     A   +   T    + 
Sbjct: 229 AAGIQAAVVTNAALAALF--YAVVLVLRRRVLQPIGTLSAVARQIARGEYGERTRRHERG 286

Query: 211 NVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             ++       D +       IA  E A       R+ A+E N AKSRF+ +MSHE+RTP
Sbjct: 287 VEELAGLGDALDAMANRFQADIAAREQAGRELQLAREEADEANEAKSRFVRNMSHEMRTP 346

Query: 264 LNAI-LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           +N I LG + +     +        ++++     + + +L LIN++LD S+IEAGR  + 
Sbjct: 347 MNTIVLGLTHLSLQTDLSG----EQRDFVDKAQAASRMMLALINDVLDFSKIEAGRMTIE 402

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-----WADEKGMRQVILNLLS 377
            +  SL ++V + + +++  AQ K +E+          V       D   ++QV+ NLLS
Sbjct: 403 SARFSLEEVVGQAVELVRQPAQHKELELLCDWADPSLLVDRGTLRGDALRLQQVLTNLLS 462

Query: 378 NAVKFTAIGGRVHVTV-GWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NAVKFT+  G+V +TV   TSG    +     ++D G G++  +I  +   F Q  ++I 
Sbjct: 463 NAVKFTSR-GQVRLTVDSATSGDDAVVDLLLVVEDTGIGMSAEQIGHLFREFAQADVSIT 521

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I + ++   GG   +RS+   G      L
Sbjct: 522 RHYGGTGLGLAITRRLVELMGGTIAVRSEPGVGSRFEVRL 561


>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
 gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
          Length = 949

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++   +    +     
Sbjct: 451 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLPSGID----S 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   +        +K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLVVKKRLT 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+  +   +  D   ++QVI NLL+NA+KFT   G + +    T         +D 
Sbjct: 567 LYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHT-GCIILHAYVTQ-GYLAFRTRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 625 GVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEPGMGSQF 684

Query: 469 IAILP 473
           I  +P
Sbjct: 685 IVRIP 689


>gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 480

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 12/240 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL ++  + E +E   +   + ET   +I         ++
Sbjct: 222 DKAERERRLFVSNVSHELRTPLTSVKAYLEALEDGAI--EDKETASSFINVSLTETNRMI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDI-------VRECIIMLQLRAQEKNIEIFQKID 355
            +I+++L LSR++  R  L++  I+LI         + + +          N  + +K  
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D   + QVI N++ NA+K++  GG + ++V         ISI D G GI + 
Sbjct: 340 EQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESD-VLISISDQGMGIPKS 398

Query: 416 EIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  +   F +    +  S   G GLGL I   I+  HGG     S+   +G      LP
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|225378733|ref|ZP_03755954.1| hypothetical protein ROSEINA2194_04403 [Roseburia inulinivorans DSM
           16841]
 gi|225209570|gb|EEG91924.1| hypothetical protein ROSEINA2194_04403 [Roseburia inulinivorans DSM
           16841]
          Length = 439

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 22/288 (7%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-----------AKSLSDETRKRAEE 244
                T + + L K  V  +   A+   L+ E +V            K   D  +     
Sbjct: 161 VFVLCTVLAHRLTKRLVAPIEKMADNIVLLEENDVYDEMKPFVATIKKQHVDILKH---- 216

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F A++SHEL+TPL AI G++E+I     G  + E    +  +IH+S + L  L
Sbjct: 217 -SQMRQEFTANVSHELKTPLTAISGYAELIAS---GMTSGEDTIHFATEIHKSAERLQYL 272

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+I+ LS +++   ++    + L ++   C  M+++ A++  + +  + D   + +  +
Sbjct: 273 INDIIKLSELDSDDTKIEFETLDLHEMALNCQAMMEIPAEKNEVTVEVQGDS--AEIRGN 330

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + ++I NL SNAV++   GG+V +  G T      +++KD G GI +     V   F
Sbjct: 331 RNLIDELIYNLCSNAVRYNKKGGKVTIMTG-TENGHPTLTVKDTGIGIPKEAQKRVFERF 389

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   +   +  G GLGL I + I+A H  Q  + S+   G E+  + 
Sbjct: 390 YRVDKSRSKSTGGTGLGLAIVKHIVAQHEAQISLESEEGAGTEIKVVF 437


>gi|83815466|ref|YP_444999.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756860|gb|ABC44973.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 322

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 138/324 (42%), Gaps = 18/324 (5%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-------------- 219
           ++  +        + L   +    +   ++   L      +   +               
Sbjct: 1   MAVSSASGGSAALLGLGTAVLVYAASHVWLHRRLRHLQGVLHEIRTHEFAAETPPSGPHG 60

Query: 220 -EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E   L+ E+       +   +  +E    +  F+ ++SHEL+TP+ ++ GF+E +    
Sbjct: 61  DELSTLLWEVYRTGQSLETEIQELKEMESYRREFIGNVSHELKTPIFSVQGFAETLLDGA 120

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   +    + ++  I      L +L  ++  +++IE    ++S  A ++ ++    I  
Sbjct: 121 LD--DESVNRTFLKKILHHANRLDSLARDLSTITKIETDELDMSNEAFNVAELFDAAIES 178

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +++RA+EK I   Q++ P L  ++ D   +R+V++NL+ NA+K+   GG V +    +  
Sbjct: 179 VEIRAEEKGIMPRQRVAPDLPQIYGDFDRLRRVLVNLVDNAIKYNQDGGTVQLEAE-SQN 237

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I + D+G GI+   +P +   F +   +    + G GLGL I + I+A H  +  +
Sbjct: 238 DEVVIRVVDDGIGISPDHLPRLTERFYRVDKSRSRNQGGTGLGLAIVKHILAAHDRELHV 297

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S   EG      LP +   +  P
Sbjct: 298 ESAPEEGSTFYFTLPTSPQPSLQP 321


>gi|317149004|ref|XP_001823058.2| hypothetical protein AOR_1_342114 [Aspergillus oryzae RIB40]
          Length = 1187

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 12/275 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++  +I+  +     + + +E         R+  EE   +KS  LA+MSHE+RTP++ I+
Sbjct: 629 RTFDEIIKLKNSIRHMTSIVEKRLEHCISARETVEEAYHSKSELLATMSHEIRTPIHGII 688

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +++               +    +H  G+ LL  IN +LDLSRIEA R  +     +L
Sbjct: 689 GMAQL---GLEAGCLPAVAHDAFNLVHSLGKSLLANINNVLDLSRIEASRMVIESIPFNL 745

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              V   +  L + A +K  ++  ++   +      D   + Q++ NL+ NAVKFT   G
Sbjct: 746 GSTVLSTLKPLAVEASKKMTDLTYEVGSHVPQHAIGDPNRLCQILFNLVGNAVKFTN-NG 804

Query: 388 RVHVTVGWTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           R+ ++V     +           S+ D G GI   ++  +   F Q   ++     G GL
Sbjct: 805 RIELSVKTAQQQACAKNQCVLEFSVADTGVGIPPNKLELIFDRFQQADDSVMKQFGGTGL 864

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I++ +++  GG   +RS + +G       P  
Sbjct: 865 GLAISRKLVSLMGGDIWVRSTVGKGSIFSFTCPLK 899


>gi|223043250|ref|ZP_03613297.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
 gi|222443461|gb|EEE49559.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
          Length = 588

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  ++ +G +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLGVVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    + +++ +     +++A +  + +             D
Sbjct: 413 VNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + VT      +   + I D G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTQPGDAIAVTAS-KDEQYNILYISDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +   + K  +QG GLGL I + I+  HGGQ  ++S+L +G   I  LP  +    
Sbjct: 532 YKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLPQPKNNEA 587


>gi|167551639|ref|ZP_02345393.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323546|gb|EDZ11385.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 920

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|83771795|dbj|BAE61925.1| unnamed protein product [Aspergillus oryzae]
          Length = 693

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 12/275 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++  +I+  +     + + +E         R+  EE   +KS  LA+MSHE+RTP++ I+
Sbjct: 135 RTFDEIIKLKNSIRHMTSIVEKRLEHCISARETVEEAYHSKSELLATMSHEIRTPIHGII 194

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G +++               +    +H  G+ LL  IN +LDLSRIEA R  +     +L
Sbjct: 195 GMAQL---GLEAGCLPAVAHDAFNLVHSLGKSLLANINNVLDLSRIEASRMVIESIPFNL 251

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
              V   +  L + A +K  ++  ++   +      D   + Q++ NL+ NAVKFT   G
Sbjct: 252 GSTVLSTLKPLAVEASKKMTDLTYEVGSHVPQHAIGDPNRLCQILFNLVGNAVKFTN-NG 310

Query: 388 RVHVTVGWTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           R+ ++V     +           S+ D G GI   ++  +   F Q   ++     G GL
Sbjct: 311 RIELSVKTAQQQACAKNQCVLEFSVADTGVGIPPNKLELIFDRFQQADDSVMKQFGGTGL 370

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL I++ +++  GG   +RS + +G       P  
Sbjct: 371 GLAISRKLVSLMGGDIWVRSTVGKGSIFSFTCPLK 405


>gi|261246598|emb|CBG24408.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 920

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|16764742|ref|NP_460357.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167995025|ref|ZP_02576115.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419913|gb|AAL20316.1| secretion system regulator: Sensor component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205327213|gb|EDZ13977.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993280|gb|ACY88165.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157927|emb|CBW17422.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912377|dbj|BAJ36351.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224018|gb|EFX49081.1| Secretion system regulator: Sensor component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|332988279|gb|AEF07262.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 920

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|284050736|ref|ZP_06380946.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 478

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+NAILGF ++++    G + ++  + Y+  I   G+ L++LI++ILDLS+
Sbjct: 1   ANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDAIAAGGRALISLIDDILDLSK 56

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVI 372
           IEAG+ EL    + L  +++E   +    A  K + +    +P++  + A DE  +RQ++
Sbjct: 57  IEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINFEPNVPKIIAFDEVRLRQIL 116

Query: 373 LNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGS 428
            N++ NA+KFT  G   + V         +    I + D G GI   +   +  +F Q  
Sbjct: 117 FNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTGIGINPDQHQQIFEAFVQSE 176

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
                   G GLGL I + +    GG   + S+L  G       P+ ++   
Sbjct: 177 GQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVFTFTFPDVQITQS 228


>gi|229917478|ref|YP_002886124.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229468907|gb|ACQ70679.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL  +  + EV+        + E    ++       + ++
Sbjct: 378 EQVEQDRREFVANVSHELRTPLTTMRSYLEVLAEGAY--QDEELAPRFLETTQNETERMI 435

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++  Y++ +     +    + I   ++  +   I+  +K+      V 
Sbjct: 436 RLVNDLLQLSKMDSKEYKMQKVKFDFVQFFNDIIDRHEMT-KGDAIQFRRKLMKRRVYVH 494

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD+  M QVI N+++NA+KF+  GG +       + +   I IKD G GI +  +  +  
Sbjct: 495 ADQDKMTQVIDNIITNAIKFSPEGGTITFRTMLRA-KRLVIGIKDEGVGIPKSNLKKIFE 553

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            F +   A      G GLGL IA+ +++ HGG     S+   G  +   +P   ++ 
Sbjct: 554 RFYRVDKARARNIGGTGLGLSIAKEVVSAHGGDIWAESEFGRGTTIYFTIPFDTIVE 610


>gi|172037147|ref|YP_001803648.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698601|gb|ACB51582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 1499

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 25/291 (8%)

Query: 219  AEKDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             E+  +  EL       +E     + A+  N AKS FLA+MSHE+RTP+N+I+  S+++E
Sbjct: 1091 TERKRIEQELVRRNKALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVSQLLE 1150

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               +        K+ +  ++ +  HLLNLIN+IL LS++E+   EL      L  + +E 
Sbjct: 1151 GTNLDT----QQKKLLQTLNNNSNHLLNLINKILSLSKLESRTLELEHRPFHLNQMFQEL 1206

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                  +AQ K I +   I   +  V   D+  ++QV  NL+SNA+KFT   G+V VT  
Sbjct: 1207 SHTFTPQAQSKAIGLTFTIASEVPDVLMGDDFRLQQVFSNLISNAIKFTFS-GQVTVTAT 1265

Query: 395  WTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              +           Y +++D G GI   +  ++   F Q   +      G GLGL I + 
Sbjct: 1266 LPNDTVSQSSPVTLYFTVQDTGIGIDPTKQDSLFQPFVQADTSTTRQFGGTGLGLTICRR 1325

Query: 448  IMANHGGQFLIRSKLREGVEVIAILPNT-----RVLNFI----PEDNHEST 489
            I+ +  G+  + S++ +G      +P       R+        P+   ++T
Sbjct: 1326 IVQSMKGEIGLDSRVGKGSTFWVKIPFALGDGIRLPETAETNNPDPERQAT 1376


>gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 808

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK+ E     K+ F+A++SHELRTPL +I G   +I  +  G L ++T K  +    R+ 
Sbjct: 442 RKKDEA---MKNEFVATVSHELRTPLTSIRGALGIILGKFSGELPDKTQK-MLTLALRNC 497

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  LIN+ILD+ ++E+G      +  +L  I+   I      A+   I +  + D   
Sbjct: 498 ERLTLLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGYAKHHQITVTFESDTET 557

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           + + AD   M+QV+ NLLSNA+K++  GG V+VT+   +G    + I D+G GI      
Sbjct: 558 AYINADSTRMQQVMANLLSNAIKYSKSGGEVNVTLE-NNGSSFRVEITDHGAGIPPEFHE 616

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + T F Q   +      G GLGL IA+SI+  H GQ    S  ++G      +PN 
Sbjct: 617 HLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVPKQGATFFFTVPNE 673


>gi|257440236|ref|ZP_05615991.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|257197270|gb|EEU95554.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
          Length = 473

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 155/329 (47%), Gaps = 9/329 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             ++  +++  L  A   S F V + +    +       +     +   L     I   +
Sbjct: 153 VAAMRLVTSLTLVQAQLKSVFIVSLIVVAAILGFTVASGLYFVRGIVVPLGQVERIAASI 212

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  + +       +    E++  +   ++  +  EE    K+ F++S+SHELRTPL +I
Sbjct: 213 ARGELDVRLPVTGDER--DEVDRLRGTINQMAEGLEETEKMKNEFISSVSHELRTPLTSI 270

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E +   T+    +E Y++ +  I+     L N++ E+LD SR++ GR ++    + 
Sbjct: 271 RGWVETLR--TLDDPTDENYRKGLEIINNETARLYNMVEELLDFSRLQNGRLKMECRPLD 328

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L+  + + ++  + R Q + + +       +  V+AD   +RQV +N+L NA+K++A GG
Sbjct: 329 LVAELTDAVLFCEARIQREGLLLAYAEPEEMIPVYADPDRLRQVFINILDNAIKYSAPGG 388

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           R+ V + W      +I I D G GI   ++  V T F +GS +++    G G+GL +  S
Sbjct: 389 RITVKI-WQGEYKAFIEIIDQGRGIPPEDLENVKTKFYKGSNSVR----GSGIGLALVDS 443

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
           IM    G   ++S L  G  V   LP  +
Sbjct: 444 IMTALDGTMDLKSTLGRGTVVTLGLPIYK 472


>gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1]
 gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1]
          Length = 785

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 6/281 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     + L ++    ++ R+RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTDELKASNSSLSLSNQELEQARRRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALALDNPL----PSEQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 +  +V +   +L     +             SSV  D   +RQ++ NLLSNA+K
Sbjct: 375 ERIPFDMGSMVEDTANLLSQNTAQSVELTCLIASDFPSSVLGDPTRVRQIVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +  T   G  + ++D G GI E     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVRL-VTIVGGVRLEVRDTGIGIPEEAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           L + +++     G   IRS+   G    A LP       IP
Sbjct: 493 LALTRNLCKAMQGHLHIRSEPGFGSCFTAELPLAVHTEAIP 533


>gi|49483741|ref|YP_040965.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241870|emb|CAG40563.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 588

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-D 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 478 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 537 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|167574162|ref|ZP_02367036.1| probable two-component sensor/regulator [Burkholderia oklahomensis
           C6786]
          Length = 920

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 158/383 (41%), Gaps = 20/383 (5%)

Query: 97  DIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
                +   W       ++     G  W +  +      T + +++    T    +    
Sbjct: 249 LPPKCDRTHWIRRGDYYVICTPLSGPNWQVAAIYPVSAVTDKAMSLLPLTTRWTFVVQLL 308

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L  F+          P+   +          L   L       L         L  +   
Sbjct: 309 LIAFVYVTLQRQLGQPLQHFVDIIDAQREGDLGRRLPTGRRDELGRIASAYNSLLSTVNA 368

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                     L +++        E ++ AE  +  KS  +AS+SHELRTPLN I+G   +
Sbjct: 369 YYKT------LESKVRERTRELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALAL 422

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +        ++ +    +S  +LL ++N +LD SRIEAG+ EL+     L+ ++ 
Sbjct: 423 LNRSAL----QAEQRDLVRVAQQSSSYLLGIVNNVLDFSRIEAGQLELASEESDLLALLD 478

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + ++ + +RAQEK++ +   +   +   VW D   +RQ+++NLL NAVKFT   G +H+T
Sbjct: 479 QAMLTIHIRAQEKSLSLRTFVAADVPRRVWLDGLRVRQILINLLGNAVKFT-EHGHIHLT 537

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V   +    ++ ++D G GI +     +   F Q          G GLGLPIA  +    
Sbjct: 538 VERRADMLAFV-VEDTGKGIPDDYQLDIFKPFVQVRAHDS----GNGLGLPIASRLANLM 592

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G+ L+ S+L +G     +LP  
Sbjct: 593 NGEILLDSRLGKGTRFTVLLPLQ 615


>gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 631

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 222 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 281

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 + Y + +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 282 ---EEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 338

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   + P+   V  D   ++QV+ NLLSNA+KFT   GR+ V +     
Sbjct: 339 QELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER-DD 397

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 398 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 457

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 458 TSGGRGKGATFTVRLP 473


>gi|53748095|emb|CAG38882.1| putative histidine kinase BvgS [Bordetella holmesii]
          Length = 1218

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E++      P      ++ +   
Sbjct: 704 LQEAKEEADAANRAKTTFLATMSHEIRTPMNAIIGMLELVLRR---PPEQAVDRQALMVA 760

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + S + LL+LI +ILD+S+IEA + EL+     L  ++   + + Q  A++  + +   I
Sbjct: 761 YDSARSLLDLIGDILDISKIEADKLELTPVPTDLRRLLESVVNVFQGMARQNGLSLRLDI 820

Query: 355 -DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGP 410
               + +V  D   ++QV+ NL+SNA+KFT  GG  V + V         I I   D+GP
Sbjct: 821 GADQVPAVSIDASRLKQVVSNLVSNALKFTEKGGVTVSMQVRPVEQGLARIEIAVDDSGP 880

Query: 411 GIAEGEIPTVLTSFGQGS---IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           GI+  +   +   F Q      A K    G GLGL I++ I+   GG F + S   +G  
Sbjct: 881 GISAADRRRLFEPFTQVHQEARADKGRLAGTGLGLAISRRIVQAMGGSFDLSSIPGKGTR 940

Query: 468 VIAIL 472
           +   L
Sbjct: 941 IDVQL 945


>gi|228903186|ref|ZP_04067320.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
 gi|228856468|gb|EEN00994.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
          Length = 484

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEINLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVIDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|228910523|ref|ZP_04074337.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
 gi|228849087|gb|EEM93927.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
          Length = 484

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEINLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVIDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|218899824|ref|YP_002448235.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218544331|gb|ACK96725.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 484

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEINLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVIDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1077

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 12/303 (3%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             + + +     L   + +        +D+   L +    ++  R+ AE  N AK+ FL+
Sbjct: 647 GPVLWVSVTVSLLRDEHGQPHRLVGLVEDISEHLRL--EEAEHARESAETANRAKNEFLS 704

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSHELRTPLNA+LGF++++     G   +E ++ ++  I ++G HLL +IN++LDLSRI
Sbjct: 705 RMSHELRTPLNAMLGFAQLL-DLDRGEPLHERHRMWVTQIQQAGWHLLEMINDVLDLSRI 763

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           E+G   L   ++SL  ++   + +++ +A+ + + + + +       V  D   ++Q++ 
Sbjct: 764 ESGTLSLQVESLSLEPLIAASMALVEPQARGRGLTLVRTMAEHAPLQVLGDATRVKQILT 823

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSNAVK+    G V V+   T  R       + + D G GI    +  +   F +   
Sbjct: 824 NLLSNAVKYNREAGEVRVSTRRTEDRDGTPMLELDVCDTGLGIEPQLLTQLFQPFNRLGR 883

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN---TRVLNFIPEDNH 486
               A +G G+GL IA+ +    GG   +RS+   G      LP     R +    E + 
Sbjct: 884 ER-GATEGTGIGLVIAKLLAERQGGSLKVRSEPGVGSTFTLRLPLDSQARPMTASQEADE 942

Query: 487 EST 489
           E+ 
Sbjct: 943 EAN 945


>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 782

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 30/387 (7%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           +  + +G     +     G       T      LL +L++S +   +  + +      V+
Sbjct: 132 LADLPLGQLVVTIDTYHYGIQFLTRATNTLIIGLLKSLALSGVLLAIFYFVLTRPMMNVI 191

Query: 172 VALSTQAIMSMHVLDI------------SLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            ALS     S   + +            ++ G++   L         L  +   + +  +
Sbjct: 192 NALSQVRASSPEKVRLPIPENHKGDEIGTMVGIINQHLENMEVSVAKLRSAESAMKNYSS 251

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEE-NLAKSR----------FLASMSHELRTPLNAIL 268
           + +  + +     S  +E   R       AK            FLASMSHE+RTPLN +L
Sbjct: 252 QLEREVEDRTREISEKNEALLRGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVL 311

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G   +     +    +   +  +     +G+ LL L+N+ILD+S++EAG+  L     S+
Sbjct: 312 GMLGL----ALESEKDAGQRNRLEIALNAGESLLGLLNDILDISKVEAGKLSLESIPFSM 367

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ EC  +   +A+ K I +  +  P L      D    RQ++ NLLSNA+KFT   G
Sbjct: 368 RKLIEECATLHAQQARRKGINLVNETAPDLPEHFLGDPTRTRQILNNLLSNAIKFTDA-G 426

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V +   W SG    + + D G G++   +  + + F Q          G GLGL + + 
Sbjct: 427 TVKIRTSW-SGGSLRLEVIDTGIGMSREGLHRIFSPFSQADTDTTRLYGGTGLGLTLCRQ 485

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
           ++    GQ L+ SK   G      LP 
Sbjct: 486 LVERMHGQILVDSKEGTGTHFTVTLPL 512


>gi|75760732|ref|ZP_00740755.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491787|gb|EAO54980.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 484

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEINLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVIDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|27365587|ref|NP_761115.1| putative sensor/response regulator hybrid [Vibrio vulnificus CMCP6]
 gi|27361735|gb|AAO10642.1| Probable sensor/response regulator hybrid [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E RKRAEE   A   F+A ++HELRTPLN +LG +E++    +    N+  + Y+ 
Sbjct: 192 ERETELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLGNTYL----NDEQQLYLR 247

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           ++ + G+ L  +IN++LD S++ AG  E+        ++    + +   +A EK I    
Sbjct: 248 NLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIVGIFAAKASEKQIGFHI 307

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           +    +   V  D + ++Q+++NL+ NA+KFT   G V     W       + I+D G G
Sbjct: 308 EKQFGMPSCVCGDVERIKQILVNLIGNAIKFT-QHGAVTFRTHWQ-DDVLSVEIEDTGIG 365

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IAE    T+   F Q   + K   +G GLGL I Q++    GG+   RS+L +G      
Sbjct: 366 IAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEIGFRSELGQGSCFHFA 425

Query: 472 LPNTRVLNFIPEDNHESTQ 490
           +P       + E + E  +
Sbjct: 426 IPLPASDEPLLEPHTEQVE 444


>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
 gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
          Length = 949

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT I G + + +    G    I ++D 
Sbjct: 567 LYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLAR-DGDYLSIRVRDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F      ++   QG GLGL I + ++    G   + S+   G + 
Sbjct: 625 GVGIPAKEVVRLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQF 684

Query: 469 IAILPN 474
              +P 
Sbjct: 685 TIRIPL 690


>gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 915

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 17/367 (4%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
             P   T     +     +++ L+++ L  + L   +      +  A + + I   ++  
Sbjct: 161 TVPTAVTQTEWLLRSLVIIVVLLALTGLVIYRLEQPISAPLEQM--AETVRRIGRGNLEA 218

Query: 187 IS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +       LA +     +    I     +   +I S   +  D +  ++         R
Sbjct: 219 RTGVRTGGELAQLAHGIDNMAENIQRAHARLAERIQSATRDLQDQLDLIDQKNRELTLAR 278

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AEE N  KS+ LAS+SHELRTPL+AI G++E++  E  G L++     ++  I+ S +
Sbjct: 279 GKAEEANQRKSQLLASISHELRTPLSAIQGYAELL--EQYGDLDDRDL-GWLEIINTSSK 335

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             L L+N++LD++R+E+GR  +  S   L   + E I + +   +++ +++   + P   
Sbjct: 336 DTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVDVTLIMSPETP 395

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEG 415
           + + +D    +QVI NLLSNA+KFT   G+V+V              I ++D GPGI   
Sbjct: 396 ASITSDHLRFKQVITNLLSNALKFT-ANGQVNVHASVRQEGRTRQLEICVRDFGPGIEPD 454

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++P +   F Q          G GLGL I + I    GGQ L+ S    G     +LP  
Sbjct: 455 DLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSAPGTGSLFTLLLPLY 514

Query: 476 RVLNFIP 482
                +P
Sbjct: 515 DSDVPLP 521


>gi|37680265|ref|NP_934874.1| hypothetical protein VV2081 [Vibrio vulnificus YJ016]
 gi|37199012|dbj|BAC94845.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 571

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E RKRAEE   A   F+A ++HELRTPLN +LG +E++    +    N+  + Y+ 
Sbjct: 192 ERETELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLGNTYL----NDEQQLYLR 247

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           ++ + G+ L  +IN++LD S++ AG  E+        ++    + +   +A EK I    
Sbjct: 248 NLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIVGIFAAKASEKQIGFHI 307

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           +    +   V  D + ++Q+++NL+ NA+KFT   G V     W       + I+D G G
Sbjct: 308 EKQFGMPSCVCGDVERIKQILVNLIGNAIKFT-QHGAVTFRTHWQ-DDVLSVEIEDTGIG 365

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IAE    T+   F Q   + K   +G GLGL I Q++    GG+   RS+L +G      
Sbjct: 366 IAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEIGFRSELGQGSCFHFA 425

Query: 472 LPNTRVLNFIPEDNHESTQ 490
           +P       + E + E  +
Sbjct: 426 IPLPASDEPLLEPHTEQVE 444


>gi|219667788|ref|YP_002458223.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219538048|gb|ACL19787.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 356

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 143/351 (40%), Gaps = 13/351 (3%)

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFML------PYAVFLSFFPVVVALSTQAIMSM 182
           PG  +     +        AL+        +      P  +    F  + AL+  A++  
Sbjct: 8   PGPPSVIRGILMLILIYGSALAGGYGITAQIYRVTGPPSELLRQVFSGLTALALIAMVMG 67

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                 +        +    +T  L +          +        ++A++++D  R   
Sbjct: 68  LTASWRMGRGQRPHENIHDILTDALAQIARGNFDVFLDAKATNMHHDLAEAINDMARG-L 126

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                 +  F++++SHE+++PL +I GF+ +++ E +     E  + Y   I    + L 
Sbjct: 127 GNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDLSA---EQRRRYAEIIEGESKRLS 183

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L   +L L+ ++  +  L+     L   +    ++L+ +   KN+ +  ++   L  + 
Sbjct: 184 SLSENLLKLTTLDNSKLPLNRQDFRLDKQLEHVALLLEPQWSAKNLTLEAELP--LCILC 241

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV  NLL NA+KFT  GG++ + +    G    ++I D G GI   +   +  
Sbjct: 242 GDEDLLSQVWTNLLHNAIKFTPEGGQISIGLKQ-EGDAAQVTIGDTGIGIGPEDRIHIFE 300

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   +  G GLGL + + I+  HGG   + S + EG      LP
Sbjct: 301 RFYKADKARARSAGGNGLGLSLVKKIVDLHGGSIRVESTIGEGTTFEVFLP 351


>gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 605

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 117/416 (28%), Positives = 185/416 (44%), Gaps = 15/416 (3%)

Query: 72  FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV-EPG 130
              WS        A  ++   +  +         W   L        L   ++  +    
Sbjct: 161 ALGWSAAVAMPIFAITAICHVLSLAIEYRRREGSWSDRLRAASARNALLLDVVDDLVTWH 220

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISL 189
                 L   + A  L   S  +L    L   V +S  P  + A+S  A +   V     
Sbjct: 221 DRNGGVLQASRGAIRLAGASPQSLLGRGLLGRVHVSDRPAFLKAISDAASLDGPVTVQFR 280

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE------ 243
                 A      + +   +++       A      A + V + +S+  R  AE      
Sbjct: 281 LHADLPASGEPGRVIWAEMRAHRVPAGAGAVPGQ-AAVVAVTRDVSEHHRHAAELDRARA 339

Query: 244 ---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                +  KSRFLA +SHELRTPLNAI+GFSE++  E    L  E  +EY   I  SG+H
Sbjct: 340 EAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAEAGLTLPVERQREYAVIIQSSGRH 399

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL ++N +LDL+RI++G ++ +     +  +V  C  ++QLRA +  +E+ + +   L  
Sbjct: 400 LLEVVNALLDLTRIQSGSFDFAPEPFDIRAVVNGCCDLMQLRADQVGVELLRDVPRDLPE 459

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD +  RQ+++NLLSNAVKFT  GGRV V+V   +     +S+ D G GIAE ++P +
Sbjct: 460 LTADPRACRQMLINLLSNAVKFTPRGGRVTVSV-RQAYDRIELSVTDTGIGIAEADLPRL 518

Query: 421 LTSFGQGSI--AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F Q     A     +G GLGL + + ++  H G+  + S +  G  V+  LP 
Sbjct: 519 GDPFFQAGDAAAYARMHEGTGLGLSVVRGLVGLHDGEMTLESSVARGTRVVVALPL 574


>gi|303326355|ref|ZP_07356798.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864271|gb|EFL87202.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 667

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 9/244 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G + +     + P      ++YI  IH +   LL++IN++LD 
Sbjct: 290 FLANMSHEIRTPMNGIMGMAYLALNTDLTP----QQRDYIEKIHGTCVSLLDIINDLLDF 345

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQ 370
           S+IEA   EL          +   + +LQ +AQ K + +   IDP++ +V   D   +RQ
Sbjct: 346 SKIEANHMELENLPFQPAHEIEAVLTLLQPKAQAKKLGLETVIDPNIPTVLSGDALRLRQ 405

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQG 427
           ++LNL SNAVKF+  G  R+ + +   +     +  S+ D G G++  E   +   F Q 
Sbjct: 406 ILLNLGSNAVKFSEHGTVRIDLELAHRTTDMVCLRCSVSDEGIGMSPEEQARIFKPFSQA 465

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNH 486
             +I     G GLGL + + + A  GG   + S+  +G      LP        +P D  
Sbjct: 466 DTSITRRFGGTGLGLALCRRLTALMGGGISVESEEGKGSVFRVELPFRLAAGADLPADAV 525

Query: 487 ESTQ 490
           +  +
Sbjct: 526 DGPE 529


>gi|299145321|ref|ZP_07038389.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515812|gb|EFI39693.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 674

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 371 WGLRPSVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 430

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    MG    
Sbjct: 431 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---MGGSTE 483

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 484 DEQQSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 543

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
             + +           +  D + M+QVI+NLLSNA KFT   G++ +        +    
Sbjct: 544 SLDNQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKR-GKITLDFSVNEEKQMAIF 602

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 603 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWRGSIWIDPDYT 658

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 659 GGARFVFSHPL 669


>gi|218781752|ref|YP_002433070.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763136|gb|ACL05602.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 886

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 13/317 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                  VL+  +       + F          S  K+     + +    EL+ A  L +
Sbjct: 405 GWYWLEGVLNSQMDVPGVGGVVFSGRDVTERKASEQKLQDAYQQLEKKNVELQNAHELLE 464

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              +  E  ++ KS+FLA++SHELRTPLN+I+  S ++       L +    E    I  
Sbjct: 465 ARARDLEVGSMYKSQFLANVSHELRTPLNSIILLSGILCENREKNLTDSDL-ECAQAIQS 523

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG+ LL LINE+LDLS+IEAG+  ++ S       V+         A+ K ++   ++D 
Sbjct: 524 SGKALLLLINEVLDLSKIEAGKMAVNTSFFETKTFVQAIEREFLPLAKNKGLDFSVRMDA 583

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISI 405
            +   V +D + + QV+ N +SNA+KFT   G V + V            +  +    S+
Sbjct: 584 DIPLRVQSDSQRLEQVLRNFISNALKFTKQ-GSVVLRVSRPRKEDALPGYSPSKCAAFSV 642

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI + ++  +  +F Q          G GLGL I++ I    GG     S+   G
Sbjct: 643 TDSGIGIPQEKMEEIFEAFTQADGTTSREFGGTGLGLTISREIARLIGGAVRAESEPGAG 702

Query: 466 VEVIAILPNTRVLNFIP 482
                ++P        P
Sbjct: 703 STFTLVIPEVYAAPADP 719


>gi|218895704|ref|YP_002444115.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218540583|gb|ACK92977.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 463

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L++IE   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-DEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454


>gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
 gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
          Length = 373

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 148/348 (42%), Gaps = 11/348 (3%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           + P  +      +Y + +++  L +       L   +  +    ++A    ++    +  
Sbjct: 29  LAPSFYRGHVERMYHALSMMGGLMMGEALRRDLEEGLRSTLTTALLAALPLSVAGAALSA 88

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
              +   +         +  + +   ++     E+D+          L++      E   
Sbjct: 89  SFASLRFSRTARLLAEGSRRMAQGEYRVRLPPLERDEFGEVALHFNRLAE----ALERVE 144

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            ++   + +++HELRTPL+A+  ++E +    M P       +    I +  + +  L+ 
Sbjct: 145 QSRVELIGTVAHELRTPLSALQAYAEALADGVMEPE------KAAERIQQEVRAMSRLVR 198

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++  +S++E+G  EL    +   +++ +     +   Q K + +       L  VWAD +
Sbjct: 199 DLSLVSQVESGAVELHPGPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPRVWADAE 258

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
              QV+ NLLSNA++ T  GGRV +    T G+    S++D GPGI E  +P +   F +
Sbjct: 259 RTLQVLANLLSNALRHTPEGGRVRLGAERT-GQAVVFSVEDTGPGIPEEHLPRIFERFYR 317

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +    + G G+GL IA+S++   GG+  + S+L  G      LP 
Sbjct: 318 IDPSRSRQDGGTGVGLTIAKSLVEAMGGRIWVESQLGRGSVFRFTLPL 365


>gi|293369483|ref|ZP_06616064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635435|gb|EFF53946.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 642

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 339 WGLHPSVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 398

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    MG    
Sbjct: 399 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---MGGSTE 451

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 452 DEQQSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 511

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
             + +           +  D + M+QVI+NLLSNA KFT   G++ +        +    
Sbjct: 512 SSDNQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKR-GKITLDFSVNEEKQMAIF 570

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 571 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWKGSIWIDPDYT 626

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 627 GGARFVFSHPL 637


>gi|288818393|ref|YP_003432741.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6]
 gi|288787793|dbj|BAI69540.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6]
 gi|308751985|gb|ADO45468.1| histidine kinase [Hydrogenobacter thermophilus TK-6]
          Length = 329

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
             +K  F+A++SHEL+TP+  I    E I  E      +E  +  +    +  + L N++
Sbjct: 105 ERSKKEFVANVSHELKTPIAIIKSILETIIEE----EKDEGKRRLLERALKRTEDLRNIV 160

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L ++++E+G  +L +  ++  ++V     ML+  AQ  N+E+  ++D +   V+ADE
Sbjct: 161 EDLLIITKLESGEEKLHKKMLNAKELVSVVFDMLREIAQNINVELINEVDENT-KVYADE 219

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +  ++LNL+ NA+K+   GG+V V    T      + + D G GI +  IP +   F 
Sbjct: 220 DKLNLLLLNLVDNAIKYNKEGGKVVVKA-RTEKGYVILEVSDTGIGIPKEHIPFIFERFY 278

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +      G GLGL I + I  +HGG+  + SK  EG      LP +
Sbjct: 279 RVDRSRSRELGGTGLGLSIVKHIALSHGGKVEVESKEGEGSTFRVYLPQS 328


>gi|258423145|ref|ZP_05686038.1| sensor protein srrB [Staphylococcus aureus A9635]
 gi|257846595|gb|EEV70616.1| sensor protein srrB [Staphylococcus aureus A9635]
          Length = 582

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 413 VNELLNVARMDAEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 471

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 472 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 530

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 531 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|256829874|ref|YP_003158602.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579050|gb|ACU90186.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 678

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN I+G  +++    +    +   KE++    RS + L  L+ +I
Sbjct: 312 KSEFLANMSHEVRTPLNGIVGMLQLLSHTYL----DAEQKEFVFTAIRSSKRLTQLLTDI 367

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           L++SRIEAG+ ++       +D+      +  + A+ K +E+  +ID ++   V  DE  
Sbjct: 368 LEISRIEAGKLDVVAQEFHFVDLRDSVRDLFVIPAKAKGLELSFEIDEAIPSHVVGDEGR 427

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSF 424
           +RQ++ NL+ NA KFT   G V VT       G      +++D G GI       +  +F
Sbjct: 428 LRQILFNLVGNATKFTPR-GSVQVTARRLDQGGQMHVEFTVQDTGVGIPRERQEDIFNAF 486

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q   +      GVGLGL I + ++    G   ++S+   G  +   +P 
Sbjct: 487 TQVDGSAVRQHGGVGLGLAIVRRLVDMMDGTITVQSEPGHGTTMTVRVPL 536


>gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1366

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 131/307 (42%), Gaps = 15/307 (4%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSN-------VKILSCQAEKDDLIAELEV 230
               +     ++ A +     +++ Y  Y L            +    Q EK  L   +  
Sbjct: 738  YGEAGGEARLAFAILAPWYRTWWAYAVYALLLGGFGVLLVRFRERKLQMEKLVLENTVRE 797

Query: 231  AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                     +  +E +  KSRF A++SHE RTPL  IL   E    E +   + E   + 
Sbjct: 798  RTEKIMLQTEELKEMDRIKSRFFANISHEFRTPLTLILAPLE----EELNKKSPEAQDKL 853

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  + R    LL L+N++L LS++EAG+ EL      L   +          AQ K I  
Sbjct: 854  L-MMKRYANRLLELVNQLLSLSKLEAGKMELQIQKSDLRRFLGVLSSSFDSLAQHKGISF 912

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKD 407
               +       W D   + +VI+NLLSNA KFT  GG V      T     +  +I++ D
Sbjct: 913  TTTVGVPEGHFWFDPDKLEKVIINLLSNAFKFTPAGGSVRFEAQVTPRAGRQILHIAVAD 972

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             GPGIA  E   V  SF Q     ++ + G GLGL  A+ ++  H G+  ++S++ +G  
Sbjct: 973  TGPGIAPAEQKQVFESFYQARRTSENHDGGTGLGLAFAKELVKLHKGEISLQSEVGKGSV 1032

Query: 468  VIAILPN 474
                +P 
Sbjct: 1033 FSIEVPV 1039


>gi|160882577|ref|ZP_02063580.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
 gi|156112021|gb|EDO13766.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
          Length = 674

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 371 WGLHPSVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 430

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    MG    
Sbjct: 431 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---MGGSTE 483

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 484 DEQQSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 543

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
             + +           +  D + M+QVI+NLLSNA KFT   G++ +        +    
Sbjct: 544 SSDNQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKR-GKITLDFSVNEEKQMAIF 602

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 603 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWKGSIWIDPDYT 658

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 659 GGARFVFSHPL 669


>gi|4545094|gb|AAD22391.1|AF064527_1 PPH [Rhodospirillum centenum]
          Length = 884

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 148/263 (56%), Gaps = 8/263 (3%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +      A  D ++  L   K LSD+        N AKSRFLA+MSHELRTPLNAI+GF
Sbjct: 627 EIATSLRHAISDMMLRHLRHVKELSDQ----LAASNEAKSRFLANMSHELRTPLNAIIGF 682

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI-NEILDLSRIEAGRYELSESAISLI 329
           S+++     G L     ++Y+  IH SG+HLL ++ N++LDLSRIEAGR ELS  ++   
Sbjct: 683 SDLMMSGMAGTL-PPRIQDYVQSIHASGEHLLRMVVNDVLDLSRIEAGRMELSPESLDAG 741

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +  EC+ ML  RA    + +  + +  L  + AD   +RQ++LN++ NAVKFT  GGRV
Sbjct: 742 ILAAECVGMLLPRAVRGEVLLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRV 800

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V     +G G   +++D GPG+   E+ T +  F Q +     A +G GLGLPIA+S++
Sbjct: 801 DVRARALAGGGAVFTVRDTGPGMTPEEVLTAMEPFRQVAQTRA-AVEGTGLGLPIAKSLV 859

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
             H G   I +    G  V   +
Sbjct: 860 DLHAGNLAIETAPGLGTTVTIEI 882


>gi|315125665|ref|YP_004067668.1| histidine kinase response regulator hybrid protein
           [Pseudoalteromonas sp. SM9913]
 gi|315014179|gb|ADT67517.1| histidine kinase response regulator hybrid protein
           [Pseudoalteromonas sp. SM9913]
          Length = 726

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 11/270 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS---LSDETRKRAEEENLAKSRFLASMSHELRTP 263
           L K  +  L  +     L   LE  K      ++ ++ A+  N  KS+FLA+M+HELRTP
Sbjct: 150 LSKEVIAQLELRLNNKKLFMALEKQKEHNKELEKLKEAADIANNTKSKFLANMTHELRTP 209

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ IL  +E    ET      E     +  I +S  +L N++N+ILD S+IEAG+ E+  
Sbjct: 210 LHGILNLAEFAISET----TTEEKNSTLKSILKSAHYLSNIVNDILDFSKIEAGKLEIEH 265

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
              SL +++ + I  L  +A  K I++   IDP ++  +  D   + Q++ NL SNA+KF
Sbjct: 266 INFSLNEVISDVIKPLLQQASAKGIKLITSIDPKIADNLKGDPLRISQILNNLCSNAIKF 325

Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G    ++ V       +     + D G G+ E     +   F Q   +      G G
Sbjct: 326 TNFGQVELKISVKNSTLQTQVLTFEVIDTGLGVNETVQEHLFKEFHQADSSTSRKYGGTG 385

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           LGL I   +     G     SK+ +G    
Sbjct: 386 LGLSICARLSELMQGHLSFTSKIVKGSTFT 415


>gi|289550735|ref|YP_003471639.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180267|gb|ADC87512.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
          Length = 588

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     E  KE +  +      L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PEEIKESLSIVLDETNRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +     + +A + ++ ++   + + +  + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYD 478

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV+ NL+ NA ++T  G  + +T    + +   + I D G GIA   +  V   F
Sbjct: 479 SDRIDQVLTNLIDNATRYTQPGDTISIT-SEDTDKYNVLHINDTGSGIAPEHLNLVFDRF 537

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +    +QG GLGL I + I+  HGG   + S + EG      LP 
Sbjct: 538 YKVEASRTRGKQGTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase [Arsenophonus nasoniae]
          Length = 952

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A +++  SL +   + +E+ N AKS FLA++SHELRTPL  I+G  E+++   +   
Sbjct: 445 DISARVQMENSLHNMA-QASEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSYELPIQ 503

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +      +  +  S   LL +IN+ILD S+IE+ +  +  +  +  ++    I      
Sbjct: 504 AD----RLLTTMDHSSSLLLKIINDILDFSKIESKQLNIDPAPFNCREVFSFIISNYIPL 559

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K + IF  IDP +  +  AD   ++Q+I N+LSNA+KFT   G + + + +      
Sbjct: 560 IGKKGLSIFYYIDPDVPDIINADSVRVQQIISNILSNAIKFTKT-GFILLNI-FIKDFYI 617

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           YI I+D G GI +  +  +   F Q  +  +S  QG GLGLPI + ++    G   + S+
Sbjct: 618 YIEIRDTGIGIPDNILMQLFDPFFQIKVNNESFSQGTGLGLPICEKLINLMDGDIEVNSQ 677

Query: 462 LREGVEVIAILPN 474
           +  G      LP 
Sbjct: 678 VGIGSSFTVRLPL 690


>gi|238913203|ref|ZP_04657040.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 920

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 156/377 (41%), Gaps = 17/377 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL   G      L I          ++  +++            P+   + 
Sbjct: 269 LHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVD 328

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                +   L   L       L         L  +       Q + D+L  ++       
Sbjct: 329 VINKTATSPLSTRLPAQRLDELDSIAGAFNQLLDT------LQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKI 354
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +     
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHAPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIPEDNHESTQY 491
                  P +   S  +
Sbjct: 613 QEYQPPQPIEGTLSAPF 629


>gi|332142950|ref|YP_004428688.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332143005|ref|YP_004428743.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552972|gb|AEA99690.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327553027|gb|AEA99745.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 908

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K+  D+   + EE + AK +FLAS+SHELR+PLN+I+G++++     M   N +   + +
Sbjct: 515 KASLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDLAL---MDVSNVDRMTDAL 571

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I R+      LIN+ILDLSRI +G  +LS  ++++   + E     +     KNI++ 
Sbjct: 572 GVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIASSISEVAKSFEAGFASKNIQLS 631

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
              +   + +  D   ++QVI NLLSNA+KFT+ GG VHV           + +KDNG G
Sbjct: 632 ISCEDEHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNY-TLRVKDNGKG 690

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIA 470
           + + ++  V   F QG  +      G+GLGL I +S++  HGG+  + S     G     
Sbjct: 691 MTQEQVAHVFERFYQGKDSHNKH--GLGLGLSIVKSLVEMHGGEIQVHSDGPNTGTSFNI 748

Query: 471 ILPNTRVLNFIPEDNHESTQY 491
            LP   +         ++T+ 
Sbjct: 749 TLPIAPLSLHDDIVETKNTEI 769


>gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1160

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 3/285 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           + +        L ++N ++   +   D   +EL +A+    E  +  +  +  KS FLA+
Sbjct: 434 SQAHLEAQQQELEQTNEQLAEQRDAMDQKNSELNLAQIQLQERAEELQRSSKYKSEFLAN 493

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTP          +  E      +E   ++   I+ +G  LLNLIN+ILD+S++E
Sbjct: 494 MSHELRTP-LNSSLILSKLLSENPQQNLSEEQVKFAESIYSAGNDLLNLINDILDISKVE 552

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ E+     S+  +V     M +  A +K +    ++ P     ++ D + + QVI N
Sbjct: 553 AGKLEVRPENTSVQRLVEGLRDMFEPLAADKGLGFEVQVLPDAPAMLYTDRQRLEQVIKN 612

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNAVKFT   G V ++V    G G    ++D+G GIA  +  ++  +F Q        
Sbjct: 613 LLSNAVKFTEQ-GTVSLSVAGQPGSGIAFMVRDSGIGIAADQQQSIFEAFRQADGTTNRR 671

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             G GLGL I++ +    GG   + S+  +G     ++P   V  
Sbjct: 672 YGGTGLGLSISRDLATLLGGSICVSSEPGQGSVFTLVMPERYVEP 716


>gi|75762098|ref|ZP_00742003.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490416|gb|EAO53727.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 472

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 243 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 299

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L++IE   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 300 LFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 358

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 359 FEQVIVNILNNAYRHSKEHSHINISIT-DEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 417

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 418 DKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 463


>gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1314

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            R +E +  KS+F++++SHELRTPL +I  ++E +        + E    Y+  + R    
Sbjct: 1079 RLKELDRLKSQFVSNVSHELRTPLTSIKLYAEQL-----PTASAERSARYLAALQRETAR 1133

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            L  ++ ++L +SR++ G+  +  SA+ L   V++ +   ++ A  + + +  + D  L  
Sbjct: 1134 LEAMVEDLLTISRLDLGKTRIQISALPLAPFVQQIVEDRRMLAHSRGLTLHFQQDKHLPP 1193

Query: 361  VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQYISIKDNGPGIAEGEIP 418
            V  DE+ + Q++ NLL+NA+ +T  G  + ++V           ++I+D G GI   E+P
Sbjct: 1194 VAGDERFVMQIVTNLLTNAINYTPAGRNIFISVRHDPQEAGFLRLTIEDEGVGIPPEEMP 1253

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F +GS   K    G GLGL I + ++    G+  I S++ +G + I  LP 
Sbjct: 1254 HLFERFFRGSAGRKLQVPGTGLGLAIVKEMVERLNGKIHIESEVGKGTKAIVWLPV 1309


>gi|260433701|ref|ZP_05787672.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417529|gb|EEX10788.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 360

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 8/240 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A++GF E +     G  + E +  ++  +      +
Sbjct: 111 LEQARQMRRDFVANVSHELRTPLTALMGFIETLRGPAKG--DPEAHDRFLRIMADEANRM 168

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L L+R+E+         + L +++   +  L+  A    + +   +  S   +
Sbjct: 169 NRLVGDLLSLNRVESEERIRPRERVELTELLNATLSSLRPLADGAGVVLSLTVPSSPVEL 228

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEG 415
             D   +RQV  NL+ NA+K+   GG+V + V  +            + + D G GI   
Sbjct: 229 VGDNDQLRQVFTNLVENAIKYGGSGGKVDLIVTESERDAAIRGPAVRVQVIDKGLGIDPV 288

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +P +   F +          G GLGL I + I+  H G+  + S+  +G     +LP  
Sbjct: 289 HLPRLTERFYRADSHRSRELGGTGLGLAIVKHIVNRHRGRLRVESEPGKGAVFTVVLPAR 348


>gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1039

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 8/238 (3%)

Query: 243  EEE-NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E      KS F+A +SHELRTPL +I G+ +++     GPL +E ++E +  +  +   L
Sbjct: 780  ERAVERMKSEFVAMVSHELRTPLTSIKGYVDMLLDGDAGPLADE-HQELLRIVKSNADRL 838

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
            L LIN++LD+SRIEAG+  L    + L  ++R+    ++     K   +   +  +    
Sbjct: 839  LLLINDLLDMSRIEAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDG 898

Query: 361  ----VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                +  D     Q++ NLLSNA+K+T   G + + +         I+++D G G+   E
Sbjct: 899  SAPLIAGDAARFHQILTNLLSNAIKYTPPNGEMTIRLTAEPP-WLCITVQDTGIGMTPEE 957

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               +   F +          G GLGL I +S++  H G+  + S+  +G      +P 
Sbjct: 958  QDHIFDRFYRARNRATRETGGTGLGLAITRSLVELHDGRITVESQPGKGSTFRVYVPL 1015


>gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
 gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
          Length = 1112

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 148/360 (41%), Gaps = 6/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              + W L+  +           + K     +  +I  +       + F++   + +  +
Sbjct: 313 LKSIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWA 372

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S  + +S    ++    ELE    + 
Sbjct: 373 AERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELENNLLII 429

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GPL    +K  +  I 
Sbjct: 430 RKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLT-AAHKYQLDIII 488

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++ + A+ L    R  + +      +K + I  ++ 
Sbjct: 489 SSGQRLATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVS 548

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   
Sbjct: 549 EQPVWVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYI-DDKVRVQVVDTGQGIPAE 606

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 607 QLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPLA 666


>gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
 gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
          Length = 917

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E         + +AE  +  KS FLA+MSHE+RTPLNAI+GFS ++    +   + E   
Sbjct: 530 EKMAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSGLM----VNCDDPEEKA 585

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I  +   LL LIN+ILDLS+IE+G  E      +L  +  E   M+Q +     +
Sbjct: 586 EYMEIIESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKITNPEV 645

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407
           E           ++ D   ++QV +N L+NAVK T  G   H+ +G++    G  + ++D
Sbjct: 646 EFILGNSGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSG---HIKMGYSLENGGIKVYVED 702

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI       V   F +         QG GLGL I+++I+   GG+    S    G  
Sbjct: 703 SGVGIPYEVQNRVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEIGFTSTPGVGST 758

Query: 468 VIAILPNTRVLNF--IPEDNHESTQ 490
             A +P    +    +P+   +  Q
Sbjct: 759 FWAWIPCDVSMQENIVPKATPQPAQ 783


>gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 868

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 10/267 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E    +++  E RK AEE + AKS FLA +SHE+R PL+ +LG SE+     +G    
Sbjct: 342 VTERARGEAILREARKAAEEADQAKSAFLAQVSHEIRNPLSTLLGLSEL----CLGTPLQ 397

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + +I  IH++  H+L + N++LDLSR+EAG+ EL +   SL  ++R+ +  +  + +
Sbjct: 398 PRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLPQGE 457

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402
            K + +  + +P L   +  D   ++Q+++NLL+NAVKF    GRV +            
Sbjct: 458 AKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDR-GRVELRARKDPQGPWLE 516

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D G GI   ++  V   F Q S +     QG+GLGLPIA  +  + GG     S  
Sbjct: 517 LAVEDTGQGIEPEDLRRVFQPFWQASPSTS--AQGMGLGLPIALQLTRSMGGNIEASSLP 574

Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489
             G   +  LP        P  +   T
Sbjct: 575 GSGTTFLVRLPLEEA-EAEPSPSLSPT 600


>gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134]
 gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134]
          Length = 855

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + +  +++ ++           + +  +A+   +  R+ AE  + AKS FLA +SHE+RT
Sbjct: 184 VRWLSWRAVLRDDGTLYATARDVTQSRIAQLEIERARQEAEAASRAKSAFLAMISHEIRT 243

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N ++G  EV+   T+    +   +E +  +  S   LLN+I++ILD S+IEA +  + 
Sbjct: 244 PMNGVIGMIEVLTRTTL----SADQREMVATVRESAAALLNIIDDILDFSKIEADKMRIE 299

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
              +S+   V      L L A+  N+ ++  IDP L   V  D+  +RQV+ NL+ NA+K
Sbjct: 300 CVPLSIEHTVETLCASLVLLAERNNVALYLDIDPGLPAQVLGDDLRLRQVLYNLVGNAIK 359

Query: 382 FTA---IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           F+     GGRV++ +    G      I+DNG G+    + T+   F Q          G 
Sbjct: 360 FSGGALPGGRVYLRIAPAGGDVVRFEIEDNGIGMPPDAMATLFQPFVQAETTTTRRFGGT 419

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GLGL I + +    GG     S+   G      LP       +P    
Sbjct: 420 GLGLAICRRLTELMGGSIAAASQPGAGATFTVCLPLRAAEAPLPRPTP 467


>gi|229048377|ref|ZP_04193945.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
 gi|229147237|ref|ZP_04275594.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228636246|gb|EEK92719.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228723102|gb|EEL74479.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
          Length = 484

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  ++    
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SNNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|172065526|ref|YP_001816238.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997768|gb|ACB68685.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 730

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L  E R      N AK +FLA + HELR PL  I  
Sbjct: 316 SAVEVTEHVAAREKLVAANAERDRLLGELRD----ANQAKDQFLAVLGHELRNPLTPISL 371

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     I  I R   H++ LI+++LD+SRI  G+  L + ++ L 
Sbjct: 372 ALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRLA 426

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +    DP  +    D   + QV+ NLL+NA K+T  GG +
Sbjct: 427 DIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKYTMPGGDI 485

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V     +     I + DNG GI    + ++   F +     K A  G+G+GL + +S++
Sbjct: 486 TVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGLALVRSLV 545

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476
             HGG     S     G      LP  R
Sbjct: 546 NLHGGTVRADSAGPGCGSTFTIALPEYR 573


>gi|228986322|ref|ZP_04146459.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773349|gb|EEM21778.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 448

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDAIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|89902539|ref|YP_525010.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89347276|gb|ABD71479.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 920

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 169/407 (41%), Gaps = 8/407 (1%)

Query: 69  NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
                 WSL+        LSL +    S  +  +  ++         +  + W     V 
Sbjct: 505 LTHSLFWSLLVNVAAYVGLSLWR--APSGPEASQALLFVDVFRRTASSSPVFWRGQARVP 562

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                 E     + A  L       +        +      V    +  A          
Sbjct: 563 DLLRLCERFMGVQKARALFRSYAGPVEA-RQMDTIRADARLVQFVETQLAGAVGSASARV 621

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L   +             +     ++ +   E ++    LE A +   +  ++ +  +  
Sbjct: 622 LVASVVEEEPLTPEDVLRILDEASQLRAHSRELEEKSDSLERATAELRQANEQLKSLDRL 681

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  F++S++HELRTPL +I   +E++  +    L     +++I  I    + L  L+N++
Sbjct: 682 KDDFMSSVTHELRTPLTSIRALAELLRDDPRIAL--AQRRQFIEIIVSETERLSRLVNQV 739

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+++IE+G  E   + + +  +V + +       +E+ I +   +   + ++ AD   +
Sbjct: 740 LDMAKIESGHAEWHTAEVDMRALVSQAVSTTAELFRERQIAVEVALPEQVPTLMADPDRL 799

Query: 369 RQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
            QV+LNLLSNA KF    GGRV V++  +   G  +++ DNGPG+A  +   +   F QG
Sbjct: 800 MQVMLNLLSNAAKFVPLPGGRVRVSLS-SDDSGVTVAVSDNGPGVAAEQQALIFDRFRQG 858

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             A     QG GLGLPI++ I+ + GG+  + S L++G   +  LP 
Sbjct: 859 GDAANRP-QGTGLGLPISRQIVEHFGGRLWLESGLQQGARFLFHLPR 904


>gi|83952587|ref|ZP_00961318.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
 gi|83836260|gb|EAP75558.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
          Length = 594

 Score =  255 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 158/446 (35%), Gaps = 26/446 (5%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSL--ITLAVYAANLSLGKKVMNSDIKIGEVYVW---- 106
           PLF  + A +  +   +    +++    T+A+      L               VW    
Sbjct: 151 PLFYAVAAGLYVFVLSSLGVLLYAFHRATVAIRPFLGVLLVITAAPLSANFAYIVWGFTV 210

Query: 107 ----RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFML 159
                   +     +   W L       T       I+ +     L+             
Sbjct: 211 FGFDPTPFMFTAALLAFSWLLTNNTMMDTEAQGRSLIFYATSDPVLITDSEFRFTGANPA 270

Query: 160 PYAVFLSFFP----------VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
              +F    P           +  +             +   +                +
Sbjct: 271 ATEIFGPLLPKPGGSLRSLLALAPILNTLDRDQSTARGAPVPLADRIFEPRILPIESPIR 330

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +   +L       D I E E +     E   RAE  N AKS+F+A +SHELRTP+ ++ G
Sbjct: 331 TRRNLLGWTISLVD-ITEREHSAQALREALVRAEAANHAKSQFIAMISHELRTPMTSVKG 389

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             ++      G   +E  ++ +    R+   +L LI+++LDL +++     L   A+ + 
Sbjct: 390 GLDLALNGFPG-EPSEPIRKLLNIAQRNSMRMLKLIDDVLDLQKLDLNTLRLHPVALDMD 448

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +++   +     +A +  + +    D     V  D   +RQV+ N++SNA+KF+  G  V
Sbjct: 449 ELLANLLEEHAGQADQAKVRLTIVSDKIGQQVHVDPNRVRQVVGNVISNAIKFSPEGAHV 508

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            ++V         +S++D+G GI       V   F Q    +     G GLG+ IA+ ++
Sbjct: 509 DLSVQLKPE-ALRLSVRDSGIGIPAKSEDRVFGRFHQIESDLTPTHGGSGLGMHIAKVLI 567

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475
              GG     S L +G      LP  
Sbjct: 568 ERMGGAISYESVLGQGTVFHIDLPLA 593


>gi|310780117|ref|YP_003968449.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749440|gb|ADO84101.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 630

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 10/255 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             +L   +E   +     ++ AE  N +K+ FLA +SHE+RTPL  I+G+S +++   + 
Sbjct: 137 NKNLEQMVEKRTTQLKSAKEHAEAANRSKNEFLAKISHEMRTPLTPIIGYSRMLKKSELS 196

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E     +  IH SG  LLN  NE+LD S+IEAG  EL+     +    +E      
Sbjct: 197 DYTKEK----LETIHNSGVKLLNFTNELLDFSKIEAGTVELNFEPFGIKKFFKEIYNEHC 252

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            +A+EKNI+   ++  +   +++D+  + +V+ NL+ NA+K+T  G    +         
Sbjct: 253 EKAEEKNIQFQIELPQNDIIIYSDKMKLYEVVKNLVHNAIKYTKKGS--VLCTVEIRDSL 310

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+G GI++  I  +  SFGQ    I     G GLGL I + ++    G   + S
Sbjct: 311 LCFDVYDSGIGISDKNINYIFESFGQ----INKQSAGAGLGLSITKRLIEILKGDIKVES 366

Query: 461 KLREGVEVIAILPNT 475
           KL  G      +P  
Sbjct: 367 KLGIGTTFNVSIPIE 381


>gi|190574099|ref|YP_001971944.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
 gi|190012021|emb|CAQ45643.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
          Length = 1033

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 143/329 (43%), Gaps = 17/329 (5%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A+  S     + +  +          +    L  A       +  L +S   +   QAE 
Sbjct: 264 ALRASLLRAQLVVLLEESQRQGEELQAQQEELRVANEELEEQSRSLLQSQSHLEEQQAEL 323

Query: 222 DDLIAELEVAKSLSDETRKRAEEE--------------NLAKSRFLASMSHELRTPLNAI 267
           +    +LE      +  ++                   +  KS FLA+MSHELRTPLN+ 
Sbjct: 324 EQSNVQLEERTHELEAQKQALLVAQSQLVRNSNELAATSRYKSEFLANMSHELRTPLNSS 383

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           L  ++++     G L  E  K Y   I  S   LL LIN+ILDLSRIEAG  EL++  + 
Sbjct: 384 LILAKLLADNKDGTLTEEQVK-YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVV 442

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
              +++      +  A++K + +  + D      +  D + ++Q++ NLL+NAVKFT   
Sbjct: 443 TDSVLQRLRETFEPMARQKGLALQIEADALAPSQLVVDSQRLQQILKNLLANAVKFT-EH 501

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G+V + V           + D+G GIA  ++  +  +F Q   + +    G GLGL I++
Sbjct: 502 GKVSLHVRAAGQGRIRFEVCDSGIGIAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISR 561

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +    GG   + S+   G   I  LP  
Sbjct: 562 DLAERMGGSIQVDSEPGRGSCFILELPLQ 590


>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
 gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
          Length = 977

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 159/458 (34%), Gaps = 20/458 (4%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
             +    V        +L +    V  +    T +    ++           ++L +   
Sbjct: 249 ARVGRPAVRRRHTARMLLAILPAAVPPVAHLVTHHDQRALYVPYLGMGVLLLITLLRVGR 308

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
               +              +    L    +  +       + +         +  S    
Sbjct: 309 LLASEDAAHAELARSH---EYLQALADNSVDAILVVDERLDIVFSSSGVQEYLGPSPRRG 365

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
                 +A               A        I     L              F + +  
Sbjct: 366 LPA---WAEAAGLRLHDGLEDALARTVAAPDAIVQEEFLLVPEHEKPRWILARFVNLLHD 422

Query: 215 LSCQAEKDDLIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            + +     L    E  +   +    R  A   + AKS FLA+MSHE+RTPLN +LG +E
Sbjct: 423 PAVRGIVISLSDSTERKEMELELGRARDAALAGSRAKSTFLATMSHEIRTPLNGVLGLTE 482

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++    +    +     Y   I  +G+ LL +IN+ILD S+IEAGR EL E  + +  ++
Sbjct: 483 LMLTTRL----DGQQGRYAEGIRVAGEALLQVINDILDFSKIEAGRLELEEVDLDVARLL 538

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            E   M+   AQEK + +  +  P +   +  D   +RQV+LNL SNA+KFT   G V +
Sbjct: 539 DETARMVAGPAQEKGLALVVRCSPEVPPGLRGDAVRLRQVLLNLTSNAIKFTRT-GEVVL 597

Query: 392 TVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           +                 + D G GI   +   +  +F Q          G GLGL I++
Sbjct: 598 SAQLERAPVADVASVRFEVADTGIGIDPAQREHLFDAFTQADSTTTRRFGGTGLGLAISR 657

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            ++   GG   +  +   G     ++P   V    P+ 
Sbjct: 658 QLVTAMGGAIGVEPRSGPGSRFWVVVPL-PVRAGQPQA 694


>gi|260170735|ref|ZP_05757147.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919071|ref|ZP_07915311.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692946|gb|EFS29781.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 642

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 339 WGLHPSVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 398

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    MG    
Sbjct: 399 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---MGGSTE 451

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 452 DEQQSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 511

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
             + +           +  D + M+QVI+NLLSNA KFT   G++ +        +    
Sbjct: 512 SSDNQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKR-GKITLDFSVNEEKQMAIF 570

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 571 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWRGSIWIDPDYT 626

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 627 GGARFVFSHPL 637


>gi|21283174|ref|NP_646262.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486329|ref|YP_043550.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87162310|ref|YP_494137.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|262049078|ref|ZP_06021955.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
 gi|21204614|dbj|BAB95310.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49244772|emb|CAG43208.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87128284|gb|ABD22798.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|259162747|gb|EEW47312.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
          Length = 588

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 478 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 537 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|209808886|ref|YP_002264424.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
 gi|208010448|emb|CAQ80807.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
          Length = 818

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 36/322 (11%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
           +      VL + +  ++ + L     +T  L                   E  + +S + 
Sbjct: 275 RFFFYSQVLSVVIFLLIVSVLIAVVVMTSRL-------------------EKRILRSQNQ 315

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E +      N AKS FLA+MSHE+RTPLN I+G +E++ + T+  +     K+Y+  I+ 
Sbjct: 316 EIK-----ANKAKSSFLANMSHEIRTPLNGIIGMTEILSVSTLTAI----QKDYLATINA 366

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S Q LL LIN++LDLS+IE+G  E++  +  + +++ +   ++  +AQ+K + I   +  
Sbjct: 367 SSQTLLMLINDVLDLSKIESGNIEVNTHSCKIKEVIFDTAALIAPKAQQKGVNIKIIMSE 426

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPG 411
           +  + V ADE+ +RQV++NL SNA+KFT   G +   +            + S+KD G G
Sbjct: 427 NFPTYVKADEQKIRQVLMNLASNAIKFTEA-GSISFELSLIEETDTSYRYFFSVKDTGLG 485

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E +   V   F Q          G GLGL I+  ++   G +  ++S    G E    
Sbjct: 486 IEESKHEQVFEEFKQEDDDTSKNYGGTGLGLAISSKMIKMMGNEIKLKSSKGVGSEFYFS 545

Query: 472 LPNTRVLNFIPEDNHESTQYKC 493
           L      +  PE   +S + K 
Sbjct: 546 L--ELDKDHTPEKASKSRKNKT 565


>gi|188591971|ref|YP_001796569.1| multi-site sensor histidine kinase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938345|emb|CAP63330.1| putative multi-site Sensor histidine kinase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1478

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 131/320 (40%), Gaps = 9/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            +      S F V +      +       I +A   + +      +  + F+        
Sbjct: 283 TVLLDDLASRFAVPLPGGAWGVPPSSAAVIEVAPSGSASHRGVLVVGLNPFRLFDARYRS 342

Query: 218 QAEKDDLIAELEVAKSLSDET-RKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV 273
                       +  +L+ E  RKRAE     + AK+ F +++SHE RTPL  +LG  E 
Sbjct: 343 FLSLAAGQIGAAMQSALAYEAERKRAEALAEIDRAKTAFFSNISHEFRTPLTLMLGPLED 402

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +        +    +  +   HR+G  LL L+N +LD SRIE+GR  +     ++  +  
Sbjct: 403 LVRRASPGED----RAMLEMTHRNGLRLLKLVNALLDFSRIESGRVTMRRQPTNVAALTA 458

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   + +   +   I +     P    V  D      ++LNL+SNA KFT   G + V V
Sbjct: 459 DLASLFRASVEAAGITLRVDCPPLARPVAVDRDMWETIVLNLVSNAFKFTFA-GAITVAV 517

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                 G  ++++D G GI   E+P +   F +   A     +G G+GL + Q ++   G
Sbjct: 518 APHGDGGVALTVRDTGVGIPAAELPRIFERFHRVEGAQGRTIEGSGIGLALVQELVRLQG 577

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G   ++S   EG      LP
Sbjct: 578 GTIDVQSVPGEGTCFTVRLP 597



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 97/281 (34%), Gaps = 34/281 (12%)

Query: 233  SLSDETRKRAEEENL--AKSRFLAS----MSHELRTPLNAILGFSEVIELETMGPL-NNE 285
              +    + A+       K   + +    ++H+    L  I G  +++  +  G      
Sbjct: 928  REAQAALRHADAALRTAQKMEAIGNLTGGVAHDFNNLLQVIGGNLQLLARDLAGDDRAEP 987

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +  +  + R  +    L +++L   R    R  L+   ++L  +VR    ML+ RA  
Sbjct: 988  RLRNALAGVARGAK----LASQLLAFGR----RQPLAPRVVNLGRLVRTLDDMLR-RALG 1038

Query: 346  KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----- 400
              IEI   + P+L +   D   +   +LNL  NA       GR+ +              
Sbjct: 1039 DGIEIETVVAPNLWNTLVDPFQVENALLNLAINARDAMQGHGRLTIAARNALPGEAADEP 1098

Query: 401  --------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      +S+ D G G+       V   F       K   QG GLGL +    +   
Sbjct: 1099 AGAGPMQYVLLSVTDTGVGMPPEVQEHVFEPFF----TTKPEGQGTGLGLSMVYGFIRQS 1154

Query: 453  GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
             G   I S+   G  V   LP  R  +  P+   ++   + 
Sbjct: 1155 DGHVKIFSEPGHGTTVTLFLPRVR-RDEDPDIEPDAGPARG 1194


>gi|120602021|ref|YP_966421.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562250|gb|ABM27994.1| Cache sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 733

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 21/332 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F         F+ VV      AI         +A ++   + F    +  L ++  + ++
Sbjct: 250 FSYRKVGHHPFWVVVGLALDDAIQPWFRNAAYVAVIVVAFVVFTALSSRSLRRALQQEVA 309

Query: 217 CQAEKDDLIAELEVAKSL-----------SDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +    ELE   +              E +++A+  N AKS FLA+MSHE+RTPLN
Sbjct: 310 ARNAVERARNELETRVAERTALLEDSNLHLREAKEKADNANAAKSAFLANMSHEIRTPLN 369

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG  +++E   +         EY+G   RSG+ L +L+ +ILDLSRIEAG+  L+E  
Sbjct: 370 GLLGMLDLLEATGLDAG----QAEYLGMARRSGRRLTDLLGDILDLSRIEAGKLVLAEQP 425

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +L D++          ++EK + +   +D        D   +RQ++LNL+ NA+KFT  
Sbjct: 426 FTLSDVLASIRETFAPLSREKGLPLEFALDAVPGPFLGDAVRVRQILLNLVGNAMKFTNR 485

Query: 386 GGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G+V + V                + D+G GI E ++ ++   F Q    +    QGVGL
Sbjct: 486 -GQVKLEVKTLLPMPDGRARILFMVHDSGCGIPEEQVGSICEPFTQVEAPLTKRYQGVGL 544

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I ++++  + G   + S++  G  V   L
Sbjct: 545 GLAITRTLVHAYDGTLTVDSQVGVGTSVYLTL 576


>gi|52842360|ref|YP_096159.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|19880987|gb|AAM00615.1| response regulator TutC-like protein [Legionella pneumophila]
 gi|52629471|gb|AAU28212.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 816

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 4/260 (1%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      E++ A    +E  K     +  K++F A++SHELRTPL  IL   E++ 
Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILDPLEMLL 221

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P      +  +  I  + Q LL  +N++L++S+++AG+  L  + I L+ ++++ 
Sbjct: 222 AEKKLPS---FVQNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I + + +  E+ +     +   L     D   ++ V++N+LSNA+KFT    +V + +  
Sbjct: 279 IALFEAQIPERKLVFSMDLPDEL-QAQIDPDKIQHVLINILSNAIKFTPQNAKVRIRLVQ 337

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +     + I+DNGPGI      T+   F Q   +      G GLGL IA+  +  HGG 
Sbjct: 338 INPETCRLQIEDNGPGIPSDLCETIFERFFQIEESTTRTVGGTGLGLSIAKDFVELHGGS 397

Query: 456 FLIRSKLREGVEVIAILPNT 475
            L  +    G      LP  
Sbjct: 398 ILAGNARNGGAIFTIELPLK 417



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
                 +F+   SH+L+ PL A+      I  E +G + +E  K+Y+  + +    +  L
Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++ +L  +  ++G        I    ++ + I  L          +  +++ +L  +   
Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700

Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           E  +R+V   LL N+++      G + +       R     + D+GPGI +     +   
Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F       K      G+GL IA+ I+   GG+  + S+  +G     + P  +
Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810


>gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 622

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 372 MIDDQERLEFEEDLISAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 427

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 428 EDLELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQL 487

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-G 400
           R + + +EI     P +     D   + Q+ +NLL+NAVK T   G +            
Sbjct: 488 R-KPEGVEITLDACPDII-FNIDRNRLWQICMNLLTNAVKHTKK-GSIWFGYTLEDEGKM 544

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGLGL I + ++   GG   + S
Sbjct: 545 VKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLGLAICKGLVLKMGGNISVMS 600

Query: 461 KLREGVEVIAILPNTR 476
           K   G   I  LP  R
Sbjct: 601 KEGFGSTFIFTLPMKR 616


>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 838

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/462 (21%), Positives = 166/462 (35%), Gaps = 16/462 (3%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           I      +          +  +         R   I        A       +   F + 
Sbjct: 122 IETANTQVMTPQRRPAQTEESLDK--TRYQIRHQLIEMQAASAPAIKFKPTKEGQNFLLG 179

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL--VGQIAIGLCWTLLTLVEPGTWT 133
               + +  A+  L +K  +   K  E    +  LL  +          +        + 
Sbjct: 180 LCAAIVLIIASRVLQRKEQHETRKAVEALQGKSILLDTILNSMSEALIVVDQNGWFTHYN 239

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
                I  S    I+   S         A    F    + L                   
Sbjct: 240 AAAQRIIGSKIKEISTDSSVEQLGFFNQAEGRPFTRKELPLYRALSGDRVDDLEIFVQNS 299

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                 +  ++          +S        I+  ++ +      R+ A E +  KS FL
Sbjct: 300 EHPEGIYISLSSRPLNDIDGGISGALIVFKDISRRKMVEQEWIRAREAALEASQKKSDFL 359

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+N ++G + ++    +    N    +Y+G+I RS + LL LIN++LD S+
Sbjct: 360 AAMSHEIRTPMNGVIGMTTLLADTHL----NPEQTDYVGNIKRSAESLLMLINDLLDHSK 415

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVI 372
           IEAG+  L    + L  +V + + M +    EKNI +  + D  +L    AD   +RQ++
Sbjct: 416 IEAGKIRLDPQPLDLQFLVEDVLEMFKPTVAEKNIGLECRFDGKNLWHYRADAGRLRQIL 475

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +NL+ NAVKFT   G V + V     +         +KD G G+ E E  ++   + Q  
Sbjct: 476 VNLMGNAVKFTEK-GFVRLEVSSRGDKDGKTALLFEVKDTGQGLQEHEKRSLFQKYFQAK 534

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             +     G GLGL I + ++   GG   + S    G     
Sbjct: 535 AGM--KFGGTGLGLSICKQLVDLMGGDIGVESVPGVGSNFWF 574


>gi|300214839|gb|ADJ79255.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 461

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL A+ EV K   D               F+ ++SHE++TP+ AI GFSE +    +  
Sbjct: 224 RDLTAQKEVEKKQLD---------------FVGNLSHEIKTPITAITGFSETLLDGALD- 267

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRI-EAGRYELSESAISLIDIVRECIIMLQ 340
            + E  K++I  IH     L NL+++++ +SR+ E G   L+   +++  +V++ + +  
Sbjct: 268 -DKEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFS 324

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++K + +  +ID  L S++ D+  ++ +I NL+ NA+++    G + + V       
Sbjct: 325 HEIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNE 383

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I D G GI++ +   +   F +   +      G GLGL + +  +    G+  ++S
Sbjct: 384 WVFVISDTGIGISDEDKERIFERFYRVDKSHSKTVGGTGLGLAVVRKSVDALSGRIKVKS 443

Query: 461 KLREGVEVIAILPN 474
           ++ EG     ILP 
Sbjct: 444 QINEGTTFYVILPR 457


>gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 720

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           +N+       EK    AE E  +S  +  + R  E +  KS FLA+MSHE+RTPLNAI+G
Sbjct: 467 TNITEEKLLEEKLHH-AEYETRQSELEIQKVR--EADKLKSAFLANMSHEIRTPLNAIIG 523

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           FS ++              E++  I+++   LL LI +ILD S+IE+G  + S +  SL 
Sbjct: 524 FSNILAETDDKEEKE----EFVKIINKNSDLLLRLITDILDFSKIESGILDYSLADTSLK 579

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +I  E   +  L+  EK   I          +  D K + QVI NL+SNA KFT   G +
Sbjct: 580 EIFHEQYQVHALKMPEKVSLICDFDALPDILIHTDPKRVTQVISNLISNAAKFTEE-GSI 638

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             +          I + D G GI+     ++   F +    I S +QG GLGL I ++I+
Sbjct: 639 SFSYRIVE-GYVLIEVIDTGIGISLQHQQSIFDRFVK----INSFKQGTGLGLTICKTII 693

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
               G   + S+  EG      LP
Sbjct: 694 EALNGTIGVDSRPGEGARFWFTLP 717


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 152/413 (36%), Gaps = 23/413 (5%)

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
            L + + + +   +           +   +A         L    T     LT+  S   
Sbjct: 167 RLRVLRDLASRVAQQRTTADVLS-AVQASLAEEAHDVPFALTFLATGPQGALTLASSFGG 225

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
                   L+   +    F +  P ++                 A               
Sbjct: 226 AHGWDAQTLAQHDVITEAFSAQAPCLLPDLAGVGPLQGGPWDRPATQALAVPLAAQGQER 285

Query: 206 HLFKSNVKILSCQAEKDD-----------LIAELEVAKSLSDETRKRAE---EENLAKSR 251
                 + +   Q   D            + A +  A + + E R RAE   E + AK+ 
Sbjct: 286 PTGIMLIGLNPYQPLNDAYQGFLTLFVGQVAAGIASANAYAQE-RARAEALAELDRAKTT 344

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F +++SHE RTPL  +LG  E +             +  +   HR+   LL L+N +LD 
Sbjct: 345 FFSNVSHEFRTPLTLMLGPLEELLN---DADVTPAQRRELDVTHRNALRLLKLVNTMLDF 401

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           +RIEAGR E +  A  L  +  +     +   +   ++      P   + + D     +V
Sbjct: 402 TRIEAGRAEATFQATDLAALTADLASAFRSLVEGAGLQFEVTCPPLSEAAYVDHGLWEKV 461

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +LNLLSNA KFT   GR+ VT+         + + D+G GI   ++P V   F +   A 
Sbjct: 462 VLNLLSNAFKFTFE-GRIRVTL-REDEGHFTLQVTDSGTGIPAADLPRVFERFHRVEGAR 519

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             + +G G+GL + + ++  HGG   + S++  G      LP  +    +P D
Sbjct: 520 GRSFEGTGIGLALVRELVTLHGGDIRVDSEVGVGTTFTVTLPKGKA--HLPAD 570



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 110/288 (38%), Gaps = 9/288 (3%)

Query: 187  ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            + + G +         +          +L   A    L  E   + +   E   + E  N
Sbjct: 1059 VMVHGEVYGIFGVALRVHRTWGPGERAVLETVARSLGLAVERAQSLADLAERTHQLERSN 1118

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
                +F    SH+L+ PL  I  F+ ++     G L++    +YI     + + L  LI 
Sbjct: 1119 RELEQFAYVASHDLQEPLRTIGSFTNLLARRYAGQLDD-RADQYINFTLSATERLKRLIQ 1177

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            ++L  SR    +   + + +   ++VR+ I  L                 +L SV    +
Sbjct: 1178 DLLAYSR--TRQPVDAFTHVDTAEVVRDVIADLGDLRDRTG---GVVDAQALPSVHGSPE 1232

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             +R V  NL+ NA+KF       HV V            ++DNG GI       +   F 
Sbjct: 1233 LLRHVFQNLIGNALKFHHPDRAPHVRVRAVRVPGAWQFDVQDNGVGIEPAYHARIFGIFQ 1292

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +     +   +G G+GL I +SI+  HGGQ ++ S   +G      LP
Sbjct: 1293 RLHAVGER--EGNGIGLAIVKSIVERHGGQVMVHSTPDQGSTFSFTLP 1338


>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
           borkumensis SK2]
          Length = 867

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 8/245 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A  E+ AKS FLA MSHE+RTPLN ++G +E++         +   +EYI  I  +G+ L
Sbjct: 363 ARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRET----DPSPRQQEYISLIDSAGRTL 418

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
             LIN++LD ++IEAG+ EL E    L  ++ EC+ M  L A +    +   +DP   S 
Sbjct: 419 TALINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSD 478

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEI 417
           V  D   +RQ+++NL+ NAVKFT  G  V   V             S+ D G G+++ E 
Sbjct: 479 VVGDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVEQ 538

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q S        G GLGL I++ ++   GG+  + S   +G      +     
Sbjct: 539 AQLFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSAPGQGSRFSFSIQMASD 598

Query: 478 LNFIP 482
              +P
Sbjct: 599 QETVP 603


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 131/272 (48%), Gaps = 14/272 (5%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + +  +      R+ AE+   AK  F A+MSHE+RTP+NAI+G  E +    +    N
Sbjct: 837  ITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVGMGEQLAKSAL----N 892

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +   +YI  I  S  HL+ +I +ILDLS++EAG+  +        +I+     M++ +A+
Sbjct: 893  DQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPKNIIEHTFEMMKAKAE 952

Query: 345  EKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSG 398
             K ++       S     +  D   + Q++LNLLSNA+KFT   G+V +         S 
Sbjct: 953  SKGLDYSILNYDSRINEVLIGDPIRISQILLNLLSNAIKFTEK-GKVVLQCHSISETESH 1011

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
            +    S+ D G G+ +  + +    + Q    I     G GLGL I++ ++   GGQ  I
Sbjct: 1012 QEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLSISKELVQLMGGQMKI 1071

Query: 459  RSKLREGVEVIA--ILPNTRVLNFIPEDNHES 488
             S+   G  V     LP  +  + +P ++  S
Sbjct: 1072 ESQKGLGTIVSVNFKLPKGQ-ESDLPVEDSSS 1102


>gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15]
          Length = 597

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 185/450 (41%), Gaps = 18/450 (4%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
               +    D+        +L  +   +     L   +       P+  +   + L    
Sbjct: 120 APVAAASTQDQPKRLAEGAALALIGACVAALTQLSG-LAPAAPTGPLAFVLGFLALVTTG 178

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L+ G  +        +       + +  +  GL    + +        +         
Sbjct: 179 LGLAAGLLIGRRRQGARDDRYASEIIGLETLLDGLPHLAIAV------RGQGQVTAVRGA 232

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
               ++ + L N  L  A        + A   QA             +    +       
Sbjct: 233 APPGVTRADLVNRGLTGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVAL---- 288

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                 +    +        I      +   D+ R  AE     ++RFLA+MSHELRTPL
Sbjct: 289 ----DMHRVAPNQLVGVLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPL 344

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++     GPL++  Y EY   IH SG HLL+LIN++LD+S+IEA R+EL   
Sbjct: 345 NAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRG 403

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                + V+  + +L++++    +++   + P    V AD + ++Q++LNL+SNA+KFT 
Sbjct: 404 VFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTP 463

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V VT          I + D G GI+  ++  +   + Q   A + A +G GLGL +
Sbjct: 464 RGGQVTVTAHGY-DGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRA-RGTGLGLSL 521

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++     GG+ +I S+L  G  V   LP 
Sbjct: 522 VRAFAQLLGGEMVIESRLGAGTTVSVRLPV 551


>gi|78224572|ref|YP_386319.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195827|gb|ABB33594.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 470

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 145/343 (42%), Gaps = 11/343 (3%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
           T  Y  +     L I    +++          L  F V + L+             LAG 
Sbjct: 136 TITYPIMDNGRLLQIVQVGTSMRAAAETLDKVLVVFAVSIPLALILWSVGG---WFLAGR 192

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
               + F   IT    K   + L  + E  +   E+       ++T +R E+      +F
Sbjct: 193 ALKPVDF---ITRSAQKITAENLGLRLEVVNPQDEIGRLAITFNDTLERLEDAFRRVKQF 249

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
              +SHELRTPL  + G +EV           E ++E           +  +I  +L+LS
Sbjct: 250 TGDVSHELRTPLTILRGETEV---GLRWAREPEEFRELFRSNLEEINRMSKIIEALLELS 306

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R E G  +L    I L D++ E +   +L   EK ++I      +  +V  D   +RQV 
Sbjct: 307 RAEEGGLKLERVPIELEDLLGELVQQSRLIDPEKGLKIAFS-AVTPVTVTGDWLRLRQVF 365

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NLL NAV +T  GG V V +   SG    +++ D+G GI   ++P +   F +   A  
Sbjct: 366 MNLLDNAVTYTPAGGEVSVVLDA-SGGFARVTVIDSGVGIPADDLPHIFERFYRVDKARN 424

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            A+ G GLGL + ++I   HGG+  + S++ +G      LP  
Sbjct: 425 RADGGCGLGLSLVRTITEAHGGKIDVVSEVGKGSVFTVYLPLQ 467


>gi|73662570|ref|YP_301351.1| respiratory response protein SrrB [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495085|dbj|BAE18406.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 593

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 3/231 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K  F+A++SHELRTP++ + G++E I    +         E +  +    + L  L+
Sbjct: 364 DQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PAEIHESLSIVLDETKRLNRLV 421

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           NE+L+++R++A    + +    +  ++ +     Q  A++  + +    +      + D 
Sbjct: 422 NELLNVARMDAEGLTVKKVVQPIDHLLDKVQQKYQKHAKDLGLNMNLSPNTHNQMWYYDS 481

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+ NL+ NA ++T  G  + +  G T      + I D G GIA   +  V   F 
Sbjct: 482 DRIEQVLTNLIDNASRYTEPGDEIKIEFGETQTENI-LYISDTGSGIAPEHLQQVFDRFY 540

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A K  +QG GLGL I + I+  HGG   ++S L +G   I  LP  +
Sbjct: 541 KVDTARKRGKQGTGLGLFICRMIIHEHGGTIDVKSTLGKGTTFIITLPKPK 591


>gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46]
 gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 626

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E    + +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 372 EDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 427

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 428 DVEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQK 487

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFT+  G + +    T      
Sbjct: 488 NQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSE-GSITLGYRLTRQKDEL 546

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      +  +G GLGL I + I+   GG   + ++
Sbjct: 547 YFFVKDTGIGIPADQAGKVFERFVKL----NTFVKGTGLGLAICRVIIERLGGTIGVETR 602

Query: 462 LREGVEVIAILPNTRVL 478
             +G      LP    +
Sbjct: 603 EGKGSCFWFRLPVREDM 619


>gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 631

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 222 TEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 281

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 + Y + +  I  S +    LI+++LDLS +  G+ +L   ++ L++ VRE +  
Sbjct: 282 ---EEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNT 338

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +     P+   V  D   ++QV+ NLLSNA+KFT   GR+ V +     
Sbjct: 339 QELAAEGKDQVLELHAPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER-DD 397

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 398 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 457

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 458 TSGGRGKGATFTVRLP 473


>gi|167842316|ref|ZP_02469000.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           thailandensis MSMB43]
          Length = 809

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 160/435 (36%), Gaps = 34/435 (7%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L +    T   +       + +        +     + +  I    +           ++
Sbjct: 19  LYIVQWRTMLAELDAPLATTSLVSVGIIVMIWTFLLLFDHRIFRPMLTRSVRVFESEHLS 78

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
             L  T    +           I   A               L  AV      +   L  
Sbjct: 79  RTLIETAPVGLALIDLHSATPLIRSLAM------------TDLESAVDAPTPDLAKMLVA 126

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-----------DDLI 225
           + +       I         +     +     +  +  L     +            D+ 
Sbjct: 127 RYVRRQKKRPIVGRLARNRVIHDTLTLARRDGRDTIAALRLTQARYQGKDVLVVALTDVT 186

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           AE E+ + +  E R+ AE  N AKS FLA+ SHE+RTPL+ ILG  E++    +      
Sbjct: 187 AERELQRKML-EARRAAESANAAKSAFLAATSHEIRTPLHGILGNLELLGRTPLSI---- 241

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + +  + ++G+HL+ LIN+ILD +RIE+G          + D+    +++    A E
Sbjct: 242 DQLDRLNLVRQTGKHLVALINDILDFTRIESGEMWYERIPFDVFDVAERSLMLAAPSALE 301

Query: 346 KNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRG 400
           K++ +  ++  + + +   D   + Q++ NLLSNA+KFT   G++ +T+         + 
Sbjct: 302 KSLALLCELRITNARMLIGDPNRIEQILRNLLSNAIKFTHT-GKITLTLEVVHAEPESQD 360

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +S+ D G GI+  +   V  +F Q    I     G GLGL + +       G   +RS
Sbjct: 361 LVLSVTDTGIGISPEQQAHVFEAFRQADETIARRYGGTGLGLSLCKRFAEGMHGTLTLRS 420

Query: 461 KLREGVEVIAILPNT 475
               G      +P +
Sbjct: 421 TPDIGSRFTVRIPLS 435


>gi|229152870|ref|ZP_04281053.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
 gi|228630690|gb|EEK87336.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
          Length = 484

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ V V  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|218231212|ref|YP_002369468.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218159169|gb|ACK59161.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 484

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ V V  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|291537720|emb|CBL10832.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 855

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 130/261 (49%), Gaps = 14/261 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +++ ++AE+ N+AK+ FL  MSH++RTP+N I G  ++         N +  +E +
Sbjct: 451 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICR---YYIGNPKKQEECL 507

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   L+ L+N++LD++++E+G+ +L E   S+ +I++E   ++ + A E+ I + 
Sbjct: 508 DKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITLT 567

Query: 352 QKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISI--K 406
            K  + +  ++      +RQ++ N+ SNAVK+    G+V +                   
Sbjct: 568 VKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVCT 627

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G++          F Q + + +++  G GLGL I + ++    G     S+  +G 
Sbjct: 628 DNGIGMSPKFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKGT 687

Query: 467 EVIAILPNTRVLNFIPEDNHE 487
               ++P       +P+D+ E
Sbjct: 688 RFTLVIPF------LPDDSIE 702


>gi|228963748|ref|ZP_04124889.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795893|gb|EEM43360.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 464

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 235 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 291

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L++IE   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 292 LFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLL-VNLDEQR 350

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 351 FEQVIVNILNNAYRHSKEHSHINISIT-DEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 409

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 410 DKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455


>gi|196031953|ref|ZP_03099367.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994704|gb|EDX58658.1| sensor histidine kinase [Bacillus cereus W]
          Length = 458

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTSATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
 gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
          Length = 946

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 10/262 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +     A + N A+  FL +MSH++RTPLNAI+GF+++         N E  ++Y+  I
Sbjct: 556 LENALTIARQANRARGVFLRNMSHDIRTPLNAIIGFAKLAMK---SEGNFEQIQDYLSKI 612

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG HLL ++N++L++SRIE+G+ +L E   ++ +IV E  +++Q +AQEK        
Sbjct: 613 SVSGNHLLAIVNDVLEVSRIESGQTKLEELPCNIKNIVDEVEVIIQGQAQEKTQTFIVDT 672

Query: 355 DP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQ--YISIKDN 408
                  ++ D   +++V++NLL NAVKFT  GG++ + +              + +KDN
Sbjct: 673 SKVKDYYIYCDRLRVKEVLVNLLGNAVKFTPKGGKIELRIIQNEPAPEGYANYEVHVKDN 732

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++   +  +   F +   +  S  QG GLGL IA+  +   GG   + SK +EG EV
Sbjct: 733 GCGMSPEFMGKMFLPFERERTSTVSGIQGTGLGLSIAKQFVDLMGGTIEVTSKEKEGTEV 792

Query: 469 IAILPNTRVLNFIPEDNHESTQ 490
           I  + + R+     E+  E+T+
Sbjct: 793 IVRI-SPRLAQTEKEERTENTE 813


>gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 782

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 7/254 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++        +E R  AE+   AK+ FL++MSHE+RTPLN ILG SE+   +     
Sbjct: 385 RDISKDIRNMIRIEEARVIAEKSAKAKTTFLSNMSHEIRTPLNVILGLSELFNRKDFTGT 444

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   E I  I  S ++LL ++N+ILD S+IEAG+  + +   +  +++       +L+
Sbjct: 445 EKEY--ENIEAIRFSTENLLMIVNDILDFSKIEAGKLNVQKVDFNFTELISNLNKGFRLK 502

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG 400
           A+EK ++    I  S+   +  D+  + Q++ NL+ NA+KFT  G   V++T      + 
Sbjct: 503 AEEKGLDFSINITNSIPKYIVGDQYRLSQILNNLIGNAIKFTKKGFINVNITAKVLEDKT 562

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y +I+D+G GI +  + ++  SF Q   + +   +G GLGL I + +++  GG   +
Sbjct: 563 LQLYFTIEDSGYGIPKENLNSIFESFYQTYHSEQ-KPKGTGLGLSITKELVSLLGGNLTV 621

Query: 459 RSKLREGVEVIAIL 472
           +S++  G      L
Sbjct: 622 KSEVNVGTTFDFDL 635


>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
          Length = 1155

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 14/287 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 +++++    A +  +  +       + E  +R  + +  K+ F  ++SHE RTP
Sbjct: 470 ARQWLSADIELAKAVAAQAAIAVQQSHLYQKTREQAERLLQLDKQKTEFFQNISHEFRTP 529

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +  I G  E       G    ++          + + LL L+N++LDL R++AGR + S 
Sbjct: 530 ITLIQGPLESAVGTGEGLSYAQS-----AIALCNSRRLLRLVNQLLDLQRLDAGRMQPSF 584

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               L+D V + +   +   ++K + +  ++D    +V+ D +   +V+ NLLSNA+KFT
Sbjct: 585 RPCDLVDFVSQIVESFRPYCEKKALHLTTELDEC-PTVYIDMEKFDKVVYNLLSNAMKFT 643

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG + V +  + G    + ++D G GI + +IP +   F Q   +   + +G GLGL 
Sbjct: 644 PEGGTISVKL-QSQGHHCILQVQDTGIGIVKEQIPHLFERFRQAEGSENRSYEGSGLGLA 702

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFIPE 483
           + + ++  HGG+  + S   +G             LP  +V +   E
Sbjct: 703 LVKELVELHGGRVTVDSVYGKGTTFTLWLVIGNAHLPLQQVSDTPVE 749


>gi|229122768|ref|ZP_04251977.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
 gi|228660632|gb|EEL16263.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
          Length = 448

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTSATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|218676135|ref|YP_002394954.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218324403|emb|CAV25798.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 861

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 17/312 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ------AEKDDLIAELE 229
            +      + +I +    +        I   +F+ N+  +  +        +   I +L 
Sbjct: 404 AREFELRMLPNIQMVVQGSKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDITKLI 463

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+  +D  R+ AE     ++ FLA MSHE+RTPLN ILG S++++        +E  ++
Sbjct: 464 EAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKRSIH----DEDNRD 519

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S +HLL ++N+ILD S+IE G++ + +    L ++V     + +   ++K++E
Sbjct: 520 QVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPLCEDKSVE 579

Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403
                       +  D+  + Q++ NLLSNA+KFT   G + V+        T      +
Sbjct: 580 FTIVNHLIDDIKIHTDQVRLNQIMFNLLSNALKFTHQ-GSISVSFEIESILNTDFASLIV 638

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD+G GI E +I  +   F Q          G GLGL I ++++    G   +RS   
Sbjct: 639 RVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDIQVRSVKD 698

Query: 464 EGVEVIAILPNT 475
           +G E I  +P  
Sbjct: 699 QGSEFIIEIPVE 710


>gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 735

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 12/310 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAELEVAK 232
              A +       S+   L      + ++       +     L+        I   +  +
Sbjct: 270 LLAACVRGERTSFSMEYRLLAKDGSYRWLHGRGAPVRDTAGRLTLLTGATTDITRRKETE 329

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + R  A   + AKS FLASMSHE+RTP+N ILG +E++   ++      + + Y+ 
Sbjct: 330 LALAQARDAAMAASRAKSAFLASMSHEIRTPMNVILGMAELLAETSISS----SQRRYLE 385

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  SG+ L  L+++ILD S+IEA R  L         + RE   +    A  K +++  
Sbjct: 386 GIAGSGRMLSQLLSDILDFSQIEADRVALFPEVFDPAALAREVCGLAGEAAAGKGLDLQV 445

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKD 407
             DPSL   + AD   +RQV+LNL+ NAVK+T   GR+ V+    S          S++D
Sbjct: 446 HTDPSLPDRLVADPLRVRQVLLNLVWNAVKYT-QSGRITVSATPLSDPAGQGFVLFSVRD 504

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +GPGIA   +  +   F Q   A    + G GLGL I++++    GG  +  S    G  
Sbjct: 505 SGPGIAPEAMARIFDPFSQADAAAHRRQGGAGLGLSISRALARLMGGDVVAESAPGAGSC 564

Query: 468 VIAILPNTRV 477
               LP  R 
Sbjct: 565 FSFTLPALRA 574


>gi|331269772|ref|YP_004396264.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329126322|gb|AEB76267.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 652

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            K  +  +  K  F   +SHELRTPL  I    + +  +             +  + ++ 
Sbjct: 389 NKELQNISKMKDEFFNMISHELRTPLTIINSSVQ-LARDIYKEEITRNIGRVLLRVDQNC 447

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LIN ILD+S+ EAG  +L  S   ++ I    +  + + A+ + I++    +   
Sbjct: 448 RRLLKLINNILDISKAEAGFLQLQYSDFDIVVITENIVSSVSIYAKSRGIQLIFDTNEEE 507

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D+    ++ILNLLSNA+KFT  G +++VT          I +KD G GI E  + 
Sbjct: 508 KLVALDKDKYEKIILNLLSNAIKFTPKGRKIYVTTT-VENNKVKIKVKDQGIGIEEENLK 566

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           T+   F Q   +  +  QG GLGL + ++++   GG   + SKL EG E I   
Sbjct: 567 TIFDRFIQIRNSTTNCVQGTGLGLALVKNLVELMGGSIKVSSKLNEGTEFIITF 620


>gi|237721170|ref|ZP_04551651.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229450005|gb|EEO55796.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 644

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P V+    Q +             + +A + F  +   L  S       +  KD+L
Sbjct: 339 WGLDPAVLPFKVQLVNQPVSFYQQYTYQIWSACALFVILVLGLCISLFYYFRTKRLKDEL 398

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    +G    
Sbjct: 399 L----KSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTE 451

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +    Q
Sbjct: 452 EEQQSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQ 511

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
               +           +  D + M+QV++NLLSNA KFT   G++ +        +    
Sbjct: 512 SSENQFLFTTSFESFRMVTDVQRMQQVMINLLSNANKFT-KCGKITLDFSVNGETQMAVF 570

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I+    G   I     
Sbjct: 571 SVTDTGCGIPKEKQGLVFERFEKL----NEYAQGTGLGLSICKLIVHKWKGSIWIDPDYT 626

Query: 464 EGVEVIAILPN 474
            G   +   P 
Sbjct: 627 GGARFVFSHPL 637


>gi|256829208|ref|YP_003157936.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578384|gb|ACU89520.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1079

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +  L+  +      +  AE  N  KS FLA+MSHE+RTPLN ILG  ++++    G   +
Sbjct: 675 LTHLKRIEDSLRLAKDEAEAANKLKSEFLANMSHEIRTPLNGILGMLQLMQ----GSNLD 730

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +    +S + L  L+++ILD+S+IEA R    E A  ++D+ +    +     +
Sbjct: 731 AEQQECLHTAIKSSERLTRLLSDILDISKIEADRLIFREHAFDIMDVEKALTELFGQAVK 790

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           E  I    ++DP L   V  DE  + Q++ NL+ N++KF    G V V +          
Sbjct: 791 EAGIAYDFRVDPGLPKQVLGDEARLVQILFNLVGNSLKFADK-GYVSVDITPLPFTAGAP 849

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D+G G++E     +   F Q   +     QGVGLGL I + ++   GG   +
Sbjct: 850 LRLLFCVTDSGLGMSEQTQRDIFEPFIQSDGSYTRRHQGVGLGLTIVRKLVQRMGGSLCL 909

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNH 486
            S   +G  V   LP     +   ED  
Sbjct: 910 DSVSGQGTAVYVSLPFGLPPDRSGEDPT 937


>gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
 gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
          Length = 946

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 449 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 505 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 564

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V   +G    IS++D 
Sbjct: 565 LYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQC-AGDYLQISVRDT 622

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G   
Sbjct: 623 GEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRF 682

Query: 469 IAILPNTRVLNFI 481
              +P   V N  
Sbjct: 683 TIRIPLYGVQNTP 695


>gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 797

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 151/274 (55%), Gaps = 5/274 (1%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259
           +     +    I   +  +  L  + +    L++   E +  AE  N AKS FL +MSHE
Sbjct: 485 LMESERRLMATIADLRKSRQTLELQAQQLADLAEKYLEQKAEAETANRAKSEFLTNMSHE 544

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFSE++  E  GPL +  Y +Y  DI +SGQ+LL +I+++LD+SR+EAGR 
Sbjct: 545 LRTPLNAIIGFSELMGQEPYGPLGSPRYLDYCNDIRQSGQYLLGVISDVLDMSRLEAGRV 604

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L ++   +  +V + I  ++  A+EK I +  +  P  +SV AD   + +++L LL NA
Sbjct: 605 RLEKTDFEIDTVVSKAIAGVKATAEEKEITLLAETTPQ-TSVHADRGAIEKILLILLRNA 663

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KFT   GRV V           I ++D G GI    +  +   F Q   ++ +  +G G
Sbjct: 664 IKFTPAQGRVTVRTRMIQ-GALNIYVEDTGMGIPPAPLARLGRPFEQLHGSMANGMKGSG 722

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL IA+S++  HGG   IRS +  G  V+  +P
Sbjct: 723 LGLAIARSLVDLHGGSMRIRSTVGSGTIVLVRIP 756


>gi|91783499|ref|YP_558705.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687453|gb|ABE30653.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 657

 Score =  255 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 12/275 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + + I E E   +     R+ AEE N AK RFLA +SHELRTPL  +L  + V+E   M 
Sbjct: 263 QREAIEERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MI 319

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   +  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + D++   + + +
Sbjct: 320 PELPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFR 379

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              Q K  ++    +     V AD   ++Q++ NL+ NA KFT  GG ++V         
Sbjct: 380 SEIQVKQQDVHVHKNARHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-RDERMH 438

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I+++D G GI   +I  +  +F QG+  +     G+GLGL I +++   HGG    +S
Sbjct: 439 VQIAVEDTGIGIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498

Query: 461 KLRE--GVEVIAILPNTRVLN-----FIPEDNHES 488
                 G      LP            +P+  H +
Sbjct: 499 -PGAHCGATFTITLPTATAPEVTSPVVVPDQVHPA 532


>gi|328949780|ref|YP_004367115.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450104|gb|AEB11005.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 368

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 152/368 (41%), Gaps = 11/368 (2%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           LLV  +A G+ +    L+ P  +      +     ++    + A+    L      +   
Sbjct: 12  LLVVLLAEGVLFLSAELMAPRLYQGHVARMMHVMGMMGMGPMEAVLRADLEAGHQNTLTA 71

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            ++A    A          +A  ++  +      +  + + + ++     EKD+L     
Sbjct: 72  AMLASLPVATTLAAGAAWFVARRISRTVRVLAQGSERMAQGDYRLRLPVLEKDELGELAR 131

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               L+ E   R E     +   + +++HELRTPL A+ G++E +    M P        
Sbjct: 132 HFNRLA-EALDRVEAS---RVELIGTVAHELRTPLAALQGYAEALADGVMPPE------R 181

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               I R    +  L+N++  +SR+EAG  E+   +++   ++ E +        +K + 
Sbjct: 182 AAQAIAREVSAMRRLVNDLSLVSRVEAGAIEVHPVSVAPRVLLEEALDRFAPAFAQKGVR 241

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +    +  V AD + ++QV+ NLL NA++ T  GG V +      G      ++D G
Sbjct: 242 LLLEAPEEMPWVQADPERVQQVLSNLLVNALRHTPSGGTVVLGA-RVEGDAVRFHVRDTG 300

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           PGI     P V   F +   A   +  G G+GL IA+ ++   GG+  + S    G E  
Sbjct: 301 PGIPPEHQPRVFERFYRVDPARSRSAGGSGVGLTIARGLVEAMGGRIGLESAPGRGAEFF 360

Query: 470 AILPNTRV 477
             LP T+ 
Sbjct: 361 FTLPLTKA 368


>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
 gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
          Length = 946

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 449 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 505 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 564

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V   +G    IS++D 
Sbjct: 565 LYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQC-AGDYLQISVRDT 622

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G   
Sbjct: 623 GEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRF 682

Query: 469 IAILPNTRVLNFI 481
              +P   V N  
Sbjct: 683 TIRIPLYGVQNTP 695


>gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 758

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +    E+R+ AE+  L K  FL +MSHE+RTPLNAI+GFS+++  E     ++
Sbjct: 515 IQELKDHEQELIESRELAEQAEL-KQSFLNNMSHEIRTPLNAIVGFSDMLANEP--EFSD 571

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I+ + + LL L+ ++L+LSRIE+G         S+  ++ +      L  Q
Sbjct: 572 EERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 631

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              ++  +   P    V  D   + QV+ N L+NA KFT  G         +     ++ 
Sbjct: 632 PP-LQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLY 690

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI   E   +   F +         QGVGLGL I   I+   GG+  ++S+   
Sbjct: 691 VEDTGIGIPHSEQKMIFERFYK----RSEFSQGVGLGLSICVLIVEKMGGRIELQSEEGR 746

Query: 465 GVEVIAILP 473
           G     +LP
Sbjct: 747 GSRFTVVLP 755


>gi|237653374|ref|YP_002889688.1| histidine kinase [Thauera sp. MZ1T]
 gi|237624621|gb|ACR01311.1| histidine kinase [Thauera sp. MZ1T]
          Length = 855

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 143/328 (43%), Gaps = 24/328 (7%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAE 220
           +  S   +V+A+   AI    +L   +  ++     F               ++      
Sbjct: 537 LAASTLAMVLAVILIAIWMAGLLSRRITHVVDGIHRFEQGDLDQRLAAAGGDELAELARA 596

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +   ++ +    ++ R  AE+ N  KS FLA+MSHELRTPLN ++GF+E++ +E   
Sbjct: 597 FNRMADTVQRSIRSLEDARHTAEQANRMKSEFLANMSHELRTPLNGVIGFAELLSME--- 653

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L +   +E    IH S +HLL ++N++LDL+++EA R  L    I L+ +V     + +
Sbjct: 654 -LEDPEQRECATTIHDSARHLLAVVNDVLDLAKVEANRLTLVAQTIDLVPLVASVAALHK 712

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           + A+ K +++   +      V AD   +RQ+I NLLSNAVKFT   G + V +   +   
Sbjct: 713 VNAEAKGVDLRLDLPAHPCIVDADPVRLRQIIENLLSNAVKFTRE-GHILVGLAAAAD-E 770

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------AEQGVGLGLPIAQSIMANH 452
             I I D G GIA  E   V   F Q +  +                     ++ +    
Sbjct: 771 ISIRIADTGCGIARDEQERVFAPFYQAASFLNRGHGGTGLGLTL--------SRRLAHRM 822

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GG   + S   +G      LP       
Sbjct: 823 GGTIDLDSVPGKGSTFTLRLPRHFTAPA 850


>gi|222149564|ref|YP_002550521.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221736546|gb|ACM37509.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1125

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 172/369 (46%), Gaps = 12/369 (3%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           +            I K  T L   +++++    L  A+       V A S +  + ++  
Sbjct: 549 VGTVARTVLPSTVIEKLTTRLGRYAMTSIGAISLVGAILALIAHQVSAASPETELVVNAT 608

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRKR 241
            + +  + +      T+       S +        ++ L    IA      +     ++ 
Sbjct: 609 VLIVFFVFSVIAGIATWFYVLAHDSRLVAEEESYRQNSLLLKEIAAHRKTDAALQTAKET 668

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR++  +SHELRTPLNA++G+++++E +   P      +  I  I RS  HL
Sbjct: 669 AEAANRAKSRYVVGLSHELRTPLNAVMGYAQLLEQDDTIPAP---RQSAIRVIRRSADHL 725

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
             LI+ +LD+S+IEAGR ++  + +++ D + + I ML+ +A+ K +        +L   
Sbjct: 726 SGLIDGLLDISKIEAGRLQVFSAELNIHDFLDQIIDMLRPQAEAKGLTFTHTRAKNLPQY 785

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V ADEK +RQ+++NLLSNA+KFT   G V   + +   +    ++ D G GIA+ ++  +
Sbjct: 786 VRADEKRLRQILVNLLSNAIKFTDA-GTVTFDIAYR-SQVASFTVTDTGRGIAQKDLSRI 843

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--L 478
              F +G         G+GLGL I + +    GG+  + S+  +G      L  + V   
Sbjct: 844 YEPFQRGEADTIRPMPGLGLGLTITKLLTNTLGGEIAVESETDKGTTFRVRLMLSSVDRP 903

Query: 479 NFIPEDNHE 487
           +  P+   +
Sbjct: 904 STAPKAERK 912


>gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1239

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 148/268 (55%), Gaps = 11/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  + A+    E   +    N  KS FLA+MSHELRTPLN+IL  S+ +     G LN+
Sbjct: 580 ISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLND 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + +   IHR+G  LL LIN++LDL++IE+G  +L    ++L D++R+    L   A 
Sbjct: 640 KQVR-HADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAA 698

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
           +K + +  ++DP++  ++ +D   ++Q++ NLL+NA+KFT   G+V +T           
Sbjct: 699 QKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEK-GQVELTASLLPADQDGR 757

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +   + ++D+G GIA+ +   +  +F Q   +I     G GLGL I + ++   GGQ ++
Sbjct: 758 QMLQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMV 817

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNH 486
            S+L +G     +LP   V++  P    
Sbjct: 818 NSELGQGATFTVLLP---VVSDAPAATQ 842


>gi|124515321|gb|EAY56831.1| putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 506

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 11/328 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              V V  S   I+ + +L  + + ++ + +      T  + +            D++  
Sbjct: 185 MMIVSVEFSAVGILLVLILLWAFSSLILSPVLRLIEGTKRISEGVFIDPVRVTGTDEMGD 244

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                  ++    ++  + +  KS F+   SHELRTPL +I GF  ++    +GPL  E 
Sbjct: 245 LARALNEMA----RKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPE- 299

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  +     HL+ L+N +LDL RIE+G+       + L+ ++       +  A++ 
Sbjct: 300 QQNGLAIVQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRHEAMAEQG 359

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           NI     +DP L   +  D   + Q++ NLL NA KFT  GG V + V         I +
Sbjct: 360 NITFRLILDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSR-KDCQLEIEV 418

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI +  +P +   F Q +       +G+GLGL I + I+ N  G+  +R     G
Sbjct: 419 RDTGIGITQESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRG 478

Query: 466 VEVIAILPNTRVLNF----IPEDNHEST 489
                 LP   V++      PE   ES+
Sbjct: 479 TVFRVTLPFQPVVSEDGSTSPETGKESS 506


>gi|241766559|ref|ZP_04764418.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241363194|gb|EER58777.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 579

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/452 (20%), Positives = 180/452 (39%), Gaps = 22/452 (4%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
             I  L+  +   ++  + L   +V  + T F    +   W    +A+    L L +   
Sbjct: 18  ERIDMLYRHTRTTLATNVLLASAVVGVLWTMF-PPALLLGWWGAIVALVLVRLGLVRGYR 76

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +   +  +   W  +L    +  G  W    +      +   L+          ++  ++
Sbjct: 77  HR--EPAQARRWAHYLTWATLLSGAAWGASGVAFFAPQSVVALSFVTIILA--GIAAGSV 132

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
             +        S  P V+ ++ + ++      + +  +    L         L K   + 
Sbjct: 133 PAYASWPQAQYSAIPTVLPMAGRFLVEGG-EWVVMGLIGVLYLYNVQSSARQLAKVIEES 191

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +  + EK  L            E ++  E  + AK++FLA+ SH+LR PL A+    EV+
Sbjct: 192 IRLRLEKQALA-------QRLGEEKQVVEAAHRAKTQFLAAASHDLRQPLQAVHLLIEVL 244

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                   +       I  +  +   L  +++E+LD+SR++AG     + A  L D++  
Sbjct: 245 RRTP----DPAQSALLIERLAEAAGALDEVLDELLDMSRLQAGLMMPHKIAFPLNDLLSR 300

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               ++L A +K +E+     P+ + V++D + + +++ NL+SNAV  TA  GRV V   
Sbjct: 301 LDGEMRLLADKKGLELCFV--PTRAWVYSDPQMLLRMLRNLVSNAVHHTAQ-GRVLVGC- 356

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              G    + + D GPGIA      +   F Q     +   +G+GLGL I   +      
Sbjct: 357 RQRGGEIGVMVCDTGPGIAPEHHTAIFREFYQLDNPERDRRKGLGLGLAIVAGLCRLLEH 416

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           + L++S L  G      +P  +    +PE  H
Sbjct: 417 RVLLKSVLGRGSCFELRVPQVQ-PAALPEAAH 447


>gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 454

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 3/237 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHE+RTPL +I GF+E +     G  + +T +E+ G I    + L N
Sbjct: 214 QLERIRKDFVANVSHEIRTPLTSIRGFAEALHDG--GINDPKTAREFSGIILSHAERLGN 271

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +++++L LS +E G+  +   ++SL   +     +    A++K I    ++     +   
Sbjct: 272 IVSDLLHLSELETGKAVMRYGSVSLSRQIAHIRDVYADHARKKGIRFTVQLPEETLTYET 331

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M  V+ NL+ NA+K+T  GG V    GW  G      ++D+G GI   E+  +   
Sbjct: 332 DEGKMDLVLGNLVDNALKYTPEGGEVFFG-GWKEGDAIVFEVRDSGVGIPRTEVDRIFER 390

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A      G GLGL I + I+    G   + S   +G      +P+      
Sbjct: 391 FYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFFVRVPSREPAPS 447


>gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 153/388 (39%), Gaps = 37/388 (9%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA--LSISALSNFMLPYAVFLSFFPVVVALST 176
                +      T     +T+   A   +    +   L           S  P++ A+ST
Sbjct: 155 AIIGNIPDGLLVTNDRARITMANPALGGMFREAAGGNLVGRDCREVFADSLGPMLAAIST 214

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               ++ V      G + +A+    Y      +  +  L       D+  + E+      
Sbjct: 215 SQQQAVTVQVELAGGRIGSAIGTAIYRGGAGQEEFIGYLIV---VRDITHQKEI------ 265

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEY 290
                       K  F++++SHELRTPL ++LGF+ +I  +  G      P  +   +  
Sbjct: 266 ---------ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316

Query: 291 -------IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  I  I   G+ L  LINE+LDLS++EAG+ E     ++  +IV+  +       
Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            E   E+  +++P L  +  D   + QV++NL++NA KFT   GRV V     +G     
Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFT-DHGRVTVRARRAAGEEAVL 435

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D+G GI    + +V   F Q    +    +G GLGLPI + I+  HGG     S  
Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490
             G      LP   V+        E T 
Sbjct: 496 GAGSTFRFTLPTAAVVGST--AERERTD 521


>gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
 gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
          Length = 543

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E    + +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 289 EDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 344

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 345 DVEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQK 404

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFT+  G + +    T      
Sbjct: 405 NQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSE-GSITLGYRLTRQKDEL 463

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      +  +G GLGL I + I+   GG   + ++
Sbjct: 464 YFFVKDTGIGIPADQAGKVFERFVKL----NTFIKGTGLGLAICRVIIERLGGTIGVETR 519

Query: 462 LREGVEVIAILPNTRVL 478
             +G      LP    +
Sbjct: 520 EGKGSCFWFRLPVREDM 536


>gi|86144427|ref|ZP_01062759.1| Signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85837326|gb|EAQ55438.1| Signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 857

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 17/312 (5%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ------AEKDDLIAELE 229
            +      + +I +    +        I   +F+ N+  +  +        +   I +L 
Sbjct: 400 AREFELRMLPNIQMVVQGSKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDITKLI 459

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+  +D  R+ AE     ++ FLA MSHE+RTPLN ILG S++++        +E  ++
Sbjct: 460 EAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKRSIH----DEDNRD 515

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S +HLL ++N+ILD S+IE G++ + +    L ++V     + +   ++K++E
Sbjct: 516 QVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPLCEDKSVE 575

Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403
                       +  D+  + Q++ NLLSNA+KFT   G + V+        T      +
Sbjct: 576 FTIVNHLVDDIKIHTDQVRLNQIMFNLLSNALKFTHQ-GSISVSFEIESILNTDYASLIV 634

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD+G GI E +I  +   F Q          G GLGL I ++++    G   +RS   
Sbjct: 635 RVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDIQVRSVKD 694

Query: 464 EGVEVIAILPNT 475
           +G E I  +P  
Sbjct: 695 QGSEFIVEIPVE 706


>gi|90425281|ref|YP_533651.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107295|gb|ABD89332.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 864

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 156/338 (46%), Gaps = 34/338 (10%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +  MLP    L         + Q+  S+  L ++++ + A  L   T +    +      
Sbjct: 268 AARMLPNYPVLIAVSQTEVSALQSWRSIAALIVAMSSLTAIVLLIVTVVIARWW------ 321

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                 +D LI++              A+  N AKS F+A MSHE+RTP+NA+LG +  +
Sbjct: 322 ----IRQDQLISD--------------AQSANAAKSTFVAMMSHEIRTPMNAVLGLATNL 363

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    +   +  +  IH +G  LL+++N+ILD S++EAGR  L   A S   +V  
Sbjct: 364 LDSRL----DAEQRRSVVGIHDAGDALLDILNDILDFSKLEAGRLSLESIAFSPEALVES 419

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVT 392
            + ++  RA  + + +  +IDPSL  ++  D   +RQV+LNL+SNAVKFT  G  V    
Sbjct: 420 ALSIVLPRATARGLRVRNQIDPSLPIALQGDAGRIRQVLLNLMSNAVKFTPSGEVVVTTK 479

Query: 393 VGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             W       +   I D G GIAE +I ++ T F Q   +I     G GLGL I + ++ 
Sbjct: 480 CRWADESFAALEWIIADTGIGIAEQDIGSLFTDFAQADSSISRRFGGSGLGLAICKRLVE 539

Query: 451 NHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNH 486
             GG+  + S   +G        LP    L     D+ 
Sbjct: 540 QMGGEIQVSSAYGKGTTFRFSLTLPLASQLPVPDTDDP 577


>gi|329725290|gb|EGG61777.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21189]
 gi|329730872|gb|EGG67250.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21193]
          Length = 592

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 365 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 422

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 423 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 481

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 482 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 540

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 541 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 590


>gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1038

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 11/259 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I+EL+  +     +R+ A+E N AK RFLA+M+HE RTP+NA+ G  ++++   +   
Sbjct: 639 EDISELKRIEKELRSSREEAQEANEAKGRFLANMTHEFRTPMNAVKGMVQLLQRSELTS- 697

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +E +  I  S   LL ++N+ILD S++++   EL+E  I     +RE   ++ + 
Sbjct: 698 ---EQQENLRLIKSSVDSLLVIVNDILDYSKLDSVHMELNEENIDFPAFLREMGDVVDIG 754

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
           A  K +++  + +     V  D   +RQV++NLL N VKFT   G V +        G  
Sbjct: 755 AMNKPLQVILEAENVPDCVRVDSLRLRQVLVNLLGNGVKFTDK-GNVTLRCRPEGPEGEG 813

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   + D G G+ +    ++  SF Q   +I     G GLGL I   ++ + GG+ 
Sbjct: 814 GKLRLLFEVSDTGIGLPKDGAESLFESFVQADPSITRKYGGTGLGLAICYKLVKHLGGEL 873

Query: 457 LIRSKLREGVEVIAILPNT 475
             R+  + G     +LP  
Sbjct: 874 SARNNEQGGALFSFVLPVE 892


>gi|196035779|ref|ZP_03103182.1| sensor histidine kinase [Bacillus cereus W]
 gi|195991746|gb|EDX55711.1| sensor histidine kinase [Bacillus cereus W]
          Length = 461

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E   +Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLQYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901]
 gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901]
          Length = 663

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 142/262 (54%), Gaps = 19/262 (7%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + AK+ FL  +SHELRTPL AILG+++++   +     +E  +EY+  +  +G+HLL L
Sbjct: 145 ASRAKTEFLTRLSHELRTPLTAILGYTDLLSTRS----KDEADQEYLQIVSHNGKHLLAL 200

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWA 363
           +N++LDLS+IEAG+ E+ +S   +     +  ++  ++A++K ++   ++   L    + 
Sbjct: 201 LNDVLDLSKIEAGKLEIEKSFFEIQPFFSDIYLLFNMKAKDKGLDFEVRLTGELRPVFYG 260

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRV----HVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           D   +RQ++LNL+ NA+KFT+ G  +     +       +   I + D GPGI+  ++  
Sbjct: 261 DATRLRQIVLNLIGNAIKFTSQGSVIVEVSSIVENVGEEQQLRICVHDTGPGISSEQLDD 320

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---- 475
           +   F Q +   +++E G GLGL I++ +++  GGQ  + S L  G      LP+     
Sbjct: 321 IFLPFNQAASKSEASENGTGLGLTISRELVSRMGGQLTVESTLGVGSCFCCTLPHEKIDG 380

Query: 476 ------RVLNFIPEDNHESTQY 491
                 R+    P  ++ES +Y
Sbjct: 381 QPAQILRIDTHSPAPSNESVRY 402


>gi|228915828|ref|ZP_04079404.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843809|gb|EEM88882.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 448

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|218901846|ref|YP_002449680.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218537537|gb|ACK89935.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 461

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|160937196|ref|ZP_02084558.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439760|gb|EDP17509.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC
           BAA-613]
          Length = 770

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +      ++ RK AE  N AK+ F  SMSH++RTP+NAI+G +E+       P       
Sbjct: 239 KQILRAEEKARKAAESANEAKTNFFTSMSHDIRTPMNAIIGMTEIAVNHLDDPN---KTM 295

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +G I RSG+ L+ L+N+ILD+++IE+G+ E+     SL +++   ++++    +EKN 
Sbjct: 296 NCLGQIRRSGKLLVGLVNDILDMAKIESGKMEIHAERTSLAELIENIVVVITPLVKEKNQ 355

Query: 349 EI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQY 402
           +      +     +  D   M QV++NL+SNA+KFT  GG + VTV  +           
Sbjct: 356 DFQICIREVRHEHLMLDSVRMNQVLMNLISNAIKFTPEGGSIRVTVEESLSPHPGQAHFT 415

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            ++ D G G++      + T+F +   +     +G GLG+ I   I+AN GG   + S+ 
Sbjct: 416 FTVSDTGMGMSREFQNNIFTAFVRERDSRVDHIEGSGLGMAITGMIVANMGGSIRVESEP 475

Query: 463 REGVEVIAILPNTRVLNFIPEDNHES 488
             G      L   R     PE + ES
Sbjct: 476 GMGSIFTVELDFCR---AEPEMDSES 498


>gi|312829880|emb|CBX34722.1| sensor protein srrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727652|gb|EGG64108.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21172]
          Length = 564

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 337 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAVVLDESKRLNRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 395 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 454 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 512

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 513 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|302325748|gb|ADL24949.1| sensory box histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1008

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 13/283 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S  +    Q E+     +LE       +    A+  N AK  FL S+SHE+RTPLNA++G
Sbjct: 601 SVDESTRLQLEQK---EQLETQAEALKQALSAAQAANSAKKEFLNSISHEIRTPLNAVIG 657

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            + +         + E  K+ +  I +S   LL++IN+ILD+SRIE+G+++L E+ + L 
Sbjct: 658 LTSIASTHLG---DAERVKDCLVKIDQSSDRLLSIINDILDMSRIESGKFDLKEAPMHLF 714

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           ++V E    ++   Q K+++      D +   V  D + +RQ +L +LSNA+KFT  GG 
Sbjct: 715 ELVHEVERDIRNDLQAKDLKFELDCVDINDDEVVCDRERLRQALLKVLSNAIKFTKEGGS 774

Query: 389 VHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           + ++V  T             IKDNG G++E  + TV   F +    +    +G+GLGL 
Sbjct: 775 ISMSVKETPLTKSSYAAYEFRIKDNGIGMSEEFLKTVYEPFAR-ESTVSRDVRGMGLGLA 833

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           I ++ +   GGQ  I S+L  G EV        V +   ++++
Sbjct: 834 ITKNSVEMMGGQIEIASRLHVGTEVTMTFEFKLVQSKKNDESN 876


>gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 737

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 128/250 (51%), Gaps = 14/250 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLASMSHE+RTPLN I+G+++V+  + + P      +  +  I  +G  LL ++N+I
Sbjct: 247 KTDFLASMSHEIRTPLNGIIGYTDVLLDQDLKP----EQRRLLERIQFAGAALLTVVNDI 302

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+  L     SL+ +V   + ++   AQ K + +   +DP + + V  DE  
Sbjct: 303 LDFSKIEAGQVALEPRPFSLVALVSNTVSIIAEAAQRKGLALTVDVDPHMPAAVIGDEDR 362

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+LNLL+NA+KFT   G + + V         +    S+ D G GI + +   +   
Sbjct: 363 LRQVLLNLLNNALKFTHE-GSITLQVRCEDSLSDCQWICFSVTDTGIGIPKDQHEHLFHR 421

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPN--TRVLN 479
           F Q   +      G GLGL I++ +++  GG+  + S+  +G        LP     V  
Sbjct: 422 FYQVQHSSTREIGGTGLGLAISKRLISLMGGEIGLESEEGKGSRFWFKVLLPRTDEDVAA 481

Query: 480 FIPEDNHEST 489
            +  +  E  
Sbjct: 482 SVLAETSEKA 491


>gi|120600688|ref|YP_965262.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120560781|gb|ABM26708.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1189

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 128/244 (52%), Gaps = 8/244 (3%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +  ++ A+  + AKS FLA+MSHE+RTP+NAI+G  E++   T     +      I 
Sbjct: 686 EELEHAKEVADSASQAKSTFLATMSHEIRTPMNAIIGMLELVLQRTNSQQFD---LNSIK 742

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             + S   LL LI +ILD++RIEAG+  LS    +L  I    + +    A++K I +  
Sbjct: 743 VAYDSANDLLELIGDILDIARIEAGQLSLSPIRTNLKAITTSVVRVFDGLARQKGITLQL 802

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG--RGQYISIKDN 408
             DP+++  V  D   ++Q++ NL+ NA+KFT  GG +V +     +        ++ D 
Sbjct: 803 DFDPTITNDVLVDPMRIKQILSNLIGNAIKFTDSGGVKVEIQSENVTNTTHTILFTVTDT 862

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI+E +   + + F Q      +   G GLGL I++S+    GG  +++SKL +G +V
Sbjct: 863 GIGISEDDQEKLFSPFSQAHGTHNT-HGGTGLGLMISRSLCEMMGGSLILKSKLYQGTQV 921

Query: 469 IAIL 472
              L
Sbjct: 922 RMEL 925


>gi|323493067|ref|ZP_08098201.1| histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323312715|gb|EGA65845.1| histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1088

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 12/238 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G   ++    +        +  +  I  S   LL++IN+ILD 
Sbjct: 438 FLANMSHEIRTPMNGVVGMLSLLSETELKS----DQRTMVSSIKDSALTLLHIINDILDF 493

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+  L    + L  ++   + +L L+A+ K IE++   DPSL   + +D   + Q
Sbjct: 494 SKIEAGKMSLESVPVELQSLLERTLDVLHLQARNKGIEMYLTYDPSLPKMIMSDSVRLSQ 553

Query: 371 VILNLLSNAVKFTAIG----GRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTS 423
           ++LNL+ NAVKFT       G++ V+    S        + ++DNG G+ + ++  +  S
Sbjct: 554 IMLNLIGNAVKFTESTDERVGKIWVSASLGSNGIAPCIDLIVEDNGIGMTKEQLKRLFKS 613

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           F Q   +      G GLGL I QS++   GG   + S+          +P   V +  
Sbjct: 614 FTQADTSTTRLYGGTGLGLSITQSLLDLMGGTISVESEFGVSSRFSIEVPFIAVESPP 671


>gi|302338211|ref|YP_003803417.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635396|gb|ADK80823.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 603

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHEL+TP+ +I GF E +    +   + E    ++  +      L N
Sbjct: 371 QLERMRKEFVANVSHELKTPITSIKGFVETLLDGAID--DRENAFRFLTIVQNQTTRLGN 428

Query: 304 LINEILDLSRIEAGRYE--LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           +I+++L LSR+E    E  +S   I L   V E I + Q RA EK+I+I  + D  L  +
Sbjct: 429 IIDDLLTLSRLEQNDEESGISMEKIPLCHPVNEAISICQGRADEKSIDIHVECDREL-EI 487

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             +   + Q ++NL+ NAVK+   G  V V       R   + ++DNGPGI E +   + 
Sbjct: 488 LGNGHLIEQAVVNLVDNAVKYCPEGSVVLVRCEREEDRRILLVVQDNGPGIPEADQERIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             F +   A      G GLGL I + IM  HGG   + S   EG   +   P 
Sbjct: 548 ERFYRVEKARSRDMGGTGLGLAIVKHIMLLHGGTVALESSRGEGASFLLRFPA 600


>gi|291569373|dbj|BAI91645.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 582

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 138/284 (48%), Gaps = 16/284 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T     + +  +   A     +          +E R  A   +  KS FLA+ SHELRTP
Sbjct: 298 TRQWTAAEIDFVRELATHVGTVIAHATLYQELEEARLEAVALSRLKSEFLANTSHELRTP 357

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF +++        + E  +E+I + H++  HLLNLIN++LD+++IEAG+ ++  
Sbjct: 358 LNGMIGFLQLVLDGM--ADDPEEEREFIEEAHQAAIHLLNLINDVLDIAKIEAGKMDIEL 415

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381
           + + + +++RE    ++ + ++KN+++  + +       V+ + + + QV+LNL+ N++K
Sbjct: 416 ALVKVDEVLREIEHFIRPQVEQKNLKLTIQTEAGNSQIIVYGNYQRILQVMLNLVGNSIK 475

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT  GG +++++G                    + D G G+   +   +  +F Q     
Sbjct: 476 FTHKGG-INISLGIIRENVIIQNQQFPGFVEFRVVDTGIGVPIEKQDRLFQAFSQVDSGY 534

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
                G GLGL I+Q ++   GG+    S     G  V   +P 
Sbjct: 535 TKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIPL 578


>gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 462

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEEN 246
           + T L    +IT  L +            + +    E    L +            +   
Sbjct: 175 IITILLLSRFITLPLIRMKEATEQLSQGNNQVDLSNERNDELGELANAITKLSTDLDRLK 234

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            A++ FL+S+SHELRTPL  I G+++++E    G       +EY+  I     HL +LI 
Sbjct: 235 KARNEFLSSISHELRTPLTYIKGYADILER---GDTTEREREEYLSIIREETAHLTSLIG 291

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            + DL++++  ++ + +  +S+ +++    ++++   +EK I +  +    L   + D +
Sbjct: 292 NLFDLAKLDRNQFAIEQKKVSIAELLNSVALLVKPAFEEKQITLSVQCSEDL-QAYVDSE 350

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++QV+LN+L NA K +  G  V +T          I I+D G GI E E+P V     +
Sbjct: 351 RIQQVLLNILDNARKHSFSGSDVRITCT-EEENKIAIRIRDEGQGIPEDELPFVFDRLYR 409

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +      G GLGL IA+ I+ +HGGQ  I S++ EG  V   L
Sbjct: 410 VEKSRSRERGGSGLGLAIAKEIVESHGGQINIDSQVGEGTTVTVRL 455


>gi|227538423|ref|ZP_03968472.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241705|gb|EEI91720.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 542

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           KS ++ +  Q +  +  AELE +K     +++ AE+   +K  FLA+MSHE+RTP+N I+
Sbjct: 120 KSFMQQVLTQLQIKEKNAELEQSKLELIRSKEEAEQARKSKEIFLANMSHEIRTPINGIM 179

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G ++++   T+        K+++  +  +   LL +IN+ILD+S+I++G  +L    +  
Sbjct: 180 GITQMLRSSTLSS----EQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVF 235

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            D+  +   + +++A  KN+E    ID  L + V  D   ++Q++ N +SN +KFT  G 
Sbjct: 236 QDLFDDLNKIFKIKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGK 295

Query: 388 -RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             + + +            S+KD G GI    +  +  +F Q    I     G GLGL I
Sbjct: 296 VTLSIRILEVKDNSYFIRFSVKDTGIGIRAESLNKIFLAFEQADDGITKKFGGTGLGLAI 355

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIA 470
            + +     G     S   EG E   
Sbjct: 356 VKRLADLFNGSVDATSVYNEGSEFSF 381


>gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 766

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 135/246 (54%), Gaps = 14/246 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AKS FLA+MSHELRTPLN IL  ++++            Y+EYI  I R+  HLL +I
Sbjct: 356 SQAKSLFLANMSHELRTPLNVILIMTQMMNRT---ANKIPEYQEYIDLISRNSDHLLKMI 412

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           N++LDL ++EA +  L  S  +L ++++   +  + +  +K+I+I  +ID  +   +  D
Sbjct: 413 NDVLDLFKVEAEKASLENSETNLFELLQSIYVTFKQQCTDKHIQINLEIDEKVPRLILVD 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--------ISIKDNGPGIAEG 415
            + ++QV++NL+ NAVKFT  G   V VTV  T  + ++         +++D G GIA  
Sbjct: 473 VQKLQQVLINLIGNAVKFTEHGEITVRVTVELTQDKTKWQDASIPLAFTVEDTGVGIAPE 532

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           E+  +  +F Q +   +    G GLGL I+Q ++   GG+  ++S L  G     +LP  
Sbjct: 533 EMNQIFDAFAQAAAGRQM-TGGTGLGLSISQGLVQLMGGEITVKSTLGVGSTFHFVLPVQ 591

Query: 476 RVLNFI 481
            V   I
Sbjct: 592 PVAEAI 597


>gi|114564282|ref|YP_751796.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335575|gb|ABI72957.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 752

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 9/314 (2%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             + L  F + +A      ++  +  +  A        F  ++  H       ++S    
Sbjct: 155 QFMILVLFFMALAWLVDYRITKPLRSLEFAFAQLAKGDFDCHVDKHQNNEVGSVISAF-- 212

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            + +  E+       +  R +AE  + AKS F+ASMSHELRTPLNAILG +++       
Sbjct: 213 -NHMATEVASNHQKLNTLRIQAESASKAKSDFMASMSHELRTPLNAILGLAQL---YEYD 268

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L N+  K+    I+R+G+HLL LIN++LDL+ IE+G  + S    S+  +V E + ++ 
Sbjct: 269 VLANKVQKDNAKSIYRAGEHLLLLINDVLDLTAIESGNMQFSFDYASIKRVVEESVALVS 328

Query: 341 LRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              + +++ I  +   +      + DE+  +QV+LNLLSNA+K+    G + ++   +S 
Sbjct: 329 ELVKAQSMTIHTEGFNELEGLCFYIDERRFKQVMLNLLSNAIKYNKPHGDIFISCSVSSN 388

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ D G G A  ++  +   F +   A  S   G G+GL I + ++    G+  +
Sbjct: 389 NQCTINVADTGYGFAADDVSRLFKPFDRL-GAETSNINGTGIGLVITRELVERMQGEIRV 447

Query: 459 RSKLREGVEVIAIL 472
           +S+L +G     I 
Sbjct: 448 QSELNKGSCFSLIF 461


>gi|148267975|ref|YP_001246918.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394040|ref|YP_001316715.1| histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|253314859|ref|ZP_04838072.1| histidine kinase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006277|ref|ZP_05144878.2| histidine kinase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793568|ref|ZP_05642547.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|258407190|ref|ZP_05680338.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|258420274|ref|ZP_05683222.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|258437322|ref|ZP_05689306.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|258443527|ref|ZP_05691866.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|258446734|ref|ZP_05694888.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|258448649|ref|ZP_05696761.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|258454265|ref|ZP_05702235.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|269203118|ref|YP_003282387.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892990|ref|ZP_06301224.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|282928961|ref|ZP_06336548.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|295406611|ref|ZP_06816416.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|296276359|ref|ZP_06858866.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245805|ref|ZP_06929670.1| sensor protein srrB [Staphylococcus aureus A8796]
 gi|76363426|sp|Q99TZ9|SRRB_STAAM RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363427|sp|Q7A5H7|SRRB_STAAN RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|147741044|gb|ABQ49342.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946492|gb|ABR52428.1| Histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|257787540|gb|EEV25880.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|257841217|gb|EEV65663.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|257843737|gb|EEV68138.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|257848527|gb|EEV72515.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|257850933|gb|EEV74876.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|257854309|gb|EEV77258.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|257857927|gb|EEV80816.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|257863544|gb|EEV86302.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|262075408|gb|ACY11381.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589368|gb|EFB94459.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|282764308|gb|EFC04434.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|294968358|gb|EFG44382.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|297177456|gb|EFH36708.1| sensor protein srrB [Staphylococcus aureus A8796]
          Length = 583

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAVVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|307294607|ref|ZP_07574449.1| histidine kinase [Sphingobium chlorophenolicum L-1]
 gi|306879081|gb|EFN10299.1| histidine kinase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 159/444 (35%), Gaps = 35/444 (7%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
            +    + +   V  +     L++           +  +  L+  A      +       
Sbjct: 3   RLTASQITASLAVLLLASGGALMIGAGPLDIVLPVLAGLAVLVIAAGGEQEQTEESPAAA 62

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
            +I     +          +  G+   L+ +            +      +         
Sbjct: 63  LEITDIFAHPAVR-----GLLEGISDPLMLIERGRIIAANRAALRLLGAHIEGEDARIAI 117

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                     S  P+              + I L G+      +   I       +V+ L
Sbjct: 118 RHPAAAERLASLAPMA-----------EPVMIELVGLGTREQRWQMRIAPVGEDDHVRRL 166

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              A+                     A      +  F+A+ SHELRTPL  ILGF E + 
Sbjct: 167 VHLADHSG------------------AHAAEKMRVDFVANASHELRTPLAGILGFIETLA 208

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              +G  ++ET + ++  +    + +  LI++++ LSRIEA +Y   +SA+ L  +V E 
Sbjct: 209 DPDLGK-DDETRQRFLKIMDGEARRMQRLIDDLISLSRIEAEKYRAPDSAVDLSGLVAEV 267

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + + +    E+  E+   I P L  V  D   + Q++ NL+ N+VK+   G  + VT+  
Sbjct: 268 VGVFRTSHGERGREVEMDIAPDLPDVQGDRAQLSQLLHNLIGNSVKYGKAGTPIRVTLND 327

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  +++ D G GI    +P +   F +       A  G GLGL I + I+  H G+
Sbjct: 328 GPSGMTRLTVADEGEGIGPDHLPRLTERFYRVDSGRSRAIGGTGLGLAIVKHIVERHRGR 387

Query: 456 FLIRSKLREGVEVIAILPNTRVLN 479
             I S L +G  +  +LP   V  
Sbjct: 388 LDIASALGKGTAISILLPRVVVEE 411


>gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 1048

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +A           L + LAG   +       +     ++  +      +         + 
Sbjct: 259 MAGGLWGDPVEDALVVPLAGEAGSEPLGVLILGVSPSRALDEGYRGFLDLVAGQVSTALR 318

Query: 232 KSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + + +E R+RAE   E + AK+RF +++SHE RTPL  +LG  E        P      
Sbjct: 319 NARAYEEERRRAEALAELDRAKTRFFSNVSHEFRTPLTLMLGPLE---EALRDPGIAPGS 375

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++ +   HR+   LL L+N +LD SR+EAGR E + +   L  +  +     +   +   
Sbjct: 376 RKELEVAHRNALRLLRLVNTLLDFSRVEAGRVEATFAPADLAALTADLASTFRSAVERGG 435

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +     P   +V+ D     +V+LNLLSNA KFT   G + V +G        +++ D
Sbjct: 436 LALRVDCLPLPETVFVDRDMWEKVVLNLLSNAFKFTFH-GSIDVRLGPGPAD-VCLTVAD 493

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI    +P V   F +       + +G G+GL + + +++ HGG   +RS L +G  
Sbjct: 494 TGVGIPAEALPHVFDRFHRIEGTRSRSHKGSGIGLALVRDLVSLHGGDVEVRSTLGQGTT 553

Query: 468 VIAILPNTRVLNFIPED 484
               LP  R  + +P D
Sbjct: 554 FTVTLPFGR--SHLPAD 568



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 119/359 (33%), Gaps = 35/359 (9%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           A ++ AL        +     PV+  ++    +       ++  ++ +A +        L
Sbjct: 649 AAALEALRKAPADLLLTDVMMPVLDGIALTRAVRADPALRTVPVIMLSARAGAEAGVEGL 708

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----K----SRFLASMSHE 259
                  L       +L A     ++  + +R RAE +  A    K     +    ++H+
Sbjct: 709 EAGADDYLVKPFSARELQA---RVRANLELSRLRAEAQEQAVQTRKMDAIEQLTGGVAHD 765

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
               L A++G  E+ E +      +E     + +  ++ Q    L  ++L  S     + 
Sbjct: 766 FNNLLAAVMGSLELAERKV----TDERALRLLHNAMQAAQRGARLTEQLLAFS----LKQ 817

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L    + L  ++      L  R       +  ++   L    AD   +   +LNL++NA
Sbjct: 818 RLEAHPVDLNGVLSAMAEQLH-RTLGGGTAVVTRLAADLWPAVADPHRIELAVLNLVTNA 876

Query: 380 VKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
                  G + +                +G    +++ D G G++   +      F    
Sbjct: 877 RDALQGAGEIRIETENLPAGAPRPGTVPAGDLVVLTVADTGDGMSPDVLARAFEPFF--- 933

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              K   +G GLGL          GG   +RS+  EG      L    V+     D  +
Sbjct: 934 -TTKPQGKGTGLGLAQVYGTARQLGGAITLRSRHGEGTTASIYLLRGEVVAGADADRTQ 991


>gi|21112215|gb|AAM40473.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574704|gb|AAY50114.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 304

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 16/287 (5%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-----------RAEEE---NLAKSRFL 253
             + V  +   AE + L  + +  +   DET +           +AE+    +  KSRFL
Sbjct: 15  HANEVPAIDAMAELESLRQQNQALREELDETNQGVLALYAELDQQAEQLRDVSELKSRFL 74

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSHE RTPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++
Sbjct: 75  SYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSASTRELSEMVDDLLDLAK 133

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAGR  +S     L+D+      M +         +  +  P L  ++ D+K + Q++ 
Sbjct: 134 IEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDPPVLPMLYTDDKKLAQILR 193

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           N +SNA+KFT   G V V            S++D G GI       +   F Q    ++ 
Sbjct: 194 NFISNALKFTPQ-GHVRVFAQLQGDTHVRFSVQDTGIGIPAELHDALFEDFVQVDSPLQK 252

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              G GLGL I +      GG   I S + +G E   +LP T     
Sbjct: 253 RLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLPVTLAPQQ 299


>gi|330501197|ref|YP_004378066.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328915483|gb|AEB56314.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 749

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/330 (25%), Positives = 146/330 (44%), Gaps = 11/330 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V  +       +      S               L      ++ ++K 
Sbjct: 419 ASGVLAMSLPKPVDNAVLWFRPEVKESINWSGDPRKPMGLENSDAGLRLRPRTSFEIWKV 478

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEEENLAKSRFLASMSHELRTPLNA 266
            +  +S +  + DL A  ++ +S    D  R+  R +E   A+   +A +SH+LR P+  
Sbjct: 479 EMAGISTKWSQGDLFAAKDLRRSALEHDLARQVLREQEAVRARDELVAVVSHDLRNPMTV 538

Query: 267 ILGFSEVIELE--TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      +  + ++   +  L+ ++LD S+I+AGRY ++  
Sbjct: 539 ISMLCSMMQKTFSSDGPHTSRRIATALDTMQQAAGRMNTLLEDLLDTSKIDAGRYTITPQ 598

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + +  +  E   +L   A +K+I I  + DP L  + AD + + QV+ NL+ NA+KFT 
Sbjct: 599 KLDVGHMFEEAQSLLAPLALDKDISISFEADPDL-RIHADPERLFQVLSNLIGNAIKFTP 657

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V V      G     S++D+G GI E  +P V   +        +   G GLGL I
Sbjct: 658 RRGTVGVRAKSV-GGDIVFSVRDSGEGIPEEHLPHVFDRYWTAKDGNPT---GTGLGLYI 713

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q I+  HGG  ++ S+L +G E    +P 
Sbjct: 714 TQGIVEAHGGHIVVESELGKGSEFQFTVPA 743


>gi|228944402|ref|ZP_04106775.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815304|gb|EEM61552.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 462

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPSEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVMSEVDHGSCFIISLP 454


>gi|229166865|ref|ZP_04294612.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
 gi|228616493|gb|EEK73571.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
          Length = 351

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 151/358 (42%), Gaps = 20/358 (5%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            IG    L   +         +  + S++++ A  I+         +  + F  +V+  +
Sbjct: 9   VIGAIVALFAFLTIIWS----IAFFVSSSVMKAFEINVSPFISFLISDMVGFVFIVLIWT 64

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
              I+     +  +  ++                 +VKI + +    ++   ++    ++
Sbjct: 65  LIGILMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMT 118

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           DE           +  F++++SHE+++PL +I GF+  ++ + +     E  K Y+  I 
Sbjct: 119 DELN----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---PVEKRKHYLTIIE 171

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                L  L   +L L+ +E+  Y    +   L   +++ ++  +    EK +E+   +D
Sbjct: 172 TETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMD 231

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD++ M QV +NL+ N++KFT  GG + + +         +SI D G GI+E 
Sbjct: 232 K--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKE-FLEVSIHDTGIGISEE 288

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   F +   +   A  G GLGL I + ++  H G+  + S    G E I  +P
Sbjct: 289 QKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346


>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 946

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E  + AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +    +     
Sbjct: 449 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++             K + 
Sbjct: 505 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 564

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLLSNA+KFT   G + + V   +G    IS++D 
Sbjct: 565 LYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQC-AGDYLQISVRDT 622

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E+  +   F Q    ++   QG GLGL I + +++   G   + ++   G   
Sbjct: 623 GEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRF 682

Query: 469 IAILPNTRVLNFI 481
              +P   V N  
Sbjct: 683 TIRIPLYGVQNTP 695


>gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 494

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 244 MIDDQERLEFEEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 299

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 300 EDLELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQL 359

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-G 400
           R + + +EI       +     D   + Q+ +NLL+NAVK T   G +       +    
Sbjct: 360 R-KPEGVEITLDACSDII-FNIDRNRLWQICMNLLTNAVKHTKK-GSIWFGYTLEAEGKM 416

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGLGL I + ++   GG   + S
Sbjct: 417 VKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLGLAICKGLVLKMGGNISVMS 472

Query: 461 KLREGVEVIAILPNTR 476
           K   G   I  LP  R
Sbjct: 473 KEGFGSTFIFTLPMKR 488


>gi|241895844|ref|ZP_04783140.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241870887|gb|EER74638.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 627

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     + +F++++SHELRTPL ++  + + ++   +   + E    ++         ++
Sbjct: 375 QRTERERRQFVSNVSHELRTPLTSVKSYVDALQDGAV--EDPEVAHNFLQVAQDETTRMI 432

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPS 357
           ++IN++L+LSR+++G  +L +  I++  +    +    +     +       I + I   
Sbjct: 433 HMINDLLELSRMDSGTMKLEKEYINIAALFNYILDRFDMIIANDDKPEKYYTIKRMIPQL 492

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D     QVI N+++NA+K++  GG +   +         +SI D G GI +  +
Sbjct: 493 QIWVEIDTSKFTQVIDNIMNNAIKYSPDGGVITARLE-DRDSEVVLSITDQGLGIPKSNM 551

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F +   A   A+ G GLGL I++ I+    G+  + S   EG      LP   
Sbjct: 552 KQIFDRFFRVDKARSRAQGGTGLGLAISKEIIERFNGRVWVESTEGEGSTFSIALPYEP 610


>gi|85708496|ref|ZP_01039562.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85690030|gb|EAQ30033.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 421

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + A + F+A+ SHELRTPL AILG+ E +  E+   L++ T ++++G I R GQ L NLI
Sbjct: 165 SRAHTDFVANASHELRTPLAAILGYVETL-RESGDSLDSPTSQKFLGIIEREGQRLQNLI 223

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           ++++ LSR+EA +++L E+ + L  +            +   +++    D     V  D 
Sbjct: 224 SDLMSLSRVEAEKHDLPETRLELAALTERAACDAAGTNRIDRLKLEILSD---PLVKGDL 280

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + + QV+ NL+ NA+K+ +    V V +  +      I++ D G GIA  ++P +   F 
Sbjct: 281 QQLEQVVRNLVDNALKYGSADTSVTVRLDRSQDGMARIAVTDQGDGIAPEQLPHLTRRFY 340

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +       A  G GLGL I + I+  H G+  I S L +G  V+  LP  +      + +
Sbjct: 341 RTDPGRSRASGGTGLGLAIVKHIVERHRGRLNIDSDLGKGTRVVVRLPVAKAKRNASDQS 400

Query: 486 HES 488
            E+
Sbjct: 401 SET 403


>gi|304380924|ref|ZP_07363583.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304340510|gb|EFM06445.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 421

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 194 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 251

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 252 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 310

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 311 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 369

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 370 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 419


>gi|302873388|ref|YP_003842021.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307688442|ref|ZP_07630888.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302576245|gb|ADL50257.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 481

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 142/331 (42%), Gaps = 14/331 (4%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           +I+  + A    + P     +     +    +        +  +  +++  +     +  
Sbjct: 135 IISCFVFAWVLLIPPKISVTTLIAGAIGFLIRVRFEGLPHNAWMGVLISVVICTIFSVIM 194

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +  +                   +  E  ++ E     +  F A++SHELRTP+N
Sbjct: 195 SINSYSNFLGQYIN------------NKMLVEINRKLEALEKDRLEFFANISHELRTPIN 242

Query: 266 AILGFSEVIE-LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            I   +++I           +   +Y   I ++   L+ L+  ++D+++I++  +E+   
Sbjct: 243 IIYTANQMINVTNKNSSCPIKALSKYSNMIQQNCNRLIRLVENVIDITKIDSLSFEVRLI 302

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              +I+I+ E    ++   ++K ++I+   +     +  D   + ++ILN+LSN++KFT 
Sbjct: 303 NADIINILEETYFSIRDYVEKKGLKIYFNTNIDKKIIACDPYNIERIILNILSNSIKFTK 362

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG + +++  +     YIS+ D G GI E  I  +   F Q   +     +G G+GL +
Sbjct: 363 PGGEIKISIT-SDENFVYISVSDTGIGIPENMIDRIFERFVQVDKSTMRQNEGSGIGLSL 421

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + ++  H G   + S L +G E I  LPN 
Sbjct: 422 VKGLVELHNGTISVNSVLGKGSEFIIKLPNK 452


>gi|229059659|ref|ZP_04197037.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
 gi|228719672|gb|EEL71271.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
          Length = 351

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 151/358 (42%), Gaps = 20/358 (5%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            IG    L   +         +  + S++L+ A  I+         +  + F  +V+  +
Sbjct: 9   VIGAIVALFAFLTIIWS----IAFFVSSSLMKAFEINVSPFISFLISDMVGFVFIVLIWT 64

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
              I+     +  +  ++                 +VKI + +    ++   ++    ++
Sbjct: 65  LIGILMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMT 118

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           DE           +  F++++SHE+++PL +I GF+  ++ + +     E  K Y+  I 
Sbjct: 119 DELN----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---PVEKRKHYLTIIE 171

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                L  L   +L L+ +E+  Y    +   L   +++ ++  +    EK +E+   +D
Sbjct: 172 TETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMD 231

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD++ M QV +NL+ N++KFT  GG + + +         +SI D G GI+E 
Sbjct: 232 K--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKE-FLEVSIHDTGIGISEE 288

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   F +   +   A  G GLGL I + ++  H G+  + S    G E I  +P
Sbjct: 289 QKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESVEGNGTEFIVRIP 346


>gi|168704693|ref|ZP_02736970.1| CheY-like receiver protein [Gemmata obscuriglobus UQM 2246]
          Length = 718

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AK  FLA++SHELRTPLN I+G +++    T+G       ++ +  +  S   LL L+
Sbjct: 223 SRAKGEFLANVSHELRTPLNGIIGMTDL----TLGGELPPDQRDRLLLVRESAGTLLTLV 278

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N++LDL++IEAGR +L+     L  +V   + +L  RA+ K + +   I P +      D
Sbjct: 279 NDLLDLAKIEAGRLDLAPVRFELHRVVGRALRLLAERARNKGLVLRCAIAPEVPTEAVGD 338

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQY-ISIKDNGPGIAEGEIPTV 420
              + Q++ NL+SNA+KFT   G V + V     ++G       + D G GI    +  +
Sbjct: 339 PDRLVQILTNLVSNAIKFT-ENGEVVIHVRAAERSAGGLAVAFEVADTGIGIPADRLEKI 397

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              F Q   +      G GLGL I   +    GG+  + S+   G    A 
Sbjct: 398 FRPFEQADGSTTRKYGGTGLGLSIVDRLTRMMGGRVTVASQPGRGSTFTAT 448


>gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1]
 gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN I+G SE++         +  ++ Y G IH SGQ LL +IN+I
Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLA--AAPENLDPEHRRYAGLIHDSGQALLTIINDI 359

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAG  EL+E   +L D V   + + +  A  K+I +  +  P L   +  D + 
Sbjct: 360 LDFSKIEAGHLELAEQQFNLHDAVTTTLELAKATAGAKDIPLKLEYSPELPGELLGDPQR 419

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--------ISIKDNGPGIAEGEIPT 419
           +RQV+LNLLSNA+KFT   G + + +                  ++KD G GIA   +  
Sbjct: 420 LRQVLLNLLSNALKFT-ESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQ 478

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +F Q   +    + G GLGL I + ++   GG   + S+  +G     I+
Sbjct: 479 IFEAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIKVESEPGQGSSFQVII 531


>gi|325263676|ref|ZP_08130410.1| sensor histidine kinase [Clostridium sp. D5]
 gi|324031385|gb|EGB92666.1| sensor histidine kinase [Clostridium sp. D5]
          Length = 436

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 6/300 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            L + A+  + V+ I    ML  A     + T  L K   ++      ++ +  E+    
Sbjct: 143 GLVSTALSVLPVMCILAGAMLVIAWLMAKWQTARLIKPINELDLEHPLENTVYEEMTPLL 202

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              D   K  +  +  +  F A++SHEL+TPL +I G++E+++   + P +      +  
Sbjct: 203 EAMDRQNKEKDAVSQMRKEFSANVSHELKTPLTSISGYAEIMKNGMVRPEDVPN---FSD 259

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I++  + L+ L+ +I+ LS+++    EL + A+ L  + RE +  L  +A  K + I  
Sbjct: 260 RIYKEARRLITLVEDIIKLSKLDEESVELEKEAVDLYALCREIVSRLSPQANAKKVHIVV 319

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           + +P         + + ++I N+  NA+K+   GG+V V VG T    + +SI DNG GI
Sbjct: 320 EGEP--VVYRGIRQILDEMIYNVCENAIKYNVTGGQVSVWVGNTLQGPK-VSITDNGIGI 376

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +     +   F +   +      G GLGL I +     HG +  + S+  +G  +    
Sbjct: 377 PKEHHERIFERFYRVDKSHSKESGGTGLGLSIVKHGALLHGAKVTVDSEAGKGTRIDIKF 436


>gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 152/383 (39%), Gaps = 35/383 (9%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA--LSISALSNFMLPYAVFLSFFPVVVALST 176
                +      T     +T+   A   +    +   L           S  P++ A+ST
Sbjct: 155 AIIGNIPDGLLVTNDRARITMANPALGGMFREAAGGNLVGRDCREVFADSLGPMLAAIST 214

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
               ++ V      G + +A+    Y      +  +  L       D+  + E+      
Sbjct: 215 SQQQAVTVQVELAGGRIGSAIGTAIYRGGAGQEEFIGYLIV---VRDITHQKEI------ 265

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEY 290
                       K  F++++SHELRTPL ++LGF+ +I  +  G      P  +   +  
Sbjct: 266 ---------ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316

Query: 291 -------IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  I  I   G+ L  LINE+LDLS++EAG+ E     ++  +IV+  +       
Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
            E   E+  +++P L  +  D   + QV++NL++NA KFT   GRV V     +G     
Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFT-DHGRVTVRARRAAGEEAVL 435

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             + D+G GI    + +V   F Q    +    +G GLGLPI + I+  HGG     S  
Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495

Query: 463 REGVEVIAILPNTRVLNFIPEDN 485
             G      LP   V+    E  
Sbjct: 496 GAGSTFRFTLPTAAVVGSTAERE 518


>gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 346

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 120/320 (37%), Gaps = 9/320 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEK 221
                  +           + +   +L   +    S        + +S    +   +   
Sbjct: 29  ANAGATALFGGWIIGRSHGLALRHPALLEQIDAVRSGEASAKLRIERSEQAGVTQYKVRI 88

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L      A  L         E    +  F+A++SHELRTPL +++GF E +       
Sbjct: 89  SALTGGAAGALVLHFTDITHLRETEEMRRDFVANVSHELRTPLTSVMGFIETLR--GPAR 146

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            +      ++G +      +  LI+++L LS++EA   +     + L  ++ E I  L+ 
Sbjct: 147 NDPAAQDRFLGIMEAEAGRMNRLISDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRP 206

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           RA +    +    D + + V  D   + QV LNL  NA+K+   G  V + +    G G 
Sbjct: 207 RADDAGNRLELIHDDAPALVRGDHDQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGI 266

Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  + + D GPGI    +P +   F +          G GLGL I + I+  H G+
Sbjct: 267 NGRAMIRVDVTDQGPGIDSQHLPRLTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGR 326

Query: 456 FLIRSKLREGVEVIAILPNT 475
             I S+   G      LP  
Sbjct: 327 LKITSQQGHGSTFSVQLPVE 346


>gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQIHL-YDEGTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGISKSDMAKIFERFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|119896946|ref|YP_932159.1| putative two-component sensor histidine kinase [Azoarcus sp. BH72]
 gi|119669359|emb|CAL93272.1| putative two-component sensor histidine kinase protein [Azoarcus
           sp. BH72]
          Length = 1167

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 192/470 (40%), Gaps = 38/470 (8%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK-------VMNSDIKIGEV 103
           +  +  L+ + +  W T+   +       +A         ++           D      
Sbjct: 497 VALVAALVTSPLIAWATKGRYYLARPPEPVATAGRAWVATRRCAICGQDFEPEDTSHCPA 556

Query: 104 YVWRIWLLVGQI------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           Y   I  L   +             +   W+ L           Y+       LL+   +
Sbjct: 557 YQGTICSLCCSLDARCGDLCKPHARLSAQWSALVRRLVPGGLQPYIDGGLGHYLLLMGGV 616

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           +     +L    +     +   ++  A+  + V   +   +++    ++  +T+      
Sbjct: 617 TGFLVLLLGTLYYHEVLALGPDVARGALQGVLVKTFAALVLVSGIGVWWMVLTHKSRHVA 676

Query: 212 VKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +  + Q +     I             R+ AE+ N AKSR++ S+SHELRTPLN+ILG+
Sbjct: 677 QEESNRQTQLLMQEIESHRRTDEQLQNARRVAEQANQAKSRYVTSISHELRTPLNSILGY 736

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++++             ++ +  I +SG+HLL+LI   LD++RIE+G++ L    ++   
Sbjct: 737 AQIL---DGDEAIPPHRRQAVSVIKKSGEHLLSLIEGTLDIARIESGKFALDMRPLAFPA 793

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            V + + M + +A++K ++   +   +L   V ADEK +RQ+++N++ NA+KFT   GRV
Sbjct: 794 FVHQLVGMFEPQARDKGLDFVFETVGTLPEVVRADEKRLRQILINIIGNAIKFTPR-GRV 852

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-----KSAEQGVGLGLPI 444
            V + +       I ++D+GPGIA GE+  +   F +GS A                  I
Sbjct: 853 GVKLTYRRE-MALIEVEDSGPGIAAGELQQIFEPFARGSSARTTTGTGLGLT-------I 904

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
           ++ +    GG+  + S   EG      L   +V     E     TQ   Y
Sbjct: 905 SKMLTDLMGGELSVDSVPGEGSTFRIRLFLPQVHGAQAEAVQPRTQRIGY 954


>gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 569

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 4/240 (1%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               + +  AE  N AKS FL+SMSHELR PLNAILGF++++  E   P    + +  I 
Sbjct: 176 EALKQAQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMASEA--PPPTASQQASID 233

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I ++G HLL LINE+LDL+RIEAG+  LS   +S+ID + EC  ML+ +A ++++ +  
Sbjct: 234 QILKAGWHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRF 293

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   V AD   ++Q++LNLLSNA+K+    G V V V  T G    +S++D G G+
Sbjct: 294 PAVEPPCFVRADRTRLKQILLNLLSNAIKYNRDQGSVDVQVTTT-GHRVGVSVRDTGVGL 352

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +  +   F +         +G G+GL +A+ +    GG    +S    G      L
Sbjct: 353 TPERLAQLFQPFNRLGH-EAGPVEGTGIGLVVAKRLAELMGGTISAKSTPGVGSVFRVEL 411


>gi|284052778|ref|ZP_06382988.1| GAF sensor signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 582

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 138/284 (48%), Gaps = 16/284 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T     + +  +   A     +          +E R  A   +  KS FLA+ SHELRTP
Sbjct: 298 TRQWTAAEIDFVRELATHVGTVIAHATLYQELEEARLEAVALSRLKSEFLANTSHELRTP 357

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF +++        + E  +E+I + H++  HLLNLIN++LD+++IEAG+ ++  
Sbjct: 358 LNGMIGFLQLVLDGM--ADDPEEEREFIEEAHQAAIHLLNLINDVLDIAKIEAGKMDIEL 415

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381
           + + + +++RE    ++ + ++KN+++  + +       V+ + + + QV+LNL+ N++K
Sbjct: 416 ALVKVDEVLREIEHFIRPQVEQKNLKLTIQTEAGNSQIIVYGNYQRILQVMLNLVGNSIK 475

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT  GG +++++G                    + D G G+   +   +  +F Q     
Sbjct: 476 FTHKGG-INISLGIIRENVIIQNQQFPGFVEFRVVDTGIGVPIEKQDRLFQAFSQVDSGY 534

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
                G GLGL I+Q ++   GG+    S     G  V   +P 
Sbjct: 535 TKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIPL 578


>gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 473

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 12/289 (4%)

Query: 207 LFKSNVKILSCQAEK-----DDLIAELEVAKSLSDETRK--RAEEENLAKSRFLASMSHE 259
           ++++N  I    AE+     DD+   +E  K++S++ +   +  E    ++ F A++SHE
Sbjct: 158 IYRNNYYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHE 217

Query: 260 LRTPLNAILGFSEV---IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           L+TPLN ILG  ++   I      P+N E     I    ++   LL LIN ++D + I++
Sbjct: 218 LKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDS 277

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
              EL+    +++++V E    +       NI I    D     +  D   + ++ILNLL
Sbjct: 278 KFIELNMVNCNIVNLVEEITQSVAKYI-NNNISITFDTDLEEKIIACDLDKVGRIILNLL 336

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SN+VKFT  GG + V +         I++KD G GI + ++ T+   F Q   +     +
Sbjct: 337 SNSVKFTEPGGSIFVNI-IDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNE 395

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           G G+GL I +S++  H G   + SK   G +    LP   + N   E+N
Sbjct: 396 GSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAKVLSNGNIEEN 444


>gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 12/289 (4%)

Query: 207 LFKSNVKILSCQAEK-----DDLIAELEVAKSLSDETRK--RAEEENLAKSRFLASMSHE 259
           ++++N  I    AE+     DD+   +E  K++S++ +   +  E    ++ F A++SHE
Sbjct: 15  IYRNNYYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHE 74

Query: 260 LRTPLNAILGFSEV---IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           L+TPLN ILG  ++   I      P+N E     I    ++   LL LIN ++D + I++
Sbjct: 75  LKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDS 134

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
              EL+    +++++V E    +       NI I    D     +  D   + ++ILNLL
Sbjct: 135 KFIELNMVNCNIVNLVEEITQSVAKYI-NNNISITFDTDLEEKIIACDLDKVGRIILNLL 193

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SN+VKFT  GG + V +         I++KD G GI + ++ T+   F Q   +     +
Sbjct: 194 SNSVKFTEPGGSIFVNI-IDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNE 252

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           G G+GL I +S++  H G   + SK   G +    LP   + N   E+N
Sbjct: 253 GSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAKVLSNGNIEEN 301


>gi|224535490|ref|ZP_03676029.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522883|gb|EEF91988.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 754

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  ++  +   +E R  AE+  L K  FLA+MSHE+RTPLNAI+GFS ++       ++ 
Sbjct: 506 IQAIKDREQELEEARLLAEKAEL-KQSFLANMSHEIRTPLNAIVGFSNILA--LDDGVSP 562

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EYIG I+++   LL LIN+IL+LSRIE+G          + ++V    +  Q+   
Sbjct: 563 EERLEYIGSINKNSDLLLKLINDILELSRIESGYMSFEYEKCFVSELVDSIYMTHQMLIS 622

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403
           E  +E  +++D     V  D+  + QVI N L+NA KFT   G + +   + +      I
Sbjct: 623 E-QLEFIKELDAVQVEVMVDKGRLTQVITNFLNNASKFTKT-GYIKLGYRYLSESDRVAI 680

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+    G+  + S+  
Sbjct: 681 YVEDTGRGIELSEQKMIFSRFYKQDE----FSQGAGLGLSICQVIVEKLRGKIELWSEPG 736

Query: 464 EGVEVIAILPNTRVLN 479
           +G     +LP  +  +
Sbjct: 737 KGSRFTVVLPVVKATS 752


>gi|223984504|ref|ZP_03634636.1| hypothetical protein HOLDEFILI_01931 [Holdemania filiformis DSM
           12042]
 gi|223963490|gb|EEF67870.1| hypothetical protein HOLDEFILI_01931 [Holdemania filiformis DSM
           12042]
          Length = 486

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 134/322 (41%), Gaps = 13/322 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P+     T      ++  I +   L  A      I   +   N           D++ 
Sbjct: 168 ISPINATTETLRTQLGYIALIVVVASLGLAYLMSRKIVKPIVNINQSARQMAEGNYDIVF 227

Query: 227 ELE------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                          + T ++ +E +  +   +A++SH+LRTPL  I G+ E++      
Sbjct: 228 TGRGYKEITQLNDTMNHTTRKLKEVDQMRRDLIANVSHDLRTPLTMISGYGEMMRD---- 283

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L  E   E +  I      L NL+N++LDLS+++  + EL      L  +++  +   +
Sbjct: 284 -LPGENTPENVQVIIDEAHRLSNLVNDLLDLSKLQENKIELHIQDFDLTQLIQTVLYRYE 342

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               +   +I  +   S+  V AD   + QV+ N ++NA+ ++    R+ +     +G  
Sbjct: 343 KFMTQDGFDIQFQPAESV-RVNADPDRLGQVLYNFINNAINYSLDDKRIVIR-QRINGNR 400

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             + ++D+G GI+E ++  +   + +     K +  G G+GL I + I+  H  Q+ +RS
Sbjct: 401 VRVEVEDHGEGISEDKLNYIWDRYYKVDKTHKRSSAGSGIGLAIVREILELHHAQYGVRS 460

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           ++ +G      L        +P
Sbjct: 461 EVGQGSVFWFELSMASDSKPVP 482


>gi|118445114|ref|YP_879185.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135570|gb|ABK62614.1| two-component sensor histidine kinase [Clostridium novyi NT]
          Length = 779

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 127/246 (51%), Gaps = 4/246 (1%)

Query: 232 KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +  ++E +K  +E    +  +++F A++SHEL+TPLN IL   + ++ +         + 
Sbjct: 503 RIEAEENKKLLDETISYHQLRTKFFANISHELKTPLNLILSAIQFLQSKGGDDFLRTNFD 562

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +Y   I  +   ++ +IN +LD+++I++G +E      +++++V +  +        KN+
Sbjct: 563 KYGDVIKDNSYRMVRIINNLLDITKIDSGYFETHFDNYNIVEVVEDICLFSSSYINSKNL 622

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +     D     V  D   + + ILNLLSNA+KFT  GG++ V + +  G    ISIKD 
Sbjct: 623 QFVFDTDTEEKIVACDPHLIERTILNLLSNAIKFTKPGGKITVNI-YDKGDFVDISIKDT 681

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++     +   F Q   ++   ++G G+GL + +S +  H G   + S++  G E 
Sbjct: 682 GIGISKSHQEIIFERFFQIDKSLSRNQEGSGVGLSLVKSFVDLHKGSIKLNSEIDRGSEF 741

Query: 469 IAILPN 474
           +  LP 
Sbjct: 742 LITLPV 747


>gi|218904373|ref|YP_002452207.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218538730|gb|ACK91128.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 458

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1007

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 4/327 (1%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           ++L +           VF +   +        I        ++  + A   +    I Y 
Sbjct: 520 LSLELGTQIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQGVIIGYL 579

Query: 207 LFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           L  ++       +AE+  L   L       +  R+ A++ NLAKS FL+SMSHELR+PLN
Sbjct: 580 LIGTDNTARKRVEAERAVLDRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLN 639

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AILGF++++E     P    T K  I  I   G +LL LINEILDL+ IE+G+  LS   
Sbjct: 640 AILGFAQLMESGV--PPPTATQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEP 697

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           I+L D++ +C  M++ +AQ+ +I I      +   V AD   ++QVI+NL+SNA+K+  +
Sbjct: 698 IALPDVLLDCQAMIEPQAQKSDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRV 757

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V VT    + +   IS++D+G G++  ++  +   F +    + S E+G G+GL ++
Sbjct: 758 GGTVEVTCKKVAAQRLRISVRDSGEGLSAEKVTQLFQPFNRLGQEVGS-EEGTGIGLVVS 816

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + ++   GG+   +S +  G      L
Sbjct: 817 KRLVELMGGEIGAQSIVGTGSVFWFEL 843


>gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 875

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 130/251 (51%), Gaps = 4/251 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + +  + +  E  +  E  +  K+ FL+ +S+ELRTPL  I+GF++++     G L
Sbjct: 605 ADVTDRKRFEEVLLERNEALEASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGAL 664

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           NN   +EY+  I  S + LLN+IN+I+DL+ ++AG  +L  + + +  ++    + ++ R
Sbjct: 665 NN-KQREYLDHIKTSSEVLLNIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRER 723

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
               N+ +   I     +V AD   + QV+ NLLSNA+ F+   G + +           
Sbjct: 724 LSRANVNLDVHIASGAGTVMADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNG-VA 782

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           IS++D G GI E E  TV   F   S +  S  +G GLGL + +SI+  H G+  +RS  
Sbjct: 783 ISVQDTGLGIPEEEQATVFDRFE--SRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTP 840

Query: 463 REGVEVIAILP 473
             G  V   LP
Sbjct: 841 GAGTTVTVFLP 851


>gi|260902965|ref|ZP_05911360.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
 gi|308107447|gb|EFO44987.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
          Length = 566

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L F   +         K +   ++    +    ++     E RKRAEE   A   F
Sbjct: 149 VVGELIFSVSLEQIEQAFISKQMELVSDLVHGVISRHLSLEREVELRKRAEESEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +G    E  ++Y+G++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSAELLSKTQLG----EDQRQYLGNLIQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  D+ +    +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI      ++   F Q   + 
Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-NGTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSA 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G      +P   
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPLKE 427


>gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 550

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 134/289 (46%), Gaps = 11/289 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I+   F+ ++K L+       L+  L       ++ R +A         F++ +SH
Sbjct: 267 FSATISGTNFEGSIKWLNKGTVDGRLLIMLHDVTERLEQERLQA--------DFISMVSH 318

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELR+PL +I G   ++  +  G L     +  +   HR+   L+ +IN+ILD+ +I +GR
Sbjct: 319 ELRSPLTSIKGSMGLLLSKAAGQL-PPKAEGLLEIAHRNADRLVLIINDILDMEKISSGR 377

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            +       L ++V E +       Q   ++I      + + +  D   + QV+ NL+SN
Sbjct: 378 LDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSN 437

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A KF+  GG V ++V  T      +S++D G GIA  +   +   F   + + ++ + G 
Sbjct: 438 AAKFSKPGGTVEISVEKTPEN-VCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGT 496

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           GLGL I ++I+   GG     SK   G      LP  +  +  PE++ E
Sbjct: 497 GLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPV-KTRHSGPENDFE 544


>gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1476

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1059 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1119 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1476

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1059 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1119 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1465

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 930  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 986

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 987  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1046

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1047 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1106

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1107 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 950

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 416 SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 472

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 473 NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 532

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
           + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 533 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 592

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 593 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 640


>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1461

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 927  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 983

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 984  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1043

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1044 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1103

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1104 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1151


>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1476

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1059 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1119 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1476

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1059 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1119 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1464

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 930  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 986

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 987  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1046

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1047 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1106

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1107 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1465

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 930  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 986

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 987  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1046

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1047 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1106

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1107 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1464

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 930  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 986

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 987  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1046

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1047 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1106

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1107 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|237734078|ref|ZP_04564559.1| integral membrane sensor signal transduction histidine kinase
           [Mollicutes bacterium D7]
 gi|229382904|gb|EEO32995.1| integral membrane sensor signal transduction histidine kinase
           [Coprobacillus sp. D7]
          Length = 524

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 5/232 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F +++SHEL+TP+ +I G+SE++E   +   + +  K+ +  IH    ++  L
Sbjct: 295 AMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVI--NDKDASKKALDKIHDEVNNMSTL 352

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL +SR+E    ++ +  + L  +V E I  +Q+   +K+  +    +    +  ++
Sbjct: 353 INDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKH--LQVDKELEDITYTSN 410

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + M Q++ NL++NA+K+   GG++ +   +  GR   I + D G GI++ +   V   F
Sbjct: 411 HQHMHQLLSNLITNAIKYNVDGGKIIIK-SYQFGRNIIIEVSDTGRGISKIDQGRVFERF 469

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +          G GLGL I + I+  + G   + SKL EG      LP   
Sbjct: 470 FRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLPMEE 521


>gi|167756094|ref|ZP_02428221.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
 gi|167704086|gb|EDS18665.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
          Length = 565

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 5/232 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F +++SHEL+TP+ +I G+SE++E   +   + +  K+ +  IH    ++  L
Sbjct: 336 AMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVI--NDKDASKKALDKIHDEVNNMSTL 393

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL +SR+E    ++ +  + L  +V E I  +Q+   +K+  +    +    +  ++
Sbjct: 394 INDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKH--LQVDKELEDITYTSN 451

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + M Q++ NL++NA+K+   GG++ +   +  GR   I + D G GI++ +   V   F
Sbjct: 452 HQHMHQLLSNLITNAIKYNVDGGKIIIK-SYQFGRNIIIEVSDTGRGISKIDQGRVFERF 510

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +          G GLGL I + I+  + G   + SKL EG      LP   
Sbjct: 511 FRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLPMEE 562


>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
 gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
          Length = 1464

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 930  SEMKIKFFTNISHELRTPLTLIKGPIQELRER---EKLSPKGLQYVDLMEKNTNQMLQLV 986

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 987  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1046

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + M  VI N++SNA KFT  GG +++T G T    + Y+ ++DNG GI + ++  +   F
Sbjct: 1047 EKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFERF 1106

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H GQ    S   +G   I  L
Sbjct: 1107 SQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|146308781|ref|YP_001189246.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576982|gb|ABP86514.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 802

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 166/452 (36%), Gaps = 39/452 (8%)

Query: 55  FVLLVANIGTWFTQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
              +  N        P  P W+   T  +  +    G +   S +   E   W   LL+ 
Sbjct: 225 LYQVSVNGAGIEYFWPNSPWWANAATPFLIGSAALFGCQFARSFLHTAEHSSWVDRLLLL 284

Query: 114 QIAIGLCWTLLTLVEPGTWTP--EYLTIYKSATLLIALSISALSNFM--LPYAVFLSFFP 169
            +A G    +L L                    ++ A  + A    M    Y +F     
Sbjct: 285 LMACGAVVMVLALSVSYATALRLATYLALLFTVVIFAAGVLAWLRGMRVARYFIFAWTAF 344

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           +   +    ++  H+ ++           F T     +  +    L   A  D + A  E
Sbjct: 345 LAGGIVNTLMVLGHLPNV-----------FLTMYASQIGSALEVGLLSLALADRINAMKE 393

Query: 230 VAKSLSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
               +  E  ++ E  N         K  FLA+++HELRTP+N ++G  E+++   M   
Sbjct: 394 ERTRILQEAGRKLEALNQELADSNRFKDEFLATVTHELRTPMNGVIGSLELMQTVKMDV- 452

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                ++Y      S + ++ ++N+IL L+ ++AG+        SL  +          R
Sbjct: 453 ---ELEQYQKTAAASARDMMRMVNDILALTELQAGKLYPRRETFSLRGLFDGLRAQYAAR 509

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400
           A +K +    ++D SL  ++  D   + Q +  LL NA+KFTA  G V + VG       
Sbjct: 510 ADDKGLAFVLELDDSLPDTLEGDAAKLAQALGYLLDNAIKFTAE-GSVTLQVGRAGSHAD 568

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + + D G G   GE   +   F Q   ++     G+G+GL I + ++   GG   
Sbjct: 569 NLPLSVVVSDTGVGFEPGE-GDLYQRFHQLDGSMTRKYGGLGIGLAICRQLVDLLGGALS 627

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             S+   G      +P       +P     ST
Sbjct: 628 HESQPGVGSRFRLDVPL-----TLPPQQPAST 654


>gi|262382343|ref|ZP_06075480.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295221|gb|EEY83152.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 569

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 12/242 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +  +++AEE +  KS FLA+M+HE+RTPLNAI+GFS+V+  E     + ET  E+   I
Sbjct: 335 LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRLEFSNII 390

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + + L  LI ++LDLS+IE+    L    + +  +++E   M+ LR     IE+    
Sbjct: 391 QSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPS-GIELRLND 449

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +L  + AD+  + Q++ NLL+N++K T   G +      T+   ++  ++D+G GI  
Sbjct: 450 CEALV-MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFF-VEDSGEGIPR 506

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +I ++ + F Q         +GVGLGL I + ++   GG+  + S+L +G      LP 
Sbjct: 507 DKIDSIFSRFVQLDSW----SKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLPL 562

Query: 475 TR 476
            R
Sbjct: 563 IR 564


>gi|255013294|ref|ZP_05285420.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 547

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 315 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 370

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+IE+G+ E   + + L +I         LR    ++++  + D 
Sbjct: 371 SNEFLLQLIGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVA-PDVKVIFESDG 429

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 430 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 487

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 488 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 540


>gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 775

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 9/279 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I +   A+      R+ AE  + AKS FL+ MSH
Sbjct: 355 FWASVVITAQYDASGALRGFSKITRDITDRRAAEIALGTAREEAESASRAKSEFLSRMSH 414

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNAILGF++++        +N   +  +G I R+GQHLL LINE+LD++RIEAGR
Sbjct: 415 ELRTPLNAILGFAQLL-----DMDSNAGQRPQVGHILRAGQHLLGLINEVLDIARIEAGR 469

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLS 377
             L+   ++L  ++ E + ++   A +  I +    +  + S V AD + + QV+LNLLS
Sbjct: 470 LPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPELAADSGVIADRQRLIQVLLNLLS 529

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+   GGRV + V   + R   +S+ D G GI    +  +   F +         +G
Sbjct: 530 NAIKYNRAGGRVSIDVAIEASR-LRLSVLDTGAGITAERLERLFKPFERLDA--DPRVEG 586

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL +++S++    G   ++S    G      LP  R
Sbjct: 587 TGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLELPFVR 625


>gi|153806976|ref|ZP_01959644.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
 gi|149130096|gb|EDM21306.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
          Length = 1344

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N  K RF  ++SHE RTPL  ILG  EV+    +G     T    I  I+++  H+ NL
Sbjct: 816  LNQVKLRFFTNISHEFRTPLTLILGQIEVLMQMDLGT----TIYNRILRIYKNAWHMRNL 871

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I+E+LD  + E G  +L     +L+   R+  +     AQ+K I           SVW D
Sbjct: 872  ISELLDFRKQEQGYLKLKVEEQNLVAFTRQIYMCFYEYAQKKEITYRFDNVEETISVWFD 931

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             K +++VI NLLSNA K+T   G + V V   + +   +S+ D G GI E  I  +   F
Sbjct: 932  SKQLQKVIFNLLSNAFKYTPNKGSIRVEVRMLASQ-AIVSVCDTGVGIPEEHISKIFERF 990

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q   +  S   G G+GL +A+ IM  H G+  + S + +G +    LP 
Sbjct: 991  YQTDNS-SSFTLGTGIGLALAKGIMNMHHGKIDVESTVGKGTKFTLSLPL 1039


>gi|254446526|ref|ZP_05060002.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260834|gb|EDY85142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1236

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/366 (24%), Positives = 154/366 (42%), Gaps = 24/366 (6%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           +   +  P    I   +T +  +  ++  N  L  A  L    + +  +    +S+    
Sbjct: 593 IPLDSGEPGRTLILALSTSMREVIKNSPINPTLALATGLVVLGIALIFAWLFSVSITQPL 652

Query: 187 IS-------------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
                          L  +   +      +   L   + +I    AE   ++ E      
Sbjct: 653 RYISWAAETYGTSGKLVPLPTESKGEVGVLARSLQSLHGQIEERTAELRSILNERRETNE 712

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 + A +   AKS+FLA+MSHE+RTP+N ++G  +++E +          K  +  
Sbjct: 713 KLLAAMEEATQATEAKSQFLATMSHEIRTPMNGLIGILDLLESQV-----PTDAKRQLNI 767

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
              S   LL LIN+ILD S+IEAG+  L  +   +I+++     +    A EK +E    
Sbjct: 768 AQNSADELLLLINDILDFSKIEAGKLTLESTNFDVIELLESISALHAHNATEKGLEFLCT 827

Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDN 408
             PS ++V   D   +RQV+ NL+SNA+KFT+  G + +               I I+D 
Sbjct: 828 PSPSAAAVIKGDPHRLRQVLSNLVSNAIKFTSS-GEIELGAEIIENDLHSKTLRIYIRDT 886

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +  +  +  +F Q + +      G GLGL I++ I+    G  ++ S+  +G   
Sbjct: 887 GIGIEKDHLAQLFKAFRQANASTAREFGGTGLGLSISKKIIEAMRGDIVVESEHGKGSTF 946

Query: 469 IAILPN 474
            A +P 
Sbjct: 947 FAEIPL 952


>gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
 gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
          Length = 510

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 4/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A++SHELRTP+ +I GFSE +        + +    ++  I++    L  
Sbjct: 283 RLEQIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLISFLEIIYKESNRLQM 340

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L+LS+IE   + ++   + L D++     +   R  EKN+     ID  +  V  
Sbjct: 341 LIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDRDV-QVMG 399

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q++ NL++NA+ ++     V + +      G  I I+D G GI + EI  V   
Sbjct: 400 DANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGI-IEIEDQGIGIEKHEIARVFER 458

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A      G GLGL I + ++  H G+  + S++  G  +I ++P 
Sbjct: 459 FYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTIMIVMIPK 509


>gi|116253484|ref|YP_769322.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258132|emb|CAK09233.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1128

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 14/365 (3%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            ++   T       I     L    +I A+    +  A   +   V   +          
Sbjct: 561 AILGKLTTRLGRYGIAVVLALTAIGAILAMIAHQVASASPETGEVVNRTILIVFF----- 615

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
                + +      F+         +  +           IA  +   +     ++ AE 
Sbjct: 616 ---VFSVISGVVCWFYVLAHDSRVVAEEESSRQNTLLLKEIAAHKKTDAALQNAKETAEA 672

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR++  +SHELRTPLNA+LG+++++E +   P      +  I  I RS +HL  L
Sbjct: 673 ANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAP---RQSSIKVIRRSAEHLSGL 729

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           I+ +LD+S+IEAGR ++  + I++ D + + + M + +AQ K +    +  P+L   V  
Sbjct: 730 IDGLLDISKIEAGRLQVYSNEINIQDFLDQIVDMFRPQAQAKGLAFIHERAPALPQFVRT 789

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DEK +RQ+++NLLSNA+KFT   G V   VG+   +    ++ D G GI E ++P +   
Sbjct: 790 DEKRLRQILVNLLSNAIKFTDE-GSVTFDVGYR-SQVATFTVADTGRGITEKDLPRIYEP 847

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G         G+GLGL I + +    GG+  + S   EG      L  + V+  +  
Sbjct: 848 FQRGEAESVRPMPGLGLGLTITRLLTNTLGGEISVASVKDEGSTFRVRLMLSAVMRAVAA 907

Query: 484 DNHES 488
              E 
Sbjct: 908 APQEK 912


>gi|255326450|ref|ZP_05367532.1| periplasmic sensor signal transduction histidine kinase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296490|gb|EET75825.1| periplasmic sensor signal transduction histidine kinase [Rothia
           mucilaginosa ATCC 25296]
          Length = 552

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 141/328 (42%), Gaps = 18/328 (5%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE- 220
               S   +V A    + +    +                 +  H   S V++    ++ 
Sbjct: 234 VSLGSIAVMVGAGVAGSYIIRGTMKPLERVSAVATDVAHLDLEEHTISSAVRVEPRDSDP 293

Query: 221 KDDLIAELEVAKSLSD------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + ++ A       L D      E R+R E +  A   F+A  SHELRTPL AI G+S+++
Sbjct: 294 RTEVGAVGYALNQLLDNVNSALEVRERTEHQIRA---FIADASHELRTPLAAIKGYSDML 350

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                    +E+ +  +  I    + +  L+ ++L L+R++ GR E     + L ++V E
Sbjct: 351 R---WTEPLSESGQSSLARIDSQTERMSRLVEDLLTLARLDEGR-EPKFEQVDLTELVLE 406

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           C   +Q  A+     +          V AD   +++VILNLLSNA K T  G RV   + 
Sbjct: 407 CTSDMQAAARTHEWHLNL--PDEPVEVVADRSQIQRVILNLLSNARKHTDGGTRVTAGLS 464

Query: 395 WTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + R    +++ DNGPGIA   +P +   F +   A   ++   GLGL I Q+I+  HG
Sbjct: 465 VDAARREAVVTVADNGPGIAPDFLPKIFDRFTRADKARSGSDGTTGLGLAIVQAIVQAHG 524

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G   ++S+          LP    L  +
Sbjct: 525 GSIQVQSQPGH-TVFTVRLPLDARLQPV 551


>gi|239636842|ref|ZP_04677841.1| sensor protein ResE [Staphylococcus warneri L37603]
 gi|239597516|gb|EEQ80014.1| sensor protein ResE [Staphylococcus warneri L37603]
          Length = 586

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP+  + G++E I    +     +   E +  +    + L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPIALLQGYTESIVDGVVTE--PDEIHESLAIVLDESKRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + + +  + D++ +  I  + +A +  + +  ++       + D
Sbjct: 419 VNELLNVARMDAEGLSVEKESQPIADLLNKMRIKYRQQATDLELNMQFEVSNQQLWDY-D 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + V       R   +SI D G GIA   +  V   F
Sbjct: 478 MDRMDQVLTNLIDNASRYTQPGDTISVKTD-EDDRSHILSIADTGTGIAPEHLQQVFDRF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + K  +QG GLGL I + I+  HGG   + S++ +G   I  LP 
Sbjct: 537 YKVDASRKRGKQGTGLGLFICKMIIEEHGGTIEVESQVGKGTTFIIKLPK 586


>gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 851

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL++PL A++G S ++  + +G LN   
Sbjct: 330 EQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELNT-R 388

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344
              Y   I+RSG+ L+ L+N++LDL+R+E G+ +LS   +++ +I       +  + Q  
Sbjct: 389 QVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQSK 448

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  + I   I+P+L  + ADE  + Q++++LL NA+KFT   G+V + V          
Sbjct: 449 TDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWE-NWIAF 507

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI E     +   F Q    +    +G GLGL + Q +   HGG     SK  
Sbjct: 508 TVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKEG 567

Query: 464 EGVEVIAILPNTR 476
           +G +   +LP + 
Sbjct: 568 QGSQFTLLLPPSP 580


>gi|304317627|ref|YP_003852772.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779129|gb|ADL69688.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 464

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 143/327 (43%), Gaps = 6/327 (1%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           + ++        V    + + + +         ++ I    + A        +T      
Sbjct: 144 VGSILLSTSIDDVMNFLYSIKMRMIYTFTAIGSIVSILSLIVAAFITKPLKRLTDATKVI 203

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           +      + E        ++A + +D +  +  + +  + RF++  SHEL+TPL AI   
Sbjct: 204 SEGKFDYKVEIRGNDEIGKLADAFNDMS-TKLMKIDDERKRFVSDASHELKTPLAAIKAL 262

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E +       ++   YKE++ DI+     +  L+NE+L L+RI+   + +     ++ +
Sbjct: 263 VEPLISS--DNVDISVYKEFLKDINSEVDRMTRLVNELLVLARID-KIHSIENKTENIGE 319

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           I    +  L+  A++K + +  + D ++     D     ++I N++ N +K+T  GG V 
Sbjct: 320 IAYNVVENLEAIARQKGVSLIFESDKNI-FADVDADRFYRMIYNVVENGIKYTPSGGTVK 378

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           + +  +  +  YI+I D G GI++  +P V   F +G  A      G GLGL I + I+ 
Sbjct: 379 LNLD-SDDKNVYITISDTGIGISQETLPKVFERFSRGDTARSQKTGGFGLGLAIVKEIVD 437

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV 477
            H G   ++S + EG E    +P   V
Sbjct: 438 LHKGHIDVKSTVGEGTEFYITIPVKNV 464


>gi|229523471|ref|ZP_04412876.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
 gi|229337052|gb|EEO02069.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
          Length = 572

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/325 (28%), Positives = 150/325 (46%), Gaps = 9/325 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAE 227
           PV  AL T     +    + L G      S     T   F+  ++      E K++L   
Sbjct: 131 PVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRFRPLLERAISDIEHKEELQKL 190

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           +E+        +K AE+ N +KS FLA MSHELRTPLNA+LG  +++  E+         
Sbjct: 191 VEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSY-----Q 245

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            E +  +  S + LL +IN+ILDLSRIE+G + L    + L   + + ++  +  AQ+K 
Sbjct: 246 VELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKG 305

Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  + + + +     + D   + Q++ N++ NA+KFT   G+V V + +T        +K
Sbjct: 306 VHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQ-GQVDVVLDYTKDG-VVFRVK 363

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  + T F Q   +I     G GLGL I + ++   GG   + S+   G 
Sbjct: 364 DTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGT 423

Query: 467 EVIAILPNTRVLNFIPEDNHESTQY 491
                +P    L  I      S + 
Sbjct: 424 TFTLYIPLQSRLKNIKPSTSSSQKI 448


>gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 459

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQIHL-YEEGTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGISKSDMAKIFERFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1134

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +  R+RAE     + AK+ F +++SHELRTPL  +L   E +  +      +   +  + 
Sbjct: 341 EAERRRAEALAEIDRAKTTFFSNVSHELRTPLTLMLSPVEELLAQERTA-ADPEQRHLLE 399

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +HR+G  L  L+N +LD SRIEAGR         L     E     +   ++  +E   
Sbjct: 400 LVHRNGLRLQRLVNTLLDFSRIEAGRVRAVYEPTDLAHYTAELAANFRSAMEKAGLEFRV 459

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           +     + V+ D     +++LNLLSNA+KFT   G V V +  T+G    + ++D G GI
Sbjct: 460 ECGELSAPVYVDRDMWEKIVLNLLSNALKFTFT-GSVTVRL-RTAGEFVELVVQDTGIGI 517

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              E+P V   F + S A     +G G+GL + Q ++  H G   + S+L  G      L
Sbjct: 518 PSAELPRVFERFHRVSGAKGRTIEGTGIGLALVQELVKLHAGSIEVESELSRGTTFQVKL 577

Query: 473 PNTRVLNFIPEDN 485
           P       +P++N
Sbjct: 578 PLG--TAHLPKEN 588



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 9/253 (3%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            + I E +  + L   + +     N    +F  S SH+L+ PL  +  +S+++  +  G  
Sbjct: 882  EDITERKKQEELIRRSNEELRRANADLEQFAYSASHDLQEPLRQVAIYSQLLGRK-YGSR 940

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRI-EAGRYELSESAISLIDIVRECIIMLQL 341
             +    EY+       Q +  LI+++L  S+  +          +     +      L  
Sbjct: 941  LDGKASEYLTYCIEGAQRMEMLISDLLAYSQATKTSNPSAEPEFVDANGALEAVRKNLAT 1000

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG 400
              +E    I       L  V  D   +  V  NL+SNA+K+       V +         
Sbjct: 1001 TIEETRAVIT---AAHLPVVHGDGVPLMHVFQNLISNALKYRGKERPDVRIWAEQ-DSGW 1056

Query: 401  QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               +++DNG GI +     V   F +     +    G G+GL I Q ++  +GG+  + S
Sbjct: 1057 WRFAVQDNGIGIPKPYQEQVFGIFKRLHD--RKDYPGTGIGLAICQRVVERYGGKIWVES 1114

Query: 461  KLREGVEVIAILP 473
              R+G      LP
Sbjct: 1115 DGRQGSTFFFTLP 1127


>gi|257790765|ref|YP_003181371.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474662|gb|ACV54982.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 572

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 142/334 (42%), Gaps = 10/334 (2%)

Query: 143 ATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
           A + I  ++S L    L      +        +   +A       +++            
Sbjct: 229 ACVGIYFAVSKLVLHPLDALGRAAKQIGAGDFSYQLEARTVGGPDELTEFA---DDFDKM 285

Query: 201 TYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                 L+      +  Q +K   L   L   K    +   R  EE   K+ F A MSHE
Sbjct: 286 ARQLERLYTDLESEVRSQTDKLSALNDLLLYQKVELKKALDRLSEETAYKNEFFAIMSHE 345

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL +IL F+ ++         +   +  + +I  +   LLN++N IL +S+ EA + 
Sbjct: 346 LRTPLTSILAFARILR---GVDSLDAKTRSAVEEIEANATLLLNMVNNILTISKAEAHKN 402

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           EL    +  +D++      L+  A+ K I +  K D  +    AD + +R+++ NL+ NA
Sbjct: 403 ELVVEPVDFVDLLGFIRKSLEPVAKNKGIALTAKTDADVPVSMADWEKLRRIVENLVDNA 462

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +K+T +GGRV V   +  G    +S+ D+G GI E +   +   + Q   +     +G G
Sbjct: 463 IKYTHVGGRVDVRATF-DGACIVVSVADDGMGIDEADQEGIFERYRQAGQSPNRRYRGTG 521

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL + + +   HGG   + S  + G      +P
Sbjct: 522 LGLAVVKELAELHGGSVSVASARKLGSTFTVRIP 555


>gi|186474903|ref|YP_001856373.1| histidine kinase [Burkholderia phymatum STM815]
 gi|184191362|gb|ACC69327.1| histidine kinase [Burkholderia phymatum STM815]
          Length = 482

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 150/353 (42%), Gaps = 10/353 (2%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I  SA     +S++       P         ++ +L  Q   S  +   +       ++ 
Sbjct: 117 IQSSAEQGTVVSMARFLPNDRPEMALTGIDAIMRSLVQQNPTSARMHSETNDETARRSMD 176

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSR 251
                   L  +  ++   Q E   L  ELE          +  DE        +  KSR
Sbjct: 177 ELHEQNRELLSTLTELRDRQDELSRLTQELEATNRGVVALYAELDERADELRRADAMKSR 236

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FL++MSHELRTPL++I   S ++     G L+ E  ++ +  I +S + L  ++N++LDL
Sbjct: 237 FLSNMSHELRTPLSSIRALSNLLLNRLDGDLSGEQERQVL-LIRKSAEDLSEIVNDLLDL 295

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           ++IEAGR +++        +      ML     +  +++  +    L S++ADE  + Q+
Sbjct: 296 AKIEAGRTDVTPVWFKAAGLFAALRAMLTPLLTDPAVKLIFEDTHGLPSIFADEAKLTQI 355

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           + N +SNA+KFT   G + V             ++ D G GIAE     +   FGQ    
Sbjct: 356 LRNFVSNALKFTER-GEIRVGAHLEPDGQHVTFAVVDTGIGIAEEHQQVIFEEFGQVQNH 414

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           ++   +G GLGLP+ + + A  GG   + SK   G      LP        P+
Sbjct: 415 LQQRVKGTGLGLPLCRKLAALLGGHAGVDSKPGVGSTFYLTLPLEAKAAAGPD 467



 Score = 41.0 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLT 422
           D+  +   +  +  NA ++   GG V  T    +  +   I ++D GPGI    + +VL 
Sbjct: 36  DQTRIASAVSEIARNAFEYAH-GGEVTFTFDAAAKPQALLIDVRDKGPGI--RNLESVLE 92

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNF 480
                      +  G+G G+  ++ +M     +  I+S   +G  V     LPN R    
Sbjct: 93  -------GTYRSPTGMGCGIAGSRRLMD----RCEIQSSAEQGTVVSMARFLPNDRPEMA 141

Query: 481 I 481
           +
Sbjct: 142 L 142


>gi|153810324|ref|ZP_01962992.1| hypothetical protein RUMOBE_00705 [Ruminococcus obeum ATCC 29174]
 gi|149833503|gb|EDM88584.1| hypothetical protein RUMOBE_00705 [Ruminococcus obeum ATCC 29174]
          Length = 640

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 8/255 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +  + L  E  + A+  N AKS FL +MSH++RTP+NAI+G++E+ E     P   E
Sbjct: 243 ENEQKQQKLLQEAARLADSANKAKSTFLFNMSHDIRTPMNAIIGYAELGEKHLKEPTILE 302

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +Y   I   G+ +L+LI+ IL+L+RIE  +  L E+   +      CI M +   +E
Sbjct: 303 ---DYFEKILLCGKKMLHLIDNILELARIENNQATLDETITDVSKNFDLCIDMFRKPIEE 359

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQY 402
           K+  +    +     ++ D+    ++ +N+LSNAVK+T  GG +  T+            
Sbjct: 360 KHQTLKVNKNIRYPYLYMDDARSSEITINILSNAVKYTGEGGNISCTLNQYPGEKEGWSV 419

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +   I DNG G++E     +  SF Q   +  S  +G GLG+ I + ++    G+  ++S
Sbjct: 420 LELIIADNGIGMSEEFQKHIFESFSQERSSSDSGIEGSGLGMGIVKKLVDLMNGKITVQS 479

Query: 461 KLREGVEVIAILPNT 475
           K   G      LP  
Sbjct: 480 KPGAGSTFTITLPLK 494


>gi|237746831|ref|ZP_04577311.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229378182|gb|EEO28273.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 872

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +++++ A+ +  +    AE+ N AKS FL+ MSHE+RTP+NAI+G + +         + 
Sbjct: 322 LSDIKQAQQVLKDALFNAEKANEAKSSFLSRMSHEIRTPMNAIIGMTTIAAT---VMNDR 378

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  I  S +HLL LIN++LD+S+IE+G+  +++    L ++++    ++  +A 
Sbjct: 379 AKLENCLSKIALSSRHLLMLINDVLDVSKIESGKMTVTKDPFELGELMQNIGSIIYSQAI 438

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399
            K        +    ++  D   + Q+++N+LSNAVKFT   GRV + V   + R     
Sbjct: 439 TKKQHFEIVTNVRHETLRGDILRLNQILINILSNAVKFTPENGRVRLQVEEIAKRHTDQI 498

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +I D+G G++   +  +   F Q +       +G GLG+PI ++++    G   + 
Sbjct: 499 WLRFTISDSGRGMSPEFLNRLFMPFEQENDGSGKLVEGTGLGMPITKNLVTLMNGTINVE 558

Query: 460 SKLREGVEVIAIL 472
           S   +G      +
Sbjct: 559 SVPGKGTVFTVEI 571


>gi|228959448|ref|ZP_04121137.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800224|gb|EEM47152.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 448

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 QVELPK 448


>gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 828

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL++PL A++G S ++  + +G LN   
Sbjct: 307 EQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELNT-R 365

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344
              Y   I+RSG+ L+ L+N++LDL+R+E G+ +LS   +++ +I       +  + Q  
Sbjct: 366 QVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQSK 425

Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +  + I   I+P+L  + ADE  + Q++++LL NA+KFT   G+V + V          
Sbjct: 426 TDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWE-NWIAF 484

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI E     +   F Q    +    +G GLGL + Q +   HGG     SK  
Sbjct: 485 TVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKEG 544

Query: 464 EGVEVIAILPNTR 476
           +G +   +LP + 
Sbjct: 545 QGSQFTLLLPPSP 557


>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1090

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 155/415 (37%), Gaps = 41/415 (9%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL--- 149
           + N+D    E       L     A  +  +L   +         LT + +    +     
Sbjct: 257 LKNADRAADEATRRLRLLQQMASAANVATSLREAMLMVAHGLPGLTSWYAVGAWVCGDDL 316

Query: 150 --------------SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                          I+   +  L      +   VV +L   A     V    +      
Sbjct: 317 SRTEIDLESPPAPPGITLHFDHDLAEQARATRAVVVGSLPALAATHSLVAVPVIVQDQVL 376

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A++          + + +++   A +  ++AE E + +   E R  A E +  KS FLA+
Sbjct: 377 AVAELLADEVPPDEESRQLVEQVATQLAVVAERERSAAQLAEARDDAMEASRLKSEFLAT 436

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N ++G         +    ++  +    ++  +G  LL +IN+ILDLS+IE
Sbjct: 437 MSHEIRTPMNGVIGL----TDLLLLSELDDHQRRLAENLQGAGLTLLGIINDILDLSKIE 492

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
           +G+ EL  +   +  +  +   +L   A  K +E+     P +   +  D     Q++ N
Sbjct: 493 SGKLELESADFDVRAVFDQVASVLSGPAHAKGLELVVACHPEVPVQLRGDAVRFGQILTN 552

Query: 375 LLSNAVKFTAIGGRVHVTVGWTS----------------GRGQYISI--KDNGPGIAEGE 416
           L SNAVKFT   G V V     +                G    + +   D G GI    
Sbjct: 553 LGSNAVKFTDQ-GEVVVQARVLAEHEHEHESESEPGPGPGHEVVLQVDVADTGVGIEPHS 611

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +  +F Q   +      G GLGL I++ +    GG+  + S+   G      
Sbjct: 612 RERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALGGEIWVESEPGRGSTFSFT 666


>gi|117925659|ref|YP_866276.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609415|gb|ABK44870.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 11/306 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  ++         I            S +A+      EL V        R +A E    
Sbjct: 219 LQLLVEGFNGMLDEIGRQDDALRQHRDSLEAQVALRTTELTVLNGELATARDQALESVRL 278

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+ TP+N ++G  E+++ +T+ P      +EY+     S + LL +IN+I
Sbjct: 279 KSEFLATMSHEISTPMNGVVGMLELLDEKTLSP----QQQEYVEIAKHSAEALLAIINDI 334

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEK 366
           LD S++EAG   L       +  + E + +L  RAQ+K + +  +         V  D  
Sbjct: 335 LDFSKVEAGHLVLESIPFQPLMEMEEVVALLAPRAQDKGVALVTEAQWQVLPGQVVGDPL 394

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422
             RQV+ NL+ NA+KFT   G V V +GW +G+G     + S+KD G GI       +  
Sbjct: 395 RFRQVLTNLIGNAIKFTQQ-GEVVVALGWQAGQGTAGVLHFSVKDTGVGIDADTQKKLFQ 453

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +      G GLGL I++ ++   GGQ  + S L +G      +P       I 
Sbjct: 454 VFTQADGSTTRRFGGSGLGLAISRQLIELQGGQIGVESDLGQGAHFFFSVPMLAAAAPIL 513

Query: 483 EDNHES 488
           E   ES
Sbjct: 514 EPYMES 519


>gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 484

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 150/311 (48%), Gaps = 13/311 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +      V++    +  +    I LA  +   L+  T ++  + K    +      K +
Sbjct: 164 LMKMTLFAVSIGAAVLAIVLAFSIGLANSIVKPLNNITTVSAQMAKGKFNVRIKGDYKYE 223

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L         ++ E  +     N  K  F++S+SHELRTPL +I G+SE ++     P  
Sbjct: 224 LGELSSTLNYMAQEIVR----SNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP-- 277

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  K  +  I +    L+ L+ E+LD S+++    +L +  ++L ++++E ++ L  +A
Sbjct: 278 -EETKIGMQIISKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKA 336

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           ++K ++I  + D     ++ D   ++QV LN++ NAVKF+   G ++++      +   +
Sbjct: 337 EKKGVQIKLESDEK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAM-EEKFVIV 394

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D+G GI++  +  V   F Q +        G GLGL I Q ++  HGG   + S+L 
Sbjct: 395 TVQDHGIGISDEHLRRVKDRFFQVNP----LNGGTGLGLAITQQLVELHGGTMEMESELG 450

Query: 464 EGVEVIAILPN 474
            G  VI  LP 
Sbjct: 451 HGTAVIVKLPL 461


>gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
 gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
          Length = 1416

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 151/396 (38%), Gaps = 27/396 (6%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
           + +   +          +      G  W L  + + G  TP      + A+ L A     
Sbjct: 201 LRAAAGVEPGGPAAAEAIALDADDGAPWPLAAVFQTGRATPVNGLERRLASALKAGP--- 257

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
                          P   AL    + + H + +    +   +        YH F   + 
Sbjct: 258 ------------WPEPCTQALILPVMTAAHPMTVDAFLVAGASPRRALDDDYHSFLQRIA 305

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                A       E E  ++          E + AK+ F  ++SHE RTPL  +LG  E 
Sbjct: 306 AHLAAALASARAYEQERRRA------DALAEIDRAKTAFFTNVSHEFRTPLTLMLGPIEE 359

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +           +    +   HR+G  LL L+N +LD SR+EAGR +       L  +  
Sbjct: 360 LLAAPDPVRPEASQ--ALQVAHRNGLRLLRLVNSLLDFSRLEAGRLQARFVQTDLAKLTT 417

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +     +   +  N+      +P  + V  D +   +++LNLLSNA KFT  GG   V+V
Sbjct: 418 DLASNFRSLMERANLSFTVDCEPISAPVAIDREMWEKIVLNLLSNAFKFTMEGG---VSV 474

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    + + D G GIA  E+P V   F +   A   + +G G+GL +   ++  HG
Sbjct: 475 ALRQRDRVELVVSDTGIGIAAQELPRVFERFHRIEGARGRSFEGSGIGLALVDELVRMHG 534

Query: 454 GQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488
           G+  + S+L +G      +P  R  L  +P    ++
Sbjct: 535 GKVEVASELGKGTTFTVAIPFGRPNLPSLPGAAPDA 570



 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 11/263 (4%)

Query: 232  KSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +   +  R  +     +  K  FLA ++HELR PL  I   SEV+      PL++     
Sbjct: 1038 QEAEERARGVEALRVADRQKDEFLAMLAHELRNPLAPIANASEVLLR---IPLSDPKLSF 1094

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
                I R    L  L++++LD+SRI  GR  L    + L  ++ + +  +  R  E+   
Sbjct: 1095 ATDIIRRQITQLSRLVDDLLDVSRITQGRIVLQRQPVELASVISQAVETIAPRLHERRHR 1154

Query: 350  IFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            +      +P    V  D   + Q + N+L+NAVK+T   G + V    + G    I + D
Sbjct: 1155 LSIDTAGEPRHLWVQGDMARLVQCVGNILANAVKYTDPEGAIRV-WTRSEGELAVIGVSD 1213

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGV 466
            NG GI+   +P V   F Q    +  A  G+G+GL I + ++A HGG    +S  L  G 
Sbjct: 1214 NGTGISAELLPHVFDLFVQSERTLDRALGGLGVGLAIVKRLVAMHGGTISAQSGGLGCGS 1273

Query: 467  EVIAILPNTRVLNFIPEDNHEST 489
                 LP  R+    P     + 
Sbjct: 1274 TFEIRLP--RISQPAPPQAQHAP 1294


>gi|153839227|ref|ZP_01991894.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
 gi|149747255|gb|EDM58243.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
          Length = 566

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L F   +         K +   ++    +    ++     E RKRAEE   A   F
Sbjct: 149 VVGELIFSVSLEQIEQAFISKQMELVSDLVHGVISRHLSLEREVELRKRAEESEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +G    E  ++Y+G++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSAELLSKTQLG----EDQRQYLGNLIQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  D+ +    +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI      ++   F Q   + 
Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-NGTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSA 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G      +P   
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPLKE 427


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 7/317 (2%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
                       + +       +  L + L         F           +        
Sbjct: 262 RGIPLAEASFGPLPVGDWPESPLQALVVPLLQQGGAPYGFLVAALNRYRDLDDHYRGFVE 321

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                IA    +       ++RAEE    + AK+ F +++SHELRTPL  I+G  E +  
Sbjct: 322 LTAGHIASGIGSARSYQAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRT 381

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G    E     +  IHR+G  L  L+N +LD SR+EAGR +     + L  +  E  
Sbjct: 382 RLSGAG--EEVHAELDVIHRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELA 439

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            + +   +   + +          V+ D     +V+LNLLSNA+KFT   G V V V  +
Sbjct: 440 SVFRSAVERAGLTLDVDCPALDEPVYVDRAMWEKVVLNLLSNALKFTFE-GAVRVRVRRS 498

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 + + D G G+ E E+P +   F +   A   + +G G+GL + + ++  HGG  
Sbjct: 499 GPDAVVV-VADTGTGVPEAEMPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTI 557

Query: 457 LIRSKLREGVEVIAILP 473
              S    G      +P
Sbjct: 558 DAESTEGVGTTFTLRIP 574


>gi|47568102|ref|ZP_00238807.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
 gi|47555256|gb|EAL13602.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
          Length = 463

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKEATSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPKLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKHISIAIEDEGEGIPLEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVNHGSCFIISLP 454


>gi|261342654|ref|ZP_05970512.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315302|gb|EFC54240.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 778

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 7/254 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GGRV V +    G      ++D+G GI + E 
Sbjct: 389 PHKVVTDGTRLRQILWNLISNAVKFTPHGGRVAVRIRNEEGDMLRFEVEDSGIGIPQEEQ 448

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S+  +G      +    
Sbjct: 449 DKIFAMYYQVKDSQGGKPATGTGIGLAVSKRLAKSMGGDITVSSQPGKGSTFTLTVHAPA 508

Query: 477 VLNFIPEDNHESTQ 490
           V   + ED  ES  
Sbjct: 509 VAEEV-EDTFESDD 521


>gi|70726234|ref|YP_253148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|68446958|dbj|BAE04542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 565

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    + +L+ ++
Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLIEGA--KNDEESLDMFLNIILKESNRIESLVMDL 399

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE  + E+  + ++L ++    I  LQ +A+ K+I+I  +I+  +  + A E  +
Sbjct: 400 LDLSHIEQ-QTEIETAFMNLSELAYTTIDNLQNQARYKDIKIVSEIEKDVI-IEAHENKI 457

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLLSNA+ ++     V V V    G    + I+D G GI + +   +   F +  
Sbjct: 458 AQVITNLLSNAINYSLENNEVIVRVYR-EGHEVNLEIQDFGIGIDKSDQKHIFERFYRVD 516

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+  H G   + S + EG       
Sbjct: 517 KARSRDSGGTGLGLSITKHIVEAHHGTINVESNIGEGSLFKVSF 560


>gi|168052144|ref|XP_001778511.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162670109|gb|EDQ56684.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 328

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + + AKS FLA+MSHE+RTP++ ILG + ++    + P       E +  +      LL+
Sbjct: 1   QASHAKSDFLANMSHEIRTPIHGILGLTALLLESELTP----DQTESLESVKECADLLLH 56

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362
           +IN +LDL++IEAGR E+ +   ++  +V     MLQ RAQ++ +++  ++D  +   + 
Sbjct: 57  IINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQRGLKLLWEVDKCVPQTLV 116

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIP 418
            D   ++Q +LNL+ N++KFT   G V V                 ++D G GI++ ++ 
Sbjct: 117 GDVGKLQQCLLNLVGNSLKFTHK-GLVTVKGSLNQEAPGRVNVEFEVRDTGIGISQEKLL 175

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q   +      G GLGL I Q  +   GG     S+L +G      LP     
Sbjct: 176 DMFKPFTQAEASTSRLYGGTGLGLCIVQRFVELLGGTISAESELGKGSAFYIRLPFYPNK 235

Query: 479 NF 480
             
Sbjct: 236 PA 237


>gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 572

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 11/273 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I   +  + +  L    E   L   L V K ++ E  ++ E+    +  FL  +SHEL
Sbjct: 308 LRINGRIISTRLTPL--FNENQQLWGILVVLKDVTRE--RKLEDL---RKEFLGDISHEL 360

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL  + G++E +    +   N E +  Y+  I      L  L++E+L LS IEAG   
Sbjct: 361 RTPLTYLQGYTEALLDGLV--ENREEHDRYLNVILEETLRLRRLVDELLQLSHIEAGHLN 418

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           + +  +S+ D++      +     +KNIE+  +I+  + S+ ADE  + QV++NL+ NAV
Sbjct: 419 IKKDRVSIKDLIERVSKKVLPICDDKNIELKIEIE-DIPSITADEDRIEQVMINLIDNAV 477

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++++   ++ +           IS+KD+G GI E E+P +   F +   +    + G GL
Sbjct: 478 RYSSNDSKIIIKAQSCKEG-IIISVKDSGSGIPEDELPFIWERFYKVDKSRTRQKSGTGL 536

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I + I+  HGG+   ++    G E   ++P
Sbjct: 537 GLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569


>gi|213023853|ref|ZP_03338300.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 294

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN ++GF+ +    T+    N T ++++  I RS  +LL +IN++LD S
Sbjct: 1   LANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIINDVLDFS 56

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++EAG+  L      L + + E + +L   + +K +E+   I   +   V  D   ++QV
Sbjct: 57  KLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQV 116

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFGQGS 428
           I NL+ NA+KFT  G   + V     S     I +  +D G GI E +   +  +F Q  
Sbjct: 117 ITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQAD 176

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +I     G GLGL I Q ++   GG     S+   G      +
Sbjct: 177 ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 220


>gi|229089712|ref|ZP_04220973.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
 gi|228693611|gb|EEL47313.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
          Length = 461

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSHINISVT-EEHKRISITMEDEGEGIPSEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|327539007|gb|EGF25641.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 860

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 19/249 (7%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K++FLA+MSHE+RTP++ ILG +E++   ++    +E  + Y+  I  S + LL ++N+I
Sbjct: 321 KNQFLANMSHEIRTPMHGILGTAELMTRSSL----DEQQRHYMYMIQTSAKGLLTVLNDI 376

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S++++G+  L      L D++ + +  + +  + + +++  +    +  +   D   
Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAV-VNLKNEEVDLQFQPPVGVPEIIVGDPTR 435

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT------------SGRGQYISIKDNGPGIAEG 415
           +RQV++NL+ NA+KFT   GRV VTV                G     +I D G G+ + 
Sbjct: 436 LRQVLINLVGNALKFTEQ-GRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQ 494

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  +F QG  +      G GLGL I+  ++   GG+  + S   EG      +P  
Sbjct: 495 QQAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIPLR 554

Query: 476 RVLNFIPED 484
                 P +
Sbjct: 555 TTNGVEPHE 563


>gi|289432838|ref|YP_003462711.1| integral membrane sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
 gi|288946558|gb|ADC74255.1| integral membrane sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
          Length = 473

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +     +     LS + + +      E+A+S +   +   E    ++ R LA ++HELR
Sbjct: 201 ILNRSARQIASGKLSQRVKVNSRDELGELAESFNHMAKN-LENNEQSRQRLLADIAHELR 259

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  I G  + +               ++  I      L  LI ++ D+S  E+G+ +L
Sbjct: 260 TPLTVIEGTVDGMLDGVFAADT-----HHLTTIKEESATLTRLIKDLRDISLAESGKLKL 314

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             + + + DIV+       + A++K+I +   I    S++  D   + Q+  NLLSNA++
Sbjct: 315 EMAQVDIADIVQRQARQASILAKDKSISLITDISSGSSAITGDAIRLNQITSNLLSNALR 374

Query: 382 FTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            T  GG++ +++    +    G  +S+ D G GI   ++P +   F + + +   +E G 
Sbjct: 375 HTPTGGQITLSLKNMLYQGKPGVMVSVADTGEGIPPADLPHIFDRFYRVTTSRARSEGGS 434

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGL I + +   HGG     S L +G      LP +R
Sbjct: 435 GLGLAIVKEMTEAHGGYVWAESTLGKGSTFNYWLPVSR 472


>gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 836

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 4/258 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + + A+    E  +     +  K+ F+  +S+ELRTPLN+I+GFSE++     G L
Sbjct: 569 ADVTDAKRAERALVERNEALVAADRLKTNFIGHISYELRTPLNSIIGFSEMLASPLFGDL 628

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N   +EY+ DI  S + LL +IN+ILDL+ I+AG  +L  + + +  ++   I+ ++ R
Sbjct: 629 -NAKQREYLADIMSSSKTLLAIINDILDLATIDAGAMQLKPTPVGVRALIDAAILGIRER 687

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A    + I   +   ++   ADE  MRQV+ NLLSNAV F+ + G V +   W+      
Sbjct: 688 AVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLSNAVGFSKVNGTVRLAC-WSENGTII 746

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             ++D+G GI +  I  +   F   S +  S  +G GLGL I +S++  HGG   + S+ 
Sbjct: 747 FRVEDDGVGIPKDRIGRIFDRFE--SQSHGSDHRGAGLGLSIVKSLVELHGGTIEVFSEE 804

Query: 463 REGVEVIAILPNTRVLNF 480
             G  V   LP   V   
Sbjct: 805 NRGTRVTVRLPEHPVTPA 822


>gi|229042512|ref|ZP_04190257.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
 gi|229108260|ref|ZP_04237881.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|229148988|ref|ZP_04277233.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228634528|gb|EEK91112.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228675173|gb|EEL30396.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|228726865|gb|EEL78077.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
          Length = 463

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKHISIAIEDEGEGIPLEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
 gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
          Length = 1358

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 137/312 (43%), Gaps = 14/312 (4%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA--KSLSDETRKRAEEENL 247
            A  +     F+  +   +F + + IL        +         +   +E  K+ EE + 
Sbjct: 786  AFKIVIHPPFWDTLAARIFYAILVILLIFGLIYVINRRNRQKMIRMQEEEALKQKEELDQ 845

Query: 248  AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
             K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++ Q+LL+L+N+
Sbjct: 846  MKFRFFTNISHELRTPLTLIITPLDMVIRR----LTDDAMKKQLNTIYKNAQNLLSLVNQ 901

Query: 308  ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
            +LD  ++E     L      + + +          A EK++    + +     ++ D   
Sbjct: 902  LLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHRALYMFFDRDK 961

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + +++ NLLSNA K+T  GG V + +            IS+ D G GI+E ++P +   F
Sbjct: 962  VHKIVNNLLSNAFKYTPEGGTVDLLLATEEIEGRNYVRISVSDTGIGISESDLPYIFDRF 1021

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIP 482
             Q          G G+GL + +  +  HGG+  + S++  G      LP       N +P
Sbjct: 1022 YQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSRIDRGSVFTVWLPMDLKPEPNELP 1080

Query: 483  EDN--HESTQYK 492
            E+    E+   K
Sbjct: 1081 EEIIGTETPDIK 1092


>gi|110680753|ref|YP_683760.1| two-component hybrid sensor and regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456869|gb|ABG33074.1| two-component hybrid sensor and regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 1115

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 180/446 (40%), Gaps = 34/446 (7%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
           L     + ++      V     +  +    P           + +   +L     ++   
Sbjct: 476 LATRGRYYIARPALTKVEATCIVCDYRFDPPDMTHCPFHEGPICSLCCTLDSNCRDACKP 535

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
            G +       L  +    +   L++ +     +   +       L+         NF  
Sbjct: 536 HGRLDNATRRFLEDRFPAPVAQALMSRMSRFVISTTTIGAIIGLLLVFVRDQRDAVNFDA 595

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V  S   +VV +                         +  I+    ++  +      
Sbjct: 596 ILWVVFSMVLIVVGICVW---------------------MYLLISESQQQARSEAEKQSE 634

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                +   E       + +++AE  N AK+R++  +SHELRTPLN+I GF++++E +  
Sbjct: 635 RLLFEVRAHERTDRKLQQAKEKAEAANTAKTRYMTGLSHELRTPLNSIYGFAQILERDED 694

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P+     +  I  I RS +HL  LI  +LD+SRIEAGR ++S   I+L   +++   + 
Sbjct: 695 IPI---RRRNSITTIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSSIF 751

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           +  A+EKN+     +   L   +  DEK +RQ+ +NLLSNA+++T   G+V + + + + 
Sbjct: 752 KEAAREKNLTFTVDVSKFLPVWIVFDEKRLRQIFINLLSNAIRYTDA-GQVSLRITYRNE 810

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D G GI   +   +   F +G+  +    QG GLGL I + ++   GG+  +
Sbjct: 811 -VAVIEVRDTGCGIMAADHKRIWDPFERGNNTVA---QGSGLGLTITKLLVEILGGEIEM 866

Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484
            S    G      L    +L  +P D
Sbjct: 867 ESTPGLGSVFRVRL----MLPSVPAD 888


>gi|332527792|ref|ZP_08403830.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112187|gb|EGJ12163.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1151

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 119/255 (46%), Gaps = 13/255 (5%)

Query: 225 IAELEVAKSLSDE--TRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + + E    L +E   R+  +AE    AKS FLA+MSHE+RTP+NAI+G + ++  +   
Sbjct: 601 LKQAEQKLELLNEELARRVDQAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDAAD 660

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                T +E +  +  + +HLL +IN+ILDLS+IEAGR  L     S  +++   + M+ 
Sbjct: 661 T----TLRERLHKVDDAARHLLQVINDILDLSKIEAGRLALESVEFSRDELMHRVLGMVT 716

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A  K +E+          +  D + + Q ++NLL NAVKFT   G V +     +   
Sbjct: 717 DAAARKGLELVLDTGRLPERLRGDAQHLAQALINLLVNAVKFT-DHGWVRLRGERVAAED 775

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++D G GI       +  +F Q   +      G GLGL + + +    GG  
Sbjct: 776 SRVLVRFEVRDTGIGITAERQARLFEAFEQADTSTTRRYGGTGLGLALTRHLARLMGGDA 835

Query: 457 LIRSKLREGVEVIAI 471
            + S   +G      
Sbjct: 836 GVDSVPGQGSSFWFS 850


>gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2747-71]
          Length = 595

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 90  QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 145

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 146 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 205

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 206 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 264

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 265 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 324

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 325 VAEEVDDAFDED 336


>gi|291568216|dbj|BAI90488.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1262

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 18/289 (6%)

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +     +   +  +  +    + EK   +          +E R+ A+  N AKS FLA+M
Sbjct: 748  IDLLESVAAKMGIALAQANLLEREKQQRLKLATQ-NIALEEARRAADAANRAKSTFLANM 806

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLNAILGFS+++    +    ++     +  I+RSG+HLL LIN+ILDLS+IEA
Sbjct: 807  SHELRTPLNAILGFSQLMADNPIFAEGSQE----LAIINRSGEHLLELINDILDLSKIEA 862

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+         L  ++     M +L+A  ++I +       L   V  DEK +RQV++NL
Sbjct: 863  GKITFEIHPFDLHRLLETLEEMFKLKAANQDIILTINRPIYLPRYVLGDEKKLRQVLINL 922

Query: 376  LSNAVKFTAIGGRVHVTVG--------WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFG 425
            L+NA+KFT   G V +            T          ++D GPGI+  EI  +  +F 
Sbjct: 923  LANAIKFTIA-GEVTLYTKTLPTPKDAETDSNTVLMQFMVEDTGPGISSEEINALFDAFV 981

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q       +++G GLGLPI++  +   GG   + S    G +    +P 
Sbjct: 982  QTETGR-YSQEGTGLGLPISRKFVKLMGGDITVDSTRGVGSKFSFEIPL 1029


>gi|221134745|ref|ZP_03561048.1| two-component system sensor protein [Glaciecola sp. HTCC2999]
          Length = 876

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 12/268 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            + ++    + A+    AKS FLA+MSHE+RTPLN I+GF +++ELE++    N+   E+
Sbjct: 336 QRDIAATANQNAQRALEAKSTFLANMSHEIRTPLNGIMGFFQLLELESL----NKKQHEF 391

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
             +  +S + L  ++N+ILD S++EA +  L +S  SL  ++ +   ++     EK +E+
Sbjct: 392 AQNGLKSTRLLSQIVNDILDYSKLEANKVTLQKSVFSLEMMINDIGSLMSSSLNEKRLEL 451

Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYI 403
           +  ID ++    ++  DE  +RQV++NL+SNA+KFT   G V + +  T           
Sbjct: 452 WLDIDQNMNMNMNILGDETRLRQVLINLVSNAIKFTDE-GFVKIKLTQTALSDDHMTVKF 510

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+G GI + +   +  SF Q ++       G GLGL I QSI+   G    + S+  
Sbjct: 511 EVSDSGIGINQEQQSRIFESFEQANMNTTKKYGGTGLGLNICQSILLLMGSSLAVSSEPM 570

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQY 491
            G      L   +  +     ++ +TQY
Sbjct: 571 VGSTFWFELNFKKADSENLHLSNSTTQY 598


>gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL ++  + E +        ++E    ++  + +    ++
Sbjct: 360 EKLIQMRQEFVANVSHELRTPLTSVKSYVETLLDGAH--KDDEIAPRFLKVVQQETDRMV 417

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID------- 355
            ++ ++L LS+++     +    I+ +D++   I  ++   +++ IE+            
Sbjct: 418 TMVKDLLVLSQLDRKEPIIECRDINFMDVLDRSISAIESLTKDQKIELHLDYKSLEGEYI 477

Query: 356 ------PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                 P    +  D   + QV  N+L NA+K++  G  + +TV         IS+KDNG
Sbjct: 478 DVFNEKPEFIRISGDSDKLTQVFTNILENAIKYSPSGEWIQITVEDYYEN-IKISVKDNG 536

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++P +   F +   A   A  G GLGL I++ I+ NHGG   + S+   G EVI
Sbjct: 537 MGIPAEDLPRIFERFYRVEKARSRARGGSGLGLAISREIIRNHGGDINVSSQEGRGTEVI 596

Query: 470 AILPNTRVLN 479
             LP  + + 
Sbjct: 597 VYLPKNQEVQ 606


>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1472

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + ++        +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELKER---EELSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  I    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSF 424
              +  VI N++SNA KFT  GG ++VT G T      Y+ ++DNG GI + ++  +   F
Sbjct: 1059 DKLSIVIRNVISNAFKFTPSGGSIYVTTGLTDDGKSCYVRVEDNGVGIPQNKLSEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A     QG G+GL +++ I+  H G     S   +G   I  L
Sbjct: 1119 SQGENANNPHYQGTGIGLALSKEIVNLHHGIIRAESPEGQGAVFIVEL 1166


>gi|32476376|ref|NP_869370.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446921|emb|CAD78827.1| sensory transduction histidine kinase-possibly sensor/response
           regulator hybrid [Rhodopirellula baltica SH 1]
          Length = 860

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 19/249 (7%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K++FLA+MSHE+RTP++ ILG +E++   ++    +E  + Y+  I  S + LL ++N+I
Sbjct: 321 KNQFLANMSHEIRTPMHGILGTAELMTRSSL----DEQQRHYMYMIQTSAKGLLTVLNDI 376

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S++++G+  L      L D++ + +  + +  + + +++  +    +  +   D   
Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAV-VNLKNEEVDLQFQPPVGVPEIIVGDPTR 435

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT------------SGRGQYISIKDNGPGIAEG 415
           +RQV++NL+ NA+KFT   GRV VTV                G     +I D G G+ + 
Sbjct: 436 LRQVLINLVGNALKFTEQ-GRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQ 494

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  +F QG  +      G GLGL I+  ++   GG+  + S   EG      +P  
Sbjct: 495 QQAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIPLR 554

Query: 476 RVLNFIPED 484
                 P +
Sbjct: 555 TTNGVEPHE 563


>gi|148255785|ref|YP_001240370.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407958|gb|ABQ36464.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 772

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 8/237 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE E+ AKS FLA MSHE+RTP+N +LG +  +    +    +   +  +  I  SG 
Sbjct: 364 EQAEAESRAKSEFLAMMSHEIRTPMNGVLGLASTLLETKL----DPEQRHAVMTIRESGD 419

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +L  ++N+ILDLS++ AG+ E      S   +V     ++ + A+ K++ +   IDP L 
Sbjct: 420 NLQRILNDILDLSKLNAGKLEFESVDFSPAALVEAVTAIIGVNAKTKSLLVNADIDPKLP 479

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEG 415
             +  D   +RQV++NL SNAVKFT  GG  + V           I   + D G GI   
Sbjct: 480 PALKGDVARIRQVLINLASNAVKFTERGGLTIAVACRTRDDHKATIEWRVSDTGIGIPAD 539

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +  + T F Q   +I     G GLGL I++ I+   GG   + S   EG      L
Sbjct: 540 RVGKLFTDFAQADASINRRFGGTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSL 596



 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 2/182 (1%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
             ++  +      N     W L         L    +   S  K          + +   
Sbjct: 71  AAIILGVFWNHISNAFLTAWGLSIAVAGGLALRGWWRARKSRPKEAS-ERGLRRMTLQAF 129

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            +   W  L L+      PE   I   + +   +S  A +   +P A     + +++A  
Sbjct: 130 FLAAVWGSLPLILMPQIEPELQII-VGSLMTGMISGGAFAMSSVPRAGLTYTWTLMLASV 188

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
              ++      + L   L    SF            ++ L  Q   +     + +     
Sbjct: 189 GSLLLCGGTTYLVLVVFLLLYSSFMVRHLVSHGNVFLENLKAQIRHERQNETISLLLKEF 248

Query: 236 DE 237
            E
Sbjct: 249 QE 250


>gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1239

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 147/268 (54%), Gaps = 11/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  + A+    E   +    N  KS FLA+MSHELRTPLN+IL  S+ +     G LN+
Sbjct: 580 ISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLND 639

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  + +   IHR+G  LL LIN++LDL++IE+G  +L    ++L D++R+    L   A 
Sbjct: 640 KQVR-HADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAA 698

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398
           +K + +  ++DP++  ++ +D   ++Q++ NLL+NA+KFT   G+V +            
Sbjct: 699 QKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEK-GQVELMASLLPADQDGR 757

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +   + ++D+G GIA+ +   +  +F Q   +I     G GLGL I + ++   GGQ ++
Sbjct: 758 QMVQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMV 817

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNH 486
            S+L +G     +LP   V++  P    
Sbjct: 818 NSELGQGATFTVLLP---VVSDAPAATQ 842


>gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 733

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G ++V+    +    +E  + Y+  I  SG+ LL +IN++LD 
Sbjct: 200 FLANMSHEIRTPMNGVVGMADVLTETPL----SEEQRLYVDTIKNSGEALLVIINDVLDY 255

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEA + +L     +L   + E + +LQ  A++K I +       LSS    D   +RQ
Sbjct: 256 SKIEAEKLQLHPEPFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSSDFIGDPGRLRQ 315

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFG 425
           ++ NLL NAVKFT   G V V V              I ++D G GI E  I  V   F 
Sbjct: 316 ILTNLLGNAVKFTTE-GSVTVRVSGKPDEATGKVILQIRVEDTGIGIPEDMIDHVFGEFN 374

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIP 482
           Q          G GLGL I + ++    GQ  + S+   G      +   P   V    P
Sbjct: 375 QVESERNRQFDGTGLGLAITKKLIKMMNGQIWLTSEEGVGSCFGFEIALEPTGPVTLAHP 434

Query: 483 EDNH 486
             + 
Sbjct: 435 ALDP 438


>gi|241951126|ref|XP_002418285.1| histidine kinase osmosensor and regulator, putative [Candida
            dubliniensis CD36]
 gi|223641624|emb|CAX43585.1| histidine kinase osmosensor and regulator, putative [Candida
            dubliniensis CD36]
          Length = 2467

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 10/264 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +L     +  +    E      +  +  AE+    K+ FLA+MSHE+RTP N++L F+ 
Sbjct: 1958 DLLQLFCTQAAVALGKERLLLQMEVAKMAAEDATDEKASFLANMSHEIRTPFNSLLSFAI 2017

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +    +      T +EY+  I  S    LN+I+ IL  S+IE G + L  +  SL D +
Sbjct: 2018 FLLDTKLDS----TQREYVEAIQSSAMITLNIIDGILAFSKIEHGSFTLENAPFSLNDCI 2073

Query: 333  RECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               I +         IE+      P +  V  D    RQ+I+NL+ NA+KFT   G V +
Sbjct: 2074 ETAIQVSGETVLNDQIELVFCNNCPEIEFVVGDLTRFRQIIINLVGNAIKFTTK-GHVLI 2132

Query: 392  TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +              +S++D+G GI +     V  +F Q   + +    G GLGL I++ 
Sbjct: 2133 SCDSRKLTEERVEINVSVQDSGIGIPKKSQNKVFGAFSQVDGSARRQYGGSGLGLAISKK 2192

Query: 448  IMANHGGQFLIRSKLREGVEVIAI 471
            +    GG     S+   G      
Sbjct: 2193 LTELMGGTIRFESEEGIGTTFFVS 2216


>gi|209515313|ref|ZP_03264180.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504294|gb|EEA04283.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 721

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/409 (23%), Positives = 160/409 (39%), Gaps = 19/409 (4%)

Query: 69  NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
                ++    L V +    L   + +   K          +   +              
Sbjct: 67  GTRLAVYIAAMLLVVSFMWLLLLMLDHKLFKPDYQRS--QRIFESEALNRTMVAAAPSGF 124

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                 +   + +S  +    S +      L   +   +     A +         L++ 
Sbjct: 125 ALLSLEQGDILLQSNLMRTYESNTHPDEPGLHTRLLSLYDRSPGAPA-----WQSDLEMP 179

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L             +    ++    +L   ++    I  L+  +   DE R  A+  N A
Sbjct: 180 LRLADGRVDDLLVSMVRTKYRGKEVLLCSFSD----ITTLKNTERKLDEARAAADAANQA 235

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA MSHE+RTPLNAILG  E++    + PL  E     +G +  S   LL +IN+I
Sbjct: 236 KSAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQEER----LGVVTSSSTALLGIINDI 291

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LD S++E+G+  L   +  L  ++R+   M +  A  K +E    ID +L      D   
Sbjct: 292 LDFSKVESGQMTLESISFDLGHVIRQVGAMFEPVAHAKGLEFDCVIDDALAPHYLGDPTR 351

Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           +RQ+ +NL+SNA+KFTA G     V++           I + D G G+   +  T+  +F
Sbjct: 352 IRQIAVNLVSNAIKFTATGDVLLEVYLKDDTAEDSPIVIGVSDTGIGMTLQQQETLFHAF 411

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q   +I     G GLGL +   +     G   ++S+L  G   I  LP
Sbjct: 412 TQADSSIARRYGGTGLGLALCLRLTELMHGTIQVKSELNAGSTFIVTLP 460


>gi|328866981|gb|EGG15364.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1667

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 9/251 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY- 287
                 +D   ++AE    AK  FL ++SHEL+TP+  I G  EV+E        +    
Sbjct: 712 RKKLIEADVALRKAEAATEAKVVFLTTISHELKTPIQGIYGLVEVLEQNIQEENVDINQS 771

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +E +  I  S  +L  L+ +ILD S+IEAG+ +L     S++ ++ E   ++   A +K 
Sbjct: 772 QELLELIRSSANYLFTLVVDILDYSKIEAGKMDLVIKDFSMLKLIEETSNIMSKSAAQKG 831

Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---- 402
           +E+   +D ++  +   D   +R+++LN +SNA+KFT   G++ ++V   +    +    
Sbjct: 832 LELVFYVDYNMPILLEGDANRIRRILLNFISNAIKFTEE-GQIKISVSVIATDLVHSEYT 890

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I+D+G GI   +   +  +F Q   +     QG GLGL I++ +    GG    RS
Sbjct: 891 IKFDIEDSGIGIKPEDQSKLFNAFTQIDSSNSRKYQGTGLGLIISKKLAQMMGGDVGYRS 950

Query: 461 KLREGVEVIAI 471
              +G      
Sbjct: 951 IYGKGSTFTFH 961


>gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 8/311 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLI 225
              +   +         +    +   LA     F     ++ +  + K LS   E     
Sbjct: 122 LSTIQPYVEVPHWQHDRLCLPLMVERLAAGHLVFATHPDNIERDFIVKQLSLVGELLCSA 181

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              ++     DE+ KRAEE   A   F+A ++HELRTPLN +LG +E++   ++ P    
Sbjct: 182 LSRQLIMKRQDESCKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDTSLDP---- 237

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               Y+ ++  SG  L  +IN++LD S++ AG  +L  +     D+      +   +A+E
Sbjct: 238 EQLSYLTNLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKARE 297

Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K IE          + W  D + + Q+++NL+ NA+KFT   G V V   W       + 
Sbjct: 298 KKIEFVVNTRGEFPTYWIGDVERINQILVNLVGNAIKFTHR-GAVTVAARWV-DERLLLR 355

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI      T+   F Q   +     +G GLGL I ++++    G     S   E
Sbjct: 356 ISDTGIGIPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGE 415

Query: 465 GVEVIAILPNT 475
           G E    +P  
Sbjct: 416 GTEFFVSIPLQ 426


>gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 485

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 4/238 (1%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R +E +  K  F++ +SHELRTPL  I   + ++   T    + E+ +E +    +   
Sbjct: 250 ERLQELDEMKIDFISHVSHELRTPLTVIKEATGMLLDGTY-ADSRESQQELLTITQQECD 308

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L++ +N ILDLSR+EA   E       L  +++E ++ L   A  + I +  K+   L 
Sbjct: 309 RLIDSVNRILDLSRMEAKMMEYVFVPCQLSPLIQETVLKLAPIAIREEIRLQLKLQDHLP 368

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQYISIKDNGPGIAEGEI 417
            V  DE  ++QV+ NL+SNA+KF++ G  V V   V         IS+ D G GI +  +
Sbjct: 369 LVKMDEARIKQVLENLISNALKFSSKGDTVSVRTAVQRNGQDCIQISVADTGTGIQKENL 428

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F +     ++A +G GLGL IA+ I+  HGG     S    G      LP +
Sbjct: 429 ERIFDRFKRIERGKETA-RGTGLGLSIAKHIVTEHGGNIWAESAPGRGSTFFFTLPVS 485


>gi|229046907|ref|ZP_04192539.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
 gi|228724452|gb|EEL75777.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
          Length = 448

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + SK  EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 233 SLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +E RKRAE   E + AK+ F +++SHELRTPL  I G  E +  +T  PL   + + 
Sbjct: 333 RAYEEERKRAEALAELDRAKTVFFSNISHELRTPLTLIQGPLEEVLHQTESPLA-PSTRA 391

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +    R+   L  L+N  L+ SR+EAGR         L    +E   + +   ++  + 
Sbjct: 392 SLVMAQRNVLRLQKLVNTFLEFSRLEAGRIRAFYQPTDLGTFTQELASVFRSAIEQSGMR 451

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +     P    V+ D +   +++LNLLSNA KFT   G + V++ W +G      I+D G
Sbjct: 452 LVVHCPPLPQPVYVDHQMWEKIVLNLLSNAFKFTFE-GEIKVSLTW-AGDRVKFEIQDTG 509

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIAE EIP +   F +   A     +G G+GL + Q ++  HGG   + S   +G    
Sbjct: 510 IGIAEAEIPYLFDRFYRIQGAPSRTYEGSGIGLSLVQELVHLHGGTIEVNSIPAQGTCFR 569

Query: 470 AILP 473
             LP
Sbjct: 570 IYLP 573



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 117/299 (39%), Gaps = 20/299 (6%)

Query: 177  QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
            + +        +  G+ A  +     IT     + +     Q        EL        
Sbjct: 1101 RWVFDRGKPLFTPEGIFAGYIGSCVDITEQKEANLMLQERAQ--------ELTQLNEALT 1152

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
            +T +  ++ N    +F   +SH+L+ PL AI   S+ I+ +    L  E   + +  + +
Sbjct: 1153 QTAELLQKRNQELDQFAYVVSHDLKAPLRAIANLSQWIQEDLEDVLPQENQAQ-LELLRQ 1211

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
                + NLI+ +L+ SRI  GR E +   +++ +++ + I  L              +  
Sbjct: 1212 RVYRMNNLIDSLLEYSRI--GRTEETIEDVNVKNLLDDIIDSLSP-----PPSFTINVAS 1264

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
            S+ +V   +  + QV+ NL+SN +K      G++ ++V       Q+  + D+G GI   
Sbjct: 1265 SMPTVTTQKVLLSQVLTNLISNGIKHHGRLDGKLEISVQEQKNFYQFF-VSDDGQGIPAQ 1323

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   F              G+GL I + I+   GG  ++ S+  +G       P 
Sbjct: 1324 YQQKIFAIFQTVKTRETKES--TGIGLSIVKKIVEIQGGNIILASQEGQGSTFSFTWPK 1380


>gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
 gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
          Length = 390

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 13/245 (5%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A       R +AEE +  KS FL++MSHE+RTPLNAI+GFS +     + P +    ++Y
Sbjct: 157 ALRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFSRL----VIDPGHEGDKEDY 212

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I ++ + LL L N+ILDLS +E+G  E     ++L     E     +L+  +  + +
Sbjct: 213 CNIIEKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHACLEEYDSHRLKVNK-GVIL 271

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNG 409
                     V  D   + QV++NLLSNA KFT  G    +  G+   G      +KD G
Sbjct: 272 ILDDVDEELCVMGDRMRIMQVLMNLLSNAAKFTPTG---EIHFGYQLRGNIVQFYVKDTG 328

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI    +  +   F      I +  QG GLGL +++ ++   GG+  +RS    G    
Sbjct: 329 IGIPANRVAKIFERF----GKINNFAQGTGLGLTVSRMLVERMGGRIWVRSGEGIGTTFF 384

Query: 470 AILPN 474
             LP 
Sbjct: 385 FTLPL 389


>gi|158337336|ref|YP_001518511.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307577|gb|ABW29194.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 638

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +       L+ E  +E++   +R    L  
Sbjct: 387 ELNEAKSQFISNISHELRTPLFNIKSFIETLHD-YGDDLSAEDRQEFLDTANRETDRLTR 445

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+ +    A+ L+  V + +   QL A+++ IE+   I  +LS +W 
Sbjct: 446 LVNDVLDLSRLESGK-QYRFEAVDLLQPVEQTLRTYQLTARDQGIELSHDIQANLSPIWG 504

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVL 421
           +   + QV+ NL+ NA+KFT  GG+V +     +       + + D G GI   +   + 
Sbjct: 505 NYDLLLQVLTNLIGNALKFTLKGGKVMIRAYPLAEHTNQVRVEVADTGIGIEPDDQAAIF 564

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +         +G GLGL I ++I+  H     + S+   G      L
Sbjct: 565 DRFYRVEN-RVHTLEGTGLGLSIVRNILDKHHASVNLISESGVGTTFWFDL 614


>gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 484

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 150/311 (48%), Gaps = 13/311 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +      V++    +  +    I LA  +   L+  T ++  + K    +      K +
Sbjct: 164 LMKMTLFAVSIGAAVLAIVLAFSIGLANSIVKPLNNITTVSAQMAKGKFNVRIKGDYKYE 223

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L         ++ E  +     N  K  F++S+SHELRTPL +I G+SE ++     P  
Sbjct: 224 LGELSSTLNYMAQEIVR----SNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP-- 277

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  K  +  I +    L+ L+ E+LD S+++    +L +  ++L ++++E ++ L  +A
Sbjct: 278 -EETKIGMQIISKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKA 336

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           ++K ++I  + D     ++ D   ++QV LN++ NAVKF+   G ++++      +   +
Sbjct: 337 EKKGVQIKLESDEK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAM-EEKFVIV 394

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +++D+G GI++  +  V   F Q +        G GLGL I Q ++  HGG   + S+L 
Sbjct: 395 TVQDHGIGISDEHLRRVKDRFFQVNP----LNGGTGLGLAITQQLVELHGGTMEMESELG 450

Query: 464 EGVEVIAILPN 474
            G  VI  LP 
Sbjct: 451 HGTAVIVKLPL 461


>gi|328474775|gb|EGF45580.1| hypothetical protein VP10329_18770 [Vibrio parahaemolyticus 10329]
          Length = 566

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L F   +         K +   ++    +    ++     E RKRAEE   A   F
Sbjct: 149 VVGELIFSVSLEQIEQAFISKQMELVSDLVHGVISRHLSLEREVELRKRAEESEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG +E++    +G    E  ++Y+G++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSAELLSKTQLG----EDQRQYLGNLIQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  D+ +    +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI      ++   F Q   + 
Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-NGTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSA 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G      +P   
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPLKE 427


>gi|121603312|ref|YP_980641.1| integral membrane sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120592281|gb|ABM35720.1| integral membrane sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 755

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 156/362 (43%), Gaps = 14/362 (3%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
               G    +   V     T        +  LLIA++ + +    L          +V +
Sbjct: 248 SAISGWTIGVAAPVNNIEATAGRAVAIATLGLLIAITCAMMMAAFLGRR-------LVHS 300

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++     +  +   +   +  + +     +   L ++ V +   QA       E E    
Sbjct: 301 IAAATDAAAAMGHGTKPELTRSNVLELDQLHTALMQAGVILELAQASSAQAEEERECLLQ 360

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            + + R RAE E+ AK +FLA + HELR PL AI G   + E    G       +     
Sbjct: 361 DAYKARLRAEAESTAKDQFLAMLGHELRNPLAAIGGAIALSERHGHGSATAAEAR---AI 417

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I R   HL +LI+++LD+SR+  G+  L    + L    R C+  L+        E+   
Sbjct: 418 IQRQSGHLAHLIDDLLDVSRMVGGKITLKPQPVDLGKKARSCLESLRATRHMTGYELKVT 477

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +P    V AD   + Q++ NLL NA KFT  GG V VTV   + +   +S+KD+G GI+
Sbjct: 478 TEP--VWVNADPTRLEQMLNNLLVNAFKFTPPGGLVEVTVSACA-QEAVLSVKDSGMGIS 534

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
              +P V   F QGS ++  A+ G+G+GL + + + + HGG     S    +G   +  L
Sbjct: 535 PELLPHVFEMFVQGSASLDRAQGGLGIGLALVRQLASLHGGTVSADSAGPGQGSTFVVRL 594

Query: 473 PN 474
           P 
Sbjct: 595 PR 596


>gi|320354978|ref|YP_004196317.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123480|gb|ADW19026.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 942

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 150/383 (39%), Gaps = 32/383 (8%)

Query: 115 IAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
           I  GL                      ++   +  +      N  L     L    +++ 
Sbjct: 116 IPSGLALGAFRFHGRHAEILQPVTLEQEAIGAVFLMVSLEEINRNLLRLAGLMVVMLLLG 175

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L    + S  +L + +  +   +      I+     +    +    E   L        +
Sbjct: 176 LGMAMLFSRRLLQVIIEPISTLSQV-MGVISRDQDYTVRSPVRSTDELGLLSTGFNTMIA 234

Query: 234 LSDETRKRAEEENLAKSR------------------FLASMSHELRTPLNAILGFSEVIE 275
              +     EE+   ++R                  FLA+MSHE+RTP+NAI+G + +  
Sbjct: 235 QIQQRDLYLEEQVEQRTRDLLAAKEAAEAANQAKSLFLANMSHEIRTPMNAIIGMTRLAL 294

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                       ++ +  +  S   LL ++N+ILD S+IEAG+  LS+    L  ++   
Sbjct: 295 DNR----PEPGQRKLLQTVKDSADSLLGILNDILDFSKIEAGQLLLSKKPFVLGQLMETM 350

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I  L++ A EK + +   I P L +V   D+  +RQ+  NL+ NA+KFT  GG V V++ 
Sbjct: 351 ISALKVPAAEKGLTLEYSISPDLPAVIIGDDLRLRQIFFNLVGNAIKFTETGG-VTVSIE 409

Query: 395 WTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             S          +  ++D+G GI + +   +  +F Q   +      G GLGL I++ +
Sbjct: 410 PVSDGPPQQGCLLHCRVRDSGIGIPKEQQERIFNTFEQADGSSVRKYGGTGLGLTISRQL 469

Query: 449 MANHGGQFLIRSKLREGVEVIAI 471
               GG+  + S+   G      
Sbjct: 470 TEMMGGRMWVESEPGVGSTFHFT 492


>gi|300869527|ref|ZP_07114109.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332500|emb|CBN59307.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 816

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 42/349 (12%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           V  I    +    ++   +      +S    L   AE   +        +   + +   E
Sbjct: 333 VPIIVQEELWGLLIAHQCFEVREWEESKKTFLRQIAEHLAIAICQAELYAELQQQKHTLE 392

Query: 244 EENLA------------------KSRFLASMSHELRTPLNAILGFSEVIEL-----ETMG 280
           +  +                   KS FLA+MSHELRTPL  ++G S  +       E   
Sbjct: 393 QRVIERTQELQDALAAAQSASLAKSEFLATMSHELRTPLTCVIGISATLLRWCCGNEANT 452

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            +     K Y+  IH SG+ LL+LI +ILDLS++EAG   L  S  SL  +    +  L+
Sbjct: 453 KIPPSKQKNYLQTIHDSGKKLLDLIEDILDLSQVEAGNTALKISEFSLSQVAYLTVADLK 512

Query: 341 LRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---- 394
            +A  K+I I  +   +P       D++ ++Q++ NLL+NA+KFT  GGRV + V     
Sbjct: 513 EQAAAKHIAIAIEQQIEPGHERFVGDQRRIKQILFNLLTNAIKFTPKGGRVTLRVSVKGE 572

Query: 395 -----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                       + G      ++D G GIA+ +   +   F Q     +    G+GLGL 
Sbjct: 573 KSIAELRQNSIKSGGNIAVFQVEDTGIGIAKEQQSLLFQKFKQLDSPYRREYSGIGLGLA 632

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNHESTQ 490
           + + ++  HGG   ++S +  G    A +P   V  +  +     E T 
Sbjct: 633 LTKHLVELHGGAIEVKSTVGVGSIFTAFIPVQNVKKIERVANRKEEQTD 681


>gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 565

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E    + +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 311 EDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 366

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 367 DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQK 426

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFT+  G + +    T      
Sbjct: 427 NQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSE-GSITLGYRLTRQKDEL 485

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      +  +G GLGL I + I+   GG   + ++
Sbjct: 486 YFFVKDTGIGIPADQAGKVFERFVKL----NTFVKGTGLGLAICRVIIERLGGTIGVETR 541

Query: 462 LREGVEVIAILPNTRVL 478
             +G      LP    +
Sbjct: 542 EGKGSCFWFRLPVREDM 558


>gi|119492185|ref|ZP_01623595.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119453242|gb|EAW34408.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 598

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 3/270 (1%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +     +   ++     +     AE +  +    E +  A+    AK  FLA++SHELRT
Sbjct: 319 LQTQFDQQTAQLQKTCQKLRSQTAEFQKLEYALKEAQNTAQVALGAKRTFLANISHELRT 378

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P++AI+G+S+++  E +         E +  I + G  LL++I+ ILDL RIE G+  L+
Sbjct: 379 PIHAIIGYSDLLCEEVLEQGQL-NCLEDVQIIRKEGYRLLHVIDSILDLVRIETGQMSLN 437

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
                 +++++  +  L   A +   ++       L  +  D   +++++ +LL NA+KF
Sbjct: 438 LDIFDPVNVIKGVVKSLVSIADKNRNQLKIHYGRDLGLMHTDLGKLQKILHHLLENALKF 497

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G++ +T+    G      + D G GI+      +  +F Q   ++     G GLGL
Sbjct: 498 T-EDGQIQLTIRRQ-GDWIEFCLIDTGIGISTEHQHCLFEAFTQADDSLCRRHGGTGLGL 555

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I + +    GG   + S+L +G      L
Sbjct: 556 TICRHLCKMMGGDITVSSELGQGSMFTVRL 585


>gi|52142294|ref|YP_084535.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51975763|gb|AAU17313.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 458

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|228967769|ref|ZP_04128785.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791923|gb|EEM39509.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 484

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VT+  +     
Sbjct: 347 LSEEGIEINLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTIS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVIDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|229075210|ref|ZP_04208204.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
 gi|228707987|gb|EEL60166.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
          Length = 448

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 TVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 736

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           K   +   ++A   N  KS FLA+MSHE+RTP+  ++G +++     +         E +
Sbjct: 345 KLRLENAVRQARRSNRVKSEFLANMSHEIRTPIAGVIGTAKM----ALASERRGNQAEQL 400

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  + + LL+++N+ILD+S+IEA   E      S   +V  C+      AQ K +++ 
Sbjct: 401 RRIENAARSLLSIVNDILDMSKIEAKGLEFRAKDFSPEWVVCACVEEFTALAQAKGLDLA 460

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKD 407
             ++P +   +  D   + QV+ NL+ N++KFT   G + ++V           Y S+KD
Sbjct: 461 AYVEPDVPACMRGDPDRLLQVLRNLVGNSLKFTER-GHITISVRQPEKGETGLLYFSVKD 519

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI +     +   F Q         QG GLGL I++ ++   GG   + S+  +G E
Sbjct: 520 TGIGIPKNRQKDLFKPFSQLDTTYAKRHQGTGLGLSISRRLVERMGGDIWVESERGQGSE 579

Query: 468 VIAI 471
               
Sbjct: 580 FCFT 583


>gi|229120300|ref|ZP_04249550.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
 gi|228663110|gb|EEL18700.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
          Length = 463

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLA ++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLAIVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|254420261|ref|ZP_05033985.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186438|gb|EDX81414.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 848

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +  +   +    L+     A+      R+RAEE + +KS FLA+MSHE+RTPLN ++  
Sbjct: 430 TIAAIFILSALAALLWMGSQARD-LRIARRRAEEASRSKSEFLANMSHEIRTPLNGVVAM 488

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           ++ +    +        +E +  I  S   L  L+++ILD S+IEAG+  L  S   L D
Sbjct: 489 ADALSRAGL----EPREREMVEVIRSSAVTLERLLSDILDTSKIEAGQIVLERSVFDLGD 544

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            VR    + + RA EK + +  +++P++  +V  D   +RQV+ NL+SNA+KFT   G V
Sbjct: 545 TVRGAAALYRPRADEKGVALRVEVEPTIEGAVEGDVVRVRQVLSNLISNALKFTET-GSV 603

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            VT           ++ D G G   G+   +   F Q   +I     G GLGL I++ ++
Sbjct: 604 VVTAVAVDEDRVRFTVSDTGCGFDAGQKGRIFNRFQQADGSITRRFGGTGLGLAISRDLV 663

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           A  GG      +  EG +    +P TRV    P    
Sbjct: 664 ALMGGVLDCDGRPDEGADFWFEIPLTRVGGVQPPSAP 700


>gi|114765347|ref|ZP_01444464.1| phosphate regulon sensor histidine kinase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542327|gb|EAU45356.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. HTCC2601]
          Length = 346

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 8/240 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A+LGF E +        +      ++G +      +
Sbjct: 108 LEQAGQMRRDFVANVSHELRTPLTALLGFIETLR--GPAREDAAARDRFLGIMEDEAGRM 165

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LSR+EA         + L  +VR  I  L   A++  + +      ++  V
Sbjct: 166 ERLVGDLLSLSRVEAEERVRPTEPVDLAGLVRSAIRGLAPLAEDAGVTLETDAPEAVLEV 225

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEG 415
             D   +RQV++NL+ N VK++  G  V V +          G+G  +++ D GPGI   
Sbjct: 226 PGDADQLRQVVVNLIENGVKYSGRGAEVRVHLAEPAYQPRLRGQGVELAVTDTGPGINPI 285

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            IP +   F +          G GLGL I + I+  H G+  I S   +G     +LP  
Sbjct: 286 HIPRLTERFYRVDSHRAREMGGTGLGLAIVKHIINRHRGRLKIESAPGKGTTFRVLLPRE 345


>gi|253565117|ref|ZP_04842573.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251946582|gb|EES86959.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 756

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E RK AE+  L K  FLA++SHE+RTPLNAI+GFS ++       +  
Sbjct: 508 IEDYKKREQELIEARKMAEKAEL-KESFLANISHEIRTPLNAIVGFSTLLASPDDTDITP 566

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++YI  I+R+ + LL LIN+IL+LSRIE+G          L  ++R+     ++   
Sbjct: 567 EEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALIRDTYQTHKILIP 626

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + ++ +  L  V  D+  + QVI N L+NA KFT   G + +   +        I
Sbjct: 627 GQLHFLLEEGEKGLI-VHVDKNRLVQVITNFLNNASKFTRE-GSIKLGWSYMPQTEEVEI 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + E   +   F +         QG GLGL I + I+    G+  +RS+  
Sbjct: 685 YVEDTGIGIPQSEQKMIFGRFYK----QNEFAQGTGLGLSICKLIIEKLQGRLSLRSEAG 740

Query: 464 EGVEVIAIL 472
            G       
Sbjct: 741 TGSRFSIFF 749


>gi|255035539|ref|YP_003086160.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948295|gb|ACT92995.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1344

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 144/316 (45%), Gaps = 7/316 (2%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            +      +IS+        + + Y+ Y L    +       +++ +I   ++A    +  
Sbjct: 779  LWGKDFKEISIVIRPPFWATMWAYLIYALVLVVIVWRYLVFKEERMITRQKLAFEKREAL 838

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            R +  E +  K RF ++++HE RTPL  I+   + +  E  G ++    ++ +  I ++ 
Sbjct: 839  RLK--EMDELKDRFFSNITHEFRTPLTLIISPLQKLLSE--GAVSGP-IRQTLRGIEKNS 893

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            + LL L+NE LD S++  G+ +++ SA  L   V   +   +  A EK I +        
Sbjct: 894  RQLLGLVNEFLDFSKLNDGQMQVNRSAGELAPFVSAHVRSFEAAASEKQITLSFASGDVE 953

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
                 D++   ++++NLL NA+KFT   G + V +   SG    + + DNGPGIA  +  
Sbjct: 954  GFYLFDQEKWSKIVINLLGNALKFTPEKGAISVGLRQASGDCIVLEVWDNGPGIATDQQE 1013

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   F Q   +   ++ G G+GL + + ++   GG   + S+  +       LP  + L
Sbjct: 1014 RIFERFYQVDGSAIRSQGGTGIGLALVKEMVGVMGGHIQVDSEPGKYARFCVELPVPKAL 1073

Query: 479  NFIPEDNHESTQYKCY 494
            +  PE+   ++    +
Sbjct: 1074 S--PENTTLNSDTPLF 1087


>gi|60682633|ref|YP_212777.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60494067|emb|CAH08859.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 756

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E RK AE+  L K  FLA++SHE+RTPLNAI+GFS ++       +  
Sbjct: 508 IEDYKKREQELIEARKMAEKAEL-KESFLANISHEIRTPLNAIVGFSTLLASPDDTDITP 566

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++YI  I+R+ + LL LIN+IL+LSRIE+G          L  ++R+     ++   
Sbjct: 567 EEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALIRDTYQTHKILIP 626

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + ++ +  L  V  D+  + QVI N L+NA KFT   G + +   +        I
Sbjct: 627 GQLHFLLEEGEKGLI-VHVDKNRLVQVITNFLNNASKFTRE-GSIKLGWSYMPQTEEVEI 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + E   +   F +         QG GLGL I + I+    G+  +RS+  
Sbjct: 685 YVEDTGIGIPQSEQKMIFGRFYK----QNEFAQGTGLGLSICKLIIEKLQGRLSLRSEAG 740

Query: 464 EGVEVIAIL 472
            G       
Sbjct: 741 TGSRFSIFF 749


>gi|322641155|gb|EFY37797.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|323229436|gb|EGA13559.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
          Length = 862

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 211 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 264

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 265 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 324

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 325 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 380

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 381 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 440

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 441 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 498

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 499 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 554

Query: 475 TRVLNFI 481
                  
Sbjct: 555 QEYQPPQ 561


>gi|317489324|ref|ZP_07947838.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316911569|gb|EFV33164.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 671

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 48/347 (13%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           N  +  A   SF  +  A+      +M    + +  ++   + F   I     +      
Sbjct: 183 NQAIISAAARSFDQLYKAVGKTRQDTMFTASVLMTAVMVALVLFLAVIKRKNRQ------ 236

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                           +       ++A++ + AKSRFL+++SH++RTPL AI+G  ++  
Sbjct: 237 ------------ERELQESLRCAMEKAQDASEAKSRFLSNVSHDIRTPLTAIMGLVDIAV 284

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                    +  KE    +  S  HLLNL+N++LD+S+IE+G+  L      L  +V   
Sbjct: 285 EHI---DERDRVKECFDKVQLSSHHLLNLVNDVLDMSKIESGQINLCCKPFDLHVVVETL 341

Query: 336 IIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +++ +A  K++     ++D     V  DE  + QV++NLL NAVK+T   G V + V 
Sbjct: 342 GSIVRPQADSKHLTFSVLRVDVEEGLVLGDEMHVNQVLINLLGNAVKYTEPSGTVSLAVE 401

Query: 395 WTSGRGQY--------------------------ISIKDNGPGIAEGEIPTVLTSFGQGS 428
              G  +                             ++D+G G+++  +  +   F +  
Sbjct: 402 ELRGDERVEYAAQHGLSLEPTSHDGFDMCIRLIRFIVEDDGIGMSKEFMSRLFDPFEREE 461

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  + + +G GLGL I +++    GG   ++S+   G     +LP  
Sbjct: 462 VPTRLSVEGTGLGLSIVKNLADLMGGTVQVQSERGRGSRFTLVLPFE 508


>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1444

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 856  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 912

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + +  +      ++   +Y+  + ++ + +
Sbjct: 913  ---LSELKIKFFTNISHELRTPLTLIQGPIQELREK---EKLSQKGMQYVDLMEKNTKQM 966

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 967  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1026

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1027 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEI 1086

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1087 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1138


>gi|166030504|ref|ZP_02233333.1| hypothetical protein DORFOR_00165 [Dorea formicigenerans ATCC
           27755]
 gi|166029666|gb|EDR48423.1| hypothetical protein DORFOR_00165 [Dorea formicigenerans ATCC
           27755]
          Length = 640

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 8/255 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              +  + L  E  + A+  N AKS FL +MSH++RTP+NAI+G++E+ E     P   E
Sbjct: 243 ENEQKQQKLLQEAARLADSANKAKSTFLFNMSHDIRTPMNAIIGYAELGEKHLKEPTILE 302

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              +Y   I   G+ +L+LI+ IL+L+RIE  +  L E+   +      CI M +   +E
Sbjct: 303 ---DYFEKILLCGKKMLHLIDNILELARIENNQETLDETITDVSKNFDLCIDMFRKPIEE 359

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQY 402
           K+  +    +     ++ D+    ++ +N+LSNAVK+T  GG +  T+            
Sbjct: 360 KHQTLKVNKNIRYPYLYMDDARSSEITINILSNAVKYTGEGGNISCTLNQYPGEKEGWSV 419

Query: 403 ISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           + I   DNG G++E     +  SF Q   +  S  +G GLG+ I + ++    G+  ++S
Sbjct: 420 LEIIIVDNGIGMSEEFQKHIFESFSQERSSSDSGIEGSGLGMGIVKKLVDLMNGKITVQS 479

Query: 461 KLREGVEVIAILPNT 475
           K   G      LP  
Sbjct: 480 KPGAGSTFTITLPLK 494


>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1467

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 879  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 935

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + +  +      ++   +Y+  + ++ + +
Sbjct: 936  ---LSELKIKFFTNISHELRTPLTLIQGPIQELREK---EKLSQKGMQYVDLMEKNTKQM 989

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 990  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1049

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1050 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEI 1109

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1110 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|118589406|ref|ZP_01546812.1| two component sensor kinase [Stappia aggregata IAM 12614]
 gi|118438106|gb|EAV44741.1| two component sensor kinase [Stappia aggregata IAM 12614]
          Length = 1129

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 164/331 (49%), Gaps = 7/331 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +S+ + +   L   +  +     +   T  I    +L   +  ++     +F  + +   
Sbjct: 580 ISVLSNAAIGLVLWIIYAQAENRLGDPTGIIGQTVLLIFFVFAIVVGIACWFLVLAHDTR 639

Query: 209 K-SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
           + +  + +   A     I    V  +   + ++ AE  NLAKSR++  +SHELRTPLNA+
Sbjct: 640 RVAEEESMRQNALLQKEIDAHSVTDAALQKAKENAEAANLAKSRYVVGLSHELRTPLNAV 699

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G+++V+E +   P      K  I  I RS +HL  LI+ +LD+SRIEAGR ++  + I+
Sbjct: 700 MGYAQVLERDDSVP---AARKPAISTIRRSAEHLSGLIDGLLDISRIEAGRLQIYSNEIN 756

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386
           + + + + + M +++A  K +       P+L   V  DEK +RQ+++NLLSNA+KFT   
Sbjct: 757 IHEFLDQIVDMFRMQAAAKGLGFSYDRAPNLPVFVRTDEKRLRQILVNLLSNAIKFTTR- 815

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V + V +   +     + D+GPGIA  E   +   FG+   A  +   G+GLGL I +
Sbjct: 816 GTVSLAVSYR-SQVAGFVVSDSGPGIALDEQVKIFEPFGRSKAADGAKTPGLGLGLTITK 874

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +    GG   + S+  EG      L    V
Sbjct: 875 LLTETMGGAIALSSEPGEGASFEVRLMLAAV 905


>gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 776

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 20/333 (6%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           LP  V      +        ++    L      +              +      I   +
Sbjct: 332 LPGLVQAFGAVLADPEGLPPVLEARALHKDGHWVWLQGRPVLNRTAGRIEGVIQDITEYK 391

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +D+L AE   A+   +           A+S FLA+MSHELRTPL A++GF+ ++E   
Sbjct: 392 RARDELAAEQARAEQALE-----------ARSAFLANMSHELRTPLTAVIGFAALVEGLD 440

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P   ET ++Y+G I  +G+ LL++IN++L++S++E G+ +   +  +L  ++ + + M
Sbjct: 441 DLP---ETARDYVGRISTAGKALLSVINDVLEMSKLETGQVQAHLAPCALAPLIDDTVRM 497

Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             L A EKN++I  ++      V   D   +RQV++NL+ NA+++T   G + + V W  
Sbjct: 498 FGLHAAEKNLQIAVRMVDPPPRVLMIDPDRVRQVLINLIGNAIRYTDA-GSITLEVIWRG 556

Query: 398 G-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                ++++KD G GI   +   +   F Q   A   +  G GLGL I++ ++   GG+ 
Sbjct: 557 ELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARSRGGSGLGLVISKGLVEAMGGRI 616

Query: 457 LIRSKLREGVEVIAILPNT---RVLNFIPEDNH 486
              SK  EG      +P +   R  +  PE   
Sbjct: 617 GASSKPGEGSTFWFAIPASGPLRDEDAGPEPEP 649


>gi|320586359|gb|EFW99038.1| sensor histidine kinase response [Grosmannia clavigera kw1407]
          Length = 2553

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 200  FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR----AEEENLAKSRFLAS 255
               +     +  ++  +   E ++   +       ++   KR    AEE   AKS FLA+
Sbjct: 1939 MVVLQKTALRKAIEAENKAKEAENKAKQNLQLAEAAEAEAKRNVKVAEEATKAKSIFLAN 1998

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            +SHELRTPLN ++G SE++   ++        +E    I  S   LL +IN+ILD SR+E
Sbjct: 1999 VSHELRTPLNGVIGNSELLRDSSLTA----EQQEMAEAIRLSADLLLIVINDILDFSRME 2054

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-----PSLSSVWADEKGMRQ 370
            A + +L  +A +  +++ E +     R QEK  E    I+     P    V+ D   + Q
Sbjct: 2055 ADKMKLYITAFNPRELMPEVVRAASYRNQEKTREGAVAIEKQIRLPPSLFVYGDPVRLHQ 2114

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQ 426
            V+ NL+ N++KFT   G + V     S     ++    ++D G GI   ++  +   F Q
Sbjct: 2115 VLGNLIGNSIKFTER-GTITVGARVESETAATVTLTFWVEDTGIGIQPDQLANLFQPFSQ 2173

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVE--VIAIL 472
               +      G GLGL I +S++     G+  + S    G +       
Sbjct: 2174 ADPSTARKYGGSGLGLSICKSLIELIMKGRIYLESTQHVGTKVWFTVTF 2222


>gi|314933845|ref|ZP_07841210.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
 gi|313653995|gb|EFS17752.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
          Length = 565

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + ++   ++  I +    +
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE  + E+  + ++L ++    I  LQ +A  KNIEI  +I+  +  +
Sbjct: 395 ESLVMDLLDLSHIEQ-QTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-I 452

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A E  + QVI NLLSNA+ ++    +V V V    G+   + I+D G GI+  +   + 
Sbjct: 453 EAHENKIAQVITNLLSNAINYSLEDNKVIVRVFR-EGKKVNLEIQDFGIGISVKDQKHIF 511

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+  H G+  I S+L EG       
Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|157374892|ref|YP_001473492.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
 gi|157317266|gb|ABV36364.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
          Length = 583

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 7/301 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                AL           ++  K L    +      + +   + + E ++RAE       
Sbjct: 160 ARHIGALQIELNTPKTWQETIEKQLLLFCDMLHSAYQRQALLNRTLEEKRRAEYSERTAR 219

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A ++HELRTPL+ +LG ++++    M        ++ +  +H+SG+ L  +IN++LD
Sbjct: 220 DFVAMINHELRTPLSGLLGSADLMRDTQMTAH----QQQLLKTMHQSGELLEVIINDLLD 275

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           +S++ AG  ++ ++  S   +      +   +  E  +      D  +   +  D   ++
Sbjct: 276 ISKMNAGMLKIIDTKFSPEQLCSMIQNIFTTKTAELGLAFELTFDEHIPARLLGDPDRIK 335

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+ +NL+ NA+KFT   G++ V V W      + +I D+G GI + ++  +   F Q + 
Sbjct: 336 QLFVNLIGNAIKFTDQ-GKISVKVDWVQE-MFHFTISDSGCGIPKDKLAHIFEPFVQVNN 393

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           A     +G GLGL I + ++    G+  + S   EG +    LP     +       E  
Sbjct: 394 ASNRPHEGTGLGLAICKLLVDEMKGEISLESSEDEGTQFSVRLPLKATDDTEDVTVDEEM 453

Query: 490 Q 490
            
Sbjct: 454 D 454


>gi|307151156|ref|YP_003886540.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981384|gb|ADN13265.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 707

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L +    +L    E ++    +    +  D+  +  +  +  KSRFL++MSHE
Sbjct: 168 LLQTLAQLRQREEDLLQLNQELEETNRGVVALYAELDQKAESLKRVSELKSRFLSNMSHE 227

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            RTPLN+IL  S  +     G LN+E  K+ +  I  + Q L  ++N++LDL+++EAG+ 
Sbjct: 228 FRTPLNSILSLSNFLLKRMDGELNSEQEKQ-VTFIRNAAQQLSEMVNDLLDLAKVEAGKT 286

Query: 320 ELSESAISLIDIVRECIIMLQLR-AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
           ++      + D+      M +       ++ +  +    + SV++DE  + Q++ N +SN
Sbjct: 287 DIYADKFEIGDLFGTLRGMFRPLLINNSSVSLIFEDPDHIPSVYSDEGKIAQILKNFISN 346

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+K+T   G + V      G     S+ D G GIA   + ++   F Q    ++   +G 
Sbjct: 347 ALKYTEK-GTITVAAVPI-GNHVTFSVADTGIGIAPENLESIFDEFVQLKSPLQKRVKGT 404

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLNFIPE 483
           GLGLPI++ +    GG   + S+L +G      LP         L  +P+
Sbjct: 405 GLGLPISRKLAQLLGGDVSVISELGKGSTFFLNLPIDYRTDEPKLKELPQ 454



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%)

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  +   +  +  NA ++    G+V  ++     +   I I D+G GI+   +  +   
Sbjct: 36  DQTRIATAVSEICRNAFQYAGS-GKVEFSLDGKQPQCFLIQICDSGKGIS--NLDRI--- 89

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLN 479
                    S     G+GL  ++ +M     +F I+S  ++G +V+    LP  RV  
Sbjct: 90  ---LDGDYNST---SGMGLMSSRRLMD----RFDIKSIPQQGTKVLLGKNLP-KRVPP 136


>gi|289626570|ref|ZP_06459524.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650162|ref|ZP_06481505.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867641|gb|EGH02350.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1189

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 675 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 734

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 735 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 790

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT +G  ++ +    +     
Sbjct: 791 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 850

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 851 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 910

Query: 459 RSKLREGVEVIAIL 472
            S   +G  +   L
Sbjct: 911 DSVPGQGTRISMNL 924


>gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1426

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 8/259 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +E R+RAE     + AK+ F +++SHE RTPL  +L   E +  +   P +    +  +G
Sbjct: 344 EEERRRAEALAEIDRAKTAFFSNVSHEFRTPLTLMLSPLEDVLNQATLPND---QQALLG 400

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             HR+G  LL L+N +LD +RIEAGR     + + L     E     +    +  + +  
Sbjct: 401 IAHRNGLRLLKLVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSAIDKAGLRLTI 460

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPG 411
              P    V  D     +V+LNLLSNA KFT   G + VT+  T       I ++D G G
Sbjct: 461 DAPPLPQPVHVDRDMWEKVVLNLLSNAFKFTFE-GEIAVTLRPTPDGRSAEIVVRDTGTG 519

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   EIP +   F +   A   + +G G+GL + Q ++  H G   + S+L  G      
Sbjct: 520 IPPDEIPHLFERFRRIDGARGRSIEGSGIGLALVQELVKLHSGSIGVESELGRGSAFRVT 579

Query: 472 LPNTRVLNFIPEDNHESTQ 490
           LP            H++ Q
Sbjct: 580 LPFGAAHLPADRPRHDALQ 598



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 129/393 (32%), Gaps = 39/393 (9%)

Query: 126  LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
            L      +  Y  +      +I  ++++LS         +                   +
Sbjct: 926  LRTIFAASYTYQALLDVDGAVIDANLTSLSGIGARLEDVVGQPLWDTPWFAGTPGMQQTI 985

Query: 186  DISLAGMLATALSF----FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
               +A + A                    + ++      +  +IA +  A  +++  R++
Sbjct: 986  RDDVAAVAAGQSVRREMQLDLPVGGWRWFDFQMRPVHDAQGQIIAIVPEAVEITE--RRK 1043

Query: 242  AEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            AEE         A  +    ++H+    L  I   ++++    + P   E  + Y+  I 
Sbjct: 1044 AEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRELPP---ERMRRYVDAIS 1100

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
             +      L  ++L  +R    R+  +         + +   ML+  A         KID
Sbjct: 1101 DTADRAAKLTGQLLTFAR----RHAQNRQVFDAAGQIEQTAEMLRT-ALGSRASFALKID 1155

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------RGQYISI 405
                +V AD       ++NL++NA       G + + V   +               +SI
Sbjct: 1156 QRPLAVEADANQFDAAMVNLVANARDAMDGQGALEIRVAAAAPTAQETAAGVMDVVAVSI 1215

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D G GI + +I  +   F       K   +G GLGL      +   GG   + S L  G
Sbjct: 1216 ADTGAGIPQDQIDRIFEPFF----TTKDVGRGTGLGLSQVYGFVKQSGGNVTVESALGCG 1271

Query: 466  VEVIAILPNT----RVLNFIPE-DNHESTQYKC 493
              +   LP +     V + +P  D     + +C
Sbjct: 1272 TTITLRLPLSSKPIEVRDRVPNGDTTRPAERRC 1304


>gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 813

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 146/334 (43%), Gaps = 6/334 (1%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   L     L         +      +   D+    +   A    T I    +    +
Sbjct: 220 FAAARLFLQDALPGSVYYGPEANLRFADLAGFDLEAVKLRGEAGDVLTCIGERWYSITAQ 279

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +   + K   I       + +   R++AE    AK+ FLA+MSHE+RTP+++I G +E+
Sbjct: 280 EMLDVSRKFVGIVVTFHDVTEARRAREQAEALARAKTDFLATMSHEIRTPIHSIGGVTEL 339

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   +   +    + Y+  I RS + L ++++++LD +RIE+G  EL +   S+  I+ 
Sbjct: 340 LKQSELASRD----RGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILD 395

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   M+Q   + K           L  V  D   +RQ+++NL SNAVKFT   G V +  
Sbjct: 396 DVARMMQPLVRRKPQLRIVIERTDLPPVLGDAGKLRQILINLTSNAVKFTPE-GTVVIGA 454

Query: 394 GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              +G  ++  ++ D GPGIA  ++  +   + Q   +I     G GLGL I + +  + 
Sbjct: 455 ERLAGGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHL 514

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           GG+  +RS    G      +      +  P D  
Sbjct: 515 GGRLDVRSTPGFGSRFTLEVALAPGGSEPPGDAT 548


>gi|319643445|ref|ZP_07998068.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317384850|gb|EFV65806.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 632

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 374 LIAIYYIIRINHLKHNLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 433

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +    ++Y   I ++   LL+LIN+ILD+SR+E+GR +       ++++
Sbjct: 434 ---SVLVSDDSSPAEKEQYCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEECDVVEL 490

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +  ++   +   + +F+   PSL  V  D + ++QV++NLLSNA KFT   G + +
Sbjct: 491 CQTALSTVEYGRKTSALFLFETPVPSLV-VKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 548

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           TV       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 549 TVAIDKQHQQLELSVSDTGCGIPPDKSEKVFERFEKL----NEYSQGTGLGLAISRLIIE 604

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 605 NLGGKIWVDKDYTEGARFVFTHPLTK 630


>gi|261251802|ref|ZP_05944376.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
 gi|260938675|gb|EEX94663.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
          Length = 776

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             ++  ++    AE+   ++ RFLA+MSHELRTP+ +++G  E++  E     ++   K 
Sbjct: 194 QQRTALEKAHSLAEQAVQSRERFLATMSHELRTPIASMIGLLELLSFENGNIADDYKLKS 253

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +     S ++L  L+N+ILD S++++    L E  +S  D++ + + + +  A+E+ + 
Sbjct: 254 LM----SSARNLQLLVNDILDYSKLDSQGISLVEELVSYTDLLGDLVRLHEASARERGLV 309

Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
              + D   +  +  D   + Q++ N+LSNAVKFT   G++ VTV   + +   I + D 
Sbjct: 310 FETQWDNSDVEYILTDALRLSQIVNNVLSNAVKFTEQ-GKIKVTV-RVATQSIQIIVDDT 367

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++ ++   F Q   +I+    G GLGL I + +     G   I S   +G  V
Sbjct: 368 GIGICPDKLESIFDPFRQADDSIERKYGGTGLGLAIIKKLTTLMSGYISINSAEGKGTSV 427

Query: 469 IAILPNT 475
           +  LP  
Sbjct: 428 MISLPLK 434


>gi|253680781|ref|ZP_04861584.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562630|gb|EES92076.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 781

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 9/250 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
              ++   + +  + R E        F A++SHEL+TPLN IL   + IEL      N +
Sbjct: 511 ENTKLLNEMLEYQKLRVE--------FFANISHELKTPLNLILSAVQYIELVHNKNFNLD 562

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
            + +Y   I ++   L+ ++N ++D+++I++G +++     +++++V +  +        
Sbjct: 563 DFCKYTNIIKQNSYRLVRIVNNLIDITKIDSGYFQIHAENYNIVELVEDICLYCASYINS 622

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           KN+E+    +     +  D   M ++ILNLLSNA+KFT  GGR+ V + +       IS+
Sbjct: 623 KNLELIFDTETEEKIISCDALIMERIILNLLSNAIKFTPSGGRITVNI-YDKDNEIQISV 681

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI E     +   F Q   ++    +G G+GL + ++ +  H G   ++SK+  G
Sbjct: 682 KDTGIGIPENRQELIFERFIQVDKSLSRNHEGSGVGLSLVKAFVNLHNGNIKVKSKVGYG 741

Query: 466 VEVIAILPNT 475
            E +  LP  
Sbjct: 742 SEFLITLPVA 751


>gi|229110656|ref|ZP_04240220.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
 gi|228672724|gb|EEL28004.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
          Length = 448

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|229128512|ref|ZP_04257490.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
 gi|228654705|gb|EEL10565.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
          Length = 448

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|146280700|ref|YP_001170853.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|145568905|gb|ABP78011.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|327478968|gb|AEA82278.1| two-component system sensor protein [Pseudomonas stutzeri DSM 4166]
          Length = 289

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 135/269 (50%), Gaps = 9/269 (3%)

Query: 214 ILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   + E + L AELE          +  D   ++  + +  KSRFL+ MSHE RTPL +
Sbjct: 14  LEQLRRENESLRAELEETNQGVLALYAELDTQAEQLRQASELKSRFLSYMSHEFRTPLGS 73

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           IL  + ++  E  GPL+ E +K+ +  +  +   L  +++++LDL++IEAGR  +S +  
Sbjct: 74  ILSITRLLSDELDGPLSPEQHKQ-VRFVSSAASELSEMVDDLLDLAKIEAGRVSISPAWF 132

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            ++D+      M +   +   +++  +    L   + D+K + Q++ N +SNA+KFT   
Sbjct: 133 DMLDLFSALRGMFRPIVEGSPVDLIFEEPQGLPRFYTDDKKLAQILRNFISNALKFTTQ- 191

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V V+    + +    ++ D G GIA      +   F Q    ++   +G GLGL + +
Sbjct: 192 GEVRVSARMETPQQVRFAVTDTGIGIAPQLHDRLFEDFAQVDSPLQKRLRGTGLGLALCK 251

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475
                 GG+  ++S+  +G E   I+P +
Sbjct: 252 RFAELLGGRVGLQSEPGKGSEFYVIIPFS 280


>gi|30021337|ref|NP_832968.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29896891|gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 458

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|15614508|ref|NP_242811.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174563|dbj|BAB05664.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 462

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 132/272 (48%), Gaps = 12/272 (4%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I       +++I S ++ KD++    E   +LS       E     +  FLA +SHEL
Sbjct: 200 AAIQMAKGDFSLRISSTRSRKDEIGQLAESFNTLSS----SLERVEEKRREFLADVSHEL 255

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL+ + G++E +E   + P       + +  I +    L  L+N++LDL+++E   Y 
Sbjct: 256 RTPLSYMKGYAEGVEEGVIDPS------KGLSIIQKEANRLERLVNDLLDLAQLEGESYV 309

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           + +  I+   +V E +   +  A +K +++   +D  +  +  D   + QVI NLL NA+
Sbjct: 310 MKDEPIAFAQLVYEVVEQFRYLAAQKRLQVHLDLDEDVI-ISGDPDRIEQVIRNLLDNAI 368

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K+      + +T+G    R Q+I + D G GI E ++  V   F + + +    + G GL
Sbjct: 369 KYAHEETTISLTIGREGSRAQFI-LSDQGIGIPEDKLALVFERFYRVNKSRSRKKGGTGL 427

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL IA  I+  HGG   I S+  +G  V   L
Sbjct: 428 GLAIASQIIKKHGGTIDITSQELKGTTVTITL 459


>gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1068

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 24/296 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 307 LRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEARKQALLIAQNQLVRN 366

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 367 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVK-YAQAILSSN 425

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  +    +++      +  A++K + +        
Sbjct: 426 NDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLARQKGLALEITAAAGA 485

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D + ++Q++ NLL+NA+KFT   G+V +TV   +      ++ D G GIA  + 
Sbjct: 486 PAQLVVDNQRLQQILKNLLANAIKFT-EHGKVGLTVQAHAPGRVRFAVTDTGIGIAREQS 544

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP
Sbjct: 545 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELP 600


>gi|262199366|ref|YP_003270575.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
 gi|262082713|gb|ACY18682.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
          Length = 1885

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 212  VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            ++I+   A +  +  E     +    +++ AE  N AKS FLAS++HELRTP+N I+G  
Sbjct: 1457 LEIVQMLAAQAAISIENARLLTHLKLSKEEAERANRAKSDFLASINHELRTPMNGIIGMI 1516

Query: 272  EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            E++         ++  +EY+G    +   L+ +I + LD+SRIEAG+ EL      L D 
Sbjct: 1517 ELL----FDTEPSDEQREYLGMARTAADQLMRIIRDTLDVSRIEAGKLELEPIEFELDDC 1572

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +     ML  + Q +   +   + P +   +  D   + QV++NL  NA++FT   G V 
Sbjct: 1573 MATLASMLPAQTQSEGPALSFDVAPEVPRKLRGDRDRLLQVLINLFGNAIRFTPAEGLVA 1632

Query: 391  VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            + V   S          +++D+G GIA  +   +   F Q   A    + GVGLGL I  
Sbjct: 1633 LHVDLASRSAGAVVLRFAVRDSGEGIAPEDQEAIFQPFTQARSANS--KGGVGLGLAIVS 1690

Query: 447  SIMANHGGQFLIRSKLREGVEVIAI 471
            S++   GG   + S+L EG      
Sbjct: 1691 SLVELMGGDISVESELGEGACFTFT 1715


>gi|83592613|ref|YP_426365.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83575527|gb|ABC22078.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 811

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
               RAEE N AKS FLA+MSHE+RTP+N ILG S ++  E    L +E  + +   I  
Sbjct: 286 RASDRAEEANQAKSTFLATMSHEIRTPINGILGLSTLMRDE----LRDERLRHHADAIAL 341

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL+++N++LD ++IEAG  +L     S+ +++     ++   A  K +E+++ + P
Sbjct: 342 SAEMLLSMVNDVLDFTKIEAGILDLDPVDFSVEELLNGVFALVAPSAHRKGLEVYRSVSP 401

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV-TVGWTSGRGQ--YISIKDNGPG 411
           ++   +  D   +RQV+LNL SNAVKFT  G   +H+  +          +I++ D G G
Sbjct: 402 AVPERLHGDLAKLRQVLLNLFSNAVKFTHAGALSIHIDRLAEAPEGKVILHITVDDTGIG 461

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA   +  +   F Q   +I     G G+GL I + +    GG+    S+  EG      
Sbjct: 462 IAPSALKAIFEPFAQADGSISRRFGGTGMGLAINRRLAEVMGGEVWAESREGEGSRFHVT 521

Query: 472 --LPNTRVLNFIPEDNH 486
             L   R+    P+  +
Sbjct: 522 ALLEAARLPPPPPDTAN 538


>gi|15924481|ref|NP_372015.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927072|ref|NP_374605.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979810|ref|YP_001442069.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|13701290|dbj|BAB42584.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247262|dbj|BAB57653.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721945|dbj|BAF78362.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|285817172|gb|ADC37659.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 04-02981]
          Length = 588

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAVVLDESKRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 478 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 537 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 972

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 130/276 (47%), Gaps = 9/276 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +L+           L  A    ++   +AE    AKS FLA+MSHE+RTP+NAI+G +
Sbjct: 429 LAVLTDVGALKQAEQRLAEANGQLEQRAVQAEAATRAKSAFLANMSHEIRTPMNAIIGLT 488

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +I   T  PL     +E +  +  +  HLL ++N+ILDLS+IEAG+  L     S  ++
Sbjct: 489 HLISRATQDPL----QRERLRKVDGAAAHLLQILNDILDLSKIEAGKLRLDPVDFSRDEL 544

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +   + +++  A+ K +E+    D   + +  D + + Q ++NLL NAVKFT   G V +
Sbjct: 545 IARALDVVEASARAKGLELVLDTDHLPARLRGDARLLSQALINLLGNAVKFT-EHGWVRL 603

Query: 392 TVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                   G        ++D G GIA  +   + T+F Q   +      G GLGL + + 
Sbjct: 604 RAALLREHGQRLQVRFEVQDTGIGIAPEQQARLFTAFEQADSSSTRRHGGTGLGLALTRH 663

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           I    GG     S+   G      +   R  +  PE
Sbjct: 664 IAELMGGSADAVSRPGAGSTFGLTVWLERAESVPPE 699


>gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 829

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 4/245 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R +A+E +  KS F+A++SHELRTPL +ILGFSE+     +     E Y     DIH +
Sbjct: 585 ARYKAQEASRTKSEFVANISHELRTPLQSILGFSEL---GMVRARQYEKYAAMFQDIHAA 641

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           GQ +L L+N++LD+S+IE+       +   + D++ +    LQ+  + K + +   +   
Sbjct: 642 GQRMLGLVNDLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLRLDLGRV 701

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
                 D     QV  N+LSNAVKF+  GG + ++          + ++D+GPGI   E+
Sbjct: 702 PLVSKVDSTRFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAEL 761

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             V  +F Q S        G GLGL I + I+  HGG     +    G     +LP  R 
Sbjct: 762 EAVFDAFVQSSKTR-DESGGTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLPTARY 820

Query: 478 LNFIP 482
            + +P
Sbjct: 821 TDTMP 825


>gi|229171431|ref|ZP_04299016.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
 gi|228612135|gb|EEK69372.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
          Length = 421

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 199 ERSEFLASVAHELRTPLTYVRGYADIALKENTSP---EQRLRYLSIIKDESDYITNLVQD 255

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  +  DE+ 
Sbjct: 256 LFSLAQMEQHNFSIQVKEVYLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLL-INLDEQR 314

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 315 FEQVVVNILNNAYRHSQKHSHINISVT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 373

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 374 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 419


>gi|77748572|ref|NP_641608.2| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 290

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 130/276 (47%), Gaps = 9/276 (3%)

Query: 213 KILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++ S + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE RTPL 
Sbjct: 14  ELESLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFRTPLG 73

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S   
Sbjct: 74  SILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITISPGW 132

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L+D+      M +      +  +  +  P L  ++ D+K + Q++ N +SNA+KFT  
Sbjct: 133 FDLMDLFAALRGMFRPLTDMGSTTLIFEDPPVLPMLYTDDKKLAQILRNFISNALKFTPQ 192

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V V             ++D G GI       +   F Q    ++    G GLGL I 
Sbjct: 193 -GQVRVFAQLEGDSHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLGLSIC 251

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +      GG+  I S + +G E   +LP T      
Sbjct: 252 KRFAELLGGRVGINSVVGQGSEFYVVLPVTLAAEET 287


>gi|331003935|ref|ZP_08327424.1| hypothetical protein HMPREF0491_02286 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411955|gb|EGG91355.1| hypothetical protein HMPREF0491_02286 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 486

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 18/323 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-----EK 221
           F      L + A             + A  +     I   L K  + +    A     + 
Sbjct: 164 FIASTENLVSVAENVGTTERFLYLTLSAIVVVLSVIIGGRLLKPLINLRDDIASIGYGKL 223

Query: 222 DDLIAELE-------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           D  I   E            +   + +A   + ++  F+A++SHEL+TP+ +I   ++ +
Sbjct: 224 DQKIEHNEYQLTKSISENINTTLAKLQA--ADKSRDEFVANVSHELKTPITSIRVLADSL 281

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               M  + NE Y E++ DI         +I+++L L +++     L    + +  ++++
Sbjct: 282 MS--MENVPNEMYAEFMQDISDEIDREAKIIDDLLSLVKLDKSATTLVTEQVDINQLIKQ 339

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L+  AQ+++IE+  +    + +   DE  +   I NL+ NA+K+   GG V V++ 
Sbjct: 340 ILKRLRPIAQKRDIEMTFETIREV-NADVDETKLSLAINNLIENAIKYNKDGGYVKVSID 398

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +  YI++KD+G GIA      +   F +   A      G GLGL I ++++  H G
Sbjct: 399 A-DHKFFYINVKDSGDGIAPEYKDLIFERFYRIDKARSRQTGGTGLGLAITRNVVHLHDG 457

Query: 455 QFLIRSKLREGVEVIAILPNTRV 477
              + SK  EG      +P   V
Sbjct: 458 IIKVASKEGEGTTFTVRIPLNHV 480


>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1467

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 879  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 935

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + ++ +      ++   +Y+  + ++ + +
Sbjct: 936  ---LSELKIKFFTNISHELRTPLTLIQGPIQELKEK---EKLSQKGMQYVDLMEKNTKQM 989

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 990  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1049

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1050 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEI 1109

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1110 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1467

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 879  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 935

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + ++ +      ++   +Y+  + ++ + +
Sbjct: 936  ---LSELKIKFFTNISHELRTPLTLIQGPIQELKEK---EKLSQKGMQYVDLMEKNTKQM 989

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 990  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1049

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1050 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEI 1109

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1110 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
 gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
          Length = 1444

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 856  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 912

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + ++ +      ++   +Y+  + ++ + +
Sbjct: 913  ---LSELKIKFFTNISHELRTPLTLIQGPIQELKEK---EKLSQKGMQYVDLMEKNTKQM 966

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 967  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1026

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1027 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEI 1086

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1087 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1138


>gi|150017918|ref|YP_001310172.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904383|gb|ABR35216.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1024

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/258 (33%), Positives = 126/258 (48%), Gaps = 13/258 (5%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AEK+ +I E      +    ++ AE  N  KS FL +MSHE+RTP+N I G  +++E   
Sbjct: 623 AEKEKIIVEKYRQLEVL---KEEAEIANKIKSLFLDNMSHEIRTPMNGIFGTIQLLEKTP 679

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           M    +E   +YI  +  SG  LL +IN ILD+S+IEAG ++L++   +L  I  +    
Sbjct: 680 M----SEEQSKYITLLKNSGNKLLTIINNILDISKIEAGIHKLNDGKFALKKITDDIYTN 735

Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L      K +EI    DP+   +   DE  ++Q++ NL+SNAVKFT   G +   V   S
Sbjct: 736 LLESGNSKGLEIRYYFDPNAEFIAIGDELKLKQILDNLISNAVKFTEK-GYISFRVTKVS 794

Query: 398 GRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               Y     +I D G GI E     +   F QG I++     G GLGL I++ +     
Sbjct: 795 SDNDYVKIKFTIADTGIGIDERFKSKIFGIFSQGDISVNKKYTGTGLGLSISKQLAMMMN 854

Query: 454 GQFLIRSKLREGVEVIAI 471
           G     S L EG      
Sbjct: 855 GNISFESTLGEGSTFTFT 872


>gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
 gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
          Length = 1112

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 148/360 (41%), Gaps = 6/360 (1%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              + W L+  +           + K     +  +I  +       + F++   + +  +
Sbjct: 313 LKSIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITAPLLKLTWA 372

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +  + +  +       +         + +S  + +S    ++    ELE    + 
Sbjct: 373 AERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNK---ELESNLLII 429

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +     +  N  K  FLA+ SHELRTPL+ ++G +E +     GPL    +K  +  I 
Sbjct: 430 RKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLT-AAHKYQLDIII 488

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SGQ L  L++++LD  ++  G  ++ + A+ L    R  + +      +K + I  ++ 
Sbjct: 489 SSGQRLATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSHHLLGKKTLRIINQVP 548

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V AD + + QV+ NL+ NA+K+T+  G++ ++  +       + + D G GI   
Sbjct: 549 ELPVWVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATYM-DDKIRVQVVDTGQGIPAE 606

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++  +     Q         QG GLGL I++ ++    G   + S+   G      LP  
Sbjct: 607 QLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPLA 666


>gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1467

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 879  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 935

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + ++ +      ++   +Y+  + ++ + +
Sbjct: 936  ---LSELKIKFFTNISHELRTPLTLIQGPIQELKEK---EKLSQKGMQYVDLMEKNTKQM 989

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 990  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1049

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G +      Y+ ++D+G GI + ++  +
Sbjct: 1050 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEI 1109

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1110 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|228475150|ref|ZP_04059876.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|314936206|ref|ZP_07843553.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270761|gb|EEK12163.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|313654825|gb|EFS18570.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 565

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ +I GF+E +        + ++ + ++  I +    + +L+ ++
Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLEVFLNIILKESNRIESLVMDL 399

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS IE  + E+  + ++L D+    I  LQ +A+ KNI I  +I+  +  + A E  +
Sbjct: 400 LDLSHIEQ-QTEIETTYVNLSDLAHNTIHNLQTQAKYKNIAIKSEIENDVI-IEAHEGKL 457

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI NLLSNA+ ++    +V V V         + I+D G GI + +   +   F +  
Sbjct: 458 SQVITNLLSNAINYSYENNKVIVRVYR-EDIKVNLEIQDYGIGIDKKDQKHIFERFYRVD 516

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            A      G GLGL I + I+    G  ++ S+L +G       
Sbjct: 517 KARSRDSGGTGLGLSITKHIVEALHGTIMVESELNKGSLFRVSF 560


>gi|196038119|ref|ZP_03105429.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196031389|gb|EDX69986.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 458

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSMEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--INIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|308068862|ref|YP_003870467.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858141|gb|ADM69929.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 457

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 143/315 (45%), Gaps = 18/315 (5%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
              F  F  +++AL    I         LA  L+  L      T ++ K  +++      
Sbjct: 161 LIGFAGFGTLLLALGCIFI---------LAKKLSAPLVEMEAATRNIAKGELEVRLPVRS 211

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            D++ +       L+ E ++  +     +S F A++SHELRTP+  + G++ V+    + 
Sbjct: 212 HDEVGSLSGAINDLAMELKRYRDT----RSEFFANVSHELRTPVTYLKGYANVLANGLVD 267

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E  ++Y+  I      L  +IN++ +L+++E G+      ++ +   V +    ++
Sbjct: 268 H--EEEKQQYLHIIADEAHRLTVIINDLFELAKMEEGKIAFHLESVDVRRAVEKSANKVR 325

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           ++A++K +++      ++     D   + QV+LNLL NA+++T   G + +T+   +G G
Sbjct: 326 IKAEQKGLQL-VSALETIPRCLVDPVRLEQVLLNLLDNAIRYTTE-GDIELTLQQENGFG 383

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D+GPGI   E+P +   F +   +      G GLGL I Q  +   GG   + S
Sbjct: 384 V-IMISDSGPGIPPDELPYIFERFYRVEKSRSRELGGTGLGLAIVQKWVQLQGGMIEVES 442

Query: 461 KLREGVEVIAILPNT 475
           +L  G       P  
Sbjct: 443 ELGRGTVFRLSFPFA 457


>gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
 gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
          Length = 581

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP+ ++   +E ++       + +    +I  IH     
Sbjct: 352 ELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGA--ASDPDVAAGFIDKIHLEVDK 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+ DLS IE+G+  L+     +   ++     L  +A+   I +  ++  +L  
Sbjct: 410 LAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPETLPQ 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE  + QV++NL+ NA+KFT  GG++ + V  T  +   + + D+G GI E ++  V
Sbjct: 470 VRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGV-RTQSQTLVVYVTDSGIGIPEDDLTRV 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +      G GLGL I++ I+  HGG     S   +G      LP  
Sbjct: 529 FERFYKVDKSRSG--GGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581


>gi|229825439|ref|ZP_04451508.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
 gi|229790002|gb|EEP26116.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
          Length = 494

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 15/269 (5%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E           ++  + E   K+ F+++++HELRTP+N I G ++ +    +      
Sbjct: 107 TETRNMARELKACKEELKSELKYKTEFVSNITHELRTPVNGIQGMTKNLLNTELDSF--- 163

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E +G I +   ++  +IN++LD S++E+ +  L   A S  + + + +        E
Sbjct: 164 -QLETVGIIEQCCVNMSKIINDLLDFSKMESDKLVLENKAFSFREFLNKVMAFNVTLVNE 222

Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           K +++   +   +   +  DE  + Q+  NL+SNAVKFT   G V V          ++ 
Sbjct: 223 KGLKLLVHVGDDIPKYLIGDELRLTQIFNNLISNAVKFT-TIGHVAVEASLIREEDDFVE 281

Query: 405 ----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GIA+  +  +   F Q   +      G GLGL I++ ++   GG   + S
Sbjct: 282 LFFMVVDTGIGIAKENMDKLFKKFSQVDASTTRRFGGTGLGLSISKKLVELMGGDIKVES 341

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489
           ++ +G           V+    ++  E+T
Sbjct: 342 EVGKGSSFSF-----NVILKKADEAEETT 365


>gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1516

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 137/261 (52%), Gaps = 7/261 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +  +   ++   + +E N  K++F+  +SHE RTPL +ILG++E++E  +   L+ 
Sbjct: 1260 ITEHKQIQQKIEKALIKEKELNQLKTQFIDVVSHEFRTPLTSILGYAELLERHS-DKLSE 1318

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    Y+  I  +GQ L +LI ++L +SR E+G+ +L+   ++L    ++ I  +Q+   
Sbjct: 1319 QKKNNYLHKIRIAGQRLSDLIEDVLCISRAESGKLQLNPHPLNLEVFCQDLIEEIQIGIG 1378

Query: 345  EKNIEIFQKIDPSLSSVWA---DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            + +  IF +   S +S+     DEK +R ++ NLLSNA+K++++G RV +++ + + +  
Sbjct: 1379 KNHEMIFTRQPDSFNSLNGILLDEKLLRHILSNLLSNALKYSSLGSRVELSLYYKNEQ-V 1437

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
               I D G GI     P +  SF + S        G GLGL I    +  HGG     SK
Sbjct: 1438 IFEISDQGIGIPAEAHPKLFDSFYRASNVGN--IPGTGLGLHIVYKYVTLHGGTIDFSSK 1495

Query: 462  LREGVEVIAILPNTRVLNFIP 482
            +  G      +P +  L  +P
Sbjct: 1496 ISVGTTFRVKIPISETLCKLP 1516


>gi|301301240|ref|ZP_07207395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851116|gb|EFK78845.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 358

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 122/253 (48%), Gaps = 19/253 (7%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL A+ EV K   D               F+ ++SHE++TP+ AI GFSE +    +  
Sbjct: 121 RDLTAQKEVEKKQLD---------------FVGNLSHEIKTPITAITGFSETLLDGAL-- 163

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E  K++I  IH     L NL+++++ +SR+      L+   +++  +V++ + +   
Sbjct: 164 NDKEVSKQFIEIIHDESTKLSNLVDDMITISRL-NEHENLNIELVNIFKLVKDTLQLFSH 222

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             ++K + +  +ID  L S++ D+  ++ +I NL+ NA+++    G + + V        
Sbjct: 223 EIEKKRLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEW 281

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I D G GI++ +   +   F +   +   A  G GLGL + +  +    G+  ++S+
Sbjct: 282 VFVISDTGIGISDEDKERIFERFYRVDKSHSKAVGGTGLGLAVVKESVDALSGRIKVKSQ 341

Query: 462 LREGVEVIAILPN 474
           + +G     ILP 
Sbjct: 342 INKGTTFYVILPR 354


>gi|150005253|ref|YP_001299997.1| putative two-component histidine sensor kinase [Bacteroides
           vulgatus ATCC 8482]
 gi|149933677|gb|ABR40375.1| putative two-component histidine sensor kinase [Bacteroides
           vulgatus ATCC 8482]
          Length = 667

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 409 LIAIYYIIRINHLKHNLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 468

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +    ++Y   I ++   LL+LIN+ILD+SR+E+GR +       ++++
Sbjct: 469 ---SVLVSDDSSPAEKEQYCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEECDVVEL 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +  ++   +   + +F+   PSL  V  D + ++QV++NLLSNA KFT   G + +
Sbjct: 526 CQTALSTVEYGRKTSALFLFETPVPSLV-VKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 583

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           TV       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 584 TVAIDKQHQQLELSVSDTGCGIPPDKSEKVFERFEKL----NEYSQGTGLGLAISRLIIE 639

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 640 NLGGKIWVDKDYTEGARFVFTHPLTK 665


>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 945

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  ++  +E ++ A+  N AK+ FLA+MSHE+RTPL  +LG  E++    +     
Sbjct: 438 ISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQLDN--- 494

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+Y+  I  S   LL LI ++LD+S+IEAG+  L  S  S +D+V E I      AQ
Sbjct: 495 -QQKDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAAAAQ 553

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K ++ +  +DP L  +   D   +RQ++ NLL+NAVKFT   GR+ + V   S  G   
Sbjct: 554 AKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDT-GRIVLRVRTESRDGERS 612

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GIA+ +   +   F Q          G GLGLPI Q +     G   + 
Sbjct: 613 NILWQVSDTGRGIAQDDQTLIFEPFYQTEGNTN-VIAGTGLGLPICQRLTQLMNGNIRMV 671

Query: 460 SKLREGVEVIAILPNT 475
           S+L  G      LP  
Sbjct: 672 SELGLGSSFTLTLPLE 687


>gi|257486235|ref|ZP_05640276.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1189

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 675 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 734

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 735 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 790

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT +G  ++ +    +     
Sbjct: 791 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 850

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 851 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 910

Query: 459 RSKLREGVEVIAIL 472
            S   +G  +   L
Sbjct: 911 DSVPGQGTRISMNL 924


>gi|120437042|ref|YP_862728.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117579192|emb|CAL67661.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 743

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 141/257 (54%), Gaps = 10/257 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +      L+   S     ++ AE+ +LAK++FL +++HELRTPL A+ G + ++  E+  
Sbjct: 338 RARANELLQKKNSELILAKENAEKASLAKAQFLTTITHELRTPLYAVTGLTHLLLEES-- 395

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E+ KE++  +  SG++LL+LIN ILDL+++EA + E+ ++   L   + + +I L+
Sbjct: 396 --PTESQKEHLNSLKFSGEYLLSLINNILDLNKLEANKVEIVKTDFDLEKRMSDVLIALK 453

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             A E+N +I    D ++   +  D   + Q+++NLL N++KFT   G + ++V     +
Sbjct: 454 NSADERNTKIHFDFDQNIPKNLVGDPLKISQILINLLGNSIKFT-EDGDIWISVKQVRRK 512

Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 +  IKDNG GI + +   +  +F QGS  I     G GLGL I +++++    +
Sbjct: 513 EKMVSLFFEIKDNGEGIGKEKQKAIFENFTQGSTQINRKFGGTGLGLSIVKNLLSLLNSE 572

Query: 456 FLIRSKLREGVEVIAIL 472
             + S+L +G +    L
Sbjct: 573 IELESELGKGSKFTFEL 589


>gi|254883721|ref|ZP_05256431.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836514|gb|EET16823.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 667

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 409 LIAIYYIIRINHLKHNLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 468

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +    ++Y   I ++   LL+LIN+ILD+SR+E+GR +       ++++
Sbjct: 469 ---SVLVSDDSSPAEKEQYCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEECDVVEL 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +  ++   +   + +F+   PSL  V  D + ++QV++NLLSNA KFT   G + +
Sbjct: 526 CQTALSTVEYGRKTSALFLFETPVPSLV-VKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 583

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           TV       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 584 TVAIDKQHQQLELSVSDTGCGIPPDKSEKVFERFEKL----NEYSQGTGLGLAISRLIIE 639

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 640 NLGGKIWVDKDYTEGARFVFTHPLTK 665


>gi|2961066|gb|AAC39451.1| histidine kinase 1 [Candida albicans]
          Length = 2471

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 10/264 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +L     +  +    E      +  +  AE+    K+ FLA+MSHE+RTP N++L F+ 
Sbjct: 1962 DLLQLFCTQAAVALGKERLLLQMELAKMAAEDATDEKASFLANMSHEIRTPFNSLLSFAI 2021

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +    +      T +EY+  I  S    LN+I+ IL  S+IE G + L  +  SL D +
Sbjct: 2022 FLLDTKLDS----TQREYVEAIQSSAMITLNIIDGILAFSKIEHGSFTLENAPFSLNDCI 2077

Query: 333  RECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               I +         IE+      P +  V  D    RQ+++NL+ NA+KFT   G V +
Sbjct: 2078 ETAIQVSGETILNDQIELVFCNNCPEIEFVVGDLTRFRQIVINLVGNAIKFTTK-GHVLI 2136

Query: 392  TV---GWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +      T  R    +S++D+G GI++     V  +F Q   + +    G GLGL I++ 
Sbjct: 2137 SCDSRKITDDRFEINVSVEDSGIGISKKSQNKVFGAFSQVDGSARREYGGSGLGLAISKK 2196

Query: 448  IMANHGGQFLIRSKLREGVEVIAI 471
            +    GG     S+   G      
Sbjct: 2197 LTELMGGTIRFESEEGIGTTFYVS 2220


>gi|68469773|ref|XP_721138.1| likely histidine kinase osmosensor and regulator Chk1p [Candida
            albicans SC5314]
 gi|68470014|ref|XP_721017.1| likely histidine kinase osmosensor and regulator Chk1p [Candida
            albicans SC5314]
 gi|46442914|gb|EAL02200.1| likely histidine kinase osmosensor and regulator Chk1p [Candida
            albicans SC5314]
 gi|46443042|gb|EAL02327.1| likely histidine kinase osmosensor and regulator Chk1p [Candida
            albicans SC5314]
          Length = 2471

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 10/264 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +L     +  +    E      +  +  AE+    K+ FLA+MSHE+RTP N++L F+ 
Sbjct: 1962 DLLQLFCTQAAVALGKERLLLQMELAKMAAEDATDEKASFLANMSHEIRTPFNSLLSFAI 2021

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +    +      T +EY+  I  S    LN+I+ IL  S+IE G + L  +  SL D +
Sbjct: 2022 FLLDTKLDS----TQREYVEAIQSSAMITLNIIDGILAFSKIEHGSFTLENAPFSLNDCI 2077

Query: 333  RECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               I +         IE+      P +  V  D    RQ+++NL+ NA+KFT   G V +
Sbjct: 2078 ETAIQVSGETILNDQIELVFCNNCPEIEFVVGDLTRFRQIVINLVGNAIKFTTK-GHVLI 2136

Query: 392  TV---GWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +      T  R    +S++D+G GI++     V  +F Q   + +    G GLGL I++ 
Sbjct: 2137 SCDSRKITDDRFEINVSVEDSGIGISKKSQNKVFGAFSQVDGSARREYGGSGLGLAISKK 2196

Query: 448  IMANHGGQFLIRSKLREGVEVIAI 471
            +    GG     S+   G      
Sbjct: 2197 LTELMGGTIRFESEEGIGTTFYVS 2220


>gi|317496244|ref|ZP_07954604.1| hsp90-like protein [Gemella moribillum M424]
 gi|316913819|gb|EFV35305.1| hsp90-like protein [Gemella moribillum M424]
          Length = 647

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E +   +  F++++SHELRTPL  +  + E +E   +   + E   ++I  IH+    ++
Sbjct: 411 ERQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVI--NDKELAPQFIDTIHKETNRMI 468

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++NE++ L +++       +  I +  ++ +     +L   EKN    +    +   V 
Sbjct: 469 RMVNELMQLGKMDIKEEHYEKEFIDINKLIEQISNRFELTHPEKN--FIKHTSKTPIFVE 526

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421
            D+  + QV  N+++NA+K++  G  + + V       +  ISIKD G GI    I  + 
Sbjct: 527 GDQDKLTQVFDNIMNNAIKYSPNGKNITIRVRQNYNHNRVNISIKDEGVGIPLVHIDKIF 586

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   + + +  G GLGL +A++I+  H G+   +S+   G  +   LP  R+ + 
Sbjct: 587 NRFYRVDKSRQRSMGGTGLGLALAKNIIEAHKGRIWAQSREGYGTIIFVTLPCERIDDE 645


>gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 130/330 (39%), Gaps = 12/330 (3%)

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
               + +     + +  P       +A+ +  +    +  +  T L  F    + +    +
Sbjct: 755  TTVSALERRITYTNLNPGTYTFKVKAMNNDRIWSKEITSLQITILPPFWATGWAIALYII 814

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269
              +         I  ++  K   ++ R   ++  E +  K RF  ++SHE RTPL  I+ 
Sbjct: 815  AGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMT 874

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              E +        +    ++ +  I+R+   LL L+N++LD  +I+     L  S   ++
Sbjct: 875  PLEKLMKTEKDLES----QQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIV 930

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              VR+     +  +++K I        +   +  D   + +++ NLLSNA KFT  GG +
Sbjct: 931  PFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTI 990

Query: 390  HV----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPI 444
             V     +         I + D+G GI   +   +   F Q S   K     G G+GL +
Sbjct: 991  SVTLSLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVSSPDKGNPVVGTGIGLHL 1050

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +  H G   ++S+   G      LP 
Sbjct: 1051 CREFVRMHHGTITVKSEPGAGSTFTVTLPV 1080


>gi|298376642|ref|ZP_06986597.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266520|gb|EFI08178.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 533

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 301 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 356

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+IE+G+ E   + + L +I         LR    ++++  + D 
Sbjct: 357 SNEFLLQLIGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRV-VPDVKVIFESDG 415

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 416 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 473

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 474 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 526


>gi|221234714|ref|YP_002517150.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|220963886|gb|ACL95242.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 576

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/475 (21%), Positives = 170/475 (35%), Gaps = 39/475 (8%)

Query: 19  TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI 78
               +G    +      E       S  +  P+    ++ +          P    WS+ 
Sbjct: 13  WRVQMGTVLRTFWTNLAEDYRPAALSRRKQVPLRLFVIVTLCVAALILKNMPFLFGWSVA 72

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
            L V    L   K+ +N+        VW   +    +A    W  L L E GT       
Sbjct: 73  YLVVQICELYALKRFINAADPTD--RVWVNLVSDVALATVFGWLALPLWEMGTPAGAAGA 130

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +   +  +       +       A      P V  L    +++    D  L   L     
Sbjct: 131 MLLLSASIFTA---LMGAEGCMVAFISGAGPHVAYLFITPLLAGGGGDPVLPYFLIGGGL 187

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F   I      S+  + + +  +    A++                   A+S  +A +SH
Sbjct: 188 FTLTIAMTFLWSHRAMKAEREARRAAEAQV------------------AARSALIAMVSH 229

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTP+NAI+  +  ++  + G             I  +G+ +  L+N++LDLS+IEAGR
Sbjct: 230 ELRTPINAIVNGAGRLDAGSAG------------LIADAGRMMRTLLNDLLDLSKIEAGR 277

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
             +      L   V + +   +  A+ K + +       L   V  D   +RQV+ NL+S
Sbjct: 278 MGVEMVDHDLRAQVSDAVDFWRGAAEAKGVTLTLTGAERLPRWVRGDPMRLRQVLNNLIS 337

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           NAVKFT  GG + V V   +       I ++D GPG+ E +I  +   + Q         
Sbjct: 338 NAVKFTTEGG-ITVDVRPVASGAAAVEIEVRDTGPGLTEAQIIRLFDPYEQLGSETARNF 396

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G GLGL I++ +    GG+    S    G   +  LP         +   E   
Sbjct: 397 GGTGLGLAISRDLARLMGGELAASSAPEGGARFVLRLPTPAGAEPTIQALAEEQD 451


>gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 1202

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN I+GF++++    +      + ++Y+  I+ S   L+++IN++LD 
Sbjct: 691 FLANMSHEIRTPLNGIIGFTDLLMRSELEN----SQQKYMQTIYNSAISLMDIINDVLDF 746

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+ ELSE    LI++  + I +++ +A +K +E+   I P L   V+AD   +RQ
Sbjct: 747 SKIEAGKLELSEERTDLIELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYADAVRLRQ 806

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFG 425
           ++ NLL N+VKFT  G   ++++    SG         SI+D G GIA   +  + ++F 
Sbjct: 807 ILTNLLGNSVKFTHEGEIELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLKKIFSAFD 866

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           Q   +      G GLGL I+  ++     +  + S L EG     
Sbjct: 867 QEDASTTRKYGGSGLGLTISNKLLNLMDSKLELTSVLNEGSTFSF 911


>gi|323703747|ref|ZP_08115386.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531271|gb|EGB21171.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 482

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 142/323 (43%), Gaps = 28/323 (8%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P+   L  Q +  + +  I++   L   L         LF          A         
Sbjct: 169 PLRELLIRQLLTFLFLSLIAMLIGLVGFLPILRKTLVPLFNMVDTAEQIDAGNLAKRFPT 228

Query: 229 EVAKSLSD-------------ETRKRAEEENLAK-SRFLASMSHELRTPLNAILGFSEVI 274
           +  +   D             E    AE E   +  RF+A  SHELRTPL +I GF EV+
Sbjct: 229 QQGQMEIDRLAESFNGMLERLEASFAAERETKEQMRRFIADASHELRTPLTSIHGFLEVL 288

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID-IVR 333
               +     +   + +  +H   + L  L++++L L++++   +      I L + ++ 
Sbjct: 289 LRGAV--NQPDQLHKALKSMHGESERLNKLVHDLLLLAKLDRTPH------IELTEGLLN 340

Query: 334 ECIIMLQLRAQ--EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-AIGGRVH 390
             I  ++ + +    N ++  +++P+L   + D   ++QVILNL  NAV+ T    G++ 
Sbjct: 341 TVIRDMEPQLRILSGNRKLSIEMEPNLKCKY-DTDKIKQVILNLFHNAVQHTDPDEGQIK 399

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +++   +     +S++DNGPGI+E  +  V   F +   +      G GLGL I++SI+ 
Sbjct: 400 ISLVRKNNG-VALSVQDNGPGISEDHLNRVFDRFYRIDSSRTRKYGGSGLGLAISKSIVD 458

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
            HGG   + S++ +G      LP
Sbjct: 459 AHGGTISVTSQVGKGSTFNIWLP 481


>gi|227514134|ref|ZP_03944183.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087505|gb|EEI22817.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
          Length = 619

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E +    +   + E    ++G +    + ++ +IN++L L
Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELAPRFLGVVSDETERMIRMINDLLSL 437

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKIDPSLSSVWAD 364
           SR++AG  +L+   +++ ++    +    +  +       +K   I +        V  D
Sbjct: 438 SRMDAGTAKLNLEYVNINELFNHILNRFDMIIKNEAADPSQKKYTIVRYFTKKDLWVEID 497

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
                QV+ N+++NAVK++  GG +   +  T      +SI D G GI   ++  +   F
Sbjct: 498 TDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRKDLGHIFDRF 556

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +        + G GLGL I++ ++   GGQ  + S   +G      LP
Sbjct: 557 FRVDKDRSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 581

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +   + ++SHELRTP+  I    E +    +   + E  K+++  I      L   ++E
Sbjct: 359 MRKELVGNISHELRTPITGIKAMVETLHDGAID--DKEAAKDFLTRIESEVDRLAQTVSE 416

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           + +LSRIE G+ EL    + L  +V++ I  LQ  A+ + + +   +   L  V AD   
Sbjct: 417 LTELSRIETGKAELRLEPLDLNVLVKDVIEQLQPLAERQQVTVSATLAKDLPEVLADRDR 476

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ I+NL+ NAVKF  +GG V +    T+     + I D G GI++ ++P V   F + 
Sbjct: 477 IRQTIINLVHNAVKFNRVGGNVKLYTK-TNNNEVIVDISDTGIGISKDDLPHVFERFYKA 535

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A   +  G GLGL IA+  +  H G+  + S+   G      LP  
Sbjct: 536 DRARSKS--GSGLGLAIAKHTIQAHNGKIWVASEQGNGSTFSFSLPLK 581


>gi|196041818|ref|ZP_03109107.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027312|gb|EDX65930.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 463

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +   +  +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +    ++H++V     +   I+++D G G+   ++P +   F + 
Sbjct: 350 FEQVVMNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGMPPEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G S +     +     E  ++Y+  I+RS   LL +I++ILD 
Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSEL----PEHARDYLEKINRSSLILLRIIDDILDF 626

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S+IEAG+  +  +   L D++++   ++  R ++K +E+    +P L   +  D   + Q
Sbjct: 627 SKIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQ 686

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++LNL+ NA+KFT  G   V ++            +S+ D G G+ + ++  +  +F Q 
Sbjct: 687 ILLNLIGNALKFTEAGEIVVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFSQA 746

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +      G GLGL I + ++   GG   + S    G      +
Sbjct: 747 DGSTTRRFGGTGLGLAICKQLVELMGGTISVESTPGAGSTFSFTI 791


>gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 2/228 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  KS F++++SHE+R+P+N++L   +VI     G L  E  ++ +   +R  ++L  + 
Sbjct: 262 DRMKSEFVSTVSHEIRSPMNSVLMQIQVILDGLAGELT-EKQRDILTRAYRKVENLAQMT 320

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            E+LDL+RIE+G   L    +++ D++R+ +      A   +I +   I   L  V A+ 
Sbjct: 321 TELLDLARIESGLITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANR 380

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + M +V+ NL++NA+K++  GGR+ V+    +    +I +KD G GI+  +   +   F 
Sbjct: 381 RNMEEVLSNLITNAIKYSPGGGRITVSASI-ANDYLHIRVKDTGMGISAEDQHRIFERFY 439

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +          G GLGL I +SI+ +H G+  I S+  EG      LP
Sbjct: 440 RVKDKKTRYINGTGLGLVIVKSILESHQGRIKIESQEGEGSTFSFFLP 487


>gi|20260804|gb|AAK54092.2|AF362373_1 histidine kinase DhkL [Dictyostelium discoideum]
          Length = 1709

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 12/258 (4%)

Query: 230  VAKSLSDETRKRAEEENLAKSRF-LASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              K + +E++   + + + KSR  L+ MSH++RTP++ I+G ++++   ++         
Sbjct: 811  TQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTPMSNIIGMADLLLDTSLSQH----QH 866

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             Y+  I  S   LL +IN+ILD+S+IEAG+ ++   +      V + +  +  R Q K +
Sbjct: 867  HYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGL 926

Query: 349  EIFQKIDPSLSSVWADEK-GMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403
            E+   +DP + ++       + Q++ NLL N++KFT   G + +         S     +
Sbjct: 927  ELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFTDK-GEISICCLLNDETDSEYEIKV 985

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKL 462
             ++D G GI +  +P +  +F Q    I     G GLGL I + ++     G+  + S+ 
Sbjct: 986  DVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQY 1045

Query: 463  REGVEVIAILPNTRVLNF 480
              G     IL   + L  
Sbjct: 1046 GHGSTFTCILKFKKFLPS 1063


>gi|71907262|ref|YP_284849.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846883|gb|AAZ46379.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 903

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 4/316 (1%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             A+ +    V  A +  A          +   +A            +     ++ +   
Sbjct: 586 WRALPVDAPFVQFAEAELAGAIGSASARVMVASVAQEEDLGLEEVLDILDEATQVRAHSR 645

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E +    ELE A +   E  +R  E +  K  F+++++HELRTPL +I   SE++  +  
Sbjct: 646 ELEAKQRELEAATTELREANERLRELDRMKDDFISTVTHELRTPLTSIRALSEMLHEDPR 705

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L       ++G I    + L  LIN+ILD++++E+GR E +   + L +I RE +  +
Sbjct: 706 LELV--ERMRFLGIIVGEAERLTRLINQILDMAKLESGRAEWTTGEVDLGEIARETMDSV 763

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSG 398
               ++K + +   I      V AD   + QV++NLLSNAVKF     G V V +G   G
Sbjct: 764 GQLFRDKGVLLEGDIPDGGPIVLADRDRLTQVLINLLSNAVKFVPGELGCVQVKIG-VDG 822

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++DNGPG+   E   +   F QG   +    +G GLGLPI++ I+   GG+  +
Sbjct: 823 NMVRVEVRDNGPGLTAEECEVIFEKFRQGGNTLTGKPKGTGLGLPISRQIIEYFGGKLWV 882

Query: 459 RSKLREGVEVIAILPN 474
            S   EG   I  +P 
Sbjct: 883 ESHPGEGANFIFTVPL 898


>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
 gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1439

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTP+NAI+G + +     +    N   K Y+  +  + + LL +IN+ILD
Sbjct: 716 DFLANMSHEIRTPMNAIIGMTHLALQTEL----NSRQKNYLTKVDNAAKGLLGIINDILD 771

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
           LS+IEAG      +  SL   +     M  L+A+E+ +E+   I P +   +  D   + 
Sbjct: 772 LSKIEAGMMHFEHAPFSLDASLERLSDMCSLKARERGLELLYDIAPEVPDQLIGDSLRLG 831

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFG 425
           QV+LNL+ NA+KFT   G + VTV   + R         + D G G+   +   + ++F 
Sbjct: 832 QVLLNLVGNAIKFTEA-GEITVTVKLLANRENEVDLGFEVIDTGIGMNVEQQSQLFSAFT 890

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           Q   +      G GLGL I + I+   GG   + S+   G      L   R     
Sbjct: 891 QADTSTTRKYGGTGLGLSICKRIVELQGGSIGVSSQPGIGSRFTFQLQFGRATEQT 946


>gi|66811194|ref|XP_639305.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74854804|sp|Q54RP6|DHKL_DICDI RecName: Full=Hybrid signal transduction histidine kinase L
 gi|60467894|gb|EAL65907.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1709

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 12/258 (4%)

Query: 230  VAKSLSDETRKRAEEENLAKSRF-LASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              K + +E++   + + + KSR  L+ MSH++RTP++ I+G ++++   ++         
Sbjct: 811  TQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTPMSNIIGMADLLLDTSLSQH----QH 866

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             Y+  I  S   LL +IN+ILD+S+IEAG+ ++   +      V + +  +  R Q K +
Sbjct: 867  HYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGL 926

Query: 349  EIFQKIDPSLSSVWADEK-GMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403
            E+   +DP + ++       + Q++ NLL N++KFT   G + +         S     +
Sbjct: 927  ELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFTDK-GEISICCLLNDETDSEYEIKV 985

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKL 462
             ++D G GI +  +P +  +F Q    I     G GLGL I + ++     G+  + S+ 
Sbjct: 986  DVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQY 1045

Query: 463  REGVEVIAILPNTRVLNF 480
              G     IL   + L  
Sbjct: 1046 GHGSTFTCILKFKKFLPS 1063


>gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
 gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
          Length = 631

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    + +F++++SHELRTPL ++  +SE +    +   + +   E++  I      ++
Sbjct: 379 EKIERDRKQFVSNISHELRTPLTSVRSYSEALVDGAI--KDEKVAVEFLNVIQTETDRMI 436

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-----QEKNIEIFQKIDPS 357
            +I+++L LSR++A +  ++   I   D+V   +    +       + KN  I +++   
Sbjct: 437 RMISDLLHLSRMDAKQQVINRELIIFKDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEE 496

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D+  + QVI N+++NA+K++  GG ++V +  T  +   +SI+D G GI +  I
Sbjct: 497 EVWVEIDQDKLIQVIDNIMNNAIKYSPDGGTIYVRLMSTHNQ-LVLSIQDQGLGIPQESI 555

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           P +   F +   A   A+ G GLGL IA+  +  H G+  + S   +G      LP   
Sbjct: 556 PHLFDRFYRVDKARSRAQGGSGLGLSIAKEEIELHNGKIWVNSIENKGTTFFISLPFEE 614


>gi|298529762|ref|ZP_07017165.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511198|gb|EFI35101.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 622

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AKS FLA+MSHE+RTP+N ++G S+++    +    N   +   G I  SG++LL++IN 
Sbjct: 243 AKSMFLATMSHEIRTPMNGVMGLSQLLLETPL----NTEQRHLAGLIRSSGENLLDIINN 298

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           ILD S+IEA R  L +    L  ++ E   ++++ A EK+I+   +IDP+L + +  D  
Sbjct: 299 ILDFSKIEADRLVLEQVDFDLRTMMDEITHIMKINAGEKDIDFVSRIDPALETSLQGDPG 358

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLT 422
            +RQ++ NL  NAVKFTA GG V + V               I D GPGI +     + T
Sbjct: 359 RLRQILFNLSGNAVKFTAQGG-VRLEVSPLTKLEKSIQILFEITDTGPGIDQETKNRLFT 417

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           ++ Q   +      G GLGL I++S++    G+  + S    G     
Sbjct: 418 AYQQAESSTSREYGGSGLGLSISKSLVELMHGEIGLESSPGTGSTFWF 465


>gi|168233586|ref|ZP_02658644.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472520|ref|ZP_03078504.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458884|gb|EDX47723.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332352|gb|EDZ19116.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 920

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTLAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|325914837|ref|ZP_08177172.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538928|gb|EGD10589.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 291

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 130/274 (47%), Gaps = 9/274 (3%)

Query: 213 KILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++ + + +   L  ELE          +  D+  ++  E +  KSRFL+ MSHE RTPL 
Sbjct: 15  ELATLREQNQALREELEETNQGVLALYAELDQQAEQLREVSELKSRFLSYMSHEFRTPLG 74

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S   
Sbjct: 75  SILSITRLLEDGMDGPLNTEQLKQ-VRFVSASTRELTEMVDDLLDLAKIEAGRITISPGW 133

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L+D+      M +         +  +  P L  ++ D+K + Q++ N +SNA+KFT  
Sbjct: 134 FDLMDLFAALRGMFRPLTDVGTTTLIFEDPPVLPMLYTDDKKLAQILRNFISNALKFTPQ 193

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V V            S++D G GIA      +   F Q    ++    G GLGL I 
Sbjct: 194 -GHVRVLAQLEGTDHVRFSVQDTGIGIAPELHDALFEDFVQVDSPLQKRLTGTGLGLSIC 252

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +      GG+  I S + +G E   +LP T    
Sbjct: 253 KRFAELLGGRVGINSVVGQGSEFFVVLPVTLAAE 286


>gi|229092208|ref|ZP_04223389.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
 gi|228691199|gb|EEL44963.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
          Length = 448

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSMEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--INIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|254255395|ref|ZP_04948711.1| Response regulator receiver [Burkholderia dolosa AUO158]
 gi|124901132|gb|EAY71882.1| Response regulator receiver [Burkholderia dolosa AUO158]
          Length = 739

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 121/273 (44%), Gaps = 11/273 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L DE R    E N AK +FLA + HELR PL  I  
Sbjct: 324 SAVEVTEHVAAREKLVAANAERDRLLDELR----EANHAKDQFLAVLGHELRNPLTPISL 379

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     +  I R   H++ LI+++LD+SRI  G+ EL +  + L 
Sbjct: 380 ALELIRNRDGHATPNE-----LAIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEVVRLA 434

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +       L     D   + QV+ NLL+NA K+T  GG +
Sbjct: 435 DIVDRAVEVASPLLEQRRHRLHVDAALDL-HCHGDPVRLSQVVANLLTNAAKYTPPGGEI 493

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V         + ++DNG GI    + ++   F +          G+G+GL + +S +
Sbjct: 494 ALRVARGDTDDVLVEVRDNGAGIPRDRLDSIFEPFFRIDGGSSHMHGGLGIGLALVRSFV 553

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
             HGG     S+ L  G      LP  R     
Sbjct: 554 RLHGGTVRADSEGLGSGSTFTIALPAYRPKEVA 586


>gi|218233945|ref|YP_002365446.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218161902|gb|ACK61894.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 463

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKHISIAIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|49480108|ref|YP_037335.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331664|gb|AAT62310.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 458

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSMEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 23/250 (9%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E      + F++ +SHELRTP++++ G  +++    +G L  E  ++ +     +
Sbjct: 289 ERKRLE------NEFISVVSHELRTPMHSLAGALDLLSTGELGVLT-EQGQQILSVATTN 341

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ L+N+ILDL R+++G+  ++ S  ++ ++V + +  +Q  A    +++  +    
Sbjct: 342 AERLIRLVNDILDLERLKSGKMSVNRSNCNIANLVTQAVESMQAMADNAQVQLQVQSMSV 401

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------------GQYI 403
             +V  D   + Q + NLLSNA+KF+  GG V +TV                      +I
Sbjct: 402 PVTVDCD--RILQTLTNLLSNAIKFSPAGGTVLLTVELDKPTLEEPASSNTLQTVPQLHI 459

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI   ++ T+   F Q   +    + G GLGL I + I+  HGG+    S L 
Sbjct: 460 TLSDQGRGIPFEQLETIFERFQQVDASDSRRKGGTGLGLAICRQILQQHGGRIWAESTLG 519

Query: 464 EGVEVIAILP 473
           +G      LP
Sbjct: 520 QGSTFHVCLP 529


>gi|170695834|ref|ZP_02886975.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
 gi|170139258|gb|EDT07445.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
          Length = 606

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/455 (20%), Positives = 168/455 (36%), Gaps = 29/455 (6%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS---LIT 79
               P +   D +++  L+ +             +LVA         P+F          
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYWPAIPSPPLFIACFGFYAAA 60

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
                A     ++       +     W     V  +   L       +     +P+    
Sbjct: 61  NCAGLALWICNRRY----PHLLSPRGWINVHAVRGVL--LYSAPGIAIWFAFQSPQSDLP 114

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS 198
                +L+ L+     +       F +  P ++                 LA +LA    
Sbjct: 115 LLHTVMLVTLAAGVFMSNGFDLLNFATAIPFLLFPSIVLHFGMHTFDRTILAIVLAFFFC 174

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                     K   +++  + ++  L              +  AEE +LAK+RF A+ SH
Sbjct: 175 AINVYALSYRKLFQQVVQARVDQQYLAES-------LAAQKHVAEEASLAKTRFFAAASH 227

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           +LR PL+AI   +  +      P  +    E+   I  + + L  L N++LDL+R+E+G 
Sbjct: 228 DLRQPLHAIGLLAASLNDSAATPAQHAKTAEH---IVHNVEALNQLFNQVLDLARLESGV 284

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            ++      L ++        + +A  K + +     P+   V  D   + +V+ NLLSN
Sbjct: 285 TQVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTSMVVHDDPVLLERVLSNLLSN 342

Query: 379 AVKFTAIGGRVHV---TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           AV++T   G + +    VG T+G   YI ++D+G GI   E   +   F Q +   + A 
Sbjct: 343 AVRYTEE-GAIWLGFRRVGRTNGG--YIEVRDSGIGIPAQEHERIFEEFYQVANPQRDAR 399

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           QG GLGLP  + ++   GG+  +RS    G     
Sbjct: 400 QGHGLGLPTVKRLVGMLGGELQLRSAPGRGSVFRF 434


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +       +  F++S+SHELRTPL +I G++E +    M     E    ++  I +  + 
Sbjct: 356 KLRNLERVRRDFVSSVSHELRTPLTSIKGYTETLLEGAM--HEPEHASAFLKIILQESEQ 413

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+N++LDLSRIE+GR E   SA+ L  ++ + +  L+L  ++K + +   I   +  
Sbjct: 414 LTALVNDVLDLSRIESGRIEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQ 473

Query: 361 VWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           + AD   +  V+ NLL NA+K+     G++ ++    +G    + ++DNG GI++ ++  
Sbjct: 474 LHADSGYLEIVVRNLLDNAIKYVDAEHGKIRISAFR-NGDFVQLDVEDNGIGISKQDLGR 532

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   A      G GLGL I + I+  H G   +RS++ +G     + P 
Sbjct: 533 IFERFYRVDKARSRELGGTGLGLAIVKHIVLAHKGHVEVRSRVSQGSVFSVLFPV 587


>gi|146301096|ref|YP_001195687.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146155514|gb|ABQ06368.1| multi-sensor hybrid histidine kinase/response regulator
           [Flavobacterium johnsoniae UW101]
          Length = 1189

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 133/290 (45%), Gaps = 16/290 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN------------- 246
              I   L     K+ + + E      ELE       E     EE+N             
Sbjct: 456 LEAINAELEAQTEKLQASEEELRVQQEELEQTNEELSERSVLLEEKNNEIQKKSEALELT 515

Query: 247 -LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              KS FLA+MSHELRTPLN+IL  S ++       +NNE   E+   I  SG  LL LI
Sbjct: 516 TRYKSEFLANMSHELRTPLNSILLLSRLLSENNNQSMNNEEI-EFAKVIQSSGNSLLGLI 574

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +EILDLS+IEAG+ EL    ++  +I      +    A+EK IE       +   +  D+
Sbjct: 575 DEILDLSKIEAGKMELEFLDVTTKEITDTLWNLFNFVAKEKGIEFEIISKDAPLVIKTDK 634

Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             + Q++ NL+SNA+KFT  G   + + +     +     +KD G GI   + P V  +F
Sbjct: 635 MRLEQILKNLISNAIKFTEKGKVSLEIKIDTDDDKIICFIVKDTGIGIPLEKQPLVFEAF 694

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q   + K    G GLGL I++ +     G+ ++ SK+ EG      LP 
Sbjct: 695 QQADGSTKRKYGGTGLGLSISRELAKLLRGEIVLHSKVNEGSSFTLCLPV 744


>gi|330989290|gb|EGH87393.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 998

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 675 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 734

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 735 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 790

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT +G  ++ +    +     
Sbjct: 791 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 850

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 851 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 910

Query: 459 RSKLREGVEVIAIL 472
            S   +G  +   L
Sbjct: 911 DSVPGQGTRISMNL 924


>gi|167767697|ref|ZP_02439750.1| hypothetical protein CLOSS21_02232 [Clostridium sp. SS2/1]
 gi|317499121|ref|ZP_07957399.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710714|gb|EDS21293.1| hypothetical protein CLOSS21_02232 [Clostridium sp. SS2/1]
 gi|291560829|emb|CBL39629.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
 gi|316893590|gb|EFV15794.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 123/257 (47%), Gaps = 6/257 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +E   L+ ++E      +   K  +E    +  F A++SHEL+TPL  I G++E+++   
Sbjct: 197 SELTPLLDKIEKQNMDIERQIKEIKEAENMRKEFSANVSHELKTPLTTISGYAELMKDGL 256

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P +      +   I+   + L+++I  I+ LSR++  R EL    + L ++       
Sbjct: 257 VKPEDMP---RFSATIYDEARRLISMIEGIIKLSRLDENRVELDWKDVDLYELAFSIKND 313

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           L+ R++E+N+ I  +   +   +    + + ++  N+  NA+K+   GG V  T+     
Sbjct: 314 LKRRSEEENVAIHIRGIHT--KIRGVTQILYEMFFNVCENAIKYNHPGGEVVFTISKMGD 371

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D G GI + +I  +   F +   +  + ++G GLGL I +     H  +  +
Sbjct: 372 YPTVI-VEDTGIGIPKEDIDRIFERFYRVDKSHSNQKEGSGLGLSIVKHGAKFHHAEMEV 430

Query: 459 RSKLREGVEVIAILPNT 475
            S++ +G ++  + P  
Sbjct: 431 ESEVGKGTKITVVFPRQ 447


>gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 714

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 30/261 (11%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           RK  E     K  F++ +SHELRTPL +I G  +++    +G L+++  +  +    ++ 
Sbjct: 450 RKALE---RIKDEFISVVSHELRTPLTSIHGSIKLLATGQLGDLSDDGQQ-MLDIADQNT 505

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ L++++LDL RIE+G+ ++S+      D++      ++  A    + +     P L
Sbjct: 506 DRLVRLVSDVLDLQRIESGQAKISKHLCDAADLMTHATDAMRSMAYHHQVTLKST--PLL 563

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------------- 399
           + VWA+   M Q + NL+SNA+KF+  GG V +                           
Sbjct: 564 TMVWANPDYMVQTLTNLISNAIKFSQPGGTVELAAELRIEERRAKDSSSPPESHDTPFPI 623

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  +  + D G GI   ++ +V   F Q   +    + G GLGL I + I+  HGG
Sbjct: 624 TIKHTELWFQVIDQGQGIPADKLESVFERFQQVDASDAREKGGTGLGLAICRKIVEQHGG 683

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +    S L +G      LP +
Sbjct: 684 KIWAESVLGQGSCFFVALPMS 704


>gi|295400530|ref|ZP_06810508.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977433|gb|EFG53033.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 458

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    + +F+A  SHELRTPL+ IL   E +E+E      NE  ++ +  +    + + 
Sbjct: 224 QEAYHRQRQFVADASHELRTPLSVILSSVEALEMEEELTK-NELTQKLLDRLREEIKRMT 282

Query: 303 NLINEILDLSRIEAGR--YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            L+N++L L+R ++     +L +            + +L+  A +KNI +     P    
Sbjct: 283 KLMNDLLTLARADSAHASLQLVKETFDFRPHAERTLRLLEELASKKNIRMHFH-SPESVI 341

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEI 417
           + AD   + Q++  LL NA+K+T  GG V +++G    + Q I   S+KD G GI    +
Sbjct: 342 IAADADKLTQLLYILLDNAIKYTPDGGEVTLSIGIAPFKQQRILTISVKDTGIGIPPESL 401

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F +   A    + G GLGL IA+ I+  HGG   ++S++ +G E I  +P
Sbjct: 402 DRIFDRFYRVDKARSRQQGGHGLGLSIAKWIVDAHGGTIHVQSEVGKGSEFIVKIP 457


>gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
 gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus]
 gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
          Length = 454

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 4/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP+ AI G++E ++   +   +     + +  IHR  + 
Sbjct: 216 ELRRLEKVRKDFVANVSHELRTPITAIRGYAETLQGGAL--NDPVMAPKMVEIIHRQSER 273

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++L+LSR+E+    L  + ++L D        ++ +A  K   +   +   L +
Sbjct: 274 LSELVEDLLELSRLESREVSLKLARVTLADAAARAADTVRPKAGGKGQVVSLHVPQDLLA 333

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D + + QV+LNLL NAVK+T  GGRV V  G        + +KD G GI       +
Sbjct: 334 V-GDPRAVEQVLLNLLDNAVKYTPAGGRVDV-YGEYEQGRCVVRVKDTGVGIEAKHQSRI 391

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +          G GLGL I + ++    G+  + S+   G      LP  
Sbjct: 392 FERFYRVDKGRSRDMGGTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFTIFLPLA 446


>gi|326565978|gb|EGE16139.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           103P14B1]
 gi|326575373|gb|EGE25298.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           101P30B1]
          Length = 988

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SF QG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFSQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 873

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 8/237 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++AE EN AKS FLA MSHE+RTP+N +LG +  +    +    +   ++ +  I  SG 
Sbjct: 363 EQAEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL----DAEQQQAVTTIRDSGD 418

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL ++N+ILDLS++EAGR E  ++  S   +V     +++   + K IE+   IDP L 
Sbjct: 419 DLLRILNDILDLSKLEAGRLEFEQADFSPATLVESVRAIIEPEIRGKGIELKIDIDPRLP 478

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEG 415
             +  D   +RQV+LNL SNAVKFT  G   + +T    +     +   + D G GI+  
Sbjct: 479 PSLSGDAARIRQVLLNLASNAVKFTERGSIAIVLTCVKRNDSHATVEWQVTDTGIGISPD 538

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + ++ T F Q  ++I     G GLGL I++ I+   GG   + S+  EG      L
Sbjct: 539 RVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGEGSTFRFSL 595



 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQN----PIFPMWSLITLAVYAANLSLG 90
           R I    ++S+ R++P+     L  A++  +        P    W  + + V A+ +   
Sbjct: 46  RRIRAAQIDSVTRLTPVTMSVNLANASLILFTFWGSEARPQLLAWMAMIVFVAASAVRAW 105

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +   S+ ++         + +  + +GL W  + ++   T  P    I       + +S
Sbjct: 106 LR-TRSEPRLEASARAIRRMTLHALLLGLIWGAMPVMVFVTAEPGDQLIAACVAAGM-IS 163

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
             A +   +P A     + +    +    +         A  L     F +       + 
Sbjct: 164 GGAFTLSTVPRAGLAYTWALTAGSALSLALCEGTAYRITAAFLLLYGVFMSRNLVSHGEM 223

Query: 211 NVKILSCQAEKDD 223
               L  + E + 
Sbjct: 224 FFDNLRAKFELER 236


>gi|285018130|ref|YP_003375841.1| regulation of pathogenicity factor rpfc protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473348|emb|CBA15853.1| probable regulation of pathogenicity factor rpfc protein
           [Xanthomonas albilineans]
          Length = 725

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 161/384 (41%), Gaps = 16/384 (4%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           +   + + +C     L  P       +    +   LIA ++  +         ++    +
Sbjct: 57  VASGLVLSVCIVAWLLWRPERCDVRRVVGMTADYGLIAAAMMGMG----EPLAWMYVVVM 112

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            V +          L +++A    +  +      Y      + I          +   E+
Sbjct: 113 WVTVGNGLRYGNRYLYLAVAMGAVSFGATILVTPYWRHNIGLGIGLLIGLFAVPLYLSEL 172

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +       K A+  N AKSRFLA+MSHE RTPLN + G +EV+    +    +   +E 
Sbjct: 173 LQQ-LTRATKEAQRANEAKSRFLANMSHEFRTPLNGLSGMTEVLATTRL----DAEQREC 227

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  S + LL L+ E+LD+S IEAG+  L++   SL + +    ++LQ +A+ +N+  
Sbjct: 228 LNTIQASARSLLALVEEVLDISAIEAGKLRLNKRDFSLRETLEGISLILQPQARVRNLAY 287

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYISI 405
             ++ P +  S+  D   +RQV+LNL  NA+KFT IG   + V +              I
Sbjct: 288 HVEVAPDVPDSLHGDPGHLRQVLLNLAGNAIKFTEIGKVDIRVRLHRNELGQPTCLGFDI 347

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+A      +  +F Q  + +    +G GLG  IA+ ++   GG    + +  +G
Sbjct: 348 LDTGIGVAPEMRTRLFDAFEQADVGLTRRYEGSGLGTTIAKGLVEAMGGSIGYQERAPQG 407

Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489
                 LP   V   +P      T
Sbjct: 408 SHFWFELPF--VAASVPTQTAAET 429


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1307

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 7/262 (2%)

Query: 215  LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +  + + +    E E     +++ R+ AE  N AK  FLA + HELR PL  I+    ++
Sbjct: 903  VRARKKLEAAAREREELLRRAEDARRDAERANRAKDEFLAMLGHELRNPLAPIVTALHLM 962

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             L   G    E        I R  +HL  L++++LD+SRI  G+ EL +  I + D+V +
Sbjct: 963  RLRAGGHAERERL-----VIERQIKHLTALVDDLLDVSRITRGKVELKKQRIEIADVVAK 1017

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             + +     +++   +   +  S  +V  D   + QV+ NLL+NA K+T  GG + V  G
Sbjct: 1018 AVELASPLLEQRRHHLTVTVPSSGLAVEGDVTRLAQVVSNLLTNAAKYTESGGEIAVRAG 1077

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    +S++DNG GIA   +P+V   F Q   A+  ++ G+GLGL I  +++A HGG
Sbjct: 1078 RV-EGEVALSVRDNGIGIAPEMLPSVFERFVQERQALDRSQGGLGLGLAIVHNLIAMHGG 1136

Query: 455  QFLIRSK-LREGVEVIAILPNT 475
            +    S+    G E    LP  
Sbjct: 1137 RVSAHSEGRGRGSEFTIRLPAA 1158



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 8/237 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK+ F +++SHE RTPL  +LG  E    + +         E++   +R+   LL L+N 
Sbjct: 371 AKTLFFSNVSHEFRTPLTLMLGPME----DALASPERALCGEHLSLAYRNALRLLKLVNA 426

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LD SR+E GR + S     L  +  +     +   +   +            V+ D   
Sbjct: 427 LLDFSRLEMGRAQASYDPTDLAGLTVDLASAFRSAIERAGLAFKVDCPELPEPVFVDRDM 486

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             +++LNLLSNA+KFT   G + + +     +   + ++D G GI E E+P +   F + 
Sbjct: 487 WEKIVLNLLSNALKFTFD-GEILLLLRAREDQ-VELVVRDTGTGIPEHELPHLFERFHRV 544

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
             A     +G G+GL +   ++  HGG     S+L EG      +P  R    +P +
Sbjct: 545 QGARARTHEGSGIGLALVHELVRLHGGSIRAESRLGEGTAFTIAIP--RGSAHLPAE 599


>gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
 gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
          Length = 614

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E   +++         ++
Sbjct: 372 EKIENERKEFVSNVSHELRTPLTSMRSYLEALLDGAW--KDPEIAPQFLEVTQEETDRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE-----IFQKIDPS 357
            +I ++L+LSR+++ +  L    +++ ++    I   ++  Q  +       I ++   S
Sbjct: 430 RMIKDLLELSRMDSNKSVLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKS 489

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   M QV+ N+++NA+K++  GG +   +  T       SI D G GI + ++
Sbjct: 490 QLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGLVET-NTSVIFSISDEGLGIPKRDL 548

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             V   F +   A   +  G GLGL I++ ++  H G+    S   +G      LP
Sbjct: 549 ANVFDRFFRVDKARARSMGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604


>gi|73748817|ref|YP_308056.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|147669578|ref|YP_001214396.1| integral membrane sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|73660533|emb|CAI83140.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|146270526|gb|ABQ17518.1| integral membrane sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 473

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +     +     LS + + +      E+A+S +   +   E    ++ R LA ++HELR
Sbjct: 201 ILNRSARQIASGKLSQRVKVNSRDELGELAESFNHMAKN-LENNEQSRQRLLADIAHELR 259

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  I G  + +               ++  I      L  LI ++ D+S  E+G+ +L
Sbjct: 260 TPLTVIEGTVDGMLDGVFAADT-----HHLTTIKEESATLTRLIKDLRDISLAESGKLKL 314

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             + + + DIV+       + A++K+I +   I    S++  D   + Q+  NLLSNA++
Sbjct: 315 EMAQVDIADIVQRQARQASILAKDKSISLITDISSGSSAITGDAIRLNQITSNLLSNALR 374

Query: 382 FTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            T  GG++ +++    +    G  +S+ D G GI   ++P +   F + + +   +E G 
Sbjct: 375 HTPTGGQITLSLKNMLYQGKPGVMVSVADTGEGIPPADLPHIFDRFYRVTTSRARSEGGS 434

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           GLGL I + +   HGG     S L +G      LP +R
Sbjct: 435 GLGLAIVKEMTEAHGGYVWAESTLGKGSTFNYWLPVSR 472


>gi|229139865|ref|ZP_04268430.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
 gi|228643530|gb|EEK99796.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
          Length = 448

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|222096717|ref|YP_002530774.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221240775|gb|ACM13485.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 458

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|217960662|ref|YP_002339226.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|217064570|gb|ACJ78820.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 458

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|82751086|ref|YP_416827.1| respiratory response protein B [Staphylococcus aureus RF122]
 gi|82656617|emb|CAI81041.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus RF122]
          Length = 583

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWRY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCAENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|115361278|ref|YP_778415.1| histidine kinase [Burkholderia ambifaria AMMD]
 gi|115286606|gb|ABI92081.1| histidine kinase [Burkholderia ambifaria AMMD]
          Length = 742

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 11/268 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L  E R      N AK +FLA + HELR PL  I  
Sbjct: 328 SAVEVTEHVAAREKLVAANAERDRLLGELRD----ANQAKDQFLAVLGHELRNPLTPISL 383

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     I  I R   H++ LI+++LD+SRI  G+  L + ++ L 
Sbjct: 384 ALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRLA 438

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +    DP  +    D   + QV+ NLL+NA K+T  GG +
Sbjct: 439 DIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKYTMPGGDI 497

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V           I + DNG GI    + ++   F +     K A  G+G+GL + +S++
Sbjct: 498 TVRATHGVDGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGLALVRSLV 557

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476
             HGG     S     G      LP  R
Sbjct: 558 NLHGGTVRADSAGPGCGSTFTIALPEYR 585


>gi|241888981|ref|ZP_04776285.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
 gi|241864230|gb|EER68608.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
          Length = 642

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E +   +  F++++SHELRTPL  +  + E +E   +   + E   ++I  IH+    ++
Sbjct: 406 ERQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVL--EDKELAPQFIDTIHKETTRMI 463

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++NE++ L +++       +  I +  ++ +      L   EKN    + I  S   V 
Sbjct: 464 RMVNELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKHIPKSPIFVE 521

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV  N+++NA+K++  G  + V V          ISIKD G GI    I  + 
Sbjct: 522 GDQDKLTQVFDNIVNNAIKYSPNGKNITVRVRQNYHHNRVSISIKDEGVGIPLVHIDKIF 581

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   + + +  G GLGL +A++I+  H G+   +S+   G  +   LP  ++ + 
Sbjct: 582 NRFYRVDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLPCEQIDDE 640


>gi|229163665|ref|ZP_04291613.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
 gi|228619802|gb|EEK76680.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
          Length = 484

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IEI  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEIHLQLHASPQYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
 gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
          Length = 2299

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 140/319 (43%), Gaps = 21/319 (6%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                +   + L     +       +   + + +    +    +   +A+   A+  + E 
Sbjct: 1741 FTERNTQVLRLLVNQISISLANALLFKEIERVSASNEAMLEMQKRALAQARAAEIKAKEA 1800

Query: 239  RKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               A       EE   AKS FLA++SHELRTPLN ++G SE+++   +    N     Y 
Sbjct: 1801 EAIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASIL----NSEQTGYA 1856

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I      LL++IN++LD S++EAG+  + E  +SL + + E +  L     E+ ++  
Sbjct: 1857 DSIRVCADTLLSIINDLLDYSKLEAGKMSVMEMPLSLTETITEVVRALAYTNAERGLKTV 1916

Query: 352  QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIK 406
            ++++ +    V  D   + Q+++NLLSN+ KFT   G V V         +Y    IS+ 
Sbjct: 1917 EQLELNPEMMVMGDPVRLHQILMNLLSNSYKFTPK-GSVTVRAVIDQETDEYADVTISVI 1975

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSK---L 462
            D G GI   +   +   F Q   +   +  G GLGL I ++++ N   G+  + S+    
Sbjct: 1976 DTGIGIPAEQKKKLFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKVWLDSRDSGP 2035

Query: 463  REGVEVIAILPNTRVLNFI 481
              G  V   L   +V    
Sbjct: 2036 DRGTTVSFSLRFRKVAKTS 2054


>gi|161521238|ref|YP_001584665.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|160345288|gb|ABX18373.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
          Length = 1214

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 4/290 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I +L+ A   +   +  AE  N AK  FLA 
Sbjct: 790  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLAL 849

Query: 256  MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR PLN I  ++ V+    E   P + +  +  +  I R  Q    LI+++LD+SR
Sbjct: 850  VSHELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSR 909

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L    +     VR  +   +  A +K I +      S + V  D + ++QV  
Sbjct: 910  ISSGRFSLDSKPVDFAAAVRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVAS 969

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NL+ NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q   +   
Sbjct: 970  NLIGNALKFTPQGGRVEVALTRL-GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTR 1028

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIP 482
               G+GLGL I + ++  HGG     S+    G  +   +P  +     P
Sbjct: 1029 QYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVRIPLLQTAATEP 1078


>gi|117168610|gb|ABK32275.1| Amb7 [Sorangium cellulosum]
          Length = 2087

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 128/282 (45%), Gaps = 16/282 (5%)

Query: 207  LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
            L +    +     E +    E+E A+   +E  ++    +  KS FLA+MSHELRTPLN+
Sbjct: 1363 LGEKARLLAQQNVEVERKNREVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNS 1422

Query: 267  ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
            +L  S+ +       L      E+   IH SG  LL LIN+ILDLS+IE+G   +    +
Sbjct: 1423 LLILSDQLSKNNDRNLTG-RQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGEL 1481

Query: 327  SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385
            S  D+        +  A+ K +E       +L  V + D K ++QV+ NLLSN+ KFT  
Sbjct: 1482 SFSDLQDYVERTFRHVAESKKLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTER 1541

Query: 386  GGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             G V + V   +                  +S++D G GI   +   +  +F Q   +  
Sbjct: 1542 -GSVALDVDLVTSGWAPENEGLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTS 1600

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                G GLGL I++ I    GG+  + SK   G      LP 
Sbjct: 1601 RKYGGTGLGLAISREIAWMLGGEIKLSSKPGSGSSFTLYLPL 1642


>gi|157960115|ref|YP_001500149.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157845115|gb|ABV85614.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 885

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/338 (30%), Positives = 170/338 (50%), Gaps = 13/338 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           ML +   L    ++  +         +  +S      + +      +  + +S    LS 
Sbjct: 292 MLFFGALLGSLIIIATIGANLY-RRIINYLSHVIKTMSQIEETHDYSKKINESGGDELSL 350

Query: 218 QAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + K ++LI E  +        +  AE+ N AKS FLA+MSHE+RTPLN I+G S+++  
Sbjct: 351 FSNKLNNLINERHLNDKKILRAKLEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAD 410

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +  + NE    Y+  I  S Q LL LIN+ILDLS+IE+G   +  +   + ++V + +
Sbjct: 411 TKLTAIQNE----YLQTIETSSQTLLLLINDILDLSKIESGNLSIINTDTDISEVVYDTL 466

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394
            M+  +  EK++ +  +ID     + + DE  MRQV++NLLSNAVKFT  GG RV V+  
Sbjct: 467 TMILAKVTEKSLTLAVEIDSDTPYLISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSK 526

Query: 395 WTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
            T+      ISI D+G GIA+ +   + + F Q          G GLGL I + ++   G
Sbjct: 527 NTADYCDMIISIYDSGIGIAKEKQQYIFSPFTQEDDTTTREFGGTGLGLAICKQLVELMG 586

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
           G+  I S   +G      L  ++++    ++  +STQ+
Sbjct: 587 GEISINSVKGQGCCFSIKL-RSQIIA---KEKPKSTQF 620


>gi|294665317|ref|ZP_06730609.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604910|gb|EFF48269.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 290

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 130/276 (47%), Gaps = 9/276 (3%)

Query: 213 KILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++ S + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE RTPL 
Sbjct: 14  ELESLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFRTPLG 73

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S   
Sbjct: 74  SILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITISPGW 132

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L+D+      M +      +  +  +  P L  ++ D+K + Q++ N +SNA+KFT  
Sbjct: 133 FDLMDLFAALRGMFRPLTDVGSTTLIFEDPPVLPMLYTDDKKLAQILRNFISNALKFTPQ 192

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V V             ++D G GI       +   F Q    ++    G GLGL I 
Sbjct: 193 -GQVRVFAQLEGDSHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLGLSIC 251

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +      GG+  I S + +G E   +LP T      
Sbjct: 252 KRFAELLGGRVGINSVVGQGSEFYVVLPVTLAAEET 287


>gi|323487713|ref|ZP_08092971.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323398447|gb|EGA91235.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 608

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ +  F+A++SHELRTPL  +  + E +        + +    ++       + ++
Sbjct: 372 EKIDIERREFVANVSHELRTPLTTMRSYLEALADGAW--QDPDLAPNFLNVTQTETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS++++   ELS+  +         I   +  ++   +   +++      V 
Sbjct: 430 RLVNDLLKLSKMDSSETELSKEMVEFNVFFNRIIDRFE-MSKSHKVNFMRQLPKEQYFVE 488

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N++SNA+K++  GG+V   +         I I D G GI +  +  +  
Sbjct: 489 IDPDKLTQVIDNIISNALKYSPEGGKVRFNMT-VEEGYLLIQISDEGMGIPKENVDRIFD 547

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A      G GLGL I++ ++  HGG     SKL +G  +   LP   
Sbjct: 548 RFYRVDRARSREMGGTGLGLAISKEMINAHGGVIWAESKLGKGTSIFFTLPFEE 601


>gi|317055666|ref|YP_004104133.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
 gi|315447935|gb|ADU21499.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
          Length = 1205

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEK----DDLIAELEVAK--SLSDETRKRAEEENLAKSRFL 253
              +    +   ++ L  + E       LI + E         E    A++ N AKS FL
Sbjct: 286 VITMGERKYTPCIEALEYEGENFGRLYRLIDDTEHYNYMEQLREQSLIADKANRAKSAFL 345

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+MSHE+RTP+NA+LG  E+I  E+           Y  DI  +G+ LL+LIN+ILD S+
Sbjct: 346 ANMSHEIRTPINAVLGMDEMILRESG----ERQIIGYAEDIRNAGRTLLSLINDILDFSK 401

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVI 372
           +E GR EL  +   L   + + + M++ RA +K +    K+D  +  +   DE  ++Q  
Sbjct: 402 VEQGRMELIPTQYELGSAINDLVNMIRPRADKKGLRFDVKVDSGIPHMLVGDEIRVKQCA 461

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           LNLL+NAVK+T   G VH  VG+            ++ D G GI +  +  + + F +  
Sbjct: 462 LNLLTNAVKYTEK-GSVHFEVGYEKTGDKSIKLRFTVSDTGMGIKQENMDKLFSPFSRIE 520

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
                + +G GLG+ I + ++   G +  I S   +G     
Sbjct: 521 EGKNRSIEGTGLGMSITRQLLELMGSELEINSIYGKGSVFSF 562


>gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1046

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 24/297 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 296 LRVANEELEEQSRSLQQSQSDLEQQQAELEQTNVQLEERTQALEAQKQALLVAQGQLVRN 355

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++       L  E  K Y   IH S 
Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVK-YAQAIHSSN 414

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  ELS+  +++  +V+      +  A++K +++    D + 
Sbjct: 415 NDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLEISADAAA 474

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            + +  D + ++Q++ NLL+NA+KFT   G+V + V           + D G GIA  + 
Sbjct: 475 PTQLVVDNQRLQQILKNLLANAIKFT-EHGQVSLAVQSHGNGRVRFVVCDTGIGIAREQS 533

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP 
Sbjct: 534 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDSEPGRGSCFTLELPV 590


>gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
 gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
          Length = 460

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 8/237 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             +R E     +S F+A+ SHEL+TPL AI GF E++E + +     +  K Y+G I + 
Sbjct: 230 AVRRTE---QIRSEFVANASHELKTPLTAIKGFVELMEADIITE--PDQIKSYLGRIRKE 284

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + ++ LIN+IL LS +E+   +   +A+S+    +     + L A ++N+ +    +  
Sbjct: 285 TERMIELINDILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQV--EGD 342

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           + +V A+   M Q+ LNL+ NAVK+    G V VT+  +     +  + D G GI     
Sbjct: 343 VGTVRANPDRMMQLALNLIDNAVKYNKPDGNVRVTI-ISKDGNVHFCVNDTGVGIPPEAR 401

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             V   F +        + G GLGL I + I+  + G+  I S + EG  +  ILP 
Sbjct: 402 QRVFERFYRVDKGRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILPA 458


>gi|189352589|ref|YP_001948216.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
 gi|189336611|dbj|BAG45680.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
          Length = 1218

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 4/290 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I +L+ A   +   +  AE  N AK  FLA 
Sbjct: 794  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLAL 853

Query: 256  MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR PLN I  ++ V+    E   P + +  +  +  I R  Q    LI+++LD+SR
Sbjct: 854  VSHELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSR 913

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L    +     VR  +   +  A +K I +      S + V  D + ++QV  
Sbjct: 914  ISSGRFSLDSKPVDFAAAVRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVAS 973

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NL+ NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q   +   
Sbjct: 974  NLIGNALKFTPQGGRVEVALTRL-GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTR 1032

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIP 482
               G+GLGL I + ++  HGG     S+    G  +   +P  +     P
Sbjct: 1033 QYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVRIPLLQTAATEP 1082


>gi|294627017|ref|ZP_06705607.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598679|gb|EFF42826.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 290

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 9/276 (3%)

Query: 213 KILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++ S + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE RTPL 
Sbjct: 14  ELESLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFRTPLG 73

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S   
Sbjct: 74  SILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITISPGW 132

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L+D+      M +      +  +  +  P L  ++ D+K + Q++ N +SNA+KFT  
Sbjct: 133 FDLMDLFAALRGMFRPLTDVGSTTLIFEDPPVLPMLYTDDKKLAQILRNFISNALKFTPQ 192

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V V             ++D G GI       +   F Q    ++    G GLGL I 
Sbjct: 193 -GQVRVFAQLEGDSHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLGLSIC 251

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +      GG+  I S + +G E   +LP T     I
Sbjct: 252 KRFAELLGGRVGINSVVGQGSEFYVVLPVTLAAEEI 287


>gi|291287635|ref|YP_003504451.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884795|gb|ADD68495.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1067

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 21/352 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS----LAGM 192
             I   +  L A+++ ++    L ++        + A+  +  + +  + I     +A +
Sbjct: 298 QVIIIFSYALAAVALLSVILIKLIFSPLDKITNHITAVQKETDIPIKPVIIKGKSEIATL 357

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-------EEE 245
            A        +     + N ++   Q     L   +       + T  R        +  
Sbjct: 358 AAAFNLMNVKLAESFERINTQMHQIQEINTSLERRVSERTQQLELTNTRLKNAMGEIQFA 417

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLASMSHE+RTP+NA+LG S ++    +         +YI  I  S   LL ++
Sbjct: 418 NEAKSEFLASMSHEIRTPMNAVLGLSYLMMQTELTG----KQYDYISKIRSSANLLLEIV 473

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N++LD S+IEAG+ EL    ++L D ++    ++++   +KN+ +  +ID ++   +  D
Sbjct: 474 NDVLDFSKIEAGKLELETDVMNLKDNIKRIAGIIEVTVSKKNVSVQLEIDENIPDYLVGD 533

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420
              + QV+ NL +NA KFT   G + ++    +         I++ D G GI   +IP +
Sbjct: 534 SLRITQVLNNLATNAAKFTEQ-GHIEISAFLLTKNKNYAKIRITVSDTGIGIPTDKIPIL 592

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             SF Q     +  + G GLGL I++ I+        + SK  EG     IL
Sbjct: 593 FDSFTQVKRKNQKKQSGSGLGLSISKKILNAMESDITVESKEGEGSVFTFIL 644


>gi|239625343|ref|ZP_04668374.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519573|gb|EEQ59439.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 946

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 10/269 (3%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I +  +  ++     ++AE ++ AK  FL+ MSHE+RTP+NAI+G + +     M    
Sbjct: 545 FIMKARLKNAMIQGELEKAEAQSRAKGEFLSRMSHEIRTPMNAIMGLANL---TCMEERL 601

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  +  +  I  S Q+LL+LIN+ILD+SRIE G+ E+ + + +L  ++ +   M++ +A
Sbjct: 602 PERVETNLKKILSSSQYLLSLINDILDMSRIENGKMEIMDESFNLRHLLSDLEGMMRSQA 661

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           + K I     +    S +  D   +RQV++NLLSNAVKFT   G+V + V  T       
Sbjct: 662 ESKGILFTVDLGIIHSDIQGDPVRLRQVLVNLLSNAVKFTPENGQVKLLVQETESDETKA 721

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+KDNG GI E     +  SF Q   +  +   G GLGLPI+ +I+   GG+  +R
Sbjct: 722 AFLFSVKDNGIGIEEEYQKKIFDSFEQIGSS-SAKSAGTGLGLPISSNIVNAMGGELKVR 780

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S   +G E          L+  PED   S
Sbjct: 781 SSPHKGAEFYFH--VVFQLSASPEDPAPS 807


>gi|294666715|ref|ZP_06731951.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603540|gb|EFF46955.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 726

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYHHTHGDTLMATWLILVGELVVSL 64

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +++     G    +          P          + I  
Sbjct: 65  GLMVAILLRPQVSHTRRLIGMVLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 117

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   S ++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 118 GLRYGSPYLRAATAMASLSFLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 177

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 178 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 209

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 210 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 265

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           D++    ++LQ +A+ + ++   ++   +  +   D   +RQV+LNLL NAVKFT   G 
Sbjct: 266 DLIGSVNMILQPQAKTRGLDYGTEVATDVPDLLKGDTGHLRQVLLNLLGNAVKFT-EHGH 324

Query: 389 VHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG G         ++D+G G+     P +  +F Q  + +    +G GLG  
Sbjct: 325 VLLRVARLSGNGADTVRLRFDVEDSGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 384

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG          G      LP  
Sbjct: 385 IAKGLVEAMGGAIGFAPNPSGGSVFWFELPLE 416


>gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 420

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+ A+ L    ++ +      KS F+A+MSHE+RTPLNAI+GFS ++    +     
Sbjct: 169 VTELKNAQRLLAIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASGE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +         D++RE   + + +  
Sbjct: 225 EERKMYADIIAENNERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       ++++ + + QV+ NLL NA+KFTA  G +            Y  
Sbjct: 285 NSPVELICEAHVQPIMMYSERERIIQVLSNLLHNAMKFTAS-GEIRFGCRLEGMEEVYFF 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +   + + F +         QG GLGL ++Q+I+ N GG   + SK+  
Sbjct: 344 VSDTGIGIPEEDQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSKVNR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|228934496|ref|ZP_04097331.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825133|gb|EEM70930.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 448

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNQGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1168

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 10/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++    +      ++ AE  + AKSRFLA+MSHE+R+PLNA+LG  E++    +   
Sbjct: 478 HDISKRMEYELQLKNAKEEAESGSKAKSRFLATMSHEIRSPLNAVLGSVELLLDSML--- 534

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+  + Y      +G  LL+ IN+ILD S+IEAG+  L   + S   +V + + +L  +
Sbjct: 535 -NKEQRLYAQTAREAGTALLSTINDILDFSKIEAGQMALETESFSPAKLVSQVMQILAPK 593

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A EK + +   I+ ++  +   D + +RQV+ NL+ NA+KF+   G + V +       Q
Sbjct: 594 AAEKGVNLATFINRNVPEIVKGDAQRLRQVLHNLVDNAIKFSDS-GCISVEMWIPDSHHQ 652

Query: 402 YI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +    ++ D G G++      +   F Q      ++ +G GLGL I   ++   GG+  
Sbjct: 653 EVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQHNTSYKGTGLGLAICSELITMMGGKIE 712

Query: 458 IRSKLREGVEVIA 470
           + S+L  G     
Sbjct: 713 LSSRLGHGSCFRF 725


>gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1068

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 24/296 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 307 LRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQKQALLIAQNQLVRN 366

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 367 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVK-YAQAILSSN 425

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  +    +++      +  A++K + +        
Sbjct: 426 NDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLARQKGLALEITAAAGA 485

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D + ++Q++ NLL+NA+KFT   G+V +TV   +      ++ D G GIA  + 
Sbjct: 486 PAQLVVDNQRLQQILKNLLANAIKFT-EHGKVGLTVQAHAPGRVRFAVTDTGIGIAREQS 544

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP
Sbjct: 545 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELP 600


>gi|290511586|ref|ZP_06550955.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
 gi|289776579|gb|EFD84578.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
          Length = 784

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 278 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 333

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 334 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 393

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 394 PHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 453

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 454 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 513

Query: 474 -NTRVLNFIPEDN 485
               V + + ED+
Sbjct: 514 IAEEVEDTLAEDD 526


>gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 838

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 163/413 (39%), Gaps = 40/413 (9%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
                  A  +S   + +    +  +  +     ++  +A GL                 
Sbjct: 224 GSMAGQLALLVSDLTRAVADTTRELKDSLAHTRAIIDNLADGLL--------VLDARGRA 275

Query: 137 LTIYKSATLLIAL--SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
                +   +  L  +  A       +   ++      A S +         +  A +  
Sbjct: 276 SLFNPALLAMFGLTEAEVAGRAASRAFPPAMAALAASAAASGRCGPVGEEGHVQAAEVRL 335

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                   +   +  +            D+  E EV               +  K+ F++
Sbjct: 336 AGGGTGKAVATRVRLAGEDREGTIILVRDITVEKEV---------------DRMKTEFIS 380

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNN-------------ETYKEYIGDIHRSGQHL 301
           ++SHELRTPL ++LGF+++I  +    +               +  +E +  I   G+ L
Sbjct: 381 TVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTWRGAQQIRENLDIIVAEGERL 440

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++LD++++E+GR E + +A+SL ++    +      A  K + +  ++ P+L  V
Sbjct: 441 TELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATPLAARKGLVLANQVPPTLPLV 500

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QV LNL+ NAVKFTA  GRV V      G    ++++D GPGIA G++  + 
Sbjct: 501 LGDRDRLVQVFLNLIGNAVKFTAT-GRVDVEAAL-DGPEILVTVRDTGPGIAAGDLERIF 558

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             F Q    +    +G GLGLPI + I+  HGG+    S+   G      LP 
Sbjct: 559 EKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESEGGAGSAFRFTLPA 611


>gi|283457123|ref|YP_003361687.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
 gi|283133102|dbj|BAI63867.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
          Length = 554

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 141/328 (42%), Gaps = 18/328 (5%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE- 220
               S   +V A    + +    +                 +  H   S V++    ++ 
Sbjct: 236 VSLGSIAVMVGAGVAGSYIIRGTMKPLERVSAVATDVAHLDLEEHTISSAVRVDPRDSDP 295

Query: 221 KDDLIAELEVAKSLSD------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + ++ A       L D      E R+R E +  A   F+A  SHELRTPL AI G+S+++
Sbjct: 296 RTEVGAVGYALNQLLDNVNSALEVRERTEHQIRA---FIADASHELRTPLAAIKGYSDML 352

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                    +E+ +  +  I    + +  L+ ++L L+R++ GR E     + L ++V E
Sbjct: 353 R---WTEPLSESGQSSLARIDSQTERMSRLVEDLLTLARLDEGR-EPKLEQVDLTELVLE 408

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           C   +Q  A+     +          V AD   +++VILNLLSNA K T  G RV   + 
Sbjct: 409 CTSDMQAAARTHEWHLNL--PDEPVEVVADRSQIQRVILNLLSNARKHTDEGTRVTAGLS 466

Query: 395 WTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             + R    +++ DNGPGIA   +P +   F +   A   ++   GLGL I Q+I+  HG
Sbjct: 467 VDAARREAVVTVADNGPGIAPDFLPKIFDRFTRADKARSGSDGTTGLGLAIVQAIVQAHG 526

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G   ++S+          LP    L  +
Sbjct: 527 GSIQVQSQPGH-TVFTVRLPLDARLQPV 553


>gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 814

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 15/271 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E ++ +   + TR+ AE+   A+  FLA++SHE+R P+N+I+G + ++    +    +
Sbjct: 295 ITEQKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDTYL----S 350

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   EY+  +  S   L  L++++LD+S+IE G+ E         ++ +      + R  
Sbjct: 351 EEQLEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKTFEFRLS 410

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
           ++ I+   ++ PS+     +D   + Q+++NL++NA KFT  G    ++    +      
Sbjct: 411 QRPIQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEG---TISCLAEAKFIDQQ 467

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +     +KD G GI    +P +   F Q   A K    G GLGLPI + ++   GG   +
Sbjct: 468 QWIEFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGNIKV 527

Query: 459 RSKLREGVEVIAILPNTRVLNFI--PEDNHE 487
           +S    G     +LP    L     P +  E
Sbjct: 528 QSTPGVGTTFNILLPIEPALEPSLHPSEKSE 558


>gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. TJI49]
          Length = 1219

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 4/281 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I  L+ A   +   R  AE  N AK  FL  
Sbjct: 795  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIDALKRALGTAQAARTEAERANTAKDNFLGL 854

Query: 256  MSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR PLN I G++ V+    E   P + +  +  +  I R  Q    LI+++LD+SR
Sbjct: 855  VSHELRAPLNVISGWAAVLATASERGMPADEQMSQRAVTTIMRHCQLQAELIDDLLDVSR 914

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L         IV+  +   +  A  K I +      + + V  D + ++QV  
Sbjct: 915  ISSGRFSLDTKPADFAAIVQTVVESNRPVAARKEISLATAGLNARAVVSGDARRLQQVAS 974

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NL+ NA+KFT  GGRV V +    G    +S+ DNG G++  ++P +   F Q   +   
Sbjct: 975  NLIGNALKFTPQGGRVEVALTRL-GTMLELSVTDNGIGVSAEQLPYLFDRFMQSDTSRTR 1033

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
               G+GLGL I + ++  HGG     S+    G  +   LP
Sbjct: 1034 NYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVRLP 1074


>gi|225018277|ref|ZP_03707469.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
 gi|224948974|gb|EEG30183.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
          Length = 1192

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   ++   +A+  D++ + +  K         AE+ N AKS FL+ MSHE+RTP+NA
Sbjct: 636 IDRDLERVCIARADVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNA 695

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S +         ++E  ++ I  I  S + LL+LIN+ILD+SRIE+G+  L    I
Sbjct: 696 IIGMSTIAAQSIG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKLLLKSDKI 752

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
            + + +     +   +A  K +E    +DP L   +  D   ++Q+++N+LSNA+KFT  
Sbjct: 753 PIEEFLSGISSICYAQAAAKGVEYECIVDPVLDDYYIGDTMKLQQILINILSNAIKFTGE 812

Query: 386 GGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG+V  +        +       I D G G++E  +P +   F Q S    +   G GLG
Sbjct: 813 GGKVTFSASQRRKTKNDAELRFIINDTGVGMSEEFLPHIFEPFSQESTGTTALYGGTGLG 872

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I+++I+    G+  +RS    G E   
Sbjct: 873 LAISKNIVDLMDGKITVRSIKGIGTEFTV 901


>gi|194291802|ref|YP_002007709.1| hybrid sensor histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193225706|emb|CAQ71652.1| putative hybrid sensor histidine kinase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 613

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 173/456 (37%), Gaps = 15/456 (3%)

Query: 31  MDFDR-EIITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85
             +D   ++   +  + +          L  +++A   T     P    W++  + V A 
Sbjct: 21  PRYDAPRLLAAQMNLIDQSFGCAMAGCSLAAIILAVGLTLNGHRPGALPWAVAMVLVCAV 80

Query: 86  NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
                 ++    +       +   +    + IG  W L+  +      P  +    S   
Sbjct: 81  AYFGRLRL-PGRLTEAGATRYAHGMTAMLVLIGALWGLVAWLYLDVRLPAVVICILSLIA 139

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            ++ +  A+ +  LP      F P +V +    + +  +  + +       L        
Sbjct: 140 GMSAAALAVFSACLP-VAIGFFVPAIVPVWIAFLATGDIEYLPMFLGTPLYLCVLLVFAR 198

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           +      + ++ + E  +LI++L    + ++  +  AEE + AKS FLAS SH+LR PL+
Sbjct: 199 NYAHVARQSIALRFENVELISQLREQTARAEAAQHAAEEASRAKSVFLASASHDLRQPLH 258

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+  F   +    +    +E  ++ +  I  S      ++N +LD S++EAG       A
Sbjct: 259 AMGLFLVSLGRTCL----DERQRQLLAHIEASSGAAREMLNSLLDFSKLEAGVITPRARA 314

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L  ++ +       +A+ +   +  +   +  ++  D   +  V+ NL+SNA+++T  
Sbjct: 315 FRLQPLLHKLENEFAPQAEARG--LVYRTRDTTVTLHGDPTLVELVLRNLISNAIRYTQQ 372

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG   +      G    I + D G GI   +   +   F Q     +   +G+GLGL I 
Sbjct: 373 GG--VLVACRKRGVRATIEVWDTGIGIPSAQHRDIFREFHQLDNPERDQRKGLGLGLAIV 430

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             +      +  + S+   G      +P T      
Sbjct: 431 DGLARTMRTRVTLASRPGRGSVFRFSMPQTLDAPEA 466


>gi|262382643|ref|ZP_06075780.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295521|gb|EEY83452.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1369

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 6/271 (2%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             Q  + +L  +++    L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E 
Sbjct: 807  YQLRQAELERKIQERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLER 866

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    +    KE +  I R+   L+  +NE+LDLS +  G          L   ++E  
Sbjct: 867  HSGSEESCGD-KETLRTISRNTNRLIRHVNELLDLSVLTRGVPSPHIVCADLSRFLKEIS 925

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                  A    I     I P +S  + D+  + QV+ NLLSNA K+T  GG V  +    
Sbjct: 926  ETFIPLADSYKIAFTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSALLE 985

Query: 397  ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               S     + I D+G GI    +P +   + +G        +  G+GL   + ++  H 
Sbjct: 986  QSSSDAVMTLRITDSGIGIPPESLPYIFDRYYKGESITFRRSESSGIGLAYTKELLELHK 1045

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  S+L +G      LP +      PE+
Sbjct: 1046 ATIQCESELGKGSVFTVALPISE--EAYPEE 1074


>gi|220907505|ref|YP_002482816.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864116|gb|ACL44455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 882

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 143/328 (43%), Gaps = 34/328 (10%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK- 240
             +L + L+       +    +T    +    I    AE          A    D  +  
Sbjct: 425 RSLLILPLSARNRQLGALTLALTDASQRFYNTIDLSLAEDLAY-----RAALALDNAQLY 479

Query: 241 -RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             A+E N  K  FLA +SHELR+PLN ILG+++++    +   +  T ++ I  I R+ +
Sbjct: 480 YHAQEANRIKDEFLAVLSHELRSPLNPILGWAKILLNRRV---DEPTTRQAISIIERNAK 536

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             + LI+++LD+SRI  G+  L+ + + L  ++   I  ++L A+ K I+I  +      
Sbjct: 537 IQIQLIDDLLDVSRILKGKLSLTITDVDLKAVITAAIETVRLAAEAKQIQIQTRFLAEEG 596

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------------------WTSG 398
            V  D   ++QVI NLLSNA+KFT  GGR+ V +                       ++ 
Sbjct: 597 LVRGDVGRLQQVIWNLLSNAIKFTPSGGRIEVRLESGAQGSEGLNPASPSQLFPVLESAS 656

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               IS+ D G GI    +P +   F Q   +      G+GLGL IA+ I+  HGG    
Sbjct: 657 PSIKISVIDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHIIELHGGTIAA 716

Query: 459 RSKLR--EGVEVIAILPNTRVLNFIPED 484
            S     +G      LP       +P +
Sbjct: 717 ES-PGEAKGATFTVHLPLMSRDYHLPSE 743


>gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1060

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 6/240 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHELRTPLNAILGFS+++  +         +++ +  I+RSG+HLL LIN++LD+
Sbjct: 606 FLANMSHELRTPLNAILGFSQILLSDR---TLAPQHRQTLEKINRSGEHLLGLINDVLDM 662

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           ++IEAGR  L ++   L  ++R+   ML++RA+ K + +   +  +L   V  DE  +RQ
Sbjct: 663 AKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRLVFDLAANLPVAVTTDEMKLRQ 722

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V++NLL N +KFT  G   + V+            + D G G+   E+  +   F Q   
Sbjct: 723 VLVNLLGNGIKFTKEGSVCLKVSYRAQEPPRLAFEVSDTGIGMTPQELKMLFQPFVQTDS 782

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + K   +G GLGL I++  +   GG   +RS   +G      +P         E+    T
Sbjct: 783 S-KKVSEGTGLGLAISRQFVQLMGGDIQVRSTKGKGSHFYFEVPIDLGDPRSLEEEKAQT 841


>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
           [Synechococcus sp. PCC 7002]
          Length = 1076

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTP+N I+G   ++             +E+      S + LL L+N+IL
Sbjct: 553 SMFLATMSHEIRTPMNGIIGMLNLLL---YSEGLTTEQQEHAHIALSSAESLLMLLNDIL 609

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGM 368
           D S++EAG+ +L      L         ++   AQEK + +   +      S+  D   +
Sbjct: 610 DFSKMEAGKLQLETVDFDLHQFFENFAKLMAFAAQEKGLNLIFDLRGLRHGSIQGDPGRL 669

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFG 425
           RQ++ NL+SNA+KFT   G V +         +     S+ D G GIA  ++  +   F 
Sbjct: 670 RQILTNLVSNAIKFTNQ-GEVMIRCQTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFT 728

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           Q          G GLGL I Q +    GG   + S   EG      L
Sbjct: 729 QLEAGTTRRYGGTGLGLAITQRLCQVMGGTIEVISTPGEGSCFTFTL 775


>gi|83590321|ref|YP_430330.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83573235|gb|ABC19787.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 459

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 12/316 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
           P    L F  + + ++        +       +   AL     I     + +   LS + 
Sbjct: 156 PLDRLLLFILIAIPMTLLVAAGGGIF------LARRALQPIDRIAAKARQISATDLSRRL 209

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           +      E+    +  DE   R +     + +F A  SHE RTPL  I   +E       
Sbjct: 210 DLPHGNDEVGHLVATLDEMLDRLDRAFQRQRQFTADASHEFRTPLAVIRSQAEAALQR-- 267

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              +   Y++ +  I    + + NL+ ++L L+R +    ++    + L ++V       
Sbjct: 268 -QHSPAEYRQALEIIRDQAEWMGNLVAKLLLLARSDDRMEQMEMEPLDLGELVEGVTAEF 326

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           Q  A EK + + +KI   +     D+  + Q++ NL+ NA+K+T   G V V++    GR
Sbjct: 327 QGMAAEKGLRLVKKIKEKVVV-RGDQTRLTQLLANLVDNAIKYTPE-GEVVVSLERR-GR 383

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI E  +  +   F +   A   AE G GLGL I   I+  H G+  + 
Sbjct: 384 QALLQVQDTGVGIPEEHLAHIFERFYRVDKARSRAEGGFGLGLAICDWIVRAHNGKIEVE 443

Query: 460 SKLREGVEVIAILPNT 475
           S +  G      LP  
Sbjct: 444 SAVGRGTTFKVWLPVE 459


>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1467

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 182  MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +       ++     + ++  Y ++      L   A K  L   ++V   +  E +  
Sbjct: 879  PGLESFRELTVVILPPWWASWWAYVIYMIIAVALLLVAIKLSLF-MIKVKNDVYIEQK-- 935

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                +  K +F  ++SHELRTPL  I G  + ++ +      ++   +Y+  + ++ + +
Sbjct: 936  ---LSELKIKFFTNISHELRTPLTLIQGPIQELKEK---EKLSQKGMQYVDLMEKNTKQM 989

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILD  +I+ G+  L  S  +L ++V       ++ A+E  +    ++      V
Sbjct: 990  LQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMV 1049

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTV 420
            WAD++ +  VI N++SNA KFT  GG ++VT+G     +  Y+ ++D+G GI + ++  +
Sbjct: 1050 WADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDEDKHCYVRVEDSGVGIPQSKLSEI 1109

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               F Q   A  +  QG G+GL +++ I++ H G+    S   +G      L
Sbjct: 1110 FERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|227891179|ref|ZP_04008984.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867053|gb|EEJ74474.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 461

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL A+ E+ K   D               F+ ++SHE++TP+ AI GFSE +    +  
Sbjct: 224 RDLTAQKEMEKKQLD---------------FVGNLSHEIKTPITAITGFSETLLDGALD- 267

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRI-EAGRYELSESAISLIDIVRECIIMLQ 340
            + E  K++I  IH     L NL+++++ +SR+ E G   L+   +++  +V++ + +  
Sbjct: 268 -DKEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFS 324

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++K + +  +ID  L S++ D+  ++ +I NL+ NA+++    G + + V       
Sbjct: 325 HEIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNE 383

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I D G GI++ +   +   F +   +      G GLGL + +  +    G+  ++S
Sbjct: 384 WVFVISDTGIGISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKS 443

Query: 461 KLREGVEVIAILPN 474
           ++ +G     ILP 
Sbjct: 444 QINKGTTFYVILPR 457


>gi|296283973|ref|ZP_06861971.1| two-component signal transduction histidine kinase [Citromicrobium
           bathyomarinum JL354]
          Length = 421

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 165/427 (38%), Gaps = 37/427 (8%)

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G       +F +        YA  + L   +     +  E               G+   
Sbjct: 11  GVIIATCSVFLLMLAGIGVGYALAVWLVWTLTLWITQPDE-----QRAEPDPRPEGISRA 65

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            L  +    ++P  L   K   +    +   L + ++   + ++                
Sbjct: 66  RLAEMIENAYSPLLLVDRKRVVIANGSARKLLGHHVVGQDIRVAL--------------R 111

Query: 183 HVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
           H   I+L        +  T +     +++ +   +  ++   +L+++   +         
Sbjct: 112 HPRAIALLDSEDHGEAIVTGLVRRKDVWRVSRYAIDDRSSVVELVSKTAESDI------- 164

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                + A + F+A+ SHELRTPL++I+G+ E +       ++  T ++++  IHR  Q 
Sbjct: 165 -----SRAHTDFVANASHELRTPLSSIIGYVETLSENPED-IDQATARKFLDTIHREAQR 218

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L NL+++++ LSR+EA +++  E  + L  +V       +  A    IE           
Sbjct: 219 LQNLVSDLMSLSRVEAEKHDRPEQPVPLNALVERAA---REGAGPNRIERLAFEASEDFE 275

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D + + Q++ NL+ NA+K+   G  V V +  ++     + ++D G GI    +P +
Sbjct: 276 VLGDPQQLEQLVRNLVDNALKYGREGTPVTVRLSESALGEAKLEVEDRGDGIEAEHLPHL 335

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +          G GLGL I + I+  H G+  I S++  G  V   LP       
Sbjct: 336 TRRFYRTDPGRSRQSGGTGLGLAIVKHIVERHHGRLDIDSEVGHGTIVTVRLPRLGRSRP 395

Query: 481 IPEDNHE 487
            P+   E
Sbjct: 396 APDAVLE 402


>gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 613

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 374 EKNEQERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDPEIAPNFLKVTLDETDRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L LSR+++G  +L    I+  ++V   +    +    + K   I ++       
Sbjct: 432 RMINDLLSLSRMDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELW 491

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  T      +SI D G GI + ++  +
Sbjct: 492 VEVDTDKMIQVIDNIMNNAIKYSPDGGIITVKLMETHNN-IVLSINDQGLGIPKKDLTKI 550

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A    + G GLGL I++ ++  HGG     S+   G     +LP      
Sbjct: 551 FDRFYRVDKARARQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLPYEPYEE 609


>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 10/285 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I   + +     +S   E      +L  A +      ++AE  N AKS FLA+MSHE+RT
Sbjct: 541 IEDGVVRGFFVQVSDITELKAAQRKLADANAELAARTRQAESANAAKSEFLANMSHEIRT 600

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+ AI+G S ++E   +    N   ++ +  +  + + L+ +I+++LDLS+IEAG   + 
Sbjct: 601 PMAAIVGLSHLLENSRL----NPDQQDLLRKMRGASKSLMAVIDDVLDLSKIEAGELRID 656

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381
            SA SL  ++ +   ++ L A ++ +E+  + D  L   +  D   +RQV+ NLLSNA+K
Sbjct: 657 RSAFSLQALLDDLRGLMALSAHDRTLELVMRCDAGLPDQLDGDLMRLRQVLNNLLSNALK 716

Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT + G V + V   + +        +++D+G GI+  E   +   F Q   +      G
Sbjct: 717 FTTV-GEVLLQVALVARQSGRLRLRFTVRDSGIGISAAEQARLFRPFAQVDASTTRRYGG 775

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            GLGL I++ ++   GG   +RS   +G E    L        +P
Sbjct: 776 TGLGLVISRRLVRLMGGDISLRSAPGKGSEFSFDLSFDVDEASVP 820


>gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 484

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 150/311 (48%), Gaps = 13/311 (4%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +      +++    +  +    I LA  +   L+  T ++  + K    +      K +
Sbjct: 164 LMKMTLFAISIGAAVLAIVLAFSIGLANSIVKPLNNITTVSAQMAKGKFNVRIKGDYKYE 223

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L         ++ E  +     N  K  F++S+SHELRTPL +I G+SE ++     P  
Sbjct: 224 LGELSSTLNYMAQEIVR----SNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP-- 277

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  K  +  I +    L+ L+ E+LD S+++    +L +  ++L ++++E ++ L  +A
Sbjct: 278 -EETKIGMQIITKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKA 336

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           ++K I+I    D     ++ D   ++QV LN++ NAVKF+   G ++++      +   +
Sbjct: 337 EKKGIQIKLVSDEK-PIIYGDANRLKQVFLNIVDNAVKFSHENGAINLSFTI-EEKFVIV 394

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++KD+G GI++  +  V   F Q +        G GLGL I Q ++  HGG   + S+L 
Sbjct: 395 TVKDHGIGISDEHLRRVKDRFFQVNP----LNGGTGLGLAITQQLIELHGGAMEMESELG 450

Query: 464 EGVEVIAILPN 474
           +G  VI  LP 
Sbjct: 451 QGTSVIVKLPL 461


>gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1067

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 15/284 (5%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            AL +F      ++ +  K++     K D   +  + +    + ++R  E +  +   L+
Sbjct: 387 GALVYFESSVSPVYDTQQKLIYYNCSKRD-ATQKRIDEEFRTQEQERTIETSRLR---LS 442

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTP++ I+G ++++    + P      + Y+  I  S   LLN+IN++LD+S+I
Sbjct: 443 MMSHDIRTPMSGIIGMTDLLAETELHP----QQRHYLDIIRASSNTLLNIINDLLDISKI 498

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+ E+        + V +   ++  RAQ K + +   + P++   +  D   ++Q++ 
Sbjct: 499 EAGKLEIENREFDFRETVEDVCELMGERAQAKALSLMCFVHPTVPQNLIGDSSRLKQILN 558

Query: 374 NLLSNAVKFTAIGGRVHV--TVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLL N+VKFT   G + V   V   S       I +KD G GI +  +P +  +F Q   
Sbjct: 559 NLLGNSVKFT-DNGEILVVCNVANVSEDIVALRIEVKDTGIGIKKEALPLLFKAFTQAEG 617

Query: 430 AIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAIL 472
           +I     G GLGL I + +      G   + S+   G     +L
Sbjct: 618 SIARQYAGSGLGLAICKELANLAFNGDIGVESQYGVGSTFWTVL 661


>gi|229011293|ref|ZP_04168485.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
 gi|228749949|gb|EEL99782.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
          Length = 351

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 149/354 (42%), Gaps = 16/354 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               +  +         +  + S++++ A  I+         +  + F  +V+  +   I
Sbjct: 9   VMGAIVALFTFLTIIWSIAFFVSSSVMKAFEINVSPFITFLISDMVGFVFIVLIWTLIGI 68

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +     +  +  ++                 +VKI + +    ++   ++    ++DE  
Sbjct: 69  LMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMTDELN 122

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++ + +     E  K Y+  I     
Sbjct: 123 ----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---PVEKRKHYLTIIETETT 175

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y    +   L   +++ ++  +    EK +E+   +D    
Sbjct: 176 RLSKLSQNLLKLTILESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDK--V 233

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V AD++ M QV +NL+ N++KFT  GG + + +         +SI D G GI+E +   
Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKE-FLEVSIHDTGIGISEEQKQH 292

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S    G E I  +P
Sbjct: 293 IFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346


>gi|56413637|ref|YP_150712.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362561|ref|YP_002142198.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127894|gb|AAV77400.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094038|emb|CAR59534.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 920

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLALKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|87311449|ref|ZP_01093569.1| response regulator/sensor histidine kinase [Blastopirellula marina
           DSM 3645]
 gi|87285861|gb|EAQ77775.1| response regulator/sensor histidine kinase [Blastopirellula marina
           DSM 3645]
          Length = 410

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 157/372 (42%), Gaps = 16/372 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G    E L  +  A  LI + +  +  F L   +  +     V +      +        
Sbjct: 41  GPEALEALLQHDVALALIDVQMPIMDGFELAELMRGTERTKRVPIIFLTAGTEDHQRRFR 100

Query: 190 AGMLATALSFF-----------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
                                   + + LF+   ++   + E   L+ E       S + 
Sbjct: 101 GYEAGAVDFLHKPIESDILKSKAEVFFELFRQRQEVARQRDELKVLLHENSRLLEQSRKQ 160

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +  +  +  K+ FLA+++HELR PL  IL   EVI    +  L+ E   E    + R  
Sbjct: 161 SETLQNSDRRKNEFLATLAHELRNPLAPILSAVEVIR---LSELSKEEEIEVYDIVKRQV 217

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           QH++ LI+++LD+SRI   + +L      L D+V+  +        E N ++  K   + 
Sbjct: 218 QHMVRLIDDLLDISRISRDKIQLRREIFQLGDVVKNAVETSTPLIAEANHQLSVKQPSAP 277

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             ++ D   + QVI NLL+NA K+T  GGR+ ++V         IS+KDNG GI    + 
Sbjct: 278 IEIFGDAVRISQVIANLLNNAAKYTPDGGRIELSVALQE-GLVAISVKDNGIGIPPELLS 336

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRV 477
            V   F Q    +  ++ G+G+GL + + ++  HGG+  + S    EG E I  LP ++ 
Sbjct: 337 EVFEMFNQVDKHLDLSKGGLGIGLTLVKRLVEMHGGKIDVISAGEGEGSEFIVRLPISKS 396

Query: 478 LNFIPEDNHEST 489
            +   + +  + 
Sbjct: 397 QDRHQQPSSSTN 408


>gi|290580114|ref|YP_003484506.1| putative histidine kinase [Streptococcus mutans NN2025]
 gi|254997013|dbj|BAH87614.1| putative histidine kinase [Streptococcus mutans NN2025]
          Length = 450

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +      +   +I         ++ +I ++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDDGALTESVAPS---FIKVSLDETNRMMRMITDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           SRI+     L     +    +   +         ++  K  EI +        +  D   
Sbjct: 268 SRIDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDK 327

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           M QVI N+L+NA+K++  GG+V VT+  T+     +SI D G GI + ++P +   F + 
Sbjct: 328 MTQVIDNILNNAIKYSPDGGKVTVTM-QTTDTQLILSISDQGLGIPKKDLPLIFDRFYRV 386

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             A   A+ G GLGL IA+ I+  H G     S+  EG     +LP     + I E
Sbjct: 387 DKARSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLPYENDNDAIDE 442


>gi|251796138|ref|YP_003010869.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543764|gb|ACT00783.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 357

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 127/308 (41%), Gaps = 14/308 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-----KDDLIAELE 229
             Q +  +    +    +      FF         S    L   A+     + +      
Sbjct: 51  VAQLLNLLGGFFLMGLVIQLIGFLFFHKRQKEFTNSMRDTLRRIAQGDFKVRLNFGKMDR 110

Query: 230 VAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
               + DE    A   E+    +  F++ +SHE++TPL +I GF+  ++ ++   ++++T
Sbjct: 111 RYMEILDEINLMADGLEKLEELRQEFISDVSHEIQTPLTSISGFARALQNQS---IDSDT 167

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +Y+  I      L  L   +L L+ +++ ++        L   +   I+  + +    
Sbjct: 168 RMKYLRIIEGESSRLSKLSENLLRLASLDSEKHPFEPKRYRLDRQLGTLILSCEPQ--WT 225

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
              I    D     V ADE  + QV +NL+SN++KFT   G++ VT+    G      IK
Sbjct: 226 GKSIELNADLDDVYVEADEDLLSQVWINLISNSIKFTPEDGQIDVTL-RQKGNQVEFRIK 284

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GIA  +   +   F +   A      G GLGL + + I+  H G  ++ S+L  G 
Sbjct: 285 DNGIGIAADQHELIFDRFFKSDKARSRKVGGSGLGLSLVKKIVEMHHGSVVVESELGHGS 344

Query: 467 EVIAILPN 474
             I  LP 
Sbjct: 345 VFIVTLPA 352


>gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102]
          Length = 2074

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 22/263 (8%)

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              E + +  E   +K RFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I
Sbjct: 1400 LLEAKLK--EAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTI 1453

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              S   L+ +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   +
Sbjct: 1454 QTSANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLV 1513

Query: 355  DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQY---------I 403
            +  +   V  D+  +RQV+LN++ NA+KFTA  G V      +T                
Sbjct: 1514 EADVPAWVKGDKVRIRQVLLNVIGNAIKFTAE-GEVFSRCRVYTEEDPVVCNENEIMLQF 1572

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +I D G G  + E   +   F Q   +      G GLGL I++ ++  HGG+    +   
Sbjct: 1573 AITDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPG 1632

Query: 464  EGVEVI----AILPNTRVLNFIP 482
            +G          LP+      IP
Sbjct: 1633 KGSTFTFTARFTLPSPEDHPNIP 1655


>gi|258592063|emb|CBE68368.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 316

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 18/290 (6%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +        +  L  +         L+ A +      +RAEE    KS FLA++SHEL
Sbjct: 26  AILGRLCGGEQMTALELKTTIARRTRPLQAANTELLRGIERAEEATRQKSAFLANISHEL 85

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL++I+GF+E+++    G L NE    ++G+I  S +HLL L+N++LDLS+IEAG+  
Sbjct: 86  RTPLSSIIGFTELLQSGAFGTL-NEKQAHFVGNILLSSRHLLTLLNDLLDLSKIEAGKLI 144

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           +      L +++   +  L+ +A +K+  I   ++  +S + AD    +Q++ NLLSNA+
Sbjct: 145 IEPEPFVLQEVIETTVGTLRPQADQKHQNIEVTVEDGISLINADPTRFKQILYNLLSNAI 204

Query: 381 KFTAIGGRVHVTVGWTSG----------------RGQYISIKDNGPGIAEGEIPTVLTSF 424
           KF+  GGR+ VT                      +   I++ D G GI+  ++  +   F
Sbjct: 205 KFSHKGGRILVTSRVVPSVLLTTEHTGPERTSGKKIVEITVADTGIGISAEDLSKLFQRF 264

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            Q         QG GLGL + + ++  HGG     S     G      LP
Sbjct: 265 TQLQAPTVKHYQGTGLGLALTKYLVELHGGSIHAHSDGEGRGATFAVRLP 314


>gi|229156832|ref|ZP_04284919.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
 gi|228626752|gb|EEK83492.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
          Length = 448

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + ++K+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWRDKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
 gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
          Length = 613

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 374 EKNEQERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDPEIAPNFLKVTLDETDRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360
            +IN++L LSR+++G  +L    I+  ++V   +    +    + K   I ++       
Sbjct: 432 RMINDLLSLSRMDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELW 491

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  T      +SI D G GI + ++  +
Sbjct: 492 VEVDTDKMIQVIDNIMNNAIKYSPDGGIITVKLMETHNN-IVLSINDQGLGIPKKDLTKI 550

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A    + G GLGL I++ ++  HGG     S+   G     +LP      
Sbjct: 551 FDRFYRVDKARARQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLPYEPYEE 609


>gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/416 (23%), Positives = 167/416 (40%), Gaps = 23/416 (5%)

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           A++ A LSL   V  +     E       +    +  G  W  + +        +   + 
Sbjct: 334 AMHVAELSLLNHVARAANSANETERLIRVIAETIVEYG-PWERVAVGLLPKIGGQLDIVA 392

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFF-----------PVVVALSTQAIMSMHVLDISL 189
              T +      +L    +   +                P     +   +M    L   L
Sbjct: 393 DFGTHMGQSYEGSLVRNQVGTELLALMMAGKSSQFDLDDPPAAESAIVQLMRREELQHIL 452

Query: 190 AGMLATAL--SFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEEN 246
              L           +   L +     L   AE   +LI +  V   L +E R      +
Sbjct: 453 VIPLLHQANSLGVLVLGNSLSRPYSPALLHLAETIGELITDASVRTRLYEEVR----TAD 508

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA++SHELRTPL +I+G++E+++    GPL  E   E +G +  +   LL LI 
Sbjct: 509 RLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLG-ERMGEPLGHMRTASGTLLRLIT 567

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +ILD SR+EAG  ++  + +  +  +R      Q +  ++++ +   +   L  ++A+  
Sbjct: 568 DILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPDHLPYIYANSM 627

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + QV+ NL+ NA+KFT  GG + V+    + R   IS++D G GIA      +   F +
Sbjct: 628 RLEQVLTNLIGNAIKFTDQGG-ITVSAHHHADR-LRISVRDTGIGIAHEHQDAIFLEFRR 685

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
               I     G GLGL I++ ++   GG   + S   EG      +P        P
Sbjct: 686 IEQ-IGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGSTFFIDMPICPTPADAP 740


>gi|301385098|ref|ZP_07233516.1| PAS [Pseudomonas syringae pv. tomato Max13]
          Length = 1046

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 20/278 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I++           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 676 ISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGELD 735

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 736 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGLA 791

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT + GRV + +         
Sbjct: 792 RQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPM-GRVKIALQAVDNPDPQ 850

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   
Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910

Query: 458 IRSKLREGVEVIAIL------PNTR--VLNFIPEDNHE 487
           + S+   G  +   L      P TR  V    P   H+
Sbjct: 911 LDSEPGNGTRISMNLLLTTLEPMTRQPVATKPPAAAHQ 948


>gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 918

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 14/303 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-------LSD 236
                L  +   +            +  + +LS +  +   + +L +A+          D
Sbjct: 470 AYLALLRELGVRSAMIVPLRARDRTRGAITLLSTEPSRRYTVEDLALAEELCNFAALALD 529

Query: 237 ETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +  + +++ N AK  FLA++SHELRTPL AILG++ ++   ++ P   +T+   +  I
Sbjct: 530 NAQLYRESQQVNRAKDEFLATLSHELRTPLTAILGWARMLRQGSLKP---DTHVRALEAI 586

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            R+G     L+ ++LD SRI  G+  L    + L  I+   I  ++  A  K IE+  ++
Sbjct: 587 ERNGTLQAQLVEDLLDASRIITGKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQL 646

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           DP+   +  D+  ++QV+ NLLSNA+KFT  GG+V + +G  +     I + D G GI  
Sbjct: 647 DPNAGPISGDQTRLQQVVWNLLSNAIKFTPRGGKVSIQLGR-AEGLARIQVSDTGQGIVP 705

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
             +P V   F Q          G+GLGL IA+ ++  HGG     S    +G      +P
Sbjct: 706 EFLPYVFDRFRQADSTSTRPHSGLGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIP 765

Query: 474 NTR 476
              
Sbjct: 766 LAP 768


>gi|145300169|ref|YP_001143010.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852941|gb|ABO91262.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1142

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 143/318 (44%), Gaps = 23/318 (7%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +A++    +    L ++L  +      F   ++   ++   +IL                
Sbjct: 490 LAVNYSEGIPWQKLMLTLIPVGTGVTLFILVLSIAYWRLRQEILR-----------RRQV 538

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++ AE     K+ FLA+MSHE+RTP+N+I+G +E +   ++        ++ +
Sbjct: 539 EEALARAKESAEHAAGKKAEFLATMSHEIRTPMNSIVGMAEQLSFTSLDL----EQRQMV 594

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I++  + LL LI  +LD S+++ G+  L  S+  L +++   + M+    Q K ++ +
Sbjct: 595 AIINQGAEGLLQLIGNVLDYSKLDVGKMALVPSSFLLRELIDSVLTMISSEVQRKGLQCY 654

Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKD 407
            ++D  + +    D   ++QV+ NL+SNA+KFT  G     + + V     +   I ++D
Sbjct: 655 LRVDDEVGARFTGDVLRLKQVLFNLVSNAIKFTERGFIELSIKLDVQTDGEQRLLIGVQD 714

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++      +  +F Q   A   +  G GLGL I+ ++    GG+  + S    G  
Sbjct: 715 TGIGMSTEAQARIFNAFEQADGATTRSYGGTGLGLSISHTLAELMGGELRLESAPGLGT- 773

Query: 468 VI---AILPNTRVLNFIP 482
            I     LP      + P
Sbjct: 774 FIGLSVTLPFELRREYDP 791


>gi|288933363|ref|YP_003437422.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888092|gb|ADC56410.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 779

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 448

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 449 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 508

Query: 474 -NTRVLNFIPEDN 485
               V + + ED+
Sbjct: 509 IAEEVEDTLAEDD 521


>gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
 gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
          Length = 1169

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 10/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++    ++   + + +AE  + AKSRFLA+MSHE+R+PLNA+LG  E++    +   
Sbjct: 473 HDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRSPLNAVLGSVELMLDSKL--- 529

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+  + Y      +G  LL+ IN+ILD S+IEAG+  L   + S   IV + + +L   
Sbjct: 530 -NKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLESVSFSPAKIVAQVLRILAPN 588

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A EK I +   I+ ++   V  D + +RQVI NL+ NA+KF+  GG V V +       +
Sbjct: 589 AHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKFS-SGGCVSVEMWIPDSHHE 647

Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     + D G G++      +   F Q      +  +G GLGL I   ++   GG+  
Sbjct: 648 EVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGLGLAICAELIEMMGGKIE 707

Query: 458 IRSKLREGVEVIA 470
           + S+L  G     
Sbjct: 708 LSSRLGHGSCFRF 720


>gi|89897062|ref|YP_520549.1| hypothetical protein DSY4316 [Desulfitobacterium hafniense Y51]
 gi|219667067|ref|YP_002457502.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|89336510|dbj|BAE86105.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537327|gb|ACL19066.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 503

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 155/391 (39%), Gaps = 26/391 (6%)

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
           L    +   +         W +    G            LV           +      L
Sbjct: 135 LLSADQYQQALDPSESPRFWVVNSESGTEL---------LVVLHPLELRGYLVGFIQVSL 185

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
               +  +    L   + LS   +V  L     +    L      +          +   
Sbjct: 186 STQFVQDVLFRQLSIFMLLSVLALVGGLVAYQAVIKKTLVPLSNIVHTMENMDAGNLNER 245

Query: 207 L--FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           L   +   +I +     + ++  LE + +   E +++         RF+A  SHELRTPL
Sbjct: 246 LPVEQGQKEIDTLAVSLNGMLERLESSFTAEKEAKEQM-------RRFVADASHELRTPL 298

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +I GF EV+    M     +  ++ +  ++   + +  LI ++L L++++   Y L +S
Sbjct: 299 TSIHGFLEVLLRGAM--NQPDKLQKSLTSMYAESERMKKLIQDLLLLAKLDRSPY-LEKS 355

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT- 383
              +  ++ E    L++ A+E+ I++    +  +     D   M+QVILNL  NAV+ T 
Sbjct: 356 EKDIGVLILEMEPQLRMLAEEREIQLDLAPEELVP---IDVDKMKQVILNLFHNAVQHTD 412

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G + +++   +     ++++DNGPGI E  +P +   F +   +      G GLGL 
Sbjct: 413 PDKGLIQISLKSEASG-VELTVQDNGPGIPEEHLPHLFERFYRSDSSRTRKYGGAGLGLA 471

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I  S++  HGG   + SK+ EG   I  LP 
Sbjct: 472 ITHSLVELHGGTLRVESKVGEGSRFIVGLPK 502


>gi|229162131|ref|ZP_04290102.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
 gi|228621338|gb|EEK78193.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
          Length = 448

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTRATQKIASGKYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELES-SVMISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 QVELPK 448


>gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 1437

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 13/316 (4%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               +   +  LD     + A  +  + +      +             D+ AE E A + 
Sbjct: 760  VLVSAQQLTPLDQQFRHVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADA- 818

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +  +  AE    AK RFLA MSHE+RTP+N +LG  E+++   +        K+ +  +
Sbjct: 819  LEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL----EGEQKQMVSLV 874

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              SG+ LL+++++ILD +++EAGR ++S SA  L ++    + +L  RA EK + +   +
Sbjct: 875  QDSGRALLHILDDILDYAKVEAGRLDISPSATDLREVFDGTVGLLASRAHEKALAMHVDV 934

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQY--ISIKDNG 409
               + + V  D   +RQ++ NLLSNA+KFT   G V ++   T       +  IS+ D G
Sbjct: 935  AAEVPASVSVDGIRLRQILFNLLSNAIKFTDA-GSVRLSAKCTDVTDDTAHLAISVSDTG 993

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI+     T+   F Q   +      G GLGL I++ +    GG+ ++ S    G  V 
Sbjct: 994  IGISPEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGELVMESAPGHGTAVT 1053

Query: 470  AIL--PNTRVLNFIPE 483
              L  P       +P+
Sbjct: 1054 LRLAMPVLEARYALPQ 1069


>gi|294783470|ref|ZP_06748794.1| sensor histidine kinase/response regulator [Fusobacterium sp.
           1_1_41FAA]
 gi|294480348|gb|EFG28125.1| sensor histidine kinase/response regulator [Fusobacterium sp.
           1_1_41FAA]
          Length = 623

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L  ++         +++ AE  N AK+ FLA +SHE+RTPL  I+G+S ++ 
Sbjct: 127 ELKELNKNLEDKVRERTKELRISKEMAESANKAKNEFLAKISHEMRTPLTPIIGYSRILA 186

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +      + +YKE +  IH SG  LLN  NE+LD S+IE+G+ +L+    ++  + ++ 
Sbjct: 187 KDI----EDPSYKEKLEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYEPFNVRVLFQDI 242

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A+ K I+       +  S+++D+  + ++  N++ NA+K+T   G V   V +
Sbjct: 243 YHEHIDLAEAKGIDFKIDYLHANVSIYSDKIKIYEIAKNIIHNALKYTNK-GFVLCDV-F 300

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 Y ++ D+G GI+E  I  +  SF Q        + G GLGL I + ++    G 
Sbjct: 301 VEKNTLYFNVYDSGIGISEENIANIFESFVQIGK----EQSGAGLGLSITKKLLKVLNGT 356

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + SK+ +G      +P  
Sbjct: 357 IEVESKVGQGSTFKIQIPIE 376


>gi|254416897|ref|ZP_05030645.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176261|gb|EDX71277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1138

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 12/259 (4%)

Query: 226 AELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           A  +   +     +     + N  K  FLA +SHEL+TPL A+LG S +++ + +G L N
Sbjct: 444 ATTQQQVAQELTAKNADLVQLNRLKDEFLAYISHELKTPLTAVLGLSTLLKDQLLGEL-N 502

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I+++G+ L+ ++N+ILDL+R+E G+ EL+   + +  +             
Sbjct: 503 ERQARYARLIYQNGRQLMAVVNDILDLTRMETGQLELTLEPVQIQSLCDRAYQQALQVYS 562

Query: 345 EKN---------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + N         I     I+P L ++ ADE  +RQ++ +LLSNA+KFT     V + V  
Sbjct: 563 DNNPNHEGATPDISFVLDIEPGLDTIIADELRLRQMLAHLLSNALKFTDSQNTVGLKVN- 621

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   +I D G GI E +   +   F Q    +    +G GLGL + Q +   HGG 
Sbjct: 622 NQDGWIAFTIWDTGIGIPEDKQHLIFQKFQQLEEPLTRQFEGTGLGLVLTQRLARLHGGD 681

Query: 456 FLIRSKLREGVEVIAILPN 474
               SK   G E   +LP 
Sbjct: 682 ISFISKNGNGSEFTLLLPP 700


>gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 583

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 133/239 (55%), Gaps = 4/239 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG---DIHRSGQHLL 302
              ++ F +++SHELRTPLN ILG  ++  L       ++  KEY      + ++   LL
Sbjct: 320 EKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASENTSKYKKEYSKANKRMKQNSYRLL 379

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N I+D+++I++G Y+++     +  ++RE ++ ++   +   ++I  K + + + + 
Sbjct: 380 RLVNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIENAGLQIEFKANTNQAIIA 439

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D + + +++LNLLSNA+KFT  GG++ VTV        ++S++D G GI + +I +V  
Sbjct: 440 CDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQ-NRIFMSVRDTGIGIPQEKINSVFE 498

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F Q         +G G+GL + + ++  H G+  +RSKL EG E I  LPN  +   I
Sbjct: 499 RFKQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEGTEFIIELPNEIITEEI 557


>gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 565

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E    + +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 311 EDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 366

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 367 DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQK 426

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFT+  G + +    T      
Sbjct: 427 NQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSE-GSITLGYRLTRQKDEL 485

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      +  +G GLGL I + I+   GG   + ++
Sbjct: 486 YFFVKDTGIGIPADQAGKVFERFVKL----NTFIKGTGLGLAICRVIIERLGGTIGVETR 541

Query: 462 LREGVEVIAILPNTRVL 478
             +G      LP    +
Sbjct: 542 EGKGSCFWFRLPVREDM 558


>gi|239617738|ref|YP_002941060.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506569|gb|ACR80056.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 580

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 125/250 (50%), Gaps = 8/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    ++   + ++ AE  N +++ F +++SHELRTPL  ILG+SE++          
Sbjct: 321 ITEQLRRENFLKKQKEEAELLNKSQAAFFSNISHELRTPLTIILGYSEMLYEIVG----- 375

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  I  S  +LL L+N+ILD+S+I +   ++   ++++  +V   +       +
Sbjct: 376 PAERRMVSMIADSANYLLKLVNDILDISKITSRAVKVEPESVNIKLLVNNILEQFNSLVE 435

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +K I++  K+     +   D+  +++++ NL+ NA+KFT   G V V V          +
Sbjct: 436 KKGIKLESKLMICRENFVTDKTKLQRILTNLIGNAIKFTNE-GVVRVLVKEEGSNVFLFA 494

Query: 405 IKDNGPGIAEGEIPTVLTSFGQG--SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++D G GI +     V   F Q     +    ++G GLGLP+ + ++   GG+  ++S+ 
Sbjct: 495 VEDTGIGIKKEYQDKVFERFVQIKDDRSRVKFKKGTGLGLPLTKELVQLLGGRIWLQSEY 554

Query: 463 REGVEVIAIL 472
            +G  V   L
Sbjct: 555 GKGTTVYFTL 564


>gi|311234406|gb|ADP87260.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 742

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 21/332 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F         F+ VV      AI         +A ++   + F    +  L ++  + ++
Sbjct: 259 FSYRKVGHHPFWVVVGLALDDAIQPWFRNAAYVAVIVVAFVVFTALSSRSLRRALQQEVA 318

Query: 217 CQAEKDDLIAELEVAKSL-----------SDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +    ELE   +              E +++A+  N AKS FLA+MSHE+RTPLN
Sbjct: 319 ARNAVERARNELETRVAERTALLEDSNLHLREAKEKADNANAAKSAFLANMSHEIRTPLN 378

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG  +++E   +         EY+G   RSG+ L +L+ +ILDLSRIEAG+  L+E  
Sbjct: 379 GLLGMLDLLEATGLDAG----QAEYLGMARRSGRRLTDLLGDILDLSRIEAGKLVLAEQP 434

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +L D++          ++EK + +   +D        D   +RQ++LNL+ NA+KFT  
Sbjct: 435 FTLSDVLASIRETFAPLSREKGLPLEFALDAVPGPFLGDAVRVRQILLNLVGNAMKFTNR 494

Query: 386 GGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G++ + V                + D+G GI E ++ ++   F Q    +    QGVGL
Sbjct: 495 -GQMKLEVKTLLPMPDGRARILFMVHDSGCGIPEEQVGSICEPFTQVEAPLTKRYQGVGL 553

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I ++++  + G   + S++  G  V   L
Sbjct: 554 GLAITRTLVHAYDGTLTVDSQVGVGTSVYLTL 585


>gi|254412814|ref|ZP_05026587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180549|gb|EDX75540.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 409

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 9/267 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +   +    Q   D L       +S       + +E +  KSR ++++SHE RTPL  I
Sbjct: 150 HRVAERTSELQQANDQL----RTLESQLRLALAQEQELSHFKSRIISTVSHEYRTPLTTI 205

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
              +E++E   +  L+ E  +++   I  S +HL  L+ ++L +++ E  + E +   I 
Sbjct: 206 NSSAEILER-YLHKLDAEKQRKHFQRIQLSVKHLTALVEDVLFINKAELEKVEFNPEPIY 264

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L+    E +  LQ+   E   ++F     S      D K +RQ+I NLLSNA+K++  GG
Sbjct: 265 LVSFFEEIVEGLQITVDE-KHQLFFTHHGSCECANLDPKLLRQMITNLLSNAIKYSPQGG 323

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           ++ + +     +     ++D G GI + +   +  SF +       A  G GLGL I + 
Sbjct: 324 KITLNLSCEENQ-VVFQVQDKGIGIPQADQAKLFESFSRAGNVGTIA--GTGLGLSIVKK 380

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474
            +  HGG+  ++S++  G      LP 
Sbjct: 381 CVDLHGGEITVKSEVGFGTTFTVTLPL 407


>gi|312883344|ref|ZP_07743070.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368960|gb|EFP96486.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 848

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 15/315 (4%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDE 237
              I+L    AT       +   +++ N+  +    +   ++A+ +      +A+  SDE
Sbjct: 403 APHINLCFKGATLTGINISVHSKVYRWNLSPILSDDKIVKIMAQGQDITSFVMAEKESDE 462

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK AE     ++ FLA MSHELRTPLN I+G +++++   +   + E     +  +  S
Sbjct: 463 ARKEAEASAKNQADFLARMSHELRTPLNGIMGVAQLLKGRMVDKQDIEK----MEVLCSS 518

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356
           G+HLL ++N+ILD S+IE   + +  +   L D+      +      EK +    + +  
Sbjct: 519 GEHLLAVLNDILDFSKIEQSSFNIEGAKFHLSDLGYSIEKVFGPICFEKGLMFELRSNIE 578

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIA 413
               V++D+  + QVI NL+SNAVKFT   G V +++ ++ G      +I + D G GI 
Sbjct: 579 DDIWVFSDQVRLNQVIYNLVSNAVKFTHE-GEVVLSLSYSQGSEFSQLHIEVSDTGIGIK 637

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +  +   F Q          G GLGL I QS++   GG+  + S    G      +P
Sbjct: 638 NERLEAIFDPFVQAGPDTTQIYGGSGLGLAIVQSLVTTMGGKVGVESVYGSGTRFFITVP 697

Query: 474 NTRVLNFIPEDNHES 488
                +   E + E 
Sbjct: 698 IQLTSSDHKEQSDEK 712


>gi|206577626|ref|YP_002236379.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
 gi|206566684|gb|ACI08460.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
          Length = 779

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 448

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 449 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 508

Query: 474 -NTRVLNFIPEDN 485
               V + + ED+
Sbjct: 509 IAEEVEDTLAEDD 521


>gi|260769124|ref|ZP_05878057.1| sensor protein TorS [Vibrio furnissii CIP 102972]
 gi|260614462|gb|EEX39648.1| sensor protein TorS [Vibrio furnissii CIP 102972]
          Length = 974

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 162/375 (43%), Gaps = 29/375 (7%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA--- 178
               +V+               +++  ++ + +   ++  +V         AL + A   
Sbjct: 321 ATAAVVQLSRTLSLAQWTLSVLSVMGLIATTLIVWRVVYQSVVKRLARHTAALLSVAKGQ 380

Query: 179 -----IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
                    H     +   +ATA      +              Q  K  L   +E   +
Sbjct: 381 LHVEVDTQGHDELAEMGRAIATARDTAKALNVVAESEVKAKRELQEHKAHLEDVVEERTT 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R  AE+ + +KS FLA+MSHE+RTP+N +LG + +++   +
Sbjct: 441 QLRETNHKLNQEVLNHAKARLDAEQASRSKSVFLATMSHEIRTPMNGVLGTAHLLQDTPL 500

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               ++  + Y+  I +SGQ+LL ++N++LD S+IEAG  ++  +  +L  ++R    ++
Sbjct: 501 ----SDVQRHYVNVIDQSGQNLLAILNDVLDYSKIEAGHLQIRHANFNLRHMLRNVYQLM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
           + RA EK + +   +D  L+  W  DE  ++QV+ NL+SNA+KFT  G   + V      
Sbjct: 557 ESRAIEKGVTLNLHVDSDLAEDWQGDETRLQQVLNNLVSNAIKFTPHGHIDLAVYADPDD 616

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     + D G GI E +  T+  +F Q    + +   G GLGL I+  ++A   G+  
Sbjct: 617 EQKLLFEVCDTGIGIHETDQQTLFDAFTQAEAGLATQ-GGTGLGLAISHRLVAAMQGELR 675

Query: 458 IRSKLREGVEVIAIL 472
             S + EG      L
Sbjct: 676 CESVVGEGSRFYFSL 690


>gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 878

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+RAE  + AKS FLA+MSHE+RTP+N+ILG  E++    +         + +  I   
Sbjct: 500 ARRRAEAASQAKSMFLANMSHEIRTPMNSILGHGELLARTRLDT----EQADCVQGIRVC 555

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + LL +IN+ILD S+IEAG   ++   + L  ++     ML  +AQ+K +++       
Sbjct: 556 AESLLVIINDILDFSKIEAGMLRIAPEDVDLGGLLARVRTMLSEQAQKKGLDLQLVTAGL 615

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAE 414
              V  D   + Q+++NL+ NA+KFT  GG  + V     +G       S++D G GI+ 
Sbjct: 616 PQVVSTDAGRLTQILVNLVGNAIKFTEHGGVELSVRGEAHAGGKAALCFSVRDTGIGISA 675

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREGVEVIAILP 473
                +  SF Q   ++     G GLGL IA S++   GG    ++S+  +G      L 
Sbjct: 676 DRQKGIFVSFEQADGSLTREYGGTGLGLTIANSLVRLLGGSGISVKSQTGQGSTFSFTL- 734

Query: 474 NTRVLNFIPEDNHESTQ 490
              V    P     +  
Sbjct: 735 VMNVSAPAPAQELAAID 751


>gi|162453383|ref|YP_001615750.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161163965|emb|CAN95270.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1676

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 128/283 (45%), Gaps = 16/283 (5%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             L +    +     E +    E+E A+   +E  ++    +  KS F+A+MSHELRTPLN
Sbjct: 950  ALGEKARLLAEQNVEVERKNHEVEQARQALEEKARQLALTSKYKSEFMANMSHELRTPLN 1009

Query: 266  AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            ++L  S+ +       L      EY   IH SG  LL LIN+ILDL++IE+G   +    
Sbjct: 1010 SLLILSDQLSRNNDQNLT-ARQVEYAKTIHASGTDLLGLINDILDLTKIESGTVVVDVGE 1068

Query: 326  ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
            IS  D+        +  A+ K ++       +L + ++ D K ++QVI NLLSNA KFT 
Sbjct: 1069 ISFTDLSDYVRRTFRHVAEAKKLDFELSFSSTLPTSMFTDAKRLQQVIKNLLSNAFKFTE 1128

Query: 385  IGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
              G+V + V    G                 +S+ D G GIA  +   V  +F Q   + 
Sbjct: 1129 R-GKVVLEVTVARGGWSRENEVLSRADVVIALSVHDTGIGIAPDKQQIVFEAFQQADGST 1187

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                 G GLGL I++ I    GG   + S    G      LP 
Sbjct: 1188 SRKYGGTGLGLAISREIAGMLGGDLTLISAPGRGSTFTLYLPR 1230


>gi|229589257|ref|YP_002871376.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361123|emb|CAY47986.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1215

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 136/274 (49%), Gaps = 19/274 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           ++RA+E N AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 698 ISERRQLFDEIRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRADQGHLD 757

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  I   + S + LL LI +ILD++RIE+GR  L+   ++L +++   + +    A
Sbjct: 758 RPA----IEVAYNSAKDLLELIGDILDIARIESGRLSLAPERVNLREVIESVVRVFDGLA 813

Query: 344 QEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           ++K + +  +  P    + V  D    +QV+ NL+SNA+KFT   G+V++ V        
Sbjct: 814 RQKTLSLSLEFKPDRDDTEVLIDPLRFKQVLSNLVSNAIKFTER-GQVNIKVEVLPTDVA 872

Query: 402 Y-----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 + ++D G GI+  +   +   F Q   + + A  G GLGL I +S+ A  GGQ 
Sbjct: 873 QQVEMKLVVEDTGIGISRDDQLRLFEPFAQADNSGQLARSGAGLGLVICRSLCAMMGGQL 932

Query: 457 LIRSKLREGVEVIAIL------PNTRVLNFIPED 484
            + S    G +V   L      P        PE 
Sbjct: 933 SLSSVPMVGTQVHVNLKMARLQPLQTTHEPKPEA 966


>gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 1173

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 10/239 (4%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +  R  AE    AKS+FLA+MSHE+RTPL AI+G+ E +    +              + 
Sbjct: 556 ELARNSAE----AKSQFLANMSHEIRTPLAAIIGYGETLLDPDL---TEREKHTSAETVV 608

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RSG+HLL+LIN+ILD S+I+A + ++   +++L +++ E       RA+EK +      +
Sbjct: 609 RSGRHLLDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHIICE 668

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIA 413
             L   +  D    RQ+I+NL  NA+KFT   G + + V     R   +  + D G G+ 
Sbjct: 669 YPLPEKISTDPTRFRQIIINLCGNALKFTEK-GSISLNVRCDRQRQALVARVVDTGIGMK 727

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +   F QGS AI     G GLGL I++ +    GG   + S   EG E    +
Sbjct: 728 PEQLGRLFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTSTYGEGSEFELSI 786


>gi|220930742|ref|YP_002507651.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001070|gb|ACL77671.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 617

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 4/258 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV--IE-LETM 279
           D  AE       S +T ++ +E +  K+ FL ++SHELRTPLN ++   ++  ++  +  
Sbjct: 335 DKAAEEAAVTRYSSQTSEKLKEWDKLKTDFLCNVSHELRTPLNLMISSLKLSSLKISQNH 394

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L+     ++   ++++   L  +IN I+D+++I+AG  EL+ S  +++DIV E ++ +
Sbjct: 395 GVLDTALMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLELNLSNNNIVDIVEETVLSV 454

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
               ++K I +    D     +  D   +++++LNL+SNAVKF   G  ++V++   S  
Sbjct: 455 ASHIKDKEITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNNDGREIYVSIA-DSID 513

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+KDNG GI+    P +   F Q   ++    +G G+GL I + ++  H G   + 
Sbjct: 514 SVKISVKDNGIGISLENQPLIFERFIQVDKSLTRQHEGSGMGLTITRYLVELHKGTIALE 573

Query: 460 SKLREGVEVIAILPNTRV 477
           S+   G      LP   V
Sbjct: 574 SEPNIGSTFTITLPVYLV 591


>gi|330445858|ref|ZP_08309510.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490049|dbj|GAA04007.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 669

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 22/276 (7%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                E      E    K+ F+A+MSHE+RTP+N +LGF + +E   +   +    +  I
Sbjct: 259 NRKLREQADDLSEAIKIKAEFMANMSHEIRTPMNGVLGFVQCLEERKLDKES----RRQI 314

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I  S   LL +INEILD S++E+G  EL  +  +    V  CI     +A+ K I + 
Sbjct: 315 GYIKESAYSLLVIINEILDYSKLESGNVELHLTPFAFNPFVHSCITPFIHQAKIKKIHVS 374

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------------ 398
            +I   ++S   ADE  +RQ+++NL+ NAVKFT   G V ++V   S             
Sbjct: 375 TEIGDDIASSFIADEGRLRQILINLVGNAVKFTHT-GSVTLSVERLSSPVQQCEELRKYN 433

Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +     + D G GIAE ++  +  S+ Q   +I     G GLGL I+ S+      
Sbjct: 434 DKHIQWLRFKVIDTGIGIAEEKLAFIFDSYRQADGSISRQFGGTGLGLSISNSLCKLMFA 493

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +  + S + +G      +P  +      E++ E+ Q
Sbjct: 494 ELKVESCIGKGTTFWFDIPLKQSDEKRGENSEENIQ 529


>gi|317405681|gb|EFV85977.1| hypothetical protein HMPREF0005_01266 [Achromobacter xylosoxidans
           C54]
          Length = 515

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 173/448 (38%), Gaps = 21/448 (4%)

Query: 32  DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91
               E+ TL  +  + V        L V  +      + +   W  +  A+  A + +  
Sbjct: 73  AVATELATLLYKQSYGVLFANFAVALPVVYVMRNAAPDWLLASWIAVVYALTLARVLVCH 132

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           + +        +  W     +     GL W L  +V   +     L         +    
Sbjct: 133 RFLRRGPGP--LRPWIRGFCLLSWTSGLLWGLAGVVAVLSGQDMMLAFGCVMLAGMCSGA 190

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
               +   P A   S   +V       + +   L +  A      L    Y +   ++S 
Sbjct: 191 VPSLSAY-PPAYAGSALGMVAPFILVCVAAADGLHLVYAAFGVCLLLVNLYFSAVTYRSL 249

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              ++ + E   L+          +  R R    + AK+RFLA+  H+LR P++A+  F+
Sbjct: 250 KTTVALRFENTALV-------RSLELERDRVAAADRAKTRFLAAAGHDLRQPVHALGMFT 302

Query: 272 EVIELETMGPLNNETYKEYIGDIHRS---GQHLLNLINEILDLSRIEAGRYELSESAISL 328
           +++         N T ++ +    R       L  L++ +LD+SR++A    +   A+ L
Sbjct: 303 DILASRA--ESGNVTAQDALHVARRQQTVLDSLNRLLDGLLDVSRMDAHLLRIEGRAVDL 360

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             +  +  +     A+ + + +     P+  ++  D   +R+++ NLL+NA+ +T  GG 
Sbjct: 361 DQLFDDIRLDFASLARARGLRLSV--APTSLALDTDPALLRRILDNLLTNALSYTPKGG- 417

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--AEQGVGLGLPIAQ 446
           V ++     G    I + D G GIA      V T F +G+ A  S  A QG+GLGL I +
Sbjct: 418 VLLSARRRRGG-VLIQVWDTGVGIAPELQEAVFTEFTRGAGAPASPPAGQGLGLGLAIVR 476

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     G+  +RS   +G      LP 
Sbjct: 477 RLAGLLHGEITLRSTPGKGSVFSLWLPA 504


>gi|239637988|ref|ZP_04678949.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
 gi|239596551|gb|EEQ79087.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
          Length = 564

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            ++    +  F+A++SHEL+TP+ +I GF+E +        + E+   ++  I +    +
Sbjct: 335 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEESLNMFLNIILKESNRI 392

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +L+ ++LDLS IE    E++ S ++L ++    I  LQ +AQ KNI I  KI+  +   
Sbjct: 393 ESLVMDLLDLSHIEQQN-EITTSYMNLSELAYTTIDNLQNQAQNKNITIESKIERDVI-F 450

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            A+E  + QVI NLLSNA+ ++    +V V+V    G+   + I+D G GI+  E   + 
Sbjct: 451 KANENKIAQVITNLLSNAINYSTNDNKVIVSVYR-EGKRVNLEIQDFGIGISAEEQKHIF 509

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   A      G GLGL I + I+ +H G+  + S+L EG       
Sbjct: 510 ERFYRVDKARSRDSGGTGLGLSITKHIVESHNGRISVISRLNEGSTFKVTF 560


>gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 856

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                  A++ + AKS FLA MSHELRTPLNAILGF+ V+E +   PL N+  +EY+  I
Sbjct: 480 LKRALIAADQGSQAKSEFLARMSHELRTPLNAILGFARVLEKDAASPL-NDAQQEYVHHI 538

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              GQHLL LINEILDLS IE+G+ ++    I L  ++ EC+ +++  A  + I +    
Sbjct: 539 LHGGQHLLGLINEILDLSAIESGKLKVEIEDIDLPSVLHECLALIKPLASNREITLKISG 598

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             S ++V AD K ++QV+LNLLSNA+K+   GG V V +G T      + I D G GI  
Sbjct: 599 SES-ATVAADRKRLKQVLLNLLSNAIKYNRHGGEVQVNIGATPSG-IRLDISDTGQGIPP 656

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                V   F +  +      +G G+GL I + ++   GG     S +  G      L  
Sbjct: 657 ELAQRVFQPFDRLGLE---NSEGTGIGLAITRRLVELMGGSICFESTVNIGTTFRVELVP 713

Query: 475 TRVLNFIPEDNHEST 489
                  P D  ++ 
Sbjct: 714 AGQQGLAPADESQTA 728


>gi|239623825|ref|ZP_04666856.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521856|gb|EEQ61722.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1081

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 8/258 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           + +  D++ + +  K         AE+ N AKS FL+ MSHE+RTP+NAI+G S +    
Sbjct: 533 RTDVTDVVRKEQRQKEDLAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSTIAAQS 592

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                ++E  ++ I  I  S + LL+LIN+ILD+SRIE+G+  L    I   D +     
Sbjct: 593 IG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEDFLNGINS 649

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +   +A  + ++    +DP L   +  D   ++QV++N+LSNA+KFT  GG+V ++    
Sbjct: 650 ICYAQAAARGVDYECIVDPVLDDYYMGDAMKLQQVLINILSNAIKFTKEGGKVTLSAALR 709

Query: 397 ----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
               +       + D G G+ E  IP +   F Q S    +   G GLGL I++SI+   
Sbjct: 710 RKTKNDAVLRFIVNDTGIGMGEEFIPHIFEPFSQESTGTTTPYGGSGLGLAISKSIVDMM 769

Query: 453 GGQFLIRSKLREGVEVIA 470
            G+  +RS    G E   
Sbjct: 770 DGKINVRSIKGIGTEFTV 787


>gi|160941294|ref|ZP_02088631.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435855|gb|EDP13622.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1075

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   ++   + +  D++ + +  K         AE+ N AKS FL+ MSHE+RTP+NA
Sbjct: 516 ISRELERVCVARTDVTDVVLKEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNA 575

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S +         ++E  ++ I  I  S + LL+LIN+ILD+SRIE+G+  L    I
Sbjct: 576 IIGMSTIAAQSIG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKSEKI 632

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
              + +     +   +A  K +E    +DP L   +  D   ++QV++N+LSNA+KFT  
Sbjct: 633 PTEEFINGINSICYSQADVKGVEYECIVDPVLDDYYIGDAMKLQQVLINILSNAIKFTQE 692

Query: 386 GGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG+V  +        +       + D G G+ E  +P +   F Q S    S   G GLG
Sbjct: 693 GGKVTFSASQRRKTKNDASLRFIVNDTGVGMNEEFLPHLFEPFSQESTGTTSLYGGTGLG 752

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I+++I+    G+  +RS    G E   
Sbjct: 753 LAISKNIVDMMDGKITVRSIKGIGTEFTV 781


>gi|148653889|ref|YP_001280982.1| histidine kinase [Psychrobacter sp. PRwf-1]
 gi|148572973|gb|ABQ95032.1| histidine kinase [Psychrobacter sp. PRwf-1]
          Length = 555

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 6/237 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F+ ++SHELRTPL  I+G+ E    +   P  +  ++     + +    
Sbjct: 292 RLHHLEQMRKDFVGNVSHELRTPLTVIMGYIETFSDQ---PDLDPKWRRGFSLMTQQTVR 348

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  +IN++L LSR+E     +    + +  ++       Q   ++ N  I   +D     
Sbjct: 349 MNQIINDLLLLSRLENEE-SIQSERVDMPKLLTRIFDDAQAYNKDYNHLIDLHLDSQQ-D 406

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++  E  +   +LNL++NA+K+T  GG V +T           ++ DNG GIA+  +  +
Sbjct: 407 IYGAEGYLHSALLNLVTNAIKYTPKGGEVRITWQEVKEGCL-FTVSDNGIGIADEHLDRL 465

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              F +       +  G GLGL I + ++  H  +  I S   +G +   + P  R+
Sbjct: 466 TERFYRVDGGRSRSTGGTGLGLAIVKHVLYQHEAKLTIESVEGKGSKFHVLFPRRRI 522


>gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 878

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 17/253 (6%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSE----VIELETMGPLNNETYKEYIGDI 294
           R+  E+ N AK +F  ++SHELRTPL  I   ++    ++  + +    N   +  +  +
Sbjct: 364 RRIEEDANKAKLQFFTNISHELRTPLTLI---ADPVNYIMHDDNL----NSQQRSMLQIV 416

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            R+   L  L++EILD  +++ G+ EL  S  +L + +++ I++    AQ+K+I I    
Sbjct: 417 QRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIMLFSASAQKKHIAISMN- 475

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P    + AD+  + ++  NLLSNA+K+T+ GG + +T          IS+ DNG GI+ 
Sbjct: 476 APDAVMLRADQDKIERICYNLLSNALKYTSEGGEITLTAK-EENGRVMISVADNGCGISS 534

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            E+P +   F Q   A +    G G+GL I ++    H G+    S   +G      +P 
Sbjct: 535 DELPYIFDRFYQAKNAGR----GTGIGLAIVKAFTELHHGEVSATSVEGKGSTFTIHIPV 590

Query: 475 TRVLNFIPEDNHE 487
            +      +   +
Sbjct: 591 RQKGEVTNQPTEK 603


>gi|313114103|ref|ZP_07799655.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623512|gb|EFQ06915.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 449

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 10/237 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F A++SHEL+TPL +I G++E+IE     P +      +   IH     ++
Sbjct: 218 ENNEKMRQEFTANVSHELKTPLTSISGYAELIETGIAKPEDVPG---FAQKIHVEASRMI 274

Query: 303 NLINEILDLSRI----EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            L+N+IL LS +    EAG  E     + L+ + ++C+   +L A+   I +    + +L
Sbjct: 275 QLVNDILQLSSLDNASEAGS-EPEMETVDLLTVAKDCVERQKLNARRAYISLNCLGESAL 333

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  +   + ++  NL  NA+++   GG+V +T   +      +++ DNG GI +    
Sbjct: 334 --VHGNRALLDELCQNLCDNAIRYNRPGGKVQITTACSRDGHCTLTVADNGIGIPKEAQS 391

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +V   F +   +   A  G GLGL I + I   H  +  + S++  G  +    P  
Sbjct: 392 SVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQVDVGTTITVTFPTA 448


>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 838

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 186/479 (38%), Gaps = 49/479 (10%)

Query: 39  TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW--SLITLAVYAANLSLGKKVMNS 96
            +   S     P+     L ++ +   +               + +     +L  +V   
Sbjct: 241 RISAGSPVPGLPMSVCLSLPLSTVLRRWHGLAWMIGLGTLAAVVGIGVLTGALAIRVRRD 300

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
            +        +  L                        + L   ++      + I     
Sbjct: 301 RL---AAKRQQRRLEELVAL------------RTADLQQLLAFNETILETSPVGIGVYHQ 345

Query: 157 FMLPYAVFLSFFPVVVA--LSTQAIMSMHVLDISLAGMLATALSFF-------------- 200
                +V  SF  ++     + Q++   H+     AGML  A++                
Sbjct: 346 DGQCISVNDSFCRIIGGDKEALQSLNFRHLDSWREAGMLDHAVATLETGAPSHLECRTVT 405

Query: 201 -----TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                 +I  H  +     +         I E +  ++     ++ AE  N+AKS FLA+
Sbjct: 406 SFHKDIWIECHFVRFVRDGIDHLLLLLADITERKQVEAALRNAKRVAETANVAKSEFLAN 465

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPLN +LG  +++   ++    +   +EY+     S Q L  L+++ILDLSRIE
Sbjct: 466 MSHEIRTPLNGVLGMLQLMRTTSL----DAEQREYLAAAILSTQRLTGLLSDILDLSRIE 521

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L E+   + D+    + +  L A+ K + +    D ++   +  DE  +RQ++ N
Sbjct: 522 AGKLTLQEADFKVADLKASILEVFSLVARNKGLRLEFSTDAAMPARLAGDETRIRQILFN 581

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           L+ NA+KFT  GG V V       R         S++D G GI +  +  ++  F QG  
Sbjct: 582 LVGNALKFTTTGG-VDVAAFALPPRADGRLPVVFSVRDTGVGIPDARLADIVEPFVQGLG 640

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           A  +  +G GLGL I + ++   GG+  I ++   G  +   LP        P++   +
Sbjct: 641 APYAPREGAGLGLSIVRRLVRMMGGELAIDNREGGGTTIYCALPLRAAQKDAPDETPPA 699


>gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2]
 gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 754

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYIG I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 566 VEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIA 625

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYI 403
              +E  +++D     +  D + + QV+ N L+NA KFT   G + +  +         I
Sbjct: 626 -PRLEFLKEVDNIPLEINVDRERLIQVLTNFLNNASKFTET-GYIKLGYIYLPDEGRVRI 683

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 684 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGRIELKSEVG 739

Query: 464 EGVEVIAILPNTRV 477
           +G     +LP   V
Sbjct: 740 KGSRFTVVLPCRVV 753


>gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
 gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
          Length = 752

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N ++G ++V+    +    +E  + Y+  I  SG+ LL +IN++LD 
Sbjct: 219 FLANMSHEIRTPMNGVVGMADVLTETPL----SEEQRLYVDTIKNSGEALLVIINDVLDY 274

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQ 370
           S+IEA + +L     +L   + E + +LQ  A++K I +       L S    D   +RQ
Sbjct: 275 SKIEAEKLQLHPEPFNLEKSIHEVLRLLQSIARDKGILLCVDYSLLLTSDFIGDPGRLRQ 334

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFG 425
           ++ NLL NAVKFT   G V V V              + ++D G GI E  I  V   F 
Sbjct: 335 ILTNLLGNAVKFTTE-GSVTVRVSGKPDEATGKVIVQVRVEDTGIGIPEDMIDHVFGEFN 393

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIP 482
           Q          G GLGL I + ++    GQ  + S+   G      +   P   V    P
Sbjct: 394 QVESERNRQFDGTGLGLAITKQLIKMMDGQIWLTSEEGVGSCFGFEIALEPPGPVTLTHP 453


>gi|257789868|ref|YP_003180474.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257473765|gb|ACV54085.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 660

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 48/347 (13%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           N  +  A   SF  +  A+      +M    + +  ++   + F   I     +      
Sbjct: 172 NQAIISAAARSFDQLYKAVGKTRQDTMFTASVLMTAVMVALVLFLAVIKRKNRQ------ 225

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                           +       ++A++ + AKSRFL+++SH++RTPL AI+G  ++  
Sbjct: 226 ------------ERELQESLRCAMEKAQDASEAKSRFLSNVSHDIRTPLTAIMGLVDIAV 273

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                    +  KE    +  S  HLLNL+N++LD+S+IE+G+  L      L  +V   
Sbjct: 274 EHI---DERDRVKECFDKVQLSSHHLLNLVNDVLDMSKIESGQINLCCKPFDLHVVVETL 330

Query: 336 IIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +++ +A  K++     ++D     V  DE  + QV++NLL NAVK+T   G V + V 
Sbjct: 331 GSIVRPQADSKHLTFSVLRVDVEEGLVLGDEMHVNQVLINLLGNAVKYTEPSGTVSLAVE 390

Query: 395 WTSGRGQY--------------------------ISIKDNGPGIAEGEIPTVLTSFGQGS 428
              G  +                             ++D+G G+++  +  +   F +  
Sbjct: 391 ELRGDERVEYAAQHGLSLEPTSHDGFDMCIRLIRFIVEDDGIGMSKEFMSRLFDPFEREE 450

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  + + +G GLGL I +++    GG   ++S+   G     +LP  
Sbjct: 451 VPTRLSVEGTGLGLSIVKNLADLMGGTVQVQSERGRGSRFTLVLPFE 497


>gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 581

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP+ ++   +E ++       + +    +I  IH     
Sbjct: 352 ELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGA--ASDPDVAAGFIDKIHLEVDK 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+ DLS IE+G+  L+     +   ++     L  +A+   I +  ++  +L  
Sbjct: 410 LAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPR 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE  + QV++NL+ NA+KFT  GG++ + V  T  +   + + D+G GI E ++  V
Sbjct: 470 VRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGV-RTQSQTLVVYVTDSGIGIPEDDLTRV 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +      G GLGL I++ I+  HGG     S   +G      LP  
Sbjct: 529 FERFYKVDKSRSG--GGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581


>gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1171

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 3/270 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               +   +    +AE      E++ A        ++    +  K+RF +++SHELRTPL
Sbjct: 179 RRTEELKTRAERVEAEVFLRAQEIQRANEQLRVANEQLSRLDELKTRFFSNVSHELRTPL 238

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
             +L   + +     G L +   +E +    R+ + LL L+N +LD +RIEA R ++S  
Sbjct: 239 TLMLCPIDELLTSAPGGLTD-RQRELVELARRNARRLLKLVNTLLDFARIEAARMQVSYE 297

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           A+ L  +  E +   +   +   + +     P    V+ D +   +++LNL+SNA KFT 
Sbjct: 298 ALDLSALTAEVVSAFRAAVERAGLRLVVDCPPLPERVYVDREMWEKIVLNLVSNAFKFTL 357

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + + + W +G    + ++D G GI   E+P +   F +   A   + +G G+GL +
Sbjct: 358 E-GEIGIALRW-AGDHVLLEVRDTGTGIPADELPRIFDRFHRIQGAHGRSHEGSGIGLAL 415

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + ++  H G+    S++  G      +P 
Sbjct: 416 VRELVRFHMGEVHATSEVGRGSTFTVRIPA 445



 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 10/242 (4%)

Query: 238 TRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            RKR E+     +  K  FLA + HELR P+  I    E++   + G   +    ++I  
Sbjct: 760 ERKRVEDALADADRRKDEFLAMLGHELRNPMAPICVAVELLRRRSHGGPPD----QHIEV 815

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I R  + L+ L++++LD+SRI  G+ EL +  I +   V   +   + + + +  +I   
Sbjct: 816 IARQTRTLMRLVDDLLDVSRITRGKIELRKERIDVKAAVARAVESTREQIEARRHQIRLV 875

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +  +   V  D+  + Q+++NLL+NA K+T  GG + VTV    G    + ++D+G GI+
Sbjct: 876 LPAAAVQVLGDDVRLEQILVNLLTNACKYTDPGGHIGVTVEQR-GGQVELRVRDDGIGIS 934

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
              +P V   F Q   ++  A  G+G+GL I + ++A HGG     S    +G E I  L
Sbjct: 935 REVLPHVFELFHQADRSLDRAPGGLGIGLTIVRDLVALHGGSIEATSPGPGQGSEFIVRL 994

Query: 473 PN 474
           P 
Sbjct: 995 PV 996


>gi|134292078|ref|YP_001115814.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135235|gb|ABO56349.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 603

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 178/452 (39%), Gaps = 17/452 (3%)

Query: 28  PSKMDFDREIITLH-VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
           P       ++  ++ + +L      L    L+V+              W    +A   A+
Sbjct: 5   PESPIAAEQLKLVYGIVTLSVCGGTLLAATLVVSLERLGRVDPLAGAAWLSYIVACSTAH 64

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
             L  +   S  +      W    +    A G+ W   ++        E  ++  +ATL 
Sbjct: 65  ACLAWRYHRSANRDTRRSRWAAGFVACSTAAGIGWGWSSIELAKGRGFEVESLAVTATLG 124

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +      +    LP A      P  V     A +S + +  + A M+   +    Y+   
Sbjct: 125 VVAGAVPVFGTYLP-AFLAFLLPATVPYVVAAALSDNRVQQATAPMMFLFVCVIAYLGLL 183

Query: 207 LFKSNVKILSCQAEKD----DLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259
             +S  + +  +   +    DL A    AK L+D     ++ AEE NLAKSRFLA+ SH+
Sbjct: 184 ANRSAAQNIRLRFRAEQLARDLRARNRTAKRLADDLLRQKQIAEEANLAKSRFLAAASHD 243

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LR P +A+      +     G   +    + +  I RS   L +L   +LD+SR++AG  
Sbjct: 244 LRQPSHALSLLVGALR----GTKTDAERAQILVQIERSTDALDSLFGALLDVSRLDAGVV 299

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++    + +  ++        L A  KN+ + +   P  + V  D   + +++ NL+SNA
Sbjct: 300 DVHRRPVHVDAVLEHACTDHMLDAAAKNLTLTRV--PCRAIVDTDPVLLERIVRNLVSNA 357

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           V++T   GR+ V      G    I + D G GIA  ++  V   + Q     +    G+G
Sbjct: 358 VRYTDA-GRIVVGCRRR-GARVAIQVWDTGRGIAADQLELVFQEYYQVGNPERDRANGLG 415

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           LGL I + +      +  +RS    G      
Sbjct: 416 LGLAIVRRLADLLECELKVRSAPGRGSCFEVW 447


>gi|296503742|ref|YP_003665442.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296324794|gb|ADH07722.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 458

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDAIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 613

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHELRTPL ++  + E +        + E    ++         ++
Sbjct: 374 EKNEQERREFVSNVSHELRTPLTSMRSYIEALSEGAW--QDPEIAPNFLKVTLDETDRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSS 360
            +IN++L LSR+++G  +L    I+  ++V   +    +    +N +   + +       
Sbjct: 432 RMINDLLSLSRMDSGNAQLQLEYINFNELVSFVLDRFDMMVTNENKKYVIRREFTKRELW 491

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+++NA+K++  GG + V +  T      +SI D G GI + ++  +
Sbjct: 492 VEVDTDKMIQVIDNIMNNAIKYSPDGGVITVKLMETHNN-IVLSINDQGLGIPKKDLTKI 550

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A    + G GLGL I++ ++ +HGG     S+   G     +LP      
Sbjct: 551 FDRFYRVDKARARQQGGTGLGLAISREVIKSHGGAIWAESRENRGSTFYIMLPYEPYEE 609


>gi|228928290|ref|ZP_04091331.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228831337|gb|EEM76933.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 448

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I +A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIGIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    +N E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMNVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|229145815|ref|ZP_04274195.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
 gi|228637646|gb|EEK94096.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
          Length = 448

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     KI      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYKIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNNGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + SK  EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|225567986|ref|ZP_03777011.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
 gi|225163274|gb|EEG75893.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
          Length = 1194

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N+AKS FL+ MSHE+RTP+NAI+G S +         ++E  ++ I  I  S + LL+LI
Sbjct: 674 NVAKSDFLSRMSHEIRTPMNAIIGMSTIAAQSIG---DDEQIEDCISKIGISSRFLLSLI 730

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILD+SRIE+G+  L    I   + +     +   +A  KN++    IDP L+  +  D
Sbjct: 731 NDILDMSRIESGKMLLKSERIPTEEFLNGINSICYSQAAVKNVDYECIIDPVLADYYVGD 790

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTV 420
              ++QV++N+LSNA+KFT  GG+V  +                + D G G+ E  +P +
Sbjct: 791 AMKLQQVLINILSNAIKFTGEGGKVTFSAAERRKTKTDAVLRFIVNDTGVGMNEDFLPHI 850

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              F Q S    +   G GLGL I+++I+    G+  +RS    G E   
Sbjct: 851 FEPFSQESTGTTALYGGTGLGLAISKNIVDLMDGKITVRSIKGIGTEFTV 900


>gi|218247894|ref|YP_002373265.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
 gi|218168372|gb|ACK67109.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
          Length = 680

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L  E  KE++   +     L  
Sbjct: 415 ELNAAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTEEERKEFLETANHETDRLTR 473

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ +       + L  ++ + +   QL A++K +E+  + + +LS V  
Sbjct: 474 LVNDVLDLSRLESSKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQPEGNLSPVLG 532

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEG 415
               + QV+ NL+ N++KFT  GG++ +      G            + I D G GI   
Sbjct: 533 HYDLLLQVMTNLVGNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEISDTGIGIDPE 592

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   + + F +         +G GLGL I ++I+  H     + S++  G      L
Sbjct: 593 DQEAIFSRFFRVEN-RVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGTTFWFDL 648


>gi|46580686|ref|YP_011494.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450105|gb|AAS96754.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 733

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 21/332 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F         F+ VV      AI         +A ++   + F    +  L ++  + ++
Sbjct: 250 FSYRKVGHHPFWVVVGLALDDAIQPWFRNAAYVAVIVVAFVVFTALSSRSLRRALQQEVA 309

Query: 217 CQAEKDDLIAELEVAKSL-----------SDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +    ELE   +              E +++A+  N AKS FLA+MSHE+RTPLN
Sbjct: 310 ARNAVERARNELETRVAERTALLEDSNLHLREAKEKADNANAAKSAFLANMSHEIRTPLN 369

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +LG  +++E   +         EY+G   RSG+ L +L+ +ILDLSRIEAG+  L+E  
Sbjct: 370 GLLGMLDLLEATGLDAG----QAEYLGMARRSGRRLTDLLGDILDLSRIEAGKLVLAEQP 425

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            +L D++          ++EK + +   +D        D   +RQ++LNL+ NA+KFT  
Sbjct: 426 FTLSDVLASIRETFAPLSREKGLPLEFALDAVPGPFLGDAVRVRQILLNLVGNAMKFTNR 485

Query: 386 GGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G++ + V                + D+G GI E ++ ++   F Q    +    QGVGL
Sbjct: 486 -GQMKLEVKTLLPMPDGRARILFMVHDSGCGIPEEQVGSICEPFTQVEAPLTKRYQGVGL 544

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL I ++++  + G   + S++  G  V   L
Sbjct: 545 GLAITRTLVHAYDGTLTVDSQVGVGTSVYLTL 576


>gi|284929545|ref|YP_003422067.1| GAF sensor hybrid histidine kinase [cyanobacterium UCYN-A]
 gi|284809989|gb|ADB95686.1| GAF sensor hybrid histidine kinase [cyanobacterium UCYN-A]
          Length = 757

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 6/276 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   L+++ +     Q EK  L  ++        +T   ++  N +KS FL +MSHELR
Sbjct: 335 HLAVALYQAQLYS-QVQKEKYVLKQKVIKRTQELCDTLVASQAANYSKSEFLGNMSHELR 393

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPL  I+G S  +    +    L+ E  K Y+  I  SG++LL +INEIL+ S ++ G+ 
Sbjct: 394 TPLTCIIGLSGTLLYWSKENSTLSLEKRKHYLATIQNSGENLLQIINEILEYSNLQTGKC 453

Query: 320 ELSESAISLIDIVRECIIML--QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            L+    SL DI +  +  +  +   +  N+++  +I+    +  AD   M+ ++  LL+
Sbjct: 454 LLNIQEFSLSDIAKNILQKVYKEEVHRHINLKLDLRINSIEDTFLADPVKMKHILYYLLN 513

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT   G V + V        +  ++D G GI   +IP +   F +     K    G
Sbjct: 514 NALKFTPENGTVILRVWRHREEVVW-QVEDTGIGIKTEQIPLLFKLFQKLENHRKRVYGG 572

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL + + ++  H G   + S + +G      +P
Sbjct: 573 TGLGLALTKQLVELHSGTIEVDSLVNKGSIFTIRIP 608


>gi|213581536|ref|ZP_03363362.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 809

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 158 LHGPGWSLVTLY-PYGNLHNRILKTILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 211

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 212 LWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 271

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 272 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 327

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 328 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 387

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 388 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 445

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 446 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 501

Query: 475 TRVLNFI 481
                  
Sbjct: 502 QEYQPPQ 508


>gi|294624915|ref|ZP_06703570.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600794|gb|EFF44876.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 726

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYHHTHGDTLMATWLILVGELVVSL 64

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +++     G    +          P          + I  
Sbjct: 65  GLMVAILLRPQVSHTRRLIGMVLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 117

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   S ++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 118 GLRYGSPYLRAATAMASLSFLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 177

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 178 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 209

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 210 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 265

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           +++    ++LQ +A+ + ++   ++   +  +   D   +RQV+LNLL NAVKFT   G 
Sbjct: 266 EMIGSVNMILQPQAKTRGLDYGTEVATDVPDLLKGDTGHLRQVLLNLLGNAVKFT-EHGH 324

Query: 389 VHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG G         ++D+G G+     P +  +F Q  + +    +G GLG  
Sbjct: 325 VLLRVARLSGNGADTVRLRFDVEDSGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 384

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG          G      LP  
Sbjct: 385 IAKGLVEAMGGAIGFAPNPSGGSVFWFELPLE 416


>gi|320155983|ref|YP_004188362.1| putative sensor/response regulator hybrid [Vibrio vulnificus
           MO6-24/O]
 gi|319931295|gb|ADV86159.1| probable sensor/response regulator hybrid [Vibrio vulnificus
           MO6-24/O]
          Length = 571

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               E RKRAEE   A   F+A ++HELRTPLN +LG +E++    +    N+  + Y+ 
Sbjct: 192 ERETELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLGNTYL----NDEQQLYLR 247

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           ++ + G+ L  +IN++LD S++ AG  E+        ++    + +   +A EK I    
Sbjct: 248 NLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIVGIFAAKASEKQIGFHI 307

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           +    +   V  D + ++Q+++NL+ NA+KFT   G V     W       + I+D G G
Sbjct: 308 EKQFGMPSCVCGDVERIKQILVNLIGNAIKFT-QHGAVTFRTHWQ-DDVLSVEIEDTGIG 365

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IAE    T+   F Q   + K   +G GLGL I Q++    GG+   RS+L +G      
Sbjct: 366 IAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEIGFRSELGQGSCFHFA 425

Query: 472 LPNTRVLNFIPEDNHESTQ 490
           +P       + E + E  +
Sbjct: 426 IPLPASDEPLLEPHTEQVE 444


>gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 421

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 3/239 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+A++SHELRTPL+   G+ E +      P  +    E    + +  + 
Sbjct: 186 RLRQLEEVRREFVANVSHELRTPLSIFHGYLENLLDAPSMPRKD--QTEIFEILRKHSRR 243

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++L L+R+E+ + +++  ++ L  ++R        +   K + +  +    L  
Sbjct: 244 LNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQKLANKKLALQIEAHDDLPR 303

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD + + QV+ NLL NAVK+T  GG + +           + ++D+G GI   ++P +
Sbjct: 304 ISADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQ-NGHVEVRVEDSGQGIPPADLPHI 362

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F +   A    + G GLGL I + I+  HGG     SK  +G  +I  LP  +   
Sbjct: 363 FERFYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESKYGKGTTIILHLPLDKGEE 421


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FL  MSHELRTPL+ ILG  E +      PL+    +  +  I RSG+ L  L++++LD
Sbjct: 194 EFLTVMSHELRTPLSLILGPLESLLSSRDEPLS-PRVRADLELIQRSGRRLRRLVDDVLD 252

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
             +IEAG+ ++   A+ + ++V + +   +  A    +++  ++DP L  V AD + + +
Sbjct: 253 HQKIEAGKMQIDWEAVDVGELVSDMVEEARPAAARGGLDLSIRVDPELRRVPADRRKLEK 312

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           + LNLL NA+KFT  GGRV V +         +S++D GPGI       +   F Q   +
Sbjct: 313 IALNLLGNALKFTPPGGRVTVDLRAL-DGLFELSVEDTGPGIPADRRHLLFQRFQQIDAS 371

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN------TRVLNFIPED 484
                +G G+GL +A+ +    GG   + S+   G      LP        R     PE 
Sbjct: 372 ATRKHEGTGIGLSLAKELTELMGGAVGVESEPGVGSRFFVRLPRAADFLAARRATAAPEP 431



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 112/288 (38%), Gaps = 21/288 (7%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE--NLAKSRFLAS 255
                      + +   L   A+ D+L A LE       E ++   +     A    +A 
Sbjct: 579 LELRARVRAAERLHRAYLELAAKNDELAAALEQ----LSEAQQELLQAGKMAAIGTLVAG 634

Query: 256 MSHELRTPLNAILGFSEVIELE---TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +SHE+  P++AIL  ++++        G  +  +  + +G I R      +L+  +L+ +
Sbjct: 635 LSHEMNNPVSAILMNAQLLLRRHRKGHGLPDEASLLKALGTIERQAIRCSDLVTALLEYA 694

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQV 371
           R   G+  +      +   +R  + +   RA+E+ + +       +L  V  +   +   
Sbjct: 695 R---GK-PIGREPCDVRAALRRAVDLSAPRARERRVHLETDGNSSALPEVLVNASQLESA 750

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +LN++ NA+  +  G  V V           G  I + D+G GI   ++  +   F    
Sbjct: 751 LLNVIGNALDASPHGSAVVVEARPRPRGDIHGVEIDVHDHGCGIRAEDLSRIFEPFF--- 807

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              K   QG GLGL +    +  H G   I S   EG  V   LP  +
Sbjct: 808 -TTKPPGQGTGLGLSLTHRFIEEHQGSIRIESAPGEGTTVRMWLPARQ 854


>gi|254241747|ref|ZP_04935069.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
 gi|126195125|gb|EAZ59188.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
          Length = 741

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A+E N AKS FLA+MSHE+RTP+NA++G  E++          
Sbjct: 224 ITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLA---PE 280

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   + +   L  LI +ILD+++IE+G   L+   + L  +V     M +  A+
Sbjct: 281 QRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLAR 340

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D +    V  D    +QV+ NL+SNA+KFT   G+V + +   S      
Sbjct: 341 QKGLRLVLELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGRA 399

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 400 IVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S+  +G  V   L   +    +PE
Sbjct: 459 SEPGKGTRVSLDLLLRQCGPKMPE 482


>gi|14600272|gb|AAK71320.1|AF393849_2 sensor protein CovS [Streptococcus mutans]
          Length = 450

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 8/226 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +      +   +I         ++ +I ++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDDGALTESVAPS---FIKVSLDETNRMMRMITDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           SRI+     L     +    +   +         ++  K  EI +        +  D   
Sbjct: 268 SRIDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDK 327

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           M QVI N+L+NA+K++  GG+V VT+  T+     +SI D G GI + ++P +   F + 
Sbjct: 328 MTQVIDNILNNAIKYSPDGGKVTVTM-QTTDTQLILSISDQGLGIPKKDLPLIFDRFYRV 386

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A+ G GLGL IA+ I+  H G     S+  EG     +LP
Sbjct: 387 DKARSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432


>gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 581

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP+ ++   +E ++       + +    +I  IH     
Sbjct: 352 ELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGA--ASDPDVAAGFIDKIHLEVDK 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+ DLS IE+G+  L+     +   ++     L  +A+   I +  ++  +L  
Sbjct: 410 LAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPQ 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE  + QV++NL+ NA+KFT  GG++ + V  T  +   + + D+G GI E ++  V
Sbjct: 470 VRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGV-RTQSQTLVVYVTDSGIGIPEDDLTRV 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +      G GLGL I++ I+  HGG     S   +G      LP  
Sbjct: 529 FERFYKVDKSRSG--GGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581


>gi|298480193|ref|ZP_06998391.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298273474|gb|EFI15037.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1365

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 777  FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 826

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 827  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 874

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + + + +++++   + +  AQ++
Sbjct: 875  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKR 932

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 933  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 991

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G  ++ S+  +  
Sbjct: 992  DSGIGMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTIMVASEPAQYT 1047

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1048 EFKVTLPA 1055


>gi|260642402|ref|ZP_05415738.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622214|gb|EEX45085.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 613

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 135/312 (43%), Gaps = 13/312 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
               P  +  S + I             + +A + F  +   LF S       +  KD+L
Sbjct: 310 WGLDPKALPFSVELINQPVSFYQQYTYQIWSACTLFVVLVLGLFISLFYYFRTKRLKDEL 369

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +     +       + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    +     
Sbjct: 370 L----RSDKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VEGSTE 422

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ + R+ +  +    Q
Sbjct: 423 EERQSYFQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDIVLLCRQVVASVSFSRQ 482

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
             + +           +  D + M+QVI+NLLSNA KFT   G++ +             
Sbjct: 483 SSDNQFLFTTSFETYRMETDIQRMQQVIINLLSNADKFTKK-GKITLDFSVDEKTGMAVF 541

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+ D G GI + +   V   F +         QG GLGL I + I++   G   I     
Sbjct: 542 SVTDTGCGIPKEKQKLVFERFEKL----NEYAQGTGLGLSICKLIVSKWKGAIWIDPDYT 597

Query: 464 EGVEVIAILPNT 475
            G   I   P  
Sbjct: 598 GGARFIFSHPLK 609


>gi|237719085|ref|ZP_04549566.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451464|gb|EEO57255.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 772  FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 821

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 822  ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K  +  ++++G+ LL+++N++LD  + EAG   +  + + + +++++   + +  AQ++
Sbjct: 870  QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKR 927

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 928  AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL-WTEGDTYGFTVR 986

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G G++  ++  +   F Q     K    G G+GL + + ++  H G  ++ S+  +  
Sbjct: 987  DSGIGMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTIMVASEPAQYT 1042

Query: 467  EVIAILPN 474
            E    LP 
Sbjct: 1043 EFKVTLPA 1050


>gi|28898650|ref|NP_798255.1| hypothetical protein VP1876 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364916|ref|ZP_05777487.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
 gi|260879684|ref|ZP_05892039.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|260898843|ref|ZP_05907284.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|28806868|dbj|BAC60139.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086698|gb|EFO36393.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|308093405|gb|EFO43100.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|308111679|gb|EFO49219.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
          Length = 566

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L F   +         K +   ++    +    ++     E RKRAEE   A   F
Sbjct: 149 VVGELIFSVSLEQIEQAFISKQMELVSDLVHGVISRHLSLEREVELRKRAEESEKATKEF 208

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A ++HELRTPLN +LG ++++    +G    E  ++Y+G++ +SG  L  +IN++LD S
Sbjct: 209 VAMINHELRTPLNGVLGSADLLSKTQLG----EDQRQYLGNLIQSGDLLRVIINDLLDFS 264

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371
           ++ AG  E+ +   +  D+ +    +   +A EK I         +   +  D + + Q+
Sbjct: 265 KMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQI 324

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           ++NL+ NA+KFT +GG V + V W      +  ++D G GI      ++   F Q   + 
Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-NGTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSA 382

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           K + +G GLGL I ++++    G+    S+ R+G      +P   
Sbjct: 383 KRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPLKE 427


>gi|150392094|ref|YP_001322143.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951956|gb|ABR50484.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 627

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           + +       + +L I L+  L ++++     +  + + N+   +    ++ L    +  
Sbjct: 281 LLMFFGVFFLLLILVIRLSYGLVSSMNKLVQTSKDIMQGNLNAKTNFTSENPLAIVGQTF 340

Query: 232 KSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN--NET 286
             +++E  +R    EE N  K +FL+++SHEL+TPLN ILG ++++E      +   N  
Sbjct: 341 DQMTEELNQRIKEIEEYNELKDQFLSTVSHELKTPLNIILGSNQLMEQLDHNNMESWNVN 400

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+Y+    ++   LL LIN ++D+++ E            +   V +  + +   A  K
Sbjct: 401 IKKYLKMQKQNCYRLLRLINNLIDVTKAENHHLRAHPINRDITKTVEDITMSIVGYADLK 460

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           NI +    +     +  DE  + +++LN+LSNA+KFT  GG + VT+ +       ISIK
Sbjct: 461 NINVVFDTEVEEKIMSFDEDLIERIMLNILSNAIKFTGEGGEIQVTI-YDRKEIIAISIK 519

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GI E +   +   F Q    +    +G G+GL + + ++  H G+  + SK  EG 
Sbjct: 520 DNGIGIPEDKTEIIFDRFAQVDSTLSREFEGSGIGLALVKYLVELHDGKISVVSKFGEGS 579

Query: 467 EVIAILPNT 475
           E I  LP  
Sbjct: 580 EFIIELPVK 588


>gi|206974651|ref|ZP_03235567.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206747294|gb|EDZ58685.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 458

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSMEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|42782325|ref|NP_979572.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42738250|gb|AAS42180.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 458

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSMEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--IVIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 467

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 11/280 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   L   T +   + K +  + + + E D++    +    +S+E  K     +  K+ F
Sbjct: 192 IVIPLQEVTRVAGQMAKGDFSVKATKREDDEVGKLADTLNYMSEEILK----SDKMKNDF 247

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           ++S+SHELRTPL +I G+ E +  E +   + E  KE +  I +    ++ L+ E+LD S
Sbjct: 248 ISSISHELRTPLTSIKGWGETLFGEEL--QDREEVKEGLNIICKETDRMIGLVEELLDFS 305

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R ++GR +L+   I++  ++ E I    +R ++K IE+  + + S+  +  D   ++QV 
Sbjct: 306 RFQSGRIKLNLEKININSLLTEVIQQYAIRVRQKKIEMPYQFNDSVPEITGDRNRLKQVF 365

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NLL NAVKFT   G+V ++  + S     I   ++G GI   ++P V   F + +    
Sbjct: 366 INLLDNAVKFTPFCGKVQISTEY-SEGTIKIDFVNSGEGIRSEDLPRVTEKFYKANANR- 423

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G GLGL I + I+  H G   I S   +   V  IL
Sbjct: 424 ---PGSGLGLAIVKEIINLHQGDLHIESIPGQNTRVTVIL 460


>gi|83951998|ref|ZP_00960730.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
 gi|83837004|gb|EAP76301.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
          Length = 347

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL A++GF E ++    G  +      ++  ++     + 
Sbjct: 112 ERAGQMRRDFVANVSHELRTPLTAMMGFIETLQGPARG--DTAASDRFLATMYSEANRME 169

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E+         + L  +VR     L+   +   + +  ++  S + + 
Sbjct: 170 RLVRDLLALSRVESEERVRPNQTVDLAGLVRSVAHTLRPLLENSEVTLDLELPQSDTELP 229

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGE 416
            D   +RQV+ NL+ NAVK+   G  V VT+               +S++D GPGI+E  
Sbjct: 230 GDADQLRQVVTNLIENAVKYGGKGKTVTVTLSHAENDPMLRRDALLLSVRDEGPGISEIH 289

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           IP +   F +          G GLGL I + I++ H G+  I S+L +G     ILP 
Sbjct: 290 IPRLTERFYRVDSHRSREMGGTGLGLAIVKHIVSRHRGRLRIESELGQGSVFRVILPR 347


>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1156

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 27/325 (8%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           V + T   +   +L +  A +       F  I        + +L        +  +L+ +
Sbjct: 385 VGIVTSRWVVRPILQLKDAAIAL-EKGQFDQIVNQERSDELGVLVKAFNN--MARQLQES 441

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +  +      +  +  K+ FLA+ SHELRTPLN ++  +E +     G L ++     +
Sbjct: 442 FATLEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANAN-L 500

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ L NL+N++LD S+++    EL    +SL +I    +   Q    +K +++ 
Sbjct: 501 AIIASSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLI 560

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIK 406
             I   +  V ADE  ++Q+I NL+ NA+KFT   G+V V+               I++ 
Sbjct: 561 NSIAADMPLVDADENRLQQIIYNLIENAIKFT-ESGKVEVSAEQLPVSNDELPMLVITVS 619

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLRE- 464
           D G GI   ++  +  SF     +      G GLGL + + ++  HGG+  +RS +L E 
Sbjct: 620 DTGIGIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRSLRLGEA 679

Query: 465 ---------------GVEVIAILPN 474
                          G +    LP 
Sbjct: 680 QCCLGGSPKRSQNKSGSQFTFTLPV 704


>gi|149927944|ref|ZP_01916194.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149823383|gb|EDM82616.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 755

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 144/336 (42%), Gaps = 13/336 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              +         AL+    +   +L+++     A  +     I      ++ ++     
Sbjct: 175 RNVLLAVILIFPAALALWLFIRKTILELNALTDFAQRMVKDQGIEQATSPTSRELAMLHH 234

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +     L       +  + +A++ N  KS+F+A+MSHE+RTPLN ILG +E+I   + 
Sbjct: 235 TLNWASVTLRKKNRALEAAKLKADKSNDLKSQFVANMSHEIRTPLNGILGLTEIILSNSA 294

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E  +  +  I  S +HLL ++N+ILD S+I+A   ++      L   V+  + M+
Sbjct: 295 ---LAEKPRRNLELIQLSAEHLLRVVNDILDFSKIDANCLDMDPQPFELRPNVQAMVKMV 351

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                + ++     IDP +   ++ D   + QV+ NLLSNA+KFT   G+V +T+    G
Sbjct: 352 SSAYAKPHVATVLDIDPDVPNYLFGDCPRIMQVLNNLLSNALKFT-QHGQVSLTIKTKQG 410

Query: 399 RG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                      + +++D G GI+E     +  +F Q          G GLGL I Q ++ 
Sbjct: 411 TEKTQKSKSKIHFAVRDTGMGISESARTEIFKAFSQAEPGTARKYGGTGLGLTITQRLLE 470

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
               +  + S+   G E    L    V      D+ 
Sbjct: 471 LMNSRIHLWSEEGVGSEFSFTLELPIVEEQKTTDSE 506


>gi|294849847|ref|ZP_06790587.1| sensor protein kinase walK [Staphylococcus aureus A9754]
 gi|294823395|gb|EFG39824.1| sensor protein kinase walK [Staphylococcus aureus A9754]
          Length = 608

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A+  +I   + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAK--DITFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1092

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 125/265 (47%), Gaps = 10/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  + L  + ++ A+E N AKS FLA +SHE+RTPL+  +G  E++    +G    
Sbjct: 489 INEHKANEMLLIQAKQTADEANRAKSIFLAIVSHEIRTPLHGAMGHLELLARSPLGF--- 545

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E++  I RS   LL+L+N++LD +++EA   +++   +S  ++   C         
Sbjct: 546 -EQAEWVDMIRRSFDALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSFGASIL 604

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           + ++  +   DP L   V  D++ + Q++ NLL NAVKFT   G + ++      +    
Sbjct: 605 QNDVAFYCMTDPDLDGVVEGDDQRLAQILQNLLGNAVKFTER-GSIMISSRCLKQQGDTI 663

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                + D G GI       +     Q   +I     G GLGL + +++    GG+  + 
Sbjct: 664 WARFEVADTGIGIPASMQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGRISVS 723

Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484
           S+  +G      LP  R    +P D
Sbjct: 724 SEPGKGSVFRVDLPFKRNARPLPAD 748


>gi|152988149|ref|YP_001351034.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150963307|gb|ABR85332.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 750

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 165/403 (40%), Gaps = 17/403 (4%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +V    +        R  L   +    +   L  +            ++  + L      
Sbjct: 107 RVERFPLSYQPPGGERRQLGELE----IAIDLAAVYRRLASGGLASLLWMGSFLCGLAVA 162

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +     L              ++   +     LD +         +    +        
Sbjct: 163 LSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKADRERDEI-DAVAAALEDMRQALR 221

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                  A++D+L  ++E   +     + +AE  + AKSRFLA+MSHE+RTPLN ILG +
Sbjct: 222 TDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMA 281

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++   ++G  +    ++ +  +  +G+ LL ++NE+L  +R+E           SL  +
Sbjct: 282 ELLREASLGERD----RQRLRALATAGEGLLAILNEVLHFARLEEAPDAPEAVDFSLRSL 337

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + + + +L+ RA+E    +   +DP +       E+ +RQV+ NLL NAVKFT   G V 
Sbjct: 338 LEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEA-GEVR 396

Query: 391 VTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           V V   +    G    +S+ D+G GI E     +   F QG  A+     G GLGL I++
Sbjct: 397 VRVERLARNAGGERLRLSVADDGIGIPEEMHERIFERFTQGGDAVTRRYGGTGLGLAISK 456

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
            ++   GG+  + S++ +G      +     L  +P     + 
Sbjct: 457 RLVEALGGRIGVESQVGQGSTFWFEI--ELALASLPGATPPAA 497


>gi|257060785|ref|YP_003138673.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
 gi|256590951|gb|ACV01838.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
          Length = 680

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 13/298 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +     G   ++   F        +  V+IL  Q           +A ++ D TR+  
Sbjct: 356 DPISEPSEGQQGSSTGEFRITLTQPTQRIVRILLTQVFDQQRATVKGIAMTVQDITREV- 414

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E N AKS+F++++SHELRTPL  I  F E +  E    L  E  KE++   +     L 
Sbjct: 415 -ELNAAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTEEERKEFLETANHETDRLT 472

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++LDLSR+E+ +       + L  ++ + +   QL A++K +E+  + + +LS V 
Sbjct: 473 RLVNDVLDLSRLESSKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQPEGNLSPVL 531

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAE 414
                + QV+ NL+ N++KFT  GG++ +      G            + I D G GI  
Sbjct: 532 GHYDLLLQVMTNLVGNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEISDTGIGIDP 591

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   + + F +         +G GLGL I ++I+  H     + S++  G      L
Sbjct: 592 EDQEAIFSRFFRVEN-RVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGTTFWFDL 648


>gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 647

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA MSHE+RTP+N ILG ++ ++ + +  L     +E +  +  SG  LL ++N+I
Sbjct: 270 KSQFLAVMSHEIRTPMNGILGMTQAMQADPLPAL----QRERLDIVAESGAALLTILNDI 325

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLS++EAG+ EL   A  L  ++          A ++ + +   +  +      D   +
Sbjct: 326 LDLSKVEAGKMELESVAFDLGILLGNLRSTYASTADDQGLILALDLGDAAGLYRGDPTRL 385

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ++ NL+SN++KFTA  GR+ +      G+   +++ D G G+    I  +   F Q  
Sbjct: 386 RQILSNLISNSLKFTAR-GRIDIAARR-DGQTLVLTVADTGVGMTTEVIARIFNPFAQAD 443

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            +      G GLGL I   +     G+  + S+  EG     +LP   +   +      +
Sbjct: 444 ASTTRQFGGTGLGLSIVHELTRLMQGRIDVDSRPGEGSRFTVVLPLPWLGPAVGTPAPSA 503

Query: 489 TQYK 492
           +  +
Sbjct: 504 SDVR 507


>gi|114571161|ref|YP_757841.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341623|gb|ABI66903.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 554

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 151/379 (39%), Gaps = 20/379 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W    + G +A+ L +    +    T              ++A + S  +        ++
Sbjct: 24  WSPAKIAGLVAVSLFYGYGFIAWRTTQYRWIAHALILTAQIMAFAASLTNGG---LTGYV 80

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-ITYHLFKSNVKILSCQAEKDDL 224
           +   ++  L+    ++     I  A  +        + I   +  +     + +     L
Sbjct: 81  APMQIIAPLAAGFFLTSRSAIIYGAVSVGFFGLLLVFDINGWVSPTPYSAEAERVAALFL 140

Query: 225 IAELEVA--------KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           ++   V             +     A + + AKS FLA+MSHE+RTP+N +LG  ++   
Sbjct: 141 LSTTTVLGLVCVIGFVRALERMLVAARQADAAKSAFLANMSHEIRTPMNGVLGLLDLARN 200

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G L+ E     +   H S   L+ ++N+ILD+S+++ G   + E    L  +  E I
Sbjct: 201 GPDGRLDAEG----VVTAHASATALVTVLNDILDVSKLDQGAIVIREEPCDLRGLCEEVI 256

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +  ++   ++I +    D SL + +A D   +RQV+ NL+ NAVKFT   G V + V  
Sbjct: 257 SLFGVQVSGRDIALVLDYDDSLQNCYALDAVRLRQVMWNLVGNAVKFTER-GEVRLAVRP 315

Query: 396 TSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             G G      + D G G++      +   F Q          G GLGL I + +    G
Sbjct: 316 EPGGGGGLQFEVSDTGIGLSAEARERIFDRFAQADDTTTRDFGGTGLGLTICRELTRLMG 375

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+  + S+   G      L
Sbjct: 376 GELAVESEAGAGSRFHFRL 394


>gi|294506481|ref|YP_003570539.1| Sensor kinase [Salinibacter ruber M8]
 gi|294342809|emb|CBH23587.1| Sensor kinase [Salinibacter ruber M8]
          Length = 486

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 138/346 (39%), Gaps = 7/346 (2%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                 SA L++ +       + L     +     ++     A++   +    +   L  
Sbjct: 146 AALYRPSANLIVQVGQPPPPLYSLAQRSQVVLVLGMILALVLALIGSFIAAYQVTTPLTR 205

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  +        +++ S  AE  DL   L  A     E  +  E     +S F+ +
Sbjct: 206 ISETARRVADGKLTGKIQVESRAAEFQDLAESLNRASDTFREKIEELERMTRLQSEFIGN 265

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE+R P+ +I G+ E +       L++E  K Y      +   L NL N+++D++R+E
Sbjct: 266 VSHEVRNPIFSISGYLEAL---GTPGLDDEQRKMYSEKALTNLNRLQNLFNDLIDIARLE 322

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
                ++ S   L D+V E   ML+ +A+EK   +  + D S   V AD   +RQV+ NL
Sbjct: 323 YKEDLINRSVFDLKDLVDEVAEMLRPKAEEKG--LDLEADVSRFFVHADRSRVRQVLTNL 380

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + N + +T  GG V   V     +   + + D G GI E  +  +   F +         
Sbjct: 381 IENGIAYTG-GGSVRCRVQRRLDK-VRVEVVDTGQGIDEDHLDRIFERFYRVDPDRSRES 438

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            G GLGL I + I+  HG    + S    G      LP       +
Sbjct: 439 GGTGLGLSIVKQILQAHGEDIHVESTKGRGTRFWFELPYEPEPEAV 484


>gi|312112379|ref|YP_003990695.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311217480|gb|ADP76084.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 458

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    + +F+A  SHELRTPL+ IL   E +E+E      NE  ++ +  +    + + 
Sbjct: 224 QEAYHRQRQFVADASHELRTPLSVILSSVEALEMEEELTK-NELTQKLLDRLREEIKRMT 282

Query: 303 NLINEILDLSRIEAGR--YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            L+N++L L+R ++     +L +            + +L+  A +KNI +     P    
Sbjct: 283 KLMNDLLTLARADSAHASLQLVKETFDFRPHAERTLRLLEELASKKNIRMHFH-SPESVI 341

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEI 417
           + AD   + Q++  LL NA+K+T  GG V +++     + Q I   S+KD G GI    +
Sbjct: 342 IAADADKLTQLLYILLDNAIKYTPDGGEVTLSIDIAPFKQQRILTISVKDTGIGIPPESL 401

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F +   A    + G GLGL IA+ I+  HGG   ++S++ +G E I  +P
Sbjct: 402 DRIFDRFYRVDKARSRQQGGHGLGLSIAKWIVDAHGGTIHVQSEVGKGSEFIVKIP 457


>gi|323705668|ref|ZP_08117241.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534886|gb|EGB24664.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 464

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 5/230 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++  SHEL+TPL AI    E +       ++   YKE++ DI+     +  L+
Sbjct: 238 DEERKRFVSDASHELKTPLAAIKALVEPLISS--DNVDISVYKEFLKDINSEVDRMTRLV 295

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           NE+L L++I+  R  +     ++ +I    I  L+  A +K + +  + + ++     D 
Sbjct: 296 NELLVLAKIDKIR-SIENKTENITEIAYNVIENLEAIADQKGVSLIFENEKNI-FADVDA 353

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
               ++I N++ N +K+T  GG V +T+  +  +  YI+I D G GI++  +P V   F 
Sbjct: 354 DRFYRMIYNVVENGIKYTPSGGSVKLTLD-SDDKNVYITISDTGIGISQETLPKVFERFS 412

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +G  A      G GLGL I + I+  H G   ++S + EG      +P  
Sbjct: 413 RGDTARSQKTGGFGLGLAIVKEIVDLHKGHIDVKSTVGEGTVFYITIPVK 462


>gi|121728449|ref|ZP_01681475.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|121629273|gb|EAX61708.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
          Length = 406

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 138/287 (48%), Gaps = 8/287 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + +S    K++L   +E+        +K AE+ N +KS FLA MSHELRTPLN
Sbjct: 3   RFRPLLERAISDIEHKEELQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLN 62

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  E+          E +  +  S + LL +IN+ILDLSRIE+G + L    
Sbjct: 63  AVLGLIDILRGESTSY-----QVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHW 117

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384
           + L   + + ++  +  AQ+K +  + + + +     + D   + Q++ N++ NA+KFT 
Sbjct: 118 LDLEKKLDQSLVYHRQIAQDKGVHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTK 177

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G+V V + +T        +KD G GI +  +  + T F Q   +I     G GLGL I
Sbjct: 178 Q-GQVDVVLDYTKDG-VVFRVKDTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAI 235

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            + ++   GG   + S+   G      +P    L  I +    S Q 
Sbjct: 236 TKHLVELMGGTIQVESEFGIGTTFTLYIPLQSRLKNIKQSASSSQQI 282


>gi|15894190|ref|NP_347539.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023801|gb|AAK78879.1|AE007605_12 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508318|gb|ADZ19954.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 683

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 7/255 (2%)

Query: 224 LIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +    E  K+ ++  RK+ E+    +  +  F +++SHELRTPLN IL  +  +    M 
Sbjct: 405 IRDMTEKKKNEAN--RKKLEQTLYYDKVRKEFFSNLSHELRTPLN-ILASAMQLVRLNMD 461

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             N + +++Y+  ++++   L  +I+ ++D+++I+AG   +    + ++ ++ +  + + 
Sbjct: 462 NDNKDGFEKYLKIMNQNIYRLTKIIDNLIDITKIDAGYLSVDLHTVEIVSVIEDITMSVI 521

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              + K I+I    D     +  D   + +V+LNLLSNAVKFT  GG++ V V +     
Sbjct: 522 EFVKSKGIDIVFDTDVEEKFMPVDSDKIERVMLNLLSNAVKFTPKGGKITVNV-YDKNDS 580

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I +KD G GI +    T+   F Q +  +   ++G G+GL I +S++  HGGQ  + S
Sbjct: 581 IQIRVKDTGIGIPKDMKETIFQRFIQVNKTLIREKEGSGIGLSIVKSLIEMHGGQIRVES 640

Query: 461 KLREGVEVIAILPNT 475
           +L  G E I  LP  
Sbjct: 641 ELNVGSEFIIDLPVR 655


>gi|288905746|ref|YP_003430968.1| essential two-component sensor histidine kinase [Streptococcus
           gallolyticus UCN34]
 gi|306831844|ref|ZP_07465000.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978779|ref|YP_004288495.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732472|emb|CBI14044.1| conserved essential two-component sensor histidine kinase
           [Streptococcus gallolyticus UCN34]
 gi|304426042|gb|EFM29158.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178707|emb|CBZ48751.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+E+  +  F++++SHELRTPL ++  + E ++   +      +   +I         ++
Sbjct: 203 EKEDRERRLFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPS---FIKVSLDETNRMI 259

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPS 357
            +I+++L+LSRI+    +L     +    +   +        Q     K  EI +     
Sbjct: 260 RMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIK 319

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   M QV+ N+L+NA+K++  GG++ V++  T  +   ISI D G GI + ++
Sbjct: 320 SIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQ-LIISISDEGLGIPKKDL 378

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   A   A+ G GLGL IA+ I+  H G    +S   +G     +LP  + 
Sbjct: 379 PLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEKD 438

Query: 478 LNFIPEDNHES 488
                E   E 
Sbjct: 439 SEIYDEWEDEE 449


>gi|225027608|ref|ZP_03716800.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
 gi|224955064|gb|EEG36273.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
          Length = 690

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 133/252 (52%), Gaps = 8/252 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                 ++   ++ ++A+  + AK+RFL +MSH++RTP+NAI+GFS ++E       N +
Sbjct: 287 HRERQYEAELKKSAEQAKNASEAKTRFLFNMSHDIRTPMNAIVGFSGLLEKNL---QNEK 343

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KEY+G I  S   LL +IN+IL+++RIE+G   L   A  +  +      + +   ++
Sbjct: 344 KAKEYLGKIQSSSNLLLMIINQILEMARIESGTAVLQLKAEDMDALFHRVNTVFEEDIRK 403

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----G 400
           KN++ +  +D     V  D+  +++++LN++SNA+K+T  G  ++V +   +        
Sbjct: 404 KNLQYYADLDIRHHYVVCDQTKLQEIMLNIISNAIKYTPEGHSIYVEIHEAASENPSKIH 463

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              S +D G G++E  +P V   F +     ++  QG GLGL I +S++    G   + S
Sbjct: 464 YIFSCEDTGIGMSEEYLPHVYEEFSREHTTTENKVQGTGLGLSIIKSMIELMDGSIQVES 523

Query: 461 KLREGVEVIAIL 472
           +   G +    L
Sbjct: 524 RQGIGTKFTVDL 535


>gi|163849118|ref|YP_001637162.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527091|ref|YP_002571562.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670407|gb|ABY36773.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450970|gb|ACM55236.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 554

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           ++A S +    F+L            + L   A ++  +  ++ A     A  F   I  
Sbjct: 177 VVASSYATARTFILFDTAVAIIISAAIGLFLSARIARRLRRLAHASNRVAAGDFVGSINE 236

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR-------------- 251
                   +       D +++ L   ++  +E  +  +E    +++              
Sbjct: 237 RTRDEIGDLARAF---DQMLSSLRAQRAELEERNRALQESLSRQAQLMEEIVRGKQAEAE 293

Query: 252 -----------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                            FLA+MSHELRTPLNAILG+++++    +    +E + +Y+  I
Sbjct: 294 AERARAAAEAASQAKSAFLATMSHELRTPLNAILGYAQLLH---LSNAVSEPHADYLERI 350

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             SG+HLL LI+++LD +RIE G  EL    +++  +V +   M    AQ  + ++    
Sbjct: 351 LSSGRHLLTLISDVLDFARIEQGALELEYRQVAIAPLVEDVATMTLPLAQRNHNQVITCY 410

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPG 411
              + S+  D++ +RQV++NLL NA KFT   G + + V         G    + D G G
Sbjct: 411 PADIGSIETDDRRLRQVLINLLGNAAKFTER-GTIRLNVVREQRHGIDGIRFDVIDTGIG 469

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   F Q   ++    +G GLGL +++ I+   GG   + S    G      
Sbjct: 470 IPRDKQDKLFKPFSQIDESVTRRYEGTGLGLALSKQIVLALGGTIDVESDFGVGSTFTVW 529

Query: 472 LPNTRVLNF 480
           LP   +   
Sbjct: 530 LPTAPLAAA 538


>gi|160936663|ref|ZP_02084030.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440454|gb|EDP18199.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
          Length = 970

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 125/260 (48%), Gaps = 11/260 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +  K+A+  N A++ F +SMSH++RTP+N I+G + V         N E  +  +
Sbjct: 435 REHLADALKQAQNSNQARTAFFSSMSHDIRTPMNGIIGMTNVALNSL---DNMEKVESCL 491

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  +  HLL LINE+LD+SRIE+G+  L E  + L  ++   I  ++    +K     
Sbjct: 492 NKITAASGHLLQLINEVLDMSRIESGKISLKEENVHLPSMMANLISFIRPDMDKKRQSFE 551

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406
            K       +V +D   +++++LNLLSNA+K+T  GG + + +  T+           ++
Sbjct: 552 LKSQILEHDTVISDGLHLQKILLNLLSNAMKYTQAGGTISMQITETNVDADTIRLRFVVE 611

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG G+    +  V   F +   +  S   G GLGL I +SI+    G   + S+   G 
Sbjct: 612 DNGIGMTPEFLERVFAPFERAEDSRMSQATGTGLGLAITKSIVDMMEGDIYVESEKDMGS 671

Query: 467 EVIAILPNTRV---LNFIPE 483
                LP       +  +P+
Sbjct: 672 RFTVELPLKLPKLQMQELPD 691


>gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus
           DSM 2380]
 gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 591

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R       +  F+A++SHEL+TP+  I G  E +    M     E    ++  I +  + 
Sbjct: 359 RLHRLENIRRDFVANVSHELKTPITGIKGSVETLLDGAM--ERPEDAVRFLRIIAKQAER 416

Query: 301 LLNLINEILDLSRIEAGR----YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           L  +I+++LDLSRIE G+     ELS + +  + +++  +    ++A++K+IE+      
Sbjct: 417 LNAIIDDLLDLSRIEQGQNDQALELSMAPV--VPVLQAAVHACDMKARDKSIELVLSCAA 474

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            +S+   +   + Q ++NL+ NA+K++  GG V +     + +   I ++D G GI    
Sbjct: 475 EISA-EINPHLLEQAVVNLVDNAIKYSDAGGTVWIEARRDARQTV-IEVRDQGCGIDNEH 532

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +P +   F +   A      G GLGL I + I+  HGG+  + S+  +G     ILP
Sbjct: 533 LPRLFERFYRVDKARSRRAGGTGLGLSIVKHIVQAHGGRVTVDSEAGKGSVFRIILP 589


>gi|78047475|ref|YP_363650.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035905|emb|CAJ23596.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 726

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYHHTHGDTLMATWLILVGELVVSL 64

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +++     G    +          P          + I  
Sbjct: 65  GLMVAILLRPHVSHTRRLIGMVLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 117

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   S ++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 118 GLRYGSPYLRAATAMASLSFLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 177

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 178 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 209

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 210 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 265

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           +++    ++LQ +A+ + ++   ++   +  +   D   +RQV+LNLL NAVKFT   G 
Sbjct: 266 EMIGSVNMILQPQAKTRGLDYATEVATDVPDLLKGDTGHLRQVLLNLLGNAVKFT-EHGH 324

Query: 389 VHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG G         ++D+G G+     P +  +F Q  + +    +G GLG  
Sbjct: 325 VLLRVARVSGNGADTMRLRFDVEDSGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 384

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG          G      LP  
Sbjct: 385 IAKGLVEAMGGAIGFAPNPSGGSVFWFELPLE 416


>gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 521

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FL+ MSHELRTPLNA+LGF++++E + + P  +E+ +  I  I  +G+HLL +I ++
Sbjct: 297 KTEFLSRMSHELRTPLNAVLGFAQLLESDPVEP-PSESQQRRIKLIREAGEHLLQMIGDL 355

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL+RIE+G  EL  +A+ L  +  E + M+   A+   + +        + V AD   +
Sbjct: 356 LDLTRIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTLALADSAPGARVRADGTRL 415

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQV+LNLL+NA+K+   GGRV + +    GR Q +++ D G GIA  E   +   F +G 
Sbjct: 416 RQVLLNLLTNAIKYNRAGGRVELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYRGR 475

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                  +G G+GL + Q ++   GG+  + S+   G      LP  
Sbjct: 476 AVRGR-VEGTGIGLALTQDLVVLMGGRIEVDSEPGRGSSFTVTLPAA 521


>gi|326576541|gb|EGE26449.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           CO72]
          Length = 988

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SFGQG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|283852097|ref|ZP_06369371.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572487|gb|EFC20473.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1340

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 16/250 (6%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            + AK  FLA+MSHE+RTPLNA+LG+ +++  + +        +E +  +  S   LL+LI
Sbjct: 822  SQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRL----EPRQRERLAVVEESAATLLSLI 877

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
            N+ILD S+IEAGR EL   +  L   +   +   ++ A+ K +++   + P +   V  D
Sbjct: 878  NDILDYSKIEAGRMELKNESFDLPACLAAVVKEQEVLARNKGLDLTLAMGPEVPRDVRGD 937

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAE 414
               +RQV+ NLLSNAVK+T   G V VTV  T            +    ++ D G GIAE
Sbjct: 938  GLRLRQVLRNLLSNAVKYTEA-GSVAVTVSRTGELPGPAGEAPRQILRFAVADTGVGIAE 996

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   +  SF Q    +   + G GLGL I + +    GG   + S    G       P 
Sbjct: 997  EQQAAIFDSFTQVDDGLTRRQAGTGLGLAICRRLAGLMGGGVFVESVPGRGSVFWLECPF 1056

Query: 475  TRVLNFIPED 484
                      
Sbjct: 1057 EVAEPATSAA 1066


>gi|325829720|ref|ZP_08163183.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|325488215|gb|EGC90647.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 660

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 48/347 (13%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           N  +  A   SF  +  A+      +M    + +  ++   + F   I     +      
Sbjct: 172 NQAIISAAARSFDQLYKAVGKTRQDTMFTASVLMTAVMVALVLFLAVIKRKNRQ------ 225

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                           +       ++A++ + AKSRFL+++SH++RTPL AI+G  ++  
Sbjct: 226 ------------ERELQESLRCAMEKAQDASEAKSRFLSNVSHDIRTPLTAIMGLVDIAV 273

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                    +  KE    +  S  HLLNL+N++LD+S+IE+G+  L      L  +V   
Sbjct: 274 EHI---DERDRVKECFDKVQLSSHHLLNLVNDVLDMSKIESGQINLCCKPFDLHVVVETL 330

Query: 336 IIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +++ +A  K++     ++D     V  DE  + QV++NLL NAVK+T   G V + V 
Sbjct: 331 GSIVRPQADSKHLTFSVLRVDVEEGLVLGDEMHVNQVLINLLGNAVKYTEPSGTVSLAVE 390

Query: 395 WTSGRGQY--------------------------ISIKDNGPGIAEGEIPTVLTSFGQGS 428
              G  +                             ++D+G G+++  +  +   F +  
Sbjct: 391 ELRGDERVEYAAQRGLSLEPTSHDGFDMCIRLIRFIVEDDGIGMSKEFMSRLFDPFEREE 450

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +  + + +G GLGL I +++    GG   ++S+   G     +LP  
Sbjct: 451 VPTRLSVEGTGLGLSIVKNLADLMGGTVQVQSERGRGSRFTLVLPFE 497


>gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 871

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 10/226 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHE+RTPLNA++G    +    +    +E   EY   I  SG+ LL LI +ILDL
Sbjct: 365 FLAMMSHEIRTPLNAVIG----MSSLLLNSDLSELQHEYATTIGTSGKTLLALITDILDL 420

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           SRIEAG+  L +   SL   + E + ++   A    + +  ++ P L + V+ D   +RQ
Sbjct: 421 SRIEAGQMVLEQQPFSLDTCLSETLSIVAHAATTHGLMLKSQVRPGLPALVYGDVNRLRQ 480

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +++NLLSNA+KFT   G V ++              I ++D G GI+  +I  +   F Q
Sbjct: 481 IVVNLLSNAIKFTRR-GEVVLSAESQPQANGYHHITIQVRDTGIGISAEQIERIFHPFVQ 539

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +      G GLGL I++ +    GG   + S    G      L
Sbjct: 540 ADSSTTRRYGGTGLGLAISRQLAELMGGTLTVTSVPERGSTFTLRL 585


>gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 761

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E     K+ F++++SHELRTPL +I G   +I    +G +     ++ +   H++
Sbjct: 516 ERKRIE---QMKNEFVSAVSHELRTPLTSISGSLGLILNGMLGEVPV-RARDMLVIAHKN 571

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L +LIN++LD+ ++ AG+ +      +++ IV + I  ++  A+   + +       
Sbjct: 572 ALRLAHLINDLLDMEKLAAGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAG 631

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            +SV  D + ++QV+ N LSNAVKF+  G RV + +    GR   +++ D GPGI++   
Sbjct: 632 DASVNIDAQRLQQVLTNFLSNAVKFSPEGSRVILRM-RVQGRELCLAVTDQGPGISDEFR 690

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   F Q   +      G GLGL I++ ++   GG     S   EG    A  P 
Sbjct: 691 TRIFQKFSQADASSSRQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYACFPL 747


>gi|296501408|ref|YP_003663108.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322460|gb|ADH05388.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 463

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|288960055|ref|YP_003450395.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912363|dbj|BAI73851.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1161

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 150/308 (48%), Gaps = 9/308 (2%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L  +   A            K+  +     A   D IA  E   +   + ++ AE  N A
Sbjct: 612 LFILSGVAAWLLVLAQESRRKAEEETGRQTAMLMDEIAAHERTDAALQKAKEVAEAANAA 671

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KSR++  +SHE+R PLNAI G+++++E       + +  ++ +  I RS +HL NLI+ +
Sbjct: 672 KSRYIIGVSHEIRAPLNAISGYAQLLESN-----STQRPQDAVRVIRRSAEHLSNLIDGL 726

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD+S+IE+G   LS   + LID + +   M +++A  K +E      P L   V  D K 
Sbjct: 727 LDISKIESGLRRLSRDKVQLIDFLDQLADMFRIQAAAKGLEFRYARVPHLPAWVHTDSKI 786

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ+++NLLSNAVK+T   G V +TV +   +     I D+G GI E ++  V   F +G
Sbjct: 787 LRQILINLLSNAVKYT-ESGHVALTVRYR-SQIAEFEIADSGIGIREEDLDRVFEPFERG 844

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             A   A  G GLGL I + +    GG   +RSK  EG      L  +  +   P D  E
Sbjct: 845 RGAAVRAVAGTGLGLTITRVLTRIMGGDIALRSKSGEGSVFTVRLLLSEAMQ-RPGDQPE 903

Query: 488 STQYKCYA 495
                 YA
Sbjct: 904 RRAVTGYA 911


>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
          Length = 1156

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 27/325 (8%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           V + T   +   +L +  A +       F  I        + +L        +  +L+ +
Sbjct: 385 VGIVTSRWVVRPILQLKDAAIAL-EKGQFDQIVNQERSDELGVLVKAFNN--MARQLQES 441

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +  +      +  +  K+ FLA+ SHELRTPLN ++  +E +     G L ++     +
Sbjct: 442 FATLEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANAN-L 500

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG+ L NL+N++LD S+++    EL    +SL +I    +   Q    +K +++ 
Sbjct: 501 AIIASSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLI 560

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIK 406
             I   +  V ADE  ++Q+I NL+ NA+KFT   G+V V+               I++ 
Sbjct: 561 NSIAADMPLVDADENRLQQIIYNLIENAIKFT-ESGKVEVSAEQLPVSNDELPMLVITVS 619

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLRE- 464
           D G GI   ++  +  SF     +      G GLGL + + ++  HGG+  +RS +L E 
Sbjct: 620 DTGIGIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRSLRLGEA 679

Query: 465 ---------------GVEVIAILPN 474
                          G +    LP 
Sbjct: 680 QCCLGGSPKRSQNKSGSQFTFTLPV 704


>gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
 gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
          Length = 1633

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 183  HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRK 240
             +  IS   ++         +     +++++ +     +  +  E         +   R+
Sbjct: 1334 GMPIISQGKLIGIVYLENDLVYDAFKENHLETIRILCAQAAISLENAYLYEDLQQSQARE 1393

Query: 241  RAE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +AE E N  KSRF++  SHE RTPL AILG +E+I+    G   N     Y+  I ++ +
Sbjct: 1394 QAEREINELKSRFISMTSHEFRTPLTAILGTTELIKHYGQGWDTN-KQHTYLDRIQKNVK 1452

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            H+  L++++L LS+ +  + E +   I+L       +   QL  +    +I  +   +  
Sbjct: 1453 HMTGLLDDVLVLSKADVNKVEFNPKLINLEVFCSSLVEEFQLNTKRDQ-QIEFEFFWNQH 1511

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             V++DEK +RQ++ NLLSNA+K++     V   V        +  IKD G GI E +   
Sbjct: 1512 EVYSDEKILRQILSNLLSNAIKYSPESTSVRFQVNVNEEEATFF-IKDQGIGIPEADQQH 1570

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  SF + +       QG GLGL I +  +  H G     S   +G   I  LP
Sbjct: 1571 LFESFHRATNV--GQIQGTGLGLAIVKKSVELHRGTIDFESIADQGTTFIVKLP 1622


>gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1131

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 16/292 (5%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEEN 246
           L       +     I   L + +   L      D    +          ++ R  A    
Sbjct: 705 LYTGADGVVRTSRTIKSRLIQQDGSRLLVGLSIDIFRQVEVERKLSRALEQARLAA---- 760

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA+MSHE+RTPLNA++G S+++       +++     +   I+ SG+ LL LIN
Sbjct: 761 QAKSTFLATMSHEIRTPLNAVIGLSDLLRS---PRISDAQRVAFSEAINTSGKALLQLIN 817

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           ++LDLS+IEA + EL    +SL  ++ E   +    A +K +E            +  DE
Sbjct: 818 DVLDLSKIEAMKMELRPGPVSLTQLLSEVHQIFAQSAADKGLEFEFVPPEPEPPKLLLDE 877

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVL 421
             +RQV+LNL+ NAVKFT   G V +        T      I++ D+G GI    +  + 
Sbjct: 878 VRVRQVLLNLIGNAVKFTTR-GFVKLECALGFNRTPDCEVLITVADSGVGIDPEFMAHLF 936

Query: 422 TSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   A   +   G GLGL I++ ++    G   + S L  G      L
Sbjct: 937 EPFRQAVNADSRSFEGGSGLGLAISKRLIEQMNGTLDVESSLGVGTTFTVRL 988


>gi|71280347|ref|YP_271164.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146087|gb|AAZ26560.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 1137

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 10/327 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
            SF PV +A   + + +++        ++      +             IL   +   D+
Sbjct: 497 ASFMPVPLAEEIKILNALNNNVYPQQALIKAGEFIYQGFCNQFTDEQGNILGTISIFHDV 556

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            ++ +  +S   + R +AE  N  K +FLA+MSHE+RTP+NA+ G  +++   ++     
Sbjct: 557 TSQ-QATQSALVKARDQAEYANRVKIQFLANMSHEVRTPINAMQGMMDLLAHTSLDT--- 612

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                Y+ +   +   LL+L++E+LDLS+IEAG+  +S+ A++L  I+ + + +      
Sbjct: 613 -RQLHYLVNAQSASSTLLHLVDELLDLSKIEAGKMIVSQDAVNLPIIINKALKLNITNVD 671

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402
            + ++I   +   + S V +DE  + QV+ NL +NA+KFT  G  ++ + V         
Sbjct: 672 HQRVKIIVDMSADVPSNVISDEMRLVQVLANLFNNAIKFTEQGQIKLTIDVLSIDDTVAK 731

Query: 403 ISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +  +  D G GIA      +  +F Q   ++     G GLGL I Q I+   GG+  + S
Sbjct: 732 LRFRMSDTGIGIASNNQSHLFNAFSQADESMTRKYGGSGLGLSICQQIIKLLGGKIKLTS 791

Query: 461 KLREGVEVIAILPNTRV-LNFIPEDNH 486
           +L +G E+  +LP   V L+ + + + 
Sbjct: 792 QLGQGSELSFVLPFQIVQLDTLAQQDS 818


>gi|326563325|gb|EGE13592.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           46P47B1]
          Length = 988

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SFGQG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 474

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 148/328 (45%), Gaps = 11/328 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
               +    +    Y            + T  ++    L + +A  +   +   T     
Sbjct: 154 FVGVLRYTISAEPLYQAVNRIALYGAGVGTGVVILAFALSLLMAKRIVDPIEDLTNAAKQ 213

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + + N  + + +   D++    +    ++ E  K        K+ F++S+SHELRTPL +
Sbjct: 214 MAEGNFSVRAPKRFDDEVGTLADTFNYMATEIGKN----EKLKNDFISSVSHELRTPLTS 269

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G+ E +     G    E     +  I +    L+ L+ E+LD S+ ++G  +LS   +
Sbjct: 270 IKGWGETLISG--GLEEPEETMLGLEVISKETDRLIGLVEELLDFSKFQSGEMKLSRVPM 327

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            + +++++  +   +RA  K IE+  +  P+   V  D   ++QV +NLL NA+KFT   
Sbjct: 328 DVRELLQDLHLQFSVRAHAKQIELKLETPPTPLIVMGDPNRLKQVFVNLLDNALKFTPQN 387

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + +    ++ R   +++ D G GI   ++P V   F +G    +S   G GLGL I +
Sbjct: 388 GSIVIAASLSADR-LLVTVTDTGEGINPEDLPHVTEKFFKG----RSKLSGSGLGLAICK 442

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            I+  H G+F + S L +G  ++  LP 
Sbjct: 443 EIIQLHAGRFSVSSALGQGTSIMVDLPL 470


>gi|163793384|ref|ZP_02187359.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181186|gb|EDP65701.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 458

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 180/463 (38%), Gaps = 17/463 (3%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D        +     E+    V SL  +   +  FV +   +            W L  +
Sbjct: 3   DRPTRRMLIEDRQAAELCRKRVTSLTNIVIAIVSFVAVEPALSFSMG-----VSWVLAVV 57

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
           A+          ++                  G  A GL W  L ++  G+         
Sbjct: 58  AIVVMRWVSITVLVRRGSSSKRQLQAHS---AGATASGLAWGALPVLLWGSGGFVEFAFA 114

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
                       +  +     A         + L+T  ++   VL +++ G++    +  
Sbjct: 115 GFVIAGTTAGGLSSLS-WYRPAYLGYLLGATIPLATVYLLQGSVLFVAMGGLVLFYAAVL 173

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
              +    +   + L  Q         LE  +   D  R         K + LA +SH L
Sbjct: 174 IATSVSFSRQLQETLQLQ-------GTLEDEREELDNVRADLGLAARHKWQTLAYLSHHL 226

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NA++GFS+++  E++G L +  Y+EY   I  SG   L  IN ILD++ IE G   
Sbjct: 227 RTPMNAVIGFSDLMARESLGKLGHPKYREYAEGIQFSGVEALRAINAILDVAEIETGTMT 286

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           LS S  +L  +V EC+      A  + + +   +    +SV  D K +RQ++  L+SNA+
Sbjct: 287 LSLSDENLCVLVAECVAEQSSNATSRKVVLRCTLPDMPASVRGDPKRLRQILDGLISNAI 346

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           +FT   G V V+V         + + D G G++  ++      F +    +     G+G+
Sbjct: 347 RFTPKKGSVTVSVSAEDEEWWTVQVSDTGIGMSADKVKEAFIPFVRLDNPLTQEFSGIGV 406

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
            L +A+ +   HGG+F + S    G  V+  LP   +   +PE
Sbjct: 407 SLTLARRLTTLHGGEFDLDSGTGRGTTVVVRLPVA-IGRTVPE 448


>gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 1165

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA MSHE+RTP+NAILG + ++    +    +E  + Y+    ++ ++LL L+N
Sbjct: 647 RAKSDFLARMSHEIRTPMNAILGMTHLLLQTRV----DERQRHYLESTRQAARNLLGLLN 702

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S+IEAGR  +  +   L +++     +L   A EK +E+   + P +   +  D 
Sbjct: 703 DILDFSKIEAGRMTMENAPFLLSEVLENLADLLVFSAAEKGLELLFYVGPDVPYALVGDR 762

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVL 421
               QV+ NL +NA+KFT   G V ++V   S         + ++D G G+   +  T+ 
Sbjct: 763 LRFSQVLTNLANNALKFTHQ-GSVTLSVHLESKDAHQARLRVEVRDTGIGLTREQAGTLF 821

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +F Q   +      G GLGL I + ++    G+  + S+  +G      
Sbjct: 822 QAFQQVDTSTTRRYGGTGLGLAICERLVGMMDGRIRVESEPGKGSVFAFT 871


>gi|229188857|ref|ZP_04315890.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
 gi|228594562|gb|EEK52348.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
          Length = 463

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAIYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKSISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454


>gi|213970545|ref|ZP_03398672.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213924716|gb|EEB58284.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 1062

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 20/278 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I++           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 692 ISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGELD 751

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 752 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGLA 807

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT + GRV + +         
Sbjct: 808 RQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPM-GRVKIALQAVDNPDPQ 866

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   
Sbjct: 867 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 926

Query: 458 IRSKLREGVEVIAIL------PNTR--VLNFIPEDNHE 487
           + S+   G  +   L      P TR  V    P   H+
Sbjct: 927 LDSEPGNGTRISMNLLLTTLEPMTRQPVATKPPAAAHQ 964


>gi|120612176|ref|YP_971854.1| integral membrane sensor hybrid histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120590640|gb|ABM34080.1| integral membrane sensor hybrid histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 1197

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 169/389 (43%), Gaps = 35/389 (8%)

Query: 108 IWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
              L  Q A  L W L             +  +       +  ++  L N     ++  +
Sbjct: 585 HAHLAVQWAAALRWLLPRRAWRVLDSGLGHFLLLMLVIAPLLAAVFGLFNHQELQSLGAA 644

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLI 225
             PV        + S  +       +++  ++++  + +   K   +  + Q       I
Sbjct: 645 GAPVAA------LRSGLLKAYLALLVISGIVAWWLVLAHKSRKVAQEESNRQTHLLQREI 698

Query: 226 AELEVAKSLSDETRKRAEEE---------------------NLAKSRFLASMSHELRTPL 264
           A          E R+ AE+                      N AKSR+++++SHELRTPL
Sbjct: 699 ALHRQTDQALQEARRTAEQARGVAEEAREEAEHARRLADQANQAKSRYISAISHELRTPL 758

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N+ILG+++++  +   P      ++ +G I R G+HLL LI   LD++RIE+G+  L   
Sbjct: 759 NSILGYAQLMGEDASVP---PHRRQAVGVIRRGGEHLLTLIEGTLDIARIESGKLTLQVR 815

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383
            +   D V E + M + +A+ K +         L  V   D+K +RQ+++NL+ NA+KFT
Sbjct: 816 PMRFADCVHEMVEMFEPQARAKGLAFRFDPQGMLPQVVRGDDKRVRQILINLIGNAIKFT 875

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           A  G V + V   +     I I+D+GPG+ E E  ++   F +G+ +   A  G GLGL 
Sbjct: 876 AA-GHVRLGV-RHARELALIEIEDSGPGLTEAERASIFEPFERGAASSHGAAPGAGLGLT 933

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           IA+ +    GG+  + S    G      L
Sbjct: 934 IAKMLTELMGGEMTVTSTPGAGALFRVRL 962


>gi|229132830|ref|ZP_04261675.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
 gi|228650657|gb|EEL06647.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
          Length = 351

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 148/344 (43%), Gaps = 18/344 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATA 196
            +   A L I  SI+   +  +  A  ++  P +   +S        VL  +L G+L   
Sbjct: 13  IVALFAFLTIIWSIAFFVSSSVMKAFEINVSPFITFLISDMVGFVFIVLIWTLIGILMRP 72

Query: 197 --LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEENLAK 249
              +    I   + K      S +   ++     +   ++    ++DE           +
Sbjct: 73  KREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----AMEKMR 128

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++++SHE+++PL +I GF+  ++ + +     E  K Y+  I      L  L   +L
Sbjct: 129 QEFVSNVSHEIQSPLTSIKGFARALQDDNL---PVEKRKHYLTIIETETTRLSKLSQNLL 185

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L+ +E+  Y    +   L   +++ ++  +    EK +E+   +D     V AD++ M 
Sbjct: 186 KLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKELELDLDMDK--VCVTADKESMS 243

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV +NL+ N++KFT  GG + + +         +SI D G GI+E +   +   F +   
Sbjct: 244 QVWINLIHNSIKFTPNGGTITIHLKEHKE-FLEVSIHDTGIGISEEQKQHIFERFYKADS 302

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   A  G GLGL I + ++  H G+  + S    G E I  +P
Sbjct: 303 SRNRAYGGSGLGLAIVKKVLDLHKGKIKVESVEGNGTEFIVRIP 346


>gi|77747790|ref|NP_636549.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761272|ref|YP_244134.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 292

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 16/287 (5%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-----------RAEEE---NLAKSRFL 253
             + V  +   AE + L  + +  +   DET +           +AE+    +  KSRFL
Sbjct: 3   HANEVPAIDAMAELESLRQQNQALREELDETNQGVLALYAELDQQAEQLRDVSELKSRFL 62

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSHE RTPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++
Sbjct: 63  SYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSASTRELSEMVDDLLDLAK 121

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAGR  +S     L+D+      M +         +  +  P L  ++ D+K + Q++ 
Sbjct: 122 IEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDPPVLPMLYTDDKKLAQILR 181

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           N +SNA+KFT   G V V            S++D G GI       +   F Q    ++ 
Sbjct: 182 NFISNALKFTPQ-GHVRVFAQLQGDTHVRFSVQDTGIGIPAELHDALFEDFVQVDSPLQK 240

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              G GLGL I +      GG   I S + +G E   +LP T     
Sbjct: 241 RLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLPVTLAPQQ 287


>gi|297539639|ref|YP_003675408.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297258986|gb|ADI30831.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 739

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 171/456 (37%), Gaps = 44/456 (9%)

Query: 37  IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96
           +           + I+   V            + +      I   +    ++   K   +
Sbjct: 19  LELEQANIRIPAAIIIFALVTYSYFTQALGHPDLVAFKILFIYAVLSLLLIATILKRKLN 78

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
            I       W   + V                  T     + +     ++          
Sbjct: 79  PIYRRLAGAWLDIVAVSVFMS------------LTADIGVMLVAVYLWVIFGNGFRYGKK 126

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           ++    +      ++    +    +   +  SL  ML     +   +   L         
Sbjct: 127 YLYHAQMLSIIGFILATNLSSYWETHKTIGYSLIAMLIVLPLYVAKLIARLH-------- 178

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                         AK+  +  R++A + ++AK++F+A+MSHE+RTPLN I+G S +++ 
Sbjct: 179 -------------EAKNKVEIERQKAADASIAKTQFVANMSHEIRTPLNGIIGISTLLKT 225

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    N   ++ +  +  S + LL+L+N +LD ++IE  ++ + + A S  + + E +
Sbjct: 226 TPL----NTDQQDLLKTLEGSSKLLLSLLNNVLDFTKIEERKFTVEKIAFSPKEAIYETM 281

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            + Q  AQ K I++   +  SL+++  D   +RQV+ NLL NA+KFT   G V ++    
Sbjct: 282 EIFQTHAQTKGIQLGASVSDSLTTLNGDAFVLRQVLANLLGNAIKFTHD-GSVTISATVL 340

Query: 397 SGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       I D G GI   +   V  SF Q   +      G GLGL IA+ ++   
Sbjct: 341 QDDDVKSTVRFEIADTGIGIPADKQNKVFESFTQADASTTRKFGGSGLGLTIAKHMIEEM 400

Query: 453 GGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNH 486
           GG    +S    G     +L   +   L  +P+ + 
Sbjct: 401 GGALCFQSTEGIGSHFWFVLSLEKTKHLGTLPQTSS 436


>gi|149278863|ref|ZP_01884998.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149230482|gb|EDM35866.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 526

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 16/370 (4%)

Query: 125 TLVEPGTWTPEYLTIYKSAT-LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
            L+     T   +  +  A+ L++ALSI  +S+  L     +        L+        
Sbjct: 24  ALLILIMTTGAGILYFFFASQLMLALSIIFISSAAL----LVGLLLREFKLAFSDEQHRD 79

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
              +    +   A +F       L  S         E      +L+ A++   + R++ E
Sbjct: 80  RSLMGEFKLKPGAEAFQAKQILGLASSLNLTSERLRESCR---KLKQAETRLAKQRRKTE 136

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
               AK  FL ++SHE+RTP+N +LGF+ ++E    G + +  ++E +  I +S   L+ 
Sbjct: 137 ALKKAKQTFLVNISHEIRTPMNGVLGFARLLE----GSIKDTDHQESLRLIIKSADQLMT 192

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362
           ++N+ILD S +E G  +  +    L D V     ++    + K +     +   +  V  
Sbjct: 193 ILNDILDFSNLEEGNVKFHKQPFYLKDAVDGHFKLMASEFKSKGLGFKYHLSEYVPDVIS 252

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPT 419
            DE  + Q++LNL SNA+KFT  G   + ++V   +     +   ++D G GIA  +   
Sbjct: 253 GDELRLGQILLNLTSNALKFTDSGNVGIDISVVEETAEEVTLEFCVRDTGIGIALEKQQQ 312

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q S        G GLGL I + +++  GG+  + SKL  G      LP   V +
Sbjct: 313 IFDFFEQASNDASRRYAGTGLGLSIVKKLVSLQGGEVFLESKLGRGSNFYFRLPFETVKD 372

Query: 480 FIPEDNHEST 489
            +P+    ++
Sbjct: 373 VLPQTAIPAS 382


>gi|229543410|ref|ZP_04432470.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229327830|gb|EEN93505.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 465

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 11/302 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
                  A     +L I L+ +LA  L      T  + K ++ +      KD+L    E 
Sbjct: 162 FWIAGLLAFGITLILIILLSRILARPLINMKVATKKIAKGDLSVEIPVYSKDELGQLAES 221

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            ++L+ E     EE    +S FLAS+SHELRTPL  I G++++         +NET   Y
Sbjct: 222 IRTLAREWNHLREE----RSEFLASISHELRTPLTYIKGYADIARKNNCA--DNET---Y 272

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+     L ++I  + DL++++   +++ +    L  ++++    L    Q K I +
Sbjct: 273 LNIIYEEAAKLSDMIQNLFDLAKMDRNSFQIQKQNFPLFQMLKQIEHKLSPAFQNKRIIL 332

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             K  PS+  + AD     QV++NLL NA K++     + +TV   +     + ++D+G 
Sbjct: 333 TVKCHPSI-QLIADPVRFEQVVINLLDNAYKYSEPHTNIFLTVK-KADGAWKLIVQDHGK 390

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F +   +   +  G GLGL I + I+  H       S+   G  +  
Sbjct: 391 GIPEEDLPYIFERFYRVDKSRSRSFGGTGLGLAIVKEIVEAHNWHIHADSREGIGTTMEI 450

Query: 471 IL 472
             
Sbjct: 451 RF 452


>gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1]
 gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1099

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 15/259 (5%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D  + E E  K      R  AEE N  KS  LA++SHE+RTPLNA+  F +++E      
Sbjct: 446 DRKLLEKERLK------RIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEERKYLK 499

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   K  +     S   L+NLIN++LDLS+IE+G ++L ++ ISLID++ +   + + 
Sbjct: 500 TED---KYLLEKTKYSSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITSIFEN 556

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              EK ++++  I P +   +  D+  + Q+++NL+ NA+KFT   G + ++V       
Sbjct: 557 SLLEKKLKMYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFT-DNGYILLSVNLEKRND 615

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I++KD G GI E  I ++   F Q ++       G GLGL I + I+   GG  
Sbjct: 616 KDIFLKITVKDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMGGTI 675

Query: 457 LIRSKLREGVEVIAILPNT 475
            I SK  +G + I  +P  
Sbjct: 676 KIESKKGKGSKFIFDIPVE 694


>gi|186682168|ref|YP_001865364.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464620|gb|ACC80421.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 706

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L  +  +  LI E+          R  AEE +  KS FLAS SHELRTPL + L + ++
Sbjct: 432 RLYHRERQQRLIVEMH--NEALSHARAAAEEVSRLKSNFLASTSHELRTPLASTLNYLKL 489

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++       + +  +EYI   ++S Q+L+ +IN++LD+++IE GR  L    + L  +++
Sbjct: 490 LKERLY--EDEDELREYIDGAYQSTQNLVTIINDVLDIAKIEDGRIALDLETVYLQQLLQ 547

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E   +    ++ K I +    +  + +V+AD+  +RQV+ NLL NA KFT   G++ V  
Sbjct: 548 EQCFLSGAESRYKAIPLTLDCE--IETVFADKIKVRQVMTNLLDNAFKFTDE-GQIDVRA 604

Query: 394 GWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              S      IS+ D G GI       + + F Q   + + +  G GLGL I + ++   
Sbjct: 605 VVDSTGTMAQISVHDTGIGIEMENSEQLFSPFVQADGSAQRSYGGTGLGLTICKRLVELM 664

Query: 453 GGQFLIRSK-LREGVEVIAILPN 474
           GG+  + S  L +G  V   LP 
Sbjct: 665 GGKIWLESPGLGQGNTVTFTLPL 687


>gi|153832055|ref|ZP_01984722.1| sensor kinase VbsS [Vibrio harveyi HY01]
 gi|148871670|gb|EDL70511.1| sensor kinase VbsS [Vibrio harveyi HY01]
          Length = 1216

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      ++RA+    A+  FLA+MSHELRTPL+A  G  +++  +     +N
Sbjct: 644 ITEQQERELALIVAQERAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQA----DN 699

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++ KE I    RS  HL  L++E+LD S++EAG+ +++     ++  + + +   + +A 
Sbjct: 700 DSSKELITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPVKTDVVTTLCDVVRSFEPKAV 759

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++      P +   +  D   + Q+  NLLSNAVKFT+  G ++V+V    G+   +
Sbjct: 760 SKGLDYRVTFKPFANPWLKVDAVRLVQITTNLLSNAVKFTSD-GEINVSVAMNEGQ-LIL 817

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G G+ + ++  +L  F Q    I     G GLGL I   ++   GG+  I S+  
Sbjct: 818 KIADTGIGMTDSQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGELCIDSQFG 877

Query: 464 EGVEVIAILP 473
            G  V+  LP
Sbjct: 878 LGTTVVVKLP 887


>gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 813

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 140/255 (54%), Gaps = 10/255 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  +   +E ++ AE    ++ +F+A+++H+LR+PL  ++G++++I+   +    N
Sbjct: 292 VTRSQRYRVQLEEAKEFAESLLASREQFMAAITHDLRSPLTTVMGYTDLIQKTDL----N 347

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y+  I +S + +L L+N++LDLS++EAG+  + + + +  +++++ +  +    +
Sbjct: 348 EKQKHYLTQIKKSSEFILRLVNDLLDLSKLEAGKMLVEKLSFNPKNLIKDTVNNIIPAEK 407

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           +K+++I  ++   +   + +D   ++Q++ NL+SNA KFT   G + +        T   
Sbjct: 408 KKDVKIQIEVSKETNVQIQSDPFRIKQILANLISNAWKFTEK-GSILIAAKLQESSTENH 466

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KD+G GI++    ++   F Q + +I+    G GLGL I + +     G+  + 
Sbjct: 467 ILEIRVKDSGIGISKEMQASIFEEFSQENSSIEKRFGGSGLGLAITKRLTELLEGKIKVN 526

Query: 460 SKLREGVEVIAILPN 474
           S+  +G E I  +P 
Sbjct: 527 SEQGKGSEFIITIPV 541


>gi|296112383|ref|YP_003626321.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
 gi|295920077|gb|ADG60428.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
          Length = 988

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SFGQG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|306833966|ref|ZP_07467090.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
 gi|304423967|gb|EFM27109.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
          Length = 450

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+E+  +  F++++SHELRTPL ++  + E ++   +      +   +I         ++
Sbjct: 203 EKEDRERRLFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPS---FIKVSLDETNRMI 259

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPS 357
            +I+++L+LSRI+    +L     +    +   +        Q     K  EI +     
Sbjct: 260 RMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIK 319

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   M QV+ N+L+NA+K++  GG++ V++  T  +   ISI D G GI + ++
Sbjct: 320 SIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQ-LIISISDEGLGIPKKDL 378

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   A   A+ G GLGL IA+ I+  H G    +S   +G     +LP  + 
Sbjct: 379 PLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEKD 438

Query: 478 LNFIPEDNHES 488
                E   E 
Sbjct: 439 SEIYDEWEDEE 449


>gi|21231304|ref|NP_637221.1| RpfC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|21112958|gb|AAM41145.1| RpfC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 726

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYQHTHGDTLMATWLILVGELLVSL 64

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +L+     G    +          P          + I  
Sbjct: 65  GLMVAILLRPQVSHTRRLIGMLLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 117

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   SN++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 118 GLRYGSNYLRAATAMGSLCFLGAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 177

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 178 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 209

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 210 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 265

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           +++    ++LQ +A+ + +E   ++   +  +   D   +RQV+LNL+ NAVKFT   G 
Sbjct: 266 EMIGSVNLILQPQARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFT-EHGH 324

Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG           ++D G G+     P +  +F Q  + +    +G GLG  
Sbjct: 325 VLLRVTRVSGSAEDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 384

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG    +     G      LP  
Sbjct: 385 IAKGLVEAMGGSIGFKENQPSGSVFWFELPMA 416


>gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
 gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
          Length = 1209

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 135/259 (52%), Gaps = 8/259 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + +  D++ + +  K         AE+ N AKS FL+ MSHE+RTP+NAI+G S +   
Sbjct: 646 ARTDVTDVVRKEQQQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSAIAAQ 705

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 ++E  ++ I  I  S + LL+LIN+ILD+SRIE+G+  L    I   + +    
Sbjct: 706 SIG---DDEQVQDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFINGIN 762

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394
            +   +A  +N+E    +DP L   +  D   ++QV++N+LSNA+KFT+ GGRV  +V  
Sbjct: 763 SICYAQAASRNVEYECIVDPVLDDFYIGDAMKLQQVLINILSNAIKFTSEGGRVTFSVEQ 822

Query: 395 --WTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              T         + D G G++E  IP +   F Q S    +   G GLGL I+++I+  
Sbjct: 823 RQRTKNDVLMRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTALYGGTGLGLAISKNIVDM 882

Query: 452 HGGQFLIRSKLREGVEVIA 470
             G+  +RS    G E + 
Sbjct: 883 MDGRITVRSIKGIGTEFMV 901


>gi|325263100|ref|ZP_08129835.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031493|gb|EGB92773.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 959

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L+       + F ++V  +      D    E    + L  +    A+  N AKS FL+
Sbjct: 396 HWLAIHVIYVENPFNNDVLAIDLVQLLDAQRQEQARQEQLLRDALSSAKAANRAKSDFLS 455

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            MSH++RTP+NAI+G S +     +   + +T K+    I  S ++LL+LIN+ILD+SRI
Sbjct: 456 RMSHDIRTPMNAIIGMSTI---GQLKNEDTKTVKDCFQKIDASSRYLLSLINDILDMSRI 512

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVIL 373
           E G+ E++         V E   ++  +  EK ++   +  +P  +    D   M+Q+++
Sbjct: 513 ENGKMEIAHEIFDFKAFVDEVNQIIYPQTVEKEVDYDMRCREPLEAQYIGDSLRMKQILM 572

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NLLSN++KFT  GG + + +               ++D G G+++  +  V   F Q   
Sbjct: 573 NLLSNSLKFTPSGGYISIDIKEERRTNGFAYMEFVVQDTGIGMSDQFMQKVFLPFEQEEP 632

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  G GLGL I  +++   GG   ++S+   G   I  +P   V + +  +
Sbjct: 633 GNARNNVGSGLGLSIVYNLVQLMGGSIQVKSEKNAGTTFIVSVPFQIVSDDVERE 687


>gi|254236017|ref|ZP_04929340.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
 gi|126167948|gb|EAZ53459.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
          Length = 741

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A+E N AKS FLA+MSHE+RTP+NA++G  E++          
Sbjct: 224 ITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLA---PE 280

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   + +   L  LI +ILD+++IE+G   L+   + L  +V     M +  A+
Sbjct: 281 QRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLAR 340

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D +    V  D    +QV+ NL+SNA+KFT   G+V + +   S      
Sbjct: 341 QKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGRA 399

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 400 IVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S+  +G  V   L   +    +PE
Sbjct: 459 SEPGKGTRVSLDLLLRQCGPKMPE 482


>gi|16125949|ref|NP_420513.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|13423117|gb|AAK23681.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
          Length = 560

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 167/459 (36%), Gaps = 39/459 (8%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
            E       S  +  P+    ++ +          P    WS+  L V    L   K+ +
Sbjct: 13  AEDYRPAALSRRKQVPLRLFVIVTLCVAALILKNMPFLFGWSVAYLVVQICELYALKRFI 72

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           N+        VW   +    +A    W  L L E GT       +   +  +       +
Sbjct: 73  NAADPTD--RVWVNLVSDVALATVFGWLALPLWEMGTPAGAAGAMLLLSASIFTA---LM 127

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
                  A      P V  L    +++    D  L   L     F   I      S+  +
Sbjct: 128 GAEGCMVAFISGAGPHVAYLFITPLLAGGGGDPVLPYFLIGGGLFTLTIAMTFLWSHRAM 187

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            + +  +    A++                   A+S  +A +SHELRTP+NAI+  +  +
Sbjct: 188 KAEREARRAAEAQV------------------AARSALIAMVSHELRTPINAIVNGAGRL 229

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +  + G             I  +G+ +  L+N++LDLS+IEAGR  +      L   V +
Sbjct: 230 DAGSAG------------LIADAGRMMRTLLNDLLDLSKIEAGRMGVEMVDHDLRAQVSD 277

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            +   +  A+ K + +       L   V  D   +RQV+ NL+SNAVKFT  GG + V V
Sbjct: 278 AVDFWRGAAEAKGVTLTLTGAERLPRWVRGDPMRLRQVLNNLISNAVKFTTEGG-ITVDV 336

Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
              +       I ++D GPG+ E +I  +   + Q          G GLGL I++ +   
Sbjct: 337 RPVASGAAAVEIEVRDTGPGLTEAQIIRLFDPYEQLGSETARNFGGTGLGLAISRDLARL 396

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            GG+    S    G   +  LP         +   E   
Sbjct: 397 MGGELAASSAPEGGARFVLRLPTPAGAEPTIQALAEEQD 435


>gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
 gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
          Length = 1358

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 23/322 (7%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
              + +H                   + + L          +     +I   E      +E
Sbjct: 787  FRIVIHPPFWDTLAARILYAVLGILLVFGLIYVIN-----RRNHRKMIRMQE------EE 835

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              K+ EE +  K RF  ++SHELRTPL  I+   +++       L ++  K+ +  I+++
Sbjct: 836  ALKQKEELDQMKFRFFTNISHELRTPLTLIITPLDMMIRR----LTDDAMKKQLNTIYKN 891

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             Q+LL+L+N++LD  ++E     L      + + +          A EK++    + +  
Sbjct: 892  AQNLLSLVNQLLDFRKLEMKGERLHLMNGDMEEFIVSAYNNFMPMAVEKHLNFVNQSEHR 951

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAE 414
               ++ D   + +++ NLLSNA K+T  GG V++ +            IS+ D G GI+E
Sbjct: 952  ALYMFFDRDKVHKIVNNLLSNAFKYTPEGGTVNLLLATEEVEGRNYVRISVSDTGIGISE 1011

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP- 473
             ++P +   F Q          G G+GL + +  +  HGG+  + S++  G      LP 
Sbjct: 1012 SDLPYIFDRFYQVGNEGDEKI-GSGIGLHLVREYVNIHGGRIKVDSQMDRGSVFTVWLPM 1070

Query: 474  -NTRVLNFIPED--NHESTQYK 492
              T   + +P++  + EST  K
Sbjct: 1071 DLTPEPDELPDEITDMESTGMK 1092


>gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 664

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 255 TEQREIELAREQLLESERTARNEAESMARFKDEFLATLSHELRTPLTTILGWSELLLQRV 314

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                  TYK  +  I  S +    LI+++LDLS +  G+ +L   ++ L + V E +  
Sbjct: 315 --EEGQPTYKG-LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVHEALTT 371

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K+  +   +  +   V  D   ++QV+ NLLSNA+KFT   GR+ VT+     
Sbjct: 372 QELAAEGKDQILEVHVPDTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIER-DD 430

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S++D+G GIA   +P +   F Q          G+GLGL I Q ++  HGGQ   
Sbjct: 431 GHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 490

Query: 459 RS-KLREGVEVIAILP 473
            S    +G      LP
Sbjct: 491 TSGGRGKGATFTVRLP 506


>gi|325925186|ref|ZP_08186599.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544440|gb|EGD15810.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 719

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 2   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYHHTHGDTLMATWLILVGELVVSL 57

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +++     G    +          P          + I  
Sbjct: 58  GLMVAILLRPHVSHTRRLIGMVLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 110

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   S ++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 111 GLRYGSPYLRAATAMASLSFLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 170

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 171 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 202

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 203 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 258

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           +++    ++LQ +A+ + ++   ++   +  +   D   +RQV+LNLL NAVKFT   G 
Sbjct: 259 EMIGSVNMILQPQAKTRGLDYAIEVATDVPDLLKGDTGHLRQVLLNLLGNAVKFT-EHGH 317

Query: 389 VHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG G         ++D+G G+     P +  +F Q  + +    +G GLG  
Sbjct: 318 VLLRVARVSGNGADTMRLRFDVEDSGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 377

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG          G      LP  
Sbjct: 378 IAKGLVEAMGGAIGFAPNPSGGSVFWFELPLE 409


>gi|322615122|gb|EFY12045.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619965|gb|EFY16838.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622276|gb|EFY19121.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322632857|gb|EFY29601.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636652|gb|EFY33355.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322650253|gb|EFY46667.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655827|gb|EFY52129.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322665281|gb|EFY61469.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669538|gb|EFY65686.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673464|gb|EFY69566.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677392|gb|EFY73456.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679945|gb|EFY75984.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687417|gb|EFY83389.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192370|gb|EFZ77601.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198611|gb|EFZ83712.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202302|gb|EFZ87348.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208657|gb|EFZ93595.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323217634|gb|EGA02349.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323218982|gb|EGA03492.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223663|gb|EGA07973.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323232659|gb|EGA16755.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240303|gb|EGA24347.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245920|gb|EGA29908.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252484|gb|EGA36331.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255187|gb|EGA38966.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260066|gb|EGA43691.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267170|gb|EGA50655.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271507|gb|EGA54928.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 920

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKIILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFI 481
                  
Sbjct: 613 QEYQPPQ 619


>gi|196048232|ref|ZP_03115409.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196020969|gb|EDX59699.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 456

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 11/273 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I     K     L C+  +D      E+A+S  +   K+ ++    K+ F+AS+SHELRT
Sbjct: 192 IINASSKIAQGTLECEIREDYPGELGELARS-LNHMVKKIDQTTHMKNEFIASISHELRT 250

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  I G+SE +   T+  L  +  K+ +  I +    L++L+ E+LD S++E     L 
Sbjct: 251 PLTGIKGWSETL--GTVDSLTEKEIKQGMSIITQETDRLIHLVEELLDFSKLELDYPNLY 308

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           +  I L +++ E I  L  +A+++ I+I  +++     +  D   ++QV LNL+ NA+K+
Sbjct: 309 KENILLQELINESIWQLGTKAEQREIKIVSELEE--VEITGDRDRLKQVFLNLIDNAIKY 366

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           + I G + VT+         I I D G GIAE  +P +  SF Q      +   G G+GL
Sbjct: 367 SNIKGIITVTL--LKKDQVLIRITDQGIGIAEEHLPYINESFYQV----NTKSSGSGIGL 420

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + I+  H G   I S+L  G  +   LP  
Sbjct: 421 AIVKKIVELHNGSIQIDSELGIGTTITIKLPTE 453


>gi|126696865|ref|YP_001091751.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543908|gb|ABO18150.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 688

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L++E   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSDEEQIEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    I +   + + +   +L A EKN+ +  +I+ ++  +  
Sbjct: 469 LVNDVLDLSRLESGKI-VQLEQIDIKPAIEQTLRNYRLNATEKNVSLAHEIEETIPPILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPNIKNNAAPQCELVSPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEIADTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|326561891|gb|EGE12226.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           7169]
 gi|326563438|gb|EGE13703.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           12P80B1]
 gi|326568888|gb|EGE18957.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC1]
 gi|326569188|gb|EGE19249.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC7]
 gi|326578011|gb|EGE27875.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           O35E]
          Length = 988

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SFGQG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300073351|gb|ADJ62750.1| Hpt sensor hybrid histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 723

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 10/256 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L+ E         + ++ A+   L +  FL++MSHE+RTP+NA+LG + ++    +  
Sbjct: 60  LRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDT 119

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  E+   I  S   LL ++N++LD S+I+ G+ +++     L  +V      L  
Sbjct: 120 ----QQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSF 175

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396
           +A+EK + +   +D  L   +  D   +RQ++LNLL NA+KFT   G V + V      +
Sbjct: 176 KAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHA-GEVLLRVQALQVTS 234

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++D+G G+ E  +  + + F Q   ++     G GLGL I + ++   GG  
Sbjct: 235 DHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSI 294

Query: 457 LIRSKLREGVEVIAIL 472
            + S L  G      L
Sbjct: 295 GVESALGTGSCFWFEL 310


>gi|264679332|ref|YP_003279239.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
 gi|262209845|gb|ACY33943.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
          Length = 458

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 156/448 (34%), Gaps = 26/448 (5%)

Query: 53  PLFVLLVANIGTWFTQN----PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108
            L   + A +  W        P   +      A+  A +      +        +  W  
Sbjct: 1   MLASQVAAAMVVWLLWAYLVAPGATVLQQCVAAMTGALIGGWIWWLVDSWNGARLLHWLR 60

Query: 109 WLLVGQIAI-GLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFL 165
              +G +      W   ++            + +    L  I  ++ A  N ++      
Sbjct: 61  QSELGAVPNLAGIWGEASVRMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDAQG 120

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-------LSCQ 218
                    + Q         +   G L     F  Y     F  ++ +           
Sbjct: 121 RIEWCNQISAKQFGFDAERDVLQSIGNLVRDPQFSAYFAAQDFSHDLVMQGRESTPSRPV 180

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                L    E  K L        E+    +  F+A++SHE+RTPL  + GF E ++   
Sbjct: 181 KLSVQLYGYGEGRKLLLARDVTALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNL- 239

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             PL  +  + Y+  + +  + + +L+ ++L LSR+E      +   +S+  ++  C   
Sbjct: 240 --PLEEDERRRYLELMAQQAERMQHLVEDLLTLSRLEGSPLPSNNDWVSVAQLLNRCENE 297

Query: 339 LQLRA-----QEKNIEIFQKIDPSLSSVWAD----EKGMRQVILNLLSNAVKFTAIGGRV 389
            +  +     ++    +    D        D       +     NLL+NA+++T  GG++
Sbjct: 298 ARGLSNALTRKQAKPHVLNFPDEQALRQAGDLAGASAELHSAFSNLLANAMRYTPAGGQI 357

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V            ++KD+GPGI E  +  +   F +   +      G GLGL I + ++
Sbjct: 358 DVRWQLLPDGSARFAVKDSGPGIDEKHVSRLTERFYRVDRSRSRDTGGTGLGLAIVKHVL 417

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRV 477
             HG +  I S+L +G E     P +RV
Sbjct: 418 QRHGARLSIESELGKGSEFAVTFPPSRV 445


>gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 419

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  + L    R+ +   +  KS F+A+MSHE+RTPLNAI+GFS ++    +   + 
Sbjct: 166 VTELKNVQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASSE 221

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   I  + + LL L+N+I DLS+IE+G  +   +     D++RE   + + +  
Sbjct: 222 EERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLN 281

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++E+  +       ++++ + + QV+ NLL NA+KFT   G + +             
Sbjct: 282 NSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFT-ESGEIRLGCSLKGTEEVCFV 340

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + E   + + F +         QG GLGL ++Q+I+ N GG   + S++  
Sbjct: 341 VSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSEINR 396

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 397 GSTFSFVLPR 406


>gi|168186495|ref|ZP_02621130.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
 gi|169295498|gb|EDS77631.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
          Length = 1668

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 135/256 (52%), Gaps = 3/256 (1%)

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI-LGF-SEVIELE 277
            E ++L  EL+       +    + +    ++ F A++SHELRTPLN I  G+    + L 
Sbjct: 1380 EINELNKELKKTVDERTKLLNESIKYEEMRTEFFANISHELRTPLNVIFSGYQMLNLLLG 1439

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                 N E   +Y+  + ++   L+ LIN ++D+++I++G +EL+   ++++ IV    +
Sbjct: 1440 NENLDNKEKVDKYMDTMKQNCYRLVRLINNLIDITKIDSGFFELNMINVNIVSIVETITL 1499

Query: 338  MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +    + K I +          +  D   + ++ILNLLSNAVKFT  GG + VT+ +  
Sbjct: 1500 SVAQYIESKGINLIFDTFVEEKVMACDVDKIERIILNLLSNAVKFTNKGGNIFVTM-YEE 1558

Query: 398  GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 IS+KD+G GI + +   +   F Q   ++    +G G+GL + +SI+  HGG   
Sbjct: 1559 DDNIIISVKDDGIGIPQEKQAIIFDRFIQVDKSLSRNREGSGIGLALVKSIVELHGGNIS 1618

Query: 458  IRSKLREGVEVIAILP 473
            ++SKLREG E I  LP
Sbjct: 1619 LKSKLREGSEFIIKLP 1634


>gi|119475524|ref|ZP_01615877.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
 gi|119451727|gb|EAW32960.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
          Length = 560

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 133/300 (44%), Gaps = 11/300 (3%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                +  +       M  T   FFT     L      +   +  +  L  + E   ++ 
Sbjct: 112 ILFNWTGWIAVNISLEMALTGHFFFTMAMSTLLSWFAHLARKKLVEKQLELQQERDIAIQ 171

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E   +A    +AKS FLA+MSHE+RTP+N ++G  +++    M    +E   ++I    
Sbjct: 172 HEQESKA--ATMAKSAFLANMSHEIRTPMNGVIGMIDLVSKSEM----DEQQIDFISTAK 225

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           RS + L+ +IN+ILD S+IEAG   + +    L  I  E I   +  A +K ++   +  
Sbjct: 226 RSAESLMIIINDILDFSKIEAGELTIEKIEFDLDQIFNELIHDHRFLANKKGLKFELEKH 285

Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPG 411
               S V  D   + QV+ NLLSNA+KFT + G + V  G           + + D G G
Sbjct: 286 YIHHSKVVGDPHRITQVLNNLLSNAIKFTEV-GSIIVRYGLNPLGDHLLLNVKVIDTGIG 344

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++   +P +  SF Q  ++      G GLGL I + +    GG   + SKL EG      
Sbjct: 345 VSGTSLPYLFDSFSQADMSTTRNFGGTGLGLAITKQLCELMGGSITVHSKLEEGSVFQFS 404


>gi|297567355|ref|YP_003686327.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296851804|gb|ADH64819.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 384

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           + +  + +     +L      +  +   ++++        A       +  +A+    ++
Sbjct: 89  LETGELYEDEFRVVLPGGQERWLAVRGRVYRNRSGQPVRMAGITLDTTQRRLAEEALRQS 148

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
             R  E N A+ RF+A  +HELR PL AI G  E++       +  +   E +    +  
Sbjct: 149 EARLREINQAQQRFVADAAHELRAPLTAIQGNLELLYR--YPEMPPQDRMESVIQALQEA 206

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L  L+ ++L L+R +AG + L   +I L  ++ E        +Q+  +      +   
Sbjct: 207 RRLGRLVADMLALARGDAG-HRLKRESIELDRVLLEAFESTCHLSQQHRLT----HELEP 261

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D   ++Q+ L LL NA+K+T  GG+VH+ +         + + D G GIA  ++P
Sbjct: 262 VRLVGDRDYLKQLALILLDNALKYTPPGGQVHLALSRQE-GHAELQVSDTGSGIAPQDLP 320

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            V   F +   + +    G GLGL IA+ I+  HGG+  + S+  +G   +  LP 
Sbjct: 321 HVFDRFYRADQSRRRDPGGSGLGLSIAKWIVEQHGGEIWLESEPGQGTRAVVRLPL 376


>gi|24379906|ref|NP_721861.1| putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
 gi|24377885|gb|AAN59167.1|AE014984_2 putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
          Length = 450

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 8/226 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +      +   +I         ++ +I ++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDDGALTESVAPS---FIKVSLDETNRMMRMITDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           SRI+     L     +    +   +         ++  K  EI +        +  D   
Sbjct: 268 SRIDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDK 327

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           M QVI N+L+NA+K++  GG+V +T+  T+     +SI D G GI + ++P +   F + 
Sbjct: 328 MTQVIDNILNNAIKYSPDGGKVTITM-QTTDTQLILSISDQGLGIPKKDLPLIFDRFYRV 386

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A+ G GLGL IA+ I+  H G     S+  EG     +LP
Sbjct: 387 DKARSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432


>gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1157

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++     R  AE+   AK+ FLA+MSHE+RTPLN I+G+++++  +    L+    +  +
Sbjct: 637 ENELKAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLALDT---RRQV 693

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  +   L  +I++ILD S+IEA    L    + +  ++  C+ ++Q +A++K +E+ 
Sbjct: 694 IRIFEASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRKAEKKGLELR 753

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKD 407
                  + +  D   +RQV+LNLL+NAVKFT   G V + V             I++ D
Sbjct: 754 VDAQEIPAVLMGDGARLRQVLLNLLNNAVKFTDA-GSVELNVACLSRVGDRARLRITVTD 812

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+  +   +   F Q    I     G GLGL I+Q I+   GG+  I S    G  
Sbjct: 813 TGIGISAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGIDSAPGRGST 872

Query: 468 VIA--ILPNTRVLN 479
                 LP    L+
Sbjct: 873 FYFEIELPIAAELD 886


>gi|317509452|ref|ZP_07967070.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974]
 gi|316252281|gb|EFV11733.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974]
          Length = 567

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 139/335 (41%), Gaps = 21/335 (6%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-------- 215
             S   + +A+ T  ++ + +    L       L         +   N++          
Sbjct: 237 LSSLLTLQLAIGTGVLLVLGLAGYFLVRWSLRPLVEVERTANEIAAGNLERRVPDWGERT 296

Query: 216 ---SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                    + ++A+++ A + +  + ++A+       +F+A  SHELRTPL AI GF+E
Sbjct: 297 EVGRLSTALNSMLAQIQQAFAATQASEEKAKSSEGRMRQFVADASHELRTPLTAIRGFAE 356

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +                 +  I      +  L+ ++L L+R +  R  L    + +  ++
Sbjct: 357 LHRKGVGVSTAVA-----MSRIESEAIRMGKLVEDLLALARTDEQR-PLELEPVDMFQLM 410

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + +   +  A ++ +    +       V  DE  +RQV+ NL+SNA+  T     V + 
Sbjct: 411 TDAVHDAKAIAPDREVVFQLQPSGGAPVVLGDEPCLRQVLSNLVSNALSHTGDEASVTLW 470

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +G  +     + ++D GPG++  +   +   F +   +   +  G GLGL I  +I+  H
Sbjct: 471 LGGDAQD-VLLEVRDTGPGLSPEDAERIFERFYRVDPSRARSSGGSGLGLAIVDAIVRAH 529

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           GGQ  + S+L  G  +   LP    L   PE++ E
Sbjct: 530 GGQASVSSELGAGTTLRVRLPR---LAPDPEEDDE 561


>gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. 2_1_7]
          Length = 1359

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 130/330 (39%), Gaps = 12/330 (3%)

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
               + +     + +  P       +A+ +  +    +  +  T L  F    + +    +
Sbjct: 745  TTVSALERRITYTNLNPGTYTFKVKAMNNDRIWSKEITSLQITILPPFWATGWAIALYII 804

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269
              +         I  ++  K   ++ R   ++  E +  K RF  ++SHE RTPL  I+ 
Sbjct: 805  AGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMT 864

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              E +        +    ++ +  I+R+   LL L+N++LD  +I+     L  S   ++
Sbjct: 865  PLEKLMKTEKDMES----QQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIV 920

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              VR+     +  +++K I        +   +  D   + +++ NLLSNA KFT  GG +
Sbjct: 921  PFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTI 980

Query: 390  HV----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPI 444
             V     +         I + D+G GI   +   +   F Q +   K     G G+GL +
Sbjct: 981  SVTLRLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIGLHL 1040

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +  H G   ++S+   G      LP 
Sbjct: 1041 CREFVRMHHGTITVKSEPGAGSTFTVTLPV 1070


>gi|229103766|ref|ZP_04234446.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
 gi|228679642|gb|EEL33839.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
          Length = 448

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG V   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|307153079|ref|YP_003888463.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306983307|gb|ADN15188.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 679

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L     +E++   +     L  
Sbjct: 414 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGDDLTESERREFLETANHETDRLTR 472

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R      A+ L  ++ + +   QL A++KNIE++Q+I+ +L +V  
Sbjct: 473 LVNDVLDLSRLESSRI-YHFDAVDLGQLIDQTLRTYQLNAKDKNIELYQEIEANLPTVLG 531

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------TSGRGQYISIKDNGPGIAEG 415
               + QVI NL+ N++KFT  GGR+ +                   I + D G GI   
Sbjct: 532 HYDLLLQVITNLVGNSLKFTESGGRIVIRAYKLRPKSEHSRKASQVRIEVSDTGIGIDAE 591

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPN 474
           +   +   F +         +G GLGL I ++I+   H  +  + S++  G      L  
Sbjct: 592 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIVEEKHRSKVHLISEVGVGTTFWFELDV 650

Query: 475 TR--VLNFIP--EDNHESTQYKCY 494
            +   L  +P  +++ +S+Q + +
Sbjct: 651 YQDSSLESLPLEQESGKSSQPQSH 674


>gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 130/330 (39%), Gaps = 12/330 (3%)

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
               + +     + +  P       +A+ +  +    +  +  T L  F    + +    +
Sbjct: 755  TTVSALERRITYTNLNPGTYTFKVKAMNNDRIWSKEITSLQITILPPFWATGWAIALYII 814

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269
              +         I  ++  K   ++ R   ++  E +  K RF  ++SHE RTPL  I+ 
Sbjct: 815  AGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMT 874

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              E +        +    ++ +  I+R+   LL L+N++LD  +I+     L  S   ++
Sbjct: 875  PLEKLMKTEKDMES----QQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIV 930

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              VR+     +  +++K I        +   +  D   + +++ NLLSNA KFT  GG +
Sbjct: 931  PFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTI 990

Query: 390  HV----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPI 444
             V     +         I + D+G GI   +   +   F Q +   K     G G+GL +
Sbjct: 991  SVTLRLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIGLHL 1050

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +  H G   ++S+   G      LP 
Sbjct: 1051 CREFVRMHHGTITVKSEPGAGSTFTVTLPV 1080


>gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 617

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KS F++ +SHE RTPL ++     ++  E +G +N    KE +       +HL N
Sbjct: 389 EVDQMKSEFVSMVSHEFRTPLTSMNMGINMLLEENIGEINE-EQKELLEVAKEDCEHLNN 447

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++LDLS+IE+G  +L   A+++  I    I     +A+E+ +++  +    L  V+A
Sbjct: 448 LVDDLLDLSKIESGEIDLEFDAVAVKKIFEASIQPFMTQAEEQGVDLITEETNGL-EVYA 506

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   +  VI NL+ NA+++T  G ++ + +    G   +IS+ D G GI +     +   
Sbjct: 507 DFNKITWVITNLIGNALRYTGKGDKIKL-LADKKGHKMHISVADTGEGIPKEYRHKIFKK 565

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +     K  E G GLGL I++ I+  HGG+  + S++ EG      L
Sbjct: 566 FVRVGD-DKDEETGTGLGLAISKEIIEAHGGRIWVESEVGEGSIFTFTL 613


>gi|302879057|ref|YP_003847621.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581846|gb|ADL55857.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 708

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 15/269 (5%)

Query: 226 AELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             + V   ++++ R  + A   + AKS FLA+MSHE+RTP+N +LG  ++++   +  + 
Sbjct: 378 EYMAVRTDITEQKRIEEAAHAASRAKSEFLANMSHEIRTPMNGVLGMVDILQETKLNSM- 436

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  +G I  S Q LLN++N+ILD S+IEAGR ++   A     +  E + ++  +A
Sbjct: 437 ---QHRLLGTIQHSSQALLNILNDILDYSKIEAGRLDIECIATCPRVVAEEIVQLMISQA 493

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA----IGGRVHVTVGWTSGR 399
           +   + +          + +D   +RQ++LNLL NA+KFT+      G+V + V      
Sbjct: 494 KSVALCV-FVSPELPLWIASDPSRLRQILLNLLGNAIKFTSGVQGRAGQVSLNVRPCELD 552

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
               G    I DNG GIA   I T+   F Q   +      G GLGL I++ +    GG+
Sbjct: 553 DGHAGIRFDIADNGIGIAPEVIDTLFQPFAQADASTARKFGGSGLGLSISRRLAGLMGGE 612

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPED 484
             + S++  G      LP     +   E+
Sbjct: 613 IKLSSRIGAGSIFTLELPLIVAPDGAKEE 641


>gi|196033201|ref|ZP_03100614.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994630|gb|EDX58585.1| sensor histidine kinase [Bacillus cereus W]
          Length = 484

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  ++Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMEKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV W+     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTV-WSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|289423124|ref|ZP_06424939.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156455|gb|EFD05105.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
          Length = 435

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 129/281 (45%), Gaps = 8/281 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +++  +  +  Q    D ++   V         ++ E        F A++SHEL+TP
Sbjct: 163 GNRIYRVKIDPVRMQ--DIDNLSISTVVNIEDVTEMRKLENVRR---DFAANVSHELKTP 217

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L +I GF E ++ +    ++ E  K ++  I    + L  LIN+IL +S IE G+ EL++
Sbjct: 218 LTSIQGFVETLKSKDED-ISPEVRKRFLDIIENESRRLTILINDILLISSIE-GQVELTK 275

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              S+ ++      +L  +A+  ++ +          ++  ++  + +++NL++N +K+ 
Sbjct: 276 EEFSIREVSEYVGDLLNEKAERYSVSVNFDYSNIDDLIYTQKEYFKDLLINLVTNGIKYN 335

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG+V +           + I+DNG GI + ++  +   F + S +     +G GLGL 
Sbjct: 336 QKGGKVEIKY-RQDSTRLVLEIEDNGIGIDKDDLDRIFERFYRVSRSRSQNIEGTGLGLA 394

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           I + I+ +   +  + S+L  G +        ++     E+
Sbjct: 395 IVKHIVRSLDAKIFVESELGLGTKFTIEFDLVKIRKRQEEE 435


>gi|71899199|ref|ZP_00681362.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Ann-1]
 gi|71731057|gb|EAO33125.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Ann-1]
          Length = 1190

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 168/412 (40%), Gaps = 41/412 (9%)

Query: 86   NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
             +  G+++     +  E+      L+VG   +          +P +    Y         
Sbjct: 663  VIRAGRRIDLPVDQPFELLPNDRQLIVGARLLS-------FGDPLSNRYSYWLKGFDTGW 715

Query: 146  LIALSISALSNFMLPYAVFLSFFPVVVALS---------TQAIMSMHVLDISLAGMLATA 196
            +   S        LP A +         +           + +         ++ +  + 
Sbjct: 716  IDQGSSGTREFSSLPPADYTLLIQGTDPMGNLSRIHLVTFRVLPPWWRSAWGMSVLTGSG 775

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L     + ++  +   +    Q E+                 R+ AE  +LAK++FLA++
Sbjct: 776  LLLLWGVAWNYHRRLRRRARLQLEQHQ---------------REVAERASLAKTQFLATL 820

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
             HE+RTP+  +LG SE++    +          Y   I  +G+HLL L+N+ LDL++IEA
Sbjct: 821  GHEVRTPMTGVLGMSELLLETPLDT----RQHGYATSIQAAGKHLLRLVNDALDLAKIEA 876

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+  L         ++ + + M++   + K +    ++DP +   V  D   ++Q++LNL
Sbjct: 877  GKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYRLDPEVPQYVHGDADRLQQILLNL 936

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            L NA KFT   G V + V     +   G  I + D GPG++E +   +   F Q + A  
Sbjct: 937  LINATKFT-EHGEVVLQVAPGQEQACLGVRIDVADTGPGLSEEQCQRLFRRFEQVNGAST 995

Query: 433  -SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             +   G GLGL I + +     G+  + S+L +G     +LP   VL   PE
Sbjct: 996  VARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCFRVLLPLPWVLAVQPE 1047


>gi|266619626|ref|ZP_06112561.1| PAS domain protein [Clostridium hathewayi DSM 13479]
 gi|288868811|gb|EFD01110.1| PAS domain protein [Clostridium hathewayi DSM 13479]
          Length = 854

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 9/279 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              ++I   +    +            + +    +   ++    A   N+AKS FL++MS
Sbjct: 423 GNLSWIRLQVNPVYLSPEEVWIANLSDMTKEWEQRENLEQALMAANSANIAKSNFLSNMS 482

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           H++RTP+NAILG + + E     P   E     +  I  S +HLL LI+EILD+SRIE+G
Sbjct: 483 HDIRTPMNAILGMAAIAEQYAGDP---EKVINCMKKISYSSRHLLALIDEILDMSRIESG 539

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLL 376
           +  L     SL  ++   + M Q + + K +    +       S+  DE  + ++++N+L
Sbjct: 540 KMLLENKIFSLSGMLEGIVSMFQEQFKGKKLSFNMEKRSIKHDSLIGDEFRLSRILVNIL 599

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           SNA+K+T   G++  +V       +        IKD+G G+ E  + T+   F +     
Sbjct: 600 SNAIKYTPEQGQIVFSVTELQAGKEGYARYQFVIKDDGRGMTEEFLKTIFMPFTRMEEKE 659

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            S  QG GLG+ IA+S++   GG   + S L +G     
Sbjct: 660 GSYTQGTGLGMAIAKSMLDLMGGSINVESTLGKGSTFTV 698


>gi|229155572|ref|ZP_04283680.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342]
 gi|228627890|gb|EEK84609.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342]
          Length = 299

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I     
Sbjct: 67  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETT 123

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y   +    L   +++ ++  +    EK IE+   ++    
Sbjct: 124 RLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLEK--V 181

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   
Sbjct: 182 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYE-TLVEVRIRDSGIGISEEQKQH 240

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P 
Sbjct: 241 IFERFYKVDSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIPK 295


>gi|315280742|ref|ZP_07869555.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
 gi|313615610|gb|EFR88942.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
          Length = 610

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|228966149|ref|ZP_04127211.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793518|gb|EEM41059.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 353

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 58  IFLAVLLGFIVLLTIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 117

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 118 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 170

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 171 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDI 230

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 231 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 287

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 288 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTV 347

Query: 469 IAILPN 474
              LP 
Sbjct: 348 RVELPK 353


>gi|228940322|ref|ZP_04102893.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973238|ref|ZP_04133827.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979801|ref|ZP_04140123.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228779955|gb|EEM28200.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228786434|gb|EEM34424.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819448|gb|EEM65502.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 448

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESN-VIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G  L+ S   EG  V
Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|66768644|ref|YP_243406.1| RpfC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|7688441|emb|CAB89845.1| fused two-component sensor-regulator protein [Xanthomonas
           campestris]
 gi|66573976|gb|AAY49386.1| RpfC protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 726

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 172/452 (38%), Gaps = 50/452 (11%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
           K        + H ++L R    + +  L ++ +G  +       + +   + V    +SL
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYQHTHGDTLMATWLILVGELLVSL 64

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
           G  V              I +L+     G    +          P          + I  
Sbjct: 65  GLMVAILLRPQVSHTRRLIGMLLDYTCTGAIMAI-------QGEPASPLYAVCMWVTIGN 117

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +   SN++       S   +   L +    +   L   L   L     +F  +   + +
Sbjct: 118 GLRYGSNYLRAATAMGSLCFLGAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR 177

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                                         + A   N AKSRFLA+MSHE RTPLN + G
Sbjct: 178 ----------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSG 209

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL 
Sbjct: 210 MTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLR 265

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388
           +++    ++LQ +A+ + +E   ++   +  +   D   +RQV+LNL+ NAVKFT   G 
Sbjct: 266 EMIGSVNLILQPQARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFT-EHGH 324

Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V + V   SG           ++D G G+     P +  +F Q  + +    +G GLG  
Sbjct: 325 VLLRVTRVSGSAEDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTT 384

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GG    +     G      LP  
Sbjct: 385 IAKGLVEAMGGSIGFKENQPSGSVFWFELPMA 416


>gi|326940960|gb|AEA16856.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 458

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESN-VIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G  L+ S   EG  V
Sbjct: 393 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|228946855|ref|ZP_04109157.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812842|gb|EEM59161.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 448

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AIEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +  IA     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMDRIFDRFYKVDIARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|225866653|ref|YP_002752031.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790643|gb|ACO30860.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 484

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 231

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 3/228 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K+ F++++SHELRTPL +ILGF+  +  E    L  ET  E+I  IH   + L  LI +
Sbjct: 1   MKNDFISTVSHELRTPLFSILGFTGTLLREQ-DELERETRMEFISIIHDESKRLSALIED 59

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L +S+I++GR    +S +     V E    L++RA EKNI++  ++   +  ++AD+  
Sbjct: 60  VLMISKIDSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDS 119

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV +N++ NA+KFT  GG V V++   + +    S++DNGPGI   E   +   F + 
Sbjct: 120 LKQVAINIIGNALKFTPPGGVVQVSLFCEA-QTMCFSVEDNGPGIPAEEAEKIFEKFFRV 178

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               + A  G GLGL I + I+A H G   ++S   +    +  LP +
Sbjct: 179 ERPGE-AVDGTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLPIS 225


>gi|291515126|emb|CBK64336.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Alistipes shahii WAL
           8301]
          Length = 349

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 147/337 (43%), Gaps = 11/337 (3%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           ++ +      +++  +   +  +    +   V V ++  A+  +          +     
Sbjct: 12  LWIALLATAIVAVGMVIQHIEWWITLCTSVGVFVVVALAALFIIRKYVAYKLKPI----- 66

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +   ++  +  + +         +++  EL      +D    R +E    + ++L +++H
Sbjct: 67  YSIVLSRDVHTNEIFSELKDKRVENIGEELTAWADTNDREIARLKEAECFRKQYLGNVAH 126

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TP+  I G+   +     G  +    ++Y+    +S   L+N++N++  +S++E+  
Sbjct: 127 ELKTPIFNIQGYISTLLDG--GLEDELINRKYLERAEKSIDRLINIVNDLDTISKLESSM 184

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVWADEKGMRQVILNL 375
            +L+     ++ + +E     ++ A  K I I  K   +L     V AD+  + QV +NL
Sbjct: 185 NKLNLERFDVVALAKEIAEQAEMEADRKEIRISVKGTDNLPSPFWVLADKHYIGQVFVNL 244

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + N++++   GG+  +           I ++DNG GIA+ ++P V   F +        +
Sbjct: 245 IINSIRYGKEGGQTRIRF-RDMLDKILIEVEDNGSGIAKEDLPRVFERFYRTDKGRSREQ 303

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL I + I+  HG +  +RS+L  G      L
Sbjct: 304 GGTGLGLAIVKHIVEAHGERITVRSELGVGSTFSFTL 340


>gi|254479623|ref|ZP_05092929.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034439|gb|EEB75207.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 468

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 5/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++  SHEL+TPL ++    E +        +   YKE + D++     +  L+
Sbjct: 239 DEERKRFVSDASHELKTPLASVKALIESLINSR--SQDIAFYKEILQDVNGEIDRMTRLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N++L+L+R++  +       + + +++ + I  L   A+ KN+ +       +     D 
Sbjct: 297 NDLLELARLDKIK-SPRIKRVEVSEVISDVIDSLAPLAESKNVNLTFNGKEKV-FAEVDP 354

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
               ++  N++ N +K+T  GG V V +        Y++I DNG GI+E  +P +   F 
Sbjct: 355 DRFYRMAYNIVENGIKYTYEGGNVLVGLDEDEDN-IYLAISDNGIGISEEVLPKIFDRFA 413

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +G  A      G GLGL IA+ I+  H G+  + SK+ EG     +LP  +
Sbjct: 414 RGDTARSKKNGGFGLGLAIAKEIIDMHEGKITVESKVGEGTTFKIVLPKRK 464


>gi|134291304|ref|YP_001115073.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134493|gb|ABO58818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 745

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 125/281 (44%), Gaps = 14/281 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S V++    A ++ L+A       L  E R      N AK +FLA + HELR PL  I  
Sbjct: 332 SAVEVTEHVAAREKLVAANAERDRLLGELRD----ANQAKDQFLAVLGHELRNPLTPISL 387

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E+I         NE     I  I R   H++ LI+++LD+SRI  G+  L + A+ L 
Sbjct: 388 ALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKEAVRLA 442

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           DIV   + +     +++   +    DP  +    D   + QV+ NLL+NA K+T  GG +
Sbjct: 443 DIVDRAVEVASPLLEQRRHRLHVDTDPE-ARCHGDPVRLSQVVANLLTNAAKYTLPGGDI 501

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V     +     I + DNG GI    + ++   F +     K A  G+G+GL + +S++
Sbjct: 502 AVHAQRGADGSTLIEVHDNGAGIPPDRLQSIFEPFYRIDGDNKQAHGGLGIGLALVRSLV 561

Query: 450 ANHGGQFLIRSK-LREGVEVIAILP--NTRV-LNFIPEDNH 486
             HGG     S     G     +LP    RV     P+   
Sbjct: 562 NLHGGTVRADSAGPGRGSTFTIVLPEFRPRVGAAAAPQAEP 602


>gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 1406

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 21/344 (6%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193
           P    +     L+  ++    +     + V  S   +V   +         L + L+ + 
Sbjct: 246 PVREALSCGDILVEDIAGRFDALPRAAWRVPPSRVAIVPMATAGPAAPSGALVVGLSPLR 305

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKS 250
           A    +  ++   + +    I S QA                DE R RAE   E + AK+
Sbjct: 306 ALDDGYRRFLGLVVGQLASGIASAQAY---------------DEARMRAEALAELDRAKT 350

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F +++SHELRTPL  +LG  E         L+    +E +  +HR+G  L  L+  +LD
Sbjct: 351 AFFSNVSHELRTPLTLMLGPLEEALARPAHGLD-AALREDLEIVHRNGLRLRKLVGTMLD 409

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            SRIEAGR +     ++L     E   + +   +   + +     P  + V+ D +   +
Sbjct: 410 FSRIEAGRMQARFEPMALASFTAELASVFRSAVEHAGLRLEIDCPPLSAPVYVDREQWEK 469

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++LNLLSNA+KFT   G + V++         +++ D G GI E +I  V   F + + A
Sbjct: 470 IVLNLLSNALKFTLE-GEIRVSLCERED-AVELAVSDTGVGIPEDQIERVFERFHRVADA 527

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              + +G G+GL + + ++  HGG   + S+L  G   +  LP 
Sbjct: 528 RGRSHEGTGIGLSLVRELVHLHGGTVRVTSELDRGSVFLVRLPL 571



 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 22/250 (8%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               +  +   E +  K  FLA+++HELR PL  +    E++    +   +       +  
Sbjct: 1010 ERKQAEEALREADRRKDEFLATLAHELRNPLAPLRTGLELLS---VAGADAAEQARTLDM 1066

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            + R   H++ L++++LD++RI  G+ +L  + + L  +V   I   +       + +   
Sbjct: 1067 MTRQVSHMVRLVDDLLDMNRIRRGKIQLKRARLELSPLVARAIEATRTVCGRAGVTL-VA 1125

Query: 354  IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
               +   V AD   + QV+ NLL NA KFT  GG V V+V    GR   + ++D+G GI 
Sbjct: 1126 PPATAIEVHADADRILQVVHNLLHNACKFTPSGGEVQVSVRR-EGRDAVVCVQDSGIGID 1184

Query: 414  EGEIPTVLTSFGQGSI--------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
               +  +   F Q                           +S +  HGG     S+ L +
Sbjct: 1185 RAHLDGIFEMFAQVDAGNAGSGGGLGIGLTL--------VKSFVEMHGGSVSAASEGLGQ 1236

Query: 465  GVEVIAILPN 474
            G      LP 
Sbjct: 1237 GSVFTMRLPA 1246


>gi|167621587|ref|YP_001672095.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351710|gb|ABZ74436.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1069

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 123/245 (50%), Gaps = 6/245 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPL A+LGFS + E +   P  ++T + Y+     +GQ LL  +N+I
Sbjct: 698 KSEFLANMSHELRTPLTAVLGFSRLAEEQ---PELSDTTRGYLKRACNAGQALLLTVNDI 754

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S++EAG+ E++   +S   +  E + +   +A EK I +      +L   V AD   
Sbjct: 755 LDFSKLEAGQVEIAPRPMSPAKLATETLDLFATQAAEKGIALHLGGLETLPRTVRADPDR 814

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQ++LNL+ NAVKFT + G V V   +   G     ++ D GPG+ E     +   F Q
Sbjct: 815 VRQILLNLIGNAVKFTMV-GSVRVDAIFEPLGGFLSFAVTDTGPGVPEDRADQLFQRFSQ 873

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              +      G GLGL I + +    GG    +SK+ EG      +P   +    P    
Sbjct: 874 VDASSTRKHGGTGLGLAICKGLAEAMGGDIGAQSKVGEGSCFWFTIPAPELDVAAPIAAP 933

Query: 487 ESTQY 491
              Q 
Sbjct: 934 PQGQI 938


>gi|329768145|ref|ZP_08259650.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
 gi|328838056|gb|EGF87675.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
          Length = 641

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 5/239 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E +   +  F++++SHELRTPL  +  + E +E   +   + E   ++I  IH+    ++
Sbjct: 405 ERQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVL--EDKELAPQFIDTIHKETTRMI 462

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++NE++ L +++       +  I +  ++ +      L   EKN    + I  +   V 
Sbjct: 463 RMVNELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKHISKTPIFVE 520

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVL 421
            D+  + QV  N+++NA+K++  G  + + V          ISIKD G GI    I  + 
Sbjct: 521 GDQDKLTQVFDNIVNNAIKYSPNGKNITIRVRQNYHHNRVSISIKDEGVGIPLVHIDKIF 580

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   + + +  G GLGL +A++I+  H G+   +S+   G  +   LP  ++ + 
Sbjct: 581 NRFYRVDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLPCEQIDDE 639


>gi|323483821|ref|ZP_08089199.1| sensory box histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402843|gb|EGA95163.1| sensory box histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 480

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 149/339 (43%), Gaps = 22/339 (6%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            L +  S   +  L    +        V   F  V+  L+   +M               
Sbjct: 160 VLLMTASTESMALLESQVMHKAGFLQFVLFLFVAVIDLLAASFLMKP------------- 206

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
               F  +   L   +   L    + DD      ++ ++S +T ++ +  + ++  F+++
Sbjct: 207 ----FKKLQERLNMVSEGNLDQDIQVDDYKETRGISNAVS-QTLRKLKAVDQSRQEFVSN 261

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TP+ +I   ++ +      P+  E Y+E++ DI         +I+++L L +++
Sbjct: 262 VSHELKTPITSIRVLADSLMGMEDAPV--ELYREFMVDISDEIDREGKIIDDLLSLVKMD 319

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
               +L+ +++S+  ++ + +  L+  A+++NIE+  +    + +   DE  +   + NL
Sbjct: 320 KSSPDLNITSVSINALMEQILKRLRPIAKKRNIELVFESQREV-TADVDEVKLSLALSNL 378

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + NAVK+    G VHV +     +  Y+ + DNG GIA      V   F +   A     
Sbjct: 379 VENAVKYNHEDGWVHVVLDA-DHKFFYVKVIDNGVGIAPEFQEHVFERFYRVDKARSRET 437

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLGL I ++I+  H G   ++SK  EG      +P 
Sbjct: 438 GGTGLGLAITRNIVILHQGAIKLQSKEGEGTTFTVRIPL 476


>gi|301163195|emb|CBW22745.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis 638R]
          Length = 511

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R +A+E +  KS FLA+MSHE+RTPLNAI+GFS +I    +  L
Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVD-L 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  ++Y   I ++  +LL L++++LDLS IE+       +   L  ++ E     + R
Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENR 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
             +  ++    +      +  D   +RQVI +LL NA KFT   G + +    +      
Sbjct: 380 IPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVK-GHIDIGYALSDHGEKI 437

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G GI   +   V   F +      S  QG GLGL + ++I+   GG   + S+
Sbjct: 438 YVFVADTGCGIPSDQYKKVFERFYKID----SFVQGAGLGLSVCKTIVEGLGGTINVYSQ 493

Query: 462 LREGVEVIAILPNTR 476
           L+EG     ILP  R
Sbjct: 494 LKEGSRFSVILPLNR 508


>gi|164687392|ref|ZP_02211420.1| hypothetical protein CLOBAR_01033 [Clostridium bartlettii DSM 16795]
 gi|164603816|gb|EDQ97281.1| hypothetical protein CLOBAR_01033 [Clostridium bartlettii DSM 16795]
          Length = 1077

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 8/298 (2%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDET 238
             ++        G +   +     I Y+      K+ +  A + + LI E+E  K L D  
Sbjct: 775  FTIKPPVWKSEGAVLLYMVIIVLIIYNNSNKVKKLDNLVAIRTEALINEMETNKQLFD-- 832

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHR 296
              +  +   +K+ +  ++SHELRTPLN I    ++I     T   ++ E   EY+  +++
Sbjct: 833  --KIIKAERSKNNYFINLSHELRTPLNVISSVEQLISNLNRTEKGISKEKIDEYMKVMNK 890

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            + + LLNLIN I+D ++IE G+Y+++    +++ IV E  + ++   +   I +    + 
Sbjct: 891  NVKRLLNLINNIIDTTKIENGKYKINLEEENIVYIVEEIALSVRDAIESTGINLIIDTNT 950

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                +  D   + + I+NLLSNA KFT  GG + V +    G    I+++D G GI E  
Sbjct: 951  EEKIIKCDRNEIERCIINLLSNASKFTPSGGTITVDIE-DLGEKVKITVEDTGIGIEEKY 1009

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               +   F Q   +    + G GLGL I + I+  H G+  I S++ +G +   ILP 
Sbjct: 1010 HKYIFDRFNQIVDSSMETKGGSGLGLTITKHIIDMHNGEIYIESEVDKGTKFTIILPA 1067


>gi|163852923|ref|YP_001640966.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664528|gb|ABY31895.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 932

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 149/326 (45%), Gaps = 9/326 (2%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++     +A +   +   H              +        L   N +  +       L
Sbjct: 207 VTRPLAALARTMDGVRLGHDYSRRAEAGSGEVGALAESFNDLLRAVNERDRAIARYNAGL 266

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+ +      E ++ A+E N AKS FLA+MSHE+RTP+N +L  +E++    +     
Sbjct: 267 EEEIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----P 322

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I RSGQ LL +IN+ILD +++EAGR E+    +S  D+    + +   RA+
Sbjct: 323 PRQQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERAR 382

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
              +++  +ID  +   +  D   + QV+ N +SNA+KFTA  G V V +          
Sbjct: 383 SAGLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTAT-GHVLVRMEMEHESSGPV 441

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I++ D G GI +  +  + T+F Q   +I     G GLGL IA+ ++A  GG+  + S
Sbjct: 442 LRIAVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVES 501

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486
           +L EG    A +P        P   H
Sbjct: 502 RLGEGSTFWARIPVEGAEGAEPAVRH 527


>gi|91773227|ref|YP_565919.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91712242|gb|ABE52169.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 607

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 133/265 (50%), Gaps = 2/265 (0%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +  + I+    E++     L+       E   + E  +  K  FLA++SHELRTPLN I 
Sbjct: 344 QMIMGIIGMAIERNLNEESLKTYAYQLAEANYQLESLDRMKDEFLANLSHELRTPLNVIK 403

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GF  ++  E  G L+ E  ++ +  + R+   L+ L+  +L ++ ++A   + S + I++
Sbjct: 404 GFGGLMSEERFGKLD-ERQRKAMDAVMRNTTILIELVESLLYITSVQADMIKYSFAQINV 462

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +   I ++    ++K + +   +   L  +  D+  + +V ++LL NA+KFT   G 
Sbjct: 463 ESSLERAISLVASNIEKKRLMLKIDVKKDLPYIRGDKVYLEKVFVHLLGNAIKFTPASGT 522

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V +  T     +I+IKD G G+A  +IP +   F Q   ++     GVG+GL I + I
Sbjct: 523 VSVFMDRTRD-SLHIAIKDTGVGVASDQIPYMFHKFRQLDGSLTRKYGGVGIGLYICKHI 581

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +  H G+  + S+   G ++  ILP
Sbjct: 582 VDAHKGKIWMESEEGTGTDIHIILP 606


>gi|71906100|ref|YP_283687.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845721|gb|AAZ45217.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 835

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHE+RTP+N ILG ++++    +  L+ E   EY   I  SGQ LL L+N+IL
Sbjct: 452 SNFLAMMSHEIRTPMNGILGMAQLLL---LPDLSKEEGNEYARTILNSGQTLLTLLNDIL 508

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGM 368
           D S+IEAG+ E S  A     +VRE + +     +EK I I         +   AD   +
Sbjct: 509 DFSKIEAGKLEFSAVAFDPAQLVRETVTLFTGAVREKGIVIDTDCQGTGGARYRADSTRL 568

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSF 424
           RQ++ NL+SNAVKFT   G V V     +          S+ D+G GI   +   +   F
Sbjct: 569 RQMLANLVSNAVKFTTQ-GFVRVDAREINRDRGTALLEFSVSDSGIGIPVDKQSLLFKPF 627

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +      G GLGL I + +    GG+  + S+  +G      +
Sbjct: 628 SQADSSTTREYGGTGLGLSIVRRLAEMMGGEVGVESESGQGARFWFRI 675


>gi|85373912|ref|YP_457974.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
 gi|84786995|gb|ABC63177.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
          Length = 418

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 137/335 (40%), Gaps = 6/335 (1%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            ++ +        +      +++A      +    +      +          +  +   
Sbjct: 66  GMATMIEHSATPLMLSERNRIIIANRAARSVLGSHVVGQDVRVAFRHPEAIALMDRNEPG 125

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLS--DETRKRAEE-ENLAKSRFLASMSHELRTPLNA 266
             +     + +    +   ++ + L+  +   + AE   + A + F+A+ SHELRTPL +
Sbjct: 126 QAIVTGLARPKDIWSVNRYQMNEELAVIELANRTAEADISRAHTDFVANASHELRTPLAS 185

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G++E +       ++  T +++I  I+R  + L +L+++++ LSRIEA ++E     +
Sbjct: 186 IIGYAETLSDTP-DQIDTPTAQKFIDTIYREARRLQSLVSDLMSLSRIEAEKHEQPVERV 244

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L  +V                 +         +V  D + + Q++ NL+ NA K+ +  
Sbjct: 245 DLSAVVERAARDAANLGDRAERLVIDIH--GQYAVGGDAQQLEQLVRNLVDNAFKYGSKD 302

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             V V +   +     + + D G GI    +P +   F +       A  G GLGL I +
Sbjct: 303 APVTVRLSQAASGDARLDVVDQGEGIPREHLPHLTRRFYRTDPGRSLASGGTGLGLAIVK 362

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            I+  H G+  I S++  G  +   +P  R ++  
Sbjct: 363 HIVQRHRGRLDIDSEMGVGTTITVRIPLWREMDAP 397


>gi|291519642|emb|CBK74863.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 478

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 8/305 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           +     +   V+ +SLA M+A   +  F+     +  S   I+    +    I      +
Sbjct: 170 IFVSYALIGAVIVVSLAIMVAVFSAIHFSSPMIKMSNSLDAIIREYTDSLPEIHVFRELQ 229

Query: 233 SLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +SD   E  K+ +  + ++  F++++SHEL+TPL ++   ++ +      P+  E YKE
Sbjct: 230 QISDKFNEVIKKLQAIDQSRQEFVSNVSHELKTPLTSMKVLADSLNGSEDVPI--EMYKE 287

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++ DI         +IN++L L R++    EL+ SA+++ +++   +  L+  A++  IE
Sbjct: 288 FMVDIGDEIDRETKIINDLLSLVRMDKSGAELNVSAVNINELIEHILKRLKPIAEKAGIE 347

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +          DE     V+ NL+ NA+K+   GG VH+++  +  +  YI ++DNG
Sbjct: 348 VVFE-SFRPVVAEVDEVKFTLVVTNLVENAIKYNDEGGWVHISLN-SDHQFFYIKVEDNG 405

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E  +  +   F +   +      G GLGL I +S +A H G+  +RSKL EG    
Sbjct: 406 LGIPENSVDHIFERFYRADKSHSREIGGTGLGLAITKSAIAMHNGEIKVRSKLGEGTTFD 465

Query: 470 AILPN 474
             +P 
Sbjct: 466 VRIPL 470


>gi|119485203|ref|ZP_01619588.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119457431|gb|EAW38556.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 364

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 150/358 (41%), Gaps = 12/358 (3%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            +G+      L+        ++   +        ++ ++  +++           + ++ 
Sbjct: 17  VMGVGLGSFILMSKVYSPRLFVLQLERLEQTQFFNVRSVRTYLVRGFEITWNRSTLWSVG 76

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             A  +  +     A  +   L+    IT      N+     ++E  +L         ++
Sbjct: 77  VGATAAGALSYWV-AKRITQPLTQMREITQKFAAGNLDERMIKSEIPELNQLSLSFNRMA 135

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +      E     +   ++ M+HELRTPL  + G+ E +    + P +     E    + 
Sbjct: 136 E----SIEGIEQRRRELISDMTHELRTPLTVVRGYLEEMAEGQIQPSD-----ELYNRLI 186

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R  + L  L+N++ +LS+ EAG   ++   ++L  ++   +     +  E    I     
Sbjct: 187 RETRRLERLVNDLQELSKAEAGYLVINPKPLNLRPLLESLVTRFGDQLLEYGPVIRLDCP 246

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
            SL +V+AD     Q+++NLL NA+++T   G + V V W +    ++++ D G GI+E 
Sbjct: 247 SSLPTVFADIDRTEQILVNLLGNAIRYT-ENGSITVKV-WQNLNSVWVAVIDTGIGISEI 304

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++P V   F +G  +      G G+GL I + ++   GG+  + S+L +G      LP
Sbjct: 305 DLPHVFERFWRGERSRSRQWGGTGIGLAITKRLVELQGGKIEVESELGKGSIFRFCLP 362


>gi|326571860|gb|EGE21865.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC8]
          Length = 988

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           FT     L  S  ++ +   E +  +     E+E+        R  A   + AKS FLA+
Sbjct: 268 FTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLAN 327

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++  +            Y+  I +S  HLL L+N++LD S+IE
Sbjct: 328 ISHELRTPLNSIDGFINLLARKG---ELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIE 384

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L      L D V + + ML   A EK + +       +   +  D   ++Q++ N
Sbjct: 385 AGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTN 444

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           L+ NA+KFT + G V V V          I ++D G GI+E +   +  SFGQG +++  
Sbjct: 445 LVGNAIKFTDM-GSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTR 503

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLI---RSK--LREGVEVIAILP 473
              G GLGL I++ +    GG       RS+     G      +P
Sbjct: 504 RYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|323692785|ref|ZP_08107012.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503099|gb|EGB18934.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 480

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 149/339 (43%), Gaps = 22/339 (6%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            L +  S   +  L    +        V   F  V+  L+   +M               
Sbjct: 160 VLLMTASTESMALLESQVMHKAGFLQFVLFLFVAVIDLLAASFLMKP------------- 206

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
               F  +   L   +   L    + DD      ++ ++S +T ++ +  + ++  F+++
Sbjct: 207 ----FKKLQERLNMVSEGNLDQDIQVDDYKETRGISNAVS-QTLRKLKAVDQSRQEFVSN 261

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TP+ +I   ++ +      P+  E Y+E++ DI         +I+++L L +++
Sbjct: 262 VSHELKTPITSIRVLADSLMGMEDAPV--ELYREFMVDISDEIDREGKIIDDLLSLVKMD 319

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
               +L+ +++S+  ++ + +  L+  A+++NIE+  +    + +   DE  +   + NL
Sbjct: 320 KSSPDLNITSVSINALMEQILKRLRPIAKKRNIELVFESQREV-TADVDEVKLSLALSNL 378

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           + NAVK+    G VHV +     +  Y+ + DNG GIA      V   F +   A     
Sbjct: 379 VENAVKYNHEDGWVHVVLDA-DHKFFYVKVIDNGVGIAPEFQEHVFERFYRVDKARSRET 437

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLGL I ++I+  H G   ++SK  EG      +P 
Sbjct: 438 GGTGLGLAITRNIVILHQGAIKLQSKEGEGTTFTVRIPL 476


>gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis
           638R]
          Length = 543

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 134/257 (52%), Gaps = 10/257 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E    + +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 289 EDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 344

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 345 DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQK 404

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I      S   +  D   + QVI+NL++NA+KFT+  G + +    T      
Sbjct: 405 NQRPEVQIMFTEKESGCVINTDRLRLSQVIMNLMNNAMKFTSE-GSITLGYRLTRQKDEL 463

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      +  +G GLGL I + I+   GG   + ++
Sbjct: 464 YFFVKDTGIGIPADQAGKVFERFVKL----NTFIKGTGLGLAICRVIIERLGGTIGVETR 519

Query: 462 LREGVEVIAILPNTRVL 478
             +G      LP    +
Sbjct: 520 EGKGACFWFRLPVREDM 536


>gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
 gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
          Length = 1291

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 5/283 (1%)

Query: 193  LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLAKS 250
            L T  ++       L            E        +  +      R  AE     L K+
Sbjct: 1007 LRTGEAWVIGQARELEGMRQNGERFAMELAVSQISHQGQRRFIAVIRDIAERKRIELMKN 1066

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             F++++SHELRTPL AI G   +I    +G +  +  ++ +   H + Q L  LIN++LD
Sbjct: 1067 EFVSTVSHELRTPLTAIAGSLGLINGGALGAV-PDNMRQMLAIAHSNSQRLSALINDLLD 1125

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            + ++ AG+      A +L  ++ + ++  Q  A++  +E+  +++   + V  D + + Q
Sbjct: 1126 MDKLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDD-AQVRVDAQRLAQ 1184

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            V+ NLLSNA KF+  G  V V +    G    +S+ D+GPGI E   P + + F Q    
Sbjct: 1185 VMANLLSNAAKFSPPGTCVDVRLQH-GGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADSG 1243

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                + G GLGL I + I+   GG     S   +G      LP
Sbjct: 1244 DTRQQGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286


>gi|16802334|ref|NP_463819.1| hypothetical protein lmo0288 [Listeria monocytogenes EGD-e]
 gi|47096377|ref|ZP_00233972.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498863|ref|ZP_03667212.1| hypothetical protein LmonF1_03828 [Listeria monocytogenes Finland
           1988]
 gi|254828748|ref|ZP_05233435.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|254831884|ref|ZP_05236539.1| hypothetical protein Lmon1_11045 [Listeria monocytogenes 10403S]
 gi|254900523|ref|ZP_05260447.1| hypothetical protein LmonJ_11934 [Listeria monocytogenes J0161]
 gi|254913526|ref|ZP_05263538.1| sensory box histidine kinase [Listeria monocytogenes J2818]
 gi|254937893|ref|ZP_05269590.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|255026055|ref|ZP_05298041.1| hypothetical protein LmonocytFSL_06310 [Listeria monocytogenes FSL
           J2-003]
 gi|284800587|ref|YP_003412452.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284993773|ref|YP_003415541.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|16409653|emb|CAD00815.1| lmo0288 [Listeria monocytogenes EGD-e]
 gi|47015251|gb|EAL06189.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601155|gb|EEW14480.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258610501|gb|EEW23109.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|284056149|gb|ADB67090.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284059240|gb|ADB70179.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|293591536|gb|EFF99870.1| sensory box histidine kinase [Listeria monocytogenes J2818]
          Length = 610

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|288556694|ref|YP_003428629.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547854|gb|ADC51737.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 461

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 16/319 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            +    + + F  + +A+     +S  + +  +     T       I       +V I +
Sbjct: 159 HIFLLTLGIGFLAMCLAVIVSFYLSKRLTNPIMKAQELTRE-----IASGRLDVDVPIST 213

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + E   L++++ +      E R         + +FL ++SH+LRTPL  I G+S +++ 
Sbjct: 214 SKDEVSILLSDISIMAISLKEYRD-------ERQQFLTNISHDLRTPLTYIKGYSALLKD 266

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           + + P      KE    I++    + +L+ ++  L + E G + L      L     +  
Sbjct: 267 QQLEP---PVVKEQSNIIYQEASRMEHLVQDLFHLMKYEEGSFHLDVERTDLKGFFDQIQ 323

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L+L  Q K + +          V  D     + ++NLLSNA++ T  GG ++V +   
Sbjct: 324 TKLKLDIQSKQLNLKVHAANDDMYVAIDRGQFERAVMNLLSNAIRHTQPGGEINVALTRE 383

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           + +   I I+DNG GI E ++  +   F +   +  +   G GLGL I + I+  H G  
Sbjct: 384 T-QRCMIEIRDNGTGIPEKDLDRIWERFYRVDSSRSTKLGGSGLGLAITKEIIHLHHGLI 442

Query: 457 LIRSKLREGVEVIAILPNT 475
            + SK+ EG   I  +P  
Sbjct: 443 SVSSKMGEGTTFIIEIPAE 461


>gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 1468

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E    +S     ++ AE    AKS FLASMSHE+RTP+N        +    +   
Sbjct: 674 RDVTESMKIRSELMLAKEGAELAVKAKSEFLASMSHEIRTPMN----GVLGMLGLLLNTK 729

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  +  +     S + LL LIN+ILD S+I+AG+ EL     +L  ++ E    +   
Sbjct: 730 LSDFQRRRVSIAQSSAESLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAHL 789

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           AQ+K++E+   +     S V  D   +RQ + NL  NA+KFT   G V +         +
Sbjct: 790 AQDKDLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAIKFTKQ-GEVVIKAELVPCDDE 848

Query: 402 YI-----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            +     S+ D G GIAE +I ++  SF Q   +      G GLGL I   +    GG  
Sbjct: 849 TLWRLKCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYGGTGLGLAIVDKVCNLMGGSV 908

Query: 457 LIRSKLREGVEVIA 470
            + S+   G     
Sbjct: 909 SVESEEGVGSCFRF 922


>gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis
           SB2B]
 gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1141

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +    E +  AE    A++ FLA+MSHE+RTP+NAI+GFS+++          
Sbjct: 512 ITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMNAIIGFSDILLESQF----E 567

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  I+ + + LL+L+N++LD ++++ G+ EL     SL+  + E I  L L+A+
Sbjct: 568 PEKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEVRDFSLVQELDEVISTLWLQAR 627

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K +++  ++ P L        + +RQV+ NL+SNAVKFT   G+V +TV    G     
Sbjct: 628 RKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTEK-GQVRLTVNPGQGNHVDF 686

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G G++  ++  +   F Q   ++     G GLG  I++ ++   GG     S+L 
Sbjct: 687 VVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTISKQLVELMGGHISAGSELG 746

Query: 464 EGVEVIAILPNTRVL--NFIPEDNH 486
           +G      LP    +    +P +NH
Sbjct: 747 KGSRFCFSLPLNPGVCDELVPLENH 771


>gi|116871682|ref|YP_848463.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740560|emb|CAK19680.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 610

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR  L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREHLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         ISI D G G+ E ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEISIADEGLGVPEEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTVIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1359

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 130/330 (39%), Gaps = 12/330 (3%)

Query: 153  ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
               + +     + +  P       +A+ +  +    +  +  T L  F    + +    +
Sbjct: 745  TTVSALERRITYTNLNPGTYTFKVKAMNNDRIWSKEITSLQITILPPFWATGWAIALYII 804

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269
              +         I  ++  K   ++ R   ++  E +  K RF  ++SHE RTPL  I+ 
Sbjct: 805  AGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMT 864

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              E +        +    ++ +  I+R+   LL L+N++LD  +I+     L  S   ++
Sbjct: 865  PLEKLMKTEKDLES----QQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIV 920

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              VR+     +  +++K I        +   +  D   + +++ NLLSNA KFT  GG +
Sbjct: 921  PFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTI 980

Query: 390  HV----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPI 444
             V     +         I + D+G GI   +   +   F Q +   K     G G+GL +
Sbjct: 981  SVTLSLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIGLHL 1040

Query: 445  AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +  H G   ++S+   G      LP 
Sbjct: 1041 CREFVRMHHGTITVKSEPGAGSTFTVTLPV 1070


>gi|302529717|ref|ZP_07282059.1| predicted protein [Streptomyces sp. AA4]
 gi|302438612|gb|EFL10428.1| predicted protein [Streptomyces sp. AA4]
          Length = 581

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 15/323 (4%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           A + F L          V  A+    ++   +  I L   L               K+  
Sbjct: 274 APTGFTLSAENRTKLIAVTAAILLLTVIVTALASIRLIRPLRALTG-----AAQRLKAGE 328

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                + +  D IA L  A +     R+  E    A    ++ ++HELRTPL+ I G+ E
Sbjct: 329 TGARVRVKGKDEIARLATAFNEMARAREELENARKA---MVSDVAHELRTPLSTIRGWLE 385

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +       ++      +  +     HL ++++++ DL+  +AG   +    +    ++
Sbjct: 386 AAQDGISQLDDD-----LVASLLEEAVHLQHIVDDLQDLALADAGALRVHPEPVDANTLL 440

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                    RA+   + +         ++ AD   +RQ + NL+SNA++ T  GG V VT
Sbjct: 441 THLAAAHAPRAEAAGVSLSV-PPMENPAITADPVRLRQALDNLVSNAIRHTPPGGSVTVT 499

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       + D G GIA  ++P V   F +   +      G GLGL I + +   H
Sbjct: 500 ASRR-DNEASFEVADTGTGIAPEDLPRVFDRFWRADPSRSRVSGGSGLGLAIVRKLAEAH 558

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
           GG     S   +G       P  
Sbjct: 559 GGAVTAASTPGKGTTFTLRFPAQ 581


>gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1069

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 134/278 (48%), Gaps = 17/278 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D I E +  +   ++ R +AEE + AK  FLA MSHE+RTPLNA++G S+ +      P 
Sbjct: 533 DDITEEKRRQQHLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSDALLEGQAAP- 591

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 +++  I  S  HLL ++N+ILD S+IEAG+  L         +V E +  ++L 
Sbjct: 592 ---EQIDHLRAIRESAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRALVAEALRAVELV 648

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A +K + +   I P++ + +  D   +RQ++LNLL NAVKFTA  G V VTV        
Sbjct: 649 ASQKRLALSATIAPNVPAALRGDPGRLRQILLNLLGNAVKFTAA-GSVAVTVETVPADQT 707

Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                G  +++ D G G+       +   F QG         G GLGL I++ ++   GG
Sbjct: 708 PAGRIGLAVAVTDTGIGLDPTRASELFERFNQGPGKAARRFGGTGLGLAISKELVERMGG 767

Query: 455 QFLIRSKLREGVEVIAI---LP-NTRVLNFIPEDNHES 488
              + S+   G         LP N   +   P +   +
Sbjct: 768 HIGVTSRQGAGSRFAFTVFLLPGNAAAVPPAPLETANA 805


>gi|222098143|ref|YP_002532200.1| two component system histidine kinase [Bacillus cereus Q1]
 gi|221242201|gb|ACM14911.1| Two component system histidine kinase [Bacillus cereus Q1]
          Length = 484

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|210617585|ref|ZP_03291641.1| hypothetical protein CLONEX_03865 [Clostridium nexile DSM 1787]
 gi|210149250|gb|EEA80259.1| hypothetical protein CLONEX_03865 [Clostridium nexile DSM 1787]
          Length = 443

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 188 SLAGMLATALSFFTYITY----HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            +A +      F  ++       L +    +   +  ++++  E +      D+  K  E
Sbjct: 154 YMAVIAVGMFCFAYFLAKWQTSRLIRPINNLNLEEPLENNVYEEFKPLLLSIDKQNKEKE 213

Query: 244 E-ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
              N+ K  F A++SHEL+TPL +I G++E+++   + P +      +   I+     L+
Sbjct: 214 AVANMRK-EFSANVSHELKTPLTSISGYAEIMKSGLVKPDD---MIGFSERIYNEASRLI 269

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LI +I+ LS+++ G  E+ +  + L  + RE    L  +A++K + +    +       
Sbjct: 270 TLIEDIIKLSKLDEGNVEIEQEDVDLFGLAREICSRLAPQAEKKKVHLEVIGE--TVIYH 327

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             ++ + ++I N+  NA+K+   GG V + VG T    + I ++D G GI E +   +  
Sbjct: 328 GVKRILDEMIYNVCENAIKYNVSGGEVKIWVGNTLKGPKVI-VQDTGIGIPEDQKERIFE 386

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F +   +      G GLGL I +     H  +  + SK+ EG  +  + 
Sbjct: 387 RFYRVDKSHSKETGGTGLGLSIVKHGAILHNAEITVNSKVGEGTRMEILF 436


>gi|217962157|ref|YP_002340727.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229141405|ref|ZP_04269943.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
 gi|217065095|gb|ACJ79345.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228642186|gb|EEK98479.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
          Length = 484

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|163800315|ref|ZP_02194216.1| sensor protein LuxQ [Vibrio sp. AND4]
 gi|159175758|gb|EDP60552.1| sensor protein LuxQ [Vibrio sp. AND4]
          Length = 859

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 22/319 (6%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDE 237
           +  + +A   AT       I   +++ N+  +    +   +I + +       A+  S+ 
Sbjct: 412 IPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNV 471

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+ AE+   A++ FLA MSHE+RTP+N ILG +++++       N +  K  I  +  S
Sbjct: 472 ARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----NTQEQKNQIDVLCHS 527

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G+HLL ++N+ILD SRIE G++ + + + S  D +     + +    +K +E+  + + +
Sbjct: 528 GEHLLAVLNDILDFSRIEQGKFNIQKHSFSFNDTMCTLENIYRPTCIKKGVELVIENNLN 587

Query: 358 L-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPG 411
               ++ D+  + Q++ NL+SNAVKFT   G + +                +++ D G G
Sbjct: 588 PNVEIFTDQIRLNQILFNLVSNAVKFTPS-GSIWLRAELEQLDGAENSVLVVTLTDTGIG 646

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +I  +   F Q          G GLGL I ++++    G   +RS    G + +  
Sbjct: 647 IESDKIDQMFEPFVQEEATTTREYGGSGLGLTIVKNLIDMLDGDVKVRSSKGMGTKFVIT 706

Query: 472 LPN---TRVLNFIPEDNHE 487
           LP     RVL   P++  +
Sbjct: 707 LPVRDHERVL--RPQEVSQ 723


>gi|49478723|ref|YP_038716.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206978115|ref|ZP_03238998.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|229198830|ref|ZP_04325524.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
 gi|49330279|gb|AAT60925.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206743651|gb|EDZ55075.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|228584666|gb|EEK42790.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
          Length = 484

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I     A++     +  AE  N AKS FLA+MSHELRTPLNAILG   ++    +  
Sbjct: 212 NRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLALLLKSGLTH 271

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
                  +Y      + Q LL L+N+ILD S+IEAG+ EL     +L  ++++  ++L  
Sbjct: 272 ----RQADYATKSEAAAQALLRLLNDILDYSKIEAGKMELEAEPFNLCALLQDLAVILAS 327

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR 399
            + +K +E+   IDP L   +  D   ++QV++NL  NA+KFT  G  V  + +     +
Sbjct: 328 NSHKKPVEVLFDIDPRLPRWLIGDSLRLQQVLINLGGNALKFTEQGEVVLFIHLIEQDAQ 387

Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +  ++D G GIA  +   + + F Q   +I     G GLGL I+Q  +A  G    
Sbjct: 388 NATLHFGVRDTGIGIAPEKQRLIFSGFSQAEASITRRFGGTGLGLSISQRFVAMMGSTLE 447

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           + S+  +G      L          +D  
Sbjct: 448 LESEPGKGSLFHFTLTLPLAAEQHSDDEQ 476


>gi|78046879|ref|YP_363054.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325924816|ref|ZP_08186251.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|78035309|emb|CAJ22954.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325544746|gb|EGD16094.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 291

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 9/280 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++  ++ S + +   L  ELE          +  D+  ++  E +  KSRFL+ MSHE R
Sbjct: 11  EAMAELESLRQQNQALREELEETNQGVLALYAELDQQAEQLREVSELKSRFLSYMSHEFR 70

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +
Sbjct: 71  TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 129

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S     L+D+      M +         +  +  P L  ++ D+K + Q++ N +SNA+K
Sbjct: 130 SPGWFDLMDLFAALRGMFRPLTDVGTTTLIFEDPPVLPLLYTDDKKLAQILRNFISNALK 189

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G+V V             + D G GI       +   F Q    ++    G GLG
Sbjct: 190 FTPQ-GQVRVFAQLEGDSHVRFGVHDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLG 248

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           L I +      GG+  I S + +G E   +LP T      
Sbjct: 249 LSICKRFAELLGGRVGINSVVGQGSEFYVVLPMTLAAEET 288


>gi|315181663|gb|ADT88576.1| sensor protein TorS [Vibrio furnissii NCTC 11218]
          Length = 986

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 29/375 (7%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA--- 178
               +V+               +++  ++ + +   ++  +V         AL + A   
Sbjct: 321 ATAAVVQLSRTLSLAQWTLSVLSVMGLIATTLIVWRVVYQSVVKRLARHTAALLSVAKGQ 380

Query: 179 -----IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
                    H     +   +ATA      +              Q  K  L   +E   +
Sbjct: 381 LHVEVDTQGHDELAEMGRAIATARDTAKALNVVAESEVQAKRELQEHKAHLEDVVEERTT 440

Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              E               R  AE+ + +KS FLA+MSHE+RTP+N +LG + +++    
Sbjct: 441 QLRETNHKLNQEVLNHAKARLDAEQASRSKSVFLATMSHEIRTPMNGVLGTAHLLQ---- 496

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G   ++  + Y+  I +SGQ+LL ++N++LD S+IEAG  ++  +  +L  ++R    ++
Sbjct: 497 GTPLSDVQRRYVNVIDQSGQNLLAILNDVLDYSKIEAGHLQIRHANFNLRHMLRHVYQLM 556

Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397
           + RA EK + +   +D  L+  W  DE  ++QV+ NL+SNA+KFT  G   + V      
Sbjct: 557 ESRAIEKGVTLNLHVDSDLAEDWQGDETRLQQVLNNLVSNAIKFTPHGHIDLAVYADPDD 616

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +     + D G GI E +  T+  +F Q    + +   G GLGL I+  ++A   G+  
Sbjct: 617 EQKLLFEVCDTGIGIHETDQQTLFDAFTQAEAGLATQ-GGTGLGLAISHRLVAAMQGELR 675

Query: 458 IRSKLREGVEVIAIL 472
             S + EG      L
Sbjct: 676 CESVVGEGSRFYFSL 690


>gi|183219846|ref|YP_001837842.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909977|ref|YP_001961532.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774653|gb|ABZ92954.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778268|gb|ABZ96566.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 710

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 123/255 (48%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+E   AK+  ++ ++ AE  N AK  FLA+MSHE+RTPL+ ++G  E++   ++   
Sbjct: 299 RDISEEFAAKTYLEKAKENAEMANKAKDSFLATMSHEIRTPLSGLIGMLELLYQTSL--- 355

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N+  K  + +   SG  LL ++++ILDLS+IE G+ ELS    S+  ++ E        
Sbjct: 356 -NDDQKSLVNNALVSGNSLLRILSDILDLSKIEEGKLELSLQPTSISRLLSEVATTYLQI 414

Query: 343 AQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
           A  K + +   +D  ++S    D   + Q+I N +SN +KFT+  G +H++         
Sbjct: 415 ASSKGLTLSYAVDEKITSAHILDSLRLSQIINNFVSNGIKFTSK-GSIHISANLIKNIDT 473

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +    S+ D G G+++ +   +  S+ Q +        G GLGL I   +     G   
Sbjct: 474 LQQIQFSVTDTGIGLSKTDQSKLFQSYTQATADTARLYGGTGLGLAICMRLSELMDGNIT 533

Query: 458 IRSKLREGVEVIAIL 472
           I S    G      L
Sbjct: 534 IDSLPGSGSTFSITL 548


>gi|319938298|ref|ZP_08012695.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319806591|gb|EFW03249.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 464

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 10/306 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +      +++  +  + +A ++   +S     T  L K N ++       D++      
Sbjct: 152 AMIAVFCMLVAGSITFLIIADIIVKPISRLNKATNELSKGNYRVRVNYTGNDEIARLNRS 211

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
              ++ +  K+ E     + +F++ +SHE +TPL AI GF+ +++ E +  +     ++Y
Sbjct: 212 FNQMAQQLAKQEET----RQQFISDVSHEFQTPLTAIQGFATILKNEELPLV---QRQKY 264

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I    + L  L   +L L+ ++    +L  S  SLI+ +   I      A  KNIEI
Sbjct: 265 ADIILFHSKRLSTLSKNMLQLTILDGEDVKLETSEFSLIEQLSRVIETQDNLALSKNIEI 324

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             ++  +   + ADE  + QV +NL++NA+K+T   G V ++V   S +   ++I+D G 
Sbjct: 325 EFQLPKNDIRIEADESRLEQVWINLVNNAIKYTNENGVVTISVK-KSSKEVEVTIEDTGV 383

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+++  I  +   F +   +     +G GLGL I + I+  H G   ++S+   G + I 
Sbjct: 384 GMSKEAISHIFERFYRQDKSRS--IEGNGLGLSIVKRIIDLHRGTIDVKSREDGGSKFII 441

Query: 471 ILPNTR 476
            LP  R
Sbjct: 442 RLPQER 447


>gi|332707381|ref|ZP_08427431.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332353872|gb|EGJ33362.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1221

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 13/260 (5%)

Query: 226 AELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              E      +   K A+  + N  K  FLA +SHEL+TP+ AILG S +++ + +G L 
Sbjct: 490 DTTEQRLFAQELAAKNADLVQLNRLKDEFLACISHELKTPITAILGLSTLLKDQALGEL- 548

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N+    Y   I++SG+ L+ ++N+ILDL+R+E G+ +L+   + +  +        +   
Sbjct: 549 NQRQSRYAQLIYQSGRKLMTVVNDILDLTRMETGQLKLTLEPVPIRTVCDRAYDQARSEI 608

Query: 344 ---------QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                    ++   +   +I+ SL  + ADE  +RQ++ +L SNA+KFT   G + + V 
Sbjct: 609 DSKHSEDNNRDYPTKFTLEIEASLEMLIADELRLRQMLAHLFSNALKFTDGSGEIGLKVN 668

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           W        ++ D G GI   +   +   F Q    +  + +G GLGL + Q +   HGG
Sbjct: 669 WWQ-GWIAFTVWDTGIGIPADKQHLIFQKFQQLEKPLTRSFEGTGLGLVLTQHLAHLHGG 727

Query: 455 QFLIRSKLREGVEVIAILPN 474
                SK   G +   + P 
Sbjct: 728 DVSFISKAGLGSQFTLLFPP 747


>gi|320547234|ref|ZP_08041527.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
 gi|320448122|gb|EFW88872.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
          Length = 450

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+E+  +  F++++SHELRTPL ++  + E ++   +      +   +I         ++
Sbjct: 203 EKEDRERRLFVSNISHELRTPLTSVKSYLEALDEGALKEDIAPS---FIKISLDETNRMI 259

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPS 357
            +I+++L+LSRI+    +L     +    +   +        Q     K  EI +     
Sbjct: 260 RMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVRDYPIK 319

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   M QV+ N+L+NA+K++  GG++ V++  T  +   ISI D G GI + ++
Sbjct: 320 SIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQ-LIISISDEGLGIPKKDL 378

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           P +   F +   A   A+ G GLGL IA+ I+  H G    +S   +G     +LP  +
Sbjct: 379 PLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 656

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLA-- 248
           +    ++    +   LF  + +    + E +DL+  +   A    D +R   E ++L+  
Sbjct: 377 LAVPVITHSGVVIGGLFFGHKQAGIFKEEHEDLVVTVASQAAVAIDNSRLFEEVKDLSNK 436

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  F+A  SHEL+TPL ++ GF +++E      +     K +     +    L  L+N++
Sbjct: 437 KDEFIALASHELKTPLTSMSGFLQILERTVPDGIA----KSFAEKALKQLAKLNELVNDL 492

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            D+S+I+AG+ +L+     L D++ E     +      N+++    +     V  D+  +
Sbjct: 493 FDISKIQAGKLQLNFEPFDLSDLLDEITDTFEQTHPHYNLKMAADGE---LLVSGDKMRL 549

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NLL NAVK+      V +    T G    IS+KD GPGI       + + F +  
Sbjct: 550 EQVLTNLLGNAVKYAPDAREVSMIAIRT-GNEVRISVKDQGPGILPENQQHIFSQFYRV- 607

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +    G+GLGL I++ I+  HGG+  + S    G      LP 
Sbjct: 608 KEQERKTSGLGLGLYISKDIIDRHGGRIWVESTPGHGATFTFSLPA 653


>gi|91975976|ref|YP_568635.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682432|gb|ABE38734.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 880

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA MSHE+RTP+NA+LG +  +    + P      +  +  IH SG  LL ++++I
Sbjct: 340 KSNFLAMMSHEIRTPMNAVLGLASNLLETKLAP----EQRRAVEGIHSSGDGLLKILDDI 395

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           L+ SR+EAGR  +     S I++V++ + M+  RA  K + I   +  +L   +  D   
Sbjct: 396 LEYSRLEAGRLSIELITFSPINVVKQSLDMIGPRAAAKGLTIRTDLSDNLPQALIGDPGR 455

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           +RQV+LNLLSNAVKFT   G + V V   S          ++ D G GI   +I ++   
Sbjct: 456 IRQVLLNLLSNAVKFTPS-GTIVVAVNCVSDDRSTARIQWTVTDTGIGIDPDKIESLFDD 514

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F Q   +I+    G GLGL I++ ++   GG   + S    G      L      +  P+
Sbjct: 515 FVQADNSIRRRFGGSGLGLAISRRLIEQMGGSINVTSTPGVGSSFNFTLALAITSDVAPK 574

Query: 484 DNHES 488
           +   +
Sbjct: 575 EESPT 579


>gi|163846472|ref|YP_001634516.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|163667761|gb|ABY34127.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
          Length = 1202

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM--GPLNNETYKEY 290
             + E R+ +EE N  KSRFL+ +SHEL+TPLN I+G S+++  E+           +  
Sbjct: 580 RAATEGRRLSEEANQLKSRFLSMVSHELQTPLNLIVGMSDLLLRESAEGTQHLPLQVRHD 639

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I+ + +HL  LI ++LDL+  +AG+  L    + L  ++R    + Q  A +K++  
Sbjct: 640 LKRIYDNARHLSRLIGDVLDLTSSDAGQLRLVCDVVDLGQVMRAVADIGQQMAADKHLIW 699

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              I      VW D   ++Q+ LNL+ NA+KFT   G V +TV  T      ++++D G 
Sbjct: 700 HDAIPAEGPWVWGDRTRLQQIALNLVVNAIKFTNR-GSVSLTVT-TEADAVTVTVRDTGI 757

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS--KLREGVEV 468
           G++  E   +   F +   +I+    G+GLGL I + ++A HGG   + S     EG   
Sbjct: 758 GLSPEEQARIFGEFQRTERSIERGYSGIGLGLAICKRLVALHGGTIGVHSSGVEGEGSAF 817

Query: 469 IAILP 473
              LP
Sbjct: 818 FFRLP 822


>gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 1096

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 7/272 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E +  +   ++ ++ AE  N +KS FLA+MSHE+RTPLNAI+G+++++   T      
Sbjct: 600 ISEQKRIEQELEKAKEDAEFANRSKSMFLANMSHEIRTPLNAIIGYAQLL---THDTELR 656

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 I  I+ +G HLL LIN+ILDLS++E+G+  L+ +   L   +   + M++ RA 
Sbjct: 657 GETHNQIEHIYSAGNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRAV 716

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K + +   +D PS + V +D + + Q+++NLL NA+KFT+  G V +     + R + +
Sbjct: 717 TKGLRLNADLDLPSPALVTSDRQKLAQILINLLGNAIKFTSE-GEVSLQCRHQADRIRLV 775

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI+  E   + T F QG         G GLGL + ++  A  GG+  + S   
Sbjct: 776 -VSDTGEGISAEEQKYLFTPFVQGVQGE-RVGSGTGLGLILVKNFTALLGGELTLESTAG 833

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            G  VI  LP    +N    D   + +   +A
Sbjct: 834 RGTRVIVSLPLHIHVNRDVSDAEATPETSTFA 865


>gi|269838216|ref|YP_003320444.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787479|gb|ACZ39622.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 538

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 12/441 (2%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVY-----AANLSLGKKVMNSDIKIGEVYVWRIWL 110
            +++     +        +      A Y               +     +  +   ++  
Sbjct: 100 AVIITGSALFPGSPVFAGIDPFTCGASYGFWRGLLIGWPAWDRLRRSRLLWSLTHAQLVA 159

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF----LS 166
            +    +   + +   +        +          +A  I ++   +            
Sbjct: 160 SLVIAVVVTVFVMAGALPQIESELSFPEELPGPAAAVAWVIISILATVSLLVALFVLISL 219

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              ++V + ++ ++      +      A AL      T        ++   QA+ + + A
Sbjct: 220 ILILLVTVLSRPVLKRTTRRVEELASAAGALRAGDLATRVPVSGEDEVARLQADFNAMAA 279

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE A       R        ++   +A++SHELRTP+  + G+ E             T
Sbjct: 280 ELERAMRELAAERDTVAHLLQSQRELVAAVSHELRTPVATLRGYLESALAH-WNEEPPPT 338

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-QE 345
            +  +  + R  + L  LI+++  LSR+EAG+  L    + +  ++R C       A + 
Sbjct: 339 LRADLAIMARETEQLQRLIDDLFTLSRVEAGQLPLRLEGVDVGTVLRRCAAAAAGLAWER 398

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +E+  ++ P L    AD   + Q++ NLL+NAV+ T  GG V +      G    + +
Sbjct: 399 SRVEVLVEVAPDLPPAHADAARLEQIVRNLLTNAVRHTPPGGLVLLGAER-DGDAIVVQV 457

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI   ++P +   F +G+ A   A  G GLGL + + +    GG   + S L +G
Sbjct: 458 SDSGEGIVPEDLPRIWERFYRGASARDDARGGSGLGLALVKELTEAMGGSVAVESTLGQG 517

Query: 466 VEVIAILPNTRVLNFIPEDNH 486
                 LP  R     P    
Sbjct: 518 SRFTVRLPLARTPAPTPPATS 538


>gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 816

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 6/259 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E   A+     T ++ ++ N  KSRF++  SHE RTPL  IL  +E+++  +    
Sbjct: 562 RDITEQHRAEEELARTLEKEKQLNELKSRFVSMTSHEFRTPLTTILSSTELLQSHS-HKW 620

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 +++  IH + + +  L+N +L LS+ EAGR E    +++L    R+ +  LQ  
Sbjct: 621 GEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAGRLEFHPQSLNLEQFCRDLVEDLQSS 680

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A E  +        + + V  DEK ++ ++ NLLSNA+K++  GG V   V  T      
Sbjct: 681 APEHQLLFSLT--GNCTQVEMDEKLLQHILPNLLSNAIKYSPRGGSVRFEVTCT-STSVC 737

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             I+D G GI   ++P +  SF +          G GLGL I +  +  HGG   + S++
Sbjct: 738 FQIQDQGIGIPAADLPHLFESFHRAKNVGN--ISGTGLGLAIVKKSVDLHGGTISVTSEV 795

Query: 463 REGVEVIAILPNTRVLNFI 481
             G   I ILP    ++ +
Sbjct: 796 GIGTTFIVILPLQLTVHSM 814


>gi|325273896|ref|ZP_08140066.1| histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100973|gb|EGB98649.1| histidine kinase [Pseudomonas sp. TJI-51]
          Length = 282

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 9/280 (3%)

Query: 211 NVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              I   QA+ D L AELE          +  D   ++  + +  KSRFL+ MSHE RTP
Sbjct: 4   AEVIARLQADNDALRAELEETNQGVLALYAELDIQAEQLRQASDLKSRFLSYMSHEFRTP 63

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L +IL  + ++  E  GPL+ E +++ +  I  + + L ++++++LDL++IEAGR  +S 
Sbjct: 64  LGSILSITGLLTDELDGPLSAEQHRQ-VTFISTATRELSDMVDDLLDLAKIEAGRISISP 122

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           +   ++D+      M +       +++  +    L  ++ D+K + Q++ N +SNA+KFT
Sbjct: 123 AWFDMLDLFAALRGMFRPIVDATAVDLIFEEPTGLPRLYTDDKKLAQILRNFISNALKFT 182

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           A  G V V+           +++D G GIA   + T+   F Q    ++   +G GLGL 
Sbjct: 183 AQ-GEVRVSAQLYGDDRIRFAVRDTGIGIAAELLDTLFEDFTQVDSPLQKRFRGTGLGLS 241

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           + +      GG+  + S+  EG     ++P         E
Sbjct: 242 LCKRFAMLLGGEVGVHSEPGEGSTFFVVIPLALAQENADE 281


>gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 664

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 10/269 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            + + +D   ++++      +  + A + N +KS F + ++HELRTPL+A++GFS+++  
Sbjct: 302 AEDKLNDYSQKIQLQNKRLQKAVEAAIKANQSKSVFFSKITHELRTPLHAVIGFSQIL-- 359

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
               P   E  K ++  ++ +G HLL +IN+ILDLS+IEAG+   S    SL+ +     
Sbjct: 360 -GKDPNLPEHLKGFVNSLYENGVHLLGMINDILDLSKIEAGKMTESREKFSLVQLWDTLF 418

Query: 337 IMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHV 391
            M   R  EK+I        ++      AD + +RQ+++NLL NA+KFT  G     V +
Sbjct: 419 SMFSYRFAEKHILFELIHPETIKNQYFEADLQKIRQILVNLLGNALKFTNQGFVNMEVKI 478

Query: 392 TVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
             G           +KD G GI + ++ ++  +F Q      S ++G GLGL I+  ++ 
Sbjct: 479 KQGLEPNIDLVSFIVKDTGIGIPKDQLHSIFEAFQQTEQG-SSYQEGTGLGLSISHQLVD 537

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             GG   + S   +G   I  LP  R+  
Sbjct: 538 FLGGTIQVDSDTNQGSTFIFELPLLRIEE 566


>gi|111021713|ref|YP_704685.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110821243|gb|ABG96527.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 460

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 150/381 (39%), Gaps = 26/381 (6%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
              +   +    R  +L      G   T+   +     T   L + +    ++ L    +
Sbjct: 105 PETVGSTDNSDVRWRVLTTTAPDGTETTVAMTLTENDETVNRLIVLQLIIGVVVLIALGV 164

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
             + +                        ++++        +      +     ++ +  
Sbjct: 165 VAYFVVRRSL-----------------RPLVEVEETAAAIASGDLHRRVPERDDRTEIGR 207

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           LS     + ++A+++ A + ++ + + A        RF+A  SHELRTPL  I GF+E+ 
Sbjct: 208 LS--VALNGMLAQIQHAFAATEASEESARRSEEKMRRFVADASHELRTPLTTIRGFAELY 265

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               M           +  I      +  L+ ++L L+R++A R  L    + L+ +  +
Sbjct: 266 RQGAMTDTET-----LMSRIEGEASRMGLLVEDLLMLARLDAQR-PLETRPVDLLSVASD 319

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +   +  A +++I +  +  P    V  DE  +RQV+ NLL+NAVK T     V V + 
Sbjct: 320 AVHGARAVAPDRSIALDVRPGPGTPEVIGDEARLRQVLGNLLANAVKHTPATADVTVRLS 379

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T  R   + + D GPG++E +   V   F +   +      G GLGL I  +++A H G
Sbjct: 380 TTE-RSVVLEVADTGPGLSEEDAARVFERFYRTDASRTRESGGSGLGLSIVAALVAAHRG 438

Query: 455 QFLIRSKLREGVEVIAILPNT 475
              + S+  EG      LP +
Sbjct: 439 SVTVDSRPGEGATFRVELPRS 459


>gi|325522091|gb|EGD00759.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia sp. TJI49]
          Length = 713

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 149/397 (37%), Gaps = 19/397 (4%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
             A   +L  +  +  +        R++         +    + L         ++ +  
Sbjct: 330 TIAIMWTLLVRFHHRMLAPVYARSQRVFDSESLCRSVIEMAPIGLGLISRADGHFMLVSP 389

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
                IA   S                   +    +   S   L + L    A A +   
Sbjct: 390 VLAERIAQLGSDYRALS-----------GQIVEQYRTRASSGPLQVDLVLPDAAADAAPL 438

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++      +  +           +          +E  + A+  N AKS FLA+MSHE+R
Sbjct: 439 HLEVIACGARYQERDVLIVAVVDVTAKRQLVRQLEEAVRAADSANAAKSSFLAAMSHEIR 498

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG  E+++   +      + +  +  +  +   LL L++ ILD S+IEAG   +
Sbjct: 499 TPLNVILGNLELLDRHALDL----SQRSRVRTLRTAAAGLLELVSGILDFSKIEAGAMSV 554

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380
                 ++ ++   +      A+ K + +F +I  S    +  D   + QV  NLLSNA+
Sbjct: 555 ESIEFDVMGVIARELGAFAPVAKAKGLSLFCEIAASRTQRMRGDPTRLAQVFGNLLSNAI 614

Query: 381 KFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           KFTA G    RV V  G        I+++D G GI   ++  +  +F Q    I     G
Sbjct: 615 KFTAQGHVTARVLVVRGECGAAELAIAVEDTGIGIGGADLHKLFKAFSQVDATITRRYGG 674

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +   ++   GG+  + S    G      +P 
Sbjct: 675 TGLGLALCDRLVTAMGGRISVTSAPGAGSCFTVRVPL 711


>gi|260770053|ref|ZP_05878986.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972]
 gi|260615391|gb|EEX40577.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972]
          Length = 868

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 9/272 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + +I EL+  +      ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +  
Sbjct: 345 NHIILELKAHEERLIHAKEEAIAANRAKSSFLANMSHEIRTPLNGIIGMTEILASSGL-- 402

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N   ++ + DI  S Q LL L+N+ILDLS+IEAG   L+ +A +  ++V + + ++ +
Sbjct: 403 --NVNQQDILDDIDTSSQSLLILLNDILDLSKIEAGSLTLNPNAFNFAEMVYDTVNLVNV 460

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A  ++IE+  ++DP L   V ADE  ++Q+++NLLSNAVKFT   G V+V V + S   
Sbjct: 461 KAISQHIELAIQLDPELPVMVVADEYRVKQILMNLLSNAVKFT-QDGYVNVEVNYVSQDT 519

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             I  S+ D G GI + ++ T+   F Q   +I     G GLGL I + ++    G   +
Sbjct: 520 PLIRCSVTDTGKGIDKDKLSTIFDPFTQEDGSITRRFGGTGLGLAICRQLLELMDGSIQV 579

Query: 459 RSKLREGVEVIAILPNTRVLN-FIPEDNHEST 489
            S    G +    +P T  L    P+  +++T
Sbjct: 580 HSTKDLGSQFEFTIPVTLPLEQPTPQPLNQTT 611


>gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 840

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 18/256 (7%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  KS+FLA+MSHE+RTP+N I+G +E+     +    N     Y+G   +S ++LL +I
Sbjct: 447 NRTKSQFLANMSHEIRTPMNGIIGMTEL----ALASCANVDCSTYLGMARKSARNLLGII 502

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILDL++IE+G+ E+ E A      +      + L A+ K +    +ID ++   +  D
Sbjct: 503 NDILDLAKIESGKVEIEEYAFDARASLEALFATMALDAERKGLRFDARIDANVPVRLKGD 562

Query: 365 EKGMRQVILNLLSNAVKFTAIGG---------RVHVTVGWTSGRGQYI----SIKDNGPG 411
           E+ + QV  NL+ NAVKFT  GG          V + +  +      +    S+ D G G
Sbjct: 563 ERRLLQVFTNLIGNAVKFTLEGGIAVKVLVADPVSLGLLESCPDPAAVCLFASVSDTGIG 622

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +I  +  SF Q          G GLGL I++ ++   GG+  + S+  +G      
Sbjct: 623 IPADQIGRIFESFAQVGGLAHLKFDGTGLGLSISKRLVELMGGKLWVESEPGKGSTFTFA 682

Query: 472 LPNTRVLNFIPEDNHE 487
           +         PE   +
Sbjct: 683 VMLKPAEAARPEPEPQ 698


>gi|307727189|ref|YP_003910402.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
 gi|307587714|gb|ADN61111.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
          Length = 720

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 155/329 (47%), Gaps = 14/329 (4%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYITYHLFKS 210
                ++  A  +    + V      +++ H++ ++           +    +     + 
Sbjct: 159 TALLILVTQAANIFLVSLFVFYILTRLVTRHLMVLAQTVEDYDFREPAEPLKLNRRAPRE 218

Query: 211 NVKILSC------QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             ++            +       E   +   E R+ AE  N AK+ FLA+MSHELRTPL
Sbjct: 219 PDELERVVTAFNSMGARLHRAYLDERDAAAEREARRSAEAANRAKAEFLANMSHELRTPL 278

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILG+++++         +  ++E +G I RSG+HLL LI + LD +RIEAGR  +  +
Sbjct: 279 NAILGYAQILRR---DASLSAGHRERVGVIQRSGEHLLALIGDALDFARIEAGRLRIEMN 335

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            + L   +     +++++  +K+++   ++ P +  +V ADE+ +RQV+LNLL+NA  FT
Sbjct: 336 DVPLAGTLDAIREIIEVKVAQKHVDFIWRVAPDVPDAVRADERRLRQVLLNLLANAFNFT 395

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V + +  ++       ++D G G+   +  T+   F Q  +  +    G GLGL 
Sbjct: 396 DQ-GSVSLLIEMSASGKVCFEVRDTGIGMDADQFQTIFEPFEQI-VHTERGTSGTGLGLT 453

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I+Q  +   G +  ++S+   G      L
Sbjct: 454 ISQQFLRAMGSEIHLQSQPGRGSVFWFEL 482


>gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1060

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 25/256 (9%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             R++ E     K  F++ +SHELRTPL AI G   ++          E  K+ I      
Sbjct: 807  ERRQIE---QMKKDFISVVSHELRTPLTAIHGSLGLLAAGVYDNK-PEKGKKMIHIAATQ 862

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               L+ L+N+ILDL R+E+G  +L   +     ++++ + +++ +A+E  + +     P 
Sbjct: 863  TDRLVRLVNDILDLGRLESGNLQLVMKSCQTATLMQQAVEVMRPKAEENQVTLSVI--PL 920

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-------------------TSG 398
               VWAD   + Q + NLLSNA+KF+     + V                          
Sbjct: 921  DVFVWADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELMSIDDNIKVWQKKTPSLALLPS 980

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  ++D G GI   ++  +   F Q   +    + G GLGL I ++I+  H GQ   
Sbjct: 981  PYVLFQVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGGTGLGLAICRTIIEQHKGQIWA 1040

Query: 459  RSKLREGVEVIAILPN 474
             S L +G      LP 
Sbjct: 1041 ESVLGKGSIFYFTLPV 1056


>gi|83814131|ref|YP_444239.1| sensory box histidine kinase/response regulator [Salinibacter ruber
           DSM 13855]
 gi|83755525|gb|ABC43638.1| sensory box histidine kinase/response regulator [Salinibacter ruber
           DSM 13855]
          Length = 712

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G ++   +    +      + +  L  +        E E A++ ++  R +AEE    KS
Sbjct: 413 GAISGFDTHLIEVLGSYATTTLDRLDREKALRAAKEEAERARTEAEVARDQAEEAARLKS 472

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPL +I+GF+E +  E      N     + G I RSG+ LL+ ++ +L+
Sbjct: 473 AFLANMSHEIRTPLTSIIGFAEALGDEVGDGNGN--TGRFAGLIERSGRRLLDTLDGVLN 530

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LS++EAG+  L    + L+   R     L+ +A EK + +  +         AD   ++ 
Sbjct: 531 LSKLEAGQMGLETEPVDLVTKARRAAEELRPQATEKGLGLTVETGRPEVWARADAGSVQI 590

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ NL+SNA+K+T  GG VHV V         + ++D G G+       +   F Q S  
Sbjct: 591 VLQNLVSNAIKYTEEGG-VHVRVFR-ENGWAVLEVEDTGIGMDPALADDLFKPFRQASEG 648

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +  A +G G+GL + Q      GGQ  + ++   G      LP        PE  
Sbjct: 649 LGRAYEGSGVGLAVTQKATEEMGGQVDVETEAGAGSCFTVRLPEA----TSPEAE 699


>gi|77460196|ref|YP_349703.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384199|gb|ABA75712.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1214

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 134/269 (49%), Gaps = 9/269 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E           ++RA++ N AKS FLA+MSHE+RTP+NA++G  E+          +
Sbjct: 693 ISERRELLDELRAAKERADDANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRMDQTHPD 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  I   + S + LL LI +ILD++RIE+GR  L+   I+LID V   + + +  A+
Sbjct: 753 ---RSGIETAYHSAKDLLGLIGDILDIARIESGRLSLTPERINLIDTVGSVVRIFEGLAR 809

Query: 345 EKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG--- 398
           +K + +   + P      V  D    +QV+ NL+SNA+KFT  G  R+ + V  T     
Sbjct: 810 QKQLSLAVSVSPPELNVDVHLDPLRFKQVLSNLISNAIKFTEAGHIRITLDVLPTDDPER 869

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++++D+G GI   +   +   F Q +   +    G GLGL I++++    GG+  +
Sbjct: 870 SMVQLTVQDSGIGITTQDQSRLFEPFAQAANGGQRTFSGAGLGLVISRNLCEMMGGKLRL 929

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            S    G +V   LP   +   +     E
Sbjct: 930 SSLPGIGTQVSVSLPVVILPAQVARAEDE 958


>gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 475

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 12/240 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL ++  + E +E   +   + ET   +IG        ++
Sbjct: 222 DKAERERRLFVSNVSHELRTPLTSVKAYLEALEDGAID--DKETASSFIGVSLTETNRMI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDI-------VRECIIMLQLRAQEKNIEIFQKID 355
            +I+++L LSR++  R  L++  I+LI         + + +          N  + +K  
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D   + QVI N++ NA+K++  GG + + V  T  R   ISIKD G GI + 
Sbjct: 340 DKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITIYVE-TRERDVLISIKDEGMGIPKS 398

Query: 416 EIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  +   F +    +  S   G GLGL I   I+  HGG     S+   +G      LP
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|83815151|ref|YP_445365.1| histidine kinase PhoR1 [Salinibacter ruber DSM 13855]
 gi|83756545|gb|ABC44658.1| histidine kinase PhoR1 [Salinibacter ruber DSM 13855]
          Length = 596

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 138/260 (53%), Gaps = 8/260 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++      L  AK  ++  R RA E + AKS FLA+MSHE+RTPL +I+GF++ I  E  
Sbjct: 321 DRLQQEQVLRSAKEQAERARARAVEASKAKSAFLANMSHEIRTPLTSIIGFADAIGEEIQ 380

Query: 280 GPLNNE------TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
              +            +   + + G+ LL+ ++ +L+LS++E+G+ EL+E A+ L++  R
Sbjct: 381 SLKDCPDEANIVQLDRFSELVGQGGKRLLDTLDAVLNLSKLESGQIELAEEAVDLVEKTR 440

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L+  AQEK++ +  ++D       ADE G++ V+ NLLSN +K+T  GG V V V
Sbjct: 441 QVAEELRPSAQEKDLCLDLQMDADEILARADEGGVQIVLQNLLSNGIKYTEEGG-VQVRV 499

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T+     + ++D+G G+       +   F Q S  +    +G G+GL + +  +    
Sbjct: 500 HRTAED-AVLEVEDSGIGMEPERAEALFEPFRQASEGLSRKFEGSGVGLAVTKKAVEQMD 558

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G+  + ++  +G   +  LP
Sbjct: 559 GRVDVETEKGKGSRFVVRLP 578


>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1354

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 130/331 (39%), Gaps = 32/331 (9%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
               + + +      +   + + +   L  A     +I              + ++  +  
Sbjct: 775  ITSLEITILPPFWATGWAIALYIIIGLLFAYGIMWFI-------------LRIQQKKMEQ 821

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            E E A            E +  K RF  ++SHE RTPL  IL   E +         N  
Sbjct: 822  EKEKAIVRKQH------EVDEMKLRFFTNVSHEFRTPLTLILTPLEKLMKT----EENAE 871

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             K+ +  I+R+   LL L+N++LD  +I+     L  S   ++  VR+     +  +++K
Sbjct: 872  TKQILRLIYRNADRLLKLVNQLLDFRKIDVQGDTLVLSTGDIVPFVRDVAYSFKELSEQK 931

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQY 402
            +I        +   +  D   + +++ NLLSNA KFT  GG + VT+             
Sbjct: 932  HIRFSFSSVFTSLPMRFDTDKVFKIVSNLLSNAFKFTPEGGMITVTLSLLPDKEGRNKLL 991

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I + D+G GI   +   +   F Q S + K     G G+GL + +  +  H G   I+S+
Sbjct: 992  IEVSDSGIGIPADKQEAIFDRFYQVSSSDKGNPVMGTGIGLHLCREFVRMHQGSIAIKSQ 1051

Query: 462  LREGVEVIAILPN----TRVLNFIPEDNHES 488
               G      LP      + +   P++  E+
Sbjct: 1052 PGVGSTFTVTLPVIPQDHQDIISSPDEGEEN 1082


>gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1343

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 19/323 (5%)

Query: 166  SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL--SCQAEKDD 223
            ++  +V A +T +I S HV  + +        +++ Y  Y L  +   IL    +  +  
Sbjct: 741  TYTLIVNASNTSSIWSPHVHSLRIVISPPLWATWWAYTAYALLLTGAIILFVRVRINRIR 800

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            + + +E+ +  S + +      +  KSRF A+++HE RTPL  IL   E    + +    
Sbjct: 801  MRSLIELRERESIQLKH----LDEVKSRFFANITHEFRTPLTLILTPLE----QVLNESA 852

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  Y   +  I+R+   LL LINE+LDL++++AG   LS +   L + +   +++     
Sbjct: 853  DSPYHNRLSLIYRNANRLLRLINELLDLAKLDAGNLTLSPAPADLQEFITRTVLVFTDEV 912

Query: 344  QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398
            Q K+I++ Q    S    W D   + +++ NLL NA+KFT   G ++V    +S      
Sbjct: 913  QRKHIQLVQTHHFSQPYYWFDSDKVEKILTNLLMNALKFTDEHGSINVETAVSSTNLTAS 972

Query: 399  ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    + +++ G GI + ++P +   F Q     + +  G G+GL + + ++    G
Sbjct: 973  SAPVDLIKLVVQNTGTGIPKHQLPHIFNRFYQADPMTEQSVGGSGIGLALVKELVELMKG 1032

Query: 455  QFLIRSKLREGVEVIAILPNTRV 477
               + S L  G      LP  + 
Sbjct: 1033 TIRVESDLYSGTTFTVELPCRQA 1055


>gi|326627964|gb|EGE34307.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 936

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL   G      L I          ++  +++            P+   + 
Sbjct: 285 LHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWHFVD 344

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                +   L   L       L         L  +       Q + D+L  ++       
Sbjct: 345 VINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDT------LQVQYDNLENKVAERTQAL 398

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 399 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 454

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD S IE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 455 NCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 514

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 515 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 572

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 573 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 628

Query: 475 TRVLNFIP 482
                  P
Sbjct: 629 QEYQPPQP 636


>gi|315182576|gb|ADT89489.1| hypothetical protein vfu_B01304 [Vibrio furnissii NCTC 11218]
          Length = 886

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 9/272 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + +I EL+  +      ++ A   N AKS FLA+MSHE+RTPLN I+G +E++    +  
Sbjct: 363 NHIILELKAHEERLIHAKEEAIAANRAKSSFLANMSHEIRTPLNGIIGMTEILASSGL-- 420

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N   ++ + DI  S Q LL L+N+ILDLS+IEAG   L+ +A +  ++V + + ++ +
Sbjct: 421 --NVNQQDILDDIDTSSQSLLILLNDILDLSKIEAGSLTLNPNAFNFAEMVYDTVNLVNV 478

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A  ++IE+  ++DP L   V ADE  ++Q+++NLLSNAVKFT   G V+V V + S   
Sbjct: 479 KAISQHIELAIQLDPELPVMVVADEYRVKQILMNLLSNAVKFT-QDGYVNVEVNYVSQDT 537

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             I  S+ D G GI + ++ T+   F Q   +I     G GLGL I + ++    G   +
Sbjct: 538 PLIRCSVTDTGKGIDKDKLSTIFDPFTQEDGSITRRFGGTGLGLAICRQLLELMDGSIQV 597

Query: 459 RSKLREGVEVIAILPNTRVLN-FIPEDNHEST 489
            S    G +    +P T  L    P+  +++T
Sbjct: 598 HSTKDLGSQFEFTIPVTLPLEQPTPQPLNQTT 629


>gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris]
          Length = 1046

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 24/297 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 296 LRVANEELEEQSRSLQQSQSDLEQQQAELEQTNVQLEERTQALEAQKQALLVAQGQLVRN 355

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++       L  E  K Y   IH S 
Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVK-YAQAIHSSN 414

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  ELS+  +++  +V+      +  A++K +++    D + 
Sbjct: 415 NDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLEISADAAA 474

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            + +  D + ++Q++ NLL+NA+KFT   G+V + V           + D G GIA  + 
Sbjct: 475 PTQLVVDNQRLQQILKNLLANAIKFT-EHGQVSLAVQSHGNGRVRFVVCDTGIGIAREQN 533

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP 
Sbjct: 534 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDSEPGRGSCFTLELPV 590


>gi|297582643|ref|YP_003698423.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141100|gb|ADH97857.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 469

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 148/338 (43%), Gaps = 14/338 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           ++I       +  A         V+  T   +   +L + L  +    LS    +     
Sbjct: 132 VTIDGTVAGYVVMAAPSGMILGTVSQLTNQFVIGGLLSVVLTMVTVFFLSRVVSLPLRQM 191

Query: 209 KSNVKILS-------CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
               + L+          +++D + ELE+A     +     E+    ++ FLA ++HEL+
Sbjct: 192 TEATRDLAKGEMHVTLGYDRNDELGELELAIRQLAQ---DLEKVKQERNEFLAGIAHELK 248

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  + G++++ +    G  +      Y+  I      L  L+ ++ DL+++++  + +
Sbjct: 249 TPLTYVKGYADMAKRADTGEAD---RARYLAIIEEEAASLTRLVGDLFDLAKLDSNSFAI 305

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
            +  + L D++R     L   A+E+N  +   I+  +  V ADE  + QV+ NL  NA++
Sbjct: 306 EKGTVDLSDVLRGFCRDLAPVAKERNRLLAGDIEDRI-RVKADECRLIQVLRNLTDNAIR 364

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++     V V++         +++ D G GIA+  +P +     +   +      G G+G
Sbjct: 365 YSDEDSAVTVSLTRAGDGRILLAVADEGAGIAKHHLPYLFDRLYRADPSRSRETGGSGIG 424

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           L I ++I+  HG     +S++ +G  +   +P   VL+
Sbjct: 425 LSIVKAIVDQHGWAIEAKSEVNKGTVMTVTIPKGDVLD 462


>gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 1054

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 159/402 (39%), Gaps = 26/402 (6%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
            ++ +   A      +      +        +  +L  +           +        E
Sbjct: 319 LVLLMISVAGCFVYMRWYNRRVVAP--AQEAQREILASEAFNRTLIETAPVALCLIDRSE 376

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              I+ +A  L  L +              +      A+ T      +V        L  
Sbjct: 377 ATLIFANALALDWLGVD-----------EEARPHQNDAIKTLFSQLQNVEQGGAIERLTL 425

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
             +   Y+ Y   +   + +   A  D  ++     +      ++ A+E N AKS FLA+
Sbjct: 426 PDARIVYVVYAPTRYRQQAVILCAFTD--VSAHAEMEKHLTWAKQAADEANDAKSTFLAT 483

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL   LG  E++ L  +        ++Y+  I  + Q LL +I++ILD+S+IE
Sbjct: 484 MSHEIRTPLYGALGTLELLSLTQLNN----QQRQYVDRIESASQMLLQIISDILDISKIE 539

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ +L +S  +  ++V+EC       A  K + +F  I   +   V  D   +RQ++ N
Sbjct: 540 AGQLQLDKSEFNPRELVQECTGTYAGMAHRKGLLLFSIIATDIPERVIGDPARIRQILNN 599

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+SNA+KFT   G V V +             + + D+G GI + E   + T F      
Sbjct: 600 LISNAIKFT-EIGTVVVRLSQLERSSLSAKFLLEVCDSGVGIDKAEQEKLFTPFYMIDAE 658

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              A  G GLG+ I   +      +  +RS+ + G +    L
Sbjct: 659 RNMA-GGAGLGMSICARLAELMDTKIQLRSEPQIGSQFSVEL 699


>gi|225388288|ref|ZP_03758012.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
 gi|225045635|gb|EEG55881.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
          Length = 1111

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 10/268 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +      D+   E E  +       + A   ++AKS+FL++MSH++RTP+NAI+G + +
Sbjct: 567 AILLSRRIDEQRYEEEQKRQALQSALEGARAASMAKSQFLSNMSHDIRTPMNAIMGMAAI 626

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                   +      E +  I  S QHLL+LIN+ILD+S+IE+G+  L E   +  ++V 
Sbjct: 627 ASTRLDDRV---RVAECLKKISLSSQHLLSLINDILDMSKIESGKLSLREEPFNFAELVA 683

Query: 334 ECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
               ++  +A    +E+   +   S   V  D   +RQV LN+LSNAVK+T  GGRV + 
Sbjct: 684 NVTELMVPQAIAAQLEMNVSLPVLSQEEVVGDALRVRQVYLNILSNAVKYTEAGGRVQIE 743

Query: 393 VGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           V    G     R  +    D G G++   +  +   F + + +      G GLG+ I ++
Sbjct: 744 VWEEPGSRGGRRNFFFRCTDTGIGMSGDFLEHLFQPFERAADS-ADKASGTGLGMAITRN 802

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475
           I+    G   + S+  EG     +LP  
Sbjct: 803 IVDLMSGDIQVESRPGEGSRFTVMLPLQ 830


>gi|225388358|ref|ZP_03758082.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
 gi|225045581|gb|EEG55827.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
          Length = 972

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   ++   + +  D++ + +  K         AE+ N AKS FL+ MSHE+RTP+NA
Sbjct: 640 ISRELKRVCMARTDVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNA 699

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S +         ++E   + I  I  S + LL+LIN+ILD+SRIE+G+  L    I
Sbjct: 700 IIGMSTIAAQHIG---DDEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKI 756

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
              + +     +   +A  K ++     DP L   +  D   ++QV++N+LSNA+KFT+ 
Sbjct: 757 PTEEFLNGINSICYAQAASKGVDYECIADPVLDDYYVGDAMKLQQVLINILSNAIKFTSE 816

Query: 386 GGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG+V  +                + D G G++E  IP +   F Q S    +   G GLG
Sbjct: 817 GGKVTFSASQRKKTKNDAVLRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTAVYGGTGLG 876

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I+++I+    G+  +RS    G E   
Sbjct: 877 LAISKNIVDMMDGRITVRSIKGIGTEFTV 905


>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia tasmaniensis Et1/99]
 gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
           [Erwinia tasmaniensis Et1/99]
          Length = 951

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 136/263 (51%), Gaps = 10/263 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A +++ +SL +  ++ AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +   
Sbjct: 447 DVSARVKMEQSLHEIAKE-AEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAG 505

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                   +  ++ S   LL +I++ILD S+IE+ + ++     S  +++          
Sbjct: 506 AE----SLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAM 561

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K + ++  I+  +  +   D   ++QVI NLL+NA+KFT  GG + + V +  G   
Sbjct: 562 VVKKRLTLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGG-IILQV-YVKGDYL 619

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              ++D+G GI+  E+  +   F Q    ++   QG GLGL I + +M    G   + S+
Sbjct: 620 TFCVRDSGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSE 679

Query: 462 LREGVEVIAILPN--TRVLNFIP 482
              G + +  +P   + V+   P
Sbjct: 680 PDMGSQFVVRIPLYNSHVMKLEP 702


>gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 139/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAI-MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I +   +  +  AG +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIVIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+   G +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELE-YSVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|118478526|ref|YP_895677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196042701|ref|ZP_03109940.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225865179|ref|YP_002750557.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229185457|ref|ZP_04312639.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
 gi|118417751|gb|ABK86170.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196026185|gb|EDX64853.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225790052|gb|ACO30269.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228598045|gb|EEK55683.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
          Length = 458

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELEF-SVIISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 RVELPK 458


>gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 816

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 6/318 (1%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   L     L         +      +   D+    +   A    T I    +    +
Sbjct: 220 FAAARLFLQDALPGSVYYGPEANLRFADLAGFDLEAVKLRGEAGDVLTCIGERWYSITAQ 279

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +   + K   I       + +   R++AE    AK+ FLA+MSHE+RTP+++I G +E+
Sbjct: 280 EMLDVSRKFVGIVVTFHDVTEARRAREQAEALARAKTDFLATMSHEIRTPIHSIGGVTEL 339

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++   +   +    + Y+  I RS + L ++++++LD +RIE+G  EL +   S+  I+ 
Sbjct: 340 LKQSELASRD----RGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILD 395

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +   M+Q   + K           L  V  D   +RQ+++NL SNAVKFT   G V +  
Sbjct: 396 DVARMMQPLVRRKPQLRIVIERTDLPPVLGDAGKLRQILINLTSNAVKFTPE-GTVVIGA 454

Query: 394 GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              +G  ++  ++ D GPGIA  ++  +   + Q   +I     G GLGL I + +  + 
Sbjct: 455 ERLAGGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHL 514

Query: 453 GGQFLIRSKLREGVEVIA 470
           GG+  +RS    G     
Sbjct: 515 GGRLDVRSTPGFGSRFTL 532


>gi|325660729|ref|ZP_08149357.1| hypothetical protein HMPREF0490_00089 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472803|gb|EGC76013.1| hypothetical protein HMPREF0490_00089 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 450

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DET 238
             +L   +   L      +    +   +    I     E        E    L    D  
Sbjct: 149 RKLLPYIIGIFLLMVAGAYLLAKWQTKRLIDPINHLDLEHPLENDVYEELTPLLQGIDVQ 208

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +  E+    +  F A++SHEL+TPL +I G++E+++   + P   E  K +   I+   
Sbjct: 209 NREKEKAAEMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRP---EDMKGFSERIYNEA 265

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ L+ +I+ +S+++    EL +  + L  +VRE    L  +A++K+I          
Sbjct: 266 SRLITLVEDIIKISKLDEKSIELEKQEVDLYLLVREICTRLAPQAEKKSIRFEV--SGEH 323

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            S     + + ++I NL  NAVK+   GG+V V  G T    + I ++D G GI E E  
Sbjct: 324 VSYNGIRQILDEMIYNLCENAVKYNVKGGKVSVWTGNTLEGPKVI-VEDTGIGIPEEEKE 382

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            V   F +   +      G GLGL I +     H  +  I S L +G ++  I 
Sbjct: 383 RVFERFYRVDKSHSRENGGTGLGLSIVKHGALLHDAKIQISSNLGQGTKIELIF 436


>gi|188991538|ref|YP_001903548.1| Sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733298|emb|CAP51497.1| Sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           campestris]
          Length = 726

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 172/455 (37%), Gaps = 56/455 (12%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF---TQNPIFPMWSLITLAVYAAN 86
           K        + H ++L R    + +  L ++ +G  +     + +   W    L      
Sbjct: 9   KRRLSGRADSEHAQNLIR----IIITTLFISYLGWRYQHTHGDTLMATWL--ILVGELLV 62

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
                  +    ++          L+G +    C   +  ++     P          + 
Sbjct: 63  SLGLMVAILLRPQVSHTRR-----LIGMLLDYTCTAAIMAIQ---GEPASPLYAVCMWVT 114

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +   SN++       S   +   L +    +   L   L   L     +F  +   
Sbjct: 115 IGNGLRYGSNYLRAATAMGSLCFLGAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRA 174

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +                              + A   N AKSRFLA+MSHE RTPLN 
Sbjct: 175 MTR----------------------------AVREARHANQAKSRFLANMSHEFRTPLNG 206

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           + G +EV+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     
Sbjct: 207 LSGMTEVLATTRL----DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDF 262

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
           SL +++    ++LQ +A+ + +E   ++   +  +   D   +RQV+LNL+ NAVKFT  
Sbjct: 263 SLREMIGSVNLILQPQARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFT-E 321

Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G V + V   SG           ++D G G+     P +  +F Q  + +    +G GL
Sbjct: 322 HGHVLLRVTRVSGSAEDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGL 381

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G  IA+ ++   GG    +     G      LP  
Sbjct: 382 GTTIAKGLVEAMGGSIGFKENQPSGSVFWFELPMA 416


>gi|16329279|ref|NP_440007.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|2507379|sp|P20169|DSPA_SYNY3 RecName: Full=Drug sensory protein A
 gi|288420|emb|CAA51377.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|1651759|dbj|BAA16687.1| drug sensory protein A [Synechocystis sp. PCC 6803]
          Length = 663

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 12/238 (5%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L+    KE++   +     L  
Sbjct: 418 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLSEVERKEFLETANHETDRLSR 476

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+ +      A+ L  ++ + +   QL A++K +++ + +DP L     
Sbjct: 477 LVNDVLDLSKLESSKI-YQLDAVDLYQLIEQSLRSYQLNAKDKQLQLEKILDPDLPFALG 535

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------GWTSGRGQYISIKDNGPGIAE 414
           +   + QV+ NL+ N+ KFT  GG++ V                    + I D G GI  
Sbjct: 536 NYDLLLQVMTNLIGNSFKFTKAGGKIIVRAYPLHRSNLRAEDGPGLVRVEISDTGIGIDP 595

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   +   F +         +G GLGL I ++I+A H  Q  + S++  G      L
Sbjct: 596 EDQAAIFERFYRVEN-RVHTLEGTGLGLSIVKNIIAKHQSQIHLVSEVGVGTTFWFDL 652


>gi|296451603|ref|ZP_06893337.1| probable two component histidine kinase [Clostridium difficile
           NAP08]
 gi|296878849|ref|ZP_06902849.1| probable two component histidine kinase [Clostridium difficile
           NAP07]
 gi|296259521|gb|EFH06382.1| probable two component histidine kinase [Clostridium difficile
           NAP08]
 gi|296430121|gb|EFH15968.1| probable two component histidine kinase [Clostridium difficile
           NAP07]
          Length = 618

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 125/238 (52%), Gaps = 2/238 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHRS 297
           ++  EE +  +  F A++SHELRTP+N I    +VIE +      +N+T K  +G I ++
Sbjct: 353 KRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQN 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  +L L+N ++D ++I++G  +       +I  + E  + +   A + NI++    +  
Sbjct: 413 GNRILRLVNNVIDFTKIQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIE 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+  D + + ++ILNLLSN +K+    G++++ + +       + I D+G GI + +I
Sbjct: 473 EFSMLFDSEKLERIILNLLSNGIKYNKEDGKINIFL-YVKDNVFNMKISDSGIGIPKEKI 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F Q    +    +G G+GL + +S++  H G   ++S+L  G E I  LP  
Sbjct: 532 DKIFNRFEQIDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGVGSEFIVSLPVR 589


>gi|229186930|ref|ZP_04314085.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
 gi|228596667|gb|EEK54332.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
          Length = 484

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +++ DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVTVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|255655601|ref|ZP_05401010.1| putative two-component histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 618

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 125/238 (52%), Gaps = 2/238 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHRS 297
           ++  EE +  +  F A++SHELRTP+N I    +VIE +      +N+T K  +G I ++
Sbjct: 353 KRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQN 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  +L L+N ++D ++I++G  +       +I  + E  + +   A + NI++    +  
Sbjct: 413 GNRILRLVNNVIDFTKIQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIE 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+  D + + ++ILNLLSN +K+    G++++ + +       + I D+G GI + +I
Sbjct: 473 EFSMLFDSEKLERIILNLLSNGIKYNKEDGKINIFL-YVKDNVFNMKISDSGIGIPKEKI 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F Q    +    +G G+GL + +S++  H G   ++S+L  G E I  LP  
Sbjct: 532 DKIFNRFEQIDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGVGSEFIVSLPVR 589


>gi|152972133|ref|YP_001337279.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896716|ref|YP_002921461.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150956982|gb|ABR79012.1| aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549043|dbj|BAH65394.1| aerobic respiration sensor-response protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 779

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 448

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 449 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 508

Query: 474 -NTRVLNFIPEDN 485
               V + + ED+
Sbjct: 509 IAEEVEDTLAEDD 521


>gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC
           27126]
          Length = 1033

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+GFS+++  E +     E  K ++  I+RS + LL+L+N+ILD +++
Sbjct: 491 NMSHEIRTPMNAIIGFSDLMLGEAL----REEQKSHLTTINRSARSLLHLLNDILDSAKL 546

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           + G+ +L      + + +   I    L A+ K + +   +D S+++      + MRQV+ 
Sbjct: 547 DKGKLDLDYRDFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLN 606

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NAVKFT   G V + V  +  +  Y  + D G G+ + ++  V   F Q   ++  
Sbjct: 607 NLIGNAVKFTHE-GEVTINVK-SDEKYVYFDVTDTGIGMTQEQVERVFDPFSQADASMSR 664

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              G GLG  I++ ++   GG     S+  +G      LP   V
Sbjct: 665 KYGGTGLGTTISKQLVELMGGNICATSEKGKGTTFTFRLPLEVV 708


>gi|229019900|ref|ZP_04176697.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
 gi|228741390|gb|EEL91593.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
          Length = 484

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR  E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLRESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVHLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTV-LSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|124009092|ref|ZP_01693775.1| alkaline phosphatase synthesis sensor protein PhoR [Microscilla
           marina ATCC 23134]
 gi|123985306|gb|EAY25226.1| alkaline phosphatase synthesis sensor protein PhoR [Microscilla
           marina ATCC 23134]
          Length = 364

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 161/359 (44%), Gaps = 23/359 (6%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
             +LL+++SI+ ++         +S   ++V  +     S  +   +L  ++   ++   
Sbjct: 5   IVSLLLSVSIAIVTTAFTSLLSGVSTVALLVCFTMAFFSSYLLFYFALEFLVFREINEAY 64

Query: 202 YITYHLFKSNVKILSCQAE---------KDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
            +   L K + KI   +++           ++       +   D  ++      + +  F
Sbjct: 65  RMIEKLRKKDFKIAKKRSKPLLSFVKKLNQEIYTYGANKQKEIDHLKQM----EVFRREF 120

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQHLLNLINEILDL 311
           LA +SHEL+TP+ A  GF   +     G +++E  ++ ++    +S   L  +I ++L L
Sbjct: 121 LADVSHELKTPIFAAQGFLHTLLD---GAIDDENVRDKFLLKAVKSLDGLNTMIQDLLTL 177

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S++EAG   +      +  + R+    L+ +A ++ I +          V+AD K +RQV
Sbjct: 178 SKMEAGFITMDYDIFDISQLTRDVFEQLEEQAAQRKITLRFDQPYQEVMVYADAKRIRQV 237

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           I+NLL NA+K+ +  G V V    +      I +KD+GPGI+   +  +   F +   + 
Sbjct: 238 IINLLENAIKYGSKNGNVEVGFSNSEQNLLDIMVKDDGPGISVEHLDRIFERFYRVEKSR 297

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              + G GLGL I + I++ H  +  + SK+++G      L         P DN E T+
Sbjct: 298 SKDKGGSGLGLAIVKHILSAHDTEIKVNSKVKKGTAFTFQL------QTTPVDNEEITK 350


>gi|331085548|ref|ZP_08334632.1| hypothetical protein HMPREF0987_00935 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407435|gb|EGG86937.1| hypothetical protein HMPREF0987_00935 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 450

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DET 238
             +L   +   L      +    +   +    I     E        E    L    D  
Sbjct: 149 RKLLPYIIGIFLLMVAGAYLLAKWQTKRLIDPINHLDLEHPLENDVYEELTPLLQGIDVQ 208

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +  E+    +  F A++SHEL+TPL +I G++E+++   + P   E  K +   I+   
Sbjct: 209 NREKEKAAEMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRP---EDMKGFSERIYNEA 265

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L+ L+ +I+ +S+++    EL +  + L  +VRE    L  +A++K++          
Sbjct: 266 SRLITLVEDIIKISKLDEKSIELEKQEVDLYLLVREICTRLAPQAEKKSVRFEV--SGEH 323

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            S     + + ++I NL  NAVK+   GG+V V  G T    + I ++D G GI E E  
Sbjct: 324 VSYNGIRQILDEMIYNLCENAVKYNVKGGKVSVWTGNTLEGPKVI-VEDTGIGIPEEEKE 382

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            V   F +   +      G GLGL I +     H  +  I S L +G ++  I 
Sbjct: 383 RVFERFYRVDKSHSRENGGTGLGLSIVKHGALLHDAKIQISSNLGKGTKIELIF 436


>gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 947

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 5/319 (1%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L   V  S          + + +     I L+     A   F  I   L          
Sbjct: 475 RLLVEVPGSALASAFDAYARVVETGEPARIELSCAHEGAPRTFRAIAVALGDGVGLSFHD 534

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             E+    AE           R+ AE+ N  K  FLA++SHELRTPL +ILG++ ++   
Sbjct: 535 ITEQKRADAERAQLLDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWARILRT- 593

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G ++ E+ +  +  I R+ +    LI ++LD S I AG+ +L    + +  ++   + 
Sbjct: 594 --GEVDAESLERGLATIERNAKAQSQLIEDVLDASTILAGKLQLRTDPVDVRQVLATALD 651

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +++  A  K + +   +   +     D + ++QV+ NLL+NAVKFT  GG+V   +    
Sbjct: 652 LVRPAALAKGVAVDTSVADDVGIFLGDAERLQQVVWNLLANAVKFTPSGGQVR-ALARRV 710

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++DNG GI +  +P +   F Q    +  A  G+GLGL I + +    GG   
Sbjct: 711 EATLEVEVEDNGEGIPKSFLPFLFERFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVH 770

Query: 458 IRSK-LREGVEVIAILPNT 475
             S    +G      LP  
Sbjct: 771 AESDGEGKGARFRVRLPIR 789


>gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1336

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 148/312 (47%), Gaps = 8/312 (2%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            + +     + L  +     +++ Y+ Y +  S++ +      +     + ++A       
Sbjct: 765  VWTDAPARLKLRILPPWYRTWWAYLIYGILASSLLLWYKIVSRRQRELKNKIALEQV--A 822

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHRS 297
            +++ +E    K  F  ++SHELRTPL  I+  +E +++    G       +E    +++ 
Sbjct: 823  KEKEKELAELKVNFFTNVSHELRTPLTLIMSPAEYLMKNAPTGT----EAREKAELLYKQ 878

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               LL L+N++++  ++E+G  EL+   + L+ ++ E  ++ +++A E+NI     +  +
Sbjct: 879  ANKLLVLVNQLMNFRKVESGHVELALQTLDLLPLITEVYLLFKIKADEQNIHYDLNLPST 938

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGE 416
               +  D + M  V+ NLLSNA KFTA GG++ V+      +  + +SI DNG GI E E
Sbjct: 939  PVYIDFDPEKMEIVLSNLLSNAFKFTAEGGKIEVSGQIDQEQSTFQLSISDNGIGIHEEE 998

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +  +   F Q          G G+GL +    +   GG  +++S L +G      LP + 
Sbjct: 999  VEHIFEPFYQAYKQNTVKTTGTGIGLSLVHEFVKRQGGHIMVKSSLGQGTRFTIDLPLSL 1058

Query: 477  VLNFIPEDNHES 488
                I +++  +
Sbjct: 1059 QTPSIEKESSPA 1070


>gi|254512486|ref|ZP_05124553.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
 gi|221536197|gb|EEE39185.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
          Length = 343

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 8/239 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A++GF E +        +      ++  +      +
Sbjct: 107 LEQAGQMRRDFVANVSHELRTPLTALMGFIETLRGPARD--DTAARDRFLQIMTDEANRM 164

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L L+R+E+      +  + L  ++R  +  L+  A + ++ +          +
Sbjct: 165 NRLVGDLLSLNRVESEERVRPKEPLKLTGLIRSTLNTLKPLADDASVRLSLDAPDEPVEM 224

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEG 415
             D   +RQV  NL+ NA+K+   GG V V V  +            I I D GPGI   
Sbjct: 225 VGDSDQLRQVFTNLVENAIKYGGSGGVVDVIVTLSERDTAMRGPAVRIKIVDQGPGIDAK 284

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +P +   F +          G GLGL I + I+  H G+  + S+L +G     ILP 
Sbjct: 285 HLPRLTERFYRADSHRSRELGGTGLGLAIVKHILNRHRGRLRVESELGQGAVFTVILPR 343


>gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 432

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 22/310 (7%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----ETRKRAEEENL 247
           +          + +   +  + +    +E+      ++ +    +    E  +     N 
Sbjct: 127 LPVPVEMTLRIVEHREVRQAIVVARDISERKRSEESMKKSHDELEVRVRERTRELARANK 186

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY--------------IGD 293
           AK+ FL+ +SHELRTPL +I+GF+++I  +    +     ++               I  
Sbjct: 187 AKTEFLSIVSHELRTPLTSIIGFAKIIRKKLAERVFPAVDRDRDPKLCKEMDRIGKNIDI 246

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I   G+ L  LIN++LDL+++EA + E     ++  + +R  +       Q   +    +
Sbjct: 247 IEAEGERLTALINDVLDLAKLEANKVEYRMEPLAPAEFLRPAMDSSSALFQASEVLFLNE 306

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           + P L  V  D   + QV++NL SNA KFT   G V        G    +S+ D G GI 
Sbjct: 307 VGPDLPQVMGDRHRLIQVMVNLFSNAAKFTRQ-GSVTCRAELV-GAHLRVSVVDTGAGIP 364

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + +  ++   F QG  ++     G GLGLPI + I+ +H G   + S   +G   +  LP
Sbjct: 365 QEQQTSIFDKFIQGQESLTDRPTGTGLGLPICRQIIKDHQGHLWVESAPGQGSRFLFTLP 424

Query: 474 NTRVLNFIPE 483
              + +  PE
Sbjct: 425 V--IADAKPE 432


>gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1053

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            L+     S+ +    L  +  +    +        +    +    A +     EL   +
Sbjct: 374 ILAGFVQRSIWITLAGLLAIFMSVTGLYLLRQRQQLQQRAHLEELVAAR---TLELRQLE 430

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  + AE    AKS FLA+MSHE+RTP+NAILG + ++  +      NE     +G
Sbjct: 431 VELAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRRDGATATQNER----LG 486

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  + +HLL ++N+ILDLSRIE+GR +L ++  +L  ++ +   ++   AQ K + +  
Sbjct: 487 KIESATRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSKGLTLSI 546

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
           +       +  D   +RQ++LN  SNAVKFT   G V +     +           + D 
Sbjct: 547 ESTGLPRWLHGDVTRLRQILLNYASNAVKFTER-GSVVLRARPVAEDDSGVLVRFEVADT 605

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIA  ++ ++  +F Q   +      G GLGL I   +    GG+    S    G   
Sbjct: 606 GIGIAPEQLASLFRAFSQADSSTTRRYGGTGLGLAINMQLAQLMGGETGAESTPGVGSTF 665

Query: 469 IA 470
             
Sbjct: 666 WL 667


>gi|229127392|ref|ZP_04256387.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
 gi|228656074|gb|EEL11917.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
          Length = 351

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 151/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 10  FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 69

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 70  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 125

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 126 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 183 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 240

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 241 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFERFYK 299

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 300 ADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|222053516|ref|YP_002535878.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221562805|gb|ACM18777.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 470

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 12/341 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            + I ++  ++  + +  L ++     +      +       A++ +      LAG    
Sbjct: 139 TMPIMENGRMVQVVQVGMLLDYT--SDILEKLLVIFAVSIPLALIMLWYAGWFLAGRALK 196

Query: 196 ALSFFTYITYHLFKSNV-KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +   T     +   N+   L      D++    +      D    R E       +F  
Sbjct: 197 PVELITTSARKISAENLGHRLEIINPSDEIGRLAKTFNITLD----RLENAFNRTRQFSM 252

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +SHELRTPL  + G +EV         + +  K+ +         + ++I ++L+LSR 
Sbjct: 253 DVSHELRTPLTILRGETEV---GLRWGGDADELKKILRSNMEEINRMSDIIGDLLELSRA 309

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           E G+  L    + L +++++        A+EK I +      SL  V  D   ++Q+ LN
Sbjct: 310 EEGKLVLDPVPVELHELLQDICTKAAPDAREKRIILDLPNAASL-HVAGDPARLQQIFLN 368

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+K+T   G+V + V  +      +S+ D GPGI E ++P +   F +   A    
Sbjct: 369 LIDNAIKYTPCDGKVSLAVD-SEPGWAKVSVTDTGPGIPEADLPHIFEQFYRVDKARNRN 427

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + G GLGL + ++    HGG+  I S    G      LP +
Sbjct: 428 DGGSGLGLSMVRAFSEAHGGRVEIFSLPGSGCTFTVFLPLS 468


>gi|120556502|ref|YP_960853.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326351|gb|ABM20666.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 440

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHE+RTPL  I G+ E +     G      ++  I  +      
Sbjct: 197 RLYQLEQMRRDFVGNVSHEMRTPLTVISGYLETLVDH--GDELPAKWRRAINTMAAQASR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI +++ LSRIE G + + ++   +  ++ +     +  + +K  +I  +I      
Sbjct: 255 MEALITDLILLSRIETGEHTVDDTLTDVDALLNQICHDARALSGDKGHQITVQIS-DHRL 313

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  DE  +R    NL+ NAVK+T  GG + V    T+  G ++S+KD G GI    IP +
Sbjct: 314 LQGDESQLRSAFSNLVFNAVKYTPPGGAITV-AWSTNRDGAHLSVKDTGIGIDPIHIPRL 372

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +      G GLGL I + ++ NH G   IRSK+ EG E I   P  R++  
Sbjct: 373 TERFYRADPSRHKDTGGTGLGLAIVKHVLINHDGNLEIRSKVGEGSEFICHFPRERLVER 432

Query: 481 IPEDNHES 488
           IPE   E 
Sbjct: 433 IPEQVPED 440


>gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
 gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
          Length = 1474

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 146/291 (50%), Gaps = 16/291 (5%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILG 269
            KI+  +    D+    E  K+     +K+AE+    N  K+ FLA+MSHE+RTP++++LG
Sbjct: 1071 KIVKLRGSAQDITTIKENEKA-LIIAKKQAEDAVLANKHKNFFLANMSHEIRTPISSVLG 1129

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            F++++  + +     +    YI  I  + + LLNLI++I+D+S+IE+   ++     ++ 
Sbjct: 1130 FADLLRSDDL---TKDKKLRYIEIIDNNSKQLLNLIDDIIDVSKIESDELKIVYKDCNVA 1186

Query: 330  DIVRECIIMLQL---RAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384
             ++    +  +    + ++ ++++   I  +L   ++  D + + QV+ NL++N++KF+ 
Sbjct: 1187 QLIENLTLTFEQIKVQKEKTHLKLEAIIPSNLRNLNISTDPRRLEQVLSNLINNSIKFSD 1246

Query: 385  IGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             G    ++ G   +       +KD G GIA+ +   +   F Q +    +   G GLGL 
Sbjct: 1247 KG---TISYGFQKNENYLTFFVKDEGIGIAKCKQKEIFERFKQVNYKDSAKYGGTGLGLS 1303

Query: 444  IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
            I ++I+   GG   + SK  +G      +P   + N   +   +  Q K +
Sbjct: 1304 ICKAIVTLLGGDITVESKRYKGTTFKFNIPIKTITNPDIDTAKKINQSKDF 1354


>gi|229124238|ref|ZP_04253430.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
 gi|228659540|gb|EEL15188.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
          Length = 484

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+T     ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYTDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|119471230|ref|ZP_01613733.1| putative two-component sensor histidine kinase and response
           regulator hybrid [Alteromonadales bacterium TW-7]
 gi|119445696|gb|EAW26979.1| putative two-component sensor histidine kinase and response
           regulator hybrid [Alteromonadales bacterium TW-7]
          Length = 654

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 18/304 (5%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            +     +      ++  A + A A+ +         +    I    A KD     +E  
Sbjct: 79  FSGPIIMLTGQSDDELDSAALDAGAVDYLIKGEMSSSRFARAIRYALARKDVEGERVE-- 136

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                  R +AE EN +K RFLA +SHELRTPL++ILG++E++                +
Sbjct: 137 -------RLKAEAENRSKDRFLAHLSHELRTPLSSILGYTELLMQSDFSQQAENE----L 185

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I+R+G+HLL+L+N++LDLS+I A + EL+ S ++L  ++ +   ++++   +K + + 
Sbjct: 186 GVIYRNGKHLLSLLNDVLDLSKIAADKLELTPSEVNLDSMLADVYTLMRVSVLDKGLALK 245

Query: 352 QKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKD 407
            + D +L  V   D   +RQ+++NL++NAVKFT   G + V             + SIKD
Sbjct: 246 FESDQALPLVARLDATRVRQILINLINNAVKFTDK-GEIVVKAWTQHVDGTEMLFFSIKD 304

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GIA  +   +   F Q +     +  G GLGL I   +++   G   + S++ +G  
Sbjct: 305 SGMGIAPEKQQLIFKPFEQIADVESRSVGGAGLGLAICAELLSRMQGNISLHSEIGKGST 364

Query: 468 VIAI 471
               
Sbjct: 365 FTIS 368


>gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 376

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             ++ MSHELRTPLN ILGF++++E   M    N   +E++  I    +HLLNL+NE+LD
Sbjct: 15  ELISRMSHELRTPLNGILGFAQLLE---MDESLNSQQQEFVQAILNGARHLLNLVNEMLD 71

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           ++RIE G  +L+   I L  ++ E + +++  A ++NI+I  +       V+ D   +RQ
Sbjct: 72  IARIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRNIKIVNQTQLDKYYVYTDSTRLRQ 131

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++LNLL NAVK+    G V +T   + G    I IKD+G GI + E   +   F +    
Sbjct: 132 ILLNLLDNAVKYNRDNGTVTLT-SRSEGGNICIHIKDSGIGIPKNEYENIFAPFYRIKG- 189

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   G G+GL + + ++   GG   + S++ EG +    LP 
Sbjct: 190 --TKVDGTGMGLSLVKQLIQLMGGTIGVESEMGEGSDFWFSLPA 231


>gi|294495286|ref|YP_003541779.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666285|gb|ADE36134.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 510

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 7/262 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E + A+    E  K  +E +  ++ FLA++S EL+ PL +I GFS ++     G +
Sbjct: 245 EDITEKKQAEMALVEANKELQELDKMRNEFLANISKELQMPLASIKGFSNLLARGEYGEI 304

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N+   ++ +  I R+   L   +N +L  S   +        A  +  ++ + +  L++ 
Sbjct: 305 NS-KQRDALLTITRNCDRLQKHVNVLLYASEDCSQNVIYYFEATDINSLLNKTLDELKIN 363

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
             + N+ +   ++  +  V ADE  ++ VI  +L NA+KFT   G++ V+   T G+   
Sbjct: 364 FAKYNLTLEINLE-DIPQVNADETQLKNVIFQILDNAIKFTPANGKIKVSTSRT-GKYVE 421

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + I+D+G GIA+ ++  +  SF Q   + +    G G+GL I + I+  H G+ L+ S  
Sbjct: 422 MKIRDSGIGIAKDKVENIFKSFYQVDGSTRRKYGGTGIGLYICKKIVEGHKGKILVESVK 481

Query: 463 REGVEVIAILPNTRVLNFIPED 484
            +G E    LP        P+D
Sbjct: 482 GKGSEFTVQLPIR----TQPDD 499


>gi|326319038|ref|YP_004236710.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375874|gb|ADX48143.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 613

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 159/455 (34%), Gaps = 23/455 (5%)

Query: 26  EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF-----TQNPIFPMWS--LI 78
              S    D  +    ++SL        +  L++  + TW             +W    +
Sbjct: 21  AQASGAGLDLAVRRRLLDSLASRGGTSEIPALVIPGVLTWLYARNGAPATHMLVWWGSFL 80

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138
                   L    +   +      V  W           G CW +  L+         L 
Sbjct: 81  VFVCVLLFLLRRFRRDAALPDHVVVPRWEGAFQAMAAMDGACWAVPILLTQAAPLEFRLL 140

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
            Y     ++A+  + L+    P   F  F  +       A+        ++  +      
Sbjct: 141 TYLVICAVLAVGTTFLAPH--PRVFFPFFAAIYGPTLAAAVWYFPDRWQAMLPLTVLYGG 198

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                 +   +  V+ +  + ++  L              +++AE     K+RFL++ SH
Sbjct: 199 VILRHAWGSRRFVVQQVEMERQRLQLAERY-------LAAKEQAERALEEKNRFLSTASH 251

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           +LR PL+A+    E  +               +  I    + L  L N +LDLSR+E+G 
Sbjct: 252 DLRQPLHAMGLLVESAQQRNADARLVP----VLEGIQDCARSLTFLFNALLDLSRLESGA 307

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
           Y + +  +SL +++ +   +    A+ + + +   +  +    V AD   +RQ++ NL+ 
Sbjct: 308 YAVVQEDVSLAEVLHDVSTVFGPDARHRGLRLEVYLPRNRPAVVRADAALLRQMVFNLVQ 367

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+++T  GG V +           + + D GPG+   +   +   F +G         G
Sbjct: 368 NALRYTRAGG-VLIGARMRR-GVWRVEVWDTGPGVPPEDRHRIYAPFYRGEARWTQEVAG 425

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL +          ++   S+   G     +L
Sbjct: 426 HGLGLSVVARSARLIDAEYGFESRPGRGSCFWLVL 460


>gi|182412087|ref|YP_001817153.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
 gi|177839301|gb|ACB73553.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
          Length = 501

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 97/490 (19%), Positives = 170/490 (34%), Gaps = 30/490 (6%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RS+++    +  L+         +  ++  +D +     V  + R    +    L  A  
Sbjct: 13  RSQRSVNASLEDLLRQARWLRFSDTATEARYDEDR---FVSGMVRERVTMAACALTSAAF 69

Query: 63  GTWFTQNPIFPM-WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL-- 119
           G            +  + + V+A        +  +         +  W  +    + +  
Sbjct: 70  GLLEAHLSHGLYEFPGLMMTVHAVRFYAVIPLWVALCLATFWRGFPRWAGIANAVVTVLS 129

Query: 120 CWT-LLTLVEPGTWTPEYLT--IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
           CW   +   E     PE     +   +TLL+ +    +        V +    +   L  
Sbjct: 130 CWGHSIIAWEVLRALPERNLTNMLTGSTLLVLIVALLMLPMRFRALVGVVALSLGGTLGF 189

Query: 177 QAIMSM----HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
              M      H  +++ A      ++    I     ++  + +  Q E    +AE   A 
Sbjct: 190 SHAMLGGEPVHATNLANASFSLPLVAVLILIGGWFREAADRRMFAQREHARRLAEELAAA 249

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +            N  K+ F+A  +H+LR PL  + GF+E++    +G    E     + 
Sbjct: 250 NAELA------RLNAEKNEFMAIAAHDLRAPLATVRGFAELLRDGRLGE--EEKRVTAVH 301

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +IH     +L L+ + L     E+G   +    I L           +L A  K   I  
Sbjct: 302 EIHAQATRMLGLVTDYLGAHAAESGTVPVRSERIDLAAEACAACERHELTAAGKQQLISG 361

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
               S   V AD   + QV  N +SNA+KF+  G  + + VG   G    +++ D GPGI
Sbjct: 362 PNGASPVWVCADPGLLAQVTDNFISNALKFSPRGASIRLEVGRR-GDVASLAVIDTGPGI 420

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-----KLRE--- 464
              E   +   FG+ S      E   GLGL +A+ +    GGQ    S     +  E   
Sbjct: 421 PADEQAGLFQKFGRTSARPTDGEASHGLGLALAKRLAHAMGGQVGCESPVTGRRPGETER 480

Query: 465 GVEVIAILPN 474
           G      LP 
Sbjct: 481 GARFWIELPA 490


>gi|15598020|ref|NP_251514.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9948909|gb|AAG06212.1|AE004709_5 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 786

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 276 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 335

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 336 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 391

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQ++ NLLSNA+KFT   GRV V V  T+
Sbjct: 392 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQIVSNLLSNALKFT-RLGRVDVRVEATA 449

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 450 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 508

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 509 VESTVGLGSLFSVGLPLAPVSPPL 532


>gi|294505908|ref|YP_003569966.1| sensor/response regulator hybrid [Salinibacter ruber M8]
 gi|294342236|emb|CBH23014.1| sensor/response regulator hybrid [Salinibacter ruber M8]
          Length = 712

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G ++   +    +      + +  L  +        E E A++ ++  R +AEE    KS
Sbjct: 413 GAISGFDTHLIEVLGSYATATLDRLDREKALRAAKEEAERARTEAEVARDQAEEAARLKS 472

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPL +I+GF+E +  E      N     + G I RSG+ LL+ ++ +L+
Sbjct: 473 AFLANMSHEIRTPLTSIIGFAEALGDEVGDGNGN--TGRFAGLIERSGRRLLDTLDGVLN 530

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LS++EAG+  L    + L+   R     L+ +A EK + +  +         AD   ++ 
Sbjct: 531 LSKLEAGQMGLETEPVDLVTKARRAAEELRPQATEKGLGLTVETGRPEVWARADAGSVQI 590

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ NL+SNA+K+T  GG VHV V         + ++D G G+       +   F Q S  
Sbjct: 591 VLQNLVSNAIKYTEEGG-VHVRVFR-ENGWAVLEVEDTGIGMDPALADDLFKPFRQASEG 648

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +  A +G G+GL + Q      GGQ  + ++   G      LP        PE  
Sbjct: 649 LGRAYEGSGVGLAVTQKATEEMGGQVDVETEAGAGSCFTVRLPEA----TSPEAE 699


>gi|118477428|ref|YP_894579.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416653|gb|ABK85072.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 465

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 160 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 219

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 220 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 275

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 276 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 333

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 334 IWQLTPNAEEKKMQFIKTIE--RIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 391

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 392 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGT 446

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 447 INIISKEGIGTTILIKLPL 465


>gi|151220230|ref|YP_001331053.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|212288553|sp|A6QD58|WALK_STAAE RecName: Full=Sensor protein kinase walK
 gi|150373030|dbj|BAF66290.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 608

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|107102374|ref|ZP_01366292.1| hypothetical protein PaerPA_01003436 [Pseudomonas aeruginosa PACS2]
          Length = 772

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 262 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 321

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 322 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 377

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 378 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 435

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 436 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 494

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 495 VESTVGLGSLFSVGLPLAPVSPPL 518


>gi|82702416|ref|YP_411982.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410481|gb|ABB74590.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 570

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 145/272 (53%), Gaps = 4/272 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +   + K   ++     E    I   ++ +    + +  AE+ NLAKS FL+SMSHELR
Sbjct: 280 RLEELVAKRTDELARVNEELRRDITHRKLIEEELIKAKTEAEKANLAKSDFLSSMSHELR 339

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           +PLN +LGF++++  E+  P    T    + +I+ +G +LL LIN+ILDL+ IE+G+  +
Sbjct: 340 SPLNVMLGFAQLM--ESSSPPPTFTQMTMLKEINSAGWYLLELINKILDLAAIESGKLIV 397

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAV 380
           ++  + + +++ E   M++ +AQE+NI +       +   V AD   ++QV++NLLSNA+
Sbjct: 398 AQEPMCIGEVMAESRTMVEPQAQEQNIRLIFPPSSDMNFFVRADRTRVKQVLINLLSNAI 457

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K+   GG V V+   T      IS++D G G+   ++  +   F +       + +G G+
Sbjct: 458 KYNREGGMVEVSCSMTKPGRLRISVRDTGTGLPPEKLTQLFQQFNRLGQ-EAGSVEGTGI 516

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GL + + ++   GG   + S +  G      L
Sbjct: 517 GLVVTKQLVELMGGSIGVESTVDVGSVFWFEL 548


>gi|148260535|ref|YP_001234662.1| integral membrane sensor signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
 gi|326403728|ref|YP_004283810.1| putative two-component sensor histidine kinase [Acidiphilium
           multivorum AIU301]
 gi|146402216|gb|ABQ30743.1| PAS/PAC sensor signal transduction histidine kinase [Acidiphilium
           cryptum JF-5]
 gi|325050590|dbj|BAJ80928.1| putative two-component sensor histidine kinase [Acidiphilium
           multivorum AIU301]
          Length = 459

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 170/454 (37%), Gaps = 49/454 (10%)

Query: 50  PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW 109
           P   L  L++A     +         ++ ++A         ++   +             
Sbjct: 16  PAAVLVALMLAGAIPAWEGAGWLAGCAVWSVAAGVVLARDLRRFSEALAASAPAE----- 70

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT---LLIALSISALSNFMLPYAVFLS 166
                         L L+ PG        I+  A       A++  A  +  L   +  +
Sbjct: 71  --------------LRLITPGLTNLAQRIIHTIAAERQSREAVTADANYSHSLLNRLPDA 116

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK----- 221
            F +      + I+  +   +   G   +AL     +   L +  +     +A       
Sbjct: 117 LFQLDGPPGARRIVWRNPAAVRAYGAEESALLRHPQLRAALAEVELAEQPVRATISLATP 176

Query: 222 --DDLIAELEVAKSLSDET--------RKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              DL A +  +               R R  E N  ++ F+A+ SHELRTPL +++GF 
Sbjct: 177 VPRDLDATVIRSGDTGRAAPIYILLADRTRERELNRMRADFVANASHELRTPLTSLIGFI 236

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E +    +G  + E    ++  +    + +  +I ++L LSRIE   ++     I +  +
Sbjct: 237 ETLRGPALG--DAEALPRFLAIMAEQAERMQRIIADLLSLSRIEMTEHQPPAEQIEIGPV 294

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-----IG 386
           +R+    ++   ++ +  +   I   L ++  D   +  V  NL+ NAVK++A      G
Sbjct: 295 LRQVAGFMEPVLEKASATLTLDIAADLPALPGDSGQLTLVFGNLIDNAVKYSALKHGAAG 354

Query: 387 GRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           G V +T   T        G  +S+ D+GPGIA   +P +   F +       A  G GLG
Sbjct: 355 GTVVMTAHATPDADFNQPGVLVSVVDDGPGIAREHLPRLTERFYRADKGRARAVGGTGLG 414

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L I + ++  H G+ LI S   EG      LP  
Sbjct: 415 LAIVKHVVMRHRGRLLIDSVEGEGTTCRVWLPAA 448


>gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1262

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E+    K  F++ +SHELRTPL ++     ++  + + P ++E   E I         L+
Sbjct: 1029 EKLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQ-ETIEIATEGVNRLV 1087

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
             L+N+ILDL R+ +G+  L +       ++   +  ++  A+E  I I  + +      W
Sbjct: 1088 RLVNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIKSEYEN--FFFW 1145

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTV 420
             D   + Q+++NLL+NA+KF+     + + V   +        SI D G GI   ++ ++
Sbjct: 1146 CDSDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDKLESI 1205

Query: 421  LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
               FGQ   +   A+ G GLGL I +SI+  HGG+  + SKL +G      +P  +
Sbjct: 1206 FDRFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIPLNK 1261


>gi|116051045|ref|YP_790128.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586266|gb|ABJ12281.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 741

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 10/268 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A E N AKS FLA+MSHE+RTP+NA++G  E++          
Sbjct: 224 ITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLA---PE 280

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   + +   L  LI +ILD+++IE+G   L+   + L  +V     M +  A+
Sbjct: 281 QRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLAR 340

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D +    V  D    +QV+ NL+SNA+KFT   G+V + +   S      
Sbjct: 341 QKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGRA 399

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 400 IVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S+  +G  V   L   +    +PE + +
Sbjct: 459 SEPGKGTRVSLDLLLRQCGPKMPESSQD 486


>gi|21107426|gb|AAM36144.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 468

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 130/276 (47%), Gaps = 9/276 (3%)

Query: 213 KILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
           ++ S + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE RTPL 
Sbjct: 192 ELESLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFRTPLG 251

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S   
Sbjct: 252 SILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITISPGW 310

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L+D+      M +      +  +  +  P L  ++ D+K + Q++ N +SNA+KFT  
Sbjct: 311 FDLMDLFAALRGMFRPLTDMGSTTLIFEDPPVLPMLYTDDKKLAQILRNFISNALKFTPQ 370

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G+V V             ++D G GI       +   F Q    ++    G GLGL I 
Sbjct: 371 -GQVRVFAQLEGDSHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLGLSIC 429

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           +      GG+  I S + +G E   +LP T      
Sbjct: 430 KRFAELLGGRVGINSVVGQGSEFYVVLPVTLAAEET 465


>gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1006

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A++ +   R+  E     K+ F++ +SHELRTPL AI G   ++          + + ++
Sbjct: 761 AQAQNISERRAVE---QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYD-HKPQEFHKF 816

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I       + L+ ++N+ILD+ R+ +G  +    A S  +++ + I  LQ  A   +I +
Sbjct: 817 IEIALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITL 876

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                P+   +WA    M Q + NL+ NA+KF+     V ++  +         ++D G 
Sbjct: 877 EIL--PTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSA-YPQDDMVLFQVRDQGR 933

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++ T+ + F Q   +    + G GLGL I QSI+  HGG+  + S+L +G     
Sbjct: 934 GIPPEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYF 993

Query: 471 ILPN 474
            +P 
Sbjct: 994 TIPR 997


>gi|154254036|ref|YP_001414860.1| integral membrane sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157986|gb|ABS65203.1| integral membrane sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 610

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/423 (20%), Positives = 170/423 (40%), Gaps = 14/423 (3%)

Query: 52  LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE-VYVWRIWL 110
           + +       + +   ++    +W +  + +  +   L +  + S          +    
Sbjct: 50  IGVVAATAGVLVSAHPEDRWPLLWCVAMILLSLSLSLLARFYLRSPPADEPSAQRYGAAH 109

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFP 169
                 +G+ W L      G  T ++ T+   +  L   ++ A+S+  +LP + F+S + 
Sbjct: 110 TGLTALVGITWGLGGF---GAATGDFQTLLVYSLALGGTALGAVSSQHVLPRSCFVSLWT 166

Query: 170 VVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            V  L    +      L   + GM+    +  + +   + +     L      D  +AEL
Sbjct: 167 SVPLLGLAHLFHDPAFLGAVIMGMVLLYAAILSILAIRMLRFMQANLRLTRSLDARLAEL 226

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
               +  +  R  A E NL+KSRFLA  SH+LR P++AI  F+  +    +G        
Sbjct: 227 TQMAAELEGARAEAVEANLSKSRFLAHASHDLRQPIHAIGLFAACLRDIDLGAEAA---- 282

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +G +  + + +  L+  +LD+SR++ G        ++L ++++         A   + 
Sbjct: 283 QLVGSVDNAARSVSRLLGSLLDISRLDVGGVVPQPEPVALGEMLQGIARQNADIAAANSC 342

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +     P+   V AD   +  ++ NLLSNA+K+   G R+ V     +G    I + D 
Sbjct: 343 TLRIV--PTALWVEADPALLSAMVQNLLSNALKYAP-GARILVGARR-AGGSIAIEVVDT 398

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGIAE +   +   F +       A +G+GLGL I + +           S    G  +
Sbjct: 399 GPGIAEKDFRRIFDEFYRADRPAVRATEGLGLGLAIVRRLAELMALDVSAASAPGRGTRL 458

Query: 469 IAI 471
              
Sbjct: 459 RIS 461


>gi|294055632|ref|YP_003549290.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614965|gb|ADE55120.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 438

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 2/242 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +   + +  F+A++SHELRTPL  I GF+E +  +    L  E    ++  I  + + 
Sbjct: 186 RLKSLEMVRREFVANVSHELRTPLTIIKGFAETLVEDN-ASLPVEARARFLEKILNNAER 244

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ ++L LSR+E+   ++     SL  ++ + I     R       I  K D  +  
Sbjct: 245 LHVLVEDLLTLSRLESKPDQVDPQLYSLRQLMEDTIENYSSRLNPGVQAIELKYDDRVGD 304

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPT 419
              D   + QV+ NL+ N  ++     ++ ++V +         S++D+GPGI   ++P 
Sbjct: 305 FSFDRFRLNQVVDNLIENTFRYAPEFTQLSLSVDYDEETDFVECSVQDDGPGIPAKDVPH 364

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F +          G GLGL I + I+  HGG     S+L EG ++   LP  R L 
Sbjct: 365 IFERFYRVDKGRSRERGGTGLGLSIMKHIVQLHGGTVWAESELGEGTKICFTLPYRRALQ 424

Query: 480 FI 481
             
Sbjct: 425 ST 426


>gi|229013875|ref|ZP_04171003.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
 gi|228747544|gb|EEL97419.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
          Length = 484

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 RLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE++ ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVYLQLQSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTV-LSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|229169400|ref|ZP_04297110.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
 gi|228614163|gb|EEK71278.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
          Length = 484

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 RLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE++ ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVYLQLQSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTV-LSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|224502418|ref|ZP_03670725.1| hypothetical protein LmonFR_07844 [Listeria monocytogenes FSL
           R2-561]
          Length = 610

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|188992558|ref|YP_001904568.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167734318|emb|CAP52528.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris]
          Length = 292

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 16/287 (5%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-----------RAEEE---NLAKSRFL 253
             + V  +   AE + L  + +  +   DET +           +AE+    +  KSRFL
Sbjct: 3   HANEVPAIDAMAELESLRQQNQALREELDETNQGVLALYAELDQQAEQLRDVSELKSRFL 62

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           + MSHE RTPL +IL  + ++E    GPLN E  K+ +  +  S + L  +++++LDL++
Sbjct: 63  SYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSASTRELSEMVDDLLDLAK 121

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           IEAGR  +S     L+D+      M +         +  +  P L  ++ D+K + Q++ 
Sbjct: 122 IEAGRVTISPGWFDLMDLFAALRGMFRPLTDASRTTLIFEDPPVLPMLYTDDKKLAQILR 181

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           N +SNA+KFT   G V V            S++D G GI       +   F Q    ++ 
Sbjct: 182 NFISNALKFTPQ-GHVRVFAQLQGDTHVRFSVQDTGIGIPAELHDALFEDFVQVDSPLQK 240

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              G GLGL I +      GG   I S + +G E   +LP T     
Sbjct: 241 RLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLPVTLAPQQ 287


>gi|116050828|ref|YP_790349.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586049|gb|ABJ12064.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 786

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 276 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 335

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 336 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 391

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 392 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 449

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 450 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 508

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 509 VESTVGLGSLFSVGLPLAPVSPPL 532


>gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1068

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 24/296 (8%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 307 LRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQKQALLIAQNQLVRN 366

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 367 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVK-YAQAILSSN 425

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  +    +++      +  A++K + +        
Sbjct: 426 NDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRDTFEPLARQKGLALEITAAAGA 485

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D + ++Q++ NLL+NA+KFT   G+V + V  ++      ++ D G GIA  + 
Sbjct: 486 PAQLVVDNQRLQQILKNLLANAIKFT-EHGKVGLLVQASAPGRVRFAVTDTGIGIAREQS 544

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP
Sbjct: 545 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELP 600


>gi|218890978|ref|YP_002439844.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218771203|emb|CAW26968.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 786

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 276 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 335

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 336 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 391

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 392 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 449

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 450 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 508

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 509 VESTVGLGSLFSVGLPLAPVSPPL 532


>gi|228948417|ref|ZP_04110700.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811404|gb|EEM57742.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 484

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV W+     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTV-WSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|224476604|ref|YP_002634210.1| respiratory response protein SrrB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421211|emb|CAL28025.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 584

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  K  F+A++SHELRTP+  + G++E I    +     +  ++ +  +    Q L  
Sbjct: 352 QLDQMKKDFIANVSHELRTPIALLQGYTESIVDGVVSE--PDEIRDSLSIVLDETQRLNR 409

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+NE+L+++R++A    +++    +  ++    +  + +A++  I+I    +      + 
Sbjct: 410 LVNELLNVARMDAEGLSVNKEVQPIDPLLERMQMKYRQQAEDLQIDINLAPNTEGQLWYY 469

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   M QV+ NL+ NA ++T+ G  + ++    S +   + + D G GIA   I  V   
Sbjct: 470 DTDRMEQVLTNLVDNASRYTSPGDAIKISTS-ESDKYDILYVTDTGSGIAPEHIDLVFDR 528

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   + K  ++G GLGL I + I+   GG   ++S+L EG   I  LP 
Sbjct: 529 FYKVDASRKRGKEGTGLGLFICRMIIEAQGGTIDLKSRLGEGTTFIIKLPK 579


>gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 488

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 148/351 (42%), Gaps = 16/351 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
                    +  +    I  +++   + +    +      V + +    I +  +  ++ 
Sbjct: 154 SDKNVIGSVLLHAPITGITGALNKTISILSVSLLIALLIAVGLGIFYSIIFTRPLKTMNR 213

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +                 +    ++ Q E   L   L++  S   E  +   +    +
Sbjct: 214 TALEMA----------RGNYNARTGINRQDEIGQLGDSLDLLASELSEATEEINKLEQVR 263

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F+A++SHE RTPL  I G  E +   T+   + E  K +   +    + L  L++++L
Sbjct: 264 RDFVANVSHEFRTPLTVIRGSLEALSDGTI--EDTEDIKRFYQRMLSETRGLERLVSDLL 321

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           +LSR+++G+  + +  + +  ++ + I  +Q  A +K I+I    D ++  V  D   +R
Sbjct: 322 ELSRLQSGKITIHKEHVHIPSLLSDIIKSMQTIADKKEIQIDFITDDNVPPVLGDYDRLR 381

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+ +  + NA+K++     V VT          I I+D G GIA  E+P V   F +   
Sbjct: 382 QLFVIFIDNAIKYSPDKTIVTVTTHVKDS--LEILIQDQGYGIAVEELPYVWDRFYKTDK 439

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           + KS+  G GLGL IA+ ++  +GG   ++S   +G  +   LP   V   
Sbjct: 440 SRKSS--GTGLGLAIAKHLIKLNGGSVELKSAAGKGTTIEIQLPVQNVDEQ 488


>gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 563

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 10/249 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +   +E + +AE  +  KS++LA MSHE+RTPLNAI GFSE++         +
Sbjct: 322 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 377

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    Y   I  + Q L+ LIN+ILD+S+IEA   +++   + + +++       +LR  
Sbjct: 378 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 437

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +++  +          D   + Q+I NL++NA+K T   G + +             
Sbjct: 438 G-GVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDNQLRFY 495

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G GI + ++  V   F +    I    +G+GLGL I + ++   GG   + S+L  
Sbjct: 496 VRDTGIGIDKDKLKDVFGRFVK----INDYMEGIGLGLAICKGLVVKMGGLIHVTSELGV 551

Query: 465 GVEVIAILP 473
           G E   ILP
Sbjct: 552 GSEFSFILP 560


>gi|149922270|ref|ZP_01910707.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816903|gb|EDM76389.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 590

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 31/405 (7%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           ++V+ ++  +      +  L   +  +    T   +V         L+++     L A  
Sbjct: 108 RRVLVTEEDVTSRRRAQEALSASENQLRTIITGAPIVLFSVDPDGILSLFDG---LGASG 164

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           +      ++  +VF  F  V   L+            ++AG  A   +    +T+ L  S
Sbjct: 165 LGVSPERVVGRSVFEVFAHVPQMLTAVR--------KAMAGETAVTSAPIGRMTWELRCS 216

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                  + E    I     A  +++  R         K+ F++ +SHELRTPL +I G 
Sbjct: 217 PAVAGDERLEGVVGI-----ATDITERARIE-----RLKNEFVSIVSHELRTPLTSIRGS 266

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
             ++E    G L+    K  +     + + L+ L+N+ILDL +IE G+ EL    +  I 
Sbjct: 267 LGLLEGGVAGELDI-RIKGLVRIALSNTERLIRLVNDILDLDKIETGKLELRSEVLDPIR 325

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +  + I  +   A E  + + ++ + S   V  D   + QV++NLLSNA+KF+  G  V 
Sbjct: 326 LTEDAIAEISGYATESGVSLVREFE-SACDVRGDRDRLLQVLINLLSNAIKFSKPGDTVT 384

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V +   S      S+ D GPGIAE ++P +   F Q   +   +  G GLGL I+++I+ 
Sbjct: 385 VEIEEISPGTVRFSVCDEGPGIAEDQMPKLFRKFSQLDESATRSAGGSGLGLAISKAIID 444

Query: 451 NHGGQFLIRSKLREGVEVIA-------ILPNTR-VLNFIPEDNHE 487
            HGG   + S+L  G             LP  R      P D  E
Sbjct: 445 AHGGGIGVESQLGVGSRFHFALGESVNDLPQRRFRAESTPIDTSE 489


>gi|30020096|ref|NP_831727.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29895646|gb|AAP08928.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 348

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 151/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 7   FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 66

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 67  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 122

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 123 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 179

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 180 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 237

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 238 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFERFYK 296

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 297 ADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 343


>gi|186686366|ref|YP_001869562.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468818|gb|ACC84619.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 807

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +++  A+  N AKS FLA+MSHELRTPLN ILG ++++      P   +    ++
Sbjct: 323 QRELKKSKAAADTANHAKSEFLANMSHELRTPLNGILGCAQILLR---SPALPKQELYHV 379

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I + G HLL LIN+ILDLS+IEA + EL    +     ++  + +  +RA++K I   
Sbjct: 380 NIIEQCGSHLLTLINDILDLSKIEAKKLELYPDDVHFPSFLQGIVEICHIRAKQKGILFV 439

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---------GRGQ 401
            K   +L + +  D K +RQV+LNLL NA+KFT   G+V   +                 
Sbjct: 440 YKPGINLPTGIHVDVKRLRQVLLNLLGNAIKFTDE-GQVTFNIEVIDRAPNDVQIIKHRL 498

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             +++D G GI   E+  +   F Q     K   +G GLGL I + ++   G    + S+
Sbjct: 499 RFTVEDTGIGITPVELSQIFLPFEQVGEK-KRQAEGTGLGLAITRQLVQMMGSDIHVHSQ 557

Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486
           + +G   +  L        IPE   
Sbjct: 558 IGQGSSFLFEL-------EIPEATD 575


>gi|218896945|ref|YP_002445356.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218545306|gb|ACK97700.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 357

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 150/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 16  FGAVLALFSFLTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 75

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 76  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 131

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 132 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 188

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 189 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHVTADQE 246

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I D+G GI+E +   +   F +
Sbjct: 247 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRICDSGIGISEEQKQHIFERFYK 305

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 306 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352


>gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 550

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E+    ++ F++ +SHELR+PL +I G   ++  +  G L     +  +   HR+  
Sbjct: 301 ERLEQ-EQLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQL-PPKAEGLLEIAHRNAD 358

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L+ +IN+ILD+ +I +GR +       L ++V E +       Q   ++I      + +
Sbjct: 359 RLVLIINDILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPT 418

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   + QV+ NL+SNA KF+  GG V ++V  T      +S++D G GIA  +   
Sbjct: 419 YIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVDKTPEN-VCVSVRDEGMGIAPEDQHK 477

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F   + + ++ + G GLGL I ++I+   GG     SK   G      LP  +  +
Sbjct: 478 IFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPV-KTRH 536

Query: 480 FIPEDNHE 487
             PE++ E
Sbjct: 537 SGPENDFE 544


>gi|229028449|ref|ZP_04184571.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271]
 gi|228732898|gb|EEL83758.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271]
          Length = 422

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   E    Y+  I     ++ NL+ +
Sbjct: 195 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 251

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 252 LFSLAQMEQHNFSIQVKKVHLHTFLTRIAEKVNAMYKERYITVSFSCPPTLV-VNLDEQR 310

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 311 FEQVIINILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 369

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  H G   + S++  G   I  LP
Sbjct: 370 DKARSRATGGTGLGLSIVKEIVELHSGNVTVTSEVDHGSCFIISLP 415


>gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 477

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 4/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E   + +  F+A++SHELRTPL +I G+ E +   T  P      +E++G I ++   + 
Sbjct: 248 ERAEIMRRDFVANVSHELRTPLTSISGYVETLLDTT--PDLPPHVQEFLGIILKNANRMN 305

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L  ++L L+ +E+G Y+L    I+   ++ + I  L     +    +  + + + + V 
Sbjct: 306 RLTEDLLALANVESGEYQLHRQPIAASALLEDTIEGLAGMLVDSGFLLK-QRETTNTKVL 364

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV  NL+ NA+K+   G  V V             ++D GPGIA+     +  
Sbjct: 365 VDIDAITQVFGNLIENAMKYGRTGQSVTVGA-RDCDGCVEFYVQDYGPGIAQEHQARIFE 423

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +   A      G GLGL IA+ I+  H G   + S+L  G   I  LP 
Sbjct: 424 RFYRVDKARSRESGGTGLGLAIARHIVLAHEGTIHVESELGSGATFIVRLPA 475


>gi|262053232|ref|ZP_06025383.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
 gi|259158871|gb|EEW43964.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
          Length = 588

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 361 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAIVLDESKRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +  +  + +           + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQDDDLGLNMTFNYCKKRVWSY-D 477

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 478 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 536

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +G   I  LP 
Sbjct: 537 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
 gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
          Length = 1321

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 2/243 (0%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K+ F++++SHELRTPL AI G   ++     G L  E     +   H +   L++L+
Sbjct: 937  DKMKAEFISTVSHELRTPLTAISGALGILTAGGAGTL-PEAATRMLQIAHNNALRLIHLV 995

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N++LD+ ++ AG+ +      SL+ IVR+ +      A + ++      D   + V  D 
Sbjct: 996  NDLLDMEKLVAGKMQFEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDDAMVSVDS 1055

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              + QV+ N LSNA KF+   G+V V +         +++ D+G GI E     +   F 
Sbjct: 1056 LRLEQVLANYLSNAAKFSPPNGQVWVNIRRRM-GSVRVTVTDHGRGIPEAFRARIFHKFS 1114

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            Q   +    + G GLGL I + ++   GG+    S   +G      LP       +    
Sbjct: 1115 QADSSDSRQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELPCEDSAQSLEHQG 1174

Query: 486  HES 488
             ES
Sbjct: 1175 AES 1177


>gi|39726389|gb|AAR30137.1| putative histidine kinase HHK2p [Gibberella moniliformis]
          Length = 2072

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 17/256 (6%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E    K RFL++MSHE+RTPL  I G    ++  T+    NE   +Y   I  S   
Sbjct: 1401 KLKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQLDYTNTIQTSANS 1456

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L         I+ +   ++   A  K +E+   ++  +  
Sbjct: 1457 LIMIINDILDLSKVDAGMMKLKYEWFHTRSIIEDVNELVSTMAIAKRLELNYLVEADVPA 1516

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGW-----TSGRGQYISIKDNGPG 411
             V  D+  +RQV+LN+  NA+KFT+ G    R  V V        +      S+ D G G
Sbjct: 1517 WVKGDKVRIRQVLLNVTGNAIKFTSEGEVFSRCRVYVAEGSHVDENEIMLEFSVTDTGRG 1576

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             ++ E   +   F Q   +      G GLGL I++ +   HGG    R+ L +G      
Sbjct: 1577 FSKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGSMTGRATLGKGSTFTFT 1636

Query: 472  ----LPNTRVLNFIPE 483
                LP       +P+
Sbjct: 1637 ARFGLPTADDHPNLPD 1652


>gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1049

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 10/294 (3%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            +++S+  ML      F+     +               +L   +    +     R+ A+
Sbjct: 464 PVELSITPMLLQGEWTFSAFLRDITDRKQMEERTLNLNRELEQRVAQRTTELVAAREAAD 523

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKS FLA+MSHE+RTP+N + G  E++ L  +        +  +  +  S Q LL 
Sbjct: 524 TANRAKSTFLATMSHEIRTPMNGMFGMLELLGLTELDT----DQRATLAIVRESSQSLLC 579

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVW 362
           +I++ILD S+IEAG+  +     S+ D++     M    A  + + +    DP +  ++ 
Sbjct: 580 IIDDILDFSKIEAGKLTVRPEVASIKDVIEHVRNMYAGNASGRGLLLKHGTDPQISPALM 639

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIP 418
            D   + Q++ NL+SNA+KFT+  G + +     +           + D G G++  +  
Sbjct: 640 FDPLRLGQILNNLVSNALKFTSR-GSIEIKAELIARTNGEDQVRFVVTDTGMGVSAEDQQ 698

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   F QG         G GLGL I + +     G   + S+L +G  +I  L
Sbjct: 699 RLFQPFTQGGGDTARWAGGTGLGLTICRRLAGMMNGTVEMVSELGKGTTMILTL 752


>gi|313107966|ref|ZP_07794135.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310880637|gb|EFQ39231.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 772

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 262 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 321

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 322 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 377

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 378 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 435

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 436 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 494

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 495 VESTVGLGSLFSVGLPLAPVSPPL 518


>gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +         A + + AK  FLA+MSHE+RTP+N ++G  E++    + P   
Sbjct: 269 ITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDLDP--- 325

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY      S + +L +IN +LD S+IE+ +  L     ++ + V   +   +  A 
Sbjct: 326 -RQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAA 384

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K + +   + P +   V  D     Q++ NL+ NAVKFT   G + V +G  +     I
Sbjct: 385 RKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQ-GAITVQLGAAAVDDCRI 443

Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +     D G GI+  +  T+   F Q   +      G GLGL I + ++    G   + 
Sbjct: 444 DVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVA 503

Query: 460 SKLREGVEVIAI 471
           S+   G      
Sbjct: 504 SEPGMGSTFSFR 515


>gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
 gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
          Length = 589

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 4/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  F++ +SHELRTPL ++LG+ E++   T      E  + Y+  I R+ +  L 
Sbjct: 356 EAARLKDEFVSLVSHELRTPLTSVLGYLELLLDGT--DELTEEQRSYLTVIERNARRQLR 413

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L  ++++AG + +S   I L D+VR     L   A++  + +   + P+   V A
Sbjct: 414 LVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGVALVTSVAPTP--VVA 471

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+SNAVKFT  GG VH+ V  T   G  + ++D G GIA  E+  + T 
Sbjct: 472 DPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLVRDTGIGIAPDELQRLTTR 531

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F + + A + A  GVGLGL IA++++  HGG+  + S L EG   +  LP   
Sbjct: 532 FFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEGTTFVVTLPAAP 584



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 30  KMDFDREIITLHVESLFRVSPIL-----PLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
                  ++      +   + ++      L V L+A +   F   PI   W++      A
Sbjct: 10  PAGGASRVLRRFASRMGSEAAVVERQLPFLVVFLIALLTLRFPGIPISLPWAVWASGGVA 69

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             ++L  + +                 V      +   LL     GT +     I+    
Sbjct: 70  VLIALLARFVPWAEAPEWTQD------VLPALQIVAIALLRAGTGGTGSMYTTMIF---- 119

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
               L + AL+       + +    V +A+   A +   V   +L  + +  +    ++ 
Sbjct: 120 ----LPVLALAAQRGRRGIAVGTIGVGLAIVVPAALDPDVPFSNLVLLRSLFVGLVAFVI 175

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                   + L  + E   ++ + E    L +  R  A
Sbjct: 176 AVTAHEVTERLRARTEAVAVMRDREQ--ELLERMRADA 211


>gi|322389964|ref|ZP_08063504.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
 gi|321143400|gb|EFX38838.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
          Length = 450

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDD---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSS 360
            ++L LSRI+    +L     +    +   +        Q +   K  E+ ++   +   
Sbjct: 263 TDLLSLSRIDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIW 322

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+L+NA+K++  GG++ V +  T  +   ISI D G GI + ++P +
Sbjct: 323 VEIDTDKMTQVIDNILNNAIKYSPDGGKIKVGMKTTDAQ-LIISISDEGLGIPKKDLPRI 381

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 382 FDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|299821103|ref|ZP_07052991.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299816768|gb|EFI84004.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 610

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 8/243 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N  +  F++++SHELRTPL ++  + E +        + E   +++       + ++
Sbjct: 373 EKVNQERRDFVSNVSHELRTPLTSMNSYLEALRDGAW--EDKEIAPQFLEVTQNETERMI 430

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++AGR  L +S ++  D     I   ++  ++  I   + I      + 
Sbjct: 431 RLVNDLLKLSRMDAGRESLEKSFVNFTDFFNHIIDRFEMM-KKDTIMFIRHIPKLPIIIE 489

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +   S + Q IS+ D G GI + ++  V  
Sbjct: 490 IDEDKIMQVMDNIISNANKYSPDGGRISFYLKKWSDKIQ-ISVSDEGLGIPDEDLDKVFD 548

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++ +HGG          G  +   LP     + +P
Sbjct: 549 RFFRVDKARSREMGGTGLGLAIAKEVIESHGGHIWAERNNGRGTTIHFTLP----YSDLP 604

Query: 483 EDN 485
           ED+
Sbjct: 605 EDD 607


>gi|149915148|ref|ZP_01903676.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
 gi|149810869|gb|EDM70708.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
          Length = 1108

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 152/324 (46%), Gaps = 14/324 (4%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L       A+ ++   V  A +  AI+++    + +   +      F  I      +  
Sbjct: 571 TLVLSGAFGALLVAIRSVSGAQNFDAILTIIFGTVLIGIGIFVW--MFILIGESQQNARA 628

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +           I   +       E +++AE  NLAK+R++  +SHELRTPLNAI GF++
Sbjct: 629 EAKRQTDRLLKEIRAHDRTDRALQEAKEKAEAANLAKTRYMTGLSHELRTPLNAIYGFAQ 688

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +        +    I  I RS +HL  LI  +LD+SRIEAGR +L+   ++L   V
Sbjct: 689 LLEKDPGLAPWRPS----ITSIRRSSEHLAGLIEGLLDISRIEAGRLDLTRDRVNLRMFV 744

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           ++   + Q  A++K I+        L ++   DEK +RQ+I+NLLSNA+++T   G V  
Sbjct: 745 KQVASIFQEEARKKGIDFRVTTHGFLPTLVGTDEKRLRQIIINLLSNAIRYTDS-GVVSF 803

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            + + +     I++ D G GI+   +  +   F +      ++  G GLGL I + ++  
Sbjct: 804 DLTYRNE-VAIITVADTGIGISPDNMTRIWRPFERAGQ---TSGPGSGLGLTITKLLVEI 859

Query: 452 HGGQFLIRSKLREGVEVIAI--LP 473
            GG   + S   +G        LP
Sbjct: 860 LGGDIDVTSAPGQGSTFRVRMMLP 883


>gi|110801437|ref|YP_696917.1| sensor histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168205524|ref|ZP_02631529.1| sensor histidine kinase [Clostridium perfringens E str. JGS1987]
 gi|168210168|ref|ZP_02635793.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626]
 gi|168215868|ref|ZP_02641493.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
 gi|169344258|ref|ZP_02865240.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
 gi|182626280|ref|ZP_02954037.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
 gi|110676084|gb|ABG85071.1| sensor histidine kinase [Clostridium perfringens ATCC 13124]
 gi|169297717|gb|EDS79817.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
 gi|170662930|gb|EDT15613.1| sensor histidine kinase [Clostridium perfringens E str. JGS1987]
 gi|170711739|gb|EDT23921.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626]
 gi|177908459|gb|EDT70997.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
 gi|182382149|gb|EDT79628.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 471

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 151/309 (48%), Gaps = 12/309 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF V + +    +    +L   LA  +   ++    ++  + K N+K+ +     D++  
Sbjct: 165 FFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEK 224

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +++E     E   + K+ F++S+SHELRTPL +I G++  +  +     + ET
Sbjct: 225 LADSLNIMAEE----IENREILKNEFISSVSHELRTPLTSIKGWAITLNNDF---TDRET 277

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K     I +    L N++ E+LD S+  +G+ +L    I+L + +    + +  RA+ +
Sbjct: 278 LKMGFDIIEKEADRLSNMVEELLDFSKFVSGKIKLKYEEINLKEFIEYLRLYMNPRAERE 337

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + E+  K       +  D+  ++QV +N++ NA KFT    ++ +   + +  G YI+I 
Sbjct: 338 HKELILKGITEDFIIVGDKDRLKQVFINIIDNAFKFTHENEKITIEFVY-ADEGIYINII 396

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ E+P V   F +G  +        G+GL I   I+A H G   I S+L +G 
Sbjct: 397 DTGCGISKEELPRVKEKFYKGKNSKSQN----GIGLSICDEIIALHEGTLEIYSELGKGT 452

Query: 467 EVIAILPNT 475
           +V+  LP  
Sbjct: 453 KVVIYLPKK 461


>gi|332532038|ref|ZP_08407922.1| histidine kinase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038665|gb|EGI75108.1| histidine kinase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 655

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 18/286 (6%)

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
           A + A A+ +         +    I    A KD     +E         R +AE EN +K
Sbjct: 97  AALDAGAVDYLIKTEMSSSRFARAIRYALARKDVEGERVE---------RLKAEAENRSK 147

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            RFLA +SHELRTPL++ILG++E++                +G I+R+G+HLL+L+N++L
Sbjct: 148 DRFLAHLSHELRTPLSSILGYTELLMQSDFSQQAENE----LGVIYRNGKHLLSLLNDVL 203

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368
           DLS+I A + EL+ S ++L  ++ +   ++++   +K + +  +    L  V   D   +
Sbjct: 204 DLSKIAADKLELTLSEVNLDSMLADVYTLMRVSVLDKGLTLRFESQQPLPLVARLDATRV 263

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           RQ+++NL++NAVKFT   G + V             + SIKD+G GIA  +   +   F 
Sbjct: 264 RQILINLINNAVKFTDK-GEIVVNAWTQWVDDREMLFFSIKDSGMGIAPEKQELIFKPFE 322

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q +     +  G GLGL I   ++A   G   + S++ +G      
Sbjct: 323 QIADVESRSVGGAGLGLAICAELLARMHGNISLHSEIGKGATFTIS 368


>gi|292670813|ref|ZP_06604239.1| sensor histidine kinase [Selenomonas noxia ATCC 43541]
 gi|292647434|gb|EFF65406.1| sensor histidine kinase [Selenomonas noxia ATCC 43541]
          Length = 419

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    + +F A  SHELRTPL  +L  ++++  +    + +   K+ I D+    + +  
Sbjct: 188 EAYERQRQFAADASHELRTPLAVVLASADLLRSD--TSITSPFLKQVIEDVRDEVKKMTK 245

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L ++R +    ++    + L+   ++ I +++  A++K+I I  +I P  + ++A
Sbjct: 246 LVGDLLTVARTDGSANQIKPVRMDLVAAAQKTIRIMRPFAEKKDIVIE-EILPKQAELYA 304

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+ +RQ+IL L+ NAVK+T   GR+ + +        ++S+ D G GI       +   
Sbjct: 305 DEQKIRQLILILVDNAVKYTPEHGRITLCIDQAEKGYIHLSVADTGIGIEPEHQERIFDR 364

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   A      G GLGL IAQ I+  H G   + S++ +G      L
Sbjct: 365 FYRVDKARSRRMGGNGLGLAIAQEIVEAHDGTISVESEVGKGTTFHVSL 413


>gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1186

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 5/231 (2%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
               ++ F++ +SHELRTPL +I G  +++ +      + E  KE +    ++   L  LI
Sbjct: 957  ERLQNEFISMVSHELRTPLTSIHGSLKLMSMMIGDSNSKE--KELVAIALKNTDRLGRLI 1014

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N++LDL RIE+GR  ++    +L ++++     +   A E N+++    +P   ++  D 
Sbjct: 1015 NDVLDLERIESGRVSMTRQDCNLAELMQHTAQAMAPMALELNVKLVV--EPIDITISLDP 1072

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              + Q + NLLSNA+KF+     V ++           + KD+GPGI   +   +   F 
Sbjct: 1073 DRIIQTLTNLLSNAIKFSPSRANVILSATEREQDVLLCT-KDSGPGIPADKTELIFERFQ 1131

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q          G GLGL I + I+  HGG+  + S+L +G      LP  R
Sbjct: 1132 QVDSRESRRLGGTGLGLAICKQIVLQHGGKIWVESELEKGSAFYFTLPKLR 1182


>gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150]
 gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057]
          Length = 449

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+     L     +    +   +      + + + K  EI +    +   V 
Sbjct: 263 TDLLSLSRIDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N+++NA+K++  GG + V++  T  +   +SI D G GI + ++P +  
Sbjct: 323 IDTDKLTQVIDNIMNNAIKYSPDGGTITVSIKTTDEQ-LILSIADEGLGIPKQDLPKIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   A+ G GLGL IA+ I+  H G    +S+   G     +LP
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
 gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHELRTPL  I  ++E +     G L   T K+++G I      + +++ +
Sbjct: 359 MQREFVANVSHELRTPLTNIRSYAETLSDSA-GELPPATEKKFLGVILNESDRMTHIVQD 417

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L LSR ++G+ EL          V++    + + AQ  + ++  +++P L +V AD + 
Sbjct: 418 LLTLSRFDSGKDELHLVRFPFDVAVQDLYNAVYMEAQRHDHKMKLRLEPDLPAVVADRER 477

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV++N++SN++K+T  GG + V+ G   G   ++ + D+G GI   + P +   F + 
Sbjct: 478 VLQVMMNIVSNSIKYTPNGGHILVSAGR-EGDRVWMQVDDDGIGIPPKDRPRIFERFYRV 536

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A      G GLGL IA+ I+  H G   +  +   G+ +   L
Sbjct: 537 DKARSRQSGGTGLGLSIAKEIVDRHEGVLELVDREGPGLSMRMEL 581


>gi|254241493|ref|ZP_04934815.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192]
 gi|126194871|gb|EAZ58934.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192]
          Length = 786

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 276 AELKAANARLTLSNQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 335

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 336 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 391

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 392 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 449

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 450 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 508

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 509 VESTVGLGSLFSVGLPLAPVSPPL 532


>gi|16760519|ref|NP_456136.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25512282|pir||AD0700 probable two-component sensor kinase ssrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502815|emb|CAD01973.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 920

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKTILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFI 481
                  
Sbjct: 613 QEYQPPQ 619


>gi|218438951|ref|YP_002377280.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171679|gb|ACK70412.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 658

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 12/238 (5%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +        +NE  +E++   +     L  
Sbjct: 415 ELNEAKSQFISNVSHELRTPLFNIKSFIETLTEFGEDLTDNE-RREFLETANHETDRLTR 473

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R      A+ L  ++ + +   QL A++KNIE+ Q+I+P+LSSV  
Sbjct: 474 LVNDVLDLSRLESSRI-YHFDAVDLSQLIEQVLRTYQLNAKDKNIELSQEIEPNLSSVLG 532

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------GQYISIKDNGPGIAEG 415
               + QV+ NL+ N++KFT  GGR+ +                   + + D G GI   
Sbjct: 533 HYDLLLQVMTNLVGNSLKFTEPGGRIVIRAYKVKTHPDYPKKTPQVRVEVSDTGIGIDLE 592

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+   H  +  + S++  G      L
Sbjct: 593 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIEEKHHSKVYLISEVGVGTTFWFEL 649


>gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1072

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
              ++    +   L+  +    H F+    ++     +   +AE E A+    + R  A 
Sbjct: 355 AFTVAHGDEVVAVLTITSAPPLHRFELIEAMVEQVGVQLGRVAERERAQRELADARDVAM 414

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  KS FLA+MSHE+RTPLN ++G ++++    +    +         +  + + LL 
Sbjct: 415 AASRQKSEFLATMSHEIRTPLNGVIGLNDLLLRTPL----DPDQLRLASGVQVASRALLG 470

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-W 362
           +IN+ILD S+IEAG+ EL      +  +  +   +L   A+ K +E+       +  V  
Sbjct: 471 VINDILDFSKIEAGKLELERLDFEVRGVFDQVASLLGEAARAKGLELIVSCHSEVPEVLR 530

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIP 418
            D   + QVI NL SNAVKFT   G V +    + G       ++S+ D G G+   ++ 
Sbjct: 531 GDPTRLAQVITNLGSNAVKFTEE-GEVFIRATASPGPAGRTRLHVSVTDTGVGVPANDVG 589

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +  +F Q   +      G GLGL I++ I+   GG+  +      G      
Sbjct: 590 ELFEAFIQADASTTRRFGGTGLGLAISREIVQALGGEIGMEPNPGGGSVFWFT 642


>gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925724|ref|NP_373257.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281748|ref|NP_644834.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484931|ref|YP_042152.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651128|ref|YP_184931.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82749796|ref|YP_415537.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87161483|ref|YP_492741.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193842|ref|YP_498627.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266466|ref|YP_001245409.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392499|ref|YP_001315174.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156978350|ref|YP_001440609.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508285|ref|YP_001573944.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316857|ref|ZP_04840070.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730419|ref|ZP_04864584.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733820|ref|ZP_04867985.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663953|ref|ZP_05143425.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793557|ref|ZP_05642536.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|258411137|ref|ZP_05681416.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|258420959|ref|ZP_05683893.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|258423219|ref|ZP_05686111.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|258438598|ref|ZP_05689821.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|258443946|ref|ZP_05692284.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|258446238|ref|ZP_05694398.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|258449103|ref|ZP_05697209.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|258451348|ref|ZP_05699379.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|258454419|ref|ZP_05702387.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|262049449|ref|ZP_06022321.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|269201709|ref|YP_003280978.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894298|ref|ZP_06302528.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|282902650|ref|ZP_06310543.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282920738|ref|ZP_06328457.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282921309|ref|ZP_06329027.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282927769|ref|ZP_06335383.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|283767809|ref|ZP_06340724.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023056|ref|ZP_06377454.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus 132]
 gi|295406883|ref|ZP_06816687.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296276711|ref|ZP_06859218.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209433|ref|ZP_06925831.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245918|ref|ZP_06929780.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|300911457|ref|ZP_07128906.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81650258|sp|Q6GD71|WALK_STAAS RecName: Full=Sensor protein kinase walK
 gi|81695623|sp|Q5HJX6|WALK_STAAC RecName: Full=Sensor protein kinase walK
 gi|81704769|sp|Q7A215|WALK_STAAW RecName: Full=Sensor protein kinase walK
 gi|81704904|sp|Q7A305|WALK_STAAM RecName: Full=Sensor protein kinase walK
 gi|81706517|sp|Q7A8E0|WALK_STAAN RecName: Full=Sensor protein kinase walK
 gi|123098092|sp|Q2G2U4|WALK_STAA8 RecName: Full=Sensor protein kinase walK
 gi|123722426|sp|Q2FKN7|WALK_STAA3 RecName: Full=Sensor protein kinase walK
 gi|123740988|sp|Q2YUQ2|WALK_STAAB RecName: Full=Sensor protein kinase walK
 gi|212288550|sp|A7WWQ7|WALK_STAA1 RecName: Full=Sensor protein kinase walK
 gi|212288551|sp|A6TXG9|WALK_STAA2 RecName: Full=Sensor protein kinase walK
 gi|212288552|sp|A5INR0|WALK_STAA9 RecName: Full=Sensor protein kinase walK
 gi|212288554|sp|A8YYU2|WALK_STAAT RecName: Full=Sensor protein kinase walK
 gi|5114231|gb|AAD40238.1|AF136709_2 histidine kinase YycG [Staphylococcus aureus]
 gi|13699936|dbj|BAB41235.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14245786|dbj|BAB56181.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203183|dbj|BAB93884.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243374|emb|CAG41791.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285314|gb|AAW37408.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82655327|emb|CAI79707.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87127457|gb|ABD21971.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201400|gb|ABD29210.1| sensory box histidine kinase VicK, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739535|gb|ABQ47833.1| PAS/PAC sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944951|gb|ABR50887.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156720485|dbj|BAF76902.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367094|gb|ABX28065.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725899|gb|EES94628.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728123|gb|EES96852.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787529|gb|EEV25869.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|257840022|gb|EEV64487.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|257843149|gb|EEV67564.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|257846548|gb|EEV70570.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|257848157|gb|EEV72149.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|257850830|gb|EEV74774.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|257855064|gb|EEV78007.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|257857536|gb|EEV80431.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|257860878|gb|EEV83695.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|257863513|gb|EEV86273.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|259162446|gb|EEW47016.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|262073999|gb|ACY09972.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282315724|gb|EFB46108.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282590529|gb|EFB95607.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|282594146|gb|EFB99134.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282597109|gb|EFC02068.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763343|gb|EFC03473.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|283461688|gb|EFC08772.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469248|emb|CAQ48459.1| sensor protein YycG [Staphylococcus aureus subsp. aureus ST398]
 gi|285815746|gb|ADC36233.1| Two-component sensor kinase [Staphylococcus aureus 04-02981]
 gi|294968348|gb|EFG44373.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296885894|gb|EFH24829.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177283|gb|EFH36536.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|298693341|gb|ADI96563.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300887636|gb|EFK82832.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331791|gb|ADL21984.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312828582|emb|CBX33424.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129562|gb|EFT85554.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197937|gb|EFU28270.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141437|gb|EFW33280.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144419|gb|EFW36184.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323440406|gb|EGA98119.1| two-component sensor histidine kinase [Staphylococcus aureus O11]
 gi|323443114|gb|EGB00733.1| two-component sensor histidine kinase [Staphylococcus aureus O46]
 gi|329731734|gb|EGG68094.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732539|gb|EGG68889.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21193]
          Length = 608

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|109898566|ref|YP_661821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700847|gb|ABG40767.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1143

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+GFS+++  + +        K+++  I++S + LL+L+N+ILD +++
Sbjct: 576 NMSHEIRTPMNAIIGFSDILLDDAI----EPDQKKHLTTINKSAKSLLHLLNDILDSAKL 631

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           + G+++L     SLI+ V   +  L L A  KN+ +   IDP++          +RQV+ 
Sbjct: 632 DKGKFDLEMRDFSLIEEVDSVVSTLWLGASNKNLYLNVNIDPAVENQFHGAPDRIRQVLT 691

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           N++ NA+KFT  GG + + +G         S+ D G G+   ++  V  +FGQ   ++  
Sbjct: 692 NIVGNAIKFTLEGG-IDINIGVKPSGCIDFSVSDTGIGMTPEQLALVFDAFGQADASMSR 750

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              G GLG  I++ ++   GG+    S+  +G      LP        P  + ES  
Sbjct: 751 RFGGTGLGTTISKQLVELMGGKISATSEFGKGSCFSFSLPLA------PPKSDESMD 801


>gi|312959787|ref|ZP_07774303.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311285953|gb|EFQ64518.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1215

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 139/279 (49%), Gaps = 19/279 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           ++RA+E N AKS FLA+MSHE+RTP NA++G  E+ ++    G L+
Sbjct: 698 ISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPKNAVIGMLELTLKRADQGHLD 757

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  I   + S + LL LI +ILD++RIE+GR  L+   ++L +++   + +    A
Sbjct: 758 RPA----IEVAYNSAKDLLELIGDILDIARIESGRLSLAPERVNLREVIASVVRVFDGLA 813

Query: 344 QEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           ++K + +  +  P L  + V  D    +QV+ NL+SNA+KFT   G+V + V        
Sbjct: 814 RQKTLSLLLEFKPDLDDTEVLIDPLRFKQVLSNLVSNAIKFTER-GQVKIKVEVLPTDLP 872

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 + ++D G GI+  +   +   F Q   + + A  G GLGL I +S+ A  GGQ 
Sbjct: 873 QQIEMKLVVEDTGIGISREDQMRLFEPFAQADNSGQLARSGAGLGLVICRSLCAMMGGQL 932

Query: 457 LIRSKLREGVEVIAIL------PNTRVLNFIPEDNHEST 489
            + S    G +V   L      P   V  F PE    +T
Sbjct: 933 SLSSVPMVGTQVHVSLKMIRLQPALAVDEFTPEVPAAAT 971


>gi|282918087|ref|ZP_06325837.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
 gi|282318372|gb|EFB48732.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
          Length = 608

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|255034653|ref|YP_003085274.1| ATP-binding region ATPase domain-containing protein [Dyadobacter
            fermentans DSM 18053]
 gi|254947409|gb|ACT92109.1| ATP-binding region ATPase domain protein [Dyadobacter fermentans DSM
            18053]
          Length = 1871

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 137/252 (54%), Gaps = 10/252 (3%)

Query: 226  AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            AE++V K   +  ++  E+++  K +F A+MSHE+RTP+ AILG SE+I    +    NE
Sbjct: 1465 AEIQVQKEEIERQKQLVEQKSRFKEQFFANMSHEIRTPMTAILGMSELIFDTPL----NE 1520

Query: 286  TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
               EY   I  S ++LL +IN++LD S+IEAG++        + D +     +L++ A+E
Sbjct: 1521 KQLEYARGIRYSSENLLAIINDVLDYSKIEAGKFSFINKPFQVGDRMERLGYILRVIAEE 1580

Query: 346  KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQ 401
            K +E+   +D  +   V  D   + Q++LNL  NAVKFT   G V + V      +G+ Q
Sbjct: 1581 KGLELRITVDSDVSPQVIGDPIRLHQILLNLAGNAVKFT-ENGSVSIHVAVLSRDAGQEQ 1639

Query: 402  Y-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               S+ D G GIAE ++  +  +F +      S + G GLGL IA+ ++   GG+  + S
Sbjct: 1640 LQFSVADTGIGIAEDKLEYIFETFTRIDDDSNSRQSGTGLGLFIARKLVEEQGGRMQVTS 1699

Query: 461  KLREGVEVIAIL 472
            ++  G E    L
Sbjct: 1700 RVGHGTEFRFDL 1711


>gi|71909180|ref|YP_286767.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848801|gb|AAZ48297.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 430

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 150/416 (36%), Gaps = 21/416 (5%)

Query: 70  PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIG-LCWTLLT--L 126
             +  W++  L +    +   +     D        W    +V     G   W  +   L
Sbjct: 27  AHWAGWTVFCLGLALQMVFHFRNFARLD-------RWSHNPVVDASLEGEGAWDGIFGRL 79

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
                   E +        ++  +  AL++ ++   +            TQ  + +    
Sbjct: 80  YRHEKDLREQIAQRDHEIAMLIAAGQALTDGVVLLDLHDQIIFCNTTAETQLGLVIRTDR 139

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD----DLIAELEVAKSLSDETRKRA 242
                 +     F  Y+    F   + + + + E       +I      + +  +   + 
Sbjct: 140 GQSVANIVRQPEFVAYLEEGDFSRPLTMRTERREDRVFSIHIIPYAGNRRLMQIKDVTQT 199

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F+A++SHELRTPL  + GF E +E      ++ E    YI  +    + + 
Sbjct: 200 DRLDRMRRDFVANVSHELRTPLTVLAGFLETLEE---FDVDREERNRYINMMSEQSKRMQ 256

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +++ ++L LS IE+         + +++++ +     +  A                 + 
Sbjct: 257 SIVQDLLTLSSIES-APPPENDPVDMVNLLDKLRRDAE--ALSAGRHTIIVETDGQGDLR 313

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             E  +     NL++NAV++T  GG + ++   T  +G   +++D G GI    IP +  
Sbjct: 314 GSEPELISAFGNLVANAVRYTPAGGTIRISWHATP-QGAEFAVQDTGIGIDPKHIPRLTE 372

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            F +          G GLGL I +  +  H  Q  ++S    G    A  P +RV 
Sbjct: 373 RFYRVDRGRSRDAGGTGLGLAIVKHSLNRHQAQLEVKSTPGTGSRFAAKFPASRVA 428


>gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115]
 gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160]
          Length = 448

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+     L     +    +   +      + + + K  EI +    +   V 
Sbjct: 263 TDLLSLSRIDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N+++NA+K++  GG + V++  T  +   +SI D G GI + ++P +  
Sbjct: 323 IDTDKLTQVIDNIMNNAIKYSPDGGTITVSIKTTDEQ-LILSIADEGLGIPKQDLPKIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   A+ G GLGL IA+ I+  H G    +S+   G     +LP
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|119493256|ref|ZP_01624096.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452729|gb|EAW33907.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 491

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 15/317 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQA-IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + +  ++  S  P+ + ++    I+S   +  SL  +   +    T     L    +K+ 
Sbjct: 186 YTIFLSIVYSLIPLTIFVTVVLVIISAWYIHKSLEPLHQMSQLTETISADDLSDYRLKLE 245

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              +E   L         + D    R  E    + +F++++SHELRTPL  + G+ +   
Sbjct: 246 QAPSEVSMLANTC---NKMLD----RLSESWEQQRQFVSNVSHELRTPLTIVQGYLQSTL 298

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
               G       +E +       +  + L+ ++L+L+R + G          +  ++ E 
Sbjct: 299 RR--GNNLTPPQREGLEVAANEAERTIRLLQDLLELARADHGNLHFQIEPFEVNSLLSEV 356

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
             M Q  +Q     +  +       V AD   ++QV+LNL+ NA+K++     + + V  
Sbjct: 357 REMAQQFSQG---RVHLEKIQGTIQVQADRNRLKQVLLNLIDNAIKYSEPEQPITLKVKQ 413

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
           T  +  Y+S+ D G GI       +   F +   A   A  G GLGL I ++I+   GG+
Sbjct: 414 T-DKKVYLSVCDQGQGIPLQHQSRIFERFYRVDEARTRA-GGTGLGLSIVKTIVEGMGGR 471

Query: 456 FLIRSKLREGVEVIAIL 472
             + SK  EG     IL
Sbjct: 472 VTLLSKPGEGSIFTVIL 488


>gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 854

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 134/331 (40%), Gaps = 7/331 (2%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
              LI   IS      L      +  P    L       +  L + L    A AL   + 
Sbjct: 511 MLALIDTVISTGQPIWLCRQ--HAVAPEAALLPLHGFCDLVALPLILHATNAGALVIGSR 568

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
              H+   ++ +L   A++  L       + ++ E  +   + N  KS FLA +SH+LR+
Sbjct: 569 AHRHISGEDLTLLLTIAQQLGLTLSNARLRQVASE-NEALRQANHLKSTFLAGVSHDLRS 627

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL AI    E +       ++   ++  + +I R    L   ++++LDLSRIEAG   L 
Sbjct: 628 PLTAIRASVEDLLERQHH-VSPGEHRALLSNIARETARLSRFVDQLLDLSRIEAGTLPLD 686

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              +    +V++ +     +     +E+     P+L  ++ D   + QV+ NLL NA K+
Sbjct: 687 REWVEFNALVQDVVTSFHQQYPTCRVEVCV--SPTLPLLYIDPSLITQVLWNLLENAQKY 744

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
               G + +    T      +S+ D GPGI   E   +   F +     +S   G GLGL
Sbjct: 745 GPSEGPITLEAFCTHTD-LVLSVGDRGPGIPASERHRIFDRFYRLERDRRSHRSGSGLGL 803

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            I   I+  H G   +  +   G      LP
Sbjct: 804 AICHGIVTAHQGSIWVDERPGGGSVFRITLP 834


>gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
 gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
          Length = 448

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G ++     E++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDD---GAISEPVAPEFVKVSLTETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+    +L     +    +   +      + +A EK  +I +    S   V 
Sbjct: 263 TDLLSLSRIDNETSQLDVELTNFTAFITFILNRFDKMKSQAGEKKYDIVRDYPISPVWVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   M QV+ N+L+NA+K++  GG + V +  T  +   ISI D G GI + ++P +  
Sbjct: 323 IDTDKMTQVLDNILNNAIKYSPDGGEIRVGMKTTDAQ-LIISISDEGLGIPKKDLPRIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 634

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 4/234 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  F++ +SHELRTPL +I G   ++    MGP+     +  +    R+ + L  
Sbjct: 396 EVERLKDEFISVVSHELRTPLTSIKGSLSLLTNGVMGPV-PAAQQPLLDMARRNAERLGE 454

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVW 362
           L+++ILDL R+EAGR  L        ++  + +  LQ  A    +E+  K      + V 
Sbjct: 455 LVDDILDLDRLEAGRMPLRPVETDADELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVR 514

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   M QV+ NL+ NA+KF++ G  V V+V   +G    ++++D GPGI E +   V  
Sbjct: 515 VDPHRMNQVLTNLVGNAIKFSSPGCPVTVSVSR-AGDEVCLAVRDRGPGIPEDQHAAVFE 573

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F Q      +   G GLGLPIA+ I+   GG+  + S+  +G     +LP  R
Sbjct: 574 RFRQVHEPGGART-GTGLGLPIARGIVDRSGGRIELTSEPGKGSTFTVVLPAAR 626


>gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 475

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 12/240 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F++++SHELRTPL ++  + E +E   +   + ET   +IG        ++
Sbjct: 222 DKAERERRLFVSNVSHELRTPLTSVKAYLEALEDGAID--DKETASSFIGVSLTETNRMI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDI-------VRECIIMLQLRAQEKNIEIFQKID 355
            +I+++L LSR++  R  L++  I+LI         + + +          N  + +K  
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                V  D   + QVI N++ NA+K++  GG + +++  T  R   ISIKD G GI + 
Sbjct: 340 DKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISIE-TRERDVLISIKDEGMGIPKS 398

Query: 416 EIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
           ++  +   F +    +  S   G GLGL I   I+  HGG     S+   +G      LP
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 468

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 10/274 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L + N  +          I   +  +    E+R  AE    AKS FLA+MSHE+RTP
Sbjct: 191 SEKLLEMNRTLEGTNNMLRQEIEARKKVEQELIESRDAAEAATKAKSGFLANMSHEIRTP 250

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I G  +++E  ++    +E  +E +     SG+ +L ++++IL+ + ++     L  
Sbjct: 251 LNGIFGMLQLMEDTSL----DEEQQELLQTAKASGRGILTILSDILEFAGLDQVEPRLEN 306

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382
               L  +V++ I  L+  A++K + I   I   L   V  D+  +RQ++ N+LSNAVKF
Sbjct: 307 RPFDLRSVVQQTIQSLEASARQKGLGIKLSIAADLPGEVCGDQARVRQILFNMLSNAVKF 366

Query: 383 TAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           T   G +H+ V     +        ++ D+GPGI++  I  V   F Q   +      G+
Sbjct: 367 T-QDGEIHLDVSLLRSYEDSILAGFALSDSGPGISDDLIFQVFQPFSQADNSFTRRHGGL 425

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLGL IA++++   GG   + ++   G      L
Sbjct: 426 GLGLSIARNLVKLMGGTIALDTEEGRGSTFYFTL 459


>gi|205352892|ref|YP_002226693.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272673|emb|CAR37583.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|309243420|gb|ADO51996.1| SsrA [Salmonella enterica subsp. enterica serovar Gallinarum]
          Length = 920

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL   G      L I          ++  +++            P+   + 
Sbjct: 269 LHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWHFVD 328

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                +   L   L       L         L  +       Q + D+L  ++       
Sbjct: 329 VINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDT------LQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE  N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD S IE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFIP 482
                  P
Sbjct: 613 QEYQPPQP 620


>gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23]
          Length = 2075

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 22/263 (8%)

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
              E + +  E   +K RFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I
Sbjct: 1401 LLEAKLK--EAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTI 1454

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              S   L+ +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   +
Sbjct: 1455 QTSANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLV 1514

Query: 355  DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQY---------I 403
            +  +   V  D+  +RQV+LN++ NA+KFTA  G V      +T                
Sbjct: 1515 EADVPAWVKGDKVRIRQVLLNVIGNAIKFTAE-GEVFSRCRVYTEEDPAVCNENEIMLQF 1573

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +I D G G  + E   +   F Q   +      G GLGL I++ ++  HGG+    +   
Sbjct: 1574 AITDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPG 1633

Query: 464  EGVEVI----AILPNTRVLNFIP 482
            +G          LP+      IP
Sbjct: 1634 KGSTFTFTARFTLPSPEDHPNIP 1656


>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
 gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
          Length = 951

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 449 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDAN----R 504

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++     +  +++   +        +K + 
Sbjct: 505 LVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLPLVVKKRLV 564

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP++   +  D   ++QV+ NLLSNA+KFT   G +   V           ++D 
Sbjct: 565 LYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDT-GCIVFQVACCDDGYLVFKMRDT 623

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI    +  +   F Q    ++   QG GLGL I + +++   G   I S+   G E 
Sbjct: 624 GVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEF 683

Query: 469 IAILPNTRV 477
              +P  R 
Sbjct: 684 GIRIPLYRA 692


>gi|254414687|ref|ZP_05028452.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178535|gb|EDX73534.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 637

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 12/239 (5%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L+    +E++   +R    L  
Sbjct: 371 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-HEYGEDLSEVERQEFLETANRETDRLTR 429

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E          + +   V + +   QL A++K IE+ Q+I P L  V  
Sbjct: 430 LVNDVLDLSRLETSCRIYHFEPVDIAGPVEQTLRTYQLNARDKGIELVQEISPKLPPVLG 489

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIA 413
               + QV  NL+ NA+KFT  GGRV +                     + I D G GI 
Sbjct: 490 HYDLLLQVFDNLVGNALKFTESGGRVVIRAYPLEANPNPNHPDEIPQVRVEISDTGIGID 549

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +   +   F +         +G GLGL I ++I+  H  +  + S++  G      L
Sbjct: 550 WEDQENIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVEKHHSRVYLVSEVGIGTTFWFNL 607


>gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619]
 gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619]
          Length = 785

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 130/286 (45%), Gaps = 6/286 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E       L  +     + R+RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTEELKASNGRLSQSNQELVQARQRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALALDSPL----ESEQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A +             SSV  D   +RQV+ NLLSNA+K
Sbjct: 375 ERIPFDLGAMVEDTANLLSQNAAQNVELTCLIASDFPSSVLGDPTRVRQVVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    + ++D G GIAE     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVCLTTIVGG-VRLEVRDTGIGIAEDAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           L + +++     G   IRS+   G    A LP T     I     E
Sbjct: 493 LALTRNLCKAMQGHLHIRSEPGLGSCFSAELPLTTHTEAIAPAPLE 538


>gi|160880969|ref|YP_001559937.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
 gi|160429635|gb|ABX43198.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
          Length = 860

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/248 (33%), Positives = 136/248 (54%), Gaps = 12/248 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             E R++AE+ N AKS FLA MSHE+RTPLNAI+G ++++    +    +      I +I
Sbjct: 333 LIEMREQAEKANSAKSIFLAHMSHEIRTPLNAIIGLTDIL----LHKDTDFELHNDILNI 388

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +G  LL+LIN++LDL++IE+G+  L +    L  +V E I ++ ++   K + +   I
Sbjct: 389 KHAGGTLLSLINDVLDLTKIESGKLTLVDEPYKLTSVVHEVINIIGVKLMSKPVSLQVSI 448

Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKD 407
              +    + DE  +RQV++NL++NAVKFT   G + + V  +S             ++D
Sbjct: 449 SDQIPKYFYGDELRLRQVLINLMNNAVKFTER-GTISLQVELSSFDLDTQTAQLIFHVRD 507

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GIA+ +   +  SF QGS+      +G GLGL I + I+ + GG   ++S+L  G +
Sbjct: 508 TGLGIAKDDQKRIFHSFEQGSVGSDVLVEGSGLGLTICKRIIESAGGAIKVKSELGVGSD 567

Query: 468 VIAILPNT 475
               LP  
Sbjct: 568 FSFTLPQK 575


>gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 772

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +    +         A + + AK  FLA+MSHE+RTP+N ++G  E++    + P   
Sbjct: 269 ITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDLDP--- 325

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY      S + +L +IN +LD S+IE+ +  L     ++ + V   +   +  A 
Sbjct: 326 -RQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAA 384

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K + +   + P +   V  D     Q++ NL+ NAVKFT   G + V +G  +     I
Sbjct: 385 RKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQ-GAITVQLGAAAVDDCRI 443

Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
            +     D G GI+  +  T+   F Q   +      G GLGL I + ++    G   + 
Sbjct: 444 DVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVA 503

Query: 460 SKLREGVEVIAI 471
           S+   G      
Sbjct: 504 SEPGMGSTFSFR 515


>gi|163939802|ref|YP_001644686.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861999|gb|ABY43058.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 357

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 148/344 (43%), Gaps = 18/344 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATA 196
            +   A L I  SI+   +  +  A  ++  P +   +S        VL  +L G+L   
Sbjct: 19  IVALFAFLTIIWSIAFFVSSSVMKAFEINVSPFITFLISDMVGFVFIVLIWTLIGILMRP 78

Query: 197 --LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEENLAK 249
              +    I   + K      S +   ++     +   ++    ++DE           +
Sbjct: 79  KREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----AMEKMR 134

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++++SHE+++PL +I GF+  ++ + +     E  K Y+  I      L  L   +L
Sbjct: 135 QEFVSNVSHEIQSPLTSIKGFARALQDDNL---PVEKRKHYLTIIETETTRLSKLSQNLL 191

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L+ +E+  Y    +   L   +++ ++  +    EK +E+   +D     V AD++ M 
Sbjct: 192 KLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDK--VCVTADKESMS 249

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV +NL+ N++KFT  GG + + +         +SI D G GI+E +   +   F +   
Sbjct: 250 QVWINLIHNSIKFTPNGGMITIHLKEHKE-FLEVSIHDTGIGISEEQKQHIFERFYKADS 308

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   A  G GLGL I + ++  H G+  + S    G E I  +P
Sbjct: 309 SRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 352


>gi|329725822|gb|EGG62301.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21172]
          Length = 608

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|281417241|ref|ZP_06248261.1| histidine kinase [Clostridium thermocellum JW20]
 gi|281408643|gb|EFB38901.1| histidine kinase [Clostridium thermocellum JW20]
          Length = 501

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 10/275 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           ++  +   +  S  KI+       D+  E+E  K + +  R         K  FL  ++H
Sbjct: 191 YYKLMHRPILNSRNKIVGFLIIPIDITQEIEQKKYIENLAR--------FKDEFLYGITH 242

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E +TPL  I    + IE      L +   K+Y+  I ++    + L+N +LD++RIEAG 
Sbjct: 243 EFKTPLVVISSALQAIEALCRDELTD-RVKKYLNRIKQNTFRQIRLVNNLLDIARIEAGH 301

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            ++ +  + ++ + R     + + A  K +++    +     +  DE+   +++LNLLSN
Sbjct: 302 IKIFKRNLDIVALTRLITESVSMFADLKGVQLLFYSNIDKKIIAIDEEKYERIMLNLLSN 361

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT     V+V V         I +KD+G GI + +I T+   FGQ   ++    +G 
Sbjct: 362 AIKFTPKDRSVYVEVSA-KEGCVEIKVKDSGIGIPKDKIKTIFERFGQVDSSLSRNAEGT 420

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G+GL + +  +   GG+  + S+   G      LP
Sbjct: 421 GIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 455


>gi|265765924|ref|ZP_06093965.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263253592|gb|EEZ25057.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 756

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E RK AE+  L K  FLA++SHE+RTPLNAI+GFS ++       +  
Sbjct: 508 IEDYKKREQELIEARKMAEKAEL-KESFLANISHEIRTPLNAIVGFSTLLASPDDTDITP 566

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++YI  I+R+ + LL LIN+IL+LSRIE+G          L  ++R+     ++   
Sbjct: 567 EEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALIRDTYQTHKILIP 626

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + ++ +  L  V  D+  + QVI N L+NA KFT   G + +   +        I
Sbjct: 627 GQLHFLLEEGEKGLI-VHVDKNRLVQVITNFLNNASKFTRE-GSIKLGWSYMPQTEEVEI 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + E   +   F +         QG GLGL I + I+    G+  +RS+  
Sbjct: 685 YVEDTGIGIPQSEQKMIFGRFYK----QNEFAQGTGLGLSICKLIIEKLQGRLSLRSEAG 740

Query: 464 EGVEVIAIL 472
            G       
Sbjct: 741 TGSHFSIFF 749


>gi|260776063|ref|ZP_05884958.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607286|gb|EEX33551.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 563

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E R RAEE   A   F+A ++HELRTPLN +LG +E++   ++    +E  +  + ++ 
Sbjct: 192 QEARARAEESERATKEFVAMINHELRTPLNGLLGSAELLADTSL----DEEQRTLLTNLS 247

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +G  L ++IN+ILD S+I AG  EL  S  +  ++      +   +AQEK I+      
Sbjct: 248 HTGDFLRHIINDILDFSKISAGMMELIPSTFAWKELTNMLQGVFANKAQEKGIQFSIHSA 307

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           P + + +  D   + Q+++NL+ NA+KFT+  G V V V W      +IS+KD G GI E
Sbjct: 308 PEVPNFLIGDFDRICQILINLVGNAIKFTSA-GSVQVEVFWQENN-LHISVKDTGIGIPE 365

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G    +   F Q     K   +G GLGL I ++++    G+    S+   G +    +P 
Sbjct: 366 GAKAILFDPFVQADRTAKRNFEGTGLGLAICKNLIDLMKGEISFTSQTGVGTQFKLSIPL 425

Query: 475 TRVLNFIPEDNHES 488
                    +  +S
Sbjct: 426 KVATQESKIEKTDS 439


>gi|254445328|ref|ZP_05058804.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259636|gb|EDY83944.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 979

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 11/249 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +++     ++RAE  N AKS FLA +SHE+RTPL ++LG+S++++   +    NE  + 
Sbjct: 447 ESEADLILAKERAEAANQAKSEFLAVISHEIRTPLQSVLGYSDLLKSTPL----NEKQRS 502

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I   G+ LL ++ +ILD S +    +EL    + L  ++ E    ++  A  K ++
Sbjct: 503 CLDTIQSEGKILLRIVQDILDFSNLRKANFELEYGPVRLRRLIEETFRTIKPMADRKGLK 562

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYI 403
              +I   +   V +D   +RQV+LNL  N+VK+T   G V +   +  G          
Sbjct: 563 ASLEIAAKVPELVQSDGVRLRQVLLNLFGNSVKYTEE-GEVLLKAYFEKGNAGEELPLKF 621

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI E ++  +   F Q   + K   +G GLGL I   I+   GG+  + S++ 
Sbjct: 622 EILDTGVGIKEADLGRLFEPFIQLEHSSKFPREGAGLGLAIVNRIVELMGGRIDVESEVG 681

Query: 464 EGVEVIAIL 472
           +G    A  
Sbjct: 682 KGSRFTASF 690


>gi|53714612|ref|YP_100604.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52217477|dbj|BAD50070.1| probable two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 756

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E RK AE+  L K  FLA++SHE+RTPLNAI+GFS ++       +  
Sbjct: 508 IEDYKKREQELIEARKMAEKAEL-KESFLANISHEIRTPLNAIVGFSTLLASPDDTDITP 566

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++YI  I+R+ + LL LIN+IL+LSRIE+G          L  ++R+     ++   
Sbjct: 567 EEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALIRDTYQTHKILIP 626

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + ++ +  L  V  D+  + QVI N L+NA KFT   G + +   +        I
Sbjct: 627 GQLHFLLEEGEKGLI-VHVDKNRLVQVITNFLNNASKFTRE-GSIKLGWSYMPQTEEVEI 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + E   +   F +         QG GLGL I + I+    G+  +RS+  
Sbjct: 685 YVEDTGIGIPQSEQKMIFGRFYK----QNEFAQGTGLGLSICKLIIEKLQGRLSLRSEAG 740

Query: 464 EGVEVIAIL 472
            G       
Sbjct: 741 TGSHFSIFF 749


>gi|319902902|ref|YP_004162630.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417933|gb|ADV45044.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 735

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 134/277 (48%), Gaps = 8/277 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F    T    KS V++   +        E E A+  ++  R+ AE  N  KS FL +MSH
Sbjct: 458 FIFVYTLQRRKSIVRLQKERNIALRARNESEAARKEAEHAREVAEYANRQKSIFLQNMSH 517

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLNAI+GFS+V+  E    L  E   +Y+  IH + + L  L+N++LDLS++E+G 
Sbjct: 518 EIRTPLNAIVGFSDVVNSEEDLGLTVEERADYLSLIHTNTELLTTLVNDVLDLSKLESGS 577

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLL 376
           Y L+ +   + D+    +  +  R  +  +++        S +    D   ++QVI N L
Sbjct: 578 YALALAPTCISDLCHATLRSIASRVPD-GVQLKLDEPEDASFISFLTDAVRLQQVITNFL 636

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NA K+T   G + +        G   S+ D G GI+E +   V   F +      + +Q
Sbjct: 637 TNACKYTDR-GSITLKYRIQEDGGIVFSVTDTGCGISEDKAEIVFGRFEKLD----TFKQ 691

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G GLGL I + I    GG+  + +    G   + + P
Sbjct: 692 GTGLGLSICRHIAELVGGRVYLDTTYTGGARFVFVHP 728


>gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem]
 gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 829

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 6/261 (2%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L+ +    +   EL    +      ++ +E +  KS F+ASMSHELRTPLN+++G+S +I
Sbjct: 561 LNLETRVAERTQELNEKSAQLAAANEKLKEVDRLKSMFIASMSHELRTPLNSVIGYSSII 620

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
             E +GPL   T KE +  + R+G+HLL+LIN+++D+S+IEAG+ E+      L D+V+E
Sbjct: 621 LNEWLGPLQ-PTQKENLAIVLRAGKHLLSLINDVIDVSKIEAGQIEVHNEEFDLFDLVQE 679

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               L+   + K +            + AD + + Q +LNLLSNA+K+T   G + + V 
Sbjct: 680 AAQQLEPEIRGKGLAFPVTNI--HLQLLADRRRLLQAVLNLLSNAMKYTVE-GSIQLAVN 736

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHG 453
           +  G    IS+ D+G GI+E +   V   F +   +++    G GLGL +   ++    G
Sbjct: 737 F-DGTWAEISVADSGIGISEQDAKLVFQPFRRLDSSLRGTVSGTGLGLYLTNKLVREVLG 795

Query: 454 GQFLIRSKLREGVEVIAILPN 474
           G     S + +G      +P 
Sbjct: 796 GTITFVSAVGQGSTFTIRIPV 816


>gi|91070494|gb|ABE11403.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HOT0M-1A11]
          Length = 688

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L+NE   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSNEEQLEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++ S+  
Sbjct: 469 LVNDVLDLSRLESGKI-IQLEEMDIKPAIEQTLRNYRLNATEKNVSLAHDIEETIPSILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NL+ N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLVGNGLKFSPKNSSLMIRAYTWPDSCPAFPPDDRNHGAPQCELISPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEITDTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|60679924|ref|YP_210068.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491358|emb|CAH06106.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 549

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++  EE N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I + 
Sbjct: 9   EKEHIEEMNQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKH 65

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q +  LI+E+LD  + +    +L  S  SL   + E  +     A +K+I    K+   
Sbjct: 66  AQQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQ 125

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+W D+  MR+V+ NLLSNA K     G + +    T  +   I++KD+G GI++ E 
Sbjct: 126 DISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQ-VVIAVKDSGNGISKEEQ 184

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F Q     K+   G G+GL + +SI+  H G   + S+L EG   I  LP TR
Sbjct: 185 ERIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPKTR 243


>gi|289551852|ref|YP_003472756.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659977|ref|ZP_07912835.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
 gi|289181383|gb|ADC88628.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315494878|gb|EFU83215.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
          Length = 607

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E              ++       + ++
Sbjct: 369 QQVERERREFVANVSHELRTPLTSMNSYIEALESGAWKDGALAPQ--FLSVTREETERMI 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 427 RLVNDLLQLSKMDNESDQINKEIVDFNMFINKIINRHEMSAKDT--TFVREIPNETIFAE 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 485 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVEKIF 544

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  
Sbjct: 545 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHHGRIWANSVEGQGTSIFITLPCE 598


>gi|229026129|ref|ZP_04182503.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
 gi|228735171|gb|EEL85792.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
          Length = 484

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RKR +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKRLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVHLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTV-LSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2091

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 19/247 (7%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +KSRFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1404 KLKEAMDSKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQTSANS 1459

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            LL +IN+ILDLS+++AG  +L+        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1460 LLMIINDILDLSKVDAGMMKLNFEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPA 1519

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---------ISIKDNGP 410
             V  D+  +RQV+LN++ NA+KFT+  G V          G            S+ D G 
Sbjct: 1520 WVKGDKVRIRQVLLNVIGNAIKFTSQ-GEVFSRCKVIVPEGVELGKAEIMLEFSVIDTGR 1578

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G  E E   +   F Q   +      G GLGL I++ +   HGG     +   +G     
Sbjct: 1579 GFTEQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGTMNGTAVPGKGSTFTF 1638

Query: 471  I----LP 473
                 LP
Sbjct: 1639 TARFGLP 1645


>gi|150376322|ref|YP_001312918.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150030869|gb|ABR62985.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 1126

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 178/446 (39%), Gaps = 30/446 (6%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           I      LV+ +  W+T+   +        W   +    +            D+     Y
Sbjct: 465 IALATAFLVSPLIAWWTEGKFYLARKPRKSWFSESEITCSIC---EHPFEPEDMAWCPAY 521

Query: 105 VWRIWLLVGQI------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
              I  L   +             +      +            L        + A+   
Sbjct: 522 AAPICSLCCSLDGRCHDMCKPKARLSFQIATVAKALLPETVVAKLATRLGRYAIAAVISI 581

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                +L      +        +        V     A +      F+         +  
Sbjct: 582 TGIGAILAMIAHQTTAASPETAAVVERTVAIVF-FVFAILAGIVSWFYVLAHDSRVVAEE 640

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +           IA  +   +   + ++RAE  N AKSR++  +SHELRTPLNA+LG+++
Sbjct: 641 ESSRQNTALLKEIAAHKKTDAALQDAKERAEAANRAKSRYVVGLSHELRTPLNAVLGYAQ 700

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P    + +  I  I RS  HL  LI+ +LD+S+IEAG+ ++  + I++ D +
Sbjct: 701 ILERDETIP---PSRQNAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFL 757

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + M + +AQ K I        +L   V  D+K +RQ+++NLLSNA+KFT   G +  
Sbjct: 758 DQIVDMFRPQAQAKGITFEHSRAAALPQYVRTDDKRLRQILVNLLSNALKFTER-GHIRF 816

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V +   +    +++D+G GI+E ++P +   F +G         G+GLGL I + +   
Sbjct: 817 DVAYR-SQVASFTVEDSGRGISERDLPKIFEPFQRGEAEY--RMPGLGLGLTITRLLTQT 873

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRV 477
            GG+  + S+  +G      L  + V
Sbjct: 874 LGGEISVTSERDKGTVFKVRLMLSAV 899


>gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 662

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E   ++   +   K       A+S FLA+MSHE+RTP+N +LG  ++++  ++     
Sbjct: 265 ITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVLGMLQILDASSLDN--- 321

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + ++G    S   LL +IN+ILD ++I++G+  L    I L  ++  C+ +    A+
Sbjct: 322 -EQRRFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDLNQVLNNCVDIFNPHAK 380

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399
           EK+I++ ++++ +  +S+  D   +RQ+  NLLSNA+KFT   G+V++    T       
Sbjct: 381 EKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQ-GQVNIATELTLLKKGKA 439

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I +KD+G G+ + +   + + F Q  ++      G GLGL I + +     G   ++
Sbjct: 440 TLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLSITRKLCQLMSGDVSVK 499

Query: 460 SKLREGVEVI----AILPNTRVLNFIPE 483
           S L +G          +    V    PE
Sbjct: 500 SVLNKGSVFSAQIEVGIMAKSVHPAEPE 527


>gi|313108338|ref|ZP_07794370.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310880872|gb|EFQ39466.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 741

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E       E  ++A+E N AKS FLA+MSHE+RTP+NA++G  E++          
Sbjct: 224 ITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLA---PE 280

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   + +   L  LI +ILD+++IE+G   L+   + L  +V     M +  A+
Sbjct: 281 QRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLAR 340

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  ++D +    V  D    +QV+ NL+SNA+KFT   G+V + +   S      
Sbjct: 341 QKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGRA 399

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D+G GIA  +   +   F Q +      + G GLGL I + ++   GG   + 
Sbjct: 400 IVRVGVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           S+  +G  V   L   +    +PE
Sbjct: 459 SEPGKGTRVSLDLLLRQCGPKMPE 482


>gi|326942456|gb|AEA18352.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 483

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVNLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESE 465

Query: 462 LREGVEVIAILPNTRVL 478
           L +G  +   L  +R +
Sbjct: 466 LGKGTSIFFSLEKSRGM 482


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  E+ N AK +F  ++SHELRTPL  I   ++ +         N   +  +  + R+ 
Sbjct: 364 RRIEEDANKAKLQFFTNISHELRTPLTLI---ADPVNYIIHDDNLNSQQRSMLQIVQRNV 420

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +++ G+ EL  S  +L + +++ I++    AQ+K+I I     P  
Sbjct: 421 LVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIMLFSASAQKKHIAISMN-APDA 479

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD+  + ++  NLLSNA+K+T+ GG + +T          IS+ DNG GI+  E+P
Sbjct: 480 VMLRADQDKIERICYNLLSNALKYTSEGGEITLTAK-EENGRVMISVADNGCGISSDELP 538

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F Q   A +    G G+GL I ++    H G+    S   +G      +P  +
Sbjct: 539 YIFDRFYQAKNAGR----GTGIGLAIVKAFTELHHGEVSATSIEGKGSTFTIHIPVRQ 592


>gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHL-YEKATYVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|239637304|ref|ZP_04678291.1| sensor protein YycG [Staphylococcus warneri L37603]
 gi|239597141|gb|EEQ79651.1| sensor protein YycG [Staphylococcus warneri L37603]
          Length = 608

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       N      ++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQ--FLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 428 RLVNDLLQLSKMDNESDQITKEIVDFNMFINKIINRHEMAAKDT--TFVREIPQQTIFAE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 486 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 603


>gi|228987920|ref|ZP_04148028.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771843|gb|EEM20301.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 484

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 KLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ V V        
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSI-DNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|229116715|ref|ZP_04246099.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
 gi|228666547|gb|EEL22005.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
          Length = 448

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG V   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ +  +  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEGMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 997

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 8/251 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I + +  ++     R  AE+   AKS FLA+MSHE+RTP+NAILG +E++    +   
Sbjct: 461 RDITDRKRLEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL--- 517

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +     Y+     +G++LL +IN+ILD+S+ EAG  EL +   S+ +++ +   +L  +
Sbjct: 518 -DADQSRYVRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLAYK 576

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +EK + +      +   S+  D   +RQV++NLL NA+KFT  G    +         Q
Sbjct: 577 CKEKGLYLLVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIADKQ 636

Query: 402 Y---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G GI++ +   V   F Q    I     G GLGL I QS++   GG+  +
Sbjct: 637 VQLAFHVVDTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKITV 696

Query: 459 RSKLREGVEVI 469
            S+   G    
Sbjct: 697 HSRADHGSTFT 707


>gi|261369013|ref|ZP_05981896.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
 gi|282568887|gb|EFB74422.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
          Length = 466

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 17/284 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-----KRAEEENL-AKSRFLASMS 257
           +  L +  V+ ++  AE  D I      + L    R     ++  E N   +  F A++S
Sbjct: 187 SAWLTRLLVQPINRLAENLDTIEADVPYEELIPLARTVQTDRKLRENNETMRREFTANVS 246

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL +I G++E+IE       +      +   IH+  + ++ L+++IL LS +++ 
Sbjct: 247 HELKTPLTSISGYAELIETGMAKSEDVPA---FAARIHKEARRMIALVSDILQLSELDST 303

Query: 318 RY------ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           +           + + L  +V+E    + + A++  + +     P  ++V      + ++
Sbjct: 304 QAARGQSAPPDMAPVDLAALVKEIAQTMTVNARKAYVTLQYDAHP--ATVQGCRDQLVEL 361

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
             NL  NA+++   GG V +  G  +    Y+ ++DNG GI +     V   F +   + 
Sbjct: 362 TTNLCDNAIRYNRPGGHVDLRCGVGADGCPYLEVEDNGIGIPQDSQSRVFERFYRVDKSR 421

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             A  G GLGL I + I   H  +  ++S++  G  +    P  
Sbjct: 422 SKATGGTGLGLAIVKHIALLHDARIDLQSQVGTGTTIKVTFPKK 465


>gi|160882267|ref|ZP_02063270.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
 gi|156112356|gb|EDO14101.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
          Length = 754

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYIG I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 566 VEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIA 625

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYI 403
              +E  +++D     +  D + + QV+ N L+NA KFT   G + +  +         I
Sbjct: 626 -PRLEFLKEVDNIPLEINVDRERLIQVLTNFLNNASKFT-EIGYIKLGYIYLPDEGHVRI 683

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 684 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGRIDLKSEVG 739

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 740 KGSRFTVILPCRVV 753


>gi|94969439|ref|YP_591487.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94551489|gb|ABF41413.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
          Length = 603

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMS 257
             L  +  ++    AE D L  EL+          +  DE     +  +  K+RFL++MS
Sbjct: 172 RELMAAMEQLRQKNAELDHLNHELDDTNRGVVALYAELDERAGFLQRTSELKTRFLSNMS 231

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE RTPLN+I+  S+++     G L +E  K+ +  I RS   LL L+N++LDL++IEAG
Sbjct: 232 HEFRTPLNSIISLSQLLLDRVDGDLGSEQEKQ-VTYIRRSADTLLELVNDLLDLAKIEAG 290

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +  +   +  +      ML+       + +  +  P +  +W DE  + Q++ N +S
Sbjct: 291 KVTVYPNEFRVNALFGALRGMLRPLLTNPEVSLTFEDAPEIGVLWTDESKVSQILRNFIS 350

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFT  GG V VT           S++D+G GIA+ +   V   F Q   A++   +G
Sbjct: 351 NALKFT-QGGEVAVTARLGQHDTVIFSVRDSGIGIAKSDQVRVFEEFTQIENALQRRNKG 409

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            GLGLP+ +      GG   + S+  +G    AI+P  RV +   E  HES
Sbjct: 410 TGLGLPLTKKFAELLGGSVSLESETGKGSVFSAIIP--RVYSDSMEKLHES 458



 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIP 418
           D+  +      L  NA ++   GG V+  +          +   + + D GPGI   ++ 
Sbjct: 36  DQVRIATATSELARNAFRYAG-GGEVYFDLAPGLGHLDQPQSLVVEVVDQGPGI--EDLQ 92

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +L    +G   + +   G+G+GL   + +M     +F I S   +G  V   
Sbjct: 93  RIL----RGRYVLNT---GLGMGLIGTRRLMD----EFDIESTPGKGTRVRVS 134


>gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
 gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
          Length = 583

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R ++    ++ F+A+++HE++TPL AI+GF + +    +   + ET ++++  I  + + 
Sbjct: 349 RLKKLEQIRTDFVANVTHEIKTPLTAIIGFLQTLLDGALD--DRETARKFLQTIATNAER 406

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++L LS IE     L    +S+  ++R  + M+   A+ KNI +   +  +  +
Sbjct: 407 LSRLVDDLLTLSSIELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVDLPEAFLN 466

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYISIKDNGPGIAEGEIPT 419
           + AD     Q+++N+L NAVKFT  GG V V+      G    I + D G GI   EIP 
Sbjct: 467 ILADRDRAAQILMNVLHNAVKFTPAGGIVTVSGSEEEKGNFVIIQVVDTGIGIPPREIPR 526

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   A      G GLGL I + +MA HGG+  I S   +G  V    
Sbjct: 527 LGERFYRVDKARSRELGGTGLGLSIVKHLMAAHGGKMRIESTPGKGTIVSLFF 579


>gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 847

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 191/492 (38%), Gaps = 20/492 (4%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLH---VESLFRVSPILPLFVLLV 59
           R +    + + ++       + L   +     RE+  L    +++   V  +    +   
Sbjct: 104 REQPAFARQLSVIRDFLDTSVPLIDGADDALARELPVLFEDMLDTRTTVRELAATGLGYF 163

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A       +     ++ L  L +          V+   +        R      +    +
Sbjct: 164 AQQADLRREEIADTLFYLAILTIVVLTGLFAASVVLFRLNRSNEARARTIEAASRRMETI 223

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIA-----LSISALSNFMLPYAVFLS-FFPVVVA 173
             T L  +     T   +    +A ++       +    +S  ++P  +  +    +   
Sbjct: 224 VNTSLDAIVVSNRTGRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPPHLRNAHEAGMERF 283

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            +T     +    I L  M +    F   +     + +   +     +D  I+    A++
Sbjct: 284 RTTGEKRVIGQGRIKLEAMRSDGSVFPAEMAIESAEGSDGEIFVGYLRD--ISHRVKAET 341

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              E R +A     AKS FLA MSHE+RTPLN +LG   +++    G   +    +Y+ +
Sbjct: 342 DLVEARDKAVAGEKAKSEFLAVMSHEMRTPLNGLLGTLALLK----GTKLSAKQAQYVDN 397

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  SG  LL  IN++LD+++ EAG+ ++      L  +VR  +   +  A      I   
Sbjct: 398 LEVSGGLLLTHINDVLDVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLASASENTIEWS 457

Query: 354 I-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNG 409
                L  V  D + +RQV++NL+ NAVKFT  GGR+ + +G     G     I++ D G
Sbjct: 458 WVGKPLPPVMTDPQRLRQVLINLVGNAVKFT-RGGRIRIEIGAVPQGGGADVTITVSDTG 516

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA  +I  +   F  G  +   A  G GLGL IA+ +    GG     S+L EG    
Sbjct: 517 IGIAPEDIDRLFEDFETGDRSYGRARNGTGLGLGIARRLTRALGGTIGAESELGEGSTFW 576

Query: 470 AILPNTRVLNFI 481
             LP     + +
Sbjct: 577 IDLPLDYASDPV 588


>gi|291521249|emb|CBK79542.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 446

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 12/291 (4%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRAEE 244
            +A M+       T++   L  S ++ +   AE  D + E+ V + +    D  R++ E+
Sbjct: 158 IIAVMVVILFVICTFLGRLLTDSLLRPIEQMAENMDYVNEIAVYQEMEPFIDTIRRQHED 217

Query: 245 ENL---AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                  +  F A++SHEL+TPL AI G+SE+IE    G ++ +    + G+IH+S   L
Sbjct: 218 ILKNASMRQDFTANVSHELKTPLAAISGYSELIEN---GMVSEKDIARFGGEIHKSADRL 274

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L LIN+ + LS ++A   ++    + L      C+  L++ A++ ++ +  + +     +
Sbjct: 275 LTLINDTIRLSELDATTQDVVLETVDLYQAAENCMDTLEMSAKKHDVTLKLEGESC--KI 332

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             ++    +VI NL  NA+++   GG V ++V     +   +S+KD G GI++     + 
Sbjct: 333 RTEKGMADEVIYNLCDNAIRYNNKGGSVTISVMPVDNQ-IVLSVKDTGIGISKEHQERIF 391

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   +   +  G GLGL I + I+A +G +  + S++ +G E+    
Sbjct: 392 ERFYRVDKSRSKSTGGTGLGLAIVKHIVARNGARMELTSEVGKGTEIRIYF 442


>gi|29141721|ref|NP_805063.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213051566|ref|ZP_03344444.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428552|ref|ZP_03361302.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213647231|ref|ZP_03377284.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854966|ref|ZP_03383206.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|29137349|gb|AAO68912.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 920

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W+L+TL  P       +       +        L+  +L  + F       +A  
Sbjct: 269 LHGPGWSLVTLY-PYGNLHNRILKTILQQIPF-----TLTALVLMTSAFCWLLHRSLAKP 322

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               + +     +              +       N  + + Q + D+L  ++       
Sbjct: 323 LWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL 382

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E +KRAE+ N  KS  L  +SHELRTP+N +LG  E+++   +    N   +       
Sbjct: 383 NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPL----NIEQQGLADTAR 438

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN +LD SRIE+G + L     +L+ ++ + +  +Q  AQ K + +   + 
Sbjct: 439 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 498

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      D   +RQ+++NLL NAVKFT  GG + +TV     +  ++ + D+G GI  
Sbjct: 499 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRHEEQLIFL-VSDSGKGIEI 556

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + T+F Q      +  QG G+GL IA S+    GG   ++S    G  V  +LP 
Sbjct: 557 QQQSQIFTAFYQAD----TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 612

Query: 475 TRVLNFI 481
                  
Sbjct: 613 QEYQPPQ 619


>gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 791

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 10/286 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +  + + + L          + + +  +  L       ++++ ++E+ +  KS+FLA +S
Sbjct: 231 AAISKVNHKLKDEVEIRRRAEKDLNAALENLSFTVRELEKSKDKSEKASQFKSQFLAMIS 290

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+NAILG  +++    +G   +     Y+     SG+ LL +IN+ILD  +IE+G
Sbjct: 291 HEIRTPMNAILGMGDLL----LGTELDPEQMGYVEIFRGSGELLLKIINDILDFVQIESG 346

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           + EL          V+     +   A  ++IE+   +   +   V  D   +RQV++N++
Sbjct: 347 QIELVPVPFDPSQDVQSVCKSVAHSAHARDIEVICDVAQGVPAQVVGDPVRVRQVLMNIV 406

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNAVK+T+  G V V +              +++D G GI EG+  ++   F Q      
Sbjct: 407 SNAVKYTSS-GEVEVCLSAEESGEDFERLLFTVRDTGIGIPEGQRESLFEGFVQADGLAS 465

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
               GVGLGL  A  +     G+    S+  +G      +P  + L
Sbjct: 466 REYGGVGLGLAAASRLAVLMDGEIRFESESGKGSIFYFSIPFKKSL 511


>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1197

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 14/287 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             H  +S +++    A +  +  +       + +  +R  E +  K+ F  ++SHE RTP
Sbjct: 503 PRHWLQSEIELAQAVASQAAIAVQQSRLYQKTRQQAERLMELDRQKTEFFQNVSHEFRTP 562

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  ++G  E    +  G        E      R+ + LL L+N++LDL R++AGR + S 
Sbjct: 563 LTLMIGPLESAINQHQGLPY-----EQSSIALRNSRRLLRLVNQLLDLQRLDAGRMQPSF 617

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +LI+ + + +   +   ++KNI +  ++ P    ++ D +   +V+ NLLSNA+KFT
Sbjct: 618 RPCNLIEFIHQIVETFKPYCEKKNINLLSQVIPC-PEIYLDIEKFDKVLYNLLSNAMKFT 676

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG + + V  T      + I D G GI++ ++P +   F Q   ++  + +G GLGL 
Sbjct: 677 NAGGSITIAVKST-DNKVCLKISDTGIGISKEQLPHLFERFRQAEGSVNRSYEGSGLGLA 735

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA-------ILPNTRVLNFIPE 483
           + + ++  HGG+  + S+  +G             LP  ++++   E
Sbjct: 736 LVKELVELHGGEIDVSSEQGKGTTFTIHLQQGKAHLPVEQIVDVATE 782


>gi|169349479|ref|ZP_02866417.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
 gi|169293554|gb|EDS75687.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
          Length = 562

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
               +  F +++SHEL+TP+ +I G+SE++E   +   + +  K+ +  IH    ++ NL
Sbjct: 336 AMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVI--NDEQAAKKALDKIHTEVDNMSNL 393

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+IL +SR+E    ++ +  + +  +V E I  +Q+   ++N  +    D +     ++
Sbjct: 394 INDILMISRLENKDVDVIKHPVHIEPLVNEIIDTMQVEIDKRN--LTVYKDINDIIYLSN 451

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + M Q++ NL++NA+K+    G + +           I + D G GI++ +   V   F
Sbjct: 452 HQHMHQLLSNLITNAIKYNKKDGSITIKAYEVE-HNIVIEVSDTGRGISKIDQGRVFERF 510

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +          G GLGL I + I+  + G  ++ SKL EG     ILP   
Sbjct: 511 FRCDEGRDKETGGTGLGLAIVKHIVHYYQGNIVLTSKLDEGTTFKIILPKEE 562


>gi|294498816|ref|YP_003562516.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348753|gb|ADE69082.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 475

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 118/246 (47%), Gaps = 3/246 (1%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++ +S       E     +  F+A  SHELRTPL+ +L     +E++     +    K+ 
Sbjct: 228 SRLMSKRAMVPIETAFQKQKEFVADASHELRTPLSVMLSSINALEMQEEVTED-PFSKKL 286

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I ++    + + +L++++L L+R ++ + E +     + D V++ +  ++  A  K+I++
Sbjct: 287 INNMKAEVKRMTSLVSDLLTLARSDSNKVEKAMMPFDITDAVQKVMESVETLAISKHIDL 346

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                  L  V  D++ + Q+I  LL NA+K+T   G V++ V    G    + ++D G 
Sbjct: 347 QLDTPEKLV-VTGDQERLTQLIYILLDNAIKYTTPHGSVNIQV-VQHGSECILKVRDTGV 404

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   E   +   F +   +      G GLGL IA+ I+  H G+  + S+  +G     
Sbjct: 405 GIHPDEKDRIFDRFYRADKSRSRQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTV 464

Query: 471 ILPNTR 476
            LP ++
Sbjct: 465 RLPMSQ 470


>gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 614

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 184/483 (38%), Gaps = 55/483 (11%)

Query: 48  VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107
               + L  L +  I         F  +     AV A +       + +     EV+   
Sbjct: 76  AGVAMILCALSLMGIAAPVLAGLNFAAYGAGLAAVGAFSHGNAVLWLMAAGLPLEVWFAT 135

Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL-- 165
                          +L      +  P     Y S  +L+  + S ++      A     
Sbjct: 136 RKPAAAAAGAAFAAMVLGYFATASGGPISGGSYVSVAVLVLYAASLVARGYASAAKPAQI 195

Query: 166 ---SFFPVVVALSTQAIMSMH-------------------------VLDISLAGMLATAL 197
              +    V A   Q  +                            ++D          L
Sbjct: 196 KVTAPQAAVAAGDLQFSLDSDGVVASVDMNSAKLLGVQSKMLEGTALIDRVHVADRVEYL 255

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL-------------------EVAKSLSDE- 237
           S    +      S V +     E  D +                      E  + L DE 
Sbjct: 256 SLLADLRAGSASSKVDVRLRSIENGDTVFRTYRLEGAASARAITLVGRSLEGEQKLLDEI 315

Query: 238 TRKRAE-EENLA-KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +AE E     K R LA++SHELRTPLN+I+GFS+++  E  G L NE  +EY G IH
Sbjct: 316 ATLKAELESERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIH 375

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +SG +LL L+N +LD SR+E G Y +     +  D    C  ++  +A++K +    ++ 
Sbjct: 376 QSGHYLLELVNAVLDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVG 435

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGI 412
             +  + AD + ++Q++LNL SNAVKFT  GG V +        G+    IS+ D G GI
Sbjct: 436 AGIGELVADRRAIQQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGI 495

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              ++  + T F +       A++G GLGL + + ++  H G   ++S   EG  V   L
Sbjct: 496 EPEDMQRIGTPFVRADNNYTRAQEGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRL 555

Query: 473 PNT 475
           P  
Sbjct: 556 PVA 558


>gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 799

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                +  KS F++++SHELRTPL +I G   +I     G L     K  +G    + + 
Sbjct: 301 ELRRIDRMKSEFVSTVSHELRTPLTSIRGSLGLIAGGVAGEL-PAMAKSLVGIASNNCER 359

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ LIN+ILD  +IE+G+       + L  ++ + +   +  A + N+++          
Sbjct: 360 LIRLINDILDSEKIESGKMHFELQQVELQPLLAQALAANEGFAGQHNVKLALDAPADAVR 419

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ NLLSNAVKF+     VH+ +   SG    + + D+GPGI E     +
Sbjct: 420 VSVDSDRLTQVVTNLLSNAVKFSPPASCVHIRLLR-SGGRVRVEVADSGPGILEEFRKRI 478

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +    + G GLGL I+++I+   GG     +K   G      LP     + 
Sbjct: 479 FQKFSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMGFTTKAGVGTVFHFELPEA---SP 535

Query: 481 IPEDNHEST 489
           +P ++ +S 
Sbjct: 536 LPVEDRDSA 544


>gi|294777087|ref|ZP_06742544.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294448956|gb|EFG17499.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 632

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 138/266 (51%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 374 LIAIYYIIRINHLKHNLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 433

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            V+  +   P   E    Y   I ++   LL+LIN+ILD+SR+E+GR +       ++++
Sbjct: 434 SVLVSDDSSPAEKEL---YCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEECDVVEL 490

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +  ++   +   + +F+   PSL  V  D + ++QV++NLLSNA KFT   G + +
Sbjct: 491 CQTALSTVEYGRKTSALFLFETPVPSLV-VKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 548

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           TV       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 549 TVAIDKQHQQLELSVSDTGCGIPPDKSEKVFERFEKL----NEYSQGTGLGLAISRLIIE 604

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 605 NLGGKIWVDKDYTEGARFVFTHPLTK 630


>gi|326316997|ref|YP_004234669.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373833|gb|ADX46102.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 595

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 7/273 (2%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +++  A     + +LE        +  +A   N AKS FL ++SHELRTPL +I GF+E
Sbjct: 329 ALVALCAGFLRGLRQLEQKNVALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAE 388

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E      L   +Y+E  G I  + +HL  L++EILDL++++AG   +     ++ ++V
Sbjct: 389 LMEQR----LEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELV 444

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
              + +  + A +K + + ++I P +  +   D   ++Q++ NLLSNA+KFT  GG V +
Sbjct: 445 GTTVDLFAISAAQKGLTLEKRIAPDVPHMLRCDGLRLKQILNNLLSNALKFTREGG-VRL 503

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V     R     + D GPGI       +   F QG   + +   G GLGL +++ +   
Sbjct: 504 EVDTAEARNLRFRVIDTGPGIPADLHEVIFEKFSQGGAEVSTQHGGTGLGLALSRGLAEL 563

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            GG+  + S+   G      LP        P  
Sbjct: 564 MGGRLTVASETGHGACFTLELPM-PAQEPPPAA 595


>gi|225863934|ref|YP_002749312.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790705|gb|ACO30922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 459

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 154 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 213

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 214 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 269

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 270 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 327

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 328 IWQLTPNAEEKKMQFIKTIE--RIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 385

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 386 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGT 440

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 441 INIISKEGIGTTILIKLPL 459


>gi|114706954|ref|ZP_01439853.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537504|gb|EAU40629.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 490

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 110/478 (23%), Positives = 189/478 (39%), Gaps = 31/478 (6%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
                          P++       +     S      +    V  VA            
Sbjct: 16  SRSREGHAYQPFSSAPARGS-----LLGFKRSHLTGGLLSGALVASVATPVMAAADMSGA 70

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +   + LA  A   +      N               +    A       L L +    
Sbjct: 71  IVAMPLFLAGIAVAAASLLGGSNVTDGTEATS------IKLSAAHPTADAALPLAD---- 120

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                 ++ +A  +++ +   +        +               ++       ++A +
Sbjct: 121 ------LFGAAAYVVSSAGCIMKGNRAGEVLSDEIGTHAGPPVLFDLLDSASRATAMAAL 174

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----EENLA 248
                   T    +     + +L+   E + L     VA   +    + AE      + A
Sbjct: 175 REHTSHPVTVRLKNDETRLLHVLTLDGETNVLTVLRPVA-GDAKGANQLAEPEPGRLSEA 233

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
               LA++SHELRTPLNAI+GFS ++E E  G LN++  +EY+G I  SG+HLL+++N+I
Sbjct: 234 ---MLATVSHELRTPLNAIIGFSGILENELFGALNSDKQREYVGLIQSSGRHLLSVVNDI 290

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+IEAG Y+L      L ++V E   M++ +A +K + I     P  +++  D + +
Sbjct: 291 LDVSKIEAGAYQLHCEHFLLDEVVEEASAMVRCQADQKGVSIEIACPPGGTTIHGDRRAL 350

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
             +++NLL+NAVKFT   G V ++    +GR   +++ D G GI   +I  +   F Q S
Sbjct: 351 NHMLVNLLANAVKFTDA-GTVTLSWER-AGRDLRLNVADTGIGIPADQIGKLGKPFVQAS 408

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             +    +G GLGL   + +   HGG   I S   EG  V+  +P         ED +
Sbjct: 409 CGMSRRYEGTGLGLAYVRGMCELHGGAMTIESTEGEGTRVMLDMPLVPRQATTIEDKN 466


>gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
 gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
          Length = 1261

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 7/253 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E    +  + E  +   E +  K  FLA +SHELR PL  +    ++++ +     N 
Sbjct: 863  ITERSRLEQKTQEQAQALAELHQRKDEFLAMLSHELRNPLAPLASAVQLLQRQK----NE 918

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               ++ +  I R    L +L+++++++SRI +G   L +  +SL D+V   +   +    
Sbjct: 919  APQQQALSIIERQTGQLKHLVDDLMEISRITSGSVRLRQERVSLGDVVERALETTRPLML 978

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401
            ++  E+   + P    + AD   + QV++NLL+NA K+T  GGR+ ++ G          
Sbjct: 979  QRRHELAVSLPPEPLWLHADATRLEQVLVNLLTNAAKYTDKGGRIWLSAGQEEAAGTGAA 1038

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             + ++D G GIA   +P +   F Q   +I  ++ G+G+GL + + ++  HGG   +RS 
Sbjct: 1039 VVRVRDTGIGIAPELLPRIFDLFTQAERSIDRSQGGLGIGLCLVRRLLELHGGTVDVRSV 1098

Query: 462  LREGVEVIAILPN 474
            L +G E +  LP 
Sbjct: 1099 LGQGSEFVVRLPV 1111


>gi|168213657|ref|ZP_02639282.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
 gi|170714858|gb|EDT27040.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
          Length = 471

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 151/309 (48%), Gaps = 12/309 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF V + +    +    +L   LA  +   ++    ++  + K N+K+ +     D++  
Sbjct: 165 FFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEK 224

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +++E     E   + K+ F++S+SHELRTPL +I G++  +  +     + ET
Sbjct: 225 LADSLNIMAEE----IENREILKNEFISSVSHELRTPLTSIKGWAITLNNDF---TDRET 277

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K     I +    L N++ E+LD S+  +G+ +L    I+L + +    + +  RA+ +
Sbjct: 278 LKMGFDIIEKEADRLSNMVEELLDFSKFVSGKIKLKYEEINLKEFIEYLRLYMNPRAERE 337

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + E+  K       +  D+  ++QV +N++ NA KFT    ++ +   + +  G YI+I 
Sbjct: 338 HKELILKGITEDFIIVGDKDRLKQVFINIIDNAFKFTHENEKITIEFVY-ADEGIYINII 396

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ E+P V   F +G  +        G+GL I   I+A H G   I S+L +G 
Sbjct: 397 DTGCGISKEELPRVKEKFYKGKNSKSQN----GIGLSICDEIIALHEGTLEIYSELGKGT 452

Query: 467 EVIAILPNT 475
           +V+  LP  
Sbjct: 453 KVVIYLPKK 461


>gi|294506248|ref|YP_003570306.1| Two component system histidine kinase, [Salinibacter ruber M8]
 gi|294342576|emb|CBH23354.1| Two component system histidine kinase, putative [Salinibacter ruber
            M8]
          Length = 1198

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 134/267 (50%), Gaps = 5/267 (1%)

Query: 211  NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            N++++   +    L+      ++   + ++ AEE +  KS  LA+MSHE+RTPL +I+GF
Sbjct: 922  NLRLIEVLSGYAALVLNRLDREATLRDAKEEAEEASRMKSALLANMSHEIRTPLTSIIGF 981

Query: 271  SEVIELET--MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            +EV+  E   +         +    I R G+ LL+ +  +L+LS++EAG+ EL    + L
Sbjct: 982  AEVVGTEASTLDLPTGSPLPDCADRIERGGKRLLDTLEGVLNLSKLEAGQMELDAEPVPL 1041

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            I  V+     LQ +A+EK I++  + + + +   ADE G++ +  NLLSNA+K+T   G 
Sbjct: 1042 ISEVQRVAEELQPKAREKEIDLRLETESAWAE--ADEGGVQIIARNLLSNAIKYTEADGT 1099

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V V   + +     + ++D G G+A   +  +   F Q S       +G G+GL + +  
Sbjct: 1100 VWVR-SYRADGRAVLEVEDTGIGMAPEAVDDLFEPFRQASEGFSREYEGTGVGLAVTKRA 1158

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNT 475
                 G   + ++  EG      LP  
Sbjct: 1159 AEEMDGSVDVDTEEGEGSRFTVRLPTA 1185


>gi|229194968|ref|ZP_04321749.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
 gi|228588536|gb|EEK46573.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
          Length = 463

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKEATSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKSISIAIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 136/265 (51%), Gaps = 2/265 (0%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           +++    +     L  E         +      + N  K+ FL   +H+LR PL AI   
Sbjct: 108 HLETEELRRNLVQLNNEFSNLNRELQKKNIELTKLNELKNHFLGMAAHDLRNPLGAIRNL 167

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           SE +  E    L++E Y +++  IH S   +L+L++++LD++RIEAG+ EL   +  LI 
Sbjct: 168 SEFLLEEARDSLSDE-YIQFLELIHTSSNFMLSLLDQLLDIARIEAGKLELDFQSTDLIS 226

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +++  + + ++ A++K I+I  +   ++  V  D   + QV+ NLLSNA+KF+  G  + 
Sbjct: 227 LIKSVVDINKILAEKKKIQIRLEHFETIPYVELDSMKIEQVMHNLLSNAIKFSPEGNLIK 286

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V V + SG    +++ D GPGI E +I  +   F + S+     E+  GLGL I   I+ 
Sbjct: 287 VHV-FLSGEHVTVAVTDKGPGIPEEDIQKLYQPFTKTSVKTPEGEKSTGLGLAIVHKIIL 345

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
            H G+  + SK+ +G      LP  
Sbjct: 346 GHMGKIWVESKVDQGTTFFFSLPVK 370


>gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 1002

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 130/308 (42%), Gaps = 8/308 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAELE 229
             AL   A        + L  +           +  +  +   +      +         
Sbjct: 274 FGALPGGAWTQPPHQAVILPLLRFGQHPLGLLLVGVNPHRRLNQADQAFFDLVAGQVTTA 333

Query: 230 VAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           +A +L+ +E R RAE   E + AK+ F +++SHE RTPL  +LG +     +   PL+  
Sbjct: 334 IANALAYEEERHRAEALAELDRAKTAFFSNVSHEFRTPLTLMLGPAADALADQEDPLSPG 393

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +  I  I R+G  LL L+N +LD S+IE+ R +       L     E   + +   ++
Sbjct: 394 QQQR-IELIQRNGLRLLKLVNTLLDFSQIESDRLQAVYEPTDLATFTAELASVFRAAIEQ 452

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +       P    V+ D +   +++LNLLSNA KFT   G + V +     +   ++I
Sbjct: 453 AGLRFVVDCSPLPEPVYIDREMWEKIVLNLLSNAFKFTFS-GEITVRLQQRGEQ-VELAI 510

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI   E+P +   F +   A     +G G+GL + Q ++  HGG   + S    G
Sbjct: 511 QDTGIGIPVTEMPRLFERFHRVKGAQGRTFEGSGIGLSLVQELVKLHGGTVQVDSVEGSG 570

Query: 466 VEVIAILP 473
                 +P
Sbjct: 571 SCFRVSIP 578



 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 8/331 (2%)

Query: 148  ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            A+++  L   +    +     P +       ++    L  S+  +L +A +        L
Sbjct: 678  AIALERLQQDLPDLVLTDVMMPEMDGFQLLQVLRSDPLTQSIPVILLSARAGEVATIAGL 737

Query: 208  FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                   L       +LIA +E    +S    ++ E  N  K+ FL +++HEL+ PL  I
Sbjct: 738  AAGADDYLIKPFSARELIARVETQLQMSRL--RQEESANRFKTEFLLTVTHELQAPLATI 795

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG++ +++ ++  P   +T  + +  I R+      L+ ++LD+S + +G   L      
Sbjct: 796  LGWARLLQAKSFNP---DTTTQALAAIERNATIQAKLVKDLLDISSLLSGNLRLKAQLFD 852

Query: 328  LIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            L+ +V+  +   +  A+ K I++     + +      D   +RQVI NLL NA+KFT  G
Sbjct: 853  LVALVQNAMAKFRPLAEAKGIDLAELSTNVASFPALIDGDRLRQVITNLLDNALKFTPAG 912

Query: 387  GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            G+V + +         I++ D G GI    +P +   F Q     +    G+G+GL IA+
Sbjct: 913  GQVAIQLERQ-DAEVQITVTDTGIGIRPDFLPYIFDRFTQAESPSRYTPGGLGIGLAIAR 971

Query: 447  SIMANHGGQFLIRSK-LREGVEVIAILPNTR 476
             ++  H G  +  S    +G      LP  R
Sbjct: 972  HLVELHHGTIIATSAGEGQGTTFTVRLPLGR 1002


>gi|295093298|emb|CBK82389.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 672

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A+ L  E  + A+  N AK+ FL+ MSH++RTP+N ILG S + E       + +   +
Sbjct: 280 RAQKLLAEAYEEAKRANTAKTEFLSRMSHDIRTPINGILGMSRIAEQCI---DDRDRVMD 336

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  +G+ L  LIN++LD+SR+E+GR EL+     +I ++R     + + AQE +++
Sbjct: 337 ALSKIDDAGKQLELLINDVLDMSRLESGRTELTSEPFDIIKVLRSGYDPILVMAQENDVK 396

Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YIS 404
           +     +   + V      ++++ LN+L+NA+K+   GG V   +      G+       
Sbjct: 397 LKGAHFNIKHNMVIGSPLHLQRISLNILTNAIKYNKPGGTVEAWMDEIPVDGRHSNYVFR 456

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G G+++  I  +   F +      +  QG GLG+ I + ++   GG   + SK   
Sbjct: 457 IADTGVGMSQEFISHLFEPFSREHTDAGTKYQGTGLGMAITKELLDLMGGSIEVDSKPGV 516

Query: 465 GVEVIAILPNT---RVLNFIPEDNHES 488
           G      +P      V+     ++HE+
Sbjct: 517 GSTFTMKIPFEICTDVVEPEKPEDHEA 543


>gi|324328565|gb|ADY23825.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 484

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|289422516|ref|ZP_06424359.1| alkaline phosphatase synthesis sensor protein PhoR
           [Peptostreptococcus anaerobius 653-L]
 gi|289157088|gb|EFD05710.1| alkaline phosphatase synthesis sensor protein PhoR
           [Peptostreptococcus anaerobius 653-L]
          Length = 438

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 9/313 (2%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           S   V   +     +++  L   L   L   L  +    +   +    I     E     
Sbjct: 132 SVIRVSKTMYNMVAIAIDFLPFMLGIFLIMLLLSWMIARWQTRRIIGPINDIDLENPLEN 191

Query: 226 AELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 + L    D   K+ +  +  +  F A++SHEL+TPL +I G++E+++   +   
Sbjct: 192 ITYRELEPLLVAMDLNNKQKDMVSNMRKEFSANVSHELKTPLTSISGYAEIMKNGIVKEK 251

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +      +   IH+    L+ L+N+I+++SR++ G  ++ +  + L ++ RE    L  +
Sbjct: 252 D---ITNFADRIHKEASRLIKLVNDIINISRLDEGYVDIEKEDVDLFEMSREISSRLAKQ 308

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A +K I++    +          + +  ++ NL+ NA+K+    G+V + VG T      
Sbjct: 309 ANDKGIKVAL--EGERVICHGIRQILDDMVYNLVENAIKYNKENGKVTIWVGSTLDG-VK 365

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA+ E   +   F +   +      G GLGL I +     HG    + SKL
Sbjct: 366 IRVTDTGIGIADEETDRIFERFYRVDKSHSKEIGGTGLGLSIVKHGAMVHGASLSVDSKL 425

Query: 463 REGVEVIAILPNT 475
            EG       PN 
Sbjct: 426 GEGSVFEIRFPNA 438


>gi|228929722|ref|ZP_04092739.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829901|gb|EEM75521.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 484

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|218905899|ref|YP_002453733.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218534871|gb|ACK87269.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 484

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|254252656|ref|ZP_04945974.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124895265|gb|EAY69145.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1265

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 130/291 (44%), Gaps = 4/291 (1%)

Query: 196  ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            +   +  +    +++    +         I +L+ A   +   +  AE  N AK  FLA 
Sbjct: 841  SEGRWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGNAQSAQLDAERANTAKDNFLAL 900

Query: 256  MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +SHELR PLN I  ++ V+    E   P + +  +  +  I R  Q    LI+++LD+SR
Sbjct: 901  VSHELRAPLNVISNWAAVLMAASERGVPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSR 960

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            I +GR+ L    +     +R  +   +  A +K I +        + V  D + ++QV  
Sbjct: 961  ISSGRFSLDAKPVDFAAAIRTVVESHRPIAAKKAIVLATSDLQGQAIVSGDARRLQQVAS 1020

Query: 374  NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            NL+ NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q   +   
Sbjct: 1021 NLIGNALKFTPQGGRVEVALTRL-GALIELSVTDNGIGVKPELLPRLFDRFMQSDTSRTR 1079

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPE 483
               G+GLGL I + ++  HGG     S+    G  +   +P  +      E
Sbjct: 1080 QYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVRIPLLQTATTEQE 1130


>gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1186

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 13/280 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
            T I   L +  +     +     +  E +         +++AE+ + AKSRFLA+MSHE
Sbjct: 453 LTLIPVQLGQEMLLTAFIRDISRRMEYETQ-----LKLAKEQAEQGSEAKSRFLATMSHE 507

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +R+PLNA+LG  E+I   T+    N+  + Y      +G  LL+ IN+ILD S+IEAG+ 
Sbjct: 508 IRSPLNAVLGSVELILESTL----NKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQI 563

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            L ESA S   +  + + +L  +AQ+K I +   ++ ++   +  D + +RQV+ NL+ N
Sbjct: 564 VLEESAFSPAKLATQVLQVLSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDN 623

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           A+KF+  GG V + +         +   I D G GI+E    T+   F Q      +   
Sbjct: 624 AIKFSF-GGCVAIEMWLADVDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYS 682

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           G GLGL I   ++A  GG   + S+  +G      L   R
Sbjct: 683 GTGLGLAICAELIAQMGGHIGVDSQQGQGSCFSFDLLLKR 722


>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
 gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
          Length = 1104

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 169/461 (36%), Gaps = 23/461 (4%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97
           I  ++  +  +   L   + +      +                V   ++ +      S 
Sbjct: 226 IRSYLYYVLAMFCTLMGKISINGVGFQYLWPESPGWNLISTPFWVSLGSIFIL-LFTRSF 284

Query: 98  IKIGEVYVWRIWLLVGQIAIGLCW-TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
           ++    + +    L     + + W  ++  +      P    +   A       +     
Sbjct: 285 LETDRHFPY---FLKMAFFL-IIWHGVVIALLFVAHIPALNLMIAGALATFVTVLIT--- 337

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
                 +          L     +S   + I     +     F  Y       + V +LS
Sbjct: 338 -AFRSLIRGVRQARFFFLGWLIFLSGVTVTILERAAVIPYSLFAEYAGQGAMTAEVVLLS 396

Query: 217 C------QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                  Q  +++  A  E A+    E  +   + +  K+ FLA  SHELRTPL  ++G 
Sbjct: 397 LALADKIQIMREEKAAAEEEARESQQEALENLRKADALKNEFLAVTSHELRTPLYGMIGI 456

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E ++    G    E  K+ +  I  SG  L +LIN+ILD S+++ G   L   A+ +  
Sbjct: 457 AESLKEGAAG-EPPEDMKDQLDTIVASGNRLAHLINDILDFSKLKHGSLRLDVKAVDVKH 515

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +      +       K + +   +   L  V AD   ++QV+ NL+ NA+KFT   GR+ 
Sbjct: 516 LASFVTAVTGPLIAGKPVLMQIDMPDDLPRVKADPNRIQQVLYNLVGNAIKFTEK-GRIT 574

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           ++    +G+   + + D G GI + E   +   F Q          G G+GL I + ++ 
Sbjct: 575 LSAKA-AGKFVTVRVSDTGIGIPKQERDAIFDPFVQVDQLSDHRPDGTGIGLTITKQLLE 633

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
            H  +  + +   EG      LP    ++   ED  E+T+ 
Sbjct: 634 LHDSRLEVDTDTEEGASFFFALP----IHQESEDVREATEI 670



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 120/280 (42%), Gaps = 16/280 (5%)

Query: 206  HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----EENLAKSRFLASMSHELR 261
             + K N ++ +   E ++ +AE   A   S+E   RA         A+ + L++++HEL 
Sbjct: 811  RIKKMNEELKALNVELEEKVAERTKALGTSNEALTRANKSLVAAEDARKQLLSNIAHELG 870

Query: 262  TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            TP+  I  + + +    +   +      Y   + +  Q L  LI+++ DL+R E     L
Sbjct: 871  TPVALIHSYMQSVRAGLIAMDDP----YYHQQVEKKIQILNRLISDLFDLARFEQDHKIL 926

Query: 322  SESAISLIDIVRECIIMLQLRAQEKNIEIF------QKIDPSLSSVWADEKGMRQVILNL 375
                 S+ D + +     +    + +           +          D + M QV+ NL
Sbjct: 927  QRETFSVSDWLTKVDETCRFEVTQHHRRYEGPEIGAFEPYKREWYCHVDVERMDQVLSNL 986

Query: 376  LSNAVKFT-AIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
            + N+VKFT    G + +T  W  + R   I I DNG GI +  +P +   F +       
Sbjct: 987  IVNSVKFTTEDDGTIRITAEWDLNERKLVIGIHDNGAGIPKEAVPFMFDRFYRAGDHSGF 1046

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +G GLGL I + I+ +HGG+  + S+  +G      +P
Sbjct: 1047 KPKGSGLGLAIVKQIIESHGGEVDVTSEQGKGTSFFITVP 1086


>gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 503

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 9/254 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             +  AE  N AKS FL+SMSHELR+PLNAILGF++++  ++  P   +     I  I +
Sbjct: 114 RAQAAAEGANRAKSDFLSSMSHELRSPLNAILGFAQLMASDSPPPPPAQQAS--IDQILK 171

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +G HLL LINE+LDL++IEAG+  LS   +SL + +REC  M++ +A ++ + +      
Sbjct: 172 AGWHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQQALKRGVRMRFPSFN 231

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               V AD   ++Q++LNLLSNA+K+    G V V+V  T+G    IS++D G G+A  +
Sbjct: 232 FPCFVRADRTRLKQILLNLLSNAIKYNRDQGTVEVSV--TAGDRIRISVRDTGAGLAREQ 289

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  +   F +        E+G G+GL +A+ ++   GG     S +  G      LP +R
Sbjct: 290 LAQLFRPFNRLGQ-EAGPEEGTGIGLVVAKRLVELMGGSIGAESAVEAGSVFWVELPASR 348

Query: 477 VLNFIPEDNHESTQ 490
                PE   ES +
Sbjct: 349 ----PPELAGESVE 358


>gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1]
 gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 12/233 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN I+G SE++         +  ++ Y G IH SGQ LL +IN+I
Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLA--AAPENLDPEHRRYAGLIHDSGQALLTIINDI 359

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEAG  EL+E   +L D V   + + +     ++I +  +  P L   +  D + 
Sbjct: 360 LDFSKIEAGHLELAERQFNLHDAVTTTLELAKATTGARDIPLKLEYSPELPGELLGDPQR 419

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--------ISIKDNGPGIAEGEIPT 419
           +RQV+LNLLSNA+KFT   G + + +                  ++KD G GIA   +  
Sbjct: 420 LRQVLLNLLSNALKFT-ESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQ 478

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +F Q   +    + G GLGL I + ++   GG   + S+  +G     I+
Sbjct: 479 IFEAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIEVESEPGQGSSFQVII 531


>gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 951

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 8/264 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 450 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN----R 505

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 506 LVAAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLT 565

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP +   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 566 LYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCR-DGYLEFVVRDT 623

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 624 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 683

Query: 469 IAILPNTRVLNFIPEDNHESTQYK 492
              +P  +   + P   + S Q K
Sbjct: 684 GVRIPLYKA-RYAPAAINASLQGK 706


>gi|228964975|ref|ZP_04126077.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794716|gb|EEM42220.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 235

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L 
Sbjct: 9   EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLS 65

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD+
Sbjct: 66  QNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHVTADQ 123

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + M QV +NL+ N++KFT  GG + + +         + I D+G GI+E +   +   F 
Sbjct: 124 ESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRICDSGIGISEEQKQHIFERFY 182

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 183 KADSSRNRAYGGSGLGLAIVKKVLDLHQGEINVESEEGKGTEFIVRIP 230


>gi|153807836|ref|ZP_01960504.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
 gi|149129445|gb|EDM20659.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
          Length = 1348

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 6/263 (2%)

Query: 210  SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
            + + +LS   +       L+ +  L  + ++  E+ N AK +F +++SHE RTPL  I+ 
Sbjct: 774  TIIGLLSSYYKFQKSQYMLKASLELERKEKENLEKINQAKLQFFSNISHEFRTPLTLIIS 833

Query: 270  FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             SEV+    +  ++       I DI+R+ Q L+NLI+E+LD  ++E G+ +L  S   ++
Sbjct: 834  QSEVLMKSRISSIS---LSNKILDIYRNSQLLMNLISELLDFRKLEQGQMQLKVSKQDIV 890

Query: 330  DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              V E  +  +  A  K IE     +      W D K +++V  NLLSNA K+T    RV
Sbjct: 891  SFVNEIFLSFKEYASNKQIEYQFSSNEPKVYCWFDAKQLQKVFFNLLSNAFKYTKKNDRV 950

Query: 390  HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             V +     +   I + D G GI    +  +   F Q S +I       G+GL ++++I+
Sbjct: 951  IVQIE-NESQIIKIKVIDTGIGIDREYLEHIFERFYQVS-SITR-TPSTGIGLALSKAIV 1007

Query: 450  ANHGGQFLIRSKLREGVEVIAIL 472
              H G   + S    G   I  L
Sbjct: 1008 EMHHGIIEVDSTPGNGSTFIVTL 1030


>gi|315658231|ref|ZP_07911103.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
 gi|315496560|gb|EFU84883.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
          Length = 588

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 112/230 (48%), Gaps = 3/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A +SHELRTP++ + G++E I    +     E  KE +  +      L  L
Sbjct: 361 LDQMKKDFIAIVSHELRTPISLLQGYTESIVDGIVTE--PEEIKESLSIVLDETNRLNRL 418

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +     + +A + ++ ++   + + +  + D
Sbjct: 419 VNELLNVARMDAEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYD 478

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV+ NL+ NA ++T  G  + +T    + +   + I D G GIA   +  V   F
Sbjct: 479 SDRIDQVLTNLIDNATRYTQPGDTISIT-SEDTDKYNVLHINDTGSGIAPEHLNLVFDRF 537

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +    +QG GLGL I + I+  HGG   + S + EG      LP 
Sbjct: 538 YKVEASRTRGKQGTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 131/255 (51%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E E  +     ++  A   N AK+ FLA+MSHE+RTPLN I G  +++   +     +
Sbjct: 436 LTETEAMRKELIASKDAAVAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATTS----PD 491

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +EY+    +S + L +L+++ILDLS+IEA + ++   A    ++V+    +  L A+
Sbjct: 492 DEQQEYVTAALKSAKRLSSLLSDILDLSKIEANKLDICRKAFPFQELVQSLKDIFVLSAR 551

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400
           EK + I   ++  +   +  DE  +RQ++ NL+ NA+KFT  GG V V       ++   
Sbjct: 552 EKALRIKFSVEDGIPGHLVGDEIRVRQILFNLIGNAIKFTETGG-VAVKACLLPESADGR 610

Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
             I  S+KD G GI E ++  V   F Q   +    +QG GLGL I + ++    G   I
Sbjct: 611 VRILFSVKDTGIGIREDKVHYVFEPFAQADGSYIREQQGAGLGLTIVKRVVEMLDGILCI 670

Query: 459 RSKLREGVEVIAILP 473
            SK   G  +   LP
Sbjct: 671 DSKFGSGTTISVALP 685


>gi|254505157|ref|ZP_05117308.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222441228|gb|EEE47907.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 1130

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 10/361 (2%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
               L  P     +      + T +  ++        + + ++      +   +      
Sbjct: 558 AGAVLPVPVMEMFQTRLGRYALTAVFGIAAIG----AVLWIIYAQAVSRLGDPTGVLGEI 613

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
           + ++    A     A  F          +  +     A     I    V  +   + ++ 
Sbjct: 614 VALIFFVFAIAAGIASWFLVLAHDTRHVAEEESARQNALLQKEIDAHSVTDAALQKAKED 673

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  NLAKSR++  +SHELRTPLNA+ G+++V+E +   P      K  +  I RS +HL
Sbjct: 674 AEAANLAKSRYVVGLSHELRTPLNAVRGYAQVLERDEALPTA---RKPAVTTIRRSAEHL 730

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
             LI+ +LD+SRIEAGR ++  + I+  + + + + M +++A+ K ++   +   +L   
Sbjct: 731 SGLIDGLLDISRIEAGRLQVYSNEINCHEFLDQIVDMFRMQAKAKGLDFHFERAENLPVI 790

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DEK +RQ+++NLLSNA+KFT   G V   V +   +     ++D+GPGI   E   +
Sbjct: 791 VRTDEKRLRQILVNLLSNAIKFTDA-GHVSFAVTYR-SQVASFVVEDSGPGIPLNEQTKI 848

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F + +        G+GLGL I + +    GG   + S   +G      L    V   
Sbjct: 849 FEPFARSAAQETDRIPGLGLGLTITKLLTETLGGAVALSSAEGQGSRFEVRLMLAAVDKP 908

Query: 481 I 481
           +
Sbjct: 909 V 909


>gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 962

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 127/272 (46%), Gaps = 5/272 (1%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +          +L    ++D     L +  +  D++   A+     KS F++++SHELR
Sbjct: 439 RLLRADGSELPVLLRGYIQRDAKGKPLRITGTAMDQS--EAKRIERLKSEFVSTVSHELR 496

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL AI G   +I    +GP+  E  +  +     + Q L +LIN++LD+ ++EAG+ + 
Sbjct: 497 TPLTAIAGSLGLINGGALGPV-PEGMRTMLSIAQANSQRLSHLINDLLDMDKLEAGKMQF 555

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L+  +++ +   Q  A  + I++     P  + V  D   ++QV+ N +SNAVK
Sbjct: 556 DLQPCPLVAQLQDALDSNQAYADRQQIQLRLLDCP-PARVRIDAIRLQQVLANFISNAVK 614

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++  G  VH+           + + D GPGIA      + + F Q   +   ++ G GLG
Sbjct: 615 YSPPGAEVHLRAERR-DTRVRVEVIDQGPGIAGEFRQRIFSKFSQADASDSRSKGGTGLG 673

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           L I++ ++   GGQ    S   +G      LP
Sbjct: 674 LAISKELIERMGGQIGFDSVEGQGACFWFELP 705


>gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1096

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 137/275 (49%), Gaps = 11/275 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + +  AE  N+AKS FLA+MSHE+RTPLN I+G   + E + +     
Sbjct: 695 ITDRKRYERDLRQAKDAAEAANVAKSEFLANMSHEIRTPLNGIMGILHLFESQDL----P 750

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +   + S   L  L+++ILDL+RIE+G+  +  +  +  ++    + +  L AQ
Sbjct: 751 GEQKKLLELANTSAGRLNGLLSDILDLARIESGKLAIQSAPFAPRELRASTLGLFTLAAQ 810

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
            KN+ +   +D +L S+   DE  +RQV+ NL+ N++KFT   G V V VG   G     
Sbjct: 811 GKNLSLEFILDDTLPSMLEGDESRLRQVLFNLVGNSLKFTRA-GFVRVEVGPLPGGASPR 869

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D+GPGI++ ++  + T F QG  +     QG GLGL I + I+    G   + S
Sbjct: 870 ILFCVTDSGPGISDHQLKDIFTPFVQGEDSYVRRHQGAGLGLAIVKRIVGLMDGCLCVDS 929

Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
               G  +   LP +         +H+    K  A
Sbjct: 930 SAN-GTTICFSLPMS-ASTAAQTASHDPAPIKGKA 962


>gi|126663362|ref|ZP_01734360.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
 gi|126625020|gb|EAZ95710.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
          Length = 722

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                   +++AE  + A++ FL+++SHELRTPLNAI G + ++  E        +   Y
Sbjct: 339 KNKELTLEKEKAERASKARADFLSTVSHELRTPLNAINGITYLLLQEK----PKVSQLNY 394

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  SG +LLN IN+IL+++R+E+ +  + +   +L ++        +    E NI  
Sbjct: 395 LKSLEFSGNYLLNFINDILEINRLESDKVLIEKINFNLTELSGNITASFKEFINENNINF 454

Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
              ID S+  ++  D   + Q+++NLL+NA+KF+   G V  T+   S        Y  I
Sbjct: 455 HLNIDNSITYNLKGDPTKLSQILINLLNNAIKFS-KDGDVWFTIKKKSETENNVFLYFEI 513

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            DNG GI + +   +  SF QGS+ I     G GLGL I + I+   G Q  ++S+  +G
Sbjct: 514 SDNGIGIPKEKQDAIFDSFSQGSVEINRTYGGTGLGLSIVKKILEIMGSQIHLKSESGKG 573

Query: 466 VEVIAIL 472
                 L
Sbjct: 574 STFSFEL 580


>gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase
           [Pseudomonas fluorescens Pf0-1]
          Length = 936

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/429 (23%), Positives = 161/429 (37%), Gaps = 32/429 (7%)

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
            +   +   P         LA  +    L +++ +  I           L+  ++     
Sbjct: 287 LLAVLWALWPQLLGALAFCLASISLVWLLIRRLEHRFITPTLQR--IQALVESELFSRDV 344

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALS-ISALSNFMLPYAVFLSFFPVVVALSTQAI 179
                +        +   + ++      L             A F    P          
Sbjct: 345 IQTAPVALCVLRRSDARVVLENTLARHWLGECGQQLGPGWIRAAFADKSPC--------- 395

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
                    L     TA     Y++    +   + +   A  D  I+     ++  +  R
Sbjct: 396 ---------LTDYFETADGRHLYLSCAPTRYKGEDVLLCAFSD--ISARRQIEAALERAR 444

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + A+  N AK+ FLA+MSHE+RTPL  +LG  E++    +        K Y+  I  S  
Sbjct: 445 QSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDT----QQKSYLRAIEGSSA 500

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL LI ++LD+S+IEAG+  L  S  S++ + +E +      AQ K ++++   DP L 
Sbjct: 501 TLLQLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGYAAAAQSKGLQLYACFDPQLP 560

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEG 415
            S+  D   +RQ++ NLLSNAVKFT  G  V  V V    G    +   + D G GIA  
Sbjct: 561 DSLIGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVLSREGERVCVQWQVSDTGRGIAHD 620

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +   F Q          G GLGLPI   +     G   + S+   G      LP  
Sbjct: 621 DQAFIFEPFYQT-RGNSHVIAGTGLGLPICLRLTNLMNGTLRMVSEPGLGSSFSLTLPLE 679

Query: 476 RVLNFIPED 484
           +     P D
Sbjct: 680 QRSGNTPPD 688


>gi|53711679|ref|YP_097671.1| C-terminal part of two-component system sensor histidine
           kinase/response regulator hybrid [Bacteroides fragilis
           YCH46]
 gi|52214544|dbj|BAD47137.1| C-terminal part of two-component system sensor histidine
           kinase/response regulator hybrid [Bacteroides fragilis
           YCH46]
          Length = 549

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 4/239 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++  EE N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I + 
Sbjct: 9   EKEHIEEMNQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKH 65

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q +  LI+E+LD  + +    +L  S  SL   + E  +     A +K+I    K+   
Sbjct: 66  AQQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQ 125

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+W D+  MR+V+ NLLSNA K     G + +    T  +   I++KD+G GI++ E 
Sbjct: 126 DISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQ-VVIAVKDSGNGISKEEQ 184

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F Q     K+   G G+GL + +SI+  H G   + S+L EG   I  LP  R
Sbjct: 185 ERIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPKNR 243


>gi|301309905|ref|ZP_07215844.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831479|gb|EFK62110.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 508

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + ++ AEE +  KS F+A+MSHE+RTPLNAI+GFS ++              EY+  I  
Sbjct: 276 QAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEEKK----EYLRIIES 331

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LI +ILD+S+I++G+ E   + + L +I         LR     +++  + D 
Sbjct: 332 SNEFLLQLIGDILDISKIKSGKMEFIYTTLRLSEIFAPQQQAFALRVA-PGVKVIFESDG 390

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +   + +++  + QV+ N LSNAVKFT+  G +      T     Y+ + D G GI++  
Sbjct: 391 NDYCIVSEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTDDG-IYVYVTDTGMGISKES 448

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++   F +      S +QG GLGL I ++I+    G+  + S+  +G      +P
Sbjct: 449 QASIFNRFVKL----NSFKQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 501


>gi|300867078|ref|ZP_07111745.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334909|emb|CBN56911.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1214

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 26/270 (9%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E      +   K A+  + N  K  FLA +SHEL+TPL A+LG S +++   +G L N+ 
Sbjct: 397 EEQLVAKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDRAIGEL-NDR 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y   IH+SG+HL+ ++N+ILDL+R+E G+ EL    + +  +        +L  Q++
Sbjct: 456 QARYAKLIHQSGRHLMTVVNDILDLTRMETGQMELIVEPVQIAAVCDRAFEGAKLLQQQE 515

Query: 347 N----------------------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           +                      I+   +I+  L+ + ADE  +RQ+++NLLSNA+KFTA
Sbjct: 516 DKPTAARDDPTNRDSTSGKSDSPIDFTLEIESGLAHIVADELRLRQMLVNLLSNALKFTA 575

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G  + + V          ++ D G GI   +   +   F Q    +    QG GLGL +
Sbjct: 576 PGAAIGLKVNHWE-GWIAFTVWDTGIGIPADKQHLIFQKFQQLESPLTRRFQGTGLGLVL 634

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q +   HGG     S   +G +   +LP 
Sbjct: 635 TQRLARLHGGDVSFISSEGQGSQFTLLLPP 664


>gi|47564388|ref|ZP_00235433.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47558540|gb|EAL16863.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 458

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 163 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 223 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERN 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 276 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +      +  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 336 AVEFDVPD--IIIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELES-SVMISISDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTV 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 QVELPK 458


>gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
          Length = 1230

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTP+NAI+GF++++    + P      + ++  +  S + LL L+N+IL
Sbjct: 658 SSFLANMSHEIRTPMNAIIGFTDLLLETPLSP----DQRRHLSTVQHSSRSLLGLLNDIL 713

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368
           D ++++ G  EL +   SL ++  + +   +L A+ K +++      ++   +  D   +
Sbjct: 714 DTAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRL 773

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QV+ NLL NAVKFT   G V + V         +++KD G GIA   +  +   F Q  
Sbjct: 774 QQVLTNLLGNAVKFTQQ-GEVRLKVSGEP-GAMRLAVKDTGIGIAADRLEKIFEPFAQAD 831

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            ++     G GLG  I++ ++   GG+  + S   +G      LP  
Sbjct: 832 ASMSRRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELPLR 878


>gi|326798533|ref|YP_004316352.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
 gi|326549297|gb|ADZ77682.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
          Length = 369

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 128/255 (50%), Gaps = 8/255 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E+   + E++ A     E RK  E  N  K  F++  SHEL+TPL ++ G+ +++E    
Sbjct: 122 EQAQAMHEMQEALKQEIEHRKMLE--NK-KDEFISIASHELKTPLTSVRGYLQLLER-LP 177

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              NNE +K Y+G        L  LI+++LD+S+IE+G+ + +   +S+  ++   +  +
Sbjct: 178 EAKNNEKFKTYLGKTSAQLNKLRELIDDLLDISKIESGKMKFNFQPVSIEKLISNTLENV 237

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
                E   +   ++D     + ADE  + QV++N L+NA+K++     +++    T   
Sbjct: 238 SQMYPEHAFKRIGQVDS---IILADEMRLEQVLINYLTNAIKYSPNSKEIYLETALTEDN 294

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I ++D G GI   ++  +   F +   +     QG+G+GL I + I+A H G+  + 
Sbjct: 295 KIQIGVRDFGIGIPSDKLNHLFDKFYRVEES-SYKFQGLGMGLYICKEIIARHHGEHGVE 353

Query: 460 SKLREGVEVIAILPN 474
           S+L EG      LP 
Sbjct: 354 SRLNEGSFFYFRLPL 368


>gi|326318214|ref|YP_004235886.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375050|gb|ADX47319.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 1196

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 170/388 (43%), Gaps = 31/388 (7%)

Query: 110 LLVGQIAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
           +      + + W      L+    W      +     L++ ++    + F L Y      
Sbjct: 580 MCKPHAHLAVQWAGALRWLLPRSAWRLLDSGLGHFLLLMLVIAPLLAAVFGLFYHQETQV 639

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIA 226
             V        + S  +       +++  ++++  + +   K   +  + Q       IA
Sbjct: 640 LGVPGT-GAAPLRSGLLKAYLALLVISGIVAWWLVLAHKSRKVAQEESNRQTHLLQREIA 698

Query: 227 ELEVAKSLSDETRKRAEEE---------------------NLAKSRFLASMSHELRTPLN 265
                     E R+ AE+                      N AKSR+++++SHELRTPLN
Sbjct: 699 LHRQTDQALQEARRTAEQARGVAEEAREEAEQARRLADQANQAKSRYISAISHELRTPLN 758

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +ILG+++++  +   P      ++ +G I R G+HLL LI   LD++RIE+G+  L    
Sbjct: 759 SILGYAQLMGEDASVP---PHRRQAVGVIRRGGEHLLTLIEGTLDIARIESGKLTLQVRP 815

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTA 384
           +   D + E + M + +A+ K +         L  V   D+K +RQ+++NL+ NA+KFTA
Sbjct: 816 MRFADCLHEMVEMFEPQARAKGLAFRFDPQGVLPEVVRGDDKRVRQILINLIGNAIKFTA 875

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V + V   +     I I+D+GPG+ E E  ++   F +G+ + + A  G GLGL I
Sbjct: 876 A-GHVRLGV-RHARELALIEIEDSGPGLTEAERASIFEPFERGAASSQGAAPGAGLGLTI 933

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
           A+ +    GG+  + S    G      L
Sbjct: 934 AKMLTELMGGEMTVTSTPGAGALFRIRL 961


>gi|160899371|ref|YP_001564953.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364955|gb|ABX36568.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 976

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 9/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I   +  +   ++ RK AEE N  KS FLA+MSHE+RTPLNAILG  E++   +M   
Sbjct: 487 ADITAHKQVQRNLEDARKAAEEANQEKSSFLAAMSHEIRTPLNAILGNLEILGRSSM--- 543

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  +  +  I  S   LL L+N++LD S+IE+G+  +  ++  L  ++R+   + +  
Sbjct: 544 -SEEQQTRLATISSSSHSLLTLLNDVLDFSKIESGQMSVELTSFDLKSVIRQVAAIYKPL 602

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A E  IE    +D SL      D + ++Q++ NLLSN++KFT   G++ V          
Sbjct: 603 AAESGIEFSLILDDSLKDGYIGDGERIKQILNNLLSNSLKFTKA-GKIDVFAS-DRAGEL 660

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I + D G GI   +   +  +F Q    I +   G GLGL + Q +    GG+    S 
Sbjct: 661 KIKVSDTGIGIHPSQHAFIFDAFKQAGSDIAAEFGGTGLGLTLCQRMAHLMGGEIRFFSV 720

Query: 462 LREGVEVIAILPN--TRVLNFI 481
             +G      +P    R +   
Sbjct: 721 PGKGSIFELTVPAYHARPVPAS 742


>gi|160935994|ref|ZP_02083367.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440804|gb|EDP18528.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC
           BAA-613]
          Length = 886

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 10/250 (4%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                 + +  +  N+AK++FL+SMSH++RTP+NAI+G +E+ + +     N    +  +
Sbjct: 354 NKRLRRSIEETQNANMAKTKFLSSMSHDIRTPMNAIIGMTEIAKKQI---HNPAQVQYCL 410

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  SG HLL L+N++LD+S++E+G+  L     SL +     I +++ + QEK ++  
Sbjct: 411 DKITLSGNHLLTLVNDVLDISQVESGKMALHPVVFSLPECCANLINIIKSQIQEKELQFD 470

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYIS-- 404
             +       ++ADE  M Q+ +NLL+NAVK+T  GG++ V               ++  
Sbjct: 471 VHVRNLKYEYLYADELRMNQIFINLLTNAVKYTNPGGKIIVEFEEALQPGDKGNVVLTYT 530

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           ++D G G++   +  +  +F +   +      G GLGL I + ++    G     S+  +
Sbjct: 531 VQDTGIGMSSDFMRDMYQTFTRAVDSRIDKVHGSGLGLAITKQMVELMNGTINCESEPGK 590

Query: 465 GVEVIAILPN 474
           G   I  LP 
Sbjct: 591 GTRFIVALPL 600


>gi|126660024|ref|ZP_01731146.1| drug sensory protein A [Cyanothece sp. CCY0110]
 gi|126618702|gb|EAZ89449.1| drug sensory protein A [Cyanothece sp. CCY0110]
          Length = 678

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L     KE++   +     L +
Sbjct: 413 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTETERKEFLETANHETDRLTH 471

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ +       + L  ++ + +   QL A++K + + ++++ +L  V  
Sbjct: 472 LVNDVLDLSRLESSK-TYHLDGVDLSQLIEQTLRTCQLNARDKELVLNKEVEANLPLVLG 530

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
               + QV+ NL+ NA+KFT  GG + +           +       + I D G GIA  
Sbjct: 531 HYDLLLQVMTNLVGNALKFTPPGGIIMIRAYHFKTKSKQFNDKSCVRVEISDTGIGIAAE 590

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+  H  Q  + S++  G      L
Sbjct: 591 DQAAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTFWFDL 646


>gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1648

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 16/341 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P  V         AL +          + L     +  +    +   L    +   + +
Sbjct: 272 APLRVGDLTQRFATALPSGPWHLPPQQAVILPVSPGSESAQTVVLVAALNPCRLFDDAYR 331

Query: 219 AEKDDLIAELEVA---KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE 272
           +  +    ++  A       +E R+RAE     + AK+ F +++SHE RTPL  +LG  E
Sbjct: 332 SFLNLAAGQIGAAIGYARAYEEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLE 391

Query: 273 -VIELETMGPLNNETY-------KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            ++    +    ++         +  I   HR+G  LL L+N +LD SRIEAGR ++   
Sbjct: 392 ELLAKPQLAAGGDQARLGSDIEDRALIEITHRNGLRLLKLVNALLDFSRIEAGRMQIHMQ 451

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              +     E   + Q   +   + +  +I  +      D +   +V++NLLSNA KFT 
Sbjct: 452 PTDVASFTAELASLFQSAIEAAGLRLEVEIPAAPVVAQLDREMWEKVVMNLLSNAYKFTF 511

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + V V   +G G  +S+ D+G GIAE E+P +   F + + A   + +G G+GL +
Sbjct: 512 -FGTIRVAVRVLAGVGVEVSVTDSGIGIAEEEVPRLFERFHRVAGAPGRSVEGSGIGLAM 570

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            Q ++  HGG   + S   EG      LP+  V    P++ 
Sbjct: 571 VQELVKLHGGAVRVDSVPGEGACFTVSLPHGAV-PVQPDEE 610



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 110/325 (33%), Gaps = 35/325 (10%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237
            ++  H+ ++   G+     + F  I            L     +   +     A   + E
Sbjct: 1052 VVRTHLAELRRTGVPVRYENRFRRIDGTWRWVAWTLALDPDTARIHGVGRDVTADKETTE 1111

Query: 238  TRKRAEEENLA--KSR----FLASMSHELRTPLNAILGFSEVIELETMGPLNNETY-KEY 290
              + AEE      K          ++H+    L  I G  +++  +  G    E   +  
Sbjct: 1112 ALRHAEEALRMAQKMEAIGKLTGGVAHDFNNLLQVIGGNLQLLAKDVAGSEKPEQRVRNA 1171

Query: 291  IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            +  + R      NL +++L   R    R  L+   ++L   VR    ML+ RA    +EI
Sbjct: 1172 LAGVARGA----NLASQLLAFGR----RQPLAPKVVNLGRFVRGLDDMLR-RALGDGVEI 1222

Query: 351  FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------------WT 396
               +   L +   D   +   +LNL  NA       G++ +  G               T
Sbjct: 1223 ETIVSGGLWNTLVDPFQVENALLNLAINARDAMNGHGKLTIEAGNAALDDAYAKRNAEVT 1282

Query: 397  SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             G+   +++ D G G+       V   F       K   QG GLGL +    +   GG  
Sbjct: 1283 PGQYVMLAVTDTGAGMPPEVRERVFEPFF----TTKPEGQGTGLGLSMVYGFVKQSGGHV 1338

Query: 457  LIRSKLREGVEVIAILPNTRVLNFI 481
             I S+   G  +   LP  R    +
Sbjct: 1339 KIYSEEGHGTTIRIYLPRVRQQEDL 1363


>gi|229144601|ref|ZP_04273003.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
 gi|228638841|gb|EEK95269.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
          Length = 351

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 151/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 10  FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 69

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 70  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 125

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 126 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 183 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 240

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 241 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFERFYK 299

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 300 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|223936067|ref|ZP_03627981.1| histidine kinase [bacterium Ellin514]
 gi|223895289|gb|EEF61736.1| histidine kinase [bacterium Ellin514]
          Length = 552

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 3/241 (1%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            + +  +R    +  KS F++S+SHELR P+ ++   +E +E   +     +   EY   
Sbjct: 305 AARQAFRRQLHLSEMKSNFVSSVSHELRAPIASVRLMAEGLERGKISE--PKKQHEYFHF 362

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I +  + L +LI  +LD SRIE GR +       L+ +  + + ++Q  A+E+ I I  +
Sbjct: 363 IVQECRRLSSLIENVLDFSRIEQGRKQYEFDPTDLVKLAEQTVKLMQAYAEEQRIRIELE 422

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +     SV  D K M+Q ++NL+ NAVK +  G  V V + + +     + ++D G GI 
Sbjct: 423 VKGKARSVDLDGKAMQQALVNLIDNAVKHSPKGSVVKVGLEF-AENEVALWVEDQGEGIP 481

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             E   +   F +    ++   QGVG+GL I + I+  HGG+ L+RS++ +G      LP
Sbjct: 482 AAEHQKIFERFYRLGSELRRETQGVGIGLSIVKHIVEGHGGKVLVRSEVGQGSRFTIELP 541

Query: 474 N 474
            
Sbjct: 542 R 542


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 22/250 (8%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E      + F++ +SHELRTPL + +G  +++  E +G L NE  ++ +     +
Sbjct: 268 ERKRLE------NEFISLVSHELRTPLTSTMGALDLLGSEQLGTL-NEQGQKVLSIATTN 320

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L+ L+N+ILDL R+++G+    +   +  D++      +Q  A +  +++     P 
Sbjct: 321 TERLIRLVNDILDLERMKSGKIFTRKMKYNAADLLTTATEAMQAMADQLQVKLIIN--PV 378

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-------------IS 404
              +WAD   + Q + NLLSNA+KF+  G  V+++   +  +G               I+
Sbjct: 379 EVELWADPDRLLQTLTNLLSNAIKFSEPGDTVYISATLSESQGVEPKENEPLLPKYLLIT 438

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKD G GI E ++  +   F Q   +    + G GLGL I + I+  H G+  ++S L E
Sbjct: 439 IKDQGRGIPEDKLQIIFERFQQVDASDSRNKGGTGLGLAICRDIIQQHDGKIWVQSTLGE 498

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 499 GSTFYVLLPL 508


>gi|73661331|ref|YP_300112.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123734265|sp|Q4A159|WALK_STAS1 RecName: Full=Sensor protein kinase walK
 gi|72493846|dbj|BAE17167.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 610

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 371 QQVERERREFVANVSHELRTPLTSMNSYIEALESGAW--KDGELAPQFLSVTREETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      +++        
Sbjct: 429 RLVNDLLQLSKMDNESEQITKEIVDFNMFINKIINRHEMSAKDT--TFVREVPTETIFTE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I +KDNG GI   ++  + 
Sbjct: 487 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRVKDNGIGIPINKVDKIF 546

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  
Sbjct: 547 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 600


>gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus nematophila
           ATCC 19061]
          Length = 930

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 7/264 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ N AKS FLA++SHELRTPL  I+G  E+I+   + P +      
Sbjct: 430 KMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELIQSHLLPPEST----R 485

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   I        +K + 
Sbjct: 486 LLATMNNSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKEVISHVISNYLPLIAKKALG 545

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P++   +  D   ++Q+I NLL+NA+KFTA  G V + +  +     Y SIKD 
Sbjct: 546 LYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTAS-GCVVIEI-VSKHGYLYFSIKDT 603

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +     +   F Q S   +S+ QG GLGL I + ++    G     S+   G   
Sbjct: 604 GLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLINLMDGDIEFISQKYVGSIF 663

Query: 469 IAILPNTRVLNFIPEDNHESTQYK 492
              +P   V     + + +  Q K
Sbjct: 664 SIRIPLYGVKFHTKKISSQRNQKK 687


>gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869]
          Length = 785

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 155/351 (44%), Gaps = 18/351 (5%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFT 201
            + +++   F      FL      + +    I +    D  L      A  L T      
Sbjct: 9   VIELASFQPFSSVQLAFLDQLLESLGIVVATIEATMRTDELLRESQSLAEELQTQQEELQ 68

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
                L +   ++ + + E +    E+E AK   ++  ++    +  KS FLA+MSHELR
Sbjct: 69  QTNEQLEEKARQLTAQKVEVERKNQEVESAKRELEDKAEQLALTSRYKSEFLANMSHELR 128

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN++L  S  +   + G L+ E   ++   IH++G  LL LINEILDL++IE+G   +
Sbjct: 129 TPLNSLLILSRQLGENSAGNLD-ERQVQFAQTIHQAGSDLLTLINEILDLAKIESGTMHV 187

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
           + + +   DI        +  A E+ +    +I   +   +  DE  ++Q++ NLLSNA 
Sbjct: 188 NPAELPFRDIKEYVERSFEHVADERGLWFRVEIAADVPETIETDEMRLKQILRNLLSNAF 247

Query: 381 KFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           KFT  GG V + +   +              I+++D G GI+  +   +  +F QG    
Sbjct: 248 KFTEHGG-VTMRMRPATDPTRTTLLGADAVAIAVEDTGIGISPEQQRLIFEAFQQGDGGT 306

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                G GLGL I++ +    GG   + S++ +G      LP        P
Sbjct: 307 ARRYGGTGLGLSISRELARLLGGWVEVGSEMGKGSTFTLYLPRRFTAANQP 357


>gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
 gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
          Length = 514

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 19/280 (6%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS-----RFLASMSHELRT 262
            K     L  Q + +  I   ++ +    +   ++E+E   KS     +FLA++SH++RT
Sbjct: 86  NKDFKATLEKQQDNNYFIILNDITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRT 145

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+  I+G  E++    +    ++  KEYI  I+ S + LL L+N+ILD S++E G  +  
Sbjct: 146 PIQTIIGMMELLRTTKL----DQEQKEYIRQINFSAEILLELVNDILDFSKLEVGSMQFE 201

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
                L+ ++   I  + +   +K +EI   + P+L      D   ++Q++LNL+ NAVK
Sbjct: 202 NIPFDLVSLMESSIDFIAIEGHKKGLEILLNMSPALNPYFIGDPSRLKQILLNLMKNAVK 261

Query: 382 FTAIGGRVHVTVGW----TSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           FT   G V V V                Y  I D G GI + +   + T F Q   ++  
Sbjct: 262 FTEK-GSVTVDVFEAELPDKDGKAMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSR 320

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              G GLGL I+++I+    G+  ++     G      LP
Sbjct: 321 RFGGTGLGLAISKNIIKMLNGEIGVKDNKPHGSIFWFKLP 360


>gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1099

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 8/229 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA MSHELRTPLNAILGF++++E +T+        KE +  I+RSG+HLL LIN++L
Sbjct: 638 SAFLAHMSHELRTPLNAILGFAQLMERDTLLTTA---QKESLSIINRSGEHLLGLINDVL 694

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           ++S+IEAGR  L ++   L  +++    M ++RA  K + +   + PSL   + +DE  +
Sbjct: 695 EMSKIEAGRIVLHKAQFDLHRLLQTLQEMFRVRATAKGLVLTMNLSPSLPQLIISDEGKL 754

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           RQV++NLLSNAVKFT + G + +T  +        +  ++D G GIA  E   +   F Q
Sbjct: 755 RQVLINLLSNAVKFTDV-GHITLTANYADDPDPRLWFQVEDTGRGIAAAEQHHLFEPFVQ 813

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +     A++G GLGL I+   +   GG+  + S++  G      LP  
Sbjct: 814 TTTGAN-AQEGTGLGLTISHQFVQLLGGELRVESEVNRGSTFSFDLPVE 861


>gi|332703496|ref|ZP_08423584.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553645|gb|EGJ50689.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 715

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 13/265 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E + A+    + R++AE  + AKS+FLA+MSHELRTPLN I+G  E++    +   + 
Sbjct: 312 ITERKKAEQELVQARQKAEVADRAKSQFLANMSHELRTPLNGIVGMIELL----LISRSE 367

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++++     S   LL L+N++L+LS +E  R+E       L + V        +RA+
Sbjct: 368 PEERKFLELARASAHDLLGLVNDLLELSTLERKRFEPISRPFGLAEAVDSVARFFSVRAR 427

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K ++    +DP+LS     DE  ++QV++NLL NAVKFT   G V + V          
Sbjct: 428 LKGLDFTACVDPALSGQFLGDELRLKQVLINLLDNAVKFT-ESGSVRLEVRLAEKDRQDG 486

Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   + D G GI   ++  V   F  G   +     G GLGL IA+ I++  GG+ 
Sbjct: 487 AALPVTFLVSDTGIGIPNDKLAEVFEGFNLGENYLTKRYGGAGLGLAIAKHIVSKLGGRI 546

Query: 457 LIRSKLREGVEVIAILPNTRVLNFI 481
              S +  G      +   R +   
Sbjct: 547 EAESSVGRGSLFHFTISLPRAIQPA 571


>gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
 gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
          Length = 400

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    +++ +        +      R + EE +  KS FLA+MSHE+RTPLNAI+GFS
Sbjct: 146 LCMCRDISQQWEAEQTNAQQQKELKAARIKVEESDRLKSAFLANMSHEIRTPLNAIVGFS 205

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           ++I        + E   +Y   I R+ + LLNL N+ILDL+ +EA   + +   I LIDI
Sbjct: 206 KLI----TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDI 261

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +       +  +  +++      +      D   + Q+I NLLSNA KFT   G +H 
Sbjct: 262 CLQLEQQFCHK-TQNGVKLILDDVNTDMYTSGDWNRIIQIISNLLSNATKFTPK-GEIHF 319

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                        +KD+G GI    I T+   FG+         QG GLGL + + ++  
Sbjct: 320 GY-REKEDFVEFYVKDSGIGIPAARIATIFRRFGKV----NDFVQGTGLGLTLCRMLVEK 374

Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476
            GG+  +RS+  +G      LP  R
Sbjct: 375 MGGRIWLRSQEGQGSRFYFTLPLVR 399


>gi|85543001|sp|P0C0F6|RPFC_XANCP RecName: Full=Sensory/regulatory protein rpfC
          Length = 677

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 42/380 (11%)

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
              V     L+G +    C   +  ++     P          + I   +   SN++   
Sbjct: 24  RPQVSHTRRLIGMLLDYTCTGAIMAIQ---GEPASPLYAVCMWVTIGNGLRYGSNYLRAA 80

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
               S   +   L +    +   L   L   L     +F  +   + +            
Sbjct: 81  TAMGSLCFLGAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR------------ 128

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                             + A   N AKSRFLA+MSHE RTPLN + G +EV+    +  
Sbjct: 129 ----------------AVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRL-- 170

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL +++    ++LQ 
Sbjct: 171 --DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQP 228

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +A+ + +E   ++   +  +   D   +RQV+LNL+ NAVKFT   G V + V   SG  
Sbjct: 229 QARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFT-EHGHVLLRVTRVSGSA 287

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    ++D G G+     P +  +F Q  + +    +G GLG  IA+ ++   GG 
Sbjct: 288 EDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGS 347

Query: 456 FLIRSKLREGVEVIAILPNT 475
              +     G      LP  
Sbjct: 348 IGFKENQPSGSVFWFELPMA 367


>gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 1056

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 26/385 (6%)

Query: 113 GQIAIGLCWTLL--TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
            QIA GL  +     L+ P T     + + +   +  A +  A    +L          +
Sbjct: 207 LQIASGLGQSACQELLLAPVTADGRVIGLVELGRVSDAQTSGAREQELLVRCGENIGVAL 266

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
             AL    ++S+       +  L T           L + +  +   Q++ +   AELE 
Sbjct: 267 RTALLRAQLVSLLEETQRQSEELQTQQEELRVANEELEEQSRSLQQSQSDLEQQQAELEQ 326

Query: 231 AKSLSDETRKRAEE---------------------ENLAKSRFLASMSHELRTPLNAILG 269
                +E  +  E                       +  KS FLA+MSHELRTPLN+ L 
Sbjct: 327 TNVQLEERTQALEAQKQALLIAQGQLVRNGNELATASRYKSEFLANMSHELRTPLNSALI 386

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S+++     G L+ +  K Y   I  S   LL LIN+ILDLS+IEAG  EL++  ++  
Sbjct: 387 LSKLLADNKDGTLSPDQVK-YAQAILSSNNDLLALINDILDLSKIEAGHVELADETVATS 445

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +++      +  A++K + +    D    + +  D + ++Q++ NLL+NA+KFT   G 
Sbjct: 446 SVLQRLRDTFEPLARQKGLTLEIGADAGAPTQLVVDNQRLQQILKNLLANAIKFTER-GT 504

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + +   +       + D G GIA  +   +  +F Q   + +    G GLGL I++ +
Sbjct: 505 VSLAIQAGAPGRVLFKVNDTGIGIAREQTEVIFEAFRQADGSTRRRYGGTGLGLSISRDL 564

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
               GG   + S+   G      +P
Sbjct: 565 AQRMGGSISVDSEPGRGSCFTLEVP 589


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 9/292 (3%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            ++I LA +    +         + +           +D L  ++          R  AE
Sbjct: 409 PVEIGLAPLTTGEMRQTIASVIDITQRKAMQAELTQHRDRLEEQVAARTVELVNARNEAE 468

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                K++FLA+MSHE+RTPLNAI G + +I  + +    +E     +  + R+  HLL+
Sbjct: 469 RLAQVKAQFLANMSHEIRTPLNAIGGMAHLIRRQGL----SEKQTRQMDSLERASAHLLS 524

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +IN IL+LS+I+AG   L+   +S+  +V E I + + +A +K+I +  ++     +   
Sbjct: 525 VINSILELSKIDAGALHLASEPVSVTSLVHEVIDLQRQQATDKHITLRCELALRTDAWVG 584

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPT 419
           D   +RQ +LN +SNA+KFT   G V + V               ++D G GI+   +P 
Sbjct: 585 DPTRLRQALLNYVSNAIKFTGS-GAVLIRVDPVDEDAASALIRFEVQDTGIGISPDAMPR 643

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +  +F Q   +      G GLGL I + +    GG     S    G      
Sbjct: 644 LFKAFEQADNSHTRQYGGTGLGLAITRMVARQMGGDSGATSLPGVGSTFWFT 695


>gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 585

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL +I G++E +         ++  +E++  I R+ Q + 
Sbjct: 342 ERVEKTRRDFIANVSHELRTPLTSIQGYAETLSEAF---REDDPAREFVEIIRRNAQRMY 398

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L  ++L L+R+E+G   +   A++  +++ E  +  Q   +   IE+   ++ +   V 
Sbjct: 399 RLTEDLLTLARVESGEQRMEFHAVTPGELLAEAELNFQDHHRGAGIELSV-MNTAQGEVE 457

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   +RQV  NLL NAVK+   GG++ +             I+D GPGI    +  +  
Sbjct: 458 VDRDALRQVFSNLLDNAVKYGGTGGKILLG-SRDVEDRVLFYIRDFGPGIPSEHLARLFE 516

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            F +   A      G GLGL IA+ I+  HGG+    S+L  G     ILP  ++L
Sbjct: 517 RFYRVDKARSVQSGGTGLGLAIAKHIVRAHGGEIRAESELNHGAVFSFILPRKQLL 572


>gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
 gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
          Length = 843

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I++ +VA+ +  E R RAE  + AKS+FLA MSHE+RTPL  I+G  ++++   +   
Sbjct: 329 RDISDRKVAEKILIEARDRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLLKATNL--- 385

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++    Y+     SG+ +L  INE LD++RIE G +ELS    +L D+ R  + +L+  
Sbjct: 386 -SKKQDHYVQIATSSGEVMLEHINEALDITRIEGGAFELSPQEFNLPDLARSLVEVLKPL 444

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG-R 399
           A EK + +  +ID ++ +    D   +RQ++ NLL N++KFT  G  +  ++    +   
Sbjct: 445 ANEKELSLELQIDDNIKAYFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISCSHEADVS 504

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +I D G GIA      +   F   S   +   +G GLGL I++ I    GG  ++ 
Sbjct: 505 RLKFTITDTGLGIAPENHEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQMGGDIIVE 564

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S + EG   I  LP  +V   
Sbjct: 565 SNINEGATFILNLPLKQVAKT 585


>gi|29348380|ref|NP_811883.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569248|ref|ZP_04846658.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29340284|gb|AAO78077.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251841267|gb|EES69348.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1346

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N  K RF  ++SHE RTPL  ILG  EV+    +G     T    I  I+++  H+ NL
Sbjct: 817  LNQVKLRFFTNISHEFRTPLTLILGQIEVLMQMDLGT----TVYNRIQRIYKNAWHMRNL 872

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I+E+LD  + E G  +L     +L+   R+  +     AQ+K I           SVW D
Sbjct: 873  ISELLDFRKQEQGYLKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFD 932

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               +++VI NLLSNA K+T+  G + V V   + +   +S+ D G GI    I  +   F
Sbjct: 933  PIQLQKVIFNLLSNAFKYTSNKGNITVEVRKVASQ-AVVSVCDTGIGIPVEHISKIFDRF 991

Query: 425  GQGSIAIKSA--EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q   A  S+    G G+GL +A+ IM  H G+  + S + EG + I  LP 
Sbjct: 992  YQTDNASSSSSFTLGTGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLPL 1043


>gi|329115712|ref|ZP_08244429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326906117|gb|EGE53031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 445

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 126/238 (52%), Gaps = 11/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK-EYIGDIHRSGQHL 301
           E+ N+    F+++ SHELRTP+ +I GF+E I+     P + E  K E++  I+     L
Sbjct: 214 EKLNM---DFISNASHELRTPVTSIKGFAETIKS---MPQDEEVLKKEFLDIIYNESLRL 267

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +++  +L LS++   + +L ++ I L + ++     L+ + Q+K++ +   ++ ++  +
Sbjct: 268 EHIVEHMLTLSKV--KKTQLQKTDIDLNEFLQYIGNSLKHQLQQKHLHLKYDLEANVI-I 324

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            +D+  + Q+ILNLLSNA+++T  GG + V    T      I +KD G GI++ EI  + 
Sbjct: 325 ESDKYLLSQIILNLLSNAIRYTEDGGDIMVITRETKDN-ITICVKDTGIGISQLEIERIF 383

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F + +        G GLGL I + +     G+  + S+L +G      LP++ +  
Sbjct: 384 ERFYRVNKGRSRQSGGTGLGLSIVKELSQILSGKISVSSQLGQGSIFTLTLPSSIISE 441


>gi|326424155|ref|NP_761988.2| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|319999539|gb|AAO11515.2| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1254

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 11/275 (4%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           ++ I   + +    +L+   +    I E    + L  E   +AE+   A+  FLA+MSHE
Sbjct: 626 YSRIPVKINRIERCVLTIAND----ITEERANQQLLIEANTKAEKAVQARQMFLATMSHE 681

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTP+  ++G  E+          ++     +  I  S ++L  L+N+ILD S++E+ + 
Sbjct: 682 LRTPIAGMMGLLEM----VTSKTEDKESLFLLDQISASAKNLNFLVNDILDFSKLESNQV 737

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSN 378
            +     S++  + E +    + A+ K +          + ++  D   + Q+I NLL+N
Sbjct: 738 VICNEETSILTALCESLRGHYVAARNKGLNFELDWPANDIKTINIDFLRLNQIINNLLTN 797

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT   G V V V   S R Q I + D G G+ + +   V   F Q   +I     G 
Sbjct: 798 AIKFTHK-GTVRVQVSLESERIQII-VADTGVGMTQEQKENVFLPFVQADNSITRKYGGT 855

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GLGL I   +++  GG   I S L  G E+   +P
Sbjct: 856 GLGLSIVHDLVSLMGGTIFINSTLGLGTEITVSMP 890


>gi|319952027|ref|YP_004163294.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319420687|gb|ADV47796.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 1344

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               ++ +          L         I Y + +     L  + E        E      
Sbjct: 772  VSYLIKIEPPFWLTYQALLLVFVLLISIGYLIRRDMKNRLRLKQELV-----TEKVN--- 823

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               R+R  + N  K RF  ++SHELRTPL  ILG ++ +  E     +++  K     IH
Sbjct: 824  ---RERDVKLNNEKLRFFTNISHELRTPLTLILGPAKQLLEEA-NENSSDYQKSRFNLIH 879

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            ++   LLNL+N++LD  + + G  +L  S   ++   +      +  A  KNIE+    +
Sbjct: 880  QNASRLLNLVNQVLDFRKAQTGELKLKVSKTDILLYTKNTFDSFKEFAYNKNIELNFNSE 939

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQYISIKDNGPGIA 413
                  W D     +++ NLLSNA+KFT   G V   + +   +     I + D+G GI 
Sbjct: 940  HETLFGWIDRDKYDKILYNLLSNAIKFTNKYGHVDVFIRLKGEASEVLVIEVSDDGIGIP 999

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                  +   F Q + + ++   G G+GL + +S++  H G   + S+  +G      +P
Sbjct: 1000 LKSQEKIFNRFYQATNSKENNT-GSGIGLSLVKSLVELHKGNIKVESEPNQGSVFTFEIP 1058

Query: 474  NTR 476
              R
Sbjct: 1059 INR 1061


>gi|20806987|ref|NP_622158.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515469|gb|AAM23762.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 468

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 5/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++  SHEL+TPL ++    E +        +   YKE + D++     +  L+
Sbjct: 239 DEERKRFVSDASHELKTPLASVKALIESLINSR--SQDIAFYKEILHDVNGEIDRMTRLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N++L+L+R++  +       + + +++ + I  L   A+ KN+ +       +     D 
Sbjct: 297 NDLLELARLDKIK-SPRIKRVEVSEVISDVIDSLAPLAESKNVNLTFNGKEKV-FAEVDP 354

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
               ++  N++ N +K+T  GG V V +        Y++I DNG GI+E  +P +   F 
Sbjct: 355 DRFYRMAYNIVENGIKYTHEGGNVLVGLDEDEDN-IYLAISDNGIGISEEVLPKIFDRFA 413

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +G  A      G GLGL IA+ I+  H G+  + SK+ EG     +LP  +
Sbjct: 414 RGDTARSKKNGGFGLGLAIAKEIIDMHEGKVTVESKVGEGTTFKIVLPKRK 464


>gi|305666165|ref|YP_003862452.1| sensor histidine kinase [Maribacter sp. HTCC2170]
 gi|88707663|gb|EAQ99904.1| sensor histidine kinase [Maribacter sp. HTCC2170]
          Length = 334

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 136/325 (41%), Gaps = 25/325 (7%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS--------------NV 212
              + +      I    +   +L   L + +     I   +++               N+
Sbjct: 1   MILLSLLWVFDTINWPLIGIFTLTVFLLSFVVLQIRIENFIYRRIKKIYDDVALLESKNL 60

Query: 213 KILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                  +   L  E+E      K   D  + R E     +  FL ++SHEL+TPL  + 
Sbjct: 61  TSGPVTTDMKTLTEEIEKFAHDKKIEIDTLKIREE----YRKDFLGNVSHELKTPLFTVQ 116

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+   +    M   N    K+Y+   ++  + L+ ++ ++  ++++E G   L      +
Sbjct: 117 GYILTLLDGAMDDKN--IRKKYLQRANKGVERLIYIVRDLDMITKLEVGDLNLELVEFDI 174

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           I++++    +L+++A +K I +   +D      V+AD + ++QV+ NLL N++K+    G
Sbjct: 175 IELIQNVFDLLEMKANKKKITLTFDMDYADSVPVYADREKIQQVLTNLLVNSIKYGQENG 234

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
              ++V         + + DNG GI+E  IP +   F +   +    E G GLGL I + 
Sbjct: 235 TTEISVENLIKNKVIVRVTDNGEGISEQHIPRLFERFYRVDKSGSRNEGGSGLGLAIVKH 294

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           I+  H  +  + S    G E    L
Sbjct: 295 IIEAHDEKIYVESAEGVGSEFSFTL 319


>gi|166712856|ref|ZP_02244063.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1185

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETRKR-AEEENLAKSRFLAS 255
             ++  +   L  S + +L            +   +  +  + R+R AE+ ++AKS FLA+
Sbjct: 755  PWWLSMAAQLAASVLCMLLLCLGIWARKKRVRRRQEWVLAQQRQRLAEQASIAKSHFLAT 814

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            + HE+RTP+  +LG SE++    +    N   + ++  I  +G HLL L+N+ LDL+RIE
Sbjct: 815  LGHEVRTPMTGVLGMSELLLATPL----NAKQRSHVDAIRNAGTHLLRLVNDALDLARIE 870

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            AG+ EL + A     + +E    +   A  + +    +   P+   V  D   +RQ+++N
Sbjct: 871  AGKLELMQQAFDPAQLAQELADFMHPIADARGLRFLYRNRLPTQLVVMGDATRVRQILIN 930

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-S 433
            LL NA+KF    G V +T+    G      ++D GPGI   +   +   F QG  A   S
Sbjct: 931  LLGNAIKFAER-GDVSLTLSQ-HGDTLRFKVRDAGPGIGLEQQKRLFQRFEQGEGARTSS 988

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I Q +     G+  +RS+L  G +    LP 
Sbjct: 989  RYGGSGLGLAICQELTVAMKGRIRVRSRLGVGTQFTVDLPL 1029


>gi|329113957|ref|ZP_08242724.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
 gi|326696704|gb|EGE48378.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
          Length = 1105

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 145/313 (46%), Gaps = 10/313 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                  ++  L   A  +    D +L  +    +     +                +  
Sbjct: 570 FVCLLICIIFVLGFLAHKTGLPFDGTLLTVFLACVIGAWLLVMAQEGRKTATRETLHQTR 629

Query: 223 DLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            L+ E+             R++AE  +LAK+R+++ +SHE+R+PLNAI+G+ ++++ +  
Sbjct: 630 LLMNEIRARMRMDQALQNAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQHDAR 689

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      ++ +  +  SG H+ ++++ +LD+SRIEAGR EL    I L   +     M+
Sbjct: 690 MP---PERQKTLSIMRESGDHITSILSGLLDISRIEAGRIELHSDTIPLAAFLESVAQMM 746

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + +AQ K ++ + K     S V  DE  +RQV+LNLLSNA+K+T   G V  +  W + +
Sbjct: 747 RPQAQAKGLKFYWKPQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQ-GSVTFSARWHA-Q 804

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               +++D G GIA  +   +   F +      +   G GLGL I + +    GG+    
Sbjct: 805 IAEFTVEDTGSGIAIEDQERIFDPFERA--TATANIPGTGLGLTITKLLTEVMGGELTFT 862

Query: 460 SKLREGVEVIAIL 472
           S + +G      L
Sbjct: 863 STMGKGSCFKLRL 875


>gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 885

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 8/247 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    +  + A   N AKS FL+ MSHE+RTP+NAI+G + +         +    ++ +
Sbjct: 357 QQTLSDALEAARGANAAKSNFLSHMSHEIRTPMNAIIGMTTIALSRL---DDRGRLEDCL 413

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I +S +HLL LIN++LD+S+IE GR  ++    +L   ++  + ++Q + QE+     
Sbjct: 414 GKIAQSSRHLLGLINDVLDMSKIERGRLSIAHEPFNLRLSLQGIVNLIQPQIQEQGQNFE 473

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406
             +       +  D   + Q+++N+LSNAVKFT  GG + + +               I+
Sbjct: 474 VSLSEVDEEELNGDGMRLNQILINILSNAVKFTPKGGSIRLDIRQLHKNHNNVRFRFIIR 533

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G G++E  I  +   F Q + A  S   G GLG+ I +++++  GG   ++SK  +G 
Sbjct: 534 DTGIGMSEEFISRLYMPFEQATAATASQFGGTGLGMAITKNLVSLLGGMISVKSKEGKGT 593

Query: 467 EVIAILP 473
           E    LP
Sbjct: 594 EFTVELP 600


>gi|296876106|ref|ZP_06900160.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
 gi|296432817|gb|EFH18610.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
          Length = 450

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDD---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSS 360
            ++L LSRI+    +L     +    +   +        Q +   K  E+ ++   +   
Sbjct: 263 TDLLSLSRIDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIW 322

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+L+NA+K++  GG++ V +  T  +   ISI D G GI + ++P +
Sbjct: 323 VEIDTDKMTQVIDNILNNAIKYSPDGGKIKVGMRTTDAQ-LIISISDEGLGIPKKDLPRI 381

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 382 FDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 511

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R +A+E +  KS FLA+MSHE+RTPLNAI+GFS +I    +  L
Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVD-L 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  ++Y   I ++  +LL L++++LDLS IE+       +   L  ++ E     + R
Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENR 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
             +  ++    +      +  D   +RQVI +LL NA KFT   G + +    +      
Sbjct: 380 IPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVK-GHIDIGYALSDHGEKI 437

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G GI   +   V   F +    I S  QG GLGL + ++I+   GG   + S+
Sbjct: 438 YVFVADTGCGIPSDQYKKVFERFYK----INSFVQGAGLGLSVCKTIVEGLGGTINVYSQ 493

Query: 462 LREGVEVIAILPNTR 476
           L+EG     ILP  R
Sbjct: 494 LKEGSRFSVILPLNR 508


>gi|284054061|ref|ZP_06384271.1| Cache sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 256

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 10/226 (4%)

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAI+G+SE++  E       +   + +  I+ +G++LL LIN+ILD+S+IEAG
Sbjct: 1   HELRTPLNAIIGYSEILLEEAEELGYEDIVPD-LERIYTAGKNLLTLINDILDISKIEAG 59

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           R +L   A  +  ++   +   Q    + N  +      ++  ++AD   +RQ++LNLLS
Sbjct: 60  RMDLFVEAFDVSGLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLS 119

Query: 378 NAVKFTAIGGRVHVTVGW--------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NA KFT   G++ + V           SG      + D G G++  +   +   F QG  
Sbjct: 120 NAAKFT-TDGKIKIEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDA 178

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +      G GLGL I+       GG   ++S L EG     ++P  
Sbjct: 179 STTRRYGGTGLGLAISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTR 224


>gi|240140253|ref|YP_002964731.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens AM1]
 gi|240010228|gb|ACS41454.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens AM1]
          Length = 914

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 93/322 (28%), Positives = 152/322 (47%), Gaps = 9/322 (2%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++     +A +   +   H              +        L   N +  +       L
Sbjct: 189 VTRPLAALARTMDGVRLGHDYSRRAEAGSGEVGALAESFNDLLRAVNERDRAIARYNAGL 248

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+ +      E ++ A+E N AKS FLA+MSHE+RTP+N +L  +E++    +     
Sbjct: 249 EEEIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----P 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I RSGQ LL +IN+ILD +++EAGR E+    +S  D+    + +   RA+
Sbjct: 305 PRQQRYAKVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERAR 364

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400
              +++  +ID  +   +  D   + QV+ N +SNA+KFTA  G V V +     +SGR 
Sbjct: 365 SAGLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTAT-GHVLVRMEMEHESSGRV 423

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I++ D G GI +  +  + T+F Q   +I     G GLGL IA+ ++A  GG+  + S
Sbjct: 424 LRIAVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVES 483

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +L EG    A +P        P
Sbjct: 484 RLGEGSTFWARIPVAGAEGAEP 505


>gi|228951141|ref|ZP_04113257.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808551|gb|EEM55054.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 463

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKES---TPSEQRMRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERCIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  H G   + S++  G   I  LP
Sbjct: 409 DKARTRSTGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454


>gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 846

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A S +   R  AE  + AK  FLA MSHE+RTPLN ++G +E++         +   +E
Sbjct: 334 RANSRAINAR--AE--SQAKGLFLARMSHEIRTPLNGVIGLAELLRET----DPSPRQQE 385

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           YI  I  +G+ L  LIN++LD ++IEAG+ EL E    L  ++ EC+ M  L A +    
Sbjct: 386 YISLIDSAGRTLTALINDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTL 445

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
           +   +DP   S V  D   +RQ+++NL+ NAVKFT  G  V   V    G        ++
Sbjct: 446 VILDVDPHTPSDVVGDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPLFTFAV 505

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+ + E   +   F Q S        G GLGL I++ ++   GG+  + S    G
Sbjct: 506 TDTGIGLTQDEQTQLFQRFTQASANTARRYGGTGLGLSISRELVGLMGGEIHVHSAPGLG 565

Query: 466 VEVIAILPNTRVLNFIP 482
                 +      + IP
Sbjct: 566 SRFSFSIQMASEQDEIP 582


>gi|168033977|ref|XP_001769490.1| ETR2 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|162679201|gb|EDQ65651.1| ETR2 ethylene receptor [Physcomitrella patens subsp. patens]
          Length = 753

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 147/373 (39%), Gaps = 44/373 (11%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I +++  ++   + AL        +  +   V + L   +       ++  A      L 
Sbjct: 224 IIQTSEAIVIPPVCALGKASNHRVLAGAMAAVRLPLLYVSNFKGGTPEVVSASYAILVLV 283

Query: 199 FFTYITYHLFKSNVKILSCQAEKDD--------LIAELEVAKSLSDE------TRKRAEE 244
                        ++++   A++          L        +L D+       R+ AE 
Sbjct: 284 LPGETGRVWTAHEIEMVEVVADQVAVALSHAAVLEDSQRTRDALVDQNKKLQAARQEAET 343

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              A++ FLA M+HE+RTP++AI+  S +++   +        +  +  + +S   L  L
Sbjct: 344 AIRARNDFLAVMNHEMRTPMHAIIALSSLLQEGKLTV----DQRSMVDTVVKSSSLLSTL 399

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           IN++LD SR+E G   L      L  ++RE   + +  A+ K ++ F  I+  +   V  
Sbjct: 400 INDVLDFSRLEDGSLSLEMRPFELPTVLREAENLAKPMAKGKGLDFFFDINMDVPQCVIG 459

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------------------GRGQYIS 404
           DEK + Q+ LN++ NAVKFT   G V V+V                           YI 
Sbjct: 460 DEKRLLQITLNIIGNAVKFT-RLGFVSVSVSLEKYDASIRRDPRNPSWRPIPCDGFVYIR 518

Query: 405 --IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK- 461
             +KD G G+ E +IP +   F Q          G GLGL I +  +    G   I S+ 
Sbjct: 519 IVVKDTGLGVRENDIPRLFNKFVQADSTTTRQYGGTGLGLAICKKFVQLMNGHIWIESEG 578

Query: 462 LREGV--EVIAIL 472
           +  G     I  L
Sbjct: 579 INRGSVVTFIVRL 591


>gi|163755747|ref|ZP_02162865.1| multi-sensor hybrid histidine kinase [Kordia algicida OT-1]
 gi|161324268|gb|EDP95599.1| multi-sensor hybrid histidine kinase [Kordia algicida OT-1]
          Length = 687

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 134/272 (49%), Gaps = 14/272 (5%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              S     +  AE+   AK++FL++++HELRTPL A+ G + ++  E      +E+ KE
Sbjct: 301 KKNSELQLAKDNAEKAMKAKAQFLSTVTHELRTPLYAVTGLTHLLLEE----NPSESQKE 356

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  +  SG +LL  IN+IL +++IEA +  + ++ ++L  I+ + +  L   ++E N +
Sbjct: 357 HLKSLKFSGDYLLTFINDILQVNKIEARKLAVEKAPLNLKKILNDVVNSLTQTSKENNNK 416

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404
           I   ID  +   +  D   M QV +NL+SNA+KFT   G V ++                
Sbjct: 417 IVLNIDKGIPEKLVGDYLKMSQVFINLISNALKFT-KNGVVEISAKILEEDETQQHIQFE 475

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           IKDNG GI++     +  SF QGS+ I     G GLGL I +S++        + SKL E
Sbjct: 476 IKDNGIGISQAMQENIFDSFSQGSVQINRKYGGTGLGLTIVKSLLELLESDIQLESKLGE 535

Query: 465 GVEVIAILPNTRVLNF----IPEDNHESTQYK 492
           G      L   ++           N E T  K
Sbjct: 536 GSTFRFPLILEKLEPETANTTEAPNEEKTDLK 567


>gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
 gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
          Length = 511

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R +A+E +  KS FLA+MSHE+RTPLNAI+GFS +I    +  L
Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVD-L 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  ++Y   I ++  +LL L++++LDLS IE+       +   L  ++ E     + R
Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENR 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
             +  ++    +      +  D   +RQVI +LL NA KFT   G + +    +      
Sbjct: 380 IPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVK-GHIDIGYALSDHGEKI 437

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G GI   +   V   F +    I S  QG GLGL + ++I+   GG   + S+
Sbjct: 438 YVFVADTGCGIPSDQYKKVFERFYK----INSFVQGAGLGLSVCKTIVEGLGGTINVYSQ 493

Query: 462 LREGVEVIAILPNTR 476
           L+EG     ILP  R
Sbjct: 494 LKEGSRFSVILPLNR 508


>gi|75762529|ref|ZP_00742387.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489992|gb|EAO53350.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 282

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L 
Sbjct: 56  EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLS 112

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD+
Sbjct: 113 QNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHVTADQ 170

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + M QV +NL+ N++KFT  GG + + +         + I D+G GI+E +   +   F 
Sbjct: 171 ESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRICDSGIGISEEQKQHIFERFY 229

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 230 KADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 277


>gi|297568633|ref|YP_003689977.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924548|gb|ADH85358.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 407

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 13/265 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             + E      +L        E R +A E +  KS F+ +MSHELRTPLN I+G SEV+ 
Sbjct: 137 RLKEEVQAATVDLFRMVEELKEARDQALEASRLKSEFIGNMSHELRTPLNQIIGLSEVML 196

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +   P     ++ Y+  I ++   L   +N +L+LS++++G+ +LSE    L +++   
Sbjct: 197 DQ---PEMLADHRNYLQTIVKAAWGLNGTLNNVLELSQLDSGQVDLSEQDFQLDELLTVI 253

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               Q  A+E+ +E+     P +   +  D   + QV+  LL NA KFT   G + V V 
Sbjct: 254 RQHYQAEARERGLELTVVRMPGVPAQLRGDSARLEQVLQLLLDNAFKFTEQ-GSIAVKVE 312

Query: 395 WTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
             +G            + + D G GI   +   +  SF Q   ++     G GLGL +A+
Sbjct: 313 RENGNDHGNGGVLRLRVLVSDTGCGIPAEKQECIFASFRQADGSLTRCHGGAGLGLAVAK 372

Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471
            ++   GG+  + S+  +G   I  
Sbjct: 373 RLVKLLGGEISVTSEPGKGSTFIFS 397


>gi|86141688|ref|ZP_01060212.1| Sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831251|gb|EAQ49707.1| Sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 361

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 11/349 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLA 194
           + ++  +  L + +S+       + +   + F  V  ALS   I         +    + 
Sbjct: 14  FSSLMITVALTLFVSVFFYMTNAIDWVFIVLFALVCFALSFLLIQVRVERFIYNRVKQIY 73

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             ++     +    +    + S   E +   A     K   +  + R E     +  F+ 
Sbjct: 74  DDVTLLDVTSLRRGQITTDMSSLTKEVERFAAS---KKLEIESLKIREE----YRKEFMG 126

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +++HEL+TPL    G+   +    M   +    K+Y+     S + L+ L+N++  ++++
Sbjct: 127 NVAHELKTPLFTAQGYILTLLDGAM--KDKSVRKKYLKRAGASIERLVYLVNDLDMIAKL 184

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           E G   +      ++++V++   +L++ A +KNI +   ++      V AD + ++Q++ 
Sbjct: 185 EVGDLNIRYEYFDMVELVKDTFELLEMEAAKKNITLTTDMEYDYPIMVNADRERIQQLLT 244

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ N+VK+    G   +++         + + DNG GIA   IP +   F +   +   
Sbjct: 245 NLIVNSVKYGKQDGTTEISIENLIQNKVIVRVTDNGEGIASEHIPRLFERFYRVDKSGSR 304

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            E G GLGL I + I+  H  +  + S    G E    L     L   P
Sbjct: 305 REGGSGLGLSIVKHIIEAHDEKIYVESDFGVGSEFSFTLEKAEELPEAP 353


>gi|167647488|ref|YP_001685151.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167349918|gb|ABZ72653.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 835

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 7/332 (2%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +  S    ++++L + V      V +            L +         ++    I   
Sbjct: 359 LVWSAVKTASWVLLFGVLGVILQVALLYLVMRHTVERPLRLLADAHRTGEVAEAECIEAR 418

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             +      + +++KD  I  L   +    E     E  N AKS FLA+MSHELRTPLN 
Sbjct: 419 TDEIGALARTLRSQKDRNIELLRSLEERVAERTAELERANQAKSVFLANMSHELRTPLNG 478

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ++   + +  E+    + E  +E    +  SG+ L  ++ +ILD+S+IEAG++ L+ +  
Sbjct: 479 VIAIGDRLAEES----DPERRRELAALVTSSGRLLEQVLGDILDVSKIEAGQFRLNPTPF 534

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L  +V     + +  A+ K++     I+P ++ S   D   + Q++ NLL+NAVKFT +
Sbjct: 535 DLAQLVGGVAELHRAAAEAKSLHFHWSIEPGVAGSYLGDSGRISQILNNLLANAVKFTVM 594

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V ++V   +  G   ++ D G G  +     +   F Q   +I     G GLGL I 
Sbjct: 595 -GEVVLSVER-ADGGLAFTVTDTGVGFDDTVRERLFKRFVQADQSITRQFGGTGLGLSIC 652

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            ++    GG+   R+ L  G      LP  RV
Sbjct: 653 AALAEMMGGRIDARAVLGRGAMFRVDLPLPRV 684


>gi|76364060|sp|P0C0F7|RPFC_XANC8 RecName: Full=Sensory/regulatory protein rpfC
          Length = 677

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 42/380 (11%)

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
              V     L+G +    C   +  ++     P          + I   +   SN++   
Sbjct: 24  RPQVSHTRRLIGMLLDYTCTGAIMAIQ---GEPASPLYAVCMWVTIGNGLRYGSNYLRAA 80

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
               S   +   L +    +   L   L   L     +F  +   + +            
Sbjct: 81  TAMGSLCFLGAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR------------ 128

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
                             + A   N AKSRFLA+MSHE RTPLN + G +EV+    +  
Sbjct: 129 ----------------AVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRL-- 170

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +   KE +  I  S + LL+L+ E+LD+S IEAG+  +     SL +++    ++LQ 
Sbjct: 171 --DAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQP 228

Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
           +A+ + +E   ++   +  +   D   +RQV+LNL+ NAVKFT   G V + V   SG  
Sbjct: 229 QARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFT-EHGHVLLRVTRVSGSA 287

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    ++D G G+     P +  +F Q  + +    +G GLG  IA+ ++   GG 
Sbjct: 288 EDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGS 347

Query: 456 FLIRSKLREGVEVIAILPNT 475
              +     G      LP  
Sbjct: 348 IGFKENQPSGSVFWFELPMA 367


>gi|224535633|ref|ZP_03676172.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522754|gb|EEF91859.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 224

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLN+I+GFS++++   +   + E  K+++  I+ +   LL LIN+I
Sbjct: 3   KSAFLANMSHEIRTPLNSIVGFSDLLKD--IEAFSPEEVKQFVDTINTNCTLLLALINDI 60

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDLSRIE+G  +   +  +L  ++++     +L        + +  +    S+  D   +
Sbjct: 61  LDLSRIESGSMDFRFAGYNLTFVMQQIYDSQRLSMPRGVELVMKLPEGEGKSIVTDSVRL 120

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QVI N ++NA KFT   G +               ++D G GI+E     +   F +  
Sbjct: 121 KQVINNFINNAKKFTTQ-GSITFGFQTEEPGYTVFFVEDTGSGISEENQRRIFERFYKVD 179

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               S  QG GLGL I Q+I+    G+  + S+L +G      +P
Sbjct: 180 ----SFTQGAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 220


>gi|167638126|ref|ZP_02396404.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177651128|ref|ZP_02933959.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|254736781|ref|ZP_05194487.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|167513943|gb|EDR89311.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172082954|gb|EDT68016.1| sensor histidine kinase [Bacillus anthracis str. A0174]
          Length = 484

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|149277244|ref|ZP_01883386.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
 gi|149232121|gb|EDM37498.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
          Length = 341

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 148/342 (43%), Gaps = 14/342 (4%)

Query: 140 YKSATLLIALSISALSNFMLPYAVF---LSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
            K + L++  + +   +  L    F     F  +   ++   + S  V    L   + + 
Sbjct: 1   MKLSVLVLIAACAVGLSIGLVNFYFQKDWYFMLMSFGVA--FVTSFIVFYYLLEKYIYSK 58

Query: 197 LSFFTYITY--HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSR 251
           +     + +   L K     L      D +       K  +   ++  E   ++   +  
Sbjct: 59  IVLIYKLIHNLKLGKDLKDALGEYVSSDPINDVEHEVKEWAGAKKREIEILRKQEQFRRE 118

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FL+++SHE +TPL A+ G+ E ++   +   + E   +++     + + L  LIN++  +
Sbjct: 119 FLSNVSHEFKTPLFAVQGYIETLQDCLLD--DPEQAMKFLKKAETNVERLSYLINDLDSI 176

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S++E+G   ++      + + +E + +L+ RA+ K+I I  K   +    V AD + +RQ
Sbjct: 177 SKLESGEIPINYEKFDFVVLAKEVMDVLEDRAKTKHITISFKDKYTHPAYVRADREKIRQ 236

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V++NL+ N++K+    G   + +     +   + + D+G GI E  +P +   F +    
Sbjct: 237 VMINLIQNSLKYGKDHGSTAIKIFELHDQYL-VEVTDDGIGIDEKHLPRLFERFYRIDTH 295

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               E G GLGL I + I+  H     +RS L+ G      L
Sbjct: 296 RSRQEGGTGLGLAIVKHILEAHQQIISVRSTLQIGSTFAFTL 337


>gi|118479812|ref|YP_896963.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044095|ref|ZP_03111332.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118419037|gb|ABK87456.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196025431|gb|EDX64101.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 484

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|30264742|ref|NP_847119.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47530215|ref|YP_021564.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187560|ref|YP_030813.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65322039|ref|ZP_00394998.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869725|ref|ZP_02214383.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634004|ref|ZP_02392327.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170685756|ref|ZP_02876979.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705544|ref|ZP_02896008.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190568318|ref|ZP_03021226.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227817461|ref|YP_002817470.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229604734|ref|YP_002868950.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687480|ref|ZP_05151336.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254725043|ref|ZP_05186826.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741818|ref|ZP_05199505.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754584|ref|ZP_05206619.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757416|ref|ZP_05209443.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30259417|gb|AAP28605.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47505363|gb|AAT34039.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181487|gb|AAT56863.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164714554|gb|EDR20073.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167530805|gb|EDR93507.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129669|gb|EDS98532.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670220|gb|EDT20960.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190560574|gb|EDV14551.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227002759|gb|ACP12502.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229269142|gb|ACQ50779.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 484

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 456

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           +   G     + F +        +++      A +   I E            +R  E N
Sbjct: 166 LVAMGRPVGFIFFSSNAPNTYRNAHIATFQQIAGQLATILEKSRLY-------ERLMELN 218

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+RFL   +H+LR PL  + G+ +++  E +GPL NE  +E +G +    + +  L+ 
Sbjct: 219 DLKNRFLGVAAHDLRNPLGVLNGYIDLLRQEALGPL-NEAQQEVMGVMADVAERMSALVE 277

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++LD+S IE+G+ EL    + L   ++       L AQ K+I I   I   L +V  D +
Sbjct: 278 DLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPTVAVDSR 337

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + QV+ NL++NAVKF+     + +  G    +   IS+ D GPGI   E   +   F +
Sbjct: 338 RLGQVLDNLIANAVKFSPRDSTITLG-GRADDQSVRISVSDQGPGIPAEERAQLFQPFRR 396

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           GS A  + E+  GLGL I Q ++  HGGQ  + +    G      LP       
Sbjct: 397 GSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPRQPDPEQ 450


>gi|332994626|gb|AEF04681.1| putative signal transduction histidine kinase two-component system
           protein [Alteromonas sp. SN2]
          Length = 936

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           ++AK++FLA+MSHE+RTP+N I+G  E++    +     +  +     I  S  +LL ++
Sbjct: 571 SVAKTQFLANMSHEIRTPMNGIIGSCELMMELPL----PDGARHRTETISTSASYLLMIL 626

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364
           + ILD S+IE+G+  L + ++S+   +  C ++ +  A +K I I   ID S+   V  D
Sbjct: 627 DSILDWSKIESGKMLLDKRSVSVAQTIDACSVLYERSASKKGISINVNIDESVPKAVITD 686

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + Q+I NL+SNA+KFT   G + V   +  G     S+ D+G GI+  +I ++   F
Sbjct: 687 GGKLSQIINNLVSNAIKFTHQ-GTILVEAKYRQGELSC-SVIDSGIGISAKKIESIFDQF 744

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q    I     G GLGL I + ++   GG   + S    G       P  +
Sbjct: 745 EQADATITRDYGGTGLGLAITKGLVELLGGSISVDSNEGTGTTFCFSFPCEK 796


>gi|188996682|ref|YP_001930933.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931749|gb|ACD66379.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 337

 Score =  252 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  F++++SHEL+TP++ +    E IE E           +++    +    + +LIN
Sbjct: 115 QAKKDFVSNVSHELKTPISVLKSAMETIEEEIKDS----NILKFVDMAKKRINQMDSLIN 170

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R+E+    +++    L   V +    LQ   ++KNI++   +      V+ADE+
Sbjct: 171 DLLILARLESQEDLVNKKKYLLYKQVEDIFEDLQHLTKDKNIKLKNNVPKDF-EVYADEQ 229

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +   + NL+ NA+K+    G V V    T G+   IS+ D G GI    IP V   F +
Sbjct: 230 KLSIALKNLIENAIKYNVQNGTVEVNAK-TDGKYDIISVIDTGIGIPPESIPLVFERFYR 288

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +      G GLGL I + I   H G+  + S++ +G +    +P 
Sbjct: 289 VDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSKFYIKIPK 336


>gi|319893720|ref|YP_004150595.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163416|gb|ADV06959.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 610

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       +      ++       + ++
Sbjct: 371 QQIERERREFVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQ--FLSVTREETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++     +++  +     + + I   ++ A++      + I        
Sbjct: 429 RLVNDLLHLSKMDNETETITKEIVDFNMFINKIINRHEMAAKDT--TFVRDIPRETIFTE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 487 VDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIF 546

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  ++  
Sbjct: 547 DRFFRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEKIEE 604


>gi|123969074|ref|YP_001009932.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
 gi|123199184|gb|ABM70825.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
          Length = 688

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L++E   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSDEEQIEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++  +  
Sbjct: 469 LVNDVLDLSRLESGKI-VQLEQMDIKPAIEQTLRNYRLNATEKNVSLAHDIEETIPPILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLLGNGLKFSPKNSTLIIRAYTWPDSCPAFPPSIKNDAAPQCELVSPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEIADTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|255029763|ref|ZP_05301714.1| hypothetical protein LmonL_13124 [Listeria monocytogenes LO28]
          Length = 383

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 147 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 204

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 205 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 263

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 264 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 322

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 323 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP----YSDLP 378

Query: 483 EDNHE 487
           ED+ E
Sbjct: 379 EDDWE 383


>gi|119510843|ref|ZP_01629968.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119464522|gb|EAW45434.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 648

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 19/340 (5%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
            I ++++ + N +L          +++ L+   I +  +  + LA  LA  L        
Sbjct: 276 WIVVAVTTVDNALL---GLEEIKLILIVLTVGLIGASLLASLYLAPYLANPLEELRDYAL 332

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVA-----------KSLSDETRKRAEEENLAKSRFLA 254
           +L   +      +  K     +L  A               +   K A+  N  KS+FLA
Sbjct: 333 NLHSHHAAQPVPRNFKIREFNQLAQAIDQMVERLKAWAEELEIAWKEAKTANQIKSQFLA 392

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           + SHELR PLN I+    V+        N E   E++     +  HLL +INE+LD+S+I
Sbjct: 393 TTSHELRNPLNVIINCVRVVHEGLCD--NREEEIEFLKRADDTAIHLLGIINELLDISKI 450

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+  + +  I L  I+ E I +  +  Q K +++   +   L  V AD   ++QV++N
Sbjct: 451 EAGKLSVVKVPIDLRQILLEVINLQSVNVQNKGLQLKTDLGTDLIPVEADAAKLKQVLIN 510

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           ++ NA KFT   G + +    +      +SI D G GI   +   +   F          
Sbjct: 511 IIGNATKFTDE-GSIRI-ATISHKFQVIVSITDTGLGIEPDQQHKLFRPFVMLDGGATRK 568

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
            +G GLGL I+++++   GG   + S  + +G  V   LP
Sbjct: 569 VEGTGLGLAISRNLIELMGGTITLESAGINQGTTVKITLP 608


>gi|293369521|ref|ZP_06616100.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635406|gb|EFF53919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1197

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF  ++ +  Q   +  +      G+L   + FF        +  ++ +           
Sbjct: 609 FFVHIIPMWYQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIE---------- 658

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       R + EE +  K RF  +MSHELRTPL+ IL   E +  ++        
Sbjct: 659 ------------RNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQ 706

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K  +  ++++G+ LL+++N++LD  + EAG   +  + +++  ++++   + +  AQ++
Sbjct: 707 QK--LDYVYKNGRKLLHIVNQLLDFRKAEAGVMPIHVAQVNVEGLLQDAFALFKENAQKR 764

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I    K D       AD   +  +++NLLSNA KFT  GG + +++ WT G     +++
Sbjct: 765 AISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSILLSL-WTEGDTYGFTVR 823

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G G++  ++  +   F Q     K    G G+GL + + ++  H G   + S+  +  
Sbjct: 824 DSGIGMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYT 879

Query: 467 EVIAILPN 474
           E    LP 
Sbjct: 880 EFKVTLPA 887


>gi|209526146|ref|ZP_03274677.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493402|gb|EDZ93726.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 335

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 14/283 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T     + +  +   A                +E R  A   +  KS FLA+ SHELRTP
Sbjct: 51  TRQWTAAEIDFVRELATHVGTAIAHATLYQELEEARLEAIALSRLKSEFLANTSHELRTP 110

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN ++GF +++        + E  +E+I   H++  HLLNLIN++LD+++IEAG+ ++  
Sbjct: 111 LNGMIGFLQLVLDGM--ADDPEEEREFIEQAHQAAIHLLNLINDVLDIAKIEAGKMDIEL 168

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVK 381
           + + + +++ E    ++ + ++KN++   + +   S   V+ + + + QVILN L NA+K
Sbjct: 169 ALVKVDEVIGEIEHFIRPQVEQKNLKFTIQPEAVNSQIIVYGNYQRILQVILNFLENAIK 228

Query: 382 FTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           FT  GG                          + D G G+   +   +  +F Q      
Sbjct: 229 FTHKGGINISIGIIRKNVMIQNQKFPGFVEFRVVDTGIGVPIEKQDRLFHAFSQVDSGYT 288

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
               G GLGL I+Q ++   GG+    S     G  V   +P 
Sbjct: 289 KQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIPL 331


>gi|329997600|ref|ZP_08302870.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
 gi|328538976|gb|EGF65028.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
          Length = 779

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 389 PHKVITDGPRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 448

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 449 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 508

Query: 474 -NTRVLNFIPEDN 485
               V + + ED+
Sbjct: 509 IAEEVEDTLAEDD 521


>gi|312130453|ref|YP_003997793.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
 gi|311906999|gb|ADQ17440.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
          Length = 339

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 162 AVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQ 218
            VFL F P     +      +  ++   L   +   L F     I + L +     +S +
Sbjct: 21  VVFLQFVPGADRTMMFITGSTSFLIAYLLVYYVIDVLVFQEVNKIYHSLRELKDAEISKK 80

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAK------SRFLASMSHELRTPLNAILGFSE 272
           +    +    ++   +S    K+ EE +  K        FLA +SH+L+TP+ A  GF  
Sbjct: 81  SIIKSVNPLKKLKNEISHYVSKKEEEIDTLKKMETFRREFLADVSHDLKTPIFAAQGFIH 140

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +   + E   +++    +S   L  L+ +IL L+++E+G   +    I L ++V
Sbjct: 141 TLLDGAI--EDPEVSHKFLKKAAKSLDGLEVLVKDILILTQVESGDIRMHFEPIDLKEVV 198

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E    L+ +A++++I ++ K       V AD   + QV+ NL+SN + +   GG+V VT
Sbjct: 199 EEVFEQLESKAKKRDIRLYIKT-KDPLLVNADRLRISQVLTNLVSNGITYGKPGGKVTVT 257

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  T      + + DNG GI+E  +P V   F +   +   A  G GLGL I + I+  H
Sbjct: 258 IKGTE-----VKVADNGIGISEEHLPRVFERFYRVDKSRSRAVGGTGLGLAIVKHILNAH 312

Query: 453 GGQFLIRSKLREGVEVIAIL 472
                + SKL EG      L
Sbjct: 313 DASIDVISKLGEGTTFTFTL 332


>gi|218282497|ref|ZP_03488753.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
 gi|218216552|gb|EEC90090.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
          Length = 673

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 138/273 (50%), Gaps = 13/273 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +    +       EK   + + E       + + +AE+ N AKS FL +MSH++RTP+N
Sbjct: 259 RVVSVLLANRDFTEEKKRELEQEE----ALRQEKIKAEKANEAKSIFLFNMSHDIRTPMN 314

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+G+S++++ E    L N     Y   I +S + LL++IN +LD++R+E+G+ EL E+ 
Sbjct: 315 AIVGYSQLMKKE----LTNPKLVHYQEMIEQSSKLLLSIINNLLDMARVESGKMELDENY 370

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             + +I +         A  KNIE+   ++     +  D   M++++ NL+SNA+K+T+ 
Sbjct: 371 EVIGNISQLVCSAFAAEASRKNIELNIIVNVEHKHIIVDSTKMQEILSNLISNAIKYTSA 430

Query: 386 GGRVHVTVG---WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           GG+V +      +       I   + D G G++E  +P++   F +      S   G GL
Sbjct: 431 GGKVTIDTKELPYDKEGYVLIQTKVTDTGIGMSEEFLPSLFELFTRERNTTLSKIPGTGL 490

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G+ I ++ +    G   + S+L +G      +P
Sbjct: 491 GMAIVKNFVDLMNGSIEVESELGKGSTFTITIP 523


>gi|119486213|ref|ZP_01620273.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456704|gb|EAW37833.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 659

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 147/332 (44%), Gaps = 22/332 (6%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            +F     ++ A    A+     L   L  +   AL+  +  +      N+KI       
Sbjct: 320 VLFYLTISLIAASIIAALYLSRDLARPLERLRDYALTINSLESPRPIPQNLKIREFIQLG 379

Query: 222 DDLIAELEVAKS---LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +   +E  +S     +   K A+  N  K  FL  +SHELRTPLN I+   + +  + 
Sbjct: 380 QAISIMVERLQSRASALELATKEAQIANQLKDEFLRIISHELRTPLNGIINSLQFLRDDL 439

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 E  +EY+   ++S  HL +++N+ILD++ I+ G+  +++  + L+ I+RE I  
Sbjct: 440 CDTPKEE--QEYLDMANKSALHLYSIVNDILDIALIQEGQLSITQKPVDLVKIIREAIAT 497

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395
             L   +K + +   +      VWAD   ++QV+LN+LSNAVKFT   GR+ +T      
Sbjct: 498 QSLEVHQKGLSLKLHLQ-DPIKVWADPDKLKQVLLNILSNAVKFTKK-GRIIITAEVLPI 555

Query: 396 -----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
                             I ++D G GIA  +   +   F     +      G+GLGL I
Sbjct: 556 VQCDRISYESCEEKFQAVIVVQDTGIGIAVEKQDKLFQPFAVVDGSTTREFGGIGLGLSI 615

Query: 445 AQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
           +QS+M   GG   + SK   +G  V   +P  
Sbjct: 616 SQSLMTMMGGSIELYSKGENQGTTVTLCIPVA 647


>gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 788

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + D +      +      +K AE  N AKS FLA+MSHELRTP + I+G   +++    G
Sbjct: 385 RLDDVTAQIRMEEGLIAAKKSAESANEAKSEFLANMSHELRTPFSGIMGMMRLLQ----G 440

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              ++  + Y+    ++      L+ ++LD+SRIEAG+ ++ E   S  D+    + +  
Sbjct: 441 TGLDDEQRRYVCLAIKASDRFTRLLTDLLDISRIEAGKLDIHEQEFSTSDLHDSVMEIFA 500

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGW 395
           L +QEK I +   IDPS+   +  DE  +RQ++ NL+ NA+KFT  G      + ++   
Sbjct: 501 LASQEKGISLEFFIDPSVPARLVGDEMRVRQILFNLVGNAIKFTEKGCVCVEIILLSPVK 560

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +      ++ D G GI    +  +  SF Q   A   A QG GLGL I + ++   GGQ
Sbjct: 561 GADLRVLFTVSDTGIGIPVDMLSGIFGSFVQVDGASSRAFQGAGLGLAIVKRLVKLMGGQ 620

Query: 456 FLIRSKLREGVEVIAILPNT 475
               S   EG  +   LP  
Sbjct: 621 IFADSIEGEGTNMHVELPFK 640


>gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
 gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
          Length = 563

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+I          
Sbjct: 316 ITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMICQTEEEEE-- 373

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 374 --RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 431

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +++I          ++ D   + QVI+N  +NA+KFT   G + +      +    Y 
Sbjct: 432 SPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPK-GSIEMGYRIEEAKDEIYF 490

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG   + SK  
Sbjct: 491 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGVESKEG 546

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P +  + 
Sbjct: 547 EGSRFWFRIPRSEKIE 562


>gi|152987665|ref|YP_001346520.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150962823|gb|ABR84848.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 795

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 170/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  NP +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 232 AGIEYFWPDNPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 289

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              LL L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 290 LVMLLAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 343

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 344 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 402

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E         N  K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 403 RKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 458

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          RA+EK +    
Sbjct: 459 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFVL 518

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 519 QLDDSLPDTLEGDAGKLAQALGYLIDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 578

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 579 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELSHESRPGQGSRFL 638

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 639 LRLQLTQPAQGL 650


>gi|229030925|ref|ZP_04186944.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
 gi|228730419|gb|EEL81380.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
          Length = 448

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTNATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---EMSVEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELES-SVMISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+   E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEREEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 QVELPK 448


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R   EE   AK +F  ++SHELRTPL  I    E I      P  +   +  +  + R+ 
Sbjct: 381 RHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYI---IHDPNLSPQQRNMLQIVQRNV 437

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +I+ G+  L  S  +L + +R+ + +    A++K+I +   +  +L
Sbjct: 438 AVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSAL 497

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   + ++  NLLSNA+K+T  GG +       + +   I + DNG GIA+ ++P
Sbjct: 498 P-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADK-VKIMVSDNGCGIAQNDLP 555

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            V   F Q S A      G G+GL + ++    H G+  + SK  EG      +P  +  
Sbjct: 556 YVFDRFYQASNAGH----GTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVCMPLRQPG 611

Query: 479 NFI 481
              
Sbjct: 612 EVS 614


>gi|296502578|ref|YP_003664278.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323630|gb|ADH06558.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 357

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 151/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 16  FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 75

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 76  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 131

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 132 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 188

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 189 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 246

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 247 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFERFYK 305

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 306 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352


>gi|83815646|ref|YP_444896.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757040|gb|ABC45153.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 757

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +      ++ AEE +  KS  LA+ SHE RTPL +I+GF+E I   TM   ++     +
Sbjct: 494 QEEALRTAKQEAEEASQMKSALLANTSHEFRTPLTSIIGFAEEIA--TMAEDDDAPIGRF 551

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I  SG+ LL  ++ IL+LSR++ G          +  +  E        A E +I +
Sbjct: 552 ADHIENSGRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIAL 611

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             + + +     AD +G+R  + NL+SNAVK+T  GG V + V  T      + ++D G 
Sbjct: 612 RTEANGTPVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRV-RTGDEAAVLEVEDTGV 670

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+   +  T+   F Q S  +    +G GLGL + +  +   GG   + ++   G     
Sbjct: 671 GMDPAQTETLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTV 730

Query: 471 ILPNTRVLNFIPEDNHEST 489
            LP       + + +  ++
Sbjct: 731 RLPEAEAPEKVGDPSASAS 749


>gi|307690355|ref|ZP_07632801.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1069

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 4/233 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP--LNNETYKEYIGDIHRSGQHLLN 303
              +K+ +  ++SHELRTPLN IL   ++I     G   +      +Y+  + R+   LL 
Sbjct: 831  ERSKNNYFINLSHELRTPLNVILSTLQLISNLNEGEKYIEKPNLNKYVDIMSRNSLRLLK 890

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            +IN+++D S+IE G Y+L+ S + ++ +V E  + ++   +  NI++    D     +  
Sbjct: 891  VINDLIDASKIENGDYKLTISEVDIVYLVEEVALSMKDYIESNNIDLIIDPDIEEKLIEC 950

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   + + I+NLLSNA K++   G + VT+         ISIKDNG GIA      +   
Sbjct: 951  DRTQIERCIVNLLSNATKYSNKNGSIWVTI-LDDDTKVRISIKDNGIGIAPKNHDIIFER 1009

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            FGQ + +  +  +G G+GL + +S++  H G   + S+  +G + I  LP  +
Sbjct: 1010 FGQVNNSESNK-KGSGIGLSLVKSLVELHNGTIDLISEEGKGSDFIISLPVRQ 1061


>gi|302875025|ref|YP_003843658.1| histidine kinase [Clostridium cellulovorans 743B]
 gi|302577882|gb|ADL51894.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1034

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 4/233 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP--LNNETYKEYIGDIHRSGQHLLN 303
              +K+ +  ++SHELRTPLN IL   ++I     G   +      +Y+  + R+   LL 
Sbjct: 796  ERSKNNYFINLSHELRTPLNVILSTLQLISNLNEGEKYIEKPNLNKYVDIMSRNSLRLLK 855

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            +IN+++D S+IE G Y+L+ S + ++ +V E  + ++   +  NI++    D     +  
Sbjct: 856  VINDLIDASKIENGDYKLTISEVDIVYLVEEVALSMKDYIESNNIDLIIDPDIEEKLIEC 915

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   + + I+NLLSNA K++   G + VT+         ISIKDNG GIA      +   
Sbjct: 916  DRTQIERCIVNLLSNATKYSNKNGSIWVTI-LDDDTKVRISIKDNGIGIAPKNHDIIFER 974

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            FGQ + +  +  +G G+GL + +S++  H G   + S+  +G + I  LP  +
Sbjct: 975  FGQVNNSESNK-KGSGIGLSLVKSLVELHNGTIDLISEEGKGSDFIISLPVRQ 1026


>gi|295690558|ref|YP_003594251.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295432461|gb|ADG11633.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 574

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 191/466 (40%), Gaps = 19/466 (4%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
               +     R        +L  +   +   + L        T    F +  L  + +  
Sbjct: 107 APVAAASTMGRSKRLAEGAALALIGGCVAALIQLSGLAPAAPTGPLAFLLGFLALVTMGL 166

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
              +             +        L       L   L  L        +  T+  SA 
Sbjct: 167 GLAAGLLIGRRR-----QALREDRDALEIGWLETLLDGLPYLAIAVRGHEQVTTVRGSAP 221

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L ++             A         +A +           +     L         + 
Sbjct: 222 LGVSTEQLMTRGLADAAAPADR---ARLAAAIAQAHRDGAASLDFVPALGAERLLALDLQ 278

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                  V +L       D+ AE + A +  ++ R  AE     ++RFLA+MSHELRTPL
Sbjct: 279 RVAPNQLVGVLR------DVTAERDRA-AALEQARADAEGLAAGRARFLANMSHELRTPL 331

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++     GPL++  Y EY   IH SG HLL+LIN++LD+S+IEA R+EL   
Sbjct: 332 NAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRG 390

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                + ++  + +L++++    +++   + P    V AD + ++Q++LNL+SNA+KFT 
Sbjct: 391 VFDAREAIQAAMRLLRVQSDSAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTP 450

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V VT+         I + D G GI+  ++  +   + Q   A + A +G GLGL +
Sbjct: 451 RGGQVTVTLDGY-DGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRA-RGTGLGLSL 508

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHEST 489
            ++    HGG+  I S+L  G  V   LP    VL        E+ 
Sbjct: 509 VRAFAKLHGGEMAIESRLGAGTTVSVRLPVLLAVLPPAKTPEPEAP 554


>gi|225174724|ref|ZP_03728722.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169851|gb|EEG78647.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 530

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 9/308 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN---VKILSCQAEKDDLIAE 227
           ++      ++ +  + + LA  ++  +S  +     L + N           E  DL  +
Sbjct: 221 LLLAGMVILVVILFISVYLAMSISRPISRLSATVADLSRGNFSSDYDDDSLDEIRDLAGQ 280

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           L          +  + +    +++  A +SHELRTPL A+ GF E I    +   +    
Sbjct: 281 LNKMSVRLQNAQAASAKMEEDRTKLFAEISHELRTPLTAVQGFVEAIRDGMVP--DEAVL 338

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K Y+  I     H+  L++++L LSR+E+G   + +  + L  + +  +  ++  A   N
Sbjct: 339 KRYLETICDQTVHITRLVDDMLSLSRLESGNITVEKLPLDLTALAQGVVTSMEGMAGGNN 398

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
             +        S V  D   M Q+I NLL NA+K T   G + V V     +   ++I D
Sbjct: 399 TTLQFVTKTGNSFVLGDVDRMEQIIRNLLKNAIKAT-KDGTIKVGVEEQQKQ-VILTIAD 456

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKS--AEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           NG GI   E+P +   F +          E G GLGL I + ++    G+  + S+L +G
Sbjct: 457 NGIGIPPDELPHIWDRFYRTKNQRDRYMQENGSGLGLVIVKKLVELQDGKIEVISRLGKG 516

Query: 466 VEVIAILP 473
                  P
Sbjct: 517 TTFTITFP 524


>gi|113475857|ref|YP_721918.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
 gi|110166905|gb|ABG51445.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
          Length = 707

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 27/292 (9%)

Query: 224 LIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           L   +E     +D+     K A+  N  KS FLA++SHELRTPLN I+G  ++I      
Sbjct: 418 LQKMVERLNRWADKIEVASKEAQVANQLKSEFLANISHELRTPLNGIIGSLQIIYDGFCD 477

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E    ++   + S  HLL +I++ILD+ +I+A    ++   I++I ++ E + + +
Sbjct: 478 TREEEIQ--FLKQANDSAIHLLRIIDDILDIRKIDARNLYMTFENINIIKLLEETVDIFR 535

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
              ++K++ +          V+ D+K +++V  N++SNA+KFT   G + +++     + 
Sbjct: 536 YDLEQKSLVLKLNASEEKILVYVDKKELQKVFENVISNAIKFTEK-GNIDISICRKYNQC 594

Query: 400 ------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
                                ++I+D G GI   E   +   F            G GLG
Sbjct: 595 IFSENQNNLVNAHTHKVNQVLVTIQDTGIGIDPEEQDKLFQPFVMVDGTKTRKFGGNGLG 654

Query: 442 LPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           L +A+ ++    G   + S+ +  G  V   +P    L  + +    ST+ K
Sbjct: 655 LAMARGLVEMMNGNIHLYSEGIGRGTTVYITIPIQERL-SLEKKQDISTEIK 705


>gi|312126426|ref|YP_003991300.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776445|gb|ADQ05931.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 357

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+ +PL +I GF+  ++ E +     E  K Y+  I      L  
Sbjct: 126 AMEEMRQEFISNISHEIGSPLTSIRGFASALKNENLSF---EQRKHYLDIIENECIRLSK 182

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +++ +Y L  +   L   ++  I+  + +  EK ++I   +D     + A
Sbjct: 183 LSENLLRLTMLDSEQYPLHLTTYRLDKQIQLTILEFEPQWSEKELDITLSLDE--IIITA 240

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  ++QV  NL+ NA+KFT  GG + + + +       ++I D G GI+E ++P +   
Sbjct: 241 DQDLLKQVWQNLIDNAIKFTLKGGAIKIQL-YKKETYAIVTISDTGIGISEQDLPRIFER 299

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +   A  G GLGL I + I+  H G+  + S+L +G E I  LP 
Sbjct: 300 FFKADKSRNRAVSGSGLGLSIVKKIVELHNGKIFVNSQLGKGTEFIIQLPL 350


>gi|90579698|ref|ZP_01235507.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
 gi|90439272|gb|EAS64454.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
          Length = 669

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 170/375 (45%), Gaps = 38/375 (10%)

Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA---IMSMH 183
           V           IY S+  +I   +  L  F+LP+ +F+ F  V +          +   
Sbjct: 154 VSFNGDNIFNYVIYYSSAEIIRTILIQLFVFILPFLLFIIFILVYMYRKVTRPLTFLIGQ 213

Query: 184 VLDISLAGMLAT----ALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDET 238
           +  I   G+  T    A    + +   L K++  I + +++   L  +  E A  LS+  
Sbjct: 214 LPKIGSGGVNITEVEDAEGEVSLLASELKKADECIYNTESKLQGLNRKLREQANDLSEAI 273

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + +AE        F+A+MSHE+RTP+N +LGF + +E   +    ++  +  IG I  S 
Sbjct: 274 KIKAE--------FMANMSHEIRTPMNGVLGFVQCLEERNL----DQESQRQIGYIKESA 321

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL +INEILD S++E+G  EL  +A +L   V  C      +A+ K I++  +I   L
Sbjct: 322 YSLLVIINEILDYSKLESGNVELHMTAFNLKPFVHSCATPFIHQAKIKKIQLSTEIGEGL 381

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------RGQ 401
           + S  ADE  +RQ+++NL+ NAVKFT   G V + V                     +  
Sbjct: 382 ADSFTADEGRLRQILINLIGNAVKFTHT-GSVKLVVEKRDPPEQQCEELKKYNDKHIQWL 440

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              +KD G GIAE ++  +  S+ Q   +I     G GLGL I+ S+      +  + S 
Sbjct: 441 RFKVKDTGIGIAEEKLAFIFDSYTQADGSISRQFGGTGLGLSISNSLCRLMSAKLQVDST 500

Query: 462 LREGVEVIAILPNTR 476
           +  G E    +P  +
Sbjct: 501 IGNGTEFWFDIPLKQ 515


>gi|331005922|ref|ZP_08329270.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
 gi|330420278|gb|EGG94596.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
          Length = 701

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 28/301 (9%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           + +       +F    + +       D+ A  E A+    + +  AE+ N AKS FL+SM
Sbjct: 247 IFWMRSRGQAIFNGAGRAILMSGINIDITAVKE-AEKRVRKAKNEAEKANNAKSTFLSSM 305

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPLNAI+GFS++    +  P +    +E    I+ +G+HLL LIN++LDL+++EA
Sbjct: 306 SHELRTPLNAIMGFSQLAVNNSSLPSS---QRESAKQIYSAGEHLLRLINDVLDLAQVEA 362

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNL 375
           G+  L    +    I+++C   +   A E+ I +     D     V+AD   ++Q +LN+
Sbjct: 363 GKITLMLEPVLPKRIIQDCFAFVSPLAVERGINLHFIDSDADTICVYADSMRLKQCLLNI 422

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           ++NAVK+    G V V++         I ++D G GI+  +   +   F +   A  SA 
Sbjct: 423 INNAVKYNTDNGSVFVSLKQ-KKNSVCIIVEDTGSGISSEKQKQLFQPFNRL-GAEHSAV 480

Query: 436 QGVGLGLPIAQSIMANHGGQFL---------------------IRSKLREGVEVIAILPN 474
           +G G+GL + + ++    G                        ++++L+ G      LP 
Sbjct: 481 EGSGIGLVVTKELVEKMQGTLSYHDAVYNLNDMKGVAGKNDGVVKNELQSGSGFTIELPV 540

Query: 475 T 475
            
Sbjct: 541 A 541


>gi|126663000|ref|ZP_01733998.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteria bacterium BAL38]
 gi|126624658|gb|EAZ95348.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteria bacterium BAL38]
          Length = 347

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 21/339 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L  +V+++ F +   L     +    L I LA       + F  I + +     K + 
Sbjct: 11  FALKSSVYVTLFFLATILLYHYFVQSLDLLIVLAFSFVFYCATFFLIQFRVEHFIYKRVK 70

Query: 217 CQAEKDDLIA------------ELEVAKSLSDETRKRAEEENLAK------SRFLASMSH 258
              +   L+                + K +    R +  E    K        FL ++SH
Sbjct: 71  KIYDDVSLLETTSYINQPVTTDMATLTKEVKKFARDKKLEIETLKIREEYRKEFLGNVSH 130

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPL  I G+   +    M   N    K+Y+    +  + L+ ++ ++  ++++E G 
Sbjct: 131 ELKTPLFTIQGYLLTLLDGPMDDKN--IRKKYLERAEKGVERLIYIVKDLDMITKLEVGE 188

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L  +  +++++V+    + +++A  KNI +      S    V AD++ ++Q++ NL+ 
Sbjct: 189 LNLDVTKFNIVEVVQNVFDLFEMKASNKNITLTFDTRYSKPIWVLADQEKIQQIVTNLVV 248

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           N++K+   GG   V++         + I DNG GI +  IP +   F +   +   +E G
Sbjct: 249 NSIKYGKKGGTTEVSIEDLINNKVIVRITDNGEGIEKQNIPRLFERFYRVDKSGARSEGG 308

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            GLGL I + I+  H  +  + S+L  G E    L   +
Sbjct: 309 SGLGLAIVKHIIEGHNEKIYVESQLGIGSEFSFTLEKAK 347


>gi|291294703|ref|YP_003506101.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290469662|gb|ADD27081.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 360

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 140/332 (42%), Gaps = 11/332 (3%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            + +  S S      L   +  +     +A    A +   ++    +  ++ ++      
Sbjct: 40  MMTLMGSQSLELRSDLERGLRSTLTTAWLASLPLAGLLAGLMAWLASRRISQSVRQLAQG 99

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  +     +        D+L +  +    +++      E+    ++  L+S++HELRTP
Sbjct: 100 SRAIALGQYQNRLKVQGDDELASLAQDFNRMTE----ALEKVEQHRTELLSSVAHELRTP 155

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+A+ G+SE +    + P       +    I R  + +  LI+++  +SRIEA   EL  
Sbjct: 156 LSALQGYSEALADGVLPPE------QAAAHIEREVRAMGRLIDDLALVSRIEAQAVELHP 209

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             +++    +E +       +   + +     PS  ++WAD   ++QV+ NLLSNA+++T
Sbjct: 210 QVVAVEAAFQEALERYATAFEACGVALKLNPLPSSVALWADPLRLQQVLSNLLSNALRYT 269

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V ++          I + D G GI     P +   F +   A      G G+GL 
Sbjct: 270 PAGGEVVLSASLQ-SHHVRICVCDTGVGIPLEHQPRIFERFYRADPARSRHTGGSGVGLT 328

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           IA+ ++   GGQ    S++ +G      LP  
Sbjct: 329 IAKGLVEAMGGQMGFESEVGKGSCFWFTLPRA 360


>gi|229158276|ref|ZP_04286343.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
 gi|228625234|gb|EEK81994.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
          Length = 484

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ V V        
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSI-DNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIEFDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|153806801|ref|ZP_01959469.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185]
 gi|149131478|gb|EDM22684.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185]
          Length = 623

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 10/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L  EL  ++      + RAEE N  KS FLA+MSHE+RTPLN+I+GFS+V+    +G  
Sbjct: 375 RLRDELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGS 431

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  + Y   I  +   LL LIN+ILDLSR+EA R  L+     ++ +  + +  +   
Sbjct: 432 TEEEQQSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCNQVVASVSF- 490

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401
           ++  + +           +  D + M+QVI+NL+SNA KFT   G++ +        +  
Sbjct: 491 SRRSDNQFLFNTSFESFRMETDVQRMQQVIINLMSNADKFTKQ-GKITLDFSVNEETQMA 549

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ D G GI + +   V   F +         QG GLGL I + I+    G+  I   
Sbjct: 550 VFSVTDTGCGIPKEKQALVFERFEKL----NEYAQGTGLGLSICKLIVYKWKGEIWIDPD 605

Query: 462 LREGVEVIAILPN 474
              G   +   P 
Sbjct: 606 YTGGARFVFSHPL 618


>gi|326795178|ref|YP_004312998.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326545942|gb|ADZ91162.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1000

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 22/302 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A+  +    + VL + L   ++  ++   Y+     + N ++     + ++     +VA 
Sbjct: 178 AIELRLYNQLGVLVMLLTVTMSIIIALLMYLIRESLRDNKRMARLANDLEETAVAAKVAA 237

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                            S FLA+MSHE+RTP+NAI+G + ++    +     E  + YI 
Sbjct: 238 QAK--------------SDFLATMSHEIRTPMNAIIGLTHLVLDTEL----QERQRRYIN 279

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  S  +LL LIN+ILD S++E+G+ +L E +  L D++     +    A+ K + +  
Sbjct: 280 RIDESSNNLLQLINDILDFSKVESGKLDLVERSYLLDDVLEYIHHISLPTARSKKLLLLV 339

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           + D +L  +   D   ++QV++N++ NA+KFT   G V VTV      G    ++D+G G
Sbjct: 340 QRDFNLDDAFIGDVTRIQQVLVNVVGNAIKFTDK-GYVCVTVKRRQEGGLLFCVEDSGIG 398

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I    +  V   F Q   +      G GLGL I++ ++   GG    +S++  G      
Sbjct: 399 IDS-TLD-VFDGFTQADASTTRKYGGTGLGLSISKRLLELMGGHISFKSQVGRGTTFFIE 456

Query: 472 LP 473
           LP
Sbjct: 457 LP 458


>gi|42781110|ref|NP_978357.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737031|gb|AAS40965.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 351

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 152/347 (43%), Gaps = 18/347 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATA 196
            +   + L I  SI+   +  +  A+ +   P V   +S        VL   L G+L   
Sbjct: 13  VLALFSFLTIIWSIAFYVSSSVINALEIQVSPFVTFLISDMVGFVFIVLIWVLIGVLMRP 72

Query: 197 --LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEENLAK 249
              +    I   + K      S +   ++     +   ++    ++DE           +
Sbjct: 73  KREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----AMEKMR 128

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++++SHE+++PL +I GF+  ++   +   + E  + Y+  I      L  L   +L
Sbjct: 129 QEFVSNVSHEIQSPLTSIKGFARALQDNNL---SEEKREHYLTIIETETTRLSKLSQNLL 185

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L+ +E+  Y    +   L   +++ ++  +    EK IE+   ++     + AD++ M 
Sbjct: 186 KLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWAEKEIELELNLEK--VHITADQESMS 243

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV +NL+ N++KFT  GG + + +     +   + I+D+G GI++ +   +   F +   
Sbjct: 244 QVWINLIHNSIKFTPNGGTITIQLKEYE-KVVEVRIRDSGIGISKEQKQHIFERFYKADS 302

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A  G GLGL I + ++  H G+  + S+  +G E I  +P  +
Sbjct: 303 SRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIPKYK 349


>gi|228957070|ref|ZP_04118842.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802603|gb|EEM49448.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 463

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKHISIAIEDEGEGIPLEDLPHIFERFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEILELHGGTITVTSEVDHGSCFIISLP 454


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 144/347 (41%), Gaps = 12/347 (3%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH-VLDISLAGMLATALSFFT 201
              ++  S+ AL        + ++       L  +       + ++ +A  +   +    
Sbjct: 244 LEAVLEASLEALVATDHAGGITMANAAAARMLGVRPGDRGRSLREVGVAPEILGIVREAA 303

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHE 259
              + + +  +   S  A    + +       +    R  +E      AKS F++  SHE
Sbjct: 304 ETGFSVREVELGEKSFWAYAARMDSGGRSQGGVILAVRDISEYRALERAKSAFVSDFSHE 363

Query: 260 LRTPLNAILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           LRTPL  I     +++   E + PL N      +         +  ++ E++ L+++++ 
Sbjct: 364 LRTPLTTIQSAVGLLQRARERLDPLEN----RALELAEGELSRIRAMVEELMTLAQMDSW 419

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +Y L  +   L  I+R+ +  ++ +A    IEI      +   +  D + + QV LNLL 
Sbjct: 420 QYSLQLAPAGLDRILRDAVEAVEPKALRFGIEINLY--EAGVHLTCDAQKLYQVFLNLLD 477

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVK++  G RV VTV  +  +   + +KD G GI E ++P +   F +       +  G
Sbjct: 478 NAVKYSEEGSRVDVTVAESGEQ-AVVRVKDTGVGIPEKDLPHLFERFYRVEKDRSRSTGG 536

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            GLGL I + I+  HGG   + S+L EG      LP        P  
Sbjct: 537 SGLGLAICKQIVEMHGGSISVESRLGEGSTFTVRLPKNPRRPEAPRA 583


>gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 578

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A++ +   R+  E     K+ F++ +SHELRTPL AI G   ++          + + ++
Sbjct: 333 AQAQNISERRAVE---QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYD-HKPQEFHKF 388

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I       + L+ ++N+ILD+ R+ +G  +    A S  +++ + I  LQ  A   +I +
Sbjct: 389 IEIALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITL 448

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                P+   +WA    M Q + NL+ NA+KF+     V ++  +         ++D G 
Sbjct: 449 EIL--PTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSA-YPQDDMVLFQVRDQGR 505

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++ T+ + F Q   +    + G GLGL I QSI+  HGG+  + S+L +G     
Sbjct: 506 GIPPEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYF 565

Query: 471 ILPN 474
            +P 
Sbjct: 566 TIPR 569


>gi|225574600|ref|ZP_03783210.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038214|gb|EEG48460.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM
           10507]
          Length = 442

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 152/315 (48%), Gaps = 10/315 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           +L  A        +++ +  A++ + +  + L  +LA  L+           +++  L  
Sbjct: 133 VLRVAREAGSIWKMISEAVPALLGICLGILLLCVILAYFLTRSLISPIEALATDMDSLRE 192

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +   D+L   +E  K   ++  + A      +  F A++SHEL+TPL AI G+SE+IE  
Sbjct: 193 KKIYDELRPFVETIKKQHEDILQNA----RIRQEFTANVSHELKTPLTAISGYSELIENR 248

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  E    +  +IH S   LL LIN+++ LS +++ + E ++  + L ++ R C+ 
Sbjct: 249 MAEG---EAAVRFAKEIHHSSNRLLTLINDVIHLSELDSMQLEETKEMVDLYEVARSCVA 305

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           MLQL+A++  + +          V +  + M +++ NL  NA+++   GG V+VTV   S
Sbjct: 306 MLQLQAEKHQVNLALLGVSC--QVLSTRQKMEELVYNLCDNAIRYNNKGGSVYVTVRP-S 362

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G+   +S+KD G GI +     +   F +   +   +  G GLGL I + I+A       
Sbjct: 363 GKKVILSVKDTGIGIPKEHQERIFERFYRVDKSRSKSTGGTGLGLAIVKHIVAGSNASME 422

Query: 458 IRSKLREGVEVIAIL 472
           + S+  +G E+  I 
Sbjct: 423 LDSEEGKGTEIRVIF 437


>gi|196040855|ref|ZP_03108153.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196028309|gb|EDX66918.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 484

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + I DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKIMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
 gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
          Length = 808

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/486 (22%), Positives = 180/486 (37%), Gaps = 27/486 (5%)

Query: 19  TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI 78
                G E           ++   +SL  ++    +  L    +  +      F    L 
Sbjct: 53  ARSDTGPEVGPGRRVTDAPVSAPAKSLQHLAVAGMIVGLAAGFVMVYGEGLNRFLGLGLT 112

Query: 79  TLAVYAANLSLGKKVMNSDIKIGEVY--VWRIWLLVGQIAIGLCW--------------T 122
             A   A   L    M   ++  +V     R  +   +      W              T
Sbjct: 113 FFAGGLAVWRLFADDMQRSVQALQVKDDKIRRLMARCEELEDRAWELGESDERHASILAT 172

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L  +V           +  +A  +  L  +      L   +                 + 
Sbjct: 173 LGDVVVRRDQDGIITYVNSAADDVFGLGHALQPGATLHLPLLEEVGFESAVTQALDKTTP 232

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +    L    A    +F+ I   +  +       Q    D + E  + +      R  A
Sbjct: 233 GMGFQDLHIDTAQGPRWFSRIDIPVRDTTTDRQLVQTVLRD-VTERRLIEEELLAARHSA 291

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  N AKSRFLA++SHE+RTPLN +LG + ++    +          YI  +  SG+ LL
Sbjct: 292 ESSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTRLTK----EQSAYIEALETSGETLL 347

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
            LI+E+LD S++EAG+ ++  + + +  +V   + +L  +A  K++EI   +DP+L   V
Sbjct: 348 LLIDEVLDFSKVEAGKLDIQAAPVRVGALVESVVELLAPKAHAKSLEIGSMLDPNLPEEV 407

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             D   +RQ++ NL+ N +KFT  GG    +        G    I ++D+G G  E E  
Sbjct: 408 TLDATRVRQILYNLIGNGIKFTDEGGVAVELTGRSNPDGGGFLDIDVRDSGIGFDEQEAE 467

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TR 476
            +   F Q          G GLGL IAQ +    GG+   +     G +    LP   + 
Sbjct: 468 RLFQEFEQVDHGPARKFGGTGLGLAIAQRLAGLMGGEIAAQPAGDGGAQFRVSLPIPESL 527

Query: 477 VLNFIP 482
           V +  P
Sbjct: 528 VADTDP 533


>gi|228917320|ref|ZP_04080874.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842310|gb|EEM87404.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 484

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|325103588|ref|YP_004273242.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324972436|gb|ADY51420.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 715

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 7/255 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + A  +   K+ FLA MSHE+RTPLN+ILGFSE +E   +        ++ +  +  + Q
Sbjct: 333 EVAIRQTKIKTDFLAHMSHEIRTPLNSILGFSEQLEKSDLSG----EQRKQLVSVQSASQ 388

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSL 358
            LL+++N+ILDLS++E G+  +          + + +  L++ A +K++++         
Sbjct: 389 ILLSIVNDILDLSKLETGKLNIQSFPFFPRKTIEDIVSTLKIHADKKHLDLLVNYHFDQH 448

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  DE  ++QV++NL++NA+KFT   G V +           I + D G GI +  + 
Sbjct: 449 IQLNGDEYRLKQVVINLVTNAIKFT-KSGSVTINAAINEHCVMRIEVVDTGIGIDKENLK 507

Query: 419 TVLTSFGQ-GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            V   F Q  + +  +   G GLGL I + I+ +  G   + S++ +G +    +P +  
Sbjct: 508 MVFDEFTQILNKSDNNRHNGTGLGLAICKKIIQSQRGFIEVESEIGKGSKFFFEIPYSNC 567

Query: 478 LNFIPEDNHESTQYK 492
              +     ES   K
Sbjct: 568 KEVVQTKETESKITK 582


>gi|167769698|ref|ZP_02441751.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
 gi|167668059|gb|EDS12189.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
          Length = 469

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 146/326 (44%), Gaps = 10/326 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            ++    +  L     + F  V+  +    I  +        G +   +   +     + 
Sbjct: 151 AAMRFAVSLELVDRQIILFILVITLVCIAIIFFVIFSGSYFIGSIVNPVGEVSVTARKIA 210

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
             +      +   D++    +    +++E        +  K+ F++S+SHELRTPL AI 
Sbjct: 211 HGDFNARLTKKNDDEIGELCDTINYMAEE----LSANDRMKNDFISSVSHELRTPLTAIK 266

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G++E +     G ++ E   + +  I    + L  ++ E+LD SRI++GR +L +  + +
Sbjct: 267 GWAETLAD-MGGEVDPEMLAKGMRVITSETERLAGMVEELLDFSRIQSGRMKLVKDRMDV 325

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           I  + E ++M + RA+ +   +        +S   D   +RQV +N++ NA+K++  G  
Sbjct: 326 IAELSEAVLMFEERARHEGKRLIYNEPDQFASFMGDRNRLRQVFVNIIDNALKYSDRGDT 385

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V    +  +   IS+ D G GI E ++P +   F + +   +    G G+GL +A  I
Sbjct: 386 VTVRASVSESQ-VDISVADTGIGIREEDLPKIKEKFFKANSTRR----GSGIGLAVADEI 440

Query: 449 MANHGGQFLIRSKLREGVEVIAILPN 474
           ++ HGG   I SK   G  V   LP 
Sbjct: 441 VSLHGGTLDITSKENVGTRVTIHLPL 466


>gi|51891870|ref|YP_074561.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855559|dbj|BAD39717.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 584

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           AT+++  +  +L+         ++     +A  T+ I                A    + 
Sbjct: 252 ATVIVLATGLSLALIGFLNHQLVARPLAALAGVTRRIGQGRWEVPEEEVRDLRAHQETSP 311

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   +   +      QA   +L  ++        E     E  + +++ F ++M+HE RT
Sbjct: 312 LVDAIQAMSD---ELQALYRNLERKVAERTRQLQEAHADLEALHRSQTEFYSAMTHEFRT 368

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL +I+GFS+++      PL     +E++ DI  S Q LL L+N++LD SR++AG+  L 
Sbjct: 369 PLTSIIGFSQLLLSPGGDPLT-PGQREHLKDILESAQRLLQLVNDLLDASRLQAGQMPLR 427

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
            +A+ L + V+E + +++  AQ++ I +   I   L  V AD+  + Q++LNLLSNA+KF
Sbjct: 428 IAAVDLGEAVQEALAVVRPLAQQREITVTCHIPADLPLVAADDLRVLQILLNLLSNAIKF 487

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV---- 438
           T +GG V +T    S     +S++DNGPGI   +   +   F +G  +      G     
Sbjct: 488 TQVGGEVALTAEARSD-LVQVSVRDNGPGIPPEDHEVIFQLFRRG--SAHERTGGSGLGL 544

Query: 439 ------GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
                           +  HGG+  + S+   G      LP        P
Sbjct: 545 ALAKLL----------VELHGGRIWVESRPGCGSTFHFTLPVHGGEPRCP 584


>gi|312868489|ref|ZP_07728689.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
 gi|311096234|gb|EFQ54478.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
          Length = 450

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDD---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSS 360
            ++L LSRI+    +L     +    +   +        Q +   K  E+ ++   +   
Sbjct: 263 TDLLSLSRIDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIW 322

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   M QVI N+L+NA+K++  GG++ V +  T  +   ISI D G GI + ++P +
Sbjct: 323 VEIDTDKMTQVIDNILNNAIKYSPDGGKIKVGMRTTDAQ-LIISISDEGLGIPKKDLPRI 381

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 382 FDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|270000570|ref|NP_844382.2| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|269850218|gb|AAP25868.2| sensor histidine kinase [Bacillus anthracis str. Ames]
          Length = 465

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 243 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 300

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 301 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIE--RIELI 358

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 359 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 417

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 418 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 465


>gi|215486110|ref|YP_002328541.1| hybrid sensory histidine kinase TorS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264182|emb|CAS08526.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli O127:H6 str. E2348/69]
          Length = 910

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ N AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKANQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAKIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 676


>gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1255

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 6/286 (2%)

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
            L G +A        + Y    +   ++    E+  L  + E+    ++  R+ AE+ N A
Sbjct: 970  LNGTIAHTEVAAVPLLYQNQPAVQVVIRDITERKQLEQQRELLLVAAEVAREEAEQANRA 1029

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            K  F+A +SHELR+PLNAILG++++++  +  P      +  +  I R+ +  + LI ++
Sbjct: 1030 KDEFIAVVSHELRSPLNAILGWAKLLQTRSFEP---AMLRRGLETIERNVETQVQLIEDL 1086

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            LD+SR+  G   L+   ++L+ +V E ++ LQ     K +++          V  D   +
Sbjct: 1087 LDISRMVRGTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGDLHRL 1146

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +Q+  NLL+NA+KFT  GG+V V +    G    I + D G GIA   +P +   F QG+
Sbjct: 1147 QQIFANLLTNAIKFTPAGGQVEVRL-VNCGAQVQIMVIDTGKGIAADFLPYIFDRFRQGN 1205

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
             A +   +G+GLGL I + ++  H G     S    +G      LP
Sbjct: 1206 DAREPQ-EGLGLGLAIVRHLVELHKGTIQAASAGPGQGATFTVTLP 1250


>gi|331266319|ref|YP_004325949.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
 gi|326682991|emb|CBZ00608.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
          Length = 449

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+    +L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNTTSQLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SIKD G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSIKDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|295135579|ref|YP_003586255.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
 gi|294983594|gb|ADF54059.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
          Length = 743

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 138/273 (50%), Gaps = 10/273 (3%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +      L+         ++ AE    AK++FL++++HELRTPL A+ G + ++  E   
Sbjct: 341 RARANGLLQKKNRELTLAKENAERATTAKAQFLSTITHELRTPLYAVTGLTHLLLEE--- 397

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  KE++  +  SG++LL+LIN ILDL+++EA + E+  S+  L   + + +I L+
Sbjct: 398 -NPTPNQKEHLNSLKFSGEYLLSLINNILDLNKLEANKVEIINSSFDLKKRISDVLIALK 456

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----W 395
             A +KN +I    + ++   +  D   + Q+++NL+ N++KFT   G + + VG     
Sbjct: 457 NSADDKNNKIHFDFEKTIPNRLKGDPLKLSQILINLIGNSIKFT-EDGNIWIKVGLLKQV 515

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 +  I+DNG GI++ +   +  +F QGS  I     G GLGL I +++++    +
Sbjct: 516 KDEVLLHFEIEDNGEGISKEKQKAIFENFTQGSTQINRKFGGTGLGLSIVKNLLSLMESE 575

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
             + S L +G +    L    V   +  +  + 
Sbjct: 576 ISLESDLGKGSKFSFDLKFGIVEPALNTEEQQE 608


>gi|228919504|ref|ZP_04082868.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840147|gb|EEM85424.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 463

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAKKVNAIYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIINILNNAYRHSKEHSHINISVT-KEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             A   A  G GLGL I + I+  HGG   + S++  G   I  L
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNISVTSEVNHGSCFIISL 453


>gi|149377684|ref|ZP_01895420.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358037|gb|EDM46523.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 438

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 4/246 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHE+RTPL  I G+ E +            ++  I  + +    
Sbjct: 197 RLYQLEQMRQDFVGNVSHEMRTPLTVISGYLETLVDNADD--LPPKWRRAINTMAQQSSR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI +++ LSRIE G   ++++   L  ++++     +  + ++  E    I      
Sbjct: 255 MEALITDLILLSRIETGEQTINDAVTDLQAMIQQICHDAKALSGDQGHEFNVSI-GDRHL 313

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  DE  +R    NL+ NAVK+T  GG + +        G ++S+KD G GI    IP +
Sbjct: 314 LRGDESQLRSAFSNLIFNAVKYTPAGGLITIIWKTDRDGG-HLSVKDTGIGIDPVHIPRL 372

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +      G GLGL I + ++ NH G   IRS++ +G E     P  R+   
Sbjct: 373 TERFYRADPSRHKETGGTGLGLAIVKHVLLNHDGNLEIRSRIGDGSEFTCHFPRERLAER 432

Query: 481 IPEDNH 486
           +PE   
Sbjct: 433 LPETAS 438


>gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 930

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 15/245 (6%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA +SHE+RTPLNAI+GFS +      G       +EY+  + +S + L++L+N++
Sbjct: 442 KSDFLALISHEIRTPLNAIVGFSALARRTADGV----QLREYVDILDQSSRLLMDLVNDV 497

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD+S++EAG+ +L     +L + V          A  K ++     + +L   +  D   
Sbjct: 498 LDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPPWIQGDPIR 557

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTV 420
            RQ+  NLLSNA+KFT   G V + V       G        + ++D G GI   +I ++
Sbjct: 558 FRQIASNLLSNAMKFT-ESGCVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIEARQIASL 616

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q    I     G GLGL I   ++    G+  + S    G      LP   VL+ 
Sbjct: 617 FQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELPF--VLSS 674

Query: 481 IPEDN 485
            P+  
Sbjct: 675 PPQYE 679


>gi|226225795|ref|YP_002759901.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226088986|dbj|BAH37431.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 423

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 14/395 (3%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL---TIYKSATLLI 147
           ++V  +             L    +  G     +     G                 +  
Sbjct: 32  RQVARALAAETSSQQVLQTLCRLSMFRGRASGAMVTQVSGDNGIYVACSGVATPLLGMTF 91

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            L+ + ++         L   P        A++    +   L   L      F  +   +
Sbjct: 92  PLAGTFINRAAAEKRAVLLPSPHEATPVFAALLPQLGIGPILFLPLVANDQLFGVLA--I 149

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLN 265
            +        + +++ L    ++A     + R  + A+  + AK+  LA++SHELRTPL 
Sbjct: 150 TRDAGHPTFDETDEERLAVMADLAALALWKARLLEDAQSADAAKTSLLATLSHELRTPLT 209

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+ G+ E++E E +GPL++E  ++ I  +   G+HL +LI +IL  + +EA R     SA
Sbjct: 210 ALEGYGELLEDEILGPLSHE-QRDVITRLRTVGRHLGSLIEDILTYASLEADRLTARPSA 268

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L +++      L+  A+EK I+     +  L  +  DE  +RQ++LNL  NA+KFT  
Sbjct: 269 VRLDELLDSLHPFLEPLAREKGIDFVIDPEGGLPGMHTDEAKVRQILLNLCQNAIKFT-E 327

Query: 386 GGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G V + V         G     ++KD G GIA  ++  +   F Q          G GL
Sbjct: 328 SGSVTLRVSRGSPMPDGGVSLRFAVKDTGIGIATADLQRLFRPFSQLEDVPTRRRGGTGL 387

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL IA+ +    GG+  + S+  EG     +LP  
Sbjct: 388 GLYIARRLATLLGGRIEVVSRPGEGSVFTLVLPVQ 422


>gi|296388689|ref|ZP_06878164.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 772

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           AE     A L ++    +E R+ A +   A++ FLA+MSHE+RTPLN +LG   +     
Sbjct: 262 AELKAANARLTLSNHELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGP 321

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L +    L  +V +   +
Sbjct: 322 LTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASL 377

Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L   A    +E+   +DP+L   V  D   +RQV+ NLLSNA+KFT   GRV V V  T+
Sbjct: 378 LSQNAAA-GVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA 435

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                IS++D G GIA+  +  +   F Q    I     G GLGL + + +     G+  
Sbjct: 436 EG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQGELT 494

Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481
           + S +  G      LP   V   +
Sbjct: 495 VESTVGLGSLFSVGLPLAPVSPPL 518


>gi|289433638|ref|YP_003463510.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169882|emb|CBH26422.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 610

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 120/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++ T+  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKYE-NEIEVSIADEGLGVPDEDLATIFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
 gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
          Length = 921

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 9/270 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+     +    E    AE+ N AKS FLA++SHELRTPL  I+G  E+++  T+   + 
Sbjct: 423 ISTRVKMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSHTLPSESA 482

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +  ++ +   LL +I++ILD S+IE+ + ++     S  +IV   I        
Sbjct: 483 ----RLLSAMNNASSLLLKIISDILDFSKIESKQLKIDSKKFSCKEIVLHVISNYLPLIV 538

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
           +K + ++  I+P +  +   D   ++Q+I NLL+NA+KFT  G   + +++  +     Y
Sbjct: 539 KKELGLYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVVITISIKHS---YLY 595

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ISIKD G GI +     +   F Q +   ++  QG GLGL I + ++    G     S+ 
Sbjct: 596 ISIKDTGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLINLMDGDIEFISQQ 655

Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492
             G      LP           +   TQ K
Sbjct: 656 YIGSIFSIRLPLYGAKYHTKAYSKNRTQQK 685


>gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 795

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/280 (35%), Positives = 150/280 (53%), Gaps = 5/280 (1%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259
           +     +    +   +  +  L  + +    L++   E +  AE  N AKS FLA+MSHE
Sbjct: 489 LMESERRLMATVADLRKSRQTLEQQAQQLADLAERYLEQKAEAETANKAKSEFLANMSHE 548

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLNAI+GFSEV++ ET GPL ++ Y +Y  DI +SG++LL +I+++LD+SR+E+GR 
Sbjct: 549 LRTPLNAIIGFSEVMQQETFGPLGSKKYVDYSNDIKQSGEYLLGVISDVLDMSRLESGRV 608

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L +S   L   V   +  ++  A+EK I +  +  P      AD     +++  LL NA
Sbjct: 609 RLQKSEFELDAAVSGALATVEQIAREKEITLVAEAMPGK-RANADRAAFEKILAILLRNA 667

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   GRV V   +       + I+D G GIA      +   F Q   ++ +  +G G
Sbjct: 668 VKFTPKDGRVSVRARFVQ-GALNVYIEDTGIGIAPAAQARLGRPFEQMGGSLDNGMKGSG 726

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           LGL IA+S++  HGG   IRS +  G  V+  LP  R   
Sbjct: 727 LGLAIARSLVDLHGGSMRIRSTVGSGTIVLVHLPQWRDAP 766


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  KS F+ ++SH+LR+PL AILG+ E+IE        N+  +++I  I  S  ++ +L
Sbjct: 415 LDQIKSDFVHTVSHDLRSPLTAILGYVELIER---VGTVNDLQRDFIRRIQVSVHNITSL 471

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++++LDL RIEAG ++  +  ++L  I+R  +   +    EK   +   +     S+ A+
Sbjct: 472 VDDLLDLGRIEAG-FDTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLAN 530

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              MRQ++ NLL NA+K+T  GG++ V++    G      + DNG GI   ++P V   F
Sbjct: 531 PVQMRQMVDNLLDNAIKYTPQGGKIQVSL-RVEGNQLLFQVSDNGIGIPPIDLPYVFDKF 589

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + S A      G GLGL I +SI+  H G+  + S +  G     +LP +
Sbjct: 590 YRASNAAPD-VSGTGLGLAIVKSIVEAHEGRIWVDSAVGTGSTFTVVLPLS 639


>gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
 gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
          Length = 1163

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +S   ++  +A +   A++ FLA +SHELRTP+ A+LG  E++        + 
Sbjct: 614 ITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNES- 672

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  + +   S + L   +N+ILD S+IEA + +L  +   L D +   +   +  A 
Sbjct: 673 ---QLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATAD 729

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + ++      P     V  D   + Q+I NLLSNA+KFT   G + + V   S +    
Sbjct: 730 LQGLDFIVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEK-GSIRICVEQ-SEQHFTF 787

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ E +I ++   F Q   +I     G GLG+ I  +++   GG   + S++ 
Sbjct: 788 EVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEID 847

Query: 464 EGVEVIAILPN 474
           +G  V   LP 
Sbjct: 848 QGTTVRVSLPV 858


>gi|229095302|ref|ZP_04226294.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29]
 gi|228688161|gb|EEL42047.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29]
          Length = 463

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVKGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG  ++ S++  G   I  LP
Sbjct: 409 DKARTRSTGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454


>gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 683

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 10/257 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    E ++ AE+ N  KS FLA MSHELRTPLNAILG S++++   +    ++  +  
Sbjct: 288 REKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNL----SDEQQGQ 343

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  I ++GQ+LL L+N++LD +++EAG+   +E  + L ++V +    + L A +K I++
Sbjct: 344 IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQL 403

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
                 ++   V  D K +RQV++NLLSNA+KFT   G V +T               ++
Sbjct: 404 KFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEK-GYVQLTANCLKKDHKKMTLCFTV 462

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G G+ + ++ ++   F Q +   +    GVGLGL I + ++   GG   +  +   G
Sbjct: 463 KDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTIEPGVG 522

Query: 466 VEVIAILPNTRVLNFIP 482
            E   I+P     +  P
Sbjct: 523 SEFTCIIPFRLQADSNP 539


>gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 1436

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 13/321 (4%)

Query: 175  STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               +   +  LD     + A  +  + +      +             D+ AE E A + 
Sbjct: 760  VLVSAQQLTPLDQQFRHVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADA- 818

Query: 235  SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             +  +  AE    AK RFLA MSHE+RTP+N +LG  E+++   +        K+ +  +
Sbjct: 819  LEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL----EGEQKQMVSLV 874

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
              SG+ LL+++++ILD ++IEAGR ++S +A  L ++    + +L  RA EK++ +   +
Sbjct: 875  QDSGRALLHILDDILDYAKIEAGRLDISPAATDLREVFDGTVGLLASRAHEKSLAVHVTV 934

Query: 355  DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNG 409
               + + V  D   +RQ++ NLLSNA+KFT   G V ++              IS+ D G
Sbjct: 935  AADVPASVSVDSIRLRQILFNLLSNAIKFTDT-GSVRLSAECARVTDDTAHLIISVTDTG 993

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI+     T+   F Q   +      G GLGL I++ +    GG+ ++ S   +G  V 
Sbjct: 994  IGISPAVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESAQGQGTAVT 1053

Query: 470  AIL--PNTRVLNFIPEDNHES 488
              L  P  +    +P+    S
Sbjct: 1054 LELTVPMLKARYALPQLEGRS 1074


>gi|323463222|gb|ADX75375.1| two-component sensor histidine kinase VicS [Staphylococcus
           pseudintermedius ED99]
          Length = 610

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       +      ++       + ++
Sbjct: 371 QQIERERREFVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQ--FLSVTREETERMI 428

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++     +++  +     + + I   ++ A++      + I        
Sbjct: 429 RLVNDLLHLSKMDNETETITKEIVDFNMFINKIINRHEMAAKDT--TFVRDIPRETIFTE 486

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 487 VDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIF 546

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  ++  
Sbjct: 547 DRFFRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEKIEE 604


>gi|296391824|ref|ZP_06881299.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 733

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 159/386 (41%), Gaps = 15/386 (3%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +V    +        R  L   +    +   L  +            ++  + L      
Sbjct: 107 RVERFPLSYQPPGGERRQLGELE----IAIDLAAVYRRLVSGGLASLLWMGSFLCGLAVA 162

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +     L              ++   +     LD +         +    +        
Sbjct: 163 LSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKADRERDEI-DAVAAALEDMRQALR 221

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                  A++D+L  ++E   +     + +AE  + AKSRFLA+MSHE+RTPLN ILG +
Sbjct: 222 TDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMA 281

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++   ++G  +    ++ +  +  +G+ LL ++NE+L  +R+E           SL  +
Sbjct: 282 ELLREASLGERD----RQRLRALATAGEGLLAILNEVLHFARLEEAPDVPEAVDFSLRSL 337

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + + + +L+ RA+E    +   +DP +       E+ +RQV+ NLL NAVKFT   G V 
Sbjct: 338 LEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEA-GEVR 396

Query: 391 VTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           V V             +S+ D+G GI E     +   F QG  A+     G GLGL I++
Sbjct: 397 VRVERLARSVGSERLRLSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGLAISK 456

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            ++   GG+  + S++ +G      +
Sbjct: 457 RLVEALGGRIGVESRVGQGSTFWFEI 482


>gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1197

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 9/272 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               EK     E+        +  ++ +E +  K++F A++SHELRTPL  I   +E + 
Sbjct: 169 RNITEKKQAEDEIARKNDELRKLYEKIKELDELKTQFFANVSHELRTPLTLITHPTEKLL 228

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                P  + + K+Y+  I R+ + LL  +N +LD+S++EAG+ E+  + + +   V   
Sbjct: 229 K---DPTISASSKKYLEVIARNTRGLLKHVNNLLDISKLEAGKMEVQYAMVDVGRTVSLI 285

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               +L A++ N++    I    + + A D   + +VI NL+SNA KFT  GG++ V V 
Sbjct: 286 ASCFELLARDNNLDYSTVIPDGAALMAAIDSDKINRVITNLISNAFKFTPRGGKIRVQVD 345

Query: 395 WT--SGRGQYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            T          +   D+GPG+ E     +   F Q          G GLGL I +  + 
Sbjct: 346 RTTMPSGELAFEVVVSDSGPGVPEHLHAIIFDRFRQVDGGSTRKHGGTGLGLSIVKEFVE 405

Query: 451 NHGGQFLI-RSKLREGVEVIAILPNTRVLNFI 481
            H G   I  SK   G      +P +  ++ +
Sbjct: 406 LHKGTVSISSSKQGTGAVFTIKIPVSPNIDSL 437



 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 30/300 (10%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++   L  +N  +     E      +L++     D+ R    + N  K  FL ++SHELR
Sbjct: 634 FLQEELKSANNDLGELVNELASKKRDLQLLVKQLDQERSLLNQANTHKDEFLMNLSHELR 693

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG+S+V+  E     + +  K  I  I R  +    L+N++LD+S I +G++++
Sbjct: 694 TPLNGILGWSQVLRYEP----DADELKHGIETIERCARAQNQLVNDLLDMSLIISGKFQI 749

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +   I++ +I+   +  L   A+ KN+++   +         D   ++QVI NL+SNA+K
Sbjct: 750 TSEPINISEIIENALESLTFIAKTKNVKLDVDVKQQHFCARGDSTRLQQVIWNLVSNAIK 809

Query: 382 FTAIG-GRVHVTVGWTSGRGQY----------------------ISIKDNGPGIAEGEIP 418
           F+    G V V +  + G   Y                      I + DNG GI+   +P
Sbjct: 810 FSKDSQGAVSVRLSRSDGSDVYGVTGAPADHVKQMMATNKSWALIRVTDNGKGISGEFLP 869

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SK-LREGVEVIAILPNTR 476
            V   F Q   +      G+GLGL I  +I+  HGG      S  + +G     +LP  +
Sbjct: 870 HVFDRFRQADCSSTRHYGGLGLGLSIVNNIVELHGG-ISFAYSDGVGKGASFSILLPIEQ 928


>gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 768

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 9/266 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I   ++++      +++A   + +KS FLA+MSHE+RTPLN I+G  +++E       
Sbjct: 369 EDITAEKISELELIAAKEQALAASKSKSEFLANMSHEIRTPLNGIMGMLQLLEST----D 424

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +    EYI     SG++L +LI +ILDLSRIE G   L     +L  +V + I      
Sbjct: 425 TDSEQTEYIDIALNSGRNLTSLITDILDLSRIEQGYVALENHGFNLNHLVEDVINTFITE 484

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSG 398
              KN+EI   ID S+   V+ D   +RQ+I N+  N+VKFT+  G + +   ++   + 
Sbjct: 485 LTSKNLEIKTSIDKSIPDLVYGDSGRLRQIIFNIFGNSVKFTSR-GCISLTITSLINNNI 543

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I I D G GI E ++  +   F Q   ++     GVGLGL I + ++   GG   I
Sbjct: 544 INIFIEISDTGIGIPEDKLDEIFVPFTQVDGSLTRKYGGVGLGLSIVKKLLLIMGGSITI 603

Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484
            +    G+     +P       I E+
Sbjct: 604 DNNDDGGITTCIAIPFKTTEPPILEE 629


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/269 (37%), Positives = 149/269 (55%), Gaps = 2/269 (0%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L  +   + + +   +    EL +A +     ++RAE  N  KS FLA MSHELRTPL
Sbjct: 499 RRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPL 558

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAILGFSEVI+ E  G L +  Y EY  DIH SGQHLLN+IN IL++S+IE  +  + + 
Sbjct: 559 NAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQ 618

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              LI I+ E I ++   AQ KNI+I +KI   L    AD++ +++++  +LSN++KFT 
Sbjct: 619 NADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKRIIKKILFPILSNSIKFTN 677

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G++ +      G+   I+I D G GI +  +  +   F         +  G GLGL I
Sbjct: 678 NNGKMMIRTSKI-GQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAI 736

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           + ++   HGG+  I S+  +G  V   +P
Sbjct: 737 SDALTNLHGGRLKIISQEGKGTIVTICMP 765


>gi|332528685|ref|ZP_08404662.1| integral membrane sensor hybrid histidine kinase [Hylemonella
           gracilis ATCC 19624]
 gi|332041751|gb|EGI78100.1| integral membrane sensor hybrid histidine kinase [Hylemonella
           gracilis ATCC 19624]
          Length = 611

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 167/449 (37%), Gaps = 22/449 (4%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
            E +  H  +               A +    T   ++  W L+  A     L L     
Sbjct: 18  AEAVREHYRNQPIALFASAATSAFTAVVVAPATPTLVWVSWLLLMYAQVGVRLLLLLAYQ 77

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
                   +  W     VGQ+  GL W    LV   +   E          ++A++    
Sbjct: 78  RGHPDAESMARWGRRSSVGQLVSGLVWGAGALVLNPSGAMEVQLFLTVMIAMLAITAGGA 137

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               L  A    + P ++ L          +       L     FF   +  + +  ++ 
Sbjct: 138 FA-TLRPAFLAFYLPCMLPLPFALFSIGGNIGHVAGLTLLIYTYFFGVFSLRVNRGLLES 196

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +  +  +  L  +L    ++++            KSRFLA+ SH+LR PL+A+  F + +
Sbjct: 197 IRLRLAQTQLAEQLAQRTAVAEAAAAD-------KSRFLAAASHDLRQPLHALALFVDAL 249

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +    GP         + +I +S   + +L + +LD+S+++AG          +  ++ +
Sbjct: 250 KSCVDGPSREA----LVRNIEQSLGAMDSLFHALLDISKLDAGVVRPVWEPFPVQALLDD 305

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            ++     AQ + + +  +  PS + V  D     Q++ NL+SNA+++T  GG V V   
Sbjct: 306 VLLNFSGPAQAQGLRLLVR--PSAAWVRGDRLLCGQMLANLVSNALRYTRQGG-VLVACR 362

Query: 395 WTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                G+        I + D G GIA  ++  V   F Q     +   QG+GLGL I + 
Sbjct: 363 RERRGGRDGRDGGWRIVVLDTGIGIAPEQLDEVFKEFVQIGNPERDRRQGLGLGLAIVRR 422

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I         +RS+   G      LP   
Sbjct: 423 IADLMRMPVHVRSRPGRGSTFGFSLPRAE 451


>gi|83816000|ref|YP_446171.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Salinibacter ruber DSM 13855]
 gi|294508096|ref|YP_003572154.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Salinibacter ruber M8]
 gi|83757394|gb|ABC45507.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Salinibacter ruber DSM 13855]
 gi|294344424|emb|CBH25202.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Salinibacter ruber M8]
          Length = 1076

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 8/303 (2%)

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            +++  +  +     S+   L   L F            VK    QA +     E E   +
Sbjct: 771  ITSFPLEIIPPWYRSIWAYLVYGLGFLGLAYGARRFYIVKEEKRQARRRVQKLERERVVA 830

Query: 234  L-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                +   R  E N  K  FLA+ SHELRTPL  ILG  EV+     G        E++ 
Sbjct: 831  ERLKKANDRLREANRLKEDFLATTSHELRTPLTNILGSLEVLRGMMEGEET-----EFLD 885

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I  +G+ L   +N +LDLS + +G  ++  +  SL + V      L+  A+EK +    
Sbjct: 886  MIEENGKRLKRTLNALLDLSMLRSGEEDVELTPTSLDECVERVASDLRADAEEKGLSFRV 945

Query: 353  KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
             +  +      DE+ + Q++ NL+ NA+K+T   G V V+ G T+    Y  ++D G GI
Sbjct: 946  DLSGAPMWADLDEQYLEQILRNLIENAIKYTDE-GVVAVSTG-TAEGRVYAEVEDTGIGI 1003

Query: 413  AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E  +P +   F Q S       +G GLGL I+  +     G   + ++  +G       
Sbjct: 1004 DEAFLPDLFEEFKQESRGRSRTYEGNGLGLAISARLADQMDGAIRVETEKHKGSRFRVEF 1063

Query: 473  PNT 475
            P +
Sbjct: 1064 PRS 1066


>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 602

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 140/268 (52%), Gaps = 3/268 (1%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           +L+  +E+  L   L       +     A++ NLAKS FL+ MSHELR+PLNA+LGF+++
Sbjct: 193 VLNDISERKLLDQSLRETNVKLESALFLADKANLAKSEFLSGMSHELRSPLNAVLGFAQL 252

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I  ET  P      +  +  I R G +LL LINEILDLS +E+G+  LS   + L +   
Sbjct: 253 I--ETGTPAPTPGQQASLEQILRGGWYLLTLINEILDLSLVESGKLSLSMEPVLLSEKFS 310

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +C  M+  +AQ+  I +      S   V AD   ++QVI+NLLSNA+K+   GG V VT 
Sbjct: 311 DCRAMIDPQAQKAGIRVSFASFDSPCFVEADRTRLKQVIVNLLSNAIKYNRAGGSVEVTC 370

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              +     IS+ D GPG+++ ++  +   F +        ++G G+GL + + ++   G
Sbjct: 371 STPAAGRIRISVIDTGPGLSDNKLAQLFQPFNRLGQ-EAGTQEGTGIGLVVCKRLVEMMG 429

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G+  + S++  G E    L         
Sbjct: 430 GEIGVHSRVGIGSEFWFELKLAAPPPTA 457


>gi|330686045|gb|EGG97668.1| sensor protein SrrB [Staphylococcus epidermidis VCU121]
          Length = 498

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP+  + G++E I    +     +   E +  +    + L  L
Sbjct: 273 LDQMKKDFIANVSHELRTPIALLQGYTESIVDGVVTE--PDEIHESLAIVLDESKRLNRL 330

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    + +    + D++ +  I  + +A +  + +  +++      + D
Sbjct: 331 VNELLNVARMDAEGLSVEKETQPISDLLNKMRIKYRQQATDLELNMQFEVNNQQLWNY-D 389

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + VT          + I D G GIA   +  V   F
Sbjct: 390 MDRMDQVLTNLIDNASRYTQPGDTISVTTD-EDNSYNILRITDTGTGIAPEHLQQVFDRF 448

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + K  +QG GLGL I + I+  HGG   + S++ EG   I  LP 
Sbjct: 449 YKVDASRKRGKQGTGLGLFICKMIIEEHGGIIEVESQVGEGTTFIIKLPK 498


>gi|206563353|ref|YP_002234116.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039393|emb|CAR55359.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 660

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 176/460 (38%), Gaps = 24/460 (5%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
               +T     L   +  + +   L        T       +  I+        ++   +
Sbjct: 50  AAAWLTSFAGGLVATAASVGVIGALWWRDAPLATLLAQAGAFVAISFVECVLVTAVKPLL 109

Query: 94  MNSDIK----------IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
            N  ++             +    +        +            GT     +T +  A
Sbjct: 110 ANDRLREIDDDDGGSYPPHLEPSSVAAAPDDGLLRRVVDASPDAIVGTDAARRITSWNPA 169

Query: 144 TLLIALSISA------LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
              I    +       +   + P  +     P   A     +  + VL +   G    A 
Sbjct: 170 AASIFGIDTTQANGRDIVTMIAPRWLRRHPVPASFADLRAPVGPLDVLCVRPDGGRFRAT 229

Query: 198 SFFTYITYHLFKSNVKILSCQA--EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              + I           L+ +   E+         +   + + R +A+  N  K   LA+
Sbjct: 230 FAASPIVDAQGNCTGLSLTLREAGERRRDERHHLRSLRGARDARVQADASNRLKDELLAT 289

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN I G+ EV+             ++ +  I RS + L +++ ++LD S + 
Sbjct: 290 VSHELRTPLNVIYGWVEVLRN----ADGPGFVQQAVAAIDRSARSLSHMVADLLDASSLA 345

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
            GR  L    + L+ IVR+    L   AQ   + +  +       + AD + +RQV+ NL
Sbjct: 346 TGRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYAMPACVIPADGERLRQVLSNL 405

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA+KFT  GGR++V++   +G    +S+ D G GIA   +P +  +F +   A  S +
Sbjct: 406 LSNAIKFTPPGGRINVSLTR-AGERVRLSVSDTGQGIAPERLPHLFETFSRPEGAFTSPK 464

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           +G+GLGL I ++I   HGG+ +  S     G  V   LP 
Sbjct: 465 RGLGLGLSIVRNIAQLHGGEVVATSAGAGRGTTVTVTLPA 504


>gi|125973031|ref|YP_001036941.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|125713256|gb|ABN51748.1| histidine kinase [Clostridium thermocellum ATCC 27405]
          Length = 440

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 2/237 (0%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E +K  E     K  FL  ++HE +TPL  I    + IE      L +   K+Y+  I +
Sbjct: 160 EQKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTD-RVKKYLNRIKQ 218

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +    + L+N +LD++RIEAG  ++ +  + ++ + R     + + A  K +++    + 
Sbjct: 219 NTFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITESVSMFADLKGVQLLFYSNI 278

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               +  DE+   +++LNLLSNA+KFT     V+V V         I +KD+G GI + +
Sbjct: 279 DKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSA-KEGCVEIKVKDSGIGIPKDK 337

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I T+   FGQ   ++    +G G+GL + +  +   GG+  + S+   G      LP
Sbjct: 338 IKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 394


>gi|256004828|ref|ZP_05429803.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991278|gb|EEU01385.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940734|gb|ADU74768.1| histidine kinase [Clostridium thermocellum DSM 1313]
          Length = 501

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 2/237 (0%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E +K  E     K  FL  ++HE +TPL  I    + IE      L +   K+Y+  I +
Sbjct: 221 EQKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTD-RVKKYLNRIKQ 279

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +    + L+N +LD++RIEAG  ++ +  + ++ + R     + + A  K +++    + 
Sbjct: 280 NTFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITESVSMFADLKGVQLLFYSNI 339

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               +  DE+   +++LNLLSNA+KFT     V+V V         I +KD+G GI + +
Sbjct: 340 DKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSA-KEGCVEIKVKDSGIGIPKDK 398

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           I T+   FGQ   ++    +G G+GL + +  +   GG+  + S+   G      LP
Sbjct: 399 IKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 455


>gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1200

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 130/277 (46%), Gaps = 11/277 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   E R+ A++ N AK+ FL++MSHE+RTP+ AILG  E+   +    L  
Sbjct: 693 ITERKRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLEL--EKEQARLRG 750

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
             + E +   ++S Q L+ L+ + LDL++IEAG   L     +L         + ++ A+
Sbjct: 751 VPFSEALRVAYQSAQELIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFEVTAR 810

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            + +++       +      D   +RQV+ NLLSNA+KFTA  G V +TV          
Sbjct: 811 NQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFTAQ-GEVRMTVECQPDESGLE 869

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS+ D G GI+  +   + T F Q      SA  G GLGL I + ++   GG+  + 
Sbjct: 870 CLRISVADTGRGISSEQQAKLFTPFVQADAMTSSAYGGTGLGLSICRQLVELMGGRIHLL 929

Query: 460 SKLREGVEVIAILPNTRVL---NFIPEDNHESTQYKC 493
           S+   G  V   L   RV       P    E    + 
Sbjct: 930 SEPGVGTVVSLELYLERVSDDFESGPASTQERPPSRS 966


>gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 598

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/413 (27%), Positives = 182/413 (44%), Gaps = 21/413 (5%)

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV-WRIWLLVGQIAIGLCWTLLTLV---- 127
            +     L+V     ++   +M        V   W   + V  +  GL  +LL  +    
Sbjct: 125 LILLGAALSVAVTLFAILFSLMRLFPLPDIVESFWLSSVAVITLVTGLGLSLLPALRMRT 184

Query: 128 -EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM------ 180
                   + +      +    L I       L  A   +   + +AL  +  +      
Sbjct: 185 EAVRGVEHDRIRFLTLLSEQPHLIIVVDGEGRLLSAYGETPPGLDMALLMKHGLITCAHV 244

Query: 181 -SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------IAELEVAKS 233
                L  +L     T  +   ++ +      +++   +     L       +     + 
Sbjct: 245 PHRLGLMQALEAAQDTGRAEAGFMPHAALDHFIRLNLRRGADGKLYGVLSDASLQHARED 304

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +  R+ A+  N  KSRFLA MSHELRTPLNA++GFS+++  +  GPL    Y EY   
Sbjct: 305 ELETARQEAQALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFGPLTG-KYAEYSQL 363

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  SGQH+L+L+N++LD+S+IEA RYELS       + V   + ++   A EK + +   
Sbjct: 364 IWESGQHVLDLVNDVLDMSKIEASRYELSLERFDAREPVSAALRLILATAHEKGVTVKSV 423

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           + P+   V AD++ ++Q+ LNLLSNAVKFT  GG + + +  T      I I D G GIA
Sbjct: 424 LPPTPLEVTADKRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHSIDIQITDTGVGIA 483

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
             ++  +   + Q     + A  G GLGL + Q++   H G+  I S+L  G 
Sbjct: 484 PEDLKRLGKPYEQSGPMEQRAM-GTGLGLSLVQALAGLHRGRMTIESELGVGT 535


>gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
 gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
          Length = 449

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+    +L    I+    +   +      + + QEK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATTQLDVELINFTAFITFILNRFDKMRAQDQEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SIKD G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSIKDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|302061857|ref|ZP_07253398.1| PAS [Pseudomonas syringae pv. tomato K40]
 gi|302132156|ref|ZP_07258146.1| PAS [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 1189

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 20/278 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I++           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 676 ISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGELD 735

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 736 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGLA 791

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT + GRV + +         
Sbjct: 792 RQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPM-GRVKIALQAVDNPDPQ 850

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   
Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910

Query: 458 IRSKLREGVEVIAIL------PNTR--VLNFIPEDNHE 487
           + S+   G  +   L      P TR  V    P   H+
Sbjct: 911 LDSEPGNGTRISMNLLLTTLEPMTRQPVATKPPAAAHQ 948


>gi|226364244|ref|YP_002782026.1| two-component histidine kinase PhoR [Rhodococcus opacus B4]
 gi|226242733|dbj|BAH53081.1| two-component histidine kinase PhoR [Rhodococcus opacus B4]
          Length = 488

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 147/369 (39%), Gaps = 26/369 (7%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  +L      G   T+   +     T   L + +    ++ L    +  + +       
Sbjct: 145 RWRVLTTTAPDGTETTVAMTLTENDETVNRLVVLQLIIGVVVLIALGVVAYFVVRRSL-- 202

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                            ++++        +      +     ++ +  LS     + ++A
Sbjct: 203 ---------------RPLVEVEETAAAIASGDLHRRVPERDDRTEIGRLS--VALNGMLA 245

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +++ A + ++ + + A        RF+A  SHELRTPL  I GF+E+     M       
Sbjct: 246 QIQHAFAATEASEESARRSEEKMRRFVADASHELRTPLTTIRGFAELYRQGAMTDTET-- 303

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +  I      +  L+ ++L L+R++A R  L    + L+ +  + +   +  A E+
Sbjct: 304 ---LMNRIEGEASRMGLLVEDLLMLARLDAQR-PLETRPVDLLSVASDAVHGARAVAPER 359

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +I +  +  P    V  DE  +RQV+ NLL+NAVK T     V V +G T      + + 
Sbjct: 360 SITLDVRPGPGTPEVIGDEARLRQVLGNLLANAVKHTPATADVTVRLGTTE-HSVVLEVA 418

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D GPG+ E +   V   F +   +      G GLGL I  +++A H G   + S+  EG 
Sbjct: 419 DTGPGLTEEDAARVFERFYRTDASRTRESGGSGLGLSIVAALVAAHRGAVTVDSRPGEGA 478

Query: 467 EVIAILPNT 475
                LP +
Sbjct: 479 TFRVELPRS 487


>gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           WV_060327]
          Length = 778

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI E E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPEDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|301058203|ref|ZP_07199253.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447705|gb|EFK11420.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 912

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE          +R +E +  K+ F++++SHELRTPL ++   +E++       L+ + 
Sbjct: 660 ELESTTKDLAAANERLKELDQLKNEFISTVSHELRTPLTSVRALAEILHSNP--DLDADR 717

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y+++ G I    + L  LI+++L+  +I++G+ +   +   + +I+ + ++       + 
Sbjct: 718 YQKFTGIIITESERLSRLIDDVLNFQKIKSGKTQWEFTETDMGEIIEDSVVSTGQLVHDN 777

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISI 405
           +I++   +         D   + QV++NLLSNAVKF     GR+ + +         +++
Sbjct: 778 HIDLTLLLPEEKVYASVDRDRLIQVMINLLSNAVKFCDTDQGRIEIGLSREQ-NLIRVTV 836

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KDNG GI+  +   +   F Q   + K    G G+GL I++ I+  H G+  + S+   G
Sbjct: 837 KDNGIGISAADQEFIFEEFRQIKDSSKRKPFGTGVGLTISRHIIEAHKGKIWVESEPGRG 896

Query: 466 VEVIAILPNTRVLNFI 481
            + +  +P  +  N  
Sbjct: 897 AKFVFTIPVVQDSNAS 912


>gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1680

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K+ F++ +SHELRTPL ++ G   ++    +     ET +  +  + R+   L+ 
Sbjct: 1440 ELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVL-QEEPETVEHMLKIVLRNCDRLIR 1498

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+N+ILDL R+E+G+  L +    + +++ + +  +   A E +I I        + VWA
Sbjct: 1499 LVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTSIS--AYVWA 1556

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEG 415
                + Q + NLLSNA+KF+  G ++ +T    +              S+KD G GI   
Sbjct: 1557 SHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGRGIPTN 1616

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ T+   F Q   +    + G GLGL I QSI+  H G+  + S L EG      +P 
Sbjct: 1617 KLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFTVPL 1675


>gi|122879138|ref|YP_200467.6| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
          Length = 1187

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETRKR-AEEENLAKSRFLAS 255
             ++  +   L  S + +L            +   +  +  + R+R AE+ ++AKS FLA+
Sbjct: 757  PWWLSMAAQLAASVLCMLLLCLGIWARKKRVRRRQEWVLAQQRQRLAEQASIAKSHFLAT 816

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            + HE+RTP+  +LG SE++    +    N   + ++  I  +G HLL L+N+ LDL+RIE
Sbjct: 817  LGHEVRTPMTGVLGMSELLLATPL----NAKQRSHVDAIRNAGTHLLRLVNDALDLARIE 872

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            AG+ EL + A     + +E    +   A  + +    +   P+   V  D   +RQ+++N
Sbjct: 873  AGKLELMQQAFDPAQLAQELADFMHPIADARGLRFLYRNRFPTQLVVLGDATRVRQILIN 932

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-S 433
            LL NA+KF    G V +T+    G      ++D GPGI   +   +   F QG  A   S
Sbjct: 933  LLGNAIKFAER-GDVSLTLSQ-HGETLRFKVRDAGPGIGLEQQKRLFQRFEQGEGARTSS 990

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I Q +     G+  +RS+L  G +    LP 
Sbjct: 991  RYGGSGLGLAICQELTVAMKGRIRVRSRLGVGTQFTVDLPL 1031


>gi|16799393|ref|NP_469661.1| hypothetical protein lin0316 [Listeria innocua Clip11262]
 gi|16412745|emb|CAC95549.1| lin0316 [Listeria innocua Clip11262]
          Length = 610

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|317056869|ref|YP_004105336.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315449138|gb|ADU22702.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 508

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 148/320 (46%), Gaps = 22/320 (6%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
            + ++   +  ++   +    +   +  +  V  +   A+     A+ + +K +  ++  
Sbjct: 173 QIGLIAAVITAIVLGIILLMFFTGMYFIRQIVIPIRGIADITHKYAKGDFSKRIEKKSED 232

Query: 241 R-----------AEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       AEE +     K+ F++S+SHELRTPL AI G++E +        + ET
Sbjct: 233 ELGELCDSINNMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYG---DVET 289

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +K+ +  I+   + L  ++ E+LD SRI+  R  L    I ++  + E +++ Q RA+  
Sbjct: 290 FKKGMRVINSETERLSQMVEELLDFSRIQDNRLMLQMDTIDILAELGETVLIYQERARVL 349

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +       L  V+ D+  +RQV +N++ NA+K++  G  V V   +       IS+ 
Sbjct: 350 GITLNYFEPDMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEA-YEEEGEICISVS 408

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ ++P +   F + +   +    G G+GL +A  I+A HGG   I S+   G 
Sbjct: 409 DTGIGISKEDLPRIKQKFFKANQTRR----GSGIGLAVADEIIARHGGTLTIDSEQGVGT 464

Query: 467 EVIAILPNTRVLNFIPEDNH 486
            V+  LP         E + 
Sbjct: 465 TVMITLPFIEQEERSEESDT 484


>gi|301164109|emb|CBW23665.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis 638R]
          Length = 756

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    E RK AE+  L K  FLA++SHE+RTPLNAI+GFS ++       +  
Sbjct: 508 IEDYKKREQELIEARKMAEKAEL-KESFLANISHEIRTPLNAIVGFSTLLASPDDTDITP 566

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++YI  I+R+ + LL LIN+IL+LSRIE+G          L  ++R+     ++   
Sbjct: 567 EEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALIRDTYQTHKILIP 626

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
            +   + ++ +  L  V  D+  + QVI N L+NA KFT   G + +   +        I
Sbjct: 627 GQLHFLLEEGEKGLI-VHVDKNRLVQVITNFLNNASKFTRE-GSIKLGWSYMPQTEEVEI 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI + E   +   F +         QG GLGL I + I+    G+  +RS+  
Sbjct: 685 YVEDTGIGIPQSEQKIIFGRFYK----QNEFAQGTGLGLSICKLIIEKLQGRLSLRSEAG 740

Query: 464 EGVEVIAIL 472
            G       
Sbjct: 741 TGSHFSIFF 749


>gi|229077963|ref|ZP_04210572.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2]
 gi|228705301|gb|EEL57678.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2]
          Length = 463

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L          +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFFTRIAEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  H G   + S++  G   I  LP
Sbjct: 409 DKARTRSTGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454


>gi|255280496|ref|ZP_05345051.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268961|gb|EET62166.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 395

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 8/323 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK- 213
           +   +   +      + +A     +++  +L + +   +   L      T+++ + N+  
Sbjct: 70  AAARMVPEIRSFLKNMAIAAVLVLVLTASLLIVWIYTGINVPLMKLRKATHNIAEGNLDF 129

Query: 214 --ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                   E  DL  + E  +    E+ +   + +      ++++SH+L+TP+ AI G+ 
Sbjct: 130 TLEAESDDEIGDLCRDFEEMRRRLYESNEEKIQYDRESKELISNISHDLKTPITAIKGYV 189

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E I          E    YI  I+     +  LINE+   S+I+  R   + + I++   
Sbjct: 190 EGIMDGV--ADTPEKMDHYIRTIYNKANDMDRLINELTFYSKIDTNRIPYTFNKINVSSY 247

Query: 332 VRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRV 389
             +C   + L  + KNI+            V AD + M++VI N++ N++K+     GR+
Sbjct: 248 FEDCCEEVGLDLESKNIDFSYFNYVDENVEVIADAEQMKRVINNIIGNSIKYMDKPKGRI 307

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           ++ V    G    I I+DNG GI   E+P +   F +   +  S+  G G+GL I + I+
Sbjct: 308 NIRVK-DVGDFVQIEIEDNGRGIGPKELPYIFDRFYRTDASRNSSMGGSGIGLSIVKKIV 366

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
            +HGG+    SK   G  +  +L
Sbjct: 367 EDHGGKIWATSKPGTGTVMYFVL 389


>gi|89070246|ref|ZP_01157570.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044166|gb|EAR50324.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 552

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 10/284 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L    A +LSF   ++   F +N++++   A +   +A L              EE + A
Sbjct: 257 LVNGTANSLSFEIRLSDRPFLANLQLVRPAAGEARFVAILRDLSER--------EEMDRA 308

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ F++++SHELR+PL +I G   ++     G ++     E +   HR+   L+ ++N+I
Sbjct: 309 KNEFISTVSHELRSPLTSIKGAMGLVLSGAAGEIS-PKAAELVEIAHRNADRLVLIVNDI 367

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL +I AGR E +     L+ I+RE        A+   ++I  +   + +    D   +
Sbjct: 368 LDLEKIAAGRMEFTLERHDLMVILREARAANNAYAERFQVKISVRPPAAPAWANVDADRI 427

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NLLSNA KF+  G  +  TV  T G    +S+ D G GI +  + T+   F Q  
Sbjct: 428 LQVLTNLLSNAAKFSRPGSEILATVS-TEGGRHTVSVTDRGVGIPQEALATIFERFQQVD 486

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +A +G GLGL I ++I+ +HGG   + S   EG  V   L
Sbjct: 487 NPGHNAPRGSGLGLSIVKAIVESHGGSVSVDSTPGEGTTVSFTL 530


>gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 610

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 5/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +E    KS F+ + SHELRTPL + LG S  + LE       E  +E +   H   Q 
Sbjct: 380 RLKEVERLKSEFVMAASHELRTPLTS-LGMSVGLLLEHAVAGLAERDRELLQAAHEEIQR 438

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L++++LDLS+IEAGR EL   ++S+  +      + + + +   + +  ++D +   
Sbjct: 439 MKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSLTAELDAAAPP 498

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD   +  V+ NL+SNA+++   GG + +      G   ++S++D+GPGI       +
Sbjct: 499 VRADANKITWVLTNLISNALRYVGKGGHIALAASVI-GPCAHLSVRDDGPGIPPEFQSKI 557

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F Q          G GLGL I + I+  HGG   + S   +G + I  LP  R
Sbjct: 558 FQKFVQVQG---REAGGTGLGLAICKEIVRAHGGAIWVESAPGQGSKFIFTLPLAR 610


>gi|298242874|ref|ZP_06966681.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555928|gb|EFH89792.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 465

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
              A     +L I L+G +   +   T     L + N+         D++        ++
Sbjct: 169 VLVAGFVAFILAIMLSGTILKPVRALTRAARQLEQGNLTQRVQIRRLDEIGDLAHAFDTM 228

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
           +D      E     + + L++++HELRTPL  I G+ E  + + + P         I  I
Sbjct: 229 AD----SLERSEHLRRQLLSNIAHELRTPLTNIRGYLEAFQDQVITPDPA-----VIASI 279

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           +     L  ++ ++ DL+  EAG+  L    I+L D++ + I  L L+A+ K I     I
Sbjct: 280 YEEAMLLSRMVTDLQDLALAEAGQLRLQRVHIALEDVITKAINALSLQAENKKISFSANI 339

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P+L  V AD + + Q++ NLL+NA+K+T   G V V+      +   +S++DNG GIA 
Sbjct: 340 APNLPLVEADAQRVGQIMRNLLNNAIKYTPEQGEVRVSARALQ-KEIQVSVRDNGMGIAA 398

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +P +   F +   +      G GLGL I + ++  HGG+  + S + +G   I  LP 
Sbjct: 399 EHLPYIFKHFYRADTSRTRETGGSGLGLAIVEQLVCAHGGRITVESYVGQGTCFIFTLPI 458

Query: 475 T 475
            
Sbjct: 459 A 459


>gi|262042771|ref|ZP_06015924.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039838|gb|EEW40956.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 755

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 10/253 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 249 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 304

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 305 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVLEPSLPL 364

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT  GG V+V V +  G   +  ++D+G GI E E 
Sbjct: 365 PHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQ 424

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--P- 473
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +  P 
Sbjct: 425 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQPGKGATFTLTVHAPA 484

Query: 474 -NTRVLNFIPEDN 485
               V N + ED+
Sbjct: 485 IAEEVENTLAEDD 497


>gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B
           str. REL606]
 gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli B str. REL606]
          Length = 778

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|196047270|ref|ZP_03114485.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196021895|gb|EDX60587.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 453

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 148 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 207

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 208 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 263

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 264 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 321

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 322 IWQLTPNAEEKKMQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 379

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 380 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGT 434

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 435 INIISKEGIGTTILIKLPL 453


>gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440]
 gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 785

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     + L ++    ++ R RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTNELKASNSSLSLSNQELEQARSRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALALDNPL----PSEQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
              A  +  +V +   +L     +             SSV  D   +RQ++ NLLSNA+K
Sbjct: 375 ERIAFDMGSMVEDTANLLSQNTAQSVELTCLIASDFPSSVLGDPTRVRQIVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    + ++D G GI E     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVRLAAIVGG-VRLEVRDTGIGIPEDAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L + +++     G   IRS+   G    A LP T     IP  
Sbjct: 493 LALTRNLCKAMQGHLHIRSEPGFGSCFTAELPLTVHTEAIPPA 535


>gi|58426045|gb|AAW75082.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
          Length = 1245

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETRKR-AEEENLAKSRFLAS 255
             ++  +   L  S + +L            +   +  +  + R+R AE+ ++AKS FLA+
Sbjct: 815  PWWLSMAAQLAASVLCMLLLCLGIWARKKRVRRRQEWVLAQQRQRLAEQASIAKSHFLAT 874

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            + HE+RTP+  +LG SE++    +    N   + ++  I  +G HLL L+N+ LDL+RIE
Sbjct: 875  LGHEVRTPMTGVLGMSELLLATPL----NAKQRSHVDAIRNAGTHLLRLVNDALDLARIE 930

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            AG+ EL + A     + +E    +   A  + +    +   P+   V  D   +RQ+++N
Sbjct: 931  AGKLELMQQAFDPAQLAQELADFMHPIADARGLRFLYRNRFPTQLVVLGDATRVRQILIN 990

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-S 433
            LL NA+KF    G V +T+    G      ++D GPGI   +   +   F QG  A   S
Sbjct: 991  LLGNAIKFAER-GDVSLTLSQ-HGETLRFKVRDAGPGIGLEQQKRLFQRFEQGEGARTSS 1048

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I Q +     G+  +RS+L  G +    LP 
Sbjct: 1049 RYGGSGLGLAICQELTVAMKGRIRVRSRLGVGTQFTVDLPL 1089


>gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134]
 gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134]
          Length = 1060

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 162/424 (38%), Gaps = 36/424 (8%)

Query: 71  IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130
                + + + +  A  +L  +      +  E +      +           L  +   G
Sbjct: 326 AIIALTALAICLILALTALHWRSRREMRQNAERWQAFRKNVPA--------GLAYMSPGG 377

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
                     + A L +   +   +   LP            A   +   +         
Sbjct: 378 RVDMANDIYCEFAGLPLHDLLGRNAWTALPDRRVAGICERGHADVLRTGQTHVDEHTLNV 437

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----KRAEEEN 246
                 +           + +  I+       D+  +    ++L +       K AE   
Sbjct: 438 RAHGQRVYRVARFPVR-SRHDAVIMGVGTVVTDISEQERTRQALENLASTLEWKVAERTR 496

Query: 247 LA-------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                          KS+FLA+MSHE+RTPLN I G + +     +G  ++    +Y+  
Sbjct: 497 ELMEARESAEAAARAKSQFLANMSHEIRTPLNGISGMTHL----AIGEPDSGRQGQYLAR 552

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  S QHL  ++N+ILD S++EAG   +  ++  L  ++   + + + + ++K + +  +
Sbjct: 553 IEESCQHLQRIVNDILDFSKMEAGMLAVDAASFPLARLLDHVLSLFREQVRKKGLVLQME 612

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408
           +DP+L   V  D + + Q+++NLL NA+KFT   G + + V   +           + D 
Sbjct: 613 VDPALPLHVIGDSQRIGQILINLLGNALKFTDA-GEIRLRVRACNADDDTVAVRFEVSDT 671

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIAE  +  + + F Q   +     +G GLGL I++ +    GG+  ++S+   G   
Sbjct: 672 GIGIAEDALLVLFSPFHQADSSAARRFEGTGLGLAISKRLAELMGGRITVQSQAGVGSLF 731

Query: 469 IAIL 472
              +
Sbjct: 732 TLEI 735


>gi|295109065|emb|CBL23018.1| diguanylate cyclase (GGDEF) domain [Ruminococcus obeum A2-162]
          Length = 1048

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            + +  K       + A+  N AK+ F+  MSH++RTP+N I+G  ++I        + E
Sbjct: 649 EKEQQEKERLQIAFEEADAANKAKTEFMNRMSHDIRTPINGIMGMVDIIRKNR---NDWE 705

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              + +  I  S +HLL L++++LD+S++EAG +E+ E A  + +++ E   ++  +  E
Sbjct: 706 KVDDSLEKIRLSTRHLLELVSDVLDMSKLEAGMFEIEEDAFDMSELMDEVAALVDAQLVE 765

Query: 346 KNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
             I     + +   +++      +R+++LNLLSNA+K+    G +       S  G    
Sbjct: 766 AGITHHRLRKNIQHTALRGSSLQLRRIMLNLLSNAIKYNKPNGSIDTYAEELSCDGTTVW 825

Query: 402 -YISIKDNGPGIAEGE-IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               I D G G++E      +   F Q     ++  +G GLG+ I ++++   GG   + 
Sbjct: 826 YEFKIVDTGIGMSEEFVRDHLFQPFTQEKNDARTLYKGTGLGMSIVKALLEKMGGCIDVE 885

Query: 460 SKLREGVEVIAILPNTRVLNFI--PEDNHESTQ 490
           S   EG      LP  +V + +   E+ +ES++
Sbjct: 886 SVHGEGSTFTFRLPF-KVNDVLIQKEERNESSE 917


>gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 337

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AK  F++++SHEL+TP++ +    E IE E           +++    +    + +LIN
Sbjct: 115 QAKKDFVSNVSHELKTPISVLKSAMETIEDEIKDS----NILKFVDMAKKRINQMDSLIN 170

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R+E+    + +    L   V +    LQ   ++KNI++   I  +   V+ADE+
Sbjct: 171 DLLILARLESQEDLVKKKKYLLRKQVEDIFEDLQHLTKDKNIKLKNNIPKNF-EVYADEQ 229

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            +   + NL+ NA+K+    G V V    T G+   IS+ D G GI    IP V   F +
Sbjct: 230 KLSIALKNLIENAIKYNVQNGIVEVNAK-TDGKYDTISVIDTGIGIPPESIPLVFERFYR 288

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +      G GLGL I + I   H G+  + S++ +G      +P 
Sbjct: 289 VDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSRFYIKIPK 336


>gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 945

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 137/305 (44%), Gaps = 9/305 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
              A+   A      + +S         + F  +   + +      +    +  L A + 
Sbjct: 486 ATYAIDIGAEQRWFEVSMSAMAGADDRPAHFILLLRDITERKRAEQTLDDYRQGLEAMVG 545

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +  +E  +RAE  N+AKS FLA+MSHE+RTPLNAI+G S +I L  +         E
Sbjct: 546 ERTAQLNEATRRAEAANVAKSAFLANMSHEIRTPLNAIVGMSHLIRLAGL----PPAQTE 601

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  +  HLL ++N ILDLS+I+AG++ L E  + +  I+   + ML  RA+ K++ 
Sbjct: 602 RLDKLKAAATHLLEILNAILDLSKIDAGKFTLEEIPLRVESIIANTLSMLDDRARAKSLR 661

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405
           +  ++D    S+  D   ++Q +LN  +NA+KFT   G V V                 +
Sbjct: 662 LTSEVDRMPRSLVGDPTRLQQALLNYANNAIKFTDA-GSVTVRARLVEQHAEDVLVRFEV 720

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI +  I  + ++F Q   A      G GLGL I + +     G   + S    G
Sbjct: 721 EDTGIGIDDAAIGNLFSAFQQADSATTRRSGGTGLGLAITKKLAELMKGNAGVTSTPGAG 780

Query: 466 VEVIA 470
                
Sbjct: 781 SVFWF 785


>gi|222150272|ref|YP_002559425.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
 gi|222119394|dbj|BAH16729.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
          Length = 612

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 4/229 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHELRTPL ++  + E +E       N      ++         ++ L+N+
Sbjct: 378 ERREFVANVSHELRTPLTSMRSYIEALEEGAWKDENLAPQ--FLSVTREETDRMIRLVND 435

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L LS+++     L++  I     + + I   +  ++ KN    + I  +   V  D   
Sbjct: 436 LLQLSKMDNTDDNLNKELIDFNMFIHKIINRFE-MSEGKNATFIRDIPKNGIFVEIDPDK 494

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           M QV  N+++NA+K++    +V   V   T      I IKDNG GI   ++  +   F +
Sbjct: 495 MTQVFDNVITNALKYSKGRKKVEFHVKQNTLFNRMTIQIKDNGIGIPLNKVDKIFDRFFR 554

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              A      G GLGL I++ I+  H G+    SK   G  V   LP  
Sbjct: 555 VDKARTRKMGGTGLGLAISKEIIEAHNGRIWANSKEGYGTSVYITLPCE 603


>gi|331016191|gb|EGH96247.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1189

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 20/278 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I++           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 676 ISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGELD 735

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 736 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGLA 791

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT + GRV + +         
Sbjct: 792 RQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPM-GRVKIALQAVDNPDPQ 850

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   
Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910

Query: 458 IRSKLREGVEVIAIL------PNTR--VLNFIPEDNHE 487
           + S+   G  +   L      P TR  V    P   H+
Sbjct: 911 LDSEPGNGTRISMNLLLTTLEPMTRQPVATKPPAAAHQ 948


>gi|229114251|ref|ZP_04243672.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3]
 gi|228669271|gb|EEL24692.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3]
          Length = 463

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVIVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG  ++ S++  G   I  LP
Sbjct: 409 DKARTRSTGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454


>gi|254248418|ref|ZP_04941738.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124874919|gb|EAY64909.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
          Length = 685

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL-----ITLAVYAANLS 88
               +T     L   +  + +   L        T       +         L      L 
Sbjct: 69  AAAWLTSFGGGLAATAASVGVIGALWWRDAPLATLLAQAGAFVAIGFVECVLVAAVKPLL 128

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIG-------------LCWTLLTLVEPGTWTPE 135
              ++        + Y             G                         +W P 
Sbjct: 129 ANDRLREIGDDDSDSYPSHREPSSVASLSGDGLLRRVVDASPDAIVGTDAARRITSWNPA 188

Query: 136 YLTIYKSATL-------LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
             +I+   T        +  ++   L    +P +      PV          +      +
Sbjct: 189 AASIFGIDTAQASGRDIVTMIAPRWLRRHAVPASFADLRAPVGPLDVLCVRSNGGRFRAT 248

Query: 189 LAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            A   +  A      ++  L ++       + E+  L      +   + + R +A+  N 
Sbjct: 249 FAASPIVDAQGHCAGLSLTLREAGE---RRRNERHHL-----RSLRGARDARVQADASNR 300

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K   LA++SHELRTPLN I G+ EV+             ++ +  I RS + L +++ +
Sbjct: 301 LKDELLATVSHELRTPLNVIYGWVEVLRNADGQGFA----QQAVDAIDRSARSLSHMVAD 356

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LD S +  GR  L    + L+ IVR+    L   AQ   + +  +       + AD + 
Sbjct: 357 LLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYAMPACVIPADGER 416

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQV+ NLLSNA+KFT  GGR++V++   +G    +S+ D G GIA   +P +  +F + 
Sbjct: 417 LRQVLSNLLSNAIKFTPPGGRINVSLTR-AGERVRLSVSDTGQGIAPEYLPHLFDTFSRP 475

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
             A  S ++G+GLGL I ++I   HGG+ +  S     G+ V   LP 
Sbjct: 476 EGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRGMTVTVTLPA 523


>gi|322387745|ref|ZP_08061354.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
 gi|321141612|gb|EFX37108.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
          Length = 449

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L      ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYEPVAPDFIKVSLNETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + QEK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMRSQDQEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKEDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 KARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|315181473|gb|ADT88386.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii NCTC 11218]
          Length = 1203

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +    + +  A++  L++ RFLASMSHELRTP+  ++G  E++++       N
Sbjct: 614 ISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIR----ETN 669

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  + ++  S  HL  L+N+ILD S++EA + EL      L+  + E + +    A+
Sbjct: 670 EDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHCTAAR 729

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK+++      P  + +V  D   +RQ+I NLLSNA+KFT   G V V +  T       
Sbjct: 730 EKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFT-QSGFVSVDIEVTERDMVM- 787

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D+G G++   + TV   F Q    I     G GLGL I   ++    G   I S+  
Sbjct: 788 NISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITIDSEQG 847

Query: 464 EGVEVIAILP 473
           +G  +   +P
Sbjct: 848 KGTSIQVTIP 857


>gi|255012238|ref|ZP_05284364.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
          Length = 548

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 4/240 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++  EE N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I + 
Sbjct: 8   EKEHIEEMNQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKH 64

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q +  LI+E+LD  + +    +L  S  SL   + E  +     A +K+I    K+   
Sbjct: 65  AQQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQ 124

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +W D+  MR+V+ NLLSNA K     G++++    T  +   I++KD+G GI++ E 
Sbjct: 125 DVFIWIDDWQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQ-VIIAVKDSGNGISKEEQ 183

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F Q     K+   G G+GL + +SI+  H G   + S+L EG   I  LP TR 
Sbjct: 184 ERIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPKTRA 243


>gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1354

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 17/273 (6%)

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            L   +E    +    ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +N
Sbjct: 812  LRKSMEAKLEMERRDKEHREEINQMKMRFFINISHELRTPLTLILAPLQ----EVISKIN 867

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +   +  +  I R+   LL+L+N+++D  R E G +EL     +   ++RE  +     A
Sbjct: 868  DRWARNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKANADRLIRENFLYYDKLA 927

Query: 344  QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + K I      +        D   +  +I NLLSNA K+T  G  + VT+         +
Sbjct: 928  RHKEISYTFHSELEDKEEIFDPHYLELIINNLLSNAFKYTDNGKSITVTLK-EENNWLVL 986

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +   F Q      S   G G+GL + Q ++  H G   + S+  
Sbjct: 987  QVSDTGIGIPMNKQGKIFERFYQVE----SQHIGSGIGLSLVQRLVELHHGHIELESEEG 1042

Query: 464  EGVEVIAILPN--------TRVLNFIPEDNHES 488
            +G      LP          +  + IP +  ++
Sbjct: 1043 KGSTFFVYLPQDPSAYKSSEQADSNIPNEEEQA 1075


>gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
 gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
          Length = 1354

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 17/273 (6%)

Query: 224  LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            L   +E    +    ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +N
Sbjct: 812  LRKSMEAKLEMERRDKEHREEINQMKMRFFINISHELRTPLTLILAPLQ----EVISKIN 867

Query: 284  NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +   +  +  I R+   LL+L+N+++D  R E G +EL     +   ++RE  +     A
Sbjct: 868  DRWARNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKANADRLIRENFLYYDKLA 927

Query: 344  QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + K I      +        D   +  +I NLLSNA K+T  G  + VT+         +
Sbjct: 928  RHKEISYTFHSELEDKEEIFDPHYLELIINNLLSNAFKYTDNGKSITVTLK-EENNWLVL 986

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             + D G GI   +   +   F Q      S   G G+GL + Q ++  H G   + S+  
Sbjct: 987  QVSDTGIGIPMNKQGKIFERFYQVE----SQHIGSGIGLSLVQRLVELHHGHIELESEEG 1042

Query: 464  EGVEVIAILPN--------TRVLNFIPEDNHES 488
            +G      LP          +  + IP +  ++
Sbjct: 1043 KGSTFFVYLPQDPSAYKSSEQADSNIPNEEEQA 1075


>gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 420

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  + L    ++ +      KS F+A+MSHE+RTPLNAI+GFS ++    +     
Sbjct: 169 VTELKNVQRLLTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASGE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   +  + + LL L+N+I DLS+IE+G  +   +   + D++RE   + + +  
Sbjct: 225 EERKMYADILAENNERLLRLVNDIFDLSQIESGTIDFVYTEFDVNDLLRELDGIFKAKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             ++++  +       ++++ + + QV+ NLL NA+KFTA  G +            Y  
Sbjct: 285 NSSVKLICEAHVQPIIMYSERERIIQVLSNLLHNAMKFTAS-GEIRFGCRLEGMEEVYFF 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E E   + + F +         QG GLGL ++Q+I+ N GG   + SK+  
Sbjct: 344 VSDTGIGIPEEEQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSKVNR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
 gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
          Length = 511

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R +A+E +  KS FLA+MSHE+RTPLNAI+GFS +I    +  L
Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVD-L 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  ++Y   I ++  +LL L++++LDLS IE+       +   L  ++ E     + R
Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENR 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
             +  ++    +      +  D   +RQVI +LL NA KFT   G + +    +      
Sbjct: 380 IPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVK-GHIDIGYALSDHGEKI 437

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G GI   +   V   F +    I S  QG GLGL + ++I+   GG   + S+
Sbjct: 438 YVFVADTGCGIPSDQYKKVFERFYK----INSFVQGAGLGLSVCKTIVEGLGGTINVYSQ 493

Query: 462 LREGVEVIAILPNTR 476
           L+EG     ILP  R
Sbjct: 494 LKEGSRFSVILPLNR 508


>gi|256420269|ref|YP_003120922.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256035177|gb|ACU58721.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 368

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 143/355 (40%), Gaps = 10/355 (2%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W++              T    + ++   ++  L N      +       +V+      
Sbjct: 18  LWSMFKAKNLSPQKLAGFTALILSAIITLGTV--LINAPWKIVLIAFLLTFLVSYYLYLY 75

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDET 238
              + +   +  +               F  N+  L    E  + + +     K   D  
Sbjct: 76  TLQNFIYRKIKLIYKFIYQTKASKREEFFNKNILPLKTIEEVSEDVEKWASQKKEELDNL 135

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  E     +  FL ++SHEL+TP+ A+ G+   +    +   N      ++ +  ++ 
Sbjct: 136 RRNEE----FRKEFLLNLSHELKTPIFAVQGYIHTLLDGALEDPNVNKL--FLKNATKNI 189

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPS 357
             L  LI+++ ++S++E+G   ++     + D++++    L L+A  K I+   K    +
Sbjct: 190 DRLCRLIDDLDEISKLESGEMTINAENFVIQDLIKDVFDTLSLKANTKGIKFNVKKGCEA 249

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD++ +RQV++NL+ N++K+    G    ++     +   + I D+G GIAE  +
Sbjct: 250 PIHVLADKEKVRQVLINLVDNSIKYGRTDGHTVASIYVMDDKRVLMEISDDGIGIAEEHL 309

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           P V   F +   A      G GLGL I + I+  HG    IRSK   G      L
Sbjct: 310 PRVFERFYRTDRARSRDIGGTGLGLAIVKHIIEAHGQTINIRSKPEIGSTFGFTL 364


>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 928

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 8/265 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 427 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN----R 482

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 483 LVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRLT 542

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP++   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 543 LYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCR-DGYLEFVVRDT 600

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 601 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 660

Query: 469 IAILPNTRVLNFIPEDNHESTQYKC 493
              +P  +  ++ P   + S Q K 
Sbjct: 661 GVRIPLYKA-HYAPAAINASLQGKT 684


>gi|217978158|ref|YP_002362305.1| integral membrane sensor hybrid histidine kinase [Methylocella
           silvestris BL2]
 gi|217503534|gb|ACK50943.1| integral membrane sensor hybrid histidine kinase [Methylocella
           silvestris BL2]
          Length = 1121

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 160/339 (47%), Gaps = 9/339 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L   +++++  +          ++ ++  +L  +L  A  F          +  +    
Sbjct: 584 YLLAQIYVAYGSLAPTARPIVGTTLWIVFWALIILLGLASWFIVLAHDSRRTAEKEAERQ 643

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                  I   +  +    + ++ AE  NLAKSR++  +SHE+RTPLN+I G+++++E  
Sbjct: 644 ALILTQEIEAHKATQHAMQKAKESAEAANLAKSRYIVGLSHEIRTPLNSIFGYAQLMEGA 703

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +    +      +  I R+ +HL +L++ +LD+SRIE G   LS   + L + + + + 
Sbjct: 704 PIESNADG-----VRIIRRNAEHLASLLDGLLDISRIETGVTRLSWEKVRLPEFLDQIVE 758

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           M + +A+ + +    +   +L   V  D K +RQ+++NLLSNA+K+T   G   + + + 
Sbjct: 759 MFRPQAEAQGLTFIYERPETLPSVVNTDPKRLRQILINLLSNAIKYTPS-GNAALKIRYR 817

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G+   I + D G GI   ++ T+   F +G +    A  G GLGL I + +    G + 
Sbjct: 818 -GQVAEIEVSDTGLGIRADDLETIFEPFERGRMPQARALPGTGLGLTIVRLLTQVMGAEI 876

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            ++S    G + +  +  + V     E +  + Q + YA
Sbjct: 877 TVQSTPDSGSKFLLRILLSEVAQPD-ERSPRAAQIRGYA 914


>gi|46123225|ref|XP_386166.1| hypothetical protein FG05990.1 [Gibberella zeae PH-1]
          Length = 1996

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 19/265 (7%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E    K RFL++MSHE+RTPL  I G    ++  T+    NE   +Y   I  S   
Sbjct: 1325 KLKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQLDYTNTIQTSANS 1380

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L         ++ +   ++   A  K +E+   ++  +  
Sbjct: 1381 LIMIINDILDLSKVDAGMMKLKHEWFHTRSMIEDVNELVSTMAIAKRLELNYLVEADVPA 1440

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNGP 410
             V  D+  +RQV+LN+  NA+KFTA  G V                +      S+ D G 
Sbjct: 1441 WVKGDKVRIRQVLLNVTGNAIKFTAE-GEVFSRCRVYMAEGSSVADNEIMLEFSVIDTGR 1499

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G ++ E   +   F Q   +      G GLGL I++ +   HGG    R+   +G     
Sbjct: 1500 GFSKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGNMTGRATPGKGSTFTF 1559

Query: 471  I----LPNTRVLNFIPEDNHESTQY 491
                 LP       +PE    +  Y
Sbjct: 1560 TARFGLPTAEDHPNLPESPPPTGAY 1584


>gi|332306526|ref|YP_004434377.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173855|gb|AEE23109.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1040

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 135/271 (49%), Gaps = 15/271 (5%)

Query: 212 VKILSCQAEKDDLIAEL-EVAKSLSDE--TRK--RAEEENLAKSRFLASMSHELRTPLNA 266
           + I++     + +  E  + A +  +E    +    ++ +  KS F++++SHE+RTPLN 
Sbjct: 472 IAIIARNVTNERIADEKIKQANAELEEKVAVRTVELQKASRVKSAFISNISHEMRTPLNG 531

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G   +++ + +     +  + YI     S   L  L+N++LDLS+IEAG+ +L   + 
Sbjct: 532 IIGTLNLVKRDPL----TDNQQRYIEMTEVSVNTLSTLVNDVLDLSKIEAGKLDLDFKSF 587

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + I+++      + ++AQEK +E    +      S+ +D     Q++ NL++NA+KFT  
Sbjct: 588 NPINLIESLCGSMAVKAQEKGLEFVIDVSRLDCVSMVSDPHRFSQIMTNLVNNAIKFTEK 647

Query: 386 GGRVHVTV--GWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            G + V+     T      +  +I+D+G GIA+     + ++F Q   +I S   G GLG
Sbjct: 648 -GYIKVSAYTQQTDSGSVVLHCAIEDSGTGIAKENQHKLFSAFSQEDSSIASKHGGTGLG 706

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I + ++    G     S+  +G      +
Sbjct: 707 LSICRQLVTLLNGDVRFESEKNKGSTFYFSI 737


>gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 453

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    +  F+A++SHE+RTPL +I GF+E +     G  + +T +E+ G I    + L N
Sbjct: 213 QLERIRKDFVANVSHEIRTPLTSIRGFAEALHDG--GINDPKTAREFSGIILSHAERLGN 270

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +++++L LS +E G+  +   ++SL   +     +    A++K I    ++     +   
Sbjct: 271 IVSDLLHLSELETGKAIMRYGSVSLSRQIAHIRDVYADHARKKGIRFIVQLPEETLTYET 330

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  M  V+ NL+ NA+K+T  GG V    GW  G      ++D+G GI   E+  +   
Sbjct: 331 DEGKMDLVLGNLVDNALKYTPEGGEVFFG-GWREGDAIVFEVRDSGVGIPRTEVDRIFER 389

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F +   A      G GLGL I + I+    G   + S   +G   +  +P+      
Sbjct: 390 FYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFLVRVPSREPSPS 446


>gi|188577309|ref|YP_001914238.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
 gi|188521761|gb|ACD59706.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1185

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETRKR-AEEENLAKSRFLAS 255
             ++  +   L  S + +L            +   +  +  + R+R AE+ ++AKS FLA+
Sbjct: 755  PWWLSMAAQLAASVLCMLLLCLGIWARKKRVRRRQEWVLAQQRQRLAEQASIAKSHFLAT 814

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            + HE+RTP+  +LG SE++    +    N   + ++  I  +G HLL L+N+ LDL+RIE
Sbjct: 815  LGHEVRTPMTGVLGMSELLLATPL----NAKQRSHVDAIRNAGTHLLRLVNDALDLARIE 870

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            AG+ EL + A     + +E    +   A  + +    +   P+   V  D   +RQ+++N
Sbjct: 871  AGKLELMQQAFDPAQLAQELADFMHPIADARGLRFLYRNRFPTQLVVLGDATRVRQILIN 930

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-S 433
            LL NA+KF    G V +T+    G      ++D GPGI   +   +   F QG  A   S
Sbjct: 931  LLGNAIKFAER-GDVSLTLSQ-HGETLRFKVRDAGPGIGLEQQKRLFQRFEQGEGARTSS 988

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I Q +     G+  +RS+L  G +    LP 
Sbjct: 989  RYGGSGLGLAICQELTVAMKGRIRVRSRLGVGTQFTVDLPL 1029


>gi|299755920|ref|XP_002912146.1| dual-domain HisK/Mak2 protein kinase [Coprinopsis cinerea
            okayama7#130]
 gi|298411441|gb|EFI28652.1| dual-domain HisK/Mak2 protein kinase [Coprinopsis cinerea
            okayama7#130]
          Length = 2334

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 134/280 (47%), Gaps = 16/280 (5%)

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E   +IA    A   + ++R+ A +    KS FLASMSHELRTP ++  G  +++     
Sbjct: 1765 ENLKMIAAQRDALETARKSREDALKATKIKSNFLASMSHELRTPFSSFYGLLDLLS---- 1820

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            G   N    E +    +S + LL +I+ ILD S++EA   +L  S   + +I+ +C+ +L
Sbjct: 1821 GTELNPGQSEIVQTAKQSCELLLKIIDSILDYSKLEASAVKLEPSGFLVENIIADCMELL 1880

Query: 340  QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               A +  +++   I+P +   V+AD   +RQV++NL+ NAVKFTA  G V VT    + 
Sbjct: 1881 LPMAAK-KLDLSFNIEPDVPSWVFADYARIRQVLMNLIGNAVKFTAQ-GYVRVTCSVDNS 1938

Query: 399  RGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                         I+D G G++  ++  +   F Q   +      G GLGL I++ ++  
Sbjct: 1939 TKVVPGEVNLKFEIQDTGIGLSASDVDHLFMPFQQADNSSTRRFGGTGLGLSISRQLVKL 1998

Query: 452  HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             GG   ++S L  G      +P    L   PE    +   
Sbjct: 1999 MGGAIGVQSDLNSGSTFWFTIPVK--LFQSPESQQSAADI 2036


>gi|163797314|ref|ZP_02191267.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177405|gb|EDP61961.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 485

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 2/232 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           NLAKS FLA+MSHELRTPLNAI+GFSE    + +GP+ +  Y++Y  DIH S  HLL ++
Sbjct: 236 NLAKSTFLATMSHELRTPLNAIMGFSEAQAKQLLGPVPS-RYRDYANDIHTSASHLLAVL 294

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILD++R++A R  L E   +    V   + M+    +   I +  +     S++ ADE
Sbjct: 295 NDILDMARMDARRLTLYEEEFNPSKAVDMAVRMIDPDRKRAGIVLSIENRAMGSTLRADE 354

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + +RQ++LNLLSNAVKFT+ GG V V +  ++     +S++D G GI+   +  V   F 
Sbjct: 355 RLLRQIVLNLLSNAVKFTSPGGTVTVALDQSASG-LTLSVRDTGTGISPDLLKRVAEPFF 413

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           Q   +     QG GLGL + +     HGG   I S L EG  V    P  RV
Sbjct: 414 QADQSYARRHQGTGLGLSLVKGFAELHGGSIAIESTLGEGTMVAVRFPAARV 465


>gi|84623383|ref|YP_450755.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367323|dbj|BAE68481.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1187

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 198  SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETRKR-AEEENLAKSRFLAS 255
             ++  +   L  S + +L            +   +  +  + R+R AE+ ++AKS FLA+
Sbjct: 757  PWWLSMAAQLAASVLCMLLLCLGIWARKKRVRRRQEWVLAQQRQRLAEQASIAKSHFLAT 816

Query: 256  MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            + HE+RTP+  +LG SE++    +    N   + ++  I  +G HLL L+N+ LDL+RIE
Sbjct: 817  LGHEVRTPMTGVLGMSELLLATPL----NAKQRSHVDAIRNAGTHLLRLVNDALDLARIE 872

Query: 316  AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374
            AG+ EL + A     + +E    +   A  + +    +   P+   V  D   +RQ+++N
Sbjct: 873  AGKLELMQQAFDPAQLAQELADFMHPIADARGLRFLYRNRFPTQLVVLGDATRVRQILIN 932

Query: 375  LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-S 433
            LL NA+KF    G V +T+    G      ++D GPGI   +   +   F QG  A   S
Sbjct: 933  LLGNAIKFAER-GDVSLTLSQ-HGETLRFKVRDAGPGIGLEQQKRLFQRFEQGEGARTSS 990

Query: 434  AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL I Q +     G+  +RS+L  G +    LP 
Sbjct: 991  RYGGSGLGLAICQELTVAMKGRIRVRSRLGVGTQFTVDLPL 1031


>gi|317152599|ref|YP_004120647.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942850|gb|ADU61901.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 876

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA----ELEVAKSLSDETRKRAEEEN 246
                A+S    +      +  ++     + +D++     EL+V  S  +   +R  E +
Sbjct: 568 VSFLEAVSEQVALAIERKSNEEELTRFSEDLEDMVELRTTELQVQASELESANQRLTELD 627

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEV-----------IELETMGPLNNETYKEYIGDIH 295
             KS  ++S+SHELRTPL +I GF+++           +    +     E  ++ +G I 
Sbjct: 628 TIKSALVSSISHELRTPLTSIRGFAKLTRKEFVRHFLPLAESPLAEAKGERIRQNLGIIE 687

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-IEIFQKI 354
             G+ L  LIN+ LD++RIE+G+   ++  ++  ++V +    L      +  I++   +
Sbjct: 688 TEGERLTRLINDFLDINRIESGKVVWNDQFLNPCEVVHQAANALAGALAARPAIKLKLSL 747

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P++  + AD   ++QV++NLL+NA KFTA  G + ++V         I++ D G GI  
Sbjct: 748 PPTVPLIHADPDKVQQVLINLLNNACKFTAE-GFIKISVTGNVD-SLTITVSDTGMGIGP 805

Query: 415 GEIPTVLTSFG--QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + P +   F   +    + +  +G GLGL I + I+ ++GG   + S L +G      L
Sbjct: 806 EDQPNIFEKFYKARAGDTLVAEARGTGLGLSICKEIVEHYGGSIWVDSTLGQGSAFSFTL 865

Query: 473 P 473
           P
Sbjct: 866 P 866


>gi|229093771|ref|ZP_04224870.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
 gi|228689656|gb|EEL43464.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
          Length = 484

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG    +S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAKSE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
 gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
          Length = 448

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 139/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAI-MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I +   +  +  AG +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIVIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+   G +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELE-YSVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ + E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEEMERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|301301239|ref|ZP_07207394.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851115|gb|EFK78844.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 487

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 140/324 (43%), Gaps = 17/324 (5%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +   ++    F     V++++     ++  +  +  A  L  A +F  ++          
Sbjct: 180 IRRNVVLTVAFAILVGVILSIIIAHFLTKKIARLRNATDLVAAGNFDVHL------DTNG 233

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                    D  + ++  +  ++E +++ E     + +F A  +HE+RTPL  I G  E 
Sbjct: 234 DSELDKLTLDFNSMVQSLRESNEEIKRQEER----RRQFFADAAHEMRTPLTTINGLLEG 289

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +       +  E+ ++ I  +    + L+ L+NE LD  +I +G+ ELS++   ++ ++ 
Sbjct: 290 LA---YDAIPEESKEKSIELMRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLN 346

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             I  L+ +A++   +      P    V+AD   + Q+I N+  NA++FT   G + ++ 
Sbjct: 347 NIIKQLRNKAEQVGDKFEV-YTPDKLMVYADYDRLVQIIFNITQNAIQFT-ENGVISISA 404

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANH 452
                    I I DNG G+ E ++  +   + +   + K +     GLGL I   +M  H
Sbjct: 405 E-KGNEETIIRISDNGIGMNEEQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLH 463

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
            G   + SK  +G       PN +
Sbjct: 464 QGSVTVESKEGKGTTFTLRFPNKK 487


>gi|260061609|ref|YP_003194689.1| sensor histidine kinase [Robiginitalea biformata HTCC2501]
 gi|88785741|gb|EAR16910.1| sensor histidine kinase [Robiginitalea biformata HTCC2501]
          Length = 355

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 145/355 (40%), Gaps = 31/355 (8%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +A  +     F L  A +++ F ++ A     +  +         +LA  +    ++   
Sbjct: 1   MATKLRRSYRFSLRSAFYITLFLILSAGILLYLTDLIDAYWMALPVLAVLVFSIAFLVVQ 60

Query: 207 LF--KSNVKILSCQAEKDDLIAEL----------------------EVAKSLSDETRKRA 242
           +   +   + +    E   L+                            K   D  R R 
Sbjct: 61  IRAERFIYRRIEQIYEDVSLLESTSLTSGPITTDLRTLNEEIENFARAKKIEIDTLRIRE 120

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  FL ++SHEL+TPL  + G+   +    +   + +  ++Y+    +  + L+
Sbjct: 121 E----YRKEFLGNVSHELKTPLFTVQGYIHTLLDGALD--DKKVRRKYLNRAAKGVERLI 174

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            +I ++  ++++E G   L      ++++++    +L+++A  K I +   ++ +    V
Sbjct: 175 YIIKDLDLITKLEVGDLHLEWETFDIVELIQSVFDLLEMKAARKEISLVFDMEYTTPIYV 234

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            AD++ ++QV+ NL+ N++K+    G   V+V         I + DNG GIAE  +  + 
Sbjct: 235 RADKEKIQQVLTNLVVNSIKYGYPKGTTEVSVENLIKNKVIIRVTDNGEGIAEQHLTRLF 294

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             F +   +    E G GLGL I + I+  H  +  + S +  G E    L   +
Sbjct: 295 ERFYRVDKSGSRKEGGSGLGLAIVKHIIEAHNEKIYVESDVDVGSEFSFTLEKAK 349


>gi|295093635|emb|CBK82726.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 454

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            + ++ V+ + +A ++   +    Y+T ++ K   ++ +   +   ++A  E+   +   
Sbjct: 156 FLAAVPVMLVVMAILVCVTIIVTHYLTRNILKPIEQMANSLDDDTHIVAYKEMRPFIDMI 215

Query: 238 TRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            ++ A+  + +  +  F A++SHEL+TPL +I G+SE+IE    G         +  +IH
Sbjct: 216 QKQHADIVKSSQMRQEFTANVSHELKTPLTSISGYSELIET---GMATEADVHHFATEIH 272

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           ++   LL LIN+I+ LS ++          I L  I R    ML + A++ ++ +     
Sbjct: 273 KNSNRLLTLINDIIRLSELDVSEDAPLMEKIDLAVIARTATDMLAINAEKNSVTLSYDGS 332

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                ++A++  M +++ NL  NA+++    G V V+V         + +KD G GI + 
Sbjct: 333 HG--YIYANKMMMEELVYNLTDNAIRYNNKNGSVDVSVKA-EDGKVILRVKDTGIGIPKE 389

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +   F +   +   +  G GLGL I + I+A +  Q  + S+  +G ++    
Sbjct: 390 HQERIFERFYRVDKSRSKSTGGTGLGLAIVKHIVARNNAQLDMDSEPGKGTDIKVTF 446


>gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 936

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 6/303 (1%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + +  +           + A     +  I       + +++  +    D I E +  +  
Sbjct: 634 ALRDALQEGKPSDLEVRVAAGDEVRWARIRGEPQWEDGEVVRIRGTIQD-ITERKQRERA 692

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV--IELETMGPLNNETYKEYIG 292
             E ++ AEE +  KS  LA+MSHE+RTPL +I+GF+E    E + +   ++    +Y  
Sbjct: 693 LREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPKYAE 752

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I +SG+ LL  +  +L+LS++EAG  EL    + L++        L+ RA+EK + +  
Sbjct: 753 LIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVSLQL 812

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           + + + +   AD+ G++ +  NLLSNAVK+T  GGRV +             ++D G G+
Sbjct: 813 ETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYR-EEGAVAFEVEDTGIGM 869

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                  +   F Q S       QG G+GL + +       G   + ++  EG  +   L
Sbjct: 870 DPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWL 929

Query: 473 PNT 475
           P  
Sbjct: 930 PRA 932


>gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium wasabiae WPP163]
 gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 951

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 8/265 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 450 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN----R 505

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 506 LVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLM 565

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P++   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 566 LYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIVFEVGCR-DGYLEFVVRDT 623

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 624 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 683

Query: 469 IAILPNTRVLNFIPEDNHESTQYKC 493
              +P  +  ++ P   + S Q K 
Sbjct: 684 GVRIPLYKA-HYAPMAINASLQGKT 707


>gi|229076179|ref|ZP_04209147.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
 gi|229099150|ref|ZP_04230084.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|229105298|ref|ZP_04235947.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228678224|gb|EEL32452.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228684378|gb|EEL38322.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|228707042|gb|EEL59247.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
          Length = 484

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE++ ++ PS   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVYLQLHPSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVS-SDNDKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 465

Query: 462 LREGVEVIAIL 472
            REG  +   L
Sbjct: 466 PREGTSIFFSL 476


>gi|229118160|ref|ZP_04247519.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
 gi|228665383|gb|EEL20866.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
          Length = 485

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 230 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 287

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 288 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 347

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE++ ++ PS   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 348 LSEEGIEVYLQLHPSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVS-SDNDKV 406

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    S+
Sbjct: 407 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESE 466

Query: 462 LREGVEVIAIL 472
            REG  +   L
Sbjct: 467 PREGTSIFFSL 477


>gi|258514653|ref|YP_003190875.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778358|gb|ACV62252.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 481

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 16/348 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
           +    +   K   +L            L    F+ F    V +          L   LA 
Sbjct: 139 YNLPLILGGKFIGVLQVGQSLVAIETPLSRLRFILFTGSGVTVVLA-----GTLGWLLAR 193

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDE---TRKRAEEEN 246
                +   T     + +++      + +   D+L    E   ++ +      ++ ++  
Sbjct: 194 TALRPIDEITKTASAIQEAHDLNRRIKYDGPGDELARLAETINAMLERLNFAYQKLDQSY 253

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            ++ RFLA  SHELRTPL  I G  E+++   MG    E   E + DI    + +  L+ 
Sbjct: 254 RSQKRFLADASHELRTPLTIIRGNIELLQQ--MGDAEPEIRTEALADISEESRRMSWLVE 311

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R +AG+ ++SE  +SL +++ + I   +  A   N+E         + V+ +++
Sbjct: 312 DLLSLARADAGQ-KMSEELVSLRELLADVIHRAEKLAGPVNLEATNIFVSEDNYVYGNKE 370

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + ++IL LL NA K+T  GG V +     + +   I++ D G GIAE  +  +   F +
Sbjct: 371 YLAKLILILLDNAFKYTEPGGSVLLKTEL-ADKEACIAVIDTGTGIAEENLEQIFERFYR 429

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +  S   G GLGL IA+ I   H  +  ++S L +G E    LP 
Sbjct: 430 IDQSRGSR--GTGLGLSIARWIAEQHDARIEVKSTLGQGSEFTVRLPL 475


>gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
 gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
          Length = 778

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLCFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36]
 gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36]
 gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405]
 gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678]
 gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72]
 gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1]
 gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330]
 gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408]
 gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058]
 gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087]
 gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355]
 gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49]
 gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056]
 gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059]
          Length = 449

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+     L     +    +   +      + + + K  EI +    +   V 
Sbjct: 263 TDLLSLSRIDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N+++NA+K++  GG + V++  T  +   +SI D G GI + ++P +  
Sbjct: 323 IDTDKLTQVIDNIMNNAIKYSPDGGTITVSIKTTDEQ-LILSIADEGLGIPKQDLPKIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   A+ G GLGL IA+ I+  H G    +S+   G     +LP
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 1057

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 24/312 (7%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 296 LRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQKQALLIAQNQLVRN 355

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVK-YAQAILSSN 414

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  +    +++      +  A++K + +        
Sbjct: 415 NDLLALINDILDLSKIEAGHVELADETVVTDSVLQRLRETFEPLARQKGLALEIAAAAGA 474

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D + ++Q++ NLL+NA+KFT   G+V +TV   +    + ++ D G GIA  + 
Sbjct: 475 PAQLVVDNQRLQQILKNLLANAIKFT-EHGKVSLTVQAHAPGRVHFAVTDTGIGIAREQS 533

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP    
Sbjct: 534 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELPTDGA 593

Query: 478 LNFIPEDNHEST 489
              +      +T
Sbjct: 594 PAEVTGPADTAT 605


>gi|312890418|ref|ZP_07749955.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311297188|gb|EFQ74320.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 733

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 20/267 (7%)

Query: 220 EKDDLIAELE----VAKSLSDET-----RKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           E  +LI ++E     AK+  +       + RAE+    K  FL++MSHE+RTPLNA++  
Sbjct: 333 ENYELITKMETLEQQAKAQVERADIIDKKNRAEQAAQVKQEFLSTMSHEIRTPLNAVITI 392

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++     G    +  K+++  +  +  +LL +IN+ILD ++++ G+  L     +   
Sbjct: 393 AALL-----GGKVKKKEKQFVDSLKFAANNLLLIINDILDFTKLDTGKSNLEMRPGNFKV 447

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++       +  A+EK I +F  IDP ++     DE  + Q+I NL++NA+KFT   G +
Sbjct: 448 LLENIKNTYENLAKEKGIGLFLNIDPDVAQSYHLDETKLSQIISNLITNAIKFTDA-GHI 506

Query: 390 HVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + +               IKD G GIA+G +  +  SF Q        + G GLGL I 
Sbjct: 507 DINITKLSTTEETDCLLFEIKDTGTGIAKGHLELIFDSFSQPQTITTRKQGGSGLGLAIV 566

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + ++  HG    + S    G      L
Sbjct: 567 KKLVELHGSTIRVSSVPGTGSVFYFEL 593


>gi|238882125|gb|EEQ45763.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 2471

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 10/264 (3%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
             +L     +  +    E      +  +  AE+    K+ FLA+MSHE+RTP N++L F+ 
Sbjct: 1962 DLLQLFCTQAAVALGKERLLLQMELAKMAAEDATDEKASFLANMSHEIRTPFNSLLSFAI 2021

Query: 273  VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
             +    +      T +EY+  I  S    LN+I+ IL  S+IE G + L  +  SL D +
Sbjct: 2022 FLLDTKLDS----TQREYVEAIQSSAMITLNIIDGILAFSKIEHGSFTLENAPFSLNDCI 2077

Query: 333  RECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               I +         IE+      P +  V  D    RQ+++NL+ NA+KFT   G V +
Sbjct: 2078 ETGIQVSGETILNDQIELVFCNNCPEIEFVVGDLTRFRQIVINLVGNAIKFTTK-GHVLI 2136

Query: 392  TV---GWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +      T  R    +S++D+G GI++     V  +F Q   + +    G GLGL I++ 
Sbjct: 2137 SCDSRKITDDRFEINVSVEDSGIGISKKSQNKVFGAFSQVDGSARREYGGSGLGLAISKK 2196

Query: 448  IMANHGGQFLIRSKLREGVEVIAI 471
            +    GG     S+   G      
Sbjct: 2197 LTELMGGTIRFESEEGIGTTFYVS 2220


>gi|189218172|ref|YP_001938814.1| phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
 gi|189185030|gb|ACD82215.1| Phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
          Length = 439

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 3/231 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
             A+  F+ ++SHELRTPL    G+ E +       L+    K     + +  Q L +LI
Sbjct: 201 EEARKEFVINVSHELRTPLAIFKGYVETLTDNPR--LSKSEVKRIYEILKKHCQRLSSLI 258

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L L+++E+ +  +  + +S+ + + E I  L    ++K   +   I+P L +V  D 
Sbjct: 259 EDLLLLAKLESRKLTIETTPVSIAEFLEETIQDLHPLFKQKECTVNLLIEPDLPTVEIDP 318

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              +Q + NL+ NA+KF+    ++ +       +   + I DNG GI   ++P +   F 
Sbjct: 319 FWFQQAVYNLVDNALKFSIPPRKLVIEAQKI-DQNFVLKIIDNGFGIPSKDLPFIFDRFY 377

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +G  +  S ++G GLGL I + I+  HGGQ    S+  +G  +    P  R
Sbjct: 378 RGDKSRSSEQKGTGLGLSITKQIVELHGGQIRAISEPEKGTTMELTFPLQR 428


>gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 1436

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 15/324 (4%)

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDLIAELEVA 231
            L +    +  +  + L     +      ++       +             D+  E E A
Sbjct: 757  LESVLASARELTPLDLQFRHVSPDGSVRWLHARSIPHREADGRTVWNGYLSDVTTEREQA 816

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +  +  +  AE    AK RFLA MSHE+RTP+N +LG  E+++   +        K+ +
Sbjct: 817  DA-LEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL----EGEQKQMV 871

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              +  SG+ LL+++++ILD ++IEAGR ++S +A  L  +    + +L  RA EK++ + 
Sbjct: 872  SLVQDSGRALLHILDDILDYAKIEAGRLDISPTATDLRAVFDGTVGLLASRAHEKSLTVH 931

Query: 352  QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQY--ISIK 406
              +   + + V  D   +RQ++ NLLSNA+KFT   G V ++   T  +    +  I + 
Sbjct: 932  VDVAADVPASVSVDSIRLRQILFNLLSNAIKFTDT-GSVRLSAQCTYAADDTAHLAICVS 990

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI+     T+   F Q   +      G GLGL I++ +    GG+ ++ S   +G 
Sbjct: 991  DTGIGISAEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESAQGQGT 1050

Query: 467  EVIAIL--PNTRVLNFIPEDNHES 488
             V   L  P  +    +P+    S
Sbjct: 1051 AVTLELTVPMLKARYALPQLEGRS 1074


>gi|27466937|ref|NP_763574.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57865895|ref|YP_190074.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|242243237|ref|ZP_04797682.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251811383|ref|ZP_04825856.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874740|ref|ZP_06283619.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|293367562|ref|ZP_06614215.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672854|sp|Q5HK19|WALK_STAEQ RecName: Full=Sensor protein kinase walK
 gi|81844243|sp|Q8CU87|WALK_STAES RecName: Full=Sensor protein kinase walK
 gi|27314479|gb|AAO03616.1|AE016744_19 two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636553|gb|AAW53341.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|58003339|gb|AAW62232.1| two-component sensor histidine kinase [Staphylococcus epidermidis]
 gi|242233186|gb|EES35498.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251805132|gb|EES57789.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296456|gb|EFA88971.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|291318275|gb|EFE58668.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399898|gb|EFV88144.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           FRI909]
 gi|329728493|gb|EGG64929.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU144]
 gi|329736055|gb|EGG72328.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU045]
          Length = 610

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E    ++       + ++
Sbjct: 372 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--QDKELAPSFLSVTREETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      ++I        
Sbjct: 430 RLVNDLLQLSKMDNESDQITKEIIDFNMFINKIINRHEMAAKDT--TFVREIPQQTIFAE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 488 IDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 548 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 605


>gi|295704138|ref|YP_003597213.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801797|gb|ADF38863.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 476

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           ++ +S       E     +  F+A  SHELRTPL+ +L     +E++     +    K+ 
Sbjct: 228 SRLMSKRAMVPIETAFQKQKEFVADASHELRTPLSVMLSSINALEMQEEVTED-PFSKKL 286

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I ++    + + +L++++L L+R ++ + E +     + D V++ +  ++  A  K+I++
Sbjct: 287 INNMKAEVKRMTSLVSDLLTLARSDSNKVEKAMMLFDITDAVQKVMESVETLAISKHIDL 346

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                P    V  D++ + Q+I  LL NA+K+T   G V++ V    G    + ++D G 
Sbjct: 347 QLVDTPEKLVVTGDQERLTQLIYILLDNAIKYTTPHGNVNIQV-VQHGSECILKVRDTGV 405

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   E   +   F +   +      G GLGL IA+ I+  H G+  + S+  +G     
Sbjct: 406 GIHPDEKDRIFDRFYRADKSRSRQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTV 465

Query: 471 ILPNTR 476
            LP ++
Sbjct: 466 RLPMSQ 471


>gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 511

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I E +  +      R +A+E +  KS FLA+MSHE+RTPLNAI+GFS +I    +  L
Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVD-L 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  ++Y   I ++  +LL L++++LDLS IE+       +   L  ++ E     + R
Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENR 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401
             +  ++    +      +  D   +RQVI +LL NA KFT   G + +    +      
Sbjct: 380 IPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVK-GHIDIGYALSDHGEKI 437

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ + D G GI   +   V   F +    I S  QG GLGL + ++I+   GG   + S+
Sbjct: 438 YVFVADTGCGIPSDQYKKVFERFYK----INSFVQGAGLGLSVCKTIVEGLGGTINVYSQ 493

Query: 462 LREGVEVIAILPNTR 476
           L+EG     ILP  R
Sbjct: 494 LKEGSRFSVILPLNR 508


>gi|269964118|ref|ZP_06178418.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831143|gb|EEZ85302.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1229

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    + +++A+    A+  FLA+MSHELRTPL+A  G  +++  +T    N 
Sbjct: 657 ITEQKEREFALIDAQEKAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQT----NR 712

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E+ KE I    RS  HL  L++E+LD S++EAG+ +++ +  +L+  + + +   + +A 
Sbjct: 713 ESSKELITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPTKTNLVTTLSDVVRSFEPKAV 772

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++      P     +  D   + Q+  NLLSNAVKFT   G + V+V    G+   +
Sbjct: 773 SKGLDYRVTFKPFVNPWLKVDAVRLVQIATNLLSNAVKFT-TDGEISVSVAMNEGQ-LIL 830

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G G+ E ++  +L  F Q    I     G GLGL I   ++   GG   I S+  
Sbjct: 831 KIADTGIGMTETQLDGILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGDLCIDSQFG 890

Query: 464 EGVEVIAILPN 474
            G  ++  LP 
Sbjct: 891 LGTTMVVKLPV 901


>gi|311109196|ref|YP_003982049.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
 gi|310763885|gb|ADP19334.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
          Length = 1111

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 155/390 (39%), Gaps = 13/390 (3%)

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
           A   +L        ++           L  +           +            +  S 
Sbjct: 349 ALIWALLFYFELRVVRPLMNRS--RLALESEHLNRTLIETAPVGLGLIDAASGSPLLHSP 406

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            +    +      F L   +   +       +      +   D+S        ++    +
Sbjct: 407 AMEKMTARVGAGKFSLSAELANRYRRRAGVAAGTRDTDVVEEDLSFVARDGNPVTLSVSM 466

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               ++    +++   +    + E         E +  A+  N AKS FLA+MSHE+RTP
Sbjct: 467 AGARYRGANVVVAAFID----VTEKYQLAQRLREAKAAADRGNAAKSAFLAAMSHEIRTP 522

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+AILG  E++    + P+     +  +  +  S   LL  I+++LD S+IEAG   L +
Sbjct: 523 LHAILGHLELLSRSRLAPV----QRNRLETVRASSGLLLATISDVLDFSKIEAGELSLEQ 578

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKF 382
           +   L+++    + M   +AQ K + +  ++  +L   +  D   + QVI NLLSNA+KF
Sbjct: 579 TEFDLLEVASRALSMFAPQAQAKGLALLGELGAALRLPMRGDATRLGQVIHNLLSNAIKF 638

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G+V + V  T      I ++D+G G+ E +  +V  +F Q    I     G GLGL
Sbjct: 639 TDQ-GQVVLRV-RTDTTSIAIEVEDSGIGMTEEQTQSVFRAFSQADATIGRRYGGTGLGL 696

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +   ++   GG   +RS+   G      L
Sbjct: 697 TLCCRLVEAMGGSLSVRSEPGRGSLFAFTL 726


>gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 1203

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/270 (34%), Positives = 152/270 (56%), Gaps = 9/270 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +      +++AE  N AKS FLA+MSHE+RTPLNAI+GF++++    +    +
Sbjct: 686 ISQQKEQQRALKAAKEQAEIANNAKSEFLANMSHEMRTPLNAIIGFTDLLLKSPL----S 741

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KEY+  + +SGQ LL+LIN++LDLS+IE+G+ +L   ++ LI + ++ + +L+ +A 
Sbjct: 742 EAQKEYMRAVFQSGQSLLDLINDLLDLSKIESGKLDLVFESVDLIKLAKQVVEILKYQAN 801

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K ++    + P L   V +D + +RQV+ NLLSNA+KFT  G     + V    ++   
Sbjct: 802 KKGLDFNLILSPELPPLVLSDGQRLRQVLFNLLSNALKFTERGSVDLDIQVEQHLSAKEV 861

Query: 401 Q-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               S+ D G GIAE     +  +F Q + +I     G GLGL I+  I++  G Q  +R
Sbjct: 862 IIRFSVTDTGIGIAEENREKIFEAFVQENSSIIKRFGGTGLGLTISNRILSLMGSQLKLR 921

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S+   G      L  T V    P +   S+
Sbjct: 922 SETGTGSTFYFDLLLTLVDTDQPSEAERSS 951


>gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 663

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 14/322 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
           P A F       +A     I            + A+  +F            +     + 
Sbjct: 186 PGASFEDLLRSTLARGLIDIGCEDPDRWLDRQLTASKHAFSEIHMRFANGCWMSRRHKRM 245

Query: 220 EKDD------LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
           E ++       I+ L+  ++  ++ R RAE  + AKS FL +MSHE+RTP+N I+GF+E+
Sbjct: 246 ENNETVRIWTDISSLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNEL 305

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +    +    ++T ++Y   I  S + L++LI+EILDL +IE G  E+  +   L  ++ 
Sbjct: 306 LLQGNL----SDTQRDYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLI- 360

Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                LQ  A EK +++      PS +    D + +RQ+++NLL NA+KFT   G V ++
Sbjct: 361 SAARSLQALADEKALQLKVSSTLPSQTIAIGDVERIRQILVNLLGNAIKFTET-GEVTLS 419

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +   +      S+ D GPGIA   +  +   F Q         +G GLGL IA+ +    
Sbjct: 420 ISAENNGLA-FSVNDTGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTELM 478

Query: 453 GGQFLIRSKLREGVEVIAILPN 474
           GG   + S+  EG   +  LP 
Sbjct: 479 GGTITVESERGEGSTFLVWLPL 500


>gi|165870245|ref|ZP_02214901.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167633043|ref|ZP_02391369.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167638329|ref|ZP_02396606.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686406|ref|ZP_02877627.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706128|ref|ZP_02896590.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650820|ref|ZP_02933717.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190566443|ref|ZP_03019361.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218903127|ref|YP_002450961.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815204|ref|YP_002815213.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229599899|ref|YP_002866374.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254734874|ref|ZP_05192586.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|164714133|gb|EDR19654.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167513630|gb|EDR88999.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167531855|gb|EDR94520.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129130|gb|EDS97995.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669482|gb|EDT20224.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172083281|gb|EDT68342.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190562578|gb|EDV16545.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218537300|gb|ACK89698.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227005627|gb|ACP15370.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229264307|gb|ACQ45944.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 459

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 237 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 294

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 295 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIE--RIELI 352

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 353 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 411

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 412 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 459


>gi|313620815|gb|EFR92041.1| sensor protein kinase WalK [Listeria innocua FSL S4-378]
          Length = 610

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERXDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 778

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFTLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
 gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
          Length = 1080

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 11/311 (3%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                        L       ++        L +   K    Q   ++ +   E      
Sbjct: 524 VDFWSRYSKQFYQLGIFALLLIAISLIWGISLSREVNKRKQSQRLLEEQLHLKEALSQEL 583

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +  + +A E   AKSRFLASMSHELRTP+++I+GF E++    + P      KE I    
Sbjct: 584 ENEKNKAIEATKAKSRFLASMSHELRTPVSSIVGFVELLSSSELSP---AQRKEAIALTG 640

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            + Q LL LI +ILD+ +IE+G+Y++      L  ++          A++K I +     
Sbjct: 641 ATAQSLLGLIGKILDVDKIESGKYQVVPQWTDLSQLIELQCHSFDALARQKGITLACVSQ 700

Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410
            P+   V+ D++ +RQ++ NL+ NA+KFT   G +HVT              I+I D G 
Sbjct: 701 LPANERVFVDQQALRQILTNLVGNALKFTEQ-GSIHVTARLMPEGENHGTLTIAISDTGC 759

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+E E   +   + QG       + G GLGL I + ++   GG   + S   +G     
Sbjct: 760 GISEEEQAGLFQRYAQGRCG--RQQTGSGLGLFICKELVTLMGGTLELMSVPLQGTTFTI 817

Query: 471 ILPNTRVLNFI 481
            LP       I
Sbjct: 818 TLPVETARQSI 828


>gi|107103492|ref|ZP_01367410.1| hypothetical protein PaerPA_01004562 [Pseudomonas aeruginosa PACS2]
          Length = 777

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  +P +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 214 AGIEYFWPDSPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 271

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              L+ L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 272 LVMLMAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 325

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 326 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 384

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E         N  K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 385 RKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 440

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          RA+EK +    
Sbjct: 441 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFAL 500

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 501 QLDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 560

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 561 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFL 620

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 621 LRLQLTQPAQGL 632


>gi|52140833|ref|YP_085996.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974302|gb|AAU15852.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 484

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKECIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 1068

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 24/312 (7%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q++ +   AELE      +E  +  E                
Sbjct: 307 LRVANEELEEQSRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQKQALLIAQNQLVRN 366

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L+ E  K Y   I  S 
Sbjct: 367 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVK-YAQAILSSN 425

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLS+IEAG  EL++  +    +++      +  A++K + +        
Sbjct: 426 NDLLALINDILDLSKIEAGHVELADETVVTDSVLQRLRETFEPLARQKGLALEIAAAAGA 485

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D + ++Q++ NLL+NA+KFT   G+V +TV   +    + ++ D G GIA  + 
Sbjct: 486 PAQLVVDNQRLQQILKNLLANAIKFT-EHGKVSLTVQAHAPGRVHFAVTDTGIGIAREQS 544

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G      LP    
Sbjct: 545 EVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELPTDGA 604

Query: 478 LNFIPEDNHEST 489
              +      +T
Sbjct: 605 PAEVTGPADTAT 616


>gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 671

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 16/261 (6%)

Query: 238 TRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            R+RAE      + AK  FLA+ SHELRTPL A  G + +  L+  G       K  +  
Sbjct: 417 ERQRAETALRLASEAKDSFLAAASHELRTPLAAAKGHAHLALLKLGGETEAGPGKS-LKI 475

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+R    +  L+ ++LD+SR++AGR  L      L  +V E    + + +Q   I +   
Sbjct: 476 INRQIDRMAKLVEDLLDISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVE-- 533

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                     D   + QV+ NLLSNA++++  GG V V V      G ++S+ D G GI 
Sbjct: 534 -ASDQLEGTWDRGRLDQVLTNLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIP 592

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS--KLREGVEVIAI 471
           + +   +   FG+   +      G+GLGL I+Q I+  HGG+  + S     EG      
Sbjct: 593 KEKQGLIFERFGRAHGS---KYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGSTFHVW 649

Query: 472 LPNTRVLNF---IPEDNHEST 489
           LP           P+    S 
Sbjct: 650 LPRETEAPTGGVHPDAATRSA 670


>gi|314934942|ref|ZP_07842301.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
 gi|313652872|gb|EFS16635.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
          Length = 610

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       +      ++       + ++
Sbjct: 372 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQ--FLSVTREETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 430 RLVNDLLQLSKMDNESDQITKEIVDFNMYINKIINRHEMAAKDT--TFVREIPQQTIFTE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 488 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 548 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 605


>gi|315301282|ref|ZP_07872500.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
 gi|313630342|gb|EFR98257.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
          Length = 610

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR  L +S ++  D     I   ++  + + I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGRERLEKSFVNFTDFFNHIIDRFEMM-KNETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ E ++ T+  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKYE-NEIEVSIADEGLGVPEEDLATIFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|254470617|ref|ZP_05084021.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
 gi|211960928|gb|EEA96124.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
          Length = 794

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 129/242 (53%), Gaps = 11/242 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLASMSHE+RTPLN +LG +++++   + P        Y+  I  S + L +++
Sbjct: 286 NSAKSTFLASMSHEIRTPLNGVLGLADLLKDTGLKP----EQHRYLDGIISSSEMLRSIL 341

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364
           N++LD S++EAG  EL      +  ++++ + + + +A++K +E+   + P +  +  AD
Sbjct: 342 NDVLDYSKVEAGSLELETVDFKIRQVIKQVVDLTRQQAEDKGLELLIDVHPHVPEILRAD 401

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNGPGIAEGEIPT 419
              +RQV+LN +SNA+KFT   G + ++V     + +      I +KD G G+ EG+   
Sbjct: 402 PTKIRQVLLNFVSNAIKFTNE-GSITISVHIPISQIRRARCLQIMVKDTGVGLPEGDHSY 460

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q + A      G GLGL I++ ++   GG+   ++   +G      +P      
Sbjct: 461 LFEPFVQQNAATNRLYGGTGLGLAISKRLVNAMGGEIGCKANQTQGAVFHFTVPFYEADQ 520

Query: 480 FI 481
            +
Sbjct: 521 TV 522


>gi|298486653|ref|ZP_07004711.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158868|gb|EFH99930.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 547

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 143 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 202

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 203 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 258

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT +G  ++ +    +     
Sbjct: 259 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 318

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 319 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 378

Query: 459 RSKLREGVEVIAIL 472
            S   +G  +   L
Sbjct: 379 DSVPGQGTRISMNL 392


>gi|238062161|ref|ZP_04606870.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
 gi|237883972|gb|EEP72800.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
          Length = 1455

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/439 (22%), Positives = 169/439 (38%), Gaps = 25/439 (5%)

Query: 57   LLVANIGTWFTQNPIFP-MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
            L+ A +G +F  +     M   +T +               +  +G+  + R  + V   
Sbjct: 846  LVDAQLGAFFLADTSDGSMRLRLTASYGYVARGHDVTFGPGEGLVGQAALSRRTIRVSAS 905

Query: 116  AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              G       L          L +     LL  +  ++++ F   +  FL    + + ++
Sbjct: 906  PNGRLTLRSGLANTPPADLVVLPVLFEGELLGVIEFASVAAFPELHLTFLERLVLTIGVA 965

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               I +    +  LA     A       +  L ++N ++        +  A +E      
Sbjct: 966  VNTIQANRRTEELLAQSQRLAH-ELQEQSAELQRTNAELEDKAQLLSEQKANIETQNREI 1024

Query: 236  DETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +  R   E         +  KS FLA+MSHELRTP    L     +  E           
Sbjct: 1025 ELARLGLEDKAQQLTRASAYKSEFLANMSHELRTP-LNSLLLLARLLAENSEQNLTPKQI 1083

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E+   IH SG  LL LI++ILDLS+IEAGR ++  + +   +I          +A+EK +
Sbjct: 1084 EFARTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVQFAEIRGYVEQAFAPQAEEKGL 1143

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----- 402
            +    +   L   +  D + ++Q++ NLLSNAVKFT   G V + +        +     
Sbjct: 1144 DFQVLLAKELPPALVTDAQRLQQILRNLLSNAVKFTDS-GAVTLRIAPAPENVVFDVPAL 1202

Query: 403  --------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++ D G GI++ ++  +  +F Q          G GLGL I++ +    GG
Sbjct: 1203 INARQVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGG 1262

Query: 455  QFLIRSKLREGVEVIAILP 473
               + S   EG      +P
Sbjct: 1263 SITVSSAPGEGSTFTLYVP 1281


>gi|329909928|ref|ZP_08275149.1| sensor histidine kinase/response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546367|gb|EGF31381.1| sensor histidine kinase/response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 500

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/249 (34%), Positives = 130/249 (52%), Gaps = 6/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           IA  E   +     ++ AE  NLAK+RF+  MSHELRTPLN+ILG++++++     P   
Sbjct: 25  IAAHEKTDAELQRAKEAAESANLAKTRFITGMSHELRTPLNSILGYAQILQ---FDPAMP 81

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ I  IHRSG HLL+LI+ +LD+++IEAG+  L    ++L   + + + M    A 
Sbjct: 82  PHRKDAIDVIHRSGNHLLSLIDGLLDIAKIEAGKMRLDTDELALPAFLEQIVQMFAPLAA 141

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK +      D  L   V AD K +RQ+++NLL NA+KFT   G V + + +      + 
Sbjct: 142 EKGLAFAFVCDGRLPGVVRADHKRVRQILINLLGNALKFTDT-GAVTLRLNYVRD-MAHF 199

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SI+D G G+   E   +   F +   A   A  G GLGL I+  +    GG   + S   
Sbjct: 200 SIEDTGIGMTADEAERIFFPFERTVSADLRAAAGTGLGLTISNMLTHIMGGDLTVTSTPG 259

Query: 464 EGVEVIAIL 472
            G   +  L
Sbjct: 260 RGSCFLLKL 268


>gi|306829563|ref|ZP_07462753.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
 gi|304428649|gb|EFM31739.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
          Length = 449

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+    +L    I+    +   +      + +  EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATTQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SIKD G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSIKDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 502

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 255 ITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 310

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 311 EERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 370

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +I+I          ++ D   + QVI+N  +NA+KFT   G + +      +    Y 
Sbjct: 371 SPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPK-GSIEMGYRIEEAKDEIYF 429

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG   + SK  
Sbjct: 430 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGVESKEG 485

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P +  + 
Sbjct: 486 EGSRFWFRIPRSEKIE 501


>gi|229079164|ref|ZP_04211713.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
 gi|228704181|gb|EEL56618.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
          Length = 351

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 151/347 (43%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      +  A  ++  P V  L +        +L  +L G+L
Sbjct: 10  FGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDTVGFVFIILIWTLIGIL 69

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 70  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 125

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 126 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 183 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 240

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 241 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFERFYK 299

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 300 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|163787244|ref|ZP_02181691.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteriales bacterium ALC-1]
 gi|159877132|gb|EDP71189.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteriales bacterium ALC-1]
          Length = 347

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 145/339 (42%), Gaps = 8/339 (2%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
             L      TL   L +S    +       + FFP+V      AI+   V       +  
Sbjct: 12  FALRTALYVTLFTTLLVSVFLYYYYTLNWQVVFFPLVCFPLCFAIVQYRVERFIYRRVKK 71

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                    + +L +  +          ++       K   +  R R E     +  F+ 
Sbjct: 72  IYDDLTLLESTNLRQQPITT-DMGTLTREIDKYARDKKIEIETLRIREE----YRKEFIG 126

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHEL+TPL  + G+   +     G  +N+  ++Y+    +  + L  +I ++  ++++
Sbjct: 127 NVSHELKTPLFTVQGYILTLLEG--GIEDNKIREKYLARASKGVERLTYIIKDLDMITKL 184

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           E G   L++ +  ++ +V+    + +++A +K+I +    +  L   V+AD++ ++QV+ 
Sbjct: 185 EVGDLSLNKESFDMVKLVQNVFDLFEMKAAKKHITLTFDTEYFLPIMVYADKERIQQVLT 244

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ N++K+    G   +++         I + DNG GIA+  +  +   F +   +   
Sbjct: 245 NLIVNSIKYGREQGTTEISIENLIKNKAIIRVTDNGEGIAKANLQRLFERFYRVDKSGSR 304

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E G GLGL I + I+  H  +  + S+L  G E    L
Sbjct: 305 KEGGSGLGLSIVKHIIEAHEEKIYVESELGVGSEFSFTL 343


>gi|17987640|ref|NP_540274.1| histidine protein kinase DIVJ [Brucella melitensis bv. 1 str. 16M]
 gi|17983351|gb|AAL52538.1| histidine protein kinase divj [Brucella melitensis bv. 1 str. 16M]
          Length = 435

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 144/265 (54%), Gaps = 6/265 (2%)

Query: 229 EVAKSLSDE-TRKRAE-EENLA-KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           E  + L DE    +AE E     K R LA++SHELRTPLN+I+GFS+++  E  G L ++
Sbjct: 132 EGEQKLLDEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASD 191

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +EY G IH+SG +LL L+N +LD SR+E G Y ++  +    D V  C  ++  +A++
Sbjct: 192 RQREYAGLIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEK 251

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QY 402
           K ++   ++   +  + AD + ++Q++LNL +NAVKFT  GG V +        G     
Sbjct: 252 KGVDFCHRVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLE 311

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ D G GI   ++  + T F +   +   A++G GLGL + + ++  H G   ++S+ 
Sbjct: 312 FSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRP 371

Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487
            EG  V+  LP         E+  E
Sbjct: 372 GEGTVVMIRLPLAGPQYRAGEEQQE 396


>gi|304379967|ref|ZP_07362696.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304341547|gb|EFM07457.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 608

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++  ++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSTKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|229090988|ref|ZP_04222212.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
 gi|228692389|gb|EEL46124.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
          Length = 444

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 139 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 198

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 199 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 254

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 255 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 312

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 313 IWQLTPNAEEKKMQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 370

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 371 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGT 425

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 426 INIISKEGIGTTILIKLPL 444


>gi|229160973|ref|ZP_04288962.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803]
 gi|228622541|gb|EEK79378.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803]
          Length = 346

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 146/350 (41%), Gaps = 23/350 (6%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLATALSFFTY 202
            L +  ++ AL +F+        +    +  + +  +S  V   IS        +  +  
Sbjct: 1   MLKVTGAVIALFSFLTIIWSIAFYVASSILDALEINVSPFVTFLISDMVGFIFIVLIWIV 60

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----------------KRAEEEN 246
           I   +      ++    E    I + + +  + +E +                       
Sbjct: 61  IGVLMRPKRQAMIWTIIEPIQKITKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELNAME 120

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 121 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 177

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y   +    L   +++ ++  +    +K IE+   ++     + AD++
Sbjct: 178 NLLKLTLLESEEYTPEKVTYRLDQQLKQIVLNSEPLWADKEIELDLDLEK--VHITADQE 235

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +     +   I I D+G GI+E +   +   F +
Sbjct: 236 SMSQVWINLIHNSIKFTPSGGTITIQL-QEHEKFVEIRIHDSGIGISEEQKQHIFERFYK 294

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +      G GLGL I + ++  H G+  + S+   G E I  +P  +
Sbjct: 295 ADSSRNRTYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIPKYK 344


>gi|217958236|ref|YP_002336782.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229137450|ref|ZP_04266061.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
 gi|217065748|gb|ACJ79998.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228646008|gb|EEL02231.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
          Length = 463

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKEATSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +H++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEYSLIHISVT-EEHKSISITIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|301308442|ref|ZP_07214396.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833912|gb|EFK64528.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 287

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 12/242 (4%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +  +++AEE +  KS FLA+M+HE+RTPLNAI+GFS+V+  E     + ET  E+   I
Sbjct: 53  LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRLEFSNII 108

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + + L  LI ++LDLS+IE+    L    + +  +++E   M+ LR     IE+    
Sbjct: 109 QSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPS-GIELRLND 167

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +L  + AD+  + Q++ NLL+N++K T   G +      T+   ++  ++D+G GI  
Sbjct: 168 CEALV-MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFF-VEDSGEGIPR 224

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +I ++ + F Q         +GVGLGL I + ++   GG+  + S+L +G      LP 
Sbjct: 225 DKIDSIFSRFVQLDSW----SKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLPL 280

Query: 475 TR 476
            R
Sbjct: 281 IR 282


>gi|293365511|ref|ZP_06612220.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307703469|ref|ZP_07640411.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315613221|ref|ZP_07888131.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
 gi|291315879|gb|EFE56323.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307622876|gb|EFO01871.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315314783|gb|EFU62825.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
          Length = 449

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+    +L    I+    +   +      + +  EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNTTSQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SIKD G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSIKDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 570

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 323 ITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 378

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 379 EERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 438

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +I+I          ++ D   + QVI+N  +NA+KFT   G + +      +    Y 
Sbjct: 439 SPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPK-GSIEMGYRIEEAKDEIYF 497

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG   + SK  
Sbjct: 498 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGVESKEG 553

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P +  + 
Sbjct: 554 EGSRFWFRIPRSEKIE 569


>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1130

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 152/353 (43%), Gaps = 6/353 (1%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W L+  +           + K     +  +I  +    L  +  ++   + +  +++ +
Sbjct: 333 TWALVVELPEKEAFARIHQLEKIFFAAMLTAIVLVILAALWLSNSITAPLLRLTWASERV 392

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            +  +            +         +  S  + +S  ++++    ELE    +  +  
Sbjct: 393 SAGDLEQKIEGTERKDEIGRLATSFARMQCSIREKMSLISKQNQ---ELEKNIHVIKQQN 449

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
              +  +  K  FLA+ SHELRTPL+ ++G +E +     GP+     +  +  +  SGQ
Sbjct: 450 DDLQTADKLKDEFLATTSHELRTPLHGMIGIAESLLAGANGPMQGA-QRRQLEMLINSGQ 508

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NL++++LD  ++  G  ++ + A+ L   VR  + +       K + I  +I   L 
Sbjct: 509 RLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRIINQIPADLP 568

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V ADE+ + QV+ NL+ NA+K+T+  G++ ++      +   I + D G GI   ++  
Sbjct: 569 LVQADEQRLEQVLYNLVGNAIKYTSE-GKIVLSATVLENQ-VRIQVVDTGQGIPAEQLEH 626

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +     Q +    +  QG GLGL I++ ++   GG+  + S+   G      L
Sbjct: 627 IFEPLVQANTNHANYRQGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFSFTL 679


>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1474

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + +         +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELREH---ETLSPKGVQYVELMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   ++V       ++ ++E  +    ++  +   +WAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNELVVSFQKEFRVLSEENEVSFTFQLPDAAIMIWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSF 424
            + +  VI N++SNA KFT  GG +HV  G           ++DNG GI + ++  V   F
Sbjct: 1059 EKLSIVIRNIISNAFKFTPSGGSIHVVAGLAEDGEHCFLRVEDNGIGIPQNKLTEVFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG  A  S  QG G+GL +++ I+  H G     S   +G   I  L
Sbjct: 1119 SQGENAKNSYYQGTGIGLALSKEIVNLHHGVIRAESPEGKGTVFIVEL 1166


>gi|239616952|ref|YP_002940274.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505783|gb|ACR79270.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 456

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 140/318 (44%), Gaps = 21/318 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQA 219
            ++ + F P+ + ++        +    LA      +   T +   +  +   + L    
Sbjct: 154 RSLLVIFIPLTLIIA-------SIGSYLLAKKTLKPIDRITNLAREINAEKIDRRLDIDL 206

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D+L    +    + D    R E    ++ +F A+ +H+LRTPL +I G  +V      
Sbjct: 207 PDDELGRLSKTFNQMLD----RLENALNSQKQFSANAAHDLRTPLTSIKGIIDVTLNRER 262

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L    YK+ +  I +  + +  L++ +L ++R ++   +L +  I L +++   +  +
Sbjct: 263 DAL---EYKDSLIQIRKQVERMSKLVDTLLIVARFDSKAIKLHKEKIDLTELLEVVVEQM 319

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           Q  A  K I +   +  +L ++  D   + ++ LNL+ NA+K+   GG+V VT   +  +
Sbjct: 320 QYAANRKGIILKADLQDNL-TIVGDFDLVVRLFLNLIDNAIKYNQPGGQVTVTAKLSEKK 378

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  +SI D G GI E E+  +   F +   +     +G GLGL I + I   H  +
Sbjct: 379 KGLKHVLVSICDTGQGIPENELERIFDKFYRIDKSRSR-VEGAGLGLSIVKEIALAHNAE 437

Query: 456 FLIRSKLREGVEVIAILP 473
             ++S+L +G   I   P
Sbjct: 438 IQVKSQLGKGSIFIVKFP 455


>gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           VA-6]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|296392537|ref|YP_003657421.1| integral membrane sensor signal transduction histidine kinase
           [Segniliparus rotundus DSM 44985]
 gi|296179684|gb|ADG96590.1| integral membrane sensor signal transduction histidine kinase
           [Segniliparus rotundus DSM 44985]
          Length = 569

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 140/335 (41%), Gaps = 21/335 (6%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-------- 215
             S   + +A+ T  ++ + +    L       L         +   +++          
Sbjct: 239 LSSLLTLQLAIGTGVLLVLGLAGYFLVRWSLRPLVEVERTANQIAAGDLERRVPDWGERT 298

Query: 216 ---SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                    + ++A+++ A + +  + ++A+       +F+A  SHELRTPL A+ GF+E
Sbjct: 299 EVGRLSKALNSMLAQIQHAFAATLASEEKAKSSERRMRQFVADASHELRTPLTAMRGFAE 358

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +                 +  I      +  L+ ++L L+R +  R  L +  + ++ ++
Sbjct: 359 LHRTGAGVSTTIA-----MSRIESEAIRMGKLVEDLLVLARTDEER-PLEKEPVDMLQLM 412

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + +   +  A  + I    +       V  D+  +RQV+ NL+SNA+  T     V ++
Sbjct: 413 TDAVHDAKAIAPSRTIRFEFQPSGGAPVVLGDDASLRQVLSNLVSNALLHTGEDATVTLS 472

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +G  +     + + D GPG+A  +   V   F +   +   +  G GLGL I  +I+  H
Sbjct: 473 LGGDAHD-VLVEVCDTGPGLAPEDAERVFERFYRVDPSRTRSSGGSGLGLAIVNAIVRAH 531

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           GG   +RS+L  G  +   LP    L   PE++ E
Sbjct: 532 GGHASVRSELGVGTTLRVTLPR---LAAGPEEDDE 563


>gi|228935979|ref|ZP_04098789.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823747|gb|EEM69569.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 484

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             +++IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKESIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|219847392|ref|YP_002461825.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541651|gb|ACL23389.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 490

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 12/309 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-----I 225
           +  L T  I+   +  +                   + ++   I+  +     +      
Sbjct: 179 LATLQTILIIGGVMATLVTGMGSMYLSKRALRPIEQITQTAQSIVRAEDLGRRIPEPVQR 238

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E+       +E   R E     + RF+A +SHELRTPL  + G  EV+E       +  
Sbjct: 239 DEIHQLTVTINELLSRLERLFSTQQRFVADVSHELRTPLTVMQGNLEVLERGA--STDPA 296

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KE +GD+ R    L+ ++N++L L++ E     L    + L  ++ E    L+  A +
Sbjct: 297 LVKEMVGDMRRETARLIRMVNDLLLLAQSETN-VVLRSEPVELDTLLLEVFRELRPLANQ 355

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + I          V+ D   ++Q +LNL  NA+++T  GG V +++     +   +S+
Sbjct: 356 VRLRI---GAEDQILVYGDRDRIKQALLNLGVNALQYTPPGGLVILSLERYE-QFACLSV 411

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI+E E   +   F +   +      G GLGL I + +   HGG   + S++  G
Sbjct: 412 ADTGIGISEAERDLIFERFYRVDRSRSRHSGGTGLGLSIVKWVAEAHGGYVTVASEVGRG 471

Query: 466 VEVIAILPN 474
                 LP 
Sbjct: 472 STFAIYLPL 480


>gi|116873948|ref|YP_850729.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742826|emb|CAK21950.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 459

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L ++   
Sbjct: 223 DSFAKMASE----LEKSETARQEFVANVSHELQSPLTSMQGFARLLSS---GTLTDKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETARLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I  ++     +   D + + QV  NLL+NA+KFT   G + V + +      ++ ++DN
Sbjct: 336 TINLELAD--VNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQVRL-YEKATNVFVEVQDN 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+A H G+ +++S   +G   
Sbjct: 393 GVGISKTDMAKIFERFYKSNQSRTREEGSSGLGLSICQKIIALHHGEIIVKSTPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|223043418|ref|ZP_03613464.1| sensor protein YycG [Staphylococcus capitis SK14]
 gi|222443207|gb|EEE49306.1| sensor protein YycG [Staphylococcus capitis SK14]
          Length = 610

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       +      ++       + ++
Sbjct: 372 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQ--FLSVTREETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 430 RLVNDLLQLSKMDNESDQITKEIVDFNMYINKIINRHEMAAKDT--TFVREIPQQTIFTE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 488 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 548 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 605


>gi|320528446|ref|ZP_08029608.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Solobacterium moorei F0204]
 gi|320131360|gb|EFW23928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Solobacterium moorei F0204]
          Length = 489

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 133/317 (41%), Gaps = 12/317 (3%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQ 218
            V+ +  P+     T ++   ++  I L  +L      +  I   L    +S   +   +
Sbjct: 177 MVYSNITPISTTKKTLSMQMWYISAIILVAVLVLTYIMYRTIARPLILINQSAKTLPEGK 236

Query: 219 AEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            E+       E E          +  ++ + AK   +A++SH+LRTPL  I G+ E+++ 
Sbjct: 237 YERVTVQNYREAEELNDTLLTAAEDIQQADKAKRDLIANVSHDLRTPLTMISGYGEMMKD 296

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                L  E   E I  I    + L  L+N++LDLS+++  +  L +    L +++   +
Sbjct: 297 -----LPEEKTDENIQVIIDESKRLTALVNDLLDLSKLQEEKIHLEKENFDLTNVLHTQL 351

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
               +   ++   I  ++    + + AD K + QV  N ++NA+ ++     + V     
Sbjct: 352 QKYDVYHMQEGFTIDTELSAE-AIISADIKRIEQVFNNFMTNAINYSGDKKHIIVR-EIL 409

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 + I+D G GIA+ +I  +   + +          G G+GL I + I+  H  ++
Sbjct: 410 ENDKVRVEIQDFGEGIAKDDISKIWDRYYKIDKEHVRVSNGSGIGLAIVKEILELHNAKY 469

Query: 457 LIRSKLREGVEVIAILP 473
            + S L EG       P
Sbjct: 470 GVISNLGEGSTFWFEFP 486


>gi|256828469|ref|YP_003157197.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577645|gb|ACU88781.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 627

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 14/353 (3%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML--ATALSF 199
              +L   +I AL        +F     + +      +  +   ++     L        
Sbjct: 144 FLEILFGEAIVALLMASALLFLFHRQVGMHLHALAARVRDISPANLEQPIALCKRYRDDE 203

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +T  L K    +L    +  + + E  +A+S   + +++AE    AK++FLA+MSHE
Sbjct: 204 LDQVTASLEKMRRGLLDAFTKLSEEVEERRIAESRLSQAKEQAESATQAKTQFLANMSHE 263

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+N I+G  E+    +    +    ++Y+    RS + LL L+N+ILDLSR+EA R 
Sbjct: 264 IRTPMNGIMGMLELAMDNS----DPAVMQKYLQTAMRSSRSLLRLLNDILDLSRLEASRM 319

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSN 378
            + E   ++ +++ E     Q    ++ + +   +D +    +  D   +RQ++ NL+ N
Sbjct: 320 PVVEEPFNIRELMEELTDSFQAVVLDRGLALRSTVDENVPPFLLGDSVRIRQILTNLIGN 379

Query: 379 AVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           AVKFT   G+V + V       +     YI ++D G GI +     +   F Q       
Sbjct: 380 AVKFTLR-GKVEIRVSSLTPARSGAHRIYIEVEDTGVGIPDQAQTGLFAPFAQADSTQTR 438

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             +G GLGL I Q ++   GG     S    G      LP        P    
Sbjct: 439 KFEGSGLGLSITQQLVVLLGGSLAFESSP-HGSLFAVCLPLHPATQQPPRHEP 490


>gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 951

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 8/265 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 450 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN----R 505

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 506 LVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLM 565

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P++   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 566 LYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIVFEVGCR-DGYLEFVVRDT 623

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 624 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 683

Query: 469 IAILPNTRVLNFIPEDNHESTQYKC 493
              +P  +  ++ P   + S Q K 
Sbjct: 684 GVRIPLYKA-HYAPMAINASLQGKT 707


>gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 958

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 133/233 (57%), Gaps = 4/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  KSRF++ +SH+L++PL AI G+++++    MG + NE  ++ +  + R+   +  
Sbjct: 730 ELDQIKSRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTV-NEMQRDALQAVVRNTGAMTA 788

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI+++LDL +IEAG   +S     L  ++RE I  L+LRA+   I +  +I PSL  V A
Sbjct: 789 LISDLLDLGKIEAG-IGISPQETDLAVVLREVIDELKLRAKMGQISVQPEIPPSLPLV-A 846

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   MRQV  N+LSNA+K+T  GG+V +          ++ I+D+G GI E  +P +   
Sbjct: 847 DPSRMRQVFTNILSNAIKYTPSGGQVQIRAN-NGDAKMHVQIQDSGLGIPEDSLPHIFER 905

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +    I S  +G GLGL I +SI+  HGG   ++S + EG      LP  +
Sbjct: 906 FYRVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLPQHK 958


>gi|16801788|ref|NP_472056.1| hypothetical protein lin2727 [Listeria innocua Clip11262]
 gi|16415263|emb|CAC97953.1| lin2727 [Listeria innocua Clip11262]
          Length = 459

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + + N  +      KD++    
Sbjct: 163 IFFAMILVFTSIISILFVLISGRYIVKPVVKLTNATKKIRRGNYDVALEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +  K
Sbjct: 223 DSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQK 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I  ++     +   D + + QV  NLL+NA+K+T +GG + V + +      ++ + ++
Sbjct: 336 TINLELAD--INYSGDAELLYQVWSNLLNNAIKYTPLGGNIQVRL-YEETTNVFVEVWNS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + S +    E   GLGL I + I+  H G+  + S   +G   
Sbjct: 393 GAGISKEDMAKIFDRFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTDKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 KVKLPK 458


>gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 541

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 294 ITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 349

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 350 EERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 409

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +I+I          ++ D   + QVI+N  +NA+KFT   G + +      +    Y 
Sbjct: 410 SPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPK-GSIEMGYRIEEAKDEIYF 468

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG   + SK  
Sbjct: 469 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGVESKEG 524

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P +  + 
Sbjct: 525 EGSRFWFRIPRSEKIE 540


>gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli
           STEC_7v]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|294506751|ref|YP_003570809.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294343079|emb|CBH23857.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 768

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 3/251 (1%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +      ++ AEE +  KS  LA+ SHE RTPL +I+GF+E I   TM   ++     +
Sbjct: 505 QEEALRTAKQEAEEASQMKSALLANTSHEFRTPLTSIIGFAEEIA--TMAEDDDAPIGRF 562

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
              I  SG+ LL  ++ IL+LSR++ G          +  +  E        A E +I +
Sbjct: 563 ADHIENSGRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIAL 622

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             + + +     AD +G+R  + NL+SNAVK+T  GG V + V  T      + ++D G 
Sbjct: 623 RTEANGTPVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRV-RTGDEAAVLEVEDTGV 681

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+   +  T+   F Q S  +    +G GLGL + +  +   GG   + ++   G     
Sbjct: 682 GMDPAQTETLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTV 741

Query: 471 ILPNTRVLNFI 481
            LP       +
Sbjct: 742 RLPEAEAPEKV 752


>gi|325681395|ref|ZP_08160921.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
 gi|324106885|gb|EGC01175.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
          Length = 508

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 150/320 (46%), Gaps = 22/320 (6%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
            + +L + +  ++   +    +   +  +  V  +   A+     A+ + +K +  ++  
Sbjct: 173 QIGMLIVVITAIVTGIILLMFFTGMYFIRQIVIPIRGIADITHKYAKGDFSKRIEKKSED 232

Query: 241 R-----------AEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       AEE +     K+ F++S+SHELRTPL AI G++E +        + ET
Sbjct: 233 ELGELCDSINNMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYG---DVET 289

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           +K+ +  I+   + L  ++ E+LD SRI+  R  L    I ++  + E +++ Q RA+  
Sbjct: 290 FKKGMRVINSETERLSQMVEELLDFSRIQDNRLLLQMDTIDILAELGETVLIYQERARVL 349

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +       L  V+ D+  +RQV +N++ NA+K++  G  V V   +       IS+ 
Sbjct: 350 GITLNYFEPDMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEA-YEEEGDICISVS 408

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ ++P +   F + +   +    G G+GL +A  I+A HGG   I S+   G 
Sbjct: 409 DTGIGISKEDLPRIKQKFFKANHTRR----GSGIGLAVADEIIARHGGTLTIDSEQGVGT 464

Query: 467 EVIAILPNTRVLNFIPEDNH 486
            V+  LP     +   E + 
Sbjct: 465 TVMITLPFIEQEHKSEESDT 484


>gi|262051886|ref|ZP_06024101.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
 gi|259160213|gb|EEW45242.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
          Length = 608

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ IM  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIMEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 443

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 130/318 (40%), Gaps = 10/318 (3%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             +   +  S   + +  +   ++    +   L+      L         L K    I +
Sbjct: 136 AKVRKGITSSVATLSLLSAAALVLISLFVAHWLSKRFTAPLELLLPAIDRLGKGEFGIQA 195

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               KD+     +    +S    K+ ++    + R +A ++HELRTPL  + G  +  + 
Sbjct: 196 PVITKDEYGKVAQTFNEMS----KQLQQAEEVRRRLMADVAHELRTPLTILRGKLDWFQQ 251

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           +           E +  +      L  L+ ++  LS  EAG+  L      +  ++++ I
Sbjct: 252 QRRPIEP-----EKLLPLQDELIRLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLI 306

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             +   A+EKNI I      + +++  D   + QV LNLL NA+++T  GG V+V +   
Sbjct: 307 ERVAPSAEEKNIRIHLTCSTNYTTISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEE 366

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I++ D G GIA   +P +   F +   A      G GLGL IA   ++ HGG  
Sbjct: 367 PS-MLQIAVTDTGIGIAPEHLPFLFHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTI 425

Query: 457 LIRSKLREGVEVIAILPN 474
            + S   +G   +  LP 
Sbjct: 426 DVHSTPGQGTTFLVKLPR 443


>gi|296134172|ref|YP_003641419.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032750|gb|ADG83518.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 488

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 22/325 (6%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           ++ L   +L   +    F V V   T   M   + ++       +A            + 
Sbjct: 186 VTILLACILASFMLAILFTVTVGSKTLRRMLRPIDNMINTARSISA------------QD 233

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
               L+     D+L    E    + D    R +     ++RF++  SHELRTP++ I G+
Sbjct: 234 LDTRLNVVNSHDELKELAETFNEMLD----RIQASYEQQNRFVSDASHELRTPISVIQGY 289

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++     G  +    +E I  I     ++ +L+ ++L L+R +     +++++  L +
Sbjct: 290 ANLLNR--WGKDDKAVLEESISAIKNEADNMKDLVEKLLFLARADKNTQNVAKTSFFLNE 347

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +V E +   +L   E  I         + +V AD   ++Q +   L N++KFT   G + 
Sbjct: 348 LVEEVLKETRLIDTEHTITCATN---EVVNVIADRGLIKQALRIFLDNSLKFTPPDGTIS 404

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V   +   +   + I+DNG GI + ++P +   F +   +      G GLGL IA+ I+ 
Sbjct: 405 VN-SYLKDKRVKLVIEDNGIGIPKEDLPYIFDRFYKCDKSRTRESGGAGLGLSIAKWIIE 463

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
            H G   + S + +G +VI  +P  
Sbjct: 464 KHNGTIDVESAVGKGTKVIITMPLQ 488


>gi|47569986|ref|ZP_00240649.1| sensor histidine kinase [Bacillus cereus G9241]
 gi|47553334|gb|EAL11722.1| sensor histidine kinase [Bacillus cereus G9241]
          Length = 356

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 154/358 (43%), Gaps = 20/358 (5%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G    L + +         +  Y S++++ AL I   S      +  + F  +V+   
Sbjct: 9   VTGAIIALFSFLTIIWS----IAFYVSSSVINALEIQVSSFVTFLISDMVGFVFIVLIWV 64

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
              ++     +  +  ++                 +VKI + +    ++   ++    ++
Sbjct: 65  LIGVLMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMT 118

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           DE           +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I 
Sbjct: 119 DELN----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIE 171

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                L  L   +L L+ +E+  Y   +    L   +++ ++  +    EK IE+   ++
Sbjct: 172 TETTRLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLE 231

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                + AD++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E 
Sbjct: 232 K--VHITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYE-TLVEVRIRDSGIGISEE 288

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 289 QKQHIFERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346


>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1407

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                 +  L   +    +   + R++AE  + AKS FLA+MSHE+RTP+NAI+G + ++ 
Sbjct: 751  ELDRHRHHLEDLVTQRTAELAQARQQAEAASQAKSAFLANMSHEIRTPMNAIIGLTHLLR 810

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             + + P  +      +  I  SG+HLL LIN+ILDLS+IEAG+ +L+     L  ++   
Sbjct: 811  KDGVTPQQDGR----LEQIEASGRHLLGLINDILDLSKIEAGKLDLALEDFHLSAVLDHV 866

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              +++  AQ K + I    D   + +  D   +RQ + NL  NAVKFT   G + +    
Sbjct: 867  ASLIRPSAQSKGLHIELDGDAVPTWLRGDPMRLRQCLFNLAGNAVKFTER-GSIVLRAKL 925

Query: 396  TSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                         ++D G G+   +   +   F Q  +       G GLGL + +++   
Sbjct: 926  LKDGAEGLQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGLALTRNLAQM 985

Query: 452  HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             GG+  + S   EG      +   R    +P        
Sbjct: 986  MGGEAGMDSIPGEGSTFWFTVLLQRGHGIMPAPTARRAD 1024


>gi|90023024|ref|YP_528851.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952624|gb|ABD82639.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 761

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 11/291 (3%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
             +        + F   I + LF     IL        +  E+ V     +E  + A++ 
Sbjct: 472 HQTSTVWFVLIIGFIVVIVFGLF-----ILQILNSHSLIKHEVRVKTLALEEALQVAKDA 526

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  K+ FLA MSHELRTPLN+I+GFS V  L+ + P +++     I  I R+GQHLL LI
Sbjct: 527 NSVKTNFLACMSHELRTPLNSIIGFS-VRCLKILSPSHDQKLITAITVIERNGQHLLGLI 585

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N++LDL+++EAG+  ++++ I +   + E +  LQ    +K IEI  K  P L+++ AD+
Sbjct: 586 NDVLDLAKVEAGKMTITKAPIDIAATMDEVVTTLQPLVDDKPIEIKVKTPP-LNTILADQ 644

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLT 422
           +  +Q+ +NL +NA+ FT   GRV +          +   I+++D G GIA+  +  V  
Sbjct: 645 QRFKQIFINLGANAINFTRE-GRVQIDYALETTKGKQALRINVRDTGIGIAKEHVAKVFQ 703

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F Q     +    G GLGL +    +  HGG+  + S++  G      LP
Sbjct: 704 RFEQVGEQFQPGSLGSGLGLALVHEFVTLHGGRIKVTSEVGRGSVFSVWLP 754


>gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
 gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
          Length = 487

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 147/308 (47%), Gaps = 11/308 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            ++VA+S   ++ + V        +   +   +     + + ++ +   +  KD+L    
Sbjct: 170 LLLVAVSLIVLLFVLVSGGFFVNSIVRPVREMSIAVRKIAEGDMSVRIRRQSKDELGQLC 229

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E    ++DE           K+ F++S+SHELRTPL AI G+SE I    MG  + ET K
Sbjct: 230 ESINYMADEISN----SEKLKNEFISSVSHELRTPLTAIQGWSETIMS--MGVGDLETTK 283

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  I      L +++ E+LD SRI+ GR++L++  + ++  + E +++    A  +  
Sbjct: 284 KGMRVISNETGRLSDMVEELLDFSRIQDGRFKLNKDRMDILAELEEAVLIYTEHAHREGK 343

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +        L  ++ D   +RQV +N++ NA+K++  G  V V           I++ D 
Sbjct: 344 QFIYHDIEMLPFIFGDRNRIRQVFINIIDNALKYSDAGDTVTVKAEADDAN-IIITVSDT 402

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GIAE ++P V   F + +   +    G G+GL +A  I++ H G   I S+   G  V
Sbjct: 403 GCGIAEKDLPLVKEKFYKANNTRR----GSGIGLAVAVEIVSMHDGALEIDSEEGVGTTV 458

Query: 469 IAILPNTR 476
              LP  +
Sbjct: 459 TITLPIDK 466


>gi|302749930|gb|ADL64107.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 608

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++  ++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSTKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 848

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 130/268 (48%), Gaps = 18/268 (6%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L       +    E  K+ E+ N AK  FL +++HELRTPLN I+G+ + +  +   
Sbjct: 354 AQALKNSFATLEKKVKERTKQLEKANQAKREFLGNINHELRTPLNLIIGYIDRLYQDGY- 412

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
              N   K+ +  I R+ QHLL+LIN+ILD+S+IE+G   L E++ +L  ++     +  
Sbjct: 413 --LNNEQKKQLDIIDRNSQHLLSLINQILDISKIESGHITLQENSFNLSQLLTNLQEVFN 470

Query: 341 LRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           L    K + +  +   +  L+ ++AD+  ++Q+++NLL NAVKFT   G + ++   ++ 
Sbjct: 471 LSCYSKGLNLILENKIEDKLNYIYADKNKLKQILINLLHNAVKFTDK-GMIKISAEVSNH 529

Query: 399 R-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           R              I +KD G GIA  EI  +  +F Q         QG GLGL I+  
Sbjct: 530 RSLHYSKNQPNYTLRIQVKDTGKGIAREEISQLFKAFEQTQTGRNLN-QGTGLGLYISHQ 588

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   GG   + S    G      +P  
Sbjct: 589 FIKLMGGNITVESSPHSGTTFTLEIPVK 616


>gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
 gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
          Length = 678

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 148/376 (39%), Gaps = 9/376 (2%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
             I+        G  W  L    P     E   + +      +++     +  L  +  +
Sbjct: 303 AAIFTTPISDHDGTTW-RLAASWPEDALDESKVVLQPPVSRESIAKGLWLSGRLLESADV 361

Query: 166 S---FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT---YHLFKSNVKILSCQA 219
           +        +  S    + +  L  +  G+    +     I              L    
Sbjct: 362 ANDELRHQPLIRSLADQLPIGALLGTPFGVGDGVIGAMMLIAPEPRTWTTHERTALQQVT 421

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                    E  ++   E   R E  +  K  F+ ++SHELRTPL +I G+ E++    +
Sbjct: 422 AHTARAFLAEERQAQQVEHVARLEALDRQKDEFVGTVSHELRTPLTSIAGYLEMLADGDL 481

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G L+    K  +  I R+   L  LI ++L L+RIE    + S   + L  +VR+ +  L
Sbjct: 482 GELSPAQLK-AMAVIERNTFRLRGLIEDVLVLNRIETRGLDPSFVPVDLAQLVRDVVQDL 540

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           Q +A++  + +     P    V  D   + + + N++ NAVKF+  GG + V        
Sbjct: 541 QPQARDNEVTLDVSDLPQTCVVEGDALQLGRALTNVVGNAVKFSKSGG-LVVVSVVVELD 599

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I  +D+G GI   ++  + + F + S A   A  G GLGL I ++I+  H G+  + 
Sbjct: 600 AVRIRCRDSGIGIPAADMEQMFSRFFRASNATSGAIPGTGLGLAIVKAIIEAHHGELELH 659

Query: 460 SKLREGVEVIAILPNT 475
           S   EG  V   LP +
Sbjct: 660 SVEGEGTTVSLTLPLS 675


>gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica]
          Length = 943

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A + + KSL +     +E+ + +KS FLA++SHELRTPL  I+G  E+++  ++   
Sbjct: 446 DISARVRMEKSLQEMA-LASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAHSLPAE 504

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +       +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   I      
Sbjct: 505 SA----RLLSTMNNSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLPL 560

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K++ ++  I+P +   +  D   ++QVI NLL+NA+KFT   G V + V        
Sbjct: 561 VVKKSLSLYCYIEPDVPNYIRNDPVRLQQVISNLLNNAIKFTDT-GCVAIHV-VVDKDYL 618

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y+ ++D G GI++ E+  +   F Q     +S+ QG GLGL I + ++    G   + S+
Sbjct: 619 YVRVRDTGVGISDKELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQ 678

Query: 462 LREGVEVIAILPN 474
            + G      LP 
Sbjct: 679 PQIGSMFSIRLPL 691


>gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
          Length = 904

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 137/303 (45%), Gaps = 6/303 (1%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + +  +           + A     +  I       + +++  +    D I E +  +  
Sbjct: 602 ALRDALQEGKPSDLEVRVAAGDEVRWARIRGEPQWEDGEVVRVRGTIQD-ITERKQRERA 660

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV--IELETMGPLNNETYKEYIG 292
             E ++ AEE +  KS  LA+MSHE+RTPL +I+GF+E    E + +   ++     Y  
Sbjct: 661 LREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPNYAE 720

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I +SG+ LL  +  +L+LS++EAG  EL    + L++        L+ RA+EK + +  
Sbjct: 721 LIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVLLQL 780

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           + + + +   AD+ G++ +  NLLSNAVK+T  GGRV +             ++D G G+
Sbjct: 781 ETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYR-EEGAVAFEVEDTGIGM 837

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                  +   F Q S       QG G+GL + +       G   + ++  EG  +   L
Sbjct: 838 DPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWL 897

Query: 473 PNT 475
           P  
Sbjct: 898 PKA 900


>gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei
           Ss046]
 gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 EDL933]
 gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK966]
 gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. TW14359]
 gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1044]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1080

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/273 (31%), Positives = 139/273 (50%), Gaps = 6/273 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+    A+ E         R+ AE  N  K  FLA +SHELRTPLN ILG++++++   
Sbjct: 685 TEQKQAEAQREQLLRQEQAAREAAERANRMKDEFLAVLSHELRTPLNPILGWAKLLQSPL 744

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           +   +++  ++ +  I R+ +  + L+ ++LD+SRI  G+  LS  AI L + +   +  
Sbjct: 745 V---SSDKLQQGLSAIERNAKQQVQLVEDLLDISRIIRGKLTLSFGAIDLSEPIAAALET 801

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++L A+ K I++   +DPS+  V  D   ++QV+ NLLSNA+KF + GG V V +     
Sbjct: 802 VRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLLSNAIKFNSTGGWVTVQLTSV-D 860

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           R   I + D G GI    +P V   F Q   +   +  G+GLGL IA+ ++  HGG    
Sbjct: 861 RHAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFGGLGLGLAIARQVVEAHGGTITA 920

Query: 459 RSK-LREGVEVIAILPNTRVLNF-IPEDNHEST 489
            S     G      LP   V +   P+  +  T
Sbjct: 921 VSAGEGLGATFTVQLPLMPVPSPDAPDYLNNQT 953


>gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
 gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
          Length = 1277

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             RKR E     K+ F++++SHELRTPL AI G   +I    +G +  +T ++ +   H +
Sbjct: 1042 ERKRIE---QMKNEFVSTVSHELRTPLTAIAGSLGLINGGALGEV-PQTMRQMLAIAHSN 1097

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
               L  LIN++LD+ ++ AG+ +    A  +  ++ + ++  Q  A++  +E+  +++  
Sbjct: 1098 SLRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDD 1157

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             + V  D + + QV+ NLLSNA KF+  GG V V    T G    +S+ DNGPGI E   
Sbjct: 1158 -ALVNVDTQRLAQVMANLLSNAAKFSPPGGNVVV-CLQTLGEALRVSVSDNGPGIPEAFK 1215

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            P + + F Q        + G GLGL I + I+   GGQ    S   +G      LP
Sbjct: 1216 PRIFSKFSQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFELP 1271


>gi|313625271|gb|EFR95100.1| sensor protein kinase WalK [Listeria innocua FSL J1-023]
          Length = 274

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 38  EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 95

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 96  RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPKEPVIIE 154

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 155 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 213

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 214 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 269

Query: 483 EDNHE 487
           ED+ E
Sbjct: 270 EDDWE 274


>gi|221141404|ref|ZP_03565897.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257424215|ref|ZP_05600644.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426892|ref|ZP_05603294.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429528|ref|ZP_05605915.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432175|ref|ZP_05608538.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435136|ref|ZP_05611187.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|282912933|ref|ZP_06320725.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922561|ref|ZP_06330251.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|293497986|ref|ZP_06665840.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511576|ref|ZP_06670270.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550185|ref|ZP_06672857.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273233|gb|EEV05335.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276523|gb|EEV07974.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257280009|gb|EEV10596.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283054|gb|EEV13186.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285732|gb|EEV15848.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|269939545|emb|CBI47903.1| transcriptional regulatory protein WalK [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314782|gb|EFB45168.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|282323033|gb|EFB53352.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919232|gb|EFD96308.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096917|gb|EFE27175.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465534|gb|EFF08066.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|329312743|gb|AEB87156.1| Sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 608

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++  ++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSTKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|91070383|gb|ABE11297.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HF10-88H9]
          Length = 688

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L++E   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSDEEQIEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    I +   + + +   +L A EKN+ +  +I+ ++  +  
Sbjct: 469 LVNDVLDLSRLESGKI-VQLDQIDIKPAIEQTLRNYRLNATEKNVSLAHEIEETIPPILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPNIKNDAAPQCELVSPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEIADTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces
            venezuelae ATCC 10712]
          Length = 1337

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/411 (24%), Positives = 164/411 (39%), Gaps = 27/411 (6%)

Query: 91   KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
             +    +  +G+    R  +    +          L      +   L +     +L  + 
Sbjct: 606  DRFRLGESLVGQAARSRRTIAAENVPADYVTISSGLGSTSRGSLVVLPVVVEDQVLGVIE 665

Query: 151  ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYIT 204
            + + + F   +  FL      V ++   I++    D  L      AG L +         
Sbjct: 666  LMSFTPFTSVHRDFLEQLMETVGVNLSTIVANARTDELLDESQRLAGELRSRTEELQVRQ 725

Query: 205  YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257
              L +SN ++    A       ++E      ++ R+  E+        +  KS FLA+MS
Sbjct: 726  EELQRSNAELEEKAALLATQNRDIEAKNLQIEQARQELEDRAQQLALASTYKSEFLANMS 785

Query: 258  HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
            HELRTPLN++L  ++++       L      EY G IH +G  LL LIN+ILDLS++EAG
Sbjct: 786  HELRTPLNSLLILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEAG 844

Query: 318  RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
            + + +   + L  ++       +    +K++         +   +  D+  +RQV+ NLL
Sbjct: 845  KMDFNPERVPLRRLLDYVEATFRPLTTQKSLAFSVTTAAGVPVDLVTDDSRLRQVLRNLL 904

Query: 377  SNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFG 425
            SNAVKFT   G V + +   S                  + D G GIA   +  +  +F 
Sbjct: 905  SNAVKFT-EHGSVELRIEPASDAELPVPVHRGGPVVAFRVTDTGIGIAPENLEAIFGAFQ 963

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q          G GLGL I++ I    GG   + S   EG      LP TR
Sbjct: 964  QADGTTNRKYGGTGLGLSISREIAFLLGGALTVTSVAGEGSTFTLYLPVTR 1014


>gi|258543393|ref|YP_003188826.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634471|dbj|BAI00447.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637529|dbj|BAI03498.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640581|dbj|BAI06543.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643638|dbj|BAI09593.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646693|dbj|BAI12641.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649746|dbj|BAI15687.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652734|dbj|BAI18668.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655790|dbj|BAI21717.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1105

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 9/314 (2%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
             V L    + V        ++ +    L   LA  +  +  +     +      +    
Sbjct: 569 RFVCLLICIISVLGLLAHKTNLPLDGTLLFVFLACVIGAWLLVMAQEGRKTATRETLHQT 628

Query: 221 KDDL--IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +  +  I             R++AE  +LAK+R+++ +SHE+R+PLNAI+G+ ++++ +T
Sbjct: 629 RLLMNEIRARRRMDQALQSAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQHDT 688

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             P      ++ +  +  SG H+ ++++ +LD+SRIEAGR EL    I L+  +     M
Sbjct: 689 RMPT---ERQQTLSIMRESGDHITSILSGLLDISRIEAGRIELHSDTIPLVTFLESVAQM 745

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++ +AQ K ++ + K     S V  DE  +RQV+LNLLSNA+K+T   G V  +  W + 
Sbjct: 746 MRPQAQAKGLKFYWKPQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQ-GSVTFSARWHA- 803

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           +    +++D GPGI+  +   +   F +   A  +   G GLGL I + +    GG+   
Sbjct: 804 QIAEFTVEDTGPGISIEDQERIFDPFERA--AATANIPGTGLGLTITKLLTEVMGGELTF 861

Query: 459 RSKLREGVEVIAIL 472
            S + +G      L
Sbjct: 862 TSTMGKGSCFKLRL 875


>gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
 gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
          Length = 566

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R RAEE   A   F+A ++HELRTPLN +LG +E++    +    N+     + ++ 
Sbjct: 192 QKARARAEESEKATKEFVAMINHELRTPLNGLLGSAELLAETQL----NDEQSTLLNNLV 247

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KI 354
            SG  L  +IN+ILD S+I AG  EL  S      + +    + Q +A EK ++    + 
Sbjct: 248 YSGDLLRLIINDILDFSKISAGMMELIPSRFEWASVKQMLNGIFQSKAVEKGVDFRIKES 307

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            P    +  D + + QV++NL+ NAVKFT   G V VT  W   +   I+++D G GI +
Sbjct: 308 TPIPPILIGDFERICQVMVNLVGNAVKFTRQ-GSVSVTTQWKHDQ-LTITVEDTGIGIEQ 365

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++ T+   F Q         +G GLGL I ++++    G   + S    G      +P 
Sbjct: 366 EDLSTLFDPFVQVDRTATRHFEGTGLGLAICKNLVELMRGHIHVHSVKGSGSTFTVTIPL 425


>gi|4768855|gb|AAD29649.1|AF124757_9 phosphate regulon sensor protein PhoR [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 421

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 169/439 (38%), Gaps = 29/439 (6%)

Query: 39  TLHVESLFRVSPILPLFVLLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
               +S  R   ++    + ++ +          + +   W +++L +         K +
Sbjct: 1   MTFPQSRLRKDCVIKFIPVYLSGLSILALFIIAVSHVSVGWPILSLMLIVILWGWWFKNI 60

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +                      G   T            + +       LL+      +
Sbjct: 61  SEASTPFPESK-----------SGNSLTDPAYPFSQATAADIIIAMDEPALLVNQGQVEV 109

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +N      + +      + ++ +   ++ +L   L  M    L+    +          +
Sbjct: 110 ANRAAENLLGMHIEGGDIRMAIRHPAAIRLLTEPLDNMTPVLLAGLGGVNRRWELYAYPL 169

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                E+  LI   + + +   E           +  F+A+ SHELRTPL  + GF E +
Sbjct: 170 ----NEEQRLILLRDQSTAHLTE---------QVRIDFVANTSHELRTPLATLSGFIETL 216

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E + +     +T   ++  + R  + + NL+++++ LSRIEAG++ L    + +  +V E
Sbjct: 217 EDDDVIKE-RDTRHHFLSIMAREAKRMQNLVDDLMSLSRIEAGKFSLPHDIVHMSPVVEE 275

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  +Q   Q K  +I  +   S  S+  D   + Q++ N++ NA+K+    G + V + 
Sbjct: 276 VVSNIQASGQAKATQITLENHLSSDSLQGDRAELTQLLYNIIGNALKYGRKDGIIKVALD 335

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T      ++I D G GI    IP +   F +   +   A  G GLGL I + I+ +H G
Sbjct: 336 NTDDHRIKLAIADEGDGIPYHHIPRLTERFYRVDNSRSRALGGTGLGLAIVKQIVEHHRG 395

Query: 455 QFLIRSKLREGVEVIAILP 473
           + LI S   +G  V   LP
Sbjct: 396 ELLIDSLPGKGTTVTVFLP 414


>gi|15600175|ref|NP_253669.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9951266|gb|AAG08367.1|AE004911_2 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 998

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 159/386 (41%), Gaps = 15/386 (3%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +V    +        R  L   +    +   L  +            ++  + L      
Sbjct: 355 RVERFPLSYQPPGGERRQLGELE----IAIDLAAVYRRLVSGGLASLLWMGSFLCGLAVA 410

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +     L              ++   +     LD           +    +        
Sbjct: 411 LSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKVDRERDEI-DAVAAALEDMRQALR 469

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                  A++D+L  ++E   +     + +AE  + AKSRFLA+MSHE+RTPLN ILG +
Sbjct: 470 TDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMA 529

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++   ++G  +    ++ +  +  +G+ LL ++NE+L  +R+E           SL  +
Sbjct: 530 ELLREASLGERD----RQRLRALATAGEGLLAILNEVLHFARLEEAPDVPEAVDFSLRSL 585

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + + + +L+ RA+E    +   +DP +       E+ +RQV+ NLL NAVKFT   G V 
Sbjct: 586 LEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEA-GEVR 644

Query: 391 VTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           V V   +         +S+ D+G GI E     +   F QG  A+     G GLGL I++
Sbjct: 645 VRVERLARSAGSERLRLSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGLAISK 704

Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472
            ++   GG+  + S++ +G      +
Sbjct: 705 RLVEALGGRIGVESRVGQGSTFWFEI 730


>gi|294507245|ref|YP_003571303.1| protein containing histidine kinase domain [Salinibacter ruber M8]
 gi|294343573|emb|CBH24351.1| protein containing histidine kinase domain [Salinibacter ruber M8]
          Length = 746

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 8/260 (3%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           ++      L  AK  ++  R RA E + AKS FLA+MSHE+RTPL +I+GF++ I  E  
Sbjct: 471 DRLQQEQVLRSAKEQAERARARAVEASKAKSAFLANMSHEIRTPLTSIIGFADAIGEEIQ 530

Query: 280 GPLNNE------TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
              +            +   + + G+ LL+ ++ +L+LS++E+G+ EL+E A+ L++  R
Sbjct: 531 SLKDCPDEANLVQLDRFSELVGQGGKRLLDTLDAVLNLSKLESGQIELAEEAVDLVEKTR 590

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L+  AQEK++ +  ++        ADE G++ V+ NLLSN +K+T  GG V V V
Sbjct: 591 QVAEELRPSAQEKDLRLDLQMGADEILARADEGGVQIVLQNLLSNGIKYTEEGG-VQVRV 649

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T+     + ++D+G G+       +   F Q S  +    +G G+GL + +  +    
Sbjct: 650 HRTAED-AVLEVEDSGIGMEPERAEALFEPFRQASEGLSRKFEGSGVGLAVTKKAVEQMD 708

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G+  + ++  +G   +  LP
Sbjct: 709 GRVDVETEKGKGSRFVVRLP 728


>gi|257468274|ref|ZP_05632370.1| sensor protein barA [Fusobacterium ulcerans ATCC 49185]
 gi|317062552|ref|ZP_07927037.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC
           49185]
 gi|313688228|gb|EFS25063.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC
           49185]
          Length = 633

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I     K+       +    +L + +         +++ AE  N AK+ FLA +SHE+RT
Sbjct: 119 IKREKEKAEALSEELRLLNKNLESIVATRTKELIISKEIAESANRAKNEFLAKISHEMRT 178

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  I+G+S ++  E      +   K+ +  IH SG  LLN  NE+LD S+IEAG+ +L+
Sbjct: 179 PLTPIIGYSRLLLKE----FPDSPLKDKLDIIHTSGVKLLNFTNELLDFSKIEAGKVDLN 234

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
             + ++ ++ ++        A  KNI+   +   +   +++D+  + ++  NL+ NA+K+
Sbjct: 235 YESFNIKELFQDIYHEHSTLASSKNIKFKIEFSANEVIIYSDKMKIYEIAKNLIHNAIKY 294

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V   V          ++ D+G GI++  I  +  SFGQ    I     G GLGL
Sbjct: 295 TEK-GFVLCEVDI-KDSYLSFNVYDSGIGISKTNINYIFESFGQ----INKQSSGAGLGL 348

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + ++    G   + SK+  G      +P  
Sbjct: 349 SITKKLVEILNGTIEVESKVLIGTTFKVKIPIE 381


>gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 594

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 6/231 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHE RTPL  I G  E +    +     E  + Y   I    + L 
Sbjct: 367 ERLEQLRKDFIANVSHEFRTPLTVIKGSIEALNDGAIEK--KEDIERYYSRILSETKILQ 424

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L+LSR+++G+  ++E  + +  ++ +    +Q  A +K I I      ++  V 
Sbjct: 425 RLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIEAVPPVL 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   +RQ+    + NA+K++    ++ + +         I I D G GI+E E+P V  
Sbjct: 485 GDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAV--KGTLEIKIADKGYGISEEELPYVWE 542

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   + +S   G GLGL IA+ ++  HGG   ++S L EG  V   LP
Sbjct: 543 RFYKTDKSRESN--GTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLP 591


>gi|222100696|ref|YP_002535264.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
 gi|221573086|gb|ACM23898.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
          Length = 473

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 5/245 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
              + +  +R +  +  K+ F+A++SHELRTPL AI  ++E +    +  L+ +T KE++
Sbjct: 222 NITASKELERLKRIDRMKTEFVANISHELRTPLTAIKAYTETMYNS-LEELDTDTLKEFL 280

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +     HL NL+NE+LD SR+E    ++ +   ++ +++   +  ++  A  + +++F
Sbjct: 281 EVVLDQSNHLENLLNELLDFSRLERKALQIKKEKTNICELLESAVGAIKEFAASQGVKVF 340

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDN 408
            +          D   M+QV+LNLLSN VK++        V V +         I ++DN
Sbjct: 341 LEKKVPCFEAEVDPTRMKQVLLNLLSNGVKYSKKDEPEKYVKVVLDKDENG-ILIVVEDN 399

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E     +   F +   ++     G GLGL I + I+  HGG+  + S+  +G   
Sbjct: 400 GIGIPEHAREKIFEQFYRVDSSLTYEVSGTGLGLAITKEIVELHGGRIWVESEEGKGSRF 459

Query: 469 IAILP 473
              +P
Sbjct: 460 FVWIP 464


>gi|218264345|ref|ZP_03478202.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222076|gb|EEC94726.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
          Length = 654

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 14/243 (5%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +     +++AEE +  KS FLA+M+HE+RTPLNAI+GFS+VI  E+    + ET +E+  
Sbjct: 425 ARLKIAKEKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIAEES----DIETRREFAK 480

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  + + L  LI ++LD+S+IE+       +   L  ++++   ++ LR  E N+E+  
Sbjct: 481 IIQNNNELLQRLIEDVLDISKIESNTLTFVLTDQDLQALMKDLYSIMSLRISE-NVELQL 539

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPG 411
              P   ++  D   + QV+ NLL+NA+K T  G   ++  G+  +       + D G G
Sbjct: 540 DDCPRF-TLRTDRNRLTQVLANLLTNAIKHTHEG---YIRFGYKVAAGEICFYVADTGEG 595

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E ++  V   F + +        GVGLGL I+++++A  GG+  + SK  EG     I
Sbjct: 596 IPEDQLEHVFDRFVKLTEWTT----GVGLGLAISKALVAKLGGRMEVCSKQGEGSTFSVI 651

Query: 472 LPN 474
            P 
Sbjct: 652 FPV 654


>gi|265765063|ref|ZP_06093338.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254447|gb|EEZ25881.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301161449|emb|CBW20989.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 549

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 4/239 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++  EE N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I + 
Sbjct: 9   EKEHIEEMNQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKH 65

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q +  LI+E+LD  + +    +L  S  SL   + E  +     A +K+I    K+   
Sbjct: 66  AQQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQ 125

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+W D+  MR+V+ NLLSNA K     G + +    T  +   I++KD+G GI++ E 
Sbjct: 126 DISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQ-VVIAVKDSGNGISKEEQ 184

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F Q     K+   G G+GL + +SI+  H G   + S+  EG   I  LP TR
Sbjct: 185 ERIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPKTR 243


>gi|77747905|ref|NP_638195.2| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|77761144|ref|YP_242350.2| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
          Length = 1182

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 25/310 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + L  Q    M      +A  +   L       +       +      ++  L  
Sbjct: 745  VAAPALTLQVQPPWWMSPAAQMVAVAVCLLLFGLGVWAWRRRVRRQQEWVLARQRQQL-- 802

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                           AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 803  ---------------AEQASIAKSNFLATLGHEVRTPMTGVLGMSELLLATPL----DAK 843

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + ++  I ++G HLL L+N+ LDL+RIEAG+ EL +       + +E    +    + +
Sbjct: 844  QRGHVDAIRKAGAHLLRLVNDALDLARIEAGKLELVQQPFEPSQLTQELADFMHPIVEAR 903

Query: 347  NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +    +   P+   V  D   +RQ+++NLL NA+KF    G V +TV    G      +
Sbjct: 904  GLRFHYRNQLPAALVVVGDATRVRQILINLLGNAIKFAER-GEVGLTVSQ-HGDCLRFKV 961

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +D+GPGI   +   +   F QG  A  +    G GLGL I+Q +     G+  +RS+L  
Sbjct: 962  RDSGPGIGPEQQKRLFQRFEQGEGARTNARYGGSGLGLAISQELTVAMKGKIRVRSRLGV 1021

Query: 465  GVEVIAILPN 474
            G +    LP 
Sbjct: 1022 GTQFTVDLPL 1031


>gi|330719616|gb|EGG98187.1| PAS/PAC sensor hybrid histidine kinase [gamma proteobacterium
           IMCC2047]
          Length = 309

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 158/309 (51%), Gaps = 6/309 (1%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           +    ++  L   A+  + V  +       +++     +     +    +     E  D 
Sbjct: 1   MLIIVILAGLLIAAVYWLVVRHVLSISRKVSSIGSDDRLNVSACREITALAESVNELADE 60

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A  E  +      R+ AE+ +LAKS FL+SMSHELRTP+NA+LGF++++ +E +     
Sbjct: 61  YALRERREEELQIARQHAEDASLAKSHFLSSMSHELRTPMNAVLGFAQLLVVEDLTT--- 117

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ + +I  +G+H+++LI+++LDLSRIE+ +  ++   +++  ++ + + ++   A+
Sbjct: 118 -EQQDSVNEILVAGEHMVSLIDDVLDLSRIESDQLIVNPEVVAIGALIADSLKLVNHFAR 176

Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK I I   +       V AD+  ++QV++NLL+NA+K+    G V V    T      +
Sbjct: 177 EKGISINFDMRGNDEVHVLADKTRLKQVLINLLTNAIKYNCEHGSVEVLTKVTGSNRIRV 236

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G G+ + ++  + TSF +   A++    G+G+GL I + ++    G+    S++ 
Sbjct: 237 DISDTGDGLDKNQLENLFTSFNRFD-AMEKGIDGLGIGLVICKHLIEAMSGRIGASSRVG 295

Query: 464 EGVEVIAIL 472
           EG      L
Sbjct: 296 EGSTFWVEL 304


>gi|239993130|ref|ZP_04713654.1| PAS sensor signal transduction histidine kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 943

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                +E +  K  FLA+++HELR PL  I    E+++ +           E  G + R 
Sbjct: 562 AIDALQEADRRKDEFLATLAHELRNPLAPIRNALEILQSDDYSQN---QKSEAFGRVERQ 618

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              ++ L+++++D+SRI  G+  +    ++L +I+   I  +Q    EK   +  +    
Sbjct: 619 VTQMIRLVDDLMDVSRITRGKIRIHRKPVNLCEILDTAIETIQPLIDEKQHTLLVEKVAE 678

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   + Q+  N+++NA K+T  GG + V +  T      I++KDNG GI  G++
Sbjct: 679 PVWVNGDLIRLSQIFSNIINNAAKYTPPGGNIEVCIS-TCDGKVTIAVKDNGEGIPAGKL 737

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP-NT 475
            +V   F Q   A++ ++ G+G+GL + + +   H G   ++S  + +G   I  LP  +
Sbjct: 738 KSVFDMFTQVDGALERSQGGLGIGLTLVKKLTELHDGTVNVQSDGVDKGTTFIVTLPVLS 797

Query: 476 RV--LNFIPEDNHESTQ 490
           +V  L   PE  H+   
Sbjct: 798 KVPKLASKPEKAHDVVD 814


>gi|99081695|ref|YP_613849.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037975|gb|ABF64587.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 579

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           G    AL     +       N+K L   A   D +  L+ A+ L+ E  + A+ E  A+ 
Sbjct: 128 GTPIGALCVIDRVPRQWSSDNLKTLQHLAVAVDNVIALKHARELAAEAERTAKREAEARK 187

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMG-PLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            +LA MSHE+RTPLN I+G  +++  E     L+     + +  I+RS ++L +L+N+ L
Sbjct: 188 TYLAHMSHEIRTPLNGIIGSVDLLLREASRVNLDPREQNDLLRTINRSARNLQHLLNDAL 247

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI--FQKIDPSLSSVWADEKG 367
           D+++I+AG+ EL+ +A  L + V + + +   +A EK +E+    +   +    + D   
Sbjct: 248 DIAKIDAGKLELAPAAFDLHETVDDVMKLFSAQACEKGVELNHSFRGIEAQEQRYGDRFR 307

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + Q++ NLLSNA+KFT   G V + +  T     +++++D+G GIA   +  +   + Q 
Sbjct: 308 LAQILGNLLSNAIKFT-DDGSVSLQINGTPD-ALHLTLRDSGCGIAPDRLDKLFLPYTQA 365

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           S  +   + G GLGL I   ++    G+    S    G      LP   +    PE  
Sbjct: 366 SADVAQTKGGTGLGLTIVHQMVELMQGRIRAESVPGRGTVFHLYLPL-PLTTSAPEAE 422


>gi|188990704|ref|YP_001902714.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|21114042|gb|AAM42119.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572920|gb|AAY48330.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|167732464|emb|CAP50658.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1180

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 25/310 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                 + L  Q    M      +A  +   L       +       +      ++  L  
Sbjct: 743  VAAPALTLQVQPPWWMSPAAQMVAVAVCLLLFGLGVWAWRRRVRRQQEWVLARQRQQL-- 800

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                           AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    +  
Sbjct: 801  ---------------AEQASIAKSNFLATLGHEVRTPMTGVLGMSELLLATPL----DAK 841

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + ++  I ++G HLL L+N+ LDL+RIEAG+ EL +       + +E    +    + +
Sbjct: 842  QRGHVDAIRKAGAHLLRLVNDALDLARIEAGKLELVQQPFEPSQLTQELADFMHPIVEAR 901

Query: 347  NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +    +   P+   V  D   +RQ+++NLL NA+KF    G V +TV    G      +
Sbjct: 902  GLRFHYRNQLPAALVVVGDATRVRQILINLLGNAIKFAER-GEVGLTVSQ-HGDCLRFKV 959

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +D+GPGI   +   +   F QG  A  +    G GLGL I+Q +     G+  +RS+L  
Sbjct: 960  RDSGPGIGPEQQKRLFQRFEQGEGARTNARYGGSGLGLAISQELTVAMKGKIRVRSRLGV 1019

Query: 465  GVEVIAILPN 474
            G +    LP 
Sbjct: 1020 GTQFTVDLPL 1029


>gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 144/277 (51%), Gaps = 12/277 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L + + ++   Q    +++ +L       +    + +E +  KS F+ASMSHELRTPLN+
Sbjct: 558 LNRRSTELSESQQALMNIVEDLNEKTDELEGANTKLKEFDRLKSMFIASMSHELRTPLNS 617

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+GFS VI  E +GP+ N   KE +  I R G+HLLNLIN+++D+S+IEAG+ E      
Sbjct: 618 IIGFSSVILNEWIGPV-NAEQKENLAIILRCGKHLLNLINDVIDVSKIEAGKIESVAEEF 676

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
              D++ E + +++   +EK +++      +   +  D + + Q +LNLLSNA+KFT  G
Sbjct: 677 DFYDLISEAVGLVRKDMEEKGLDLQV--AATHQQMHMDRRRLLQCVLNLLSNALKFTEHG 734

Query: 387 GRVHVTVGWT-------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           G + V                  IS+ D G GI E ++P +   F + +  +++   G G
Sbjct: 735 G-LTVETRIMPCPGEAPEAGVAEISVTDTGIGIREEDLPKMFQPFVRLASPLQATVPGTG 793

Query: 440 LGLPIAQSI-MANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL + + +      G  L+ S+  +G      +P  
Sbjct: 794 LGLYLTRKLAAEVLKGDILLTSEYGKGSRFTLRIPVR 830


>gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 871

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 14/304 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA----KSLSDETRKRAEEEN 246
                 +           +          ++D LI+  +             R RA + +
Sbjct: 445 AAPVGTVQLAVLAATGEQRRVQWTCQAFFDEDGLISHFQAVGIDITEQVAAERARA-QAD 503

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  FLA++SH+LRTPLNAI GF+++++   + P      +EY+G    + + LL LI+
Sbjct: 504 RDRRTFLAAVSHDLRTPLNAIYGFTDLLQATELTP----QQREYLGLCRSASEKLLALID 559

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
            +LDLSR+E+GR  L +    L ++V   + +L+  A+E  + +  +  P     V  D 
Sbjct: 560 TLLDLSRMESGRLTLHDEPFELAEVVERQVAVLRAVAEEAGLRLTVREAPGTPQWVRGDA 619

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
               QV+ NL+SNA++FT   G V + V        Y+++ D G GIA  +   +  +F 
Sbjct: 620 TRFGQVVHNLISNAIQFT-EHGEVVLEVAPEGSGWLYVAVHDTGVGIAPEDREHIFKAFA 678

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPE 483
           QG+ +    + G GLGL I Q ++   GG+  + S+L +G        LP         E
Sbjct: 679 QGNPSF-RRQPGNGLGLRICQELVRLMGGRLEMTSELGKGSTFYFTARLPRVEPPQAAFE 737

Query: 484 DNHE 487
              E
Sbjct: 738 ATPE 741


>gi|313148589|ref|ZP_07810782.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137356|gb|EFR54716.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 768

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL   +    + ++ AE   L K  FLA+MSHE+RTPLNAI+GF+ ++  ET G L+ 
Sbjct: 518 VQELVRREDELIKAKEIAENAEL-KQSFLANMSHEIRTPLNAIVGFTNILVDETAGELDE 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+ IG ++ + + LL LI+++LD+SR+++   E       L  IV E     Q+   
Sbjct: 577 EEKKDMIGIVNHNSELLLKLISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVIIH 636

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
              +E   K+D S    V  D+  + QVI N LSNA KFTA  G + +      GR +  
Sbjct: 637 PP-VEFRLKMDDSWTVYVAVDKLRLIQVISNFLSNANKFTAE-GSITLGCEVDPGRAEVG 694

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI  G +  +   F +         QG GLGL I + I     G+  ++S++
Sbjct: 695 IYVEDTGKGIDTGHLNAIFDRFYKADE----FAQGTGLGLSICKVIATRLSGRVEVQSQV 750

Query: 463 REGVEVIAILPNTR 476
            +G     +LP  R
Sbjct: 751 GKGSRFTLVLPLMR 764


>gi|55823081|ref|YP_141522.1| sensor histidine kinase [Streptococcus thermophilus CNRZ1066]
 gi|13324643|gb|AAK18825.1|AF327739_2 Hpk2 [Streptococcus thermophilus]
 gi|55739066|gb|AAV62707.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDD---GALNEEIAPNFIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L+    +    +   +        Q     K+ EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAIKYSPDGGKITVSMKTTDTQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
 gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
          Length = 1176

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 10/254 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              ++E    ++   + +++AE  + AKSRFLA+MSHE+R+PLNA+LG  E++    +  
Sbjct: 481 LHDVSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL-- 538

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  + Y      +G  LL+ IN+ILD S+IEAG+  L   + S   +V + + +L  
Sbjct: 539 --NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKNMSFSPAKMVAQVMQILAP 596

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EK + +   I+ ++ + V  D + +RQV+ NL+ NA+KF+  GG + V +    G  
Sbjct: 597 KANEKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKFS-SGGCISVEMWIPDGHH 655

Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           Q +     + D G GI+      +   F Q      +   G GLGL I   ++   GG+ 
Sbjct: 656 QEVQLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTGLGLAICSELITMMGGEI 715

Query: 457 LIRSKLREGVEVIA 470
            + S+L  G     
Sbjct: 716 ELSSRLGHGSCFRF 729


>gi|260770406|ref|ZP_05879339.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
 gi|260615744|gb|EEX40930.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
          Length = 1203

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+  +  +    + +  A++  L++ RFLASMSHELRTP+  ++G  E++++       N
Sbjct: 614 ISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIR----ETN 669

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +  + ++  S  HL  L+N+ILD S++EA + EL      L+  + E + +    A+
Sbjct: 670 EDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHCTAAR 729

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK+++      P  + +V  D   +RQ+I NLLSNA+KFT   G V V +  T       
Sbjct: 730 EKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFT-QSGFVSVDIDVTERDMVM- 787

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D+G G++   + TV   F Q    I     G GLGL I   ++    G   I S+  
Sbjct: 788 NISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITIDSEQG 847

Query: 464 EGVEVIAILP 473
           +G  +   +P
Sbjct: 848 KGTSIQVTIP 857


>gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           4_1_40B]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|242372584|ref|ZP_04818158.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349801|gb|EES41402.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
          Length = 610

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       +      ++       + ++
Sbjct: 372 QQVERERREFVANVSHELRTPLTSMNSYIEALEGGAWQDESLAPQ--FLSVTREETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      ++I        
Sbjct: 430 RLVNDLLQLSKMDNESDQITKEIIDFNMFINKIINRHEMAAKDT--TFVREIPQQTIFAE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 488 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 548 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 605


>gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1632

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 8/222 (3%)

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +MSHE+RTP+NA+LG  ++I+   M    +    +Y+     + + LL L+N+ILD S+I
Sbjct: 909  NMSHEIRTPMNAVLGMLQLIQHSDM----SRQQADYVTKAENAAKSLLGLLNDILDFSKI 964

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
            +AG+ EL      L  ++RE  +ML      +++E+   +DP++   +  DE  +RQV+L
Sbjct: 965  DAGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDELRLRQVLL 1024

Query: 374  NLLSNAVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            NL  NA+KFT+ G  +  V     +       ISI D+G GI+  +   +   F Q   +
Sbjct: 1025 NLAGNAIKFTSEGHVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIFQGFVQAESS 1084

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                  G GLGL I +S++   GG+  + S + EG      L
Sbjct: 1085 TSRRFGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFEL 1126


>gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 301]
 gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 2457T]
 gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           Sb227]
 gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. W3110]
 gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           5 str. 8401]
 gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ATCC 8739]
 gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SE11]
 gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI1]
 gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           55989]
 gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI39]
 gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMN026]
 gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9]
 gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|40951|emb|CAA37397.1| arcB [Escherichia coli]
 gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 2457T]
 gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227]
 gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K12 substr. W3110]
 gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5
           str. 8401]
 gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11]
 gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli 55989]
 gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI1]
 gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI39]
 gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli UMN026]
 gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LF82]
 gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BL21(DE3)]
 gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           2002017]
 gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli ETEC
           H10407]
 gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2a str. 2457T]
 gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli W]
 gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli
           DH1]
 gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1]
 gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli
           3431]
 gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           CDC 796-83]
 gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           EC4100B]
 gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli
           EPECa14]
 gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli
           E128010]
 gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LT-68]
 gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1180]
 gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1357]
 gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
 gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482]
 gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120]
 gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489]
 gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863]
 gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007]
 gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167]
 gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii
           3594-74]
 gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMNK88]
 gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-671]
 gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2930-71]
 gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-272]
 gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-304]
 gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-227]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|329735733|gb|EGG72014.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU028]
          Length = 610

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E    ++       + ++
Sbjct: 372 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--QDKELAPSFLSVTREETERMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      ++I        
Sbjct: 430 RLVNDLLQLSKMDNESDQITKEIIDFNMFINKIINRHEMAAKDT--TFVREIPQQTIFAE 487

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++     V   V   +      I IKDNG GI   ++  + 
Sbjct: 488 IDPDKMTQVFDNVITNAMKYSRGEKCVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 547

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 548 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIED 605


>gi|322434681|ref|YP_004216893.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162408|gb|ADW68113.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 577

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 12/298 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +  +   G + + +    ++   L ++  +I   ++E  +   +     SL  +     
Sbjct: 2   SLATLYTLGSIGSCVLICVFLGVTLLRAKREINRLRSELQEASEQQRSKDSLLTQRS--- 58

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E +  K  F++++SHELRTPL +I G   ++    MG ++    +  +     +   L+
Sbjct: 59  -ELDTIKDEFISTVSHELRTPLTSIRGALGLLSAGMMGEVD-AKAQNLLRIAVTNTDRLI 116

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360
            LIN+ILDL R+E+GR  L     SL D+V++ +  +   AQ  +  + +     P    
Sbjct: 117 RLINDILDLERMESGRAPLHVRRCSLRDLVQQSVETMTPMAQTAQVELTLALLSPPEGMY 176

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   + Q++ NLLSNA+KF+     V + V         + + D G GI   ++ T+
Sbjct: 177 FDGDPDRILQILTNLLSNAIKFSPAQSIVTIQVEADLD-SVLVRVADQGRGIPLEKLDTI 235

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL----REGVEVIAILPN 474
              F Q   +    + G GLGL I ++I+  H G     S        G  ++  LP 
Sbjct: 236 FDRFQQVEASDARQKGGTGLGLAICRTIVLQHNGSIWAESNESHQRGPGATLLVSLPR 293


>gi|167644818|ref|YP_001682481.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347248|gb|ABZ69983.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 859

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L   +     + +      + +             L  A     + R RAE  N AKS F
Sbjct: 410 LTAEVELNRRLAHASIVIAMLLGVLVLGGVGWGFYLRKASVRLKDARGRAEAANEAKSAF 469

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA MSHELRTPLN +LG ++ +  E +    +   +E +  +  SG  LL L+N+ILDLS
Sbjct: 470 LAVMSHELRTPLNGMLGMAQALRTEDL----DARQREQVELMIDSGDTLLVLLNDILDLS 525

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371
           +IEAG+ E++ +A  L+ +    +   Q  A+EK + +   +D     +   D   +RQ 
Sbjct: 526 KIEAGKLEIAPTAGDLVGVCVRLVGGYQPTAREKGVALNFTMDGEPPPLLQFDGVRVRQC 585

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           + NLLSNA+KFT + GRV V +  +   G       +++ D G G+++  +  +  +F Q
Sbjct: 586 LANLLSNALKFTVV-GRVDVNLACSPDPGSGRLRVRLTVTDTGIGMSQATVSKLFGAFTQ 644

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +      G GLGL I + +     G  L+ S++ EG       
Sbjct: 645 ADASTTRTFGGTGLGLNITRRLAQLMHGDILVESRVGEGSTFTLSF 690


>gi|317474610|ref|ZP_07933884.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909291|gb|EFV30971.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1356

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 17/299 (5%)

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             + I+ +              L   T + ++L ++    +  Q        + E      
Sbjct: 762  ARLIIHILPPYYRTTFAYFIYLILTTAVLWYLIRTYKSRIKLQESL-----KYEQKHIQD 816

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             E        N +K RF  ++SHE RTPL  I+G  E +    +       Y + +G I+
Sbjct: 817  VEA------LNQSKLRFFTNISHEFRTPLTLIVGQVETLLQ--LQNFTPAIYNKILG-IY 867

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            ++   L  LI E+LD  + E G  ++  S  ++++ + E  ++    A  K I    + +
Sbjct: 868  KNSIQLRELITELLDFRKQEQGHMKIKVSPHNIVNFLYENYLLFLEYASAKRINFNFEKE 927

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                 VW D+K M++VI NLLSNA+K T     + ++V         I +KD G GI   
Sbjct: 928  TDELEVWYDQKQMQKVINNLLSNAIKHTEEEDTITLSVKKEEDN-VVIRVKDTGSGIDAK 986

Query: 416  EIPTVLTSFGQGS--IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            EI  +   F Q     +  + + G G+GL + + I+  H G   + S+L +G   I  L
Sbjct: 987  EIDKIFDRFYQIDPINSTDAGKSGTGIGLALTKGIIELHHGTIRVESELGKGTSFIVTL 1045


>gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine
           bacterium HP15]
          Length = 783

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              L +    +   + +  +    L      S   R  A   N AK++FLA++SHELR P
Sbjct: 212 PDELSELEQALNKMRLQILEDTRSLRQTTIQSQGERDEAVRANHAKNQFLANVSHELRIP 271

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L ++LG++ ++    +    ++  +EY+  +  + + L  +IN++LD+S +EAG+  L +
Sbjct: 272 LQSVLGYANLLTDTPL----DQEQREYVLTLLSASESLSAIINDLLDISSMEAGKLVLED 327

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
               L + + + + ML  RA+EK + +  +ID +L   +  D   +RQ++LNL SNA+KF
Sbjct: 328 IPFDLRETLNDLVHMLGSRAREKGLALELRIDENLPWALKGDPVRIRQILLNLTSNAIKF 387

Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  G     + V           I+++D G GI   ++P V   + Q     +    G G
Sbjct: 388 TDSGHVLISIEVLGRRDDKARLRIAVEDTGVGINPEDVPLVYEPYVQLGQQFQRQLPGAG 447

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTR 476
           LGL I + ++    G   + S+  EG        LP   
Sbjct: 448 LGLTICRQLVGLMDGSMDLESRPGEGSTFWMELTLPVAP 486


>gi|218131775|ref|ZP_03460579.1| hypothetical protein BACEGG_03396 [Bacteroides eggerthii DSM 20697]
 gi|217986078|gb|EEC52417.1| hypothetical protein BACEGG_03396 [Bacteroides eggerthii DSM 20697]
          Length = 1356

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 17/299 (5%)

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
             + I+ +              L   T + ++L ++    +  Q        + E      
Sbjct: 762  ARLIIHILPPYYRTTFAYFIYLILTTAVLWYLIRTYKSRIKLQESL-----KYEQKHIQD 816

Query: 236  DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
             E        N +K RF  ++SHE RTPL  I+G  E +    +       Y + +G I+
Sbjct: 817  VEA------LNQSKLRFFTNISHEFRTPLTLIVGQVETLLQ--LQNFTPAIYNKILG-IY 867

Query: 296  RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            ++   L  LI E+LD  + E G  ++  S  ++++ + E  ++    A  K I    + +
Sbjct: 868  KNSIQLRELITELLDFRKQEQGHMKIKVSPHNIVNFLYENYLLFLEYASAKRINFNFEKE 927

Query: 356  PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                 VW D+K M++VI NLLSNA+K T     + ++V         I +KD G GI   
Sbjct: 928  TDELEVWYDQKQMQKVINNLLSNAIKHTEEEDTITLSVKKEEDN-VVIRVKDTGSGIDAK 986

Query: 416  EIPTVLTSFGQGS--IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            EI  +   F Q     +  + + G G+GL + + I+  H G   + S+L +G   I  L
Sbjct: 987  EIDKIFDRFYQIDPVNSTDAGKSGTGIGLALTKGIIELHHGTIRVESELGKGTSFIVTL 1045


>gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae Sd197]
 gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
 gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae
           Sd197]
 gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
          Length = 778

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|314935218|ref|ZP_07842571.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656553|gb|EFS20292.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
          Length = 608

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 5/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       N      ++       + ++
Sbjct: 369 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDENLAP--SFLSVTREETERMI 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 427 RLVNDLLQLSKMDNETEQITKEIVDFNMFINKIINRHEMAAKDT--TFVREIPNETIFTE 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 485 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 544

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  
Sbjct: 545 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 598


>gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 622

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 14/256 (5%)

Query: 224 LIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +I + E  +   D    +++AEE ++ KS FLA+M+HE+RTPLNAI+GFS+++       
Sbjct: 372 MIDDQERLEFEEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLL----GVE 427

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++E  + YI  I  +   LL+++N++LD+SRIE+     +   + L   +++    +QL
Sbjct: 428 EDSELRQNYISLIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQL 487

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRG 400
           R + + +E+     P +     D   + Q+ +NLL+NAVK T   GR+          + 
Sbjct: 488 R-RPEGVEMTLDACPDII-FNIDRNRLWQICMNLLTNAVKHTKK-GRIWFGYTLEAEEKM 544

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + E+  +   F Q        EQGVGL L I + ++   GG   + S
Sbjct: 545 IKFYVSDTGCGIPKDELDNIFARFVQL----SDFEQGVGLELAICKGLVLKMGGNISVIS 600

Query: 461 KLREGVEVIAILPNTR 476
           +   G   I  LP  R
Sbjct: 601 EEGFGSTFIFTLPMKR 616


>gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii
           ATCC 9905]
 gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii
           5216-82]
 gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 155-74]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|77460200|ref|YP_349707.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77384203|gb|ABA75716.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 126/273 (46%), Gaps = 6/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +  AE   + A L  +    +  R  A +   A+S FLA+MSHE+R
Sbjct: 250 RLTDYLAQLEDIVSARTAELKAINARLSQSNQELEVARSTALDMAEARSAFLANMSHEIR 309

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    N   ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 310 TPLNGLLGMIALSLDGPL----NAEQQQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 365

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 366 EHIPFDLGSLIEDTANLLSQNAAPSVELTCLIDPHFPALVLGDPTRVRQIVSNLLSNALK 425

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +         I + D G GIA+     +   F Q    I     G GLG
Sbjct: 426 FT-RFGRVDVRLSTWKDG-VRIEVCDTGIGIAQEAQVKIFQPFTQAGAGITRQYGGTGLG 483

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L +  ++     G+  I S++  G +  A LP 
Sbjct: 484 LALTYNLCEAMQGRLTISSEVGFGSQFCAELPL 516


>gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|228952361|ref|ZP_04114449.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229043750|ref|ZP_04191452.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|229109449|ref|ZP_04239043.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228674016|gb|EEL29266.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228725603|gb|EEL76858.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|228807357|gb|EEM53888.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 351

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 155/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 297 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1236

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 126/277 (45%), Gaps = 10/277 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   +   +    + +     L  ++        +  + A + +  KS F++++SHE
Sbjct: 464 VAVVIRDVTDEHKAKDAIERVNFKLEEKVVSRTKELMKATEEARKASSVKSSFISNISHE 523

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPLN ++G   +++ + +    N+  ++ +  +  S  +L  LIN++LDLS+IEAG+ 
Sbjct: 524 MRTPLNGVVGSLSLLKRQPL----NDKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKL 579

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSN 378
           +++      + ++     +  ++A  K +E+           + +D   + QV+ NLL+N
Sbjct: 580 DINHQLFEPLTLIESLAKVFAVKAATKGLELIVDTTGLPRVEINSDRHRLNQVLSNLLNN 639

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A+KFT   G + +              + S+ D G GIA    P + T+F Q   ++ + 
Sbjct: 640 AIKFTEK-GHIQLNAALYENDAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADASVATQ 698

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             G GLGL I + +    GG    +S +  G      
Sbjct: 699 YGGTGLGLSICKQLTQLLGGDITFKSVVDVGSTFSFY 735


>gi|56418865|ref|YP_146183.1| hypothetical protein GK0330 [Geobacillus kaustophilus HTA426]
 gi|56378707|dbj|BAD74615.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 420

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 133/329 (40%), Gaps = 29/329 (8%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           A +       +    +    F  ++ +         V    L  ++  A+ F        
Sbjct: 119 AAARDWRVLAVAYPLIIHGDFAGMLYIGMDVTSFFGVFHWLLVVLIGLAVLFLAVGV--- 175

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                  LS    K  LI                 EE    + +F+A  SHELRTPL+ +
Sbjct: 176 ------ALSYFMSKRALIPI---------------EEAYERQRQFVADASHELRTPLSVV 214

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR--YELSESA 325
               E + LE    + N+  +  +  +    + +  L+N++L L+R +A     ELS+  
Sbjct: 215 FSSVEALALEE-DVMKNDFARRLLDRLREELKRITKLMNDLLTLARADAKNAALELSKQT 273

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
                       ++   A +K I +     P  + V AD   + Q++  LL NA+K+T  
Sbjct: 274 FDFRPHAERTFQLVSELAAKKQITMHFH-APEQALVTADPDKLTQLLYILLDNAIKYTPE 332

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V +++     +   +S+KD G GI   +I  +   F +        + G GLGL IA
Sbjct: 333 GGEVTLSIRTEPKQFI-LSVKDTGIGIPPEDIGRIFDRFYRVDKTRSRQQGGHGLGLSIA 391

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + I+  HGG   ++S+L +G E +  LP 
Sbjct: 392 KWIVEAHGGTIHVQSQLGQGSEFLVRLPA 420


>gi|167749697|ref|ZP_02421824.1| hypothetical protein EUBSIR_00655 [Eubacterium siraeum DSM 15702]
 gi|167657320|gb|EDS01450.1| hypothetical protein EUBSIR_00655 [Eubacterium siraeum DSM 15702]
          Length = 639

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FL ++SH++RTP+NAI G+ E+ +     P   +    Y+ +I   GQ LL+L
Sbjct: 258 ANRAKSTFLFNISHDIRTPMNAITGYVELAKHHLNEP---DKLSGYMDNISNCGQKLLSL 314

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +N +LDL+RIE  +  +  +   + D+   CI M +  A++K + I  + +     ++ D
Sbjct: 315 LNNVLDLARIENNKTVIENTINDIDDLFTSCITMFENSAEKKKLTISMRKNIKYRYIYID 374

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPT 419
           E    ++++N++SNA+K+T   G +   +    G  +       SI D G G++E  I  
Sbjct: 375 ETHFSEIVMNIMSNAIKYTGADGEITCAIRQEDGDNEQMCNTVFSITDTGIGMSEEYISH 434

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +  +F +   +  S  +G GLG+ I + ++   GG+  + S + EG      LP      
Sbjct: 435 IFEAFSRERTSTVSGVEGAGLGMGIVKKLVDLMGGEITVSSAIGEGSAFTVSLPCRISSE 494

Query: 480 FIPEDNHESTQY 491
              +     T  
Sbjct: 495 EEAKAKRADTDI 506


>gi|89896384|ref|YP_519871.1| hypothetical protein DSY3638 [Desulfitobacterium hafniense Y51]
 gi|89335832|dbj|BAE85427.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 305

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 129/301 (42%), Gaps = 7/301 (2%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           AL+  A++        +        +    +T  L +          +        ++A+
Sbjct: 7   ALALIAVVMGLTASWRMRRGQRPHENIHDILTDALAQIARGNFDVFLDAKATDMHHDLAE 66

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +++D  R         +  F++++SHE+++PL +I GF+ +++ E +     E  + Y  
Sbjct: 67  AINDMARG-LGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDL---PTEQRRRYAE 122

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I    + L +L   +L L+ ++  +  L+     L   +    ++L+ +   KN+ +  
Sbjct: 123 IIEGESKRLSSLSENLLKLTTLDNSKLSLNRQDFRLDKQLEHVALLLEPQWSAKNLTLEA 182

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
            +   L  +  DE  + QV  NLL NA+KFT  GG++ + +    G    ++I D G GI
Sbjct: 183 DLP--LCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIELKR-EGNTAQVTIGDTGIGI 239

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   +   F +   A   +  G GLGL + + I+  H G   + S + +G      L
Sbjct: 240 GPEDRIHIFERFYKADKARARSAGGNGLGLSLVKKIVDLHEGSIGVESTIGKGTTFEIFL 299

Query: 473 P 473
           P
Sbjct: 300 P 300


>gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           4343-70]
 gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-218]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|315650247|ref|ZP_07903320.1| phosphate regulon sensor histidine kinase protein PhoR [Eubacterium
           saburreum DSM 3986]
 gi|315487492|gb|EFU77801.1| phosphate regulon sensor histidine kinase protein PhoR [Eubacterium
           saburreum DSM 3986]
          Length = 486

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 14/323 (4%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA----- 219
           L F      L   A    +        + A  +     I   L +  +K+    A     
Sbjct: 162 LLFIASTDNLVAVAEGVGNTERFLYITLTAIVVVLSVVIANRLLRPLIKLRDDIASIGYG 221

Query: 220 EKDDLIAELE--VAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + D  +   E  + KS+S+  +    + +  + ++  F+A++SHEL+TP+ +I   ++ +
Sbjct: 222 KIDQKLEHNEYKLTKSISENIKTTLAKLQAIDKSRDEFVANVSHELKTPITSIRVLADSL 281

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               M  + N  Y E++ DI         +I+++L L +++     L    + +  ++++
Sbjct: 282 M--GMENVPNGMYAEFMHDISDEIDREAKIIDDLLSLVKLDKAANTLVTEQVDINQLIKQ 339

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  L+  A +++IE+  +    +S+   DE  +   + NL+ NAVK+   GG V V++ 
Sbjct: 340 ILKRLRPIADKRDIELTFETVREVSA-DVDETKLSLAVNNLIENAVKYNKDGGFVKVSID 398

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               +  YI +KD+G GIA      +   F +   A      G GLGL I ++++  H G
Sbjct: 399 -EDHKFFYIQVKDSGDGIAPEYQDLIFERFYRIDKARSRQTGGTGLGLAITRNVVHLHDG 457

Query: 455 QFLIRSKLREGVEVIAILPNTRV 477
              + SK  EG      +P   V
Sbjct: 458 IIKVSSKEGEGTTFTVRIPLNHV 480


>gi|307244128|ref|ZP_07526246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492499|gb|EFM64534.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 426

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 134/273 (49%), Gaps = 9/273 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  +FK  +  +    EKD +I+ +   + +S+  R R E        F A++SHEL+TP
Sbjct: 163 SGRIFKVKIDPVKMHLEKDLVISSVINIEDISE--RIRLENIRR---DFAANVSHELKTP 217

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L +I GF E +++     + + T K ++  I      L  LIN+IL LS IE G   LS 
Sbjct: 218 LTSIQGFIETLKVND-DNIESATRKRFLDIIDNESSRLRILINDILMLSSIE-GDIVLSL 275

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L    ++ + + + +  +K + I+ + +  L ++    +  +++++NL+SNA+K+ 
Sbjct: 276 EKVDLKKENKKILDLFEDKMVKKQVNIYFEYN-GLETIQTHREYYKELMINLISNAIKYN 334

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V+          I I+DNG GI   E   +   F + + +      G GLGL 
Sbjct: 335 RPGGYVKVSFFEDEDDY-RICIEDNGIGIGVEEQERIFERFYRVTKSRNKEIDGTGLGLA 393

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           I + I+ + GG   + S L +G +    LP  +
Sbjct: 394 IVKHIILSLGGDIGLESVLGQGSKFKISLPKNQ 426


>gi|209550641|ref|YP_002282558.1| integral membrane sensor hybrid histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536397|gb|ACI56332.1| integral membrane sensor hybrid histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 1128

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 172/368 (46%), Gaps = 10/368 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAIMSMH 183
           +            + K  T L    I+ +       A+       V A S  T  +++  
Sbjct: 550 VGTVAKALLPETVLGKLTTRLGRYGIAVVLALTAIGAILAMIAHQVAAGSPETAEVVNRT 609

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLSDETRKR 241
           +L +     + + +  + Y+  H  +   +  S +     L  IA  +   +     ++ 
Sbjct: 610 ILIVFFVFSVISGVVCWFYVLAHDSRVVAEEESSRQNTLLLKEIAAHKKTDTALQSAKET 669

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE  N AKSR++  +SHELRTPLNA+LG+++++E +   P      +  I  I RS +HL
Sbjct: 670 AEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAP---RQSSIKVIRRSAEHL 726

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
             LI+ +LD+S+IEAGR ++  + I++ D + + + M + +AQ K +    +  P+L   
Sbjct: 727 SGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVDMFRPQAQAKGLAFIHERAPALPQF 786

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DEK +RQ+++NLLSNA+KFT   G V   V +   +    ++ D G GI E ++  +
Sbjct: 787 VRTDEKRLRQILVNLLSNAIKFTDE-GSVTFDVAYR-SQVATFTVTDTGRGITEKDLTRI 844

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +G         G+GLGL I + +    GG+  + S   EG      L  + V+  
Sbjct: 845 YEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIAVSSVKDEGSTFRVRLMLSAVMRA 904

Query: 481 IPEDNHES 488
           +     E 
Sbjct: 905 VAAAPQEK 912


>gi|55821168|ref|YP_139610.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311]
 gi|55737153|gb|AAV60795.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus LMG 18311]
          Length = 446

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I ++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDD---GALNEEIAPNFIKVSLDETNRMMRMITDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L+    +    +   +        Q     K+ EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAIKYSPDGGKITVSMKTTDTQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
 gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|254975208|ref|ZP_05271680.1| putative two-component histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255092598|ref|ZP_05322076.1| putative two-component histidine kinase [Clostridium difficile CIP
           107932]
 gi|255314335|ref|ZP_05355918.1| putative two-component histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255517014|ref|ZP_05384690.1| putative two-component histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255650116|ref|ZP_05397018.1| putative two-component histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260683243|ref|YP_003214528.1| putative two-component histidine kinase [Clostridium difficile
           CD196]
 gi|260686839|ref|YP_003217972.1| putative two-component histidine kinase [Clostridium difficile
           R20291]
 gi|260209406|emb|CBA62877.1| putative two-component histidine kinase [Clostridium difficile
           CD196]
 gi|260212855|emb|CBE04062.1| putative two-component histidine kinase [Clostridium difficile
           R20291]
          Length = 618

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 2/238 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHRS 297
           ++  EE +  +  F A++SHELRTP+N I    +VIE +      +N+T K  +G I ++
Sbjct: 353 KRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQN 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  +L L+N ++D +++++G  +       +I  + E  + +   A + NI++    +  
Sbjct: 413 GNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIE 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+  D + + ++ILNLLSN +K+    G++++ + +       + I D+G GI + +I
Sbjct: 473 EFSMLFDSEKLERIILNLLSNGIKYNKKDGKINIFL-YVKDNVFNMKISDSGIGIPKEKI 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F Q    +    +G G+GL + +S++  H G   ++S+L  G E I  LP  
Sbjct: 532 DKIFNRFEQIDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGIGSEFIVSLPVR 589


>gi|126699182|ref|YP_001088079.1| putative two-component histidine kinase [Clostridium difficile 630]
 gi|255100704|ref|ZP_05329681.1| putative two-component histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|115250619|emb|CAJ68443.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 618

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 2/238 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHRS 297
           ++  EE +  +  F A++SHELRTP+N I    +VIE +      +N+T K  +G I ++
Sbjct: 353 KRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQN 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  +L L+N ++D +++++G  +       +I  + E  + +   A + NI++    +  
Sbjct: 413 GNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIE 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+  D + + ++ILNLLSN +K+    G++++ + +       + I D+G GI + +I
Sbjct: 473 EFSMLFDSEKLERIILNLLSNGIKYNKKDGKINIFL-YVKDNVFNMKISDSGIGIPKEKI 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F Q    +    +G G+GL + +S++  H G   ++S+L  G E I  LP  
Sbjct: 532 DKIFNRFEQIDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGIGSEFIVSLPVR 589


>gi|317475919|ref|ZP_07935174.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907851|gb|EFV29550.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1365

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 129/277 (46%), Gaps = 17/277 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +       + + +     AE+ N AK +F  ++SHE+RTP++ I+   + +        
Sbjct: 806  QIRQRYRARQEMLEH--IHAEQLNEAKLQFFINISHEIRTPMSLIISPLQKLMATD---S 860

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            + E  + Y   I+R+ + LL L+N+++D+ +I+ G+ +L      ++  +++       +
Sbjct: 861  DTERQQSY-NIIYRNAERLLRLVNQLMDIRKIDKGQMQLKFQETDIVSFIQDLHYTFAYQ 919

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            A  K+I++    +      W D K   +VILNLLSNA KFT   G + + +   +     
Sbjct: 920  ANTKHIKLAFHSEVKELKAWIDPKNFDKVILNLLSNAFKFTPENGNIQIRLRTGNDPDAA 979

Query: 399  -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ISI+D+G GI E E+  +   F Q   +  ++  G G+GL + +S++  H 
Sbjct: 980  EKALSHYFEISIEDDGIGINETELERIFDRFYQIRNSQNNSNIGTGIGLHLTRSLVELHH 1039

Query: 454  GQFLIRSKLR-EGVEVIAILPNTRVLNFIPEDNHEST 489
            G   + +     G   I  LP  +  +  PE+   S 
Sbjct: 1040 GSITVENNQGTSGCRFIVRLPLGK-EHLKPEEIDNSA 1075


>gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
 gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTT----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|170748504|ref|YP_001754764.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655026|gb|ACB24081.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 909

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 8/340 (2%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           I    +  L  +V      +   +    +        +  G      +        L   
Sbjct: 177 IGVGVSLYLQRSVTRPLAALARTMEAARL-RHDYAQRAPVGGDDEVGALARTFNDLLSAV 235

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           N +     A    L AE+    +   E ++ A+  N AKS FLA+MSHE+RTP+N +L  
Sbjct: 236 NERDHRLAAHSAHLEAEVSARTADLSEAKQVADAANAAKSAFLATMSHEIRTPMNGVLVM 295

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E++     G       + Y   I RSG+ LL +IN+ILD +++EAG+ EL    +S  +
Sbjct: 296 AELLA----GSDLPARQRRYAEVIARSGRSLLAIINDILDFAKVEAGKLELERVPVSPAE 351

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +    + +   RA+   +++  ++ P +   +  D   + QV+ N +SNA+KFT   G V
Sbjct: 352 LADTAVTLFAERARTAGLDLAAEVAPEVPHAILGDPVRLGQVLSNFVSNALKFTEA-GHV 410

Query: 390 HVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V +   +G G   I++ D G GI + ++ T+ ++F Q   +      G GLGL IAQ I
Sbjct: 411 SVRMAIDAGDGCLVIAVSDTGIGIPQDKLATIFSAFSQADQSTTRRFGGTGLGLSIAQQI 470

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +A  GG   + S++  G    A +P T      P    E+
Sbjct: 471 VAAMGGTVAVTSRVGAGSTFSARIPVTVAEPARPVRRREA 510


>gi|254760065|ref|ZP_05212089.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 453

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 231 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 288

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 289 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 346

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+VH+      G+   I +KD+G GIA+  +P +  
Sbjct: 347 GDRNRLKQIFLNIVQNAIKYSHENGKVHIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 405

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 406 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 453


>gi|228941850|ref|ZP_04104397.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974775|ref|ZP_04135341.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785178|gb|EEM33191.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818062|gb|EEM64140.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 484

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIEVNLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|228981370|ref|ZP_04141670.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
 gi|228778570|gb|EEM26837.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
          Length = 485

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 230 QLNQGFEEMRKKLKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 287

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 288 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMD 347

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 348 LSEEGIEVNLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 406

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 407 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESE 466

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 467 LGKGTSIFFSL 477


>gi|229178390|ref|ZP_04305759.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
 gi|229190088|ref|ZP_04317094.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228593417|gb|EEK51230.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228605120|gb|EEK62572.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
          Length = 351

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 155/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 297 FYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|172057192|ref|YP_001813652.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171989713|gb|ACB60635.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 546

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +L +S F++ +SHELRTPL++I+GF+E++   T+   +    K+Y+  IH     L  
Sbjct: 317 ELDLKQSEFVSIVSHELRTPLSSIMGFTELLMRRTL---DGPRQKKYLETIHSETVRLAE 373

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI++IL++ + E      ++  + L  +V E   M  L + +  I +    +P    + A
Sbjct: 374 LIDDILEIQKGEDLTQGTTKKRMDLKKLVFEMRPMFDLASSKHRIRVAF--EPGRYELTA 431

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            E+ M+Q+  NL+ NA+K++  GG + +  G        ++++D G GI E  +P +   
Sbjct: 432 SEEKMKQLFTNLIMNAIKYSPDGGLIQIK-GVVQDHLIRLTVEDEGIGIPEKSVPFIFDK 490

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F +   +      G GLGL I Q I+ +H G   ++S+   G       P   V  
Sbjct: 491 FYRADNSDTRKIGGTGLGLAICQMIVKDHDGTISVQSEEGIGSTFTVEFPIEMVTE 546


>gi|217965615|ref|YP_002351293.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|217334885|gb|ACK40679.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|307569836|emb|CAR83015.1| sensory box histidine kinase [Listeria monocytogenes L99]
          Length = 610

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|15837931|ref|NP_298619.1| hypothetical protein XF1330 [Xylella fastidiosa 9a5c]
 gi|9106325|gb|AAF84139.1|AE003965_12 hypothetical protein XF_1330 [Xylella fastidiosa 9a5c]
          Length = 1197

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 166/407 (40%), Gaps = 41/407 (10%)

Query: 86   NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
             +  G+++     +  E+      L+VG   +          +P +    Y         
Sbjct: 657  VIRAGRRIDLPVDQPFELLPNDRQLIVGARLLS-------FGDPLSNRYSYWLKGFDTGW 709

Query: 146  LIALSISALSNFMLPYAVFLSFFPVVVALS---------TQAIMSMHVLDISLAGMLATA 196
            +   S        LP A +         +           + +         ++ +  + 
Sbjct: 710  IDQGSSGTREFSSLPPADYTLLIQGTDPMGNLSRIHLVTFRVLPPWWRSAWGMSVLTGSG 769

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L     + ++  +   +    Q E+                 R+ AE  +LAK++FLA++
Sbjct: 770  LLLLWGVAWNYHRRLRRRACLQLEQHQ---------------REVAERASLAKTQFLATL 814

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
             HE+RTP+  +LG SE++    +          Y   I  +G+HLL L+N+ LDL++IEA
Sbjct: 815  GHEVRTPMTGVLGMSELLLETPLDT----RQHGYATSIQAAGKHLLRLVNDALDLAKIEA 870

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+  L         ++ + + M++   + K +    ++DP +   V  D   ++Q++LNL
Sbjct: 871  GKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYRLDPEVPQYVHGDTDRLQQILLNL 930

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSI-AI 431
            L NA KFT   G V + V     +   G  I + D GPG++E +   +   F Q +  + 
Sbjct: 931  LINATKFT-EHGEVVLQVAPGQEQACLGVRIDVADTGPGLSEEQCQRLFRRFEQVNGAST 989

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   G GLGL I + +     G+  + S+L +G     +LP   VL
Sbjct: 990  AARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCFRVLLPLPWVL 1036


>gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1]
 gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1]
          Length = 785

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     + L ++    ++ R RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTNELKASNSSLSLSNQELEQARSRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALALDNPL----PSEQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
              A  +  +V +   +L     +             SSV  D   +RQ++ NLLSNA+K
Sbjct: 375 ERIAFDMGSMVEDTANLLSQNTAQSVELTCLIASDFPSSVLGDPTRVRQIVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    + ++D G GI E     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVRLMAIVGG-VRLEVRDTGIGIPEDAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L + +++     G   IRS+   G    A LP T     IP  
Sbjct: 493 LALTRNLCKAMQGHLHIRSEPGFGSCFTAELPLTVHTEAIPPA 535


>gi|30018834|ref|NP_830465.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229126082|ref|ZP_04255104.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4]
 gi|229143377|ref|ZP_04271808.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24]
 gi|29894376|gb|AAP07666.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228640184|gb|EEK96583.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24]
 gi|228657404|gb|EEL13220.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4]
          Length = 463

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+     +E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKES---TPSEQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +++++     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISIT-EEHKRISITIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   +  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARTRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|304436457|ref|ZP_07396431.1| sensory transduction histidine kinase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370503|gb|EFM24154.1| sensory transduction histidine kinase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 426

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    + +F A  SHELRTPL  +L  ++++  +    + +   K+ I D+    + +  
Sbjct: 189 EAYERQRQFAADASHELRTPLAVVLASADLLHSDP--TITSPFLKQVIEDVRDEVKKMTK 246

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L ++R +    +     + +    R+ + M++  A++K+I I  ++ P  + V+A
Sbjct: 247 LVSDLLTVARTDGRATQFKPVRMDIAAAARQTVRMMRPFAEKKDIAIE-ELLPKRAEVYA 305

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+ +RQ+IL L+ NAVK+T   G + V++         +SI D+G GI +     +   
Sbjct: 306 DEQKIRQLILILVDNAVKYTPEHGHIEVSLSTEERGMVCLSITDSGIGIEKEHQERIFDR 365

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   A      G GLGL IA+ I+  H G   + S+L +G      L
Sbjct: 366 FYRVDKARSRRMGGNGLGLAIAREIVEAHHGSITLNSELGKGTTFHVRL 414


>gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 420

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  + L    ++ +      KS F+A+MSHE+RTPLNAI+GFS ++    +     
Sbjct: 169 VTELKNVQRLLTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLM----VSASGE 224

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y   +  + + LL L+N+I DLS+IE+G  +         D++RE   + + +  
Sbjct: 225 EERKMYADILAENNERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLN 284

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
              +E+  +       ++++ + + QV+ NLL NA+KFTA  G +            Y  
Sbjct: 285 NSPVELICEAHVQPIMMYSERERIIQVLSNLLHNAMKFTAS-GEIRFGCRLEGMEEVYFF 343

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +   + + F +         QG GLGL ++Q+I+ N GG   + SK+  
Sbjct: 344 VSDTGIGIPEEDQKKIFSRFIKLD----REMQGTGLGLTLSQTIIQNLGGNLELDSKVNR 399

Query: 465 GVEVIAILPN 474
           G     +LP 
Sbjct: 400 GSTFSFVLPR 409


>gi|251795760|ref|YP_003010491.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543386|gb|ACT00405.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 137/313 (43%), Gaps = 8/313 (2%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
              F       + +    ++      +  A  L   +   T  T  + +    I      
Sbjct: 154 RVHFDELRMFFLVMFILTVLLSFPYFLLSARYLVQPIIRLTEATKKVAQGQYNIQIPVKR 213

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           KD++       +++S+E     E  + +K  F+A++SHE+++PL +I G+++ +  + + 
Sbjct: 214 KDEIGQLARHFRAMSNE----LERSDRSKKEFVANVSHEIQSPLASIQGYADSLVHQDI- 268

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + E  + Y   I +  +HL  L  ++L LS ++   Y   +    L   +R+ + +L+
Sbjct: 269 -NDAERIRHYASIIGQETRHLAALSRQLLLLSTLDHSGYSPGKQPFLLKPQLRQAVQLLE 327

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
            +  EK I I   +   L  ++ DE  + QV  NLLSNAVK    G  +HV+        
Sbjct: 328 WQLTEKEIAIRVAVPGKL-RIYGDEVLLMQVWTNLLSNAVKHIPGGRSIHVSAEQ-EDGA 385

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             ++++D G GI E ++P +   F +G  A        GLGL I Q I+  HGG     S
Sbjct: 386 CIVTVRDTGDGIPEDQLPYIYDRFYRGDSARDRRSGSTGLGLSIVQRIVQLHGGTIEADS 445

Query: 461 KLREGVEVIAILP 473
           +   G      +P
Sbjct: 446 RFERGTTFRVRIP 458


>gi|153954091|ref|YP_001394856.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219854704|ref|YP_002471826.1| hypothetical protein CKR_1361 [Clostridium kluyveri NBRC 12016]
 gi|146346972|gb|EDK33508.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219568428|dbj|BAH06412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 144/270 (53%), Gaps = 4/270 (1%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  +      ++++ A+ E   +      +  EE   +K  F   M+HE +TP++ I  
Sbjct: 132 SHHDVSELIKNQEEIKAQQEKLLNAEKSRNEILEEAIKSKEEFFYLMTHEFKTPISVINL 191

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             + I          E   +Y+  I ++    L L+N +LD++RI++G  ++++S  S+I
Sbjct: 192 ALQAI-DLMYKKEITEKVNKYLNTIKQNVNRQLRLVNNLLDIARIDSGHLKMNKSCFSII 250

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++   +  +QL A++KN+ +    + S  ++++DE+ + +++LNLLSNA+KFT  G  +
Sbjct: 251 HVIEAIVNSVQLYAKQKNVILKFNTNLSKKNIYSDEEKLERILLNLLSNALKFTPSGKSI 310

Query: 390 HVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            VT+    + +G    IS++D G GI   +  T+   FGQ   ++    +G GLGL + +
Sbjct: 311 IVTLSTKKYKNGEMISISVQDEGMGIPLDKQKTIFERFGQVDSSLSDQAEGTGLGLHLVK 370

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            ++ +  G+ L+ S + EG     +LP+++
Sbjct: 371 LLVNSLDGEILLNSTVGEGSIFTVLLPSSK 400


>gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella
           dysenteriae CDC 74-1112]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           OP50]
          Length = 724

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|186682599|ref|YP_001865795.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465051|gb|ACC80852.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 740

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 18/284 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAK--------------SLSDETRKRAEEENLAKS 250
             + + N ++L   AE      EL                  +  DE     ++ N  K+
Sbjct: 159 EEIQRQNQELLRAMAELRKREEELTQLNRELEDTNRGVVALYAELDEKADSLQKANELKT 218

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RFL++MSHE RTPLN+IL  S ++     G L  E  K+ +  I ++   L  L+N++LD
Sbjct: 219 RFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQ-VTFIQKAASGLSELVNDLLD 277

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMR 369
           L+++EAG+ E+  S+  + D+      ML+    Q  ++ +  +    +  +++DE  + 
Sbjct: 278 LAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEEPEGIGQIYSDEGKVA 337

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ N +SNA+KFT   G V VT     G     S+ D G GIA  +   +   F Q   
Sbjct: 338 QILRNFISNALKFTEQ-GEVRVT-SVQRGHTVIFSVSDTGIGIATADRERIFEDFVQIES 395

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +++   +G GLGLP+++ +    GG   + SKL EG    A +P
Sbjct: 396 SLQKQVKGTGLGLPLSRKLTELLGGSISVTSKLGEGSTFTASIP 439



 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  +   +  +  NA ++   GG V  +V     +   I I+D G GI    +  VL  
Sbjct: 35  DQARLATAVSEIARNAFQYA-RGGTVEFSVAGEP-QEFLIRIQDRGGGIP--HLEDVLAG 90

Query: 424 FGQGSIAIKSAEQGVGLGLPIA--QSIMANHGGQFLIRSKLREGVEVIAI 471
                          G+GL I   Q +M      F I S   +G  V+  
Sbjct: 91  RYASD---------TGMGLGIVGSQKLMDF----FEIESLPGQGTTVVMS 127


>gi|89069260|ref|ZP_01156627.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89045258|gb|EAR51325.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 460

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 160/449 (35%), Gaps = 39/449 (8%)

Query: 57  LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116
           L VA++ ++F       +W    L  +A      +      ++  E  VW     +  +A
Sbjct: 2   LRVASVLSFFAGLVAVTIWIATALVEHAVE----RDASRRSLEWAEFAVW-HVPRIDDLA 56

Query: 117 IGLC-----WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
            GL            +        +        L             L      +   + 
Sbjct: 57  QGLPSDPAELAAFEDLAHFGGVFRFKIFSPDGVLRFVSDDPGSVGSSLGTHNEHAVAVLT 116

Query: 172 VALSTQAIMSMH-----VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD---- 222
              +   +             S   +          I         K+ + + E      
Sbjct: 117 SGEAMTFVKDGREKPDRPDLYSETYLPVYDGDRLVAIAETYMDQTTKVAAVRTEYAIVGA 176

Query: 223 ------------------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
                              +   L    +  +E + RA+  + +KS F++++SHELRTPL
Sbjct: 177 ALAGMILLALLIPSGSLWVMFRRLRRTNAELEEAQVRAQASDKSKSEFISTVSHELRTPL 236

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            +I G   ++E      L+  + K  +    ++ + L  L++++LD  ++  G  E+   
Sbjct: 237 TSIKGALAMLESGKFAELDG-SAKRLLEMALKNAEVLHLLVDDLLDFGKLATGGLEIRPC 295

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           A  +  +V++ +  +     ++ +E     +       AD   + QV+ NLLSNA+KF+ 
Sbjct: 296 ATDIAGLVQDEVDRIDSYDADRQVECRYTGERGPLFAHADPARIAQVVRNLLSNALKFSP 355

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           +GG+V V+V         + +KD G GI   +   +   F Q   +      G GLGL I
Sbjct: 356 VGGKVFVSVRERC-GAIRVEVKDFGCGIPPCDQERIFEKFTQIDSSNTRQHSGAGLGLAI 414

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++ I+  H G+  + S    G      LP
Sbjct: 415 SKEIVEAHDGRIGVTSAPGRGSAFYIDLP 443


>gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
 gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
          Length = 1374

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 18/279 (6%)

Query: 230 VAKSLSDETRKRAEEENLAKSRF-LASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             K + +E++   + + + KSR  ++ MSH++RTP++ I+G ++++    +         
Sbjct: 624 TQKKIDEESKTLEQNKIIEKSRLRISMMSHDIRTPMSNIIGMADLLYDTPLSNH----QL 679

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  S   LLN+IN+ILD+S+IEAG+ E+          V E +  +  R Q K +
Sbjct: 680 HYLNIIKNSSNTLLNIINDILDMSKIEAGKLEIEYERFDFNSTVSEVVESMAQRVQAKGL 739

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403
           E+   IDP +  ++      + Q++ NLL N++KFT   G + +    T          +
Sbjct: 740 ELLSYIDPKIPQTLVGPSSRLNQILTNLLGNSLKFTDK-GEISIFCLLTDETDSEYVIRV 798

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKL 462
            +KD G GI +  +P +  +F Q    I     G GLGL I + ++     G   + S  
Sbjct: 799 EVKDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVQLAFNGSISVESHY 858

Query: 463 REGVEVIAI------LPNTRVLNFIPEDNHESTQYKCYA 495
             G    AI      LP    +   P  +    Q++ ++
Sbjct: 859 GHGSTFTAILKFKKFLPGETSIVLNPSQHQLEQQHQSHS 897


>gi|306845191|ref|ZP_07477767.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
 gi|306274350|gb|EFM56157.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
          Length = 609

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 188/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                    + +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGVTLAGSLAAMVILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPAQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRADNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|330808383|ref|YP_004352845.1| histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376491|gb|AEA67841.1| putative Histidine kinase, Unorthodox [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1187

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 10/264 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E          +++RA++ N AKS FLA+MSHE+RTP+NA++G  E+          +
Sbjct: 673 ISERRQLFEELRASKQRADDANRAKSTFLATMSHEIRTPMNAVIGMLELALKHADKGHVD 732

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  I   + S   +L LI +ILD++RIE+G   L+   ++L  +++  I + +  A+
Sbjct: 733 ---RSTIEVAYESASGMLELIGDILDIARIESGHLSLAPERVNLRALLQSVIRVFEGVAR 789

Query: 345 EKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ 401
           +KN+ +  + D       V  D    +QV+ NL+SNA+KFT  G   + V +  T     
Sbjct: 790 QKNLALSLQFDAAEGSPDVLMDPLRFKQVLSNLISNALKFTEQGQVAIKVRLSPTDRDDA 849

Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++ + D+G GI   ++  +   F Q     + A  G GLGL I++++    GG   +
Sbjct: 850 LQMHLEVNDSGIGIGPADLQRLFEPFAQVDNTRRMARNGAGLGLVISRNLCQMMGGSLHM 909

Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482
            S+   G +V   L  T VL+  P
Sbjct: 910 NSQPGTGTQVQVRLQLT-VLSTAP 932


>gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|317486683|ref|ZP_07945500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922066|gb|EFV43335.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 630

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +++AEE N AKS FL+ MSH++RTP++AI+G + + +     P   E   E I  I  + 
Sbjct: 236 KEQAEEANRAKSVFLSRMSHDIRTPMSAIIGLTAIAKKNAGDP---ERLNECIDKIALAS 292

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q  L+L+N+ILD+S+IE+G+ +L+     L  I+ +  +     A  K I     +DP +
Sbjct: 293 QFQLSLVNDILDVSKIESGKMQLASEPFDLAGIIDDVTLFTSSSATAKGIVFETSVDPRI 352

Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIA 413
             ++  D   ++Q+++NLLSNA+KF    G+V + V             + + DNG G++
Sbjct: 353 GRMYVGDPMRLKQILMNLLSNALKFVDENGKVTLRVESLRRTGRQEAVRLIVSDNGIGMS 412

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 +   F Q   A +    G GLGL I  ++ A  GG   + S+L +G      +P
Sbjct: 413 NAFQKRMFLPFEQ-DAAPRRKRSGSGLGLAIIGNLTALMGGSIAVDSELGKGTRFTVDIP 471

Query: 474 NTRVLNFIPEDNH-ESTQYKC 493
             R       D   E+ + +C
Sbjct: 472 LERTETAEKHDTAGENAEERC 492


>gi|311029650|ref|ZP_07707740.1| putative sensor-like histidine kinase yclK [Bacillus sp. m3-13]
          Length = 451

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 9/305 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
            ++ + T  ++   +L +  A +L   +   T +T ++ K + + +     KD++     
Sbjct: 156 ALITVLTYVLIIGSLLYLVAAFLLVNPIKKLTALTTNIAKGDFQQIKSIKRKDEIGELGR 215

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               ++ E  K        +  F++++SH+L++PL +I GF+  ++       + E    
Sbjct: 216 SFNRMTSELMK----LETMRKEFISNVSHDLQSPLTSIRGFAVALKENEF---SKEQQDH 268

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I +  + L  L   +L LS +E     L +    L   +R+  +  Q +  EK +E
Sbjct: 269 YLTIIQKESERLAKLSENLLKLSVLENKESLLEKENFRLDQQIRQVFLSHQPQWLEKKLE 328

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  + D +   + AD+  + QV  NLL+N++K++  GG++ V V     + Q I   D G
Sbjct: 329 LNLE-DVNKVEITADQLQLEQVWHNLLTNSIKYSNTGGKIKVEVKEIQKKVQVI-FSDTG 386

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E ++P +   F +   A   + QG GLGL I + I+  H G+  I+S+   G  + 
Sbjct: 387 IGIPEKDLPYIFDRFFKVDKARVRSGQGSGLGLAIVKKIIDLHKGEISIKSEHGVGTSIQ 446

Query: 470 AILPN 474
            +LP 
Sbjct: 447 IVLPK 451


>gi|309800487|ref|ZP_07694641.1| sensor protein YycG [Streptococcus infantis SK1302]
 gi|308115882|gb|EFO53404.1| sensor protein YycG [Streptococcus infantis SK1302]
          Length = 449

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 9/242 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L      ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALTEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + +  EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNETSHLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSISDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP     V   I ED  
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEIWEDEL 447

Query: 487 ES 488
           E 
Sbjct: 448 ED 449


>gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
 gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|254236867|ref|ZP_04930190.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|313109414|ref|ZP_07795374.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
 gi|126168798|gb|EAZ54309.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|310881876|gb|EFQ40470.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
          Length = 795

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  +P +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 232 AGIEYFWPDSPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 289

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              L+ L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 290 LVMLMAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 343

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 344 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 402

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E         N  K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 403 RKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 458

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          RA+EK +    
Sbjct: 459 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFAL 518

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 519 QLDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 578

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 579 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFL 638

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 639 LRLQLTQPAQGL 650


>gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           S88]
 gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
 gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O127:H6 str. E2348/69]
 gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli S88]
 gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15]
 gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IHE3034]
 gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UM146]
 gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263]
 gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2]
 gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli
           AA86]
 gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|89891696|ref|ZP_01203199.1| putative signal transduction protein [Flavobacteria bacterium
           BBFL7]
 gi|89516031|gb|EAS18695.1| putative signal transduction protein [Flavobacteria bacterium
           BBFL7]
          Length = 753

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                 E R RA++    K+ FL++++HELRTP+ A+ G + ++   T         KE+
Sbjct: 324 KNKSLIEERDRAQDAAKIKADFLSTITHELRTPMYAVTGLTHLLLENT----PRSDQKEH 379

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  SG++LL+LI+ IL+ +++EA + EL     SL   +++    L+ +++++N  +
Sbjct: 380 LETLQSSGEYLLSLIDNILNFNKLEANKVELESIPFSLKKRIQDLTTSLEGQSKDRNNRL 439

Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISI 405
             + D ++   +  D   + Q+++NL+ NA+KFT   G + +                 +
Sbjct: 440 QLEFDDAIPSRINGDPVKITQILINLIGNAIKFT-QNGNIWIRANRVKQIDNRCLIRFEV 498

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +DNG GI+E +   +  +F Q   +      G GLGL I ++++        + SKL  G
Sbjct: 499 EDNGKGISEEKQVAIFENFAQEESSTTREYGGTGLGLAIVKNLVELMQSDIKLDSKLGRG 558

Query: 466 VEVIA 470
                
Sbjct: 559 SIFSF 563


>gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
 gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
          Length = 1053

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 5/252 (1%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     KS F+A++SHELRTPL ++ G  +++       L   + +  +     +
Sbjct: 695 ERREIE---RLKSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLR-LLDIAQSN 750

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L+ L+N+ILDL +I AG+ +      S  +++   +   +  A ++++ +  +    
Sbjct: 751 TDRLIYLVNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEP 810

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD   + QV+LNL+SNA KF+  GGRV V      G      +KD G GI+    
Sbjct: 811 DRMVLADAGRLNQVLLNLISNACKFSHAGGRVEVWFE-VRGAEVMFFVKDEGVGISATHR 869

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            ++   F Q   +    + G GLGL I + ++    G+    S L EG       P    
Sbjct: 870 NSIFKPFSQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCPLAEP 929

Query: 478 LNFIPEDNHEST 489
            +  P++   ++
Sbjct: 930 ADAEPDETDAAS 941


>gi|150018205|ref|YP_001310459.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149904670|gb|ABR35503.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1036

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 5/258 (1%)

Query: 226  AELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            A  ++   L +  R++    E+    K  FL+ +SHE RTPLN I    + I        
Sbjct: 754  ALEKIQIKLLEAEREKNDTLEKALEMKDEFLSLISHEFRTPLNVINSAIQAI-DYFCSEE 812

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             ++  K+Y+  I  +    L L+N ILD++R  AGR ++++S I +I + +  +  +   
Sbjct: 813  LSDRLKKYLRMIRLNSFRQLRLVNNILDITRANAGRIKVNKSNIDIIFMTKAIVDSVYTY 872

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A +K+I+I          V  D++   +++LNLLSNA+KFT  G  + V +  +   G  
Sbjct: 873  ASQKSIDIIFSSSVKQKIVGIDDEKYERILLNLLSNAIKFTPEGKSISVKI-LSRRDGIC 931

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            I +KD G GI + +   +   FGQ   ++    +G G+GL + +  +   GG   ++SK+
Sbjct: 932  IEVKDKGIGIPQEKADIIFERFGQVDSSLSRQAEGTGIGLSLVKKFVEAIGGSISLKSKV 991

Query: 463  REGVEVIAILPNTRVLNF 480
              G      LP+  ++  
Sbjct: 992  GRGSAFSIFLPSESIVQE 1009


>gi|295398525|ref|ZP_06808559.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
 gi|294973248|gb|EFG49041.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
          Length = 618

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 4/227 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +S F+++ SHEL+TP+ A+ GF+E +    +   +     E++  + +    L +LI +I
Sbjct: 380 RSDFISNASHELKTPVTALQGFTEALLDGAIEDHDTAV--EFVKIMQKESNRLGSLIKDI 437

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LDL++IE  + + +   +   ++V +    L  RAQ+K+I + +  +     S   +   
Sbjct: 438 LDLAKIEQDQVQQTTELLEADELVEDVFQHLSGRAQDKHINLVKDDNSQPDVSFRGERGR 497

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV+ NL+ NA+ +    G V V +           I DNG GI + ++P +   F + 
Sbjct: 498 ILQVLTNLIHNAIIYNNPYGFVKVFIS-EQENMIQFKISDNGIGIPQEDLPRIFERFYRV 556

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           S    +A  G GLGL I ++I+ + GG   + S    G      +P 
Sbjct: 557 SKDRSTASGGTGLGLSIVRNILEHMGGGIEVDSVFGRGTSFTVYIPK 603


>gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 614

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 119/244 (48%), Gaps = 10/244 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+M+HELRTPL AI+GF+EV+         +ET     G I  +   LL+++N++
Sbjct: 243 KSDFLANMTHELRTPLTAIIGFAEVLRRSG---RLDETAARQAGHILDASNTLLSVVNDV 299

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD SR+EA   EL  +      +   C  +++ RA  K + +  +   +++ +  D   +
Sbjct: 300 LDFSRLEAAGLELDPAPFDPAAMASSCATLVEERAGAKGLAVVVETAEAIAPMNLDGSRL 359

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFG 425
            QV+LN LSNAVKFTA  G + V +       Q +    + D G GIA      +   F 
Sbjct: 360 SQVLLNFLSNAVKFTAR-GAITVRLSQVVEGDQAVLRGEVIDTGIGIAPENREAIFDRFS 418

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPE 483
           Q   A+     G GLGL I++ I+ + GG+  + S   EG      +  P        P 
Sbjct: 419 QADAAVSRRFGGTGLGLAISRRIIEHMGGRIGVDSVEGEGSTFWFEVRGPVA-DAPSAPT 477

Query: 484 DNHE 487
           D  E
Sbjct: 478 DIVE 481


>gi|170077056|ref|YP_001733694.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884725|gb|ACA98438.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 553

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 16/281 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +   +     AE+              ++  + A E    K+ FLA+ +HELRTP
Sbjct: 255 PRIWQEVEQEFAQELAEQLGTAIAHATLYQELEQLHQAATEAARLKNDFLANTTHELRTP 314

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I+GF  ++  E       E   ++I   H S  HLLNLIN+ILD+++IE+G+ +L  
Sbjct: 315 LNGIIGFLTLVLDEMADGRAEE--LDFIAAAHESALHLLNLINDILDIAKIESGKLDLDL 372

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVK 381
             ISL +++       + + Q KN+     +        ++ D + + QV+LNL+ NA+K
Sbjct: 373 QPISLGELLDNLNNFARPQLQTKNLTWEILVPESHDDIILYGDYQRLFQVLLNLVGNAIK 432

Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           FT  GG + + V                   IS+ D G G+A      +  +F Q     
Sbjct: 433 FTNAGG-ITINVELVFKPVIHDDQQFPGMVKISVIDTGIGVALDMQSKLFQNFSQVRGGH 491

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAI 471
                G GLGL I++ ++   GG+    S     G  V   
Sbjct: 492 TRKYGGTGLGLAISKKLVEACGGKISFYSMGEGLGSTVTFS 532


>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 139/330 (42%), Gaps = 20/330 (6%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
            +            + L   L+     + +I   +          +   D L A    A 
Sbjct: 280 TIEAGPYEEPPHTAMMLPLRLSGQTEVYGFIVAGVSARRALDEEYRNFYDQLTATYNTAI 339

Query: 233 S---LSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNE 285
           S     ++ +KRAE     + +K+ F +++SHE RTPL  +LG  E +++   +      
Sbjct: 340 SNVYAYEQEQKRAEALAAIDRSKTLFFSNVSHEFRTPLTLMLGPLEELLQQHGLDGHT-- 397

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +  +   HR+   LL L+N +LD SR+EAGR +     + L ++  +     +   ++
Sbjct: 398 --RVQVEATHRNALRLLKLVNNLLDYSRVEAGRVQAVYQRLDLQEMTIDLASSFRSIIEK 455

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +E+     P  +S +AD +   +++LNLLSNA K+T   G + VT+         + +
Sbjct: 456 AGMELNVHCSPLSASYYADRQMWEKIVLNLLSNAFKYTLQ-GSISVTLE-EQENMAVLKV 513

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + E+P +   F +         +G G+GL +   ++  H G   + S    G
Sbjct: 514 KDTGVGIPQKELPHMFERFHRIENTAGRTHEGTGIGLSLVHELVHLHAGTITVESIEGTG 573

Query: 466 VEVIA-------ILPNTRVLNFIPEDNHES 488
                        LP  +V+    + + E+
Sbjct: 574 STFTVCIPVGKEHLPVQQVIEDKKDIDTEA 603



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG-DIHRSGQH----LLN 303
            K+ F+  +SHEL+TPL +++GF+++      G  N +  ++ +   I+         + +
Sbjct: 1028 KNDFIGMVSHELKTPLTSLVGFTQL------GLRNAQKNQDSLNFSIYEKTNRQLIKMSS 1081

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            LIN  L++S++E+G+  L  +   L +++RE I    L A   + ++          + A
Sbjct: 1082 LINGFLNVSQLESGKIHLHLTDFRLDELIREMIADAGLAASGYDFQVDCVE----LIINA 1137

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   +  V+ NLLSNA+K+ A    + +    T      +S+ D G GI E +I  +   
Sbjct: 1138 DRNKIGTVLTNLLSNAIKYGANSRVISIACSCT-DGYARVSVTDQGIGIKEADISKLFDR 1196

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            + +          G G+GL ++  I+  H G+    S+  +G  +   LP  ++  
Sbjct: 1197 YYRIENNQTQHISGFGIGLYLSAEIIGRHHGKIWAESEPGKGTTLFVELPMMQISE 1252


>gi|332701527|ref|ZP_08421615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 945

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 13/250 (5%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    + ++ AE  + AKS FL++MSHE+RTPLN+I    E++         +E    
Sbjct: 547 RLEQELRQAKETAESASRAKSTFLSNMSHEIRTPLNSIQSVIELL----PSLDISEEAAS 602

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+    +S  HLL LIN +LDLSRIE+G+ EL+        +++  +  L + A  K ++
Sbjct: 603 YVRIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLD 662

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402
           +   +   +   +  DE  + Q+++NL+ NA+K+T   GR+ ++V   +  G+       
Sbjct: 663 LAVAVADDVPVRLMGDELRLGQILMNLVGNAIKYTDT-GRISISVKRDAACGREDGRIRL 721

Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+KD G GI +     +   F       + + +  GLGL I+  ++   GG+  + S+
Sbjct: 722 LFSVKDTGIGIHQDRCEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIWVESE 781

Query: 462 LREGVEVIAI 471
           L +G      
Sbjct: 782 LGQGSTFCFT 791


>gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
 gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
          Length = 1171

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +S   ++  +A +   A++ FLA +SHELRTP+ A+LG  E++        + 
Sbjct: 622 ITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNES- 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  + +   S + L   +N+ILD S+IEA + +L  +   L D +   +   +  A 
Sbjct: 681 ---QLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATAD 737

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + ++      P     V  D   + Q+I NLLSNA+KFT   G + + V   S +    
Sbjct: 738 LQGLDFIVYWQPDARLLVQVDALRLNQIITNLLSNALKFTEK-GSIRICVEQ-SEQHFTF 795

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ E +I ++   F Q   +I     G GLG+ I  +++   GG   + S++ 
Sbjct: 796 EVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEID 855

Query: 464 EGVEVIAILPN 474
           +G  V   LP 
Sbjct: 856 QGTTVRVSLPV 866


>gi|218889743|ref|YP_002438607.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
 gi|218769966|emb|CAW25728.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
          Length = 795

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  +P +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 232 AGIEYFWPDSPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 289

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              L+ L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 290 LVMLMAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 343

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 344 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 402

Query: 240 KRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E  N         K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 403 RKLEALNQELANSNCLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 458

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          RA+EK +    
Sbjct: 459 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFAL 518

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 519 QLDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 578

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 579 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFL 638

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 639 LRLQLTQPAQGL 650


>gi|254242660|ref|ZP_04935982.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
 gi|126196038|gb|EAZ60101.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
          Length = 795

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  +P +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 232 AGIEYFWPDSPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 289

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              L+ L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 290 LVMLMAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 343

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 344 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 402

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E         N  K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 403 RKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 458

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          RA+EK +    
Sbjct: 459 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFAL 518

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 519 QLDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 578

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 579 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFL 638

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 639 LRLQLTQPAQGL 650


>gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Pestoides F]
 gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides F]
          Length = 926

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 430 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 485

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 486 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 545

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 546 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 603

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 604 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 663

Query: 469 IAILPN 474
              +P 
Sbjct: 664 AIRIPL 669


>gi|298385951|ref|ZP_06995508.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298261179|gb|EFI04046.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1346

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N  K RF  ++SHE RTPL  ILG  EV+    +G     T    I  I+++  H+ NL
Sbjct: 817  LNQVKLRFFTNISHEFRTPLTLILGQIEVLMQMDLGT----TVYNRIQRIYKNAWHMRNL 872

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I+E+LD  + E G  +L     +L+   R+  +     AQ+K I           SVW D
Sbjct: 873  ISELLDFRKQEQGYLKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFD 932

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               +++VI NLLSNA K+T+  G + V V   + +   +S+ D G GI    I  +   F
Sbjct: 933  PIQLQKVIFNLLSNAFKYTSNKGNITVEVRKVASQ-AVVSVCDTGIGIPVEHISKIFDRF 991

Query: 425  GQGSIAIKSA--EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q   A  S+    G G+GL +A+ IM  H G+  + S + EG + I  LP 
Sbjct: 992  YQTENASSSSSFTLGTGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLPL 1043


>gi|118445102|ref|YP_879165.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135558|gb|ABK62602.1| two-component sensor histidine kinase, putative [Clostridium novyi
           NT]
          Length = 463

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              K+ F+AS+SHELRTPL +I G++  +      P N   +++ +  I      L NL+
Sbjct: 239 EKLKTEFIASISHELRTPLTSIKGWTVAL--NLCDPNNKSEFEDGLKIIEEETDRLSNLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            E+LD S++ +G+  L +  + + +++R     LQ RA + NI +  +    + +++AD 
Sbjct: 297 EELLDFSKLSSGKITLKKDYVDIHELLRYLQKQLQPRASKDNINLSLECKNEIPNIYADI 356

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++Q  +N+L NA+KFT+  G V +T+  ++     ISIKDNG GI   ++P V   F 
Sbjct: 357 NRLKQSFMNILDNALKFTSSDGEVKITLS-SNKDSVIISIKDNGCGIPLDDLPRVTEKFY 415

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +G  +        G+GL I   I++ H G   I S+  +G EVI  LP
Sbjct: 416 KGQNSKSKN----GIGLSICNEIISLHNGNLQILSEENKGTEVIVCLP 459


>gi|254784846|ref|YP_003072274.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237684144|gb|ACR11408.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 573

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 163/452 (36%), Gaps = 55/452 (12%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWF------------TQNPIFPMWSLITLAVYAANLSLG 90
           +     + +  +  L++  +  +                 +   W++    +      L 
Sbjct: 10  KIRLGNTLLAAVGGLVLTVLYIYACEVGDCLTSPQEVGITLIVFWTVNIGFILTFLTRLN 69

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
            +     + + E                + W  L  +       E   +      L+ + 
Sbjct: 70  LRFREPSLTLPE----------------MYWAALFCLYIFYQLDELRHLVLLFLFLVTIF 113

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFK 209
            +                 +               +I     L   L F F  IT  +  
Sbjct: 114 GTFRLTQSQFITYVAVITLIFTFNQFDYATRKGTPEIRQTDHLIAWLVFTFGNITLGVIN 173

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S +  L  +                  E     E+   AKS FLA+MSHELRTPLN ++G
Sbjct: 174 SAMIRLRTR----------------LREKNVALEKALNAKSTFLANMSHELRTPLNGVIG 217

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              ++E   +    N   ++  G I  S ++LL +IN ILD S+IEAG+  L+++     
Sbjct: 218 MVSLLEETPL----NAEQRKISGIISTSSKNLLEVINNILDFSKIEAGKVALTQAPFDPH 273

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-- 386
            IV E   +    A++K ++    I  +L   +  D   ++QV+LNL+SNA+KFT +G  
Sbjct: 274 KIVNEIYKISTANARDKKLDFRLNIARNLPKRLIGDAFYLKQVLLNLISNAIKFTQMGYV 333

Query: 387 -GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
              + V             I D+G GI + +   V   F Q   +      G GLGL I+
Sbjct: 334 EFAIEVIKLEADRTFLRFRISDSGVGIDKKQQAVVFEKFAQEDNSTTRQFGGTGLGLSIS 393

Query: 446 QSIMANHGGQFLIRSKLREGVEVIA--ILPNT 475
             I+A+ G Q  + S   +G        LP  
Sbjct: 394 SQIVASMGSQINLSSAKGQGSSFWFDLELPVE 425


>gi|283797817|ref|ZP_06346970.1| histidine kinase [Clostridium sp. M62/1]
 gi|291074502|gb|EFE11866.1| histidine kinase [Clostridium sp. M62/1]
 gi|295091968|emb|CBK78075.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Clostridium cf.
           saccharolyticum K10]
          Length = 468

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 145/336 (43%), Gaps = 11/336 (3%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L +A+  + +  + +   +  +           +++       S+   L         +
Sbjct: 140 ILRLAVPYTGMREYTIM--LLPAILLSFTVALIGSVLEADRFSQSITKPLLEISREMIKV 197

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                  + +      E + +        +   E   R E+E   +  F ++ SHEL+TP
Sbjct: 198 NGDYTDFHFEKCEY-PEINVIADTTTRMSTNVREYLNRLEQEKQIRQEFFSNASHELKTP 256

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           + +I G+ E++  +T    N E  K+++  I +    +  LI++IL +SR+E+G  +   
Sbjct: 257 ITSIRGYVELL--DTPMADNAEMRKDFLSRIKKEAVRMTRLIDDILMISRLESGGAQAEL 314

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I  ++I RE    ++  A+E+ I++    D  L  + AD + M ++  NLLSNAVK+ 
Sbjct: 315 KDIRTLEIAREAASSVEGMAKERRIQVETDADDFL--ICADARQMEELFTNLLSNAVKYN 372

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGRV +++         I + DNG GI +  +  +   F +        + G GLGL 
Sbjct: 373 LDGGRVWLSLKKERKDMVLI-VSDNGVGIPKESLGRIFERFYRVDKGRSRKQGGTGLGLS 431

Query: 444 IAQSIMANHGGQFLIRS--KLRE-GVEVIAILPNTR 476
           I + I+  + G   + S  +  + G   I  LP  +
Sbjct: 432 IVKHIVNFYHGTVKVVSSQEEGKRGTSFIVRLPIAK 467


>gi|290892560|ref|ZP_06555553.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557869|gb|EFD91390.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 610

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|162451352|ref|YP_001613719.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161161934|emb|CAN93239.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 636

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 162/447 (36%), Gaps = 21/447 (4%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF-TQNPIFPMWSLITLAVYAANLS 88
           +  ++            +          L A       T          I          
Sbjct: 208 QASWESRRREAEEAGRIQAEEAREQLARLQAVTAALARTSTAGESACVAIRAIGTILRAQ 267

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
             +  + +D            L +         +    +      P  L +++   +++ 
Sbjct: 268 GARAYLRTDDP--------RGLRLVASTGDDGTSPFPAIPSDPEQPIVLALFRGELVILP 319

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
                       +A   +   +         + +   D+     +             L 
Sbjct: 320 DPDEVEGAAT-RFAPGPTLSAMASPCLVALPLRIQGRDLGGLVFVIEGPCRLDPAIRKLV 378

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +  +   E++ L    +         R  A+E    + + L  ++H+LR PL+AI+
Sbjct: 379 ATMAEQCAQAVERNSLFESEKR-------ARAEAQEAVRQREQMLGIVAHDLRNPLSAIM 431

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             + +++ E    ++ E +++ +  I R+ +H   LI ++LD++ I+A R  +  +   +
Sbjct: 432 LRAALLKRELASRVDEEKWRDGVRTIERAARHSNRLIADLLDVASIDAHRLSILPAPHEV 491

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            D+V +    ++L A  +++ +  ++   L  V AD   + QV+ NLL NA KFT  GG 
Sbjct: 492 SDLVADATETVRLGATGRSLSVHVEVPTDLPRVLADRDRVVQVLSNLLGNAHKFTPDGGT 551

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + V           I ++D+G GIA   +  +   +       +    G GLGL IA+ I
Sbjct: 552 IGVRAEAL-DGEVGIHVRDSGVGIAAEHLSRIFDPYWTRPNNRQR---GTGLGLAIARGI 607

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475
           +  HGG+  + S++ +G      LP  
Sbjct: 608 VQAHGGRIWVESRVGDGSTFSFTLPLA 634


>gi|49482272|ref|YP_039496.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282907066|ref|ZP_06314914.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910045|ref|ZP_06317853.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912293|ref|ZP_06320089.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|283959503|ref|ZP_06376944.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295429316|ref|ZP_06821938.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589182|ref|ZP_06947823.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81652064|sp|Q6GKS6|WALK_STAAR RecName: Full=Sensor protein kinase walK
 gi|49240401|emb|CAG39047.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282323989|gb|EFB54305.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326111|gb|EFB56416.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329965|gb|EFB59486.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283789095|gb|EFC27922.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295127075|gb|EFG56719.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577693|gb|EFH96406.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436840|gb|ADQ75911.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195245|gb|EFU25633.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 608

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++  ++      + I        
Sbjct: 428 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSTKDT--TFIRDIPKKTIFTE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 486 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 603


>gi|330720537|gb|EGG98819.1| Sensor protein torS [gamma proteobacterium IMCC2047]
          Length = 995

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + L  Q    DLI       +  +  RK+AE+ + AK+ FLA MSHE+RTP+N ILG   
Sbjct: 455 RTLQLQQTNRDLIEVA----AKHEAARKQAEQASRAKTTFLAMMSHEIRTPMNGILGTLR 510

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++  ++    +E  + +   I+ + + LL+++N++LD S I+AG+ E+ +    L  +V
Sbjct: 511 LLDKTSL----SEKQRYFTNIINSASRSLLDILNDVLDFSSIDAGKIEVGQLPFDLHALV 566

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390
            E I ++   A+EK + +    D  +   +  D   +RQV+LNL++NA+KFT  GG  + 
Sbjct: 567 DEVITLMAPTAEEKGLYLKATFDTDIDRPLKGDPSKLRQVLLNLITNAIKFTQQGGVELR 626

Query: 391 VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V     +      ++ I D G GI E  +  V   F Q + ++   E G+GLGL I Q +
Sbjct: 627 VNTQEVANHHVELHLEIIDTGIGIDESMMEAVFEPFTQVNTSLTKKEGGIGLGLAICQRL 686

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
           M   GG          G  +   L
Sbjct: 687 MMAMGGTIEASRAAHGGTCMAVQL 710


>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 786

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 23/385 (5%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           +  + V      L ++   LV        YL I      L  LS + +    L  A FL+
Sbjct: 293 QRGIAVIAAGCPLGYSNWGLVIKMDTKEAYLPILH-VVQLEVLSGAVVIGLGLIAAYFLA 351

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
                         S          +   +   F  ++ +  +    I + + E+D    
Sbjct: 352 RSFTHPVRQLTRAASRVTEGDYETMVPVKSADEFGTLSTNFNEMTTAIRARRMERDR--- 408

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        +     +  K  FLA + HELR PL+AI   +  + L  +   ++  
Sbjct: 409 -----------AEEALRHADRRKDEFLAMLGHELRNPLSAI---ANAVRLWNVAGDDHSA 454

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +   G I R   +L  L++++LD++RI  G+ EL +  + + + +   +  L+    ++
Sbjct: 455 VELAHGVIERQTDNLSRLVDDLLDVARITEGKIELRKRPVDVNESIHRVVEALRPAIDQQ 514

Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             E+   ++      V AD   + Q+I NLL+NA+K+T  GG + +      G    IS+
Sbjct: 515 RHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKYTRKGGEIRIEARR-EGHEAVISV 573

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
            D G GIA   +P +   F QG  ++     G+G+GL + + ++  HGG     S+ +  
Sbjct: 574 NDTGIGIAPRMLPQIFDLFTQGDHSLDRPTGGLGIGLSLCRRLVELHGGTITAFSEGVGR 633

Query: 465 GVEVIAILPNTRVLNF--IPEDNHE 487
           G      LP         +PE   +
Sbjct: 634 GSTFTVHLPTISAPESTMLPETTAQ 658


>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1201

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E         E ++ A++ N AKS FLA++SHE+RTP+NA++G  E+           
Sbjct: 687 ISERRKLVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKR---AHQG 743

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +   H S + LL LI +ILD+ RIE+G   L+   + L  +V     +   +A+
Sbjct: 744 QIDRTSLEVAHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDGQAR 803

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K +     I PS    V  D    +Q++ NL+SNA+KFT   G+V +++          
Sbjct: 804 QKGLAFDVVIAPSARCHVLLDPLRFKQILSNLISNAIKFTGQ-GQVRISLCLREEAPSAP 862

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D G GI + ++  +   F Q +   + A  G GLGL I +S+    G    I
Sbjct: 863 PSLELEVRDTGIGIHDDDLQRLFNPFVQANPHSQGARAGTGLGLAICRSLCEMMGASLSI 922

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +S    G +V   +P  RV + +P    E+  
Sbjct: 923 KSVPDFGTQVRFSVPLQRV-DALPPQVLEADD 953


>gi|298374416|ref|ZP_06984374.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268784|gb|EFI10439.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1369

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 6/258 (2%)

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E  +    +    KE
Sbjct: 820  ERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLERHSGSEESCGD-KE 878

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
             +  I R+   L+  +NE+LDLS +  G          L   + +        A    I 
Sbjct: 879  ILRTISRNTNRLIRHVNELLDLSVLTRGVPSPHIVCADLSRFLEDISETFIPLADSYKIA 938

Query: 350  IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIK 406
                I P +S  + D+  + QV+ NLLSNA K+T  GG V  +       S     + I 
Sbjct: 939  FTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSASLEQSSSDAVMTLRIT 998

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D+G GI    +P +   + +G+       +  G+GL   + ++  H       S+L +G 
Sbjct: 999  DSGIGIPPESLPYIFDRYYKGASIAFRRSESSGIGLAYTKELLELHKATIQCESELGKGS 1058

Query: 467  EVIAILPNTRVLNFIPED 484
                 LP +      PE+
Sbjct: 1059 VFTVALPISE--EAYPEE 1074


>gi|260426759|ref|ZP_05780738.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
 gi|260421251|gb|EEX14502.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
          Length = 346

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 8/240 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A+LGF E ++       +      ++G +      +
Sbjct: 108 LEQVGQMRRDFVANVSHELRTPLTALLGFIETLK--GPAREDALARDRFLGIMEAEAGRM 165

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LSR+EA         + L  +VR  +  L   A+E  +E+  ++      V
Sbjct: 166 ERLVGDLLSLSRVEADERVRPTEPVDLPSMVRSVLSGLAPLAEEAGVELAFELPEGALEV 225

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEG 415
             D   +RQV++NL+ N VK++  G  V V+V          G    I++ D GPG    
Sbjct: 226 PGDPDQLRQVVVNLVENGVKYSGRGAEVKVSVSGPEYHSRLRGDAVVITVSDTGPGFDPL 285

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            IP +   F +          G GLGL I + I+  H G+  I S+   G +   +LP  
Sbjct: 286 HIPRLTERFYRVDNHRSREMGGTGLGLAIVKHIINRHRGRLRIESRPGAGAQFRVVLPAR 345


>gi|303247580|ref|ZP_07333851.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491060|gb|EFL50954.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 839

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTP+N I+G +E+     +        +EY+    +S   LL+++N+IL
Sbjct: 448 SEFLATMSHEIRTPINGIMGMTELALQTDLTG----EQREYLDLARQSALSLLDIVNDIL 503

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D SRIEAGR ELS +  S   ++  C+ +    A      +   + P +   +  D   +
Sbjct: 504 DFSRIEAGRVELSAAPFSPRRMLGRCLRLFDTLAARHGNTLSLSVHPDVPETLIGDAGRL 563

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----------------ISIKDNGPGI 412
            QV+ NL+SN +KFT   G V + V   +                      S+ D G GI
Sbjct: 564 GQVVANLVSNGLKFT-RNGDVRLCVEPDTQNEILCADPSDTPPGNRVSLLFSVIDTGIGI 622

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              +   +   F Q   ++     G GLGL I  +++A  GG+  + S+  +G      
Sbjct: 623 PAAKQDRIFEPFTQLDGSLTRGVGGTGLGLSICNNLVALMGGRLWLSSRPGKGSTFYFT 681


>gi|317155002|ref|YP_004123050.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316945253|gb|ADU64304.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 688

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/498 (18%), Positives = 176/498 (35%), Gaps = 37/498 (7%)

Query: 13  GLLISPTGDHLGLEYPSKMDFD--REIITLHVESLFRVSPILPLFVLLVANI---GTWFT 67
           G +     + +   +  + +F    E     +E+L    P     +L+  N+   G W+T
Sbjct: 194 GRINRAATERVLPRFAGRAEFSWVGETSMAELETLLASLPQDHACLLVSYNLDRLGRWYT 253

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
                   S+                     K GE   +   +L      G     +   
Sbjct: 254 YGEAMEHLSMAFAVPMYGFWDFFLGNGQVTGKPGEPAGFVGGVLASGHHQGALAATMAAR 313

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFML-PYAVFLSFFPVVVALSTQAIMSMHVLD 186
                  + + +   +        + +  + L P  V      V   LS        +  
Sbjct: 314 IMAGEQADDIPVMAQSANRPMFDYAVMKKYGLDPDLVPSGSIVVNKPLSMIDRYRFEIAA 373

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           I L  ++  A            +     L+       L   +E   +   E     E+ N
Sbjct: 374 ICLVMVVMLAAILLLLANIRARRLAEAELARF--NRSLEEIIEERTAELVERSLDLEQAN 431

Query: 247 LA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN--------------- 284
            A       K+  L ++SH+LRTPL ++LGFS++I+ +                      
Sbjct: 432 AALTKLDELKTAVLNTVSHDLRTPLTSVLGFSKLIDRDFNRHFLPLAMEGGSECSAPDDL 491

Query: 285 ----ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E  +  +  I + G  L  L+N+ LDLS++E+G    +++ +    ++   + +L+
Sbjct: 492 RAKGERIRANLAIIEQEGGRLTRLVNDFLDLSKLESGGAIWNDAPLDPAPLIERAVPVLR 551

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               +  +     +   L  + AD   + QV+ NL+ N  KFT+  G V ++   T    
Sbjct: 552 GYFTDPAVTFEIDVAGPLPRITADPDRLLQVLGNLVGNGAKFTSR-GTVRLSASATDQGW 610

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE--QGVGLGLPIAQSIMANHGGQFLI 458
             +++ D G GI    +  V  +F Q      +    +G G+GL I + I+  +GG    
Sbjct: 611 LRVAVSDTGVGIPPEHLARVFETFYQVRGDTTNGHDMRGSGMGLAICRRIVGRYGGTLTA 670

Query: 459 RSKLREGVEVIAILPNTR 476
           +S   +G   I  LP + 
Sbjct: 671 QSTPGQGSVFIFTLPPSP 688


>gi|266619368|ref|ZP_06112303.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288869123|gb|EFD01422.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 329

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 140/308 (45%), Gaps = 10/308 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAE 227
           VV +    +  + V  ++   +   +L + T I+  +   +   L+   E    D+  + 
Sbjct: 11  VVVILMYVLFGILVFTVTFMILQEKSLRYITKISDAMQNISEGDLNVTVEVEGDDEFSSM 70

Query: 228 LEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                 + +E ++   +  E    K+  + +++H+LRTPL +I+G+ E++  +    L+ 
Sbjct: 71  AANLNKMVEELKELMDKERESERTKNELITNVAHDLRTPLTSIIGYLELLSGDV--KLDP 128

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+YI   +   + L  LI ++   +++  G+  +  + + ++ ++ + +        
Sbjct: 129 ELQKKYINIAYVKTKRLEKLIEDLFGFTKMNYGKLTMHVAQVDVVKLLSQLLEEFYPSFV 188

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +KN+    + +     + AD   + ++  NL++NA+K+ A G R+ V +         +S
Sbjct: 189 DKNLSYELQSNVPAKVITADGNLLARLFDNLINNAIKYGADGKRIMVKLHA-DDEIVTVS 247

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + + G  I   E+P +   F +   +  +   G GLGL I+++I+  HGG   + S L  
Sbjct: 248 VINYGYVIPADELPLIFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGTITVTSDL-S 306

Query: 465 GVEVIAIL 472
           G      L
Sbjct: 307 GTVFTVKL 314


>gi|297569748|ref|YP_003691092.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925663|gb|ADH86473.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 496

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 17/320 (5%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE--- 227
           V A  +    +     +    +   AL     +   + +S  + L     K   IA    
Sbjct: 180 VFAKISNLRETGEQAAVIAVLITIGALFIGLLVAAVVTRSITRPLQVIKAKTREIAHGNF 239

Query: 228 -----------LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                      ++      +    + +E +  KS F A MSHELRTPL +I   + ++  
Sbjct: 240 QGDLQIASPPIIKELAIALNSMCHKLQELDNLKSAFFADMSHELRTPLASIKEGTHILLD 299

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
              G +NN   +  +  I +    L+N +N +LDL+R+EAG      S  SL  +VR+ +
Sbjct: 300 RVGGEINNHQQR-ILLIISQESDRLINRVNSLLDLARMEAGMVVDHYSRTSLSTLVRDAL 358

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             LQ  A+ K + I      +L  V  D++ + QV+ NL+ NA+KFT  GG + +T    
Sbjct: 359 QGLQPLAEAKGVRI-VNHIAALPPVNVDQERIMQVVRNLVGNAIKFTPEGGTITLTAT-V 416

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   ++++D G GI EG++  +   F Q   A     +G GLGL + + I+  HGG+ 
Sbjct: 417 RDKMLEVAVQDTGIGIPEGDLERIFLKFQQVLPARSDKVKGSGLGLAMVKQIILAHGGKV 476

Query: 457 LIRSKLREGVEVIAILPNTR 476
              S++ +G      LP   
Sbjct: 477 WATSQIEKGSTFYFTLPLAE 496


>gi|218531747|ref|YP_002422563.1| Hpt sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524050|gb|ACK84635.1| Hpt sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 909

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 7/321 (2%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++     +A +   +   H              +        L   N +  +       L
Sbjct: 189 VTRPLAALARTMDGVRLGHDYSRRAEAGSGEVGALAESFNDLLRAVNERDRAIARYNAGL 248

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+ +      E ++ A+E N AKS FLA+MSHE+RTP+N +L  +E++    +     
Sbjct: 249 EEEIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----P 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I RSGQ LL +IN+ILD +++EAGR E+    +S  D+    + +   RA+
Sbjct: 305 PRQQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERAR 364

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401
              +++  +ID  +   +  D   + QV+ N +SNA+KFTA G   V + +   +     
Sbjct: 365 SAGLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEREASGPVL 424

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I++ D G GI +  +  + T+F Q   +I     G GLGL IA+ ++   GG+  + S+
Sbjct: 425 RIAVFDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIVAMGGRVGVESR 484

Query: 462 LREGVEVIAILPNTRVLNFIP 482
           L EG    A +P        P
Sbjct: 485 LGEGSTFWARIPVAGAEGAEP 505


>gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 662

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 10/268 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 247 TERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 306

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                     + +G I  S      LI+++LDLS +  G+ +L    + L  ++ E I  
Sbjct: 307 DNTSP---LYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLCGVLGEAIGA 363

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K +++  ++    S V  D   ++QV  NLLSNA+KFT   GR+ V +    G
Sbjct: 364 QELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVAL-QADG 422

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I+++D G GIA   +  + + F Q          G+GLGL I Q ++  HGG    
Sbjct: 423 NHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTA 482

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDN 485
            S+    G      LP       +P+  
Sbjct: 483 ASEGHGHGATFTVRLP-----QHLPDAE 505


>gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
 gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
          Length = 1205

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +S   ++  +A +   A++ FLA +SHELRTP+ A+LG  E++        + 
Sbjct: 654 ITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNES- 712

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  + +   S + L   +N+ILD S+IEA + +L  +   L D +   +   +  A 
Sbjct: 713 ---QLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATAD 769

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + ++      P     V  D   + Q+I NLLSNA+KFT   G + + V   S +    
Sbjct: 770 LQGLDFIVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEK-GSIRICVEQ-SEQHFTF 827

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ E +I ++   F Q   +I     G GLG+ I  +++   GG   + S++ 
Sbjct: 828 EVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEID 887

Query: 464 EGVEVIAILPN 474
           +G  V   LP 
Sbjct: 888 QGTTVRVSLPV 898


>gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 673

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 8/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++  ++ +S  D  R++AEE   A+  FLASMSHE+RTPLN I+G + ++E   +    +
Sbjct: 140 VSRHKMPRSQLDLARRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEETNL----D 195

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++YI  +  S   L+ LI++ILDLS+IEAG  ++++   +L ++V+      +L+  
Sbjct: 196 PKQRDYINILKHSSGILMGLISDILDLSKIEAGELQVNQREFNLTELVQSLRHTFELKIG 255

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           ++ + I   IDP L + +  D+  + Q+++NLL NA KFT  G     V +         
Sbjct: 256 QRPVSISASIDPQLKTWLVGDDMLLNQILMNLLGNAEKFTREGEIAINVQLDSWQEDKCW 315

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               + D G GI + ++  +  ++ Q    I+    G GLGL I++ ++   GG  ++  
Sbjct: 316 VTFQVCDTGIGIQKDKLELIFQNYKQAEQEIRENYGGTGLGLAISKQLVELQGGSIVVEE 375

Query: 461 KLREGVEVIAILP 473
                      LP
Sbjct: 376 ADGFSTCFSFTLP 388


>gi|186683853|ref|YP_001867049.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466305|gb|ACC82106.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 648

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 12/259 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  + E +       L  E  +E++  ++     L  
Sbjct: 392 ELNDAKSQFISNVSHELRTPLFNIKTYIETLHD-YGEDLGLEERQEFLQTVNHETDRLTR 450

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR + +   + L   + + +   QL A++K +E+ Q++D +L  V  
Sbjct: 451 LVNDVLDLSKLESGR-QYNFDGVDLAQAIEQTLRTYQLNAKDKGVELLQEVDTNLPLVMG 509

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------GRGQYISIKDNGPGIAEGE 416
           +   + QV  NL+ NA+KFT  GG+V +                  I I D G GIA  +
Sbjct: 510 NYDLLVQVFGNLIGNALKFTKAGGKVAIRAYQLDFKPNHSQSSPVRIEISDTGIGIATED 569

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
             ++   F +         +G GLGL I ++I+  H  +  + S++  G      L    
Sbjct: 570 QHSIFERFFRVEN-RVHTLEGTGLGLSIVRNIIDRHRSKVHLVSEVGIGTTFWFDLAAFE 628

Query: 475 TRVLNFIPEDNHESTQYKC 493
            +      E   E+++   
Sbjct: 629 EKAPPIQVEAITEASKITT 647


>gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           CFT073]
 gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972]
 gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli
           CFT073]
 gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972]
 gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ABU 83972]
 gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1]
 gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli
           RN587/1]
 gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 778

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|265750539|ref|ZP_06086602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237435|gb|EEZ22885.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 634

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 374 LIAIYYIIRINHLKHHLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 433

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +     +Y   I ++   LL+LIN+ILD+SR+E+G+ +       ++++
Sbjct: 434 ---SVLVSDDSSPAEKAQYCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEECDVVEL 490

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +   +   ++ +     +   +   +  D + ++QV++NLLSNA KFT   G + +
Sbjct: 491 CQTALSTAE-YGRKTSALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 548

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 549 AIAIDKQHQQLELSVSDTGCGIPSDKSDRVFERFEKL----NEYSQGTGLGLAISRLIVE 604

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 605 NLGGKIWVDKDYTEGARFVFTHPLTK 630


>gi|220929661|ref|YP_002506570.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999989|gb|ACL76590.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 463

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             + I LA  +   L   T     + + N+ +   ++  D++    +    ++ E +KR 
Sbjct: 182 GTISIVLANSIIHPLKNVTGAAELMAEGNLDVRLIKSRNDEIGKLSDTLNYMASEIQKR- 240

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                 K+ F++++SHELRTPL +I G++  I  +     + E   + +  I +    L 
Sbjct: 241 ---ERIKNDFISTVSHELRTPLTSIKGWANTIIDDDYS--DREILSDGLNIIVKESDRLT 295

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++ ++LD SR  +G  EL +    +  I+      +   A++  I    K +  + ++ 
Sbjct: 296 EMVEDLLDFSRFVSGNVELKKEKTDVCSIIDYIEKQMSGMAKKGKIIFSVKCEK-VPTIV 354

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + Q+++NLL NA  FT   G V ++  +         ++D G GI+  E+P V  
Sbjct: 355 LDKNRITQLLINLLGNAFNFTPKNGMVALS-SFLENDNIVFRVEDTGCGISPEELPLVTE 413

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +G  +        GLGL I   I+  H G   I S+L +G  V   +P
Sbjct: 414 KFYKGKSSNSH----TGLGLSICDEIVKLHNGSLEIESELDKGTIVTVRIP 460


>gi|87307413|ref|ZP_01089558.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
 gi|87290153|gb|EAQ82042.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
          Length = 672

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTP+ AILG++E++  +      +     ++  I ++G+ L+ +IN+I
Sbjct: 287 KTEFLANMSHEIRTPMTAILGYAELLAQQ----ETDLEKLHFLKVIRQNGEFLVEIINDI 342

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LDLS+IEAG+ +++   + L  ++ E   ++ +RA E +IE       ++   + +D K 
Sbjct: 343 LDLSKIEAGKLDITLEPLELSRMIEEIQSLMLVRAAENDIEFNVDFAATVPERIRSDSKR 402

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +RQ+++NL+ NAVKFT   G V + V   + R Q   + D G G+ + ++  +   F Q 
Sbjct: 403 LRQILINLIGNAVKFTQE-GSVRLVVSPDAERIQ-FDVIDTGIGMTQQQVEQLFLPFQQA 460

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++     G GLGL I+Q +    GG+  ++S+  +G      +P
Sbjct: 461 DSSVSRKFGGSGLGLAISQRLAVMLGGEITVQSQQGQGSVFTLSIP 506


>gi|237710952|ref|ZP_04541433.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454796|gb|EEO60517.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 634

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 374 LIAIYYIIRINHLKHHLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 433

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +     +Y   I ++   LL+LIN+ILD+SR+E+G+ +       ++++
Sbjct: 434 ---SVLVSDDSSPAEKAQYCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEECDVVEL 490

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +   +   ++ +     +   +   +  D + ++QV++NLLSNA KFT   G + +
Sbjct: 491 CQTALSTAE-YGRKTSALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 548

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 549 AIAIDKQHQQLELSVSDTGCGIPSDKSDRVFERFEKL----NEYSQGTGLGLAISRLIVE 604

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 605 NLGGKIWVDKDYTEGARFVFTHPLTK 630


>gi|159901418|ref|YP_001547665.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894457|gb|ABX07537.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 557

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 18/370 (4%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
            LV  G        +         L   A+   +               ++         
Sbjct: 174 ALVSVGQTFESARLVIYGEIAFTVLLSGAIGLMLATRTARRIRNLTDATVAVAGGDLERT 233

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
           + +     L T  S F  +   L + +  +L  +  +      ++   +     RK+AEE
Sbjct: 234 VQVRGGDELQTLASNFNSMVRSL-REHRDMLELRNAELAESLYVQQQLTEDIIRRKQAEE 292

Query: 245 -----------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                       + AKS F+A+MSHELRTPLNAILG+++++ L        +   + +  
Sbjct: 293 IALRAQAAAEAASQAKSMFVATMSHELRTPLNAILGYTQLLHLGAKARGQEDVLPQ-LER 351

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  +G+HLL L++ +LD S+IE G+  L    + L  +V E + ++Q  A+ +  ++  +
Sbjct: 352 IRLAGKHLLTLVSNVLDFSKIEHGKMNLDLGDVQLASLVDEVMGIVQPLAEARFDQLTTE 411

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGP 410
              +   +++D   +RQ++ NLLSNA+KFT   G V + V             ++ D G 
Sbjct: 412 FASTSL-IYSDGGKIRQILFNLLSNAIKFTEA-GTVTLRVWDEQRAGEPWLIFAVSDTGI 469

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+A  ++  +   F Q   +      G GLGL ++Q + A  GG   + S    G     
Sbjct: 470 GMAPDQLRRLFKPFVQADESTTRTYGGTGLGLALSQQLAAMLGGSISVESCPNVGSTFTL 529

Query: 471 ILPNTRVLNF 480
            +P       
Sbjct: 530 QIPVQCPEQS 539


>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
 gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
          Length = 1090

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 174/371 (46%), Gaps = 5/371 (1%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
               L+   I       +L L   G+++ +++      +  I ++I    +     ++  
Sbjct: 405 AAQVLVFPVIVNNAVQGILELGTMGSFSDDHVDWLYQISESIGVAIRTAEDQATVQSLLE 464

Query: 166 SFF--PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           +       + L    + S ++     A  L  +          L +SN+++ +     + 
Sbjct: 465 TTQETSEELKLQQAELQSANLQLEKQALALKHSEEALKEQKSQLEQSNLELTNKTDVLEQ 524

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             A+LE AK        +    +  KS FLA+MSHELRTPLN++L  S+ +     G L+
Sbjct: 525 QKADLEQAKLALQAKADQLSSTSRYKSEFLANMSHELRTPLNSLLLLSQSLMKNREGNLS 584

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E+  E IG IHR G+ LL+LIN+ILDLS++EAG+  L  + + +  +V E     +  A
Sbjct: 585 -ESQLEDIGIIHRGGRSLLDLINDILDLSKVEAGKLRLEYTDVDVHQLVEEITAQFKPLA 643

Query: 344 QEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            EK++     +  P    +  D + +RQ++ NL+ NA+KFTA  G V +T+   +     
Sbjct: 644 DEKDLAFNVDVAMPETFRLHTDRQRLRQILNNLIGNAIKFTAE-GSVTLTIAENTDGQLA 702

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            +++D G GI + +  +V  +F Q          G GLGL I++ + +  GG   + S+ 
Sbjct: 703 FTVEDTGIGIEQAQHDSVFEAFAQVDGTTSRQHGGTGLGLTISRDLASLLGGSIHLTSEA 762

Query: 463 REGVEVIAILP 473
            EG     +LP
Sbjct: 763 DEGSRFSLVLP 773


>gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 896

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 5/242 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+ F++S+SHELRTPL +ILGFS  +  E+ G L+  T  E+   IH     L +LI 
Sbjct: 656 RLKNDFISSVSHELRTPLFSILGFSSTLLKES-GSLDPATRLEFTSIIHDESVRLSSLIE 714

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           +IL +SRI++G+ + S      +  V   + +L+ +A+EK IE+ ++       V  D+ 
Sbjct: 715 DILTISRIDSGKAKYSRQIFDPVKPVSAVVAILRRQAEEKGIELVEEKPDREHRVVFDQD 774

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++QV++NLL NA+KFT  GGRV V++   +     I++ D G GIA  +   +   F +
Sbjct: 775 SLKQVMMNLLGNALKFTPKGGRVKVSIS-GAEEMVSITVDDTGIGIAASDHEKIFDRFYR 833

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              +     +G GLGL I + I+   GG   ++S+L  G +   +L   R  +   ED  
Sbjct: 834 SVPS-AFQIEGTGLGLAIVKDIVEMQGGSIGVQSELDRGSQFTVLL--KRAEDAADEDVV 890

Query: 487 ES 488
           +S
Sbjct: 891 QS 892


>gi|291518146|emb|CBK73367.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain [Butyrivibrio fibrisolvens 16/4]
          Length = 481

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 139/257 (54%), Gaps = 14/257 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
            DDL+ +   AK       ++A+    AKS FLA+MSHE+RTP+N I+G  E+I  ET  
Sbjct: 86  NDDLLEKTLQAKK----AERQAQTATEAKSSFLANMSHEIRTPINTIMGMDEMILRET-- 139

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             + +  +EY  DI  + Q+LL+LIN+ILD+++IE+G+  L       + ++ + +  + 
Sbjct: 140 --SEKVVEEYALDIKAASQNLLSLINDILDITKIESGKMGLVNGEYQFMSLMHDVLNNVM 197

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----W 395
           +RA+EK +E+   I  ++   ++ D+  +RQV+ N+L+NAVK+T   G + ++      +
Sbjct: 198 IRAKEKGLEVRLNIASNIPCDMFGDDVRIRQVLTNILTNAVKYTQE-GYIDISATCKRNY 256

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +      +++D G GI + +I  +  SF +         +G GLG+ I Q+++   G  
Sbjct: 257 DNTADLTFAVRDTGIGIKQEDIKRMFESFERLEENRNRNIEGAGLGMAITQNLLKMMGSN 316

Query: 456 FLIRSKLREGVEVIAIL 472
             + S   +G      +
Sbjct: 317 LEVHSVYGKGSTFSFTI 333


>gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2]
 gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 570

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 323 ITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 378

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  KE++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 379 EERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 438

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +++I          ++ D   + QVI+N  +NA+KFT   G + +      +    Y 
Sbjct: 439 SPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPK-GSIEMGYRIEEAKDEIYF 497

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG   + SK  
Sbjct: 498 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGVESKEG 553

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P +  + 
Sbjct: 554 EGSRFWFRIPRSEKIE 569


>gi|152992982|ref|YP_001358703.1| hypothetical protein SUN_1395 [Sulfurovum sp. NBC37-1]
 gi|151424843|dbj|BAF72346.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 645

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS F +S+ H++RTP+NA+LGF ++++ E      +    EY+   H+S + ++ LIN++
Sbjct: 166 KSEFFSSVIHDIRTPMNAVLGFLDLLKEEV-----DPKQVEYVQSAHKSAEMVIALINDV 220

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD ++I +G+ ++     S +  +    ++    A  K I+    +DP++   + +    
Sbjct: 221 LDFNKISSGKLKIDLYYFSPVKELENTALLFYHNALSKRIDFIIYVDPNIPYLIKSGPIR 280

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           ++Q+I NL+SNA+KFT  GG V +  +         +++KD G GI E    ++   F Q
Sbjct: 281 LKQIINNLISNAIKFTPEGGMVTLEMLYELDTDELIVNVKDTGIGIPEEAQKSIFHPFQQ 340

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            S +I     G GLGL I++ +     G+    SK  EG      +P
Sbjct: 341 ASKSIAGKYGGTGLGLSISKKLADLLEGELHFDSKEGEGTTFTLTIP 387


>gi|163849409|ref|YP_001637453.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163670698|gb|ABY37064.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 524

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 139/328 (42%), Gaps = 14/328 (4%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + L  Q ++   +L + + G+ A  LS              + +    +    I E   
Sbjct: 205 TLTLLQQILIGGGLLALIINGLGAMYLSKRALRPIEQITMTAQSIVRAEDLGRRIPEPAQ 264

Query: 231 AKSLS------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              L       +E   R E   + + RF+A +SHELRTPL A+ G  E+++  T    + 
Sbjct: 265 RDELQLLTVTINELLSRLERLFVTQQRFVADVSHELRTPLTAMQGNLEILDRGTCP--DP 322

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE IGD+ R    L+ ++N++L L++ E     L    + L  ++ E    L+  A 
Sbjct: 323 ALLKEVIGDMRRETARLIRMVNDLLLLAQSET-HVVLRHEPVELDTLLLEVFRELRPLAG 381

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + I          V+ D   ++Q +LNL  NA+++T  GG V +++     +   +S
Sbjct: 382 QVRLRI---GAEDQILVYGDRDRIKQALLNLGVNALQYTPPGGLVILSLERYE-QFACLS 437

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+E     +   F +   +      G GLGL I + +   HGG   + S++  
Sbjct: 438 VADTGVGISEEARAHIFERFYRVDRSRSRHSGGAGLGLSIVKWVAEAHGGYVTVASEVGR 497

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYK 492
           G      LP     N +P    E+   K
Sbjct: 498 GSTFAIYLPL-PEANPVPVTEVEAGNTK 524


>gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1368

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 26/301 (8%)

Query: 194  ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
               L   T     LF   +     +A+   L  E   A  +         E + AK+R  
Sbjct: 804  LGYLLLLTVAGRALFHFYLNREKLKAQ---LAYETREATRIK--------ELDTAKTRLY 852

Query: 254  ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
             +++HE RTPL  ILG ++    +    L  +        I R+GQ LL L+NE+LDLSR
Sbjct: 853  TNITHEFRTPLTVILGMAQQTLEKPSENLAFKQ-----EMILRNGQQLLQLVNEMLDLSR 907

Query: 314  IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
            +E+G+  L      +I  +R  +      A+ +  ++             D + +RQ++ 
Sbjct: 908  LESGKMALRFIQGDVIAFLRYMVESFHSLAESQQKQLHFLSTLQELDCVYDPEKLRQIVS 967

Query: 374  NLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            NLLSNA+KFT   G +++++  +         I++KD G GI E ++P +   F Q   +
Sbjct: 968  NLLSNALKFTPESGNIYLSIDRSFQNEKPFLQITVKDTGIGIPEQQLPHIFDRFYQVDDS 1027

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL---REGVEVIAILP----NTRVLNFIPE 483
                 +G G+GL + + ++    G+  ++S +    +G E   +LP       +   +P+
Sbjct: 1028 PTRQGEGAGIGLALTKELVNLLQGEIRVKSPVTGSNKGAEFTVLLPLQLAAETIAEGLPD 1087

Query: 484  D 484
             
Sbjct: 1088 A 1088


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 9/236 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R   EE   AK +F  ++SHELRTPL  I    E I      P  +   +  +  + R+ 
Sbjct: 381 RHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYI---IHDPNLSPQQRNMLQIVQRNV 437

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +I+ G+  L  S  +L + +R+ + +    A++K+I +   +  +L
Sbjct: 438 AVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSAL 497

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   + ++  NLLSNA+K+T  GG +       + +   I + DNG GIA+ ++P
Sbjct: 498 P-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADK-VKIMVSDNGCGIAQNDLP 555

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            V   F Q   A      G G+GL + ++    H G+  + SK  EG      +P 
Sbjct: 556 YVFDRFYQAGNAGH----GTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVWMPL 607


>gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
 gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
          Length = 1194

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+  +S   ++  +A +   A++ FLA +SHELRTP+ A+LG  E++        + 
Sbjct: 645 ITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNES- 703

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  + +   S + L   +N+ILD S+IEA + +L  +   L D +   +   +  A 
Sbjct: 704 ---QLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATAD 760

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + ++      P     V  D   + Q+I NLLSNA+KFT   G + + V   S +    
Sbjct: 761 LQGLDFIVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEK-GSIRICVEQ-SEQHFTF 818

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ E +I ++   F Q   +I     G GLG+ I  +++   GG   + S++ 
Sbjct: 819 EVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEID 878

Query: 464 EGVEVIAILPN 474
           +G  V   LP 
Sbjct: 879 QGTTVRVSLPV 889


>gi|254525934|ref|ZP_05137986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
 gi|221537358|gb|EEE39811.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
          Length = 688

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L++E   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSDEEQIEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++  +  
Sbjct: 469 LVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNATEKNVTLAHDIEETIPLILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPSIKNDGAPQCELVSPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEIADTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|220908645|ref|YP_002483956.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865256|gb|ACL45595.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 796

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 151/328 (46%), Gaps = 27/328 (8%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + + +    DI LA        +F  +   L        S   ++    AE E     +
Sbjct: 333 VRVVETGEPHDIELAYNSEGISGWFRNMAVKLEDGVAIFFSDITDRKQAEAERERLLKEA 392

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              R  AE  N  K  FLA +SHELR+PLN ILG++++++ +     +     E +  I 
Sbjct: 393 QAARAEAEAANRIKDEFLAVLSHELRSPLNPILGWTQLMQSQRF---DAAKTTEALAAIE 449

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+ +    LI+++LD+++I  G+  L+   ++L+ +++  I ++   A  K+I++  ++ 
Sbjct: 450 RNAKLQTQLIDDLLDVAKILRGKMSLNRVPVNLMFVIKAAIDIVMTAAVAKSIQLHSELA 509

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---------------- 399
             + +V+ D   ++QVI NLLSNA+KFT  GGRV + +     +                
Sbjct: 510 -QIGAVYGDAGRLQQVIWNLLSNAIKFTPAGGRVEIRLKRVEQQLYQPQPNSLPSIHPLP 568

Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                +I++ D G GI    +P +  SF Q   +I     G+GLGL I + ++  HGG  
Sbjct: 569 TTPYAHITVSDTGKGINPNFLPYIFESFHQEDASITRKYGGLGLGLAIVRYLVEAHGGTV 628

Query: 457 LIRSK-LREGVEVIAILPNTRVLNFIPE 483
              S    +G      LP    L+  P+
Sbjct: 629 TAESPGEGQGATFTVCLPL---LDAEPD 653


>gi|186473906|ref|YP_001861248.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
 gi|184196238|gb|ACC74202.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
          Length = 609

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 167/449 (37%), Gaps = 17/449 (3%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
               P +   D +++  L+ +             +LVA I      +P       I    
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFTHWFSIAVLVA-IYWNNIPHPHLFAACFIFYGF 59

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
                           +      W          +     L       +   +   ++  
Sbjct: 60  ANCASLALWMCNRRWPEAVSPRTWINLHAARGALLYAAPGLAIWFAFQSPHTDLPILHTV 119

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             + +A  +   + F +   V    F ++ A+      +       LA +LA        
Sbjct: 120 MLVTLAAGVFMSNGFDVANFVTAIPFLLLPAIVLHFG-THTFDRTILAIVLAFFFCAINV 178

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
                 K   +++  + ++  L              +  AEE +LAK+RF A+ SH+LR 
Sbjct: 179 YALSYRKLFQRVVQARVDQQALAES-------LAAQKLVAEEASLAKTRFFAAASHDLRQ 231

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL+AI   +  +   +  P+    + +   +I  + + L  L N++LDL+R+E+G  ++ 
Sbjct: 232 PLHAIGLLAASLNDSSATPV---QHAKTASNIANNVEALNQLFNQVLDLARLESGVTQVI 288

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
                L ++          +A  K + +     P+ + +  D   + +++ NLLSNAV++
Sbjct: 289 RLHFRLSELFDRVGSQYWPQAAAKGLALRI--APTDAVIHDDPVLLERILSNLLSNAVRY 346

Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T   G + +         G YI ++D+G GI + E   +   F Q +   + A QG GLG
Sbjct: 347 TEA-GAIWMGYRRAGQREGGYIEVRDSGIGIPKAEQERIFEEFYQVANPRRDARQGHGLG 405

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           LP  + ++   GG+  +RS    G     
Sbjct: 406 LPTVKRLVEMLGGKLQLRSTPGRGSVFRF 434


>gi|228920690|ref|ZP_04084033.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838991|gb|EEM84289.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 346

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 149/347 (42%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGML 193
               +   + L I  SI+      +     ++  P V   +S        +   +L G+L
Sbjct: 5   FGAVLALFSFLTIIWSIAFYVATSILNVFDVNVSPFVTFLISDMVGFVFIIFIWTLIGIL 64

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 65  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 120

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 121 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 177

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 178 NLLKLTLLESDEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIADQE 235

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   F +
Sbjct: 236 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVLIRDSGIGISEEQKQHIFERFYK 294

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 295 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 341


>gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
 gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D106004]
 gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D182038]
 gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
          Length = 926

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 430 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 485

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 486 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 545

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 546 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 603

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 604 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 663

Query: 469 IAILPN 474
              +P 
Sbjct: 664 AIRIPL 669


>gi|67925453|ref|ZP_00518795.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67852696|gb|EAM48113.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 679

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L     KE++   +     L  
Sbjct: 414 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTETERKEFLETANHETDRLTR 472

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ +       I L  ++ + +   QL A++K + + ++++P+L  +  
Sbjct: 473 LVNDVLDLSRLESSK-TYHLKGIDLSQLIEQTLRSYQLNAKDKELVLKKEVEPNLPLILG 531

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
               + QV+ NL+ N++KFT   G + +           + +     + I D+G GIA  
Sbjct: 532 HYDLLLQVMTNLVGNSLKFTPSKGMIVIRAYHFKTKSKQFNNKSCVRVEISDSGIGIAPE 591

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++I+  H  +  + S++  G      L
Sbjct: 592 DQAAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIIDKHHSRINLISEVGIGTTFWFDL 647


>gi|312864534|ref|ZP_07724765.1| PAS domain S-box protein [Streptococcus downei F0415]
 gi|311099661|gb|EFQ57874.1| PAS domain S-box protein [Streptococcus downei F0415]
          Length = 453

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E +     G LN E    +I         ++ +I+++L L
Sbjct: 212 FVSTVSHELRTPLTSVKSYLEALNE---GALNEEVAPSFIQVSLDETNRMMRMISDLLQL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           SRI+     +     +    +   +         +  +K+ EI +    +   V  D   
Sbjct: 269 SRIDNDTSHIEVEMTNFTAFITVILNRFDQIKSQQDSDKDYEIVRNYPLNPIWVEIDTDK 328

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           M QV+ N+L+NA+K++  GG++ V++  T  +   ISI D G GI + ++P +   F + 
Sbjct: 329 MTQVLDNILNNAIKYSPDGGQITVSMTTTETQ-LIISISDQGLGIPKKDLPLIFDRFYRV 387

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 DKARSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGKGSTFTIVLP 433


>gi|300118890|ref|ZP_07056603.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298723735|gb|EFI64464.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 484

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + I DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG     S+
Sbjct: 406 IVKIMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTNIFFSL 476


>gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
 gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
          Length = 568

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                ++++RAE    +   FLA ++HELRTPLN +LG  E++    +        +E  
Sbjct: 183 NLRLVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADTDLKG----AQQELH 238

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            ++ +SGQ L ++IN++LD S+I+AG  EL ES     ++      + + +A EK I   
Sbjct: 239 SNLSQSGQLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFT 298

Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              D  S  +   D + + Q+ +NL+ NA+KFT   G V VT+  +   G   S+ D G 
Sbjct: 299 ICADGFSNKNFKGDLERITQIFVNLIGNAIKFTDE-GSVKVTLT-SQEGGIGFSVTDTGI 356

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI++     +   F Q   +     +G GLGL I + ++   GG   + S+L +G     
Sbjct: 357 GISQTAQKKLFQPFIQADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYG 416

Query: 471 ILPNT 475
            LP  
Sbjct: 417 FLPLQ 421


>gi|212694778|ref|ZP_03302906.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855]
 gi|212662632|gb|EEB23206.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855]
          Length = 669

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 409 LIAIYYIIRINHLKHHLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 468

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +     +Y   I ++   LL+LIN+ILD+SR+E+G+ +       ++++
Sbjct: 469 ---SVLVSDDSSPAEKAQYCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEECDVVEL 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +   +   ++ +     +   +   +  D + ++QV++NLLSNA KFT   G + +
Sbjct: 526 CQTALSTAE-YGRKTSALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 583

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 584 AIAIDKQHQQLELSVSDTGCGIPSDKSDRVFERFEKL----NEYSQGTGLGLAISRLIVE 639

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 640 NLGGKIWVDKDYTEGARFVFTHPLTK 665


>gi|332519922|ref|ZP_08396386.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044481|gb|EGI80675.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 736

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              S      ++AE  +  K+ FL++++HELRTPL A+ G + ++  E           +
Sbjct: 346 KKNSELIVAMEKAELASRTKANFLSTVTHELRTPLYAVTGLTNMLLDE----DPKPEQVQ 401

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++  +  SG +LL  IN+IL +++IEA + ++     +L   +   I  L   A + NI+
Sbjct: 402 HLKSLKFSGDYLLTFINDILQINKIEANKVDIEAEVFNLKKKMSNVISALNNSALDNNIK 461

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404
           I  + D SL  +  +D+  + Q+++NL+ N++KFT   G + V     S +         
Sbjct: 462 IHLEYDESLPLNYNSDQLKISQILINLIGNSIKFT-KDGDIWVRAKKISEKNGLYNVLFE 520

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+DNG GI++ +   +  SF QGSI I     G GLGL I + ++    G+  ++S+L +
Sbjct: 521 IEDNGIGISKEKQEHMFESFSQGSIQINRKYGGTGLGLSIVKGLIDILKGKIYLKSELGK 580

Query: 465 GVEVIAILPNTRVLNFIPEDN 485
           G      LP       + E  
Sbjct: 581 GSTFYFELPMQYTEQVVKEKE 601


>gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
 gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
          Length = 1349

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 19/296 (6%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA--------- 248
                    L  S  ++   Q E  +   ELE+     +E  +   E NL          
Sbjct: 608 VELEAQANKLQASEEELRVQQEELLESNQELEIKSQALEEKNQMILERNLEIQKKAEDLA 667

Query: 249 -----KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                KS FLA+MSHELRTPLN+IL  S ++     G L  E   EY   I  SG  LL 
Sbjct: 668 LSTKYKSEFLANMSHELRTPLNSILLLSRLLSENNEGNLL-EDQIEYAKVIQTSGNGLLT 726

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVW 362
           LI+EILDLS+IEAG+  LS   +SL +++ +   +    A +K +E+    D +  S + 
Sbjct: 727 LIDEILDLSKIEAGKMTLSYEDVSLAEMINDLQNLFGPMAVDKGLELKFDCDKTTFSKIQ 786

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQYISIKDNGPGIAEGEIPTV 420
            D   ++Q++ NL+SNA+KFTA  G V ++V            +++D G GI + +   V
Sbjct: 787 TDNLRLQQILRNLISNALKFTAK-GSVTLSVYPNKEKEGYLNFAVRDTGIGIPKEKHQLV 845

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +F Q   + +    G GLGL I++ +    GG   I S++ +G E I  +P  +
Sbjct: 846 FEAFQQADGSTRRKFGGTGLGLSISKELAKLLGGSLYINSEVTKGSEFIVSIPVAK 901


>gi|301056179|ref|YP_003794390.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300378348|gb|ADK07252.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 484

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       + L   ++E I  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             ++ IE+  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVS-SDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  H G     S+
Sbjct: 406 IVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHDGNIWAESE 465

Query: 462 LREGVEVIAIL 472
           L +G  +   L
Sbjct: 466 LGKGTSIFFSL 476


>gi|253577430|ref|ZP_04854746.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843230|gb|EES71262.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 538

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 8/258 (3%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           Q+E D L A         +E+ +   E      RF+A  SHELRTPL +I GF EV+   
Sbjct: 287 QSEIDRLGASFNGMLERLEESFEAEREAKEQMRRFVADASHELRTPLTSIHGFLEVLLRG 346

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  E     +  +    Q +  L+ ++L L++++     +  + + L  ++ E   
Sbjct: 347 A--ANRPEQLHTALNSMLGEAQRMKKLVEDLLTLAKLDR-TPVVQRTQVRLDKVIAEMEP 403

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-AIGGRVHVTVGWT 396
            L++ A E+ +    +      +   D   ++QV+LNL  NAV+ T    G + V +   
Sbjct: 404 HLRMLAGEREVLFDLQPG---LTAMCDRDKIKQVVLNLFHNAVQHTDPQQGTIAVRLSAH 460

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
             +   + ++DNGPGIA   +P V   F +   +    + G GLGL I+Q+I+  HGG  
Sbjct: 461 PRQ-AELDVRDNGPGIAPEHLPHVFERFYRIDASRTRKQGGAGLGLSISQAIVEAHGGTI 519

Query: 457 LIRSKLREGVEVIAILPN 474
            + S+  +G      LP 
Sbjct: 520 EVHSEPGQGATFRVTLPA 537


>gi|253583668|ref|ZP_04860866.1| sensor histidine kinase [Fusobacterium varium ATCC 27725]
 gi|251834240|gb|EES62803.1| sensor histidine kinase [Fusobacterium varium ATCC 27725]
          Length = 638

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 129/273 (47%), Gaps = 10/273 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I     K+       +    +L + +E        +++ AE  N AK+ FLA +SHE+RT
Sbjct: 119 IKREKEKAETLSEELRLLNKNLESIVETRTKELIISKEIAESANKAKNEFLAKISHEMRT 178

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  I+G+S ++  E      +   KE +  IH SG  LLN  NE+LD S+IEAG+ +L+
Sbjct: 179 PLTPIIGYSRLLLKE----FPDSPLKEKLDIIHTSGVKLLNFTNELLDFSKIEAGKIDLN 234

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
             + ++ ++ ++        A  KNI+           +++D+  + ++  NL+ NA+K+
Sbjct: 235 CESFNVKELFQDIYYEHSTLASSKNIKFKIDFFLDEIMIYSDKMKIYEIAKNLIHNAIKY 294

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G V   V          ++ D+G GI++  +  +  SFGQ    I     G GLGL
Sbjct: 295 TEK-GFVLCEVNI-KDSFLCFNVYDSGIGISKSNLNYIFESFGQ----INKQSSGAGLGL 348

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + ++    G   + S++  G      +P  
Sbjct: 349 SITKKLVEILNGTIEVESRILVGTTFKVKIPIE 381


>gi|255530788|ref|YP_003091160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343772|gb|ACU03098.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 526

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 154/351 (43%), Gaps = 20/351 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISL 189
                 A LLI    +      +       FF      S   I S+ +         ++ 
Sbjct: 21  FISGLVALLLIGGLCALYFPQTIARTYLAIFFLAGTIASLIFIYSIKLSLKNGISSIVTG 80

Query: 190 AGMLATALSFFTYITYHLFKSNVKIL---SCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           AG +   L       Y   + N+          + +  I ++E      ++ ++RAE   
Sbjct: 81  AGQIKNGLLKTRIDAYAKNEINILAFTFNELATKLEQNIDKVERISLSLEKEQQRAEHYE 140

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K  FL +MSHE+RTP+NAILGF+  ++      L ++   E I  I +SG HLL  +N
Sbjct: 141 KVKQYFLVNMSHEIRTPMNAILGFARHLQES----LKDKDQMESIKMIIKSGDHLLVTLN 196

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
           +ILD + IE G         +L D ++   ++++  A+ K I +   IDP++  S++ D 
Sbjct: 197 DILDFANIETGEISFVCLPFNLRDTIQSICMLMESNARLKEIGLSYTIDPNIPDSIYGDS 256

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421
             + Q++L+L SNA+KFT  GG V ++    +           +KD G GI   +   + 
Sbjct: 257 VRLTQILLSLTSNAIKFTETGG-VSISAKAVTDHDDHVVVEFRVKDTGIGIPLDKQEKIF 315

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F QG+  +K    G G+GL I + ++A   G   + S   EG E    L
Sbjct: 316 NPFEQGTNHMKRKFGGTGIGLSIVKHLIALQDGVIQLNSLPDEGSEFYFRL 366


>gi|227810119|ref|ZP_03989032.1| two-component system sensor histidine kinase [Acidaminococcus sp.
           D21]
 gi|226904699|gb|EEH90617.1| two-component system sensor histidine kinase [Acidaminococcus sp.
           D21]
          Length = 545

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 153/340 (45%), Gaps = 6/340 (1%)

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
               ++  +     N +L      +    + AL    I+   +    +  ++    S   
Sbjct: 186 ITGAILLAAPIDGLNRVLRDIYIYTIIVGIAALVISVIIVSGLTRRLVRPLVDMKNSAKA 245

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
             +     S   ++  + E  DL   L       ++   +  +    +  F+A++SHELR
Sbjct: 246 IASGDY--SLKVVVDGEDEVADLGRSLNSLGRDLEQFVLKTNKMEKLRRDFVANVSHELR 303

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            P+  I G+++ I   T+   + +  K+Y   I    Q L  LINE+L++SR++    E 
Sbjct: 304 MPITIIQGYNQAILDGTVT--DPDDIKKYRKLIDNETQRLERLINELLEISRLQRKENE- 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               + L +I    + M+++RAQ+++I + + +D +L  V  +   + Q+++ L  NA+K
Sbjct: 361 EMEPVPLGEITENVVSMMEVRAQKRDIRLERYLDDNL-MVMGNGDRLFQLVMILGDNAMK 419

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++     +   V  +   G  +++ D+G GI + ++P +   F +   +      G GLG
Sbjct: 420 YSPDSSSIVFQVLPSRTGGAVLTVTDHGYGIPQEDLPYIWERFYKVDKSHSRHIPGTGLG 479

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           L IA+ I+  H  +  ++S++ +G   +   P  +V + +
Sbjct: 480 LAIAKEIIRIHKAKVQVQSEVGKGTTFMITFPPAKVKSKM 519


>gi|110803361|ref|YP_699509.1| sensor histidine kinase HpkA [Clostridium perfringens SM101]
 gi|110683862|gb|ABG87232.1| sensor histidine kinase [Clostridium perfringens SM101]
          Length = 471

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF V + +    +    +L   LA  +   ++    ++  + K N+K+ +     D++  
Sbjct: 165 FFLVFLVIGITVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNRIVTNDEIEK 224

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +++E     E   + K+ F++S+SHELRTPL +I G++  +  +     + ET
Sbjct: 225 LADSLNIMAEE----IENREMLKNEFISSISHELRTPLTSIKGWAITLNNDF---TDRET 277

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K     I +    L N++ E+LD S+  +G+ +L    I+L + +    + +  RA+ +
Sbjct: 278 LKMGFDIIEKEADRLSNMVEELLDFSKFVSGKIKLKYEEINLKEFIEYLRLYMNPRAERE 337

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + E+  K       +  D+  ++QV +N++ NA KFT    ++ +   +      YI+I 
Sbjct: 338 HKELILKGITEDFIIVGDKDRLKQVFINIIDNAFKFTHENEKIIIEFLYDEEG-IYINII 396

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ E+P V   F +G  +        G+GL I   I+A H G   I S+L +G 
Sbjct: 397 DTGCGISKEELPRVKEKFYKGKNSKSQN----GIGLSICDEIIALHEGNLEIYSELGKGT 452

Query: 467 EVIAILPNT 475
           +V+  LP  
Sbjct: 453 KVVIYLPKK 461


>gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 680

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 138/276 (50%), Gaps = 14/276 (5%)

Query: 221 KDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            D+LIA L V   +SD+ R  +  E+   AKS FL ++SH+LRTPLNA++GFS+++    
Sbjct: 277 HDELIATLSVTFDISDQKRVEQELEQAVRAKSDFLNAVSHDLRTPLNALMGFSQLLAETD 336

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P   E  + Y     R G+ L  LI+ +L+LSR+++G        ++L  ++ E   +
Sbjct: 337 LTP---EERQRYAEHCRRGGERLHGLIDSLLELSRLQSGGMRAHTEPLALPALIEEQCAL 393

Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            +  A+ K IE+  +I   L   +  D   + Q + NL+ NA+K+T   G V +T     
Sbjct: 394 FRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNLIDNAIKYTEA-GHVRITASAEG 452

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +   ++++D GPGI       +  +F +G+   +  +QG GLGL IA+ I    GG   
Sbjct: 453 EQ-ITLAVEDTGPGIPAENRDRIFAAFDRGN--YQGEQQGHGLGLAIAREIAQLMGGNLH 509

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
           + S+   G          R L  + E+     Q  C
Sbjct: 510 LDSEQGRGTTFTLT---AR-LQTLCEETTPHAQRPC 541


>gi|299532291|ref|ZP_07045684.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
 gi|298719699|gb|EFI60663.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
          Length = 458

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 152/435 (34%), Gaps = 22/435 (5%)

Query: 66  FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI-GLCWTLL 124
           +   P   +      A+  A +      +        +  W     +G +      W   
Sbjct: 18  YLVAPGATVLQQCVAAMTGALIGGWIWWLVDSWNGARLLHWLRQSELGAVPNLAGIWGEA 77

Query: 125 TLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           ++            + +    L  I  ++ A  N ++               + Q     
Sbjct: 78  SVRMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDAQGRIEWCNQISAKQFGFDA 137

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKI-------LSCQAEKDDLIAELEVAKSLS 235
               +   G L     F  Y     F  ++ +                L    E  K L 
Sbjct: 138 ERDVLQSIGNLVRDPQFSAYFAAQDFSHDLVMQGRESTPSRPVKLSVQLYGYGEGRKLLL 197

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
                  E+    +  F+A++SHE+RTPL  + GF E ++     PL  +  + Y+  + 
Sbjct: 198 ARDVTALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNL---PLEEDERRRYLELMA 254

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-----QEKNIEI 350
           +  + + +L+ ++L LSR+E      +   +S+  ++  C    +  +     ++    +
Sbjct: 255 QQAERMQHLVEDLLTLSRLEGSPLPSNNDWVSVAQLLNRCENEARGLSNALTRKQAKPHV 314

Query: 351 FQKIDPSLSSVWAD----EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
               D        D       +     NLL+NA+++T  GG++ V            ++K
Sbjct: 315 LNFPDEQALRQAGDLAGASAELHSAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVK 374

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+GPGI E  +  +   F +   +      G GLGL I + ++  HG +  I S+L +G 
Sbjct: 375 DSGPGIDEKHVSRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGARLSIESELGKGS 434

Query: 467 EVIAILPNTRVLNFI 481
           E     P +RV    
Sbjct: 435 EFAVTFPPSRVRPVA 449


>gi|94497919|ref|ZP_01304484.1| two-component system sensor protein [Sphingomonas sp. SKA58]
 gi|94422647|gb|EAT07683.1| two-component system sensor protein [Sphingomonas sp. SKA58]
          Length = 1034

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 160/368 (43%), Gaps = 5/368 (1%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           L+    A      +L +        + L + + A   I  +I A         +      
Sbjct: 228 LVAPACADDDVVAVLEIGFAQEPDAQALILLERAGEAIGKAIRAARYRERLQELLEETQQ 287

Query: 170 VVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
               L  Q+       +     + +L  + +        L ++NV++     +      +
Sbjct: 288 QSEELQAQSEELRSANEELEEQSRVLLDSQARLETQQAELEQTNVELEEQTQQLVQQRND 347

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           L  A++  +E  +  E+ +  KS FLA+MSHELRTPLN++L  + ++     G L  E  
Sbjct: 348 LTRAQASLEEQARELEQASRYKSEFLANMSHELRTPLNSLLIMARLLADNRAGNLTAEQV 407

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + +   I  SG  LL LIN+ILD+S+IEAG  +L    + +  +V +   +L+  A++K 
Sbjct: 408 R-HAETIETSGNDLLLLINDILDISKIEAGHVDLQTRPMRIAPMVEKLHALLEPGARQKG 466

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           I +      ++   + +D   + Q++ N LSNA+KFT   G V +TV          ++ 
Sbjct: 467 IALRIPAASAMPVEIESDPHRVEQILKNFLSNAIKFTDK-GEVTLTVEEAGDDAIAFTVH 525

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +  TV   F Q   ++     G GLGL I++ +    GG+  + S   EG 
Sbjct: 526 DTGIGIPVEQQQTVFEPFRQADGSVSRKYGGTGLGLSISRELAKLLGGEISLVSAPGEGS 585

Query: 467 EVIAILPN 474
                LP 
Sbjct: 586 SFTLTLPR 593


>gi|319952621|ref|YP_004163888.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
 gi|319421281|gb|ADV48390.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
          Length = 822

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 10/266 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   +E +K +E    ++ + ++++SH+LRTPLN I G+SE++E  ++          Y+
Sbjct: 304 RQNLEEEKKFSESLLKSREQLISTVSHDLRTPLNTITGYSELMENTSLTG----KQIGYL 359

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            ++  +  ++ NL+N++LD S++EAG+ ++      L D+++E    L+   + K IE+ 
Sbjct: 360 KNVKSAATYVDNLVNDLLDFSKLEAGKLKIENIPFLLPDLIQETAQNLEEFYKNKPIELQ 419

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIK 406
             ID  L   +  D   +RQ++ NL+SNA KFT   G + V    T          I + 
Sbjct: 420 IVIDKKLHKTLIGDPFRIRQILTNLISNAYKFT-QDGFIKVVATVTIENNAVYKTRIQVI 478

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI + +   +   F Q   + +    G GLGL I++ +     G   ++S   +G 
Sbjct: 479 DSGIGIEKEKQEHIFKEFAQADDSTEKKYGGYGLGLTISKKLTELLQGTINLKSDKDQGS 538

Query: 467 EVIAILPNTRVLNFIPEDNHESTQYK 492
                +P     + I     +   +K
Sbjct: 539 TFTFTIPLKLSESQITSSEKKEINFK 564


>gi|306825162|ref|ZP_07458504.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432598|gb|EFM35572.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 449

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+    +L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATTKLDIELINFTAFITFILNRFDKMRNQDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|237727250|ref|ZP_04557731.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434106|gb|EEO44183.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 669

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +  +      + L   LEV+       +++AEE N  K+ FLA+MSHE+RTPLNAI+GFS
Sbjct: 409 LIAIYYIIRINHLKHHLEVSGEELLVAKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFS 468

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
               +      +     +Y   I ++   LL+LIN+ILD+SR+E+G+ +       ++++
Sbjct: 469 ---SVLVSDDSSPAEKAQYCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEECDVVEL 525

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            +  +   +   ++ +     +   +   +  D + ++QV++NLLSNA KFT   G + +
Sbjct: 526 CQTALSTAE-YGRKTSALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPS-GSIKL 583

Query: 392 TVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
            +       Q  +S+ D G GI   +   V   F +         QG GLGL I++ I+ 
Sbjct: 584 AIAIDKQHQQLELSVSDTGCGIPSDKSDRVFERFEKL----NEYSQGTGLGLAISRLIVE 639

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476
           N GG+  +     EG   +   P T+
Sbjct: 640 NLGGKIWVDKDYTEGARFVFTHPLTK 665


>gi|227820411|ref|YP_002824382.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227339410|gb|ACP23629.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 1126

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 165/330 (50%), Gaps = 9/330 (2%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY-HLF 208
           ++ +++   +  A+           +   +     +   +  +LA  +S+F  + +    
Sbjct: 577 AVISITGIGIILAMIAHQTTAASPETAAVVERTVAVVFFVFAILAGVVSWFYVLAHDSRV 636

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +           IA  +   +     ++ AE  N AKSR++  +SHELRTPLNA+L
Sbjct: 637 VAEEESSRQNTLLLKEIAAHKKTDAALQNAKEAAESANRAKSRYVVGLSHELRTPLNAVL 696

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+++++E +   P +    +  I  I RS  HL  LI+ +LD+S+IEAG+ ++  + I++
Sbjct: 697 GYAQILERDETIPSS---RQGAIKVIKRSADHLSGLIDGLLDISKIEAGKLQVYSNEINI 753

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
            D + + + M + +AQ K I       P+L   V  DEK +RQ+++NLLSNA+KFT   G
Sbjct: 754 HDFLDQIVDMFRPQAQAKGIGFEHNRGPTLPQYVRTDEKRLRQILVNLLSNALKFTDQ-G 812

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            +   + +   +    +I+D+G GI++ ++P +   F +G    +    G+GLGL I + 
Sbjct: 813 LIRFDIAYR-SQVATFTIEDSGRGISDKDLPKIFDPFQRGDA--EHRMPGLGLGLTITRL 869

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +    GG+  + S+  +G      L  + V
Sbjct: 870 LTQTLGGEISVTSEKDKGTAFRVRLMLSAV 899


>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 935

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 8/264 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 434 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN----R 489

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 490 LVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRLT 549

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  IDP++   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 550 LYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCR-DGYLEFVVRDT 607

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 608 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 667

Query: 469 IAILPNTRVLNFIPEDNHESTQYK 492
              +P  +   + P   + S Q K
Sbjct: 668 GVRIPLYKA-RYAPAAINASLQGK 690


>gi|89893853|ref|YP_517340.1| hypothetical protein DSY1107 [Desulfitobacterium hafniense Y51]
 gi|219668229|ref|YP_002458664.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|89333301|dbj|BAE82896.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538489|gb|ACL20228.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 464

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              + +A+     M +  L I LA  +   L   T I   +   N +I S +   D++  
Sbjct: 162 TAKIFIAIGLFVAMVVGFLSIFLANTILIPLKEVTAIAESMAAGNFQIKSRKKRDDEIGK 221

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +++E  K+       K+ F++S+SHELRTPL +I+G++  ++ E       E 
Sbjct: 222 LADTLNYMAEEITKK----EKLKNDFISSVSHELRTPLTSIMGWAITLQSEKF--QQKEM 275

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +G I +  + L  ++ E+LD S+  +GR +LS   +++ +++      L  RA  +
Sbjct: 276 LNDGLGIIAKESERLTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATRE 335

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I+       +L  +  D   ++QV++N+L NA+ FTA  G V              +I 
Sbjct: 336 TIQFTVDYPENLPDLLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDY-TFTIS 394

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GIA GE+P V   F +G  +        G+GL I + I+    G+  I S++  G 
Sbjct: 395 DNGCGIAAGELPMVKEKFYKGKSSRSRN----GIGLSICEEIITLMKGRLEIHSEVNVGT 450

Query: 467 EVIAILPNT 475
            V+  LP  
Sbjct: 451 TVVITLPRE 459


>gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 625

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 136/309 (44%), Gaps = 18/309 (5%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITY----HLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           ++     I L    +         +              L         + E + AK+  
Sbjct: 47  LTGLPFGIPLGASPSGTEVTIATTSRTALMRQESLGEAGLPLTRIWLRDVTEFKKAKTEL 106

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               + A     AKS FLA+++HE+RTP+  ILG +E+    T+        +EY+    
Sbjct: 107 TAAHEAALAGERAKSNFLANITHEIRTPMIGILGMAEL----TLATELTSKQREYLEMAR 162

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S Q LL ++N+I+D +RIE G  EL+++   L   V E + + +  A +KN+ +  +  
Sbjct: 163 HSAQSLLTVLNDIVDYARIEVGALELAKTPFDLFATVEEAVSVFRPLAVKKNLSLEYRFL 222

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNG 409
             +   +  D   +RQ+++NL+ NAVKFT  G  V         +     G   S++D G
Sbjct: 223 GDVPQNLVGDASRLRQILINLVGNAVKFTDSGSVVLAICPEPEKQSPGKVGLCFSVRDTG 282

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   +IP +  SF Q  ++     QG GLGL I + ++   GG++ + S+  +G    
Sbjct: 283 IGIPRDKIPAIFDSFTQADVSPARRYQGAGLGLAIVRHLVEMQGGEYGVESEEGQGSIFS 342

Query: 470 AI----LPN 474
                 LP 
Sbjct: 343 CTMEFGLPA 351


>gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 786

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 9/290 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +         +       +   E     + RAE  N AKS FLA+MSHELRTP
Sbjct: 480 ERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEFLANMSHELRTP 539

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+GF+E++E E  G L +  Y +Y  DI +SG +LL++I++IL +SRIEA R +L  
Sbjct: 540 LNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVR 599

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L   +   + ++   A  K++ I  ++  +L  V ADE+ ++Q++LN++ NAVKFT
Sbjct: 600 RDIDLGTALNSALTLVSKEAASKSVSIDLELAGTL-HVLADERALQQILLNIIQNAVKFT 658

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GRV +  G +     ++ I D G GI +  I  +   F Q    +  + +G GLGL 
Sbjct: 659 PEQGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTRSYKGSGLGLA 717

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQ 490
           IA+S    HGG   IRS+   G  V+  LP     R+     E   ++ Q
Sbjct: 718 IARSTAELHGGSLRIRSEEGIGTLVLVRLPMPTPERLAEVAREAERDTLQ 767


>gi|254521023|ref|ZP_05133078.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219718614|gb|EED37139.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 1019

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 24/310 (7%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--------------- 244
                  L + +  +   Q+  ++  AELE +    +E     E                
Sbjct: 277 LRVANEELEEQSRSLQQSQSHLEEQQAELEQSNVQLEERTHELEAQKQALLVAQGQLVRN 336

Query: 245 ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                  +  KS FLA+MSHELRTPLN+ L  ++++     G L +E  K Y   I  S 
Sbjct: 337 SNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTDEQVK-YARAILSSN 395

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             LL LIN+ILDLSRIEAG  EL++  + +  +V+      +  A++K + +  + D   
Sbjct: 396 NDLLALINDILDLSRIEAGHVELADEVVVVDSVVQRLRETFEPMARQKGLALQIEADALA 455

Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              + AD + ++Q++ NLL+NA+KFT   G+V + V           + D G GIA  ++
Sbjct: 456 PSQLVADSQRLQQILKNLLANALKFT-EHGKVSLHVRAAGSGRIRFEVADTGIGIAREQL 514

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +  +F Q   + +    G GLGL I++ +    GG   + S+   G   I  LP    
Sbjct: 515 QVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIHVDSEPGRGSCFILELPLQGA 574

Query: 478 LNFIPEDNHE 487
                 +  +
Sbjct: 575 PVAASGEASD 584


>gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 778

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q       +   G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGNPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|315501120|ref|YP_004080007.1| gaf sensor hybrid histidine kinase [Micromonospora sp. L5]
 gi|315407739|gb|ADU05856.1| GAF sensor hybrid histidine kinase [Micromonospora sp. L5]
          Length = 1454

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/458 (22%), Positives = 181/458 (39%), Gaps = 29/458 (6%)

Query: 57   LLVANIGTWFTQNPIFP-MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
            L+ A +G +F  +     M   +T +               +  +G+  + R  + V   
Sbjct: 846  LVDAQLGAFFLADSSEGSMRLRLTASYGYVARGHDVTFGPGEGLVGQAALSRRTIRVKAQ 905

Query: 116  AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              G       L +        L +     LL  +  + ++ F   +  FL    + + ++
Sbjct: 906  PDGRLVVRSGLADTPPADLVVLPVQFEGELLGVIEFAGVATFSELHLAFLERLVLTIGVA 965

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               I +    +  LA     A          L ++N ++        +  A +E      
Sbjct: 966  VNTIQANRRTEELLAQSQRLAHEMQDQSAE-LQRTNAELEDKAKLLSEQKANIETQNREI 1024

Query: 236  DETR----KRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +  R    ++A++   A   KS FLA+MSHELRTP    L     +  E      +    
Sbjct: 1025 ELARLGLEEKAQQLTRASAYKSEFLANMSHELRTP-LNSLLLLARLLAENPERNLSAKQI 1083

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E+   IH +G  LL+LI++ILDLS+IEAGR ++  + I   +I          +A+EK +
Sbjct: 1084 EFARTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGL 1143

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----- 402
            +   ++   L   +  D + ++Q++ NLLSNAVKFT   G V + +G  +    +     
Sbjct: 1144 DFQVRVSQDLPPALVTDAQRLQQILRNLLSNAVKFT-DNGAVTLRIGPAAENAVFDVPAL 1202

Query: 403  --------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++ D G GI++ ++  +  +F Q          G GLGL I++ +    GG
Sbjct: 1203 TNAQRVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGG 1262

Query: 455  QFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHES 488
               + S   +G      +P       V+   P     +
Sbjct: 1263 TITVSSAPGQGSTFTLFVPDVLAPDAVVAPAPPSPSRA 1300


>gi|297583784|ref|YP_003699564.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297142241|gb|ADH98998.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 472

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 135/318 (42%), Gaps = 6/318 (1%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            +  AV  +F P         +       + +  +          I   +  S       
Sbjct: 152 TISTAVNAAFSPFESLRGILFLSMGVAFVVIVFVLHKMTNYVIDPIRRMIAASKSWGEGD 211

Query: 218 QAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            ++K D+    E        ++     +E +  K  FL ++SHELRTPL+ + G+SEV+ 
Sbjct: 212 FSQKVDVKTTDEIGQLADAFNQMTYSLDEADKKKQEFLGNVSHELRTPLSYLKGYSEVLL 271

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +       +   ++I  I   G  +  LI+++LDL+R+E   Y + +  + L  +V + 
Sbjct: 272 EKHRKGEALDE--KHIEKIQAEGNRMEKLIHDLLDLARLEGDTYPMDKMPMPLAQLVEDV 329

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
              + L A++ ++ +  ++D  +  +  DE  + QVI NL+ NA+++   G ++ V++  
Sbjct: 330 CERMNLIAEKDDVTVNLELDYGII-IEGDESRLEQVISNLIENAIRYGKQGKQIDVSLEQ 388

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +     + ++D G G+    +  +   F +          G GLGL I   I+  H GQ
Sbjct: 389 -ADGKAVLRVRDYGAGMPPETLTRLTERFYRVDRTRSKQLGGTGLGLTIVNEIVKKHDGQ 447

Query: 456 FLIRSKLREGVEVIAILP 473
               S   EG   I  +P
Sbjct: 448 LSFESVEGEGATAIVQIP 465


>gi|91772785|ref|YP_565477.1| signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
 gi|91711800|gb|ABE51727.1| pleC-like signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 383

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 2/247 (0%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E+ K    ET+   ++    KS FLASMS+ELRTPLN+I+GFS+V+  E +GPL NE 
Sbjct: 135 ESEILKRTLIETKIDLDDACHVKSDFLASMSYELRTPLNSIIGFSDVLRTEEIGPL-NEK 193

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +Y+ ++  SG+ LL LIN +L+L +IE+G+ +L    + + ++++E  ++L+ R  EK
Sbjct: 194 QLKYLKNVSTSGKELLELINGLLELLKIESGKVQLQVEDVDVSEVIQEVKVLLEPRTVEK 253

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           NI +   +   + S+ AD    + V+ +L++NA+ F +    +            Y++I 
Sbjct: 254 NISLVCNVRSDVGSIKADRAKFKDVLYDLINNAINFVSDDETIRCYATVHESD-LYVTIH 312

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
             G GI E E+  V   F           QG GL LPI + I+  HGG   I SK   G 
Sbjct: 313 YTGVGIPEEELKNVFQPFINVRNFHVQKYQGTGLRLPIVKKIVELHGGAIWIESKPENGS 372

Query: 467 EVIAILP 473
                +P
Sbjct: 373 TFTFTIP 379


>gi|47527271|ref|YP_018620.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184845|ref|YP_028097.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49477455|ref|YP_036139.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036949|ref|ZP_03104328.1| sensor histidine kinase [Bacillus cereus W]
 gi|254684570|ref|ZP_05148430.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254721328|ref|ZP_05183118.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741274|ref|ZP_05198962.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254750825|ref|ZP_05202864.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|47502419|gb|AAT31095.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178772|gb|AAT54148.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49329011|gb|AAT59657.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195990438|gb|EDX54427.1| sensor histidine kinase [Bacillus cereus W]
          Length = 453

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 231 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 288

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 289 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 346

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 347 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 405

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 406 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 453


>gi|116053129|ref|YP_793450.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588350|gb|ABJ14365.1| putative sensor histidine kinase/response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 770

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 11/359 (3%)

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
           +   L  +            ++  + L       +     L              ++   
Sbjct: 150 IAIDLAAVYRRLASGGLASLLWMGSFLCGLAVALSWLFHSLVTRHLWRMSEFAGHIAEGD 209

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           +     LD +         +    +               A++D+L  ++E   +     
Sbjct: 210 LQQPLRLDKADRERDEI-DAVAAALEDMRQALRTDRRRRDADRDELRRQVERRTASLRRA 268

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + +AE  + AKSRFLA+MSHE+RTPLN ILG +E++   ++G  +    ++ +  +  +G
Sbjct: 269 KDQAEAADRAKSRFLATMSHEIRTPLNGILGMAELLREASLGERD----RQRLRALATAG 324

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL ++NE+L  +R+E           SL  ++ + + +L+ RA+E    +   +DP +
Sbjct: 325 EGLLAILNEVLHFARLEEAADVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQV 384

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIA 413
                  E+ +RQV+ NLL NAVKFT   G V V V   +         +S+ D+G GI 
Sbjct: 385 HDGHRGAEQFLRQVLTNLLGNAVKFTEA-GEVRVRVERLARSAGSERLRLSVADDGIGIP 443

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           E     +   F QG  A+     G GLGL I++ ++   GG+  + S++ +G      +
Sbjct: 444 EEMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEI 502


>gi|56552058|ref|YP_162897.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543632|gb|AAV89786.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 421

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 169/439 (38%), Gaps = 29/439 (6%)

Query: 39  TLHVESLFRVSPILPLFVLLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
               +S  R   ++    + ++ +          + +   W +++L +         K +
Sbjct: 1   MTFPQSRLRKDCVIKFIPVYLSGLSILALFIIAVSHVSVGWPILSLMLIVILWGWWFKNI 60

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +                      G   T            + +       LL+      +
Sbjct: 61  SEASTPFPESK-----------SGNSLTDPAYPFSQATAADIIIAMDEPALLVNQGQVEV 109

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +N      + +      + ++ +   ++ +L   L  M    L+    +          +
Sbjct: 110 ANRAAENLLGMHIEGGDIRMAIRHPAAIRLLTEPLDNMTPVLLAGLGGVNRRWELYAYPL 169

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                E+  LI   + + +   E           +  F+A+ SHELRTPL  + GF E +
Sbjct: 170 ----NEEQRLILLRDQSTAHLTE---------QVRIDFVANTSHELRTPLATLSGFIETL 216

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E + +     +T   ++  + R  + + NL+++++ LSRIEAG++ L    + +  +V E
Sbjct: 217 EDDDVIKE-RDTRHHFLSIMAREAKRMQNLVDDLMSLSRIEAGKFSLPHDIVHMSPVVEE 275

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  +Q   Q K  +I  +   S  S+  D   + Q++ N++ NA+K+    G + V + 
Sbjct: 276 VVSNIQASGQAKATQITLENHLSSDSLQGDRAELTQLLYNIIGNALKYGRKDGIIKVALD 335

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T      ++I D G GI    IP +   F +   +   A  G GLGL I + I+ +H G
Sbjct: 336 NTDDHRIKLAIADEGDGIPFHHIPRLTERFYRVDNSRSRALGGTGLGLAIVKQIVEHHRG 395

Query: 455 QFLIRSKLREGVEVIAILP 473
           + LI S   +G  V   LP
Sbjct: 396 ELLIDSLPGKGTTVTVFLP 414


>gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 1091

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 10/238 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           K+A++EN AKSRFLA +SHE+RTPLN I+G +++++   +     +T ++Y   I  S  
Sbjct: 434 KQADQENRAKSRFLARVSHEIRTPLNGIIGMTQLMQHTEL----TDTQQDYAHKILSSSH 489

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            LL +I +ILDLS+IEAG+  + +    + +++ E    + +    K IE+  + +  L 
Sbjct: 490 LLLGIITDILDLSKIEAGKLNMEQLEFQIDELLYELTSTVGVLKGIKQIEVILESEAGLP 549

Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAE 414
             V  D   ++Q+++NL SNA+KFT   G V V V              +++D G G+ E
Sbjct: 550 DKVIGDPLRLKQILMNLCSNAIKFT-EHGHVLVRVERVIEMNGIVRLRFTVRDTGIGMTE 608

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +I  +   F Q   A  S   G GLGLPI + ++   GG+  + S    G      L
Sbjct: 609 DQIDMLYEPFWQAEYASASKLAGTGLGLPIVKELVQLLGGELQVESSPGIGSCFCFEL 666


>gi|229084116|ref|ZP_04216405.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
 gi|228699152|gb|EEL51848.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
          Length = 453

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 126/281 (44%), Gaps = 10/281 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            +   +  FT+ T  +   N  +   +  +D++       + ++ + R         +  
Sbjct: 171 FVVRPIQRFTHATKEIASGNYDLALPENRRDEIGTLATHFRKMAKKLRN----SEQMRQE 226

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHE ++PL++I GFS+ ++   +          Y+  I    + + +L  ++L L
Sbjct: 227 FVSNVSHEFQSPLSSIQGFSKTLQTNNLTKS---EQTHYLEIIESESRRMSSLCKQLLLL 283

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           + ++     L + +  L   +++ I ML+   + +  E+  ++D     ++ DE  + QV
Sbjct: 284 ASLDKEDLTLRKRSFDLGKQIKDIIFMLE--WEWRKKELAVEMDVPNIQIYGDENLLYQV 341

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
            +NL +N++KFT  GG +             ISI D G GI E EI  +   F +   A 
Sbjct: 342 WMNLFTNSIKFTESGGTIAFEAEELETEW-RISITDMGIGIPENEIKKIFDRFHKVDTAR 400

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGL I + I+  H G   + S+L +G      L
Sbjct: 401 NRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTTFSIYL 441


>gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1152

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 9/332 (2%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
             ++   +  SF  V          S  V  I  + +   A      ++  L        
Sbjct: 259 GAVVFTDLRTSFAAVPAGPWDDPPDSAFVTTIPASRLREPAGFMVAGLSARLKWDRHYQD 318

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE 272
             +  K  + + +  A++  +E ++RAE   E + AK+ F +++SHE RTPL  +LG  E
Sbjct: 319 FLELAKAQIASAINNARAY-EEEKQRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLGPVE 377

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            + +     L+    KE +  + R+G  LL L+N +LD SRIEAGR + +     L    
Sbjct: 378 DLLMRRSDELSAAA-KEDLAVVGRNGLRLLRLVNSLLDFSRIEAGRMQATYEPTDLARFT 436

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E   + +   +   + +    D      + D     +++LNLLSNA KFT   GR+ V+
Sbjct: 437 EELASLFRSACERAGLTLTVDCDTLPEPAFVDRAMWEKIVLNLLSNAFKFTQA-GRIAVS 495

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  T G    + + D G GI   E+P +   F +         +G G+GL +   ++  H
Sbjct: 496 L-RTIGDKAELRVADTGTGIPADELPRIFERFHRVQGTHGRTHEGAGIGLALTLELIKLH 554

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           GG     S    G   I  +P  +    +P D
Sbjct: 555 GGTIRADSTPGAGTTFIVEIPMGKA--HLPAD 584



 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 141/335 (42%), Gaps = 15/335 (4%)

Query: 150  SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            +++ +    +   +     P +  L     +        L  ++ +A +    +   +  
Sbjct: 675  ALARIHARSVELLLTDVMMPGLDGLGLLHALRTDPKTADLPIIMLSARAGEESLAEGVEA 734

Query: 210  SNVKILSCQAEKDDLIA-------ELEVAKSLSDETRKR---AEEENLAKSRFLASMSHE 259
                 L+      +L+A            +   +  R R     E +  K  FL  ++HE
Sbjct: 735  GADDYLTKPFSARELLARVGTHVKMARFRREALEALRHRGKALREADRRKDEFLNILAHE 794

Query: 260  LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            LR PL  I   + ++        + E  ++    I R  +HL+ L++++LD +RI  G+ 
Sbjct: 795  LRGPLATISNTAHILGQSR---TDTELARDAQKRIERQLRHLVRLVDDLLDTNRITQGKL 851

Query: 320  ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            +L    + L   +R+ I   +  A+E   E+   +      + AD   + QVI NLLSNA
Sbjct: 852  QLHIERVDLQAAIRDAIETCRPLAEELEREVTLDVPAESIWLDADPVRLAQVIGNLLSNA 911

Query: 380  VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
             K+T  GG V ++V    G    + +KD+G GI    +P++   F Q   ++  A  G+G
Sbjct: 912  YKYTEHGGHVWLSVEPR-GDEVLLRVKDDGVGIPAAALPSIFDLFMQVRSSLNRARGGLG 970

Query: 440  LGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILP 473
            +GL + + ++  HGGQ          G E +  LP
Sbjct: 971  IGLALVKRLVDMHGGQVEGFSDGPSRGSEFVVRLP 1005


>gi|254445827|ref|ZP_05059303.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260135|gb|EDY84443.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 567

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 22/334 (6%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                +      S+      +             +    LS  AE  D+  E+  A    
Sbjct: 94  IMPQFADDGSVASILVGGLRSTLRRDSTQDSSVSTAANSLSKLAEMRDIFQEITRANKGL 153

Query: 236 DETR-------KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           ++         + A+ E+ AKS FLA+MSHE+RTP+NA++GF +++    +    +E  +
Sbjct: 154 EQALVSARTQIEYAKAESDAKSDFLANMSHEIRTPMNAVIGFCDLLSNTKL----DEEQE 209

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  I+ SGQ L+ LI ++LD S+IE+G   L    +S   I+ E   M+ +R +E +I
Sbjct: 210 EYLEAINHSGQLLIKLIGQVLDYSKIESGHLHLESEELSFDQILLEVQAMMGVRLKETDI 269

Query: 349 EIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----Y 402
           E   + +  S   +  D   ++QV++NLL NA KFT   G + +                
Sbjct: 270 EFVVEKENLSDELLVGDTTRVKQVLINLLGNAFKFT-RDGSIVLKARSFDSHHLGHLCLQ 328

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461
           + ++D G GI    + ++   F Q  + I     G GLGL I + +     G   + S K
Sbjct: 329 VRVEDTGIGIRADRLRSLFCPFAQAHMRIAREFGGSGLGLAICKRLCEAMHGDVWVESTK 388

Query: 462 LREGVEVIA--ILPNTRVLNFIPEDNHESTQYKC 493
             +G   +    LP  +    +  D+  S + K 
Sbjct: 389 PGKGSVFVFEIHLP-KKNAEALALDSDYSVEEKG 421


>gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 749

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 141/325 (43%), Gaps = 27/325 (8%)

Query: 171 VVALSTQAIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNVKILSCQAEKDD---- 223
           V  L        H L  SL+ +   +               ++ +       ++D     
Sbjct: 298 VAMLIAPRWRRRHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACVAL 357

Query: 224 ---LIAELEVAKSL---------SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              L    E  +           + + R++A+  N  K   LA++SHELRTPLN I G+ 
Sbjct: 358 SLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWI 417

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ I
Sbjct: 418 EVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRI 473

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V +    L   AQ + +++          V  D + +RQV+ NLLSNA KFT  GGRV V
Sbjct: 474 VNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           ++  T      + + D G GI+   +P V  +F +   +  S+ +G+GLGL I + I   
Sbjct: 534 SLMRTDSHATLV-VADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAEL 592

Query: 452 HGGQFLIRSKLRE--GVEVIAILPN 474
           HGG+  + S   +  G      LP 
Sbjct: 593 HGGKVEVASA-GKRLGTTFTVTLPA 616


>gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 399

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 11/282 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +     ++       + +      ELE A   S      A++    K  F A +SHEL
Sbjct: 127 LCVLDREPRTLSAQERQRLKDLAAWVELECAVVQSTLA---AQDAERVKRDFTALVSHEL 183

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL ++ G  E++     G +        +    ++   L+ L N++LDLSR+++G+  
Sbjct: 184 RTPLTSVHGSLELLASGRFGEMQ-AQASRLVEIAVKNTDRLVRLANDVLDLSRVQSGQLR 242

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L  + + L D+V   +I ++  A+  ++ +  + DP   +V  D   + QV+ NLL+NAV
Sbjct: 243 LRPAPVELADVVENAVIAVEGTAERCHVPLVTRKDP--VTVRGDADRLVQVVTNLLANAV 300

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K +  G  V V      G    + ++D+G GI + E+  +   F Q          G GL
Sbjct: 301 KVSPPGQPVEVGCS-VEGSVARVYVRDHGMGITDDEVKRIFEPFVQLGA----KSGGAGL 355

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           GL I + I+ +HGG   + S+   G     ILP    L   P
Sbjct: 356 GLAITRGIVESHGGTIAVESEAGIGSTFTVILPVGGPLVDRP 397


>gi|229097706|ref|ZP_04228661.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
 gi|228685651|gb|EEL39574.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
          Length = 448

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLS 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I
Sbjct: 266 HYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG V   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELES-SVIISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+ +  +  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEKEGMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 RVELPK 448


>gi|163644182|dbj|BAF95741.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 777

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 147/373 (39%), Gaps = 44/373 (11%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           I +++  ++   + AL        +  +   V + L   +       ++  A      L 
Sbjct: 248 IIQTSEAIVIPPVCALGKASNHRVLAGAMAAVRLPLLYVSNFKGGTPEVVSASYAILVLV 307

Query: 199 FFTYITYHLFKSNVKILSCQAEKDD--------LIAELEVAKSLSDE------TRKRAEE 244
                        ++++   A++          L        +L D+       R+ AE 
Sbjct: 308 LPGETGRVWTAHEIEMVEVVADQVAVALSHAAVLEDSQRTRDALVDQNKKLQAARQEAET 367

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              A++ FLA M+HE+RTP++AI+  S +++   +        +  +  + +S   L  L
Sbjct: 368 AIRARNDFLAVMNHEMRTPMHAIIALSSLLQEGKLTV----DQRSMVDTVVKSSSLLSTL 423

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           IN++LD SR+E G   L      L  ++RE   + +  A+ K ++ F  I+  +   V  
Sbjct: 424 INDVLDFSRLEDGSLSLEMRPFELPTVLRETENLAKPMAKGKGLDFFFDINMDVPQCVIG 483

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------------------GRGQYIS 404
           DEK + Q+ LN++ NAVKFT   G V V+V                           YI 
Sbjct: 484 DEKRLLQITLNIIGNAVKFT-RLGFVSVSVSLEKYDASIRRDPRNPSWRPIPCDGFVYIR 542

Query: 405 --IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK- 461
             +KD G G+ E +IP +   F Q          G GLGL I +  +    G   I S+ 
Sbjct: 543 IVVKDTGLGVRENDIPRLFNKFVQADSTTTRQYGGTGLGLAICKKFVQLMNGHIWIESEG 602

Query: 462 LREGV--EVIAIL 472
           +  G     I  L
Sbjct: 603 INRGSVVTFIVRL 615


>gi|70725019|ref|YP_251933.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
 gi|123762363|sp|Q4LAJ8|WALK_STAHJ RecName: Full=Sensor protein kinase walK
 gi|68445743|dbj|BAE03327.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
          Length = 608

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       N      ++       + ++
Sbjct: 369 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGVWKDDNLAP--SFLSVTREETERMI 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 427 RLVNDLLQLSKMDNESEQITKEIVDFNMFINKIINRHEMAAKDT--TFVREIPSETIFTE 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 485 IDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 544

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +  
Sbjct: 545 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIDDGD 604

Query: 482 PEDN 485
            ++ 
Sbjct: 605 WDEE 608


>gi|332880752|ref|ZP_08448424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681260|gb|EGJ54185.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 937

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 135/301 (44%), Gaps = 19/301 (6%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            +  + +H    +    +A  +     + Y + +  V       EK+ ++ E   A    
Sbjct: 357 ARLSIVVHPPFWATYYAMAVYVLMVVGMVYWISRMYVHR-----EKEKMMEE-RRAN--- 407

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              R++ E     K RF  ++SHE RTPL  IL     +  +     ++   K+ +  I+
Sbjct: 408 --ARRQQEHLEEMKLRFFTNISHEFRTPLTLILTPLGSLIKQ----QSDVDLKQRLVVIY 461

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+ + LL L+N++LD  ++E     LS S   ++  VR+ +       +EK + +  +  
Sbjct: 462 RNAEKLLQLVNQLLDFRKLEMQGERLSVSMGDIVVFVRDAVEAFCELVKEKGVTLAFESK 521

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGI 412
                +  D   + +V+ NLLSNAVKFT  GGR+ V V            +S++D G G+
Sbjct: 522 IGHLYMNYDHDKVYKVVNNLLSNAVKFTPSGGRIAVRVENSVRNGREYVAVSVRDTGCGM 581

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E +   + T F Q   + KS   G G+GL + +  +  HGG+  + S+  EG      L
Sbjct: 582 EEKDKERIFTRFYQVESSHKSQS-GSGIGLHLVKGYVDLHGGEITVDSRPGEGSVFTFFL 640

Query: 473 P 473
           P
Sbjct: 641 P 641


>gi|222527409|ref|YP_002571880.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|222451288|gb|ACM55554.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 488

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 139/328 (42%), Gaps = 14/328 (4%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + L  Q ++   +L + + G+ A  LS              + +    +    I E   
Sbjct: 169 TLTLLQQILIGGGLLALIINGLGAMYLSKRALRPIEQITMTAQSIVRAEDLGRRIPEPAQ 228

Query: 231 AKSLS------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              L       +E   R E   + + RF+A +SHELRTPL A+ G  E+++  T    + 
Sbjct: 229 RDELQLLTVTINELLSRLERLFVTQQRFVADVSHELRTPLTAMQGNLEILDRGTCP--DP 286

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE IGD+ R    L+ ++N++L L++ E     L    + L  ++ E    L+  A 
Sbjct: 287 ALLKEVIGDMRRETARLIRMVNDLLLLAQSET-HVVLRHEPVELDTLLLEVFRELRPLAG 345

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           +  + I          V+ D   ++Q +LNL  NA+++T  GG V +++     +   +S
Sbjct: 346 QVRLRI---GAEDQILVYGDRDRIKQALLNLGVNALQYTPPGGLVILSLERYE-QFACLS 401

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI+E     +   F +   +      G GLGL I + +   HGG   + S++  
Sbjct: 402 VADTGVGISEEARAHIFERFYRVDRSRSRHSGGAGLGLSIVKWVAEAHGGYVTVASEVGR 461

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYK 492
           G      LP     N +P    E+   K
Sbjct: 462 GSTFAIYLPL-PEANPVPVTEVEAGNTK 488


>gi|83950383|ref|ZP_00959116.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838282|gb|EAP77578.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 540

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 3/260 (1%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +    +  + +   +   ++  +  +R E     +  F++ M+HELRTPL +I G  ++
Sbjct: 267 AMEANVQIIETVDGQKRFVAVLRDISQRME-AEATRRNFMSMMTHELRTPLTSIKGAVQL 325

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +   T GPL        +     +G+ LL L+N+ILDLS++EAG+ E +   + L  ++ 
Sbjct: 326 LTAGTAGPL-EPGVMSLLRIAENNGERLLGLVNDILDLSKLEAGKMEFTMGRMDLRALID 384

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           E I      A    + +  K   +   V  D+  + QV+ NL+SNA KF+  G +V ++ 
Sbjct: 385 EAIESDAGYATGLGVTLRCKSPETPLWVTGDKGRLLQVLTNLMSNAAKFSETGSQVEISA 444

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              +G    ++I D GPGI E     +   F Q     K   +G GLGL I ++I+ +H 
Sbjct: 445 RP-NGDMIRVAISDRGPGIPEAARAGLFEPFKQAGAQDKGRIKGTGLGLTIVKAIVEHHD 503

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G+    S+L +G      LP
Sbjct: 504 GRVDFVSELGKGTTFYFDLP 523


>gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 778

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEKVDDAFDED 519


>gi|302185632|ref|ZP_07262305.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1165

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 650 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRAEHGELD 709

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 710 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 765

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++E+  ++D  + + V  D    +Q++ NL+SNA+KFT +G  +V +    +     
Sbjct: 766 RQKDLELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLQAAESPDPQL 825

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 826 LHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 885

Query: 459 RSKLREGVEVIAIL 472
            S    G  +   L
Sbjct: 886 DSTPGHGTRISMNL 899


>gi|300024973|ref|YP_003757584.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526794|gb|ADJ25263.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 651

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I      +    + R +AE  + AKSRFLA+MSHE+RTP+N ILG   ++    +   
Sbjct: 216 RDITVERGVERELKDARNQAEMASRAKSRFLATMSHEIRTPMNGILGMISLMRDTQL--- 272

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   +     +  S + LLNL+++ILD S+IEAG+ EL     SL   V + + +L   
Sbjct: 273 -DAEQRTCARIVEDSTRALLNLVDDILDFSKIEAGKLELGSRPFSLKMCVAQAMQLLAPS 331

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR- 399
           A  K +     +   +   V  DE  +RQ++LNLLSNA+KFT  GG  V V++   +G+ 
Sbjct: 332 AAAKRLSFTSTLTNDVPEWVIGDEMRVRQIVLNLLSNAIKFTETGGIGVCVSLAPENGKS 391

Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                  I + D G G+    I  +   F Q SI +     G GLGL I++ +    GG 
Sbjct: 392 GGDCEIAIKVTDTGVGLPAEFISHMFQEFEQSSITMARHPGGTGLGLAISKRLAQAMGGD 451

Query: 456 FLIRSKLREGVEVIAIL 472
            L  S    G    A+L
Sbjct: 452 ILAESGADRGASFTAVL 468


>gi|172041314|ref|YP_001801028.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
 gi|171852618|emb|CAQ05594.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
          Length = 529

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 138/337 (40%), Gaps = 14/337 (4%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +   +    +        + + +Q ++   +  ++     A+ +S              
Sbjct: 201 TIRRLVYRQIIIGFLVVASIMIVSQYLVRRALRPLNQVEETASLISQGHLDQRVPNWEPD 260

Query: 213 KIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
             +       + ++A+++ A      + ++A +      RF+   SHELRTPL ++ G++
Sbjct: 261 TEVGRLAQAFNRMLAQIQGAFLAVGASERQARKSEATMRRFIGDASHELRTPLTSVRGYA 320

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E+         +       IG I    + +  L+ ++L L R++ GR  L    + ++++
Sbjct: 321 ELYRSGATDDADM-----VIGRISDEAERMGLLVEDLLALVRMDEGR-PLQNQRVDVLEL 374

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                   +     +NI +      S+  V  D   + QVI NLL+NA+K       V +
Sbjct: 375 TLRAADGARASFPGRNIGVENHY-GSIPVVMGDANRLHQVISNLLTNALKHAGEDANVKI 433

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           ++  TS     I ++D+G GI    +P +   F +   +   A  G GLGL I QS++  
Sbjct: 434 SLLKTSPELVTIDVQDDGEGIPADALPHLFERFYRPDGSRSRASGGSGLGLSIVQSLVKA 493

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           HGG   + S + EG      LP        PED+ E 
Sbjct: 494 HGGAITVDSTVGEGTTFRVQLPVA------PEDSREQ 524


>gi|254562691|ref|YP_003069786.1| sensor protein gacS [Methylobacterium extorquens DM4]
 gi|254269969|emb|CAX25947.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens DM4]
          Length = 914

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 148/321 (46%), Gaps = 7/321 (2%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++     +A +   +   H              +        L   N +  +       L
Sbjct: 189 VTRPLAALARTMDGVRLGHDYSRRAEAGSGEVGALAESFNDLLRAVNERDRAIARYNAGL 248

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
             E+ +      E ++ A+E N AKS FLA+MSHE+RTP+N +L  +E++    +     
Sbjct: 249 EEEIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----P 304

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              + Y   I RSGQ LL +IN+ILD +++EAGR E+    +S  D+    + +   RA+
Sbjct: 305 PRQQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERAR 364

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401
              +++  +ID  +   +  D   + QV+ N +SNA+KFTA G   V + +   +     
Sbjct: 365 SAGLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMERDASGPVL 424

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I++ D G GI +  +  + T+F Q   +I     G GLGL IA+ ++A  GG+  + S 
Sbjct: 425 RIAVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESC 484

Query: 462 LREGVEVIAILPNTRVLNFIP 482
           L EG    A +P        P
Sbjct: 485 LGEGSTFWARIPVEGAEGAEP 505


>gi|28198486|ref|NP_778800.1| histidine kinase/response regulator hybrid protein [Xylella
            fastidiosa Temecula1]
 gi|182681163|ref|YP_001829323.1| histidine kinase [Xylella fastidiosa M23]
 gi|28056570|gb|AAO28449.1| histidine kinase/response regulator hybrid protein [Xylella
            fastidiosa Temecula1]
 gi|182631273|gb|ACB92049.1| histidine kinase [Xylella fastidiosa M23]
          Length = 1190

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 25/314 (7%)

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            ++ + +         ++ +  + L     + ++  +   +    Q E+            
Sbjct: 753  VTFRVLPPWWRSAWGMSVLTGSGLLLLWGVAWNYHRRLRRRARLQLEQHQ---------- 802

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 R+ AE  +LAK++FLA++ HE+RTP+  +LG SE++    +          Y   
Sbjct: 803  -----REVAERASLAKTQFLATLGHEVRTPMTGVLGMSELLLETPLDT----RQHGYATS 853

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  +G+HLL L+N+ LDL++IEAG+  L         ++ + + M++   + K +    +
Sbjct: 854  IQAAGKHLLRLVNDALDLAKIEAGKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYR 913

Query: 354  IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNG 409
            +DP +   V  D   ++Q++LNLL NA KFT   G V + V     +   G  I + D G
Sbjct: 914  LDPEVPQYVHGDADRLQQILLNLLINATKFT-EHGEVVLQVAPGQEQACLGVRIDVADTG 972

Query: 410  PGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            PG++E +   +   F Q +  +  +   G GLGL I + +     G+  + S+L +G   
Sbjct: 973  PGLSEEQCQRLFRRFEQVNGASTAARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCF 1032

Query: 469  IAILPNTRVLNFIP 482
              +LP   VL   P
Sbjct: 1033 RVLLPLPWVLAVQP 1046


>gi|328467898|gb|EGF38938.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332310706|gb|EGJ23801.1| hypothetical protein LMOSA_11920 [Listeria monocytogenes str. Scott
           A]
          Length = 594

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 358 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 415

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 416 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 474

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 475 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 533

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 534 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 589

Query: 483 EDNHE 487
           ED+ E
Sbjct: 590 EDDWE 594


>gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 140/261 (53%), Gaps = 16/261 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I+E +  ++  +     AE     +S F+A MSHELRTPLN ILG+S+++  E     
Sbjct: 1535 RDISERKAVEAAREAALVEAERLARLRSEFMARMSHELRTPLNGILGYSQILLGE---NR 1591

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             NE     +  + +SG+HLL+LIN+ILD ++IEAG+ ELS S I L   +     ++ ++
Sbjct: 1592 LNERQHVMVNVMQQSGEHLLSLINDILDFAKIEAGKQELSLSDIHLPSFLHNLADIVSVK 1651

Query: 343  AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398
            A++K +     I  ++   + AD+  ++QV+LNLLSNAVK++   G++ + V        
Sbjct: 1652 AEQKQLAFICDIAAAVPEGIRADDMRLKQVLLNLLSNAVKYSEQ-GQISLRVTVLKKPFS 1710

Query: 399  -------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                         I+D+G GI  G++ ++   F Q +  I+ +  G GLGL I++ ++  
Sbjct: 1711 EGAPVELGRLRFEIQDSGIGIEAGQLESIFKPFEQAAD-IQYSGGGTGLGLVISRELVRL 1769

Query: 452  HGGQFLIRSKLREGVEVIAIL 472
             G +  + S++ EG      L
Sbjct: 1770 MGSEIFVSSRVGEGSTFWFDL 1790


>gi|229173899|ref|ZP_04301437.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
 gi|228609537|gb|EEK66821.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
          Length = 448

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           + +A+    I+ + ++ I++A   +   +  FT  T  +     +I      KD++    
Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRKFTKATQKIASGEYEIELDVKRKDEIGTLA 212

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + ++   +    E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E   
Sbjct: 213 TSFQKMTKSIK----ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSEEERN 265

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I    + + +L  ++L L+ ++     L     SL   +++ I ML+ + +EK+I
Sbjct: 266 HYLRIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFSLQKQIKDVIFMLEWKWREKDI 325

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +   +     ++  DE  + QV  N+ +N++KF+  GG +   V         ISI DN
Sbjct: 326 AVEFDVPD--ITIQGDENLLHQVWSNVFTNSIKFSNDGGTIEFVVEELES-SVMISISDN 382

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+   E+  +   F +   A     +G GLGL I Q I+  H G   + S   EG  V
Sbjct: 383 GIGMEREEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442

Query: 469 IAILPN 474
              LP 
Sbjct: 443 QVELPK 448


>gi|145350316|ref|XP_001419557.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579789|gb|ABO97850.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 550

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 20/267 (7%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           RAE    AKSRFLA MSHE+RTPLN ++   +++E   +  L     +EY+  +  SG+ 
Sbjct: 17  RAEAATEAKSRFLAHMSHEIRTPLNGLIAVGQLLEDTNLDRL----QREYVSTVRTSGET 72

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI++ILD SR+EA +  L         ++   + +  +++ +K I I   +D  +  
Sbjct: 73  LQALISDILDFSRVEADKLVLQCEPFHPEVVIGNVMEITAMQSAKKKINIGYHVDIGVPK 132

Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-------------QYISI 405
            V  D   ++QV+LN +SNA+KFT  G   + + +G                    +  +
Sbjct: 133 IVMGDAMRLQQVLLNSISNAIKFTDAGNIMIRLYLGREDTTEPTDDMTSDNESWFLHFYV 192

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
           KD G G+ +  I  +  SF Q          G GLGL I++ +    GG     S+ L +
Sbjct: 193 KDTGMGLDQSTIHKIFQSFQQVETGATRKYDGTGLGLAISRKLCEAMGGTMWAESQGLGK 252

Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQY 491
           G      +    V     ++N +S + 
Sbjct: 253 GSTFHFCIKCKAVSEDWMKENQKSRKQ 279


>gi|121603023|ref|YP_980352.1| integral membrane sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120591992|gb|ABM35431.1| integral membrane sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 657

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 159/431 (36%), Gaps = 16/431 (3%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
            F        + +  A              W L  L V  A   + +        I  V 
Sbjct: 72  RFVAWLAAGNYSVSAAGFEGVAVLRLHSASWLLAYLLVSLACALIWRYFWRRTGSIYSVE 131

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
                L    +A+GLCW  +            +T+   + +            +     +
Sbjct: 132 QTYRLLQALALAVGLCWG-IGCGWLYQPESSAVTLGMVSLMGGLSGGLLSGVGVRARLYW 190

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           L   P+ V L    +     ++  L   L   L       ++  +     +  + +   L
Sbjct: 191 LVSLPMAVGLVGALLYHGGEVNPVLPVALLLLLLSNGIFAHNTERHIGSTIELRFKNMFL 250

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + +         E  + AE+ NLAKS FLA  SH+LR P++A+  F E +    +    +
Sbjct: 251 VEQ-------LREQTRVAEQANLAKSNFLAGASHDLRQPVHALNLFLESLSTTRL----D 299

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +     +      +++ +LD SRIEAG  E     + L  ++R+       +A 
Sbjct: 300 ARQETIVTHARAASLASREMLDTLLDFSRIEAGVMEPKPRTMPLAGLLRQLEDEYGPQAD 359

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            K   +  +    +  V+ D   +  ++ NL+ NA+++T  GG   +    T G  + + 
Sbjct: 360 SKG--LVYRSRDCIDHVYCDPSLLSLILRNLVGNAIRYTVRGG--VLVAVRTRGTDKVVE 415

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI       +   F Q S   +   +G+GLGL I + ++ + G +  + S+L +
Sbjct: 416 VWDTGIGIDASHHEKIFHEFHQISNQERDHHKGLGLGLAIVRRLVDSLGLELSLASRLGK 475

Query: 465 GVEVIAILPNT 475
           G      LP  
Sbjct: 476 GSVFSLRLPCA 486


>gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 773

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 129/283 (45%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +  AE     A L  +    +  R+ A +   A+S FLA+MSHE+R
Sbjct: 245 RLTEYLAQLENIVSARTAELKASNARLSQSNEELEVARRTALDMAEARSAFLANMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 305 TPLNGLLGMIALSLDGPLTA----EQQQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 EHIPFDLGSLVEDTANLLSQNAAPSVELACLIDPQFPAQVLGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    I I D G GI +     +L  F Q  + I     G GLG
Sbjct: 421 FT-RFGRVDVKLSHYEGG-VRIEICDTGIGIPQEAQARILQPFTQAGVGITRQFGGTGLG 478

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L +  ++     G+  I S+   G +  A LP    L   P +
Sbjct: 479 LALTYNLCEAMQGRLTISSEAGFGSQFCADLPLPCHLPATPVE 521


>gi|289664298|ref|ZP_06485879.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. vasculorum NCPPB702]
          Length = 1171

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 124/250 (49%), Gaps = 11/250 (4%)

Query: 230  VAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
              +      R+R   AE+ ++AKS FLA++ HE+RTP+  +LG SE++    +    N  
Sbjct: 786  RRQQEWVLARQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL----NAK 841

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + ++  I  +G HLL L+N+ LDL+RIEAG+ EL +       + +E    +   A  +
Sbjct: 842  QRSHVDAIRNAGTHLLRLVNDALDLARIEAGKLELMQQPFDPAQLTQELADFMHPIADAR 901

Query: 347  NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +    +   P+   V  D   +RQ+++NLL NA+KF    G V +T+    G      +
Sbjct: 902  GLRFEYRNRLPTQLVVLGDVTRVRQILINLLGNAIKFAER-GEVSLTLSQ-HGETLRFKV 959

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            +D GPGI   +   +   F QG  A   S   G GLGL I Q +     GQ  +RS+L  
Sbjct: 960  RDAGPGIGPEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGQIRVRSRLGI 1019

Query: 465  GVEVIAILPN 474
            G +    LP 
Sbjct: 1020 GTQFSVDLPL 1029


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     K+ F++ +SHELRTPL ++ G   ++++        +  K  +         L 
Sbjct: 277 QAVERMKNEFISLVSHELRTPLTSMRGSLGLLKMGVYDN-QPDKAKRMLDIAVTDCDRLG 335

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N+IL L R+++G+  L +    + D+++  +  +   A+   I I     P  + V+
Sbjct: 336 RLVNDILSLERLDSGQVTLVKEVCDVADLIKHSVEAIDAIAEAAGIAIQVT--PLSAQVY 393

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
                + Q + NLLSNA+KF+     + V V   S       + D G GI    +  +  
Sbjct: 394 VAPDTIIQTLTNLLSNAIKFSESNTTITVGVQHQSD-CILFHVTDQGRGIPTEHLERIFG 452

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F Q  ++    + G GLGL I +SI+  HGG     S L  G      LP  +
Sbjct: 453 RFQQVDVSDSRQKGGTGLGLAICRSIIQQHGGGIWAESTLGSGSTFYFTLPVYK 506


>gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440]
 gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440]
          Length = 1211

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 134/273 (49%), Gaps = 11/273 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E         + +++A++ N AKS FLA++SHE+RTP+NA++G  E+          +
Sbjct: 688 ISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD 747

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +   H S + LL LI +ILD+ RIE+G   L+   + L  +V     +   +A+
Sbjct: 748 ---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQAR 804

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  +I P+    V  D    +QV+ NL+SNA+KFT   G+V ++V          
Sbjct: 805 QKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFT-EHGQVRISVRLLDDGTSTP 863

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D+G GI   ++  +   F Q +   + A  G GLGL I +++    GG   +
Sbjct: 864 AVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSM 923

Query: 459 RSKLREGVEVIAILPNTRVL-NFIPEDNHESTQ 490
           +S    G +V   +P  RV     P+   E   
Sbjct: 924 KSLEDVGTQVRLKMPLQRVDGAEQPKPLPEQLD 956


>gi|46906529|ref|YP_012918.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091425|ref|ZP_00229222.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226222924|ref|YP_002757031.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825659|ref|ZP_05230660.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254853438|ref|ZP_05242786.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|254932516|ref|ZP_05265875.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|255520928|ref|ZP_05388165.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300764579|ref|ZP_07074571.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|46879794|gb|AAT03095.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020102|gb|EAL10838.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225875386|emb|CAS04083.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606808|gb|EEW19416.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|293584071|gb|EFF96103.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594904|gb|EFG02665.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|300514686|gb|EFK41741.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|328476128|gb|EGF46837.1| two-component sensor histidine kinase [Listeria monocytogenes 220]
          Length = 610

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|332977501|gb|EGK14274.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. 1501(2011)]
          Length = 1148

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 140/340 (41%), Gaps = 56/340 (16%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L  F  +     +        + +  D   E+E+      E R +A   + AKS FLA+
Sbjct: 314 LLKTFRRLYGDFQELKDHSDQTEDDLRDAFDEMEMQNIFIREARDQAVSSSQAKSAFLAN 373

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN+I GF  ++               Y+  I +S  HLL L+N++LD S+IE
Sbjct: 374 ISHELRTPLNSIDGFINLLARHG---DLTAEQDLYVQTIRKSSAHLLALVNDVLDFSKIE 430

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+  L +   SL   + + + M    A EK + +       +  ++  D   ++QV+ N
Sbjct: 431 AGKLVLDKHEFSLYSAIYDVMDMFSPLAAEKGLRMAVMYYNDVPNTIIGDALRVKQVLTN 490

Query: 375 LLSNAVKFTAIGGRVHVTVGWTS--------------------------GRGQYISIKDN 408
           L+ NA+KFT + G V + VG                             G   +I+I+D 
Sbjct: 491 LVGNAIKFTDV-GEVVIRVGIDEVEDVTVIDMPSEQDSIKVEDQSSQPSGSMIHIAIQDT 549

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI---------- 458
           G G++E     +  SF QG  +I     G GLGL I++ +    GG              
Sbjct: 550 GHGLSEQAKSYLFKSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGNIGFYNNDNAGAEG 609

Query: 459 --------------RSKLREGVEVIAILPNTRVLNFIPED 484
                         +S +R G      +P   V   +P+D
Sbjct: 610 QVVVADSALQPTANKSPVRTGATFWFSVP-AHVEVDVPDD 648


>gi|291549132|emb|CBL25394.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14]
          Length = 1059

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 9/285 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            + +  +    +  +   + +  +       ++A+ E+ AK+ F+  MSH++RTP+N IL
Sbjct: 633 STVIGAIILFKDISEFHEQEDRERERLQVAYEKADLESRAKTEFMNRMSHDIRTPINGIL 692

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  ++I        + E  +E +  +  S QHL  L+N++LD+S+IE+G  EL      L
Sbjct: 693 GMIQMIRKNY---KDQEKIEECVDKMDLSVQHLSELVNDVLDMSKIESGYLELQNDTFDL 749

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             ++ +  +++  + +   I      +  + + +  D   +R+++LNL SNA+K+   GG
Sbjct: 750 NTLIDQVEVVVSAQVEAMEISYESHREKVNHTMLSGDTLQIRRIMLNLFSNAIKYNKRGG 809

Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEI-PTVLTSFGQGSIAIKSAEQGVGLGL 442
           R+   V   S  G        I D G G++   I   +   F Q     ++  +G GLG+
Sbjct: 810 RIDTYVKELSFDGMCAAFEFRITDTGVGMSREYIKEELFKPFTQEINDARTQYKGTGLGM 869

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            I + ++   GG   + S    G E    L    V       N E
Sbjct: 870 SIVKGLVEKMGGTIRVSSTPGVGTEFRFYLSFPVVQPEKESQNEE 914


>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1476

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            +  K +F  ++SHELRTPL  I G  + ++        +    +Y+  + ++   +L L+
Sbjct: 942  SEMKIKFFTNISHELRTPLTLIKGPIQELKER---EKLSPKGLQYVDLMEKNTNQMLQLV 998

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N+ILD  +I+ G+  L  S I   +++       ++ ++E  +    ++      VWAD+
Sbjct: 999  NQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEVSFTFQLPDESIMVWADK 1058

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424
            + +  VI N++SNA KFT  GG ++VT G T    + ++ ++DNG GI + ++  +   F
Sbjct: 1059 EKLSIVIRNIISNAFKFTHSGGSIYVTTGLTDDGKRCFVRVEDNGEGIPQSKLTEIFERF 1118

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             QG        QG G+GL +++ I+  H G     S   +G      L
Sbjct: 1119 SQGENTKNPYYQGTGIGLALSKEIVNLHHGSIYAESPEGQGAVFTVEL 1166


>gi|149910151|ref|ZP_01898797.1| sensor protein BarA [Moritella sp. PE36]
 gi|149806737|gb|EDM66701.1| sensor protein BarA [Moritella sp. PE36]
          Length = 911

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 29/348 (8%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
           +  ++ L       F       ++     +      I    +     A +          
Sbjct: 178 SVFIVLLGFFTALIFSWRLVKNVTQPITDMVKVVDRIREGRLD----ARVTGDHTGELAL 233

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA-------------- 248
           +   +      + +   E    I     A S   ET ++ E +N+               
Sbjct: 234 LKNGINSMAKSLSAYHEEMQQNID---QATSDLRETLEQIEIQNIELDMAKKRAQAAARV 290

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHELRTPLN ++GFS  +   ++ P       +Y+  I +S ++LL++IN+I
Sbjct: 291 KSEFLANMSHELRTPLNGVIGFSRQLLKTSLSP----NQTDYLQTIEKSAKNLLSIINDI 346

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S++EAG+  L +   +L D + E  I+L     +K +E+   +D ++   +  D   
Sbjct: 347 LDFSKLEAGKLTLEQIPFNLRDTIEEAAILLAPTVHDKGLELSLHVDKNVPDGIIGDPFR 406

Query: 368 MRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSF 424
            +QVI NLL NA+KFT  G   +H+ +   +G    I   I+D G GI+E +   +  +F
Sbjct: 407 FQQVITNLLGNAIKFTENGNIDIHIELLEWTGNSVTIQTNIRDTGIGISEQQQAQLFQAF 466

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +I     G GLGL I Q ++   GG+  + S L +G      L
Sbjct: 467 NQADTSISRRYGGTGLGLVITQRLVEFMGGEVSLDSDLGQGSNFKFSL 514


>gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
 gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
          Length = 1182

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 38/301 (12%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           QA     +     A     E +  AE+ N  K++F+A +SHELRTPL  I G ++++  +
Sbjct: 418 QAVIIRDVTLQRAAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQ 477

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           T+        + Y+  I ++ + L ++I +ILD + IEAGR  +    + L ++V +   
Sbjct: 478 TLPTAA----RRYVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFG 533

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            L +R  +K + +   I P     V AD K +RQ+++NL  NA+KFT   G V + +G  
Sbjct: 534 CLAVRVADKPVRLCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNR-GEVSLRLGPI 592

Query: 397 SGR-------------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
                                          +++ D G GIA      +  +F Q     
Sbjct: 593 GDAPPSHGNDANSPEITTNGSTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGT 652

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
                G GLGL IA+ +    GG   + S++  G +    L        +P D ++    
Sbjct: 653 NKQFGGTGLGLAIARGLAQRMGGDITVTSQVDLGSQFQCAL-------ALPLDTNQKRAE 705

Query: 492 K 492
           K
Sbjct: 706 K 706


>gi|238752982|ref|ZP_04614442.1| Histidine kinase [Yersinia rohdei ATCC 43380]
 gi|238708804|gb|EEQ01062.1| Histidine kinase [Yersinia rohdei ATCC 43380]
          Length = 1197

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         + 
Sbjct: 628 ISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRNDQ 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  + +     +     + Q  A 
Sbjct: 683 PVDKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQPIAD 742

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+N+     +D  +  +   D   +RQV+ NLL NA+KFT   G V V + W     ++ 
Sbjct: 743 ERNLRFSAWVDDQIPDLLMIDMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPTDEKHG 801

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+ G   T+   F Q +        G GLGL I   ++   GGQ  + 
Sbjct: 802 VMNIDITDTGIGISPGAQATLFQPFSQANEGESPRFGGSGLGLWICHQLIHKMGGQITLE 861

Query: 460 SKLREGVEVIAILPNTRV-LNFIPEDNH 486
           S+L +G  +   LP      + +P+D H
Sbjct: 862 SQLGKGTSLFITLPLETATADDLPQDAH 889


>gi|302864835|ref|YP_003833472.1| ATP-binding region ATPase domain-containing protein [Micromonospora
            aurantiaca ATCC 27029]
 gi|302567694|gb|ADL43896.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
            ATCC 27029]
          Length = 1454

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/458 (22%), Positives = 181/458 (39%), Gaps = 29/458 (6%)

Query: 57   LLVANIGTWFTQNPIFP-MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
            L+ A +G +F  +     M   +T +               +  +G+  + R  + V   
Sbjct: 846  LVDAQLGAFFLADSSEGSMRLRLTASYGYVARGHDVTFGPGEGLVGQAALSRRTIRVKAQ 905

Query: 116  AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              G       L +        L +     LL  +  + ++ F   +  FL    + + ++
Sbjct: 906  PDGRLVVRSGLADTPPADLVVLPVQFEGELLGVIEFAGVATFSELHLAFLERLVLTIGVA 965

Query: 176  TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
               I +    +  LA     A          L ++N ++        +  A +E      
Sbjct: 966  VNTIQANRRTEELLAQSQRLAHEMQDQSAE-LQRTNAELEDKAKLLSEQKANIETQNREI 1024

Query: 236  DETR----KRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +  R    ++A++   A   KS FLA+MSHELRTP    L     +  E      +    
Sbjct: 1025 ELARLGLEEKAQQLTRASAYKSEFLANMSHELRTP-LNSLLLLARLLAENPERNLSAKQI 1083

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            E+   IH +G  LL+LI++ILDLS+IEAGR ++  + I   +I          +A+EK +
Sbjct: 1084 EFARTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGL 1143

Query: 349  EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----- 402
            +   ++   L   +  D + ++Q++ NLLSNAVKFT   G V + +G  +    +     
Sbjct: 1144 DFQVRVSRDLPPALVTDAQRLQQILRNLLSNAVKFT-DNGAVTLRIGLAADNAVFDVPAL 1202

Query: 403  --------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++ D G GI++ ++  +  +F Q          G GLGL I++ +    GG
Sbjct: 1203 TNAQRVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGG 1262

Query: 455  QFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHES 488
               + S   +G      +P       V+   P     +
Sbjct: 1263 TITVSSAPGQGSTFTLFVPDVLAPDAVVAPAPPSPSRA 1300


>gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758]
          Length = 949

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 453 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 509 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 568

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 569 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 627 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 686

Query: 469 IAILPN 474
              +P 
Sbjct: 687 AIRIPL 692


>gi|315633871|ref|ZP_07889160.1| sensor histidine kinase [Aggregatibacter segnis ATCC 33393]
 gi|315477121|gb|EFU67864.1| sensor histidine kinase [Aggregatibacter segnis ATCC 33393]
          Length = 618

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 142/332 (42%), Gaps = 8/332 (2%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKS 210
           S L   +L      +   + +           +  I    +     + FFT +   L +S
Sbjct: 27  SILGVLILAILALCTQMVLSLIFVGTIYWQDLLRSIVFGMISAPFVIYFFTLLVEKLERS 86

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +     +  + + E  +A+        + E+ +  K+  + ++SHELRTPLN I+G 
Sbjct: 87  RQALSRSVVKLQNEVQERLLAEKRLSAALDKVEKISRDKTTLMTTISHELRTPLNGIIGL 146

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S ++  E            Y+  I+ S   L ++ ++I+DL +I+A R EL      L  
Sbjct: 147 SRILLEE----QPTARQSSYLRTINSSAISLSHIFSDIIDLEKIDARRIELDRKETDLYA 202

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +      L A EK++E      P+L   +  D   + Q++ NL++NAVKFT   G V
Sbjct: 203 LLNDISNFAVLIAGEKHLEFRLICPPTLPNWLMLDGVRLSQILWNLITNAVKFTPQ-GSV 261

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +++  T+     I + D G GIAE ++  V   + Q   +      G G+GL I+++I 
Sbjct: 262 TLSIEQTAEDEFAIRVTDTGIGIAEADLEKVFELYYQVD-SHHYKSLGSGIGLSISKTIA 320

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
               G   + S+L +G   +           +
Sbjct: 321 QLMDGDLTVSSELGKGSTFLLTFKAKEAQQPV 352


>gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
 gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
          Length = 927

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 12/265 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+   +++ KSL D     AE+ N AKS FLA++SHELRTPL  I+G  E+++   +   
Sbjct: 428 DISIRVQMEKSLQDVA-DAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYDL--- 483

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++     +  +  S   LL +I++ILD S+IE+ + ++   + +  D+    +      
Sbjct: 484 -SDKAVRLVSTMDNSSSLLLQIISDILDFSKIESEQLKIENKSFNCRDVFAFVLANYVPL 542

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +K+I ++  ++P++  +  +D   ++QVI N+++N++KFT   G V + V W      
Sbjct: 543 ASKKHISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNSIKFTDS-GFVMLHV-WKDSNYL 600

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I IKD+G G+    +  +   F Q      +  +G GLGL I + ++    G   + S+
Sbjct: 601 KIEIKDSGIGMTPAVVMQLFDPFFQVYD-QNNGHKGTGLGLAICEKLINLMDGDIAVNSQ 659

Query: 462 LREGVEVIAILPN---TRVLNFIPE 483
              G      +P      +   IPE
Sbjct: 660 AGLGSTFTIRIPLYGQKYLEQVIPE 684


>gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
 gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
          Length = 538

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 291 EDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTG---- 346

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +EY+  +  + + LL LI++ILDLS+IEAG  E + +   + D++      +Q +
Sbjct: 347 EEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEK 406

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401
               ++ I          +  D   + QVI+N  +NA+KFT   G + +           
Sbjct: 407 NTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPK-GSIQMGYRIDEAKDEI 465

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +I  V   F +      +  +G GLGL I + I+   GG     SK
Sbjct: 466 YFYVKDTGIGIPADKINEVFERFVKL----NTFAKGTGLGLAICRVIVERLGGTIGADSK 521

Query: 462 LREGVEVIAILP 473
             +G      LP
Sbjct: 522 EGKGSCFWFRLP 533


>gi|227891158|ref|ZP_04008963.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867032|gb|EEJ74453.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 492

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +   ++    F     V++++     ++  +  +  A  L  A +F  ++          
Sbjct: 180 IRRNVVLTVAFAILVGVILSIIIAHFLTKKIARLRNATDLVAAGNFDVHL------DTNG 233

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                    D  + ++  +  ++E +++ E     + +F A  +HE+RTPL  I G  E 
Sbjct: 234 DSELDKLTLDFNSMVQSLRESNEEIKRQEER----RRQFFADAAHEMRTPLTTINGLLEG 289

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +       +  E+ ++ I  +    + L+ L+NE LD  +I +G+ ELS++   ++ ++ 
Sbjct: 290 LA---YDAIPEESKEKSIELMRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLN 346

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             I  L+ +A++   +      P    V+AD   + Q+I N+  NA++FT   G + ++ 
Sbjct: 347 NIIKQLRNKAEQVGDKFEL-YTPDKLMVYADYDRLVQIIFNITQNAIQFT-ENGVISISA 404

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANH 452
                    I I DNG G+ E ++  +   + +   + K +     GLGL I   +M  H
Sbjct: 405 E-KGNEETIIRISDNGIGMNEEQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLH 463

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G   + SK  +G       PN 
Sbjct: 464 QGSVTVESKEGKGTTFTLRFPNK 486


>gi|190893144|ref|YP_001979686.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190698423|gb|ACE92508.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 1127

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 169/342 (49%), Gaps = 10/342 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            +++      +      ++      +  T  +++  +L +     + + +  + Y+  H 
Sbjct: 574 GIAVVLALAAIGAILAMIAHQVAAASPETAEVVNRTILVVFFVFSVISGVVCWFYVLAHD 633

Query: 208 FKSNVKILSCQAEKDDL--IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +  S +     L  IA  +   +     ++ AE  N AKSR++  +SHELRTPLN
Sbjct: 634 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLN 693

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG+++++E +   P      +  I  I RS +HL  LI+ +LD+S+IEAGR ++  + 
Sbjct: 694 AVLGYAQILERDDTIPAP---RQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNE 750

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           I++ D + + + M + +AQ K +    +  P+L   V  DEK +RQ+++NLLSNA+KFT 
Sbjct: 751 INIQDFLDQIVEMFRPQAQAKGLAFVHQRSPALPQFVRTDEKRLRQILVNLLSNAIKFTD 810

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   VG+   +    ++ D G GI E ++P +   F +G         G+GLGL I
Sbjct: 811 Q-GSVTFDVGYR-SQVATFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTI 868

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPED 484
            + +    GG+  + S   EG      L  + V+     P++
Sbjct: 869 TRLLTNTLGGEISVSSVRDEGSTFRVRLMLSAVMRAAAPPQE 910


>gi|160942866|ref|ZP_02090105.1| hypothetical protein FAEPRAM212_00342 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445767|gb|EDP22770.1| hypothetical protein FAEPRAM212_00342 [Faecalibacterium prausnitzii
           M21/2]
          Length = 474

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 11/363 (3%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
                 GL   +               +   A  + AL +      +           V 
Sbjct: 119 ALNGPDGLGVAVYRTQSGEVVMAACSLVPYDAEDVAALRLVTSLALVERQVKNAIIISVF 178

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +A++        +  +     +   L         + +  + +            E++  
Sbjct: 179 LAVAILLFTI--MSGLYFVRGIVVPLGQVERTAAGIARGELDVRLPLTGDPH--DEVDRL 234

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++  +  EE    K+ F++S+SHELRTPL +I G+ E +   T+    +E Y++ +
Sbjct: 235 RGTINQMAEGLEETEKMKNEFISSVSHELRTPLTSIRGWVETLM--TLDDPTDENYRKGL 292

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L N++ E+LD SR++ GR  +    + L+  + + ++  + R +++ + + 
Sbjct: 293 EIINNETGRLNNMVEELLDFSRLQNGRIRMECRPLDLVAELTDAVLFCEARIRQEGLLLH 352

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +  V+AD   +RQV +N+L NA+K++A GGR+ V + W      ++ I D G G
Sbjct: 353 YAEPEEMIPVYADPDRLRQVFINILDNAIKYSAPGGRITVKL-WAGEYKAFVEIIDQGRG 411

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   ++  V T F +GS +++    G G+GL +  SIM    G   I+S L  G  V   
Sbjct: 412 IPPEDLENVKTKFYKGSNSVR----GSGIGLALVDSIMTALDGTLDIKSTLGRGTVVTLG 467

Query: 472 LPN 474
           LP 
Sbjct: 468 LPL 470


>gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
 gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
          Length = 581

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP++++   +E ++       +      +I  IH     
Sbjct: 352 ELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGA--ASDPAVAAGFIDKIHLEVDK 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+ DLS IE+G+  L      +   ++     L+ +A+   I +  ++  +L  
Sbjct: 410 LAQLVTELSDLSAIESGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLGVELPETLPQ 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE  + QV++NL+ NA+KFT  GGR+ +    T G+   + + D+G GI E ++  V
Sbjct: 470 VKLDENRVEQVLVNLVHNAIKFTPKGGRIKIGA-RTQGQTLVVYVSDSGIGIPEEDLTRV 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A  S   G GLGL I++ I+  HGG     S   +G      LP 
Sbjct: 529 FERFYKVDKARSS--GGTGLGLAISKHIVQAHGGTIWAESVYGKGATFSFSLPL 580


>gi|307579610|gb|ADN63579.1| histidine kinase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 1184

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 25/314 (7%)

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            ++ + +         ++ +  + L     + ++  +   +    Q E+            
Sbjct: 747  VTFRVLPPWWRSAWGMSVLTGSGLLLLWGVAWNYHRRLRRRARLQLEQHQ---------- 796

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                 R+ AE  +LAK++FLA++ HE+RTP+  +LG SE++    +          Y   
Sbjct: 797  -----REVAERASLAKTQFLATLGHEVRTPMTGVLGMSELLLETPLDT----RQHGYATS 847

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  +G+HLL L+N+ LDL++IEAG+  L         ++ + + M++   + K +    +
Sbjct: 848  IQAAGKHLLRLVNDALDLAKIEAGKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYR 907

Query: 354  IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNG 409
            +DP +   V  D   ++Q++LNLL NA KFT   G V + V     +   G  I + D G
Sbjct: 908  LDPEVPQYVHGDADRLQQILLNLLINATKFT-EHGEVVLQVAPGQEQACLGVRIDVADTG 966

Query: 410  PGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            PG++E +   +   F Q +  +  +   G GLGL I + +     G+  + S+L +G   
Sbjct: 967  PGLSEEQCQRLFRRFEQVNGASTAARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCF 1026

Query: 469  IAILPNTRVLNFIP 482
              +LP   VL   P
Sbjct: 1027 RVLLPLPWVLAVQP 1040


>gi|229032322|ref|ZP_04188295.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
 gi|228729102|gb|EEL80105.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
          Length = 484

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +E    +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNMFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQ 401
             E+ I +  ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEEGIGVHLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTV-LSDNNTV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IMKVMDNGAGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|91772372|ref|YP_565064.1| GAF sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711387|gb|ABE51314.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 556

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   +       Y L + N+++L    +   +  E       + +        +  K+ F
Sbjct: 278 VVGFVLLVLPPGYPLSEKNLQVLEHVGKHIGIAIENAQLFEKTQKAYDELRSLDNLKNEF 337

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            A++SHEL+TP+ +I GFSE++     GPLN E  K+    + R+ + L +LI+ +L + 
Sbjct: 338 FANLSHELKTPMISIKGFSELLGDGKFGPLNVE-QKKANDAVVRNAERLKDLIDSLLYMC 396

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
             + G+Y+     + +  ++   +   +++A   NI    +I  ++  ++ DE+ +   +
Sbjct: 397 MEKEGKYKYDFVPLPIKRLILNSLEKARVQAGSNNIVFRDEIPENIPVIYGDEERLTTAL 456

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            N+L NAVKF    G V V+V        ++ IKDNG GI + ++  V  SF Q   ++ 
Sbjct: 457 NNILDNAVKFMLE-GEVIVSV-QDEADHIHLRIKDNGIGIPKNKVDKVFDSFYQVDGSLT 514

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G G+GL +++ I+  H G+  ++S    G  V  +LP 
Sbjct: 515 RMYGGTGIGLHVSKRIIDVHNGKIWLKSLEGFGTTVHILLPK 556


>gi|18311221|ref|NP_563155.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18145904|dbj|BAB81945.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 471

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 150/309 (48%), Gaps = 12/309 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
           FF V + +    +    +L   LA  +   ++    ++  + K N+K+ +     D++  
Sbjct: 165 FFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEK 224

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +++E     E   + K+ F++S+SHELRTPL +I G++  +  +     + ET
Sbjct: 225 LADSLNIMAEE----IENREILKNEFISSVSHELRTPLTSIKGWAITLNNDF---TDRET 277

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K     I +    L N++ E+LD S+  +G+ +L    I+L + +    + +  RA+ +
Sbjct: 278 LKMGFDIIEKEADRLSNMVEELLDFSKFVSGKIKLKYEEINLKEFIEYLRLYMNPRAERE 337

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           + E+  K       +  D+  ++QV +N++ NA KFT    ++ +   + +  G YI+I 
Sbjct: 338 HKELILKGVTEDFIIVGDKDRLKQVFINIIDNAFKFTHENEKITIEFVY-ADEGIYINII 396

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++ E+P V   F +G  +        G+GL I   I+A H G   I S+L  G 
Sbjct: 397 DTGCGISKEELPRVKEKFYKGKNSKSQN----GIGLSICDEIIALHEGTLEIYSELGNGT 452

Query: 467 EVIAILPNT 475
           +V+  LP  
Sbjct: 453 KVVIYLPKK 461


>gi|150016429|ref|YP_001308683.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902894|gb|ABR33727.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 613

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 138/261 (52%), Gaps = 9/261 (3%)

Query: 227 ELEVAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEV----IELETM 279
            +E  +   +E RK+    +E +  ++ F +++SHELRTP++ I    ++    ++    
Sbjct: 328 RMEELQKSVEEERKKLYEIKEYDRIRTEFFSNISHELRTPISVIFSALQIHELRLKDCIF 387

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + + YK Y   + ++   +L LIN I+D+++I++G + ++E  I +I ++    + +
Sbjct: 388 ENRSIDKYK-YTKIMKQNCYRILRLINNIIDITKIDSGYFNINEHNIDIIALIENITLSV 446

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
               + K + +    +     +  D + + ++ILN+LSNAVKFT+ GG++ V++      
Sbjct: 447 ADYIENKGLSLIFDTNVEEKIMSCDPEKIERIILNILSNAVKFTSSGGKITVSIE-DCYD 505

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I IKD G GI + ++ ++   F Q   ++    +G G+GL + +S++  HGG   ++
Sbjct: 506 KICIKIKDTGRGIPQDKLNSIFERFIQVDKSLARDHEGSGIGLSLVKSLVELHGGVISVK 565

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           SK+  G E +  +P   V N 
Sbjct: 566 SKINYGTEFVIYIPCKLVKNA 586


>gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus
           pseudintermedius ED99]
          Length = 585

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 4/239 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  F+AS+SHELRTP++ + G++E I    +     E   E++  +    + L  
Sbjct: 349 ELEQVKKDFIASVSHELRTPISLLQGYTESIVDGVVTE--PEEINEFLTVVLDESKRLSR 406

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+NE+L++++++A    +++    + D+VR+  +  + +AQE N+ +  ++D  ++S+W 
Sbjct: 407 LVNELLNVAKMDAEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWY 466

Query: 364 -DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   M QV+ NL+ NA ++T  G  + +         Q ++I+D G GIA   +  +  
Sbjct: 467 YDFDRMEQVLTNLVDNASRYTQPGDTISIKATADHDH-QILTIEDTGVGIAPQHLEKLFE 525

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            F +   A K   QG GLGL I + I+  HGG   + S+L +G + I  LP    +  I
Sbjct: 526 RFYKVDSARKRGSQGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPKKSHVEEI 584


>gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 952

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 7/255 (2%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++     E  +  +
Sbjct: 455 EESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL----PEETQRLL 510

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  S   LL +I++ILD S+IE+ + ++         ++   I         K + ++
Sbjct: 511 AAMSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLPLVVRKRLVMY 570

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             I+P +  SV  D   ++QV+ NLLSNA+KFT   G + + V           I+D G 
Sbjct: 571 CFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDT-GCIILQV-RVQDFYLEFRIRDTGL 628

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++  +   F Q    ++   QG GLGL I + +++   G   + S+   G     
Sbjct: 629 GIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESEPGMGSIFTV 688

Query: 471 ILPNTRVLNFIPEDN 485
            +P  + +   P+  
Sbjct: 689 RIPMYQAVASNPQVE 703


>gi|229017296|ref|ZP_04174200.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273]
 gi|229023472|ref|ZP_04179969.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272]
 gi|228737825|gb|EEL88324.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272]
 gi|228743997|gb|EEL94095.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273]
          Length = 351

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 151/354 (42%), Gaps = 16/354 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               +  +         +  + S++++ AL I+         +  + F  +V+  +   I
Sbjct: 9   VMGAIVALFTFLTIIWSIAFFVSSSVMKALEINVSPFITFLISDMVGFVFIVLIWTIIGI 68

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +     +  +  ++                 +VKI + +    ++   ++    ++DE  
Sbjct: 69  LMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMTDELN 122

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +   + E  K Y+  I     
Sbjct: 123 ----AMEKLRQEFVSNVSHEIQSPLTSIKGFARALQDSNL---SEEKRKHYLTIIETETT 175

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 176 RLSKLSQNLLKLTLLESEEYVPERVTYRLDQQLKQVVLNSEPLWAEKEIELDLDLEK--V 233

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT  GG + + +         +SI+D G GI+E +   
Sbjct: 234 QITADQESMSQVWINLIHNSIKFTPSGGMITIQLKEHKE-FLEVSIRDTGIGISEEQKQH 292

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           V   F +   +   A  G GLGL I + ++  H G+  + S+   G + I  +P
Sbjct: 293 VFERFYKVDSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTKFIVRIP 346


>gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 785

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     + L ++    ++ R RA +   A++ FLA+MSHE+R
Sbjct: 259 RLTQYLNELEDIVSARTNELKASNSSLSLSNQELEQARSRALDMAQARAAFLANMSHEIR 318

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +        ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 319 TPLNGMLGMIALALDNPL----PSEQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLEL 374

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
              A  +  +V +   +L     +             SSV  D   +RQ++ NLLSNA+K
Sbjct: 375 ERIAFDMGSMVEDTANLLSQNTAQSVELTCLIASDFPSSVLGDPTRVRQIVSNLLSNALK 434

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G    + ++D G GI E     +   F Q    I     G GLG
Sbjct: 435 FT-RFGRVDVRLAAIVGG-VRLEVRDTGIGIPEDAQARIFQPFTQAGAGITRQYGGTGLG 492

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L + +++     G   IRS+   G    A LP T     IP  
Sbjct: 493 LALTRNLCKAMQGHLHIRSEPGFGSSFTAELPLTVHTEAIPPA 535


>gi|194290604|ref|YP_002006511.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193224439|emb|CAQ70450.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424]
          Length = 619

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 182/461 (39%), Gaps = 25/461 (5%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN----PIFPMWSLITLAVYA 84
           +    D E     +  + + +P   +  +L+  +      N         W  + L + A
Sbjct: 35  ASAQLDVETRAKLMAIVHKNAPTAIVASVLLPALTAIGFWNDVSRGALLGWCAVMLLLTA 94

Query: 85  ANLSLGKKVMNS---DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
             L              +    + W   +       G+ W    L+   T +P + ++  
Sbjct: 95  GGLWFYIGYQRDHALMSRSAHTHKWWNNMRAVAFLTGMTWGSSALLHLYTGSPVFSSVLY 154

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
             TL + L+  A+S   +P  +  +  P++V     A  +     I +  +LA      +
Sbjct: 155 LLTLGV-LAGGAVSQAPVPSNLVYAGVPILVPNLLMAEFAFPGHGIYVQVLLAIYALMLS 213

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              ++L  + V+ +  + +   L      AK   DE ++RA   +  KSRFLA+ SH+LR
Sbjct: 214 RHAFNLQVTLVRAIQLEGDSRRL------AKQFQDE-KERALHASEEKSRFLAAASHDLR 266

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            P++A++   E +         +      +  +    Q +  L   +LDLS++E  +   
Sbjct: 267 QPVHALVMLVEALRARNQSSALHP----LVEQVAAGTQTIDLLFRSLLDLSKLEGRKVLP 322

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           +     L  ++R+ +      A+E  + +  ++   L +  A+   +R+ + NL+ NA++
Sbjct: 323 TLEPCELGALIRDVMSQFAADARESGLTLTPRVPDELYA-MAEPVLLRRALFNLVQNALR 381

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           +T  GG   +       +   + + D G G+    +P + + + Q     +   QG+GLG
Sbjct: 382 YTQRGG--VLVTARQRRKNVRLEVWDTGAGVTPEHLPDIFSPYYQVHNPQRDPSQGLGLG 439

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLN 479
           L I +  +    G + +RS   +G      L   P   V +
Sbjct: 440 LAIFKECVRLMRGTYGVRSVPGKGSVFWFALAPVPAETVAS 480


>gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis FV-1]
          Length = 850

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 430 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 485

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 486 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 545

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 546 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 603

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 604 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 663

Query: 469 IAILPN 474
              +P 
Sbjct: 664 AIRIPL 669


>gi|157693908|ref|YP_001488370.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157682666|gb|ABV63810.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 472

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  FLA++SHELRTPL+ + G++E IE   +        K+ +  I      L
Sbjct: 237 LEKVEQHRREFLANVSHELRTPLSYMKGYAEGIEEGIID------QKKGMQIIQNESTRL 290

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++LDL+++E   Y L+   +    ++ + +  ++  A +K I   + ++     +
Sbjct: 291 SRLVHDLLDLAQLEGESYPLTMEPLVFAQLIHDVLDQMKFIASQKGISFNRALEED-CII 349

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           + D   + QV+ NLL NA+ +T  G  + + +         ++I D G GI + E+P V 
Sbjct: 350 YGDSDRLEQVVRNLLDNAIHYTPSGKSISIEL-LVHQNIAELTITDEGSGIPKAELPHVS 408

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             F + + A    + G GLGL I   I+  H G F+++S+   G   I  LP+       
Sbjct: 409 ERFYRVNKARTRKDGGSGLGLAIVYQIIKKHRGTFVLQSEQGIGTTAIIQLPSAESTEIP 468

Query: 482 PEDN 485
           P  +
Sbjct: 469 PAPS 472


>gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
 gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
          Length = 1417

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 148/266 (55%), Gaps = 16/266 (6%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + + A+    + +++AE  +  KS FLA +SHE+RTPLNAI+GFSEV+  E  GP
Sbjct: 1161 LRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGP 1220

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ YK+Y+ DI  SG H+++LIN++LDLS+IEAG+ +L  SA+S  DI+ EC+ ++Q 
Sbjct: 1221 IGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSANDIINECVALMQP 1280

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I   +  ++ ++ AD + +RQ++LNLLSN +K+   GG+V ++         
Sbjct: 1281 QANRERVIIRASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQVILSTTLEPNGEV 1340

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-------SAEQGVGLGLPIAQSIMANHGG 454
             I ++D G G+   ++   L  F Q   A +                    +++   +  
Sbjct: 1341 SIRVRDTGSGMNPKQLAAALEPFRQVHTARRGGGTGLGLPLT---------KALAEANRA 1391

Query: 455  QFLIRSKLREGVEVIAILPNTRVLNF 480
            QF I S   +G  V    P  RVL+ 
Sbjct: 1392 QFHIDSTPDQGTLVEITFPTERVLSE 1417


>gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 963

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  FLA++SHELRTPL AILG +E++  E +        +E +  I  S   L N
Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPL----PPEAQESVELILESAFRLKN 787

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +++ +LD SR+EAGR+E+S   + L  ++ E     Q  A+   +E   +++  L  +  
Sbjct: 788 MVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEE-LPLMEV 846

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NLL+NA KFT  GG V +  G   G   ++ ++D GPGI + EIP +   
Sbjct: 847 DPDRIVQVVGNLLANAFKFTPPGGSVRLWAG-VRGEEVWVEVQDTGPGIPKEEIPRLFQR 905

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + +          G GLGL I++ I+  HGG+  + S+  +G     ILP 
Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILPL 956


>gi|27376077|ref|NP_767606.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27349216|dbj|BAC46231.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 1123

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 163/353 (46%), Gaps = 17/353 (4%)

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
           +    Y+ ++  +  L+AL +  +       A   +     V       +S         
Sbjct: 564 SQLGHYIGVFVISAGLVALVLGLIYLQTSASAHGENMLVSDVLWKVFFSLS--------- 614

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAK 249
            ++   +++   +     ++       Q       I   +   +     ++ AE  NLAK
Sbjct: 615 -IIIGVVAWLFVLAQQSRRAAEAETRRQTTLLIQEIDAHKRTDAELQRAKEVAESANLAK 673

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           SR++  +SHELR+PLNAI G+++++E        N   ++ +  + RS  HL  LI+ IL
Sbjct: 674 SRYVVGLSHELRSPLNAISGYAQLLEQ---DTTLNTKPRDQVRVVRRSADHLSGLIDGIL 730

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368
           D+S+IEAGR  LS   + L + + + + M +L+A  K I+   +    L   V+ADEK +
Sbjct: 731 DISKIEAGRLYLSRDEVRLSEFLDQLVGMFRLQAAAKGIDFVFRRPAHLPVVVYADEKRL 790

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQV++NLLSNA+KFT   G V   V + S       + D GPGI   ++  +   F +G+
Sbjct: 791 RQVLINLLSNAIKFTQT-GSVQFVVHYRSP-VAEFEVIDTGPGIQGDDLERIFAPFERGA 848

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           + +   + G GLGL I++ +    GG   + S +  G      +  + V N  
Sbjct: 849 LGVSQPQTGTGLGLTISRLLAGVMGGDIKVMSTVGTGSTFKVKILLSEVANPQ 901


>gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli 042]
          Length = 778

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTV----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|237746390|ref|ZP_04576870.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377741|gb|EEO27832.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 1290

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 9/242 (3%)

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + RA+  + AK+ FL+ MSHE+RTP+NAI G +  I    +G  + E   + +  I +S 
Sbjct: 903  KARADAVSKAKTDFLSRMSHEIRTPMNAISGMT-TIAKSVLG--DRERVMDCLDKIEQSN 959

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPS 357
            ++LL LIN+IL++SRIE+G+ EL+   + L  +  +   M++  A+ K + +      P 
Sbjct: 960  RYLLGLINDILEMSRIESGKVELNLEPVLLEQVEAQLDGMMRAPAELKGLSLSFGLRFPL 1019

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
               V+ D     QV +N++ NAVKFT   G +         +        S+KD G GIA
Sbjct: 1020 HCPVYLDVLRFTQVFVNIIGNAVKFT-ESGSIFAHARLIEKKDGMVFVRFSVKDTGIGIA 1078

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               I  +  SF QG+ +      G GLGL I+ S++   GG   + S+  +G E    LP
Sbjct: 1079 PEAIRRIFNSFEQGNESTSMRYGGTGLGLTISSSLVKMMGGSLEVESEPGKGSEFYFTLP 1138

Query: 474  NT 475
              
Sbjct: 1139 LK 1140


>gi|323497639|ref|ZP_08102656.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
 gi|323317388|gb|EGA70382.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
          Length = 566

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + R RAEE   +   F+A ++HELRTPLN +LG +E++   ++    +      + ++ 
Sbjct: 192 QKARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADTSL----DGEQSVLLNNLI 247

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KI 354
            SG  L ++IN+ILD S++ AG  EL  +     DI      + + RA EK I     ++
Sbjct: 248 HSGGLLRHIINDILDFSKMSAGMMELIPTRFDWRDIRDMLTGVFEPRANEKGIGFNLIEL 307

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +P   +   D + + QV++NL+ NA+KFT   G V +   W  G+     ++D G GI +
Sbjct: 308 NPMPEAFIGDRERISQVLVNLVGNAIKFTHQ-GSVSIETDWQEGQ-VSFRVRDTGIGIDQ 365

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +   F Q     K   +G GLGL I + ++    G+  + S    G E    +P 
Sbjct: 366 ESMAQLFDPFVQADRTAKRNYEGTGLGLAICKRLVEMMKGELTVVSSKGVGSEFRVKIPL 425


>gi|301053530|ref|YP_003791741.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375699|gb|ADK04603.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 453

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 231 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 288

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 289 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 346

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 347 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 405

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 406 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 453


>gi|254785978|ref|YP_003073407.1| fog: ggdef domain containing protein [Teredinibacter turnerae
           T7901]
 gi|237684430|gb|ACR11694.1| putative fog: ggdef domain containing protein [Teredinibacter
           turnerae T7901]
          Length = 718

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 152/318 (47%), Gaps = 6/318 (1%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
                 + +V +     ++    L   L   L   L+  + +     +  +++   + ++
Sbjct: 391 VFLRMVWGIVASTLLLGLLGYAYLHRQLFRPLRRLLNDLSEVVSQPTRGRLELSHRRKDE 450

Query: 222 DDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
             LIA       S  +     AE  N AK+ FLA MSHE RTPLN+I+GFS  ++ +   
Sbjct: 451 LGLIAFWFNQRSSQLEVALTEAETANRAKTAFLAKMSHEFRTPLNSIIGFSRRLQDKLKH 510

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            ++   Y E I  IH +G HLL L+N+I+D++ IE+G  +L     S+ ++++E +   Q
Sbjct: 511 QVDEFHY-EAIRRIHTNGHHLLALVNDIIDMTAIESGGVKLRAHEESVNELLQEAVAECQ 569

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSG 398
           + A+  ++ + +K       +  D   + Q+++NLLSNA+K T   G V ++V       
Sbjct: 570 IYAERSDVRLVKKELAVDVLIVCDRNKVVQILVNLLSNALKATRR-GSVQLSVKQLLEDR 628

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y  + D G GI+E +   +   F Q   +   +E+G GLGL + +  +  HGG   +
Sbjct: 629 EHIYFEVVDTGIGISEQDQQKLFKKFSQLE-SRIGSERGTGLGLFLVREFVKMHGGSVDL 687

Query: 459 RSKLREGVEVIAILPNTR 476
            S+L  G      LP  +
Sbjct: 688 TSELGVGTTFTVKLPVKQ 705


>gi|229121553|ref|ZP_04250780.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
 gi|228662017|gb|EEL17630.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
          Length = 417

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 195 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 252

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 253 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 310

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 311 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 369

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 370 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 417


>gi|228945617|ref|ZP_04107967.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814135|gb|EEM60406.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 444

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 222 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 280 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 337

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 338 GDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 396

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 397 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 444


>gi|157413903|ref|YP_001484769.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388478|gb|ABV51183.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 688

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L++E   E++G  +     L  
Sbjct: 410 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSDEEQIEFLGIANSETDRLTR 468

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++  +  
Sbjct: 469 LVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNATEKNVTLAHDIEETIPLILG 527

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 528 NFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPSIKNDGAPQCELVSPLPK 587

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   ++ + EQG GLGL I + I+  HGG+  + S
Sbjct: 588 VRIEIADTGSGISQADQEKIFDRFYRVENSVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 646

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 647 ELGVGTTFWFDL 658


>gi|150018233|ref|YP_001310487.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149904698|gb|ABR35531.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 403

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 2/239 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E     K  FL+ +SHE RTPLN I    + +         ++  K+Y+  I ++   
Sbjct: 139 ELERTLEMKDEFLSLISHEFRTPLNVISSAIQAM-NYICSDELSDKAKKYLRMIRQNTFR 197

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            L L+N +LD++R+ AGR ++++  + ++ + +  I  +      K+I++          
Sbjct: 198 QLRLVNNLLDITRVNAGRIKINKKNVDIVFLTKSIIESIYTYVALKSIDVTFVSLIEKKI 257

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D++   +++LNLLSNA KFT  G  + VT+         + +KD G GI E +   +
Sbjct: 258 IGIDDEKYERILLNLLSNATKFTPEGKPIIVTLSSI-DDKICVEVKDKGIGIPEDKANII 316

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              FGQ   ++    +G G+GL + +  +   GG   ++S+L +G     +LP+  ++ 
Sbjct: 317 FERFGQVDSSLSRQAEGAGIGLSLVKKFIEALGGSISVKSELGKGSTFTILLPSETIIE 375


>gi|304315711|ref|YP_003850856.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777213|gb|ADL67772.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 473

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 5/236 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + A+  F+A++SHELR+PL+ I G+ + +     G +  E  K Y+    +  + +  
Sbjct: 243 RMDNARREFVANVSHELRSPLSTIQGYIDGVVD---GTIPMEKSKFYLEIAQKETRRMSR 299

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI+E+LD++++E+G + L+     + +++R  II ++ R  +K++ +    D     V A
Sbjct: 300 LISELLDITKMESGAFPLNLVEFDINELIRLTIIKMESRINKKDLMVKVDFDSDKDIVEA 359

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + QV+ NL+ NA+KF+  GG +H+ V   S    +I + + G  I   EI  +   
Sbjct: 360 DKDKIEQVLTNLIDNAIKFSNPGGYIHI-VTEKSKDKLFIKVHNKGKTIPPDEIDHIWDR 418

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F +   +      GVGLGL I +SI+  H     + S   EG      L   +V  
Sbjct: 419 FYKVDKSRS-GSPGVGLGLYIVRSIINLHNEDIWVTSSDEEGTTFTFTLKLKKVKQ 473


>gi|229154352|ref|ZP_04282472.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
 gi|228629176|gb|EEK85883.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
          Length = 463

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKEATSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++      +L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPSTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +H++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEYSLIHISVT-EEHKSISITIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1646

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 151/348 (43%), Gaps = 16/348 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
            P  V         AL            + L     +  +    +   L    +   + +
Sbjct: 271 APQMVRDLTQRFGTALPRGPWHLAPEQAVILPVSAGSESTQTVLLIAGLNPCRLVDDAYR 330

Query: 219 AEKDDLIAELEVA---KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSE 272
           +  + +  ++  A       +E R+RAE     + AK+ F +++SHE RTPL  +LG  E
Sbjct: 331 SFLNLVAGQIGAAIGYAQAYEEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLE 390

Query: 273 -VIELETMGPLNNETY-------KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
            ++     GP  N          +  I   HR+G  LL L+N +LD SRIEAGR E+   
Sbjct: 391 ELLARPQPGPSGNNAQTRSDIDDRALIEITHRNGLRLLKLVNALLDFSRIEAGRIEIHTQ 450

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
              +     E   + Q   +   + +  +I  +   V  D +   +V++NLLSNA KFT 
Sbjct: 451 PTDIAAFTAELASLFQSAMEAAGLRLEVEIPATPVVVQLDREMWEKVVMNLLSNAYKFTF 510

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V V V   +G    +S+ D+G G+AE E+P +   F + + A   + +G G+GL +
Sbjct: 511 -FGTVRVAVRAVTGG-VEVSVTDSGIGVAEEEVPRLFERFHRVAGAPGRSVEGSGIGLAM 568

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            Q ++  HGG   + S L EG      LP+  V +   +    +T  K
Sbjct: 569 VQELVKLHGGTVRVDSVLGEGACFTVSLPSGAVQSEREDAGVHATMSK 616



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 112/324 (34%), Gaps = 35/324 (10%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDET 238
            +  H+ ++   G+     + F  I            L     +   +     A   + E 
Sbjct: 1051 VRTHLAELRRTGVPVRYENRFKRIDGTWRWVAWTLALDPDTTRIHGVGRDVTADKETTEA 1110

Query: 239  RKRAEEENLA--KSR----FLASMSHELRTPLNAILGFSEVIELETMGPLNNETY-KEYI 291
             + AEE      K          ++H+    L  I G  +++  +  G    E   +  +
Sbjct: 1111 LRHAEEALRMAQKMEAIGKLTGGVAHDFNNLLQVIGGNLQLLAKDVAGSEKPEQRVRNAL 1170

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              + R      NL +++L   R    R  L+   ++L   VR    ML+ RA    +EI 
Sbjct: 1171 AGVARGA----NLASQLLAFGR----RQPLAPKVVNLGRFVRGLDDMLR-RALGDGVEIE 1221

Query: 352  QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------------WTS 397
              +   L +   D   +   +LNL  NA    +  G++ +  G               T 
Sbjct: 1222 TIVSGGLWNTLVDPFQVENALLNLAINARDAMSGHGKLTIEAGNAALDDAYAKRNAEVTP 1281

Query: 398  GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            G+   +++ D G G++      V   F       K+  QG GLGL +    +   GG   
Sbjct: 1282 GQYVMLAVTDTGAGMSPEVRERVFEPFF----TTKAEGQGTGLGLSMVYGFVKQSGGHVK 1337

Query: 458  IRSKLREGVEVIAILPNTRVLNFI 481
            I S+   G  +   LP  R    +
Sbjct: 1338 IYSEEGHGTTIRIYLPRVRQEEDL 1361


>gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium atrosepticum SCRI1043]
 gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 951

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ +++    N     
Sbjct: 450 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPKDAN----R 505

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     +  +++            +K + 
Sbjct: 506 LVVAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLT 565

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I P++   ++ D   ++QV+ NLLSNA+KFT   G +   VG          ++D 
Sbjct: 566 LYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCR-DGYLEFVVRDT 623

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   E   +   F Q    ++   QG GLGL I + ++    G   I S+   G   
Sbjct: 624 GVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLF 683

Query: 469 IAILPNTRV 477
              +P  + 
Sbjct: 684 GVRIPLYKA 692


>gi|90422866|ref|YP_531236.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90104880|gb|ABD86917.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 895

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 12/250 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAE EN AKS FLA MSHE+RTP+N +LG + ++    + P         +  I  SG 
Sbjct: 362 ERAEAENRAKSEFLAIMSHEIRTPMNGVLGLANMLLETDLDP----EQHHAVETIRESGD 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           +L  ++N+ILDLS++EAGR++      S   +V     +++  A+ K +EI + IDP L 
Sbjct: 418 NLQRILNDILDLSKLEAGRFQFETVDFSPAALVEAVCSVVRSSAKAKGLEIERAIDPGLP 477

Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQYIS--IKDNGPGIAE 414
             +  D   +RQV+LNL SNAVKFT   GRV +       +     +   + D G GIA 
Sbjct: 478 KGLNGDMARIRQVLLNLASNAVKFTDR-GRVTIMANCVSQADGRAVVEWRVADTGIGIAT 536

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--L 472
             +  + + F Q  ++I     G GLGL I++ I+   GG   + S+   G        L
Sbjct: 537 DRVGQLFSDFAQADVSINRRFGGTGLGLAISRRIVEQMGGAIDVSSEQGSGSTFRFSLNL 596

Query: 473 PNTRVLNFIP 482
           P + V+   P
Sbjct: 597 PISDVVVADP 606


>gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 949

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 453 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 509 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 568

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 569 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 627 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 686

Query: 469 IAILPN 474
              +P 
Sbjct: 687 AIRIPL 692


>gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
 gi|306531971|gb|ADN01505.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
          Length = 463

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 5/233 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R E     +  F++S+SHEL+TP+  +LG+ E ++   + P +  T   ++         
Sbjct: 235 RLERLEQIRRDFVSSVSHELKTPITTVLGYLETLKD--LPPDDEATRTRFLETALSHTHR 292

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  +I ++L LSRIE     +      L  ++R  + +++ +A+ +   +  +    L +
Sbjct: 293 LHQIIEDLLLLSRIEQAEAPVPLERAPLAPLIRRAVELVR-QARGETHPLTLEGPEDL-A 350

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  +   M Q + NL+ NA+  T  G  V V    T G    I ++D GPGI    +P +
Sbjct: 351 LPLNPGLMVQALYNLIHNALTHTPPGTPVVVRWRST-GSSVLIQVEDRGPGIPPEALPRI 409

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              F +   +   A  G GLGL I + I+  H G   + S    G      LP
Sbjct: 410 FERFYRVDTSRSRATGGTGLGLSIVKHIVQAHKGTIDVHSTPGHGTTFTIRLP 462


>gi|209516385|ref|ZP_03265241.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           H160]
 gi|209503147|gb|EEA03147.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           H160]
          Length = 638

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 177/451 (39%), Gaps = 21/451 (4%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
            L  P +   D +++  L+ +             +LVA         P+F    +     
Sbjct: 1   MLADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYFPHVPSPPLFIACFVFYALA 60

Query: 83  --YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
                 L +  +     +   + +++   L    +  G  + +         +P+     
Sbjct: 61  NCAGLALWICNRRYPHLLSPRD-WIYLHALRGVLLYSGPGFAVWFAF----QSPQTDLPL 115

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
               +L+ L+     +       F +  P ++  S       H  D ++  ++       
Sbjct: 116 LHTVMLVTLAAGVFMSNGFDLLNFSTSIPFLLLPSIVLHFGSHTFDRTILAIVLAFFFCA 175

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +    ++   + +         +AE   A+      ++ AEE NLAK+RF A+ SH+L
Sbjct: 176 INVYAMSYRKLFRQVVQARVDQQYLAESLAAQ------KRVAEEANLAKTRFFAAASHDL 229

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           R PL+AI   +  +            + +  G I  + + L  L N++LDL+R+E+G  +
Sbjct: 230 RQPLHAIGLLAASLND---PAATPAQHAKTAGHIVYNVEALNQLFNQVLDLARLESGVTQ 286

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           +      L ++        + +A  K + +     P+   V+ D   + +V+ NLLSN+V
Sbjct: 287 VIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTSMVVYDDPVLLERVLSNLLSNSV 344

Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           ++T   G + + +       G +I ++D+G GIA  E   +   F Q     + A QG G
Sbjct: 345 RYTEQ-GAIWLGLRRAGRPSGGFIEVRDSGIGIAAEEHGRIFEEFYQVENPQRDARQGHG 403

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           LGLP  + ++A  GG+  +RS    G     
Sbjct: 404 LGLPTVKRLVALLGGELQLRSAPGRGSVFRF 434


>gi|168019826|ref|XP_001762445.1| ETR3 ethylene receptor protein [Physcomitrella patens subsp.
           patens]
 gi|162686523|gb|EDQ72912.1| ETR3 ethylene receptor protein [Physcomitrella patens subsp.
           patens]
 gi|163644180|dbj|BAF95740.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 747

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 147/355 (41%), Gaps = 39/355 (10%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A  +  L ++       P A    F  +V+ L   +    HV ++ L  ++A  ++  
Sbjct: 246 VVAIRVPLLHLTNFHFSDWPDAGTRPFALMVLMLPLNSARRWHVHELELVEVVADQVAVA 305

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
                 L +S +                       +  R+ AE    A++ FLA M+HE+
Sbjct: 306 LSHATILEESMLARDLLM-----------EQNVALEHARQEAETAIRARNDFLAVMNHEM 354

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP++AI+  S +++   + P      +  +  + +S   L  LIN++LDLSR+E G  E
Sbjct: 355 RTPMHAIIALSSLLQETELTP----EQRSMVETVLKSSNLLATLINDVLDLSRLEDGSLE 410

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNA 379
           L     +L ++ +E + +++  A  K +++   + P +  +   D+K + Q  LN++ NA
Sbjct: 411 LDIQTFNLPNVFKEVLNLVKPIASVKRLQVNLTMGPDIPEIAVGDDKRLLQTALNVVGNA 470

Query: 380 VKFTAIGGRVHVTVGWTSGRG-------------------QYISIKDNGPGIAEGEIPTV 420
           VKFT   G V+V VG                           + ++D G G+   +IP +
Sbjct: 471 VKFTKE-GHVNVIVGLERPEYPRDPRQPDFRPLSGDNHFYLRVQVRDTGLGLNPQDIPML 529

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGV--EVIAIL 472
              F Q          G GLGL I +  +    G   I S+ +  G     I  L
Sbjct: 530 FNKFVQADSTTTRNYGGTGLGLAICKRFVNLMDGHIWIESEGVGRGSIVTFIVKL 584


>gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Angola]
 gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola]
          Length = 949

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 453 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 509 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 568

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 569 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 627 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 686

Query: 469 IAILPN 474
              +P 
Sbjct: 687 AIRIPL 692


>gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1378

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 12/274 (4%)

Query: 221  KDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               ++ E E      ++ R+ A+   E +L K RF  ++SHE RTPL  +L   E +   
Sbjct: 833  ARWILIERERMNFKLEQERRYAQQMHELDLMKIRFFTNVSHEFRTPLTLMLTPLENLLTN 892

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                  + T    +  +HR+ + LLNL+ ++LD  ++E    +       ++  VR+   
Sbjct: 893  I---RADNTVHRQLSLVHRNARRLLNLVTQMLDFKKLEVEETQFMPERGDIVRFVRQIAQ 949

Query: 338  MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VG 394
                 ++ K+I    +          D+  + +V+ NLLSNA KFT   G+V V    V 
Sbjct: 950  TFSDLSEHKHIRYRFETAIESRYADFDQDKLSKVMYNLLSNAFKFTPENGQVTVRLRVVE 1009

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
              SG    IS++D+G GI     P V   F Q         QG G+GL IA      H G
Sbjct: 1010 QESGEAIEISVEDSGIGIPPEAQPKVFERFYQHPTPAHIMNQGSGIGLSIAGEFTKMHDG 1069

Query: 455  QFLIRSKLREGVEVIAILPNTRVL---NFIPEDN 485
               + S+  +G      LP    L     +PE +
Sbjct: 1070 TIGLESQPGKGSTFTVTLPLRETLARRATLPEAD 1103


>gi|78779823|ref|YP_397935.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713322|gb|ABB50499.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 689

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 26/252 (10%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N A++RF++++SHELRTPL  I  + E +       L+NE   E++G  +     L  
Sbjct: 411 ELNAAQNRFISNVSHELRTPLFNIKSYVETLHD-LKDQLSNEEQLEFLGIANSETDRLTR 469

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+G+  +    + +   + + +   +L A EKN+ +   I+ ++  +  
Sbjct: 470 LVNDVLDLSRLESGKI-IQLEEMDIKAAIEQTLRNYRLNATEKNVSLAHDIEENIPPILG 528

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------------------G 400
           +   + QV  NLL N +KF+     + +                                
Sbjct: 529 NFDLLLQVFDNLLGNGLKFSPKNSNLMIRAYAWPDSCPAFPPSKQNDRAPQCELVSPLPK 588

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI++ +   +   F +   A+ + EQG GLGL I + I+  HGG+  + S
Sbjct: 589 VRIEIADTGSGISQTDQEKIFDRFFRVENAVHT-EQGTGLGLSIVRGIIEKHGGEIRMAS 647

Query: 461 KLREGVEVIAIL 472
           +L  G      L
Sbjct: 648 ELGIGTTFWFDL 659


>gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 593

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 4/230 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             ++ +  F+A++SHEL+TP+  I  ++E +       ++ ++ + ++  I R    +  
Sbjct: 365 RLDVMRREFVANVSHELKTPITTIGSYTETMLD---VDMDLDSIRNFLRVIDRENNRMAR 421

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L LS ++    + +  A+   D +   I  L +  +EK+ ++   +   ++S++ 
Sbjct: 422 LVTDLLQLSNMDYKETKWNYEAVDTYDFLSTNINSLDMLIKEKHHKVTLDVPMDINSMYV 481

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D  G  QV  N+ SNA+K+T  GG + VT   + G    I ++DNG GI   ++  +   
Sbjct: 482 DRHGADQVFRNIFSNALKYTRKGGEIKVTAK-SEGASVEIIVEDNGIGIQREDLNKIFER 540

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +      G GLGL IA+ I+ + GG+  I S++  G ++    P
Sbjct: 541 FYRVEKSRSREMGGTGLGLSIAKEILESMGGRISIESEIGVGTKMTLRFP 590


>gi|86137798|ref|ZP_01056374.1| PAS [Roseobacter sp. MED193]
 gi|85825390|gb|EAQ45589.1| PAS [Roseobacter sp. MED193]
          Length = 599

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/437 (22%), Positives = 177/437 (40%), Gaps = 34/437 (7%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99
                +    P     + +VA +  ++    I  +  L    +    L + + +      
Sbjct: 14  AQNRLVREDLPSRFASITVVALLSLYYLPLQIICLLYLGIAFIELVGLVVYRSLERKVTM 73

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
            G         +       L +  + L+        +  +  +  L+IAL+ S ++    
Sbjct: 74  AG-----VTLFITSAFFGILLFNSIPLLLFLQP-EAFPKLAGTMLLVIALNHSVVARAEW 127

Query: 160 PYAVFLSFFPVVVALS--TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
                ++  P++ A++    + +      + +   +   +    Y+ + ++  N      
Sbjct: 128 MLFGLVTALPIICAVAFMIVSFLHSFATPVEIGIAVVILVLGAGYLAHSMWSLN------ 181

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
                              +    AE  + AKSRFLASMSHE+RTPLNAI G +E+++ E
Sbjct: 182 ------------QMTDRLRDALSAAEAGSRAKSRFLASMSHEIRTPLNAICGMAELMDEE 229

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              P   ET +E    + +S Q L  ++N+ILD +++E+G  E++ +  +    +   + 
Sbjct: 230 DADP---ETRRERSQLLQQSAQALTGILNDILDHAKVESGHIEVNLAPATPRAEITSAVE 286

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           M +  A++K +      D S+ S    D + +RQVI NL+SNAVKFT   G+V + V   
Sbjct: 287 MFRAPAEQKGLLFDLSFDDSVPSYAQFDAQRLRQVIGNLVSNAVKFT-ESGQVKIHVSAQ 345

Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    I + D G GIA  ++P + T F +          G GLGL IA+      G
Sbjct: 346 PDEDLTTLTIQVSDTGRGIAAEQVPHLFTEFYRVEDKNAPTVPGTGLGLAIARRFAKMMG 405

Query: 454 GQFLIRSKLREGVEVIA 470
           G   + +    G     
Sbjct: 406 GDITVSTIPMLGSCFTF 422


>gi|46908753|ref|YP_015142.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094035|ref|ZP_00231765.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|46882025|gb|AAT05319.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017585|gb|EAL08388.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|328465185|gb|EGF36453.1| sensor histidine kinase [Listeria monocytogenes 1816]
          Length = 459

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHL-YEKATYVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 KVKLPK 458


>gi|229131594|ref|ZP_04260476.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
 gi|228651820|gb|EEL07775.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
          Length = 421

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 199 ERSEFLASVAHELRTPLTYVRGYADIALKENTPP---EQRLRYLSIIKDESDYITNLVQD 255

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      + +   EK I++      SL  V  DE+ 
Sbjct: 256 LFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLL-VKLDEQR 314

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV+ N+L+NA + +     ++++V     +   I IKD G GI   ++P +   F + 
Sbjct: 315 FEQVMANILNNAYRHSKEHSHINISVT-EEHKHISIKIKDKGEGIPPEDLPHIFDRFYRV 373

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 374 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|228927068|ref|ZP_04090133.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832575|gb|EEM78147.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 444

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 222 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 280 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 337

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 338 GDRNRLKQIFLNIVQNAIKYSNENGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 396

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 397 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 444


>gi|302388284|ref|YP_003824106.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302198912|gb|ADL06483.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 509

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 149/320 (46%), Gaps = 8/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
            L   + +    +++A+    + +  +L + +   + + L      T  +   N+     
Sbjct: 184 GLLPEIKVMMAEMLMAIIMIIVFTDAILMMWVYRSVVSPLGRLQVATKKIRDGNLDFSLE 243

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           +    E   L  + E  +    E+ +   E +      ++++SH+L+TP+ AI G+ E I
Sbjct: 244 VENDDEIGQLCLDFEEMRIRLKESAEEKVEYDKENKELISNISHDLKTPITAIKGYVEGI 303

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                   + E    YI  I+     +  LI+E+   S+I+  +   + S I++    R+
Sbjct: 304 MDGV--ASSPEKLDRYIRTIYNKANDMDKLIDELTFYSKIDTNKIPYTFSKINVAGYFRD 361

Query: 335 CIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVT 392
           C+  + L  ++++IE+ +         V AD + +R+VI N++SN+VK+     G +++ 
Sbjct: 362 CVDEVGLEMEDRSIELGYFNYVDEDVVVIADAEQLRRVINNIVSNSVKYMDKRNGIINIR 421

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G    + I+DNG GI   ++P +   F +   +  S++ G G+GL I + I+ +H
Sbjct: 422 IK-DVGDFIQVEIEDNGKGIPAKDLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIEDH 480

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG+    SK   G E+  +L
Sbjct: 481 GGRIWATSKEGIGTEIHFVL 500


>gi|295103954|emb|CBL01498.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 474

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
                 GL   +               +   A  + AL +      +           V+
Sbjct: 119 ALNGPDGLGVAVYRTQSGEVVMAACSLVPYDAEDVAALRLVTSLALVERQVKNAIIISVL 178

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +A++        +  +     +   L         + +  + +            E++  
Sbjct: 179 LAVAILLFTI--MSGLYFVRGIVVPLGQVERTAAGIARGELDVRLPLTGDPH--DEVDRL 234

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++  +  EE    K+ F++S+SHELRTPL +I G+ E +   T+    +E Y++ +
Sbjct: 235 RGTINQMAEGLEETEKMKNEFISSVSHELRTPLTSIRGWVETLM--TLDDPTDENYRKGL 292

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L N++ E+LD SR++ GR  +    + L+  + + ++  + R +++ + + 
Sbjct: 293 EIINNETGRLNNMVEELLDFSRLQNGRIRMECRPLDLVAELTDAVLFCEARIRQEGLLLH 352

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +  V+AD   +RQV +N+L NA+K++A GGR+ V + W      ++ I D G G
Sbjct: 353 YTEPEEMIPVYADPDRLRQVFINILDNAIKYSAPGGRITVKL-WAGEYKAFVEIIDQGRG 411

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   ++  V T F +GS +++    G G+GL +  SIM    G   I+S L  G  V   
Sbjct: 412 IPPEDLENVKTKFYKGSNSVR----GSGIGLALVDSIMTALDGTLDIKSTLGRGTVVTLG 467

Query: 472 LPN 474
           LP 
Sbjct: 468 LPL 470


>gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
          Length = 473

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 145/335 (43%), Gaps = 14/335 (4%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            LS+ A          +++    +  L +Q   + +   ++   M+   L F  +    +
Sbjct: 134 MLSVMAPITNAYTVKGYVAIHIPLGTLRSQVYTTFNTNYVTFIIMMMLILLFVAFYFIMI 193

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK----------RAEEENLAKSRFLASMS 257
            +    I+    E      +  +  +  DE  +             E +  + +F++++S
Sbjct: 194 HRPLKAIIKGVDEYSKGNLDYRIDLAPGDELHRLGASLNYMSSEINEMDKFQQKFISNIS 253

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           H+ R+PL +I G+ E +     G +  E +++YIG +    + L  L N +L L+ ++  
Sbjct: 254 HDFRSPLTSIKGYLEAMSD---GTIPPELHQKYIGIVLFETERLTKLTNNLLTLNDLDPK 310

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
              L+ S   + D++R  I   +    EK I            V AD + ++QV+ NL+ 
Sbjct: 311 SVRLNYSDFDINDVIRHTIETFEGVCTEKKITFKLTFSSRQLMVHADMEKIQQVVYNLVD 370

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NAVKF+     + ++   T     +IS+KDNG GI + ++  +   F +   +    ++G
Sbjct: 371 NAVKFSHPDSFIAISTT-TKNGRAFISVKDNGIGIPKDDLKKIWERFYKTDNSRGRDKKG 429

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I + I+  HG +  + S    G E +  L
Sbjct: 430 SGLGLAIVREIIQTHGERIDVISTEGVGTEFVFSL 464


>gi|116627885|ref|YP_820504.1| sensor histidine kinase [Streptococcus thermophilus LMD-9]
 gi|116101162|gb|ABJ66308.1| Signal transduction histidine kinase [Streptococcus thermophilus
           LMD-9]
 gi|312278466|gb|ADQ63123.1| Sensor protein [Streptococcus thermophilus ND03]
          Length = 446

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDD---GALNEEIAPNFIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L+    +    +   +        Q     K+ EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAIKYSPDGGKITVSMKTTDTQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|323700587|ref|ZP_08112499.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323460519|gb|EGB16384.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 983

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 25/358 (6%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQ-AIMSMHVLDISLAGMLATALSFFTYIT 204
           L A+ +                  VV A++ Q         D +   + A +      I 
Sbjct: 630 LAAIGVIGTPPAAWLGVPLRQGERVVGAMAVQDYANPRQYSDEAATFLTAVSEQVAMAIE 689

Query: 205 YHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
               +  +  L+ + E   +   AE+E  K+  +E  +R    +  KS  ++S+SHELRT
Sbjct: 690 RKTIEEALTRLNEELEDKVEQRTAEIEARKAELEEANRRLMTLDEIKSSMVSSVSHELRT 749

Query: 263 PLNAILGFSEV-----------IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           PL +I GF+++           +             +  +G I   G+ L  LIN+ LD+
Sbjct: 750 PLTSIRGFAKLCAKDFTRHFLPLARGEQLSAKGRRIQGNLGIIDTEGERLTRLINDFLDI 809

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-IEIFQKIDPSLSSVWADEKGMRQ 370
           +RIE+G+   ++  ++   ++RE +            +E+   +  ++  + AD   ++Q
Sbjct: 810 NRIESGKACWNDDTLNPTRVIREAVASASGGFNASRSVELVTVLPETVRRIKADPDKIKQ 869

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG--QGS 428
           V++NLL+NA KFT   GRV V +   +     +S+ D G GI E E+  +   F   +  
Sbjct: 870 VLINLLNNAYKFTRQ-GRVTVALLEHAE-SLTVSVVDTGSGIPEDELNYIFEKFHKSRLG 927

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
             +++  QG GLGL I + I+ ++GG   ++S L  G      LP       +P D++
Sbjct: 928 DTVRNEAQGTGLGLAICKEIVEHYGGTIRVQSTLGRGSVFTFTLP------TVPADDN 979


>gi|255025902|ref|ZP_05297888.1| hypothetical protein LmonocytFSL_05345 [Listeria monocytogenes FSL
           J2-003]
          Length = 459

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT   G + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHL-YEEGTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|153810020|ref|ZP_01962688.1| hypothetical protein RUMOBE_00401 [Ruminococcus obeum ATCC 29174]
 gi|149834198|gb|EDM89278.1| hypothetical protein RUMOBE_00401 [Ruminococcus obeum ATCC 29174]
          Length = 856

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 9/288 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             S V  +       D   + +  K+      + A+ EN AK+ F+  MSH++RTP+N I
Sbjct: 434 ESSVVHGIVLFKNTSDFHEKEQQEKARLQMAYEEADSENRAKTEFMNRMSHDIRTPINGI 493

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G  ++I              + +  I  S +HLL L++++LD+S++EAG +E+ E    
Sbjct: 494 MGMVDIIRKNRDDWG---KVDDSLDKIQLSTRHLLELVSDVLDMSKLEAGMFEIHEDVFD 550

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           + +++ E   ++  +  E +I   +       +++      +R++++NLLSNA+K+    
Sbjct: 551 MNELMDEVAALVDAQLVESSITHCKHRSNIQHTALKGSSLQLRRIMVNLLSNAIKYNKPN 610

Query: 387 GRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEI-PTVLTSFGQGSIAIKSAEQGVGLG 441
           G +       S  G        I D G G++E  I   +   F Q     ++  +G GLG
Sbjct: 611 GTIDTYAEELSCDGTTVWYEFKIVDTGIGMSEEFIKEQLFKPFTQEKNDARTLYRGTGLG 670

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           + I ++++   GG   + S+L EG      LP     N I     E +
Sbjct: 671 MSIVKALLDKMGGSIEVESQLGEGSTFTFRLPFKVDENAIETKKEEQS 718


>gi|54301706|ref|YP_131699.1| sensor protein TorS [Photobacterium profundum SS9]
 gi|46915126|emb|CAG21899.1| hypothetical sensor protein TorS [Photobacterium profundum SS9]
          Length = 1035

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 143/282 (50%), Gaps = 24/282 (8%)

Query: 209 KSNVKILSCQAEKDDLIAEL-----EVAKSLSDE------TRKRAEEENLAKSRFLASMS 257
           K+ + +   Q E   L+ E      E   +L+ E       R++AE+ N AKS FLA MS
Sbjct: 493 KNALALREHQNELQKLVDERTTQLTEANNALNSEVAKHAKAREQAEQANKAKSSFLAHMS 552

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N I+G   +++  T+        K Y   I  SG+ L+ ++N +LD S+IEAG
Sbjct: 553 HEIRTPMNGIMGTLHLLDDTTLDN----AQKHYTKTIISSGEILMGVLNNVLDYSKIEAG 608

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
            ++++E+      IV   + ML+ RA+EKNI++   +   +   +  D   + Q++ NL+
Sbjct: 609 CFDINETNFRTDLIVGNVVNMLKARAKEKNIKLTYAVASDVPDYLHGDANKIIQILTNLV 668

Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NA+KFT +G   + V +       ++     + D G GI E +   +   F Q + +  
Sbjct: 669 GNAIKFTNLGSVTIRVQLKEQLPEDRFLLKFEVLDTGKGIPERKQAVIFEPFEQVTQS-- 726

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             E G GLGLPI++      GG+ ++ S+   G   I  LP 
Sbjct: 727 --EGGTGLGLPISKRFAEMLGGELMVYSEPDIGSRFILTLPL 766


>gi|260060660|ref|YP_003193740.1| two-component system sensor histidine kinase/response regulator
           [Robiginitalea biformata HTCC2501]
 gi|88784790|gb|EAR15959.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Robiginitalea biformata
           HTCC2501]
          Length = 969

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 173/516 (33%), Gaps = 67/516 (12%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWS 76
            HL    P +  +          + F V       ++ + ++  +          F +W 
Sbjct: 178 FHLTARSPEQPFY---HQIFQFNTSFNVFMFGAALIIFIYHLLQFLYMRERVILWFVLWL 234

Query: 77  LITLAVYAA-----------------------NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
                  A                                  + +   + +      + G
Sbjct: 235 GFCTLTQAMTVGLLIGDISRFRLPVQIAISNGVFYTFWFFGRAYVGSRQKFPVLDRFIKG 294

Query: 114 QIAIGLC-----WTLLTLVEPGT------WTPEYLTIYKSATLLIALSISALSNFMLPYA 162
              + L         + + +P        W   +L +Y   +L +A+++    +    Y 
Sbjct: 295 LALLTLAEIITVVAYVIVFDPQAYFTAVGWHYPFLLVYTLGSLGLAIALVLKRDAFARYF 354

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
              +    +  L         +    L         F   + Y L       ++ + +  
Sbjct: 355 GIGTLVGGLGLLVGIFWSMGLINLRFLGVDPYATGIFLQLLIYSLG------IAYRRQTL 408

Query: 223 DLIAELEVAKSL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              A  E  ++  S+   +R  + N  KSRF  ++SHE RTPL  I G  +     +   
Sbjct: 409 AKQAAEERVRAAVSESEVRRISDLNALKSRFFTNISHEFRTPLTLIRGPIQAALDRSGKE 468

Query: 282 LNNETY--KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             +E       +  + R+ + L  L++E+L+LSRIE+G+ E+  +   +  +++  +   
Sbjct: 469 GGSEVRLPARDLDMVRRNTERLEGLVDELLELSRIESGKAEILLTHGDVEQVLKSVVFAF 528

Query: 340 QLRAQEKNIEIFQK-------------IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           +  A+  NI +                 D S  + W D   + +++ NLLSNA K+T  G
Sbjct: 529 ESLAERSNIALRVDLGDAGAAQAAEMGQDSSEVAAWYDRNKLEKIVYNLLSNAFKYTPEG 588

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V             + I D G GI   ++  +   F +          G G+GL + +
Sbjct: 589 GIVSFR-SRLESGRLLMEISDTGKGIPAADLGQIFERFYRVEG---DEAHGTGIGLALCK 644

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            ++   GG+  + S   +G      LP  R     P
Sbjct: 645 ELVELQGGELSVESMPGKGTSFRVGLPARREDFPKP 680


>gi|312959784|ref|ZP_07774300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311285950|gb|EFQ64515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 774

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 6/283 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E       L  +    +  +  A     A++ FLA+MSHE+R
Sbjct: 245 RLTEYLGQLEDIVSARTLELKASNQRLSQSNDELEAAKINALGMAQARAAFLANMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    N   ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 305 TPLNGLLGMIALSLDSPL----NAEQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGSLVEDTANLLSQNAAPSVELTCLIDPQFPAQVLGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +         I + D G GIA+     +   F Q    I     G GLG
Sbjct: 421 FT-RFGRVDVRLSSV-DDTVSIEVCDTGIGIAQDAQMKIFQPFTQAGAGITRQFGGTGLG 478

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           L +  ++     G+  I S++  G +  A LP    L   P+ 
Sbjct: 479 LALTYNLCEAMKGRLSISSEVGFGSQFCAQLPLPAHLPASPQA 521


>gi|255526304|ref|ZP_05393220.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296185226|ref|ZP_06853636.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255510017|gb|EET86341.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296050060|gb|EFG89484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 1116

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 182/444 (40%), Gaps = 23/444 (5%)

Query: 49  SPILPLFVLLVANIGTWFTQ--NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
                     V N   +  +  +     ++++ + +    L +G++++          + 
Sbjct: 219 FLFGITLAAAVYNFILFIRRKKDKAPLYFAVVCVLICLRTLLVGERLIYWVFSNMSYVIN 278

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
              LL       +   +L +    T       +  S  L IA     L    + Y   + 
Sbjct: 279 VKLLLWTFFLY-IPVLILFMSNFYTELINEKVVKFSKILGIAYFFIILILPPVYYINLIL 337

Query: 167 FFPVVVALSTQAIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVK----------- 213
              ++       I+S  +    +  +      ++   ++   +     +           
Sbjct: 338 PVEIISDFMILYIISKMLYMHIIKKSNNAIVIVAMIIFLGTRINDILYEYSVIDTGSYAP 397

Query: 214 ---ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              ++   A+      +  +A S  +E  +R +  +  K  F A+ SHEL+ PL+ I+G 
Sbjct: 398 IGILIFIFAQSYVASDKFSMAFSKIEEMTERLKSVDKMKDDFFAATSHELKAPLDGIVGL 457

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+ +       L N+  +E +  I  S + L NL+N+ILD S+I++    L    + +  
Sbjct: 458 SKSLIDCNSNQLGNDE-RETLILIKNSARRLSNLVNDILDFSKIKSNDINLIMKPVDIRQ 516

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++       +     K++EI  K++ S+  V+ DE  ++Q++ NL+ NAVKFT   G++ 
Sbjct: 517 LINMVTKSFKSFMSNKSVEILNKVEESVPYVYGDENRIQQILYNLIGNAVKFTNE-GQIE 575

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           ++     G   +I+I+D G GI E +I  +   + Q    I     G GLGL + + ++ 
Sbjct: 576 ISAA-EKGDYIFITIEDTGIGIDESDIYKIFQPYNQVEG-INKQYHGSGLGLYVTKKLVQ 633

Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474
            HGG+  ++S L EG E    LP 
Sbjct: 634 LHGGELEVKSTLGEGSEFTFNLPK 657



 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 139/287 (48%), Gaps = 7/287 (2%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILG 269
            ++ S Q + +    ++E      +E +K   +    +  K+ F  +MSHELRTPLN I  
Sbjct: 817  EVTSLQGKVESTTKQVEELNEGFEENKKMLSQVIKNDKLKTEFFTNMSHELRTPLNVIWS 876

Query: 270  FSEVIELETMGPLNNE-TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
              ++I+      L       +Y+  + ++   LL LIN ++D ++IE G   L  +  ++
Sbjct: 877  TIQLIQSINANKLAAGYDMDKYLNIMSQNTLRLLRLINNLIDTTKIEGGYLSLKLANGNI 936

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            I  + E  +      Q + IE+    +     +  D   + +++LNLLSNA+KFT  GG 
Sbjct: 937  ISTIEEITLSAASHVQSQGIELIFDTEVEEKYMAFDGDKIERIMLNLLSNAIKFTEEGGS 996

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            + V + +       IS+KD G GI E ++ ++   F Q   ++    +G G+GL + +S+
Sbjct: 997  IFVNI-YDLQDKVKISVKDTGIGIPEDKLDSIFDRFTQVDTSLSKKLEGSGIGLALVKSL 1055

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            +    G+  ++S L  G E I  LP   V     E+  ++ + K ++
Sbjct: 1056 VEMQKGRIYVKSTLGYGSEFIVELPAVTVKEN--EELDQNIKSKSFS 1100


>gi|228983851|ref|ZP_04144046.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775900|gb|EEM24271.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 424

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 195 ERSEFLASVAHELRTPLTYVRGYADIASKEATSP---EQRLRYLSIIKDESDYITNLVQD 251

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I++     P+L  V  DE+ 
Sbjct: 252 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLL-VNLDEQR 310

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +H++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 311 FEQVVVNILNNAYRHSKEYSLIHISVT-EEHKSISITIEDEGEGIPLEDLPHIFDRFYRV 369

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 370 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 415


>gi|225418785|ref|ZP_03761974.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme
           DSM 15981]
 gi|225041688|gb|EEG51934.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme
           DSM 15981]
          Length = 674

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 162/440 (36%), Gaps = 10/440 (2%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
           R    L++         +    +    +  +F    I  + S + L ++  +       M
Sbjct: 222 RRRERLYLTFSITCLTTVLRLGMESNALVQYFLPEGIGFILSRVFLLLFTLHSLCICLFM 281

Query: 95  NS--DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
                I++  +  +           G+C  L       +     +    S  L I     
Sbjct: 282 IQVFSIRLNRLLRFVYAFCFFLPMAGICL-LPYAKAVNSMFLATIPYAVSIVLAIRSGKI 340

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
               + L Y   +  F +   L ++ +    +    +   +   LS    ++    +++ 
Sbjct: 341 GRDPYRLLYLCSMVTFVIYGPL-SKTVFEGDMFVPGIVPNMFLLLSQCVMLSRSYAQAHE 399

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++    A  + L+   E   +  + T ++ E    A    ++++SH+L+TPL  +  + E
Sbjct: 400 EVERVNANLEALV---EQRTAQLNRTNEQLEASQTALREMISNISHDLKTPLTVLNNYLE 456

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++  ET+   +     EY+G  +     L  LI  + +++R+E G         S+  ++
Sbjct: 457 LLGDETI-ASSERERTEYLGIAYHKNLDLQRLIQNLFEVTRMEGGTVTYRIEWFSVDRLM 515

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E         Q+K ++   + D     +  D   +  V+ NL+ NA++ T  GG + ++
Sbjct: 516 GEIARKYADLIQDKGLDFRLEADRGT-ELHIDSIRIWSVLDNLVYNALRHTPKGGSIALS 574

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G    + + D G GI    IP +   F + S      +   GLGL I ++ +   
Sbjct: 575 I-HKKGDLARLQVADTGEGIEARHIPHIFERFYKVSHERGERDGSSGLGLYIVKTTVEAM 633

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + S   +G       
Sbjct: 634 GGTVEVESTPGKGTVFTVTF 653


>gi|117926967|ref|YP_867584.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610723|gb|ABK46178.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 138/280 (49%), Gaps = 8/280 (2%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHE 259
             +        + I   + E+ ++I + EV +  + E   +  E  + AK  F+A MSHE
Sbjct: 115 ILLAKAKLFLELYINRKKVERTNIILQSEVLRRQATETAYRECESRHEAKRVFIAKMSHE 174

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            RTP+N+++G  +++E    G   +E   EYI  + ++  HL +++  +LD++++EAG  
Sbjct: 175 FRTPMNSMIGMLDMLE----GTPLSEEQFEYIDSMRQATDHLTSMVGNLLDITQLEAGII 230

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSN 378
           ++ E   SLI +V+  I +++  A +K I     I P +      D   ++Q+++NLL N
Sbjct: 231 KIKEKPFSLIALVKNVINIIRPLAFKKKILFIPYISPDIAPWFIGDANRLQQILVNLLGN 290

Query: 379 AVKFTAIGGR-VHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           A+K+T  G   + ++    + R      + D G GI       +  +F +G+       +
Sbjct: 291 AIKYTHWGSVALLISAKPVNSRYNVEFKVVDTGDGIDLENQEKIFQAFVRGAYNNAETTE 350

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           G GLGL I ++++    G   ++S  + G      +P TR
Sbjct: 351 GTGLGLSICKNLVDLMQGTIELKSTPQHGSTFSVSIPLTR 390


>gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1341

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELA-DGTEECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQVEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVARVEPEQDKE 1056


>gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
 gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
          Length = 778

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIKVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|302670202|ref|YP_003830162.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394675|gb|ADL33580.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1015

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A E + AKS FL++MSHE+RTP+NA+LG +E+I  E+     +    EY   +  +G  L
Sbjct: 388 AREASEAKSAFLSNMSHEIRTPINAVLGLNEMIVRES----EDPQILEYANSVKSAGNSL 443

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360
           L ++N+ILD S+IEAG+ ++      L   + + + ++ ++A++K++E+   ID +L + 
Sbjct: 444 LGIVNDILDFSKIEAGKMDILPVEYHLSSTINDLVNLIAVKAEDKHLELKFNIDKTLPTQ 503

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416
           +  DE  ++Q + N+L+NAVK+T   G V + + +             + D G GI E +
Sbjct: 504 LIGDEIRIKQCVTNILTNAVKYTEK-GSVSLNISYRKDGEDSIYLRFQVIDTGIGIKEED 562

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           +  + + F +       + +G GLG+ I ++++A  G +  ++S   EG +   
Sbjct: 563 LEKLYSPFERIEETRNRSIEGTGLGMSIVKNLLALMGSRLEVKSVYGEGSDFSF 616


>gi|90962135|ref|YP_536051.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90821329|gb|ABD99968.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
          Length = 492

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +   ++    F     V++++     ++  +  +  A  L  A +F  ++          
Sbjct: 180 IRRNVVLTVAFAILVGVILSIIIAHFLTKKIARLRNATDLVAAGNFDVHL------DTNG 233

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
                    D  + ++  +  ++E +++ E     + +F A  +HE+RTPL  I G  E 
Sbjct: 234 DSELDKLTLDFNSMVQSLRESNEEIKRQEER----RRQFFADAAHEMRTPLTTINGLLEG 289

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +       +  E+ ++ I  +    + L+ L+NE LD  +I +G+ ELS++   ++ ++ 
Sbjct: 290 LA---YDAIPEESKEKSIELMRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLN 346

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             I  L+ +A++   +      P    V+AD   + Q+I N+  NA++FT   G + ++ 
Sbjct: 347 NIIKQLRNKAEQVGDKFEL-YTPDKLMVYADYDRLVQIIFNITQNAIQFT-ENGVISISA 404

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANH 452
                    I I DNG G+ E ++  +   + +   + K +     GLGL I   +M  H
Sbjct: 405 E-KGNEETIIRISDNGIGMNEEQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLH 463

Query: 453 GGQFLIRSKLREGVEVIAILPNT 475
            G   + SK  +G       PN 
Sbjct: 464 QGSVTVESKEGKGTTFTLRFPNK 486


>gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300073482|gb|ADJ62881.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 916

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/431 (21%), Positives = 172/431 (39%), Gaps = 42/431 (9%)

Query: 75  WSL-ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT 133
           W +     +      +  ++  S +++ +++ W+       +A+G    +      G + 
Sbjct: 258 WIVHAPATLGCLATLIYLRMSQSLVELEQLWRWKTLYRCMILALG---GVTLWTALGDYR 314

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV--------- 184
                   SA L     ++++ +             +  AL+  A+    +         
Sbjct: 315 DAAPVANASAGLSYLAWLASMLHAWRRRLDNARMLVLSFALAWLAMSMKMLELNGVFDGD 374

Query: 185 --LDISLAGMLATALSFFTY---------ITYHLFKSNVKILSCQA-EKDDLIAELEVAK 232
              D   A +    L   T          +     +    +L  +  E+  L   +    
Sbjct: 375 LLPDWRFAALFQIGLLCMTSVIVTGRAVDLHRKHEQMQWTMLYLRVREQLKLEKAVAART 434

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               +  + A+E NLAKS FL  +SH+LRTPL +ILGF+++I+    GP        +  
Sbjct: 435 QELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQAS-GGPHAG-----HGR 488

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I RS +H+L ++N+++D +R +        + + L  +++E     Q+ AQ ++     
Sbjct: 489 IIMRSARHMLTMVNDLIDYARGD-PLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTL 547

Query: 353 KIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYISI 405
            I P L  V A D + + +++ NLL NA K+T   GR+ + V W +           I +
Sbjct: 548 DISPDLPPVLALDARRLHRILGNLLDNAAKYTRE-GRIGLHVQWQADHADAGKGALQIEV 606

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GIA      +   F +        + G+G+GL I +  +   GG  ++ S+   G
Sbjct: 607 SDTGCGIAPQFQSRIFEPFERADA--DRRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMG 664

Query: 466 VEVIAILPNTR 476
             +   LP  R
Sbjct: 665 TRMHLQLPAER 675


>gi|37679812|ref|NP_934421.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198557|dbj|BAC94392.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 762

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 142/340 (41%), Gaps = 18/340 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            ++  AV       + +    + +S ++  ++ A            +     K+  +I  
Sbjct: 151 AIVLIAVLEIILVALFSYFLGSYLSQNLYQLTRAAERVANDGPGFQLQ---LKAKDEIGK 207

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A  D +   L  +    ++ R +AE  N +KSRFLASMSHE+RTP+N +LG   ++  
Sbjct: 208 VAAAFDSMSHNLATSYQELEQARTQAELANESKSRFLASMSHEIRTPMNGVLGLLGILGE 267

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +        +  +     SG+ LL++IN+ILD SR+EA    L      L   V E +
Sbjct: 268 TKLDNH----QQNLVHTAKESGELLLSIINDILDFSRMEANTLILYPRPFELKSCVEEIV 323

Query: 337 IMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394
              +  A+ K + +     D     V  D    RQV+LNLL NAVKFT   G V + V  
Sbjct: 324 NSFEPLAKTKGLYLSLTFNDECDYVVVGDSNRYRQVLLNLLGNAVKFTQK-GSVSLHVTT 382

Query: 395 WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              G   YI   I D G GIA   +  +   F           +G GLGL I + +    
Sbjct: 383 QNEGDKLYIRCEINDTGIGIAPDAMAILFEEFTMVDQGYSRTREGSGLGLAICKRLAQLM 442

Query: 453 GGQFLIRSKLREGVE--VIAILPNTR----VLNFIPEDNH 486
            G+  + S++ +G        +P            P+++ 
Sbjct: 443 EGEINVESEVGKGSCFVFSVEMPLAEHDTVTQQAQPDNDS 482


>gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 499

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 5/232 (2%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F++++SHE++TPL  I  + E++        + +T  E++  I+     L  LI+ +L+
Sbjct: 271 EFVSAVSHEMKTPLAGIKAYVELLADGE--AEDEQTRDEFLQVINSQADRLQRLIDNLLN 328

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           L+RIEAG   +++   SL +++ E   ++   A++KNI +   + P    V  D   + Q
Sbjct: 329 LARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLISDLSPMYLGVLVDRDMIMQ 388

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
             +NLLSNA+K+T   G+V +       R     ++D G G++  +   V   F +    
Sbjct: 389 AAINLLSNALKYTPDNGKVTLR-SRLQDREVVFEVEDTGVGLSPEDCDRVFEKFYRVKKD 447

Query: 431 IKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            K A  G GLGLP+A+ I+   HGG+  + S+   G      LP  +V   +
Sbjct: 448 QKMAS-GTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLPTVQVAETV 498


>gi|71274866|ref|ZP_00651154.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Dixon]
 gi|71901227|ref|ZP_00683328.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Ann-1]
 gi|71164598|gb|EAO14312.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Dixon]
 gi|71729002|gb|EAO31132.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase A, N-terminal:Two component regulator
            propeller:Two component regulator three Y [Xylella
            fastidiosa Ann-1]
          Length = 1209

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 168/411 (40%), Gaps = 41/411 (9%)

Query: 86   NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
             +  G+++     +  E+      L+VG   +          +P +    Y         
Sbjct: 663  VIRAGRRIDFPVDRPFELLPNDRQLIVGARLLS-------FGDPLSNRYSYWLKGFDTGW 715

Query: 146  LIALSISALSNFMLPYAVFLSFFPVVVALS---------TQAIMSMHVLDISLAGMLATA 196
            +   S        LP A +         +           + +         ++ +  + 
Sbjct: 716  IDQGSSGTREFSSLPPADYTLLIQGTDPMGNLSRIHLVTFRVLPPWWRSAWGMSVLTGSG 775

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L     ++++  +   +    Q E+                 R+ AE  +LAK++FLA++
Sbjct: 776  LLLLWGVSWNYHRRLRRRARLQLEQHQ---------------REVAERASLAKTQFLATL 820

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
             HE+RTP+  +LG SE++    +          Y   I  +G+HLL L+N+ LDL++IEA
Sbjct: 821  GHEVRTPMTGVLGMSELLLETPLDT----RQHGYATSIQAAGKHLLRLVNDALDLAKIEA 876

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+  L         ++ + + M++   + K +    ++DP +   V  D   ++Q++LNL
Sbjct: 877  GKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYRLDPEVPQYVHGDADRLQQILLNL 936

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSI-AI 431
            L NA KFT   G V + V     +   G  I + D GPG++E +   +   F Q +  + 
Sbjct: 937  LINATKFT-EHGEVVLQVAPGQEQACLGVRIDVVDTGPGLSEEQCQRLFRRFEQVNGAST 995

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             +   G GLGL I + +     G+  + S+L +G     +LP   VL   P
Sbjct: 996  AARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCFRVLLPLPWVLAVQP 1046


>gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
 gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|255022541|ref|ZP_05294527.1| sensor histidine kinase [Listeria monocytogenes FSL J1-208]
          Length = 459

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLILASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT   G + V + +      ++ I+D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQVHL-YEETTNIFVEIQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ +I  +   F + + +    E   GLGL I + I+  H G+  ++S   +G   
Sbjct: 393 GVGISKADIAKIFERFYKVNESRTREEGSSGLGLSICKKIITLHRGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|237715249|ref|ZP_04545730.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
 gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|163816646|ref|ZP_02208009.1| hypothetical protein COPEUT_02836 [Coprococcus eutactus ATCC 27759]
 gi|158447903|gb|EDP24898.1| hypothetical protein COPEUT_02836 [Coprococcus eutactus ATCC 27759]
          Length = 506

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILS----CQAEKDDLIAELEVAKSLSDETR 239
            L + L  + A  ++  +    +  +  ++ +      Q +   +  E++      +   
Sbjct: 213 ALVVILGMVAAYFIAKLSVRDVNRTRGIIEGMKGGSLEQMDTSGMFGEMKALTKDINNIF 272

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +A+    ++  F++++SHEL+TP+ ++   SE +  ++  P   E Y+E++ DI +   
Sbjct: 273 NKAQLLEESRQEFVSNVSHELKTPITSMKVLSESLLTQSDVP--AEMYREFMEDIVQEID 330

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
               +I+++L L + + G   L++ ++ + + +   +  L+  A +++I++  +    + 
Sbjct: 331 REAEIISDLLTLVKTDKGPDSLNKESVDMDEFMDLILKRLRPLADKRSIQLSYESFGEI- 389

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
               D+      I NL+ N +K+   GG + V++  +  +  YI + D+G GI E  I  
Sbjct: 390 HASIDKVKFTLAISNLIENGIKYNVDGGWIKVSLN-SDHKNFYIKVADSGVGIPEDCINH 448

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   A      G GLGL I ++I+  H G   + S+  +G      +P 
Sbjct: 449 IFERFYRVDKARSRDTGGTGLGLAITKNIIILHKGTINVYSEPGKGTTFTVRVPL 503


>gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
 gi|156109227|gb|EDO10972.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
          Length = 1341

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELA-DGADECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQAEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVSRIEPEQDKE 1056


>gi|254302065|ref|ZP_04969423.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322257|gb|EDK87507.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 623

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 10/260 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +     L  ++         +++ AE  N AK+ FLA +SHE+RTPL  I+G+S ++ 
Sbjct: 127 ELKELNKSLEDKVNERTRELSISKEIAESANKAKNEFLAKISHEMRTPLTPIIGYSRILA 186

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E   P + E     +  IH SG  LLN  NE+LD S+IE+G+ +L+    ++  + ++ 
Sbjct: 187 KEINDPSSKEK----LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRTLFQDI 242

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A+ KNI        +  S+++D+  + ++  N++ NA+K+T   G V   V +
Sbjct: 243 YHEHIDLAKSKNINFKIDYLHANVSIYSDKIKIYEIAKNIIHNALKYTEK-GFVLCDV-F 300

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 + ++ D+G GI+E  I  +  SF Q      S + G GLGL I + ++    G+
Sbjct: 301 VENNTLFFNVYDSGIGISEENIKNIFESFVQIG----SEQSGAGLGLSITKKLLEVLNGK 356

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + SK+  G      +P  
Sbjct: 357 IEVESKVGIGSTFKIQIPIE 376


>gi|152986976|ref|YP_001347701.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962134|gb|ABR84159.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 779

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 8/281 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +  AE     A L ++    +E R+ A     A++ FLA+MSHE+R
Sbjct: 245 RLTQYLEELESIVAARTAELKAANARLTLSNQELEEARQTALNMAQARASFLANMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     + P      ++ +   H SG+ L+ L+N++LDLS+ EAG+  L
Sbjct: 305 TPLNGLLGMLSLSLDGPLTP----EQRQQLSIAHDSGKVLVELLNDVLDLSKFEAGQLVL 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
            E    L  +V +   +L   A    +E+   +DP+L   +  D   +RQV+ NLLSNA+
Sbjct: 361 EEIPFDLGVLVEDTASLLSQNAAA-GVELTCLVDPALPAQLSGDPTRIRQVVSNLLSNAL 419

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT   GRV V V  T+     IS++D G GIA+  +  +   F Q    I     G GL
Sbjct: 420 KFT-RLGRVDVRVEATADG-VRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGL 477

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           GL + + +     G+ ++ S +  G      LP  +V    
Sbjct: 478 GLALTRKLCEAMHGELMVESTVGLGSLFSVNLPLAQVSPPA 518


>gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1118

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 9/237 (3%)

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NAI+GFS+++    +         + +  I+RS + L++L+N++LD ++++
Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDN----EQHKQLSTINRSAKSLMHLLNDVLDSAKLD 605

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
            G+ EL      L D +   I  L L+A+++ + +   I PS+++      + +RQV++N
Sbjct: 606 KGKLELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLIN 665

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NAVKFT   G+V V+V   +       I D G G+   ++  V  +F Q   ++   
Sbjct: 666 LIGNAVKFTCE-GKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRK 724

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             G GLG  I++ ++   GGQ    S L +G      +P       +     E   +
Sbjct: 725 YGGTGLGTTISKQLVELMGGQLEAESTLGQGSTFRFTIPLQPSSEPL---ETERADH 778


>gi|319442463|ref|ZP_07991619.1| two-component system sensor kinase [Corynebacterium variabile DSM
           44702]
          Length = 511

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 139/341 (40%), Gaps = 12/341 (3%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
                L +A     +S  ++          V++   +  ++   +  + L    A  ++ 
Sbjct: 166 VVVIALPMAGEYHIMSQLLVVLVTIGVIVLVLLVAGSLYLVRRALQPLYLVERTAGRIAK 225

Query: 200 FTYITYHLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                     S    +       + ++A+++ A   ++ + ++A E   A  RF+   SH
Sbjct: 226 GQLDERVPEWSPNTEVGRLSGALNRMLAQIQGAFIATNRSERQAREAESAMRRFIGDASH 285

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL ++ G++++ +       +       I  I      +  L+ ++L L R++ GR
Sbjct: 286 ELRTPLTSVRGYADLYKSGATQDADM-----VIDRISSEAGRMSLLVEDLLTLVRMDEGR 340

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             +    + L+D+    +   +     +++ +      S+     D   + QVI NL++N
Sbjct: 341 -PMRREPVDLLDLGIAAVENAKAGFPGRSVSLS-NQTRSIPVTIGDSDRLHQVIGNLMTN 398

Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           A++       V + +  +          + + D+G GI   ++P +   F +  ++   A
Sbjct: 399 ALRHGGADASVTLRLTQSDPGVQPATVGVDVIDDGAGIPAEDVPHLFERFYRADVSRSRA 458

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             G GLGL I +S++  HGG   + S+L EG      LP  
Sbjct: 459 SGGSGLGLSIVKSLVEAHGGTITVESELGEGTTFHVRLPAA 499


>gi|323529866|ref|YP_004232018.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1001]
 gi|323386868|gb|ADX58958.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1001]
          Length = 645

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 168/452 (37%), Gaps = 23/452 (5%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS---LIT 79
               P +   D +++  L+ +             +LVA         P+F          
Sbjct: 1   MRADPIQHAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYWPAIPSPPLFIACFGFYAAA 60

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
                A     ++       +     W     +  + +     L       +   +   +
Sbjct: 61  NCAGLALWICNRRY----PHLLSPRGWINLHALRGVLLYSAPGLAIWFAFQSPQSDLPLL 116

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +    + +A  +   + F L        F +  ++     +        LA +LA     
Sbjct: 117 HTVMLVTLAAGVFMSNGFDLLNFATAIPFLLFPSIVLHFGV-HTFDRTILATVLAFFFCA 175

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                    K   +++  + ++  L   L V        +  AEE +LAK+RF A+ SH+
Sbjct: 176 INVYALSYRKLFQQVVQARVDQQYLAESLAVQ-------KHVAEEASLAKTRFFAAASHD 228

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LR PL+AI   +  +      P  +    E+   I  + + L  L N++LDL+R+E+G  
Sbjct: 229 LRQPLHAIGLLAASLNEPAATPAQHAKTAEH---IVYNVEALNQLFNQVLDLARLESGVT 285

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++      L ++        + +A  K + +     P+   V  D   + +V+ NLLSNA
Sbjct: 286 QVIRLDFRLSELFERVGSQYRPQAAAKGLALRI--APTSMVVHDDPVLLERVLSNLLSNA 343

Query: 380 VKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           V++T   G + +         G YI ++D+G GI   E   +   F Q +   + A QG 
Sbjct: 344 VRYTEE-GAIWLGFRRAGRSTGGYIEVRDSGIGIPPEEHERIFEEFYQVANPQRDARQGH 402

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGLP  + ++   GG+  +RS    G     
Sbjct: 403 GLGLPTVKRLVGLLGGELQLRSAPGRGSVFRF 434


>gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 513

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 125/255 (49%), Gaps = 10/255 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 264 EDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTG---- 319

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E  +EY+  +  + + LL LI++ILDLS+IEAG  E + +   + D++      +Q +
Sbjct: 320 EEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEK 379

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401
               ++ I          +  D   + QVI+N  +NA+KFT   G + +           
Sbjct: 380 NTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPK-GSIQMGYRIDEAKDEI 438

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +I  V   F +      +  +G GLGL I + I+   GG     SK
Sbjct: 439 YFYVKDTGIGIPADKINEVFERFVKL----NTFAKGTGLGLAICRVIVERLGGTIGADSK 494

Query: 462 LREGVEVIAILPNTR 476
             EG      LP T+
Sbjct: 495 EGEGSCFWFRLPITQ 509


>gi|167630855|ref|YP_001681354.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167593595|gb|ABZ85343.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 558

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 137/335 (40%), Gaps = 26/335 (7%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------ 219
           +  P+  A++T          ++L      A      +   L   +      +       
Sbjct: 226 ALQPIRDAIATARTWVFGAGALTLLLSALVAYLLSKKVARPLTALHAAAEQMRRREFNHR 285

Query: 220 -------EKDDLIAELEVAKSLSDETRKRAEEEN-------LAKSRFLASMSHELRTPLN 265
                  E   L   L    S    + ++ E++N        +     A++SH+LRTPL 
Sbjct: 286 APVEGDDEIGRLGETLNSLSSELSISLRQLEDKNDQLARGMQSMRDLAANVSHDLRTPLF 345

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I G++E +  +       +  ++    I      +  L+ ++L L+++E+G +EL   A
Sbjct: 346 LIQGYAEALRDDM--AKTPDDRRQMAEIILEETDRMQRLVQDMLQLAQLESGYFELKREA 403

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIF---QKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           +    ++      L   A E+ I +       D +L ++ AD   + Q ++NL+ NA++ 
Sbjct: 404 VDPEALIYGVARKLSGAADERQIRLICLAYPGDAALPAIHADPDRLTQALINLVDNALRH 463

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GG V + +   + +    S+ D+GPG+AE ++  +   F +G  +      G GLGL
Sbjct: 464 TPAGGEVVLGLTAQA-QSVRFSVDDSGPGLAEADLDRIWERFYRGEKSRSRKTPGTGLGL 522

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            I ++I+ +HGG     ++   G      +P    
Sbjct: 523 SIVKAIVESHGGSVGAENRTGGGASFFFTIPIKPA 557


>gi|289168018|ref|YP_003446287.1| histidine kinase [Streptococcus mitis B6]
 gi|288907585|emb|CBJ22422.1| histidine kinase [Streptococcus mitis B6]
          Length = 449

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|27365955|ref|NP_761483.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362104|gb|AAO11010.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 762

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 142/340 (41%), Gaps = 18/340 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            ++  AV       + +    + +S ++  ++ A            +     K+  +I  
Sbjct: 151 AIVLIAVLEIILVALFSYFLGSYLSQNLYQLTRAAERVANDGPGFQLQ---LKAKDEIGK 207

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A  D +   L  +    ++ R +AE  N +KSRFLASMSHE+RTP+N +LG   ++  
Sbjct: 208 VAAAFDSMSHNLATSYQELEQARTQAELANESKSRFLASMSHEIRTPMNGVLGLLGILGE 267

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +        +  +     SG+ LL++IN+ILD SR+EA    L      L   V E +
Sbjct: 268 TKLDNH----QQNLVHTAKESGELLLSIINDILDFSRMEANTLILYPRPFELKSCVEEIV 323

Query: 337 IMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394
              +  A+ K + +     D     V  D    RQV+LNLL NAVKFT   G V + V  
Sbjct: 324 NSFEPLAKTKGLYLSLTFNDECDYVVVGDSNRYRQVLLNLLGNAVKFTQK-GSVSLHVTT 382

Query: 395 WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              G   YI   I D G GIA   +  +   F           +G GLGL I + +    
Sbjct: 383 QNEGDKLYIRCEINDTGIGIAPDAMAILFEEFTMVDQGYSRTREGSGLGLAICKRLAQLM 442

Query: 453 GGQFLIRSKLREGVE--VIAILPNTR----VLNFIPEDNH 486
            G+  + S++ +G        +P            P+++ 
Sbjct: 443 EGEINVESEVGKGSCFVFSVEMPLAEHDTVTQQAQPDNDS 482


>gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 949

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 453 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 508

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 509 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 568

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 569 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 626

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 627 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 686

Query: 469 IAILPN 474
              +P 
Sbjct: 687 AIRIPL 692


>gi|126738010|ref|ZP_01753731.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. SK209-2-6]
 gi|126720507|gb|EBA17212.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. SK209-2-6]
          Length = 633

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 174/439 (39%), Gaps = 34/439 (7%)

Query: 43  ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102
           +++ + S ++ L   + A+IG    +  I  + S+  +   + +L L +           
Sbjct: 22  QTVRQTSRVVVLLGAIWASIGFLLQEPAISILASIAAVGSASVSLLLQRGY--------- 72

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
               +    +     GL   ++ +    T  P        A LL          F L   
Sbjct: 73  ----QNLARLAWFGSGL---VVVVGACFTLHPASNVELMFAALL----GGPFMAFSLRRE 121

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                  V+       ++   +        +       +Y++  L  +   IL    E  
Sbjct: 122 -RSLILLVLAMNVAGWLLVRALGHDYFGPPIVGEEISQSYLSAGLLGTIFAILIF--EMW 178

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +          +   + N AKS FL+++SHE+RTP+N I+G  E++E    G  
Sbjct: 179 SFSHLADRYGEDLRRAHEEESKANQAKSEFLSAISHEIRTPMNGIIGMVEILE----GTE 234

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   +  +  I  S   L+ +I+EILD++R      EL+   + L+ ++   +  L+  
Sbjct: 235 LDPGQRRSLQTIRDSSNSLMWIIDEILDVTRSGPSSVELAIEPMRLLPLLENAVSTLRPY 294

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-----GRVHVTVGWT 396
           AQ+ N++    I P L   +  D   +RQ++LNL+ NA+K++        G+V + V   
Sbjct: 295 AQQLNVQFSFSIKPDLPETIMCDAGRLRQILLNLMGNAIKYSETDPERGVGQVSLRVQSR 354

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   ++DNG GI       +    G       +  E+G G GL + + ++A+ GG+
Sbjct: 355 EPGWVEFLVEDNGAGIEPELQQRLFAQDGTVEPVGYRRNEKGKGFGLTVVRQLVAHMGGE 414

Query: 456 FLIRSKLREGVEVIAILPN 474
             ++S++  G      LP 
Sbjct: 415 TDLKSEVGRGSLFTVRLPA 433


>gi|187922640|ref|YP_001894282.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
 gi|187713834|gb|ACD15058.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
          Length = 1480

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 9/252 (3%)

Query: 226  AELEVAKS-LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A LE A+S      R  AE  + AK  F A MSHE+RTP+N +LG  EV+E   +    N
Sbjct: 810  ASLEHARSDELARARDLAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----N 865

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +G IH S   LL +++++LD S+IEAGR  +   +I L ++V   + +L  RA 
Sbjct: 866  ADQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDLRELVDNAVGLLAGRAH 925

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            EK +++   I P ++ ++  D   +RQ++ NLL NA+KFT  G   V V+V       Q 
Sbjct: 926  EKGLKVRVDIGPDVAATLRGDSVRLRQILFNLLGNAIKFTPQGEVDVCVSVVAEGDGIQT 985

Query: 403  IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +   ++D G GIA      +   F Q   +      G GLGL I + ++    G   +RS
Sbjct: 986  LEMVVEDTGIGIAPEVQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIDLMNGSLTLRS 1045

Query: 461  KLREGVEVIAIL 472
            +   G  +   L
Sbjct: 1046 EPGSGTCMTVRL 1057


>gi|52143444|ref|YP_083385.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976913|gb|AAU18463.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 453

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 148 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 207

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 208 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 263

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 264 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 321

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 322 IWQLTPNAEEKKMQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 379

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 380 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHAT----GAGLGLAIVKKMVELHGGT 434

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 435 INIISKEGIGTTILIKLPL 453


>gi|228900581|ref|ZP_04064803.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
 gi|228859064|gb|EEN03502.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
          Length = 351

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALS----ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +++     S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYIATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHVTA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRICDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 297 FYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346


>gi|150010055|ref|YP_001304798.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938479|gb|ABR45176.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 6/271 (2%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             Q  + +L  +++    L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E 
Sbjct: 807  YQLRQAELECKIQERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLER 866

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +   ++    KE +  I R+   L+  +NE+LDLS +  G          L   + +  
Sbjct: 867  HSGSEVSCGD-KEILRTISRNTNRLIWHVNELLDLSVLTRGVPSPHIVCADLSRFLEDIS 925

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                  A    I     I P +S  + D+  + QV+ NLLSNA K+T  GG V  +    
Sbjct: 926  ETFIPLADSYKIAFTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSASLE 985

Query: 397  ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               S     + I D+G GI    +P +   + +G+       +  G+GL   + ++  H 
Sbjct: 986  QSSSDAVMTLRITDSGIGIPPESLPYIFDRYYKGASIAFRRSESSGIGLAYTKELLELHK 1045

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  S+L +G      LP +      PE+
Sbjct: 1046 ATIQCESELGKGSVFTVALPISE--EAYPEE 1074


>gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
 gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
          Length = 930

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPL  I+G  ++++ + +     E     +  ++ S   LL +I++I
Sbjct: 449 KSMFLATVSHELRTPLYGIIGNLDLLQTKAL----PEGVDRLVNAMNNSSGLLLKIISDI 504

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IE+ + ++     S ++++            +K + ++  I+ ++   +  D   
Sbjct: 505 LDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRLGLYCFIEQNVPERISGDPVR 564

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV+ NLL+NA+KFT   G + + V    G     S++D G GI E EI  +   F Q 
Sbjct: 565 LQQVLSNLLNNAIKFTDT-GCIILQVTAR-GSYLEFSVRDTGVGIPEKEISRLFDPFFQV 622

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              ++   QG GLGL I + ++    G   + S+   G      +P       +P+ + 
Sbjct: 623 GTGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSMFSIRIPLFDAQYPVPQPSD 681


>gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
 gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
          Length = 1347

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 14/258 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
           + AK+ F A++SHE RTPL  +LG  E ++  +T+     E + + +  +HR+   LL L
Sbjct: 367 DRAKTSFFANVSHEFRTPLTLVLGPLEDLLADQTL----PEAHIDQLTVMHRNALRLLKL 422

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +N +LD SR+E+GR         L D         +   +   + +     P  + V+ D
Sbjct: 423 VNTVLDFSRLESGRLAAHYQPTDLADYTARLASTFRSATERVGLRLAVDCPPLPAPVFVD 482

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
                +++LNL++NAVKFT   G V V +         + + D G GIA  E+P V   F
Sbjct: 483 RDMWEKIVLNLVANAVKFTFD-GEVRVRIRAV-NGAARLEVADTGVGIAPEELPHVFKRF 540

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRV 477
            +         +G G+GL + + ++  HGG+  +RS +  G             LP  RV
Sbjct: 541 HRVPGVRSRTHEGTGIGLALVRELVEMHGGRAEVRSVVDGGSLFTVTVPFGSAHLPADRV 600

Query: 478 LNFIPEDNHESTQYKCYA 495
               P+   E  Q + +A
Sbjct: 601 AADAPDAPPELGQARLFA 618


>gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353]
          Length = 449

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F++++SHELRTPL ++  + E ++    G L+     +++         ++ ++
Sbjct: 206 ERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFVKVSLNETNRMMRMV 262

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVW 362
            ++L LSRI+     L     +    +   +      + + + K  EI +    +   V 
Sbjct: 263 TDLLSLSRIDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPILVE 322

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N+++NA+K++  GG + V++  T  +   +SI D G GI + ++P +  
Sbjct: 323 IDTNKLTQVIDNIMNNAIKYSPDGGTITVSIKTTDEQ-LILSIADEGLGIPKQDLPKIFD 381

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   A+ G GLGL IA+ I+  H G    +S+   G     +LP
Sbjct: 382 RFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|319955615|ref|YP_004166882.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
 gi|319424275|gb|ADV51384.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
          Length = 498

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 11/333 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           I A  +F +        + + + L   A+       I+L  +     +    IT  +   
Sbjct: 170 ILAGKDFQVVSDNLFGQYFMKLGLGAIALTMFFAALIALLSIWFLTKNLLL-ITKTVRSF 228

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS------RFLASMSHELRTPL 264
               L  + E  D      +A S ++      +  +  KS        +A++SH+LRTPL
Sbjct: 229 QEGDLDARIENPDASDIAILANSFNEMADTIVDNMDKMKSVDLLRRELIANVSHDLRTPL 288

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
             + G+ E ++++      N+  KEY+   H +   L  LIN++ + S++EA +    + 
Sbjct: 289 AILKGYVETLQMKNETLSENDK-KEYLQITHDNIDKLSKLINQLFEYSKLEAEQVSPIKE 347

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             S+ ++  + I   ++ A +KNI +          V+AD   + + + NL+ NA+K+T 
Sbjct: 348 PFSITELSHDLIAKFKVLADKKNISLKLNNPEDNCLVFADVSLVERALQNLIENALKYTE 407

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V +++    G+   I+I D G GIA  E+P +   + Q   +    +QG GLGL I
Sbjct: 408 DNGTVTLSL-LKKGKNIEINISDTGTGIAVSELPYIFDRYKQVDKST--KKQGYGLGLAI 464

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            + IM  H     + SK +EG   I  LP  +V
Sbjct: 465 VKKIMDLHDTTITVLSKPKEGSSFIFNLPAYQV 497


>gi|313639666|gb|EFS04457.1| sensor protein kinase WalK [Listeria seeligeri FSL S4-171]
          Length = 610

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I    +  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDXXXMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++ T+  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKYED-EIEVSIADEGLGVPDEDLATIFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|325289943|ref|YP_004266124.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965344|gb|ADY56123.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 464

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 152/334 (45%), Gaps = 11/334 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I  ++  +++         +   + +++    I    ++ I LA  +   L   T     
Sbjct: 142 IVGALRFIASLSTVDQDIQNTAKIFISIGLLVIFIAGLISIFLANTIIVPLKEVTKAAQE 201

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   N K  S +  +D++    +    ++DE  K+       K+ F++S+SHELRTPL +
Sbjct: 202 IAAGNFKARSRKTHEDEIGKLSDTLNYMADEIVKK----EQLKNDFISSVSHELRTPLTS 257

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G++  ++ E       +  K+ +  I +  + L +++ E+LD S+  +GR +L    I
Sbjct: 258 IMGWAITLQNEQF--QQKDMLKDGLNIIAKESERLTHMVEELLDFSKFVSGRIKLHNEPI 315

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            ++ ++      L  RA  +NI         L  + +D   ++Q+ +N+L NA  FT  G
Sbjct: 316 HIVHLMEHIHKQLTPRAVRENINFSLCCPEDLPCLVSDINRLKQLFINILDNAFNFTPAG 375

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + +       +    +I D+G GI+  E+P V   F +G  +        G+GL I +
Sbjct: 376 GSIMLKAE-NFDKEIRFTISDSGCGISTEELPMVKEKFYKGKSSRSKN----GIGLSICE 430

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            I+    GQ  I S+L +G  V   LP   VLN 
Sbjct: 431 EIVVLMKGQLEINSELDQGTTVRITLPQGEVLNE 464


>gi|312968949|ref|ZP_07783156.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75]
 gi|312286351|gb|EFR14264.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75]
          Length = 900

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ N AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKANQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|302338340|ref|YP_003803546.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301635525|gb|ADK80952.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 475

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 136/258 (52%), Gaps = 9/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++      A++     ++ AEE   A++ FLA+MSHE RTP+N+ILG + + +  +    
Sbjct: 122 EMALYKHHAEAELKRAKREAEEGLRARNEFLANMSHEFRTPINSILGMATLAKERS---- 177

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           ++    EY+  +  SG+ LL++++ +LD ++IE+ R +L  S +++  +V++       +
Sbjct: 178 DSSEVGEYLDLLIESGKGLLDMVSSVLDYAKIESDRLKLVMSNLNVSSMVKKIRERFAYQ 237

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGW---TS 397
             + +++    + P +  + W DE+   Q+ILNL+SNA+KFT+ G   V ++ G     +
Sbjct: 238 ISQSDVDFSITVAPGVPKLLWCDEEKYYQIILNLVSNALKFTSRGEVSVTISAGEKIDQA 297

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G    + + D G GIA+ +   +  +F Q   +      G GLGL I +  +   GG   
Sbjct: 298 GGSLLLKVVDTGVGIAKDQQDHIFRAFTQVDGSATRTFGGTGLGLTIVKQFVDQVGGSIE 357

Query: 458 IRSKLREGVEVIAILPNT 475
           + S   +G EV+  LP  
Sbjct: 358 LTSDTGKGTEVVVNLPVR 375


>gi|307153403|ref|YP_003888787.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306983631|gb|ADN15512.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 556

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 27/257 (10%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     K  F+A +SHELRTPL +I G   ++          +  K+ +         L+
Sbjct: 297 ELMEQMKKNFIALVSHELRTPLTSIHGSLGLLAAGIYDK-APDKMKKMLQIAATQTNRLV 355

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N+IL L R+++ RY+LS+   ++  ++ + I  +   A++ +I     +      VW
Sbjct: 356 ALVNDILSLERMDSSRYKLSKQTCNVKTLIEQSIDAMLGLAEQNSIIFKTDVAN--LKVW 413

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------------- 400
           A+   + QV++NLL+NA+KF+     + ++                              
Sbjct: 414 ANADAIIQVLINLLNNAIKFSPPNTTIVISAELFEASKSQTIKVPKACLSSTCDCSGSFY 473

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 I+D G GI   ++ T+   F Q   +    + G GLGL I  SI+  H G+  +
Sbjct: 474 PYVLFKIEDQGRGIPPDKLETIFEPFLQIDSSDSREKGGTGLGLAICHSIIKQHHGEIWV 533

Query: 459 RSKLREGVEVIAILPNT 475
            S L +G      LP +
Sbjct: 534 TSILGQGSIFYFTLPLS 550


>gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis YPIII]
 gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 957

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 461 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 516

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 517 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 576

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 577 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 634

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 635 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 694

Query: 469 IAILPN 474
              +P 
Sbjct: 695 AIRIPL 700


>gi|226225128|ref|YP_002759235.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254854408|ref|ZP_05243756.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|255519926|ref|ZP_05387163.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300766081|ref|ZP_07076049.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|225877590|emb|CAS06304.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607808|gb|EEW20416.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300513227|gb|EFK40306.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 459

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHL-YEKATYVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 KVKLPK 458


>gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 443

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTP+ ++   +E ++   M   + E   +++  I      +  L++E+
Sbjct: 223 RRDFVANISHELRTPIASLKLLAETLKEGAMA--DQEVAADFLNRISVEADKMGQLVDEL 280

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            +LSRIE+G   L +  +    ++   +  LQ +A    + +       L +V AD   +
Sbjct: 281 GELSRIESGAAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRI 340

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++NL  NA+KFT  GGR+ +T G +      I + D G GI   ++P +   F +  
Sbjct: 341 EQVLMNLTHNAIKFTPAGGRITLTAGISEKG-IEIKVTDTGAGITADDLPRIFERFYKAD 399

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            A      G GLGL IA+ I+  HGG+    S   +G  +   LP 
Sbjct: 400 KARSG--GGTGLGLAIAKHIVHAHGGEIRAESSPGQGTTISFTLPK 443


>gi|134287658|ref|YP_001109824.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134132308|gb|ABO60043.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1140

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 167/382 (43%), Gaps = 8/382 (2%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
            A      L  ++      P  L +   A+L++A+     S   L +A   +        
Sbjct: 552 FASQAARALHRVLPGARLGPAALRLVHYASLVLAMLAVLSSVLYLIWAQSATSMRAAGPS 611

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKS 233
              A+    +       ++    +++  +     +   +    Q E   L I   +   +
Sbjct: 612 IAHALSGSFLNIFLALSLVGCIAAWWFVLERENRRVTQEESQRQTELLMLEIDAHQKTDA 671

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                   AE  N AKSR+++ +SHELRTPLN+ILG+++++                +  
Sbjct: 672 ALKRATAAAESANQAKSRYVSGLSHELRTPLNSILGYAQLLLQ--AKEELTPMRYNAVRT 729

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           IHRSG+HLL L++ +LD++RIEAG+ +L+ + +SL D V     ML+ +A EK +    +
Sbjct: 730 IHRSGEHLLALVDGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQ 789

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
               L  +V  D+K M Q++ NL+ NA++FT   G + + V           + D GPGI
Sbjct: 790 TVGRLPATVRTDQKCMSQILTNLIGNAIRFTPS-GTITLRVSHVLD-TLKFEVVDTGPGI 847

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              E+  +   F +G  A      G GLGL I + +    GG   + S++  G   +  L
Sbjct: 848 PPAELERLFLPFERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFVVRL 906

Query: 473 PNTRVLNFIPEDNHESTQYKCY 494
                ++   E + E    + Y
Sbjct: 907 -FAPAVDAAAETHAELASIRGY 927


>gi|86751073|ref|YP_487569.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574101|gb|ABD08658.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1158

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      R  AE+   AK+ FLA+MSHE+RTPLN I+G++++            T +  +
Sbjct: 640 EDELKAARASAEQAGAAKADFLANMSHEIRTPLNGIIGYADLALE---DQTLVPTTRRQV 696

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  +   L  +I++ILD S+IEA   +L    + L +++  C+ ++Q +A+EK +++ 
Sbjct: 697 ERIFEASDSLRVIIDDILDFSKIEACGLKLESKPLYLTELIDNCVSIIQPKAEEKGLKLL 756

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDN 408
                + + +  D   +RQV+LNL++NAVKFT+ G   + V+    +       I++ D 
Sbjct: 757 ATARDTPAVLMGDAARLRQVLLNLMNNAVKFTSAGSVELIVSCVSRADPMVRLRIAVVDT 816

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ +   +   F Q    I     G GLGL I+Q I+     +  I S    G   
Sbjct: 817 GIGISKVDQQGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMQSELKIDSDQGRGSTF 876

Query: 469 I--AILPNTRVLN 479
                LP    ++
Sbjct: 877 YFEVELPIAERID 889


>gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase
           [Desulfotalea psychrophila LSv54]
 gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho
           family) [Desulfotalea psychrophila LSv54]
          Length = 602

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E        F+A++SHELRTP+ AI G+ E +    +     E  + ++  + R   
Sbjct: 368 RRLESVRR---DFVANVSHELRTPITAIRGYVETLLDGALD--QKEDARRFLAIVLRQSS 422

Query: 300 HLLNLINEILDLSRIE--AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            L ++IN++L LSRIE  +    +      +  +VR  +   Q+ A++K I +       
Sbjct: 423 RLSDIINDLLALSRIELDSSTDNIELEEQHICSVVRAALQTCQIDAEQKGIILQLHCPED 482

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGE 416
           +  V  +   + Q ++NL+ NAV+++     + V V     G+   IS+ D+G GI    
Sbjct: 483 I-RVPLNPHLIEQALVNLIVNAVRYSPEKSEIRVEVLACEEGQEVSISVADDGCGIGAEH 541

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P V   F +   A      G GLGL I + I+  H G+  + S+   G E    LP  
Sbjct: 542 LPRVFERFYRSDKARSRELGGTGLGLAIVKHIVQAHNGRVAVNSEEGVGTEFSFFLPIK 600


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1296

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 220  EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
            E+  L AE E     +++ R+ AE  N  K  FLA + HELRTPLN I+G+++++    +
Sbjct: 1036 ERKQLEAEREQLLERAEQAREAAEAANRTKDEFLAILGHELRTPLNPIIGWTQMLRRGKV 1095

Query: 280  GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            GP   + + + +  I R+ +    LI+++LD+SRI  G   ++   I+L  IV   +  +
Sbjct: 1096 GP---DKHDQALEIIERNARLQTQLIDDLLDVSRIMRGSLRIAPQPITLAAIVVCALEAV 1152

Query: 340  QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +  A++K +++F+++  +   + AD   ++QV+ NLL+NAVKFT  GG+V V +  + G 
Sbjct: 1153 RGLAEQKQVQLFEQLRTTAP-LSADPTRLQQVVWNLLTNAVKFTPAGGQVQVRLE-SGGG 1210

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++I D G GI    +P +   F Q        ++G+GLGL I + I+  HGG     
Sbjct: 1211 MARLTISDTGVGIPAEFLPHLFERFRQADTKSTREQKGLGLGLFIVRHIVEAHGGTVQAE 1270

Query: 460  SK-LREGVEVIAILPN 474
            S+   +G     +LP 
Sbjct: 1271 SEGEGKGAAFTVVLPL 1286



 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 231 AKSLSDETR-KRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           A + + E   +RAE     + AK+ F +++SHE RTPL+ +LG  E       G   +  
Sbjct: 351 ANARAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLE---DVLAGDGISAP 407

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E +    R+G+ LL L+N +LD SRIEAGR + +     L  +  + + + +   ++ 
Sbjct: 408 TREQLTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKA 467

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            + +     P   +V+ D     +++LNLLSNA KFT   G++ V +   +     + ++
Sbjct: 468 GLRLVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLR-GQIAVRLRQQT-GEVCLELE 525

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA  E+P +   F + +     + +G G+GL +   ++  HGG+  ++S    G 
Sbjct: 526 DTGVGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGS 585

Query: 467 EVIAILP 473
                LP
Sbjct: 586 TFTVRLP 592


>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 600

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTP+N ++G ++++    +    +E    Y+  I  SG+ LL +IN++
Sbjct: 209 KSAFLANMSHEIRTPMNGVVGMADLMAEHDL----DEEMASYVDTIRSSGRALLTIINDV 264

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IEA + EL      L   + + I ++    +EK ++I   +D  L      D   
Sbjct: 265 LDYSKIEAAKLELHLEPFDLEQTILDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVR 324

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           +RQ++ NL+ NAVKFTA  G + V V     G  + +  +++++D G GI       V  
Sbjct: 325 VRQILTNLIGNAVKFTAK-GHILVRVIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFG 383

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FI 481
            F Q       + +G GLGL I + +++   G+  + S+   G      L    V    +
Sbjct: 384 EFNQVEDERNRSFEGTGLGLAITRQLVSLMLGEVWVESEEGIGSCFGFALSLPVVAEASL 443

Query: 482 PED 484
           P+ 
Sbjct: 444 PDA 446


>gi|331010550|gb|EGH90606.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 638

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 124 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 183

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 184 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 239

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT +G  ++ +    +     
Sbjct: 240 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 299

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 300 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 359

Query: 459 RSKLREGVEVIAIL 472
            S   +G  +   L
Sbjct: 360 DSVPGQGTRISMNL 373


>gi|325288449|ref|YP_004264630.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963850|gb|ADY54629.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 416

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F+A  SHELRTPL  I    E+++      +  E  ++++G I    + +  L++
Sbjct: 184 RRQQEFVADASHELRTPLTIIRTNLELVQGNPQETI--ENQEKWLGYIESETKRMSTLVD 241

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R ++    L ++  SL   +RE    L+  A +KNI +    D S+ +   DE 
Sbjct: 242 DLLFLARADSDALILEKTTFSLDQALRETTAPLESMANKKNIALITSYD-SIPAFAGDEN 300

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            ++Q+ + LL NA+K T+ GG V + +   +   + I + D G GI    +  +   F +
Sbjct: 301 KIKQLTVILLDNAIKHTSPGGTVSIDLRKKASHAELI-VSDTGEGIPREHLEKIFERFYR 359

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              +   A+ G GLGL IA+ I  +H G   + S L +G      LP  ++
Sbjct: 360 VDKSRSRAQGGTGLGLSIAEWITRSHNGTIKVSSDLSKGTIFTVDLPLNQI 410


>gi|270292777|ref|ZP_06198988.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
 gi|270278756|gb|EFA24602.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
          Length = 449

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L +    ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALYDPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATTRLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ V++  T  +   +SIKD G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSIKDQGLGIPKQDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|261252536|ref|ZP_05945109.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio orientalis CIP 102891]
 gi|260935927|gb|EEX91916.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio orientalis CIP 102891]
          Length = 1198

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                      +S            D I+E +  +S     R+ A++  +A+ +FLA+MS
Sbjct: 609 LRHISRQRKAIRSLTANTEYVLTVLDDISEQKQRESELITAREEAQQAVIAREQFLATMS 668

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTP+ AI G  E+  L        E     +    +S +HL  L++E+LD S++ A 
Sbjct: 669 HELRTPIAAIQGSLELASLREKEGRTAE----LLVQAQKSTRHLNVLVDEVLDFSKLNAQ 724

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLL 376
           ++ L+ + ++L++++ E I   +  AQ K +    +I+P +      DE  + Q++ NLL
Sbjct: 725 QFILNPTKVNLLELLCESIRSYEQAAQAKGLVYQVEINPLVCRFAQMDEVRLVQILNNLL 784

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+KFT+  G V + V  T      ++I D+G G++  +I  VL  F Q    +     
Sbjct: 785 SNAIKFTSS-GFVKIEVTSTQA-ELKLTISDSGIGMSSEQIDKVLKPFTQADAGVTRQYG 842

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           G GLGL I   ++    G   + S    G      +P T V   
Sbjct: 843 GSGLGLSIVDKLVTCMDGNMSVESIPNVGSAFYLTIPLTCVEQE 886


>gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 594

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 131/323 (40%), Gaps = 7/323 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L          L+     +  +   +  + V           +              ++
Sbjct: 169 TLVAMRWLRRNPLADSFDTMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSL 228

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +    A++   +      +   D  R RA+  N  K   LA++SHELRTPLN I G+ E
Sbjct: 229 TLRETGAQRRRDLRAQRSLQGARD-ARDRADTSNRLKDELLATVSHELRTPLNVIYGWIE 287

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+        ++    + I  I RS + L  ++ +ILD S +  G+  +    + ++ + 
Sbjct: 288 VLRNTR----DDALQLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLF 343

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + +   Q  A    I +  +   S   V  D + +RQ++ NL+SNA+KFT  GG V VT
Sbjct: 344 SDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVT 403

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +         + + D G GI    IP V   F +   +  S  +G+GLGL I + I   H
Sbjct: 404 LSRDDAHAVLV-VADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLH 462

Query: 453 GGQFLIRSK-LREGVEVIAILPN 474
           GGQ  + S     G      LP 
Sbjct: 463 GGQVRVESAGRNRGATFTVTLPA 485


>gi|188583112|ref|YP_001926557.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179346610|gb|ACB82022.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 920

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 148/332 (44%), Gaps = 10/332 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +  L   V      +   +     +       + A       +        L   N + 
Sbjct: 181 VSMGLQRGVTRPLAALARTM-DGVRLGHDYTKRAEAAGSREVGALAASFNDLLQAVNERD 239

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            +       L  E+ +      E ++ A+E N AKS FLA+MSHE+RTP+N +L  +E++
Sbjct: 240 RAIARHNAGLEEEIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELL 299

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +        + Y   I RSGQ LL +IN+ILD +++E+GR E+    +S  D+   
Sbjct: 300 ASAEL----PPRQQRYAQVIARSGQSLLAIINDILDFAKVESGRLEVERIPLSPRDVADT 355

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            + +   RA    +++  +ID  +   +  D   + QV+ N +SNA+KFTA  G V V +
Sbjct: 356 VVTLFAERAASAGLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTAA-GHVLVRM 414

Query: 394 GWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
              +   G    I++ D G GI E  +  + T+F Q   +I     G GLGL IA+ ++A
Sbjct: 415 TMEASASGPVLCIAVSDTGIGIPEDRLAGIFTAFTQADQSIARRFGGTGLGLSIAERLIA 474

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             GG   + S+L  G    A +P        P
Sbjct: 475 AMGGCVGVESRLGAGSTFWARIPADGADPAAP 506


>gi|119898108|ref|YP_933321.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119670521|emb|CAL94434.1| conserved hypothetical two-component hybrid sensor and regulator
           [Azoarcus sp. BH72]
          Length = 1014

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 4/259 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+     +LE   +     R  AE  N AK  FLA +SHELR+PLNA+ G+S+V+    
Sbjct: 602 TERKRAQQDLEQLLAAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSR 661

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +          I R+  H   LI+++LD SRI +G+ +L+   ++L+D+V   + +
Sbjct: 662 --EPDAALVARAAEAIKRNIDHQTRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDL 719

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
               AQ+K+IE+    D     V  D   ++QV+ NLLSNA+KFT  GGRV V +  T  
Sbjct: 720 STDSAQDKHIELRFACDVEELYVDGDFDRLQQVLSNLLSNAIKFTPEGGRVQVRLLCT-E 778

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           R   +S+ DNG GI    +P V   F Q   ++     G+G+GL + ++++  HGG    
Sbjct: 779 RSAELSVTDNGIGIEPDFLPHVFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQA 838

Query: 459 RSK-LREGVEVIAILPNTR 476
            S    +G     ILP  R
Sbjct: 839 SSAGSNQGAMFTVILPRAR 857


>gi|37913120|gb|AAR05382.1| probable two-component sensor [Aeromonas hydrophila]
          Length = 1252

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 131/268 (48%), Gaps = 16/268 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           ++E +          + A+E N AKS FLA+MSHE+RTP+NAI+G  E+ +    +    
Sbjct: 682 VSERQRLLDELALASQDAQEANRAKSTFLATMSHEIRTPMNAIIGLLELTLRRGRLH--- 738

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E  K  +   H S   LL+LI +ILD+S+IE+GR EL      ++ +    + +    A
Sbjct: 739 -EEDKSSLTIAHGSANDLLSLIGDILDISKIESGRLELMPEPHDIVALTGAVVTVFNALA 797

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
           ++KN+++    D     V  D    +Q++ NL+SNA+K+T   G V V +   +  G   
Sbjct: 798 RQKNLQLEFVAD-DPRWVQIDGLCYKQILSNLVSNAIKYTEQ-GSVQVELQSKTSDGWCT 855

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            Y+ I+D G GIA  E   +   FGQ S        G GLGL IA+S+  + GG   + S
Sbjct: 856 LYLVIRDTGIGIAPAEQARLFQPFGQASQPEHIQRSGTGLGLMIARSLCESMGGSLQLES 915

Query: 461 KLREGVEVIAI--LPNTRVLNFIPEDNH 486
           +   G  +     LP        PE   
Sbjct: 916 EPGRGTCISIEMKLPLA----VAPEQES 939


>gi|307316767|ref|ZP_07596209.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897389|gb|EFN28133.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 1126

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 182/446 (40%), Gaps = 30/446 (6%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           I  +   +V+ +  W+T+   +        W   +    +            D+     Y
Sbjct: 465 IALVTAFVVSPLIAWWTEGKFYLARKPRKSWLAESEITCSIC---EHPFEPEDMAWCPAY 521

Query: 105 VWRIWLLVGQI------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
              I  L   +             +      +            L        + A+   
Sbjct: 522 AAPICSLCCSLDSRCHDMCKPKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISI 581

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                ++   +           +     ++ ++    A +      F+         +  
Sbjct: 582 TGIG-VILAMIAHQTTAASPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAEE 640

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +           IA  +   +   + ++RAE  N AKSR++  +SHELRTPLNA+LG+++
Sbjct: 641 ESSRQNTALLKEIAAHKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQ 700

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P      +  I  I RS  HL  LI+ +LD+S+IEAG+ ++  + I++ D +
Sbjct: 701 ILERDETIP---PPRQGAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFL 757

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + M + +AQ K I        SL   V  D+K +RQ+++NLLSNA+KFT   GR+  
Sbjct: 758 DQIVDMFRPQAQAKGIAFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTER-GRIRF 816

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V +   +    +I+D+G GI+E ++P +   F +G         G+GLGL I + +   
Sbjct: 817 DVAYR-SQVASFTIEDSGRGISEKDLPRIFEPFQRGEAEY--RMPGLGLGLTITRLLTQT 873

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRV 477
            GG+  + S+  +G      L  + V
Sbjct: 874 LGGEISVTSEKDKGTAFKVRLMLSAV 899


>gi|229159730|ref|ZP_04287739.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
 gi|228623755|gb|EEK80572.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
          Length = 461

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +  + + L   +      +    +E+++++      SL  V  DE+ 
Sbjct: 291 LFLLAQMEKHSFSIVVTEVQLHSFLTRITEKVNAMYKERHVKVSLTCPSSLL-VKLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QVI+N+LSNA + +     ++++V     +   I+IKD G GI   ++  +   F + 
Sbjct: 350 FEQVIVNILSNAYRHSKEHSHINISVT-EETKRISITIKDEGEGIPPEDLSHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVSSEVNHGSCFIISLP 454


>gi|329850050|ref|ZP_08264896.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328841961|gb|EGF91531.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 520

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 12/320 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLIAELEVA 231
                 + +     I+L  +   A  +        +   +  I++    K+ L+ E    
Sbjct: 73  PPPAVILTTGGDERIALEALEKGAADYAVKDVNQTYLDLLPAIMTSAFTKERLLRENAQQ 132

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +      ++RAE  + AKSRFLA+MSHE+RTP+N + G + V+    +    N+  K+ +
Sbjct: 133 RDELQHAKERAEAASQAKSRFLATMSHEIRTPMNVVTGLASVLAKSPL----NDEQKKIV 188

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  +   LL LIN++LD+SRIE    +L +    +  I+R+  +M +     K + + 
Sbjct: 189 DTLRTNADLLLKLINDLLDISRIEDDHIDLEQLPFEVSAILRDIRVMFEQDIARKGLTLQ 248

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407
            +     + +  D   ++QV++NL+SNA+KFT   G + +    T         ++S+ D
Sbjct: 249 LEDKTHGTVLQGDRTRLQQVLMNLVSNALKFTDS-GEITLRAEVTPDGDDHTILHMSVSD 307

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GI   ++P +   F Q    I     G GLGL IA+S++   GG   + S+  EG  
Sbjct: 308 SGIGIEREKLPLIFEKFTQADETITRRYGGSGLGLSIARSLVELMGGDIRVESRPGEGSV 367

Query: 468 VIAI--LPNTRVLNFIPEDN 485
                 LP       + E  
Sbjct: 368 FHVTLRLPRGFAREAVTEPE 387


>gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 854

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 6/236 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E     K+ F++++SHELRTPL +I G   +I    +G     + ++ +   + +
Sbjct: 488 ERKRIE---QMKNDFVSTVSHELRTPLTSISGALGLIVGGALGK-APPSMQQMLEIAYSN 543

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L +LIN++LD+ +I AG+        SL ++++E +   Q    +  +    +    
Sbjct: 544 SLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHATD 603

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           +  VW D   ++QV+ N LSNA KFT  GG + V      G+   IS+ D GPGI E   
Sbjct: 604 V-RVWVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLR-GQRVRISVTDQGPGIPEAFR 661

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             V   F Q   +    + G GLGL I + ++   GG      +  +G      LP
Sbjct: 662 SRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 717


>gi|327190925|gb|EGE57979.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 1127

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 169/342 (49%), Gaps = 10/342 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
            +++      +      ++      +  T  +++  +L +     + + +  + Y+  H 
Sbjct: 574 GIAVVLALAAIGAILAMIAHQVAAASPETAEVVNRTILVVFFVFSVISGVVCWFYVLAHD 633

Query: 208 FKSNVKILSCQAEKDDL--IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   +  S +     L  IA  +   +     ++ AE  N AKSR++  +SHELRTPLN
Sbjct: 634 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLN 693

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG+++++E +   P      +  I  I RS +HL  LI+ +LD+S+IEAGR ++  + 
Sbjct: 694 AVLGYAQILERDDTIPAP---RQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNE 750

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
           I++ D + + + M + +AQ K +    +  P+L   V  DEK +RQ+++NLLSNA+KFT 
Sbjct: 751 INIQDFLDQIVEMFRPQAQAKGLAFAHQRSPALPQFVRTDEKRLRQILVNLLSNAIKFTD 810

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V   VG+   +    ++ D G GI E ++P +   F +G         G+GLGL I
Sbjct: 811 E-GSVTFDVGYR-SQVATFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTI 868

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPED 484
            + +    GG+  + S   EG      L  + V+     P++
Sbjct: 869 TRLLTNTLGGEISVSSVRDEGSTFRVRLMLSAVMRAAAPPQE 910


>gi|196231316|ref|ZP_03130175.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224652|gb|EDY19163.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 895

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 156/295 (52%), Gaps = 8/295 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
            A +++    ++  + +      + +   D+L  ++       +   +R +E +  KS F
Sbjct: 599 FAGSMADLVALSLEVEQRRQAETALRETLDNLEHKVTERTRDLEAANERLQELDRLKSEF 658

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHELRTPLN+++GF+ ++  E  GP+N+E  K+ +G +H S +HLLNLIN++LDLS
Sbjct: 659 LATMSHELRTPLNSVIGFTGILRQELAGPMNDE-QKKQLGMVHSSARHLLNLINDLLDLS 717

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R+E+G+ EL      + D+V+E    L  + Q+K + +   +D     +  D     Q++
Sbjct: 718 RVESGKMELFLEDFVVADLVKEIDQCLAPQVQQKKLRLETSLDQPTLRIRTDRNKSFQIL 777

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNL +NAVKFTA+ GRV + V   + +     + D G GI    +P +  +F Q   + +
Sbjct: 778 LNLTNNAVKFTAV-GRVTLKVTSDADQ-VQFEVADTGIGIKPESLPHLFEAFRQVDGSAR 835

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
              +G GLGL +++ +    GG   + S+   G     +LP        P  NH+
Sbjct: 836 RVYEGTGLGLYLSKQLAKMLGGNITVESEFGIGSRFTLVLP-----QNTPPANHK 885


>gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis PB1/+]
 gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 957

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 461 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 516

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 517 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 576

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 577 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 634

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 635 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 694

Query: 469 IAILPN 474
              +P 
Sbjct: 695 AIRIPL 700


>gi|332185226|ref|ZP_08386975.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014950|gb|EGI57006.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 413

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F+A+ SHELRTPL +ILGF E +  E     + E    ++  +    + + 
Sbjct: 168 DAAERMRVDFVANASHELRTPLASILGFIETLGDEAGD--DPEIRARFLKVMFDEARRMQ 225

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ +++ LSRIEA +Y     ++ L D+V +           +  +I   +   L  + 
Sbjct: 226 RLVEDLISLSRIEADKYRQPAQSMDLADLVNDVWEEFLDSGSPRAEDIACDLAEDLPPIA 285

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + Q++ NL+ NA+K+  +   + V++    G    +S+ D G GIA G IP +  
Sbjct: 286 GDRAQLSQMLHNLIGNAMKYGRVETPIRVSLNR-DGEMLRLSVADRGEGIAAGHIPRLTE 344

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            F +       +  G GLGL I + I+  H G+  I S++  G  V   LP 
Sbjct: 345 RFYRVDSGRSRSIGGTGLGLAIVKHIVERHRGRLEITSEVGMGTTVTVRLPP 396


>gi|229541696|ref|ZP_04430756.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229326116|gb|EEN91791.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 420

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI---HRSGQHLLNLI 305
           +++F++  SHE+RTPL  I    E++  +      NET ++ + DI       + L  L+
Sbjct: 187 QTQFVSDASHEIRTPLAVIQSRVELLLRK-----PNETVRDVLQDISTVLNECRRLTKLV 241

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           + +L L+R ++ + E+      L +++RE +      A  +   +  K  P   +   D 
Sbjct: 242 SNLLTLARSDSDKIEIERKPFYLDELLREIMDHFSELAAIQGKTLILKSAP-PVTFSGDR 300

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + Q+I+ LL NA+K+T  GG++ +   + S     IS++DNG G+ E +   +   F 
Sbjct: 301 DRIHQLIVILLDNAMKYTGDGGKIELAC-FESKNHVGISVQDNGIGLKEEDREKIFDRFF 359

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           Q S +     + +GLGL IA+ I+  H G+  + SKL EG       P  +  +  
Sbjct: 360 QVSKSRT-KTESLGLGLSIAKWIVEKHSGKIRVDSKLGEGTTFTITFPKKKRKDAQ 414


>gi|325922143|ref|ZP_08183933.1| Signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547378|gb|EGD18442.1| Signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 724

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 169/447 (37%), Gaps = 54/447 (12%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWF---TQNPIFPMWSLITLAVYAANLSLGKK 92
              T H ++L R    + +  L ++ +G  +     + +   W    L            
Sbjct: 15  RADTEHAQNLVR----IIITTLFISYLGWRYQHTHGDTLVATWL--ILVGELVVSLGLMV 68

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            +    ++          L+G +    C   +  ++     P          + I   + 
Sbjct: 69  AILLRPQVSHTRR-----LIGMLLDYTCTGAIMAIQ---GEPASPLYAVCMWVTIGNGLR 120

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
             SN++       S   +   L +    +   L   L   L     +F  +   + +   
Sbjct: 121 YGSNYLRAATAMGSLCFLSAILISPYWKANPYLSWGLLLGLIAVPLYFDSLLRAMTR--- 177

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
                                      + A   N AKSRFLA+MSHE RTPLN + G +E
Sbjct: 178 -------------------------AVREARHANQAKSRFLANMSHEFRTPLNGLSGMTE 212

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+    +    +   KE +  I  S + LL+L+ E+LD+S IEAG+  + +   SL +++
Sbjct: 213 VLATTRL----DAEQKECVNTIQASARSLLSLVEEVLDISAIEAGKIRIDQRDFSLRELL 268

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               ++LQ +A+ + +    ++   +  +   D   +RQV+LN++ NAVKFT   G V +
Sbjct: 269 GAIGLILQPQARARGLHYSTQVAADVPDLLKGDTGHLRQVLLNIVGNAVKFTEQ-GHVLL 327

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +   S          ++D G G+       +  +F Q  + +    +G GLG  IA+ +
Sbjct: 328 RITRVSAGSALRLRFDVEDTGIGVPLDMRSRLFDAFEQADVGLSRRYEGTGLGTTIAKGL 387

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475
           +   GG    +     G      LP  
Sbjct: 388 VEAMGGSIGFKENQPSGSVFWFELPMA 414


>gi|255010784|ref|ZP_05282910.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 790

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL   +    + ++ AE   L K  FLA+MSHE+RTPLNAI+GF+ ++  ET G L+ 
Sbjct: 540 VQELVRREDELIKAKEIAENAEL-KQSFLANMSHEIRTPLNAIVGFTNILVDETAGELDE 598

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K+ IG ++ + + LL LI+++LD+SR+++   E       L  IV E     Q+   
Sbjct: 599 EEKKDMIGIVNHNSELLLKLISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVIIH 658

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
              +E   K+D S    V  D+  + QVI N LSNA KFTA  G + +      GR +  
Sbjct: 659 PP-VEFRLKMDDSWTVYVAVDKLRLIQVISNFLSNANKFTAE-GSITLGCEVDPGRAEVG 716

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI  G +  +   F +         QG GLGL I + I     G+  ++S++
Sbjct: 717 IYVEDTGKGIDTGHLNAIFDRFYKADE----FAQGTGLGLSICKVIATRLSGRVEVQSQV 772

Query: 463 REGVEVIAILPNTR 476
            +G     +LP  R
Sbjct: 773 GKGSRFTLVLPLMR 786


>gi|237747908|ref|ZP_04578388.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379270|gb|EEO29361.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 538

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           + +   +E  + A   N AK+ FL+SMSH++RTP+NAILG + +     M   N    ++
Sbjct: 1   MQQKALEEACQAARMANNAKANFLSSMSHDIRTPMNAILGMTAIA---DMHAENPARVRD 57

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  S ++LL+LINEILD+SRIE G+  + E+   L ++V   + + +    +KN E
Sbjct: 58  CLKKITTSSKYLLSLINEILDMSRIENGKLGICENNFDLGELVENTLELCRPLLMQKNHE 117

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403
           I   I   +   +  D   +++V LN+LSNA+K+T  GG +  TV               
Sbjct: 118 IRIAIGQKIHESLVGDADRLQKVFLNILSNAIKYTPDGGLIEWTVNERPLELMDFAMLEF 177

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             +DNG G++E  +  +   F +      +  QG GLG+ IA +I+    G   + S L 
Sbjct: 178 VFRDNGIGMSEEFVEHIYEPFVRAEDTRINDVQGTGLGMAIAGNIVHMMNGTITVDSVLG 237

Query: 464 EGVEVIAILPNT 475
           EG      +P  
Sbjct: 238 EGSCFRVNVPLK 249


>gi|169335858|ref|ZP_02863051.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258596|gb|EDS72562.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
          Length = 968

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 144/294 (48%), Gaps = 14/294 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
             +++  ++  +S     D   +E   ++ L  +    A   N AKS FL+ MSH++RTP
Sbjct: 413 AENIYNEDIIGISIVKSLDKQRSERIRSEQLLKDALNAARTANEAKSDFLSRMSHDIRTP 472

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+G S +     +      +  +    I  S ++LL+LIN+ILD+S+IE+G+  L++
Sbjct: 473 LNAIIGMSTI---GKLKIEKPNSVLDCFSKIDSSSKYLLSLINDILDMSKIESGKVTLND 529

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
                 +++ E   ++  +A EK IE     D ++   + AD   + Q+ +NLLSN++K+
Sbjct: 530 ERFDFSEMIHEINEIIYDQAVEKGIEYKVYSDINMDKYYIADRLKLNQIFMNLLSNSLKY 589

Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
            + G  +H +                ++D+G G+++G +  +   F Q +  +     G 
Sbjct: 590 FSKGDFIHFSFKEVKRERGVSLIEFIVEDSGCGMSKGFLDKLFLPFEQENAGVARNNVGT 649

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           GLGL I ++I+    G   + S+   G + I  LP   +      ++ E  +Y+
Sbjct: 650 GLGLTIVKNIVDIMEGNIEVISEKGRGSKFIVTLPLGII------ESEEEAEYR 697


>gi|170738932|ref|YP_001767587.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193206|gb|ACA15153.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 1113

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 10/358 (2%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           + + A +++AL  +A     + YA      P   A+  QA+     +   +A +      
Sbjct: 564 LGRYAGIMLALCAAAGLILGVVYAEAAHRAPAHGAVLAQAL---EAVFFVMAVIFGVVAW 620

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
            F         +  +     A     IA  ++  +   + ++ AE  NLAKSR++  +SH
Sbjct: 621 LFVLAQESRRVAQEETARQTALHRAEIAAHKITDAKLQKAKEAAEAANLAKSRYVVGISH 680

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLNA+LG+++++E     P      +  I  I RS +HL  LI+ +LD+SR+EAGR
Sbjct: 681 ELRTPLNAVLGYAQLLEN---DPAIPPQRQSGIRVIRRSAEHLSGLIDGLLDISRMEAGR 737

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLS 377
            +L  +A+ L D + + + M + +A+   +E        L ++ A DEK +RQ++LNL+S
Sbjct: 738 LQLHRNAVRLPDFLDQIVDMCRPQAEAAGLEFRFTRPAILPALVATDEKRLRQILLNLIS 797

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFTA  G V + + +   +    ++ D G GI E ++P +   F +G++   ++  G
Sbjct: 798 NAIKFTAR-GHVGLDLTYR-NQIAEFAVTDTGSGIPEADLPRIFEPFVRGTLPAATSTPG 855

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            GLGL IA  +    GG+  + S L  G      L  + +         E+   + YA
Sbjct: 856 TGLGLTIAHLLAQVMGGEITVASALGRGSTFRLRLMLSSLAESGRAAPAEAP-VRGYA 912


>gi|144900520|emb|CAM77384.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 849

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 14/270 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            AE  +A     + + +AE  N AKS FLA+M+HE+RTP+N I+   +++      PL  
Sbjct: 464 AAERAIAMDQLTQAKVQAETANQAKSSFLAAMTHEIRTPMNGIM---DMLRDLHQSPLAA 520

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +  I  +G  LL +++++LD SRIEAGR  L   A+ L  ++   I+    +A+
Sbjct: 521 D-QEHAVATIRETGLSLLKIVDDVLDFSRIEAGRLRLENVALDLPHLLEGVIMAETPQAR 579

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399
           +K + +    DP++ + +  D   +RQ++ NL+ NAVKFT   G+V V        T+  
Sbjct: 580 DKGLRLVHFHDPAIPAGLHGDPTRLRQILYNLVGNAVKFTPT-GQVSVFTQHLGSATARP 638

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + + D G GIAE    ++   F Q  I+      G GLGL I   ++   GG+  + 
Sbjct: 639 TIRLIVADTGIGIAEHAQQSLFQPFTQADISTPRMFGGTGLGLSITHRLVHMMGGEINVF 698

Query: 460 SKLREGVEVIAILPN----TRVLNFIPEDN 485
           S+  +G   +  LP           +PE +
Sbjct: 699 SQPGQGSTFVVDLPLGQGDANTAPPVPEVD 728


>gi|66045353|ref|YP_235194.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256060|gb|AAY37156.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1206

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 691 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 750

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 751 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVEAVLRVFDGLA 806

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++E+  ++D  + + V  D    +Q++ NL+SNA+KFT +G    V +   S     
Sbjct: 807 RQKDLELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLLAAESPDPQL 866

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 867 LHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 926

Query: 459 RSKLREGVEVIAIL 472
            S    G  +   L
Sbjct: 927 DSTPGHGTRISMNL 940


>gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 764

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 141/325 (43%), Gaps = 27/325 (8%)

Query: 171 VVALSTQAIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNVKILSCQAEKDD---- 223
           V  L        H L  SL+ +   +               ++ +       ++D     
Sbjct: 298 VAMLIAPRWRRRHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACVAL 357

Query: 224 ---LIAELEVAKSL---------SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
              L    E  +           + + R++A+  N  K   LA++SHELRTPLN I G+ 
Sbjct: 358 SLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWI 417

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ I
Sbjct: 418 EVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRI 473

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V +    L   AQ + +++          V  D + +RQV+ NLLSNA KFT  GGRV V
Sbjct: 474 VNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           ++  T      + + D G GI+   +P V  +F +   +  S+ +G+GLGL I + I   
Sbjct: 534 SLMRTDSHATLV-VADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAEL 592

Query: 452 HGGQFLIRSKLRE--GVEVIAILPN 474
           HGG+  + S   +  G      LP 
Sbjct: 593 HGGKVEVASA-GKRLGTTFTVTLPA 616


>gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 1563

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/266 (34%), Positives = 150/266 (56%), Gaps = 16/266 (6%)

Query: 222  DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
               I + + A+    + +++AE  +  KS FLA +SHE+RTPLNAI+GFSEV+  E  GP
Sbjct: 1307 LRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGP 1366

Query: 282  LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + N+ YK+Y+ DI  SG H+++LIN++LDLS+IEAG+ +L  SA+S  D++ EC+ ++Q 
Sbjct: 1367 IGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVSTNDVINECVALMQP 1426

Query: 342  RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            +A  + + I   +  S+  V AD + +RQ++LNLLSNA+K+   GG+V ++    S    
Sbjct: 1427 QANRERVIIRASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGGQVILSTALESNGEV 1486

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-------SAEQGVGLGLPIAQSIMANHGG 454
             + ++D G G+   ++   L  F Q   + +                    ++++  +  
Sbjct: 1487 ALRVRDTGTGMTSKQLAAALEPFRQLHTSSRGGGTGLGLPLT---------KALVEANRA 1537

Query: 455  QFLIRSKLREGVEVIAILPNTRVLNF 480
             F I S   +G  V  I P  RVL+ 
Sbjct: 1538 SFHIDSTPDQGTLVEIIFPTQRVLSE 1563


>gi|83310531|ref|YP_420795.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945372|dbj|BAE50236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 631

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 127/262 (48%), Gaps = 7/262 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E ++ + +  E R  AE+   AKS FLA M HE+RTPLN +LG + ++    +    +  
Sbjct: 128 ERKMGEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLETDL----DPR 183

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K +   +  SG+ LL L+N+ILD SR++A    L+     ++D V E  ++L  RA EK
Sbjct: 184 QKSFAETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLASRAAEK 243

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSGRGQYI 403
           ++ +  +    +  V   D   +RQ++ NL+ NA+KFT  GG  + V  +    G+    
Sbjct: 244 DLALSCRFGAGVRRVVSGDRLRLRQILFNLVGNAIKFTDRGGVEIGVEPLAVEQGQILRF 303

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD+G GIA      + T F QG         G GLGL I + +    GG     S   
Sbjct: 304 SVKDSGIGIAPEIGAQLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGVIGYDSLPD 363

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
            G      LP     + + E +
Sbjct: 364 RGSTFRVDLPLPPAESPLAEQS 385


>gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
          Length = 1196

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 14/254 (5%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY-- 290
           +   E ++ A+  + AK++FLA+MSHE+RTP+NAI+G  E+         ++E   ++  
Sbjct: 691 AQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLELAIKR-----SHENQFDFNS 745

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I   H S + LL LI +ILD+ +IEAG   L+ + I L   +   I + +  A EK + +
Sbjct: 746 IRVAHDSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTISSTIQIFEGIALEKKLPL 805

Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISI 405
               D  L   V  D   ++Q++ NL+SNA+KFT   G V V+              + +
Sbjct: 806 KLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFTNQ-GMVTVSAEQQLELNEQMYLLLKV 864

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI++ +   +   F Q      +   G GLGL I  S+    GG+  + S+  +G
Sbjct: 865 SDTGIGISKDDQQKLFRPFAQVQHGADNK-GGTGLGLAICSSLCDMMGGELRMISEPEQG 923

Query: 466 VEVIAILPNTRVLN 479
             +   LP   V +
Sbjct: 924 TTLSMRLPLYPVKD 937


>gi|225626825|ref|ZP_03784864.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|225618482|gb|EEH15525.1| sensor histidine kinase [Brucella ceti str. Cudo]
          Length = 451

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 60  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 116

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 117 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 176

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 177 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 236

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 237 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 294

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 295 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 354

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 355 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 414

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 415 LARHRGRLVVRSQLGEGSTFMVRLP 439


>gi|206978378|ref|ZP_03239250.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206743412|gb|EDZ54847.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 463

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E     +++    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKE---TTSSKQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EEHKSISIAIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
 gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
          Length = 1023

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE     +    K  ++ N  KSRFLA+MSHE+RTPLN I+GF+ ++E++    L    
Sbjct: 634 ELESRLRETAIAAKAEKDSNAEKSRFLATMSHEIRTPLNGIMGFARLLEMD----LPAGE 689

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            KE  G + +S + L  ++N+ILD S++E+G  +L +S   +  +++    + +L  + K
Sbjct: 690 LKEQAGYLVQSSETLSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCESK 749

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQ 401
            ++           ++  D   +RQ++ NLLSNA+KFT   G+V +TV  T    +    
Sbjct: 750 GVKFELNNKLGEHQIFSGDMGRLRQILQNLLSNAIKFT-SHGKVSLTVSNTQISPNEDLI 808

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              + D G GI + +   +   F Q     ++   G GLGL I +S++   GG+  + S+
Sbjct: 809 TFEVSDTGLGIPKEKQSLLFKPFSQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLESE 868

Query: 462 LREGVE--VIAILPNTRVLNF 480
             +G +      L     L+ 
Sbjct: 869 PGQGTQVMFSVTLKREHQLDS 889


>gi|145606116|ref|XP_001406723.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
 gi|145013842|gb|EDJ98483.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
          Length = 1994

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 17/246 (6%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +K RFL++MSHE+RTPL  I G    ++  T+     E  ++Y   IH S   
Sbjct: 1311 KLKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQETTL----TEEQRDYTNTIHTSANS 1366

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            L+ +IN+ILDLS+++AG  +L         ++     ++   A  K +E+   ++P +  
Sbjct: 1367 LIMIINDILDLSKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEVPA 1426

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIG------GRVHVTVGWTSGRGQ--YISIKDNGPG 411
             V  D+  +RQV+LN++ NA+KFT+ G          V              SI D G G
Sbjct: 1427 WVKGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCSVATVKENEIGEDEIMLEFSIIDTGRG 1486

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
              + E   +   F Q   +      G GLGL I++ ++  HGGQ    +   +G      
Sbjct: 1487 FTKDESELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGQMNGTATPGKGSTFTFT 1546

Query: 472  ----LP 473
                LP
Sbjct: 1547 AKFGLP 1552


>gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Microtus str. 91001]
 gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis IP 32953]
 gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pseudotuberculosis IP 32953]
          Length = 957

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 461 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 516

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 517 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 576

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 577 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 634

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 635 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 694

Query: 469 IAILPN 474
              +P 
Sbjct: 695 AIRIPL 700


>gi|163845709|ref|YP_001633753.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163666998|gb|ABY33364.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 350

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                I L  ++  +L      +  +              D+L A  E    +++     
Sbjct: 65  GLTTSILLVQVILRSLRSIARSSRRIAAGRYDERVTVPASDELRAVAESFNQMAE----A 120

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +   + +++HELRTPL  I G+ E +    +    +        D+ +  + L
Sbjct: 121 LEQIEQRRITMIGNVAHELRTPLAGIEGYLEGLIDGVLPNTADTFL-----DMKQEVRRL 175

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++  LSR+EAG+  L  +   + D++R  +  +Q +  +  +++    D     V
Sbjct: 176 RRLVDDLQTLSRVEAGQIALHFTTFDVNDVIRRVVAQIQPQVLDSCLQVQFAPDQQPILV 235

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            AD   + Q++LNLL NAV++T  GG + V     +   Q I ++D G GI+   +P + 
Sbjct: 236 HADADRVAQILLNLLGNAVRYTPEGGCITVRSELNNDNVQVI-VEDTGIGISAEHLPFIF 294

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475
             F +   +      G G+GL IA+ +    GG     S  + +G      LP  
Sbjct: 295 ERFYRADPSRARTSGGSGIGLTIARHLAWAMGGDISAASAGIGKGSTFTLTLPRA 349


>gi|147676371|ref|YP_001210586.1| membrane-associated sensory histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146272468|dbj|BAF58217.1| hypothetical membrane-associated sensory histidine kinase
           [Pelotomaculum thermopropionicum SI]
          Length = 478

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 15/336 (4%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             +  A +++     +L   + +     + A+    +  + V+  +LA +     +    
Sbjct: 154 IGITQAGTLTGPLKELLVRQLLVFLVLSLAAMFFGLLGFLPVIRRTLAPLSNMIDTAGQI 213

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD--ETRKRAEEENLAK-SRFLASMSHE 259
              +L K        Q E D L    E    + D  E   +AE E   +  RF+A  SHE
Sbjct: 214 DAGNLAKRFPTQ-QGQVEIDRLA---ESFNGMLDRLEASFKAERETKEQMRRFIADASHE 269

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL +I GF EV+          +  ++ +  +H   + L  L++++L L++++    
Sbjct: 270 LRTPLTSIHGFLEVLLRGA--ASQPDQLQKALKSMHSESERLTRLVHDLLLLAKLDR-TP 326

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++  +   L  ++ +    L++ A   N E+  +I+P +   + D   M+QVILNL  NA
Sbjct: 327 QVELAEGLLSTMILDMEPQLRILA--GNRELSLQIEPGVVCRY-DVNKMKQVILNLFHNA 383

Query: 380 VKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           V+ T   GG + +++      G  +S++DNGPGI E  +P +   F +  ++      G 
Sbjct: 384 VQHTDPEGGCIRLSLSRV-DGGVRLSVQDNGPGIGEEYLPHIFDRFYRIDVSRARKYGGS 442

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GLGL I ++I+  HGG   + SK  EG      LP 
Sbjct: 443 GLGLAITKAIVDIHGGVISVESKPGEGCTFHIWLPV 478


>gi|329890535|ref|ZP_08268878.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845836|gb|EGF95400.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 250

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 3/249 (1%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                ++  D  R  AE +NL K+RFLA MSHELRTPLNA++GFS+ +  E  GP+    
Sbjct: 1   MQHAREAELDAARAEAEAQNLGKTRFLAHMSHELRTPLNAVVGFSDAMRQELFGPV-PPR 59

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y +Y   IH +G HLL+LIN++LD+SRIEA RY+LS       + V   + +++++A +K
Sbjct: 60  YADYAASIHEAGGHLLDLINDVLDVSRIEADRYQLSLERFDAREPVLAALALVRIQADDK 119

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            +E+   + P   SV AD + ++Q+ LNLL+NAVKFT  GG V V+V   +     +++ 
Sbjct: 120 GVELAAVLPPEALSVRADRRALKQMALNLLANAVKFTPPGGTVTVSV-QAADDALEVTVA 178

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+  ++  +   + Q   A + A QG GLGL + +++   HGG   + S L  G 
Sbjct: 179 DTGVGISAEDLARLGRPYEQAGDAEQRA-QGSGLGLALVRALAGLHGGTLALDSALGVGT 237

Query: 467 EVIAILPNT 475
                LP  
Sbjct: 238 AATVRLPLE 246


>gi|330816277|ref|YP_004359982.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
 gi|327368670|gb|AEA60026.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
          Length = 437

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHEL+TPL  + GF E +      PL++E    Y+  + +    + 
Sbjct: 201 ERTDAMRRDFVANVSHELKTPLTVLSGFLETLREL---PLSDEERARYLDMMEQQAGRMR 257

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++ ++L L+++E      ++  + + D++   +  +       + EI  +ID +L SV 
Sbjct: 258 KIVTDLLVLAKLEGEGKPPTDKPVDMDDVLGH-LEDVAQTLSAGHHEISFEIDDTL-SVT 315

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             E  +   + NL++NAV++T  GG++ V      G     S+KD+G GI   ++P +  
Sbjct: 316 GAETEIFSALGNLVTNAVRYTPEGGKIRV-CWRRDGSQAVFSVKDSGFGIPAEDLPRLTE 374

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   +      G GLGL I + ++  H GQ LI+S+   G    A  P  R +   P
Sbjct: 375 RFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFPAQRTVVRRP 434

Query: 483 EDN 485
              
Sbjct: 435 RAA 437


>gi|293603145|ref|ZP_06685579.1| phosphate regulon sensor histidine kinase protein PhoR
           [Achromobacter piechaudii ATCC 43553]
 gi|292818539|gb|EFF77586.1| phosphate regulon sensor histidine kinase protein PhoR
           [Achromobacter piechaudii ATCC 43553]
          Length = 435

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 154/442 (34%), Gaps = 32/442 (7%)

Query: 52  LPLFVLLVANIGTWFTQNPI-FPMWSLITLAVYAANLSLGKKV--------MNSDIKIGE 102
               V L A I             W ++  A+ A  L    ++                 
Sbjct: 6   TLFLVALWAVIALLAQWLIGDPAGWIVLCTALAAMLLWRSWRLTLVSHWANHPDTSPPAS 65

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
           V  W   L                 E          +  +A  L   +++   +F + + 
Sbjct: 66  VGPWDDILAPLYRYTRA-----RARELTETRDTMQGMLAAAQALPDGAVTLNEDFQIDWC 120

Query: 163 VFLSFFPVVVALSTQAI-----MSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILS 216
             ++   + + L          +      +  A   A        +      +  +  L+
Sbjct: 121 NRMARQHLGLRLPADRGHNLLNLLRAPEFVEYAHRSAWPEPILVRLGQQGQERLMMMQLT 180

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A    L+   +V +    ET +R          F+A++SHELRTPL  + GF E +  
Sbjct: 181 AYASNQRLLITRDVTQIERLETTRR---------DFVANVSHELRTPLTVLAGFLETLRD 231

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                L  E   +YI  +H   Q +  ++ ++L LS +E+        AI++  ++++  
Sbjct: 232 MPADALPEEQRAQYIDMMHEQAQRMQAIVEDLLTLSTLESSPGS-DPRAINMSALLQKAR 290

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             ++  A      + Q        V   E  +   + NLL+NAV++T  GG + V     
Sbjct: 291 QQIE--ALSGGRHVLQWHIDDTLDVLGAETELTSALSNLLTNAVRYTPDGGTITVRWERE 348

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +  G   S++D G GI    +P +   F +       A  G GLGL I + I   H  + 
Sbjct: 349 ADGGARYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAVGGTGLGLAITKHIAMRHDAEL 408

Query: 457 LIRSKLREGVEVIAILPNTRVL 478
           LI S+  +G       P  R+ 
Sbjct: 409 LITSEPGKGSVFALRFPPERIA 430


>gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
 gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
          Length = 553

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 142/247 (57%), Gaps = 3/247 (1%)

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
               +   ++ R  AE++N  KSRFLA+MSHELRTPLNAI+GFS+++     GP+ +  Y
Sbjct: 293 QRAREHELEKARISAEQQNAGKSRFLANMSHELRTPLNAIMGFSDIMRQRLFGPMGD-RY 351

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            EY   IH SG HLL LIN++LD+S+IEA R+EL+       D V   + +++ +A+   
Sbjct: 352 GEYAELIHESGSHLLELINDVLDMSKIEAERFELAREDFDARDAVGAVLRLMRGQAERAG 411

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + +   + P      AD + ++Q+ LNL+SNA+KFT  GG V VT    +G    + + D
Sbjct: 412 VTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTPRGGTVTVTA-QGAGETLELIVAD 470

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           +G GIA  ++  +   F Q   A + A  G GLGL + ++  A HGG+  I S + EG  
Sbjct: 471 SGVGIAPADLERLGRPFEQAGDAQQRAA-GSGLGLSLVRAFAALHGGEMAIESGVGEGTT 529

Query: 468 VIAILPN 474
           V   +P 
Sbjct: 530 VTVRMPV 536


>gi|159026945|emb|CAO89196.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 665

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 9/235 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L++   +E++   +     L  
Sbjct: 417 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGEDLSDTEKREFLETANHETDRLTR 475

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R   +  A+ +  ++ + +   QL A++K +E+   I+ +L  +  
Sbjct: 476 LVNDVLDLSRLESSR-NYNLDALDIGQLIEQTLRTYQLNARDKGLELSSDIEANLLPILG 534

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEI 417
               + QV+ NL+ N++KFT  GG+V +     S           + + D G GI   + 
Sbjct: 535 HYDLLLQVLTNLVGNSLKFTPAGGKVVIRAYKISKDNPQETLKIRVEVSDTGIGIDAEDQ 594

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +   F +         +G GLGL I ++I+  H  Q  + S++  G      L
Sbjct: 595 IAIFDRFYRVEN-RVHTLEGTGLGLSIVKNIIEKHYSQIHLISEVGIGTTFWFDL 648


>gi|81325113|sp|Q9RDT3|WALK_STAAU RecName: Full=Sensor protein kinase walK
 gi|6689207|emb|CAB65401.1| VicK protein [Staphylococcus aureus]
          Length = 415

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       + E   +++       + ++
Sbjct: 177 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAW--KDEELAPQFLSVTREETERMI 234

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  I     + + I   ++ A++      + I        
Sbjct: 235 RLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDT--TFIRDIPKKTIFTE 292

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V          I IKDNG GI   ++  + 
Sbjct: 293 FDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIF 352

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 353 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIED 410


>gi|325921207|ref|ZP_08183071.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548314|gb|EGD19304.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 8/244 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++ AE+ +LAK+RFLA++ HE+RTP+  +LG SE++   ++        + Y   I R+G
Sbjct: 195 QELAEQGSLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDN----KQRSYTESIRRAG 250

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
            HLL L+N+ LDL+RIE+GR EL     S+  +V E   ++   AQE+ +    ++    
Sbjct: 251 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFSLEVGLLG 310

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416
             +   D   +RQ++LNLLSNA+KFT   G V + +      +G    + D GPGI   +
Sbjct: 311 DITASGDVTRIRQILLNLLSNAIKFTER-GVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 369

Query: 417 IPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F QG  A   S   G GLGL I Q +    GG   + S+L  G   +  LP  
Sbjct: 370 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELALAMGGHVEVISRLGAGTRFVVDLPLR 429

Query: 476 RVLN 479
            V +
Sbjct: 430 WVAS 433


>gi|320156468|ref|YP_004188847.1| signal transduction histidine kinase SypF [Vibrio vulnificus
           MO6-24/O]
 gi|319931780|gb|ADV86644.1| signal transduction histidine kinase SypF [Vibrio vulnificus
           MO6-24/O]
          Length = 762

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 142/340 (41%), Gaps = 18/340 (5%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
            ++  AV       + +    + +S ++  ++ A            +     K+  +I  
Sbjct: 151 AIVLIAVLEIILVALFSYFLGSYLSQNLYQLTRAAERVANDGPGFQLQ---LKAKDEIGK 207

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             A  D +   L  +    ++ R +AE  N +KSRFLASMSHE+RTP+N +LG   ++  
Sbjct: 208 VAAAFDSMSHNLATSYQELEQARTQAELANESKSRFLASMSHEIRTPMNGVLGLLGILGE 267

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +        +  +     SG+ LL++IN+ILD SR+EA    L      L   V E +
Sbjct: 268 TKLNNH----QQNLVHTAKESGELLLSIINDILDFSRMEANTLILYPRPFELKSCVEEIV 323

Query: 337 IMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394
              +  A+ K + +     D     V  D    RQV+LNLL NAVKFT   G V + V  
Sbjct: 324 NSFEPLAKTKGLYLSLTFNDECDYVVVGDSNRYRQVLLNLLGNAVKFTQK-GSVSLHVTT 382

Query: 395 WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
              G   YI   I D G GIA   +  +   F           +G GLGL I + +    
Sbjct: 383 QNEGDKLYIRCEINDTGIGIAPDAMAILFEEFTMVDQGYSRTREGSGLGLAICKRLAQLM 442

Query: 453 GGQFLIRSKLREGVE--VIAILPNTR----VLNFIPEDNH 486
            G+  + S++ +G        +P            P+++ 
Sbjct: 443 EGEINVESEVGKGSCFVFSVEMPLAEHDTVTQQAQPDNDS 482


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 24/266 (9%)

Query: 225 IAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTPLNAILGF 270
           ++E+       +ET  R  E N                KS FLA ++HELRTP+N ++G 
Sbjct: 246 LSEVHATHRALNETADRLRESNRQLDQALQQAQTAARAKSSFLAMITHELRTPMNGVIGM 305

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++    +     E  + +   I + G+  L+LIN++L+ S+IEAG+ EL      L  
Sbjct: 306 ASLLLETPL----TEEQRSFTNTIQQCGEAQLSLINDVLECSKIEAGKLELEHLDFYLRT 361

Query: 331 IVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            V + +     RAQ K +EI         +++  D   +RQV+ N + NA+KFT   G V
Sbjct: 362 TVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQVLTNFVGNAIKFTER-GEV 420

Query: 390 HVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            +                 + D+G GI+E     +  +F Q   +      G GLGL I+
Sbjct: 421 TLQAFLERDSPSEVIIKFEVTDSGIGISEDVQSRLFQAFTQADSSTTRKYGGTGLGLAIS 480

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471
           + ++   GGQ  +RS+  +G      
Sbjct: 481 KQLVELMGGQVGLRSQPGQGTTFWCT 506


>gi|113868998|ref|YP_727487.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113527774|emb|CAJ94119.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 572

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 171/439 (38%), Gaps = 22/439 (5%)

Query: 48  VSPILPLFVLLVANIGTWF-TQNPIFPMWSLITLAVYAANLSLGKKVMN---SDIKIGEV 103
            + +  + +  +  +G W          W  + L +    L           S  +    
Sbjct: 10  TAIVASVLLPALTTLGFWNDVSRAALLGWCAVMLLLTVGGLWFYVGYQRDHASMSRSAHT 69

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
             W   +       G+ W    L+   T +  + ++    TL + L+  A+S   +P  +
Sbjct: 70  RKWWNNMRAVAFLTGVTWGSSALLHLYTGSAVFSSVLYLLTLGV-LAGGAVSQAPVPSNL 128

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
             +  P++V     A  +     + +  +L       +    HL  + V+ +  + +   
Sbjct: 129 VYAGVPILVPNILMAEFAFPGHGVYVQVLLVIYGLMLSRHALHLQVTLVRAIQLEGDSRR 188

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  + +       E ++RA   +  KSRFLA+ SH+LR P++A++   E +         
Sbjct: 189 LAKQFQ-------EEKERALHASEEKSRFLAAASHDLRQPVHALVMLVEALRARNQSSAL 241

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +      +  +    Q +  L   +LDLS++E  +   +     L  ++R+ +      A
Sbjct: 242 HP----LVEQVAAGTQTIDLLFRSLLDLSKLEGRKVLPTLEPCELGALIRDVMSQFAADA 297

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +E  + +  ++   L +  A+   +R+ + NL+ NA+++T  GG   +       +   +
Sbjct: 298 RESGLTLTPRVPDELYA-MAEPVLLRRALFNLVQNALRYTQRGG--VLVTARQRRKHVRL 354

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+    +P + + + Q     +   QG+GLGL I +  +    G + +RS   
Sbjct: 355 EVWDTGAGVTPEHLPDIFSPYYQVHNPQRDPSQGLGLGLAIFKECVRLMRGTYGVRSVPG 414

Query: 464 EGVEVIAIL---PNTRVLN 479
           +G      L   P   V +
Sbjct: 415 KGSVFWFALATVPAETVAS 433


>gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 580

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 163/385 (42%), Gaps = 19/385 (4%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
              +     I           L        +      +       P  L +      L  
Sbjct: 185 WRIRETRLAIAEETTRRVEALLSSQPGLTLVLDASGRVYGAYGSAPPALLV----DALFE 240

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
             + A  +      +  +F   +     Q   +          ++             + 
Sbjct: 241 QGLIAAVHAPDRRPILDAFDAALKGQPAQISFAPRQALDRRVTLIVRRADDAAGHPRLIA 300

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           ++         E     A  E                N  K+RFLA+MSHELRTPLNA+L
Sbjct: 301 QAFDGTRQFATEIGLEAARAEAEAQ------------NAGKTRFLANMSHELRTPLNAVL 348

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS+V+     GPL+   Y EY  +IH +G HLL+LI ++LD+S+IEA RYELS      
Sbjct: 349 GFSDVMRQRLFGPLS-PKYAEYADNIHEAGSHLLDLIGDVLDVSKIEAERYELSREPFDA 407

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++V   + +++  A +  + +   +     +V AD + ++Q+ LNLLSNA+KFT  GG 
Sbjct: 408 REVVSAAVALVRGTATDGGVTLASLLPDDPLAVEADRRALKQITLNLLSNAIKFTPSGGS 467

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V +T+  T G    + + D G GIA  ++  +   F Q   A + A +G GLGL + +++
Sbjct: 468 VTLTLE-TIGPYLEMVVADTGVGIAARDLKRLGRPFEQAGEADQRA-KGTGLGLSLVRAL 525

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
              HGG+  I S L EG  V   LP
Sbjct: 526 AELHGGRMSIESTLGEGTAVTVRLP 550


>gi|238926848|ref|ZP_04658608.1| integral membrane sensor signal transduction histidine kinase
           [Selenomonas flueggei ATCC 43531]
 gi|238885380|gb|EEQ49018.1| integral membrane sensor signal transduction histidine kinase
           [Selenomonas flueggei ATCC 43531]
          Length = 426

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    + +F A  SHELRTPL  +L  ++++  +    + +   K+ I D+    + +  
Sbjct: 189 EAYERQRQFAADASHELRTPLAVVLASADLLRSDP--TITSPFLKQVIEDVRDEVKKMTK 246

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L ++R +    +L    + +  + R+ + M++  A++K+I I  ++ PS   ++A
Sbjct: 247 LVSDLLTVARTDGKALQLKPVRMDIAAVARQTVRMMRAFAEKKDIAIK-EMLPSHMEIYA 305

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE+ +RQ+IL L+ NAVK+T   G + V++  +     ++S+ D+G GIA  +   +   
Sbjct: 306 DEQKIRQLILILIDNAVKYTLDHGHIMVSIVLSENGRIHLSVADSGIGIAAEDQGRIFDR 365

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   A      G GLGL IA+ I+  H G   + S++ +G      L
Sbjct: 366 FYRVDKARSRRMGGNGLGLAIAREIVEAHHGTITLESEVGKGTIFHVYL 414


>gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1205

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                 K+ F++ +SHELRTPL AI G   ++    + P +    +  I     S + L+ 
Sbjct: 961  AIERMKNEFISVVSHELRTPLTAIHGALNLLSTGLVAPES-PRGQHVIKIAAESTERLVR 1019

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+N+IL+L R+E GR +L +  ++   ++R     +Q+ A    I++     P      A
Sbjct: 1020 LVNDILELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEIL--PQDIEFEA 1077

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--------GWTSGRGQYISIKDNGPGIAEG 415
            D   M QV+ NL+SNA+KF+  G  + ++V        G T        ++D G GI   
Sbjct: 1078 DGDRMIQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQGRGIPLE 1137

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            ++ ++   F Q   +    + G GLGL I +SI+  HGG   + S L +       +P  
Sbjct: 1138 KMESIFERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFYFSIPVK 1197


>gi|149277545|ref|ZP_01883686.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149231778|gb|EDM37156.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 656

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AE    +K+ FLA MSHE+RTPLN+++GFSE +    +    ++T +E +  I  S + L
Sbjct: 278 AEHNAASKTSFLAGMSHEIRTPLNSVIGFSEQLGQSKL----DDTQREQLDAITNSSKIL 333

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI--FQKIDPSLS 359
           L+++N++LD S+ E G+     +     DI+ E    L ++A  K I I     I P L 
Sbjct: 334 LDIVNQVLDFSKFETGKMVFERAPFIPQDILEEVFSTLSIQAVNKGISIAKSFDISPEL- 392

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
           SV  D   ++QV++NLL NA+KFT   G V +    +S +       + +KD G GI++ 
Sbjct: 393 SVKGDALRLKQVLINLLGNAIKFTKE-GEVTIKATVSSDKKDQIRLIVWVKDTGVGISKE 451

Query: 416 EIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +  +   F Q + A K A Q G GLGL I++ I+   GG   + S+  +G      LP 
Sbjct: 452 NVNMIFGEFSQVASAQKDASQKGTGLGLAISKKIIEQQGGYIRVTSEEGKGSVFKFSLPM 511

Query: 475 T 475
            
Sbjct: 512 E 512


>gi|153831971|ref|ZP_01984638.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
 gi|148871969|gb|EDL70792.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
          Length = 566

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 7/241 (2%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E RKRAE    A   F+A ++HELRTPLN +LG +++++   +    ++  ++Y+ ++  
Sbjct: 193 ELRKRAEASEKATKEFVAMINHELRTPLNGVLGSADLLDKTVL----DDEQQQYLSNLIH 248

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG  L  +IN++LD S++ AG  E+ +   +  D+      +   +A EK I        
Sbjct: 249 SGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRIHFSIDKKL 308

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
            +   +  D + + Q+++NL+ NA+KFT +GG V + V W         ++D G GI   
Sbjct: 309 GIPEFLIGDFERITQILVNLIGNAIKFTNLGG-VVLRVEW-HNGYANFEVEDTGIGIPLE 366

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
               +   F Q   + K + +G GLGL I ++++   GG     S  R+G      +P  
Sbjct: 367 AQKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMGGDISFASVPRQGTIFKLKIPLK 426

Query: 476 R 476
           +
Sbjct: 427 Q 427


>gi|240949675|ref|ZP_04754010.1| sensor histidine kinase [Actinobacillus minor NM305]
 gi|240295933|gb|EER46609.1| sensor histidine kinase [Actinobacillus minor NM305]
          Length = 616

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFK 209
           SA+  F++     +     +  L    ++   +L   L G+++      FF  I   L K
Sbjct: 25  SAILGFVVLCIFAILVQIFLDYLFLGKVLVHDILRSVLFGLISAPFVIYFFNVIVEKLEK 84

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S VK+     E   L  +  +         KR E+ +  K++ +A++SHELRTPLN I+G
Sbjct: 85  SRVKLEQSIYELGTLREQDFILN-------KRLEKNSQDKTKLMATISHELRTPLNGIIG 137

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S ++    +        +EY+  I+ S   L ++ ++I+DL +I++ R EL    +  I
Sbjct: 138 LSRILLEGEL----EPKQREYLKTINISAVSLGHIFSDIIDLEKIDSKRIELFNKPVEFI 193

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++ +      L A +K I+   +    L   +  D   + QVI NLLSNAVKFT   G 
Sbjct: 194 QLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWNLLSNAVKFTPEKGD 253

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + + +   S       + D+G GIA+ E   +   F Q   +  +  QG G+GL +++ I
Sbjct: 254 ITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNKAQGSGIGLAVSKHI 313

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
               GG   + S+L EG      +
Sbjct: 314 AQLMGGDLTVESQLGEGAAFTLTI 337


>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
 gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
          Length = 869

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  EE   AK +F  ++SHELRTPL  I    E I             +  +  + R+ 
Sbjct: 350 RRLEEEATNAKLQFFTNISHELRTPLTLIADPVEHIID---DNNLTRQQRNMLLIVRRNV 406

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +I+ G+  L+ S   L   +R+ + +    A +K I +      S 
Sbjct: 407 NVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELH-AASP 465

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            S+ AD   + ++  NLLSNA+K+T  GGR+  +   T G   +I + D G G+   E  
Sbjct: 466 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSA-VTEGDFVHIGVTDTGIGMTRDEAA 524

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            V   F Q        + G G+GL I +S    H G   + S+   G      LP  
Sbjct: 525 HVFERFYQV---RHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLPLK 578


>gi|300118415|ref|ZP_07056161.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298724200|gb|EFI64896.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 263

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  +  F++++SHE ++PL++I GFS+ ++ E    ++ E    Y+  I    + + +
Sbjct: 39  ELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTE---KMSVEERNHYLQIIEGESKRMSS 95

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L  ++L L+ ++     L     +L   +++ I ML+ + +EK+I +   +     ++  
Sbjct: 96  LCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPD--ITIKG 153

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  + QV  N+ +N++KF+   G +   V         ISI DNG G+ + E+  +   
Sbjct: 154 DENLLHQVWSNIFTNSIKFSNDDGTIEFFVEELES-SVIISISDNGIGMEKEEMDRIFDR 212

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   A     +G GLGL I Q I+  H G   + S   EG  V   LP 
Sbjct: 213 FYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 263


>gi|253572645|ref|ZP_04850046.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837777|gb|EES65867.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 539

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++   ++ +K+AE+    KS FL++MSHE+RTPLNA+ GFS ++  E+   ++NET ++
Sbjct: 293 QSQQEQEKAKKQAEKSIHTKSLFLSNMSHEIRTPLNALSGFSAILTEES---IDNETKQQ 349

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               I ++ + LL LIN+++DLS +E G+ +   +   ++ + R  I M++ + ++   E
Sbjct: 350 CNDIIQQNSELLLKLINDVIDLSSLEIGKMQFKFNECDIVALCRNVIDMVE-KIKQTQAE 408

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +      S   +  D   ++QV++NLL NA KFTA  G + + +   +      S+ D G
Sbjct: 409 VRFSTSLSSLKLTTDSARLQQVLINLLINATKFTAQ-GTITLELVKQTEDTALFSVSDTG 467

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++     +   F +         QG GLGL I Q I+   GG+  I     +G   +
Sbjct: 468 CGISKENQNKIFNRFEKLDE----NAQGTGLGLSICQLIIEQLGGKIWIDPDYDKGARFL 523

Query: 470 AILPNT 475
              P  
Sbjct: 524 FTHPIR 529


>gi|29347007|ref|NP_810510.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338905|gb|AAO76704.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 539

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++   ++ +K+AE+    KS FL++MSHE+RTPLNA+ GFS ++  E+   ++NET ++
Sbjct: 293 QSQQEQEKAKKQAEKSIHTKSLFLSNMSHEIRTPLNALSGFSAILTEES---IDNETKQQ 349

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               I ++ + LL LIN+++DLS +E G+ +   +   ++ + R  I M++ + ++   E
Sbjct: 350 CNDIIQQNSELLLKLINDVIDLSSLEIGKMQFKFNECDIVALCRNVIDMVE-KIKQTQAE 408

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +      S   +  D   ++QV++NLL NA KFTA  G + + +   +      S+ D G
Sbjct: 409 VRFSTSLSSLKLTTDSARLQQVLINLLINATKFTAQ-GTITLELVKQTEDTALFSVSDTG 467

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++     +   F +         QG GLGL I Q I+   GG+  I     +G   +
Sbjct: 468 CGISKENQNKIFNRFEKLDE----NAQGTGLGLSICQLIIEQLGGKIWIDPDYDKGARFL 523

Query: 470 AILPNT 475
              P  
Sbjct: 524 FTHPIR 529


>gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 963

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K  FLA++SHELRTPL AILG +E++  E +        +E +  I  S   L N
Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPL----PPEAQESVELILESAFRLKN 787

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +++ +LD SR+EAGR+E+S   + L  ++ E     Q  A+   +E   +++  L  +  
Sbjct: 788 MVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEE-LPLMEV 846

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NLL+NA KFT  GG V +  G   G   ++ ++D GPGI + EIP +   
Sbjct: 847 DPDRIVQVVGNLLANAFKFTPPGGSVRLWAG-VRGEEVWVEVQDTGPGIPKEEIPRLFQR 905

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + +          G GLGL I++ I+  HGG+  + S+  +G     ILP 
Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILPL 956


>gi|288942026|ref|YP_003444266.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897398|gb|ADC63234.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 556

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 21/288 (7%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +    +  + +L  ++ +  L A          + +  AE+ N+AKS FLA+M HELRTP
Sbjct: 169 SRSDGRQILVVLVDRSAEQALRALSH----ELIQAKLAAEQANVAKSAFLANMGHELRTP 224

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NA++G S ++   +         ++Y+  IH S   L +L+N+ILD S++E+G   L  
Sbjct: 225 MNALIGLSNLLLDGSEAM--TPHQRDYLLKIHDSAAALSSLLNDILDYSKVESGYLRLES 282

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382
           + ++L +I+     +    A+EK +       P +  V   D   ++QV+ +L+ NA++F
Sbjct: 283 TPLNLDNILDRTRQLYMPCAEEKGLAFSCVRAPEVPPVLAGDPLRIQQVLDHLVDNAIEF 342

Query: 383 TAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           T   G V V V   +   +               SI+D G G+   +   +   F Q  +
Sbjct: 343 TER-GSVRVGVVLVAAPARVASKTAAGERLVLRFSIEDTGIGLTPEQCQALFAPFQQADM 401

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           +      G GLGL + Q ++    G+  + S+L EG      +P   V
Sbjct: 402 SASRVHGGTGLGLSLCQRLVELMSGEIGVESRLGEGSTFWFTVPLRLV 449


>gi|193215590|ref|YP_001996789.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
 gi|193089067|gb|ACF14342.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
          Length = 1054

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 140/316 (44%), Gaps = 14/316 (4%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              V  A+      +     + +            +    L +    +    AE+   +  
Sbjct: 743  ASVSFAILPAPWQTWWAYLLYVLASGGLIFGLIRWRIATLEEQKRALEKIVAERTAEVVR 802

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             + A   S+E  ++    +  K+ FL+  +H+L+ PL +ILGF+++++       N E  
Sbjct: 803  QKTALETSNEELRKL---SNLKTEFLSIAAHDLKNPLQSILGFAQLVKEN---AKNAEMV 856

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             +    I++S + +  LI ++L+ S+IE+G+ EL++S + L  +       LQ +A +K 
Sbjct: 857  AQMGDAIYQSSKRMFLLIKDLLETSKIESGKLELNQSPVDLASLASIVADSLQFQAYQKE 916

Query: 348  IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401
              I  +++ S   V AD   + +V+ NL+SNAVK++     + + V  T           
Sbjct: 917  QTIQVQMEKS-CDVLADGDRISEVLENLISNAVKYSPNKTTITIVVRKTRSENGDGQELV 975

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             +++KD G G++  +   +   F + S      E   GLGL I ++++  HGG+    S 
Sbjct: 976  QLAVKDEGLGLSAEDKQKIFGRFQKLSARPTGGESSTGLGLSIVKTLVEAHGGRVWAESD 1035

Query: 462  -LREGVEVIAILPNTR 476
               +G      LP  +
Sbjct: 1036 GKNKGTTFFVELPAYK 1051


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 237 ETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           E R+RAE     + AK  F +++SHE RTPL  ILG  E +  E          +E +  
Sbjct: 346 EQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLILGPLEELLSEPARSALPADAREQLKV 405

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +HR+   LL L+N +LD SR+EAGR +     + L +   + + + +   ++  + +   
Sbjct: 406 VHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDLPEFTADLVAVFRSAIEKAGLRLQVD 465

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
             P+      D +   +++ NLLSNA KFT   G + V++    G    + ++D G GI 
Sbjct: 466 CPPAPFPALVDREMWEKIVFNLLSNAFKFT-RHGEIEVSLHCL-GPTFELRVRDTGLGIP 523

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 V   F +   A     +G G+GL + Q ++  HGG   + S++  G  V   +P
Sbjct: 524 PESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVTIP 583

Query: 474 NTR 476
             R
Sbjct: 584 VHR 586



 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 121/269 (44%), Gaps = 9/269 (3%)

Query: 212  VKILSCQAEKDDLIAELEVA-KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +       E        E A +   +  R  A   + AK  FLA++SHELRTPL+ +L  
Sbjct: 1141 ITDRRLAEEAIHASRNAERAHRVELERARDEAVAASRAKDDFLAALSHELRTPLSPVLLL 1200

Query: 271  SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            +         P    + +     I +S +    LI+++LDL+RI   +  L    +    
Sbjct: 1201 A---SDAAADPQLPPSVRADFETIRKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPV 1257

Query: 331  IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
             +R+ +I ++   + K I +   + P    V AD   ++QVI N+L NAVKFT  GGRV 
Sbjct: 1258 ALRDALINVRAEFEAKRIGLVLDLSPEPQFVRADPVRLQQVIWNVLKNAVKFTPAGGRVT 1317

Query: 391  VTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIA---IKSAEQGVGLGLPIAQ 446
            +T      R +  +++ D G G+  GEI     +F QG  A         G+GLGL I++
Sbjct: 1318 ITSRIDHERRRLVLAVADTGIGMTAGEIERAFEAFAQGDHAGSGGSHRFGGLGLGLAISR 1377

Query: 447  SIMANHGGQFLIRSK-LREGVEVIAILPN 474
             ++  HGG    +S     G      LP 
Sbjct: 1378 RVVELHGGSITAQSPGRGRGAVFRIELPL 1406


>gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis KIM 10]
 gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Antiqua]
 gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis CO92]
 gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10]
 gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Nepal516]
 gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Antiqua]
 gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CO92]
 gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 957

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 461 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 516

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 517 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 576

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 577 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 634

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 635 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 694

Query: 469 IAILPN 474
              +P 
Sbjct: 695 AIRIPL 700


>gi|229010081|ref|ZP_04167295.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
 gi|228751214|gb|EEM01026.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
          Length = 421

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 199 ERSEFLASVAHELRTPLTYVRGYADIASKENTPP---EQRLRYLSIIKDESDYITNLVQD 255

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      + +   EK I++      SL  V  DE+ 
Sbjct: 256 LFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLL-VKLDEQR 314

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV+ N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 315 FEQVMANILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 373

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 374 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|88797705|ref|ZP_01113293.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Reinekea sp. MED297]
 gi|88779382|gb|EAR10569.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Reinekea sp. MED297]
          Length = 976

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/451 (21%), Positives = 169/451 (37%), Gaps = 42/451 (9%)

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
               +   I P+ + I L  +  N+   K+         +  +W +  ++        W 
Sbjct: 244 AWVISGMTIAPLVASICLIAFGLNILQLKRFRPKLGLWYQRAIWLVLAILPLTLFHFGWL 303

Query: 123 LL------TLVEPGTWTPEYLTI-------YKSATLLIALSISALSNFMLPYAVFLSFFP 169
                    ++           I          A   I +++       L    + S   
Sbjct: 304 SFWLEITVVVLTIALGGIAATLIREGHRASVYFAISFIFIAVGYGIETTLYSLPWQSMIG 363

Query: 170 VVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-- 220
             +A      M  + L          LA  LA+ +      T    +  +  L+ +A+  
Sbjct: 364 TELARQIIPWMEQYFLYSCVVIEVFFLALALASYIDGLRAQTAQARQQVIDQLTDKAKLK 423

Query: 221 -----------KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                      K+      E  + LSD+   R  E +  KS FLA+ SHE RTPL  I G
Sbjct: 424 EDYAIQLENTVKERTDQLNEKQQILSDQ-NDRLLELDQMKSHFLANFSHEFRTPLTLIKG 482

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             + I    +G  N+ T +  I    RS + L  L+ E+L LS +EA + +L   +  L 
Sbjct: 483 PLKQILNGDLGEQNDATLQ-AIATSQRSAERLARLMEELLMLSHLEANQLKLQVQSTELN 541

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
              R  + + + +AQE+ +++  +     +  + D + +  V+ NL+SNA+KFT   G +
Sbjct: 542 SFCRRIVSLFEYQAQERELKLSCECLAEDTVAFCDVRKLETVVYNLISNAIKFTPRQGAI 601

Query: 390 HVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            V +       Q        + D GPGI   +   V   F +     +S  +G GLGL +
Sbjct: 602 TVQLSVEGDADQTERFYRFEVSDTGPGIPVEQREQVFQRFYRLQKDARSGAEGSGLGLSL 661

Query: 445 AQSIMANHGGQFLI-RSKLREGVEVIAILPN 474
            + +   HGG  L+  S +  G      +P 
Sbjct: 662 VRELTEMHGGTVLVTESTMG-GSCFTVRIPL 691


>gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 299

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 132/272 (48%), Gaps = 10/272 (3%)

Query: 218 QAEKDDLIAELEVAKS-------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           Q E + L AELE             D   ++  +    KSRFLA MSHE RTP+++I   
Sbjct: 25  QQEIELLRAELEETNRGVVALYSELDTQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSI 84

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++     GPLN E  ++ +  I  +     ++++++LDL++IEAGR ++S +   ++D
Sbjct: 85  ARLLADHVDGPLNAEQSRQ-VAFIQATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVD 143

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + +    M +  A    + +  +   +L +++ D++ + Q++ N +SNA+KFT   G V 
Sbjct: 144 LFQALRGMFKPVATNPELNLVFEEPRNLPALFTDDRKLSQILRNFISNALKFTPR-GEVR 202

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V+     G     S+ D G GIA      V   F Q    ++   +G GLGL + + +  
Sbjct: 203 VSAQACDGERVRFSVADTGIGIAPEFHARVFEDFSQVGSPLQKRLRGTGLGLALCRQLAE 262

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             GG   ++S   EG      LP  R+    P
Sbjct: 263 LLGGAVELQSVPGEGSVFSVTLPV-RLPEPTP 293


>gi|265983704|ref|ZP_06096439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|264662296|gb|EEZ32557.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
          Length = 532

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 195/473 (41%), Gaps = 23/473 (4%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                +    P ++ F      + +        IL    +      +         +  L
Sbjct: 41  AALWLMAAGLPLEIWFASRKPGITIAGSLAAMAILAFLAVKTGGTIS-GGSLISGAILLL 99

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
              ++    +++ +K     +   +V V    +  G    G+  ++             +
Sbjct: 100 YAASLVLRGVAVARKPAQISVAAPQVAVAAGDMQFGLDIEGIVSSVDGETAKLLGVQPKM 159

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +    + ++   +    L   +        V +  ++I + + +  +     A + 
Sbjct: 160 LEGTALIDRVHVA-DRVQYLSLLADLRAGMATRKVDVRLRSIENGNPVFRAYRFEGAGSH 218

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              T I   L                L+ E+ + K+  +  R         K R LA++S
Sbjct: 219 RAITLIGRSLEGEQ-----------KLLDEIAMLKAELESERI-------GKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRADNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|225418770|ref|ZP_03761959.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
 gi|225041704|gb|EEG51950.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
          Length = 1133

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FL+ MSHE+RTP+NAI+G S +         ++E   + I  I  S + LL+LI
Sbjct: 674 NAAKSDFLSRMSHEIRTPMNAIIGMSTIAAQSIG---DDEQVADCISKIGISSRFLLSLI 730

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364
           N+ILD+SRIE+G+  L    I   D +     +   +A  K +E    +DP LS  +  D
Sbjct: 731 NDILDMSRIESGKMLLKSERIPTEDFLGGINSICYSQAAVKGVEYECIVDPVLSDYYMGD 790

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTV 420
              ++QV++N+LSNA+KFT  GG+V  +        S       + D G G+ E  +P +
Sbjct: 791 AMKLQQVLINILSNAIKFTGEGGKVTFSAMERRKIKSDAILRFVVNDTGVGMNEEFLPHI 850

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              F Q S    +   G GLGL I+++I+    G+  +RS    G E   
Sbjct: 851 FEPFSQESTGTTALYGGTGLGLAISKNIVDMMDGKISVRSIKGIGTEFTV 900


>gi|222094404|ref|YP_002528463.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238461|gb|ACM11171.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 463

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   ET  P   +    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---KQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      +    +E+ I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     ++++V     +   I+++D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHINISVT-EENKRISITMEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|254464572|ref|ZP_05077983.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales
           bacterium Y4I]
 gi|206685480|gb|EDZ45962.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales
           bacterium Y4I]
          Length = 346

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 10/237 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A++GF E +        +      ++  +      + 
Sbjct: 113 EQAGQMRRDFVANVSHELRTPLTALIGFIETLR--GPAREDAPARDRFLAIMEGEASRMN 170

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L L+R+E+      +  + L   +   +  LQ  A+ + +++  +      SV 
Sbjct: 171 RLVGDLLSLNRVESEERVRPKQTVDLTGHLASTLKTLQPVAEARGVQVSLEAPDEAVSVT 230

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGE 416
            D   ++QV  NL+ NAVK+   G +V V +  T            + + DNGPGI    
Sbjct: 231 GDPDQLQQVFTNLVENAVKYG--GDQVRVVLSRTDRDPSVRAAAARVQVIDNGPGIDPVH 288

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +P +   F +          G GLGL I + I+  H G+  + S+L +G     +LP
Sbjct: 289 LPRLTERFYRADSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGQGSVFTVVLP 345


>gi|86133740|ref|ZP_01052322.1| two-component system sensor histidine kinase/response regulator
           [Polaribacter sp. MED152]
 gi|85820603|gb|EAQ41750.1| two-component system sensor histidine kinase/response regulator
           [Polaribacter sp. MED152]
          Length = 507

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 8/273 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           ++KS   +   + +   L  E+          R+ A++ N  KSRFLA MSHE+R PLN 
Sbjct: 97  VYKSVNHLNQSRNDLYFLKREIAEKNKELIRLREIADKANSEKSRFLAMMSHEVRNPLNV 156

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG++E+I  E    +     +EY+  I  SG++L  ++++ILDLSR+EAG+  L+   +
Sbjct: 157 ILGYTELINKEETSLMA----QEYLKYITISGRNLKVIVDDILDLSRVEAGKLVLASEPM 212

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385
           S+  I+ +     Q   ++ +IE+   +  +L   V  D+  + Q++ NL++N++KFT  
Sbjct: 213 SISSIIEQIKNNYQGSHKDLDIELEFNVSDNLPEEVLGDDVRLIQILTNLINNSIKFTPR 272

Query: 386 GG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G     V +    T        +KD G G+   +   +   + Q  ++      GVGLGL
Sbjct: 273 GTVTTSVELLFSDTDKALISFKVKDTGRGMTPEQADKIFDEYQQNRLSDNRMHNGVGLGL 332

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            I + ++    G+  + S    G  +   +P  
Sbjct: 333 SIVKRLVDVMEGRIKVDSLKNYGTTISIDIPFK 365


>gi|254718728|ref|ZP_05180539.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|306838706|ref|ZP_07471541.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
 gi|306406193|gb|EFM62437.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
          Length = 609

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 195/473 (41%), Gaps = 23/473 (4%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                +    P ++ F      + +        IL    +      +         +  L
Sbjct: 118 AALWLMAAGLPLEIWFASRKPGITIAGSLAAMAILAFLAVKTGGTIS-GGSLISGAILLL 176

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
              ++    +++ +K     +   +V V    +  G    G+  ++             +
Sbjct: 177 YAASLVLRGVAVARKPAQISVAAPQVAVAAGDMQFGLDIEGIVSSVDGETAKLLGVQPKM 236

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +    + ++   +    L   +        V +  ++I + + +  +     A + 
Sbjct: 237 LEGTALIDRVHVA-DRVQYLSLLADLRAGMATRKVDVRLRSIENGNPVFRAYRFEGAGSH 295

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              T I   L                L+ E+ + K+  +  R         K R LA++S
Sbjct: 296 RAITLIGRSLEGEQ-----------KLLDEIAMLKAELESERI-------GKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRADNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 786

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 148/270 (54%), Gaps = 6/270 (2%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +         +       +   E     + RAE  N AKS FLA+MSHELRTP
Sbjct: 480 ERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEFLANMSHELRTP 539

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+GF+E++E E  G L +  Y +Y  DI +SG +LL++I++IL +SRIEA R +L  
Sbjct: 540 LNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEANRVKLVR 599

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L   +   + ++   A  K++ I  ++  +L +V ADE+ + Q++LN++ NAVKFT
Sbjct: 600 REIGLDAAIAAAVTLVSKEAASKSVAIDIELAGTL-NVLADERALHQILLNIIQNAVKFT 658

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGRV +  G +     ++ I D G GI +  I  +   F Q    +  + +G GLGL 
Sbjct: 659 PEGGRVALR-GRSCNGFAHLFIGDTGIGIPKAAISKLGRPFEQVETNLTRSYKGSGLGLA 717

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           IA+S    HGG   IRS+   G  V+  LP
Sbjct: 718 IARSTAELHGGSLRIRSEEGVGTLVLVRLP 747


>gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 968

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 5/276 (1%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           T  +   N   +         I  L+ A++   +  ++  E +  +S F++ +SHE RTP
Sbjct: 698 TERVMFDNEVNIVEFQGVGRDITPLKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTP 757

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L AIL  SE++       L +E  K +   I  +   +  L++++L + + EAG+     
Sbjct: 758 LTAILSSSELL-DRYSKKLTDEKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAGKLTFKP 816

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           ++++LI   ++ +  LQ+   +    I             DEK ++ ++ NL+SNA+K++
Sbjct: 817 ASMNLIAFCQDIVDTLQMSISQ-QHSINFVCHGDCGDAQMDEKLLQHILNNLISNAIKYS 875

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           + G  V V +    G      I+D G GI   +I  + +SF +         QG GLGL 
Sbjct: 876 SQGSEVKVELTC-EGESAIFHIQDQGIGIPPEDIKKLFSSFQRAGNVGT--IQGTGLGLA 932

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           I +  +  HGG   + S++ +G     ILP   +  
Sbjct: 933 IVKKCVDLHGGLITVESEVGKGTTFTIILPLQSMAE 968


>gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 593

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 15/264 (5%)

Query: 238 TRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            RKRAEE     + AK  FLA+ SHELRTPL A  G + +  L+  G     T K  +  
Sbjct: 336 ERKRAEEALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKS-LKI 394

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+R    +  L+ ++LD+SR++AGR  L      L  ++RE    + + +Q   + +  +
Sbjct: 395 INRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQ 454

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                     D   + QV+ NLLSNA++++  GG V V           +S+KD G GI 
Sbjct: 455 EQLEGLW---DRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEG-VQLSVKDCGVGIP 510

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAI 471
             +   +   FG+   +      G+GLGL I+Q I+  HGG+  + S+    +G      
Sbjct: 511 PEKQGLIFERFGRAHGS---KYGGLGLGLTISQGIVEQHGGRIWVDSQGCAGDGSTFHVW 567

Query: 472 LPNTRVLNFIPEDNHESTQYKCYA 495
           LP   V    PE    S+     A
Sbjct: 568 LPREAV-QTGPETPSASSDEHSRA 590


>gi|218129732|ref|ZP_03458536.1| hypothetical protein BACEGG_01311 [Bacteroides eggerthii DSM 20697]
 gi|217988144|gb|EEC54468.1| hypothetical protein BACEGG_01311 [Bacteroides eggerthii DSM 20697]
          Length = 1364

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 129/277 (46%), Gaps = 17/277 (6%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +       + + +     AE+ N AK +F  ++SHE+RTP++ I+   + +        
Sbjct: 806  QIRQRYRARQEMLEH--IHAEQLNEAKLQFFINISHEIRTPMSLIISPLQKLMATD---S 860

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            + E  + Y   I+R+ + LL L+N+++D+ +I+ G+ +L      ++  +++       +
Sbjct: 861  DTERQQSY-NIIYRNAERLLRLVNQLMDIRKIDKGQMQLKFQETDIVSFIQDLHYTFAYQ 919

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            A  K+I++    +      W D K   +VILN+LSNA KFT   G + + +   +     
Sbjct: 920  ANTKHIKLAFHSEVKELKAWIDPKNFDKVILNILSNAFKFTPENGNIQIRLRTGNDPDAA 979

Query: 399  -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     ISI+D+G GI E E+  +   F Q   +  ++  G G+GL + +S++  H 
Sbjct: 980  EKALSHYFEISIEDDGIGINETELERIFDRFYQIRNSQNNSNIGTGIGLHLTRSLVELHH 1039

Query: 454  GQFLIRSKLR-EGVEVIAILPNTRVLNFIPEDNHEST 489
            G   + +     G   I  LP  +  +  PE+   S 
Sbjct: 1040 GSITVENNQGTSGCRFIVRLPLGK-EHLKPEEIDNSA 1075


>gi|95928482|ref|ZP_01311229.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135272|gb|EAT16924.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 355

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 137/306 (44%), Gaps = 5/306 (1%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++ +   +I+ + +  +    +L         +  +    ++  LS +A+      EL +
Sbjct: 42  LLTIVACSIVIITLFSLGFRLVLNIHRRTLLQMVDNFRDMSIDHLSLRADFPTSCVELGI 101

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +   +   +R E       +F    SHELRTPL  + G +EV           E ++  
Sbjct: 102 LRDEYNAMLERLESAVQRVRQFSGDASHELRTPLTILRGETEV---TLHWAKTPEEFRAA 158

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +         +  ++ ++L L++ E+G   LS   +SL D+V+E  I  +  A+ K+I +
Sbjct: 159 LQSNMEEIDRMGRILEDLLTLAKSESGELPLSIGQLSLSDLVQELYIQGRTLAEGKDITV 218

Query: 351 FQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                  S  S+  D+  +RQ+ LNLLSNA+++T+ GGRV + V         +++ D+G
Sbjct: 219 SMHHGADSEVSIRGDDLRLRQLFLNLLSNAIRYTSEGGRVDIDVSRC-DDTVTVAVIDSG 277

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GIA   +P +   F +   A   A  G GLGL I + I   H G   + S + EG    
Sbjct: 278 IGIAPEHLPHIFERFYRTDEARNRAHGGTGLGLAIVKWITEAHDGTIRVTSTVNEGSRFE 337

Query: 470 AILPNT 475
             LP  
Sbjct: 338 VCLPLA 343


>gi|256060709|ref|ZP_05450873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 609

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
           + +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 RTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAE-EENLA-KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E     K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|68535407|ref|YP_250112.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
 gi|68263006|emb|CAI36494.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
          Length = 536

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 140/324 (43%), Gaps = 9/324 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNV 212
           +S  +L  AV        V L++  ++   +  ++   + A+ +S           + N 
Sbjct: 221 ISRLVLLQAVIGLTVVAFVILASMYLVRRALRPLNEVELTASKISNGDLGQRVPNWRPNT 280

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++       + ++A+++ A      + ++A     +  RF+   SHELRTPL ++ G++E
Sbjct: 281 EVGRLSQALNKMLAQIQTAFVAIGASERQARRSEASMRRFIGDASHELRTPLTSVRGYAE 340

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           + +               I  I      +  L+ ++L L R++ GR  L+++ + ++++V
Sbjct: 341 LYQSGATDDAPM-----VIDRISEEAGRMSLLVEDLLALVRMDEGR-PLAKNRVDMLELV 394

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E     +     + +++       +  V  D   + QV+ NL++NA++       V + 
Sbjct: 395 LETAESARAGFPNRTVQV-VNETGDVPIVIGDVNRLHQVLGNLVTNALRHAGEDAEVKLR 453

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +         + ++DNG GI   ++P +   F +  ++   A  G GLGL I + ++  H
Sbjct: 454 LDKR-DGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSIVKGLVEAH 512

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
           GG   + S+  +G      LP   
Sbjct: 513 GGTVSVDSEEGQGTRFRIDLPEAE 536


>gi|255012671|ref|ZP_05284797.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. 2_1_7]
          Length = 1342

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 6/271 (2%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             Q  + +L  +++    L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E 
Sbjct: 780  YQLRQAELERKIQERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLER 839

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    +    KE +  I R+   L+  +NE+LDLS +  G          L   ++E  
Sbjct: 840  HSGSEESCGD-KETLRTISRNTNRLIRHVNELLDLSVLTRGVPSPHIVCADLSRFLKEIS 898

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                  A    I     I P +S  + D+  + QV+ NLLSNA K+T  GG V  +    
Sbjct: 899  ETFIPLADSYKIAFTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSALLE 958

Query: 397  ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               S     + I D+G GI    +P +   + +G        +  G+GL   + ++  H 
Sbjct: 959  QSSSDAVMTLRITDSGIGIPPESLPYIFDQYYKGESIAFRRSESSGIGLAYTKELLELHK 1018

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  S+L +G      LP +      PE+
Sbjct: 1019 ATIQCESELGKGSVFTVALPISE--EAYPEE 1047


>gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 850

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            ++ FLA MSHELRTPLN ILG S++++ + +   +     E++  +  SG+HLL ++N+
Sbjct: 473 MRADFLAKMSHELRTPLNGILGVSQLLKDKMVDQRD----IEHVEVLCNSGEHLLAVLND 528

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEK 366
           ILD S+IE G++ +      L+++      + +    +KN+        P      +D+ 
Sbjct: 529 ILDFSKIEQGQFHIESEPFRLVELTNTVERIFKPLLDDKNVAFEVVNKIPHDKWANSDQV 588

Query: 367 GMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSF 424
            + Q+I NL+SNAVKFT  G   V +            + + D G GI +  +  +   F
Sbjct: 589 RLNQIIFNLVSNAVKFTHHGSVTVTLGCQHQESGCLLNLDVVDTGIGIEQHRLSHIFEPF 648

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q          G GLGL I QS++   GG+  + S++  G      +P  
Sbjct: 649 VQAEANTTREYGGSGLGLAIVQSLVTIMGGEIKLESEVDVGTRFSVRIPLE 699


>gi|315920397|ref|ZP_07916637.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694272|gb|EFS31107.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1308

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 773  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 829

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 830  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 889

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 890  EQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELA-DGTEECMFSVSDNGAGISEED 948

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 949  YVKIFERFYQVEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1006

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1007 AHFDSSVARIEPEQDKE 1023


>gi|260172086|ref|ZP_05758498.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1341

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              ++  EE N +K RF  ++SHE+RTP+  ILG  +++     G L+   Y + +  IH+
Sbjct: 806  REKQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLN-IHK 862

Query: 297  SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
            +  +L +LI E+LD  + E G  +L  S   L  +++E  ++ +  A  +NI      D 
Sbjct: 863  NAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADC 922

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
                VW D   +++V+ NLLSNA K+T+ GG + + +          S+ DNG GI+E +
Sbjct: 923  EQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELA-DGTEECMFSVSDNGAGISEED 981

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
               +   F Q          G G+GL ++Q I+  H G   + S+L +G      L    
Sbjct: 982  YVKIFERFYQVEN--IGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKKGD 1039

Query: 475  ----TRVLNFIPEDNHE 487
                + V    PE + E
Sbjct: 1040 AHFDSSVARIEPEQDKE 1056


>gi|228914596|ref|ZP_04078205.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933304|ref|ZP_04096160.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826465|gb|EEM72242.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228844915|gb|EEM89957.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 444

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 222 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 279

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 280 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKTIER--IELI 337

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD+G GIA+  +P +  
Sbjct: 338 GDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQ-AVIKVKDDGIGIAKEHLPYIEQ 396

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 397 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 444


>gi|229096501|ref|ZP_04227472.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29]
 gi|229115475|ref|ZP_04244881.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3]
 gi|228667888|gb|EEL23324.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3]
 gi|228686707|gb|EEL40614.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29]
          Length = 351

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 18/348 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +     L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 10  FGAVLALFTFLTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 69

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 70  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 125

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 126 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 183 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHVTADQE 240

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I D+G GI+E +   +   F +
Sbjct: 241 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRICDSGIGISEEQKQHIFERFYK 299

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +   A  G GLGL I + ++  H G+  + S+   G E I  +P 
Sbjct: 300 ADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347


>gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
 gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
          Length = 445

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 169/438 (38%), Gaps = 11/438 (2%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
           F   P+      +   +            W +  +++    L L  +  +S  +   V  
Sbjct: 14  FSQPPLRSFGPAVAGMVLILALVVANASSWLVGLVSLVVIGLLLVFRHWHSSQQDDAVSA 73

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           +              W                 + + +  +I L+       + P AV L
Sbjct: 74  YVRDSTEEIQ----KWQERLRCLHAETRQNASALLQLSDGVIVLAKDFSVLLINPSAVRL 129

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                  AL  +    +  +   LA +           +      +  ++ L  + +  D
Sbjct: 130 LGLKKRDALLGRCFTELVRVPQLLASIRSAVREQQPQEFTVEVHDQGVMRPLRVRVDLID 189

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              E  +  SL DE    A      +  F+A++SHEL+TPL AI G++E +  E     +
Sbjct: 190 TGEEPNLQLSLRDE--TEARRVEEMRREFIANVSHELKTPLAAIKGYAETV--ELAVQDD 245

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +    ++  I      L  L++E++ L+R +AG   L  S++SL +IV + I   +  A
Sbjct: 246 PDAALHFMQQIMSQCLRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVA 305

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
               +++ Q++    + + AD +    +  NL+ NA+++T  GG + V++   + +   +
Sbjct: 306 AANGLDLIQEVPSGEAKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALV 365

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   +   F +GS   +S+  G GLGL I + +     G   + S   
Sbjct: 366 -VEDTGVGIPYSEQQRIFERFYRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPG 424

Query: 464 EGVEVIAILPNTRVLNFI 481
           EG      LP  +    +
Sbjct: 425 EGSRFCVCLPAVQASTEL 442


>gi|94499493|ref|ZP_01306030.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94428247|gb|EAT13220.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 637

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 15/330 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +  A+    +++   +   LA M  + L                 +    E   L  
Sbjct: 183 ISLLTGAVVILLVITGAYILNRLAVMPLSKLLAKIEGFGTDKDEPAAAVKGFKEIARLSE 242

Query: 227 ELEVAKS----LSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             + A        +E+R  A   ++ N AK  FL++MSHE+R PLN I G  +++     
Sbjct: 243 AFDDADRKILNALNESRHAAKVAQDANRAKGDFLSNMSHEIRNPLNGIYGILQLLSKN-- 300

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
               +   ++ +     S + L  +IN+ILD S+IE+    L E   S   IV +    +
Sbjct: 301 -EQLDSEARDLLSKAVYSTKSLGFIINDILDFSKIESRALRLEEMPFSFDQIVAQTQSEI 359

Query: 340 QLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
              A+EK+++I  K     +     D   ++Q++LNLLSN VKF   GGRV +       
Sbjct: 360 GALAKEKSVKITSKPLAKDVDGWLGDPTRVKQILLNLLSNGVKFA-KGGRVDINAWTEHL 418

Query: 399 RG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            G      S+ DNG G+ +  +  +   F Q S +      G GLGL I ++++    G 
Sbjct: 419 DGKIHLCFSVDDNGVGMDQETLSRLFNRFEQASASTSRRFGGSGLGLAITKALVEMMDGS 478

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
             + S++ +G  V   LP        P  +
Sbjct: 479 IEVTSEIHKGTSVKVRLPLEHSDIQSPTQD 508


>gi|16127305|ref|NP_421869.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236107|ref|YP_002518544.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13424725|gb|AAK25037.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965280|gb|ACL96636.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 850

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 10/309 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L   +     +        + +    A           A       ++RAE  + AKS F
Sbjct: 409 LTEQVRLSRSLARASVVIALLLGVLVAGAAAWAVHQRGASRRLRLAQERAEAASTAKSAF 468

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA MSHELRTPLN +LG ++ +  + + P      +E +  I  SG  LL L+N+ILDLS
Sbjct: 469 LAVMSHELRTPLNGMLGLAQALRSDQLTP----AQREQVDLILDSGDTLLVLLNDILDLS 524

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371
           +IEAG+ E++ +A  L+      +   Q  A+EK + +  ++D      +  D   +RQ 
Sbjct: 525 KIEAGKLEIAPTAGDLVQTCARLVGGYQPTAREKGVTLSFQLDGEAPGWLMFDGVRVRQC 584

Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGS 428
           + NL+SNA+KFT+ G   V +     +G    +   + D G G+    +  +   F Q  
Sbjct: 585 LSNLVSNALKFTSQGKVEVALACYPEAGDRVRVRLRVADTGIGMNAATVAKLFRPFTQAD 644

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPEDNH 486
            +      G GLGL I + ++    G   + S+   G      +   + L     P +  
Sbjct: 645 ASTTRNFGGTGLGLNITRRLVEMMRGDIQVESEEGVGSVFTIEMVMDQALAIEAAPSEAG 704

Query: 487 ESTQYKCYA 495
            +++    A
Sbjct: 705 ATSESIGAA 713


>gi|307301503|ref|ZP_07581263.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306903560|gb|EFN34148.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 1126

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 181/446 (40%), Gaps = 30/446 (6%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           I  +   +V+ +  W+T+   +        W   +    +            D+     Y
Sbjct: 465 IALVTAFVVSPLIAWWTEGKFYLARKPRKSWLAESEITCSIC---EHPFEPEDMAWCPAY 521

Query: 105 VWRIWLLVGQI------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
              I  L   +             +      +            L        + A+   
Sbjct: 522 AAPICSLCCSLDSRCHDMCKPKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISI 581

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                ++   +           +     ++ ++    A +      F+         +  
Sbjct: 582 TGIG-VILAMIAHQTTAASPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAEE 640

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +           IA  +   +   + ++RAE  N AKSR++  +SHELRTPLNA+LG+++
Sbjct: 641 ESSRQNTALLKEIAAHKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQ 700

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P      +  I  I RS  HL  LI+ +LD+S+IEAG+ ++  + I++ D +
Sbjct: 701 ILERDETIP---PPRQGAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFL 757

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + M + +AQ K I        SL   V  D+K +RQ+++NLLSNA+KFT   G +  
Sbjct: 758 DQIVDMFRPQAQAKGIAFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTER-GHIRF 816

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V +   +    +I+D+G GI+E ++P +   F +G         G+GLGL I + +   
Sbjct: 817 DVAYR-SQVASFTIEDSGRGISEKDLPRIFEPFQRGEAEY--RMPGLGLGLTITRLLTQT 873

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRV 477
            GG+  + S+  +G      L  + V
Sbjct: 874 LGGEISVTSEKDKGTAFKVRLMLSAV 899


>gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 438

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  FL+S++HELRTPL  I G+++++    +     +  ++Y+  I      L  LI 
Sbjct: 206 QERKEFLSSIAHELRTPLTFIKGYTDILAKRDL---TEQDRQKYLAIIIEETNRLSRLIK 262

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++ DL++++   + + +  + L          L    Q+K I +  + D  L +++ADE 
Sbjct: 263 DLFDLAKMDENSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRCDSGL-TLYADEA 321

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q+++NLL+NA+ + A G    VTV         I+++D G GI + ++P +   F +
Sbjct: 322 RLEQILINLLNNALIYCAPGDMTTVTVK-KDSGTLSITVEDTGKGIPKKDLPYIFDRFYR 380

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   A  G GLGL I + ++  HGG+  +RS++ +G       
Sbjct: 381 VEKSRSRALGGSGLGLAIVKELVQAHGGEIKVRSEINKGTTFELSF 426


>gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
 gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 122/281 (43%), Gaps = 12/281 (4%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET---RKRAEE---ENLAKSRFLAS 255
           ++   + +             DL+        +       RK A+        +  F+++
Sbjct: 165 FVVRPIQRFTHATKEVACGNYDLVLPENRRDEIGTLATSFRKMAKRLRNSEQMRQEFVSN 224

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHE ++PL++I GFS+ ++   +          Y+  I    + + +L  ++L L+ ++
Sbjct: 225 VSHEFQSPLSSIQGFSKTLQTNDLTKS---EQTHYLEIIESESRRMSSLCKQLLILASLD 281

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
                L + +  L + +++ I ML+   + +  E+  ++D     ++ DE  + QV +NL
Sbjct: 282 KEDLTLRKQSFDLGNQIKDTIFMLE--WEWRTKELAVEMDVPNMQIYGDENLLHQVWMNL 339

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
            +N++KFT  GG +             ISI D G GI E EI  +   F +   A     
Sbjct: 340 FTNSIKFTESGGTIAFEAEELETEW-RISITDMGIGIPENEIKKIFDRFHKVDTARNRNV 398

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            G GLGL I + I+  H G   + S+L +G      LP  +
Sbjct: 399 NGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPKQQ 439


>gi|326201365|ref|ZP_08191237.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325988933|gb|EGD49757.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             + I+LA  +   +   T     + + N+ +  C++  D++    +    ++ E +KR 
Sbjct: 186 GTISIALAHSIIHPIKNVTGAAELMAEGNLDVRICKSRNDEIGKLSDTLNYMASEIQKR- 244

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                 K+ F++++SHELRTPL +I G++  I  +     + E   + +  I +    L 
Sbjct: 245 ---ERIKNDFISTVSHELRTPLTSIKGWANTIIDDDYS--DREILSDGLNIIVKESDRLT 299

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +++ E+LD SR  +G  EL +    +  IV      +  RA+++ I    K + ++  V 
Sbjct: 300 DMVEELLDFSRFVSGNVELKKEKTDVSSIVDYIQKQMSDRAKKEKISFVAKCE-NIPIVD 358

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + Q+++NLL NA  FT   GRV + + +         ++D G GI+  E+P V  
Sbjct: 359 LDRNRITQLLINLLGNAFNFTPQNGRVAL-ISFWENENVVFRVEDTGCGISPEELPLVTE 417

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +G+ +        GLGL I   I+  H G   I S+L +G  V   +P
Sbjct: 418 KFYKGNSSNSH----TGLGLSICDEIVKLHNGSLSIESELDKGTIVTVRIP 464


>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 915

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 11/271 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I       +     ++ AE    A++ FL+++SHE+RTPLNA++  +E++  +T+ P 
Sbjct: 392 RNITAERQITADLLRAKEAAERTERAQAAFLSAISHEMRTPLNAVIASAELLLTDTLTP- 450

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              + +  I  I   G+ LL L+N +LDLS+IEAGR E++     +  IV   + + +  
Sbjct: 451 ---SQRSLIETIRIGGEALLALVNNVLDLSKIEAGRVEIAAEPTDVRAIVHAVLNLFKRE 507

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TS 397
           A +K + I   IDP L + + +D   +RQ+++NL+SNA++FT  GG V +T       T 
Sbjct: 508 ADQKGLLIEAVIDPHLPALIVSDPARLRQMLMNLVSNAIRFTDRGG-VLITASVIGMATD 566

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                I+++D G GI+  +   +   F            G GLGL I+  +    GG+  
Sbjct: 567 HPQVEIAVRDTGTGISAQQRSHLFQPFNHVDNDQTRQS-GAGLGLAISAQLAHLMGGELT 625

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +  +  +G      LP   V    P    +S
Sbjct: 626 VAGQPGQGSTFTVTLPLQPVAYSPPVTAGQS 656


>gi|2599570|gb|AAB84171.1| hybrid histidine kinase [Dictyostelium discoideum]
          Length = 709

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 9/270 (3%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VI 274
               EK     E+E   +      ++ +E +  K++F A++SHELRTPL  I+G ++ ++
Sbjct: 179 RNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVGPTDKLL 238

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           + E +        ++ +  + R+ + LL ++N +LD+SR+EAG+  L+ S ++L      
Sbjct: 239 KDENVDI----NVRKDLEIVARNARGLLKIVNNLLDISRLEAGKMNLNYSMVNLGQTAHL 294

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHV 391
                ++ A+EK+++              D   M++VI NL+SNA KFT  GG    +  
Sbjct: 295 IASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISNAFKFTPSGGAGKCILE 354

Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
               +  + G  I + D GPGI +     +   F Q   +      G GLGL I +  + 
Sbjct: 355 KFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTGLGLSIVKEFVT 414

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            HGG   I +    G +    LP T  ++ 
Sbjct: 415 LHGGTVTIHNISTGGAQFTLRLPLTPNMDE 444


>gi|150390093|ref|YP_001320142.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149949955|gb|ABR48483.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 451

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 4/230 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  +  F+A++SHEL+TPL ++   SE + ++  G  +   Y+E++ DI      L  
Sbjct: 219 QIDKQRRDFVANVSHELKTPLTSMKLLSESLLMQEGG--DIAIYREFLSDIDTEIDRLNK 276

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +I  +L L  +   +  +      +  +V +    ++  A++K I+I       +  ++ 
Sbjct: 277 IIESLLMLVDLNEDKLTIEYEITYVNYLVEKVTQSIKPLAEQKKIKIIINQWHKI-QIYL 335

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + Q + N++ NAVK+T  GG+V +T+    G    I I DNG GI+E E+P +   
Sbjct: 336 DQGKIHQALTNIIYNAVKYTEDGGKVVITLYR-EGNRAIIKIADNGIGISEEELPYIFER 394

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   A      G GLGL I++ I+  H G   + SK  +G  V   LP
Sbjct: 395 FYRVDSARSRKTGGSGLGLSISEQIIHLHQGTIEVESKEHKGTTVYVKLP 444


>gi|241762011|ref|ZP_04760095.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373477|gb|EER63064.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 421

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 169/439 (38%), Gaps = 29/439 (6%)

Query: 39  TLHVESLFRVSPILPLFVLLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
               +S  R   ++    + ++ +          + +   W +++L +         K +
Sbjct: 1   MTFPQSRLRKDCVIKFIPVYLSGLSILALFIIAVSHVSVGWPILSLMLIVILWGWWFKNI 60

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +                      G   T            + +       LL+      +
Sbjct: 61  SEASTPFPESK-----------SGNSLTDPAYPFSQATAADIIIAMDEPALLVNQGQVEV 109

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +N      + +      + ++ +   ++ +L   L  M    L+    +          +
Sbjct: 110 ANRAAENLLGMHIEGGDIRMAIRHPAAIRLLTEPLDNMTPVLLAGLGGVNRRWELYAYPL 169

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                E+  LI   + + +   E           +  F+A+ SHELRTPL  + GF E +
Sbjct: 170 ----NEEQRLILLRDQSTAHLTE---------QVRIDFVANTSHELRTPLATLSGFIETL 216

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E + +     +T   ++  + R  + + NL+++++ LSRIEAG++ L    + +  +V E
Sbjct: 217 EDDDVIKE-RDTRHHFLSIMAREAKRMQNLVDDLMSLSRIEAGKFSLPNDIVHMSPVVEE 275

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  +Q   Q K  +I  K   S  S+  D   + Q++ N++ NA+K+    G + V + 
Sbjct: 276 VVSNIQASGQAKAAQITLKNHLSSDSLQGDRAELTQLLYNIIGNALKYGRKDGIIKVALD 335

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T      ++I D G GI    IP +   F +   +   A  G GLGL I + I+ +H G
Sbjct: 336 NTDDHRIKLAIADEGDGIPFHHIPRLTERFYRVDNSRSRALGGTGLGLAIVKQIVEHHRG 395

Query: 455 QFLIRSKLREGVEVIAILP 473
           + LI S   +G  V   LP
Sbjct: 396 ELLIDSLPGKGTTVTVFLP 414


>gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 1323

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 20/296 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             L K    +   + E  +   ELE A+ L +E  K  E  +  KS FLA+MSHELRTPL
Sbjct: 596 EELEKQTRTLEHQKQELGEKNRELENARKLIEEKAKDLELSSKYKSEFLANMSHELRTPL 655

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N++L  ++++     G L  E   EY   IH +G  LL LINE+LDLS++EAG+  L+  
Sbjct: 656 NSLLLLAKLLHENKNGNLT-EKQVEYARTIHAAGADLLELINEVLDLSKVEAGKMVLNIE 714

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383
            +SL  +           A+EK +++  ++  SL   +  D + + Q++ NLLSNA+KFT
Sbjct: 715 EMSLKGLASYVEQNFAHVAEEKGLKLRIELTDSLPGCIRTDRQRVEQIVKNLLSNAMKFT 774

Query: 384 AIGGRVHVTVGWTSGRGQY------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
              G V V +   +                 IS+ D G GI E +   +  +F Q     
Sbjct: 775 RE-GEVGVYIARPAAGVVLSHSGVLPHKAIAISVSDTGIGIPEDKQRLIFEAFQQADGTT 833

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
                G GLGL I +      GG+  +RS+   G      LP       +P+   E
Sbjct: 834 SRKYGGTGLGLSIVREFTKLLGGEIHLRSEEGNGCTFSLYLP-----ENMPDARAE 884


>gi|261324700|ref|ZP_05963897.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
 gi|261300680|gb|EEY04177.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 532

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 24  AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 83

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
           + +    +  G +    +      +  G+          +   +      +         
Sbjct: 84  RTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 140

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 141 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 200

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAE-EENLA-KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E     K R LA++S
Sbjct: 201 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|16265269|ref|NP_438061.1| putative two-component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
 gi|15141409|emb|CAC49921.1| putative two-component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
          Length = 1126

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 181/446 (40%), Gaps = 30/446 (6%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
           I  +   +V+ +  W+T+   +        W   +    +            D+     Y
Sbjct: 465 IALVTAFVVSPLIAWWTEGKFYLARKPRKSWLAESEITCSIC---EHPFEPEDMAWCPAY 521

Query: 105 VWRIWLLVGQI------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
              I  L   +             +      +            L        + A+   
Sbjct: 522 AAPICSLCCSLDSRCHDMCKPKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISI 581

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                ++   +           +     ++ ++    A +      F+         +  
Sbjct: 582 TGIG-VILAMIAHQTTAASPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAEE 640

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           +           IA  +   +   + ++RAE  N AKSR++  +SHELRTPLNA+LG+++
Sbjct: 641 ESSRQNTALLKEIAAHKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQ 700

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           ++E +   P      +  I  I RS  HL  LI+ +LD+S+IEAG+ ++  + I++ D +
Sbjct: 701 ILERDETIP---PPRQGAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFL 757

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + M + +AQ K I        SL   V  D+K +RQ+++NLLSNA+KFT   G +  
Sbjct: 758 DQIVDMFRPQAQAKGIAFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTER-GHIRF 816

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V +   +    +I+D+G GI+E ++P +   F +G         G+GLGL I + +   
Sbjct: 817 DVAYR-SQVASFTIEDSGRGISEKDLPRIFEPFQRGEAEY--RMPGLGLGLTITRLLTQT 873

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRV 477
            GG+  + S+  +G      L  + V
Sbjct: 874 LGGEISVTSEKDKGTAFKVRLMLSAV 899


>gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1002

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 9/282 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRF 252
           A      ++  L                +   +  A++  +E ++RAE   E + +K+ F
Sbjct: 293 AGFLLMGLSVRLEYDERYRGFMGLIAGHISTAIANARAY-EEEKRRAETLAEVDRSKTVF 351

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            +++SHE RTPL  +LG  E               +E +  +HR+G  L  L+N +LD S
Sbjct: 352 FSNVSHEFRTPLTLMLGPVE---DVLASDRLEGEEREALERVHRNGLRLFKLVNTLLDFS 408

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R+EAGR + S     L  +             +  + +  +  P  + +W D +   +V+
Sbjct: 409 RLEAGRVQASYQPTDLASLTVGLASAFDSAVTKAGLRLVVECPPLPTPIWVDPEMWEKVV 468

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNL+SNA+KFT   G + V + W   +   +S++D G GI   E+P +   F +   A  
Sbjct: 469 LNLVSNALKFTFE-GEIGVALRWKGSQ-VELSVRDTGTGIPPEELPRIFERFHRVHGAKG 526

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + +G G+GL + Q ++  HGG     S L  G      LP 
Sbjct: 527 RSHEGSGIGLSLVQELVRLHGGTVRADSTLGRGSTFTVSLPA 568



 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 132/351 (37%), Gaps = 22/351 (6%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAG 191
             L   +     +A    AL          +      P +   +            ++  
Sbjct: 648 RRLLESRFTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFALLREFRAKPRTAAVPF 707

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA--EEENLAK 249
           +L +A +        L       L       +L+A +E    +    R+RA  E     +
Sbjct: 708 ILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVE---GVLRLARERAKRERLAQER 764

Query: 250 SRF----LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + F    +  +SH+LR PL AI   +  +      P   E  +  I  I  + +    +I
Sbjct: 765 ADFEQHLIGIVSHDLRNPLAAITLSAATLLRR---PELEERQRRPISRIFTAAERANRMI 821

Query: 306 NEILDL--SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            ++LD   +R+  G   +   A+ +  + ++ +  LQ  A      I      +  +VW 
Sbjct: 822 RDLLDFTQARL-GGGLPIQPKALDVHALSQQVVDELQ--AAHPGRVIELDRKGTGQAVW- 877

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     QV+ NL+SNA+ ++  G  V V V   +G G  + + ++G  I    +P +   
Sbjct: 878 DGDRTAQVLTNLISNALHYSRAGTPVRVRVFEEAGDGV-LEVHNDGAPIPAELLPRLFQP 936

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +G     +  + VGLGL I   I+  HGGQ  I S  +EG      +P 
Sbjct: 937 MQRGESEANNIGRSVGLGLYIVDHIVRAHGGQVEIHSVEKEGTTFTVRMPL 987


>gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 500

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E  + A++ N AKS FLASMSHE+RTP+ AI+G  E+   + +     
Sbjct: 163 ITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGKI 222

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +   HRS   L+ LI E LDL+RIEAG  +LS +  SL  +    I +   +A 
Sbjct: 223 PSQG--LQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAG 280

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E+  +         W D   +RQV+ N+L NA+KFT   G V VT+  T       
Sbjct: 281 EKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQ-GAVVVTLDVTHDSPEST 339

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I+D+G GI       V   F Q S    +   G GLGL I + ++    G   + 
Sbjct: 340 RVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLH 399

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDN 485
           S+  +G  V   LP TRV    +P D+
Sbjct: 400 SEPGKGTLVTIDLPLTRVSEPVLPADD 426


>gi|283781072|ref|YP_003371827.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283439525|gb|ADB17967.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 461

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 3/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +   +A++SHEL+TPL AI  ++E + L  +   + E    ++  I    + 
Sbjct: 225 ELRRLENLRRELVANVSHELKTPLAAIKAYAETLRLGAV--NDPEINLTFVHRIEEQAER 282

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI +IL ++R+EAG+       + L +++ EC+      AQ K +E+          
Sbjct: 283 LHELILDILQIARVEAGQEAFEICDVPLHELIEECLAQFADLAQSKRVELIGPPIDQEIF 342

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE+G+R ++ NL+ NA+K+T   GRV V     +     + ++D G GIAE +   V
Sbjct: 343 VRGDEEGVRTILNNLVDNAIKYTPADGRVTVRCTIETS-AVMLEVQDTGIGIAEKDQARV 401

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A      G GLGL I + +    GG   + S + +G      LP  
Sbjct: 402 FERFYRVDKARSREMGGTGLGLSIVKHLSQALGGSVGLDSTIGKGSTFRVHLPRA 456


>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1299

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 246  NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
               K RF  ++SHELRTPL  I+   E +         N   ++ +  I R+  +LL+L+
Sbjct: 793  EEMKYRFFTNISHELRTPLTLIIAPLEYLLK----KEENPDTRKQLKTIDRNAHNLLSLV 848

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            N++LD  RIE     L+    +L D++          ++EKNI       P    V AD 
Sbjct: 849  NQLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTADS 908

Query: 366  KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLT 422
              + +V+ NLLSNA KFT  GG V +        G+    I ++D+G GI   E   +  
Sbjct: 909  PKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPTEEQTHIFE 968

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-------NT 475
             F Q   +      G G+GL +A+  +  H G+  + S   +G      +P        +
Sbjct: 969  RFHQA--SSHKGNTGSGIGLNVAKEYVQMHHGKINVSSSPGKGSCFTVRIPVGNISHVPS 1026

Query: 476  RVLNFIPED 484
             +L   P+ 
Sbjct: 1027 PLLPTAPQQ 1035


>gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
 gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
          Length = 454

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             ++ FL+S+SHELRTPL  I G++++++   + P   E   +Y+  I      L +++ 
Sbjct: 222 EERNEFLSSISHELRTPLTYIKGYADIVQKRNLSP---EERNQYLSIILEETNRLSDMVK 278

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            + DL++I+   +++ + +I L D +++          EK + +      S+ ++ AD  
Sbjct: 279 NLFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVNCRESI-TISADAS 337

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q+I NLL NA+K++  G +  + +  T      I+IKD G GI+E E+P +   F +
Sbjct: 338 RLEQIIFNLLDNAIKYSTAGDKTTININRTKKH-VIINIKDTGRGISEEELPFIFNRFFR 396

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   A  G GLGL I + ++  HGG   + S+  +G E   + 
Sbjct: 397 VDKSRARALGGTGLGLAIVKELVHAHGGTISVCSREGDGTEFEIVF 442


>gi|171316802|ref|ZP_02906013.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171098060|gb|EDT42876.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1004

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 161/408 (39%), Gaps = 24/408 (5%)

Query: 69  NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128
             +    ++    V+   L L ++++        V      +L  +              
Sbjct: 360 AVVLTALAVAMATVWFVMLFLNRRILR--PGQDRVK----RILDSENLNRAMVATAPTGL 413

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
                 +   + ++       +  +     L   +   F     A   Q        +++
Sbjct: 414 VLLELDQGAVLLENDVARAFAARVSGGTPPLRERLHALFRQTAHARPAQ-----TERELT 468

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           +                 ++     IL    +    I   +  +    E  + AE  + A
Sbjct: 469 VETNDGERSDLLVNAVRAIYLGRDAILCNFVD----ITARKRLERNLAEASRAAESASRA 524

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPLNAILG  E+++   +    ++  ++ +     SG  LL ++N+I
Sbjct: 525 KSAFLATMSHEIRTPLNAILGSLELLDRTPL----SDAQRKRVQTALTSGTSLLGIVNDI 580

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LD+S+IEAG+  +   +  L  + R+   M +  A+ ++++    +DP+L      D   
Sbjct: 581 LDVSKIEAGQMTIEHVSFDLASLARDVAAMFEPVAKSRHLDFCCMVDPALAPRYIGDPTR 640

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSF 424
           +RQ+++NL+ NA+KFT   G V + V            I + D+G G++  +   +  +F
Sbjct: 641 IRQIMINLVGNAIKFT-ESGEVVLEVYLEDADDRNRIAIGVIDSGIGMSPEQQQNLFHAF 699

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q   +I     G GLGL + + +     G     S+   G   I  L
Sbjct: 700 TQADTSIARRFGGTGLGLALCKQLTDLMHGDIESISEPGVGSTFIVRL 747


>gi|146319012|ref|YP_001198724.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|146321222|ref|YP_001200933.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|253752079|ref|YP_003025220.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|253753904|ref|YP_003027045.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|253755221|ref|YP_003028361.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|145689818|gb|ABP90324.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|145692028|gb|ABP92533.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|251816368|emb|CAZ51999.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|251817685|emb|CAZ55433.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|251820150|emb|CAR46487.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|292558662|gb|ADE31663.1| Pas [Streptococcus suis GZ1]
 gi|319758446|gb|ADV70388.1| Signal transduction histidine kinase [Streptococcus suis JS14]
          Length = 449

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++E   +   + V   ++++ ++        +  F++++SHELRTPL ++  + E ++ 
Sbjct: 182 IRSESGLISGLVVVLHDMTEQAKEE-----RERRLFVSNVSHELRTPLTSVKSYLEALDE 236

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +      +   ++         ++ +I ++L LSRI+    ++    I+    V   +
Sbjct: 237 GALTESVAPS---FVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFIL 293

Query: 337 IMLQLRAQEKN---IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                     +     I +    S   V  D   M QV+ N+L+NA+K++  GG +  ++
Sbjct: 294 NRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSM 353

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T  +   +S+ D G GI + ++P +   F +   A   A+ G GLGL IA+ I+  H 
Sbjct: 354 KTTDSQ-LIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
           G    +S+   G     +LP ++ +
Sbjct: 413 GFIWAKSEYGHGSTFTIVLPYSKDI 437


>gi|94313888|ref|YP_587097.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357740|gb|ABF11828.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 951

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 19/320 (5%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLS 235
           QAI + ++      G+  + +         L  + + +L+    +      +   A+   
Sbjct: 297 QAIRNRYLTTTYQFGLSGSEIRRRAAPYVALVVTALALLALGYWRQRRQVAIRLQAEREL 356

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
               + AE+ N AKS FLA+MSHE+RTPL  +LG  E++ L  +    ++  ++ +G I 
Sbjct: 357 QRAHRLAEDANAAKSIFLAAMSHEMRTPLYGMLGTLELLSLTAL----DDRQRQDVGTIQ 412

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S   LL++I+++LD ++ E G+  L   A   +++V          A  K + +   + 
Sbjct: 413 TSSATLLSIIDDLLDYTKFEGGQLTLESVAFDPVELVEAVARSHAPLALRKGLALTCYVQ 472

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIKDN 408
             L  +  D   +RQ + N L+NA+KFT+  G V +     +            + + D 
Sbjct: 473 ADLPWLIGDPVRVRQALDNFLTNALKFTSE-GHVGIRAFRAASTPSDETTLCLVLEVLDT 531

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G++ G    +   F QG         G GLGL I + +    G   ++ S+L  G   
Sbjct: 532 GIGMSPGTQAQLFEPFVQGDATTARRFGGSGLGLSICRRLARRMGASIVVESELGRGSRF 591

Query: 469 IAILPNT------RVLNFIP 482
              +P         V   +P
Sbjct: 592 SFSVPLEIGEARQSVEPALP 611


>gi|224541343|ref|ZP_03681882.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525780|gb|EEF94885.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
          Length = 457

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 139/300 (46%), Gaps = 12/300 (4%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           +   +M+  ++ + +A ++   +S  T +T  L K N K+      KD++ +       +
Sbjct: 156 AIIFMMTGSIVFLIVADIIVKPISRLTRVTDELAKGNYKVRVNYEGKDEISSLYASFNQM 215

Query: 235 S-DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           +    ++        + +F++ +SHE +TPL AI GF+ +++ E +    +E  K+Y   
Sbjct: 216 AVRLAKQE-----TIRQQFISDVSHEFQTPLTAISGFATILKNENL---TDEQRKKYADI 267

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I  +   L +L   +L L+ ++     L ++   LI+ +   I M    A  K+IEI   
Sbjct: 268 ILFNSNRLSHLSKNMLQLTLLDGEDTALDKTEFPLIEQLNRVIEMEDNAALSKDIEIEFI 327

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  + ADE  M QV +NLLSNA+K+T   G V V V  T    Q +  +D G G++
Sbjct: 328 HPKKEFIIEADESRMEQVWINLLSNAIKYTNEHGVVTVEVRRTPTELQ-VRFEDTGVGMS 386

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  I  +   F +   +     +G GLGL I + I+  H  +  + S+   G      +P
Sbjct: 387 QDAISHIFERFYRQDKSRT--IEGNGLGLSIVKRIIDLHHYKIDVESQEDVGSVFTVYIP 444


>gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 14/275 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           ++     +        Q   D L    +         R ++ +   +KS FLA MSHE+R
Sbjct: 112 HLEERSERLERANRRLQEMADRLQETNKQ----LAIARDQSLQAVRSKSEFLAVMSHEIR 167

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG   ++    +    ++  +E     + S + LL ++N+ILD SR+++G+  L
Sbjct: 168 TPLNGILGMLSLLVDSKL----DDEQQELADTANDSAEALLLILNDILDFSRLDSGKMAL 223

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
            E   ++ ++    + ++   AQE ++E+   ID  +  S+ +D   +RQ++ N++ NAV
Sbjct: 224 EEQHFNVRELAESVLTLMAENAQESDLEVICDIDLDVPLSICSDVGRIRQILTNMIGNAV 283

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V + +     +         + D+G GI++     +   F Q   +      
Sbjct: 284 KFTPR-GEVGLGISRYEAKPGEFMLRFEVWDSGIGISKEAQMRLFKPFSQADSSTTRIYG 342

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I + ++   GG+  + S+   G      
Sbjct: 343 GTGLGLAICRKLVFAMGGEIGVDSEAGLGSRFWFT 377


>gi|226950175|ref|YP_002805266.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226840994|gb|ACO83660.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 702

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L +G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|168180831|ref|ZP_02615495.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182668359|gb|EDT80338.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 702

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L +G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|254829515|ref|ZP_05234202.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258601930|gb|EEW15255.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
          Length = 459

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVNPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRL-YEDTTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|153941037|ref|YP_001392041.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754687|ref|YP_001782369.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152936933|gb|ABS42431.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119899|gb|ACA43735.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|322807072|emb|CBZ04646.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 702

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L +G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|148380721|ref|YP_001255262.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931924|ref|YP_001385005.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937261|ref|YP_001388475.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|148290205|emb|CAL84324.1| putative sensory transduction histidine kinase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152927968|gb|ABS33468.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933175|gb|ABS38674.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 702

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L +G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|83943090|ref|ZP_00955550.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
 gi|83846098|gb|EAP83975.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
          Length = 685

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 127/264 (48%), Gaps = 27/264 (10%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE-------- 285
                ++ AE  +  K+ FL ++SHELRTPL  I G +  +      P            
Sbjct: 414 AEKRAQEAAEAADREKTEFLNNVSHELRTPLTVIFGRASFMRHSDKMPQAQRLMSALTAD 473

Query: 286 ------------TYKEYIGD----IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
                        Y+++I D    I  S QH++ L+ ++LD +++  G+ EL  +   L 
Sbjct: 474 GSGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLD 533

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +I R     LQ  A+ K + +    D   ++V AD+  ++Q++ NL++NA+KFT+  G++
Sbjct: 534 EIARTVTQELQPAAEAKGLTLTYAGDGPAATV-ADKVRVKQILYNLITNAIKFTSE-GKI 591

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           H+++  ++      S+ D G GIAE +   V   F Q   ++     G+GLGL I++ + 
Sbjct: 592 HLSMLHSAD-EIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLA 650

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             HGG   + SKL  G      LP
Sbjct: 651 ELHGGSLSLESKLGVGSTFSLTLP 674


>gi|257439802|ref|ZP_05615557.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|257197711|gb|EEU95995.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 130/305 (42%), Gaps = 14/305 (4%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                      ++       +     I   L +S V+ +    +  + I E    + L  
Sbjct: 146 TIWSIYDAALPAIILSCILMMGAAALIAGLLTRSLVQPILKMTDDLEHIQENVPYRELIP 205

Query: 237 ETR----KRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                   R   EN  K R  F A++SHEL+TPL +I G++E+IE     P +     E+
Sbjct: 206 FAESIHSDRLLRENNEKMRQDFTANVSHELKTPLTSISGYAELIETGIAKPADVP---EF 262

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEA---GRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              IH     ++ L+N+IL LS +++      +     + L+D+ ++C+   +L AQ   
Sbjct: 263 GRKIHVEASRMIQLVNDILQLSHLDSVSETHAQPDMETVDLLDVAKDCVERQKLNAQRSF 322

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +    +   + V  +   + ++  NL  NA+++   GG+V +    T      +++KD
Sbjct: 323 ISLTYLGES--ARVLGNRDQLDELCQNLCDNAIRYNRPGGKVQLITSCTRDGHCTLTVKD 380

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI +    +V   F +   +   A  G GLGL I + I   H  +  + S++  G  
Sbjct: 381 NGIGIPKDAQSSVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESEVNVGTT 440

Query: 468 VIAIL 472
           +  + 
Sbjct: 441 ITVVF 445


>gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 525

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +     +         I E   A+    +  +  E  +  +++F A++SHEL+TPL
Sbjct: 223 NAIIRDQEDNIIEVISIARDITERLRAEEKIKKQNEELE-YSKLRTQFFANISHELKTPL 281

Query: 265 NAILGFSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           N I    +++      +    + +    Y+  I  +G  LL L+N ++D++RIE   + L
Sbjct: 282 NLIFSSLQLLEFYLYNSQTYKDKDKINNYLKSIKNNGFRLLRLVNNLIDITRIEVDAFSL 341

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 ++ ++RE +  +    +EK  +     D   + +  D   + +VILNL+SNAVK
Sbjct: 342 HRGNFDIVKLIREIVNTVSDYLEEKERDFKFICDLDSAVIACDPFNIERVILNLISNAVK 401

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           F+A G ++ +T+         +S+KD G GI +     +   F Q   + K   +G G+G
Sbjct: 402 FSARGDQIILTLQKV-DEAISLSVKDTGIGIEKENQAIIFDKFRQVDQSFKKKREGSGIG 460

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           L + +SI+  HGG+  + S           LP   +   I E    S  
Sbjct: 461 LSLVKSIIEMHGGKIELESDYGYYSNFKVFLPFKTIDQEIVEKESYSPD 509


>gi|304312499|ref|YP_003812097.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301798232|emb|CBL46454.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 994

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+RFL +MSHE+RTP+NAI+GF++V+    + P      + Y+  + +S + LL L+N+I
Sbjct: 420 KTRFLGNMSHEIRTPMNAIIGFTDVLLQTELTP----KQRGYLTTVSQSSRTLLALLNDI 475

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD++++++G+  L  +  SL  +       L++ A+ K +         +   +  D   
Sbjct: 476 LDVTKLDSGKVVLESTDFSLRAVSELVDATLRVSAERKGLVFSCVYPDQVPEFFKGDSLR 535

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + QV+ NL+ NA+KFT   G V +  G+ SG+  +I + D G G+++ +  T+   F Q 
Sbjct: 536 IGQVLTNLVGNAIKFT-ESGEVRLLFGYESGQ-VHIQVSDTGIGMSQAQAATIFDPFTQA 593

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             +I     G GLG  I++ ++   GG+  + S+L +G      LP    +   P+  HE
Sbjct: 594 DASISRRFGGTGLGTTISRQLVDVMGGRIEVESELGKGSIFHVWLPLA--VGSKPDVAHE 651


>gi|229184210|ref|ZP_04311419.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
 gi|228599325|gb|EEK56936.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
          Length = 444

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 155/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 139 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 198

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 199 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 254

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 255 --TVDHLTEEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 312

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L    +EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 313 IWQLTPNVEEKKMQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATK 370

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q +        G GLGL I + ++  HGG 
Sbjct: 371 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGT 425

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 426 INIISKEGIGTTILIKLPL 444


>gi|227431460|ref|ZP_03913509.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352826|gb|EEJ43003.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 623

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 118/255 (46%), Gaps = 15/255 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F++++SHELRTPL ++  + + +    +   + E  + ++G +    Q ++
Sbjct: 374 QRIDSERRMFVSNVSHELRTPLTSVRSYVDALAEGAID--DPEMAQNFLGVVQDETQRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK---------NIEIFQK 353
            +IN++L+LSR++ G  E+    I+L  +    +    +  +           N  I ++
Sbjct: 432 RMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNILRE 491

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI 
Sbjct: 492 FTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTK-TRAILSISDQGLGIP 550

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +   F +   +   A+ G GLGL I++ ++    G+  + S   +G      L 
Sbjct: 551 RKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL- 609

Query: 474 NTRVLNFIPEDNHES 488
               ++  PED+ ++
Sbjct: 610 --AYVDEEPEDDWDA 622


>gi|117924203|ref|YP_864820.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607959|gb|ABK43414.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 894

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +  S+ K+++  + K+D+ A + + K + +  R  AE  N  KS FL  M+HE RTPLN 
Sbjct: 478 IRDSDGKVINFMSIKEDISARIALEKEI-EHARTAAETANQVKSEFLTHMTHEFRTPLNI 536

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G  ++I  E      ++     + +I     HL  +I +++DLSR+E+ ++ L E   
Sbjct: 537 IKGCVKLIRDE---NNLSDKQGRQLENILDGATHLATMIQDLVDLSRVESEQFHLHEEPC 593

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L  ++ E    ++L++QEK +    ++ P+L   +  D   +R  + NLL+NA+KFT  
Sbjct: 594 DLSHLLTELHDEMELKSQEKQLTFAVEVSPTLPPEIMLDAARLRHALTNLLTNAIKFTHE 653

Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
            G+V +   +           +  I D G GI   +I  +   F QG +   +   GVGL
Sbjct: 654 -GQVSLNCWYEGETKARTGTLHFVISDTGVGIPSEQIHAIFEPFNQGDMPAMTR-GGVGL 711

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           GL I + ++    G   +RS+   G      LP  +V        + +T
Sbjct: 712 GLTITKRLVEVMDGTIEVRSEPDHGSVFHIQLPCRKVWRPQEALANSAT 760


>gi|328869028|gb|EGG17406.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1323

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 17/252 (6%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                 +D   ++AE  N AK  FL ++SHE+RTP+N IL   +++E   +      T  
Sbjct: 395 RRKLMEADTALRKAEAVNEAKINFLTNVSHEVRTPINGILASVDILEKTNLDN----TQG 450

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           +++  +  S  +LL+LI +ILD S+IE+G+ +L     ++I ++ E + ++    +E+ +
Sbjct: 451 DFLVCVKDSANYLLDLITDILDFSKIESGKMQLQPVEFNMITMLEETMNIVYSTTKERGL 510

Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---------- 397
           E+   +DP++   V AD   ++Q++LN LSNA+KFT+  G+V + V + S          
Sbjct: 511 ELILFVDPAIPIIVVADHYRIKQILLNFLSNAIKFTST-GQVVIRVNFVSCTPSVANPSS 569

Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                   ++D+G G+ + +I  + T+F Q         QG GLGL I++ +    GG+ 
Sbjct: 570 TEFKISFEVEDSGIGLRQEQIEKLFTAFLQFDNHGSRNFQGTGLGLSISKKLCNMMGGEI 629

Query: 457 LIRSKLREGVEV 468
            ++S    G   
Sbjct: 630 TVKSTYGSGSTF 641


>gi|171780120|ref|ZP_02921024.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281468|gb|EDT46903.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 450

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+E+  +  F++++SHELRTPL ++  + E ++   +      +   +I         ++
Sbjct: 203 EKEDCERRLFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPS---FIKVSLDETNRII 259

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPS 357
            +I+++L+LSRI+    +L     +    +   +        Q     K  EI +     
Sbjct: 260 RMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVRDYPIK 319

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   M QV+ N+L+NA+K++  GG++ V++  T  +   ISI D G GI + ++
Sbjct: 320 SIWVEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQ-LIISISDEGLGIPKKDL 378

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           P +   F +   A   A+ G GLGL IA+ I+  H G    +S   +G     +LP  +
Sbjct: 379 PLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|89069582|ref|ZP_01156926.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           granulosus HTCC2516]
 gi|89044917|gb|EAR51007.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           granulosus HTCC2516]
          Length = 346

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 8/241 (3%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             EE    +  F+A++SHELRTPL A++GF E +        +    + ++G + +    
Sbjct: 108 ALEEAGQMRRDFVANVSHELRTPLTALVGFVETLR--GPAKDDAAARERFLGIMEKEAGR 165

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++L LSR+E        + + L D+VR+   + +  A    +E+  ++  +  S
Sbjct: 166 MARLVEDLLSLSRVEEEERLRPATPLPLADLVRDVAELFRPLAARNGLELVVRVPDAPFS 225

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAE 414
           V  D   +RQV+ NLL NA+K+   GGRV +T+          G G  ++++D+G GI  
Sbjct: 226 VPGDAGQVRQVLNNLLENAIKYGTGGGRVELTLSGPRQEPSLRGEGVRLAVRDHGEGIDS 285

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +  +   F +          G GLGL I + I+  H G+  I S+  +G     ILP 
Sbjct: 286 HHLARLTERFYRVDTHRSREVGGTGLGLAIVKHIVNRHRGRLRIESERGKGSRFTVILPT 345

Query: 475 T 475
            
Sbjct: 346 A 346


>gi|326386781|ref|ZP_08208402.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208834|gb|EGD59630.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1135

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 160/367 (43%), Gaps = 12/367 (3%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L+        +  +   A ++ A++        +   V       +   +  ++    ++
Sbjct: 566 LLPAALGRHVHSPLGHFAMVMTAVAA---LETAIVGGVTWRLSRFLAGDALASLRETMLI 622

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEE 244
            + +   L     +   + +   ++ +K      +  ++ IA            ++ AE 
Sbjct: 623 VLVILLFLGGVAGWIVVLVHQSRRAALKEADHHVSALEEEIAAHGATTRELHRAKEAAES 682

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+L ++SHE+R+PLN+I G+++++E             E    I RS +HL NL
Sbjct: 683 ANAAKSRYLLAVSHEIRSPLNSIYGYAQLMERGHDIAPA-----EAARIIRRSSEHLTNL 737

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
           +  +LD+S +E+G   +S   + L   + +   M   +AQ K I    +    + + V  
Sbjct: 738 VEGLLDISHVESGVLRISNDTVRLQPFLDQIASMFVPQAQAKGIAFDYRCTGHIPTYVRT 797

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K +RQ+++NLLSNA+KFT   G V  TV +        +I D G GIA  +   +   
Sbjct: 798 DQKRLRQILINLLSNAIKFTQA-GSVRFTVAFRPE-LATFTIADTGIGIAAEDRERIFAP 855

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +GS      ++G+GLGL I  +++   GG   + S   +G      L   +V+     
Sbjct: 856 FERGSHPEAQRQRGIGLGLAITAALVHILGGDIQVESVPGKGATFTVRLRLGQVMGAADP 915

Query: 484 DNHESTQ 490
              E  Q
Sbjct: 916 AAGEVAQ 922


>gi|197103756|ref|YP_002129133.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477176|gb|ACG76704.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 788

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ++G   +++ E +     +  +  + +    GQ L  L+N+++D 
Sbjct: 415 FLANMSHEIRTPLNGVMGVLHILKSEQL----TDEGRSLLDEALSCGQMLAELLNDVIDF 470

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IEAGR EL+   +    +V     +L+ +AQ K +++    D  +  V +D   +RQ 
Sbjct: 471 SKIEAGRLELACEPVDPKALVEGVARLLKPQAQAKGLQLIVDADARMGWVRSDPVRLRQA 530

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+ NAVKFT   G V +             ++D G GI E     +   F Q   + 
Sbjct: 531 LFNLVGNAVKFTEK-GHVVIRCRLADAGVLRFEVEDTGVGIPEAAQARLFQRFNQADAST 589

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
                G GLGL I + +     GQ    S    G     
Sbjct: 590 TRKFGGSGLGLAITKRLAEMMNGQVGFTSAEGRGSTFWL 628


>gi|313634988|gb|EFS01372.1| sensor protein kinase WalK [Listeria seeligeri FSL N1-067]
          Length = 610

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 374 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I    +  +++ I   + I      + 
Sbjct: 432 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDXXXMM-KKETIMFKRHIPKEPVIIE 490

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++ T+  
Sbjct: 491 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKYE-NEIEVSIADEGLGVPDEDLATIFD 549

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 550 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP----YSDLP 605

Query: 483 EDNHE 487
           ED+ E
Sbjct: 606 EDDWE 610


>gi|167748369|ref|ZP_02420496.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662]
 gi|317472096|ref|ZP_07931428.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|167652361|gb|EDR96490.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662]
 gi|316900500|gb|EFV22482.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 497

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 150/326 (46%), Gaps = 17/326 (5%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---ILSCQAEKDDLIA 226
           V  ++    I++  +L   +       L         + + N+     ++ + E  +L A
Sbjct: 181 VFFSIVAILILTSFLLSWFMYSEFIRPLKKLKEGADRIKEGNLDDDVEINSKDEIGELCA 240

Query: 227 ELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
                ++   E    R   E++N      ++++SH+L+TP+ AI G+ E I         
Sbjct: 241 SFNAMRAELKESIEARIIYEKQNR---DLISNISHDLKTPITAIKGYVEGIMDGV--ADT 295

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E    YI  I+     +  LINE+   S+I++     +   I +    ++C+  +    
Sbjct: 296 PEKMDRYIKTIYNKANDMDVLINELSLYSKIDSNIIPYNFRKIDINAYFKDCVDEIGSDL 355

Query: 344 QEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQ 401
           ++K +         +  +V AD + +++V+ N+++NA K+T    G+V +T+     R  
Sbjct: 356 EQKGMMFSYSNYCSANVAVMADPEQLKRVMNNIINNACKYTNKAKGKVSITLKEL-DRKI 414

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            ++IKDNG GI++ ++P +     +  ++  SA  G GLGL I + I+  HGG+    S+
Sbjct: 415 QVAIKDNGIGISKEDLPNIFRRTYRADMSRNSA-GGSGLGLSICKKIIEEHGGEIWAESR 473

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487
           LR G  +   L   ++ +   E+++E
Sbjct: 474 LRSGTTIFFTL--NKIADTQEEESNE 497


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 18/266 (6%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R   EE   AK +F  ++SHELRTPL  I    E I      P  +   +  +  + R+ 
Sbjct: 362 RHIEEEATAAKLQFFTNISHELRTPLTLIADPVEYI---IHDPNLSPQQRGMLQIVQRNV 418

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +++ G+ +L  S   L + +R+ + +    A++K+I +   +  S+
Sbjct: 419 AVLSRLVSEILDFRKVQNGKMQLHLSDFDLSECMRQWLGLFDTSARKKHITLQLHVPESI 478

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   + ++  NLLSNA+K+T  GG +       + +   I + DNG GIA+ ++P
Sbjct: 479 P-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADK-VGIMVSDNGCGIAQDDLP 536

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-- 476
            V   F Q   A      G G+GL + ++    H GQ  + S+  +G   +  +P  +  
Sbjct: 537 YVFDRFYQAGNAGH----GTGIGLALVKAFAELHHGQATVESEEGKGCTFVVSMPLRQEG 592

Query: 477 ---VLNFIPE----DNHESTQYKCYA 495
                   P+    +  E+T+    A
Sbjct: 593 KACAQEVQPDGPLIETEENTEIPNQA 618


>gi|301308087|ref|ZP_07214041.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300833557|gb|EFK64173.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 6/271 (2%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             Q  + +L  +++    L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E 
Sbjct: 807  YQLRQAELERKIQERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLER 866

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    +    KE +  I R+   L+  +NE+LDLS +  G          L   ++E  
Sbjct: 867  HSGSEESCGD-KETLRTISRNTNRLIRHVNELLDLSVLTRGVPSPHIVCADLSRFLKEIS 925

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                  A    I     I P +S  + D+  + QV+ NLLSNA K+T  GG V  +    
Sbjct: 926  ETFIPLADSYKIAFTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSALLE 985

Query: 397  ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               S     + I D+G GI    +P +   + +G        +  G+GL   + ++  H 
Sbjct: 986  QSSSDAVMTLRITDSGIGIPPESLPYIFDQYYKGESIAFRRSESSGIGLAYTKELLELHK 1045

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  S+L +G      LP +      PE+
Sbjct: 1046 ATIQCESELGKGSVFTVALPISE--EAYPEE 1074


>gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
 gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
          Length = 558

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 280 TERLEIELVREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 339

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                     + +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 340 EEQHP---CYKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 397 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 456 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 515

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 516 TSPGLGKGAMFTVSL 530


>gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
 gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
          Length = 1168

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA MSHE+RTP+N +LG   ++    +    N   + Y+     SG+ LL LIN+ILD 
Sbjct: 669 FLAMMSHEIRTPMNGVLGILSLLRDTNL----NPAQEIYVKTARESGRSLLELINDILDF 724

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S++EA R EL ++  +L   V+  + +    AQEK +E+  +    L   V  D   +RQ
Sbjct: 725 SKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSDLPRNVVGDAGRLRQ 784

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQ 426
           V+LN +SNA+KFT   G V V VG      Q      S+KD G GI   +   +   F  
Sbjct: 785 VLLNFVSNAIKFT-ELGSVEVNVGLEKSDPQKPVFRFSVKDTGIGIPAEKHDALFGDFVT 843

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              A      G GLGL I++ I     G+  + S    G      +P T     + ++  
Sbjct: 844 VDGASTKRYGGTGLGLAISKQIADLMEGEITLESLPGAGSTFHFFVPLTLSEETVGDEEE 903


>gi|116619022|ref|YP_819393.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097869|gb|ABJ63020.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 623

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 118/255 (46%), Gaps = 15/255 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F++++SHELRTPL ++  + + +    +   + E  + ++G +    Q ++
Sbjct: 374 QRIDSERRMFVSNVSHELRTPLTSVRSYVDALAEGAID--DPEMAQNFLGVVQDETQRMI 431

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK---------NIEIFQK 353
            +IN++L+LSR++ G  E+    I+L  +    +    +  +           N  I ++
Sbjct: 432 RMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNILRE 491

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI 
Sbjct: 492 FTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTK-TRAILSISDQGLGIP 550

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +   F +   +   A+ G GLGL I++ ++    G+  + S   +G      L 
Sbjct: 551 RKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL- 609

Query: 474 NTRVLNFIPEDNHES 488
               ++  PED+ ++
Sbjct: 610 --AYVDEEPEDDWDA 622


>gi|299143500|ref|ZP_07036580.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517985|gb|EFI41724.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 593

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            ++ +  F+A++SHEL+TP+  I  +SE +    M P   +  K ++  I+R    +  L
Sbjct: 367 LDVMRKEFVANVSHELKTPITTIRSYSETLLDSKMEP---DEVKHFVKIINRENTRMGRL 423

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++++L LS I+          I   DI+ + +  L +  +EKN  I  +I   + +++AD
Sbjct: 424 VSDLLQLSNIDYKTSNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISLEIPMDIRNIYAD 483

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + Q+++N++SNA+K+T  GG++ ++   ++     I ++DNG GI E ++P +   F
Sbjct: 484 RHALDQILMNIISNAIKYTDEGGKIKISAT-SNYFNVNIIVEDNGIGIPESDLPRIFERF 542

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +       A  G GLGL IA+ +  + GG   I SK +EG ++   L
Sbjct: 543 YRVEKGRSRAMGGTGLGLSIARELTLSMGGDIKIDSKFKEGTKISISL 590


>gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 965

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                KS F++++SHELRTPL AI G   +I    +G +  E  ++ +     + Q L +
Sbjct: 482 RIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGVV-PEGMRQMLSIAQANSQRLSH 540

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LIN++LD+ ++EAG+ +       L   + E +   Q  A ++ +++     P    V  
Sbjct: 541 LINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLLDCP-PVRVRV 599

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++QV+ N +SNAVK++   G V +           + + D G GIA      +   
Sbjct: 600 DNMRLQQVLANFISNAVKYSPPAGEVLLRAERR-DTRVRVEVSDQGSGIAAAFRDRIFAK 658

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q   +    + G GLGL I++ ++   GGQ    S + +G      LP 
Sbjct: 659 FSQADASDSREKGGTGLGLAISKELIERMGGQIGFDSVVGQGSTFWFELPL 709


>gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon]
 gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon]
          Length = 558

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 280 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 339

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 340 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 397 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 456 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 515

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 516 TSPGLGKGAMFTVSL 530


>gi|310780111|ref|YP_003968443.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749434|gb|ADO84095.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 780

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 7/256 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + + A+    ET++  E     K+ FLA++SHEL+TPL A++GF++++        ++
Sbjct: 523 INKRKKAEIKLLETKRELENALNIKTAFLANVSHELKTPLTAVMGFTKLLLKR----EDD 578

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ + +I  +G  L+  I+ ILDLS++EAG+ EL    I+L +++     +     +
Sbjct: 579 PKKQKLLENIQVAGDTLVTFIDNILDLSKLEAGKVELKYRRINLRNMIDNIERICNGLNK 638

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            +N+     +   +      DE  + +VILNL++NA KFT   G+V V    +     +I
Sbjct: 639 GRNVFFIMNVTEKVPKYFMGDEVRLTEVILNLVNNAFKFT-KFGKVEVKFD-SYNDKLFI 696

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SI D G GI + ++ ++   + Q  +     ++G GLGL I + I+    G+  ++SK +
Sbjct: 697 SITDTGMGIPQDKLSSIFERYHQLDLNENIEKKGFGLGLTIVKEIVDMMEGEIEVKSKHK 756

Query: 464 EGVEVIAILPNTRVLN 479
           E       +P  + L 
Sbjct: 757 EWTTFKITIPIKKKLQ 772


>gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 657

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 125/272 (45%), Gaps = 25/272 (9%)

Query: 225 IAELEVAKSLSDETRKRAEEE--------------NLAKSRFLASMSHELRTPLNAILGF 270
           I E + A +L  E   R  +               N  K  FLA +SHELR+PLN ILG+
Sbjct: 244 ITERKRASALLQEQNDRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNPILGW 303

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +++++       +    +  +  I R+ +    LI ++LD+SRI  G+  L+   + L  
Sbjct: 304 AKILQTSR---QDAAKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPVGLTF 360

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            ++  +  ++L A+ K+I+I    +P+   V  D   ++QV+ NLLSNA+KFT  GG+V 
Sbjct: 361 TIKAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQGGQVE 420

Query: 391 VTVGWTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           V +                IS+ D G GI+   +P V   F Q          G+GLGL 
Sbjct: 421 VRLERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLGLGLA 480

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           I + ++  HGG     S    +G       P 
Sbjct: 481 IVRHLVELHGGSIQAASPGEGQGATFTVKFPP 512


>gi|166366349|ref|YP_001658622.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166088722|dbj|BAG03430.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 665

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 9/235 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L++   +E++   +     L  
Sbjct: 417 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGEDLSDTEKREFLETANHETDRLTR 475

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R   +  AI +  ++ + +   QL A++K +E+  +I+ +L  +  
Sbjct: 476 LVNDVLDLSRLESSR-NYNLDAIDIGQLIEQTLRTYQLNARDKGLELSSEIEANLLPILG 534

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEI 417
               + QV+ NL+ N++KFT  GG+V +     S           + + D G GI   + 
Sbjct: 535 HYDLLLQVLTNLVGNSLKFTPAGGKVVIRAYKISRDNPQETPKIRVEVSDTGIGIDAEDQ 594

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +   F +         +G GLGL I ++I+  H  Q  + S++  G      L
Sbjct: 595 SAIFDRFYRVEN-RVHTLEGTGLGLSIVKNIIEKHYSQINLISEVGIGTTFWFDL 648


>gi|301053514|ref|YP_003791725.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375683|gb|ADK04587.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 357

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 145/351 (41%), Gaps = 16/351 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + +  + 
Sbjct: 13  LKVTGAIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILLWILI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  + Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---PEEKREHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +    G    + I+D+G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSGGTITIQLKEY-GTLVEVRIRDSGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +   A  G GLGL I + ++  H G+  + S+   G E    +P 
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFTVCIPK 353


>gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300075807|gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 556

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 6/300 (2%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                       A +                ++ +             A L         
Sbjct: 260 YAFQKLRDYPLFAAVGIDLKERLAPYYRERERTLMLAALLSVAVLVFNAVLLWLAGSLVR 319

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
           +R+ A + N AKSRFL++MSHE RTPLN +LG+S+ +  E    L      +Y   IH S
Sbjct: 320 SRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREE----LGESPLAQYAVAIHDS 375

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  LL+L+N IL+++ +E  R  +     ++ ++V + I     +AQ K + +  +I   
Sbjct: 376 GNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGED 435

Query: 358 LSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +  +   DE+ +++V+ NL+SNAV++T   GRV V V  +  +   + IKD G GIA  +
Sbjct: 436 VPQILVCDERKIQRVLDNLISNAVRYT-DHGRVMVEVERSGPQQLTMRIKDTGIGIAASQ 494

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   + + +++G GLGL IAQ ++   GGQ +++S+  +G      LP   
Sbjct: 495 QNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPLQE 554


>gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 786

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 9/290 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +         +       +   E     + RAE  N AKS FLA+MSHELRTP
Sbjct: 480 ERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEFLANMSHELRTP 539

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+GF+E++E E  G L +  Y +Y  DI +SG +LL++I++IL +SRIEA R +L  
Sbjct: 540 LNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVR 599

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L   +   + ++   A  K++ I  ++  +L  V ADE+ ++Q++LN++ NAVKFT
Sbjct: 600 RDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQILLNIIQNAVKFT 658

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GRV +  G +     ++ I D G GI +  I  +   F Q    +  + +G GLGL 
Sbjct: 659 PERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTRSYKGSGLGLA 717

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQ 490
           IA+S    HGG   IRS+   G  V+  LP     R+     E   ++ Q
Sbjct: 718 IARSTAELHGGSLRIRSEEGIGTLVLVRLPMPTPERLAEVAREAERDTLQ 767


>gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 523

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            FLA+MSHE+RTPLN ++G  + +    + P       E +  I  SG  L  L+++ILD
Sbjct: 150 DFLANMSHEVRTPLNGVIGIVDALSRTALDP----AQTEMVNLIRASGVTLERLVSDILD 205

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369
           +S+IEAG   L      L + +   + ++++RA EK +      D     V+  D   +R
Sbjct: 206 VSKIEAGELTLETRPFDLDEALDAPLDVMRVRADEKGLRFDVIRDDEARGVFVGDSTRIR 265

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFG 425
           QVI NLLSNAVKFT  GG V V +             + I+D G G      P +   F 
Sbjct: 266 QVIGNLLSNAVKFTHQGG-VSVRIALDEDHDSLTHLIVDIQDTGVGFNAEHAPRLFDRFS 324

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           Q    I     G GLGL I ++++   GG+    S   +G      +P  R
Sbjct: 325 QADATITRRFGGTGLGLSICRALVEMMGGRITAESTPGQGSRFRIEIPLAR 375


>gi|223986669|ref|ZP_03636659.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
 gi|223961355|gb|EEF65877.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
          Length = 879

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 8/262 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A+    +    A++ N AK  FL+ MSHE+RTP+NAI+G + +           E   + 
Sbjct: 336 AQQNLRDALTLAQKANDAKKDFLSRMSHEIRTPMNAIIGMATIAAANIHDQNRVE---DC 392

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  S +HLL+LIN++LD+S+IE G+  +S        +++    ++  +A+ +N   
Sbjct: 393 LAKIGFSSKHLLSLINDVLDMSKIEEGKLTMSHEPFEFRQLIQSITSIIDSQARSRNQNF 452

Query: 351 F-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISI 405
               +D +   V  D   + Q++LNLLSNAVKFT   G++ + V       +      ++
Sbjct: 453 EATVVDFTEEMVVGDAMRVNQILLNLLSNAVKFTPENGKIRLEVRQIGIRNNQVRMRFTV 512

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G G+ E  +  +   F Q    I     G GLG+ I +++++  GG   + SK  EG
Sbjct: 513 SDTGIGMNENFLQRLYMPFEQADSMISQRFGGTGLGMSITKNLVSLLGGTIQVFSKENEG 572

Query: 466 VEVIAILPNTRVLNFIPEDNHE 487
              I  L   R+         E
Sbjct: 573 TTFIVELSFERLDAPALASTAE 594


>gi|83954943|ref|ZP_00963621.1| histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83840669|gb|EAP79841.1| histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 463

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 166/445 (37%), Gaps = 24/445 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
             +  +     R      +       +  ++ +  +   +          ++ + + ++ 
Sbjct: 17  SRLRDYALVGSRAFGQRAIIYTAAIALAGYYYELRVALFFFFAIALCEIYDIVVLRYILR 76

Query: 96  S-DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +   K  ++      + +          L  +                  L+ A   +A+
Sbjct: 77  NTRSKTLKIRKSLFHIYMTTALSATTIALFCIAIAIQQGVGNSHFLPLFLLISASIFAAM 136

Query: 155 SNFMLPYAVFLSFFPVVVAL-------STQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +N    Y +       + A+          A  S+              L F   +    
Sbjct: 137 NNHQFLYVLGFRLAIYIGAILYIPIRDVVVARPSLDSEIWLNLFTALFVLGFVFELARTF 196

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            K    ++     K+ L  + E   +L           + AK+RFL+++SHELRTPL +I
Sbjct: 197 IKGYSALM-----KNRLALQTENKNAL---------AASEAKTRFLSTVSHELRTPLTSI 242

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G  ++I   + G +  +     +    R+   L +L+ ++L L   + G++ L    + 
Sbjct: 243 RGALDLINAGSAGEV-PDKMSRLLDIATRNSNRLGDLVGDLLLLQSADVGKFSLDLGNVD 301

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L ++V       Q  A    + +   +      V  D+K + QVI+NLLSNA KF+  GG
Sbjct: 302 LAEVVNTAAHSFQPYASRFGVAVEVNVAADQPIVRGDKKRLDQVIVNLLSNAAKFSEAGG 361

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V +         IS+ D G GI EG    +   FGQ   + +   QG GLGL I++ 
Sbjct: 362 TIRVGLKREDEN-LVISVADQGIGIPEGSESVIFEEFGQIDSSDQRKFQGTGLGLSISKR 420

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           I+  HGG    +SKL  G     +L
Sbjct: 421 IVDAHGGSIAYKSKLGVGTTFCVVL 445


>gi|256838865|ref|ZP_05544375.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739784|gb|EEU53108.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1369

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 6/271 (2%)

Query: 217  CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             Q  + +L  +++    L  + ++  EE++  K+RF  ++SHELRTPL  I G +E +E 
Sbjct: 807  YQLRQAELERKIQERTRLLKQAKQELEEKDALKTRFFMNVSHELRTPLTIIKGLTEDLER 866

Query: 277  ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +    +    KE +  I R+   L+  +NE+LDLS +  G          L   ++E  
Sbjct: 867  HSGSEESCGD-KETLRTISRNTNRLIRHVNELLDLSVLTRGVPSPHIVCADLSRFLKEIS 925

Query: 337  IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                  A    I     I P +S  + D+  + QV+ NLLSNA K+T  GG V  +    
Sbjct: 926  ETFIPLADSYKIAFTYSIAPDISIAYFDKNILEQVLYNLLSNAFKYTPDGGSVSFSALLE 985

Query: 397  ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
               S     + I D+G GI    +P +   + +G        +  G+GL   + ++  H 
Sbjct: 986  QSSSDAVMTLRITDSGIGIPPESLPYIFDQYYKGESIAFRRSESSGIGLAYTKELLELHK 1045

Query: 454  GQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
                  S+L +G      LP +      PE+
Sbjct: 1046 ATIQCESELGKGSVFTVALPISE--EAYPEE 1074


>gi|186475127|ref|YP_001856597.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191586|gb|ACC69551.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1485

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 10/250 (4%)

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
              +        R  AE  + AK  FLA MSHE+RTP+N +LG  EV+E   +    +   
Sbjct: 826  ERLRADELAHARDLAEAASRAKDDFLAMMSHEIRTPMNGVLGLVEVLERTRL----DADQ 881

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             E +G IH S   LL +++++LD S+IEAGR  +    I L D+V   + +L  RA EK 
Sbjct: 882  GEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKG 941

Query: 348  IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQY 402
            +++   +DP ++ ++  D   +RQ++ NLL NA+KFT   G V V V        G+   
Sbjct: 942  LKVRVDVDPQVAATLRGDSVRLRQILFNLLGNAIKFTPQ-GEVDVQVQVAEQNASGQTVE 1000

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            I++ D G GIA      +   F Q   +      G GLGL I + ++A  GG   + S  
Sbjct: 1001 ITVDDTGIGIAPDVQARLFEPFVQAESSTTRRFGGTGLGLTICRKLVALMGGTLSLYSTP 1060

Query: 463  REGVEVIAIL 472
             EG  +   L
Sbjct: 1061 GEGTRMTLRL 1070


>gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 948

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 14/266 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + ++        E +  AE +  AK  FLA MSHE+RTP+N ILG  E++    + P   
Sbjct: 365 VTDVHRQAEALHEAKDAAEADLRAKEGFLAMMSHEIRTPMNGILGLVELLRNTALTP--- 421

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +   H SG  L  ++++ILD +RIEAGR  +  + + L +++     +L  +AQ
Sbjct: 422 -AQHRMLTLAHESGHALAQILDDILDYARIEAGRLAIVPAPVDLRELLDSVSSLLLPQAQ 480

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K +++   +   +  +V AD   MRQ++ NLL NA+KFT   G V +     +  G   
Sbjct: 481 QKGLQLRVHVSADVPATVRADGIRMRQILFNLLGNAIKFTDR-GSVTLHASAETSDGETA 539

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GIA  ++P + T F QG  ++     G GLGL I++S+ A  GG  ++ 
Sbjct: 540 ALLLEVQDTGIGIASADMPRLFTPFMQGERSVTRRMGGTGLGLAISRSLAAMMGGSLVLT 599

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485
           S+   G      +P       +PE++
Sbjct: 600 SEEGTGTTASLRVPC----PVMPEES 621


>gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 458

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 162/451 (35%), Gaps = 12/451 (2%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92
           F   +  L    +          +  VA  G       +  +W+  +L      +     
Sbjct: 7   FKLFVRLLFAAGVVFAIVTAFPDLPAVAVGGILLVWAALMALWTAHSLQRILGPMQASAN 66

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            M    +      +R +  + Q        +   +E    +   L     +     +++ 
Sbjct: 67  SMIEGEQKPLTTGFRDFDGLAQALSTASKRVQGSLETAAESRRQLEALLDSMQDAVVAVD 126

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY--ITYHLFKS 210
           A                +     T A+   H L  ++                   + +S
Sbjct: 127 AAGRIQWTNERMQKMMLLPGGYFTGAVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRS 186

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
              +     E +        A ++  +   R EE    +  F+A++SHELRTPL +I G+
Sbjct: 187 TSLVPGRIYEVNASPMPGGGAVAVLHD-VTRIEEVERTQKDFVANVSHELRTPLTSITGY 245

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E +     G   +   +E++G I ++   +  L  ++L ++R+EA   ELS + +    
Sbjct: 246 VETLLDHEAGI--SPQGREFLGTILKNATRMNRLTEDLLVMARVEAATVELSPAPVPADL 303

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI----G 386
           +VRE +  ++   QE    +          V+AD   + QV+ NL+ NA+K+       G
Sbjct: 304 LVREAVAGMKGLVQENEGVLEIGTITD-CQVFADHDAVMQVLSNLIENAIKYGQPKAGGG 362

Query: 387 GRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            RV ++    +        S++D G GIA   +  +   F +          G GLGL I
Sbjct: 363 TRVVISAREVAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVDKTRSRESGGTGLGLSI 422

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + ++   GG     S+L EG   +  LP  
Sbjct: 423 VRHMVQAQGGTIRAESELGEGSCFLFTLPKA 453


>gi|266623114|ref|ZP_06116049.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM
           13479]
 gi|288865122|gb|EFC97420.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 167/445 (37%), Gaps = 12/445 (2%)

Query: 33  FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92
           F R    L++         +    +    +  +F    I  + S + L ++  +      
Sbjct: 220 FFRRRERLYLTFSLTCLAAVLRLGMESNALVQYFLPGGIGFLLSRVFLLLFTIHSLCICL 279

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            M     I      RI+ ++     GL    + ++           +     + I L+  
Sbjct: 280 FMVQAFSIQLGRCLRIFYILC---FGLPMAGICVLPYAQAVTGMFLVMIPYGISIFLAFR 336

Query: 153 ALSNFMLPYAVFLSFFPVVVAL---STQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           + +    PY +   F  V   +    T+ +    +    +   +   LS    ++    +
Sbjct: 337 SGNIGRDPYRLLYLFSMVTFVIYGPLTKTLFEGDMFLPGIVPNMFLILSQCVMLSRSYAQ 396

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           ++ ++    A  +DL+   +   +  +   ++      A    ++++SH+L+TPL  +  
Sbjct: 397 AHEEVERVNANLEDLV---KQRTAQLNSANEQLAASQSALREMISNISHDLKTPLTVLNN 453

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + E++  ET+   + +   EY+G  +     L  LI+ + +++R+E G        +  +
Sbjct: 454 YLELLGDETV-ASSEQERTEYLGIAYHKNLDLQRLIHNLFEVTRMEGGTVSYRLEWVLAL 512

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ E        A    +    + D +L  +  D   +  V+ NL+ NA++ T  GG +
Sbjct: 513 PLMEEAERKYGDLAGGMGLFFTAEADDAL-KLKIDRNKIWSVLDNLVYNALRHTPEGGSI 571

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +    G    +++ D G GI  G +P +   F + S      +   GLGL I ++  
Sbjct: 572 ALGIKRR-GDRAVLTVADTGEGIDAGHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTA 630

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
              GG   + S   +G       P 
Sbjct: 631 EAMGGTVEVESVPGKGTVFTLTFPA 655


>gi|229083887|ref|ZP_04216194.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
 gi|228699408|gb|EEL52086.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
          Length = 424

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 21/317 (6%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           +        +       +   +    L+ +L   L    + T  + + ++ +       D
Sbjct: 114 MIDGLTKQFIIAGAITFILTVITIFLLSRLLTKPLLRMKHATEKMSRGDLSVSLTSTRND 173

Query: 223 DLIAELEVAKSLSDETRKRAEEEN------LAKSRFLASMSHELRTPLNAILGFSEVIEL 276
           ++    E  ++L           N        +S FLAS++HELRTPL  + G++++   
Sbjct: 174 EIGELAESIQTL----------ANDLHYMKKERSEFLASVAHELRTPLTYVRGYADIALK 223

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           +   P   +  + Y+  I      + NL+ ++  L+++E   + +  + + + D +   +
Sbjct: 224 DHTSP---KQRQRYLSIIKDEADSITNLVQDLFLLAQMEQHNFSIETAKVQVEDFLSRIV 280

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             + +  + K+I +      SL S+  DE+   QVI+N+L+NA   +A   ++ + V   
Sbjct: 281 TKVNIMYEIKHIRVSFTCPSSL-SIALDEQRFEQVIINILNNAYAHSAEHSQIFIFVT-V 338

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 ISI+D G GI E +IP +   F +   A   A  G GLGL I + I+  HGG  
Sbjct: 339 HQTHIEISIQDAGEGIPEKDIPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNI 398

Query: 457 LIRSKLREGVEVIAILP 473
            + S++  G      LP
Sbjct: 399 TVTSEVDHGSCFTISLP 415


>gi|332880362|ref|ZP_08448040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681807|gb|EGJ54726.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1209

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 138/337 (40%), Gaps = 19/337 (5%)

Query: 162  AVFLSFFPVVVALSTQAIMSMHVLDISL-AGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            A + S  P    L  QA M       +    +      + T+  Y ++   +  L+    
Sbjct: 742  ASYTSLTPGTYTLQVQAAMGSTPWGAAAEWQITVEPPLWKTWWAYAIY--LIAALALLYY 799

Query: 221  KDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              +L    + ++ ++++    R++ +  +  K RF  ++SHELRTPL  I+   E++  +
Sbjct: 800  IIELYIADKRSRMMAEQENLKRQKEQHLDELKFRFFTNISHELRTPLALIITPLELLIRK 859

Query: 278  TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                      K  +  I  + + LL L+N++LD  R+E    +L  S + +   + + + 
Sbjct: 860  AGDS----ALKSELEKILGNARDLLRLVNQLLDFRRLEQKGEQLKLSIVQIKPFIEDNVN 915

Query: 338  MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                 A E++I +  +           D + M +V+ NLLSNA+KFT  GG + V  GW 
Sbjct: 916  HFGPLAHERHIGLSCECAFGQEDLFRLDAEKMTRVLNNLLSNAMKFTPEGGFITVQAGWQ 975

Query: 397  SG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSI 448
                      G  I++ D G GI   ++  +   F Q           G G+GL + +  
Sbjct: 976  ESSPAGEGPNGIRITVSDTGIGIPAEDLKNIFVRFYQSEGTQSHPVNTGSGIGLHLVKGY 1035

Query: 449  MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            M  H G+  + S   +G     +LP         +  
Sbjct: 1036 MDLHNGEITVESTPGKGTRFTLLLPAQPPQTAASDSQ 1072


>gi|300864857|ref|ZP_07109705.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
 gi|300337150|emb|CBN54855.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
          Length = 702

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 31/257 (12%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L+    +E++   +     L  
Sbjct: 443 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-HEYGEDLSEAERREFLETANHETDRLTR 501

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R       + +   V + +   QL A++K IE+ Q++DP L +V  
Sbjct: 502 LVNDVLDLSRLESCRI-YHFDGVDIAQAVEQTLRTYQLNAKDKGIELIQELDPDLPAVLG 560

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------------------------- 397
               + QV  NL+ NA+KFT  GG++ +                                
Sbjct: 561 HYDLLLQVFANLVGNALKFTHSGGKIAIRASQLDVEVREDKYEVANEESSPGNYSLSHAV 620

Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +   I I D G GI   +   +   F +         +G GLGL I ++I+  H  +
Sbjct: 621 PPSKLVRIEISDTGIGIDAEDQEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIIDKHHTK 679

Query: 456 FLIRSKLREGVEVIAIL 472
             + S++  G      L
Sbjct: 680 VHLVSEVGVGTTFWFDL 696


>gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 953

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   + R  AE  N AKS FLA+MSHE+RTPLN +LG  +++E   +     
Sbjct: 545 ITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS--- 601

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +    +S ++LL +IN+ILD +R+ +     +         +      L   A+
Sbjct: 602 -DQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 660

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K+I I   I P++  +   D    RQ++ NL+ NAVKFT   G V +++          
Sbjct: 661 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQ-GTVRISLHGLERHSPAG 719

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D+G GI +  +  V   F Q   + +    G GLGL I +S++   GG   
Sbjct: 720 ALRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIA 779

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           I S+   G  +   L   R+    PE   E
Sbjct: 780 IDSEEGAGTTIACTLMFGRI-EKTPEGVTE 808


>gi|119509715|ref|ZP_01628860.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119465581|gb|EAW46473.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 648

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +  E    L+ E  ++++  ++     L  
Sbjct: 392 ELNEAKSQFISNVSHELRTPLFNIKSFIETL-HEYGEDLSLEQRQDFLQTVNNETDRLTR 450

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR   +   + L   + + +   QL A++K I + Q++   L  V  
Sbjct: 451 LVNDVLDLSKLESGR-SYNFGGVDLAQAIEQTLRTYQLNARDKGITLIQEVPLDLPLVLG 509

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------GQYISIKDNGPGIAEG 415
           +   + QV+ NL+ N++KF+  GG+V +       +           + I D G GIA  
Sbjct: 510 NYDLLLQVLANLVGNSLKFSHSGGQVAIRAYQLDTKPNSHNQQAHVRVEISDTGIGIAPE 569

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   +   F +         +G GLGL I ++IM  H  Q  + S++  G      L
Sbjct: 570 DQQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIMERHRSQMHLVSEVGVGTTFWFDL 625


>gi|103486611|ref|YP_616172.1| periplasmic sensor signal transduction histidine kinase
           [Sphingopyxis alaskensis RB2256]
 gi|98976688|gb|ABF52839.1| periplasmic sensor signal transduction histidine kinase
           [Sphingopyxis alaskensis RB2256]
          Length = 482

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 2/237 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R   +  +  +S F+A+ SHELRTPL AI+G+ E ++    G  +  T + ++  I R  
Sbjct: 245 RSAIDAADRMRSDFVANASHELRTPLAAIIGYVETLQD-MNGEDDGATRRRFLSIIEREA 303

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + +  L+ ++L +SR+EA R+    + + L  IVR  I  LQ     +  +I   +    
Sbjct: 304 RRMQQLVIDLLSISRVEADRFRRPTAEVDLAAIVRHTITQLQDSESARPKDIVAALGTEA 363

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  DE  + Q+  N++SNA+K+   G  V V +    G    +S+ D G GIA   IP
Sbjct: 364 MPMLGDEAQLGQLAHNIISNALKYGRPGTPVTVELLR-EGARVRLSVSDEGDGIAPDHIP 422

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +   A   +  G GLGL I + I   H GQ  I S+  +G  V    P  
Sbjct: 423 RLTERFYRVDEARSRSVGGTGLGLAIVKHISERHQGQLHIDSEPGKGTSVSISFPLA 479


>gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 874

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 21/265 (7%)

Query: 240 KRAEEE--------------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           +RAE                +  K+ F++++SHELRTPL +I G   ++    +G    E
Sbjct: 612 RRAERLFIVVVRDITERKRVDRMKNEFISTVSHELRTPLTSITGALSLLLNGAVGQ-PTE 670

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
            +  ++   +++ Q L  LIN++LD+ +I AG  + S S   ++ +V + I   ++  Q+
Sbjct: 671 EFSRFLQIAYKNSQRLALLINDLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQ 730

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             +E         S +  D    +Q++ N LSNA KF+  G  V ++V         IS+
Sbjct: 731 HEVEYKIIHREDASLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRRE-NYVRISV 789

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D GPGI       +   F Q   + +  + G GLGL I++ +     G+    S++ +G
Sbjct: 790 TDRGPGIPPEFYTRIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKG 849

Query: 466 VEVIAILPNTR-----VLNFIPEDN 485
                 LP         +   PE+ 
Sbjct: 850 ATFYVELPLASGSIQDAVAPEPEEA 874


>gi|237801067|ref|ZP_04589528.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023924|gb|EGI03981.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1026

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 691 ISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 750

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 751 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGLA 806

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++ +   +D  + + V  D    +Q++ NL+SNA+KFT  G  ++ +  G T+    
Sbjct: 807 RQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQDGQVKISLQAGDTAAPQQ 866

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++ ++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 867 LHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNLQL 926

Query: 459 RSKLREGVEVI 469
            S   +G  V 
Sbjct: 927 DSAPGQGTRVS 937


>gi|271969947|ref|YP_003344143.1| histidine kinase [Streptosporangium roseum DSM 43021]
 gi|270513122|gb|ACZ91400.1| Histidine kinase [Streptosporangium roseum DSM 43021]
          Length = 593

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 137/352 (38%), Gaps = 14/352 (3%)

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
             +   E L  Y +   L+ L  SA +      +  ++       L     +++ V+  +
Sbjct: 256 LASARREQLRAYVAPAALLYLGSSAQAPSTELPSAGVARIAGTALLVLLFAVAVSVVVAT 315

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
               L   +   T     + + +           ++    E    +S+      E     
Sbjct: 316 ---RLVRPVRALTEAAQRMGQGDSSARVAVTATGEVGELSEAFNRMSEH----LERMEAQ 368

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +   ++ +SHELRTPL+ + G+ E  +         E   E I  +      L ++++++
Sbjct: 369 RKAMVSDVSHELRTPLSNLRGWMEAAQDGV-----AELDAELIASLVEEIMLLQHIVDDL 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            +L+  +AG+  L    +++ D++ +     + RA    + +          + AD   +
Sbjct: 424 QELALADAGKLRLHPEPVNVADLLDQVATAHRGRADSAGLTLTADTAGD-PGLLADPVRL 482

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ + NL+SNAV +T  GGR+ +  G  +     I + D G GIA   +P V   F +  
Sbjct: 483 RQAVGNLVSNAVHYTPPGGRIALR-GRLADGHVLIEVADTGVGIAPEHLPRVFDRFWREE 541

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +      G GLGL I +++   H G   + S   EG      LP    L  
Sbjct: 542 KSRNRRTGGSGLGLAIVRNLAEAHHGTVSVASTPGEGAVFTLRLPVEPDLPT 593


>gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4]
 gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4]
          Length = 1298

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 6/249 (2%)

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            EE +  K  F  ++SHELRTPL  IL          +  +++E+ K+ +  I+R+   LL
Sbjct: 804  EELDQLKYSFFTNISHELRTPLTLILTPL----DSILKKVDDESLKKQLNGIYRNANELL 859

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
             L+N++LD  ++E     L  S  S+ D +       Q  A    IE+  + +      +
Sbjct: 860  KLVNQLLDFRKLEMKGETLELSYCSINDFIEVTAFSFQEMAANNGIELVSECEDDNIYAY 919

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D+  M+++I NLLSNA+KFT  GGR+ +     T  +   I + D G GI E ++  + 
Sbjct: 920  VDKDKMQKIINNLLSNAIKFTPSGGRILLKAMKDTDEQMFVIQVSDTGIGIPEVDVSQIF 979

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
              F Q     KS   G G+GL + +  +  H G   + S+L EG      +P        
Sbjct: 980  DRFYQV-KKQKSINTGSGIGLHLVKEYVELHNGTIEVESRLNEGSLFTVSIPIDLQSADE 1038

Query: 482  PEDNHESTQ 490
             +   ES  
Sbjct: 1039 IQSETESID 1047


>gi|83943561|ref|ZP_00956020.1| two-component sensor [Sulfitobacter sp. EE-36]
 gi|83845793|gb|EAP83671.1| two-component sensor [Sulfitobacter sp. EE-36]
          Length = 463

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 166/445 (37%), Gaps = 24/445 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
             +  +     R      +       +  ++ +  +   +          ++ + + ++ 
Sbjct: 17  SRLRDYALVGSRAFGQRAIIYTAAIALAGYYYELRVALFFFFAIGLCEIYDIVVLRYILR 76

Query: 96  S-DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +   K  ++      + +          L  +                  L+ A   +A+
Sbjct: 77  NTRSKTLKIRKSLFHIYMTTALSATTIALFCISIAIQQGVGNSHFLPLFLLISASIFAAM 136

Query: 155 SNFMLPYAVFLSFFPVVVAL-------STQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           +N    Y +       + A+          A  S+              L F   +    
Sbjct: 137 NNHQFLYVLGFRLAIYIGAILYIPIRDVVVARPSLDSEIWLNLFTALFVLGFVFELARTF 196

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            K    ++     K+ L  + E   +L           + AK+RFL+++SHELRTPL +I
Sbjct: 197 IKGYSALM-----KNRLALQTENKNAL---------AASEAKTRFLSTVSHELRTPLTSI 242

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G  ++I   + G +  +     +    R+   L +L+ ++L L   + G++ L    + 
Sbjct: 243 RGALDLINAGSAGEV-PDKMSRLLDIATRNSNRLGDLVGDLLLLQSADVGKFSLDLGNVD 301

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L ++V       Q  A    + +   +      V  D+K + QVI+NLLSNA KF+  GG
Sbjct: 302 LAEVVNTAAHSFQPYASRFGVAVEINVAADQPIVRGDKKRLDQVIVNLLSNAAKFSEAGG 361

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V +         IS+ D G GI EG    +   FGQ   + +   QG GLGL I++ 
Sbjct: 362 TIRVGLKREDEN-LVISVADQGIGIPEGSESVIFEEFGQIDSSDQRKFQGTGLGLSISKR 420

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           I+  HGG    +SKL  G     +L
Sbjct: 421 IVDAHGGSIAYKSKLGVGTTFCVVL 445


>gi|309792572|ref|ZP_07687034.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225386|gb|EFO79152.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 720

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                    +     ++    +    I   L   N       + +D  + E    +  S 
Sbjct: 421 SPAAQAWRAEAQCGAVVVIPFAPSEEIVGGLVAVNRLEAPDFSPQDVELLETLTNQIASA 480

Query: 237 ETRKRA----EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
             R R     +  N AKS FLASMSHELRTPLNAILGF+  + +   GPL  E+ +  + 
Sbjct: 481 YARARLTRDLQRANQAKSAFLASMSHELRTPLNAILGFTGTLLMRLPGPLT-ESQERQLS 539

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I RS QHLL LIN+ILDL+RIE+GR EL  + +   +++ E I  L+  A+++ ++   
Sbjct: 540 TIKRSAQHLLALINDILDLARIESGRLELRLTTVLAQEVLHEVIAELRPLAEQRGLQFQM 599

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
               S   +  D + +RQ+++NL++NA+KFT + G VHV++     +     ++D G GI
Sbjct: 600 DAPESPLPLTTDLRILRQILINLVNNAIKFTDV-GEVHVSL-RCETQALLFVVRDTGIGI 657

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   +   FG+ +       +G GLGL +A  +    GG   ++S+   G      L
Sbjct: 658 KPEDQARLFADFGRINSVDVHTREGTGLGLRLAYRLAEALGGTVTLQSEYGVGSTFTLRL 717

Query: 473 P 473
           P
Sbjct: 718 P 718


>gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 709

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 9/278 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            + +   +       D I +    +    E  ++ E     +++F+A+ SHEL+TP+  +
Sbjct: 441 IRDHRGQIVAAVALVDDITQQRQLEQQRSELLRQIESALELRNQFIATASHELKTPITLL 500

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+++V+   +   +     +  +  I+R    +  LIN++LD+S+IEAG+ EL    + 
Sbjct: 501 KGYAQVLMDRSREGV----LRRPLEIINRQVDRMSELINDLLDVSKIEAGKLELVLRKVE 556

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L D VRE ++  +  A    IE+          V  D   ++QV+ N +SNAVK++    
Sbjct: 557 LTDAVREVVMDQREAASGFEIELL---AAEPVWVLGDRNRLQQVVANFISNAVKYSGNSR 613

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           RV V V    G    +S+ D G GI E + P V   + +G         G+GLGL I ++
Sbjct: 614 RVIVEVRR-DGPEVEVSVTDYGIGIPEDQQPEVFGLYFRGRNVSPRHYSGLGLGLYICRN 672

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           I+  HGG+  + S+  EG      LP +     +P++ 
Sbjct: 673 IVERHGGRIGMSSREGEGSRFWFRLPAS-GPESLPQET 709


>gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 655

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 7/236 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     K  F++ +SHELRTPL +I G   +     +   + E  +  +     +
Sbjct: 424 ERQAME---KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPEKSQRMLDIAMFN 479

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L+ L+N+ILDL R+ +G+  + +  ++L D++ +    +   A++  +++     P 
Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVI--PL 537

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   + Q++ NLLSN+++F+    R+  T          IS++D G GI   +I
Sbjct: 538 EFKVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQEND-VLISVRDRGRGIPPDKI 596

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            T+   F Q   +      G GLGL I +SI+  HGG+    S    G      LP
Sbjct: 597 ETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLP 652


>gi|220909146|ref|YP_002484457.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865757|gb|ACL46096.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1068

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 5/242 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N  K  FLA +SHELR+PLN ILG+S   +L   G LN    ++ +  I R+ +    
Sbjct: 692 QANRIKDEFLAVLSHELRSPLNPILGWS---KLLLNGKLNLAKTQQALTTIERNARLQSE 748

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++LD+SRI  G+  LS S++ L   ++  I  ++L A+ K+I+I  ++ P +  V  
Sbjct: 749 LIEDLLDVSRILQGKLSLSVSSVDLASTIQAAIETVRLAAEAKSIQIETRLAPDVGLVAG 808

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++QV+ NL+SN VKFT  GGRV V +     + Q I+I D G GIA   +P V   
Sbjct: 809 DSTRLQQVVWNLVSNGVKFTPAGGRVAVRLEQLEQQAQ-ITISDTGKGIAPDFLPHVFDY 867

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIP 482
           F Q   A      G+GLGL I + ++  HGG     S     G      LP        P
Sbjct: 868 FRQEDGATTRKFGGLGLGLAIVRHLVELHGGTIQAHSPGEGLGATFTVRLPLLPTQPNRP 927

Query: 483 ED 484
             
Sbjct: 928 SA 929


>gi|320355414|ref|YP_004196753.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123916|gb|ADW19462.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 608

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 9/234 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHEL+TP+ AI G+ E +    +   +N   + ++  + R    L  +++++
Sbjct: 370 RQDFVANVSHELKTPITAIKGYVETLLDGALEDQDNA--RRFLSIVVRQANRLDAIVDDL 427

Query: 309 LDLSRIE--AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           L LSRIE    R ++S +   +  ++   +    ++A EK I I  + D    +   ++ 
Sbjct: 428 LTLSRIEDREQRRDISLTVAEVGPVLESALQTCAVQADEKGIIIQVESDEEWYA-PINQP 486

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            + Q ++NLL NA+ ++  G  + +              ++S+ DNGPGIA+  +P +  
Sbjct: 487 LLEQAVINLLGNAIAYSPQGSLITLRCQGSRNRQGEEFVHLSVIDNGPGIAKEHLPRLFE 546

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A    + G GLGL IA+ I   H G   + S L +G     ILP   
Sbjct: 547 RFYRCDKARSRDQGGTGLGLAIAKHIAQAHNGTVEVESSLGKGSTFTLILPAAP 600


>gi|298386285|ref|ZP_06995841.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260662|gb|EFI03530.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 539

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 9/244 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++   ++ +K+AE+    KS FL++MSHE+RTPLNA+ GFS ++  E+   ++NET ++
Sbjct: 293 QSQQEQEKAKKQAEKSIHTKSLFLSNMSHEIRTPLNALSGFSAILTEES---IDNETKQQ 349

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               I ++ + LL LIN+++DLS +E G+ +   +   ++ + R  I M++ + ++   E
Sbjct: 350 CNDIIQQNSELLLKLINDVIDLSSLEIGKMQFKFNECDIVALCRNVIDMVE-KIKQTQAE 408

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +      S   +  D   ++QV++NLL NA KFTA  G + + +   +      S+ D G
Sbjct: 409 VRFSTSLSSLKLTTDSARLQQVLINLLINATKFTAQ-GTITLELVKQTEDTALFSVSDTG 467

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++     +   F +         QG GLGL I Q I+   GG+  I     +G   +
Sbjct: 468 CGISKENQNKIFNRFEKLDE----NAQGTGLGLSICQLIIEQLGGKIWIDPDYDKGARFL 523

Query: 470 AILP 473
              P
Sbjct: 524 FTHP 527


>gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 623

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 9/307 (2%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             +M + +       ++                  +  +  +A  +DL      A    D
Sbjct: 313 ALLMELGLRRYISVPLVTRGTMLGVLTIASGRDDLLYGVEDRALAEDL---GRRAALAID 369

Query: 237 ETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             R  + A+    A+   +A +SH+L++PL  I+  + ++  +  G       +  +  I
Sbjct: 370 NARLYESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEAVEVRRPVERI 429

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            ++   +  LI ++LDL++++ G   +      +  ++ + I +L+  A EK++ + Q +
Sbjct: 430 QKAADRMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAAEKSLRLEQSV 489

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +  +     D + + QVI NL+ NA+KFT+ GG V V      GR   +S++D GPGI E
Sbjct: 490 ELGVDRALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPW-GREVRLSVRDTGPGIPE 548

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   + Q      +A +G GLGL IA++++  HGG+  + SK+ EG      LP 
Sbjct: 549 DQRARIFERYWQAKE---TAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGSTFFFTLPM 605

Query: 475 TRVLNFI 481
               +  
Sbjct: 606 VEATSAT 612


>gi|139439878|ref|ZP_01773243.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC
           25986]
 gi|133774806|gb|EBA38626.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC
           25986]
          Length = 481

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 147/394 (37%), Gaps = 24/394 (6%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT-PEYLTIYKSATLLIALS 150
           +   +              +            + +V        +       +  L+  +
Sbjct: 102 RENQATTDDTSGKRASHSPVSSAPTDSDSVANVEIVTSSGEHVGQVKLWAIGSDALLTKA 161

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            SA            +   + +++   +++S  +                  ++      
Sbjct: 162 DSAFREKTFNAMALAAVVAICISVVIGSLVSRMLTKPIHRITSTAKQIRDGDLSAR---- 217

Query: 211 NVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
               L    E D L     E+A SL  + +           R  + ++HELRTPL A+L 
Sbjct: 218 --TGLRGDDEIDQLGETFDEMATSLEKDMKHE--------KRLTSDVAHELRTPLMAMLA 267

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             E ++       +     E++  +    + L  L+ ++LDLSR+E     L+   + ++
Sbjct: 268 TVEAMQDGVYPTDD-----EHLETVASETRRLARLVQQMLDLSRMENSTAPLNLEPVDMV 322

Query: 330 DIVRECIIMLQLRAQEKNIEIFQ--KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             VR  +   +    ++++ +    +       V AD   + Q ++NL+SNA+++T  GG
Sbjct: 323 PFVRSIVNAQERLFVDRDLRLRFADETQGHDDVVEADPDMITQCVINLMSNAMRYTPEGG 382

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V V+V  +  +   I++ D G GIA+ ++  +   F +   +      G+G+GL + + 
Sbjct: 383 WVVVSV-LSDRKHVSIAVSDTGIGIAKDDLSRIFGRFWRADASRAREAGGLGVGLAVTKQ 441

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           I+  H G   + S+L +G      LP     +  
Sbjct: 442 IVERHHGYISVESELGKGTTFTIHLPREHTADAA 475


>gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 955

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   + R  AE  N AKS FLA+MSHE+RTPLN +LG  +++E   +     
Sbjct: 547 ITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS--- 603

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +    +S ++LL +IN+ILD +R+ +     +         +      L   A+
Sbjct: 604 -DQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K+I I   I P++  +   D    RQ++ NL+ NAVKFT   G V +++          
Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQ-GTVRISLHGLERHSPAG 721

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D+G GI +  +  V   F Q   + +    G GLGL I +S++   GG   
Sbjct: 722 ALRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIA 781

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           I S+   G  +   L   R+    PE   E
Sbjct: 782 IDSEEGAGTTIACTLMFGRI-EKTPEGVTE 810


>gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
 gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
          Length = 778

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGEMLHFDVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1118

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 9/237 (3%)

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+NAI+GFS+++    +         + +  I+RS + L++L+N++LD ++++
Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDT----EQHKQLSTINRSAKSLMHLLNDVLDSAKLD 605

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374
            G+ EL      L D +   I  L L+A+++ + +   I PS+++      + +RQV++N
Sbjct: 606 KGKLELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLIN 665

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NAVKFT   G+V V+V   +       I D G G+   ++  V  +F Q   ++   
Sbjct: 666 LIGNAVKFTCE-GKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRK 724

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491
             G GLG  I++ ++   GGQ    S L +G      +P       +     E   +
Sbjct: 725 YGGTGLGTTISKQLVELMGGQLEAESTLGQGSTFRFTIPLQSSSEPL---ETERADH 778


>gi|323691897|ref|ZP_08106150.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504049|gb|EGB19858.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 916

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   ++   + +  D+I + +  K         AE+ N AK+ FL+ MSHE+RTP+NA
Sbjct: 359 ISRELERVCIARTDVTDIIRQEQQQKEALAAALTAAEQANAAKTDFLSRMSHEIRTPMNA 418

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G S +         N+E   E I  I  S + LL+LIN+ILD+SRIE+G+  L    I
Sbjct: 419 IIGMSAIAAQAVG---NDEQVAECISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKI 475

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
              D +     +   +A  K ++     DP+L  V+  D   ++QV+LN+LSNA+KFT  
Sbjct: 476 PTEDFLNGLNAICYSQAASKGVDYECIADPTLDDVYTGDAMKLQQVLLNILSNAIKFTGE 535

Query: 386 GGRVH----VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG+V     V     +  G   ++ DNG GI E  +  +   F Q S+   +   G GLG
Sbjct: 536 GGKVTFSAMVRRKVRNMAGLRFTVNDNGIGIGEDFLRHMFEPFAQESMGTTALYGGTGLG 595

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I++SI+   GG   +RS    G E   
Sbjct: 596 LAISKSIVDMMGGTITVRSIKGIGSEFTV 624


>gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 884

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 8/237 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  EE   AK +F  ++SHELRTPL  I    E I  +          +  +  + R+ 
Sbjct: 365 RRLEEEATNAKLQFFTNISHELRTPLTLIADPVEHIIDDD---NLTRQQRNMLLIVRRNV 421

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  +I+ G+  L+ S   L   +R+ + +    A +K I +      S 
Sbjct: 422 NVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELH-AASP 480

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
            S+ AD   + ++  NLLSNA+K+T  GGR+  +   T G   +I + D G G+   E  
Sbjct: 481 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSA-VTEGDFVHIGVTDTGIGMTRDEAA 539

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            V   F Q        + G G+GL I +S    H G   + S+   G      LP  
Sbjct: 540 HVFERFYQV---RHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLPLK 593


>gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 873

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 4/263 (1%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L   + +  +   E+    EE    K  F+A+++HELRTPL  I G+++++    MG
Sbjct: 223 NLTLEKRVAIKTAQLKESITALEESARVKKDFIANITHELRTPLTLIRGWADLVLDGKMG 282

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             ++E   E +  I      L   INE+L +SR++AG  +L  +   +   + + ++  +
Sbjct: 283 S-DSEKLMETMDKIGLQTLILTKKINELLKISRLDAGMVKLVLTKTDIGACIFQAVLSFK 341

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++  I +    D S+  V+ D++ ++ ++ NL+ NA KFT   G + V++       
Sbjct: 342 GLVEQSGIHLTYTGDASVGEVFIDQEKLKDILNNLIRNAYKFTEK-GEILVSL-LKKSDR 399

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I++KD G G++   + ++   F QG  +     +G GLGL I +  +    G   + S
Sbjct: 400 LVITVKDTGIGMSSAVLKSIFRRFHQGDSSTTRKYEGTGLGLAIVKDSVEMMNGTISVES 459

Query: 461 KLREGVEVIAILPNTRVLNFIPE 483
            + +G      LP   + N  PE
Sbjct: 460 MVGQGTVFTVDLPMD-LENSEPE 481


>gi|327541216|gb|EGF27760.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1150

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 33/285 (11%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           QA     +     A     E +  AE+ N  K++F+A +SHELRTPL  I G ++++  +
Sbjct: 386 QAVIIRDVTLQRAAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQ 445

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           T+        + Y+  I ++ + L ++I +ILD + IEAGR  +    + L ++V +   
Sbjct: 446 TLPTAA----RRYVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFG 501

Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
            L +R  +K + +   I P     V AD K +RQ+++NL  NA+KFT   G V + +G  
Sbjct: 502 CLAVRVADKPVRLCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNR-GEVSLRLGPI 560

Query: 397 SG-------------------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
                                          +++ D G GIA      +  +F Q     
Sbjct: 561 GDVPPSHSNDANSPELTTNESTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGT 620

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPN 474
                G GLGL IA+ +    GG   + S++  G +      LP 
Sbjct: 621 NKQFGGTGLGLAIARGLAQRMGGDITVTSQVDLGSQFQCALALPL 665


>gi|307708757|ref|ZP_07645219.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
 gi|307615123|gb|EFN94334.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
          Length = 452

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 9/242 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      +   +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486
            A   A+ G GLGL IA+ I+  H G    +S   +G     +LP     V   + ED  
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLPYDKDAVKEEVWEDEI 447

Query: 487 ES 488
           E 
Sbjct: 448 ED 449


>gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium]
          Length = 1221

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 14/286 (4%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSR 251
                  Y+      +  ++   +   D L   +   +  ++   E    AEE +  KS+
Sbjct: 417 VLGVLNLYVPEGHGGTEDELTFVKTIADTLAGIIRRVQLQAERTAEAVHFAEESSRTKSQ 476

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+NA++G    +       L  +  ++Y+         LL LIN+ILD 
Sbjct: 477 FLANMSHEIRTPINAVMG----MHYLLQQTLLTDQQQDYLDKADNGAHSLLGLINDILDF 532

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEAG+ E+      L D++     +     ++KNIE+   I P +   +  D   + Q
Sbjct: 533 SKIEAGKLEIEAIDFQLSDMLENLADITSGITRKKNIELVITIPPDVPDHLVGDPTRLGQ 592

Query: 371 VILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           ++LNL+SNA KFTA  G V V+V               +++D G G+   ++  +  +F 
Sbjct: 593 ILLNLVSNAAKFTAE-GMVLVSVTGFTALPDDQVELRFAVRDTGIGMTPEQLGKLFQAFT 651

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           Q   +      G GLGL I++ ++   GG     S   EG E    
Sbjct: 652 QADSSTVRKFGGTGLGLTISKQLVEKMGGAIEATSMAGEGSEFTFT 697


>gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1362

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA MSHE+RTPL+ ILG+++++       L     +  +  I  +G+ LL ++N++
Sbjct: 890  KSEFLAMMSHEIRTPLHGILGYADLLTE---CGLLAAEQQRQVEHIRTAGRALLAVVNDV 946

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
            LD S IEAGR  L     +L  ++ E + +++  A+ K + +  +IDP++   +  D+  
Sbjct: 947  LDFSAIEAGRVALDPRPFALRALIGEVVAIVREPAERKGLTLAAEIDPAVPDWLVGDQGR 1006

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTS 423
            +RQV+LNL +NA KF    G V ++V              +++D G GI E ++  +   
Sbjct: 1007 VRQVLLNLAANAQKFCHA-GSVTLSVAPDRIAAEALTVRFAVRDTGVGIEEDKLGRLFQR 1065

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q   +I+    G GLGL I+++++   GG+  + S    G      L   R    +P
Sbjct: 1066 FSQADGSIRREFGGTGLGLAISKALVEAMGGRIGVESVPGRGSTFWFTLRLLRAAPPLP 1124


>gi|160895668|ref|YP_001561250.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160361252|gb|ABX32865.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 1166

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 182/444 (40%), Gaps = 33/444 (7%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLITL--AVYAANLSLGKK-VMNSDIKIGEVYVWR 107
           I     +L++ +  W T    +       L         ++ +K   + D+     Y   
Sbjct: 477 IALALSMLLSPLLAWLTGGRYYLARPAGNLWKPGETVRCAVCQKHFESEDMAHCPAYGAP 536

Query: 108 IWLLVGQI-----------------AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           I  L   +                    L   LL                     L A++
Sbjct: 537 ICSLCCSLESRCHDRCKTGSRAGEQLHALASALLPPRWATKVNFRAGQYLVVMLSLCAVT 596

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
              +        V++       ++   A+    +   +L  +L    +++  ++    + 
Sbjct: 597 AFMVG------VVYMQESLQAGSVDGGALRIPFLKVFALLALLCAVAAWWVVLSTDSRRM 650

Query: 211 NVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                  Q +     IA  +   +     +  AE+ + AK+R++A M+HELR+PLN++LG
Sbjct: 651 AQDESERQNQLLLQEIAAHKRTDAELQAAKDHAEQASQAKTRYVAGMTHELRSPLNSLLG 710

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           +++++      P  +   +E +  +  SGQHL  LI+E L+L+ IEAGR  L  + + L 
Sbjct: 711 YTQILLK---SPQVDGWVRETLSTMQHSGQHLRALIDESLELASIEAGRLRLDLAPLPLP 767

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++     M++ +AQ + ++   +   ++   V AD K +RQ+++NLLSNAV+FT   G 
Sbjct: 768 ALIDGIEAMMRPQAQARGLQFSVETLGTMPRWVRADAKRLRQILINLLSNAVRFTQR-GE 826

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + + +       I + D G GI   ++  +   F +GS   + +E G GLGL I   +
Sbjct: 827 VRLRMDFRP-HVSRIEVIDTGIGIEPQDMERIFVPFERGSAGRRVSEAGTGLGLTITHLL 885

Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472
               GGQ  + S   EG      L
Sbjct: 886 TELMGGQLTLSSTPGEGSCFTVRL 909


>gi|313158986|gb|EFR58363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 349

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 136/316 (43%), Gaps = 6/316 (1%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V         A     +  + +  I           +   ++  +  + +       
Sbjct: 28  LLDVVWWMTLCAAAGVFVVMALVALFIIRKYVAYKLKPIYSIVLSRDVHTNEIFSELKDK 87

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             +++  EL      +D+   R +E    + ++L +++HEL+TP+  I G+   +     
Sbjct: 88  HVENIGEELTAWADTNDKEIARLKETEQFRKQYLGNVAHELKTPIFNIQGYISTLLDG-- 145

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G  +    ++Y+    +S   L+N++N++  +S++E+    L      ++ + +E     
Sbjct: 146 GLEDELINRKYLERAEKSIDRLINIVNDLDTISKLESNMNRLKMERFDIVALTKEIAEQA 205

Query: 340 QLRAQEKNIEIFQKIDPSLS---SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++ A +K I+I  K   +L     V AD+  + QV++NL+ N++++   GG+  V     
Sbjct: 206 EMEADKKGIKISVKGAENLPSPFWVLADKHYIGQVMVNLIINSIRYGKEGGQTRVHF-RD 264

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 I ++DNG GI + ++P V   F +        + G GLGL I + I+  HG + 
Sbjct: 265 MLDKILIEVEDNGSGIGKEDLPRVFERFYRTDKGRSREQGGTGLGLAIVKHIVEAHGERI 324

Query: 457 LIRSKLREGVEVIAIL 472
            +RS+L  G      L
Sbjct: 325 TVRSELGVGSTFSFTL 340


>gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 577

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELET------------MGPLNNETYKEYIGDIHRS 297
           S FL+ +SHE+RTPL ++LGF+ +IE                     E   E +G I   
Sbjct: 341 SDFLSMVSHEIRTPLTSVLGFAVIIEKRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVSE 400

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII-MLQLRAQEKNIEIFQKIDP 356
           G+ L +LIN++LDL+++EAG+    +  +   ++VR  +   + L +  K + +  +I+ 
Sbjct: 401 GERLKHLINDVLDLAKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIEG 460

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            L  V  D   + QV++NL+SNA+KFT   G V      T G    + + D G GI E E
Sbjct: 461 RLPEVLGDRDRLIQVLVNLVSNALKFTER-GSVTCRA-RTEGHYIVVDVTDTGIGIPESE 518

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              V   F Q    + +  +G GLGL I + I+ +HGG+    SK   G      LP  
Sbjct: 519 QHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLPIA 577


>gi|160937677|ref|ZP_02085037.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439322|gb|EDP17074.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
          Length = 468

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 137/309 (44%), Gaps = 12/309 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIA 226
           ++  L   + +   +  I L     T       IT    +     L  + +    D++  
Sbjct: 166 ILSILYITSAVLFGLSLIILLVFTQTVYLPLRKITVGANEYAAGNLDYRIDVKTHDEMGY 225

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +    +SDE  K  E     +  F+A++SH+ R+PL +I G+ E I     G +  E 
Sbjct: 226 LSDTLNYMSDELNKMEE----YQKNFIANVSHDFRSPLTSIKGYLEAILD---GTIPAEM 278

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y++Y+  +    + L  L   +L L+ ++A  Y LS +   +  ++++     +   + K
Sbjct: 279 YEKYLSRVISETERLHKLTESMLTLNSLDARGY-LSRTNFDINRVIKDTAASFEGTCESK 337

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+         +  V+AD   ++QV+ NL+ NA+KF+     +++       +  ++S+K
Sbjct: 338 NVSFDLTFSDDIQMVFADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGRYEK-IFVSVK 396

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  +   F +  ++    ++G GLGL I + I+  HG    + S    G 
Sbjct: 397 DTGIGIPKDSLKKIWERFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENIDVVSTEGVGT 456

Query: 467 EVIAILPNT 475
           E I  LP +
Sbjct: 457 EFIFSLPRS 465


>gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501]
 gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 797

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 6/236 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E     K+ F++++SHELRTPL +I G   +I    +G     + ++ +   + +
Sbjct: 431 ERKRIE---QMKNDFVSTVSHELRTPLTSISGALGLIVGGALGK-APPSMQQMLEIAYSN 486

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L +LIN++LD+ +I AG+        SL ++++E +   Q    +  +    +    
Sbjct: 487 SLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHATD 546

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           +  VW D   ++QV+ N LSNA KFT  GG + V      G+   IS+ D GPGI E   
Sbjct: 547 V-RVWVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLR-GQRVRISVTDQGPGIPEAFR 604

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             V   F Q   +    + G GLGL I + ++   GG      +  +G      LP
Sbjct: 605 SRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 660


>gi|319950785|ref|ZP_08024673.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea
           P4]
 gi|319435542|gb|EFV90774.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea
           P4]
          Length = 514

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 4/294 (1%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           LA +                    ++ +     + L+   +  ++  +E   R EE +  
Sbjct: 223 LAAVARHDTDGGRGSRARTDDGPAEVRALAEAFNTLLDTRDDYEAGREEQLSRLEELDRQ 282

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  F++++SHELRTPL +I+G++E++     G L +      +G + R+   L  LI ++
Sbjct: 283 KDAFVSTVSHELRTPLASIVGYTEMLCDGDGGELTSA-QHRLVGVVQRNADRLRGLIEDL 341

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LSRIEA   +++   +SL ++V      LQ  A    + + ++++P  + V  D   +
Sbjct: 342 LILSRIEAQNLDIAHERLSLGEVVGNVTESLQPAADRAGLALVERVEP--AEVIGDALHL 399

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            + + NL+SNA+KFT  GG V V V         +++ D G GI E E   + T F + S
Sbjct: 400 ERAVTNLVSNAIKFTPGGGSVTVGVA-VDEHVATVTVADTGIGIPEAEQEHLGTRFFRSS 458

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            A + +  G GLG+ I Q+I   HGG     S   EG      +P        P
Sbjct: 459 SAQQRSIPGTGLGVSIVQAIADAHGGGLDFDSVEGEGTTFRLTIPLWSAGAASP 512


>gi|220921052|ref|YP_002496353.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219945658|gb|ACL56050.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 438

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 9/255 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A+     +  F+A+ SHELRTPL ++LGF E ++       +      ++  +      +
Sbjct: 186 AKRLEAMRVDFVANASHELRTPLASLLGFIETLQ--GPARNDPAARDRFLAIMREQALRM 243

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LI+++L LSRIE   +    + I +  + R+ ++ L   A+E+ + +  + DP   +V
Sbjct: 244 TRLIDDLLSLSRIELRAHVPPTTPIDVGPLARQIVVSLTPLAEERGVAVTLEADPEPLAV 303

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGE 416
             D   + +++ NL+ NAVK+   G  V V V  T           I+++D+GPGIA   
Sbjct: 304 LGDRDEILRLVENLVENAVKYGGEGAHVAVRVARTPCEEGRTPQIEIAVQDDGPGIAPEH 363

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474
           +P +   F +        + G GLGL I + I+  H G+  + S+   G    A++P   
Sbjct: 364 LPRLTERFYRVDAVSSRQQGGTGLGLAIVKHILNRHRGRLSVESEPGRGSTFRAVIPALV 423

Query: 475 TRVLNFIPEDNHEST 489
                  P  + +S 
Sbjct: 424 EETPPARPVPSPQSA 438


>gi|325921438|ref|ZP_08183294.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548080|gb|EGD19078.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 291

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 9/271 (3%)

Query: 216 SCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + + +   L  ELE          +  D+  ++  + +  KSRFL+ MSHE RTPL++IL
Sbjct: 18  ALRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFRTPLSSIL 77

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
             + ++E    GPLN E  K+ +  +  S + L  +++++LDL++IEAGR  +S     L
Sbjct: 78  SITRLLEDGMDGPLNAEQSKQ-VRFVSASARELTEMVDDLLDLAKIEAGRIAISPGWFDL 136

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           +D+      M +      +  +  +  P+L  ++ D+K + Q++ N +SNA+KFT   G 
Sbjct: 137 MDLFSALRGMFRPLTDAGSTTLIFEDPPALPMLYTDDKKLAQILRNFISNALKFTPQ-GH 195

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V             ++D G GI       +   F Q    ++    G GLGL I +  
Sbjct: 196 VRVFAQLEGDTHVRFGVQDTGIGIPAELHEALFEDFVQVDSPLQKRLTGTGLGLAICKRF 255

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               GG+  I S + EG E   +LP T    
Sbjct: 256 AELLGGRVGINSVVGEGSEFFVVLPVTLAAE 286


>gi|260439089|ref|ZP_05792905.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808401|gb|EFF67606.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 1103

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 12/273 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                  E    A   N AKS FL++MSH++RTPLNAI+G +++         N +    
Sbjct: 630 KRNKQLVEATDAANRANKAKSNFLSNMSHDIRTPLNAIIGMTDMAINHI---ENRQRVYS 686

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  I  SG+ LL L+N ILD+S IE+G+  ++ES +SL D+      M+Q + +EK+++
Sbjct: 687 NLMKIKSSGRILLYLVNNILDMSYIESGKVVVNESPLSLADLFHSVATMVQGQIKEKHLK 746

Query: 350 IFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403
                       V +D+  + ++I+NLL N++K+T   G V +++              I
Sbjct: 747 FKVYAKNVKNEIVLSDKSTLNKIIINLLGNSIKYTKEYGLVSLSIEEQPTEITDLSNYII 806

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G G++E  +  +   F +      S  +G GLG+ I + ++   GG   ++S+L 
Sbjct: 807 KISDTGIGMSEDFVKRMFEPFERAKDTTISGVEGTGLGMSITKQLIEIVGGNIDVKSELN 866

Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST--QYKCY 494
            G E    +P         ED  E     YK +
Sbjct: 867 VGSEFTVTIPLKHT-EADDEDTTEYNIEDYKVF 898


>gi|254784795|ref|YP_003072223.1| two-component hybrid sensor and regulator [Teredinibacter turnerae
           T7901]
 gi|237684045|gb|ACR11309.1| putative two-component hybrid sensor and regulator [Teredinibacter
           turnerae T7901]
          Length = 975

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 114/478 (23%), Positives = 194/478 (40%), Gaps = 41/478 (8%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM--------------WSLITLA 81
            +   H     ++   +    LL A     F       +              W++  + 
Sbjct: 83  ALALSHYRISRKIIAPILGLSLLCAASMDLFHTLVSLRLVDTQTASNAMISFSWAVARIV 142

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-----PGTWTPEY 136
                L     +M +        +  +  ++G I   L   L+  +      P T  PE 
Sbjct: 143 SAVVLLVGLTLLMLTGRGHLSARMANLPYVLGLIFFLLGIGLIITLVRWPELPNTLFPER 202

Query: 137 LTIYKSATLLIALSISALSNF----------MLPYAVFLSFFPVVVALSTQAIMSMHVLD 186
           L  +    + + L+++               +L  A+ +S  P++ A       S  + D
Sbjct: 203 LLKHPLDVVPLLLNLAVGGLLLVRLLRRQGDVLAEALLVSLLPMLAAEIYMIFGSSALYD 262

Query: 187 ISLAG-----MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                     +L+ ++ F   +  H +  ++  L             E    L  ++ + 
Sbjct: 263 HYDFAAHGLKILSYSVPFVGLLLDHHYTYHLDTLKTNQLHQTYRELQERTHELL-KSHRS 321

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            EE N  K+ FLAS++HELRTPLN+++GFS V+        +++ ++  +  I R+  HL
Sbjct: 322 LEESNRFKTEFLASVTHELRTPLNSVIGFSRVLLKSRSNEQSSKEHR-AVEAIFRNSTHL 380

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
           L +IN+ILDLS+IE G   L +S   L D+++E   ML+  A +K +            +
Sbjct: 381 LGVINDILDLSKIETGSITLEKSEFLLSDVIQEVFEMLEPLADKKQLTFQLLNYARNLRL 440

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417
            +D   +RQV++NL SNAVK+T   G V + +        G    IS++D G GI E E 
Sbjct: 441 VSDMAKLRQVLINLCSNAVKYTER-GSVVICIERADHEELGEVVKISVRDTGIGIEESEK 499

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F +   AI S  +G GLGL I+  ++   GG     S+   G E     P  
Sbjct: 500 NKLFVEFSRTEAAINSGAEGTGLGLMISAKLVQVLGGAIDFDSEFGVGSEFRVCFPTA 557


>gi|221197027|ref|ZP_03570074.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203699|ref|ZP_03576717.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221175865|gb|EEE08294.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183581|gb|EEE15981.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 549

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           +   +  +    +++    +         I +L+ A   +   +  AE  N AK  FLA 
Sbjct: 125 SEGRWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLAL 184

Query: 256 MSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           +SHELR PLN I  ++ V+    E   P + +  +  +  I R  Q    LI+++LD+SR
Sbjct: 185 VSHELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSR 244

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           I +GR+ L    +     VR  +   +  A +K+I +      S + V  D + ++QV  
Sbjct: 245 ISSGRFSLDSKPVDFAAAVRTVVESHRPVAAKKDIMLATSGLQSQAVVSGDARRLQQVAS 304

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NA+KFT  GGRV V +    G    +S+ DNG G+    +P +   F Q   +   
Sbjct: 305 NLIGNALKFTPQGGRVEVALTRL-GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTR 363

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
              G+GLGL I + ++  HGG     S+    G  +   +P 
Sbjct: 364 QYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVRIPL 405


>gi|268609962|ref|ZP_06143689.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 151/307 (49%), Gaps = 9/307 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++A++   +  + V+         + +     I+    K  +   S + E D      E+
Sbjct: 168 ILAVAVVFMTIILVIITIGLYFAGSIVKPIRQISGIARKFAMGDFSVRIENDSDDEIGEL 227

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             +++             K+ F++S+SHELRTPL AI G++E +     G  + +T K+ 
Sbjct: 228 CTAINHMA-DELSTAEAMKNEFISSVSHELRTPLTAIKGWAETLM--LDGGTSPDTMKKG 284

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +G I    + L  ++ E+LD SR++ G + L  + + ++  + + +++   +A+++  EI
Sbjct: 285 VGVIVNETERLQQMVEELLDFSRMQNGHFTLQSATMDILAELGDAVLIYSEKARKETKEI 344

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
                  L  V+ D+  +RQV +N++ NAVK+++ G R+ +   + SG    +S++D G 
Sbjct: 345 IYDEPEMLPFVFGDKNRIRQVFINVIDNAVKYSSAGDRITIKA-YESGDNVVVSVRDTGV 403

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVI 469
           GI + ++  V T F + +   +    G G+GL +A  I++ HGG   I S+    G  V 
Sbjct: 404 GIKQSDLAKVKTKFYKANHTRR----GSGIGLAVADEIISMHGGTLSIDSEGEGLGTTVT 459

Query: 470 AILPNTR 476
             LP  +
Sbjct: 460 ITLPAKK 466


>gi|242281150|ref|YP_002993279.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242124044|gb|ACS81740.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 596

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 117/234 (50%), Gaps = 6/234 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHELRTPL ++ G++E +  +   P +    K ++  I ++  H+  +++++
Sbjct: 366 RQDFVANVSHELRTPLTSVKGYAETLLSDPPPPES--IQKNFLATIEKNANHMCKIVDDL 423

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LSR+E+G  ++    I   D +RE        A+++ +++ +  +    +V AD   +
Sbjct: 424 LNLSRLESGHEKVELMPIDPTDALREAWEACSGLAKKRKVDLKRSFEKGDFTVMADSGQL 483

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+  NLL N +K+      V V            ++ D+GPGI   + P +   F    
Sbjct: 484 MQLFRNLLENGIKYGPEENPVIVE-HRVREGRLQFAVIDSGPGIPAADQPRIFERFYSVE 542

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR---EGVEVIAILPNTRVLN 479
              ++     GLGL I++ I++NHGG+  ++       +G   +  LP  + ++
Sbjct: 543 KFRRNEFGSTGLGLAISRHIVSNHGGEISVQCPPEGHRQGTAFVFSLPLMQAVS 596


>gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
 gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
          Length = 837

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 4/254 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  +  E+ +  K+ F+  +S+ELR+PL  I+GF++++     G L  E   EY 
Sbjct: 588 ERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGDLT-EKQGEYA 646

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   LL +IN+ILDL+ ++AG  EL    + L   V   +  L+ R  E  I + 
Sbjct: 647 DYIQSSSSALLAIINDILDLATLDAGIMELDLREVDLASTVEAAVEGLKDRIAEARINLR 706

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            ++  ++ ++ ADEK +RQV+ NL+SNAV+++   G V ++            ++D+G G
Sbjct: 707 TQVPDNIGNMIADEKRLRQVLFNLISNAVRYSEPDGVVDISCDR-DDDKVTFVVQDHGLG 765

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I    +  V   F        +  QG GLGL I +S +  HGG   I S + +G  V  +
Sbjct: 766 IPAEILTQVFNRF--VGHDTGARRQGAGLGLAIVKSFVELHGGTVDIDSVVGKGTTVTCV 823

Query: 472 LPNTRVLNFIPEDN 485
            P    L       
Sbjct: 824 FPAHPDLADQAAAE 837


>gi|182682436|ref|YP_001830596.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
 gi|182632546|gb|ACB93322.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
          Length = 558

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 280 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 339

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 340 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 397 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 456 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 515

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 516 TSPGLGKGAMFTVSL 530


>gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72]
 gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72]
          Length = 613

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
             +     I E +  +    E      + N AK  FLASMSHELRTPLNAI+GF+  + +
Sbjct: 353 LVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRTPLNAIIGFTGTLLM 412

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           +  GPL NE  ++ +  + RS  HLL+LIN++LD++RIEAG++E     + L   + E  
Sbjct: 413 KLPGPL-NEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVFEPVDLCATLEELA 471

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           ++L+ +A+ K + +  K+      V  D++   Q+++NLL NA+KFT   GR+ + +   
Sbjct: 472 VVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFT-EHGRIELALARI 530

Query: 397 SGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              G     + + D+G GI   +   +   F + + A   A++G GLGL +   + A  G
Sbjct: 531 EADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQEGTGLGLHLCLKLAAQLG 590

Query: 454 GQFLIRSKLREGVEVIAILP 473
           GQ  + S   EG     ILP
Sbjct: 591 GQIAMHSTYGEGSVFSLILP 610


>gi|170738329|ref|YP_001779589.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820517|gb|ACA95099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 184/475 (38%), Gaps = 33/475 (6%)

Query: 34  DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93
               +T     L   +  + +   L     +          +  I+         +   +
Sbjct: 50  AAAWLTSFGGGLAAAAASVGVIGALWWRDASLPALLAQAGAFVAISFVECVLVAVVKPLL 109

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLC-----------WTLLTLVEPGTWTPEYLTIYKS 142
            N  ++           +V     GL                      +W P   +I+  
Sbjct: 110 ANDRLREIGDEESEPSSVVSVPDDGLLRRVVDASPDAIVGTDAARRITSWNPAAASIFGL 169

Query: 143 ATL-------LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LA 194
            T        +  ++   L    +P +      PV          +      + A   + 
Sbjct: 170 DTAQANGRDIVTMIAPRWLRRHAVPASFADLRAPVGPLDVLCVRPNGGRFRATFAASPIV 229

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            A      ++  L ++       ++E+  L      +   + + R +A+  N  K   LA
Sbjct: 230 DAQGHCAGLSLTLREAGE---RRRSERHHL-----RSLRGARDARVQADASNRLKDELLA 281

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHELRTPLN I G++EV+          +  ++ +  I RS + L +++ ++LD S +
Sbjct: 282 TVSHELRTPLNVIYGWAEVLRN----ADGQDFAQQAVDAIDRSARSLSHMVADLLDASSL 337

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
             GR  L    + L+ I R+    L   AQ   + +  +       + AD + +RQ++ N
Sbjct: 338 ATGRLRLERVPVDLVRIARDAARELDTTAQANGLVLSTEYAMPACVIPADGERLRQLLSN 397

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNA+KFT  GGRV+V++   +G    +S+ D G GIA   +P +  +F +   A  S 
Sbjct: 398 LLSNAIKFTPPGGRVNVSLTR-AGERVRLSVSDTGQGIAPEYLPHLFETFSRPEGAFTSP 456

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHES 488
           ++G+GLGL I ++I   HGG+ +  S     G+ V   LP     +   E    +
Sbjct: 457 KRGLGLGLSIVRNIAQLHGGEVVATSAGAGRGMTVTVTLPAGWDADDPMEQPSRA 511


>gi|317130193|ref|YP_004096475.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475141|gb|ADU31744.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 468

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 144/315 (45%), Gaps = 19/315 (6%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            +F  F  + +A       S           + + L    +  Y L K +       A K
Sbjct: 170 ILFTIFVALFLAGIIIYFTSRK---------ITSPLIEMNHSAYQLAKGDFSHRVKIATK 220

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D++    E    +++E        +  +  F+A++SH+LR+PL +I GF   +     G 
Sbjct: 221 DEVGQLGETLNYMAEE----LGSIDQMRKDFVANVSHDLRSPLTSIRGFLGALID---GT 273

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           +  E + +Y   +    + L+NL+ ++L ++R+EA + ++  +  +L + +R  I  ++ 
Sbjct: 274 IPKEEHSKYFSIMKNETERLMNLVEDLLHMARLEANQIDIKPNTYNLTEQLRLIIAKMEP 333

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
              ++ +E+    +  +  V+ADE  M QV +NLL NA++F+    ++ V +        
Sbjct: 334 SLSKRRVELELHCEEDV-FVYADENRMDQVFINLLQNALQFSHEDSKIEVNIE-KESDVA 391

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +SI D GPGI E ++  +   F +   A      G G+GL I + I+  HG    ++S 
Sbjct: 392 KVSITDYGPGINEEDLKYIWERFYKKDKARSKKT-GAGIGLSIVKHIIDLHGTTIDVKSD 450

Query: 462 LREGVEVIAILPNTR 476
           ++EG   I  L   +
Sbjct: 451 VKEGTTFICTLKLAK 465


>gi|148728193|gb|ABL96292.2| histidine kinase [Pseudomonas fluorescens]
          Length = 778

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 126/273 (46%), Gaps = 6/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +  AE   +   L  +    +  R  A +   A+S FLA+MSHE+R
Sbjct: 250 RLTDYLGQLEHIVSARTAELKAINTRLSQSNEELEIARSTALDMAEARSAFLANMSHEIR 309

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    N   ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 310 TPLNGLLGMIALSLDGPL----NAEQQQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 365

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 366 EHIPFDLGSLIEDTANLLSQNAAPSVELTCLIDPHFPALVLGDPTRVRQIVSNLLSNALK 425

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +    G G  I + D G GIA+     +   F Q    I     G GLG
Sbjct: 426 FT-RFGRVDVRLSA-HGDGVRIEVCDTGIGIAQEAQVKIFQPFTQAGAGITRQYGGTGLG 483

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L +  ++     G+  I S+   G +  A LP 
Sbjct: 484 LALTYNLCEAMQGRLTISSEAGFGSQFCADLPL 516


>gi|22536884|ref|NP_687735.1| sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|22533734|gb|AAM99607.1|AE014224_10 sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
          Length = 449

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDE---GALNEEVAPSFIKVSLDETNRMMRMISDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE-----IFQKIDPSLSSVWADEK 366
           SRI+     L     +    +   +        +K +      I +        V  D  
Sbjct: 268 SRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NAVK++  GG++ V +  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A    + G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRKQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|313112843|ref|ZP_07798490.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624913|gb|EFQ08221.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 474

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 192/474 (40%), Gaps = 47/474 (9%)

Query: 1   MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60
           MYR   +     G L   TGD +     ++    R ++    +       +L  +  ++A
Sbjct: 44  MYRRFSSV---SGQLKMYTGDTVQSTAATRSVALRRMVEQFADKDKYEFMLLDSYGGVIA 100

Query: 61  NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120
           +         +  +                     +      + V       G++ +  C
Sbjct: 101 SSSGTNADGIVTGI-----------------DFEQAQEASDGLGVAVYRTQSGELVMAAC 143

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
                LV         + +  S TL+ A   +A++  ++  AV L+F  +      +   
Sbjct: 144 ----YLVPYAAEDVAAMRLVTSLTLVGAQIKNAIAVSVVIAAVILAFTVMSGLYFIR--- 196

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                       +   L         + +  + +       +    E++  +   ++  +
Sbjct: 197 -----------SIVVPLGQVERTAASIARGELDVRLPVTGNEH--DEVDRLRGTINQMAE 243

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             EE    K+ F++S+SHELRTPL +I G+ E +   T+    +E Y++ +  I+     
Sbjct: 244 GLEETEKMKNEFISSVSHELRTPLTSIRGWVETLR--TLDDPADENYRKGLEIINNETGR 301

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L N++ E+LD SR++ GR  +    + L+  + + ++  + R Q + + +       +  
Sbjct: 302 LYNMVEELLDFSRLQNGRIRMDCRPLDLVAELTDAVLFCEARIQREGLVLSYTEPEEMIP 361

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+AD   +RQV +N++ NA+K++A GGR+ V + W      +  I D G GI   ++  V
Sbjct: 362 VYADPDRLRQVFINIMDNAIKYSAPGGRITVKL-WAGEYKAFAEIIDQGRGIPPEDLENV 420

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            T F +GS +++    G G+GL +  SIM    G   I+S L  G  V   LP 
Sbjct: 421 KTKFYKGSNSVR----GSGIGLALVDSIMTALDGTMDIKSTLGRGTVVTLGLPL 470


>gi|308069058|ref|YP_003870663.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858337|gb|ADM70125.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 853

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 10/243 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
             S++ RK  +E N AKS FLA MSHE+RTPLN I+G S+++    +  +     ++Y+ 
Sbjct: 205 KASEQKRKEMDEANRAKSIFLAHMSHEIRTPLNGIIGLSKLLNKTELTAV----QRDYLH 260

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +  S + L ++++ +LD S++EAG  EL +       ++R     +    ++K IE+  
Sbjct: 261 KLLASSRTLSSMLSNVLDFSKMEAGSLELEKVEFEPEKLLRHLADTVGTLLEDKEIEVVF 320

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407
             DP+L      D   M QV+ NLL+NA+KFT   G V + V   S +    G    ++D
Sbjct: 321 ITDPALPKSFKGDPLRMEQVLSNLLTNAIKFTDQ-GHVLLQVKMLSQQEGRVGVSFMVED 379

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+E  +  +   F Q S +      G GLGL I++ +    GG+  ++S+L E  +
Sbjct: 380 TGIGISETCMDKLFVPFIQASTSTSRRYGGSGLGLAISKHLAEAMGGKVEVKSRLGEYSQ 439

Query: 468 VIA 470
              
Sbjct: 440 FYF 442


>gi|47096765|ref|ZP_00234348.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224503625|ref|ZP_03671932.1| hypothetical protein LmonFR_14163 [Listeria monocytogenes FSL
           R2-561]
 gi|254900964|ref|ZP_05260888.1| hypothetical protein LmonJ_14156 [Listeria monocytogenes J0161]
 gi|254913822|ref|ZP_05263834.1| sensor histidine kinase [Listeria monocytogenes J2818]
 gi|254938211|ref|ZP_05269908.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|47014851|gb|EAL05801.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610823|gb|EEW23431.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|293591839|gb|EFG00174.1| sensor histidine kinase [Listeria monocytogenes J2818]
          Length = 459

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRL-YEDTTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|229029685|ref|ZP_04185760.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
 gi|228731627|gb|EEL82534.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
          Length = 345

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 152/344 (44%), Gaps = 18/344 (5%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATA 196
            +   + L I  SI+      +  A+ ++  P V   +S        VL  +L G+L   
Sbjct: 8   VLALFSFLTIIWSIAFYVATSILNALEVNVSPFVTFLISDMVGFVFIVLIWTLIGILMRP 67

Query: 197 --LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEENLAK 249
              +    I   + K      S +   ++     +   ++    ++DE           +
Sbjct: 68  KRQAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TMEKMR 123

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L   +L
Sbjct: 124 QEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQNLL 180

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L+ +E+  Y   ++   L   +++ ++  +    EK IE+   ++     + AD + M 
Sbjct: 181 KLTLLESEEYTPEKTTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITADRESMS 238

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV +NL+ N++KFT+ GG + + +     +   + I D+G GI+E +   +   F +   
Sbjct: 239 QVWINLIHNSIKFTSSGGTITIQL-QEHEKVVEVRISDSGIGISEEQKQHIFERFFKADS 297

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 298 SRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 341


>gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 955

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  ++   + R  AE  N AKS FLA+MSHE+RTPLN +LG  +++E   +     
Sbjct: 547 ITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS--- 603

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E +    +S ++LL +IN+ILD +R+ +     +         +      L   A+
Sbjct: 604 -DQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           +K+I I   I P++  +   D    RQ++ NL+ NAVKFT   G V +++          
Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQ-GTVRISLHGLERHSPAG 721

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D+G GI +  +  V   F Q   + +    G GLGL I +S++   GG   
Sbjct: 722 ALRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIA 781

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           I S+   G  +   L   R+    PE   E
Sbjct: 782 IDSEEGAGTTIACTLMFGRI-EKTPEGVTE 810


>gi|307704959|ref|ZP_07641847.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
 gi|307621469|gb|EFO00518.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
          Length = 449

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|89899388|ref|YP_521859.1| multi-sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89344125|gb|ABD68328.1| multi-sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 476

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 154/440 (35%), Gaps = 19/440 (4%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
               LL   +G + T +   P  S +   +    L      +    +   +  W      
Sbjct: 9   IACQLLGGLVGWYATSSSHAPT-SELVSTLAGVVLGGVVWFLLDTSRGARLLRWLRVGDA 67

Query: 113 GQ-IAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
            +       W  ++           +     +        ++ A  N +L          
Sbjct: 68  SEVAMRSGLWGEVSDRARRLIRAREQMTLESQRRLQDFLSALQASPNGVLLLDAQGQIEW 127

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-------KILSCQAEKD 222
           +    ++   +      +   G L    +F +Y     ++  +                 
Sbjct: 128 LNQTAASHFGLDAQRDLLQHLGNLVRDPAFASYFASRDYRHELIMPGRESTPARPVRLSV 187

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L    E    L        E+    +  F+A++SHE+RTPL  + GF E ++     PL
Sbjct: 188 HLHPYGEGRLLLLSSDITAVEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQTL---PL 244

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           N+E    Y+  + +    +  L+N++L LSR+E          I++  ++ +     +  
Sbjct: 245 NDEERARYLALMAQQAGRMQTLVNDLLVLSRLEGSPLPSDSEGIAVPALMHQLEQDGRAL 304

Query: 343 AQEKNIE----IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +   N           D SL+  +      +   + NL+SNA+++T  GG++ V     +
Sbjct: 305 SAVMNPASEPLQHLTFDSSLAGDIMGAPNELLSALGNLVSNAIRYTPSGGQIQVRARLLA 364

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S+ D GPGIA   IP +   F +   +      G GLGL I + +   HG +  
Sbjct: 365 DDRAEFSVSDTGPGIAPEHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELK 424

Query: 458 IRSKLREGVEVIAILPNTRV 477
           I S   +G     I P +RV
Sbjct: 425 IDSTPGKGSVFKIIFPASRV 444


>gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1064

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 9/276 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +  I   + +        +  +  L   ++         ++ AE  + AKS FLA+MSHE
Sbjct: 546 YIAIKADITEQRKNQEELEKYRTGLERLVQQRTQELAVAKEAAEVASRAKSTFLANMSHE 605

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAI+G   ++E   +    N   ++ +  IH + +HLL+++N++LDLS+IEAG+ 
Sbjct: 606 IRTPMNAIMGLGYLLEQSPL----NTEQQDKVRKIHGAAKHLLSILNDVLDLSKIEAGKM 661

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L   A S  + +     M+   AQ K + +  + D        D   +RQ ILN   NA
Sbjct: 662 TLDRCAYSPAEELTAVASMIGEDAQRKGLTVITETDDLPPFTIGDPTRLRQAILNFAGNA 721

Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           VKFT   G + +       +        S+ D GPGIA      + T+F Q   +     
Sbjct: 722 VKFT-EHGSIRLRGEIAETQPDNYLLRFSVSDTGPGIAPELQARLFTAFEQADSSSTRRL 780

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            G GLGL I++ +    GG   + S L +G      
Sbjct: 781 GGTGLGLAISRHLSHLMGGDAGVDSTLGQGSTFWLT 816


>gi|23012953|ref|ZP_00052923.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 666

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 9/262 (3%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E ++ + +  E R  AE+   AKS FLA M HE+RTPLN +LG + ++    +    +  
Sbjct: 128 ERKMGEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLETDL----DPR 183

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K +   +  SG+ LL L+N+ILD SR++A    L+     ++D V E  ++L  R  EK
Sbjct: 184 QKSFTETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLTSRVAEK 243

Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQY 402
           ++ +  +    +  V   D   +RQ++ NL+ NA+KFT  GG + ++V       G+   
Sbjct: 244 DLTLTTRFGTGVRRVVAGDRLRLRQILFNLVGNAIKFTDHGG-IEISVEPLAVERGQVLR 302

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             IKD G GI       + T F QG         G GLGL I + +    GG+    S  
Sbjct: 303 FLIKDTGIGIGPEIGARLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGEIGYDSLP 362

Query: 463 REGVEVIAILPNTRVLNFIPED 484
            +G      LP         E 
Sbjct: 363 GQGTTFRVDLPLPPSEAPSAEP 384


>gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 616

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK+  +A++SHE+RTPL ++     ++  +T+G L      E I       + LL ++N+
Sbjct: 382 AKTNLVATVSHEIRTPLTSVRMVLHLLLEKTVGVLT-PKQSELIETARDDSERLLRILND 440

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LDL+R+E G  +L +   S  ++VR    ++   A  + + +  ++DP L  VW D + 
Sbjct: 441 LLDLTRLEQGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEVDPELPLVWVDRQR 500

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           +  V  NLL+NA+K++ IG RV  +  W+        ++D GPGI E     +   F + 
Sbjct: 501 IDHVFTNLLNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDHIFDRFYRV 560

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               K+   G GLGL IA+ I+  HGG+  +RS   +G E   IL
Sbjct: 561 PGQTKT---GAGLGLSIAREIVIAHGGRIGVRSWPGQGSEFYFIL 602


>gi|319791743|ref|YP_004153383.1| integral membrane sensor hybrid histidine kinase [Variovorax
           paradoxus EPS]
 gi|315594206|gb|ADU35272.1| integral membrane sensor hybrid histidine kinase [Variovorax
           paradoxus EPS]
          Length = 626

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 161/438 (36%), Gaps = 20/438 (4%)

Query: 55  FVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ 114
               +  +            W    L+   A   + +   +  ++      W        
Sbjct: 49  LGAALGIVMYLHRPRWWILAWMAAHLSFGLALFLMPRWHADVPLQD--TIRWARRHSRTV 106

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF-MLPYAVFLSFFPVVVA 173
             + +       +          T      ++I     A+     L  A++    P++ +
Sbjct: 107 TLVSMATATAPWLFISADDL--PTTSVLTVVVIGSCARAMQLLWPLKPALYGYTLPMMAS 164

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L          + + LA      L F   +     K     L  + E + L A+L V  +
Sbjct: 165 LIAALAWQGDAMHLFLAVFSLGYLLFTLRVGGQQHKLLTDSLVLRFENEALAAQLGVQIA 224

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                   AE  +  K+RFLA+ SH+LR PL+AI  F   +E E      +   +  +  
Sbjct: 225 -------AAERASAEKTRFLATASHDLRQPLHAIALFGAALENELREHHGSRNAQRLMRA 277

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           ++  G  L  +    LD+SR++AG      + +SL  + R    M   +A+++ +++  +
Sbjct: 278 VNALGNSLDTM----LDVSRLDAGVITPDIAPVSLDAMFRSLNHMFAAQAEQRALQLRVR 333

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  V +D + + +++ NL+ NA+K+TA GG V V      G   +I + D G GIA
Sbjct: 334 ASG--LWVHSDPQLLYRMLSNLVDNALKYTAHGG-VSVRA-RARGGVVWIEVLDTGIGIA 389

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   V   + Q     +   QG+G+GL I + +         + S++  G      LP
Sbjct: 390 PEQQDRVFEEYYQVQNPGRDRAQGLGIGLSIVERLSRLLDHPVQVTSRVGRGTRFRLQLP 449

Query: 474 NTRVLNFIPEDNHESTQY 491
                    +    S Q 
Sbjct: 450 MVAAAPQHEQQAAASMQQ 467


>gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
          Length = 1210

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E         + +++A++ N AKS FLA++SHE+RTP+NA++G  E+          +
Sbjct: 687 ISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD 746

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +   H S + LL LI +ILD+ RIE+G   L+   + L  +V     +   +A+
Sbjct: 747 ---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQAR 803

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  +I P+    V  D    +QV+ NL+SNA+KFT   G+V + V          
Sbjct: 804 QKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFT-EHGQVRICVRLLDDGTSTP 862

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D+G GI   ++  +   F Q +   + A  G GLGL I +++    GG   +
Sbjct: 863 AVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSM 922

Query: 459 RSKLREGVEVIAILPNTRVL-NFIPEDNHESTQ 490
           +S    G +V   +P  RV     P+   E   
Sbjct: 923 KSLEDVGTQVRLKMPLQRVDGAEQPKPLPEQLD 955


>gi|313906156|ref|ZP_07839504.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
 gi|313468995|gb|EFR64349.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
          Length = 1045

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 12/233 (5%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AKS FLA+MSHE+RTP+NA+LG  E+I  E            Y   I  +G  LL LI
Sbjct: 438 NQAKSHFLANMSHEIRTPINAVLGMDEMILRECEDV----NILLYAESIKTAGNTLLGLI 493

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364
           N+ILD S+IEAG+ E+      L  ++ + + M++ RA++K ++I  ++D  +  + + D
Sbjct: 494 NDILDFSKIEAGKMEILPVEYDLSSVINDLVSMVESRAEKKGLQIILELDEKMPKLLYGD 553

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIP 418
           E  ++QVI N+L+NAVK+T   G V + +G+    G+       +S+ D G GI   ++ 
Sbjct: 554 EIRIKQVITNILTNAVKYTEK-GSVTLHMGYEKVDGEPDEIWMSVSVTDTGIGIKPEDLE 612

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            + + F +         +G GLG+ I + ++   G   +++S   EG      
Sbjct: 613 KLFSEFERIEEKRNRNIEGTGLGMNITKKLLEMMGSFLVVKSVYGEGSTFSFR 665


>gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 922

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 16/261 (6%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           ELE  K + +E   + E  +  KS FL++MSHELRTPLN++L  ++++       L ++ 
Sbjct: 490 ELENIKVVLEEKASQLELNSRYKSEFLSNMSHELRTPLNSLLILAQMLAENDNSNLTHKQ 549

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             EY   I  SG+ LL+LIN+ILDLS+ EAG+ ++    + L  I           A +K
Sbjct: 550 V-EYAETILSSGRDLLSLINDILDLSKAEAGKMDVCPRVVKLKAIQEFLKRQYLPVAIQK 608

Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------ 399
            I    ++   L      DE+ + Q++ NLLSNA KFT   G V +++     R      
Sbjct: 609 GITFTIQLKNGLPETFITDEQRLLQILKNLLSNAFKFTEQ-GSVLLSIRKAEKRFTDKQI 667

Query: 400 -------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      S+ D G GI   +   +   F Q          G GLGL I+  I    
Sbjct: 668 LFDNASTMLSFSVSDTGVGIPRDKHIMIFEEFRQADGTTSRKYGGSGLGLSISNKIAMLL 727

Query: 453 GGQFLIRSKLREGVEVIAILP 473
           GG   + S+  +G      LP
Sbjct: 728 GGFIELESEEGKGSTFTLYLP 748


>gi|229150218|ref|ZP_04278440.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550]
 gi|228633337|gb|EEK89944.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550]
          Length = 351

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 149/347 (42%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 10  FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 69

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 70  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 125

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 126 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 182

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 183 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 240

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I D+G GI E +   +   F +
Sbjct: 241 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIHDSGIGILEEQKQHIFERFYK 299

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 300 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346


>gi|182414748|ref|YP_001819814.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841962|gb|ACB76214.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 806

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 13/267 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG---FSEVIELETM 279
             I   +  ++   + +  AE  N AKS FLA++SHELRTPL  ++    + E       
Sbjct: 409 RDITHRKSVEAALVQAKDEAERANRAKSDFLATLSHELRTPLAPVMLTLPYVET------ 462

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P      + ++  I R+ +  + LI+++LDL+R+E G+ +L ++ + L  ++   + + 
Sbjct: 463 HPELPAELRSHVESIRRNVELEIRLISDLLDLTRVERGKLQLEKTEVDLHGVLHSVVEIC 522

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +   + +++ I  ++  +   V  D   + QV  NLL+NA KFT   GR+ V      G 
Sbjct: 523 R---EAESVPITLELAATRHYVHGDPARLHQVFWNLLTNAQKFTDRSGRIMVLTRQAEGH 579

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S+ D G G+       +  +F QG       + G+GLGL I + I+  H G     
Sbjct: 580 AISVSVTDTGVGLTPELRSRLFVAFEQGESKSARQKGGLGLGLAICRKILEMHAGTITAW 639

Query: 460 SK-LREGVEVIAILPNTRVLNFIPEDN 485
           S+    G     +LP +  +   P ++
Sbjct: 640 SEGTGRGATFTVVLPTSPRVATPPAED 666


>gi|194334444|ref|YP_002016304.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
 gi|194312262|gb|ACF46657.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
          Length = 676

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 144/300 (48%), Gaps = 15/300 (5%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSH 258
            +   LF++         EK ++     V + L D   + R  AE  N AKS FLA++SH
Sbjct: 235 RLEEALFEARSLNQKLIDEKRNVEENERVQQELIDTLKKARVEAESANKAKSEFLANISH 294

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPL+A++G +E++   ++        + Y   I  S   LL LIN++LD SRIEAG 
Sbjct: 295 EIRTPLHAVIGMTELLLESSLAK----DQQYYADTISSSAHLLLLLINDLLDFSRIEAGY 350

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            +  +    +  ++ + + +++  A  K + +  ++D  LS  +      +RQV++NL+ 
Sbjct: 351 IDQEKEDFDMRRLIGDIMSLMKDSASRKRLLLDSRVDERLSFCLTGYPGYLRQVLMNLIQ 410

Query: 378 NAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NAVKFT   G V + V   S          S+KD G GIAE ++  +   F Q   +   
Sbjct: 411 NAVKFTYK-GMVSLHVTLLSETPEHVSLEFSVKDTGVGIAEEQLKVIFHRFTQIDASSTR 469

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            E G GLGL I + ++   GG+  + S+  EG +    L   +      + +  S    C
Sbjct: 470 KEGGTGLGLAIVKQLVTFMGGEVSVDSRQGEGSDFRFSLTFDKAGEA--KADQSSADLSC 527


>gi|315221423|ref|ZP_07863344.1| PAS domain S-box [Streptococcus anginosus F0211]
 gi|315189542|gb|EFU23236.1| PAS domain S-box [Streptococcus anginosus F0211]
          Length = 450

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ +++++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVSDLLSL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L     +    +   +      + +  +K  EI +    +   V  D   M
Sbjct: 269 SRIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+++NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNIINNAIKYSPDGGKITVSMKTTDTQMI-LSISDEGLGIPKKDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 KARSRAQGGSGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432


>gi|315129764|gb|EFT85754.1| Histidine kinase [Staphylococcus aureus subsp. aureus CGS03]
          Length = 583

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +     +  KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIKESLAVVLDESKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +NE+L+++R++A    +++    +  ++ +  I  + +A +  + +           + D
Sbjct: 414 VNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-D 472

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              M QV+ NL+ NA ++T  G  + +T          + IKD G GIA   +  V   F
Sbjct: 473 MDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDI-LYIKDTGTGIAPEHLQQVFDRF 531

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   A    +QG GLGL I + I+  HGG   ++S+L +    I  LP 
Sbjct: 532 YKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKDTTFIIKLPK 581


>gi|298247623|ref|ZP_06971428.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550282|gb|EFH84148.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 775

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 8/251 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK  E     K  F++  SHEL+TPL A+   ++ +  + +   +       +  +  S
Sbjct: 531 ARKELE---QRKDAFISMASHELKTPLTALKMQAQ-LARKRLERQSPHEAATALSRVEGS 586

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q L  LI E+LD+S+I+AGR E  +  + L  ++ E    +Q  +    I +      +
Sbjct: 587 IQQLERLIGELLDVSKIQAGRLEYLQEIVDLDTLLHEVTDTMQQISTTHTIVVR---GAT 643

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L S+  D+  + QV +NL+SNA+K++     V + +  +      I ++D+G GI + + 
Sbjct: 644 LCSLEGDKDRLGQVFINLISNAIKYSPGAETVEIDLSASPE-AATIRVRDHGQGIPQEQR 702

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             +   F + S   + A  G+G+GL I   I+ +HGG   + S++ +G      LP  R 
Sbjct: 703 DKIFERFYRVSGPNQKAIPGLGMGLYIVAEIVRHHGGTITVESEVGKGSTFSVTLPLKRS 762

Query: 478 LNFIPEDNHES 488
           L        E+
Sbjct: 763 LKPESTSVPET 773


>gi|229155590|ref|ZP_04283698.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
 gi|228627908|gb|EEK84627.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
          Length = 438

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I     
Sbjct: 213 EKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETD 270

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+    
Sbjct: 271 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--I 328

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   ++Q+ LN++ NA+K++   G+V++    + G+   I +KD G GIA+  +P 
Sbjct: 329 ELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQ-AVIEVKDEGMGIAKEHLPY 387

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 388 IEQSFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 438


>gi|49477450|ref|YP_036123.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329006|gb|AAT59652.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 351

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 143/350 (40%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + +  + 
Sbjct: 7   LKVTGAIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILLWILI 66

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 67  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I      L  
Sbjct: 123 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 180 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 297 FFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346


>gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 986

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 9/282 (3%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRF 252
           A      ++  L                +   +  A++  +E ++RAE   E + +K+ F
Sbjct: 277 AGFLLMGLSVRLEYDERYRGFMGLIAGHISTAIANARAY-EEEKRRAETLAEVDRSKTVF 335

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
            +++SHE RTPL  +LG  E               +E +  +HR+G  L  L+N +LD S
Sbjct: 336 FSNVSHEFRTPLTLMLGPVE---DVLASDRLEGEEREALERVHRNGLRLFKLVNTLLDFS 392

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R+EAGR + S     L  +             +  + +  +  P  + +W D +   +V+
Sbjct: 393 RLEAGRVQASYQPTDLASLTVGLASAFDSAVTKAGLRLVVECPPLPTPIWVDPEMWEKVV 452

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LNL+SNA+KFT   G + V + W   +   +S++D G GI   E+P +   F +   A  
Sbjct: 453 LNLVSNALKFTFE-GEIGVALRWKGSQ-VELSVRDTGTGIPPEELPRIFERFHRVHGAKG 510

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + +G G+GL + Q ++  HGG     S L  G      LP 
Sbjct: 511 RSHEGSGIGLSLVQELVRLHGGTVRADSTLGRGSTFTVSLPA 552



 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 132/351 (37%), Gaps = 22/351 (6%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAG 191
             L   +     +A    AL          +      P +   +            ++  
Sbjct: 632 RRLLESRFTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFALLREFRAKPRTAAVPF 691

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA--EEENLAK 249
           +L +A +        L       L       +L+A +E    +    R+RA  E     +
Sbjct: 692 ILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVE---GVLRLARERAKRERLAQER 748

Query: 250 SRF----LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + F    +  +SH+LR PL AI   +  +      P   E  +  I  I  + +    +I
Sbjct: 749 ADFEQHLIGIVSHDLRNPLAAITLSAATLLRR---PELEERQRRPISRIFTAAERANRMI 805

Query: 306 NEILDL--SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            ++LD   +R+  G   +   A+ +  + ++ +  LQ  A      I      +  +VW 
Sbjct: 806 RDLLDFTQARL-GGGLPIQPKALDVHALSQQVVDELQ--AAHPGRVIELDRKGTGQAVW- 861

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     QV+ NL+SNA+ ++  G  V V V   +G G  + + ++G  I    +P +   
Sbjct: 862 DGDRTAQVLTNLISNALHYSRAGTPVRVRVFEEAGDGV-LEVHNDGAPIPAELLPRLFQP 920

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +G     +  + VGLGL I   I+  HGGQ  I S  +EG      +P 
Sbjct: 921 MQRGESEANNIGRSVGLGLYIVDHIVRAHGGQVEIHSVEKEGTTFTVRMPL 971


>gi|324326022|gb|ADY21282.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 356

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 145/350 (41%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +   LS+           F   +++     I  + +  + 
Sbjct: 13  LKVTGAIIALFSFLTIIWSTAFYVLSSILDALAIHLSPFVTYLISDILSFIFMILLWILI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  + Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKREHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIP 352


>gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
 gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
          Length = 1466

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 4/230 (1%)

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            +E +  K RF  ++SHELRTPL  I G  E +          +  +E +  I R+   +L
Sbjct: 933  QEISDIKLRFFTNISHELRTPLTLITGPVEQLLNN---KTIEDKAREQLLIIERNANRML 989

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
             L+N+ILD  +I+  + ++      L+  +R+ +      A E++I +          +W
Sbjct: 990  RLVNQILDFRKIQNKKMKMHVQQFDLLPFIRQIMENFNYLANEQHINLSLNAPEHPVILW 1049

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            AD   + ++I NL+SNA K+T     + V V   + +   ISI D G G+ + ++  +  
Sbjct: 1050 ADIDKLEKIIFNLISNAFKYTPKEKNIIVKVT-ENEKIISISIIDQGIGMTKNQLKRLFI 1108

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F   S      ++  G+GL + + ++  H G   + S+  EG      L
Sbjct: 1109 RFETFSDQHIHTQESTGIGLSLTKELVEMHNGTITVESQPNEGSCFTVNL 1158


>gi|314936382|ref|ZP_07843729.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
 gi|313655001|gb|EFS18746.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
          Length = 588

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 4/231 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +   N    KE +  +    + L  L
Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPN--EIKESLSIVLDETKRLNRL 412

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA- 363
           +NE+L+++R++A    +++    ++ ++R+  +  + +AQ+  + I    + +   +W  
Sbjct: 413 VNELLNVARMDAEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNY 472

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA ++T  G  + +T      + Q ++I D G GIA   +  V   
Sbjct: 473 DADRIDQVLTNLIDNATRYTHPGDSITITAN-KDSQYQILNINDTGSGIAPEHLDHVFDR 531

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +    +QG GLGL I++ I+  HGG   + S + +G   I  LP 
Sbjct: 532 FYKVEASRTRGKQGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 582


>gi|228475575|ref|ZP_04060293.1| sensor protein YycG [Staphylococcus hominis SK119]
 gi|228270357|gb|EEK11792.1| sensor protein YycG [Staphylococcus hominis SK119]
          Length = 608

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       N      ++         ++
Sbjct: 369 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDENLAP--SFLSVTREETVRMI 426

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 427 RLVNDLLQLSKMDNETEQITKEIVDFNMFINKIINRHEMAAKDT--TFVREIPNETIFTE 484

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 485 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 544

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP  
Sbjct: 545 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 598


>gi|228475987|ref|ZP_04060695.1| sensor protein ResE [Staphylococcus hominis SK119]
 gi|228269810|gb|EEK11290.1| sensor protein ResE [Staphylococcus hominis SK119]
          Length = 589

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 4/231 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K  F+A++SHELRTP++ + G++E I    +   N    KE +  +    + L  L
Sbjct: 356 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPN--EIKESLSIVLDETKRLNRL 413

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA- 363
           +NE+L+++R++A    +++    ++ ++R+  +  + +AQ+  + I    + +   +W  
Sbjct: 414 VNELLNVARMDAEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNY 473

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV+ NL+ NA ++T  G  + +T      + Q ++I D G GIA   +  V   
Sbjct: 474 DADRIDQVLTNLIDNATRYTHPGDSITITAN-KDSQYQILNINDTGSGIAPEHLDHVFDR 532

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +    +QG GLGL I++ I+  HGG   + S + +G   I  LP 
Sbjct: 533 FYKVEASRTRGKQGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 583


>gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 846

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 12/247 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS F+A++SHE+RTP++ ILG S ++    +    +   +EY+  +  S + LL +IN
Sbjct: 363 RAKSEFVANVSHEIRTPMHGILGMSSLLLKTPL----DGRQREYVSTLKSSAESLLKIIN 418

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADE 365
           +ILD S+IEAG+  +   A S + +++  + + Q RA EKN+++     +    ++  D 
Sbjct: 419 DILDFSKIEAGKLAIEAVAFSPVALMQGVVALFQARALEKNLQLTLALHESPPPALLGDP 478

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLT 422
             +RQ++LNL+ NA+KFT     V ++  + +   +     S+ D+G G++      +  
Sbjct: 479 TRIRQILLNLVDNAIKFTDRD-HVELSGSFETLGDEVACRFSVTDSGIGMSAETQAGLFQ 537

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRV-LN 479
           +F Q   +      G GLGL I+  + A  GG+  + S    G        LP T + L 
Sbjct: 538 AFSQADSSTTRRYGGTGLGLAISSQLAALMGGELTVESAPGRGSRFTLSVRLPTTDLPLA 597

Query: 480 FIPEDNH 486
            +P  + 
Sbjct: 598 ELPAPSS 604


>gi|300854763|ref|YP_003779747.1| putative two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434878|gb|ADK14645.1| predicted two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 467

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 136/307 (44%), Gaps = 6/307 (1%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               +   ++    + +    I    +    L    YIT      ++  L  + E  +  
Sbjct: 163 FMKILFGVMAAADFIGIIASIILGYIVSKRMLKPIDYITKTAENISINNLKERIEVKEPE 222

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            ELE   S  ++   R +E    +++F++  SHELRTP+  I G++ ++  +  G  + +
Sbjct: 223 DELERLASTFNKMIDRLQEAFNKQAQFVSDASHELRTPVAVIQGYANLL--DRWGKDDRD 280

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             ++ I  I     ++ NLI ++L L+R ++G   + +    L +++ E +   ++    
Sbjct: 281 ALEKSIYGIKLEAANMANLIEKLLFLARGDSGTQLIEKKKFWLNELIDEVVKESRII--- 337

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           +   +          V AD K ++Q++   + N++KFT   G++ +      G+   IS+
Sbjct: 338 EQNHVISSSRNDTVRVCADYKMIKQMLRVFIDNSMKFTPEHGKIDIN-SEVQGKVVKISV 396

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI + EI  +   F     +    + G GLGL IA+ I+  H G   + S+  +G
Sbjct: 397 SDTGIGIPKEEIQNIFNRFYIVDKSRSKEKGGTGLGLSIAKWIIDMHQGAIDVESQEGKG 456

Query: 466 VEVIAIL 472
            ++   L
Sbjct: 457 TKITVTL 463


>gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07]
 gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07]
          Length = 995

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 11/250 (4%)

Query: 229 EVAKS-LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
           E A++   +  R+ AE    AK RFLA MSHE+RTP+N +LG  E+++   +        
Sbjct: 355 ERAQADALEAARQAAESALRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTRL----EREQ 410

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +     SG+ LL++++++LD ++IEAG   ++ +   L ++    + +L  RA E++
Sbjct: 411 QRMVTLAQESGRALLHILDDVLDHAKIEAGHLAITPAPTDLRELFDSTVGLLASRAHERS 470

Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402
           + +   +D ++  +V  D   +RQV+ NLLSNA+KFT   G V ++              
Sbjct: 471 LAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKFTER-GSVRLSAACVEAAADTVRLI 529

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I + D G GIA     T+ T F Q          G GLGL I++ +    GG   + S  
Sbjct: 530 IRVSDTGIGIAPEAQATLFTPFVQADSRTTHRHGGTGLGLAISRQLARLMGGSLDMDSTP 589

Query: 463 REGVEVIAIL 472
             G  +   L
Sbjct: 590 GVGTTLTLRL 599


>gi|206970639|ref|ZP_03231591.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206734275|gb|EDZ51445.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 357

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 13  LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 72

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 73  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ +     + E  K Y+  I      L  
Sbjct: 129 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQEDNF---SEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352


>gi|125973318|ref|YP_001037228.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|256006167|ref|ZP_05431083.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281417520|ref|ZP_06248540.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125713543|gb|ABN52035.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|255989870|gb|EEU00036.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281408922|gb|EFB39180.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|316940450|gb|ADU74484.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 403

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 5/225 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+A  SHELRTPL  I    E++           +  +++G+I    + +  L++++
Sbjct: 178 QTAFIADASHELRTPLAVINSNLEIVMENE--NETVGSQMKWLGNIQSELERMKKLVDDL 235

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L L+R +A   E+ +    L  +V +         Q+K++E       ++   + +E  +
Sbjct: 236 LFLARADAED-EMPKEYFDLSRLVHKIYDEFTPLCQKKSLEFLLDAKDNIV-FYGNEFRI 293

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q+I  LL NA+KFT  GG++ + +   +     +S+ D G GIA+  I  +   F +  
Sbjct: 294 KQLITILLDNAIKFTGEGGKIILKLKVHA-NSIQLSVSDTGEGIAKEHIDKIFDRFYRVD 352

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +      G GLGL IA+ I+  H G   + S++  G E    LP
Sbjct: 353 KSRSRNHGGSGLGLAIAKCIVNEHKGTIDVFSEVSRGTEFTVSLP 397


>gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1187

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 131/266 (49%), Gaps = 7/266 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +       + A + N AKS FLASMSHE+RTP+ AI+G  E+    T+     
Sbjct: 671 ITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGLLELEREHTLRRGET 730

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +   HRS   L+ LI E LDL+RIEAG  +LS +   L D+    I +   +A+
Sbjct: 731 PS--HGLQVAHRSATELVALIGESLDLARIEAGSLQLSLAITPLHDLFDGVIELFSAQAR 788

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           EK++E+  +         W D   +RQV+ N+L NA+KFT  G    +V VT   +    
Sbjct: 789 EKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVVVKVDVTSESSGSTR 848

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             ISI+D+G GI       V   F Q S    +   G GLGL I + ++    G   + S
Sbjct: 849 VRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLHS 908

Query: 461 KLREGVEVIAILPNTRVLNFI-PEDN 485
           +  +G  V   LP TR+   + P ++
Sbjct: 909 EPGQGTLVTVDLPLTRLNEPVSPTED 934


>gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 697

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 10/321 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               LP           +A +   ++++ V     AG                 +   + 
Sbjct: 378 GGATLPGFDLSPANTARIAGAAALVLALTVGASVFAGTRLVRPLHALTGAAQRMRDGERP 437

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            S     DD +  L  A +     R R EE+  A    ++ ++HELRTPL+ I G+ E  
Sbjct: 438 ESVPVSGDDEVGRLAAAFNDMSAHRARLEEQRKA---MVSDVAHELRTPLSNIRGWLEAA 494

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +     P        ++  +      L ++I+++ DL+  +AG   L    +   +++ +
Sbjct: 495 QDGLADPDPA-----FVSSLLEEAVLLQHIIDDLQDLAAADAGVLRLHPEPVEARELLGQ 549

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV- 393
                Q RA+   + +         ++ AD   +RQ + NL+SNAV+ T  GGRV +   
Sbjct: 550 VAAAHQARAENAGVTLTVAGAAPGPALRADPVRLRQAVSNLVSNAVRHTPEGGRVTLRAY 609

Query: 394 -GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                     + + D G GI   ++P V   F +   +      G GLGL I + ++  H
Sbjct: 610 ACEEEAGTVAVEVADTGSGIPAEDLPHVFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAH 669

Query: 453 GGQFLIRSKLREGVEVIAILP 473
           GG     S + EG   +  LP
Sbjct: 670 GGTVDAASVVGEGSTFVLRLP 690


>gi|253682578|ref|ZP_04863375.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562290|gb|EES91742.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 651

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 2/234 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            K  +  +  K  F   +SHELRTPL  I    + +  +          +  +  + ++ 
Sbjct: 387 NKELQNISKMKDEFFNMISHELRTPLTIINSSVQ-LARDIYKEEITRNIERVLLRVDQNC 445

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + LL LIN ILD+S+ EAG  +L  S   ++ +    +  + + A+ + I++    +   
Sbjct: 446 RRLLKLINNILDISKAEAGFLQLQYSDFDIVVVTENIVSSVSIYAKSRGIQLIFDTNKEE 505

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V  D+    ++ILNLLSNA+KFT  G +++VT          I +KD G GI + ++ 
Sbjct: 506 KLVALDKDKYEKIILNLLSNAIKFTPKGRKIYVTT-LIENNKVQIKVKDQGIGIEKEDLK 564

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           T+   F Q      +  QG GLGL + ++++    G   + SK+ EG E     
Sbjct: 565 TIFNRFIQIRNNTTNCVQGTGLGLALVKNLVELMQGNIKVNSKINEGTEFTITF 618


>gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
 gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
          Length = 563

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 5/233 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AK+ FLA+++HELRTPL +I+ + ++I+  T  P + E   + +  + R+ + L  LI
Sbjct: 324 DKAKTDFLATVNHELRTPLTSIMAYLDMIQESTEQPGSAE-IHQMLDIVVRNTERLRTLI 382

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++L +SR       +  + + L   +      L+  A+ +N+ I     P    + ADE
Sbjct: 383 EDMLSVSRNGLDDTLMHLTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADE 442

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHV----TVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             ++QV  NL+SNA+KFT  GGR+ V           R   + + DNG GI+  EI  V 
Sbjct: 443 IQLQQVFTNLVSNAIKFTPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVF 502

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           T F + S A+  A  G GLGL I + I+A HGG   + S L  G  V   LP 
Sbjct: 503 TRFYRASNAMSGAIPGTGLGLAITKDIVARHGGTIDVASTLGAGTTVTVSLPL 555


>gi|222053139|ref|YP_002535501.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
 gi|221562428|gb|ACM18400.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
          Length = 478

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 6/232 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    K   ++++SHE+RTPL A+LGF+E +    + P      K Y+  I++    L  
Sbjct: 252 EIEQMKDEMISAVSHEMRTPLTAMLGFTEYLLENEVDPS---QLKNYLNTIYKETARLKE 308

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI   LDL +I A         + +  ++++   +  L        +  +   ++  +  
Sbjct: 309 LIGNFLDLQQINARMTTYRMHPLDVCLLIKDAAGLFALDYDSG--RLVVQCPRNIPPLQG 366

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           DE  + QV+ NL+SN +K++    RV V       +   + +KD G GI       +   
Sbjct: 367 DEARLHQVLTNLISNGLKYSQAPARVTVGAEAEGDQ-VVVWVKDEGCGIPPELQEKIFEK 425

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           F +     +    G GLGL + + I+A HGG+  + S++  G      LP  
Sbjct: 426 FYRIDNTDRRHIGGTGLGLALVREIVAAHGGRVWVTSEVGRGSTFFISLPTA 477


>gi|52842393|ref|YP_096192.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629504|gb|AAU28245.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 828

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + ++ AEE N  K+ F+A+MSH+LRTPL+ ++G +E+++ +      +
Sbjct: 265 ITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQV----TD 320

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY-ELSESAISLIDIVRECIIMLQLRA 343
               +Y   I    Q LL+L++ ILD+  +   +  EL  +   + + + E + +     
Sbjct: 321 PVQVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMPSI 380

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSG 398
           + K +++   ID  +   +  D   + ++ILNLL NA+KFT   G + + V         
Sbjct: 381 KLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDS-GYIAIDVKLLELNNES 439

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y +I D G GI E +   +   F +   +     +G G+GL I QS +   GG+  +
Sbjct: 440 GLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQV 499

Query: 459 RSKLREGVEVIAILP 473
            S+   G      LP
Sbjct: 500 NSEPGVGTTFYFELP 514


>gi|54298075|ref|YP_124444.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
 gi|53751860|emb|CAH13284.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
          Length = 827

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + ++ AEE N  K+ F+A+MSH+LRTPL+ ++G +E+++ +      +
Sbjct: 265 ITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQV----TD 320

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY-ELSESAISLIDIVRECIIMLQLRA 343
               +Y   I    Q LL+L++ ILD+  +   +  EL  +   + + + E + +     
Sbjct: 321 PVQVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMPSI 380

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSG 398
           + K +++   ID  +   +  D   + ++ILNLL NA+KFT   G + + V         
Sbjct: 381 KLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDS-GYIAIDVKLLELNNES 439

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y +I D G GI E +   +   F +   +     +G G+GL I QS +   GG+  +
Sbjct: 440 GLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQV 499

Query: 459 RSKLREGVEVIAILP 473
            S+   G      LP
Sbjct: 500 NSEPGVGTTFYFELP 514


>gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1111

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 9/239 (3%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+GFS+++  E +     +  K ++  I+RS + LL+L+N+ILD +++
Sbjct: 541 NMSHEIRTPMNAIIGFSDLMLGEAL----RDEQKSHLTTINRSARSLLHLLNDILDSAKL 596

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           + G+ +L      + + +   +    L A+ K +++   +D S++       + MRQV+ 
Sbjct: 597 DKGKLDLDYRDFLIREELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRGVPERMRQVLN 656

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ NAVKFT   G+V + V  + G   Y  + D G G+ + ++  V   F Q   ++  
Sbjct: 657 NLIGNAVKFTHE-GKVEIAV-RSEGELVYFDVSDTGIGMTKAQLDNVFDPFSQADASMSR 714

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
              G GLG  I++ ++   GG     S+  +G      LP   V   + E +      K
Sbjct: 715 KYGGTGLGTTISKQLVELMGGNICATSEEGKGTTFTFRLPLEVV--ALDETSKADADAK 771


>gi|254254025|ref|ZP_04947342.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898670|gb|EAY70513.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 477

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 148/332 (44%), Gaps = 15/332 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYI 203
           + + ++   L    +P +      P+                 + A   +  A      +
Sbjct: 10  VTMLIAPRWLRLHPVPTSFANLRAPIGPLDVLCMRGDRSCFRATFAASPIVDAQGRSAGL 69

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L ++  + L  + +   L          + + R +A+E N  K   LA++SHELRTP
Sbjct: 70  SMTLREARERRLGERRDLRSLRG--------ARDARVQADESNRMKDELLATVSHELRTP 121

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I G+ EV+       L     ++ +  I RS + L  ++ ++LD S +  GR +L  
Sbjct: 122 LNVIYGWVEVLRSVDGQGLA----QQAVDAIDRSARSLSRMVGDLLDASSLATGRLQLER 177

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L+ IVRE    L   AQ   I +          + AD + +RQV+ NLLSNA+K+T
Sbjct: 178 VPVDLVRIVRETARELAATAQANGIVLATDCAMPTCVIPADGERLRQVLSNLLSNAIKYT 237

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGRV V++   +G    +S+ D G GIA   +P +  +F +   A  S ++G+GLGL 
Sbjct: 238 PPGGRVDVSLTR-AGEHVRLSVADTGQGIAPEHLPHLFDTFNRPHGAPTSPKRGLGLGLS 296

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           I ++I   HGG     S        V   LP 
Sbjct: 297 IVRNIAHLHGGDVSATSDGAGRSTTVTVTLPA 328


>gi|329929173|ref|ZP_08282959.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328936850|gb|EGG33285.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 605

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 25/246 (10%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TPL A+ GF+E +     G  + +T + ++  I+   +
Sbjct: 363 RRLE---RMRSEFVANVSHELKTPLAAVKGFAETLLGG--GVTDEKTSRSFLQIIYDESE 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI +IL+LS+IE+ R ++  S I L         M++  A++K I +   +   L 
Sbjct: 418 RLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMMRTVAEKKRISLELDVPEEL- 476

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAE 414
            +  DE  +RQ+ +NLLSNA+ +T  GGRV +T        ++       +KD+G GI +
Sbjct: 477 FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHNNGSADDLVEFVVKDSGIGIPK 536

Query: 415 GEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            ++P +   F +   A                    I + ++  H G   + S+L  G  
Sbjct: 537 KDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGTIKVESELGIGSS 589

Query: 468 VIAILP 473
            I  LP
Sbjct: 590 FIIELP 595


>gi|254417945|ref|ZP_05031669.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196184122|gb|EDX79098.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 630

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 174/454 (38%), Gaps = 33/454 (7%)

Query: 39  TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDI 98
           T+                  VA + T      I   W      +    L    +V     
Sbjct: 15  TVAARHRRSNLLQRLGLGAAVALVVTPMIGWRICLAWFAAYGLMQGLELLAFARVNRDGD 74

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT---IYKSATLLIALSISALS 155
               ++  R+   +   A    +  L++       P       +   A +L ++  S  S
Sbjct: 75  GKIPLWG-RVTACLSLFASASLFGSLSIPMWLIGGPLGGVCAALMLPALMLFSMINSPRS 133

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKI 214
             +L  ++      ++      A        +  A      + FFT I++  + ++    
Sbjct: 134 KSILVSSLTPPMLYLLAVPFLAAWFGAPPPLVMTAAAAVVLVIFFTIISWQKMSEATENQ 193

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL-GFSEV 273
           +   AE + L              R +AEE  +A + FLA++ H+LRTP+ AIL G +E+
Sbjct: 194 MRAHAEAERL--------------RVKAEESLVAHTAFLAAIGHDLRTPIGAILTGAAEL 239

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                     +   +     I  +G  +  L++++LD S+I AGR  +      L   + 
Sbjct: 240 -------QALDANSRSNAHLITDAGLMMKALLDDLLDHSKIGAGRMTVEAVDFDLRATLA 292

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           + + + +   + K +++  +    +   V  D   +RQV+ NL+SNAVKFT   GR+ + 
Sbjct: 293 QTLRLWRGPIEAKGLKLRVEGAARMPRSVKGDAMRIRQVMNNLMSNAVKFTPQ-GRITLR 351

Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           +   +         + ++D GPG+   ++  +   F Q +  + +   G GLGL I++ +
Sbjct: 352 LDAWAEEPSGYCVLLEVQDTGPGMTGDQLARLFNPFDQTAEGVSARYGGSGLGLAISRDL 411

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +   GG+   RS   +G      L      N  P
Sbjct: 412 VELMGGRLTARSAPGQGASFTVSLSLPFGENAAP 445


>gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
 gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
          Length = 1143

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 128/307 (41%), Gaps = 12/307 (3%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDLIAELEVA 231
           L T A         +LA   +        +   L  F+                    +A
Sbjct: 274 LPTGAWQRPPTRAAALAISPSGETGRAGVLIVGLNPFRLFDDDYRGFLHLVAGQISASIA 333

Query: 232 KSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            + + +E ++RAE   E + AK+ F +++SHE RTPL  +LG  E         L+    
Sbjct: 334 NAQAYEEEKRRAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEDALASAERSLSGAD- 392

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
              +   HR+   LL L+N +LD SRIEAGR + S     L  +  +     +   +   
Sbjct: 393 ---LETAHRNAVRLLKLVNALLDFSRIEAGRIQASYEPTDLSALTADLASAFRSAMERAG 449

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           +            ++ D     +++LNLLSNA+KFT   G V +++    G    ++++D
Sbjct: 450 LAFEVDCPALPEPIYVDHDMWEKIVLNLLSNALKFTFE-GTVSISL-RAHGDRADLTVRD 507

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E E+  +   F +   A     +G G+GL +   ++  HGG   + S+L  G  
Sbjct: 508 TGTGIPERELSHLFKRFHRVQGARSRTHEGSGIGLALVHELVRLHGGTIHVTSELSVGTS 567

Query: 468 VIAILPN 474
               LP 
Sbjct: 568 FTVSLPR 574



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 103/252 (40%), Gaps = 16/252 (6%)

Query: 229  EVAKSLSDETRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
                    + R+         N    +F    SH+L+ PL  I   SE IE    G L+ 
Sbjct: 898  RRRIEQLSQHREELIAALAKTNQELDQFAYVASHDLKAPLRGIANLSEWIEESLAGKLDG 957

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            ET  E+I  +    + L  LI+ IL  SR  AGR      ++    ++ E + +L     
Sbjct: 958  ETQ-EHIHLLRGRVRRLEALIDGILHYSR--AGRLRGDVVSVDTGHLLAEVVELLSP--- 1011

Query: 345  EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYI 403
                     I P + ++ A+   M+QV  NL+SNA+K       RV VT    +G     
Sbjct: 1012 --PEGARVDIAPGMPTIAAERVPMQQVFQNLISNALKHARRSDARVEVTCE-DAGAYVEF 1068

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++ DNGPGIA      +   F       +   +G G+GL + + I+ + GG   + S+  
Sbjct: 1069 AVSDNGPGIAPEYHERIWDLFHTLES--RDKVEGTGIGLSVVKKIVQSRGGSVSVSSRPG 1126

Query: 464  EGVEVIAILPNT 475
             G   I   P  
Sbjct: 1127 AGATFIVRWPKR 1138


>gi|153954763|ref|YP_001395528.1| two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219855227|ref|YP_002472349.1| hypothetical protein CKR_1884 [Clostridium kluyveri NBRC 12016]
 gi|146347621|gb|EDK34157.1| Two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219568951|dbj|BAH06935.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 413

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 151/355 (42%), Gaps = 11/355 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
            LT     T+   ++ ++    + I  S     +  +          ++   +   +  +
Sbjct: 68  SLTFKITITYVFSFIMVFSLIGVCIMASFKYYIDKGINDDYMSILGGIIFISNVIGLFII 127

Query: 183 HVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
            ++    +    + L   T     +   +  K L+ +  K++L    +    + D    R
Sbjct: 128 AIVVSKASKKFLSPLKSMTDTVREISINALDKRLNVKGSKNELKDLAKTFNEMLD----R 183

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E     +++F++  SHELRTP++ I G++ ++     G  + E  +E I  I    +++
Sbjct: 184 IESSVEQQNQFVSDASHELRTPISVIQGYANLLYR--WGKNDREVLEESINAIKSESENM 241

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L L+R +    ++ +    L +++ E I   +L  ++ +IE          SV
Sbjct: 242 KELVEKLLFLARGDKNAQKVEKEDFILSELINELIRETKLVHKDHHIESDHN---EKFSV 298

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTV 420
           +AD K +++ +   + N++K+T  GG + +            I++ D G GI++  IP +
Sbjct: 299 YADRKLIKEALRIFMDNSIKYTKKGGTIKLDSHFIQHTNTAVITVADTGIGISKEHIPHI 358

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +   +  G GLGL IA+ I+  H G   + S+L  G  +    P  
Sbjct: 359 FERFYRADKSRTKSSGGTGLGLSIAKWILDMHQGTIDVWSELDIGTVIKITFPVK 413


>gi|194364514|ref|YP_002027124.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347318|gb|ACF50441.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1074

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 13/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           DL ++ E A+ +  + R+ A++ N AKS+FLA+MSHE+RTPL  +LG             
Sbjct: 447 DLSSQHE-AEQVLQQARRAADQANRAKSQFLATMSHEIRTPLYGVLGT----LELLGLTP 501

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +   + Y+  I RS   L+ LI++ILD+S+ EAG+  L  S    + +  + +      
Sbjct: 502 LDARQQHYLATIQRSSSTLMQLISDILDVSKAEAGQLSLEPSPFDPVRLTEDALDSYAAA 561

Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A  K ++ +  ID  + + V  D   +RQ++ NL+SNA+KFT  G  V         +  
Sbjct: 562 AANKGLQFYACIDADVPASVCGDAARIRQILNNLISNALKFTDSGRVVVRGSVRWQDQRC 621

Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           ++   + D G GIA      +   F Q       A +G GLGL I   +     G   + 
Sbjct: 622 WLQWQVTDTGIGIASEHQSHLFEPFFQA-NPGTDAMRGTGLGLAICAHLAELMDGHLRVV 680

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           S+   G      LP    L   P D  +S 
Sbjct: 681 SESGLGSSFSVELP----LPTAPPDPQQSP 706


>gi|220927705|ref|YP_002504614.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219998033|gb|ACL74634.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 488

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 13/313 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           +  PV   ++T  I  + V  I+L   L   L     ++  + K N           D I
Sbjct: 176 TITPVNATVNTLRIQLIWVTGITLLMALLMGLFISRKVSDPIIKINSSAKELAKGNYDTI 235

Query: 226 AELE------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
                        S  +   K   +    +   +A++SH+LRTPL  I G+ EV+     
Sbjct: 236 FHGRGYLEIAELNSTLNYAAKELSKVEGLRKELIANISHDLRTPLTMITGYGEVMRD--- 292

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             L  E   E +  I    + L  L+N+ILD+S++E+G  +L+    ++ + +R  +   
Sbjct: 293 --LPGENTPENVQIIIDEAKRLTTLVNDILDISQLESGTLKLNLDTFNITESIRNILQRY 350

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
               ++    +  K D  +  V AD   M QVI NL++NA+ +T     V + +  +S  
Sbjct: 351 NKLTEQDGYRLEFKSDKDI-WVNADTVKMSQVIYNLINNAITYTGPDRTVTI-IQSSSSD 408

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + I D G GI+E  +P +   + +   A K A  G GLGL I ++I+  HG ++ + 
Sbjct: 409 SVKVEITDTGEGISEEMLPLIWDRYYKIDKAHKRAAIGTGLGLSIVKTILDMHGARYGVG 468

Query: 460 SKLREGVEVIAIL 472
           SK  +G      L
Sbjct: 469 SKPGKGSTFWFEL 481


>gi|186683169|ref|YP_001866365.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465621|gb|ACC81422.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1118

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 18/273 (6%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 367 EQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NER 425

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y G IH+SG+HL++++N+ILDL+R+E G+ +L+ + + +  +    +   +    + 
Sbjct: 426 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMDLTLTPVKISAVCDRALSEAKAIHTQT 485

Query: 347 NI--------------EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                           +    I+  L  + ADE  +RQ++++LLSNA KFT I G + + 
Sbjct: 486 TKTTSQTQENDRSSAPQFCLSIELGLDEMVADELRLRQMLVHLLSNAFKFTEISGEIGLR 545

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V          +I D G GI E +   +   F Q    +    +G GLGL + +++   H
Sbjct: 546 VSRWE-GWIAFTIWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLH 604

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           GG     S+  +G +   +LP +       E +
Sbjct: 605 GGDVSFLSREGKGSQFTLLLPPSPPKTGFSEPD 637


>gi|300716381|ref|YP_003741184.1| Sensor protein [Erwinia billingiae Eb661]
 gi|299062217|emb|CAX59334.1| Sensor protein [Erwinia billingiae Eb661]
          Length = 1192

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 12/269 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E   +   + ++RAE+ N AKS FL++MSHE+RTP+NAI+G  ++   +       
Sbjct: 682 ITEREALFAELRDAKERAEDSNRAKSVFLSTMSHEIRTPMNAIIGMLDMALKKG---RQK 738

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E   + +   + S   L+ LI +ILD+SRIE G  E +   ++L  ++   + + Q  A 
Sbjct: 739 EIDLQALEVAYESADSLVGLIGDILDISRIEGGHLEFNPETVNLGKLIDNMLKVYQGLAI 798

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           +KNI + +      +  V AD   ++QV+ NLLSNA+KFT  GG  + ++     G    
Sbjct: 799 DKNITLSKHYPDEPIVDVLADPLRIKQVLANLLSNAIKFTDQGGVTLTLSQTRVPGSSSV 858

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I ++D+G GIA      +   F Q          G GLGL I+++I  N  G   + 
Sbjct: 859 QYCIEVQDSGIGIAAASQAALFQPFSQAENRRA----GTGLGLYISRTICENMQGSLTLS 914

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S+   G  V A+L   +V+        E 
Sbjct: 915 SEKGVGTRVRAMLALQQVVQEQQTPQAED 943


>gi|223932686|ref|ZP_03624685.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
 gi|223898656|gb|EEF65018.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
          Length = 449

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++E   +   + V   ++++ ++        +  F++++SHELRTPL ++  + E ++ 
Sbjct: 182 IRSESGLISGLVVVLHDMTEQAKEE-----RERRLFVSNVSHELRTPLTSVKSYLEALDE 236

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +      +   ++         ++ +I ++L LSRI+    ++    I+    V   +
Sbjct: 237 GALTESVAPS---FVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFIL 293

Query: 337 IMLQLRAQEKN---IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                     +     I +    S   V  D   M QV+ N+L+NA+K++  GG +  ++
Sbjct: 294 NRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSM 353

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T  +   +S+ D G GI + ++P +   F +   A   A+ G GLGL IA+ I+  H 
Sbjct: 354 KTTDSQ-LIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
           G    +S+   G     +LP ++ +
Sbjct: 413 GFIWAKSEYGHGSTFTIVLPYSKDI 437


>gi|317489065|ref|ZP_07947590.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316911797|gb|EFV33381.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 562

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 21/358 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +T++    +L+  ++  L      +A F       +  S     +   +   +AG     
Sbjct: 217 ITVFIGLVILVVTTVFVLRPLGGMHAAFGELKQGRLGASVSQRFAAKEVRSLIAG----- 271

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-------LAK 249
              F  +   L      + S   E+     +L  A +L +  R + E+ N         K
Sbjct: 272 ---FNDMAGELRGMYEHLESQVQER---TVDLREANALLERQRDKLEQLNADLAQETQFK 325

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S  L+ ++HELRTPL +I+ F++ I  E   P  NE  +    +I ++ + LLN+IN +L
Sbjct: 326 SDLLSMVNHELRTPLTSIITFAQ-ISREACDP-ANEHDRRSWEEIEKNSRILLNMINNML 383

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D++R +AG    +   + L D+       +   A++  +    K+   +  V  D +   
Sbjct: 384 DIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVNGDYEKTT 443

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +++ NL SNA+KFT  GG + + V + +      +S+ D+G GIA  +   +   F Q  
Sbjct: 444 RMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQARIFERFVQVD 503

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                   G GLGL + +      G    + S+L  G   +  +P + ++  I  ++ 
Sbjct: 504 STSTRKYNGSGLGLALVREYGDMQGFAVSVESELGRGSRFVITIPASAIVGEIEGEDD 561


>gi|42779796|ref|NP_977043.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42735713|gb|AAS39651.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 463

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E     +++    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKE---TTSSKQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L + +      +    +EK+I +     P+L  V  DE+ 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHNFLTRIAEKVNAIYKEKHIRVSFSCPPTLL-VNLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV++N+L+NA + +     +H++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVVVNILNNAYRHSKEYSLIHISVT-EEHKSISITIEDEGEGIPLEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G   I  LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|15599169|ref|NP_252663.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
 gi|9950164|gb|AAG07361.1|AE004815_5 Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
          Length = 795

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 169/432 (39%), Gaps = 23/432 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
           A I  ++  +P +   +   L   AA    G +   S +   +  VW    L+  +A+G 
Sbjct: 232 AGIEYFWPDSPWWANAATPFLIGSAALF--GCQFARSFLHTRDHSVWVDRGLLALMAVGA 289

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
              L+ L      T  Y    + AT L       +    +   +          ++  A 
Sbjct: 290 LVMLMAL------TMSYAVALRLATYLALAFTGLIFAAGILAWLRGMRVARYFIIAWTAF 343

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +   +++ +L  +      F T     +  +    L   A  D + A  E    +  E+ 
Sbjct: 344 LLGGIVN-TLMVLGYLPNMFLTMYASQIGSALEVGLLSLALADRINAMKEERARILQESS 402

Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           ++ E         N  K  FLA+++HELRTP++ ++G  E+++   M         EY  
Sbjct: 403 RKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDV----ELAEYQR 458

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
               S + ++ ++N+IL L  ++AG+        SL  +          R +EK +    
Sbjct: 459 TAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRVEEKGLRFAL 518

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISIKDNG 409
           ++D SL  ++  D   + Q +  L+ NA+KFTA G   + V  G T       + + D G
Sbjct: 519 QLDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTG 578

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G        +   F Q   ++     G+G+GL + + ++   GG+    S+  +G   +
Sbjct: 579 IGFDMAAGSDLYQRFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFL 638

Query: 470 AILPNTRVLNFI 481
             L  T+    +
Sbjct: 639 LRLQLTQPAQGL 650


>gi|325106065|ref|YP_004275719.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974913|gb|ADY53897.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 601

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 183/436 (41%), Gaps = 21/436 (4%)

Query: 46  FRVSPILPLFVLLVA-NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104
              + +  LF +LVA  I            + L+ L   +         +          
Sbjct: 23  INQARVRMLFYILVAYAIFGLTLIFAYSYNFQLLKLIRASTIFFFASLFIAFIYYANVWR 82

Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
                +L+    +G  W  L +   G        I+ ++ L   +       F     + 
Sbjct: 83  GVAHAVLILMTLLG-GWGNLLIFVHGINAATLQYIWMASALGFYMKGPKWGWFYSTINIL 141

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLFKSNVKI-LSCQAE 220
             F  V     T   + +    +       +L       T++ Y  FK+  K  L+    
Sbjct: 142 PVFIDVAFTDRTYFRLDVDPEVVVRPVYIYVLTFDFFIITFLHYFFFKTYSKNFLTLTQT 201

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           K+DL         +  + +K     + A+  FL++MSHELRTPLN ++G +EV+  +   
Sbjct: 202 KNDLNQTNRKLNEIIYDVKK----LSNARMDFLSTMSHELRTPLNGVIGLTEVLLKQ--- 254

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +  +E +  +  S ++LL L+N+ILD +++E+ + EL  +  +L +++R     + 
Sbjct: 255 -NPRKDQEETLSILRFSAENLLALVNDILDFNKLESSKVELENTLFNLDNLIRNIHASML 313

Query: 341 LRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           ++++ K +E+   ID  +    ++ D   + QV++NL+ NA+KFT   G V+++      
Sbjct: 314 IKSEVKGLELNLFIDEDIEKRSMYGDPTRLTQVLVNLIDNAIKFTEK-GFVNISCAIAER 372

Query: 399 RGQYISI----KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             Q I I    +D+G GI E     V  SF Q S +I     G GLGL I + ++A H  
Sbjct: 373 DNQRIRIDFVIEDSGIGIEENNQEKVFDSFIQASPSINRNYGGTGLGLSIVKRVLALHQS 432

Query: 455 QFLIRSKLREGVEVIA 470
              ++S   +G  +  
Sbjct: 433 GISLKSLPGKGTRISF 448


>gi|295093004|emb|CBK82095.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 491

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 147/339 (43%), Gaps = 20/339 (5%)

Query: 140 YKSATLLIALSISALSNFML---PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           Y  A  LI+L   AL N  +     A +L    +++ L      +              +
Sbjct: 167 YTDAVALISLETDALENLSIYMKRNATYLFVISLILGLIAAYFAAK------------LS 214

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           +    ++   +       L   +         E+ K ++D    +A+    ++  F++++
Sbjct: 215 VRDVNHVRNEIEGMKGGSLEPMSVDGMFRETQELTKDINDIFN-KAQLLEESRQEFVSNV 273

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHEL+TP+ ++   SE +  ++  P   E Y+E++ DI +       +I+++L L + + 
Sbjct: 274 SHELKTPITSMKVLSESLLTQSDVP--AEMYREFMEDIVQEIDREAEIISDLLTLVKTDK 331

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G   L++  + + + +   +  L+  A++++I++  +    +     D+      I NL+
Sbjct: 332 GPDSLNKEPVDMNEFMDLILKRLKPLAEKRSIQLSFESFGDI-KAEIDKVKFTLAISNLI 390

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            N +K+   GG + V++  +  R  YI + D+G GI E  I  +   F +   A      
Sbjct: 391 ENGIKYNVDGGWIKVSLN-SDHRNFYIKVADSGVGIPEDCINHIFERFYRVDKARSRDTG 449

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL I ++I+  H G   + S+  +G      +P  
Sbjct: 450 GTGLGLAITKNIIIMHKGTINVYSEPGKGTTFTVKVPLQ 488


>gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1010

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 8/240 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            ++  +  N AKS FLA++SHE+RTPLNA+LG  E++        +    K  +  +  +
Sbjct: 515 AQRALDSANRAKSTFLATISHEIRTPLNAMLGNLELL----DKAPDPSRQKPRLHAVTSA 570

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + LL+++N +LD+++IEA R  L  +   + +++R+   + +  A  + I +   +DP+
Sbjct: 571 ARMLLDMLNNVLDMTKIEADRMTLEATGFRIDELMRDVADLFEPVAGARGIALRIDVDPA 630

Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--QYISIKDNGPGIAE 414
           ++     D   +RQ+ +NL+SNA+KFT   G V ++V  + G      I + D+G G+  
Sbjct: 631 VTHTYLGDPMRVRQIAVNLVSNAIKFTDR-GAVALSVSASGGGATPVTIRVSDSGIGMTA 689

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  V   F Q   +I     G G+GL ++  +  + GG+    S    G   +  LP 
Sbjct: 690 DQLAHVFEPFAQADESIARRFGGTGIGLALSYKLAESMGGRIEADSVPGVGSTFVVTLPL 749


>gi|16127421|ref|NP_421985.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236230|ref|YP_002518667.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424865|gb|AAK25153.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965403|gb|ACL96759.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 642

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS+FLA+MSHE+RTP+N +LG   +++ E +    ++  +  + +    G+ L  L+N+I
Sbjct: 266 KSQFLANMSHEIRTPMNGVLGVLHLLKTEKL----SDDGRRLLTEALSCGEMLSALLNDI 321

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           +D S+IEAG+ ELS   +   +++R    ML+ +A+ K + +  +    L  V  D   +
Sbjct: 322 IDFSKIEAGKLELSAEPVCPAELLRGVADMLRAQAETKGLYLRVEASDDLGWVATDPLRL 381

Query: 369 RQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLT 422
           RQ + NL+ NAVKFT  GG V  ++                 I D G GI E     +  
Sbjct: 382 RQALFNLIGNAVKFTLEGGVVARLSGRRIDSPDGARLRLRFEIDDTGVGIGEEAGARLFE 441

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            F QG  +      G GLGL I + +    GG+    S+L +G     
Sbjct: 442 RFRQGDGSTTRRFGGSGLGLAICRRLAELMGGEVGFESQLGKGSTFWL 489


>gi|253680916|ref|ZP_04861719.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium botulinum D str. 1873]
 gi|253562765|gb|EES92211.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium botulinum D str. 1873]
          Length = 463

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              K+ F+AS+SHELRTPL +I G++  I L    P N + +++ +  I      L +L+
Sbjct: 239 EKLKTEFIASISHELRTPLTSIKGWT--IALSLCDPNNKKEFEDGLKIIEEETDRLSSLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            E+LD S++ +G+  L +  +++ +++      L  RA + NI +F +   ++ +++ D 
Sbjct: 297 EELLDFSKLSSGKITLKKDFVNIYELLIYLQKQLSPRASKDNINLFLEYKCTVPNIYVDV 356

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++QV +N+L N++KFT  GG + + +  T      I+IKDNG GI   ++P V   F 
Sbjct: 357 NRLKQVFMNILDNSLKFTPNGGEIKIALSCTDDN-VIINIKDNGCGIPPEDLPRVTEKFY 415

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +G  +        G+GL I   I++ H G   I S+  +G EVI  LP  
Sbjct: 416 KGKNSNSKN----GIGLSICSEIISLHNGTLEILSEQYKGTEVIITLPLE 461


>gi|228907708|ref|ZP_04071564.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
 gi|228851941|gb|EEM96739.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
          Length = 351

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 155/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTIIIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 297 FYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
 gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
          Length = 661

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 10/268 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FLA++SHELRTPL  ILG+SE++    
Sbjct: 246 TERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRV 305

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                     + +  I  S      LI+++LDLS +  G+ +L    + L  ++ E I  
Sbjct: 306 DNTSP---LYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLNLLLGEAIGA 362

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +L A+ K +++  ++    S V  D   ++QV+ NLLSNA+KFT   GR+ + +    G
Sbjct: 363 QELVAEGKALDVHLQLPEQPSLVLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQL-QADG 421

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I++ D G GIA   +  + + F Q          G+GLGL I Q ++  HGG    
Sbjct: 422 NHWVITVHDTGDGIAPEFLHHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTA 481

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDN 485
            S+    G      LP       IP+  
Sbjct: 482 ASEGHGHGATFTVRLP-----QHIPDAE 504


>gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
 gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
          Length = 858

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 153/426 (35%), Gaps = 13/426 (3%)

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121
           +           +   + L++ A  +    +V        E+   R+  +V      +  
Sbjct: 180 VSGLLGYMAGALVTLFLGLSLLALTMFRLFRVARRRADAIEIAGARLRTIVETSPDAIVV 239

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           T    +  G  T     +      +       L           +          +    
Sbjct: 240 TDEDGLVRGFNTAAERMLGYGRDDVFGKPARQLFAPTELPDERTATLFAFADERRRPTPE 299

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
               +ISL             I        + +   +      I+  +  +    E R R
Sbjct: 300 ERRFEISLRDRDGRLFPAEFSIDRAGTDDPLYVAYIRD-----ISRWKEVEEQLTEARDR 354

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A     +KS FLA MSHE+RTPLN +LG  +++  E +     E     I     SG+ L
Sbjct: 355 ALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEEL----TERQCAMIDRTEASGRLL 410

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSS 360
           L L+N++LDL++ EAG+     +  SL  +V   +  ++  A      +  +   P    
Sbjct: 411 LELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSWRWVGPEGDW 470

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIP 418
           V  D + +RQV+LNL+ NA+KFT   G V +   +         + + D+G GI E ++ 
Sbjct: 471 VDGDARRLRQVLLNLVGNALKFT-RDGTVEIEAEYLDDVGNALELRVIDSGIGIREEDLA 529

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F     +      G GLGL IAQ      GG     S+  EG      LP  +  
Sbjct: 530 RIFRDFETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLFWVRLPMPQTA 589

Query: 479 NFIPED 484
               ED
Sbjct: 590 RGATED 595


>gi|120611637|ref|YP_971315.1| histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120590101|gb|ABM33541.1| histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 298

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 10/272 (3%)

Query: 218 QAEKDDLIAELEVAKS-------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
           Q E + L AELE             D   ++  +    KSRFLA MSHE RTP+++I   
Sbjct: 24  QQEIELLRAELEETNRGVVALYSELDAQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSI 83

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           + ++     GPLN E  ++ +  I  +     ++++++LDL++IEAGR ++S +   ++D
Sbjct: 84  ARLLADHVDGPLNAEQSRQ-VAFIQATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVD 142

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + +    M +  A   ++ +  +   +L  ++ D++ + Q++ N +SNA+KFT   G V 
Sbjct: 143 LFQALRGMFKPVATNPDLNLVFEEPRNLPPLFTDDRKLSQILRNFISNALKFTPR-GEVR 201

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           V+     G     S+ D G GIA     +V   F Q    ++   +G GLGL + + +  
Sbjct: 202 VSAQACDGDRVRFSVADTGIGIAPEFHASVFEDFSQVGSPLQKRLRGTGLGLALCRQLAE 261

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             GG   ++S   EG      LP  R+    P
Sbjct: 262 LLGGAVELQSVPGEGSVFSVTLPV-RLPEPAP 292


>gi|256421717|ref|YP_003122370.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256036625|gb|ACU60169.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1013

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 18/308 (5%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P+  A+ ++ +  +       A +    LSF+  ++  +  +     +   E+     
Sbjct: 267 TIPIPSAIPSRPLGMLVAGVNPNAVLDENYLSFYALLSGQISVAVRNAFAYDEERKRTAY 326

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             E+               + AK+ F  ++SHE RTPL  ILG    I +      +  T
Sbjct: 327 LAEI---------------DRAKTAFFNNISHEFRTPLTLILGPLHDILIHQANSSSKHT 371

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             + +   + +   LL L+N +LD SRIEA R + S + + L     E     +   +++
Sbjct: 372 I-DQVSIAYSNAVRLLKLVNTLLDFSRIEAHRMQASYTPVDLSQFTTELASSFESAIKKE 430

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+            ++ D +   +++ N+LSNA+KFT  GG + V++  T+     I I 
Sbjct: 431 NLFFHIDCTQLSDVIYVDTQMWEKIVFNILSNALKFTFTGG-ISVSLQETAENAVLI-IS 488

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   E+P +   F + + +     +G G+GL + + ++  HGG     S+   G 
Sbjct: 489 DTGVGIPAEELPHIFDRFHRVTSSRSRTHEGTGIGLALTKELVTIHGGDITAVSQPDVGT 548

Query: 467 EVIAILPN 474
                +P 
Sbjct: 549 TFTIRIPK 556



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 143/382 (37%), Gaps = 38/382 (9%)

Query: 126  LVEPGTWTPEYLTIYKSATLLIALSISA--LSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
            ++           IY+ A  L+   +    ++ F L  A+        + +   +  +  
Sbjct: 630  VITASNGREALSLIYQEAPALVVSDVMMPDMNGFELLNAIKSDVEISNIPVILLSARAGK 689

Query: 184  VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
               I      A       +    L       L  +  +       E A+S     ++  E
Sbjct: 690  EATIEGLEKGANDYIIKPFYADELIARVSTQLQLRKAELANTHLRERAESQRLFQKE-LE 748

Query: 244  EE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                         N    +F  + SH+L+ PL  IL +S+++  E     + +    Y+ 
Sbjct: 749  RMVRDRTADLTKINAELEQFAFAASHDLQEPLRKILLYSQMLANEI--SSDQQKAGRYLE 806

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I  S   + NLIN++L+ SR+     E++ ++  L  I+   ++ L+L+      +I  
Sbjct: 807  KIMTSSARMRNLINDLLNFSRL--SIKEVAFTSTDLNTILENLLVDLELQINRSQAKITY 864

Query: 353  KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------------S 397
                 L  + A    M+Q+  NLLSNA+KF+       +TV  +               S
Sbjct: 865  T---DLPVIEAVPLQMQQLFFNLLSNALKFSDTRRTPAITVQASIATSADVALLSVPDPS 921

Query: 398  GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 I I DNG G  +     + T F +     ++A  G G+GL + + ++ NH G   
Sbjct: 922  AEYVKIVITDNGIGFDQKYADQIFTMFQKLHH--RTAYAGTGIGLALCKKVVINHHGIIH 979

Query: 458  IRSKLREGVEVIAILPNTRVLN 479
              S   EG +   ILP+ +   
Sbjct: 980  AMSVEGEGSKFTIILPSRQSTP 1001


>gi|261416093|ref|YP_003249776.1| integral membrane sensor signal transduction histidine kinase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372549|gb|ACX75294.1| integral membrane sensor signal transduction histidine kinase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302325981|gb|ADL25182.1| sensor histidine kinase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 454

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 147/320 (45%), Gaps = 18/320 (5%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
            +  +PY + L    VV+A+     +S   +                       +    +
Sbjct: 150 VSKTMPYLIALLTGIVVLAILIALGLSRAFVRPVQKLAENLGQPELIDDEDIYKEIAPLV 209

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            + + +  +L   +E    LS+E +K A      +  F A+ SHEL+TPL +I G++E+I
Sbjct: 210 KTIRKQHRELQLTIEQ---LSEEKKKTA----KMRDEFTANASHELKTPLTSISGYAELI 262

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA-GRYELSE-SAISLIDIV 332
           E     P   E  K + G IH+    LL++ N+I+ LS+++A G   +    +++L  + 
Sbjct: 263 ENGMAKP---EDVKRFAGKIHKEAGRLLSIANDIMTLSKLDAPGESAIGLDESVNLWTLA 319

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
             CI  L   A++K + +  +   + + V+ + + + +++ NL+ N++++T  GG V + 
Sbjct: 320 SNCIDELSFNAEKKGVRVALEGCKT-AEVYGNRRLLFEMLYNLVDNSIRYTETGGSVSIL 378

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V   S     I++KD G GI E   P +   F +   +   A  G GLGL I + I   H
Sbjct: 379 VQQKS-----IAVKDTGIGIPEENQPRIFERFYRVDKSRSKATGGTGLGLAIVKHIAEVH 433

Query: 453 GGQFLIRSKLREGVEVIAIL 472
             +  ++S +  G E+    
Sbjct: 434 HAEISLQSAIGVGTEITVAF 453


>gi|71899102|ref|ZP_00681266.1| PAS [Xylella fastidiosa Ann-1]
 gi|71731096|gb|EAO33163.1| PAS [Xylella fastidiosa Ann-1]
          Length = 510

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 232 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 291

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 292 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 348

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 349 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 407

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 408 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 467

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 468 TSPGLGKGAMFTVSL 482


>gi|291515688|emb|CBK64898.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 499

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 9/246 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  +      R++AEE ++ KS FLA+MSHE+RTPLNAI+GFS +++ E +   + E   
Sbjct: 236 EEREGQLVVAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQSEEL---SQEERA 292

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY   +  + + LL L+N+ILD+S +E G+   + ++  ++ I +  + M     +++ +
Sbjct: 293 EYCAIVVSNSEMLLTLLNDILDISSLECGKIRFNYASEDIVQICQHVM-MTTAHTRQRGV 351

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKD 407
           E           +  D   + Q+++NLL+NA KFT+  G + + V           S+ D
Sbjct: 352 EGRFACPVGSFMLTTDAHRLSQILINLLTNAGKFTSE-GSITLGVEIDEERGEVLFSVAD 410

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            GPGI   +   V   F +      + ++G GLGL I + I    GG+  + S    G  
Sbjct: 411 TGPGIPPDKQDLVFNRFEKLDG---NKKKGTGLGLAICRQIAMIVGGRIWVDSAYTGGTR 467

Query: 468 VIAILP 473
            +   P
Sbjct: 468 FVFAHP 473


>gi|330957589|gb|EGH57849.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 739

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 158/360 (43%), Gaps = 12/360 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           ++   +P   +    + +  A    +++   L    LP  V          +      S 
Sbjct: 386 MMASGDPVYASHHLSSAFPPAEAYQSVASGVL-AMSLPKPVDNGVIWFRPEVKESVRWSG 444

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--DETR- 239
                         L      ++ ++K  +  ++ Q    D+ A  ++ +S    D  R 
Sbjct: 445 DPNKPLNLESSEQGLRLRPRTSFEIWKVEMTGIATQWSHGDVYAANDLRRSALENDLARQ 504

Query: 240 -KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE--TMGPLNNETYKEYIGDIHR 296
            ++ ++   A+   +A +SH+LR P+  I     +++    + GP  +      I  + +
Sbjct: 505 VRKEQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTAIDTMQQ 564

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +   +  L+ ++LD S+IEAGRY ++   + +  I  E   +L   A +K+IEI    +P
Sbjct: 565 AASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFNAEP 624

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            +  V AD + + QV+ NL+ NA+KFT   G++ V    ++G     +++D+G GI   +
Sbjct: 625 DI-KVNADPERLFQVLSNLIGNAIKFTPKLGKIGV-AAMSNGSEIVFTVRDSGEGIPPEQ 682

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +P +   +        +   G GLGL I+Q I+  HGG+    S++ +G E    +P  +
Sbjct: 683 LPHIFERYWTVKEGNPT---GTGLGLYISQGIIKAHGGELAAHSQVGQGSEFRFTVPLAQ 739


>gi|288961571|ref|YP_003451881.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288913851|dbj|BAI75337.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 552

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 139/236 (58%), Gaps = 3/236 (1%)

Query: 240 KRAEEENLAK---SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + AE    A      FLA +SHE RTPLNAI+GFSE+I+ +  GP     Y +Y  DIH 
Sbjct: 315 RNAERLAAALAVNRDFLARVSHEFRTPLNAIIGFSEIIKDQMFGPDAGPRYADYARDIHT 374

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SGQHLL LI++ILDLSR++AG++ L    +  +      I ++  +A++K+I +  K  P
Sbjct: 375 SGQHLLTLIDDILDLSRLQAGKFALLMEDVDPVAAAEWAIRIVTPQAEQKSIHLEIKRPP 434

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           S + V ADE+ ++Q++LNLLSNA+KFT   GRV V+VG  +     + I D G G+   E
Sbjct: 435 SPTLVRADERALKQMLLNLLSNALKFTPENGRVLVSVGRGTHGRCIVRITDTGIGMTAEE 494

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      FGQ +  +    +G GLGLPI +S++  HGG   I S+  +G ++    
Sbjct: 495 LRQASVPFGQTAALVAHPGRGTGLGLPIVKSLIEAHGGSLRIDSRPGQGSQITLEF 550


>gi|268591889|ref|ZP_06126110.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
 gi|291312863|gb|EFE53316.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
          Length = 1205

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 11/256 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E E         R+RAE  +  KS FLA MSHE+RT ++AI+G  E+           
Sbjct: 685 ITEHEQLLIELSSARQRAEHASQTKSNFLAIMSHEIRTHISAIIGLLELAATN---KNQQ 741

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +   E I   + S   L+ LI +ILD+++IE+G+ EL    +   ++    + + +  A+
Sbjct: 742 DDITESIQIPYESALSLMGLIGDILDMAKIESGKLELVPEWVKSNELATPVVRLFEGLAK 801

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399
           +K I +   ++      ++ D   +RQVI NLL+NA+KFT+  G + V + +        
Sbjct: 802 QKGISLHYHLNAIHPDEIYIDVFRLRQVISNLLNNAIKFTSE-GTIEVIINYLPQNHEEN 860

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI E     + + + Q   +  S  +G GLGL I + +++   G   + 
Sbjct: 861 ILRIIISDTGMGIEENRQELIFSPYTQAESS--SKHKGTGLGLAICKQLISMMNGTITLY 918

Query: 460 SKLREGVEVIAILPNT 475
           S+L  G + +  +P  
Sbjct: 919 SQLGHGTQFLIDIPVK 934


>gi|222836961|gb|EEE75354.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 112/279 (40%), Gaps = 24/279 (8%)

Query: 231 AKSLSDETRKR--AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           A++   E R+     E + AK+ F +++SHELRTPL  ILG  E    E  G +     +
Sbjct: 333 AQAYEQEARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHGGQVPAGQTQ 392

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
                IHR+   L  L+N +LD SRIEAGR + S     L     E   M +   ++  +
Sbjct: 393 ----MIHRNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGL 448

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------- 398
            +     P    V  D     +++LNLLSNA KFT   G + V +               
Sbjct: 449 RLRVDCPPLDGPVHVDRDMYEKIVLNLLSNAFKFTLQ-GEIAVALRDVPDVHDAHGAGGA 507

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                +S+ D G GIA   +P +   F +         +G G+GL + Q +   HGG   
Sbjct: 508 NGAVELSVTDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVT 567

Query: 458 IRSKLREGVEVIAILPNTRVL------NFIPEDNHESTQ 490
           + S   EG      LP              P   H    
Sbjct: 568 VSSTEGEGSRFTVRLPRGHAHLPAEHRPARPPAAHPQVD 606


>gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 860

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 127/259 (49%), Gaps = 1/259 (0%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +T  L               + I++   A+         AE  N AKS FLA++SHE RT
Sbjct: 422 LTGALLTKEDGSPDYFISVIEDISDRRRAQESLRLALVDAERANQAKSEFLATISHEFRT 481

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLNAI GFSE++     G L +  Y+EY  +I  S QHLL L+N  LDLS  EAG   L+
Sbjct: 482 PLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAEAGNPALT 541

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              + + +IV +C+  L +  +   I     + P    + AD   +RQ++LNLLSNAVK 
Sbjct: 542 IEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNLLSNAVKA 601

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GG + V V   S +   + + D G G+ E  +  +   F         +  G GLGL
Sbjct: 602 TPPGGSISVRVEANSDKHVLV-VSDTGMGVPEHLVDRMTDPFTVIGGNAYHSRDGKGLGL 660

Query: 443 PIAQSIMANHGGQFLIRSK 461
            I +S++  H G   I S+
Sbjct: 661 AIVKSLVQRHRGDLRIESR 679


>gi|260578370|ref|ZP_05846284.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
 gi|258603392|gb|EEW16655.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
          Length = 486

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 140/327 (42%), Gaps = 9/327 (2%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNV 212
           +S  +L  AV        V L++  ++   +  ++   + A+ +S           + N 
Sbjct: 168 ISRLVLLQAVIGLTVVAFVILASMYLVRRALRPLNEVELTASKISNGDLGQRVPNWRPNT 227

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++       + ++A+++ A      + ++A     +  RF+   SHELRTPL ++ G++E
Sbjct: 228 EVGRLSQALNKMLAQIQTAFVAIGASERQARRSEASMRRFIGDASHELRTPLTSVRGYAE 287

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           + +               I  I      +  L+ ++L L R++ GR  L+++ + ++++V
Sbjct: 288 LYQSGATDDAPM-----VIDRISEEAGRMSLLVEDLLALVRMDEGR-PLAKNRVDMLELV 341

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            E     +     + +++       +  V  D   + QV+ NL++NA++       V + 
Sbjct: 342 LETAESARAGFPNRTVQV-VNETGDVPIVIGDVNRLHQVLGNLVTNALRHAGEDAEVKLR 400

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +         + ++DNG GI   ++P +   F +  ++   A  G GLGL I + ++  H
Sbjct: 401 LDKR-DGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSIVKGLVEAH 459

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLN 479
           GG   + S+  +G      LP      
Sbjct: 460 GGTVSVDSEEGQGTRFRIDLPEAPEAE 486


>gi|167769268|ref|ZP_02441321.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
 gi|167668908|gb|EDS13038.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
          Length = 1072

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 135/263 (51%), Gaps = 11/263 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E      L D  R+   E N  KS FLA+MSHE+RTP+NA++G SE++  + +     
Sbjct: 340 MTENMRRIQLLDRMRRAEVESNRLKSTFLANMSHEIRTPINAVIGMSEILMRKKL----P 395

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +G IH +GQ LL +I+EILD S+IE+G++EL E+   L  +V   + ++ +R  
Sbjct: 396 DDLRADVGVIHSAGQGLLAIISEILDFSKIESGKFELIETEYMLPALVETVVHIIGVRFS 455

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +   I+P     ++ D + ++Q++LNLLSNA KFT   G V +   W        
Sbjct: 456 KKPVCLLIDIEPDTPIGLFGDNQRVQQILLNLLSNAEKFT-QSGYVRLYWRWEHAGEDMV 514

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              IS++D G GI    +  +   + Q       A  G GLGL I + +    GG   + 
Sbjct: 515 RMIISVEDTGSGIRPENLEKIFAQYQQVDAKSNRALVGTGLGLAIGREMARMMGGDITVE 574

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           S+  +G          ++L+  P
Sbjct: 575 SEYGKGSVFTVTF-LQKILDNRP 596


>gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 773

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 145/332 (43%), Gaps = 8/332 (2%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            +L A+ +  +++  L    F++   + +  + + + +  + +  +       +      
Sbjct: 4   AMLTAIVLVVIASHYLSN--FITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVS 61

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              + +S  + +S    ++    ELE    +  +     +  N  K  FLA+ SHELRTP
Sbjct: 62  FERMQRSIREKISLIKSQNK---ELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTP 118

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L+ ++G +E +     GP++   +K  +  I  SGQ L  L++++LD  ++  G  ++  
Sbjct: 119 LHGMIGIAEALISGANGPIS-AAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQR 177

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            A+ L    R  + +      +K + I  ++      V AD + + QV+ NL+ NA+K+T
Sbjct: 178 CAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYT 237

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
           +  G++ ++  +       + + D G GI   ++  +     Q         QG GLGL 
Sbjct: 238 SE-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLS 295

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           I++ ++    G   + S+   G      LP  
Sbjct: 296 ISRQLIELMQGTLYVSSQPMVGTTFSFTLPLA 327


>gi|156741486|ref|YP_001431615.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156232814|gb|ABU57597.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 483

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 17/343 (4%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            ++   ++  L   +       +     +A   + ++   +L      +L   ++     
Sbjct: 130 VIVDGTTVGYLMARLQRDTALSTAAQRFLAELNETLVQAGLLATVFGLILGIVIARSLTT 189

Query: 204 T-YHLFKSNVKILSCQAEKDDLIA---ELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              HL ++  ++ S    +   +A   E+  A    +      EE   A+ R LA ++HE
Sbjct: 190 PIDHLARAARRLASGDLTRRAPVAGPVEVASAAEAFNAMAASLEEAEQARRRLLADIAHE 249

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL+ I G    +  +      +E     I  I+     L  L+ ++ +L+  EAG+ 
Sbjct: 250 LRTPLSVIQGNLRALLDDVFPLEKDE-----IATIYDETLLLSRLVADLRELTLAEAGQL 304

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L  + + +  +V + + +   +A EK + +  + +P L  V AD   + Q + NLLSNA
Sbjct: 305 RLDLAPVDVAGVVAQSMALFTAQALEKQVTLHTECEPDLPPVLADADRIAQALNNLLSNA 364

Query: 380 VKFTAIGGRVHVTVGWT--------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           +++T  GG V +                   I + D GPGI   ++P V   F +     
Sbjct: 365 LRYTPEGGTVRIIASRARQSVCTVPETDMICIRVIDTGPGIPAADLPRVFDRFWRADRGR 424

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             A  G GLGL IA+ ++  HGG   + S+  +G      LP 
Sbjct: 425 ARAHGGTGLGLAIARQLVLAHGGAMGVESEPGKGACFWFTLPV 467


>gi|254994023|ref|ZP_05276213.1| sensor histidine kinase [Listeria monocytogenes FSL J2-064]
          Length = 459

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNNTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHL-YEKATYVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 KVKLPK 458


>gi|297528743|ref|YP_003670018.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297251995|gb|ADI25441.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 29/328 (8%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            +            V    F  ++ +         V    L  ++  A+ F         
Sbjct: 157 AARDWRVLAAARPLVIHGDFVGMLYIGMDVTSFFGVFHWLLIVLIGLAVLFLAVGV---- 212

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
                 LS    K  L                  EE    + +F+A  SHELRTPL+ + 
Sbjct: 213 -----ALSFFMSKRALAPI---------------EEAYERQRQFVADASHELRTPLSVVF 252

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR--YELSESAI 326
              E + LE    + N+  +  +  +    + +  L+N++L L+R +A     ELS+   
Sbjct: 253 SSVEALSLEE-DVMKNDFARRLLDRLRDELKRITKLMNDLLTLARADAKHAALELSKQTF 311

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
                      ++   A +K I +     P  + V AD   + Q++  LL NA+K+T  G
Sbjct: 312 DFRPHAERTFQLMSELAAKKQITMHFH-APEQALVTADPDKLTQLLYILLDNAIKYTPEG 370

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +++  T  +  ++S+KD G GI   +I  +   F +   A    + G GLGL IA+
Sbjct: 371 GEVTLSI-RTEPKHVFLSVKDTGIGIPPEDIGRIFDRFYRVDKARSRQQGGHGLGLSIAK 429

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            I+  HGG+  ++S+L +G E +  LP 
Sbjct: 430 WIVEAHGGKIHVQSQLGQGSEFLVRLPV 457


>gi|110834168|ref|YP_693027.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
           SK2]
 gi|110647279|emb|CAL16755.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
           SK2]
          Length = 1222

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 135/311 (43%), Gaps = 37/311 (11%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---------------------KRA 242
           T  L  S   + + Q E      ELE    +  E +                     +  
Sbjct: 487 TQALRASEESLQNQQEELRVTNEELEAQARMLTEQKSEMAQKNDELELLRHELEDKIREL 546

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  KS FL++MSHELRTPLN+IL  S  +     G L  E   E+   IH +G  LL
Sbjct: 547 EMSSRYKSEFLSTMSHELRTPLNSILILSNALAQNKKGNL-EEKQVEHAQVIHSAGTDLL 605

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           +LIN+ILD+S+IE G+ ++    +S  +IV          A+ +N++   ++  +L    
Sbjct: 606 SLINDILDISKIEEGKMDVIIDDLSPTEIVEHFRRNFAHVAESRNLDFKVELGDTLPDHF 665

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNG 409
           + D + + Q+I NLLSNA+KFT   G V +++                G+    ++ D G
Sbjct: 666 YTDRQRLEQIIKNLLSNALKFT-EHGSVMLSLTQPDVSETLPSRHLVPGQTLKFAVTDTG 724

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            GIA  +   +  +F Q          G GLGL I++ +    GG+  + S    +G   
Sbjct: 725 TGIAREKQKLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLYSDGEGQGSTF 784

Query: 469 IAILPNTRVLN 479
              LP  R   
Sbjct: 785 ALYLPVGRADE 795


>gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1229

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 5/265 (1%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +  +       E+     E E   +     R+ AE  N  K  FLA +SHELR+PLN IL
Sbjct: 817  RGVIGAFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNPIL 876

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G+++++      P   +     +  I R+    + L++++LD++RI  G+  L+   + L
Sbjct: 877  GWTKLLRTRQFDPAATDK---ALATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVDL 933

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
               ++  I  +QL A+ K+I+I       +  V  D   ++QV+ NLLSNAVKFT  GG+
Sbjct: 934  AIAIKAAIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGGQ 993

Query: 389  VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            V VT+  T      I++KD G GI+   +P +   F Q   ++     G+GLGL IA+ +
Sbjct: 994  VEVTLA-TVDEFAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHL 1052

Query: 449  MANHGGQFLIRSK-LREGVEVIAIL 472
            +  HGG     S    +G      L
Sbjct: 1053 VDLHGGIIQADSPGEGQGATFTVRL 1077


>gi|254491421|ref|ZP_05104600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224462899|gb|EEF79169.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 779

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 162/408 (39%), Gaps = 60/408 (14%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
           +     S    +  + +    V   R  L      I L   +           E + ++ 
Sbjct: 1   MTLLYYSFALIIAAAILIKPTVSPIRRVLANALDLISLSVVMFFA------GSESVFLFV 54

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS---MHVLDISLAGMLATALS 198
               +I  S        L  ++ +      ++++            + +SL  ++     
Sbjct: 55  LYLWVILGSGFRYGAPYLYISLAVGIVGFTISITWGEYWQDIQHKPIGLSLLILMVMIPV 114

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  ++   L +                                A+  N AKSRFLASMSH
Sbjct: 115 YSAFLIKKLHR----------------------------ALDTAKFANEAKSRFLASMSH 146

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN ++G +++++   +    N   +E++  +H S   LL LI  +LD+S+IEAG+
Sbjct: 147 ELRTPLNGVIGVADLMQETKL----NPEQREFVRIMHNSANTLLGLIENVLDISKIEAGK 202

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            E   S   L +++   I M +  A  K+I +F  +DP +  +V  D + ++QV++NL+ 
Sbjct: 203 IESIRSEFDLHELITTVIKMQRPMATAKDIALFCNMDPQIQFAVHGDPQHLKQVLINLIG 262

Query: 378 NAVKFTAIGGRVHVT----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA--- 430
           NAVKFT   G + ++    V  T  +     I+D G GI    + T+   F Q + A   
Sbjct: 263 NAVKFT-TSGYIRLSLQAQVSNTDEQVVRFEIRDTGIGIPAESLDTIFDDFTQVNAASGT 321

Query: 431 ---IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                           I++ ++   GG   + S+L  G      LP  
Sbjct: 322 TSGTGLGTT-------ISKELVELMGGNIGVTSQLGVGTTFWFELPLK 362


>gi|73538799|ref|YP_299166.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72122136|gb|AAZ64322.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ralstonia eutropha JMP134]
          Length = 299

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 2/282 (0%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +   L     ++ + + E D+    +    +  D   ++  +    KSRFLA MSHE
Sbjct: 11  IASLQAALDARTREVETLRTEIDETNRGVVALYAELDIQAEQLRQATELKSRFLAYMSHE 70

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            RTP+ AI   + ++     GPL  E  K+ +  +  +      ++N++LDL+R+EAGR 
Sbjct: 71  FRTPIVAIQSITRLLIDRVDGPLTPEQEKQ-VRFVRDTAAEFAGMVNDLLDLARLEAGRV 129

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++S +   ++ +      M +       + +  +    +S +++D++ + Q++ N +SNA
Sbjct: 130 DVSPAWFDMVALFDALRGMFKPVLTNPEVSLIFEEPHDVSKLFSDDRKVSQILRNFISNA 189

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +KFT   G V V+     G     S++D G GI       V   F Q    ++   +G G
Sbjct: 190 LKFTPS-GEVRVSAKREPGDMIMFSVRDTGIGIPAEAHGAVFGDFVQVDSPLQRRYRGSG 248

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           LGL +++ +    GG     S++  G      LP T      
Sbjct: 249 LGLALSKRLAELLGGSIGFESQVGVGSRFYVTLPATFPSQSQ 290


>gi|28211579|ref|NP_782523.1| alkaline phosphatase synthesis sensor protein phoR [Clostridium
           tetani E88]
 gi|28204020|gb|AAO36460.1| alkaline phosphatase synthesis sensor protein phoR [Clostridium
           tetani E88]
          Length = 471

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
             +    +  ++    I  + +  + LA  +   +   T +   +   N++I + +   D
Sbjct: 160 AIVKMSVLFFSIGLIVIFVVGIFSVFLADTVIGPIKKLTKVAEEMADGNLEIRNEKEFDD 219

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++    +    +++E  K+    +  K+ F++S+SHE+RTPL +I G++  +  E +   
Sbjct: 220 EIGRLSDTLNYMAEEILKK----DKLKNEFISSISHEIRTPLTSIKGWAITLNTEDL--E 273

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +    ++ +  I    + L  ++ E+LD S++ +G+  + +  + L +++      L  R
Sbjct: 274 DKNLIRDGLNIIEEESERLSKMVEELLDFSKLISGKVTIKKEKVDLNEVISYIEKYLSPR 333

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
           A+ +N++   + +  L  ++ D   M+QV +N+L NA KF+   G   V +         
Sbjct: 334 AKRENVQFIVEKNYDLPIMYIDVDRMKQVFINILDNAFKFSKEEGEKRVLLSIKIENEEV 393

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I I+DNG GI++ ++P +   F +G  +        G+GL I   I+A HGG     S+
Sbjct: 394 IILIEDNGYGISKSDLPKIKEKFYKGKNSKSQN----GIGLSICDEIVAMHGGTLEFDSE 449

Query: 462 LREGVEVIAILP 473
           +  G +V   LP
Sbjct: 450 INRGTKVYIKLP 461


>gi|77458389|ref|YP_347894.1| multi-sensor Signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
 gi|17980436|gb|AAL50631.1|AF418994_1 bacteriophytochrome [Pseudomonas fluorescens]
 gi|77382392|gb|ABA73905.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 745

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 11/330 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S               L      ++ ++K 
Sbjct: 419 ASGVLAMSLPKPVDNGVLWFRPEVKENINWSGDPRKPLDLENSDAGLRLRPRTSFEIWKV 478

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETR--KRAEEENLAKSRFLASMSHELRTPLNA 266
            +  +S +    DL A  ++ +S    D  R  +R +E   A+   +A +SH+LR P+  
Sbjct: 479 EMAGISTKWSHGDLFAANDLRRSALENDLARQVRREQEAVRARDELVAVVSHDLRNPMTV 538

Query: 267 ILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      I  + ++   +  L+ ++LD S+I+AGRY ++  
Sbjct: 539 ISMLCGMMQKAFSSDGPHTSRRISTAIDTMQQAAGRMNTLLEDLLDTSKIDAGRYTIAPQ 598

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + +  +  E   +L   A +K+I I  + DP L S+ AD + + QV+ NL+ NA+KFT 
Sbjct: 599 KLDVAQMFEEAQSLLAPLALDKDISISFEADPDL-SIHADPERLFQVLSNLVGNAIKFTP 657

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G V V            +++D+G GI +  +P V   +        +   G GLGL I
Sbjct: 658 RLGTVDVYAKSVGDD-IVFTVRDSGEGIPKDHLPHVFDRYWTVKEGNPT---GTGLGLYI 713

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q I+  HGGQ +  S+  +G E    +P 
Sbjct: 714 TQGIVEAHGGQIVAESEPGQGSEFRFTVPR 743


>gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 1154

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 134/325 (41%), Gaps = 9/325 (2%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
             ++A    ++  A        ++    Q  ++  +L       +              +
Sbjct: 247 GGLAARLAAVVEGAAPAWLPGSLLGWRGQKALAHPLLRSDEVAGVLVMGVNPKLPVNASY 306

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +    +L+         A  +  + L  E      E + AK+ F +++SHE RTPL  +L
Sbjct: 307 QDFYDVLARGVSAALAAAHTQQEQRLRAEA---LAELDRAKTTFFSNVSHEFRTPLTLLL 363

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  +    + +   +    +  +    RS   LL L+N +LD+SR EAGR       + L
Sbjct: 364 GPVQ----QALSVEDRPERRRQLELAERSALRLLKLVNTLLDVSRAEAGRLRGHFEPVDL 419

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             +  E   + +       + +  +  P    V  D +   +++LNLLSNA+KFT  GG 
Sbjct: 420 SRVTAELAAVFRSAFDLAGLSLRVECPPLPGPVHVDREMWEKIVLNLLSNALKFTFAGG- 478

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V V +   +G    +++ D G G+   E+P +   F Q   A   + +G G+GL + + +
Sbjct: 479 VTVRLAA-AGDRARLTVADTGTGVPPEELPYLFDRFHQVRGARSRSHEGSGIGLALVKDL 537

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +  H G   + S+  EG      +P
Sbjct: 538 VELHAGTVSVSSRPGEGSTFTVEVP 562


>gi|300021836|ref|YP_003754447.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523657|gb|ADJ22126.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 428

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 157/420 (37%), Gaps = 33/420 (7%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123
             +          ++   +   + +L     NS  K  ++          +        +
Sbjct: 35  WLYAGEQWRLSLGVLCGLLAGISAALA---WNSRPKPEKMAEAIANSGATEKPFSWPDLV 91

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183
             + +P         +       +A+         L +          V  + +      
Sbjct: 92  AAIPDPTIVLNRSSVVLNYNAAALAIFERLTQGRPLEHVSRDPELIAAVTGAFETAQKRK 151

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            + +   G     ++          +  V  L        +  E E  ++L         
Sbjct: 152 AMLLPRGGGGQRFIATVAPFGGEAGQPAVAAL------ITIHDESEQHRAL--------- 196

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK--EYIGDIHRSGQHL 301
                ++ F+A+ SHELRTPL ++ GF E ++    GP  N+      ++  +    + +
Sbjct: 197 ---EMRTDFVANASHELRTPLASVRGFIETLQ----GPARNDEVAHDRFLKIMAEQAERM 249

Query: 302 LNLINEILDLSRIEAGRYELSES-AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
             LI+++L LSR+E  +  L+ +  + L +++ E +  L   ++E+ I I  + + S   
Sbjct: 250 TRLIDDLLLLSRVE-EKANLNPTGQVRLSELLNEVVRALTPVSEERQITITVEPESSPLV 308

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416
              +   + QV  NL+ NAVK+  +GG V V +  +          +++ D+GPGIA   
Sbjct: 309 AKGERDELFQVFHNLIENAVKYGRVGGSVKVHLRESERDPSKKRVAVTVTDDGPGIAPEH 368

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +P +   F + S        G GLGL IA+ I+  H G+  + S +  G      LP  +
Sbjct: 369 LPRLTERFYRVSTEHSRRIGGTGLGLAIAKHILTRHQGELSVDSVVGRGTTFKVSLPKYK 428


>gi|257063842|ref|YP_003143514.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791495|gb|ACV22165.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
          Length = 556

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 14/371 (3%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA-- 173
            +G+    + +          +      +  +  +       +    V      V  A  
Sbjct: 184 LVGIASISIPVDSHKEDLKAQIIHRVLLSTGVLAACFLTITLVTRRYVIHPLRKVEGAVQ 243

Query: 174 -LSTQAIMSMHVLDISLAG----MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            L +  + +   ++   A     +L+   +        L K   ++++ + E+     E 
Sbjct: 244 KLGSGDMSTHIDVEAINACGEINVLSGQFNNMASELDALHKHLEEMVATRTEQLADANET 303

Query: 229 --EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             E A +  +E  +R  E +L KS F   MSHELRTP   I  + +++E E  G L++E 
Sbjct: 304 LAEQA-AKLEEMNRRLTENDLYKSHFFTMMSHELRTPTTVIRAYIDMLEEE--GDLDDEA 360

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  I  + Q L  L++ IL+ +R+EAG  +L ++ +   DI+ E    L   AQ+K
Sbjct: 361 RRNAVKAIRTNAQSLSKLVDSILESARMEAGAVKLEKTVVDAADIMVEVEKTLTPLAQDK 420

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405
           +I++      +     AD   +  ++ NL SNA+K+T  GG V V+             +
Sbjct: 421 SIDLQVSY-GNTPLFMADANKLLHILENLGSNAIKYTGFGGEVSVSASLDEEAGEMRFVV 479

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            DNG GI+E +   V   F Q   ++     G GLGL +A+     HGG  L+ S L +G
Sbjct: 480 SDNGIGISEADKQVVFEKFKQAGSSVSKPVSGSGLGLALAKEYAELHGGSILLESALGQG 539

Query: 466 VEVIAILPNTR 476
            E    +P   
Sbjct: 540 SEFTVCIPFEE 550


>gi|163801557|ref|ZP_02195455.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio sp. AND4]
 gi|159174474|gb|EDP59276.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio sp. AND4]
          Length = 1235

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      ++RA+    A+  FLA+MSHELRTPL+A  G  +++  +     ++
Sbjct: 663 ITEQQERELALIVAQERAQTAVRARESFLATMSHELRTPLSAAHGLLDLLTRQA----DS 718

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              KE I    RS  HL  L++E+LD S++EAG+ +++     ++  + + +   + +A 
Sbjct: 719 GNSKELITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPIQTDVLTTLCDVVRSFEPKAV 778

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++      P +   +  D   + Q+  NLLSNAVKFT+  G ++V+V   S R   +
Sbjct: 779 SKGLDYRVLFKPFNTPWLKVDPVRLVQIATNLLSNAVKFTSD-GEINVSVAL-SERKLIL 836

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+++ ++  +L  F Q    I     G GLGL I   ++   GG+  I S+L 
Sbjct: 837 KVADTGIGMSDTQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVKCMGGELYIDSQLG 896

Query: 464 EGVEVIAILP 473
            G  ++  LP
Sbjct: 897 LGTTMLVKLP 906


>gi|85708111|ref|ZP_01039177.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
 gi|85689645|gb|EAQ29648.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
          Length = 649

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 3/291 (1%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            F+  +     ++    L   A+    + E   ++      R+ A   +LAKS FL+  S
Sbjct: 362 VFWANVVITALRNEAGELQGFAKVTRDMTERRRSEDALRLAREDAVAASLAKSEFLSRTS 421

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAILGF +++  E      ++ ++E +  I R+G+HLL+LIN++LD+S IEAG
Sbjct: 422 HELRTPLNAILGFGQLL--EIDLEDFSQPHQEAVERITRAGRHLLSLINDLLDISSIEAG 479

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
             EL    + +  ++ E   + +       +     +  + + V AD + M QVILNL+ 
Sbjct: 480 GAELEYEEVDVAAMLEEVHDLAEPIVSSAGLSFEMALPEAGAKVVADRRRMTQVILNLVG 539

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA K+   G  V +             ++D+GPGI       + T+F +     +   +G
Sbjct: 540 NAAKYNVEGSFVRLGASLDGDGAATFFVEDDGPGIDPANASRLFTAFDRLGQHKRDKTEG 599

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            GLGL +++ ++ + GGQ    S  + G      L +    N  P+ + ES
Sbjct: 600 TGLGLALSKGLVESMGGQIG-YSPRKPGSRFWFTLSSQPTENSRPKADQES 649


>gi|167748521|ref|ZP_02420648.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662]
 gi|167652513|gb|EDR96642.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662]
          Length = 967

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 8/269 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + +   ++   + +  +++ + +  K         AE+ N AKS FL+ MSHE+RTP+NA
Sbjct: 408 IDRDLGRVCLARVDVTEIVRQEQRQKQELAAALAGAEQANAAKSDFLSRMSHEIRTPMNA 467

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I+G   +           E   + I  I  S ++LL+LIN+ILD+SRIE+G+  L    I
Sbjct: 468 IIGMCTIAAQSIGNETKVE---DCISKIGISSRYLLSLINDILDMSRIESGKMLLKNEKI 524

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385
            + + +     +   +A  K ++    +DP +   +  D   ++QV++N++ NAVKFT  
Sbjct: 525 PMEEFINGINSICYAQADAKGVDYDCVVDPMIDDYYIGDAMKLQQVLINIIGNAVKFTEE 584

Query: 386 GGRVH---VTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           GG++    + +  T         I D G G+ E  +P +  +F Q S  I S   G GLG
Sbjct: 585 GGKITFSTLRLKKTKNDVTLRFIINDTGVGMDEEFLPHIFETFSQESTGITSVYGGTGLG 644

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           L I++SI+    G+  +RS    G E   
Sbjct: 645 LAISKSIVDMMDGRINVRSIKGVGSEFTV 673


>gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1]
 gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1]
          Length = 558

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 280 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 339

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 340 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 396

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 397 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 455

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 456 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 515

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 516 TSPGLGKGAMFTVSL 530


>gi|188585847|ref|YP_001917392.1| integral membrane sensor signal transduction histidine kinase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350534|gb|ACB84804.1| integral membrane sensor signal transduction histidine kinase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 525

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 142/324 (43%), Gaps = 12/324 (3%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +S   L             ALS    ++  +  I+ +        F   I   + +    
Sbjct: 205 ISRLTLISGGIAILVASAFALSLSKNITRPLSSINESAQALAKGEFTQKIGREVLEETDD 264

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L   +    L A+ E+  ++ ++ R     +NL     + + SHE R PL+AI G+SE+
Sbjct: 265 ELGKVSRTFHLAAQ-EIENNIEEQKRLAVFRKNL-----VDNASHEFRAPLSAIRGYSEL 318

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I     G +  +    Y+  I +    L  +++ +LDLS +E G   L++  ++  +++ 
Sbjct: 319 IID---GIVPEQDQTHYLNLIWKHAVELNEMVDTLLDLSSLETGTINLNKEKMTAKEVLI 375

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           + + M+   A++KN  I      S +    D   ++Q+I+NLL NA+++T+  G + +  
Sbjct: 376 DAMDMVLPDAEKKNQTITIDKSESKTFFKGDPPRVKQIIVNLLKNAIQYTSEKGTIRLRA 435

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI--KSAEQGVGLGLPIAQSIMAN 451
            + + +   + + DNG GI + E+ ++   F +   A          GLGL I   ++  
Sbjct: 436 -FDTEQYVALQVVDNGIGIPKSELDSIFQRFYKVDKARNQNKKSGSSGLGLAIVNELVKI 494

Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475
           H G+  + S+  +G       P +
Sbjct: 495 HNGKIEVDSEEGKGSTFTVYFPRS 518


>gi|229056423|ref|ZP_04195836.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
 gi|228720897|gb|EEL72446.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
          Length = 456

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E+  P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      + +   EK I+       SL  V  DE+ 
Sbjct: 291 LFSLAQMEKHNFFIQVQEVHLHPFLTRITEKINVMYGEKQIKAVFTCPSSLL-VKLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV+ N+L+NA + +     ++++V     +   I IKD G GI   ++P +   F + 
Sbjct: 350 FEQVMANILNNAYRHSKEHSHINISVT-EEHKHISIKIKDKGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454


>gi|220909966|ref|YP_002485277.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219866577|gb|ACL46916.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1645

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 139/357 (38%), Gaps = 36/357 (10%)

Query: 163  VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
              L+   +   L        H +  +L   + T   +       L + + +  +      
Sbjct: 858  ALLAQLHIRALLVVSLRKGQHQVIWALISAVDTPRHWNESERVLLEQVSERTWAAIERAR 917

Query: 223  DLIAELE------VAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEV 273
               A  E        +S  +E R+RAE   E + AK+ F +++SHE RTPL         
Sbjct: 918  AEAALRESELQRIREQSAREEERQRAESLAELDHAKTLFFSNISHEFRTPLT---LSLAP 974

Query: 274  IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
            ++        +   +E +   HR+   LL L+N +LD SRIEAGR E       L     
Sbjct: 975  LQDALSDSSLSPVQRERLELAHRNSLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLSLFTT 1034

Query: 334  ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
            E   + +   +   +++     P    V+ D +   +++LNLLSNA KFT   G + VT+
Sbjct: 1035 ELASVFRSAIERAGLQLIVDCPPLPEPVYVDREMWEKIVLNLLSNAFKFTFT-GEITVTL 1093

Query: 394  G---------------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                   TS     + I+D G GIA   +P +   F Q   A  
Sbjct: 1094 RAESRVEQPASSGKVDDLTSELETSTGQVILEIRDTGTGIAAEHLPHLFERFYQVRGAQA 1153

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
             + +G G+GL +   ++   GG     S L EG      LP       +P+   ++T
Sbjct: 1154 RSHEGSGIGLALVHELVQLQGGTIAASSTLGEGTCFTITLPFG--TAHLPQQQIQTT 1208



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 133/349 (38%), Gaps = 30/349 (8%)

Query: 154  LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            +   +    +     P +        +        +  +L +A +    I   L      
Sbjct: 1288 MQTHLPDLILSDVMMPGLDGFQLLQTLRADPRTREVPILLLSARAGQEAIVEGLQAGADD 1347

Query: 214  ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA------KSRFLASMSHELRTPLNAI 267
             L       +LI+      +     + R E           K   L+++SHEL TPL +I
Sbjct: 1348 YLIKPFSAQELIS---RVNAHLHMAQLRGEMLQQERLLSKRKDELLSTVSHELNTPLVSI 1404

Query: 268  LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            LG++ ++      P +  T  + +  I R+      L+ ++LD+SRI  G+ +L    + 
Sbjct: 1405 LGWTRLLRTH---PPSPSTLAKALDTIERNATLQAKLVQDLLDISRITTGKLQLYPQPLD 1461

Query: 328  LIDIVRECIIMLQLRAQEKNIEIFQ------KIDPSLSSVWADEKGMRQVILNLLSNAVK 381
            L  ++   I  +   A  K IE+                V  D   ++QV+ NLL+NA+K
Sbjct: 1462 LRTVIEAAIATVAHLAAAKGIELVFGGSSDQAQQRDGVVVNGDSDRLQQVVCNLLTNAIK 1521

Query: 382  FTAIGGRVHVTVG--WTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            FT   GRV + +        GQ        I + D G GIA   +P +     Q      
Sbjct: 1522 FTPESGRVRIELSVIQVRDGGQIADTAYAQICVTDTGIGIAAHFLPHIFDRCTQAD--ET 1579

Query: 433  SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNF 480
             A +G+GLGL IA+ ++  H G    +S    +G   +  LP       
Sbjct: 1580 HASKGLGLGLTIARHLVELHHGTIQAQSGGTGQGSRFMVRLPLAPGNPE 1628


>gi|160900344|ref|YP_001565926.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160365928|gb|ABX37541.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 464

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 153/453 (33%), Gaps = 26/453 (5%)

Query: 53  PLFVLLVANIGTWFTQNP----IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108
            L   +   +  W+           M +    A+  A  +     +        +  W  
Sbjct: 1   MLASQIAGALLGWWLWGVMSASSPGMAAQAVAALTGALCAGWIWWLVDSWNAMRLLSWLR 60

Query: 109 WL-LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFL 165
              L     +   W   ++            + +    L  I  ++ A  N ++      
Sbjct: 61  QSELREAPELSGIWGEASVRMRRWLRQSVQQVQQGDQRLNDILSALQASPNGVVLLDADG 120

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-------KILSCQ 218
                    + Q         +   G L     F  Y     F  ++             
Sbjct: 121 RIEWCNQIAARQFGFDAERDLLQSIGNLVRDPEFSAYFATQDFSRDLVMQGRESTASRPV 180

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
                L    E  K L        E+    +  F+A++SHE+RTPL  ++GF E ++   
Sbjct: 181 KLSVQLYGYGEGRKLLLARDVTAVEQAEAMRRDFVANVSHEIRTPLTVLVGFVETLQNL- 239

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             PL  E    Y+G + +  + + +L+ ++L LSR+E      S   + +  +++ C   
Sbjct: 240 --PLEPEERNRYLGLMAQQAERMQHLVEDLLALSRLEGSPLPSSNEWVPVAQLMQRCENE 297

Query: 339 LQLRAQEKNIEIFQKIDPSLS---------SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +  +     +       S            V      ++    NLL+NA+++T  GGR+
Sbjct: 298 ARGLSSMLTRKQSLPHALSFPSAEMLAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRI 357

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            VT           +++D+GPGI    +  +   F +   +      G GLGL I + ++
Sbjct: 358 EVTWESLPDGSARFAVQDSGPGIEPKHLARLTERFYRVDRSRSRDTGGTGLGLAIVKHVL 417

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             HG +  I S   +G E     P +RV    P
Sbjct: 418 QRHGAKLGITSAPGQGSEFSVTFPASRVRIAAP 450


>gi|47569834|ref|ZP_00240503.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47553480|gb|EAL11862.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 453

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I     
Sbjct: 228 EKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETD 285

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+    
Sbjct: 286 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--I 343

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   ++Q+ LN++ NA+K++   G+V++    + G+   I +KD G GIA+  +P 
Sbjct: 344 ELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQ-AVIEVKDEGMGIAKEHLPY 402

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 403 IEQSFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 453


>gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 548

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 181/449 (40%), Gaps = 21/449 (4%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL-ITLAVYAANLS 88
           +  +        V      +  + L V L A  G   T  P    W + +  A       
Sbjct: 83  EAAWLGRTRRAIVFGSSAAAVAIGLGVALTALSG---TDLPSAWQWLVPLVYAATLLVRW 139

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
                    +            L  +  IG        V     + + +        ++ 
Sbjct: 140 PFTGPAEGQVSSETPG------LALEEMIG------AAVLRLQVSGDVVHASPKLEEVLG 187

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           ++   L        + ++     ++             + L   +  A        Y  F
Sbjct: 188 VAPEMLLGTGFFDRIHVTDRVAWLSTLGDLREGAGPRTLRLRLRVPAAPGLPIQAAYRSF 247

Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
             +V  L   A    L+ E      A+    E R  AE    ++   LAS+SHELRTPLN
Sbjct: 248 IFDVAALQDAAGVVALLREDVSTAAAEEALAEARHVAEAACRSRDEMLASVSHELRTPLN 307

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GF++++  E  G   N+  +EY+  I  +G HLL+++N ILD+S++++G Y +    
Sbjct: 308 AIVGFADLLANEMFGKFANDKQREYVEVIREAGTHLLSVVNAILDVSKVQSGAYGVEAKP 367

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
               D VR C+ M   +AQ K++E+   I   + +V  D+  ++QV++NLLSNAVKFT  
Sbjct: 368 FHFEDAVRLCMAMTTHQAQAKSVELKADIAGDIGTVRCDKNAVQQVLINLLSNAVKFTPS 427

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V VT    SG     ++ D G GI+  ++  V T F Q         +G GLGL + 
Sbjct: 428 -GEVKVTAHR-SGDRLEFTVSDTGIGISAEDLELVGTPFMQVRNDYTRKCEGTGLGLALV 485

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + ++   GG   I S    G  V   LP 
Sbjct: 486 KGLVRLQGGGLSIESAPGRGTRVHVSLPA 514


>gi|319939369|ref|ZP_08013729.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
 gi|319811355|gb|EFW07650.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
          Length = 450

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ +++++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVSDLLSL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L     +    +   +      + +  +K  EI +    +   V  D   M
Sbjct: 269 SRIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+++NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 IQVIDNIINNAIKYSPDGGKITVSMKTTDTQMI-LSISDEGLGIPKKDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 KARSRAQGGSGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|307578718|gb|ADN62687.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 510

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 232 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 291

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 292 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 348

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 349 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 407

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 408 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 467

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 468 TSPGLGKGAMFTVSL 482


>gi|182418495|ref|ZP_02949788.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237667746|ref|ZP_04527730.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377658|gb|EDT75203.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237656094|gb|EEP53650.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 546

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 6/311 (1%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F++F    +   ++ ++  ++        +   +         +     +++    E   
Sbjct: 208 FITFLGTDIMFFSRVLLMSNLYPDKYTMYVLNRIILCCGFAIIVISMFWEVIMMSKENKK 267

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           LI +    K      +   E     +++F A++SHELRTPLN ++   +++E ++    +
Sbjct: 268 LINDFNTQKLEILRLKHEEE----LRTQFFANISHELRTPLNIMICSFQLLESKSKDKDS 323

Query: 284 -NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E YK+Y   I  +   +L LIN I+D S+ EAG +++  +   +I ++ +  + +   
Sbjct: 324 LSEYYKKYENVISENSSRMLRLINNIIDASKFEAGCFKMDFANCEIIRVIEDITLSIAQS 383

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            + +   I    +     +  D + + +V+LNLLSNA+KFT   G + V+    +     
Sbjct: 384 EKSQKRNIIFDTNTEFLEIKCDPENIERVMLNLLSNAIKFTDNDGEIIVSCE-ENEDYLV 442

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I +KDNG GI       +   F Q   + +   +G G+GL I + I+ +H G+  I  ++
Sbjct: 443 IRVKDNGIGIPPEFRSRIFERFVQVDKSFRRNVEGSGIGLSIVKFIVDSHEGEIYINDEV 502

Query: 463 REGVEVIAILP 473
            +G E +  +P
Sbjct: 503 IKGCEFVVKIP 513


>gi|320160300|ref|YP_004173524.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994153|dbj|BAJ62924.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
          Length = 1087

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            I S  +L I +A  +   L               + L   A+   +  +       +  
Sbjct: 409 WIRSRVLLPIHIAQEVIGVLDLRRDQPTPSLLQQQQGLQLLADMLGIAIQNARLYQEARN 468

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHR 296
            +  AE  N  K+R LA++ HE+RTPLN ILG+++  +        ++   +  +  I +
Sbjct: 469 AQNTAERANQLKTRLLANVGHEMRTPLNVILGYAQSALNRHKRSGHHDTELERDLQIISQ 528

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML-QLRAQEKNIEIFQKID 355
           SG+HLL +IN++LDLSR E G   +    +    I+ E      +   Q   I    +I 
Sbjct: 529 SGEHLLRMINDLLDLSRAEIGALNMYFEWMDPRPIILEAFETFARSEEQNPFIRWRVEIP 588

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             L  + AD   ++Q++LNLLSNA KFT   G + ++          +S+ D G GI+  
Sbjct: 589 ERLPIIQADSARLKQILLNLLSNARKFTHE-GEIVLSAHVEPP-FLRLSVADTGEGISLE 646

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +   F   +   K    G+GLGL I + ++A HGG   + S+  +G      LP 
Sbjct: 647 QQERLFEPFS--ASMGKRRPSGIGLGLSITRHLIALHGGTLTLESQPGKGSTFYIYLPL 703


>gi|307941522|ref|ZP_07656877.1| two component sensor kinase [Roseibium sp. TrichSKD4]
 gi|307775130|gb|EFO34336.1| two component sensor kinase [Roseibium sp. TrichSKD4]
          Length = 438

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 159/432 (36%), Gaps = 22/432 (5%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R + ++ +   ++  I       P     +   +   A  L+       S      +  
Sbjct: 25  LRDAWLVLIASAVLCLIAVARYDIPESTALTAFCILALAILLTP----RRSKPAPPNLAP 80

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
            R  +       G+  T+  L  P                             L +++  
Sbjct: 81  -RREIGRVWPGTGMKVTVDALSSPCVIADGKGVTRYMNAAAEKTFGVGRVGDPLSFSLRA 139

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                       +  S  ++ +      A   +    I     +      +       +I
Sbjct: 140 PSLLEAFDRVATSASSERIVWMEKVPTEAWYEASLAPIYLPGNRVAAGRRAIPDFVLVVI 199

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           +++           +R E     ++ F+A+ SHELRTPL ++ GF E ++       + +
Sbjct: 200 SDMTEQ--------RRLE---RMRTDFVANASHELRTPLASLAGFIETLQ--GPAKDDPD 246

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             + ++  +      +  LI++IL LSRIE   +   +  + L+++VR     +   A+E
Sbjct: 247 ARERFLSIMFEQAGRMRRLIDDILSLSRIELKAHVKPDKDVDLVEVVRHTADAMAPLARE 306

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQ 401
            ++EI  +   +   V  D   + QV  NL+ NA+K+   G RV V++  +       G 
Sbjct: 307 LDMEISVQFPETSVVVKGDRDELIQVSENLVENALKYGMSGKRVEVSIASSDNGSSMSGT 366

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +S++D G GIA   +P +   F +  +    A +G GLGL I + I+A H  +  + S 
Sbjct: 367 SLSVRDYGEGIASEHLPRLTERFYRVDVDSSRAMKGTGLGLAIVKHILARHRARLDVNST 426

Query: 462 LREGVEVIAILP 473
             EG       P
Sbjct: 427 PGEGSTFTVEFP 438


>gi|229165595|ref|ZP_04293369.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
 gi|228617878|gb|EEK74929.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
          Length = 421

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 199 ERSEFLASVAHELRTPLTYVRGYADIALKENTPP---EQRLRYLSIIKDESDYITNLVQD 255

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      + +   EK I++      SL  V  DE+ 
Sbjct: 256 LFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLL-VKLDEQR 314

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV+ N+L+NA + +     ++++V     +   I IKD G GI   ++P +   F + 
Sbjct: 315 FEQVMANILNNAYRHSKEHYHINISVT-EEHKHISIKIKDKGEGIPPEDLPHIFDRFYRV 373

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 374 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|257792781|ref|YP_003183387.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|325831117|ref|ZP_08164441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|257476678|gb|ACV56998.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|325487038|gb|EGC89484.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 562

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 21/358 (5%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           +T++    +L+  ++  L      +A F       +  S     +   +   +AG     
Sbjct: 217 ITVFIGLVILVVTTVFVLRPLGGMHAAFGELKQGRLGASVSQRFAAKEVRSLIAG----- 271

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-------LAK 249
              F  +   L      + S   E+     +L  A +L +  R + E+ N         K
Sbjct: 272 ---FNDMAGELRGMYEHLESQVQER---TVDLREANALLERQRDKLEQLNADLAQETQFK 325

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S  L+ ++HELRTPL +I+ F++ I  E   P  NE  +    +I ++ + LLN+IN +L
Sbjct: 326 SDLLSMVNHELRTPLTSIITFAQ-ISREACDP-ANEHDRRSWEEIEKNSRILLNMINNML 383

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D++R +AG    +   + L D+       +   A++  +    K+   +  V  D +   
Sbjct: 384 DIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVNGDYEKTT 443

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +++ NL SNA+KFT  GG + + V + +      +S+ D+G GIA  +   +   F Q  
Sbjct: 444 RMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQARIFERFVQVD 503

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
                   G GLGL + +      G    + S+L  G   +  +P + ++  I  ++ 
Sbjct: 504 STSTRKYNGSGLGLALVREYGDMQGFAVSVESELGRGSRFVITIPASAIVGEIEGEDD 561


>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 855

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 30/342 (8%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           +   +L   V L    +V  L+ Q I+   +     A  LA +            +    
Sbjct: 153 MYYIILLCLVALGVTILVGILTAQWIIGPLLNLNITAKALAQSQWQPMIEVKRRDEVGEL 212

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
             S       L       K+ + E ++     +  K  FLA+ SHELRTPL  I+G +E 
Sbjct: 213 AKSFSRMTKQLQDLFTTLKAKNAELKR----LSQLKDEFLANTSHELRTPLQGIIGIAES 268

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L+ +T  E +  I  SG+ L NL+N+ILD S+ +  + EL    +++ +I  
Sbjct: 269 LIDGASGQLSQQTCSE-LSIIIASGRRLSNLVNDILDFSKHKHKKIELQTKPVNMREITD 327

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +   Q     K++++   I   L    ADE  ++Q++ NL+SNA+KFT   G V ++ 
Sbjct: 328 IVLRFCQPLIGHKDLQLINNIPSDLPPANADENRVQQILHNLVSNAIKFTEK-GVVKISA 386

Query: 394 GWTS----------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
             +                        +   I++ D G GI   +   +   F Q +   
Sbjct: 387 QLSDNASLSIENIQPTEKNQSTKLPPDKCLTITVSDTGWGIPSDKTQKIFDFFEQLNS-- 444

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            S   G GLGL I + ++  HGG+  + S    G   +  LP
Sbjct: 445 NSTINGTGLGLAITKQLVELHGGKIWLESTEDVGSRFLFTLP 486


>gi|163849056|ref|YP_001637100.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527024|ref|YP_002571495.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670345|gb|ABY36711.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450903|gb|ACM55169.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 502

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           AEE  + ++RF+AS SHELR PL  I   +EV         ++   +E + D+     H+
Sbjct: 273 AEEAWVRQTRFIASASHELRAPLTLIRASAEVALRHA----DDPDQRELLSDVLSESDHM 328

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L++++L LSR+++G   L    +SL   + +    ++   +EK I I     P   +V
Sbjct: 329 RRLVDDLLTLSRLDSGALVLQRQPVSLPSFLADLHRQVRRLGEEKGIAIQL--APITGTV 386

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            AD   +RQV+L L+ NA+++T  GG + +     +G+   +S+ DNG GIA   +P + 
Sbjct: 387 LADPDRLRQVLLILIDNALRYTPSGGVITIATEP-AGKQIRLSVSDNGCGIAPEHLPHLF 445

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F +  +A   ++   GLGL IA+ ++  H G   I S++  G  V   LP  
Sbjct: 446 ERFYRVDVARNRSDGHAGLGLAIAKGLVEAHSGAIGIESEVNRGTRVWFTLPVA 499


>gi|224539091|ref|ZP_03679630.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519295|gb|EEF88400.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 642

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              I E  + +      + +AEE +  KS FLA+MSHE+RTPLNAI+GFSE++       
Sbjct: 248 QRDITEDIIYQQNLITAKNKAEEADKLKSTFLANMSHEIRTPLNAIVGFSELLTET---- 303

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + E   EY   I  + + LL LI +ILDLS+IE G  +++   ++L  +  E     Q 
Sbjct: 304 DDAEEKFEYKQLIETNSEILLKLIGDILDLSKIEVGSIDINRQKLNLCQLCDELYRSFQQ 363

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           R +   + +      +      D+    Q+  N  +NA+K+T   G + +      G+  
Sbjct: 364 RIKNPKVTLKLINPYTKCVANFDKYRFMQIFTNFATNAIKYTPQ-GEIVMGYECMPGQ-V 421

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD+G GI E +   + + F +      +  QG GLGL I ++I    GG+   +SK
Sbjct: 422 RIYVKDSGIGIPEEKKNRIFSRFEKLD----TFAQGTGLGLSICKAIADATGGEVGFKSK 477

Query: 462 LREGVEVI 469
              G E  
Sbjct: 478 ANIGSEFW 485


>gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1064

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 25/260 (9%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K   +A+MSHELRTPL AILG+SE++       L    +   I  I   GQ LL+
Sbjct: 548 ELDRLKEELVANMSHELRTPLTAILGYSELLLKRRTEVLT-PWHTTKIEGIRTGGQRLLS 606

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LD+++++AGR EL      +  +++E + +LQ   +EK   +  ++   +  +  
Sbjct: 607 LVNDLLDIAKLDAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQHIPLLMI 666

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----------------------WTSGRG 400
           D + + Q + NLLSNA+KFT   G + +                            +G+ 
Sbjct: 667 DPERIGQAVTNLLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVPPMLAGQY 726

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D+G G+    +  +   F Q          G GLGL I Q ++  HGG+    S
Sbjct: 727 VLIQVSDSGVGVPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHGGRTWATS 786

Query: 461 K-LREGVEVIAILPNTRVLN 479
               +G     +LP +R   
Sbjct: 787 AGENQGSSFTIMLPVSRGAQ 806


>gi|104782773|ref|YP_609271.1| two-component sensor/response regulator protein [Pseudomonas
           entomophila L48]
 gi|95111760|emb|CAK16484.1| putative two-component sensor/response regulator protein
           [Pseudomonas entomophila L48]
          Length = 1210

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 12/265 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A++ N AKS FLA++SHE+RTP+NA++G  E+ +     G L+
Sbjct: 689 ISERRNLVQDLRLAKQQADDANRAKSTFLATISHEIRTPMNALIGMLELALRRADQGQLD 748

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  +   H S Q LL LI +ILD++RIE+G   L+   + L  +V     +    A
Sbjct: 749 RPA----LEIAHHSAQDLLGLIGDILDIARIESGHLTLAPEPVDLAMLVESVGRVFDGLA 804

Query: 344 QEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           + K + +     D +   V  D    +QV+ NL+SNA+KFT   G+V ++V   +G  + 
Sbjct: 805 RHKGLALKVAITDAAHCHVMLDPLRFKQVLSNLVSNAIKFTEQ-GQVRISVKLRNGNERE 863

Query: 403 -----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + ++D+G GI E ++  + T F Q +     A  G GLGL I++++    GG+  
Sbjct: 864 APILDLEVRDSGIGIHEEDVQRLFTPFAQANPYSDGARAGTGLGLVISRNLCTMMGGELS 923

Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482
           ++S    G  V  ++P   V    P
Sbjct: 924 LQSLQGVGTRVRLVMPLRCVDPEEP 948


>gi|226310398|ref|YP_002770292.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093346|dbj|BAH41788.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 522

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 22/295 (7%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEK---------DDLIAELE--VAKSLSDETRKRAEEE 245
           +  + +IT  + K  + +L   AE            L  + E        +  RKR +E 
Sbjct: 225 VLLYRWITRSVVK-PLDLLRHSAENIKEGNLDFELHLYTKDEIGQLNEAFENMRKRLQES 283

Query: 246 -------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                    ++   ++++SH+LRTP+  I G+ E I          E   +Y+  I+   
Sbjct: 284 VGLRLADEESRKELISNISHDLRTPITNIKGYIEGIRDGV--ADTPEKMDKYVNIIYSKA 341

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357
             L  L++E+   S+++  +   +   + ++  + +CI  L    ++K I I        
Sbjct: 342 VDLDLLVDELFLYSKLDLKQVPFTFEHVDIVQFLDDCIDELHYDLEKKGITIQWNQRTAE 401

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            + V AD + +++ +LN++ N+ K+     +V             I IKDNG GI +  I
Sbjct: 402 GTLVIADLEKIKRTVLNIIGNSQKYMDKPEKVICVSVQADAHWATIEIKDNGIGIPQEAI 461

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           P +   F +   +  S+  G GLGL IA+ I+  HGG+  + SK   G  V   L
Sbjct: 462 PHLFERFYRVEQSRNSSTGGSGLGLSIARQIVEGHGGKIWVESKQGVGTSVFFTL 516


>gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148512903|gb|ABQ79763.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1210

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E         + +++A++ N AKS FLA++SHE+RTP+NA++G  E+          +
Sbjct: 687 ISERRQLVMELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD 746

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +   H S + LL LI +ILD+ RIE+G   L+   + L  +V     +   +A+
Sbjct: 747 ---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQAR 803

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K + +  +I P+    V  D    +QV+ NL+SNA+KFT   G+V + V          
Sbjct: 804 QKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFT-EHGQVRICVSLLDDGTSTP 862

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D+G GI   ++  +   F Q +   + A  G GLGL I +++    GG   +
Sbjct: 863 AVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSM 922

Query: 459 RSKLREGVEVIAILPNTRVL-NFIPEDNHESTQ 490
           +S    G +V   +P  RV     P+   E   
Sbjct: 923 KSLEDVGTQVRLKMPLQRVDGAEQPKPLPEQLD 955


>gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
 gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
          Length = 769

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 145/331 (43%), Gaps = 8/331 (2%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           +L A+ +  +++  L    F++   + +  + + + +  + +  +       +       
Sbjct: 1   MLTAIVLVVIASHYLSN--FITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSF 58

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +S  + +S    ++    ELE    +  +     +  N  K  FLA+ SHELRTPL
Sbjct: 59  ERMQRSIREKISLIKSQNK---ELENNLLIIRKQNDELQLANKLKDEFLATTSHELRTPL 115

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           + ++G +E +     GPL    +K  +  I  SGQ L  L++++LD  ++  G  ++ + 
Sbjct: 116 HGMIGIAEALVSGANGPLT-AAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQKG 174

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           A+ L    R  + +      +K + I  ++      V AD + + QV+ NL+ NA+K+T+
Sbjct: 175 AVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTS 234

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G++ ++  +       + + D G GI   ++  +     Q         QG GLGL I
Sbjct: 235 E-GKIVISATYI-DDKVRVQVVDTGQGIPAEQLEQIFEPLIQAGRDASRYRQGAGLGLSI 292

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++ ++    G   + S+   G      LP  
Sbjct: 293 SRQLIELMNGTLYVSSQPMVGTTFSFTLPLA 323


>gi|261419125|ref|YP_003252807.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319765942|ref|YP_004131443.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261375582|gb|ACX78325.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317110808|gb|ADU93300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 354

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 151/355 (42%), Gaps = 33/355 (9%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +   ++L  +++  + +     A F     +  A+ T+       L   +   +     F
Sbjct: 6   FVLKSVLTVIAVMTIISLFWTAAYF-----ITEAIYTRFAWRPQPLVRQIITSIFGFFLF 60

Query: 200 FTYIT----------YHLFKSNVKILSCQAEKDDLIAEL-----------EVAKSLSDET 238
              ++            L++  +  L+  A+ D  +              E+   ++D  
Sbjct: 61  GISMSAISPFLRKREKMLWQHLMDALNRIAKGDFRVNLRVDWGERNHWFGELVTRINDMA 120

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
               +     +  F++++SHE+ +PL +I GF+  ++ E +   + E    Y+  I    
Sbjct: 121 -ANLQAMEEMRQEFISNVSHEIGSPLTSIRGFARALKNENL---SREQRMHYLDIIETEC 176

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             +  L   +L L+ +++ R+    ++  L   ++  I+  + +  EK +++   ++   
Sbjct: 177 VRMSKLSENLLRLAMLDSDRHPFHPTSYRLDTQLQTLILHCEPQWAEKELDMCVMLEK-- 234

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + A E  + QV LNL+ NA+KFT  GG + + +     +   I+  D GPGI+E + P
Sbjct: 235 VVITAYEDLLSQVWLNLIHNAIKFTPKGGTITIQLQRRGEQ-AIITFSDTGPGISEHDQP 293

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +   +   A  G GLGL IA+ I+  H G   ++S+  EG   I  LP
Sbjct: 294 RIFERFYKADKSRHRAAGGSGLGLSIAKKIVDIHHGTISVQSQPGEGATFIVELP 348


>gi|189467816|ref|ZP_03016601.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
 gi|189436080|gb|EDV05065.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
          Length = 1331

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 132/308 (42%), Gaps = 28/308 (9%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
              +++H    +              I Y +          + E  + I            
Sbjct: 738  FSITIHPAWYASGWAKFIYGVLLIVIIYGIVIQIRHRYRARQEILEHIH----------- 786

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
                AE+ N AK +F  ++SHE+RTP++ I+   + +        +NE  K Y   I+R+
Sbjct: 787  ----AEQINEAKLQFFINISHEIRTPMSLIISPLQKL---IATDKDNERQKNY-HTIYRN 838

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             + +L L+N+++D+ +I+ G+  L    + ++  +R+     + +A  ++I +  + +  
Sbjct: 839  AERILRLVNQLMDIRKIDKGQMSLKFQEVDIVGFIRDLYYTFEYQANARHITLSFQPETE 898

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNG 409
                W D K   ++ILN++SNA KFT   G +++ +                 I ++D+G
Sbjct: 899  KLKAWIDPKNFDKIILNIISNAFKFTPENGEINIYLRIGEDINASQSLKHYFEIIVEDSG 958

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE-GVEV 468
             GI   E+  +   F Q   +  ++  G G+GL +++S++  H G     +     G   
Sbjct: 959  IGINPEEMGRIFERFYQIRNSHNNSNVGTGIGLHLSRSLVELHHGTIKAENNENRPGSRF 1018

Query: 469  IAILPNTR 476
            I  LP  +
Sbjct: 1019 IIRLPLGK 1026


>gi|218232323|ref|YP_002366680.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218160280|gb|ACK60272.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 357

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 149/347 (42%), Gaps = 18/347 (5%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGML 193
               +   + L I  SI+      L  A  ++  P V  L +        +L  +L G+L
Sbjct: 16  FGAVLALFSILTIIWSIAFYVATSLLNAFDVNVSPFVAFLISDMVGFVFIILIWTLIGIL 75

Query: 194 ATA--LSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAEEEN 246
                 +    I   + K      S +   ++     +   ++    ++DE         
Sbjct: 76  MRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN----TME 131

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  L  
Sbjct: 132 KMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSKLSQ 188

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V AD++
Sbjct: 189 NLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VYVIADQE 246

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV +NL+ N++KFT  GG + + +         + I D+G GI E +   +   F +
Sbjct: 247 SMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIHDSGIGILEEQKQHIFERFYK 305

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              +   A  G GLGL I + ++  H G+  + S+  +G E I  +P
Sbjct: 306 ADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352


>gi|322376760|ref|ZP_08051253.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
 gi|321282567|gb|EFX59574.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
          Length = 449

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 835

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 126/252 (50%), Gaps = 16/252 (6%)

Query: 232 KSLSDETRKR-----AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                E + R     AE  N AKS FLA+MSHE+RTPLNAI+GFSE+++ E +       
Sbjct: 440 NRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIRTPLNAIIGFSEILKNEGL----PAE 495

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E +  I+ +G+ LL LIN++L++S+I+A + E+    I L  ++ +   + + + ++K
Sbjct: 496 ALESVEAINAAGESLLALINDVLEISKIDADKLEIIYGWIRLETVLGDVGRIFEPQLRQK 555

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
            + +  +I  SL         +RQ++ NLL NAVKFT   G V V      G G      
Sbjct: 556 QLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVKFTVS-GSVTVMAAVRKGTGNQAELE 614

Query: 403 ISIKDNGPGIAEGEIPTVLTSF--GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           I++ D G GI   +   +   F   +   A   A +G GLGL I + +     G+ L+ S
Sbjct: 615 IAVTDTGSGITPEDQKKIFEPFVQSRTGDAGGDASEGTGLGLAIVRRLAEKMNGEVLLES 674

Query: 461 KLREGVEVIAIL 472
           +   G     + 
Sbjct: 675 EPGRGSRFRIVF 686


>gi|163847987|ref|YP_001636031.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525869|ref|YP_002570340.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163669276|gb|ABY35642.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449748|gb|ACM54014.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 379

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 10/371 (2%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
           R  LL+  +       L  L     + P        A L    + +A ++ +       +
Sbjct: 11  RYRLLLSHLLTIAAGALTLLTITIIFAPGLHDQLMIAWLGPHWTETADASMVEMERATNA 70

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            F + +  +   I S   + +++   L  +      I + L  +        AE+  LI 
Sbjct: 71  IFTLAMIQALT-ISSGAAVTVAIIVSLVASRQIVQPIDHLLQVTRRIAAGHYAERAPLIG 129

Query: 227 ELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E+ +  +      +  E     +   +  ++HELRTPL  I G+ E I    +     
Sbjct: 130 DRELTRLAAQFNMMAEALERAEQRRVALIGDVAHELRTPLATIAGYVEGILDGVV----- 184

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ET +     +      L  L +++  LSR+E+ +  L+ + +    ++   +  L  +  
Sbjct: 185 ETDEATWALVLDEVNRLRRLTDDLQQLSRVESRQITLAPTPVDPAHLIEAAVTRLTPQFT 244

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            KNIE+   I+  L  VWAD   + QV++NLL NA+++T  GGRV +     +       
Sbjct: 245 AKNIELHVNIEQHLPPVWADSDRILQVLINLLGNALQYTPGGGRVVIGAEH-ASEAIRFW 303

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463
           ++D+G GIA   +P +   F +   +   A  G G+GL I + ++  HGGQ    S    
Sbjct: 304 VQDSGIGIAAEHLPHLFERFYRVDKSRTRATGGAGIGLTICKGLVEMHGGQIWATSAGPG 363

Query: 464 EGVEVIAILPN 474
            G      LP 
Sbjct: 364 CGATFYFTLPL 374


>gi|76803907|gb|ABA55850.1| para-aminobenzoate synthase [Vibrio sp. DAT722]
          Length = 567

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 13/267 (4%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + V  L        L  E E+A      +RKRAEE   A   F+A ++HELRTPLN +LG
Sbjct: 172 ALVSDLVHGVISRHLSMEREIA------SRKRAEESERATKEFVAMINHELRTPLNGVLG 225

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +E++    +         +Y+ ++ +SG+ L  +IN++LD S++ AG  E+     +  
Sbjct: 226 SAELLGRTDLET----EQHQYLTNLMQSGELLRVIINDLLDFSKMNAGMMEIIRKDFAWP 281

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388
           ++    + +   +A EK I         +   +  D + + Q+++NL+ NA+KFT +GG 
Sbjct: 282 ELESSLMGVFAAKAAEKRIHFSIDKKLGIPNYLNGDAERITQILVNLVGNAIKFTKLGG- 340

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V + V W         ++D G GI      T+   F Q   + K   +G GLGL I +++
Sbjct: 341 VVLRVEWL-DGHLCFDVEDTGIGIPLDAQATLFDPFVQVDRSSKRNFEGSGLGLAITKNL 399

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475
           +    G+    SK ++G      +P  
Sbjct: 400 VELMDGEISFVSKEKQGTIFKVSIPLA 426


>gi|71909071|ref|YP_286658.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848692|gb|AAZ48188.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 1055

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 150/335 (44%), Gaps = 26/335 (7%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
           ML   +  +   +V A +   I   ++    LA +     +    ++   F   V  L  
Sbjct: 222 MLRGWIIAALLLLVGAGAVLVISYNYLKKHLLAPLTVLHQTAIA-LSKKAFNQRVGDLQG 280

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAE--------------EENLAKSRFLASMSHELRTP 263
             E   L A ++   +  +   ++ E                  AKS FLA+MSHE+RTP
Sbjct: 281 VEEVRALAATIDSMAAAIEADLEQRELVQRALRQARARAEVAAEAKSIFLANMSHEIRTP 340

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +NAILG + +     +         +Y+  IH + + LL ++N+ILD S+IEAG+  L  
Sbjct: 341 MNAILGMAYLALKSKL----PPRQHDYVSKIHSAARSLLGILNDILDFSKIEAGKVALEA 396

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVK 381
               +  +++  + M+Q + + K IE+     PS S   +  D   + QV++NLLSNAVK
Sbjct: 397 VLFDIETVLQNALFMVQQKVEGKQIELILDFKPSRSMRFLLGDPLRLGQVLINLLSNAVK 456

Query: 382 FTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V + V   +  G        ++D G G++  ++  +   F Q   +      G
Sbjct: 457 FTER-GHVRLVVSEAACDGATSTISFRVEDTGIGMSPEQVGRLFQEFSQADGSTTRKYGG 515

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I++ ++A   G+  + S L +G      +
Sbjct: 516 TGLGLAISKRLVAAMSGEIGVESTLGKGSVFHFSI 550


>gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1427

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 118/262 (45%), Gaps = 8/262 (3%)

Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +E R+RAE     + AK+ F +++SHE RTPL  +L   E +  +   P +    +  +G
Sbjct: 344 EEERRRAEALAEIDRAKTAFFSNVSHEFRTPLTLMLSPLEEVMTQAALPDD---QQALLG 400

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             HR+G  LL L+N +LD +RIEAGR     + + L     E     +    +  + +  
Sbjct: 401 IAHRNGLRLLKLVNTLLDFARIEAGRVTAQFTPVDLPSFTAELASNFRSAIDKAGLRLII 460

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPG 411
              P    V+ D +   +++LNLLSNA KFT   G + VTV          I + D G G
Sbjct: 461 DAPPLPQPVYVDREMWEKIVLNLLSNAFKFTFA-GEIAVTVRAGPDGRSAEIVVSDTGTG 519

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   EIP +   F +   A   + +G G+GL + Q ++  H G   + S+L  G      
Sbjct: 520 IPPTEIPHLFERFRRVEGARGRSIEGSGIGLALVQELVKLHSGSLSVESELGRGSAFRVT 579

Query: 472 LPNTRVLNFIPEDNHESTQYKC 493
           LP            H + Q   
Sbjct: 580 LPFGAAHLPAERPQHSALQIST 601



 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 109/326 (33%), Gaps = 34/326 (10%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
            M    +    AG                   + ++      +  +IA +  A  +++  R
Sbjct: 986  MIRDAVAAVAAGETVRRELHINLPVGGWRWFDFQMRPVHDAQGQVIAIVPEAVEITE--R 1043

Query: 240  KRAEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            ++AEE         A  +    ++H+    L  I   ++++    + P   +  + Y+  
Sbjct: 1044 RKAEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRELPP---DRMRRYVDA 1100

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            I  +      L  ++L  +R    R+  +         + +   ML+  A          
Sbjct: 1101 ISDTADRAAKLTGQLLTFAR----RHAQNRQVFDAAHQIEQIAEMLKT-ALGSRASFALT 1155

Query: 354  IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYI 403
            +     +V AD       ++NL++NA       G + + V   S               +
Sbjct: 1156 VAERPLAVEADANQFDAALVNLVANARDAMDGQGALEIRVARASPTAQETAAGIEGVVAV 1215

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            SI D G GI   +I  +   F       K   +G GLGL          GG   + S++ 
Sbjct: 1216 SIADTGSGIPPDKIDRIFEPFF----TTKEIGRGTGLGLSQVYGFAKQSGGNVTVDSEVG 1271

Query: 464  EGVEVIAILPNTRVLNFIPEDNHEST 489
             G  +   LP    L+  P +  E T
Sbjct: 1272 AGTTITLRLP----LSAKPIEARERT 1293


>gi|254458425|ref|ZP_05071850.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207084733|gb|EDZ62020.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 514

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 6/241 (2%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                ++A+E  +AK +FLA+MSHELRTPL AILGFS++I      P   E     +  I
Sbjct: 275 LVLATRKAQESQMAKEQFLANMSHELRTPLTAILGFSQMIMARADTP---EIISNCVSKI 331

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
           + +G +LL  +N ILDLS+IE+G+         L  +  E  ++L+ +A++KNI +   +
Sbjct: 332 NIAGINLLTQVNTILDLSKIESGQMTYQFDNFQLKPLFEELRVILESQAKDKNISLIMPM 391

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIA 413
                 +  D+  ++QV +NLLSNA+KFTAI   V ++       +     + D G G+ 
Sbjct: 392 I-DKEEMHGDKLSIKQVFMNLLSNAIKFTAINTTVEISYTCNIEQKEHIFKVYDQGDGVD 450

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAIL 472
           E +I T+   F QG  +  +A  G GLGL I + I+   H G+  + +    G      +
Sbjct: 451 EKDIQTLFEPFYQGENSRINATPGTGLGLAICKKIVTDVHKGKIGVENIKNGGSCFYMTI 510

Query: 473 P 473
           P
Sbjct: 511 P 511


>gi|160937186|ref|ZP_02084548.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439750|gb|EDP17499.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
          Length = 837

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 133/240 (55%), Gaps = 11/240 (4%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           +KS FL++MSH++RTP+NAI+G +++ E   +   + E  K+ +  I  S +HLL LIN+
Sbjct: 460 SKSVFLSNMSHDIRTPMNAIVGMTKLAE---IHIEDREKVKDCLYKIGISSKHLLELIND 516

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEK 366
           +LD+S+IE+G+  L+  + SL ++++  I ++  + Q KN     +  D     +  D  
Sbjct: 517 VLDMSKIESGKLVLTSESFSLTELIQRNIAIVNPQYQAKNQVFVTETKDIRHEYLLGDSL 576

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVL 421
              QV+LNLLSNA KFT   G + +TV     +        I++ D G GI+   +P + 
Sbjct: 577 RFNQVLLNLLSNAGKFTPENGTITLTVKELPQKHSGHAVYRIAVADTGIGISPEFLPKLF 636

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLN 479
             F +     ++  +G GLGL I+++I+A  GGQ  + S+L EG        LP ++  +
Sbjct: 637 LPFERERSRHQNQAEGTGLGLVISKNIIAAMGGQIYVESRLGEGSVFTVEVELPLSKEAD 696


>gi|123401570|ref|XP_001301889.1| ATPase [Trichomonas vaginalis G3]
 gi|121883123|gb|EAX88959.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1378

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 10/263 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + ++E A    +E RK A E N  K+ FLA+MSHE+RTP+N I G  ++I    +     
Sbjct: 875  VTDVERANQELEEQRKIAVEANKQKTLFLANMSHEIRTPMNPIFGLLDIIAQGEITG--- 931

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +  +  +      LL L+++ L+LS+IE G  E++ +       +   I+    RA+
Sbjct: 932  -EQRLLVDTMRSLSFQLLKLLDDTLNLSKIEQGDMEMNVATFDFWAAIEPAIVASASRAR 990

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            +  I+   +  P     +  D   ++Q++ NL SNA+KFT   G + + V W     Q  
Sbjct: 991  KDGIKFIVRSSPKFPLKINHDVHLIQQILNNLFSNALKFTKK-GFIELAVSWAEEEDQEV 1049

Query: 402  -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              I++ D G GI+  +   +   + Q   +      G GLGL + Q I+   GG   + S
Sbjct: 1050 IRIAVSDTGIGISYDQQKIIFQRYFQADPSNPVHYGGSGLGLALVQEIVHFIGGSLRLES 1109

Query: 461  KLREGVEVIAILPNTRVL-NFIP 482
            +  +G   +  +P        +P
Sbjct: 1110 EPGKGSTFLIDIPIESAYFPTLP 1132


>gi|114570615|ref|YP_757295.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341077|gb|ABI66357.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 572

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 147/388 (37%), Gaps = 19/388 (4%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W     +  + I +  TL+               +     ++           L  A+ +
Sbjct: 43  WLRRPSITMVFIAVSTTLVYAGAIYGNRGVVPPAFAYLPCILLGFYQFWGPRSLYAALPV 102

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                   ++   I         +   +A  L+    I+      +V+ L+         
Sbjct: 103 VGAAFAGVIALADIADTPAAYPLVTHSVALMLACIWLISLAAVFGSVQKLAE-------- 154

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
           ++L  A +        +     AKS FLA++ HE+RTPLN +LG ++V+         + 
Sbjct: 155 SQLRQANADQAAALSSSRAAQRAKSEFLANVGHEVRTPLNGMLGMADVMHQ---VGGLSP 211

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E +  I  SG  LL L+NEILD S+IE G+         L  +V +     +  A+ 
Sbjct: 212 DQDERLQLIRDSGATLLELLNEILDQSKIETGQVMAERIDFDLGKLVEKAASSWRPEAES 271

Query: 346 KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           + +++   +       +  D   +RQ++ NL+SNA+KFT   G V + V  + G      
Sbjct: 272 RGLDLHLDLAALHHPVLQGDPLRIRQILNNLVSNALKFTKT-GHVALKVEQSPGATATTW 330

Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I + D G GI   ++  +  +F Q   +I     G GLGL I++ +     G   + 
Sbjct: 331 NTRIEVTDTGSGIPSEKLEAIFEAFHQADASITRRYGGTGLGLSISRQLAHLMDGTLDVT 390

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487
           S    G      LP        P D  E
Sbjct: 391 STPGRGSCFALNLPLA-AGELAPADTAE 417


>gi|117926505|ref|YP_867122.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610261|gb|ABK45716.1| amino acid-binding domain sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 1251

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 14/255 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L    +  +  S E R      +  K+ FLA+MSHE+RTPLNAI+G S + +     
Sbjct: 536 NRKLSRLTKQLQLASAEARV----ASETKNLFLANMSHEVRTPLNAIIGMSRLAQD---- 587

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  ++Y+  IH + Q LL +IN++LD S++EAG+  L  +   + +++     +L 
Sbjct: 588 LREEHVRQDYLVKIHGASQSLLAIINDLLDFSKLEAGKLALERTPFQIDEVIANINAILG 647

Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
            +A +K + I   +D  +   V  D   + QV++NL+ NAVKFT   G + + V   +  
Sbjct: 648 HKAVQKELSIRYYVDADVPNHVVGDPLRLGQVLINLMGNAVKFTDQ-GYIALRVEQVAHS 706

Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S+KD+G GI+   +  +  +F Q   +I     G GLGL I++ ++   GG 
Sbjct: 707 EHRLRLRFSVKDSGVGISPSAVAGLFQAFTQADNSITRRFGGTGLGLVISRELVKVMGGD 766

Query: 456 FLIRSKLREGVEVIA 470
             + S+L  G     
Sbjct: 767 IHVESELGVGSRFFF 781


>gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 786

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 9/288 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +         +       +   E     + RAE  N AKS FLA+MSHELRTP
Sbjct: 480 ERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEFLANMSHELRTP 539

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+GF+E++E E  G L +  Y +Y  DI +SG +LL++I++IL +SRIEA R +L  
Sbjct: 540 LNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVR 599

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L   +   + ++   A  K++ I  ++  +L  V ADE+ ++Q++LN++ NAVKFT
Sbjct: 600 RDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQILLNIIQNAVKFT 658

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GR+ +  G +     ++ I D G GI +  I  +   F Q    +  + +G GLGL 
Sbjct: 659 PERGRIALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTRSYKGSGLGLA 717

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHES 488
           IA+S    HGG   IRS+   G  V+  LP     R+     E   ++
Sbjct: 718 IARSTAELHGGSLRIRSEEGIGTLVLVRLPMPTPERLAEVAREAERDT 765


>gi|148656185|ref|YP_001276390.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148568295|gb|ABQ90440.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 504

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 14/326 (4%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
             L    +   F  V+ L   A     +   +   +   A +  + +        + +  
Sbjct: 175 HALQLLFYALTFGGVIVLLAAARGGAWLTRAAFRPIDEIAQTAQSIVRAEDLSRRIPVPP 234

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E   L   +    +       R EE    + RF+A +SHELRTPL A+ G  EV+  
Sbjct: 235 AADELQRLTITVNDLLA-------RMEELFNTQRRFIADVSHELRTPLTAMQGNLEVLAR 287

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 + +   E + D+ R    L+ ++N++L L+R +AG  ++    + L  ++ E  
Sbjct: 288 GA--ARDPQLLNESLDDMRREVARLIRMVNDLLLLARSDAG-IQIRRDPVELDTLLLETY 344

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L+L A + ++ I    +   + V  D   ++Q +LNL  NA++ T  GG V +++   
Sbjct: 345 RELRLLAGQVHLRI---GEEDQAVVTGDRDRIKQALLNLGVNAIQHTPPGGEVTLSLT-V 400

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                 +S+ D G GIA  ++P +   F +   +      G GLGL I +S++  H GQ 
Sbjct: 401 RDGYAVLSVADTGYGIAPQDLPHIFDRFYRADRSRSRNGGGAGLGLSIVRSVVEAHSGQV 460

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIP 482
           L+ S+   G     +LP     +  P
Sbjct: 461 LVTSEPGRGSVFTMLLPLAVQPDRTP 486


>gi|330685290|gb|EGG96951.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU121]
          Length = 608

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 5/238 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           ++    +  F+A++SHELRTPL ++  + E +E       N      ++       + ++
Sbjct: 370 QQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQ--FLSVTREETERMI 427

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LS+++    ++++  +     + + I   ++ A++      ++I        
Sbjct: 428 RLVNDLLQLSKMDNESDQITKEIVDFNMFINKIINRHEMAAKDT--TFVREIPQQTIFAE 485

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVL 421
            D   M QV  N+++NA+K++    RV   V   +      I IKDNG GI   ++  + 
Sbjct: 486 IDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIF 545

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
             F +   A      G GLGL I++ I+  H G+    S   +G  +   LP   + +
Sbjct: 546 DRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVESQGTSIFITLPCEIIED 603


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 9/355 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W  +  +           +     +L A S+  L  F    +  ++     +  + + + 
Sbjct: 335 WAFIAEISTREAYAPIRQLETLVIVLGAGSVLLLILFSRWLSHSITAPLRSLTEAAEQVA 394

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +            +        H+ +S    +    ++   + +      L+ +   
Sbjct: 395 DGALDHPIAIERTGDDIDRLAEAFRHMQRSVKDKIELIEQQTQELQQQ---VKLTHKQNL 451

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++ +  K   LA+ SHELRTP++ I G +E +          E  ++ +G I +S   
Sbjct: 452 SLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQD--LTEGQQKQLGLIIKSADG 509

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G+ E+    +S   ++R  + + Q   Q K + +       L  
Sbjct: 510 LARLVDDLLDYHQMRYGQLEIHSQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISPAELPP 569

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V ADE+ + QV+ NL+ NA+K+T   G+V ++          I + D G GIA   +  +
Sbjct: 570 VLADEQRLEQVLYNLVGNAIKYTPQ-GKVVLSA-IVENNFLRIKVTDTGIGIAPDHLEHI 627

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q S  +   +QG GLGL I + ++   GG+  + S+   G      LP  
Sbjct: 628 FEPLVQMSPEVS--KQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLPLA 680


>gi|322420155|ref|YP_004199378.1| histidine kinase [Geobacter sp. M18]
 gi|320126542|gb|ADW14102.1| histidine kinase [Geobacter sp. M18]
          Length = 562

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 5/301 (1%)

Query: 187 ISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
             L    AT+++        LF+ S +       E  +    L+           + +  
Sbjct: 23  YLLTAWTATSIAKKISQERSLFQLSELTYRGLSNELSNRAQNLQTTLDALTLVHLKLKNI 82

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  ++ FL +++HELRTPL+ I  +SE++   T   L+  + +E++  I+     +  ++
Sbjct: 83  DRCRTVFLGNIAHELRTPLSGIRAYSEILL--TYDDLDVPSQREFLKIINDDSVRMTMIV 140

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL+  +IEAG  +L+ + +   +++ ECI  ++  A  K + +   I     S+ AD+
Sbjct: 141 NDILNSLKIEAGNLKLALNKVRSSELIEECIKAMRPMAVAKGLTLESSITSDAISINADK 200

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV++NL++NA+K+T  GG V V V    GR     + D+G GI   E   +   F 
Sbjct: 201 NQVMQVLINLVNNAIKYTQQGG-VTVGVAL-KGRFAEFFVIDSGEGIFPAEQEKIFDEFY 258

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           +    + +   G GLGL I + I+  H G   + S + +G      +P     +  P D 
Sbjct: 259 RVLDNVSNRPPGTGLGLSICKKIVEVHEGTIGVESSVGKGSTFRFTIPIFLNEDQFPIDE 318

Query: 486 H 486
            
Sbjct: 319 P 319


>gi|301023116|ref|ZP_07186923.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1]
 gi|300397237|gb|EFJ80775.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1]
          Length = 904

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|163938573|ref|YP_001643457.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860770|gb|ABY41829.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 456

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +S FLAS++HELRTPL  + G++++   E   P   E    Y+  I     ++ NL+ +
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIASKENTPP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +  L+++E   + +    + L   +      + +   EK I++      SL  V  DE+ 
Sbjct: 291 LFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLL-VKLDEQR 349

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
             QV+ N+L+NA + +     ++++V     +   I+I+D G GI   ++P +   F + 
Sbjct: 350 FEQVMANILNNAYRHSKEHSHINISVT-EEHKRISITIEDEGEGIPPEDLPHIFDRFYRV 408

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             A   A  G GLGL I + I+  HGG   + S++  G      LP
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454


>gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 765

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/464 (21%), Positives = 172/464 (37%), Gaps = 32/464 (6%)

Query: 13  GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72
           G  +  T     L   +    D   +  H      ++ +    V              + 
Sbjct: 183 GARVRATALDRVLRSGASATVDGHWLMPHDGQRVPIAEVASPLVDAAGG-----MTGAVL 237

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +  +       A   + ++++ +             +          W        G  
Sbjct: 238 IVRDVSVDRERVAASQMLRRLVEASPDAIVGVGANRRIT--------SWNPAACRMFGYD 289

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
               L       + + ++   L    LP +V     P+              L  +L+  
Sbjct: 290 EQAAL----GRDVAMLIAPRWLRRHPLPASVPGVREPIENVDVLCMRQDGSRLRATLSAS 345

Query: 193 LATAL-SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                      ++  L  +  +    +     L          + + R++A+  N  K  
Sbjct: 346 PVLDDRDACVALSLTLRDTGGQRRRERRAHRSLRG--------ARDARRQADTSNRLKDE 397

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            LA++SHELRTPLN I G+ EV+     G L     ++ I  I RS + L  ++ +ILD 
Sbjct: 398 LLATVSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLARMVGDILDA 453

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S +  G+  L    + L+ IV +    L   AQ   IE+  +       V  D + +RQ+
Sbjct: 454 SSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQADGIELAVECALDTCIVSGDGERLRQM 513

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NLLSNA KFT  GGRV V++  T  +   +++ D G GI+   +P V  +F +   A 
Sbjct: 514 LSNLLSNAFKFTPRGGRVTVSLERTGSQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAP 572

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            S+ +G+GLGL I + I+  HGG+    S     G      LP 
Sbjct: 573 ASSRRGLGLGLSIVRHIVELHGGKVGAASAGKNRGTTFAVTLPA 616


>gi|121608266|ref|YP_996073.1| PAS/PAC sensor signal transduction histidine kinase
           [Verminephrobacter eiseniae EF01-2]
 gi|121552906|gb|ABM57055.1| multi-sensor signal transduction histidine kinase
           [Verminephrobacter eiseniae EF01-2]
          Length = 468

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 10/249 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    +  F+A++SHE+RTPL  ++GF E ++     PL+ E    Y+G + +    
Sbjct: 221 ALEQAEAMRRDFVANVSHEIRTPLTVLIGFVETLQTL---PLSAEERSRYLGLMAQQALR 277

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM---LQLRAQEKNIEIFQKIDPS 357
           + N++ ++L LSR+E            +  +++ C      L     +    + +   P 
Sbjct: 278 MQNVVQDLLTLSRLEGSPPPGMAEWTPVQSLLQRCEDEGRALSALLTQHQPHLLRFPAPE 337

Query: 358 LSSVWAD----EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +     D       ++  + NL++NAV++T  GG + V            S+ D GPGIA
Sbjct: 338 VLRAQGDIAGVPAELQSALSNLINNAVRYTPAGGCISVQWKREPDGRAVFSVHDTGPGIA 397

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              IP +   F +   +      G GLGL I + ++  HG    I S L +G       P
Sbjct: 398 PEHIPRLTERFYRVDRSRSRETGGTGLGLAIVKHVLQRHGATLDINSTLGKGSAFSVTFP 457

Query: 474 NTRVLNFIP 482
             R+  F P
Sbjct: 458 ANRLRGFAP 466


>gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1214

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 10/254 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
              ++E    ++   + +K+AE  + AKSRFLA+MSHE+R+PLNA+LG  E++    +  
Sbjct: 503 LHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL-- 560

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+  + Y      +G  LL+ IN+ILD S+IEAG+  L   + S   +V + + +L  
Sbjct: 561 --NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLENMSFSPAKMVAQVMQILAP 618

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EK + +   I+ ++   V  D + +RQV+ NL+ NA+KF+  GG V V +       
Sbjct: 619 KANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIKFS-SGGCVSVEMWIPDSHH 677

Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           Q +     + D G GI+      +   F Q      +  +G GLGL I   ++   GG+ 
Sbjct: 678 QEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTGLGLAICSELIIMMGGEI 737

Query: 457 LIRSKLREGVEVIA 470
            + S+L  G     
Sbjct: 738 ELSSRLGHGSCFRF 751


>gi|160898519|ref|YP_001564101.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160364103|gb|ABX35716.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 774

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 161/460 (35%), Gaps = 37/460 (8%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83
           G   P                L + +                   +    +WS+     +
Sbjct: 79  GQPGPLHSLMQAGRALPESLLLRKSANNAGWLADRWEPARQLVRAHVWLLLWSVALGLAF 138

Query: 84  AANLSLG-KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142
            A L+   +++                   G            +        +   +  +
Sbjct: 139 MAVLAWCVRRLRRRVPASAWSRAGACACAAGDALCRKLLDTAPVGLALVRCSDRSLLLSN 198

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
                 +   A S F    A      P  +AL    ++ +     + AG           
Sbjct: 199 GLARQWVCSDA-SWFEHALAGGTQQGPRELALGDGRLVEVSTTPTTHAGEPVVFCLVSDV 257

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
                                    L   ++   + + RAE  + AK++FLA+MSHE+RT
Sbjct: 258 TA-----------------------LRQVQAALVDAKLRAESASQAKTQFLATMSHEIRT 294

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  ILG  E++ L  +          Y+G + ++   LL ++N+ LDLS IEAGR +L 
Sbjct: 295 PLFGILGTLELLALSRV----PSEQTRYLGAMQQASASLLRIVNDSLDLSAIEAGRLQLE 350

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVK 381
             A S  +++      L  RA++K ++++   D  +   +  D   +RQ++ NL+ NA+K
Sbjct: 351 AHAFSATELLDSVAAGLLSRAEQKGLQLYAVSDVKTPPLLVGDALRLRQILDNLVGNAIK 410

Query: 382 FTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   G V + +        G      ++D G GI   + P +   + +   A +   QG
Sbjct: 411 FTFS-GHVAIRLQVMGESEEGTDLRFQVQDTGIGIDPEQQPFLFDPYFRAHAATQQQVQG 469

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475
            GLGL I   +    GG+    S+   G        LP  
Sbjct: 470 AGLGLSICLRLSQEMGGRLTAASQPGLGTCVSFELRLPRE 509


>gi|42781128|ref|NP_978375.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737049|gb|AAS40983.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 231 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 288

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 289 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--IELI 346

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++Q+ LN++ NA+K++   G+V++      G+   I +KD G GIA+  +P +  
Sbjct: 347 GDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQ-AVIKVKDEGIGIAKEHLPYIEQ 405

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 406 SFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 453


>gi|16804620|ref|NP_466105.1| hypothetical protein lmo2582 [Listeria monocytogenes EGD-e]
 gi|16412070|emb|CAD00660.1| lmo2582 [Listeria monocytogenes EGD-e]
          Length = 459

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRL-YEDTTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|88797787|ref|ZP_01113375.1| GAF sensor hybrid histidine kinase [Reinekea sp. MED297]
 gi|88779464|gb|EAR10651.1| GAF sensor hybrid histidine kinase [Reinekea sp. MED297]
          Length = 579

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 177/464 (38%), Gaps = 35/464 (7%)

Query: 19  TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI 78
           T   L  E P   +   E  +L V+ +        L   L+A +        I   W +I
Sbjct: 2   TLIELDRESPHARNIQWERQSLFVDEVQPRMVASGLGAALLALLMMSNLSIAILLTWLVI 61

Query: 79  TLAVYAANLSLGKKVMNSDIKIG------EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            L+V   +  L  +      +         +  W    L+  +  G  W++L        
Sbjct: 62  CLSVSVGSYFLLTRQRQVLGRDYQQDRSYRLGYWHRINLLIALTWGALWSVLPWF-FLDG 120

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
             +         +++  S+ +++    P    L   PV  +L      +   L + +  +
Sbjct: 121 ASQSQIFTLLLFVMVMSSMPSVTMGTYPDIYLLFIVPVFSSLFILLWPTSTPLLLIVVAL 180

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
              +L+ F+ +T    KS +  +  + E                  +++A E + AKSRF
Sbjct: 181 SGVSLAVFSLMT---HKSQMNSIRLRLEH--------------QLAQQQAHEADQAKSRF 223

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+ SH+LR PL A   + + +          E+  E +     S +    L+ ++LD+S
Sbjct: 224 LAAASHDLRQPLQAANLYLQTLSSRA------ESQDELLLKAKHSVESANELLTKLLDMS 277

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
            ++A    +S     L  ++         +A  K +++     P    V  D   + Q++
Sbjct: 278 LLDANVVTVSIQPCQLQSMLDAIESEFAEQAMSKGLKLRI--APMPVEVSTDPVLLMQIL 335

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NL+ NAVK+T   G V V+V     +   + I+D GPGI   E   V   F + +    
Sbjct: 336 RNLIGNAVKYTRA-GSVDVSVELRETQ-ATLRIEDTGPGIPADEQSHVFKEFYRAAHGQS 393

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           S E G+GLGL I + +         + S+   G      LP +R
Sbjct: 394 S-EPGMGLGLSIVKRLCDQLNVPLTLVSEPGHGTTFSLTLPVSR 436


>gi|255530108|ref|YP_003090480.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343092|gb|ACU02418.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 341

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 147/340 (43%), Gaps = 10/340 (2%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFF-PVVVALSTQAIMSMHVLDISLAGMLATALS 198
            K + L++  + +   +  L    F   +  ++V+     I S  V    L   + + + 
Sbjct: 1   MKLSVLVLIAAFAVGLSIGLVNFYFQQSWYFMLVSFVVTFITSFIVFYYLLEKYIYSKIV 60

Query: 199 FFTYITY--HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFL 253
               + +   L K     L      D +    +  K  +   ++  E   ++   +  FL
Sbjct: 61  LIYKMIHNLKLGKDLKDALGEYVSSDPINDVEQEVKEWAGAKKREIEVLKKQEQFRREFL 120

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           +++SHE +TPL AI G+ E ++       + E   +++    ++ + L  LI ++  +S+
Sbjct: 121 SNVSHEFKTPLFAIQGYIETLQDCL--TEDPEMAAKFLDKAEKNVERLSYLITDLDSISK 178

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           +E G   ++      + + RE +  L+  A+++NI +  K   +  + V AD + +RQV+
Sbjct: 179 LETGEIPINYEKFDFVPLAREVMDGLEDTARKRNITLSFKDKYTHPAFVRADREKIRQVL 238

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NL+ N++K+    G   + +     +   I + D+G GI E  +  +   F +      
Sbjct: 239 INLIHNSLKYGKEYGSTAIKIFELHDQYL-IEVTDDGIGIDEKHLSRLFERFYRIDSHRS 297

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E G GLGL I + I+  H     +RS L+ G      L
Sbjct: 298 REEGGTGLGLAIVKHILEAHEQIISVRSTLQIGTTFAFTL 337


>gi|90962156|ref|YP_536072.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90821350|gb|ABD99989.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
          Length = 461

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            DL A+ E+ K   D               F+ ++SH+++TP+ AI GFSE +    +  
Sbjct: 224 RDLTAQKEMEKKQLD---------------FVGNLSHKIKTPITAITGFSETLLDGALD- 267

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRI-EAGRYELSESAISLIDIVRECIIMLQ 340
            + E  K++I  IH     L NL+++++ +SR+ E G   L+   +++  +V++ + +  
Sbjct: 268 -DKEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFS 324

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              ++K + +  +ID  L S++ D+  ++ +I NL+ NA+++    G + + V       
Sbjct: 325 HEIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNE 383

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I D G GI++ +   +   F +   +      G GLGL + +  +    G+  ++S
Sbjct: 384 WVFVISDTGIGISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKS 443

Query: 461 KLREGVEVIAILPN 474
           ++ +G     ILP 
Sbjct: 444 QINKGTTFYVILPR 457


>gi|307727671|ref|YP_003910884.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
 gi|307588196|gb|ADN61593.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
          Length = 596

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/455 (20%), Positives = 172/455 (37%), Gaps = 29/455 (6%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS---LIT 79
               P +   D +++  L+ +             +LVA         P+F          
Sbjct: 1   MRAVPIQHAIDEDLVRVLYAQDPIAFFTHWFSIAVLVALYWPAIPSPPLFIACFGFYAAA 60

Query: 80  LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
                A     ++       +     W     V  + +     L         +P+    
Sbjct: 61  NCAGLALWICNRRY----PHLLSPRGWINLHAVRGVLLYSAPGLAIWFAFQ--SPQSDLP 114

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS 198
                +L+ L+     +       F +  P ++       +         LA +LA    
Sbjct: 115 LLHTVMLVTLAAGVFMSNGFDLLNFATAIPFLLFPSIVLHVGMHTFDRTILAIVLAFFFC 174

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
                     K   +++  + ++  L   L V        +  AEE +LAK+RF A+ SH
Sbjct: 175 AINVYALSYRKLFQQVVQARVDQQYLAESLAVQ-------KHVAEEASLAKTRFFAAASH 227

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           +LR PL+AI   +  +      P  +    E+   I  + + L  L N++LDL+R+E+G 
Sbjct: 228 DLRQPLHAIGLLAASLNDPAATPAQHAKTAEH---IVHNVEALNQLFNQVLDLARLESGV 284

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            ++      L ++        + +A  K + +     P+   V+ D   + +V+ NLLSN
Sbjct: 285 TQVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTSMVVYDDPVLLERVLSNLLSN 342

Query: 379 AVKFTAIGGRVHV---TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           AV++T   G + +     G ++G   +I ++D+G GIA  E   +   F Q +   + A 
Sbjct: 343 AVRYTEE-GAIWLGFRRAGRSAGG--FIEVRDSGIGIAPEEHERIFEEFYQVANPHRDAR 399

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           QG GLGLP  + ++   GG+  +RS    G     
Sbjct: 400 QGHGLGLPTVKRLVGMLGGELQLRSAPGRGSVFRF 434


>gi|291612803|ref|YP_003522960.1| PAS/PAC sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291582915|gb|ADE10573.1| PAS/PAC sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 440

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 6/237 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL  + GF E ++   M  L N+  +  +  +      + 
Sbjct: 200 ERIETMRRDFVANVSHELRTPLTVVNGFVETMQD--MPNLENDMARRALQLMGNQTSRMK 257

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-EKNIEIFQKIDPSLSSV 361
           +L++++L LSR+E  +  LSE  I +  ++       +  +  +  I +  + +     +
Sbjct: 258 SLVDDLLTLSRLENEQNALSEEDIDVQKLLHILHEEGRSLSNGQHQIRLEIESEAG---I 314

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
                 +     NL++NAV++T  GG + +            S+KD+G GI    I  + 
Sbjct: 315 CGSASELHSAFGNLVTNAVRYTPAGGDIAIRWSEQPDGCMVFSVKDSGIGIEPQHISRLT 374

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             F +   +      G GLGL I + I+  H  Q  I S+  +G     + P  R L
Sbjct: 375 ERFYRVDRSRSRETGGTGLGLAIVKHIVMRHQAQLNIVSEEGKGSTFSIVFPARRRL 431


>gi|261408700|ref|YP_003244941.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261285163|gb|ACX67134.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 605

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 25/246 (10%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TPL A+ GF+E +     G  + +T + ++  I+   +
Sbjct: 363 RRLE---RMRSEFVANVSHELKTPLAAVKGFAETLLGG--GVTDEKTSRSFLQIIYDESE 417

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI +IL+LS+IE+ R ++  S I L         M++  A++K I +   +   L 
Sbjct: 418 RLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMMRTVAEKKRIGLELDVPEEL- 476

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAE 414
            +  DE  +RQ+ +NLLSNA+ +T  GGRV +T        ++       +KD+G GI +
Sbjct: 477 FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHNDGSADDFVEFVVKDSGIGIPK 536

Query: 415 GEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            ++P +   F +   A                    I + ++  H G   + S+L  G  
Sbjct: 537 KDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGTIKVESELGIGSS 589

Query: 468 VIAILP 473
            I  LP
Sbjct: 590 FIIELP 595


>gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 770

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 7/264 (2%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           + +    A++   +      +   D  R RA+  N  K   LA++SHELRTPLN I G+ 
Sbjct: 359 LTLRETGAQRRRDLRTQRSLQGARD-ARDRADTSNRLKDELLATVSHELRTPLNVIYGWI 417

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           EV+       L     ++ I  I RS + L  ++ +ILD S +  G+  +    + ++ +
Sbjct: 418 EVLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRL 473

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             + +   Q  A    I +  +   S   V  D + +RQ++ NL+SNA+KFT  GG V V
Sbjct: 474 FSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTV 533

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           T+         + + D G GI    IP V   F +   +  S  +G+GLGL I + I   
Sbjct: 534 TLSRDDAHAVLV-VADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGL 592

Query: 452 HGGQFLIRSK-LREGVEVIAILPN 474
           HGGQ  + S+    G      LP 
Sbjct: 593 HGGQVRVESEGRNRGATFTVTLPA 616


>gi|295102537|emb|CBL00082.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           L2-6]
          Length = 1048

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 10/274 (3%)

Query: 224 LIAELEVA-KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +    E A      E  + A+  + AK+ F+  MSH++RTP+N ILG  +++        
Sbjct: 645 IFHAQEQAENQRLQEAFEEADSASRAKTAFMNRMSHDIRTPINGILGMLDILRSNRDDAR 704

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             ++    +  I  S  HLL L+N++LD+S++EAG+  + +    +  ++ +   +++ +
Sbjct: 705 KVDS---CLDKIDLSAHHLLALVNDVLDMSKLEAGQMVMEQEPFDIEVLMHDVSSLVEAQ 761

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            ++  +   +  +    +++      +RQ+++NL SNA+K+   GG +       S  G 
Sbjct: 762 IEKGGLTHRRHRENVQHTALVGSSLKLRQIMVNLFSNAIKYNKPGGSIDTYARELSCDGT 821

Query: 402 ----YISIKDNGPGIAEGEIP-TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                  I D G G++   +   +   F Q S   ++  +G GLG+ I + +++  GG  
Sbjct: 822 TVWYEFRITDTGIGMSRDFVENQLFKPFTQESADARTQYRGTGLGMSIVKELVSQMGGSI 881

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
              S+  EG      LP     N   +   + T 
Sbjct: 882 SAESQPGEGTAFTFQLPFLLDKNAAAKPQPKPTD 915


>gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1158

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 3/280 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                      L ++N ++       D     L  A+   +E  +     +  KS FLA+
Sbjct: 434 YQVSLENQQAELEQTNEQLSEVALSLDHKNVALSQAQIQLEERAEELSRASRYKSEFLAN 493

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPLN+ L  S+++     G L+ E  K +   I+ +G  LLNLIN+ILD+S++E
Sbjct: 494 MSHELRTPLNSSLILSKLLSDNQKGNLDAEQVK-FAQSIYSAGNDLLNLINDILDISKVE 552

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           AG+ +LS   I L D+           A +KN+     ++P    ++ +D +   Q++ N
Sbjct: 553 AGKLQLSPETILLGDLAASLNSTFGPLAGQKNLAFEVVVEPGTPATLVSDRQRAEQILKN 612

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           LLSNA+KFT   GRV ++V    G     +++D+G GI + +   +  +F Q        
Sbjct: 613 LLSNAIKFTEA-GRVSLSVSPQPGGMIGFAVQDSGIGIRQEQQQIIFEAFRQADGTTSRR 671

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             G GLGL I++ + A  GG   ++S++  G     +LP 
Sbjct: 672 YGGTGLGLSISRDLTALLGGSITVQSQVGRGSVFTLLLPA 711


>gi|158521942|ref|YP_001529812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158510768|gb|ABW67735.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 591

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 5/236 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F A++SHEL+TPL +I GF+E +  E    L+N      +  I  + + 
Sbjct: 357 RMRQLETMRKDFAANVSHELKTPLTSIQGFTETLLAEP-SLLDNAHVVRCLEIIANNTKR 415

Query: 301 LLNLINEILDLSRIEA--GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           L  +I+++L LS IE    + + +     L D++     + +     K I++       L
Sbjct: 416 LTTIIDDLLKLSEIEHADRQKDFNFQEAPLADVINSAAAICRPDLDSKQIKLESDCPADL 475

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
           + +  D   +   ++NL+ NAVK++     V ++     GR  ++S+ D+G GIAE  IP
Sbjct: 476 A-LPIDPFLLELALVNLVENAVKYSPNNSEVGISAE-DKGREVHVSVIDHGTGIAEAHIP 533

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   F +   A      G GLGL I + +   HGG+  ++S   +G     I P 
Sbjct: 534 RIFERFYRVDKARSRELGGTGLGLAIVKHVAQIHGGRIEVQSTPGKGSAFTLIFPR 589


>gi|228477483|ref|ZP_04062119.1| sensor protein YycG [Streptococcus salivarius SK126]
 gi|228250918|gb|EEK10106.1| sensor protein YycG [Streptococcus salivarius SK126]
          Length = 446

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+ E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDD---GALDEEIAPNFIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L     +    +   +        Q     K  EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNTGKTYEIIRDYPVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV+ N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVVDNILNNAIKYSPDGGKITVSMKTTDSQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|52425785|ref|YP_088922.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307837|gb|AAU38337.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 614

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 7/329 (2%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L   + ++   +   +    +++  +   SL   +   +    ++ Y       ++  
Sbjct: 23  FSLLGFILIAILALCTHIFLSLMITGQIHWESLLYSVVFGVISAPFVIYFFALLVERLEL 82

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            +    +L+ EL+          +R  +    K+  +A++SHELRTPLN I+G S ++  
Sbjct: 83  SRQNLTNLVGELQQEIRERTTAEQRLAQAIRDKTTLMATISHELRTPLNGIVGLSRILLD 142

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +     E    Y+  I+ S   L ++ N+I+DL +++  R EL +       ++ +  
Sbjct: 143 SKL----TEEQYNYLKTINVSAVSLGHIFNDIIDLEKLDGSRIELYKKETDFHALITDVY 198

Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            + QL A++K+++   ++D  L   +  D   + QV+ NL+SNAVKFT   G V + +  
Sbjct: 199 NVAQLMAEQKHLKFILQVDKDLPNWLLLDYTRLSQVLWNLISNAVKFTDK-GTVTLKISR 257

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGG 454
            S      +I D GPGI E E+  + T + Q  +   K    G G+GL I++SI     G
Sbjct: 258 LSENRYAFAISDTGPGIPENELNKIFTMYYQVKANFNKHKAAGSGIGLAISKSIARLMNG 317

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             ++ S++ +G   I  +    V   + +
Sbjct: 318 DLVVESEIGKGSTFILTIQADEVSKPVSD 346


>gi|224500462|ref|ZP_03668811.1| hypothetical protein LmonF1_12654 [Listeria monocytogenes Finland
           1988]
          Length = 459

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILFVLISGRYIVNPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT   G + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHL-YEEGTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ED1a]
 gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli ED1a]
          Length = 778

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG  ++ S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIMVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|254421287|ref|ZP_05035005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196188776|gb|EDX83740.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 712

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/353 (23%), Positives = 157/353 (44%), Gaps = 33/353 (9%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
            + A+   ++ + + L    + VAL     +S+ +  ++        LS       +   
Sbjct: 336 GLRAIRRVLIVWNIGLLIASISVALIVSNSLSLPIEKLTRYTQNVKDLSQLQPAPRNSHI 395

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
             +  L    E+  ++  LE   +   +  + A+  N  K+ FLA+ SHELRTPLN I+G
Sbjct: 396 WELDYLGTVIER--MLRGLEKNSNDLRKAWQDAQTANQLKNEFLANTSHELRTPLNGIIG 453

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
              +++       + E  +E++   +++  HLL++I +IL +++IEAG  ++S + + L 
Sbjct: 454 SIGILKDGLCD--SKEEEREFLDQANKAAMHLLSVIEDILSIAKIEAGTLKMSIAPVDLR 511

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            ++ + + M   +A++K + I +    +   V  D    +QV+LN++SNA+KFT   G +
Sbjct: 512 SVLHDVLEMQVFQAKQKGLLIVRPELLAPLMVEVDHFRFKQVLLNVISNAIKFTDK-GTI 570

Query: 390 HVTVGWTSGR---------------------------GQYISIKDNGPGIAEGEIPTVLT 422
            + +                                    I IKD+G GI    +P +  
Sbjct: 571 DIQITTDESTQTAPKNCDHLSHRTLVSNAELCMPPKPWVKIMIKDSGIGIDPQHLPKLFK 630

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            F     +   + +G GLGL I+Q+ M    G   + S+ +  G  V  ++P 
Sbjct: 631 PFVMVDGSHTRSYEGTGLGLAISQNFMRLMQGDITLSSEGIGRGTTVTIVIPR 683


>gi|107026341|ref|YP_623852.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116692471|ref|YP_838004.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105895715|gb|ABF78879.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116650471|gb|ABK11111.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 666

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 15/332 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYI 203
           ++  ++   L    +P +      PV                 + A   +         +
Sbjct: 186 IVTMIAPRWLRRHAVPASFADLRAPVGPLDVLCVRPDGGRFRATFAASPIIDGQGHCAGL 245

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  L ++       + E+  L      +   + + R +A+  N  K   LA++SHELRTP
Sbjct: 246 SLTLREAGE---RRRNERHHL-----RSLRGARDARVQADASNRLKDELLATVSHELRTP 297

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I G+ EV+             ++ +  I RS + L +++ ++LD S +  GR  L  
Sbjct: 298 LNVIYGWVEVLRNADGQGFA----QQAVDAIDRSARSLSHMVADLLDASSLATGRLRLER 353

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + L+ IVR+    L   AQ   + +  +       + AD + +RQ++ NLLSNA+KFT
Sbjct: 354 VPVDLVRIVRDAARELDATAQANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFT 413

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GGR++V++   +G    +S+ D G GIA   +P +  +F +   A  S ++G+GLGL 
Sbjct: 414 PPGGRINVSLTR-AGERVRLSVSDTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLS 472

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           I ++I   HGG+ +  S     G+ V   LP 
Sbjct: 473 IVRNIAQLHGGEVIATSAGAGRGMTVTVTLPA 504


>gi|302024080|ref|ZP_07249291.1| sensor histidine kinase [Streptococcus suis 05HAS68]
          Length = 449

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++E   +   + V   ++++ ++        +  F++++SHELRTPL ++  + E ++ 
Sbjct: 182 IRSESGLISGLVVVLHDMTEQAKEE-----RERRLFVSNVSHELRTPLTSVKSYLEALDE 236

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +      +   ++         ++ +I ++L LSRI+    ++    I+    V   +
Sbjct: 237 GALTESVAPS---FVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFIL 293

Query: 337 IMLQLRAQEKN---IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                     +     I +    S   V  D   M QV+ N+L+NA+K++  GG +  ++
Sbjct: 294 NRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSM 353

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T  +   +S+ D G GI + ++P +   F +   A   A+ G GLGL IA+ I+  H 
Sbjct: 354 KTTDSQ-LIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
           G    +S+   G     +LP ++ +
Sbjct: 413 GFIWAKSEYGHGSTFTIVLPYSKDI 437


>gi|218289691|ref|ZP_03493899.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240148|gb|EED07332.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TP+ AI GF+E +     G ++ E  ++++  I+    
Sbjct: 198 RRLE---RMRSDFVANVSHELKTPIAAIRGFAETLLD---GDVDEEAREKFLRTIYEESL 251

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            + NL++++L+LS++EA    +   A+ L +++   +  ++  A EK I I    +  L 
Sbjct: 252 RMGNLVSDLLELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL- 310

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            VWA+   + QV LNLL+NA+ ++    RV VT      R   + +KDNG GI +  +P 
Sbjct: 311 HVWAEPDLLLQVFLNLLTNAIHYSPPKSRVCVTWDVLVDR-VKVHVKDNGIGIPKESLPR 369

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           V   F +       A  G GLGL I + I+   GG+  + S+  +G +    L
Sbjct: 370 VFERFYRVHKDRSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422


>gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 922

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 15/238 (6%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N  KS FLA++SHE RTPLN ILG++++++            KE I  I  SG +LL L+
Sbjct: 368 NQVKSTFLANISHEFRTPLNCILGYTQLLQD---DNTLTSRQKEDISVIQHSGNYLLKLV 424

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364
           N+IL+LS++E G  EL  +   L   + + + M Q+ A++K I +  +   +L +V  AD
Sbjct: 425 NDILELSKLEKGNIELHPNDFRLGSFLHDIVKMFQISAEQKGISLIFQTLSNLPTVIHAD 484

Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR---------GQYISIKDNGPGIAE 414
           EK +RQ++++LLSNA+KFT  GG    V       +           Y  I D G GI+ 
Sbjct: 485 EKRLRQILIHLLSNAIKFTEQGGVTFQVKSEKLPAQSEVSNLPPFKVYFQIADTGIGIST 544

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  V   F Q S       +G G+GLPI + ++   GG+ L  S   +G +    L
Sbjct: 545 EALEKVFLPFEQASEWRH-KSEGTGVGLPITKQLIEMMGGELLFESHPGKGSQFWFEL 601


>gi|320103763|ref|YP_004179354.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
 gi|319751045|gb|ADV62805.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
          Length = 460

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 165/438 (37%), Gaps = 23/438 (5%)

Query: 62  IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM-----------NSDIKIGEVYVWRIWL 110
           +          P+W+L+ L++     +   +             N  I        R   
Sbjct: 1   MSWETLLAWSVPLWALVCLSLALRLRAAAIQAEELARGLSALDQNRPIWPVRSTPHRRPA 60

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
                      + +  +E        +       +L+  +   L              P 
Sbjct: 61  ECFNAIAPALRSRIAALESDRQQFRAVLESMIEGVLVVDADRRLRYANASAENLFGLGPR 120

Query: 171 VVALSTQAIMS----MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
            V      ++        ++ +LAG  A            + + N KIL+        ++
Sbjct: 121 AVGRLIHELIRSPSIHRAVEATLAGQSAHRDEVSLVGGESVPRLNAKILAV---NGTPLS 177

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
               A  L              +  F+A++SHEL+TPL +I  +++ +    +   + E 
Sbjct: 178 GPPRAALLVFHNITELRRLERMRQDFVANVSHELKTPLASIRAYADSLLDWAL--EDPEI 235

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            + ++  I    + L  LI+++L L+RIE+G+  ++   ++L  +V   +   + RAQ +
Sbjct: 236 TRRFVSQIDEQAERLDVLIHDLLSLARIESGQDLITFRPLALAPLVERRVESFRDRAQSR 295

Query: 347 NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSG-RGQYI 403
           N+ +    + P   ++ ADE+ +RQ++ NL+ NA+K+++     V V            I
Sbjct: 296 NVSLSFVTELPPQFTILADEEALRQILDNLIDNAIKYSSDVDPWVKVVCRGDGEAGMVAI 355

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + DNG GIA  E   +   F +   A      G GLGL I + ++    G+  ++S++ 
Sbjct: 356 DVIDNGLGIASEEQTRIFERFYRVDKARSRERGGTGLGLAIVKHLVQALRGEIELQSRVG 415

Query: 464 EGVEVIAILPNTRVLNFI 481
            G      LP  R  N  
Sbjct: 416 AGSRFTVRLPRQRPANPS 433


>gi|302391128|ref|YP_003826948.1| integral membrane sensor signal transduction histidine kinase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203205|gb|ADL11883.1| integral membrane sensor signal transduction histidine kinase
           [Acetohalobium arabaticum DSM 5501]
          Length = 608

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 8/259 (3%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI---ELETMGPLNNETYKEYIG 292
           +  +++ E  N  + +F A++SHEL+TPLN I    +++   +         +   EY G
Sbjct: 331 ELLKEKLE-YNRLQVQFFANLSHELKTPLNLIFSTLQLLDLYQKNNFESKTYQKLSEYTG 389

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I ++   LL L+N ++D+++I +  + L+    +++ IVRE    +    + ++  +  
Sbjct: 390 TIKQNSYRLLRLVNNLVDITKINSNSFNLNLKNDNIVKIVREITYSVNNYIENEDRILEF 449

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPG 411
             +     +  D   + ++ILNLLSNA+KFT  G ++ V V  T  +    IS+KD G G
Sbjct: 450 NSNIEKKIIACDPFSIERIILNLLSNAIKFTEPGDKISVNVSETDEQEMILISVKDTGIG 509

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   FGQ   +     +G G+GL I + ++  H G+  + S   E  E    
Sbjct: 510 IPNKKQNIIFERFGQVDKSFTRNNEGSGIGLAIVKLLVELHNGEITVNSTYGEFTEFNIK 569

Query: 472 LPNTRVLNFIPEDNHESTQ 490
           LP  R+     ++  E +Q
Sbjct: 570 LPIRRLQE---QEESELSQ 585


>gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
 gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
          Length = 923

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 25/310 (8%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                  + + +      +     I +  +LA            LF         +    
Sbjct: 333 FPAVIRSLTITIVPPFYATWWAYIIYICAILAILYILIREHRRRLFLKTSLEFEMR---- 388

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
                           ++  EE N +K RF  ++SHE+RTP+  I+   +++     G L
Sbjct: 389 ---------------EKQYIEEMNQSKLRFFTNISHEIRTPITLIISQVDLLLNS--GKL 431

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           +   Y + +  IH++  +L +LI+E+LD  + E G  +L  S   L D+++E  ++ +  
Sbjct: 432 STYAYSKLLN-IHKNAGNLKSLISELLDFRKQEQGLLKLKISQFDLCDLLQEHFVLFKEL 490

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           +  +NI     ++     +W D   +++VI NLLSNA K+T+ GG + +           
Sbjct: 491 SANRNISFSLHMNVQHCMIWGDRMQLQKVINNLLSNAFKYTSDGGTIVLGFT-EKDMVCR 549

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            S+ DNG GI+E +   +   F Q          G G+GL + Q I+  H G+  ++S+L
Sbjct: 550 FSVTDNGAGISEEDYQKIFERFYQVEN--IGLYGGTGIGLALTQGIVKAHKGEINVKSQL 607

Query: 463 REGVEVIAIL 472
            +G      L
Sbjct: 608 GKGSCFQVTL 617


>gi|154250849|ref|YP_001411673.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154799|gb|ABS62016.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 445

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/453 (20%), Positives = 169/453 (37%), Gaps = 32/453 (7%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88
           SK D  R+ +   V         +    ++   +  +   +PI    S + LA  A +  
Sbjct: 8   SKADISRKRLRDLVSRWTGTRTFIVSAAIVFLVLVLFDGVHPIAAFVSFLFLAGVAVSRW 67

Query: 89  LGKKVMN-----SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
           +           SD     +  +        +   L   L+ L      T   L    +A
Sbjct: 68  IAVGETTPIRIGSDTGDSRLPAFASGGTALALLNRLPDPLIVL----DGTGRVLFANVAA 123

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             L+  + +      +  +  L      +        +  +       +     +  + I
Sbjct: 124 EALVGTASTGRHVATVLRSAPLVTA---IDGVIADGKARSIEYTVPVPVQRNYTAMVSVI 180

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                 S     +      D+            E R+   E   A   F+A  SHEL+TP
Sbjct: 181 ADTGTPSPSSSKTIFMLLRDIT-----------EARRI--EAMRA--DFVAFASHELKTP 225

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L ++ GF + +        + E   +++G +      + +LI+++L LSRIE   +    
Sbjct: 226 LASLSGFIDTLRGHA--KDDPEARDKFLGIMSDQATRMRHLIDDLLSLSRIELREHVRPS 283

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            A+ L  +V +    L   ++   +EI       L  V  D + + QVI NL  NA+++ 
Sbjct: 284 DAVDLFSVVNDIADGLTPLSERYEVEIGIHAPAGLPLVRGDREELGQVIQNLAENALRYG 343

Query: 384 AIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G R+ +++      G     ++++D GPGIA+  IP +   F +   A   A+ G GL
Sbjct: 344 RTGKRIEISLAPDQKGGRPYVRLTVRDFGPGIAKEHIPRLTERFYRVDPAASRAKGGTGL 403

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I + I+  H G   I S+L +G     +LP
Sbjct: 404 GLAIVKHIVNRHEGTLTIESELGQGSVFSVLLP 436


>gi|228985104|ref|ZP_04145271.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774591|gb|EEM22990.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 444

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I     
Sbjct: 219 EKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETD 276

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+    
Sbjct: 277 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--I 334

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   ++Q+ LN++ NA+K++   G+V++    + G+   I +KD G GIA+  +P 
Sbjct: 335 ELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQ-AVIEVKDEGMGIAKEHLPY 393

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +  SF Q +        G GLGL I + ++  HGG   I SK   G  ++  LP 
Sbjct: 394 IEQSFYQINNHAT----GAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLPL 444


>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 501

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K+ F+  +SHELR PL+AI     VI     G L  E  +E +   H   Q LL+
Sbjct: 261 ELDEMKNEFVQMVSHELRAPLSAIKMQHTVILDGLAGDLT-EKQRELLVRAHAKIQGLLD 319

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LINE+L+++R+EAG  +L +  +SL  ++ + + +LQ +A  + I +     P L  + A
Sbjct: 320 LINELLNVARMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLITPPDLPLIQA 379

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + M +V +NLL NA+ ++  GG V ++   +      + + D G G+   EIP +   
Sbjct: 380 DRRSMEEVFMNLLCNAINYSPNGGNVKISA-VSHSEYLEVLVSDTGVGLEPEEIPKIFDK 438

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +          G GLGL I ++++  H G   + S+   G     +LP
Sbjct: 439 FYRAKHPQTRQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLP 488


>gi|260752410|ref|YP_003225303.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551773|gb|ACV74719.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 421

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 168/439 (38%), Gaps = 29/439 (6%)

Query: 39  TLHVESLFRVSPILPLFVLLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94
               +S  R   ++    + ++ +          + +   W +++L +         K +
Sbjct: 1   MTFPQSRLRKDCVIKFIPVYLSGLSILALFIIAVSHVSVGWPILSLMLIVILWGWWFKNI 60

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           +                      G   T            + +       LL+      +
Sbjct: 61  SEASTPFPESK-----------SGNSLTDPAYPFSQATAADIIIAMDEPALLVNQGQVEV 109

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
           +N      + +      + ++ +   ++ +L   L  M    L+    +          +
Sbjct: 110 ANRAAENLLGMHIEGGDIRMAIRHPAAIRLLTEPLDNMTPVLLAGLGGVNRRWELYAYPL 169

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
                E+  LI   + + +   E           +  F+A+ SHELRTPL  + GF E +
Sbjct: 170 ----NEEQRLILLRDQSTAHLTE---------QVRIDFVANTSHELRTPLATLSGFIETL 216

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           E + +     +T   ++  + R  + + NL+++++ LSRIEAG++ L    + +  +V E
Sbjct: 217 EDDDVIKE-RDTRHHFLSIMAREAKRMQNLVDDLMSLSRIEAGKFSLPHDIVHMSPVVEE 275

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  +Q   Q K  +I  +      S+  D   + Q++ N++ NA+K+    G + V + 
Sbjct: 276 VVSNIQASGQAKAAQITLENHLFSDSLQGDRAELTQLLYNIIGNALKYGRKDGIIKVALD 335

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            T      ++I D G GI    IP +   F +   +   A  G GLGL I + I+ +H G
Sbjct: 336 NTDDHRIKLAIADEGDGIPFHHIPRLTERFYRVDNSRSRALGGTGLGLAIVKQIVEHHRG 395

Query: 455 QFLIRSKLREGVEVIAILP 473
           + LI S   +G  V   LP
Sbjct: 396 ELLIDSLPGKGTTVTVFLP 414


>gi|42522900|ref|NP_968280.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39574096|emb|CAE79273.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 865

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 157/337 (46%), Gaps = 18/337 (5%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
              S F    A++ + I +   + + +       L   + IT    +    +    AE  
Sbjct: 397 FLKSTFGPEAAMTQRPIHAEAFMTVPILLRDEKPLGTISLITTSPGRHFSPLDQSMAE-- 454

Query: 223 DLIAELEVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                      L + +R   RA+E + AK+ FLA++SHE+RTPL A+LGF+E+++     
Sbjct: 455 ---EVGRRLAVLIENSRLYYRAQEASRAKTAFLANVSHEIRTPLGAMLGFAEILKE---D 508

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               E  KE +  + R+GQ LL++++EILD+S++E+ R ++      L D++ + I +L+
Sbjct: 509 ESLREEQKEAVETVLRNGQQLLHIVDEILDISKVESERIQIESIVFDLPDLLHDVIHLLR 568

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WT 396
            RA+EK IE+  ++ P    + +D   +RQ+++N++ NA+KFT   G V +         
Sbjct: 569 GRAEEKGIELRLRLGPLPKKIQSDPTRLRQILINVIGNAIKFTDS-GFVEMEARSHNGKR 627

Query: 397 SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               Q I   + D G GI+  +   +   F Q   +      G GLGL +++ +    GG
Sbjct: 628 RDGRQRIEFLVTDTGIGISSEQRNNLFQPFSQADSSTTRRFGGTGLGLFLSRKLARLLGG 687

Query: 455 QFLI-RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             ++  S    G   +  +    V +    D  +   
Sbjct: 688 DVILNTSSAGIGSSFLISILGREVTDSQIRDLGKKND 724


>gi|167754622|ref|ZP_02426749.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|237733742|ref|ZP_04564223.1| signal transduction protein kinase [Mollicutes bacterium D7]
 gi|167705454|gb|EDS20033.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|229383080|gb|EEO33171.1| signal transduction protein kinase [Coprobacillus sp. D7]
          Length = 405

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    + +F + +SHEL+TP++AI+G  E+++ E  G  N +T+ E++G + +    + N
Sbjct: 180 EIEKMQKQFFSDISHELKTPMSAIIGSVEILQKE--GIKNKDTFNEFMGILLKESYRMQN 237

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +I +IL+LSR+E  +  LS + + +  ++++ + + +  A++K + +  +       +  
Sbjct: 238 IIGDILELSRLEQPQATLSPALVDIDSLIKDTVELFEPLAKDKQLSLVYQTKIKE-ELML 296

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++ ++ NL+SNA+K++   G + +   +       I ++D G GI++  IP +   
Sbjct: 297 DYTTVKTILNNLVSNAIKYSNA-GVISIKCNY-KDDNLIIVVQDEGVGISKDNIPFIFDR 354

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F Q   +      G GLGL I + ++  + G   + S    G      LP
Sbjct: 355 FFQVDRSRSKKL-GTGLGLSIVKKMVELNNGTIDVESTPGIGTTFTVTLP 403


>gi|313904369|ref|ZP_07837746.1| Hpt sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
 gi|313470705|gb|EFR66030.1| Hpt sensor hybrid histidine kinase [Eubacterium cellulosolvens 6]
          Length = 1059

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FL++MSHE+RTP+ AILG  ++I  E + P      +EY  +IH +G  LL+L+N++
Sbjct: 437 KTTFLSNMSHEIRTPITAILGMDDLILREELSP----KVREYAINIHEAGNTLLSLVNDV 492

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S+IEAG+ E          ++ +   M + R   K +    ++DP +   +  D   
Sbjct: 493 LDFSKIEAGKMEPVNEQFDFPALLDDLDNMFRHRINAKGLRFDLQVDPRIPMSLVGDGFR 552

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------GQYISIKDNGPG 411
           ++QV++N+LSNAVK+T   G +         +                  +  IKD G G
Sbjct: 553 LKQVLINILSNAVKYTDT-GEISFRCVLRGEKSMAELAALSEEELPEVVLHFVIKDTGHG 611

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +  SF +  +      QG GLGL I + ++   GG+  ++S    G      
Sbjct: 612 IRREDRERLFESFERLDLKHTRTIQGSGLGLNIVRKLLEMMGGELQLKSSYGVGSIFYFD 671

Query: 472 LPNTRV 477
           +P  R 
Sbjct: 672 IPLKRA 677


>gi|291548406|emb|CBL21514.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 451

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 6/254 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L+  ++       +  K  +E    +  F A++SHEL+TPL +I G++E++     
Sbjct: 197 ELRPLLVRVDEQNRQIRQQVKELKEAEEIRKEFSANVSHELKTPLMSISGYAELMMN--- 253

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +  +  +E+ G I+     L NL+ +I+ LSR++    E+    + L ++  +    L
Sbjct: 254 GMVPADHIREFSGRIYHESIRLSNLVADIIQLSRLDESNSEVPFEEVDLYELAEDVRNNL 313

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A +KNI +          +      + +++ N+  NAV++T   G V + VG   G 
Sbjct: 314 RHPAGKKNIFLELAGSAE--KIKGVRHVLYEMLFNIADNAVRYTEQNGHVRIMVGNRKGH 371

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y  + D+G GI + E   +   F +   +      G GLGL I +     H  Q  + 
Sbjct: 372 PFY-CVADDGIGIPKSEQGRIFERFYRVDKSHSRQTGGTGLGLSIVKHGATLHHAQINVE 430

Query: 460 SKLREGVEVIAILP 473
           S+   G  +  + P
Sbjct: 431 SEQGVGTRMEIVFP 444


>gi|266624238|ref|ZP_06117173.1| PAS domain protein [Clostridium hathewayi DSM 13479]
 gi|288863916|gb|EFC96214.1| PAS domain protein [Clostridium hathewayi DSM 13479]
          Length = 739

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 9/278 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +        +KI+      +    +   ++       + A   N AKS F+A MSH++
Sbjct: 308 VILAESRNGVPIKIILASHNIEKEKEQEAQSQKALFAAYEEARNANEAKSNFMAQMSHDI 367

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+NAI+G + +   +     + E  K+ +  I  S  HLL+LINE+LD+S+IE G+  
Sbjct: 368 RTPMNAIIGMTAIAMGQV---DDRERVKDCLQKISLSSSHLLHLINEVLDMSKIERGQLT 424

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379
           L+E+  SL ++  E   ++   + EK   +    D +    +  D   +RQV++NL++NA
Sbjct: 425 LTEAPFSLKNLFHEIGSIVYNESMEKEQTLNFLTDGTTHDNLLGDAGKIRQVLINLINNA 484

Query: 380 VKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           +K+T  GG + V     +           +++DNG GI+   +  +   F +        
Sbjct: 485 IKYTPHGGTITVASREMTSGIPGVGCFVFTVEDNGIGISRDFMDHIFVPFAREDNCHVRK 544

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            QG GLG+ I+  I+    G   + S+  EG   I  L
Sbjct: 545 VQGTGLGMSISYGIVRAMQGNIRVESREGEGSRFIVTL 582


>gi|260596161|ref|YP_003208732.1| aerobic respiration control sensor protein ArcB [Cronobacter
           turicensis z3032]
 gi|260215338|emb|CBA27320.1| Aerobic respiration control sensor protein arcB [Cronobacter
           turicensis z3032]
          Length = 779

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +    +   ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDL----SAEQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPS 357
             L N+ N+I+D+ +IE  + +L    +     + +   +  L+AQ+K +    +   P 
Sbjct: 329 VTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVMEPVRPV 388

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +         ++D+G GI + E 
Sbjct: 389 PHKVLTDGTRLRQILWNLISNAVKFTQQ-GQVTVRVSYNDNEQLRFEVEDSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + SK  +G   +  +   R
Sbjct: 448 DKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSSKPGQGSTFVLTVQAPR 507

Query: 477 VLNFIPE 483
           V   + +
Sbjct: 508 VAEEVED 514


>gi|227505096|ref|ZP_03935145.1| histidine kinase [Corynebacterium striatum ATCC 6940]
 gi|227198299|gb|EEI78347.1| histidine kinase [Corynebacterium striatum ATCC 6940]
          Length = 420

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 4/247 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
               A+  F+A++SHEL+TP+  I   +E +      P + ET + + G +      + +
Sbjct: 150 RMEAARRDFVANVSHELKTPVGGIALLAEALLN---DPTDVETVEYFGGKLQNEASRMAD 206

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           ++NE++ LS+++          ++L ++V E I   QL A    IE+  +  P    V  
Sbjct: 207 MVNELISLSKLQGAEALPEMEPLNLDELVDEAISRNQLAADSHQIELT-RGKPVGVQVKG 265

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  +   I NL+SNA+ ++     V VT+         + + D G GIA  +   V   
Sbjct: 266 DKALLITAISNLISNAIHYSPDEMPVSVTLKIVGTDIVLVRVTDRGIGIAPEDQKRVFER 325

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +   A      G GLGL I + ++ANHGG   + S+   G      LP  +       
Sbjct: 326 FFRVDKARSRQTGGTGLGLAIVKHVVANHGGNIKLWSRPGTGSTFTIELPIYKDETAADN 385

Query: 484 DNHESTQ 490
             ++  +
Sbjct: 386 VENQDNE 392


>gi|25010797|ref|NP_735192.1| sensory box histidine kinase [Streptococcus agalactiae NEM316]
 gi|76787924|ref|YP_329468.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76798188|ref|ZP_00780439.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77410782|ref|ZP_00787140.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|77413072|ref|ZP_00789273.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|23095151|emb|CAD46386.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562981|gb|ABA45565.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76586451|gb|EAO62958.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77160865|gb|EAO71975.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|77163161|gb|EAO74114.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|319744747|gb|EFV97089.1| sensor histidine kinase VicK [Streptococcus agalactiae ATCC 13813]
          Length = 449

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDE---GALNEEVAPSFIKVSLDETNRMMRMISDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE-----IFQKIDPSLSSVWADEK 366
           SRI+     L     +    +   +        +K +      I +        V  D  
Sbjct: 268 SRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NAVK++  GG++ V +  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A    + G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 975

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E    A++ N AKS FLASMSHE+RTP+ AI+G  E+   + +     
Sbjct: 671 ITERKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGKI 730

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +   HRS   L+ LI E LDL+RIEAG  +LS +  SL ++    I +   +A 
Sbjct: 731 PSQG--LQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQELFDGVIELFSAQAG 788

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E+  +         W D   +RQV+ N+L NA+KFT   G V VT+  T       
Sbjct: 789 EKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQ-GAVVVTLDVTHDSPEST 847

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I+D+G GI       V   F Q S    +   G GLGL I + ++    G   + 
Sbjct: 848 RVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLH 907

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDN 485
           S+  +G  V   LP TRV    +P D+
Sbjct: 908 SEPGKGTLVTIDLPLTRVSEPVLPADD 934


>gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 7894]
          Length = 771

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|332702262|ref|ZP_08422350.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552411|gb|EGJ49455.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 556

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 159/395 (40%), Gaps = 22/395 (5%)

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL---VEPGTWTPEYLTIYKSATLLIALS 150
               +    +       L   IA  +   ++     +      P    I+   +    LS
Sbjct: 19  SRRYVFPEAIADAIQPSLEAAIAS-MPDGVMVFDAELRLARANPAARRIFGLGSEECRLS 77

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           ++ L+  +LP  +  +   V      +A     V    L   +             +   
Sbjct: 78  VTDLALVLLPARLGGTPLSVEDMPWMRAWRGEAVASERLMANVGGQTRHLLCSAAPIASG 137

Query: 211 NVKIL------SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               L         +++ D  ++ E         +  AE+ + AKS FLA+MSHE+RTPL
Sbjct: 138 PDGRLGVVVTVRDISDQIDADSQREALLLELRLAKAAAEDASRAKSLFLANMSHEIRTPL 197

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I+G +E+     +     +  ++Y+  + +S   LL+++N+ILDLSR+E+G  +L   
Sbjct: 198 NGIMGMTEL----ALAKEPRKEVRQYLELLKQSAHSLLDIVNDILDLSRVESGETQLVLR 253

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
              + D +   +  L L A++K +     + P +  +   D + +RQ+++NL  NAVKFT
Sbjct: 254 EFVVRDELEAAVRPLALSAKQKGLAFSMDVAPDVPEILTGDPQRLRQIMINLTGNAVKFT 313

Query: 384 AIGGRVHV----TVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
             GG   +     +      G+ +    ++D G GIA   +  V   F   +        
Sbjct: 314 RQGGIAVLVDIDALDRDPRGGKVLMHAQVRDTGIGIAPEHLANVFERFFTTAALDCPDSG 373

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I++ ++    G+  + S    G      
Sbjct: 374 GTGLGLAISRRLVEMMDGEIWVESVQGRGSTFHFT 408


>gi|229172696|ref|ZP_04300253.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
 gi|228610736|gb|EEK68001.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
          Length = 438

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 9/232 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L+
Sbjct: 216 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLI 273

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     + 
Sbjct: 274 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--IELM 331

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   ++QV LN++ NA+K++   G+V++      G+   I +KD G GIA+  +P +  
Sbjct: 332 GDRNRLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQ-AVIKVKDEGIGIAKEHLPYIEQ 390

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           SF Q +        G GLGL I + ++  HGG     SK   G  ++  LP 
Sbjct: 391 SFYQINNHAT----GAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLPL 438


>gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655]
          Length = 776

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 13/254 (5%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSAEQG---VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +   + Q     K +  G    G+GL +++ +  N GG   + S+  +G      +  
Sbjct: 448 DKIFAMYYQV----KDSHGGKPATGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHA 503

Query: 475 TRVLNFIPEDNHES 488
             V   + +   E 
Sbjct: 504 PSVAEEVDDAFDED 517


>gi|107026085|ref|YP_623596.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116692731|ref|YP_838264.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|105895459|gb|ABF78623.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116650731|gb|ABK11371.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia HI2424]
          Length = 1140

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++      P  L +   A+L++A+     S   L +A   +           A+    + 
Sbjct: 563 VLPGARLGPAALRLVHYASLVLAMLAVLGSVLYLIWAQSATSMRAAGPSIAHALSGSFLN 622

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEE 244
                 ++    +++  +     +   +    Q E   L I   +   +        AE 
Sbjct: 623 IFLALSLVGCIAAWWFVLERENRRVTQEESQRQNELLMLEIDAHQKTDAALKRATAAAES 682

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+++ +SHELRTPLN+ILG+++++                +  IHRSG+HLL L
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQ--AKEELTPMRYNAVRTIHRSGEHLLAL 740

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ +LD++RIEAG+ +L+ + +SL D V     ML+ +A EK +    +    L  +V  
Sbjct: 741 VDGLLDIARIEAGKLQLNVAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRT 800

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K M Q++ NL+ NA++FT+  G + + V           + D GPGI   E+  +   
Sbjct: 801 DQKCMSQILTNLIGNAIRFTSS-GTITLRVSHVLD-TLKFEVIDTGPGIPPAELERLFLP 858

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G  A      G GLGL I + +    GG   + S++  G   +  L     ++   E
Sbjct: 859 FERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFVVRL-FAPAVDAAAE 916

Query: 484 DNHESTQYKCY 494
            + E    + Y
Sbjct: 917 THAELASIRGY 927


>gi|310639904|ref|YP_003944662.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244854|gb|ADO54421.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1020

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 177/459 (38%), Gaps = 14/459 (3%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100
              ++  +  I+ L   L   +  +        ++    +     ++      +  D   
Sbjct: 208 FTIAMQIMVCIILLLHGLYIVVIFFMNPQKKALLYFAGIVICTVLSILTDDDKLLLDWFP 267

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY---KSATLLIALSISALSNF 157
             + +      +  I IG+C   L            +        A L++    S+L  F
Sbjct: 268 INLGLSLKITTLSYIGIGMCVLKLAQSLLVRSRIIQIVFIGHCCFAILVLLAPASSLYAF 327

Query: 158 -----MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                 LP     +  P +  L T       V  +  +  +A+++ +  + T  L     
Sbjct: 328 LMVLIALPAITLCATVPSLAFLRTFRGQKEAVFLLLASISIASSMLWGIFKTNDLPYYPW 387

Query: 213 KI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            I L+  A             +       R +  +  K+ FLA+ SHELR PL+ ++  +
Sbjct: 388 DIVLAFVAFASYWFKRFFNTNAELRRLSDRLQRADQVKNEFLANTSHELRNPLHGMINIA 447

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           + +       L+    +     +   G+ +  L+N++LD++R+      L + ++    +
Sbjct: 448 QTVLENQGSALDEPNRRNM-QLLVTVGRRMSLLLNDLLDVTRLREKDIILEKRSLKPKAV 506

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
               + MLQ     K + +   I     +V ADE  + Q++ NLL NAVK TA  G + V
Sbjct: 507 ASGVLDMLQFMTDGKPLNMVVNIPADFPNVLADENRVIQILFNLLHNAVKHTAE-GTISV 565

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                 G    I ++D G GI E     +   + QG+  +     G+GLGL I++ ++  
Sbjct: 566 HAHIQ-GEMASIQVRDTGVGIDEETQKRIFHPYEQGNSHLTVIGDGLGLGLSISKQLVEL 624

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           HGG   + S+L +G      LP     +  P+++ ++ Q
Sbjct: 625 HGGSLSVSSELGQGSTFSFTLPLDP--SPTPDESRDNEQ 661



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 19/179 (10%)

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             ++NLI E     R       L    +SL   +      L +  +     +    +    
Sbjct: 852  RMVNLIEEFGKYLRSSFNPQNLDRV-VSLEYELALLKSYLYIEKERFGNRLDIVWEVDEQ 910

Query: 360  SVWADEKGMRQVILNLLSNAVKFTA----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                      Q    L  NA++        GG + + +         I+I D+G G+++ 
Sbjct: 911  ISLLLPPLSIQP---LAENAIRHGIMNRIHGGTLCIRIQQREDGT-EIAIIDDGVGMSQE 966

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIA-QSIMANHGGQFLIRSKLREGVEVIAILP 473
            E+  +L             EQ  G+GL    + +   +G    I S   +G  V   +P
Sbjct: 967  ELDRLL---------SHHQEQDSGIGLRNTNRRLKQVYGKGLSISSLPNQGTTVSFHVP 1016


>gi|170729883|ref|YP_001775316.1| histidine kinase/response regulator hybrid protein [Xylella
            fastidiosa M12]
 gi|167964676|gb|ACA11686.1| histidine kinase/response regulator hybrid protein [Xylella
            fastidiosa M12]
          Length = 1179

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 167/411 (40%), Gaps = 41/411 (9%)

Query: 86   NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145
             +  G+++     +  E+      L+VG   +          +P +    Y         
Sbjct: 633  VIRAGRRIDFPVDRPFELLPNDRQLIVGARLLS-------FGDPLSNRYSYWLKGFDTGW 685

Query: 146  LIALSISALSNFMLPYAVFLSFFPVVVALS---------TQAIMSMHVLDISLAGMLATA 196
            +   S        LP A +         +           + +         ++ +  + 
Sbjct: 686  IDQGSSGTREFSSLPPADYTLLIQGTDPMGNLSRIHLVTFRVLPPWWRSAWGMSVLTGSG 745

Query: 197  LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            L     ++++  +   +    Q E+                 R+ AE  +LAK++FLA++
Sbjct: 746  LLLLWGVSWNYHRRLRRRARLQLEQHQ---------------REVAERASLAKTQFLATL 790

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
             HE+RTP+  +LG SE++    +          Y   I   G+HLL L+N+ LDL++IEA
Sbjct: 791  GHEVRTPMTGVLGMSELLLETPLDT----RQHGYATSIQAVGKHLLRLVNDALDLAKIEA 846

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G+  L         ++ + + M++   + K +    ++DP +   V  D   ++Q++LNL
Sbjct: 847  GKLSLERRDFDFHALLEQVVAMIRPMVERKGLRFVYRLDPEVPQYVHGDADRLQQILLNL 906

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSI-AI 431
            L NA KFT   G V + V     +   G  I + D GPG++E +   +   F Q +  + 
Sbjct: 907  LINATKFT-EHGEVVLQVAPGQEQACLGVRIDVVDTGPGLSEEQCQRLFRRFEQVNGAST 965

Query: 432  KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
             +   G GLGL I + +     G+  + S+L +G     +LP   VL   P
Sbjct: 966  AARYGGSGLGLAICRELATVMEGEIHVDSELGKGTCFRVLLPLPWVLAVQP 1016


>gi|170738019|ref|YP_001779279.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169820207|gb|ACA94789.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1140

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++      P  L +   A+L++A+     S   L +A   +           A+    + 
Sbjct: 563 VLPGARLGPAALRLVHYASLVLAMLAVLGSVLYLIWAQSATSMRAAGPSIAHALSGSFLN 622

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEE 244
                 ++    +++  +     +   +    Q E   L I   +   +        AE 
Sbjct: 623 IFLALSLVGCIAAWWFVLERENRRVTQEESQRQNELLMLEIDAHQKTDAALKRATAAAES 682

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+++ +SHELRTPLN+ILG+++++                +  IHRSG+HLL L
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQ--AKEELTPMRYNAVRTIHRSGEHLLAL 740

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ +LD++RIEAG+ +L+ + +SL D V     ML+ +A EK +    +    L  +V  
Sbjct: 741 VDGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRT 800

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K M Q++ NL+ NA++FT+  G + + V           + D GPGI   E+  +   
Sbjct: 801 DQKCMSQILTNLIGNAIRFTSS-GTITLRVSHVLD-TLKFEVIDTGPGIPPAELERLFLP 858

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G  A      G GLGL I + +    GG   + S++  G   +  L     ++   E
Sbjct: 859 FERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFVVRL-FAPAVDAAAE 916

Query: 484 DNHESTQYKCY 494
            + E    + Y
Sbjct: 917 THAELASIRGY 927


>gi|124262616|ref|YP_001023086.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
 gi|124261862|gb|ABM96851.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
          Length = 527

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            KSRFLA+MSHE+RTPLN ++G +E+++   +   +     + +  + +S + L+ LIN+
Sbjct: 1   MKSRFLATMSHEIRTPLNGVVGAAELLQKNGL---SEREKAQMVSLLTQSSRALMALIND 57

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366
           ILD S+++ G+  +    I+L  +V E   +   +A  K+IE+    +P +   +  D  
Sbjct: 58  ILDWSKLDVGKVMIERHPINLRALVFESNELFAAQAANKDIELTSSCNPDVPRTLHGDPT 117

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------SGRGQYISIKDNGPGIAEG 415
            +RQ++ NL+SNAVKFT  GG VH+ +                R   I + D G GI+  
Sbjct: 118 RIRQIVNNLVSNAVKFTERGG-VHIHLSIDGIDPSERHQEGDPRTVRIEVSDTGIGISPE 176

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           ++  +  +F QG +++     G GLGL I+Q +    GG+  + S    G    A+LP
Sbjct: 177 KLGKLFKAFSQGDVSVTRNFGGTGLGLVISQELANLMGGRIEVSSTPGVGSVFTALLP 234


>gi|225851032|ref|YP_002731266.1| histidine kinase [Persephonella marina EX-H1]
 gi|225645773|gb|ACO03959.1| histidine kinase [Persephonella marina EX-H1]
          Length = 666

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 8/239 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           E   +A+  + AKS F+++MSHELRTPLN+I+GF++ +++       +E   +    I  
Sbjct: 435 ELLHKAQSASRAKSAFISNMSHELRTPLNSIIGFAQYLQM----AETDEENIKAARSIEL 490

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           +G+HLL++IN+ILD ++IEAG  ++++ +  +  ++ E   M+Q   QEK +++    + 
Sbjct: 491 AGRHLLDMINDILDFAKIEAGAVKVNKRSFPVKKLIDEISAMVQPLIQEKGLKLIL-PEN 549

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           + + +  D + ++QV+LNLLSNAVKFT   G + + V        Y S+ D G GI+   
Sbjct: 550 TDTVINTDYRLLKQVLLNLLSNAVKFTEE-GYIKIDV-RKDNGKIYFSVIDTGIGISREN 607

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           I  +   F Q    ++   +G GLGL I++  +   GG+    S+   +G +    +P 
Sbjct: 608 IDKLFKDFTQLENPLQKKYKGTGLGLAISKKYIELLGGEIYAYSEGEGKGAKFEFYIPL 666


>gi|254248176|ref|ZP_04941496.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124874677|gb|EAY64667.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 1140

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++      P  L +   A+L++A+     S   L +A   +           A+    + 
Sbjct: 563 VLPGARLGPAALRLVHYASLVLAMLAVLGSVLYLIWAQSATSMRAAGPSIAHALSGSFLN 622

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEE 244
                 ++    +++  +     +   +    Q E   L I   +   +        AE 
Sbjct: 623 IFLALSLVGCIAAWWFVLERENRRVTQEESQRQNELLMLEIDAHQKTDAALKRATAAAES 682

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+++ +SHELRTPLN+ILG+++++                +  IHRSG+HLL L
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQ--AKEELTPMRYNAVRTIHRSGEHLLAL 740

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ +LD++RIEAG+ +L+ + +SL D V     ML+ +A EK +    +    L  +V  
Sbjct: 741 VDGLLDIARIEAGKLQLNVAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRT 800

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K M Q++ NL+ NA++FT+  G + + V           + D GPGI   E+  +   
Sbjct: 801 DQKCMSQILTNLIGNAIRFTSS-GTITLRVSHVLD-TLKFEVIDTGPGIPPAELERLFLP 858

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G  A      G GLGL I + +    GG   + S++  G   +  L     ++   E
Sbjct: 859 FERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFVVRL-FAPAVDAAAE 916

Query: 484 DNHESTQYKCY 494
            + E    + Y
Sbjct: 917 THAELASIRGY 927


>gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 661

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 15/264 (5%)

Query: 238 TRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            RKRAEE     + AK  FLA+ SHELRTPL A  G + +  L+  G     T K  +  
Sbjct: 404 ERKRAEEALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKS-LKI 462

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+R    +  L+ ++LD+SR++AGR  L      L  ++RE    + + +Q   + +  +
Sbjct: 463 INRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQ 522

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                     D   + QV+ NLLSNA++++  GG V V           +S+KD G GI 
Sbjct: 523 EQLEGLW---DRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEG-VQLSVKDCGVGIP 578

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAI 471
             +   +   FG+   +      G+GLGL I+Q I+  HGG+  + S+    +G      
Sbjct: 579 PEKQGLIFERFGRAHGS---KYGGLGLGLTISQGIVEQHGGRIWVDSQGCAGDGSTFHVW 635

Query: 472 LPNTRVLNFIPEDNHESTQYKCYA 495
           LP   V    PE    S+     A
Sbjct: 636 LPREAV-QTGPETPSASSDEHSRA 658


>gi|302037583|ref|YP_003797905.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605647|emb|CBK41980.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 490

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 149/337 (44%), Gaps = 15/337 (4%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           +++      L   + L    + V ++     S+H   ++   +L   +          + 
Sbjct: 146 ALAGKMASTLQQYIGLHEARIAVGVNESHASSVHAEAVTRQLVLVALMFGLGMAAVASYN 205

Query: 210 SNVKILSCQAEKDDLIAELEVAK---SLSDETRK----------RAEEENLAKSRFLASM 256
               +   Q+   ++      A        E R+          R ++ +  KS FLA +
Sbjct: 206 ILRPLRRLQSTIQEMGQGNFRATMDGQAPRELRELGDTVKWMGTRLQQLDDIKSEFLAHV 265

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTP+ +I   + ++  E  GPL  +  +  +  +  S + L+ LI+ ILDLS++E+
Sbjct: 266 SHELRTPMASIQEGTHLLLDEIPGPLTQD-QRTTLRIMSDSSRRLMYLISTILDLSKMES 324

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G  E   +   L  +    +  ++L A  K + +  +       V AD   + QV+ NLL
Sbjct: 325 GMMEYRFAPTDLRRVADISVNKIRLLADAKQVRLLVEAPVERHWVRADSARIEQVLDNLL 384

Query: 377 SNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           SNA+K++  G  V + +         ++ + D GPGI   E+P +   F QG    +   
Sbjct: 385 SNALKYSPEGAAVTLHMEPRRDEGLMFVDVTDCGPGIPTEEVPHIFERFYQGRTKTRHVS 444

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            G GLGL +A+ ++  HGG+  + S++ +G  V  +L
Sbjct: 445 VGSGLGLALAKKVVEAHGGRIWVDSEVGKGTTVRFML 481


>gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
 gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
          Length = 1372

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 15/320 (4%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
                   + +  +     +++    + L    + +L  +      I ++++A+   +  +
Sbjct: 785  WDKTPTTLEIVVLPVWYKTWWARTLFLLLIVGLALLVFRYVLSRKIDKMQLAQERRE--K 842

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +R +E N  K RF   +SHELRTPL  I    + +E  T    +    ++ +  I R+  
Sbjct: 843  QRIQEVNEMKQRFFIDVSHELRTPLTLICSPLQDLEDRTDDSWS----QKQLTIIGRNVN 898

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             LL L+N+++D  R E G ++L  + ++L +IV     + +  A +  I+          
Sbjct: 899  KLLYLVNQLMDYRRAELGVFKLQVTHVNLHEIVERVFSLFEKLAVKNKIDYKLTSTLQGK 958

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415
             V  D   +  ++ NLLSNA K+T  G R+ V +G    +      ++ + D G GI E 
Sbjct: 959  EVLCDPAYIETILNNLLSNAFKYTHAGQRIDVRIGQEDDKFGKRRTFLQVSDTGEGIPED 1018

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                V   F Q +        G G+GL + + ++  H G+  + S   +G      LP+ 
Sbjct: 1019 LQDKVFERFFQVNSMHT----GSGIGLSLVKRLVTMHHGEITLDSSQGKGATFSVWLPDD 1074

Query: 476  RVLNFIPEDNHESTQYKCYA 495
            +   + P +  E  + K YA
Sbjct: 1075 QGA-YQPGEIAEDNKVKPYA 1093


>gi|238761196|ref|ZP_04622173.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238761449|ref|ZP_04622425.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238700423|gb|EEP93164.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238700676|gb|EEP93416.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
          Length = 966

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 10/266 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+  I+G  E+         + 
Sbjct: 401 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYVIMGLLELELRS-----DQ 455

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  +  S Q L+ L+++I+D ++IEAG+  +  + +     +   +++ Q  A 
Sbjct: 456 PVDKNTLATVSNSAQSLMLLLDDIIDSAKIEAGQLSVHPAEVDFRQEIGRMLLIYQPIAD 515

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           E+++++ + +D  +   V  D   MRQV+ NLL NA+KFT  GG    +           
Sbjct: 516 ERHLKLSRWLDDQIPDLVIVDMLRMRQVMGNLLGNALKFTEQGGVSVDITWEATDEKQGV 575

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + S
Sbjct: 576 MNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGEITLES 635

Query: 461 KLREGVEVIAILPNTRVLNF-IPEDN 485
           +L +G  +   LP        +P D+
Sbjct: 636 QLGKGTSLFITLPLEIATTSDLPPDS 661


>gi|305664454|ref|YP_003860741.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170]
 gi|88708471|gb|EAR00707.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170]
          Length = 728

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 17/290 (5%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
             A + +  L   + +   L+++N         K      L+   S     R  A     
Sbjct: 299 ITAILTSAFLIIISLLAVSLYRNNQ-------IKLKTNTLLQTKNSELQAARDEAVNAME 351

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK+ FL+++SHELRTPL A+ G + ++  E      +E  KE++  +  SG +LLN IN+
Sbjct: 352 AKTNFLSTVSHELRTPLYAVTGLTHLLLEE----NPSENQKEHLKALKFSGDYLLNFIND 407

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           IL +++I+A + E      +L  +++E I  LQ  A+E N EI    D ++   + +D  
Sbjct: 408 ILHINKIDADKLEPLNMEFNLKKVLKEVIDSLQQSAKENNTEIILDYDDTIPSHLMSDPL 467

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            + Q+ +NL+ NA+KFT   G V V              Y  + DNG GI++ +   +  
Sbjct: 468 KLSQIFMNLIGNALKFT-KNGEVKVVAQMVHKEEEDVTLYFEVLDNGIGISKEQQQKIFE 526

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F QGSI I     G GLGL I +S++     Q  ++S L +G      L
Sbjct: 527 GFEQGSIQINREYGGTGLGLTIVKSLLGLFDSQIKLQSDLGQGSSFFFEL 576


>gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
 gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
          Length = 477

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 3/233 (1%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+ + SHELRTPL +I G+ + ++ +       +  K ++  + R+   L++
Sbjct: 248 RAEQIRMDFVGNASHELRTPLTSIKGYVDTLKEDVKTGQIQQAGK-FLDIVSRNIDRLMD 306

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++L ++ +EA   EL    I  + I    +  L + A EKNI I       +    A
Sbjct: 307 LVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVMAAEKNITIRVN--GDVPPFLA 364

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + + QV+ NL+SNAVK+   G  + +           + + D+G GI E  +  +   
Sbjct: 365 DARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYIILRVIDDGQGIPEQHLDRLFER 424

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +          G GLGL I + IM +HGG   ++S + +G E I   P  +
Sbjct: 425 FYRIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIVDQGSEFICSFPIRK 477


>gi|16331424|ref|NP_442152.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1001594|dbj|BAA10222.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1178

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 6/251 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I +++ A+  +  +  +  E N AKS+F+  +SHE RTPL +I+GF E++  +    L+ 
Sbjct: 916  ITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELL-SKYFDRLST 974

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ-LRA 343
            E  ++YI +I  S Q L  LI+++L +SR +A + E+    I+L ++  + I        
Sbjct: 975  EKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLG 1034

Query: 344  QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             E N E+   + P   S+  D + +R ++ N+LSNA+K++A G  + + +          
Sbjct: 1035 SEHNFELNYHLKPDEHSL-VDVRLLRHILENILSNAIKYSAPGSTITLDISKDEEH-LLF 1092

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
             ++D G GI   +   +  +F + S        G GLGL I +  +   GG   + S   
Sbjct: 1093 QVRDEGIGIPLQDQEKLFEAFHRASNV--GDIPGTGLGLSIVKRYVEFQGGTIEVISMPG 1150

Query: 464  EGVEVIAILPN 474
            +G  ++  LP 
Sbjct: 1151 KGTTMVIKLPL 1161


>gi|323492426|ref|ZP_08097574.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
 gi|323313213|gb|EGA66329.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
          Length = 569

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E R RAEE   +   F+A ++HELRTPLN +LG +E++   ++    NE  +  + ++ 
Sbjct: 196 QEARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADTSL----NEEQQTLLSNLA 251

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            SG  L ++IN+ILD S++ AG  EL  S  S +++      + + +AQEK IE   +  
Sbjct: 252 HSGDLLRHIINDILDFSKMNAGMMELIPSQFSWVELSNMIDGIFRPKAQEKGIEFTIEQT 311

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             L +    D + + Q+++NL+ NA+KFTA  G V +   W       +SI D+G GI+ 
Sbjct: 312 NQLPAAFIGDFERIGQIVVNLVGNAIKFTAQ-GEVKLVAEWDVD-CLKMSIIDSGVGISN 369

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                + T F Q   + K   +G GLGL I ++++    G+  + S+L +G      +P 
Sbjct: 370 ELHDQLFTPFIQVDRSAKRNFEGTGLGLAICKNLVELMLGEISLTSELGKGSCFNVTIPL 429

Query: 475 TRVLNFIPEDNHESTQY 491
                    DN  S + 
Sbjct: 430 KVTTLSSTSDNPVSVEI 446


>gi|300814230|ref|ZP_07094506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511654|gb|EFK38878.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 605

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             ++ +  F+A++SHEL+TP+  I  ++E +     G    E    ++  I R    +  
Sbjct: 369 RLDILRKEFVANVSHELKTPITTIGSYTETLLNGVAG----EDINHFLKVIERENARMAR 424

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L LS I+  +  L++      + + E +    L   +K+  I   +   + ++++
Sbjct: 425 LVSDLLVLSNIDYKKEHLNKETFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYS 484

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTV 420
           D  G  Q+++N++SNA+K+T  GG++ +              IS+KDNG GI + ++P +
Sbjct: 485 DRHGASQILINIISNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMI 544

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +          G GLGL IA  ++ + GG   I S L  G +V    P 
Sbjct: 545 FERFYRVEKGRSREMGGTGLGLSIANEMIKSLGGSIKISSTLNVGTDVELFFPA 598


>gi|260220991|emb|CBA29109.1| Phosphate regulon sensor protein phoR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 420

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 7/261 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            L    E    L        E+    +  F+A++SHE+RTPL  + GF E ++     PL
Sbjct: 164 HLHPYGEGRNLLLSRDITALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQTL---PL 220

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC---IIML 339
           +    + Y+  + +    + +L+N++L LSR+E          + ++ ++++C      L
Sbjct: 221 DESERQSYLNLMSQQATRMQSLVNDLLTLSRLEGSPAPSGSDLVDMVQLLQQCKQEAHNL 280

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
                 K  +I   +     +V      +   + NL+ NA+++T     + V    T+  
Sbjct: 281 SSLVWGKPQDIQFLVS-DAVAVTGSPSELHSAVFNLIGNAIRYTPADKSIRVHWHKTAEG 339

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +S++D GPGIA   IP +   F +   +      G GLGL I + +   HG + LI 
Sbjct: 340 EGELSVQDTGPGIAPEHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELLIE 399

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S    G          RV   
Sbjct: 400 SIPGRGSTFTLRFRAARVRPQ 420


>gi|261856180|ref|YP_003263463.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261836649|gb|ACX96416.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 1178

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 11/360 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
            +  Y    L+  L++     F        S  P  +A+     M +  L ++L  + A 
Sbjct: 573 RIGYYLLLILISGLALGTTLLFFYLQQ-LSSMPPDDLAI---FRMLLIKLFVALFALTAI 628

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +        + +  +         + I           +  K AE  N AKSR++A 
Sbjct: 629 GGWWLALTLESRYVAQDESNRQTHLLMNEIEAHLKTDVQLQKAIKAAESANQAKSRYMAG 688

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPLN ILG+++++E +   P      +E +  I RSG+HL++LIN +LD+++IE
Sbjct: 689 ISHELRTPLNCILGYAQIVEHDPAVPR---QRREEMKVIRRSGEHLISLINGLLDMAKIE 745

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILN 374
           AG+  +    +     V +   M +L+AQEK I+   ++   L   V  D+K + Q+++N
Sbjct: 746 AGKLTIEPEEVHFPQFVAQLADMFRLQAQEKRIQFNFEVVDELPPVVRVDKKRLGQILIN 805

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           +L NA+KFT   G V   + + S       I+D G GI E +   +   F +GS A  +A
Sbjct: 806 ILGNAIKFTER-GHVTFRISYRSE-LARFEIEDTGIGITESDRKRIFLPFERGSNATGNA 863

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
               GLGL IA  +    GG+  +  +   G      L  T V N  P+     +    Y
Sbjct: 864 AS-AGLGLTIASMLATLMGGELTVHEREGGGSRFQLRLLLTAVRNPRPQPMDTPSNILGY 922


>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Serratia proteamaculans 568]
 gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
           proteamaculans 568]
          Length = 957

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPL  I+G  ++++ + +     +     +  ++ S   LL +I++I
Sbjct: 473 KSMFLATVSHELRTPLYGIIGNLDLLQTKAL----PQGVDRLVNAMNNSSGLLLKIISDI 528

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IE+ + ++     S ++++            +K + ++  I+ ++   +  D   
Sbjct: 529 LDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRLGLYCFIEQNVPERISGDPVR 588

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV+ NLL+NA+KFT   G + + V  T G     S++D G GI E EI  +   F Q 
Sbjct: 589 LQQVLSNLLNNAIKFTDT-GCIILQVC-TRGSYLEFSVRDTGVGIPEKEITRLFDPFFQV 646

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              ++   QG GLGL I + ++    G   + S+   G      +P       IP+ + 
Sbjct: 647 GSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSLFTIRIPLFNAQFPIPQPSD 705


>gi|317488181|ref|ZP_07946753.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316912726|gb|EFV34263.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 713

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 9/246 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL  MSH++RTPLNAI+G +E+         +++T K+++    +SG++LL++IN++
Sbjct: 332 KSDFLTKMSHDIRTPLNAIMGSNELALRSI---DDSKTLKKHLETSRKSGEYLLSIINDM 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKG 367
           LDLSRIE+G+  ++    +L D++   I++    A++K + +              D+  
Sbjct: 389 LDLSRIESGKMAMANRPFALPDLLDSIIVLQSGPAEKKGVVLKESSRHLVHECFLGDDTR 448

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTS 423
           ++Q ++NL+SNAVKFT   G V V+    +          ++KD G G++E  +  +   
Sbjct: 449 IKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVKDTGIGMSESFMKRLFEP 508

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IP 482
           F Q   ++ S + G GLGLPI  ++++  GG   + S    G   +  +P   +     P
Sbjct: 509 FEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGTTFVVEIPLKPLDEPCRP 568

Query: 483 EDNHES 488
            D+ +S
Sbjct: 569 ADDRDS 574


>gi|77408345|ref|ZP_00785086.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
 gi|77173026|gb|EAO76154.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
          Length = 449

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDE---GALNEEVAPSFIKVSLDETNRMMRMISDLLSL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE-----IFQKIDPSLSSVWADEK 366
           SRI+     L     +    +   +        +K +      I +        V  D  
Sbjct: 268 SRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NAVK++  GG++ V +  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A    + G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|209363900|ref|YP_001424221.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081833|gb|ABS77759.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 831

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 269 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTS 328

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 329 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRT 388

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 389 IELLQPVAHQKKLTLACEVDEGVPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 447

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 448 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 507

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 508 VKRYVDAMGGEITVDSEVGKGTCFTVIIP 536


>gi|28199692|ref|NP_780006.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
 gi|28057813|gb|AAO29655.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
          Length = 499

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 221 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 280

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 281 EEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGL 337

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   + K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 338 YEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 396

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 397 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 456

Query: 459 RSK-LREGVEVIAIL 472
            S  L +G      L
Sbjct: 457 TSPGLGKGAMFTVSL 471


>gi|115524300|ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115518247|gb|ABJ06231.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 729

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 143/335 (42%), Gaps = 11/335 (3%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFF 200
           A +  +L+   L +               V    +      V D  L   +  A    F 
Sbjct: 235 AAVGASLATGRLMSEFAQRPAGSFTAASAVDGVVRIFSYRKVGDYPLVVSVGQASDEVFA 294

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
            Y +       V  L        + A +   ++   ++R  AE    A+S FLA MSHE+
Sbjct: 295 PYRSDRDKDIMVAAL-LTLVIIVVSALIIRYQTGLAKSRDAAEMGTRARSEFLAMMSHEI 353

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+N ++G ++++    +         +    +  S  +LL L+N++LD S+++A R E
Sbjct: 354 RTPMNGVIGLADLL----VAADLPGEQNKIAATLRESADYLLQLLNDVLDFSKLDANRLE 409

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           +      L   V   I +L  RAQEK + +  +I P++  S+  D   +RQV+ NL+ NA
Sbjct: 410 IERIDFGLHRSVHATIDLLAPRAQEKGLSLTARIGPNVPDSITGDPARIRQVLFNLVGNA 469

Query: 380 VKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +KFT  G    V     +          + D G GI    +  +   F QG  +I     
Sbjct: 470 IKFTQAGSVEVVVEAEAAVGNAVRLVFKVIDTGVGIPAESLGLLFREFSQGDSSISRRFG 529

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           G GLGL I + ++A  GG+  ++S++ +G      
Sbjct: 530 GTGLGLAICKRLVACMGGEISVQSRVGKGSVFRFS 564


>gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 595

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++R E     +  F+A++SHEL+TP+ AI GF E +    +   +      ++  + R  
Sbjct: 363 QRRLET---MRRDFVANVSHELKTPITAIKGFVETLLDGALDSRDESEQ--FLKIVERQV 417

Query: 299 QHLLNLINEILDLSRIEAGRY--ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + L  +I +++ LSRIE G            L +++ E +    + A+   I + Q++D 
Sbjct: 418 ERLSVIIEDLMSLSRIEQGEEHERFDLEPEKLAEVISESVNDCTVLAEGLGITLKQELDQ 477

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            L+S   +   + Q + NLL NA+K+++    V +   +       + + D G GI    
Sbjct: 478 DLTS-PLNAPLLEQALTNLLENAIKYSSTDSTVTIRC-YEEDGRAIVRVCDEGCGIEAEH 535

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P +   F +   A      G GLGL I + I+  H G+  + S   +G + I  LP 
Sbjct: 536 LPRLFERFYRVDKARSRQAGGSGLGLAIVKHIVQIHHGRVEVESTPGKGSDFIISLPL 593


>gi|289642527|ref|ZP_06474671.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
 gi|289507701|gb|EFD28656.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
          Length = 904

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 172/397 (43%), Gaps = 20/397 (5%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
           + V Q+  G  +    L E        + +     +L  + +++ + F   +   +    
Sbjct: 264 IRVEQVPNGYLYIRSGLGEAPPSDLVVVPVLFEEQVLGVIELASFTRFSELHLHLVDQLV 323

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
             + +    IM+    +  LA             +  L ++N ++    A  ++   E+E
Sbjct: 324 GTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQSVELQRTNNELEEKAALLEEKNREIE 382

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +A+   +E  ++    +  K+ FLA+MSHELRTPLN++L  ++++       L      +
Sbjct: 383 MARIGLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLLLAKLLADNPEANLT-PKQID 441

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           +   IH +G  LL LIN+ILDLS++EAG+ ++  + +    +      +    A+E+ + 
Sbjct: 442 FAETIHSAGSELLELINDILDLSKVEAGKMDVEATTVRTTTLCDAVAQIFGPLAEERGLS 501

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402
               +   +      DE+ ++QV+ NLLSNAVKFT   G V + V   S    +      
Sbjct: 502 FEVTVASDVPAEFVTDEQRIQQVLKNLLSNAVKFTDS-GEVRLDVTVASDEIAFTAPSLS 560

Query: 403 -------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                   S+ D G G+A  ++  +  +F Q          G GLGL I++ ++   GG 
Sbjct: 561 AAPVALAFSVSDTGIGVAADKLRMIFEAFQQADGTTSRRYGGTGLGLSISKELVRLLGGA 620

Query: 456 FLIRSKLREGVEVIAILP---NTRVLNFIPEDNHEST 489
             + S + +G      +P    + VL      ++E T
Sbjct: 621 IGVASAVGQGSTFTLYVPSVMPSEVLPSTTPGDNEGT 657


>gi|266624978|ref|ZP_06117913.1| sensory box histidine kinase VicK [Clostridium hathewayi DSM 13479]
 gi|288863132|gb|EFC95430.1| sensory box histidine kinase VicK [Clostridium hathewayi DSM 13479]
          Length = 481

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + + L +     L  +   +    E         +T K+ +  + ++  F++++SHEL+T
Sbjct: 210 LQWKLKRVEEGNLDEELSSNA-YTETRQITESISKTLKKLKAVDQSREEFVSNVSHELKT 268

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE--AGRYE 320
           P+ +I   ++ +    M  +  E Y+E++ DI         +I+++L L R++  AG  E
Sbjct: 269 PITSIRVLADSLMS--MDDVPVELYREFMTDISDEIDRESKIIDDLLALVRMDKTAGT-E 325

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           L+ + +++  ++   +  L+  A ++N+E+  +    + +   DE  +   + NL+ NA+
Sbjct: 326 LNIAQVNVNGLLELILKRLRPIAGKRNVELTFESIREV-TADVDEVKLSLALNNLVENAI 384

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K+   GG V VT+     +  Y+ + D+G GI+E     +   F +   A      G GL
Sbjct: 385 KYNVEGGWVRVTLDA-DHKFFYVKVADSGIGISEEFQEHIFERFYRVDKARSRETGGTGL 443

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL I ++I+  H G   + SK  EG      +P 
Sbjct: 444 GLAITKNIILMHQGAIRLSSKEGEGTTFTVRIPL 477


>gi|330807015|ref|YP_004351477.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375123|gb|AEA66473.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 744

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 146/333 (43%), Gaps = 17/333 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S             T L      ++ ++K 
Sbjct: 418 ASGVLAIHLPKPVENGVLWFRPEVKQTLQWSGDPQKPLDLENSETGLRLRPRTSFEIWKV 477

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETR--KRAEEENLAKSRFLASMSHELRTPLNA 266
            +  +S +    DL A  ++ +S    D  R  ++  +   A+   +A +SH+LR+P+  
Sbjct: 478 EMAGISTKWTHGDLFAANDLRRSALENDLARQVRKERQAVQARDELVAVVSHDLRSPMTV 537

Query: 267 ILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     ++     + G  +++     I  + ++   +  L+ ++LD SRI+AGRY ++  
Sbjct: 538 ISMLCGMMRKAFSSDGSHSSKRISSAIDTMQQATSRMNALLEDLLDTSRIDAGRYTINPQ 597

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + +  I  +   +L   A  K I+I    +P+L  + AD + + QV+ NL+ NA+KFT 
Sbjct: 598 PMDVSQIFEDACSLLTPLATAKAIDISFHAEPNL-RINADPERLFQVLSNLIGNAIKFTP 656

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ---GVGLG 441
             G V ++   + G     S++D G GIA  ++P V   +        + E    G GLG
Sbjct: 657 QQGTVGISA-MSVGDEIVFSVRDTGEGIAPEQLPHVFERYW------TTKEGNPNGTGLG 709

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L I++ I+  HGG+    S+  +G E    +P 
Sbjct: 710 LYISKGIVQAHGGKLHAESQPGQGSEFRFTVPK 742


>gi|284929382|ref|YP_003421904.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
 gi|284809826|gb|ADB95523.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
          Length = 652

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS+F++++SHELRTPL  I  F E +  E    L +   KE++   +     L  L
Sbjct: 392 LNEAKSQFISNVSHELRTPLFNIKSFIETLA-EFGQDLTDAERKEFLETANHETDRLTRL 450

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           +N++LDLSR+E+ +     SA+ L  ++ + I   +L A++K + +++++   L  V   
Sbjct: 451 VNDVLDLSRLESFK-TYYLSAVDLSQLIEQTIRTYRLNAKDKELTLYKEVKSDLPLVLGH 509

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------TSGRGQYISIKDNGPGIAEGE 416
              + QVI NL+ NA+KFT  GG + V   +         +     I + D G GIA  +
Sbjct: 510 YDLLLQVINNLVGNALKFTPSGGTIVVRAYYFKVKSKQSNNKSFVRIEVSDTGIGIAPED 569

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   F +         +G GLGL I  +I+  H  Q  + S++  G      L
Sbjct: 570 QTAIFDRFFRVEN-RVHTLEGTGLGLSIVTNIINKHHSQTNLISEIGVGTTFWFDL 624


>gi|160945119|ref|ZP_02092345.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442850|gb|EDP19855.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105635|emb|CBL03179.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 449

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F A++SHEL+TPL +I G++E+IE     P +     ++   IH     ++
Sbjct: 218 ENNEKMRQEFTANVSHELKTPLTSISGYAELIETGIAKPEDVP---DFGRKIHSEATRMI 274

Query: 303 NLINEILDLSRI----EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            L+N+IL LS++    E G        + L+++ +EC+   +L A+   I +    + + 
Sbjct: 275 QLVNDILQLSKLDTVSETGD-TPVMETVDLLEVAKECVERQKLNARRAYISLTYLGESAP 333

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             V      + ++  NL  NA+++   GG+V +           +++ DNG GI      
Sbjct: 334 --VLGSRALLDELCQNLCDNAIRYNRPGGKVQIITTCNRDGHCSLTVADNGIGIPREAQA 391

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +V   F +   +   A  G GLGL I + I   H  +  + S++  G  +    P  
Sbjct: 392 SVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQVDVGTTITVTFPTA 448


>gi|328954299|ref|YP_004371633.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454623|gb|AEB10452.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 591

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 10/239 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +       +  F+A++SHELRTP+ +I GF E ++   +   +N     ++  + R    
Sbjct: 358 KMRRLERIRRDFVANVSHELRTPITSIKGFVETLQSGAIYEPDNAV--HFLNIMARQADR 415

Query: 301 LLNLINEILDLSRIEA----GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           L  +I ++L LSRIE     G+  L+     L  +++  I + ++RA EK I I      
Sbjct: 416 LNQIIEDLLTLSRIEQEEEEGKVTLTWKP--LKTVLQAAIQVCEVRAAEKQITISLSCPD 473

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +L     +   + + ++NL+ NA+K++     V VT    +     I ++D G GIA   
Sbjct: 474 NL-QARINPPLLEEAVVNLIDNAIKYSPPETAVAVTAEP-ATEKVLIRVRDQGRGIALEH 531

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P +   F +   +      G GLGL I + I   H G   + S L +G      LP +
Sbjct: 532 LPRLFERFYRVDTSRSRKVGGTGLGLAIVKHIAQAHDGWVTVDSTLGQGSVFTLHLPLS 590


>gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum
           gilvum SL003B-26A1]
 gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum
           gilvum SL003B-26A1]
          Length = 807

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  +  E+ +  K+ F+  +S+ELR+PL  I+GF++++     G L+     EY 
Sbjct: 558 ERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIGFAQLLSDPKFGELSR-KQGEYA 616

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   LL +IN+ILDL+ I+AG  EL    + + D V   +  L+ R  +  I + 
Sbjct: 617 DYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVADTVAAAVEGLKDRLADAKIVLR 676

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +   + +++ADE+ +RQV+ NL++NAV+++  GG + VT G         ++KD+G G
Sbjct: 677 THVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVIDVTCGR-KDGAVVFTVKDHGCG 735

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +  I  V + F       K    G GLGL I +S +  HGGQ  I+S+   G  V   
Sbjct: 736 IPQEMIDQVFSRFVGHDAGTKRR--GAGLGLSIVKSFVELHGGQVEIQSREGVGTTVTCT 793

Query: 472 LPN 474
            P 
Sbjct: 794 FPA 796


>gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
 gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
          Length = 771

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 155/327 (47%), Gaps = 11/327 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P   A++                +      F+  +           L   ++    I + 
Sbjct: 321 PQHPAMALDEATRHGHYMEEGWRLRQDGTRFWASVVITAQFDATGALRGFSKITRDITDR 380

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A+      R+ AE  + AKS FL+ MSHELRTPLN+ILGF++++++++ G       K
Sbjct: 381 RAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSAGG-----QK 435

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            ++G I R+GQHLL LINE+LD+++IEAGR  L+   I L   ++E + ++   A +  I
Sbjct: 436 AHVGHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLAGALQEALALVSPMAADAGI 495

Query: 349 EIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           ++       +   + AD + + QV+LNLLSNA+K+    G+V + V    G    +++ D
Sbjct: 496 QLQPLPALAADIGIAADPQRLTQVLLNLLSNAIKYNQPQGQVSIEVK-VEGPRIGVAVCD 554

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   ++  +   F +         +G GLGL +++S++    GQ  + ++   G  
Sbjct: 555 TGKGIPADKLGQLFKPFERLGA--DPNVEGSGLGLALSKSLLEKMDGQLSVHTQQGIGSR 612

Query: 468 VIAILPNTRVLNF--IPEDNHESTQYK 492
               LP   V     +P    ++   +
Sbjct: 613 FTLELPFMSVQASNGLPAAVADTVSIR 639


>gi|218903110|ref|YP_002450944.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218540075|gb|ACK92473.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 253

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 21  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 77

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 78  RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 135

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D+G GI+E +   
Sbjct: 136 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDSGIGISEEQKQH 194

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 195 IFERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 248


>gi|282882283|ref|ZP_06290915.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297877|gb|EFA90341.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
          Length = 581

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             ++ +  F+A++SHEL+TP+  I  ++E +     G    E    ++  I R    +  
Sbjct: 345 RLDVLRKEFVANVSHELKTPITTIGSYTETLLNGVAG----EDINHFLKVIERENARMAR 400

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L LS I+  +  L++ +    + + E +    L   +K+  I   +   + ++++
Sbjct: 401 LVSDLLVLSNIDYKKEHLNKESFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYS 460

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTV 420
           D  G  Q+++N++SNA+K+T  GG++ +              IS+KDNG GI + ++P +
Sbjct: 461 DRHGASQILINIISNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMI 520

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +          G GLGL IA  ++ + GG   I S L  G  V    P 
Sbjct: 521 FERFYRVEKGRSREMGGTGLGLSIANEMIKSLGGSIKISSTLNVGTNVELFFPA 574


>gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 867

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           L D +R+R  E +L K+ F+++ +HELRTPL +++GFSEV+  +       E   E++  
Sbjct: 623 LRDISRER--ELDLMKTEFISTAAHELRTPLTSVIGFSEVMLQQGG---LTEQQTEFLSI 677

Query: 294 IHRSGQHLLNLINEILDLSRIEAGR-YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           IH+  + L  ++ ++LDL+R++ G+   L +    +  I+   +   +   Q+       
Sbjct: 678 IHKKAEVLGKIVEDLLDLARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDH--RFKT 735

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
            +  +   +  D++ + QV+ NLLSNAVKF+ +   + VT    +    YI++ D G G+
Sbjct: 736 VLPDAPIEMLVDDRKLFQVMENLLSNAVKFSPVDSLIQVTCQL-ADNELYIAVSDQGIGM 794

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +I  +   F +   +  +A +G+GLG+ I +SI+  H G+  + SK   G  V   L
Sbjct: 795 QPAQIDRMFDKFYRVDAS-NTAREGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVTFTL 853

Query: 473 PNTRVLNFIPEDN 485
           P T  L   P   
Sbjct: 854 PYTDNLESHPSPT 866


>gi|83954248|ref|ZP_00962968.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
 gi|83841285|gb|EAP80455.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
          Length = 669

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 126/264 (47%), Gaps = 27/264 (10%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE-------- 285
                ++ AE  +  K+ FL ++SHELRTPL  I G S  +      P            
Sbjct: 398 AEKRAQEAAEAADREKTEFLNNVSHELRTPLTVIFGRSSFMRHSDKMPQAQRLMSALTAD 457

Query: 286 ------------TYKEYIGD----IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
                        Y+++I D    I  S QH++ L+ ++LD +++  G+ EL  +   L 
Sbjct: 458 GSGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLD 517

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           +I R     LQ  A+ K + +    D   ++V AD+  ++Q++ NL++NA+KFT+  G++
Sbjct: 518 EIARTVTQELQPAAEAKGLTLTYAGDGPAATV-ADKVRVKQILYNLITNAIKFTSE-GKI 575

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           H+++   S      S+ D G GIAE +   V   F Q   ++     G+GLGL I++ + 
Sbjct: 576 HLSM-LHSTDEIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLA 634

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             HGG   + SKL  G      LP
Sbjct: 635 ELHGGSLSLESKLGVGSTFSLTLP 658


>gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 956

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA++SHELRTPL  I+G  ++++ + +     +     +  ++ S   LL +I++I
Sbjct: 472 KSMFLATVSHELRTPLYGIIGNLDLLQTKAL----PQGVDRLVNAMNNSSGLLLKIISDI 527

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
           LD S+IE+ + ++     S ++++            +K + ++  I+ ++   +  D   
Sbjct: 528 LDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRLGLYCFIEQNVPERISGDPVR 587

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           ++QV+ NLL+NA+KFT   G + + V  T       S++D G GI E EI  +   F Q 
Sbjct: 588 LQQVLSNLLNNAIKFTDT-GCIILQVC-TRSSYLEFSVRDTGVGIPEKEITRLFDPFFQV 645

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              ++   QG GLGL I + ++    G   + S+   G      +P       IP+ + 
Sbjct: 646 GSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSLFTIRIPLFNAQFPIPQASD 704


>gi|161521754|ref|YP_001585181.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352083|ref|YP_001947710.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345804|gb|ABX18889.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336105|dbj|BAG45174.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1029

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/491 (19%), Positives = 160/491 (32%), Gaps = 37/491 (7%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVS------PILPLFVLLVANIGTWFTQN 69
           ++   + L    P     D  I  L    + R              V+    +       
Sbjct: 273 VTTADNRLVTAGPGVAHDDARIARLLALDVAREPGDADEPVFRGGHVVFRGTLDKTGWTL 332

Query: 70  PIFPMWSLITLAVYA--------------ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
                W+ I   V                    L  +  +  +        R++      
Sbjct: 333 AYALSWTHIVATVALRAGLLLGASLLTIAIMWILLVRFHHRVLTGVYARSQRVFDSESLC 392

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
              +  + + L         ++ +       +A                           
Sbjct: 393 RSVIEMSPIGLGLISRADGRFMLVSPVLAERVARLGCDCGTLSAQILAQYRAGASNAPFQ 452

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            + ++                        Y      +  +     K  L+ +        
Sbjct: 453 IELVLPDAQAAAGADAPPLHLEVIARDARYQASDVLIVAVVDVTAKRQLVQK-------L 505

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +E  + A+  N AKS FLA+MSHE+RTPLN ILG  E++E  T+        +  +  + 
Sbjct: 506 EEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERSTLDLP----QRSRVQTLR 561

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +   LL L++ ILD +++EAG   +       I ++   +      A+ K + +F +I 
Sbjct: 562 NAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCEIA 621

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410
            S S  +  D   + QV  NLLSNA+KFT   G V   V    G        I+I+D G 
Sbjct: 622 ASASQRMRGDPTRLAQVFGNLLSNAIKFT-AHGHVTARVRAVRGECGTAELAIAIEDTGI 680

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++  +  +F Q    I     G GLGL +   ++   GG+  + S    G     
Sbjct: 681 GIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFTV 740

Query: 471 ILPNTRVLNFI 481
            LP    +  I
Sbjct: 741 RLPLGLDVEPI 751


>gi|156742976|ref|YP_001433105.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234304|gb|ABU59087.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 509

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 18/344 (5%)

Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202
             +L      A   + L    +      VV L   A     +   +   +   A +  + 
Sbjct: 161 VGVLQVARSMAEIQYALRLLFYALTVGGVVVLLAAARGGAWLTRAAFRPIDEIAQTAQSI 220

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +        + +     E   L   +    +       R EE    + RF+A +SHELRT
Sbjct: 221 VRAEDLSRRIPVPPAADELQRLTITVNDLLA-------RLEELFNHQRRFIADVSHELRT 273

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL A+ G  EV+        + +   E + D+ R    L+ ++N++L L+R +AG  ++ 
Sbjct: 274 PLTAMQGNLEVLARGA--ARDPQLLNESLDDMRREVARLIRMVNDLLLLARSDAG-IQIR 330

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              + L  ++ E    L+  A +  + I    +   + V  D   ++Q +LNL  NA++ 
Sbjct: 331 RDPVELDTLLLETHRELRPLAGQVQLRI---GEEDQAVVIGDRDRIKQALLNLGINAIQH 387

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T  GG V +++         +S+ D G GIA  ++P +   F +   +      G GLGL
Sbjct: 388 TPPGGVVTLSLTIR-DGHAALSVADTGYGIAPQDLPHIFERFYRADQSRCHNGGGAGLGL 446

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
            I +S++  HGG+ L+ S+  +G     +LP    L+  PE N 
Sbjct: 447 SIVRSVVEAHGGKVLVSSEPGKGSVFTMLLP----LDSQPEVND 486


>gi|258512528|ref|YP_003185962.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479254|gb|ACV59573.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 429

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TP+ AI GF+E +     G ++ E  ++++  I+    
Sbjct: 198 RRLE---RMRSDFVANVSHELKTPIAAIRGFAETLLD---GDVDEEAREKFLRTIYEESL 251

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            + NL++++L+LS++EA    +   A+ L +++   +  ++  A EK I I    +  L 
Sbjct: 252 RMGNLVSDLLELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL- 310

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            VWA+   + QV LNLL+NA+ ++    RV VT      R   + +KDNG GI +  +P 
Sbjct: 311 HVWAEPDLLLQVFLNLLTNAIHYSPPKSRVCVTWDVLVDR-VKVHVKDNGIGIPKESLPR 369

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           V   F +       A  G GLGL I + I+   GG+  + S+  +G +    L
Sbjct: 370 VFERFYRVHKDRSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422


>gi|182413537|ref|YP_001818603.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840751|gb|ACB75003.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1257

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/293 (30%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 191  GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
              L   +     + + +     +    +A      AEL+ +       R  AE  N AKS
Sbjct: 750  VGLFGLVGVVIVVGWRIRTLRRRGAELEAIVARRTAELQASNEQLAVARDAAEAANRAKS 809

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA MSHELRTPLN +LG+++V+      P      +E +  I +SG+HLL LINE+LD
Sbjct: 810  TFLAHMSHELRTPLNGVLGYAQVLAR---DPAQPPAARERLQIIIQSGEHLLALINEVLD 866

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
            L+R+EAG+ +L  +  +L  +V     +++   +   +     +   L   V  DE+ +R
Sbjct: 867  LARVEAGKMQLRPTTCALPRLVESVADLMRAPCEAAGLGFACAVAAGLPRLVRTDEQKLR 926

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            QV+LNL+ NAVKF    G V + V           + D G GIA   + T+   F   + 
Sbjct: 927  QVLLNLVGNAVKFA-RHGAVRLAVAPLPDGRVRFEVSDTGVGIAPERLATLFQPF---AT 982

Query: 430  AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            + +   +G GLGL +++S++   GG+ L  S+  EG      LP     +  P
Sbjct: 983  SAEHGARGTGLGLALSRSMVELLGGRLLAESRPGEGARFWFDLPLPEAASDAP 1035


>gi|312886740|ref|ZP_07746347.1| two component transcriptional regulator, AraC family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300842|gb|EFQ77904.1| two component transcriptional regulator, AraC family
           [Mucilaginibacter paludis DSM 18603]
          Length = 914

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 9/286 (3%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +  +    L          F S ++        +    E+   ++   E   +AE    
Sbjct: 336 LVLNVTVITLVLAVVFGGLAFYSLLENRKINKSLEHKNLEILKQRNQLIEMSAKAEVATE 395

Query: 248 AKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           AK  F  ++SHE RTPL  IL   E +I+ E +  +  +     +  IH++   LL L+N
Sbjct: 396 AKLNFFTNISHEFRTPLTLILSPLEDLIQQEKIKTIAGKN----LKLIHKNVYRLLRLVN 451

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++++  +IE  + ++S S  +L + V++ I   +  A ++NI++    +      W DE 
Sbjct: 452 QLIEYRKIEYEKLQISASPNNLYEFVKDVIDSFRHNASKRNIDLRLISEEQQIEAWFDEN 511

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + +V+ NLLSNA+KFT   GR+H+ +   +    +IS++DNG GI+E E   V   F Q
Sbjct: 512 MLDKVLFNLLSNALKFTNDNGRIHIRLEQ-NSDRIFISVQDNGIGISEEEARHVFDHFYQ 570

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                 ++ +G GLGL +++ +M  H G   + SK  +G      L
Sbjct: 571 AD---TNSTKGSGLGLSLSKELMLLHHGDIEVNSKKWQGTTFRVTL 613


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+  EE   AK +F  ++SHELRTPL  I   ++ +         N   +  +  + R+ 
Sbjct: 362 RRIEEEAIKAKLQFFTNISHELRTPLTLI---ADPVNYIIHDDNLNTQQRSMLQIVQRNV 418

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L  L++EILD  ++++G+ EL  S  +L + +++ I +    AQ+K+I I     P  
Sbjct: 419 LVLTQLVSEILDFRKVQSGKMELRLSDFNLTENMKQWITLFSASAQKKHITISLD-APDT 477

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   + ++  NLLSNA+K+TA GG++ +           IS+ DNG GIA  E+P
Sbjct: 478 IMLRADHDKIERICYNLLSNALKYTAEGGKISLKA-IKKDERVIISVTDNGCGIASDELP 536

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F Q   A +    G G+GL I ++    H G+    SKL +G      +P  +
Sbjct: 537 YIFNRFYQAKNAGR----GTGIGLAIVKAFTELHHGEVSATSKLGKGSTFTINIPVKQ 590


>gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 690

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 12/247 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHE+RTPLN ++  +  ++   +         E +  I RSG+ L  L+++I
Sbjct: 321 KNDFLANMSHEIRTPLNGVIALAAALDETPLTS----KQAEMVAMIRRSGETLERLVSDI 376

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD+S+IEAG+  L   A  L  +V   + + +LRA+EK + +  +  P+ +     D   
Sbjct: 377 LDVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRAKEKGVAVRLERSPTAAGGFLGDSVR 436

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422
           + QV+ NL SNAVKFT   G V V V             ++ ++D G G    +   +  
Sbjct: 437 IGQVLSNLFSNAVKFTDQ-GEVIVRVDVEEAGNGQAARLFVEVEDTGVGFDAEKAEMIFQ 495

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q    I     G GLGL I+++++   GG+   +S    G      LP +R     P
Sbjct: 496 RFNQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQSSPGAGSLFRVTLPLSRT-QMGP 554

Query: 483 EDNHEST 489
           +   ++ 
Sbjct: 555 DAEIDAP 561


>gi|330832446|ref|YP_004401271.1| sensor histidine kinase [Streptococcus suis ST3]
 gi|329306669|gb|AEB81085.1| sensor histidine kinase [Streptococcus suis ST3]
          Length = 449

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
            ++E   +   + V   ++++ ++        +  F++++SHELRTPL ++  + E ++ 
Sbjct: 182 IRSESGLISGLVVVLHDMTEQAKEE-----RERRLFVSNVSHELRTPLTSVKSYLEALDE 236

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
             +      +   ++         ++ +I ++L LSRI+    ++    I+    V   +
Sbjct: 237 GALTESVAPS---FVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFIL 293

Query: 337 IMLQLRAQEKN---IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                     +     I +    S   V  D   M QV+ N+L+NA+K++  GG +  ++
Sbjct: 294 NRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSM 353

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             T  +   +S+ D G GI + ++P +   F +   A   A+ G GLGL IA+ I+  H 
Sbjct: 354 KTTDSQ-LIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
           G    +S+   G     +LP ++ +
Sbjct: 413 GFIWAKSEYGHGSTFTIVLPYSKDI 437


>gi|328874987|gb|EGG23352.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1142

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 16/263 (6%)

Query: 230 VAKSLSDETRKRAEEENLAKSRF-LASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             K + +E+R   +E+ L KSR  L+ MSH++RTP++ I+G ++++    + P      +
Sbjct: 500 TQKRIDEESRTIEQEKTLEKSRLRLSMMSHDIRTPMSGIIGMTDLLSETDLHP----QQR 555

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  S   LL +IN++LD+S+IEAG++E+        D V E   ++  RAQ K +
Sbjct: 556 HYLDIIKVSSNSLLTIINDLLDISKIEAGKFEVDNIEFDFRDAVEEVCELMGERAQAKGL 615

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYI 403
           ++   + P +   +  D   ++Q++ NLL N+VKFT I G + +               I
Sbjct: 616 DLICSVHPLVPQKLIGDASRLKQILTNLLGNSVKFTDI-GDIIIACTLQHIDQDDVDIRI 674

Query: 404 SIKDNGPGIAEGEIPTVLTSF---GQGSIA-IKSAEQGVGLGLPIAQSIMAN-HGGQFLI 458
            +KD G GI +  +P +  +F    Q     I     G GLGL I + +      G+  +
Sbjct: 675 EVKDTGIGIKKEALPLLFKAFTSAWQAEGGNITRQYAGSGLGLAICKELAQLAFNGEIGV 734

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S+   G      L    V + I
Sbjct: 735 ESQYGVGSTFWTHLHFKPVQSTI 757


>gi|238763419|ref|ZP_04624382.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238763500|ref|ZP_04624462.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698282|gb|EEP91037.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698363|gb|EEP91117.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
          Length = 1189

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         + 
Sbjct: 626 ISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSDQ 680

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  + +S Q L+ L+++I+D ++IEAG+  +  + +     +     + Q  A 
Sbjct: 681 PVDKNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQPIAD 740

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+N+     +D  +   V  D   +RQV+ NLL NA+KFT  GG V V + W S   ++ 
Sbjct: 741 ERNLRFSGWLDDHIPDLVMVDMLRVRQVMGNLLGNALKFTEQGG-VSVDITWESIDEKHG 799

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 800 IMNIDITDTGIGISPAAQATLFQPFSQANEGTSPRFGGSGLGLWICHQLIHKMGGEITLE 859

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDNH 486
           S+L +G  +   LP        +P D+ 
Sbjct: 860 SQLGKGTSLFITLPLEIATASDLPPDST 887


>gi|229135508|ref|ZP_04264294.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
 gi|228647973|gb|EEL04022.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
          Length = 484

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPL 282
                 +E RK+ +     +++        ++++SH+L+TP+ +I+G+ E I+       
Sbjct: 229 QLNQGFEEMRKKLKGSIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGV--AN 286

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  IH   +H+  LI+E+   S+++  R       I L   ++E +  +Q+ 
Sbjct: 287 TPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMD 346

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401
             E  IE++ ++  S   V AD + + +VI NL+ N+VK+      ++ VTV  +     
Sbjct: 347 LSEGGIEVYLQLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEAKKITVTV-LSDNNKV 405

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + DNG GI    +P +   F +   +  S+  G GLGL IA+ I+  HGG+    SK
Sbjct: 406 IVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESK 465

Query: 462 LREGVEVIAIL 472
           L EG  +   L
Sbjct: 466 LGEGTSIFFSL 476


>gi|255534130|ref|YP_003094502.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347114|gb|ACU06440.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 374

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 11/254 (4%)

Query: 229 EVAKSLSDET--RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E+ K+L DE   RK AE     K  F++  SHEL+TPL ++ G+ +++        +  T
Sbjct: 129 EIQKALLDEIEFRKMAE---RKKDEFISIASHELKTPLTSVKGYVQLLGRSV-DKGDIPT 184

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            K+++       + L  LI ++LD+S+IE+G+ + ++    L  ++   + ++       
Sbjct: 185 VKKHLAKAQVQLEKLNELIADLLDISKIESGKLKFNKKYFVLDALLDGVLEVIHQANPTF 244

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           NI    +   +   ++ADE  + QVI+N L+NA+K++     + V V        Y+ ++
Sbjct: 245 NI---IRKGNAPQEIYADEMRIEQVIVNFLTNAIKYSPGTNEIEVNVK-VGEGQLYLGVR 300

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA      V   F +         QG+G+GL I+  I+  HGG+  ++SK  EG 
Sbjct: 301 DFGIGIAPELQKNVFEKFYRVEE-TAIHFQGLGIGLYISAEIINRHGGEVGVKSKPGEGS 359

Query: 467 EVIAILPNTRVLNF 480
           E    LP   V   
Sbjct: 360 EFYFTLPLNAVPEA 373


>gi|163842855|ref|YP_001627259.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
 gi|163673578|gb|ABY37689.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
          Length = 609

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL S
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAS 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|298246095|ref|ZP_06969901.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553576|gb|EFH87441.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 509

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 16/344 (4%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
           +  ++  +  +L   S + + +  +     L    + + L   A++++ ++  +L  +  
Sbjct: 166 DKQSMAYAGGILQLQSSTTVIDSAVSSTRLLLLIAITIGLLVAALLTLPLIRHALRPLAE 225

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
              +        L +     LS    +D+L        S+      R E     + +F+A
Sbjct: 226 IERASMRIAGGDLTQ----RLSEPPTQDELGRLATAFNSMV----IRLEHMFARQKQFVA 277

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +SHELRTPL  + G  E++ LE          +  +G ++   + +  L+ ++L LSR+
Sbjct: 278 DVSHELRTPLTGLGGSLEMLLLEADNGDAVAKRRLMLG-MYNEVERMQRLVADLLVLSRL 336

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           + G+ +L ++ I L  ++        + AQ     I   +     S+  D   +R+V LN
Sbjct: 337 DEGQVKLRKTHIDLCQLLTNVKEQADILAQ--GQHITLDLPKQPLSIEGDSDQLRRVFLN 394

Query: 375 LLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L+ NA+KFT  GG + +             +I I D G GI    +P +   F +   A 
Sbjct: 395 LIENAIKFTPPGGDITLRALGKQCEDCSLAFIEITDTGLGIPASALPHIFDRFYRVDQAR 454

Query: 432 KS--AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               A+ G GLGL IAQ ++  HGG   + S   +G  +    P
Sbjct: 455 TRTTAQSGSGLGLSIAQGLVHAHGGTITLTSTPNQGTTITLQFP 498


>gi|330960502|gb|EGH60762.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 783

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNQLENIVSARTNELKASNMRLRQSNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGALIEDTANLLSQNAAPSVELTCLIAPDFPALVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +       +      I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHLDSTSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAEAAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL +  ++     GQ  I+S+   G +  A LP    L  +
Sbjct: 480 GTGLGLALTNNLCEAMNGQLSIQSQSGFGSQFCAELPLPINLPAV 524


>gi|297530123|ref|YP_003671398.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297253375|gb|ADI26821.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 11/304 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + +   ++    +     +  +   L      T  L + +  +       D+L      
Sbjct: 162 FIVVGVLSVAITVLTIAFFSRAITMPLLRMKQATEALSRGDFSVRLEMKGNDELAQLGRA 221

Query: 231 AKSLS-DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++L+ D    +       +S FLAS+SHELRTPL  + G++++        L+ E    
Sbjct: 222 IQTLANDLAYLK-----QERSEFLASISHELRTPLTYVKGYADIARR---PHLSEEQRAN 273

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I+   + +  ++ ++ +L+++E   +++ +   +L   + +    L+   QEK++ 
Sbjct: 274 YMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLS 333

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +  P       D +   QV++N+L NA K+   G  V V V     +G  I++ D G
Sbjct: 334 LVCQC-PGSVMAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQK-QGIVIAVSDEG 391

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++P +   F +   +      G GLGL IA+ I+  HGG    RS+  +G  +I
Sbjct: 392 TGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTII 451

Query: 470 AILP 473
             LP
Sbjct: 452 MTLP 455


>gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 772

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 123/254 (48%), Gaps = 8/254 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 268 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 323

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 324 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPL 383

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V + +  G   +  ++D+G GI + E 
Sbjct: 384 PHKVVTDGTRLRQILWNLISNAVKFTQK-GQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQ 442

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S+  +G      +    
Sbjct: 443 DKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLTVHAPA 502

Query: 477 VLNFIPEDNHESTQ 490
           V   + ED  E+  
Sbjct: 503 VAEEV-EDTFENDD 515


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 122/263 (46%), Gaps = 17/263 (6%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D ++     ++    +++ AE  ++AK++FLA++SHELRTPLN I+G ++++        
Sbjct: 259 DDVSAQRRLEAELRASKQAAEAASVAKTQFLANISHELRTPLNGIMGLTQLMLDGV---- 314

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++  +EY+G I +S   L++++ ++LDLS +EAGR  L          +   +     +
Sbjct: 315 ADDETQEYLGIIRQSASILMHIVGDLLDLSNVEAGRLMLVMREFDPQAELLPLLRNFSTQ 374

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400
           +  +        DP L   +  D   ++Q+ +NL+ NA K+T  G   V + +    G  
Sbjct: 375 SMLRPFSFGYHFDPLLPARLIGDPNRIKQICINLIDNAFKYTKKGTVSVRIGLWENPGNE 434

Query: 401 -----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                       +I++ D G GI       +   FG G   +     G GLGL +A+ + 
Sbjct: 435 PPPDVAPERIRLHIAVSDTGVGIEPSRQSAIFEPFGIGEDYLTKKYSGAGLGLTVARRLA 494

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
              GG   + S+  +G      L
Sbjct: 495 GMMGGDITVESEPGQGSTFYLTL 517


>gi|295132378|ref|YP_003583054.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294980393|gb|ADF50858.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 341

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 125/262 (47%), Gaps = 8/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAE----EENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           D+ +     +  ++  +   E     EN  K  F+ ++SHEL+TPL  + G+   +    
Sbjct: 72  DMASLTREVEKFAEHKKLEIETLKVRENYRK-EFMGNVSHELKTPLFTVQGYILTLLDGA 130

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           M   +    K+Y+    +  + L+ ++ ++  ++++E G   L      ++++++    +
Sbjct: 131 M--KDKSVRKKYLQRASKGVERLIYIVKDLDMITKLETGDLHLYIEDFDIVELIQNTFDL 188

Query: 339 LQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           L+++A +KNI +   +D      V ADE+ ++QVI NL+ N++K+   GG   +++    
Sbjct: 189 LEMKAAKKNITLTFDMDYQEAIWVRADEERIQQVITNLVVNSIKYGKEGGTTEISIENLI 248

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                + + DNG GIA+  IP +   F +   +    E G GLGL I + I+  H  +  
Sbjct: 249 KNKVIVRVTDNGEGIAKTNIPRLFERFYRVDKSGSRKEGGSGLGLSIVKHIIEAHSEKIY 308

Query: 458 IRSKLREGVEVIAILPNTRVLN 479
           + S    G E    L  ++ + 
Sbjct: 309 VESVFGVGSEFSFTLEKSKEIP 330


>gi|161830507|ref|YP_001596306.1| hypothetical protein COXBURSA331_A0472 [Coxiella burnetii RSA 331]
 gi|161762374|gb|ABX78016.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 331]
          Length = 252

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 120/237 (50%), Gaps = 5/237 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+   +    +S F+A++SHELRTPL  I G+ E +  + +   ++++Y++    +++  
Sbjct: 18  REHINQLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEV--RDSKSYQKIFQQMYQHS 75

Query: 299 QHLLNLINEILDLSRIEAGRYELSES-AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             +  +I+++L LSR+E+  +   E   +++ +I++      +  + EK   I  K +P+
Sbjct: 76  TRMETIIDDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPN 135

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  +   E+ ++ +  N++ N+VK+T   GR++V   +        S+ D G GIA+  I
Sbjct: 136 L-YISGSEEELKSLFSNIIINSVKYTPSKGRINVK-WYRDDDHAVFSVVDTGIGIAKVHI 193

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           P +   F +   A      G GLGL I + ++  H G+  I S+  +G       P 
Sbjct: 194 PRITERFYRVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFPL 250


>gi|71083870|ref|YP_266590.1| phosphate regulon [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062983|gb|AAZ21986.1| phosphate regulon [Candidatus Pelagibacter ubique HTCC1062]
          Length = 347

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 2/226 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS F+A++SHELRTPL +I    E I        + E  K+++  + +  + + NLIN++
Sbjct: 123 KSDFVANVSHELRTPLQSIKLGLETINDG-HASNDFEMQKKFLPIMMQQTERMENLINDL 181

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L LS+IE   +    + + L +I+   I +     ++K I+I   I      +  D   +
Sbjct: 182 LSLSKIELQEHIRPTTELDLKEIITHVIKLNSELVKKKKIKIENNITDDTYKISGDRNRL 241

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            ++  NL+ NA K++     + +++          SIKD G GI +  +  +   F +  
Sbjct: 242 IEIFTNLIDNACKYSDSDTVIKISL-VKKMDTILFSIKDQGVGIPKKYLSRITERFFRVD 300

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            A      G GLGL I + I+  H     I S   +G E     P 
Sbjct: 301 PARSKDAGGTGLGLAIVKHIVNQHRATMDIISTEGKGTEFTIEFPK 346


>gi|117923522|ref|YP_864139.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607278|gb|ABK42733.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 771

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 11/269 (4%)

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            + +   A+    +  ++A+  + AK  FLA+MSHE+RTPL+ I+G S  +    +    
Sbjct: 366 FVYKRAEAEQALSQAVEQAQRADRAKGIFLATMSHEIRTPLHGIIGTSRQLNRMPL---- 421

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           +         I ++ Q LL ++N++LD S+I+  +  L E    L  +++E   ++  +A
Sbjct: 422 DRQVAHKAQVIEQASQALLGILNDVLDFSKIDTEQLVLEEVVFDLPRMLQELYAVVHSQA 481

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           +EK +++  ++   L      D+  +RQ++ NLLSNA+KFT   G V + V  T      
Sbjct: 482 EEKGLQLHLQLQEPLPRACRGDQTRLRQILNNLLSNAIKFTQQ-GEVTLQVALTGETDPA 540

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GI E  +  +   F Q   +I     G GLGL I+  +    GG    
Sbjct: 541 PWVAFAVADTGIGIDEAHLERLFEPFKQMDESINRRFGGTGLGLAISAKLAEAMGGSIRA 600

Query: 459 RSKLREGVEVIAILPNTRV-LNFIPEDNH 486
           + +   G     ++P  +V +  +P+   
Sbjct: 601 KRRTEGGSLFTLMIPLRQVPIEQLPKPAQ 629


>gi|330958947|gb|EGH59207.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 1186

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 18/271 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 675 ISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 734

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +    + +    A
Sbjct: 735 RPA----IEVAYGSANELLDLIGDILDIARIESGRLALNPERANLRQLAESVVRVFDGLA 790

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399
           ++K++++  ++D  + + V  D    +Q++ NL+SNA+KFT   G+V +++         
Sbjct: 791 RQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFT-RCGQVKISLQAPDTPDPQ 849

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               +++++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   
Sbjct: 850 QLHVHLTVQDSGIGISVEDQRRLFEPFAQADNTGQMARTGAGLGLVICRSLCTMMGGSLS 909

Query: 458 IRSKLREGVEVIAIL------PNTRVLNFIP 482
           + S+   G  +   L      P       +P
Sbjct: 910 LDSEPGIGTRINMQLMLTTLEPLASQPVALP 940


>gi|309790681|ref|ZP_07685232.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
 gi|308227275|gb|EFO80952.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
          Length = 409

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 125/268 (46%), Gaps = 4/268 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           + K   K+   +     L   ++   +      +R  E N  K   L   SH+LR+PL  
Sbjct: 144 IDKLAEKVNELETLNASLEQRVQERTTELAAANERLRELNAFKDNLLMIASHDLRSPLGI 203

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I   + +I      P   ET +  +  I  S + L +L+ +ILD+S +EAG+  L    I
Sbjct: 204 IQNIAGLILDN---PATPETTRRAVQTIMSSAEQLNSLVADILDISSLEAGKVVLEPIII 260

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            +  IV + I  L+  A+ K I +  ++ P+   V AD   + QV  NL+ NA+KFT  G
Sbjct: 261 QVGFIVEQVIENLRYSAEAKQIHLSLEVSPTNLVVLADWHKLSQVFSNLIGNAIKFTPPG 320

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G + VT+    G      + DNG GI    IP +   F +      + E+G GLGL I Q
Sbjct: 321 GWIAVTIKP-EGEHICCEVADNGLGIPGEAIPHIFEKFQRAHPTGTNNERGSGLGLAIVQ 379

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++  HGG+  + S++ +G      LP 
Sbjct: 380 QLVELHGGKIEVHSQVGQGSRFRVYLPA 407


>gi|239623827|ref|ZP_04666858.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521858|gb|EEQ61724.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1233

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 133/271 (49%), Gaps = 14/271 (5%)

Query: 209  KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +++  +   +A+  D++AE    K   +E    A E + AKS FL++MSH++RTP+NAI+
Sbjct: 810  ENHRTVCLVRADVTDMLAEERRRKKALEEALAVAREASQAKSDFLSTMSHDIRTPMNAIM 869

Query: 269  GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
            G + V+    +     E   + +  I  S  HLL+LIN+ILD+++IE  +  L+   IS+
Sbjct: 870  GMT-VLAKAHLDER--ERVADCLQKISVSSSHLLSLINDILDMNKIEQSKISLNHMKISM 926

Query: 329  IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
              ++ +   +++ +A+   +    +         + D   + Q+++NLLSNAVKFT  GG
Sbjct: 927  SGLLEKLSDIMEPQAKASGLRFTIQSRGIEHGYYYGDSLRINQILINLLSNAVKFTPEGG 986

Query: 388  RVHVTVGW----TSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V                    +++D G G+ E  +  +   F +      +  +G GLG
Sbjct: 987  SVEFLAEEITPIRPQGYARYRFTVRDTGIGMGEEFLSHIFEPFTR----NTARVEGTGLG 1042

Query: 442  LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            L I + ++   GG   + S++ +G      L
Sbjct: 1043 LSITKGLVDLMGGYIGVESRIHKGTTFRVEL 1073


>gi|313884490|ref|ZP_07818251.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620274|gb|EFR31702.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 575

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           ++ F+A+ SHELRTP+ AI GF+E +    +   + +  K+++  I +    L  +I++I
Sbjct: 351 RTEFVANASHELRTPVTAIKGFAETLLDGALS--DPDMTKQFVEIIAKESNRLEVIIHDI 408

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           L+LSR+E          + L+   +  + + +  +Q+KNI +    +     + +++  +
Sbjct: 409 LELSRVEKNSEPWETQLLDLVATGKAVLQLFKQASQQKNIRMNFSSNIDQLMIDSNKHRL 468

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            Q+++NL+ NA+ ++  GG + + V     +G  I + D G GI E +   +   F +  
Sbjct: 469 EQIMINLIDNAINYSDFGGEILLAVEKVK-QGALIQVSDKGIGIPEADQSRIFERFYRVD 527

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                   G GLGL I  +++    G   + S   +G      +P
Sbjct: 528 KDRSRNSGGTGLGLSIVNNLVRIMEGNIQVTSVEGQGTTFKIFIP 572


>gi|330502139|ref|YP_004379008.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328916425|gb|AEB57256.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 971

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 3/299 (1%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
            +       L +         A     I  L+  +         A   + AKSRFL+SMS
Sbjct: 553 LWLLSRGKVLLRDENGWPLRIAGTHVDITRLKQVEDDLRHASLEALAASQAKSRFLSSMS 612

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLNAI GF+++IE+E     + +   +Y  +I  + +HL +L+++ILDLS IE+ 
Sbjct: 613 HELRTPLNAIHGFAQLIEMEAQDKHDAKLEADYSREIVNASRHLTSLVDDILDLSSIESR 672

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376
           R +L    I +  ++  C  ++Q   Q+K +++           V  D + +RQ++LNLL
Sbjct: 673 RQQLQFQPIEIGALLTGCAELVQPEVQQKQLQLQVMEAADPPLFVQGDPRRVRQILLNLL 732

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+K+ +  G + +     +     + + D GPG++  ++  +   F +      S   
Sbjct: 733 SNAIKYNSPRGTIRMGYEVRAD-CVRLWVDDTGPGLSSEQLAQLFQPFQRLGR-ESSNIP 790

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           G G+GL + + +     G+  +RS+   G      +P+      + ++  +  +    +
Sbjct: 791 GTGIGLVLCRELATLMDGEIGVRSEPGVGSRFWLDIPSAASPEGLRDEAADVPEQAARS 849


>gi|258513937|ref|YP_003190159.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777642|gb|ACV61536.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 766

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA+MSHE+RTPLN ++G    +   T+        KE +         L+N++N+IL
Sbjct: 301 SEFLANMSHEIRTPLNGLIG----MLDLTLLSDLTVDQKENLSIARTCVDSLMNVLNDIL 356

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S+IEAG+  +     +L ++V + +     +A EK+I I   +   +   +  D   +
Sbjct: 357 DFSKIEAGKLLIENVGFNLPELVEKTVKSYSAKASEKDIGIKYSVCSDVPETLSGDPNRL 416

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSF 424
           RQV+ NLL NA+KFT   G V + V       +Y++    + D G GI+  +   +   F
Sbjct: 417 RQVLNNLLGNAIKFT-QIGSVGIEVELLEKTREYVTLKFIVTDTGIGISASDREKLFQGF 475

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            Q   +      G GLGL I++ ++    GQ  + S    G + I  
Sbjct: 476 SQVDGSYTRKYGGTGLGLAISKQLIEKMDGQIWVESNNHGGSKFIFT 522


>gi|162455110|ref|YP_001617476.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161165692|emb|CAN96997.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2073

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 169/369 (45%), Gaps = 16/369 (4%)

Query: 122  TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             L   +      P  +  Y + T    ++  A S+       +L+   V+  L+      
Sbjct: 1475 GLSEPLGQSHDVPVAVVQYAARTGEPVVTGDARSDARFAGDPYLALHAVLSLLALPLTHR 1534

Query: 182  MHVLDISLA----GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             HV+ +          A   +    ++    ++ + + +    +D  +   E   +    
Sbjct: 1535 GHVVGVLYLEHRDVPSAFPPARVELLSVLASQAAIAVENAVLYRDQEVKIQER-TAELRI 1593

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             ++ A+  N AKS FLASMSHELRTPLN ILG+++ +      P  +   +E +  + +S
Sbjct: 1594 AKEAADRANRAKSDFLASMSHELRTPLNGILGYAQFLMR---APELSPKSREGVQIVKKS 1650

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356
            G+HLL L+N++LDL++IEAG+ EL          V   + +  +RA+++ I    ++  P
Sbjct: 1651 GEHLLALLNDLLDLAKIEAGKMELVPRRFDFPSFVHNVVDLCGVRAEQRGIAFTYEVRGP 1710

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPG 411
            +L++V ADEK + QV+LNLL NA+KFT   G V + V      G         I+D G G
Sbjct: 1711 ALAAVHADEKRLTQVLLNLLGNAIKFTER-GAVTLLVDALDDGGGGPRDVRFRIEDTGTG 1769

Query: 412  IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            IA   +  +   F Q         +G GLGL I++ I+   GG   + S+L +G      
Sbjct: 1770 IAPEHLARIFEPFEQVGDQRV-KSEGTGLGLAISKRIVEQLGGTIHVESELGKGSAFTVT 1828

Query: 472  LPNTRVLNF 480
            L      + 
Sbjct: 1829 LTLAEAPSS 1837


>gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  KS F+ + SHELRTPL  +    +++       L+N    E +       + L +
Sbjct: 385 QLDQLKSEFVMTASHELRTPLTGMAMSIDLLTETAKTKLSNNEQ-ELLQTAQEDVERLRD 443

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS+IE+G+ E+ ++ +    +V + I +L++++++K IE+  +   +L  V  
Sbjct: 444 LVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAIELLKIQSEDKQIEVSSQTASNLPKVEV 503

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   +  V+ NL++NA+++      + V      G    I++ D+GPGI       +   
Sbjct: 504 DVNKITWVMTNLIANALRYAKE--TIEVIAKR-HGTWISIAVADDGPGIDPAYQTKIFDK 560

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           F Q     +    G GLGL I + I+  HGG   + S    G      LP T     
Sbjct: 561 FVQV--KTEKDVGGSGLGLAICKEIIKAHGGTIWVDSTPGHGSTFTFTLPVTASTPA 615


>gi|57234164|ref|YP_181774.1| sensor histidine kinase [Dehalococcoides ethenogenes 195]
 gi|57224612|gb|AAW39669.1| sensor histidine kinase [Dehalococcoides ethenogenes 195]
          Length = 473

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 132/279 (47%), Gaps = 9/279 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              ++    +     LS + + D      E+A+S +    +  E    ++ R LA ++HE
Sbjct: 199 LKALSRSARRIAGGELSQRVKVDSRDELGELAESFNHMA-QSLETNEQSRQRLLADIAHE 257

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL  I G  + I          E   +++  I      L  LI ++ D+S  E+G+ 
Sbjct: 258 LRTPLTVIEGTVDGILDGVF-----EADAQHLTTIKEESATLTRLIKDLRDISLAESGKL 312

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           +L  + + + DI+R       + A++K+I +   I  +LS+V  D   + Q+  NLLSNA
Sbjct: 313 KLEMTQLDIADIIRRQAKQASILAKDKSIALLSDIPANLSTVTGDATRLNQITANLLSNA 372

Query: 380 VKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           ++ T  GG++ +++    +    G  +S+ DNG GI   ++P +   F + + +   +E 
Sbjct: 373 LRHTPAGGQISLSLKNMLYRDKPGIMVSVTDNGEGIPPADLPHIFDRFYRVNTSRARSEG 432

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL I + +   HGG     S L +G      LP +
Sbjct: 433 GSGLGLAIVKEMAEAHGGYVWAESLLGKGSTFNYWLPAS 471


>gi|13472176|ref|NP_103743.1| sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14022921|dbj|BAB49529.1| probable sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1622

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 139/301 (46%), Gaps = 23/301 (7%)

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256
               L  +N ++       ++   ++E      +  R+  EE        +  KS FLA+M
Sbjct: 893  QEELHATNEELQEKAQLLENEKKQVENKNLEIEMARRALEEKAEQLALTSKYKSEFLANM 952

Query: 257  SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
            SHELRTPLN++L  S ++     G L NE   E+   I+ +G  LL+LIN+ILDLS+IE+
Sbjct: 953  SHELRTPLNSLLILSNLLAANQQGNL-NEKQVEFARTINSAGTDLLSLINDILDLSKIES 1011

Query: 317  GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375
            G   +  + + +  + +      +  A +K +     +DP L   V  DEK ++Q++LNL
Sbjct: 1012 GTVSIDINDMPVAHLRQHMDRTFRQLAADKGLGFTINVDPELPETVRTDEKRLQQIVLNL 1071

Query: 376  LSNAVKFTAIGGRVHVTVGWTSGRGQ----------YISIKDNGPGIAEGEIPTVLTSFG 425
            LSNA KFT+  G V +         +           I++ D G GI E +   +  +F 
Sbjct: 1072 LSNAFKFTSA-GEVRLDFRVEKTGRRNGARQPKRALAIAVTDTGIGIPEDKQKLIFEAFQ 1130

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN---TRVLNFIP 482
            Q          G GLGL I++ I    GG+  + S   +G     ++P       +   P
Sbjct: 1131 QADGTTSRKYGGTGLGLSISREIARLLGGELRVESTPGKGSTFTLMIPLDGPRVAMTTQP 1190

Query: 483  E 483
            E
Sbjct: 1191 E 1191


>gi|307706667|ref|ZP_07643473.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
 gi|307617911|gb|EFN97072.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
          Length = 449

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      +   +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S   +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLP 432


>gi|59712226|ref|YP_205002.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Vibrio fischeri ES114]
 gi|59480327|gb|AAW86114.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Vibrio fischeri ES114]
          Length = 972

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 10/263 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            L       +L +  E         D+ R  AE+ N AKS FLA+MSHE+RTPLN +LG 
Sbjct: 432 ELQIAQRTQELKSSNERLNVEIINHDKARDLAEQANRAKSAFLATMSHEIRTPLNGVLGT 491

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E++     G       K+Y+  I+RSG++LL+L+N+ILD S+IEAG   + +   S+  
Sbjct: 492 GELLR----GSGLTAQQKQYVDIINRSGENLLDLLNDILDYSKIEAGHLSIRKKNFSVQS 547

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +   +   RAQ+K I +   +       W  D   +RQV+ N + NA+KFT   G V
Sbjct: 548 MITDVHHLFSSRAQQKGITLSVNVPVDTPEWWSGDCSRIRQVLNNFVGNAIKFTHT-GSV 606

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +           + D G GIAE EI T+   F Q    +K    G GLGL I+Q ++
Sbjct: 607 TIQLSLILDTTLLFEVIDTGVGIAEHEIDTLFDVFTQAEEGMK-VSGGTGLGLAISQRLI 665

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G+  + S   +G      L
Sbjct: 666 EAMDGEIGVESIEGQGSTFWFSL 688


>gi|313622296|gb|EFR92795.1| heme sensor protein HssS [Listeria innocua FSL J1-023]
          Length = 459

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 135/311 (43%), Gaps = 10/311 (3%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F         +     +   +  +     +   +   T  T  + + N  +      KD+
Sbjct: 158 FGELRIFFAMILIFTSIISTLFVLISGRYIVKPVVKLTNATKKIRRGNYDVGLEVRRKDE 217

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           +    +    ++ E     E+   A+  F+A++SHEL++PL ++ GF+ ++     G L 
Sbjct: 218 IGQLADSFAKMASE----LEKSEAARQEFVANVSHELQSPLTSMQGFARLL---GSGTLT 270

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +  KEY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   
Sbjct: 271 EKEQKEYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSW 330

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +EK + I  ++     +   D + + QV  NLL+NA+K+T   G + V + +      ++
Sbjct: 331 REKELTINLELAD--INYSGDAELLYQVWSNLLNNAIKYTPKSGNIQVRL-YEETTNVFV 387

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + ++G  I++ ++  +   F + S +    E   GLGL I + I+  H G+  + S  +
Sbjct: 388 EVWNSGVCISKEDMAKIFERFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTK 447

Query: 464 EGVEVIAILPN 474
           +G      LP 
Sbjct: 448 KGTTFKVKLPK 458


>gi|323524713|ref|YP_004226866.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323381715|gb|ADX53806.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1489

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 226  AELEVAKSL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A +E A++      R  AE  + AK  F A MSHE+RTP+N +LG  EV+E   +    N
Sbjct: 824  ASVEHARAEELARARDVAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----N 879

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +G IH S   LL +++++LD S+IEAGR  +    I L ++V   + +L  RA 
Sbjct: 880  ADQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAH 939

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399
            EK +++   I   ++ ++  D   +RQV+ NLL NA+KFT   G+V V+V   +     +
Sbjct: 940  EKGLKVRVDIASDVAATLRGDSVRLRQVLFNLLGNAIKFTPA-GQVDVSVAVVAQTSELQ 998

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               + ++D G GIA      +   F Q   +      G GLGL I + ++    G   + 
Sbjct: 999  TIEVIVEDTGIGIAADVQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLALE 1058

Query: 460  SKLREGVEVIAIL 472
            S+   G  +   L
Sbjct: 1059 SEPGRGTRMTVRL 1071


>gi|226947053|ref|YP_002802126.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
 gi|226721980|gb|ACO81151.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
          Length = 1030

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS FLA+MSHE+RTP+N I+G +++     +    +E  + ++   H + + LL +IN
Sbjct: 288 RMKSDFLANMSHEIRTPMNVIMGMTQLALDSGL----DERQRNFVEKAHDAARSLLGIIN 343

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365
           +ILD S+IEAG+    +    L  +      +  L+AQEK +E+   I   + + +  D 
Sbjct: 344 DILDFSKIEAGKMRFEQVDFQLESVTDHLADLSVLKAQEKGLELLFDIATDVPTALIGDP 403

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVL 421
             + QV+ NLL NA+KFT+  G + + +       +       ++D G G+ E +   + 
Sbjct: 404 LRLGQVLSNLLDNAIKFTSR-GEITLRIRKECEDERGVRLRFEVRDTGIGLNETQRRKLF 462

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            +F Q   +      G GLGL I + ++A   G+  + S    G     
Sbjct: 463 RAFTQADSSTSRQYGGTGLGLAICKHLVAMMDGEIGVDSSPGVGSTFHF 511


>gi|330995456|ref|ZP_08319361.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575524|gb|EGG57062.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 919

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 19/302 (6%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
            +  + +H         +A  +     + Y L +  V     + EK+ ++ E        
Sbjct: 339 ARLSIVVHPPFWETYYAMAVYVLVAIGMAYWLSRMYV-----RREKEKMMEERR------ 387

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           +  RK+ E     K RF  ++SHE RTPL  IL     +  +          K+ +  I+
Sbjct: 388 ENARKQQEHLEEMKLRFFTNVSHEFRTPLTLILTPLGTLIKQQGDV----DLKQRLTVIY 443

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+ + LL L+N++LD  ++E     LS S   ++  VR+ +   +   +EK I +  +  
Sbjct: 444 RNAEKLLQLVNQLLDFRKLEMRGERLSVSMGDMVVFVRDAVEAFRGLVKEKGITLTFESK 503

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGI 412
                +  D   + +V+ NLLSNAVKFT  GG + V V            +S++D G G+
Sbjct: 504 VEHFYMNYDHDKVYKVVNNLLSNAVKFTPSGGCIGVGVESSVRNGREYVAVSVRDTGCGM 563

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            EG+   + T F Q     K+   G G+GL + +  +  HGG+  + S+  EG     +L
Sbjct: 564 EEGDKERIFTRFYQVEDGHKTQ-PGSGIGLHLVKGYVDLHGGEITVDSRSGEGSTFTVLL 622

Query: 473 PN 474
           P 
Sbjct: 623 PA 624


>gi|326793261|ref|YP_004311082.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326544025|gb|ADZ85884.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 817

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 9/264 (3%)

Query: 231 AKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL----N 283
            +   +E RK  EE       KS F A+MSHE RTPLN IL   +++E            
Sbjct: 537 KQKEQEEARKVYEEALQIEKIKSEFFANMSHEFRTPLNIILATVQLLEKGIKQGHINVQP 596

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
           N    +Y+  + ++   +L L N I++L+ I+ G Y++    +++++++ E  + +    
Sbjct: 597 NFDLVKYLSTVKQNTYRILRLSNNIMELTSIDTGHYKMKLENLNIVNVIEETTLSVADYI 656

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           + + I +    D        D + + ++ILN+LSN+VK+T  GG + V +         +
Sbjct: 657 ESRGITLLFDTDVEEVITACDAEKLERIILNILSNSVKYTYRGGIISVNLSLQDEGLIVV 716

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI + ++ T+   F Q    +    +G G+GL + +S++  H G    +S+L 
Sbjct: 717 -VKDTGVGIPKEKLTTIFNPFIQVDSLLTRKCEGSGIGLALVKSLVKMHEGTIDAKSELG 775

Query: 464 EGVEVIAILPNTRVLNFIPEDNHE 487
           +G E++   P  RVL     +  E
Sbjct: 776 KGTEIVIKFPI-RVLEDSEVEPLE 798


>gi|120603325|ref|YP_967725.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563554|gb|ABM29298.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 667

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 25/276 (9%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A    DE R+ AE  +LAK+ FLA MSHE+R  LN I+G +E++    +        +E
Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTPLSG----EQRE 178

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S + LL L++++LD SR+EA +  L E   SL  ++++ +   +  A+ KNI 
Sbjct: 179 SLNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNIS 238

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------- 399
           +  ++ P +   +  D   + QV+ NL+ NAVKFT  G  + + V               
Sbjct: 239 LDFRVTPDVPDRLTGDATRLTQVLANLVGNAVKFTHKGSVI-IEVSAIPQDQTLLESLFP 297

Query: 400 -------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      SI+D G GIA+  + T+  +F QG+        G GLGL I ++++   
Sbjct: 298 DGPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIM 357

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GG    RS   +G          R+    P  N  S
Sbjct: 358 GGSIWARSSEGQGSSFHFT---CRLRPETPAINTPS 390


>gi|89889435|ref|ZP_01200946.1| sensor histidine kinase [Flavobacteria bacterium BBFL7]
 gi|89517708|gb|EAS20364.1| sensor histidine kinase [Flavobacteria bacterium BBFL7]
          Length = 336

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 133/314 (42%), Gaps = 23/314 (7%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-----LEVAKSLSDE------ 237
           L  +L    S F  I Y + +   + +    E   L+        E+A  +         
Sbjct: 20  LIMVLLLFSSSFIIIQYRVQRFIYRRIKKIYEDVSLLETSNFTDREIATDMRTLTQQVER 79

Query: 238 -TRKRAEEENLAK------SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
             + +  E    K        FL ++SHEL+TPL  + G+ + +        +    K+Y
Sbjct: 80  FAKDKKIEIETLKVRETYRKEFLGNISHELKTPLFTVQGYIDTLLDGAH--KDKVIRKKY 137

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +    +    L  ++ ++  ++++E G   L      ++++V++     +++A +KNI +
Sbjct: 138 LQRAQKGVDRLTYIVKDMDMITKLEVGDMSLEILEFDIVELVQQVFDQFEMKASKKNISL 197

Query: 351 FQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
              +D      V+AD++ ++QVI NL+ N++K+    G   + +         + + DNG
Sbjct: 198 TFDMDYKEPIIVFADQERIQQVIANLVVNSIKYGKQNGTTEIAIEDLINNKVIVRVTDNG 257

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +  IP +   F +   +    E G GLGL I + I+  H     + S+   G E  
Sbjct: 258 EGIKKEFIPRLFERFFRVDQSGSRREGGSGLGLAIVKHIIEAHNESIYVDSEPGIGSEFS 317

Query: 470 AILPNTRVLNFIPE 483
             L   +V + I E
Sbjct: 318 FTL--EKVSDKISE 329


>gi|260461913|ref|ZP_05810158.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032160|gb|EEW33426.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 409

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 154/407 (37%), Gaps = 19/407 (4%)

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W L    V       G         +  +    +    G          +  +     + 
Sbjct: 14  WLLAAGVVAVLIAFAGISAYVLVPALLLLLAAAMLPTAGVRQSFEGAASIEAIGLQRLSG 73

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI---MSMHVLDISLAG 191
           EYL    +  L+I    + + +               ++LS +     M   +  +    
Sbjct: 74  EYLAAAVADPLIIFDHAAIIVHANAAAFAAFGGIAPGISLSLKFRAPEMQALLDGVLSGN 133

Query: 192 MLATALSFFTYIT-YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
           + +  + +   +     ++ +   +    +   L+ + +      D            ++
Sbjct: 134 VASDVVDYTEKLPVERAYRVSASSVGHGTDLYVLVFKDQSETRRID----------RMRA 183

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F+A+ SHELRTPL +I GF E +        +    ++++  +      +  LI+++L 
Sbjct: 184 DFIANASHELRTPLASISGFIETLR--GPARNDPAAREQFLQIMQNQTGRMARLIDDLLS 241

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           LSR+E   Y    + + L   V   I  L   A+E N+ I +        V  D   + Q
Sbjct: 242 LSRLEMKPYLKPGTEVDLRQTVDSVIDSLAPLARENNVVIERDFADGPLDVPGDRDELFQ 301

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           V  NLL NA K+   GGRV V++         G  ++I+D GPGI E  IP +   F + 
Sbjct: 302 VFENLLENACKYGQSGGRVVVSIAPGDDGSEPGIDVTIRDFGPGIPEEHIPRITERFYRI 361

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     ++G GLGL I + I+  H  +  IRS++ +G      LP 
Sbjct: 362 DVETSRTQKGTGLGLSIVKHILTRHNARLTIRSEVGKGAAFSVHLPA 408


>gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 718

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 131/312 (41%), Gaps = 10/312 (3%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
              + L       + V         A    ++      +    +      A  +     +
Sbjct: 264 LAYIPLKVNYWYLIVVTKAKSIDYTALTQQYYVISGILVMAILIVSFVAMANLNIHNYRV 323

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
             A     +  ++A + N A+  FLA +SHE+RTPLN I+G  E++ LE       E   
Sbjct: 324 AQANRQLRQAVEQANQANAARRDFLARISHEIRTPLNGIVGMIELVRLEY---DAKEKCL 380

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+     S  +LL L++++LD+SRIE+G+  L      +  +  E   +    A+++ +
Sbjct: 381 EYLRKATVSANYLLGLLSDVLDISRIESGKLTLHNDLADMRVLREEVEALAGTLAEKRQL 440

Query: 349 EIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QY 402
            I           +  D   ++QV++NL+SNA+K+T  GG + V     +          
Sbjct: 441 TIRIDDSGMKHRYFVTDYLRLKQVLVNLVSNAIKYTGDGGHIVVNFSEEAATEDSRSLVT 500

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D+G GIA  ++  +   F QG    K    GVGLGL I    +   GG   + S+ 
Sbjct: 501 LQVQDDGQGIAPDKLKEIFEPFEQGGGGKKREN-GVGLGLSIVTGTVTLMGGHINVESEP 559

Query: 463 REGVEVIAILPN 474
             G      LP 
Sbjct: 560 GRGSRFTITLPL 571


>gi|315497089|ref|YP_004085893.1| histidine kinase [Asticcacaulis excentricus CB 48]
 gi|315415101|gb|ADU11742.1| histidine kinase [Asticcacaulis excentricus CB 48]
          Length = 518

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 10/268 (3%)

Query: 221 KDDLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +  +    E   S      E R+ A++   A+  F   MSHE+RTPLN +LG   ++   
Sbjct: 3   RRQMSLAPEQTDSRLMTEAEAREAAQKL-KAREDFFKLMSHEIRTPLNGVLGMLSLLNRT 61

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
           ++        + Y+     SG+HLL L+N++LD +RIEAG   L    I L  +++    
Sbjct: 62  SLTA----EQQSYLQTARESGEHLLTLVNDLLDYARIEAGHIHLESHLIELEPLLQSVAE 117

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
           +L  RA    IEI   +DP L ++  DE  +RQ++ NL  NA+KFT  GG V + V  T 
Sbjct: 118 LLSPRAYAGGIEIAWSLDPRLEAIEIDEGRLRQILFNLAGNALKFTKSGG-VLIGVTLTE 176

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQF 456
           G      ++D G GI E     +  +FGQ   +   A   G GLGL + + ++     + 
Sbjct: 177 GGAIRFGVRDTGAGIPEEARVRIFEAFGQVDPSHAGAQYGGAGLGLVVVKKLIEAMNAEL 236

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484
            ++S+   G    A  P    L   PE 
Sbjct: 237 DLQSEPGRGSLFTATFPVPCTLRTAPEP 264


>gi|266619603|ref|ZP_06112538.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868825|gb|EFD01124.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 498

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 153/321 (47%), Gaps = 10/321 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L   +      +++A+    + +  +L + +   +   L      T  +   N+   + 
Sbjct: 173 GLLPEIKAMMAEMLLAVILIIVFTDAILMMWVYSSVVHPLGRLQEATKKIRDGNLD-FAL 231

Query: 218 QAEKDDLIAELEV-AKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV 273
           + E DD I +L    + +    ++ AEE+   +      ++++SH+L+TP+ AI G+ E 
Sbjct: 232 EVENDDEIGQLCQDFEEMRMRLKENAEEKIQYDKENKELISNISHDLKTPITAIKGYVEG 291

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I        + E    YI  I+     +  LI+E+   S+I+  +   + S I++    R
Sbjct: 292 IMDGV--ASSPEKLDRYIRTIYNKANDMDKLIDELTFYSKIDTNKIPYTFSKINVASYFR 349

Query: 334 ECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHV 391
           +C+  + L  + +NIE+ +         V AD + MR+VI N++SN+VK+     G +++
Sbjct: 350 DCVDEVGLEMEARNIELGYFNYVDEDVMVIADAEQMRRVINNIVSNSVKYIDKKNGIINI 409

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +    G    I I+DNG GIA  ++P +   F +   +  S++ G G+GL I + I+ +
Sbjct: 410 RIK-DVGDFIQIEIEDNGKGIAAKDLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIED 468

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
           HGG+    SK   G E+  +L
Sbjct: 469 HGGRIWATSKEGIGTEIHFVL 489


>gi|288942215|ref|YP_003444455.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897587|gb|ADC63423.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 758

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 6/275 (2%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
           +          ++  L  Q+E  +      +A    +   ++A+E NLAKSRF+A+MSHE
Sbjct: 226 YPLSGERSTGESLVTLLDQSEHHESERRARLAAEKLETALRQADEANLAKSRFVANMSHE 285

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTPL AI GF+E +      P   E  +  +  I R+ ++L+ L+N ILD SRIE+G+ 
Sbjct: 286 IRTPLTAITGFAETLTESDQPP---EECERAVNAIIRNSRYLMELVNNILDFSRIESGKL 342

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
            + +        +RE       RA+ K +     ++      +  D    +Q+++NLL+N
Sbjct: 343 LVEQIETPFETWIREIAAFAIERARGKGLHFDLSVEAPWPRTLVTDPTRAKQILVNLLNN 402

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           A KFT   G V + V       +  + + D G GI       +  +F Q   +      G
Sbjct: 403 AFKFTEQ-GSVRLHVVLDPEHERLVLEVTDTGIGIESHRQEELFEAFVQADASTMRQHGG 461

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL IA+++    GG+  +RS    G    A L
Sbjct: 462 SGLGLNIARTLARCLGGELSVRSVFGVGSRFTATL 496


>gi|158338274|ref|YP_001519451.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158308515|gb|ABW30132.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 410

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
             +      ++   ++F         +S +K        + L +++    +  ++  ++ 
Sbjct: 128 TPIHDEQGQIVGAVVTFCDITQRQWAESVLKQT-----NEVLESKVRERTAELEQVNQQL 182

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E +  KSRF+A + HE R PLN I      +       L      EY+  I  + + + 
Sbjct: 183 QELSALKSRFVAMVCHEFRNPLNNIALSISSL-NRYHSRLTVRQQSEYLAGIAENVERMT 241

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +I++IL + +++A R EL  + + L+   ++ +  +Q  A    + +  +    ++ + 
Sbjct: 242 EMIDDILVIGKLDAKRMELKSAEVDLVAFCQDLVAEVQSMAPHHVVLLICRHRQLITPI- 300

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D + +R ++ N+L NA++++   G +   V           I D G G++  E   +  
Sbjct: 301 -DVQLLRSILTNILHNAIRYSPEDGEIQFKVSRRK-HIITFQISDQGMGVSPEEQSLIFD 358

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +G     S   G GLGL I +  +    G   + S++  G      LP +R
Sbjct: 359 PFYRGKNV--SNVPGTGLGLSIVKQFVELLQGTITLDSRIGVGTTFTVRLPCSR 410


>gi|313611039|gb|EFR85926.1| sensor protein kinase WalK [Listeria monocytogenes FSL F2-208]
          Length = 440

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F++++SHELRTPL ++  + E +        + E    ++       + ++
Sbjct: 204 EKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMI 261

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR++ GR +L +S ++  D     I   ++  +++ I   + I      + 
Sbjct: 262 RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMM-KKETIMFKRHIPREPVIIE 320

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            DE  + QV+ N++SNA K++  GGR+   +         +SI D G G+ + ++  V  
Sbjct: 321 IDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFD 379

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F +   A      G GLGL IA+ ++  HGG+        +G  +   LP     + +P
Sbjct: 380 RFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP----YSDLP 435

Query: 483 EDNHE 487
           ED+ E
Sbjct: 436 EDDWE 440


>gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
 gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3]
 gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
          Length = 778

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQLVDFTSFLADLENLSALQAQQKGLRFNLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E+
Sbjct: 389 PHQVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDAFDED 519


>gi|303249390|ref|ZP_07335615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302489208|gb|EFL49174.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 545

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 25/320 (7%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRKRAE--- 243
           +AG +A+       I     + +   L  Q +   L    +  +++  +   R+ AE   
Sbjct: 97  MAGPMASLAGLPFTIERRYRRKDGTWLPVQVDFSPLDDTGQCFQAMLQDISARRAAEDAK 156

Query: 244 --------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
                     + AKS FLA+MSHE+RTPLN ++G  +++      P       EY+    
Sbjct: 157 NAALSQVRSASQAKSAFLANMSHEIRTPLNGVMGMLQLLLATPHSP----EQDEYMRTAM 212

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            +   LL L+++ILD S ++ G   LS+   ++ D++   I      A  K +    ++ 
Sbjct: 213 DAASALLRLLSDILDFSSLDGGTMSLSQELFTVSDVLDPIIASFAHEAAIKGLAFSCRVA 272

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDN 408
           P     +  D   +RQ++ NL  NA+K+T   GRV + V                +++D 
Sbjct: 273 PQTPARLRGDPARLRQLLYNLTGNAIKYT-TFGRVELDVAPVEKPESPCMALLEFAVRDT 331

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   ++  VL +F Q   ++  A  G+GLGL I ++I    GG+ L+ S+  +G E 
Sbjct: 332 GIGIPSEKLDHVLDAFAQADASVTRAHGGLGLGLTIVRAIAERMGGRILLSSQPGQGTEA 391

Query: 469 IAILPNTRVLNFIPEDNHES 488
              LP  R     P     +
Sbjct: 392 RVRLPFARPPEMAPPVAPSA 411


>gi|265990697|ref|ZP_06103254.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994529|ref|ZP_06107086.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|262765642|gb|EEZ11431.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263001481|gb|EEZ14056.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 532

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 24  AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 83

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 84  GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 140

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 141 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 200

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAE-EENLA-KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E     K R LA++S
Sbjct: 201 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K ++   ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|212712306|ref|ZP_03320434.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
 gi|212685052|gb|EEB44580.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
          Length = 928

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 9/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+   +++ KSL D     AE+ N AKS FLA++SHELRTPL  I+G  E+++   +   
Sbjct: 428 DISIRVQMEKSLQDVA-DAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYEL--- 483

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            ++     +  +  S   LL +I++ILD S+IE+ + ++     +  ++    +      
Sbjct: 484 -SDKAVRLVSTMDNSSSLLLQIISDILDFSKIESKQLKIENKLFNCRNVFAYVLANYVPL 542

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
           A +K + ++  I+P++  +  +D   ++QVI N+++N++KFT   G V + V W      
Sbjct: 543 ATKKQVSLYSYIEPNIPDLMLSDPVRLQQVISNIVNNSIKFTDS-GFVMLHV-WKDENYL 600

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I +KD+G G+    +  +   F Q      +  +G GLGL I + ++    G   + S+
Sbjct: 601 KIEVKDSGIGMTPAVVMQLFDPFFQVYD-QNNGHKGTGLGLAICEKLINLMDGDIAVDSQ 659

Query: 462 LREGVEVIAILPN 474
              G      +P 
Sbjct: 660 AGLGSRFTIRIPL 672


>gi|126736264|ref|ZP_01752006.1| Probable two-component sensor histidine kinase [Roseobacter sp.
           CCS2]
 gi|126714085|gb|EBA10954.1| Probable two-component sensor histidine kinase [Roseobacter sp.
           CCS2]
          Length = 345

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 18/340 (5%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
                LLI       +   L  A+  +   +V      A+    ++      +       
Sbjct: 13  LSLPVLLIGPDERVRATNGLVDAILGA--GLVGMHYITALRQPALIAAIADAIAKREACV 70

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
             Y   +  K+ V  ++  A  DD++   E   +        AE+ +  +  F+A++SHE
Sbjct: 71  VRYTGRNGPKNTVYQINIAATDDDILLTFEDQTA--------AEDASQMRRDFVANVSHE 122

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL A+LGF E +        +      ++G +      +  L+++++ LSR+E    
Sbjct: 123 LRTPLTALLGFIETL--NGAAKDDPVARDRFLGIMANEANRMTRLVDDLMSLSRVEEDER 180

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
                 + L  ++   I  L+ +A    + +   +  +   V  D   + QV  NL+ NA
Sbjct: 181 VRPREHVDLGALLSSVIKGLEPQANAAGVTVTLNLVTTDEMVPGDAGQLVQVFTNLVENA 240

Query: 380 VKFTAIGGRVHVTV------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           +K+ A G  V V +               IS+ D G GI    I  +   F +       
Sbjct: 241 IKYGASGQVVTVRLLPRAMNQRLRCDAVQISVSDKGDGIPAHHIARLTERFYRVDNHRSR 300

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              G GLGL I + I+  H G+ LI S   +G +V   LP
Sbjct: 301 EVGGTGLGLAIVKHIINRHRGRLLIESDEGQGTQVSVFLP 340


>gi|323706069|ref|ZP_08117638.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534513|gb|EGB24295.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 456

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 148/315 (46%), Gaps = 11/315 (3%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQA 219
           Y      F ++       ++        + G     + +     + +  K   K LS   
Sbjct: 151 YFFLKLLFVMMAVSDVIGVLVSFFAGYFITGRALRPVDYMVREVHAIDEKKLNKRLSISG 210

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D+L         + D    R E+    ++ F++++SHELRTPL+ + G+ E+I  +  
Sbjct: 211 NNDELSKLAATFNDMLD----RLEDYFKRQNAFISNVSHELRTPLSILKGYIELI--DRW 264

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G  N +  +E IG + +  Q +  LI  +L L+R +     +++   ++ +++ E +   
Sbjct: 265 GKDNKDVLEESIGALKKEEQEMEILIERLLMLARGDNKTLNINKKLFNVYELIAEIVRDA 324

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           ++    KNIEIF   +     V+AD   +++++  +L NA+K+T I G +    G  +  
Sbjct: 325 KVIFNGKNIEIFCDKN---LEVYADRNLIKELLRIILDNALKYTDIDGNIKFYAG-EADN 380

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++IKD+G GI E EIP +   F +   A      G+GLGL IA+ I+  HGG   ++
Sbjct: 381 NVAVTIKDDGIGIPEEEIPYIFDRFYRVDKARSKETGGMGLGLSIAKLIVELHGGSIEVK 440

Query: 460 SKLREGVEVIAILPN 474
           SKL EG E    +P 
Sbjct: 441 SKLNEGSEFKITIPK 455


>gi|295101442|emb|CBK98987.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 478

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 153/329 (46%), Gaps = 9/329 (2%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
             ++  +++  L          V + +    +    +  +     +   L         +
Sbjct: 153 VAAMRLVTSLTLVEEQLKRTVVVALIMGAAVLAFTIMSGLYFVRSIVVPLGQVERTAAGI 212

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  + +       +    E++  +   +   +  EE    K+ F++S+SHELRTPL +I
Sbjct: 213 ARGELDVRLPVTGDER--DEVDRLRGTINRMAEGLEETEKMKNEFISSVSHELRTPLTSI 270

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E +   T+   ++E Y++ +  I+     L N++ E+LD SR++ GR +++   + 
Sbjct: 271 RGWVETLR--TLDDPSDENYRKGLEIINNETARLYNMVEELLDFSRLQNGRLKMTCRPLD 328

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L+  + + ++  + R Q + + +       +  V+AD   +RQV +N+L NA+K++A GG
Sbjct: 329 LVAELTDAVLFCEARIQREGLVLVYNEPEEMIPVYADPDRLRQVFINILDNAIKYSAPGG 388

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           R+ V + W      +I + D G GI   ++  V T F +GS +++    G G+GL +  S
Sbjct: 389 RITVKL-WAGEYKAFIELIDQGRGIPPEDLENVKTKFYKGSNSVR----GSGIGLALVDS 443

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
           IM    G   I+S L  G  V   LP  +
Sbjct: 444 IMTALDGTMDIKSTLGRGTVVTLGLPLYK 472


>gi|225412406|ref|ZP_03761595.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme
           DSM 15981]
 gi|225042069|gb|EEG52315.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme
           DSM 15981]
          Length = 604

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 8/237 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           + +A+  + AK+ FL+ MSHE+RTP+NAI G + + +     P+      + +  I  S 
Sbjct: 218 KSKADAVSRAKTDFLSRMSHEIRTPMNAISGMTTIAKSVVKDPV---KTLDCLEKIESSN 274

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPS 357
            +LLNL+N+ILD+SRIE+G+ EL    + L  ++     +   +A EK + +        
Sbjct: 275 VYLLNLVNDILDMSRIESGKLELCYGTLDLTQLLASLESLFHAQALEKGLTMCLKDGRSR 334

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAE 414
              + AD   + QV++N++ NAVKFT  GG + V V             S+ D G GI  
Sbjct: 335 NRLLRADSLRLNQVLVNMIGNAVKFTDHGG-ITVRVEELEANPRAVLRFSVADTGIGIEP 393

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
             +P +   F Q   +  S   G GLGL I+  ++   GG   + S++  G E    
Sbjct: 394 SSLPNIFNPFEQAEASTASRRGGTGLGLSISYRLVQMMGGVLEVTSQVGRGSEFFFT 450


>gi|159901161|ref|YP_001547408.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894200|gb|ABX07280.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 533

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +E +  K++F+A+ SHELRTPL  I  ++ + +             +Y+  I      
Sbjct: 296 RLKEYDRLKTQFVANASHELRTPLANIKLYARLAQQVKAKTKLP----QYLETIASEAGR 351

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLS 359
           L  ++ ++L L+R+++G    S   + +I+++R      +  A+ +   +   +   +L 
Sbjct: 352 LEAIVEDLLTLTRLDSGLMHSSPEWVDIIELLRNLAQTYRPLAEAREQRLIFQECTSNLP 411

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGE 416
            +W       +V++NLLSNA+KFT  GG V ++V   +  GQ    I++ D GPGIA   
Sbjct: 412 KLWLAPDQFMRVVVNLLSNALKFTPTGGTVTLSVDRQTQAGQAGTLITVADTGPGIAPEH 471

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F +GS      E G GLGL I + ++A  GG   + S + +G +    LP  +
Sbjct: 472 QQRLFERFYRGSNPT---ESGSGLGLAIVRELLALMGGTISVASTVGQGSQFTCWLPLEQ 528


>gi|323139437|ref|ZP_08074486.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395308|gb|EFX97860.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 638

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 6/243 (2%)

Query: 238 TRKRAEEE----NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
            RK AE      +  K  FLA+++HELR PL  I     ++ L +  P            
Sbjct: 260 ERKAAEAALRDADRRKDEFLATLAHELRNPLTPIRNAVHLLRLNSETPGRENRNPRLFEM 319

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + R   HL+ L++++L++SRI  G+ EL +  + L  ++R  +   Q   Q    E+   
Sbjct: 320 VERQVSHLVRLVDDLLEVSRITRGKIELRKERLDLTALLRHVVDASQPAIQRGGHELRMD 379

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +  +   + AD   + Q+  NLL NA K+T  GG + +T     G    IS++DNG GI 
Sbjct: 380 LPSAPLILDADPVRLSQIFTNLLDNAAKYTEAGGTITLTAARQ-GAAATISVRDNGVGIP 438

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
              +P V   F Q   ++  A+ G+G+GL + +S++  HGG     S  L  G   +  L
Sbjct: 439 AELLPRVFDIFTQVDRSLGRAQGGLGIGLALVRSLVEMHGGSVEADSAGLGRGSTFVVRL 498

Query: 473 PNT 475
           P  
Sbjct: 499 PLA 501


>gi|256044286|ref|ZP_05447190.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113119|ref|ZP_05453996.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|260563640|ref|ZP_05834126.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260153656|gb|EEW88748.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
          Length = 609

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAE-EENLA-KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E     K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K ++   ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|113477259|ref|YP_723320.1| histidine kinase [Trichodesmium erythraeum IMS101]
 gi|110168307|gb|ABG52847.1| histidine kinase [Trichodesmium erythraeum IMS101]
          Length = 1121

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 33/287 (11%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                  +   + K ++     Q +  DLI                    N  K  FLA 
Sbjct: 334 LFDLTLVLAQDVTKQHLVAKELQDKNTDLI------------------RLNRLKDEFLAC 375

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHEL+TPL A+LG S +++ +T+G L N+    Y   IH+SG+HL+ +IN+ILDL+R+E
Sbjct: 376 ISHELKTPLTAVLGLSSLLKDQTLGAL-NKRQTHYATLIHQSGRHLMAVINDILDLTRME 434

Query: 316 AGRYELSESAISLIDIVRECIIM-LQLRAQEKNIE------------IFQKIDPSLSSVW 362
            G+ EL    + +  +        LQL+ +    +               +I+  L  + 
Sbjct: 435 TGQMELIPEPVEIRKVCDRAFQEALQLQHKRPQGQSSAIFSDSIRAKYTLEIEKDLDIII 494

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           ADE  +RQ+++NLLSNA+KFT I G++ + V     +    ++ D G GI   +   +  
Sbjct: 495 ADELRLRQMLVNLLSNALKFTPIDGKMGLKVARWE-KWITFTVWDFGIGIPANKQHLIFQ 553

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            F Q    +    +G GLGL + Q +   HGG     S+  +G E  
Sbjct: 554 KFQQLENPLIREFEGTGLGLVLTQRLARLHGGDVTFISQEGKGSEFT 600


>gi|290770266|gb|ADD62021.1| putative protein [uncultured organism]
          Length = 726

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 137/304 (45%), Gaps = 11/304 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                  V  +    + A    +   I   +F    +++  + E    + E+E  + L  
Sbjct: 283 AFFADKQVYSLRNRAVAAALFVYIAVIGVVMF--VRQLVIAKDESKMQLQEMEYKRQLL- 339

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           +  ++ +  N+AK+ FL  MSH++RTP+N I G  ++         N E  +E +  I  
Sbjct: 340 QAAEQEKRANIAKTDFLRRMSHDIRTPINGIRGMVDICR---FNLGNREKEEECLDKIMS 396

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-D 355
           +   LL+L+N++LD++++E+G   + E    L  I+ E   +++ +A E+ I+       
Sbjct: 397 ASGFLLDLVNDVLDMNKLESGEIAIKEEPFELTKIINEVSSVIETQADEQCIDYSVDRGS 456

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI----KDNGPG 411
               ++      +RQ++ N+LSNA+K+    G V  +    +     + +    +D G G
Sbjct: 457 IEYDNLIGSSLHLRQILQNILSNAIKYNVQNGSVRFSYSENAADDDTVKVTFICEDTGIG 516

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           ++E         F Q S   ++A +G GLGL I +  +   GG+    S+   G E   I
Sbjct: 517 MSEEFQQIAFEPFAQESSNARTAYKGTGLGLAITKRFIEIMGGEIEFISRQNVGTEFTII 576

Query: 472 LPNT 475
           LP  
Sbjct: 577 LPFK 580


>gi|91214973|ref|ZP_01251945.1| sensor histidine kinase [Psychroflexus torquis ATCC 700755]
 gi|91186578|gb|EAS72949.1| sensor histidine kinase [Psychroflexus torquis ATCC 700755]
          Length = 359

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 152/348 (43%), Gaps = 12/348 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I + +S+L        + +    + +      + S  ++ + +   +   +         
Sbjct: 19  ITIFLSSLIALYEYIKLEIDPASIFIFALVCFLFSFLIIQLRIEYFIYKRVKSIYDSVSI 78

Query: 207 LFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           L ++ V      ++   L  E+E      K   +  + R    N  K  F+ ++SHELRT
Sbjct: 79  LDQTAVGNQRVTSDIKTLTEEVERFAKGKKLEIETLKVRE---NYRK-EFIGNVSHELRT 134

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  + G+   +    +   + +  K+Y+    +    L+ ++ ++  ++++E G   L 
Sbjct: 135 PLFTVQGYILTLLDGAI--KDKKVRKKYLSRASKGVDRLIYIVKDLDMITKLETGDLNLY 192

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
               +++++ +    +L++++ ++ I +    D  L+ V AD++ ++QVI NL+ N++K+
Sbjct: 193 IETFNILELTQNAFDLLEMKSTKREISLTFDKDYPLTFVKADKERIQQVITNLIVNSIKY 252

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
              GG   +++    G      + DNG GI +  IP +   F +        E G GLGL
Sbjct: 253 GKKGGTSEISLEQLEGGKVMFRVTDNGEGIEKENIPRLFERFFRVDKTGSRREGGSGLGL 312

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
            I + I+  H  Q  + S    G E    LP +  ++   E+  ++ Q
Sbjct: 313 SIVKHIIEAHNEQIFVESVYGIGSEFSFTLPMSDEMSE--EEIEDARQ 358


>gi|46579095|ref|YP_009903.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448508|gb|AAS95162.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232939|gb|ADP85793.1| histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 667

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 25/276 (9%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            A    DE R+ AE  +LAK+ FLA MSHE+R  LN I+G +E++    +        +E
Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTPLSG----EQRE 178

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S + LL L++++LD SR+EA +  L E   SL  ++++ +   +  A+ KNI 
Sbjct: 179 SLNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNIS 238

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------- 399
           +  ++ P +   +  D   + QV+ NL+ NAVKFT  G  + + V               
Sbjct: 239 LDFRVTPDVPDRLTGDATRLTQVLANLVGNAVKFTHKGSVI-IEVSAIPQDQTLLESLFP 297

Query: 400 -------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                      SI+D G GIA+  + T+  +F QG+        G GLGL I ++++   
Sbjct: 298 DGPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIM 357

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           GG    RS   +G          R+    P  N  S
Sbjct: 358 GGSIWARSSEGQGSSFHFT---CRLRPETPAINTPS 390


>gi|83954261|ref|ZP_00962981.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Sulfitobacter sp. NAS-14.1]
 gi|83841298|gb|EAP80468.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Sulfitobacter sp. NAS-14.1]
          Length = 515

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 173/481 (35%), Gaps = 58/481 (12%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           L  +  + + F+ ++  + +      S +  +   +  ++ +      IF +        
Sbjct: 70  LAYQPSAPVTFNLQLTFVSLLIAIAGSTVGIMVAGMFRSLASTIIGGTIFGVAVSAMHYT 129

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT--PEYLTIY 140
                 +             V  W    L+G + + +  +   L                
Sbjct: 130 GMVAYRV-----------EGVVTWDRGYLIGSVILAVVLSTAALYLGSRSARWSGLQMTG 178

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
                +I L  + ++ F       +   P             +  +  L  ++    +  
Sbjct: 179 VLTLAIIGLHFTGMAAFS---VDCIGLKPGY----------TNPEEYKLLALVIAGTATT 225

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +          + +   E    +  +E       + R  AE  + AKS F++ +SHEL
Sbjct: 226 ITLG--------GLFTYFIENRTRMESIE----ELRKARDAAEGASRAKSEFMSVLSHEL 273

Query: 261 RTPLNAILGFSE-----VIELETMGPLNNETYKEYIGDIHRSGQ-----------HLLNL 304
           RTPL  ++G++                     +++   I    +           HLL +
Sbjct: 274 RTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHLLTI 333

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+ILD + IE    +L+++      ++ +     Q  AQ K++ +          V AD
Sbjct: 334 INDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLHI--PDGSLDVIAD 391

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
                Q+++NL+ NA+KF+  G  + +      G G    ++DNG G+ + ++ ++  +F
Sbjct: 392 RGRCLQILINLVGNALKFS-KGKDIFLRAE-VDGGGFRFEVEDNGVGMEQKDLESIFQAF 449

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q   A   +E G GLGL I + +   HGG   + S + +G +     P++ V    P  
Sbjct: 450 TQIESADNRSEGGTGLGLAICKKLALAHGGDISVSSTVGKGTKFSVFFPHSLVSTGRPSQ 509

Query: 485 N 485
           +
Sbjct: 510 S 510


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+ AE     ++ F++ +SHEL+TP++ I G++  +        + +  +E +  I    
Sbjct: 288 RREAE----LQNTFISVISHELKTPVSIIKGYASTLARTD-ATFSPDMLREGLTVIEEEA 342

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L   I ++LD+SR+ AG   L     +L  +V + +     + +    E   ++   +
Sbjct: 343 DRLARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQVEGH-FEFELRLADDM 401

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             +  D + +RQV+ NL+SNA+K++  GG + +     + R   + + D G GIA  E  
Sbjct: 402 PPIHGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAER-AVVYVADQGIGIAPEEHE 460

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   F +    ++   QG GLGL +A++I+  HGG+  + S+L  G   +  LP  R
Sbjct: 461 QIFQRFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTLPLGR 518


>gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
 gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
          Length = 617

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 10/314 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSCQAEKDDL 224
              ++       I    ++   + G+++      FFT +   L +S   +        + 
Sbjct: 38  TQALLSIFIIGKINWADMIRSIVFGLISAPFVIYFFTLLVEKLERSRQDLKKLVDNLRNE 97

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E  +A+          E+ +  K++ +A++SHELRTPLN I+G S ++    +     
Sbjct: 98  VSERVLAEKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSEL----T 153

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  ++Y+  IH S   L ++ ++I+DL +I+A R ELS   + L  ++ +      L A 
Sbjct: 154 DKQRDYLKTIHISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAA 213

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +K +         L   +  D   + Q++ NL+ NAVKFT+  G V + V  T+    Y 
Sbjct: 214 DKKLCFQLIESSPLPQWLMLDYARVSQILWNLIGNAVKFTSK-GSVQLNVS-TNENNIYF 271

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + E+  V   + Q   +      G G+GL ++++I    GG   + S+L 
Sbjct: 272 IVSDTGVGIPQEELHRVFEMYYQV-KSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELG 330

Query: 464 EGVEVIAILPNTRV 477
           +G      LP   V
Sbjct: 331 KGASFTLTLPLKEV 344


>gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           BTAi1]
          Length = 1202

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/411 (21%), Positives = 167/411 (40%), Gaps = 40/411 (9%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIY------KSATLLIALSISALSNFMLPYAVFL 165
                      +  ++        +  IY       SA LL A  +   S+         
Sbjct: 162 RADSLQEAGQGVAEVLAENRHDVPFALIYQPSEDGHSARLLGAAGVQPGSSMAPWQIDLA 221

Query: 166 SF----FPVVVALSTQAIMSMHVLDISLAGMLATA-----LSFFTYITYHLFKSNVKIL- 215
           +     +P+  AL   A + + +   +++           L+    +     ++   ++ 
Sbjct: 222 AADGSPWPIRAALGAAAPIRVALDHATMSVPAGVWPEPPQLALALPVATGRERATAVLIC 281

Query: 216 ------SCQAEKDDLIAELEVAKSLS-------DETRKRAEEE---NLAKSRFLASMSHE 259
                 +  AE       +    + S       +E R+RA+     + AK+ F A++SHE
Sbjct: 282 GVNPRRALDAEHQSFFELMATQLASSFAETLAYEEERRRAKALAEIDRAKTEFFANVSHE 341

Query: 260 LRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
            RTPL  +LG  E V+       L +   +E +    R+   LL L+N +LD SRIEAGR
Sbjct: 342 FRTPLTLMLGPLEDVLTRSPALSLED---RERLEVAQRNALRLLKLVNTLLDFSRIEAGR 398

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            + + +   L  +  +   + +   +   +++     P     + D +   +++LNLLSN
Sbjct: 399 AQGAYAPTDLARLTADLAGVFRSAVESAGLKLIVDCPPLPEPAYVDREMWEKIVLNLLSN 458

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A KFT+  G + V +   S     +SI+D G GI + E+P +   F + + A     +G 
Sbjct: 459 AFKFTSS-GEIEVRL-IVSQGNFELSIRDTGTGIPQDELPKLFERFHRVADARGRTHEGS 516

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G+GL + Q +   H G   + S L +G      +P  +  + +P +  ++ 
Sbjct: 517 GIGLALVQELARLHAGSVDVTSSLGQGSTFTVRIPCGK--SHLPAEQIKAA 565


>gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 765

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 15/263 (5%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              + +L  +L   +++     ++AE  + +KS F+ASMSHE+RTP+N +LG  +++   
Sbjct: 343 MTRQKELEQQLREVQAMQRMACEQAEAASRSKSIFVASMSHEIRTPMNGVLGMLQLLRDT 402

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +    +E   + +    RS   LL +I +ILDLS++E+G+ EL+     L  +  E   
Sbjct: 403 PL----SEAQAKLVHSAERSTDALLEVIGDILDLSKVESGKMELTIKPFQLASLFSEIQS 458

Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395
           ++Q+RA  K+I++   +   L   V  D   +RQ+++N++ NAVKFT   GRV V V   
Sbjct: 459 LMQVRADAKDIQMVFAVPADLPEWVAGDAGCIRQILINIIGNAVKFTER-GRVDVEVECS 517

Query: 396 -----TSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                  G       +S++D G G  E     +   F +   A    + G GLGL I++S
Sbjct: 518 LRPSSEPGGKVVQLNVSVRDTGVGFGEEFFSRIFQPFSRNEEAGGLRQGGTGLGLAISKS 577

Query: 448 IMANHGGQFLIRSKLREGVEVIA 470
           +    GG     S L++G +   
Sbjct: 578 LAELMGGSISAHSVLKQGSQFQI 600


>gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 1216

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 156/399 (39%), Gaps = 18/399 (4%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           K+    +  +GE    R  + +  +  G       + E        + +     L+  + 
Sbjct: 375 KRFALGEGLVGEAAKERRIIRLADVPPGYLPISSAIGEAKPLNIAAVPLLHDNLLVGVVE 434

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           I +   F      FLS     +++      S  ++D  L    A            L ++
Sbjct: 435 IGSFREFTARELEFLSRAQEGLSIGINVNRSRKLVDELLEQTQAQTE-ELRVQQEELQQT 493

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSRFLASMSHELRTP 263
           N ++       +    ++       +ET +         E  +  KS FLA+MSHELRTP
Sbjct: 494 NEELEERAQMLEQQREQIRAKNREVEETSRALKLKADELERISTYKSEFLANMSHELRTP 553

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
               L     +  E       +   EY   I+ SG  LL LIN+ILDLS+IE+GR E + 
Sbjct: 554 -LNSLLILSSLLKENREHNLTDKQVEYAATINSSGNDLLTLINDILDLSKIESGRLEFNY 612

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
             I L  +  +   M    A++K ++    I+  +   +  D +  +Q++ NL+SNA KF
Sbjct: 613 EQIPLRALFDQLRTMFSPLAEQKGLDFDAIIEEGVPEEITTDGQRTQQILKNLVSNACKF 672

Query: 383 TAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           T   GRV V     +            I + D G GI+  +   V  +F Q         
Sbjct: 673 TRE-GRVAVRAHLPNSEENPLPAPAIAIQVSDTGIGISPDKHDLVFQAFQQADGTTSRKF 731

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLGL I++ +     G  L+ S+  +G      LP 
Sbjct: 732 GGTGLGLSISRQLARGLHGDVLLESEEGKGSSFTLYLPL 770


>gi|308049363|ref|YP_003912929.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
           balearica DSM 9799]
 gi|307631553|gb|ADN75855.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
           balearica DSM 9799]
          Length = 788

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 133/259 (51%), Gaps = 5/259 (1%)

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +L    + ++LI  L   +  +     RA   N AKS FLA+MSHE+RTPLN I GF  
Sbjct: 276 SVLYGMMDNENLIDSLREQRDKNQALTARANHANQAKSLFLANMSHEIRTPLNGISGFVS 335

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   +    ++  +EY+     +  +L  +I +ILD S+IE+G   L  + I ++ ++
Sbjct: 336 LLKRTRL----SQEQREYVNHCANTVNNLTGIIGDILDFSKIESGEMVLENAVIDVLPLL 391

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            +   M+Q +    + +I   I     +++ DE  ++QV++NLLSNA+KFT   G++ +T
Sbjct: 392 HDVYSMVQNQNLAHHNDIRFDIGAMPQTLYGDEVRLKQVLVNLLSNAIKFT-QYGQIRLT 450

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +    G    I++ D G G+   ++  +   F Q  ++I     G GLG+PI + I  + 
Sbjct: 451 MAVPDGHTLEITVSDTGIGMCPSKLEHIRKPFEQADLSITKEFGGTGLGIPIIERIANHM 510

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GG   I S   +G      
Sbjct: 511 GGSLEIESAEGQGTTCRVT 529


>gi|261419916|ref|YP_003253598.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766730|ref|YP_004132231.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376373|gb|ACX79116.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111596|gb|ADU94088.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 457

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 135/304 (44%), Gaps = 11/304 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + +   ++    +     +  +   L      T  L + +  +       D+L      
Sbjct: 162 FIVVGVLSVAITVLTIAFFSRAITMPLLRMKQATEALSRGDFSVRLEMKGNDELAQLGRA 221

Query: 231 AKSLS-DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++L+ D    +       +S FLAS+SHELRTPL  + G++++        L+ E    
Sbjct: 222 IQTLANDLAYLK-----QERSEFLASISHELRTPLTYVKGYADIARR---PHLSEEQRAN 273

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I+   + +  ++ ++ +L+++E   +++ +   +L   + +    L+   QEK++ 
Sbjct: 274 YMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLS 333

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +  P       D +   QV++N+L NA K+   G  V V V     +G  I++ D G
Sbjct: 334 LVCQC-PGSVMAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQK-QGIVIAVSDEG 391

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++P +   F +   +      G GLGL IA+ I+  HGG    RS+  +G  ++
Sbjct: 392 TGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTIL 451

Query: 470 AILP 473
             LP
Sbjct: 452 ITLP 455


>gi|161522571|ref|YP_001585500.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189348557|ref|YP_001941753.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346124|gb|ABX19208.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189338695|dbj|BAG47763.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 760

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 9/278 (3%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E      +L+ A +  D       + N AK +FLA + HELR PL  I    E++    
Sbjct: 329 TEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSRE 388

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                NE     I  I R   H++ LI+++LD+SRI  G+ EL + A+ + DIV   + +
Sbjct: 389 GHATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRIGDIVDRAVEV 443

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                +++   +   ID  +     D   + QV+ NLL+NA K+TA GG + + V  + G
Sbjct: 444 ASPLLEQRRHRLHVDIDADV-RCHGDPVRLSQVVANLLTNAAKYTAPGGDIGLHVARSDG 502

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D+G GI    + ++   F +        + G+G+GL + +S +  HGG    
Sbjct: 503 DTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGLALVKSFVMLHGGTVRA 562

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
            S     G      LP  R      + +    +++  A
Sbjct: 563 DSAGPGLGSTFTVTLPEYR--PTALDADAREPEHRPAA 598


>gi|91781778|ref|YP_556984.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
 gi|91685732|gb|ABE28932.1| amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC
            sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
          Length = 1490

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 128/252 (50%), Gaps = 9/252 (3%)

Query: 226  AELEVAKS-LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A +E A+S      R  AE    AK  F A MSHE+RTP+N +LG  EV+E   +    N
Sbjct: 821  ASVEHARSDELARARDLAEAAARAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----N 876

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +G IH S   LL +++++LD S+IEAGR  +   +I + ++V   + +L  RA 
Sbjct: 877  TDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAH 936

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            EK +++   I P ++ ++  D   +RQ++ NLL NA+KFT  G   V V+V   +   Q 
Sbjct: 937  EKGLKVRVDIAPDVAATLRGDSVRLRQILFNLLGNAIKFTPQGEVDVRVSVFAQADGVQT 996

Query: 403  IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +   ++D G GIA      +   F Q   +      G GLGL I + ++   GG   + S
Sbjct: 997  LEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFGGTGLGLTICRKLIDLMGGSLALHS 1056

Query: 461  KLREGVEVIAIL 472
            +   G  +   L
Sbjct: 1057 EPGSGTRMTVRL 1068


>gi|323482860|ref|ZP_08088261.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323403785|gb|EGA96082.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 374

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 149/353 (42%), Gaps = 16/353 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV------VVALSTQAIMSMHVL 185
               Y  +      +  ++  ++    L    +   F +       + +    I+ + V 
Sbjct: 11  TNIFYSAVITCLIEVFLIANVSMIVSYLKETRYADSFLLQMTEINTLMVLIYVILGIAVF 70

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAKSLSDETRK-- 240
            ++   +L  AL +   I+  +   +   L+   E    D+          + ++ R+  
Sbjct: 71  TVTFLTLLEKALRYIGKISSAIQNISEGDLNTTVEVIGDDEFTQMAVNLNKMMEDIRRLM 130

Query: 241 -RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +  E    K+  + +++H+LRTPL +I+G+ E++  +    +  E  K+YI   +   +
Sbjct: 131 DKEREAERTKNELITNVAHDLRTPLTSIIGYLELLSGKV--QIPQEMQKKYIDIAYAKSK 188

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI ++   +++  G+  +    + ++ ++ + +        +KN+    + +    
Sbjct: 189 RLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSFVDKNLSYELQSNVPGK 248

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD   + ++  NL++NA+K+ A G RV V +  T      +S+ + G  I   E+P 
Sbjct: 249 VITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEP-TVTVSVTNYGYVIPADELPL 307

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +  +   G GLGL I+++I+  HGG   + S L  G      L
Sbjct: 308 IFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLN-GTVFTVKL 359


>gi|320158132|ref|YP_004190510.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933444|gb|ADV88307.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1176

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                 Y      +S              +   +  ++     +  A+    A+ RFLA+
Sbjct: 580 LQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIAAQHEAQSAVKARERFLAT 639

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPL A  G  +++   +     +E  KE +    +S  HL  L++E+LD S++E
Sbjct: 640 MSHELRTPLAATYGLLDLVATHS----TSERDKELVLRAKQSLNHLNLLVDEVLDYSKLE 695

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILN 374
           AG  ++  +   L+ ++ + +   + +A  K ++    I P SL     D+    Q++ N
Sbjct: 696 AGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFSLRWAMIDDLRFNQIVSN 755

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KFT   G + +T      R   ++IKD G G+ + ++  +   F Q   +I   
Sbjct: 756 LISNAIKFTEQ-GDITLTAQVVKER-LLLTIKDTGIGMTQEQLANIFKPFVQADDSITRQ 813

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             G GLGL I + ++   GG   + S L  G +V   LP T      PE
Sbjct: 814 FGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPLTPCEGAYPE 862


>gi|256112822|ref|ZP_05453743.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|265994265|ref|ZP_06106822.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|262765378|gb|EEZ11167.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
          Length = 438

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   Y     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAYLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 849

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 12/238 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G ++++    +     E  + +   I  SG+ LL +IN+ILD 
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEALLVIINDILDY 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA R  L      L   + E  ++LQ +A+ K I++    D  L      D   +RQ
Sbjct: 398 SKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V+ NL+ NAVKFTA  G V + V             ++++D G GIA   +  V   F Q
Sbjct: 458 VLTNLIGNAVKFTAA-GHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIP 482
                    +G GLGL I + ++    G   + S+   G        LP        P
Sbjct: 517 IEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAADDEAAPP 574


>gi|33598500|ref|NP_886143.1| phosphate regulon sensor protein [Bordetella parapertussis 12822]
 gi|33603444|ref|NP_891004.1| phosphate regulon sensor protein [Bordetella bronchiseptica RB50]
 gi|33574629|emb|CAE39280.1| phosphate regulon sensor protein [Bordetella parapertussis]
 gi|33577568|emb|CAE34833.1| phosphate regulon sensor protein [Bordetella bronchiseptica RB50]
          Length = 436

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 158/442 (35%), Gaps = 21/442 (4%)

Query: 50  PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM--------NSDIKIG 101
             +  F  ++A +  W   NP    W L   A+ A  L    ++                
Sbjct: 7   LFMIAFWAVMALLAQWLIGNP--AGWLLFGAAMAAMLLWRSWRLHLVSRWAHDPESAPPA 64

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            V  W   L                 E         ++  +A  L    ++   +F + +
Sbjct: 65  AVGPWDDILAPLYRYTRA-----RARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDW 119

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A  ++   + + L        ++L++  A           +    L + ++     +   
Sbjct: 120 ANRMARRHLGLRLPADR--GHNLLNLLRAPEFVAYAHRGHWPEPILVRLSLNG-QERVMM 176

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L       + L      + E     +  F+A++SHELRTPL  + GF E +       
Sbjct: 177 IHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVLAGFLETLRELPAEA 236

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L  E   +Y+  +H   + +  ++ ++L LS +E+   E    A+ +  ++R     ++ 
Sbjct: 237 LPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLES-SPEADPLAVDVGALLRTARQQVE- 294

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A      +F+        V      +   + NLL+NAV++T  GGR+ V     +    
Sbjct: 295 -ALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGRITVRWRRGADGEA 353

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D G GI    +P +   F +       A  G GLGL I + I   H    LI S+
Sbjct: 354 LYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKHIAMRHDADLLIDSE 413

Query: 462 LREGVEVIAILPNTRVLNFIPE 483
             +G       P  RV    P+
Sbjct: 414 PGKGSTFTLRFPAERVTGEDPD 435


>gi|257094337|ref|YP_003167978.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046861|gb|ACV36049.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1074

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 158/331 (47%), Gaps = 10/331 (3%)

Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
           ++  P  ++L  +    + V    +   +    S    I   L + N         +D L
Sbjct: 372 VATAPAELSLQRKDGSRVAVFSSHVLVQIPGRPSEIFCIDVDLAERNRAADELAQHRDHL 431

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              ++   +   E ++ AE  + +KS FLA+MSHE+RTP+NAI+G + +++ E      N
Sbjct: 432 EELVQSRTAELAEAKEAAEAASRSKSAFLANMSHEIRTPMNAIIGLNHLLQQEI----TN 487

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +  +  I+ + QHLL ++N+ILDLS+IE GR  L E+  SL+ ++   + ML  R++
Sbjct: 488 PKQRAQLNKINDAAQHLLGIVNDILDLSKIEVGRLTLEETDFSLLRVIDHTLSMLGERSR 547

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
            K +++ + IDP++   +  D   + Q++LN +SNAVKF+   G++ +       +G   
Sbjct: 548 AKGLQLLRDIDPAIPVPLRGDPLRLGQILLNFVSNAVKFS-DHGQITLRARLIEMQGKVA 606

Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G G+   +   +  +F Q   +      G GLGL I + + A  GG+  + 
Sbjct: 607 TLRLEVEDRGIGLTGAQQARLFAAFSQADESTTRKYGGTGLGLTICRRLAAMMGGEVGVV 666

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S+   G      +   RV N  P        
Sbjct: 667 SEPGVGSTFWTTVRLGRVDNARPAFTARDAD 697


>gi|163747505|ref|ZP_02154855.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161379183|gb|EDQ03602.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 491

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 165/459 (35%), Gaps = 24/459 (5%)

Query: 24  GLEYPSKMDF-DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
             + P   D    + +  + +    +     +       +  ++ +  +     ++    
Sbjct: 10  PTQSPLLADATKVQQMRDYSQVGVSLFWQRQMIFAAAICLSAFYYELWLSISTLVLIAIS 69

Query: 83  YAANLSLGKKVMNSDIKIGEVYV-WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
              +  L  ++     +   +   +   + +G +      +   L            +  
Sbjct: 70  ETFDYLLFLRITRWRGRSPRLARVFMNRIYIGTVLSAGVISYFALGIALQQGATTHFLPL 129

Query: 142 SATLLIALSISALSNFMLPYAVF------LSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                 AL  S  +  +LP  +       ++F  + +         +     +    +  
Sbjct: 130 FFLFAAALFASMNNYHILPVLMLRLAIYGVTFLFIPIWDIVSTGAGIESELWTQLFTVVF 189

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
            L F    +    K     L    E  +   + ++                  K+ F+++
Sbjct: 190 VLYFIVDCSRIFMKMYRTNLRQLEELKEEHEKTKI--------------AFKVKTEFVST 235

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTP+ +I G  ++     +G +     ++ +    R+   L ++INEILDL + E
Sbjct: 236 ISHELRTPMTSIKGSLDMACAGVLGDMT-PQMEKVLKIAQRNSARLTSIINEILDLQKFE 294

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG+       + +  I+ + I + Q  A    + +        + +  DEK ++QV+ NL
Sbjct: 295 AGKVSFDIEPLEVQTIIEDAIELNQAFASNLGVTLRYAKPSDAAGIATDEKRLQQVMSNL 354

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           LSNA KF+  G  V VT          IS+ D G G+AE E   V   F Q   + + A 
Sbjct: 355 LSNAAKFSPAGSTVKVT-SVKQDEKVRISVIDEGIGLAESEREKVFDEFSQIDSSDQRAV 413

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            G GLG+ I++ I+   GGQ         G      +P 
Sbjct: 414 GGTGLGMNISKRIIEALGGQIDYFKNEGPGTTFYIDMPL 452


>gi|254932175|ref|ZP_05265534.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|293583732|gb|EFF95764.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|332313012|gb|EGJ26107.1| Sensor histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 459

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 139/306 (45%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++       L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSVTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHL-YEKATYVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI + ++  +   F + + +    E   GLGL I Q I+  H G+  ++S   +G   
Sbjct: 393 GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 KVKLPK 458


>gi|56420224|ref|YP_147542.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380066|dbj|BAD75974.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 457

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 135/304 (44%), Gaps = 11/304 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + +   ++    +     +  +   L      T  L + +  +       D+L      
Sbjct: 162 FIVVGVLSVAITVLTIAFFSRAITMPLLRMKQATEALSRGDFSVRLEMKGNDELAQLGRA 221

Query: 231 AKSLS-DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++L+ D    +       +S FLAS+SHELRTPL  + G++++        L+ E    
Sbjct: 222 IQTLANDLAYLK-----QERSEFLASISHELRTPLTYVKGYADIARR---PHLSEEQRAN 273

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I+   + +  ++ ++ +L+++E   +++ +   +L   + +    L+   QEK++ 
Sbjct: 274 YMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLS 333

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +  +  P       D +   QV++N+L NA K+   G  V V V     +G  I++ D G
Sbjct: 334 LVCQC-PGSVMAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQK-QGIVIAVSDEG 391

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI   ++P +   F +   +      G GLGL IA+ I+  HGG    RS+  +G  ++
Sbjct: 392 TGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTIL 451

Query: 470 AILP 473
             LP
Sbjct: 452 ITLP 455


>gi|332995149|gb|AEF05204.1| sensory box histidine kinase/response regulator [Alteromonas sp.
           SN2]
          Length = 861

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            ++      ++A       +I      + + ++        L+ +L + K L+ + + +A
Sbjct: 293 WLVMEKPTEVIAYLARTKHFIALGFAVAALFLIGLAYLLIRLLNQLNLEKELAIKAKNKA 352

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
                +K+ FLA MSHE+RTP+N + G  ++    T+G  N +   + I     S   L 
Sbjct: 353 NSAEKSKADFLARMSHEIRTPMNGVYGLLQI----TLGERNYKKINDNIEQAITSFSLLS 408

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            +I+++LD S+IEAG+ ++ E+   L  ++ +   M+   A  K+IE++  +DP     V
Sbjct: 409 RIIDDVLDFSKIEAGKLDMVEAPFRLDSLLNQVGKMMGRAAYGKHIELWIDVDPKCPQHV 468

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEI 417
             D   + QVI NL+SNA+KFT+  G V+++V   +           ++D G G+ E + 
Sbjct: 469 VGDAVRLNQVISNLISNAIKFTSR-GEVNLSVELLNENEDTVQLGFEVQDTGIGMTEKQA 527

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             V  +F Q S    S   G GLGL IA+ ++    G+  + S+  +G +   
Sbjct: 528 NQVFGAFTQASRDTNSKFGGTGLGLSIAKQLVEMMHGKIGVVSQQGKGSKFHF 580


>gi|260438539|ref|ZP_05792355.1| histidine kinase [Butyrivibrio crossotus DSM 2876]
 gi|292809128|gb|EFF68333.1| histidine kinase [Butyrivibrio crossotus DSM 2876]
          Length = 475

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 123/302 (40%), Gaps = 14/302 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-- 240
            +    +  +L        ++ Y L      +        D      + K    E +   
Sbjct: 171 RISIAVMIALLLVFSGILVFVIYKLTSPAKDMKEAILSLSDGDKNARIKKQTIKEYKDIG 230

Query: 241 --------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                   R E  + ++  F++++SHEL+TP+ ++   ++ +      P+  E YKE++ 
Sbjct: 231 DAVNVLLDRLESIDGSRDEFVSNVSHELKTPMTSMKVLADSLLATENAPI--EMYKEFMQ 288

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           DI         +I ++L+L R +  R  L+   + + +++   +  L+  A + NIEI  
Sbjct: 289 DIAEEIDRENEIIGDLLNLVRTDGERAVLNIETVDVNELMEVVLKRLKPIALKNNIEIIF 348

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           +      +   D      V+ N++ NA+K+    G V +T+     +  Y+ + D+G GI
Sbjct: 349 E-SMRPVTASIDRVKFIIVLTNIIENAIKYNHPEGWVKITLNA-DHKFFYVDVSDSGIGI 406

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     V   F +   A      G GLGL I ++I+  H G     SK  EG      +
Sbjct: 407 PEECKDHVFERFYRVDKARSRETGGTGLGLAITKNIVLLHKGTIKFYSKENEGTTFNIRI 466

Query: 473 PN 474
           P 
Sbjct: 467 PL 468


>gi|254295071|ref|YP_003061094.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043602|gb|ACT60397.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 1120

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 30/339 (8%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMH-------------VLDISLAGMLATALSFFTYITY 205
               + L+   +   L      +                    +  ++A    +   + +
Sbjct: 566 FVMLMCLTMLALAGVLYLIYWFNGGWNQSMPSQSQGLIRSVFIVFSLIAGVTVWIVILAH 625

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKS---LSDETRKRAEEENLAKSRFLASMSHELRT 262
              +S  +       K  L+ E+E       L  + +  AE  N AKSRFL S+SHE+R+
Sbjct: 626 KSRQSAFRETEFHMSK--LLEEIEAHNETDGLLQKAKVEAEAANNAKSRFLVSVSHEIRS 683

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PLN+I G+S+++E   +     ++ K     I RS +HL +L++ ++++S+IE G  +L 
Sbjct: 684 PLNSIYGYSQLLERGGV-----KSAKSAGSYIRRSSEHLTDLVDGLMEISQIEGGVIKLE 738

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381
              I     + + + ML+  A  K ++        +   V +D K +RQ+++N+LSNA+K
Sbjct: 739 RELIRFPGFLDDIVAMLRPSAVSKGLKFNFNTHGMMPEFVRSDPKRLRQILINVLSNAIK 798

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V+  V +   +     I D+G GI   +   +   F +   A      G+GLG
Sbjct: 799 FTPD-GEVNFDVHYR-NQIARFEISDSGVGIDPKDYERIFEPFERVDTA----NPGIGLG 852

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           L I +++    GG   I SKL +G +    L  ++ +  
Sbjct: 853 LAIIRALTHVMGGDISIESKLGKGAKFTIKLMLSQPMQE 891


>gi|229894116|ref|ZP_04509302.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
 gi|229704001|gb|EEO91014.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
          Length = 704

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    AE+ + +KS FLA++SHELRTPL  I+G  ++++ + +     +    
Sbjct: 208 KMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PQGVDR 263

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++  S  S ++++            +K + 
Sbjct: 264 LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLG 323

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G + + V           ++D 
Sbjct: 324 LYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQV-RVRDCYLEFRVRDT 381

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   EI  +   F Q    ++   QG GLGL I + ++    G   + S+L  G   
Sbjct: 382 GVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIF 441

Query: 469 IAILPN 474
              +P 
Sbjct: 442 AIRIPL 447


>gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 777

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 123/254 (48%), Gaps = 8/254 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V + +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVVTDGTRLRQILWNLISNAVKFTQK-GQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHESTQ 490
           V   + ED  E+  
Sbjct: 508 VAEEV-EDTFENDD 520


>gi|229084949|ref|ZP_04217201.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44]
 gi|228698265|gb|EEL50998.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44]
          Length = 330

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 127/244 (52%), Gaps = 9/244 (3%)

Query: 239 RKRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + A+E N     +  F++++SHE+++PL +I GF+  ++ + +    +E  K Y+  I 
Sbjct: 93  NEMADELNTMERMRQEFVSNVSHEIQSPLTSIKGFALALQDDYL---TDEKRKHYLTIIE 149

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                L  L + +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++
Sbjct: 150 TETTRLSKLSHNLLKLTLLESEEYVPERVTYRLDQQLKQIVLNCEPLWSEKEIELELSLE 209

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                + ADE+ M QV +NLLSN++KFT  GG + + +   +G    + I+D G GI+E 
Sbjct: 210 K--MYITADEESMSQVWINLLSNSIKFTPNGGTITIQL-MQNGEQAEVRIRDTGIGISEE 266

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +   F +   +   A  G GLGL I + ++  H G+  + S + +G E I  +P++
Sbjct: 267 QRGHIFERFYKADSSRNRAFGGSGLGLAIVKKVIDLHQGEIQVESVVGDGTEFIISIPDS 326

Query: 476 RVLN 479
           +++N
Sbjct: 327 KLIN 330


>gi|168187463|ref|ZP_02622098.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
 gi|169294658|gb|EDS76791.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
          Length = 463

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              K+ F+AS+SHELRTPL +I G++  +      P N   +++ +  I      L NL+
Sbjct: 239 EKLKTEFIASISHELRTPLTSIKGWTVALS--LCDPNNKSEFEDGLTIIEEETDRLSNLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            E+LD S++ +G+  L +  + + +++      LQ RA + NI +  +    + +++AD 
Sbjct: 297 EELLDFSKLSSGKITLKKDYVDIHELLIYLQKQLQPRASKDNIHLSLECKNEIPNIYADI 356

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             ++Q  +N+L NA+KFTA  G+V +T+  ++     I+IKDNG GI   ++P V   F 
Sbjct: 357 NRLKQSFMNILDNALKFTASDGKVKITLS-SNKDSVIINIKDNGCGIPLDDLPRVTEKFY 415

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +G  +        G+GL I   I++ H G   I S+  +G EVI  LP  
Sbjct: 416 KGQNSKSKN----GIGLSICSEIISLHNGNLQILSEENKGTEVIVCLPLA 461


>gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1062

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 141/320 (44%), Gaps = 10/320 (3%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           +   +    ++       +L    A + A  L    +           +     E   L 
Sbjct: 615 ALRTLRAGGASTVRRQTRLLRADGAALHARTLFTLLHDASGQPWRLAGVAEDITEHRRL- 673

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                    S+    RAE  N AK+ FL+ MSHELRTPLNA++GF++++ L+   PL   
Sbjct: 674 -------EESERALHRAEAANRAKTEFLSRMSHELRTPLNAMIGFAQLLGLDRDPPLA-P 725

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +E+   + R+G HLL +IN+ LDL+R+E G  +L    + L   V   I M+   A+ 
Sbjct: 726 HQREWSTQMLRAGWHLLAMINDTLDLARLETGAVQLDLRPLDLRSAVGASIEMIATAAER 785

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
             + +  ++ P   +V AD+  ++QV+ NLLSNAVK+   GG V V           + +
Sbjct: 786 MGVTVDAELAPEALAVLADDTRLKQVLTNLLSNAVKYNRPGGTVVVESLAPDDEHVQLRV 845

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G G+   ++  +   + +      +  +G G+GL I++ +    GG     S    G
Sbjct: 846 RDTGLGMTPEQVAGLFQPYNRLGREQST-IEGTGIGLVISRRLAELMGGTLDGDSTAGSG 904

Query: 466 VEVIAILPNTRVLNFIPEDN 485
                 LP   ++   P   
Sbjct: 905 SVFTLTLPRAELVAGAPPST 924


>gi|307709234|ref|ZP_07645693.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
 gi|307620180|gb|EFN99297.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
          Length = 449

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + ++K  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDQIRGQDEDKKYELVRDYPITSVWIEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+L+NA+K++  GG++ VT+  T  +   +SI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVTMKTTDDQMI-LSISDQGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|254423446|ref|ZP_05037164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190935|gb|EDX85899.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 672

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 130/262 (49%), Gaps = 11/262 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           +A +L D TR+ A   N AKS+F++++SHELRTPL  I  F E +  E    L+ +  +E
Sbjct: 377 MAITLQDITREVA--LNEAKSQFISNVSHELRTPLFNIKSFIETL-HEYGEDLSEQERRE 433

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           ++   +     L  L+N++LDLSR+E+ R     SA+ +   + + +   QL A++K IE
Sbjct: 434 FLATANNETDRLTRLVNDVLDLSRLESNR-RYEFSAVEVHQPIDQVLRTYQLNAKDKQIE 492

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYI 403
           +   I+ +L +V  +   + QV  NL+ NA+KFT  GG+V +             +   I
Sbjct: 493 LASDIESALPAVLGNYDLLLQVFGNLVGNALKFTPAGGKVVIRAYHAPSAQPNLLQSVRI 552

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI + +   +   F +         +G GLGL I ++IM  H  Q  +  ++ 
Sbjct: 553 EIGDTGIGIDDEDQAAIFERFFRVEN-RVHTLEGTGLGLSIVKNIMDKHNSQINLVGEVG 611

Query: 464 EGVEVIAILPNTRVLNFIPEDN 485
            G      LP   +++   +  
Sbjct: 612 VGTTFWFDLPVYDLVDERSDSQ 633


>gi|227873345|ref|ZP_03991606.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
 gi|227840823|gb|EEJ51192.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
          Length = 469

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 138/345 (40%), Gaps = 23/345 (6%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              I   +   I    + L +      + ++   + +       +   +  I+   +   
Sbjct: 147 AYLILHKSVAGIEQEKAMLFSIFYRGFLAVAVLSLSIFFVFYFWVYRPLGKITAGAVHYA 206

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           A  +   I+                 D++    +    +++E     ++ +  + +F+A+
Sbjct: 207 AGEYLYRISVGGG-------------DEMSYLADTLNFMAEE----IQKSDDYQRQFIAN 249

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SH+ R+PL +I G+ E +     G +  E  ++Y+  +    + L  L   +L L++++
Sbjct: 250 VSHDFRSPLTSIKGYLEAMLD---GTIPKEAEEKYLLRLISETERLSKLTQSMLSLNKLD 306

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
            G   L+ S   L  ++RE     +++ Q+K +            V  D   ++QV  NL
Sbjct: 307 QGS-SLNRSNFDLNRMIREVCASFEMQCQKKKLGFSLVFAEKKQMVNGDYPKIQQVFYNL 365

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           L NAVKF+     + +      G    + IKD G GI + ++  +   F +  I+    +
Sbjct: 366 LDNAVKFSKEDSEIQIRTEQ-KGTKVLVGIKDQGIGIPKKDLGKIWERFYKTDISRGKDK 424

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVLN 479
            G GLGL I +SI+  HG      S    G E    LP   RV  
Sbjct: 425 AGTGLGLAIVKSIITAHGENIDCVSTEGVGTEFSFSLPAMERVEE 469


>gi|328948861|ref|YP_004366198.1| histidine kinase [Treponema succinifaciens DSM 2489]
 gi|328449185|gb|AEB14901.1| histidine kinase [Treponema succinifaciens DSM 2489]
          Length = 472

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 141/343 (41%), Gaps = 20/343 (5%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATAL 197
           ++ +  + + +  +   +  +     +S   +  + L     +S   +   L    AT  
Sbjct: 143 VFSALRISMPIEETVFFSSSIKNIFVISTILIFALVLIVSFYISSKTVRPILLMKKATEE 202

Query: 198 SFFTYITYHLF----KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
                  +HL     +   ++        D I +   +    ++ RK           F+
Sbjct: 203 YAKGNFDFHLNISSPQEIAELAQSFNSMTDRITQNIQSLKKVEQIRK----------DFV 252

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A++SHEL+TP+ +I GF+E +  +  G    ET K ++G I+   + L+N+I ++L LSR
Sbjct: 253 ANVSHELKTPVTSIKGFTETLLDD--GINEPETAKHFLGIINTQCERLINIIEDLLTLSR 310

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E     L      L+ I ++    L+  A EK I I          +  +   + QVI 
Sbjct: 311 LETDDGVLETVKTDLVQIAKKACSNLESAATEKQIRINFSSSKKEIFIKGNPGLLEQVIT 370

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+ N+VK+      V  ++   +     I ++DNG GI +     +   F +       
Sbjct: 371 NLIDNSVKYCPEKSIVFCSLS-ENSGKAKIIVEDNGNGIPDEYKDRIFERFYRVDKGRSR 429

Query: 434 AEQGVGLGLPIAQSIMANHGGQF--LIRSKLREGVEVIAILPN 474
              G GLGL IA+ I+  HGG      RS  ++G      LP 
Sbjct: 430 EHGGTGLGLSIARHIVNIHGGTIKETGRSDKKKGAHFEIELPL 472


>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
 gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
          Length = 1325

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 247  LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             AK +F A++SHE RTPL  I+  +E +      P  +  ++  +  I+R+      LI+
Sbjct: 797  QAKLQFFANISHEFRTPLTLIISQTEALLQ---SPSLSPYFRVRLQRIYRNTFQFRELIS 853

Query: 307  EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            E+LD  ++E G+  L    + +I  +RE     Q +AQ KNI    + D   +  WAD +
Sbjct: 854  ELLDFRKMERGKLTLHVCQLDVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRR 913

Query: 367  GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             +R+VI NLLSNA K+T +GG+V +  G T      I + D+G GI E  +P V   F Q
Sbjct: 914  QLRKVISNLLSNAFKYTPVGGKVELVAGVTEKG-IEIKVIDSGEGIPEESLPCVFDRFYQ 972

Query: 427  GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                + S+  G G+GL +A+ I+  H G   ++S +  G     +LP  
Sbjct: 973  ADTKMSSS--GSGIGLALAKGIVELHHGVISVKSVMGYGSIFTVLLPVE 1019


>gi|15614826|ref|NP_243129.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174882|dbj|BAB05982.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 473

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 4/240 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R ++   +++  ++++SHELRTPL  I  ++ +++         E  K+    IH     
Sbjct: 231 RLKQLTESRNELISNISHELRTPLTYIKAYAALLKKR---EGLTEDGKDQAMIIHEEAIR 287

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  L+ ++ +L ++E        +   L  +V   + +  +  ++KN+ +    + S   
Sbjct: 288 MERLVGDLFELMKLEERNVSFHLTKTDLEAVVERSVRVSTIEGKKKNVTLAIHKEHSPLF 347

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   + QV+ NLLSNA++ T   G +++T+ +   R   IS+ DNG GI   ++P +
Sbjct: 348 SLVDSGRLEQVMQNLLSNAIRHTPSNGTINLTL-YAEDRKNVISVSDNGEGIDSDKLPFI 406

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +  S   G GLGL I + ++   GG   + S+  +G     I      +  
Sbjct: 407 WDRFYRADRSRNSKYGGTGLGLAITKQLVEQMGGTIFVDSEKGKGTTFTLIFAKEEEVEA 466


>gi|332296827|ref|YP_004438749.1| integral membrane sensor signal transduction histidine kinase
           [Treponema brennaborense DSM 12168]
 gi|332179930|gb|AEE15618.1| integral membrane sensor signal transduction histidine kinase
           [Treponema brennaborense DSM 12168]
          Length = 624

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 15/254 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R +     +  F+A++SHEL+TP+ +I GF E ++   +     ET K ++  + +    
Sbjct: 372 RLKRLERVRKDFVANVSHELKTPITSIKGFIETLQDGALNE--PETAKRFLSIMDQQSTR 429

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF--QKIDPSL 358
           L+N+I ++L LS++E   + L+    ++ + V + ++  Q+ A  K+I        +   
Sbjct: 430 LINIIEDLLTLSKLEQTGFTLATQQTTVQECVADVLLSQQIAADAKHIAFRQTYVPENEP 489

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------QYISIKDNG 409
             +  +E    Q + N+++NAVK+   G  V V+      +            I I+D+G
Sbjct: 490 IRIAVNEGLFEQALGNIVNNAVKYCPDGSTVSVSAERIPAQEGTAARRYPAVKIVIEDDG 549

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE--GVE 467
            GI E     +   F +          G GLGL IA+ I+  HGG      +     G  
Sbjct: 550 AGIPEEYRKRIFERFFRVDKGRSRETGGTGLGLSIARHIVELHGGTIRACGRPGGEPGAC 609

Query: 468 VIAILPNTRVLNFI 481
               LP+      +
Sbjct: 610 FEITLPDRSTEPAV 623


>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1353

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I L   +      F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIVVLPIWYKTWWAIVLFLAIFIGFITFVFRFFWMRKSMEAELEI--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKAKRENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1353

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I L   +      F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIVLFLAIFIGFITFVFRFFWMRKSMEAELEI--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|239817208|ref|YP_002946118.1| histidine kinase [Variovorax paradoxus S110]
 gi|239803785|gb|ACS20852.1| histidine kinase [Variovorax paradoxus S110]
          Length = 1211

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/390 (25%), Positives = 175/390 (44%), Gaps = 37/390 (9%)

Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST------- 176
            +     T    +L +      ++A+    L    L      +      +          
Sbjct: 602 FSWRYLDTGLGHFLLLMLIIVPVLAVVFGVLYQQELRALGESALQLASQSELAEALAGVQ 661

Query: 177 -QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK--------ILSCQAEKDDLIAE 227
             A+ S  +       ++A  ++++  + +   K   +        ++            
Sbjct: 662 QSALRSGFLKAYMALLVIAGVVAWWLVLAHQSRKVAQEESNRQTHLLMREIELHRATDRA 721

Query: 228 LEVAKSLSDETRKRAEEE--------------NLAKSRFLASMSHELRTPLNAILGFSEV 273
           L+ AK  ++E R+ AE+               N AKSR+++++SHELRTPLN+ILG++++
Sbjct: 722 LQSAKQTAEEAREVAEQAKLAADEARRAADQANQAKSRYISAISHELRTPLNSILGYAQL 781

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  +   P      ++ +  I R G+HLL+LI   L ++ IEAG+  L    +   D +R
Sbjct: 782 MGEDHSVP---PHRQQAVAVIKRGGEHLLSLIEGTLAIAHIEAGKLTLHARPMRFADTLR 838

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           E   M +L+A EK +    +   SL   V ADEK + Q+++NLL NA+KFTA+ G V + 
Sbjct: 839 ELADMFELQAAEKGLRFRFETTGSLPEVVRADEKRVCQILINLLGNAIKFTAV-GEVRLR 897

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS-IAIKSAEQGVGLGLPIAQSIMAN 451
           + + +     + I+D GPG+   +I  +   F +G   A  +A  G GLGL IA+ +   
Sbjct: 898 LSY-AREFASVEIEDTGPGMTAEDIERIFEPFTRGDAAAAAAATPGAGLGLTIAKMLTDL 956

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            GG+  +RS   EG      L   RV +  
Sbjct: 957 MGGEMKVRSTPGEGSLFCVRLFLPRVHDAA 986


>gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4]
          Length = 343

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 4/322 (1%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
                L   V +    + +     + ++  +L   L   +    S    I    F   V+
Sbjct: 26  YIRMFLSSEVLVLLTFITLLAGAISFVTHLLLINPLLKAVKGVSSEAKRIAEGEFDVEVR 85

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
               + E  +L        S   E     +E    K+  +A++SH+LRTP+ +I    E 
Sbjct: 86  ETGPK-EIQELAKNFNTMSSRVKEMIDDVKESERLKTELIANVSHDLRTPVASIRSHVEA 144

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +  + +   + +T ++Y+  I +    L  L+ E+L LS++E G          + +++ 
Sbjct: 145 LIDQILT--DEKTREQYLSTIKQESVKLSELLEEVLQLSQLERGSVPFHPERTKVDELLV 202

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +   +  A++K IE   +ID    S+    + + +V+ NL+ NA++++  G  + + V
Sbjct: 203 SVLSSFERMAEKKGIEFVVQIDEREDSILIVPQQIHRVLSNLIENAIRYSNNGRTITIIV 262

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
              SGR     + D G GI   E   +   F +   +   A  G GLGL I +  +  HG
Sbjct: 263 E-DSGRATIFRVTDEGEGIPFEEQKNIFDRFYRVEKSRNQAYGGSGLGLAICKEFVTLHG 321

Query: 454 GQFLIRSKLREGVEVIAILPNT 475
           G+  ++S    G E    +P  
Sbjct: 322 GEIGVKSVKGWGSEFWFTIPKE 343


>gi|163753370|ref|ZP_02160494.1| two-component sensor histidine kinase, phosphate regulation [Kordia
           algicida OT-1]
 gi|161327102|gb|EDP98427.1| two-component sensor histidine kinase, phosphate regulation [Kordia
           algicida OT-1]
          Length = 347

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 143/336 (42%), Gaps = 23/336 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L  +++++ F   V         +    + +          F  + + + +   + + 
Sbjct: 11  FALRSSLYITLFATTVLTFLLYFFGIKNFFVPILFFALCFTFCFFILQFRVERFIYRRVK 70

Query: 217 CQAEKDDLIA---------ELEVAKSLSDETR----KRAE------EENLAKSRFLASMS 257
              +   L+            ++A    +  +    K+ E       EN  K  F+ ++S
Sbjct: 71  KIYDDVTLLDVSDFHNYPITTDMATLTKEIEKFATNKKLEIETLKVRENYRK-EFIGNVS 129

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL  + G+   +    M   +    K+Y+    +  + L+ ++ ++  ++++EAG
Sbjct: 130 HELKTPLFTVQGYILTLLDGAM--NDKAIRKKYLNRAGKGVERLIYIVKDLDMITKLEAG 187

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376
              L      +I++V+    +L+++A +KNI +   ++  +   V AD++ ++QV+ NL+
Sbjct: 188 DLNLDLEEFDIIELVQSVFDLLEMKAAKKNITLAFDMNYANPIMVKADKERIQQVLTNLI 247

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            N++K+    G   ++V         + + DNG GI    I  +   F +   +    E 
Sbjct: 248 VNSIKYGRDNGTTEISVENLIRNKVIVRVTDNGEGIETENIARLFERFYRVDKSRARKEG 307

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL I + I+  H  +  + S+   G E    L
Sbjct: 308 GSGLGLSIVKHIIEAHNEKIYVESEYDVGSEFSFTL 343


>gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 520

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 171/376 (45%), Gaps = 18/376 (4%)

Query: 128 EPGTWTPEYLTIYKSATLLIALS------ISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
                 P +  +   + L    +        AL N +    V L    V VALS      
Sbjct: 131 VRFAARPLHPPLSHLSVLTFVSAPSPPPDSIALGNAVAALTVLLLGVAVAVALSFTKSAR 190

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-------CQAEKDDLIAELEVAKSL 234
             V  +     +       + +   + ++    +          A  + LI     A+  
Sbjct: 191 DDVDYLRERITVMARGQGQSALPTDVIQAEPVPIRSLDQVGLLTAAFNLLITRFAAAERT 250

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                ++A   +  +S FLA +SHELRTPLNAILGF+ V+E E  GPL+ +  +E +  I
Sbjct: 251 YRADLQQASAMDRERSAFLAGLSHELRTPLNAILGFAHVLESEVDGPLSQDA-REALSVI 309

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            +SG+HL  LI++ILDLS +E G+ +LS  A++L  +V + +      A++K +++    
Sbjct: 310 RQSGEHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARDKPLQLRVTG 369

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           D +L +  AD + +RQ++ NL+SNAVKFTA  G V V +    GR   I ++D GPGI  
Sbjct: 370 DHALVA-HADPRRVRQILTNLVSNAVKFTAR-GSVTVNIT-GRGRYAAIVVQDTGPGIPP 426

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            E   V   + Q          G GLGL IA+ ++  HGG   + S+L  G      LP 
Sbjct: 427 EETSAVFEEYRQTGDVRSRRA-GTGLGLSIARRLVLMHGGTIQLESELGRGSTFTITLPM 485

Query: 475 TRVLNFIPEDNHESTQ 490
             V   +      +  
Sbjct: 486 WIVQQPLFAPTPPTPD 501


>gi|270308316|ref|YP_003330374.1| two-component system, OmpR family, sensor kinase [Dehalococcoides
           sp. VS]
 gi|270154208|gb|ACZ62046.1| two-component system, OmpR family, sensor kinase [Dehalococcoides
           sp. VS]
          Length = 470

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 127/285 (44%), Gaps = 12/285 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +   ++        + +           +D+L    E    ++    K  E    ++ R 
Sbjct: 195 IIRPINALNRSARQVARGKFSQRVKVESRDELGELAESFNHMA----KSLETNEQSRQRL 250

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA ++HELRTPL  I G  + I               ++  I      L  LI ++ D+S
Sbjct: 251 LADIAHELRTPLTVIEGTVDGILDGVFEADT-----RHLTTIKEESATLTRLIKDLRDIS 305

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
             E+G+ +L  + + + +I+R     + + A++K++ +   I  + S +  D   + Q+ 
Sbjct: 306 LAESGKLKLEIAQVDIAEIIRRQASQISILAKDKSVSLVTDIPENSSVISGDATRLNQIT 365

Query: 373 LNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
            NLLSNA++ T+ GG++ +++    +    G  +S+ DNG GI   ++P +   F + + 
Sbjct: 366 ANLLSNALRHTSAGGQITLSLKNMLYKDKSGVMVSVADNGEGIPPADLPHIFDRFYRVAT 425

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   +E G GLGL I + +   HGG     S L +G      LP 
Sbjct: 426 SRARSEGGSGLGLAIVKEMTEAHGGYVWAESLLGKGSTFNYWLPR 470


>gi|310826555|ref|YP_003958912.1| hypothetical protein ELI_0941 [Eubacterium limosum KIST612]
 gi|308738289|gb|ADO35949.1| hypothetical protein ELI_0941 [Eubacterium limosum KIST612]
          Length = 447

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  FLA  SHELRTP+  I    EV++    G    E+   ++ + +   + + +++ ++
Sbjct: 211 QREFLADASHELRTPIAVIQTNLEVVK--ASGDETVESQSTWLDNAYDETKRMHHIVEDL 268

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           + L+R ++G      + + +  ++ E        A +K+I I  K+     +V  DEK +
Sbjct: 269 MFLARADSGDVHFEPAPVDIGYLIMEVTERFIPMAAQKSITILSKVPMEELNVMGDEKQL 328

Query: 369 RQVILNLLSNAVKFTAIG-----GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            Q+++ L+ NA+K+T  G       + V           I + D G GI++ E   +   
Sbjct: 329 TQLMVILIDNAIKYTEPGADERNKTIVVQAERIEEG-IEICVTDKGIGISKEEQEKIFQR 387

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +       AE G GLGL IA  I+  H G   + S+   G ++I + P+       P+
Sbjct: 388 FYRVDKVRSRAEGGTGLGLSIAYWIVQKHKGIIRVESEENVGTKMIIVFPSY----EGPK 443

Query: 484 DNHE 487
           + +E
Sbjct: 444 EANE 447


>gi|261218576|ref|ZP_05932857.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261221784|ref|ZP_05936065.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|261315201|ref|ZP_05954398.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261317242|ref|ZP_05956439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261320575|ref|ZP_05959772.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261751910|ref|ZP_05995619.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261754568|ref|ZP_05998277.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|265988281|ref|ZP_06100838.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|265997748|ref|ZP_06110305.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|260920368|gb|EEX87021.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|260923665|gb|EEX90233.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261293265|gb|EEX96761.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261296465|gb|EEX99961.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261304227|gb|EEY07724.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261741663|gb|EEY29589.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261744321|gb|EEY32247.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|262552216|gb|EEZ08206.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|264660478|gb|EEZ30739.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
          Length = 532

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 24  AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 83

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 84  GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 140

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 141 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 200

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 201 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|229172680|ref|ZP_04300238.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3]
 gi|228610812|gb|EEK68076.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3]
          Length = 351

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 156/363 (42%), Gaps = 20/363 (5%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           L      G    L + +         +  Y + ++L A  ++  S      +  + F  +
Sbjct: 4   LKMLKVTGAIIALFSFLTIIWS----IAFYVATSILNAFEVNVSSFVAFLISDMVGFVFI 59

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           V+  +   I+     +  +  ++                 +VKI + +    ++   ++ 
Sbjct: 60  VLIWTLIGILMRPKREAMIWTIIEPIQKITK------GDFSVKIRNEEKYDGEIGVLVKS 113

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
              ++DE           +  F++++SHE+++PL +I GF+  ++   +   + E  K Y
Sbjct: 114 INDMTDELN----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---SEEKRKHY 166

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I      L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+
Sbjct: 167 LTIIETETTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQTVLNSEPLWAEKEIEL 226

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              ++     + AD++ M QV +NL+ N++KFT IGG + + +     +   + I+D+G 
Sbjct: 227 DLDLEK--VHIIADQESMSQVWINLIHNSIKFTPIGGTITIQLKEYE-KVVEVRIRDSGI 283

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+E +   +   F +   +   A  G GLGL I + ++  H G+  + S+  +G E I 
Sbjct: 284 GISEEQKQHIFERFYKADTSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGDGTEFIV 343

Query: 471 ILP 473
            +P
Sbjct: 344 CIP 346


>gi|257791095|ref|YP_003181701.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474992|gb|ACV55312.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 713

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 9/246 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL  MSH++RTPLNAI+G +E+         +++T K+++    +SG++LL++IN++
Sbjct: 332 KSDFLTKMSHDIRTPLNAIMGSNELALRSI---DDSKTLKKHLETSRKSGEYLLSIINDM 388

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKG 367
           LDLSRIE+G+  ++    +L D++   I++    A++K + +              D+  
Sbjct: 389 LDLSRIESGKMTMANRPFALPDLLDSIIVLQSGPAEKKGVVLKESSRHLVHERFLGDDTR 448

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTS 423
           ++Q ++NL+SNAVKFT   G V V+    +          ++KD G G++E  +  +   
Sbjct: 449 IKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVKDTGIGMSESFMKRLFEP 508

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IP 482
           F Q   ++ S + G GLGLPI  ++++  GG   + S    G   +  +P   +     P
Sbjct: 509 FEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGTTFVVEIPLKPLDEPCRP 568

Query: 483 EDNHES 488
            D+ +S
Sbjct: 569 ADDRDS 574


>gi|225852106|ref|YP_002732339.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|256264384|ref|ZP_05466916.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640471|gb|ACO00385.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|263094678|gb|EEZ18457.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408601|gb|ADZ65666.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M28]
 gi|326538322|gb|ADZ86537.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M5-90]
          Length = 609

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDTQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAE-EENLA-KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E     K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K ++   ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|23501466|ref|NP_697593.1| sensor histidine kinase [Brucella suis 1330]
 gi|161618552|ref|YP_001592439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225627084|ref|ZP_03785122.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|254701372|ref|ZP_05163200.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|254703917|ref|ZP_05165745.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|254707707|ref|ZP_05169535.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|254709710|ref|ZP_05171521.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|254712867|ref|ZP_05174678.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|254716779|ref|ZP_05178590.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|256031201|ref|ZP_05444815.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|256159299|ref|ZP_05457094.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|256254609|ref|ZP_05460145.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|256369016|ref|YP_003106524.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260168337|ref|ZP_05755148.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|260566834|ref|ZP_05837304.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261757798|ref|ZP_06001507.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294851947|ref|ZP_06792620.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|23347370|gb|AAN29508.1| sensor histidine kinase [Brucella suis 1330]
 gi|161335363|gb|ABX61668.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225617919|gb|EEH14963.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|255999176|gb|ACU47575.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260156352|gb|EEW91432.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261737782|gb|EEY25778.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294820536|gb|EFG37535.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 609

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1089

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
               L      D  I +L  A+ L+   +++AE     +  FLA++SHE+RTP+N I+G 
Sbjct: 545 EQDELKFLVYVDTDITDLLEARELAIREKRKAENALKTQELFLANVSHEIRTPMNGIIGL 604

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +  +  E +      + +E +  +  S   LL+++N++LD+S+I AG+        SL D
Sbjct: 605 TRQLNDEKLSH----SQQEILDTLDSSANGLLHVVNDLLDVSKIRAGKMTFEYVRFSLRD 660

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++      +  R++EK +    +    L   +  D   + Q++LN++ NA+KFT   G +
Sbjct: 661 LLNTFATSISYRSEEKKLRFNLEFTEKLPNYIIGDPIRLNQILLNIVGNAIKFTIE-GSI 719

Query: 390 HVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + V            +  IKD G GI   +   V  +F Q          G GLGL IA
Sbjct: 720 TLKVYSIEQKNGMERIHFEIKDTGIGIPTHKQDFVFENFMQIEDHRTRTTSGTGLGLGIA 779

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           +S++   GG+  + S+   G  V+  L
Sbjct: 780 KSLVEALGGEIHLFSQEGNGTTVVFEL 806


>gi|254415755|ref|ZP_05029513.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177461|gb|EDX72467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 379

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 141/382 (36%), Gaps = 38/382 (9%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA-----TLLIALSISALSNFMLPYAVFL 165
           L     + +   + +L+     +     I          ++  ++ ++L           
Sbjct: 19  LFLSHLLVMIVGVGSLLIISKVSSPRFFILHLQQLEGKGVIFRVARTSLLQGFQTAWNRG 78

Query: 166 SFFPV----VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           +F+ V      A      +S  ++         T       +   L  S +       E 
Sbjct: 79  TFWSVIVGTTAAGGLSYWLSRRIVKPLTQIEDITQQFAAGKLDKRLPPSEI------PEI 132

Query: 222 DDLIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           + L           +  E R+R           ++ ++HELRTPL  + G+ E +  + M
Sbjct: 133 NQLATSFNQMAVSLEDVEQRRR---------DLVSDLTHELRTPLTVLRGYLEELATQRM 183

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                         + +  + L  LIN++ +LS+ EAG   +    +++  ++   +   
Sbjct: 184 DATPA-----MYQQLAKETRRLERLINDLQELSKAEAGYLPIKVEPVNVRPLLESLVQKF 238

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +  E+   +       L  V AD   + QV++NLL NA++ T   G++ V V      
Sbjct: 239 TDQVLEEGPALQLDCPEKLPRVLADSDRLEQVLMNLLGNAIRHTQT-GKITVRVWVERHG 297

Query: 400 ------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                   +I++ D G GIA  ++P V   F +   +      G G+GL I++ ++   G
Sbjct: 298 IKGIIPRLWIAVTDTGMGIAPEDLPHVFERFWRAEKSRNPHTGGTGIGLAISKRLVELQG 357

Query: 454 GQFLIRSKLREGVEVIAILPNT 475
           G+  + S+L  G      LP  
Sbjct: 358 GEIEVESQLGIGSTFRFYLPLA 379


>gi|149376819|ref|ZP_01894576.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358940|gb|EDM47407.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 783

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 154/340 (45%), Gaps = 21/340 (6%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---------LFK 209
           L  ++ +    + + +  +  +S H+  I+         +    +            L +
Sbjct: 158 LFQSMIVMLGTLGLLVIVRLTLSRHLESIADYAARLNLDALIEPLRLRRKPPKRGDELSE 217

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
               + + + +  +    L      S + R +A   N AK++FLA++SHELR PL ++LG
Sbjct: 218 LEQALNTMRLQLLEDTRSLRQTSIQSQDERDQAVRANHAKNQFLANVSHELRIPLQSVLG 277

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           ++ ++    +    ++  +EY+  +  + + L  +IN++LD+S +EAG+  L +    L 
Sbjct: 278 YANLLSDTPL----DQDQREYVHTLLNASEGLSAIINDLLDISSMEAGKLVLDDIPFDLR 333

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
           D + + + ML  RA+EK + +  +ID +L   +  D   +RQ++LN+ SNA+KFT  G  
Sbjct: 334 DTLNDLVHMLGARAREKGLALELRIDENLPWALKGDPVRLRQILLNMTSNAIKFTDSGHV 393

Query: 389 -VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            + + V         +   ++D G GI   +IP V   + Q     +    G GLGL I 
Sbjct: 394 LISIEVLGRRDNNVRLRMAVEDTGVGINPEDIPLVYEPYVQLGQRFQRQLPGAGLGLTIC 453

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           + ++    G   + SK  EG      L     L   PE  
Sbjct: 454 RQLVQLMDGSLDLESKPGEGSTFWMEL----SLQVAPESA 489


>gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1089

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 10/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +      +++A+  + AKS FLA+MSHE+RTP+NAILG  E+       P   
Sbjct: 681 ITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGMLELASQ---DPALA 737

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               E +     S   LL+LI ++LD+S IE+G+  L+     L  ++          A+
Sbjct: 738 PYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCELAPLLHSVARAFAGMAK 797

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401
           +K +    ++DP L  V  D   +RQ++ NLL NA+KFT   G V +         Q   
Sbjct: 798 QKGLSYRVELDP-LPRVLIDGPRLRQIVFNLLGNAIKFTER-GEVSLQASLVGSAQQPQL 855

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           ++ I+D+G GIA  ++P +   F +          G GLGL IA+ +    GG+  + S+
Sbjct: 856 HLLIRDSGVGIAPDKLPGLFNPFYRAHDPY--QFAGTGLGLNIARMLCQLMGGKIAVSSE 913

Query: 462 LREGVEVIAILPNTRVLNFI 481
           L  G E+   LP T +    
Sbjct: 914 LGAGTELRIRLPLTPLAPEP 933


>gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 762

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             EE +  K+ F++++SHEL+TPL +I G  ++I  ++ G  + E  KE +G   R+ + 
Sbjct: 527 AEEEVDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRGFTDVE--KELLGVCLRNTER 584

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ L+N+ILD+++IE+G+ E + S  S  ++V   +  L+  A+E  + +  ++   L +
Sbjct: 585 LIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSADLPA 644

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ D   + QV+ NL++NAVKF+  G  V ++    S     +S+KD G  I   +   +
Sbjct: 645 IYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQ-SDNFVAVSVKDRGREIQWADRGKL 703

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
              F Q     +    G GLGL I + I+  H G+    S+ +  G      +P
Sbjct: 704 FKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRI-FYSEGIGGGNVFTFTVP 756


>gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1370

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 129/277 (46%), Gaps = 15/277 (5%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             +       + + +     AE+ N AK +F  ++SHE+RTP++ I+   + +        
Sbjct: 806  QVRHRYRARQEILEH--IHAEQINEAKLQFFINISHEIRTPMSLIISPLQKLISTD---K 860

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            + E  K Y   I+R+ + +L L+N+++D+ +I+ G+  L    I ++  +R+     + +
Sbjct: 861  DGERQKNY-HTIYRNAERILRLVNQLMDIRKIDKGQMSLKFQEIDIVGFIRDLYYTFEYQ 919

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            A  K+I +  + +      W D K   +VILN++SNA KFT   G++++ +         
Sbjct: 920  ANAKHITLCFQTEMENLQAWIDPKNFDKVILNIISNAFKFTPENGKINIYLRTGKDMNAP 979

Query: 399  ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    I I+D+G GI   EI  +   F Q   +  ++  G G+GL +++S++  H G
Sbjct: 980  CPLQHYFEIIIEDSGIGIDPAEIGRIFERFYQIRNSHNNSNVGTGIGLHLSRSLIELHHG 1039

Query: 455  QFLIRSKLRE-GVEVIAILPNTRVLNFIPEDNHESTQ 490
                 +   + G   I  LP  +      E ++  T 
Sbjct: 1040 TIEAENNEGKPGSRFIIRLPLGKEHLNAEEIDNNPTD 1076


>gi|255532428|ref|YP_003092800.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345412|gb|ACU04738.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 543

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 136/268 (50%), Gaps = 9/268 (3%)

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            +LE++ +   +    AE+ +  KS FL+ MSHE+RTPLN I+G + +++L         
Sbjct: 145 EQLELSNAALKKAISIAEKASKTKSDFLSVMSHEIRTPLNGIIGIANLLKLNHTM----- 199

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KEYIG++  S  HL+ LIN+ILDL+++E  + EL  + I L  +++      +  A+ 
Sbjct: 200 DQKEYIGNLIFSADHLMQLINDILDLTKMENEKLELIVAEIDLFRLIKNIKNQFKSLAEA 259

Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQ 401
           K I++   ID  +   + AD   + Q++ NL+SNA+KFT  G     + +    ++    
Sbjct: 260 KGIKLKSFIDDDIPQRLIADPVRLSQMLNNLISNAIKFTDRGEVTLLIKLLTVESNRAFL 319

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           + ++KD G GI      +V  SF Q   +      G GLGL I Q +   H  + +++S+
Sbjct: 320 HFAVKDTGMGIPPELQESVFESFKQIQQSAHREHSGTGLGLTITQKLAELHNSRVILKSE 379

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHEST 489
             +G E    L      N   ++   S+
Sbjct: 380 AGKGAEFNFDLSFEIAANQNADEALPSS 407


>gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
 gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
          Length = 814

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  +  E+ +  K+ F+  +S+ELR+PL  I+GF++++     G L++    EY 
Sbjct: 565 ERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSD-KQSEYA 623

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   LL +IN+ILDL+ ++AG  EL    + +   V   +  L+ R  E  I + 
Sbjct: 624 DYIQSSSSALLAIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLR 683

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +   +  + ADEK +RQV+ NL+SNAV+++   G V V+            ++D+G G
Sbjct: 684 THVPGDIGMMVADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSR-EDDKVTFVVQDHGYG 742

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I    +  V   F        S  QG GLGL I +S +  HGG   I+S   +G  V  +
Sbjct: 743 IPAEILTQVFNRF--VGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCV 800

Query: 472 LPNTRVLNFIPEDN 485
            P    L       
Sbjct: 801 FPARPELADQAAAE 814


>gi|83310972|ref|YP_421236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945813|dbj|BAE50677.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1036

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 138/299 (46%), Gaps = 3/299 (1%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
           A     +      +  L        +     T  L +   +    +    + +  LE  +
Sbjct: 585 AALAAEVAERKHAEAQLTAARDQLEARVAERTASLQQEINERQYAEESLRNALTNLERHQ 644

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                 ++ A+  N AKS FL+SMSHELRTPLNAILGF++++E     PL +   +    
Sbjct: 645 QELRLAKEAADSANQAKSDFLSSMSHELRTPLNAILGFAQLLETSRSSPLTD-KQRGQAQ 703

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I + GQHLL LINE+LDL+RIEAG   LS   +    +  E + + +  A  +   +  
Sbjct: 704 CIIKGGQHLLQLINEVLDLARIEAGNLALSLEEVEARPLFDEVMDLTRAYAGGRVAMVDA 763

Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +  + +  +  D    +QV+LNL SNAVK+ A GG V +T+   +       + D GPG
Sbjct: 764 SVPGATASHLRVDYTRFKQVLLNLTSNAVKYGASGGTVTLTMEPGAADSVRFVVTDRGPG 823

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           IA  +   +   F +   A  +  +G G+GL I++ ++   GG+    +    G     
Sbjct: 824 IAPEKQALLFRPFNRL-GAEATEIEGTGIGLTISKQLVEAMGGRIGFETATGRGTTFWV 881


>gi|254412494|ref|ZP_05026268.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180804|gb|EDX75794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 411

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           +FLA+ SHELRTP+N I+GF++++ L+  G L     K  +  I ++G HLL+L++E+LD
Sbjct: 173 QFLATTSHELRTPMNVIIGFAQMLLLQRHGSLTLSQLK-MVQCILKNGNHLLSLLSEVLD 231

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            ++IEAG  EL     ++  +V   +  ++  A +K +++  KI    +SV  D   + +
Sbjct: 232 FAQIEAGALELKAEEFNIDQVVNSTVNDVRPLALQKGLDLSIKIQLKNTSVINDRSRLHK 291

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V+ +LL NAVKFT   G + V V     +   I ++D G G+++ E+  +  +F Q    
Sbjct: 292 VLKHLLMNAVKFT-KSGSIWVNVYEVESQRLIIDVEDTGIGLSQAELDYIFDAFRQVDQT 350

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I     G GLGL + +S++    G+  + S++ EG      LP 
Sbjct: 351 ITRQYPGTGLGLAMTKSLVQLMQGKITVESQVGEGSIFRVELPR 394


>gi|150388921|ref|YP_001318970.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948783|gb|ABR47311.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 144/329 (43%), Gaps = 7/329 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           + ++ I  +  F +          +  ++   AI+S+ V  +         L     IT 
Sbjct: 146 IGSVEIGYVGPFTVSERDVEFTRGMNKSIMYAAIISILVALVLGIYSAKGFLKPILLITE 205

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                    L  + E D+ + EL+      +      EE+ + + R  + +SHELRTPL 
Sbjct: 206 GANNLRWGKLDTKVEIDNQVIELQQLSQSINHLATSLEEQKILRKRLTSDISHELRTPLT 265

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +    E I      P      +E +         L+ L+ E+ +L+ IE  + +L    
Sbjct: 266 ILQSHIEAIRDGIWEPT-----EEKLSICKNEVDRLIKLVGELQNLTDIEKHQIDLQLEN 320

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L  ++ E       + Q+K I   ++I   +  +  D   M+Q+I+NLLSNA+KFT  
Sbjct: 321 CQLSKVIDEVFDGFAYQFQQKQIMFKREIQGDI-YMNIDPDKMKQIIINLLSNALKFTDP 379

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            G V V++   + R   ++++D G GI   +IP V   F +G  +   +  G G+GL I 
Sbjct: 380 EGSVSVSLKEEADR-IRLTVEDTGIGIESEDIPYVFERFYRGDQSRNRSTGGAGIGLTIT 438

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +S++  H G   + S+ ++G +   ILP 
Sbjct: 439 RSLVEAHQGTIFVESEKKKGTKFTVILPR 467


>gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 825

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 157/414 (37%), Gaps = 17/414 (4%)

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124
            F++  I  +  + TLA+ A  +    +       +      R   +V      +     
Sbjct: 177 LFSRLAIVVLALMGTLALTALVILRLFRRGQRLSMLQAQEAARTEAMVTSSLDAILMADA 236

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
                            S    I LS  AL                        I+    
Sbjct: 237 AGRITAINGAAEEIFGYSEEEAIGLSFDALVLNSPDN---------SGPNKIDDILRESD 287

Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244
             I +             ++  L KSN   +     +D  I+    A+      R  A  
Sbjct: 288 GRIEMTAQRKNGEILPVEVSLTLSKSNGNQVLVSYVRD--ISRRLQAEEELRRARDDALA 345

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              AK R L  MSHE+RTPL  ILG  +V+E   +GP  +   + Y+  +  SG+ LL+ 
Sbjct: 346 GEQAKDRLLTVMSHEMRTPLTGILGSLDVLED--LGPTAD--QQRYMQAMRVSGELLLHH 401

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWA 363
           +N++L LSR+EAG          L ++V       Q  A+  N E+         S V  
Sbjct: 402 VNDVLQLSRLEAGADPDPPHPFDLDELVSGIGESQQAIARRNNNELTVFCSLGGSSGVEG 461

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
             + ++QV+LNL+ NA+KFT   G V V V  T G     S+ D G GIA  ++  +   
Sbjct: 462 RCRYVQQVLLNLIGNALKFTHD-GAVSVDVMRTEGDLVEFSVADTGKGIAAEDLDRIFDD 520

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           F     + K   +G GLGL I++ ++   GG+    S+  EG      +P   V
Sbjct: 521 FTMLDPSYKRGSEGTGLGLAISRRLVRLMGGEITCESEPDEGSLFTFTIPLPPV 574


>gi|255082071|ref|XP_002508254.1| predicted protein [Micromonas sp. RCC299]
 gi|226523530|gb|ACO69512.1| predicted protein [Micromonas sp. RCC299]
          Length = 430

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 8/246 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            +K    E ++++E   +AKS FLA+MSHE+RTPLNAI+  SE++      P      +E
Sbjct: 15  KSKLQMKEAKEKSEAMVIAKSSFLANMSHEIRTPLNAIIAGSELLS---YIPDLTAEQRE 71

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               + R+   LL L++++LD S+IEA +  L+    S+   +   + M  ++A  K + 
Sbjct: 72  LTDMVIRTSHTLLALVSDVLDFSKIEAEKLALNVKPFSIESCIDLSLEMQSIKANNKRLV 131

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--YISIK 406
           +   I  ++   +  D+  +RQV+ NL+SNAVKFT   G V + +  +SG        + 
Sbjct: 132 LNYCIASNVPQRLLGDDMRIRQVVTNLISNAVKFTPK-GSVELKIRPSSGDSVTLLFEVI 190

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREG 465
           D G GI   +   + T+F Q + +   ++QG GLGL I   ++    G    + S +  G
Sbjct: 191 DTGVGIPPDDQSELFTAFHQVNSSRTRSQQGTGLGLAICLKLVRLMQGDMSLVSSGVGCG 250

Query: 466 VEVIAI 471
                 
Sbjct: 251 SRFAFT 256


>gi|298346495|ref|YP_003719182.1| hypothetical protein HMPREF0573_11369 [Mobiluncus curtisii ATCC
           43063]
 gi|298236556|gb|ADI67688.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
          Length = 517

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 6/241 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +   +  E    ++  F A++SHEL+TPL +I G++E+I    +   +      +  
Sbjct: 280 QRLEHQNRDKEAAARSRREFSANVSHELKTPLTSISGYAEIIRNGLVRDEDIPG---FAE 336

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IH+    LL+LI +I++LSR++ G        + L  + R  +  LQ RA   ++++  
Sbjct: 337 RIHQESSRLLDLIGDIMELSRLDEGGLPAEAGEVDLFGLCRTVVERLQPRAAAFDVKLTL 396

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
               S +++   E  + +++ NL+ NA+K+   GG V+V  G   GR Q + + D G GI
Sbjct: 397 --SGSHTTLTGVEPLLGEMVYNLVDNAIKYNREGGEVNVWAGTHLGRPQLV-VTDTGIGI 453

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   V   F +   +      G GLGL I +   + H  +  + S   +G  +    
Sbjct: 454 PLEDQERVFERFYRVDKSHSRQTGGTGLGLSIVKHAASLHSAEITVNSTPGQGTRIEVAF 513

Query: 473 P 473
           P
Sbjct: 514 P 514


>gi|330897241|gb|EGH28660.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 783

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 123/285 (43%), Gaps = 10/285 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKASNLRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGMLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHRDASSGENRVRIEVRDTGIGIAQDAQTRIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL +  ++     G   I+S+   G +  A LP    +  +
Sbjct: 480 GTGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPLPVNVPAV 524


>gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1192

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/401 (23%), Positives = 164/401 (40%), Gaps = 19/401 (4%)

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           + L      L L K + +               ++     G    L+T+      T E  
Sbjct: 329 MILDGELLFLGLVKDLSDVKRAQVAAQR--TESILLATLEGSKDGLITI----DITGEIQ 382

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST---QAIMSMHVLDISLAGMLA 194
            +  SA L+     SAL    +   +F               +   +      +      
Sbjct: 383 EVNDSACLMFQAHSSALVGERMETCLFQGGARATFREILEEYRLTGAGKAFKNATEIFAT 442

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
                   I   L    +            I+     ++     +++AE+ + AKSRFLA
Sbjct: 443 RFDGKLLPIELTLIPVQLGEEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLA 502

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+R+PLNA+LG  +++    +    N+  + Y      +G  LL+ IN+ILD S+I
Sbjct: 503 TMSHEIRSPLNAVLGSVDLLLDSRL----NKEQRIYANTAKEAGTALLSTINDILDFSKI 558

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+  L +S+ S   +V + + +L  +AQ+K I +   ++ ++   +  D + +RQV+ 
Sbjct: 559 EAGQMLLEKSSFSAAKLVTQVLQILSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQ 618

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           NL+ NA+KF+  GG + V +     +        ++ D G GI+E    T+   F Q   
Sbjct: 619 NLVDNAIKFS-SGGCIAVEMWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHD 677

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
              +   G GLGL I   ++    G   +RS+   G     
Sbjct: 678 EHNTNYSGTGLGLAICAELITRMEGSIAVRSEQGRGSCFSF 718


>gi|159897796|ref|YP_001544043.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890835|gb|ABX03915.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 542

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 24/335 (7%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L    +    P+   L         +      G      + F Y T  L  + ++ +   
Sbjct: 212 LLQETYQQQQPIQTTLKLAEADHNVITFPLRVGGAMIGSALFDY-TEALPSAQIEGMMLL 270

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +           +   E   R +E +  KS F++  SHELRTPL  +LG+  VI+   
Sbjct: 271 LNQAAAALNNAQLFTRVQEANSRLQELDRLKSEFISITSHELRTPLAVVLGYGIVIQER- 329

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
               +    + Y+  +  S Q +  +I+++  L R++  + EL    I L +++ E I  
Sbjct: 330 ----SEPPIRTYLDRLVESAQRMKEIIDDMTHLRRLDTRQTELQLEPIVLDELLYEVIDQ 385

Query: 339 LQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396
           +   AQ+K+  +     P  L +++AD   +  V+++LLSNA+KFT   G + V      
Sbjct: 386 MHGLAQKKSQTLSLATPPDALCTLYADRAKIALVLMSLLSNAMKFTPAEGMITVRAWCET 445

Query: 397 ----------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                            G   ++S+ D+G GI E  +  +   F Q + ++     G G+
Sbjct: 446 VQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPESHLQRIFERFYQVAQSLTREYGGTGV 505

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GL + Q ++A H G   ++S+   G      LP  
Sbjct: 506 GLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQR 540


>gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 762

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             EE +  K+ F++++SHEL+TPL +I G  ++I  ++ G  + E  KE +G   R+ + 
Sbjct: 527 AEEEVDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRGFTDVE--KELLGVCLRNTER 584

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ L+N+ILD+++IE+G+ E + S  S  ++V   +  L+  A+E  + +  ++   L +
Sbjct: 585 LIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSADLPA 644

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           ++ D   + QV+ NL++NAVKF+  G  V ++    S     +S+KD G  I   +   +
Sbjct: 645 IYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQ-SDNFVAVSVKDRGREIQWADRGKL 703

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473
              F Q     +    G GLGL I + I+  H G+    S+ +  G      +P
Sbjct: 704 FKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRI-FYSEGIGGGNVFTFTVP 756


>gi|154684869|ref|YP_001420030.1| YclK [Bacillus amyloliquefaciens FZB42]
 gi|126363009|emb|CAM35824.1| hypothetical protein YclK [Bacillus amyloliquefaciens FZB42]
 gi|154350720|gb|ABS72799.1| YclK [Bacillus amyloliquefaciens FZB42]
          Length = 476

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 124/263 (47%), Gaps = 7/263 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L ++         ++R++ +     + +F+A +SHELRTPL  I G  E +   T+
Sbjct: 220 EIGMLASDFNTMAKNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTI 279

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + E        I    + +L L+ E LD  +I + + +L + ++ LI++       L
Sbjct: 280 PEKDKEK---CFSLISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHL 336

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +A+EK  ++  +++  +  V+AD   + Q+++N+  N+++FT   G + +  G+   +
Sbjct: 337 NQQAEEKQNQLRIQVEDGV-KVFADYDRLIQILVNITKNSIQFTQK-GDITLR-GYEGYK 393

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I I+D G GI++ EI  +   F +  ++   +A    GLGL I + ++  H G   I
Sbjct: 394 ETVIEIEDTGIGISKEEIEHIWERFYKADVSRTNTAYGEYGLGLSIVRQLVEMHKGTIDI 453

Query: 459 RSKLREGVEVIAILPNTRVLNFI 481
            S+  +G      LP        
Sbjct: 454 DSEKGKGTTFTIRLPLNTKHESS 476


>gi|15901088|ref|NP_345692.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
 gi|111657844|ref|ZP_01408559.1| hypothetical protein SpneT_02000967 [Streptococcus pneumoniae
           TIGR4]
 gi|5830524|emb|CAB54569.1| histidine kinase [Streptococcus pneumoniae]
 gi|14972707|gb|AAK75332.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
          Length = 449

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|115523391|ref|YP_780302.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517338|gb|ABJ05322.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 878

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 181/466 (38%), Gaps = 36/466 (7%)

Query: 40  LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-----LGKKVM 94
               S    + +   + +  A+    F  N      + + L +YA  L+      G   M
Sbjct: 165 AFALSTAPHAGLAYTWTMASASAIALFLCNGNAYAITAVFLLLYAIFLARNLVTHGTLFM 224

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
           ++     E+        +  + +       +     T     L       + ++    AL
Sbjct: 225 DNLRSKLELE---RKTEIISLLLKDFQANASDWLWQTDVDGRLVSIPERFVEVSQLPLAL 281

Query: 155 SNFMLPYAVFLSFFP---VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
                   V     P     VA  T  +     L      ++         +T       
Sbjct: 282 LRGAAIADVLAMLSPDDRAAVATVTALMAKREPLHDVAVHVVVAGKPRLWSMTAKPVLDP 341

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
               +        + E   A         +AE EN AKS FLA MSHE+RTP+N +LG +
Sbjct: 342 DGRFAGYRGVGRDVTERWRA--------DQAEAENRAKSEFLAMMSHEIRTPMNGVLGLA 393

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            V+    +    +      +  I  SG +L  ++N+ILDLS++EAGR++      S   +
Sbjct: 394 NVLLETKL----DPEQHHAVATIRDSGDNLQRILNDILDLSKLEAGRFQFEMVDFSPHTL 449

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +     ++   A+ K + +   +   L   +  D   +RQV+LNL +NAVKFT   GR+ 
Sbjct: 450 IGAVSAVIGPMAKNKGLSVEIDVAKDLPETLTGDAARIRQVLLNLAANAVKFTER-GRIA 508

Query: 391 VTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           ++V  +  +   +S++    D G GIA+  + ++ + F Q  + I     G GLGL I++
Sbjct: 509 ISVLCSDRQDDSVSVEWRVVDTGIGIADDRVGSLFSDFAQADVTINRRFGGTGLGLAISR 568

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
            I+   GG+  + S   +G      L        +P  + + + ++
Sbjct: 569 RIVEQMGGEIGVSSVHGDGSTFYFRL-------RLPISDRKISDHR 607



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 13/211 (6%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG------------TWFTQNPIF 72
           L  P++    RE ++         + I  +     A +              W + + IF
Sbjct: 26  LSGPAEPSSSREELSERDLRRINAAQIASVTRQTPATMAVNVANAVIVVTTFWNSGSNIF 85

Query: 73  PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132
            +  L+ + + A            +            + +    + L W L  +V   + 
Sbjct: 86  LVCWLVAVVLVALLAVGAWVRKRRNPPKEASIRGLRRMTLQAFMLALVWGLAPIVLFPSA 145

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
            P Y  +  +  +   +S  A +    P+A     + +  A +    +         A  
Sbjct: 146 PPTYQLV-IACLMTGMMSGGAFALSTAPHAGLAYTWTMASASAIALFLCNGNAYAITAVF 204

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           L     F            +  L  + E + 
Sbjct: 205 LLLYAIFLARNLVTHGTLFMDNLRSKLELER 235


>gi|15837455|ref|NP_298143.1| two-component system, sensor protein [Xylella fastidiosa 9a5c]
 gi|9105761|gb|AAF83663.1|AE003925_3 two-component system, sensor protein [Xylella fastidiosa 9a5c]
          Length = 499

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 5/255 (1%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E+ ++    E         R  AE     K  FL+++SHELRTPL  ILG+SE++    
Sbjct: 221 TERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI 280

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                       +  I  S +    LI+++LDLS +  G+ +L    + L++ +RE I +
Sbjct: 281 DEQHPCYKG---LSVIASSAKVQKRLISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGL 337

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +     K   +  +       V  D   +RQ+  NLLSNA+KFT   G + V +    G
Sbjct: 338 YEPVVDSKGQRLLLRASEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDA-DG 396

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               +S+ D+G GIA   +P + + F Q          G+GLGL I QS++  HGG    
Sbjct: 397 DSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGA 456

Query: 459 RSK-LREGVEVIAIL 472
            S  + +G      L
Sbjct: 457 TSPGIGKGAMFTVSL 471


>gi|125974108|ref|YP_001038018.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714333|gb|ABN52825.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 556

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +     +  F A++SHEL+TPL +ILG++E+++   + P   E   E+   I+   +HL+
Sbjct: 329 QSAEKMRREFAANVSHELKTPLTSILGYAELMKSGMVKP---EDISEFSDRIYNEARHLI 385

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +LI +++ +SR++    +L    I L+++ +E +  L   AQ+K I++        + ++
Sbjct: 386 DLIEDVIRISRLDEKNVQLPFEEIDLLELAKETVGRLSSLAQQKRIKLSV--GGDNAIIF 443

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
              + + ++I NL  NA+K+    G+V V V   S +   +++ DNG GI       V  
Sbjct: 444 GVRQILEEMIYNLCDNAIKYNYENGKVDVNVKTFSDQ-VVLTVADNGFGIPREHQSRVFE 502

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   +      G GLGL I +     H  +  + SK  +G  +  I    +
Sbjct: 503 RFYRIDKSHSRETGGTGLGLSIVKHSAEFHNAKIRLMSKPGKGTTITVIFSREQ 556


>gi|182434881|ref|YP_001822600.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463397|dbj|BAG17917.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 682

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 10/321 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
               LP           +A +   ++++ V     AG                 +   + 
Sbjct: 363 GGATLPGFDLSPANTARIAGAAALVLALTVGASVFAGTRLVRPLHALTGAAQRMRDGERP 422

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
            S     DD +  L  A +     R R EE+  A    ++ ++HELRTPL+ I G+ E  
Sbjct: 423 ESVPVSGDDEVGRLAAAFNDMSAHRARLEEQRKA---MVSDVAHELRTPLSNIRGWLEAA 479

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +     P        ++  +      L ++I+++ DL+  +AG   L    +   +++ +
Sbjct: 480 QDGLADPDPA-----FVSSLLEEAVLLQHIIDDLQDLAAADAGVLRLHPEPVEARELLGQ 534

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV- 393
                Q RA+   + +         ++ AD   +RQ + NL+SNAV+ T  GGRV +   
Sbjct: 535 VAAAHQARAENAGVTLTVAGAAPGPALRADPVRLRQAVGNLVSNAVRHTPEGGRVTLRAY 594

Query: 394 -GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                     + + D G GI   ++P V   F +   +      G GLGL I + ++  H
Sbjct: 595 ACEEEAGTVLVEVADTGSGIPAEDLPHVFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAH 654

Query: 453 GGQFLIRSKLREGVEVIAILP 473
           GG     S   EG   +  LP
Sbjct: 655 GGTVDAASVAGEGSTFVLRLP 675


>gi|148559005|ref|YP_001258574.1| sensor histidine kinase [Brucella ovis ATCC 25840]
 gi|148370262|gb|ABQ60241.1| sensor histidine kinase [Brucella ovis ATCC 25840]
          Length = 609

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 188/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +    +  
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLHSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 771

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|332520077|ref|ZP_08396541.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044636|gb|EGI80830.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 348

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 134/328 (40%), Gaps = 9/328 (2%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           S+     + +     L F  +  + +   I       I                     K
Sbjct: 26  SVFLFIFYSIKPLALLVFIILCFSTAFAVIQYRAQNFIYKRVKQIYDDLTLLESATFRKK 85

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
                +S   E+ D  A+ +  +  +   R+        +  FL ++SHEL+TPL  + G
Sbjct: 86  GITTDMSTLKEEIDRYAKDKKVEIETLNIREE------YRKEFLGNVSHELKTPLFTVQG 139

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + E +        + +   +Y+   ++  + L+ ++ ++  ++++E G   L      ++
Sbjct: 140 YLETLIDGA--AKDKKIRDKYLDRANKGVERLIYIVRDLDMITKLEVGDIRLDYETFDIV 197

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            ++     + +++A +KNI +       S   V AD + ++QV+ NL+ N++K+    G 
Sbjct: 198 ALIESVFELFEMKAAKKNITLMFDRTYDSEIYVHADREKIQQVLTNLVVNSIKYGRKKGT 257

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
             V++         + + DNG GI+E  IP +   F +   +    E G GLGL I + I
Sbjct: 258 TEVSIENLIKNKVIVRVTDNGEGISEDHIPRLFERFYRVDKSGSRKEGGSGLGLSIVKHI 317

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  H  +  I S+L  G E    L   +
Sbjct: 318 IEGHDEKIYIESELDVGSEFSFTLEKAK 345


>gi|310641769|ref|YP_003946527.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246719|gb|ADO56286.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 156/380 (41%), Gaps = 28/380 (7%)

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
           + G + +   ++LV  +   L WT    +    ++    T ++    LI  ++       
Sbjct: 4   EPGFLRILARFMLVLLVLY-LSWTAAYFITAVIYSRLSWTPHELFVYLINATLGFF---- 58

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILS 216
                F     + V    Q        ++  A    +   F   + ++      N     
Sbjct: 59  -----FFGIISMTVRRFIQPREQHFFTEMIDALKRISEGDFHINLGWNFGTRNGNHDRTH 113

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              +  D I ++     + +E R+           F++++SHE+ +PL +I+GF++ ++ 
Sbjct: 114 PYIQLVDSINDMAANLKVMEELREA----------FISNVSHEIGSPLTSIIGFAKALKD 163

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           + +   + E    Y+  I      L  L + ++ L+ +++ R+    S+  L   +   I
Sbjct: 164 DNL---DREQRDRYLTIIETECIRLSKLSDNLMKLAVLDSERHPFHPSSYRLNKQLISLI 220

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
           +  + + + K I++          V ADE  M QV +NLL NA+KFT  GG + V++  +
Sbjct: 221 LACEPQWEAKQIDMIVDTHN--VQVNADEDLMGQVWVNLLHNAIKFTPQGGSISVSLS-S 277

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +G    + I D GPGI E +   +   F +   +      G GLGL IA  I   H G  
Sbjct: 278 NGNQAVVCITDTGPGINEQDQQRIFERFYKADKSRTRTAGGSGLGLSIAHKITEMHSGSI 337

Query: 457 LIRSKLREGVEVIAILPNTR 476
            + SK+ EG     +LP   
Sbjct: 338 SVSSKVGEGTAFTVLLPLQE 357


>gi|306842152|ref|ZP_07474821.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
 gi|306287739|gb|EFM59170.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
          Length = 522

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/473 (21%), Positives = 197/473 (41%), Gaps = 23/473 (4%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                +    P ++ F      + +        IL   V+      +         +  L
Sbjct: 31  AALWLMAAGLPLEIWFACRKPGITIAGSLAAMAILAFLVVKTGGAIS-GGSLISGAILLL 89

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
              ++    +++ +K     +   +V +    +  G    G+  ++             +
Sbjct: 90  YAASLVLRGVAVARKPAQISVAAPQVAIAAGDMQFGLDIEGIVSSVDGETAKLLGVQPKM 149

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
               +    + ++   +    L   +        V +  ++I + + +  +     A + 
Sbjct: 150 LEGTALIDRVHVA-DRVQYLSLLADLRAGMATRKVDVRLRSIENGNPVFRAYRFEGAGSD 208

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              T I   L                L+ E+ + K+  +  R         K R LA++S
Sbjct: 209 RAITLIGRSLEGEQ-----------KLLDEIAMLKAELESERI-------GKGRLLATVS 250

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 251 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 310

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 311 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 370

Query: 378 NAVKFTAIGGRVHV---TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +    V    G     S+ D G GI   ++  + T F +   +   A
Sbjct: 371 NAVKFTQSGGCVTIDAARVMADGGPMLEFSVSDTGIGIDLEDLQRIGTPFVRAGNSYTQA 430

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 431 QEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 483


>gi|197335745|ref|YP_002156440.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11]
 gi|197317235|gb|ACH66682.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11]
          Length = 958

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 214 ILSCQAEKDDLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            L       +L +  E         D+ R  AE+ N AKS FLA+MSHE+RTPLN +LG 
Sbjct: 418 ELQIAQRTQELKSSNERLNVEIINHDKARDLAEQANRAKSAFLATMSHEIRTPLNGVLGT 477

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E++     G       K+Y+  I+RSG++LL+L+N+ILD S+IEAG   + +   S+  
Sbjct: 478 GELLR----GSGLTAQQKQYVDIINRSGENLLDLLNDILDYSKIEAGHLSIRKKNFSVQS 533

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +   +   RAQ+K I +           W  D   +RQV+ N + NA+KFT   G V
Sbjct: 534 MITDVHHLFSSRAQQKGITLSVNAPVDTPEWWIGDCSRIRQVLNNFVGNAIKFTHT-GSV 592

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +           + D G GIAE EI T+   F Q    +K    G GLGL I+Q ++
Sbjct: 593 TIQLSLILDTTLLFEVIDTGVGIAEHEIDTLFDVFTQAEEGMK-VSGGTGLGLAISQRLI 651

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
               G+  + S   +G      L            + ++T
Sbjct: 652 EAMDGEIGVESIEGQGSTFWFSLELDEGQPVESLSDDKTT 691


>gi|124022255|ref|YP_001016562.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962541|gb|ABM77297.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 685

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 158/464 (34%), Gaps = 46/464 (9%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLV 112
            L  A +    T      +W L+ L      L++ + V      +  +          L 
Sbjct: 202 ALASAALTRQVTIAVFISIWVLVILGAVFNALTITQPVKELLRGVRAIASGNFEARIALP 261

Query: 113 GQIAIG-LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
               +G L      +               +A  +   S+ A           +    + 
Sbjct: 262 MGGELGELLNGFNAMASQLEAYDAANIEELTAAQVKQQSLIATMADGALLLDEVGQIVLA 321

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              + +              +          +   L      I      +  L       
Sbjct: 322 NPTARRLFRWEGRNLEGQELLNELPEIIANELHDPLQSLLRNIGESNDLRCSLEEPTRTL 381

Query: 232 KSLSDETRK-----------------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +    R                  R  E N A+SRF++++SHELRTPL  I  + E +
Sbjct: 382 RIVLQSVRDQSGETLKGIAITVQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETL 441

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                  L+ E  KE++G  +     L  L+N++LDLSR+E+GR  +    + L   + +
Sbjct: 442 HD-LGDQLSEEEKKEFLGVANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQ 499

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +   +L A +K I I    D  L ++  +   + QV+ NL+ N +KF+  GG + V   
Sbjct: 500 TLRNYRLNADDKQIHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAY 559

Query: 395 WTSGR----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                         + + D G GI + +   +   F +   A+ 
Sbjct: 560 TWPDSCKMSPIESSKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVH 619

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   G GLGL I + I+  HGGQ  + S++  G      LP  +
Sbjct: 620 TEA-GTGLGLSIVRGIIEKHGGQIRMASEVDLGTTFWFDLPLEQ 662


>gi|72382751|ref|YP_292106.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL2A]
 gi|72002601|gb|AAZ58403.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. NATL2A]
          Length = 689

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 25/254 (9%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N A+ RF++++SHELRTPL  I  + E +       L  +  KE++G  +     L  
Sbjct: 413 QLNAAQKRFISNVSHELRTPLFNIKSYVETLYD-LGEQLTKDEQKEFLGVANSETDRLTR 471

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR  +   A+S+ + + + +   +L A+EKN+++   ++ +L+ V  
Sbjct: 472 LVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAEEKNVKLILNVENNLTFVLG 530

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------------RGQ 401
           +   + QV  NL+ NA+KF+  GG +++                                
Sbjct: 531 NWDMLLQVFDNLVGNALKFSQEGGTINLKAYTWPDICVASPVDLDNKAPHCEILSPMPKI 590

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D G GI+E +   +   F +   ++ +   G GLGL I + I+  HG +  + S+
Sbjct: 591 RVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEV-GTGLGLSIVKGIVDKHGSEIRMASE 649

Query: 462 LREGVEVIAILPNT 475
              G      LP  
Sbjct: 650 PNTGTTFWFELPLE 663


>gi|312126308|ref|YP_003991182.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776327|gb|ADQ05813.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 566

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  + +F+A +SHELRTP+  I  +SE +        +    +E++G I +    +  L
Sbjct: 339 LDQMRKQFVADVSHELRTPITTIKTYSETLLD----VDDEAVKREFLGVIIKECDRMTRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++L LSR+++G   L    +++ ++VR     +++ A++KN ++    + ++  + AD
Sbjct: 395 ISDLLYLSRLDSGENILKIEEVNVSELVRFVCEKMRIHAKKKNQKLLCSAEENVV-IEAD 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NL++NAV +   GG++ V +         I++KDNGPGI E ++P +   F
Sbjct: 454 RDRLEQVLINLINNAVVYVQEGGQIEVGLEKDEEH-VKITVKDNGPGIPEDDLPRIFERF 512

Query: 425 GQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A                    IA  I+  HGG+ L+ SK   G     +LP  R
Sbjct: 513 YRVDKARSRSLGGSGLGLS-------IADEIVKAHGGRILVESKEGVGTTFTVVLPVKR 564


>gi|163842583|ref|YP_001626987.1| phosphate regulon sensor protein phoR [Brucella suis ATCC 23445]
 gi|163673306|gb|ABY37417.1| Phosphate regulon sensor protein phoR [Brucella suis ATCC 23445]
          Length = 438

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1105

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 23/319 (7%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD----------DLIAELEVAK 232
            +L+ ++AG    A +F   +     +        + + D            I      +
Sbjct: 318 RLLNDAVAGRGVYAPTFRIVLPDGRIRHIQAAALVEFDDDNRPYRVTGINRDITIQHDIE 377

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           +   E+++ AE  + AK+ FL++MSHE+RTP+NA+LG + ++E   +         + + 
Sbjct: 378 TALRESKENAEAASRAKANFLSNMSHEIRTPMNAVLGLAYLLEKHGL----PAEALDLVH 433

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  +G+ L  +IN+ILD S+IEAG  E+ +++  L D++     ++      ++IE+  
Sbjct: 434 KIRVAGRSLQAIINDILDFSKIEAGNLEIEQASFRLADVLDNLSTIMSASVGNRDIELII 493

Query: 353 KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407
              P  +  +  D   + QV++NL SNA+KFT   G V V++              +++D
Sbjct: 494 APPPQDIDYLRGDALRLEQVLINLTSNAIKFT-EHGHVKVSIQPLEASPSQVRLRFAVED 552

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI + +   +   F Q   +      G GLGL I+Q ++A  GG+  + S+  +G  
Sbjct: 553 TGIGIPKPKQRELFRPFTQADASTTRRFGGTGLGLAISQRLVALMGGEIGLYSEPGQGSA 612

Query: 468 VIAIL--PNTRVLN-FIPE 483
               L  P  + +    PE
Sbjct: 613 FWFTLRFPREQGIRLSSPE 631


>gi|315125755|ref|YP_004067758.1| two-component sensor histidine kinase and response regulator hybrid
           [Pseudoalteromonas sp. SM9913]
 gi|315014269|gb|ADT67607.1| two-component sensor histidine kinase and response regulator hybrid
           [Pseudoalteromonas sp. SM9913]
          Length = 653

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 21/293 (7%)

Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
           +   +L       L           +S    L+ +  +D+ +             R +AE
Sbjct: 94  LDSAALDAGAVDYLVKSEMSGSRFARSIRYALARRDVEDERVE------------RLKAE 141

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            EN +K RFLA +SHELRTPL++ILG++E++ L              +G I+R+G+HLL+
Sbjct: 142 AENRSKDRFLAHLSHELRTPLSSILGYTELLMLSDFSKQAENE----LGVIYRNGKHLLS 197

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           L+N++LDLS+I   + ELS   ++L  ++ +   ++++ A +K + +  +    L   + 
Sbjct: 198 LLNDVLDLSKIAVDKLELSLGDVNLDSLMADVFTLMRVSALDKGLSLKFESLEPLPLVIR 257

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPT 419
            D   +RQ+++NL++NA+KFT   G + V             + SIKD+G GIA  +   
Sbjct: 258 VDATRVRQILINLINNAIKFTEQ-GEIIVNAWTETVAEREMLFFSIKDSGLGIAPEKQAL 316

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F Q +     +  G GLGL I   +++   G   + S + EG      L
Sbjct: 317 IFKPFEQIADVESRSVGGAGLGLAICSELLSRMQGTISLDSYVGEGSTFTISL 369


>gi|215919045|ref|NP_819809.2| two component system histidine kinase [Coxiella burnetii RSA 493]
 gi|206583930|gb|AAO90323.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 831

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 269 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTS 328

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 329 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRT 388

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 389 IELLQPVAHQKKLTLACEVDEGIPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 447

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 448 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 507

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 508 VKRYVDAMGGEITVDSEVGKGTCFTVIIP 536


>gi|183984909|ref|YP_001853200.1| two-component system response phosphate sensor kinase, PhoR
           [Mycobacterium marinum M]
 gi|183178235|gb|ACC43345.1| two-component system response phosphate sensor kinase, PhoR
           [Mycobacterium marinum M]
          Length = 481

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 142/325 (43%), Gaps = 12/325 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL---DISLAGMLATALSFFTYITYHLFK 209
            + + +       +   VVV L+  A++   +    ++        +      +     +
Sbjct: 153 TVRSLVWLQIGIGAGVLVVVGLAGFAVVQRSLRPLSEVEQTAAAIASGQLDRRVPERDPR 212

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + V  LS     + ++++++VA + S+++ ++A        RF+   SHELRTPL  I G
Sbjct: 213 TEVGQLSLAM--NGMLSQIQVALAASEDSAEKARSSEERMRRFITDASHELRTPLTTIRG 270

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F+E+        +        +  I      +  L++++L L+R++  R  L  + + L+
Sbjct: 271 FAELYRQGAARDVAM-----LLSRIESEASRMGLLVDDLLTLARLDVQR-PLERNRVDLL 324

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +  + +   +   +++ I +     P    V  DE  +RQV+ NL+ NA++ T     V
Sbjct: 325 VLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQHTPDSADV 384

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V VG T+G+   + + D GPG+   +   V   F +   +   A  G GLGL I  S++
Sbjct: 385 TVRVG-TAGQNAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLSIVHSLV 443

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG   + +   EG      LP 
Sbjct: 444 KAHGGDVTLTTAPGEGCCFRVTLPR 468


>gi|304389766|ref|ZP_07371725.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304326942|gb|EFL94181.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 517

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 6/241 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +   +  E    ++  F A++SHEL+TPL +I G++E+I    +   +      +  
Sbjct: 280 QRLEHQNRDKEAAARSRREFSANVSHELKTPLTSISGYAEIIRNGLVRDEDIPG---FAE 336

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            IH+    LL+LI +I++LSR++ G        + L  + R  +  LQ RA   ++++  
Sbjct: 337 RIHQESSRLLDLIGDIMELSRLDEGGLPAEAGEVDLFGLCRTVVERLQARAAAFDVKLTL 396

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
               S +++   E  + +++ NL+ NA+K+   GG V+V  G   GR Q + + D G GI
Sbjct: 397 --SGSRTTLIGVEPLLGEMVYNLVDNAIKYNREGGEVNVWAGTHLGRPQLV-VTDTGIGI 453

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +   V   F +   +      G GLGL I +   + H  +  + S   +G  +    
Sbjct: 454 PLEDQERVFERFYRVDKSHSRQTGGTGLGLSIVKHAASLHSAEITVNSTPGQGTRIEVTF 513

Query: 473 P 473
           P
Sbjct: 514 P 514


>gi|113460548|ref|YP_718612.1| sensor histidine kinase [Haemophilus somnus 129PT]
 gi|112822591|gb|ABI24680.1| sensor histidine kinase [Haemophilus somnus 129PT]
          Length = 618

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 9/337 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L    +   V L    VV  +    I    V    + G+ +      FFT +   L KS
Sbjct: 24  SLLGVCILAVVALLTQIVVSLIFIGTIYWQDVARSIIFGLFSAPFVLYFFTLLVEKLEKS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + +        + ++E  +A+          E+ +  K+  + ++SHELRTPLN I+G 
Sbjct: 84  RLDLAKLVDNLRNEVSERILAERKLSVALSEIEKTSQDKTALMTTISHELRTPLNGIIGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++  + +     E  + Y+  I+ S   L ++ ++I+DL +I+A R EL     +L  
Sbjct: 144 SQILLDDKL----TEQQRNYLKTINVSAISLTHIFSDIIDLEKIDANRIELHYQPTNLCS 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            + +      L A ++ ++     D  L   +  D   + Q++ NL++NAVKFT   G++
Sbjct: 200 FLNDITNFATLMAAQRKLKFELVCDKDLPDWLMLDSARLSQILWNLINNAVKFTPA-GKI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V   +      ++ D G GIA+GE+  + T + Q          G G+GL ++++I 
Sbjct: 259 KLKVSRLTDDTFSFALSDTGVGIAKGELDKIFTMYYQV-QETDHKPIGSGIGLAVSKAIA 317

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              GG   + S+L +G      L    V      +++
Sbjct: 318 GLMGGDLTVESQLHQGATFTLTLQAKAVEKPAESESN 354


>gi|295090648|emb|CBK76755.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 467

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAE 243
           I  A  L   L F   + + L K         A       EL     +          A 
Sbjct: 175 IIFAISLILLLFFTKTVYFPLKKITRAATEYAAGNLSYSIELHTQDEMGYLANTLNYMAM 234

Query: 244 EENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           E N     + +F+A++SH+ R+PL +I G+ E I     G +  E Y++Y+  I    + 
Sbjct: 235 ELNKMEEYQHKFIANVSHDFRSPLTSIKGYLEAIID---GTIPPELYEKYLNIIIAETER 291

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L   +L L+ +++  + L+ +   +  ++++     +     K I        S+  
Sbjct: 292 LNKLTQGMLTLNSLDSKGF-LTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQM 350

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+AD   ++QV+ NL+ NA+KF+     +++ V     +  ++S+KD G GI +  I  +
Sbjct: 351 VFADLGKIQQVLYNLIDNAIKFSHEDSVIYIQVAEKHEK-IFVSVKDTGVGIPKDSIKKI 409

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +    ++G GLGL I + I+  H     + S    G E I  LP  
Sbjct: 410 WERFYKSDPSRGKDKKGTGLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPKA 464


>gi|283798621|ref|ZP_06347774.1| sensory box histidine kinase [Clostridium sp. M62/1]
 gi|291073607|gb|EFE10971.1| sensory box histidine kinase [Clostridium sp. M62/1]
          Length = 467

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAE 243
           I  A  L   L F   + + L K         A       EL     +          A 
Sbjct: 175 IIFAISLILLLFFTKTVYFPLKKITRAATEYAAGNLSYSIELHTQDEMGYLANTLNYMAM 234

Query: 244 EENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           E N     + +F+A++SH+ R+PL +I G+ E I     G +  E Y++Y+  I    + 
Sbjct: 235 ELNKMEEYQHKFIANVSHDFRSPLTSIKGYLEAIID---GTIPPELYEKYLNIIIAETER 291

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L   +L L+ +++  + L+ +   +  ++++     +     K I        S+  
Sbjct: 292 LNKLTQGMLTLNSLDSKGF-LTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQM 350

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V+AD   ++QV+ NL+ NA+KF+     +++ V     +  ++S+KD G GI +  I  +
Sbjct: 351 VFADLGKIQQVLYNLIDNAIKFSHEDSVIYIQVAEKHEK-IFVSVKDTGVGIPKDSIKKI 409

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   +    ++G GLGL I + I+  H     + S    G E I  LP  
Sbjct: 410 WERFYKSDPSRGKDKKGTGLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPKA 464


>gi|62289292|ref|YP_221085.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82699222|ref|YP_413796.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|148559291|ref|YP_001258336.1| putative sensor histidine kinase [Brucella ovis ATCC 25840]
 gi|189023545|ref|YP_001934313.1| sensor histidine kinase, hypothetical [Brucella abortus S19]
 gi|225851845|ref|YP_002732078.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|237814782|ref|ZP_04593780.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|254693093|ref|ZP_05154921.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|254696734|ref|ZP_05158562.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701117|ref|ZP_05162945.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254707960|ref|ZP_05169788.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|254713120|ref|ZP_05174931.1| histidine kinase [Brucella ceti M644/93/1]
 gi|254716526|ref|ZP_05178337.1| histidine kinase [Brucella ceti M13/05/1]
 gi|254729644|ref|ZP_05188222.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|256159001|ref|ZP_05456838.1| histidine kinase [Brucella ceti M490/95/1]
 gi|256254359|ref|ZP_05459895.1| histidine kinase [Brucella ceti B1/94]
 gi|256264640|ref|ZP_05467172.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256368759|ref|YP_003106265.1| sensor histidine kinase, putative [Brucella microti CCM 4915]
 gi|260168090|ref|ZP_05754901.1| sensor histidine kinase, putative [Brucella sp. F5/99]
 gi|260545952|ref|ZP_05821693.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|260563386|ref|ZP_05833872.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260757304|ref|ZP_05869652.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260761127|ref|ZP_05873470.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261213329|ref|ZP_05927610.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|261218322|ref|ZP_05932603.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261221520|ref|ZP_05935801.1| histidine kinase [Brucella ceti B1/94]
 gi|261315451|ref|ZP_05954648.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261320829|ref|ZP_05960026.1| histidine kinase [Brucella ceti M644/93/1]
 gi|261751652|ref|ZP_05995361.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261757541|ref|ZP_06001250.1| histidine kinase [Brucella sp. F5/99]
 gi|265997483|ref|ZP_06110040.1| histidine kinase [Brucella ceti M490/95/1]
 gi|294851687|ref|ZP_06792360.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|62195424|gb|AAX73724.1| sensor histidine kinase, hypothetical [Brucella abortus bv. 1 str.
           9-941]
 gi|82615323|emb|CAJ10284.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|148370548|gb|ABQ60527.1| putative sensor histidine kinase [Brucella ovis ATCC 25840]
 gi|189019117|gb|ACD71839.1| sensor histidine kinase, hypothetical [Brucella abortus S19]
 gi|225640210|gb|ACO00124.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|237789619|gb|EEP63829.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|255998917|gb|ACU47316.1| sensor histidine kinase, putative [Brucella microti CCM 4915]
 gi|260097359|gb|EEW81234.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|260153402|gb|EEW88494.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260667622|gb|EEX54562.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260671559|gb|EEX58380.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260914936|gb|EEX81797.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|260920104|gb|EEX86757.1| histidine kinase [Brucella ceti B1/94]
 gi|260923411|gb|EEX89979.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261293519|gb|EEX97015.1| histidine kinase [Brucella ceti M644/93/1]
 gi|261304477|gb|EEY07974.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261737525|gb|EEY25521.1| histidine kinase [Brucella sp. F5/99]
 gi|261741405|gb|EEY29331.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|262551951|gb|EEZ07941.1| histidine kinase [Brucella ceti M490/95/1]
 gi|263095008|gb|EEZ18716.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|294820276|gb|EFG37275.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|326408341|gb|ADZ65406.1| sensor histidine kinase, hypothetical [Brucella melitensis M28]
 gi|326538055|gb|ADZ86270.1| histidine kinase [Brucella melitensis M5-90]
          Length = 438

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|228998513|ref|ZP_04158101.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
 gi|229005989|ref|ZP_04163679.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228755257|gb|EEM04612.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228761238|gb|EEM10196.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
          Length = 449

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 6/237 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           KR       +  F++++SHE ++PL++I GFS+ ++   +          Y+  I    +
Sbjct: 209 KRLRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDLTKS---EQTHYLEIIESESR 265

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            + +L  ++L L+ ++     L + +  L   +++ I ML+   + +  E+  ++D    
Sbjct: 266 RMSSLCKQLLILASLDKEDLTLRKQSFDLGKQIKDTIFMLE--WEWRTKELAVEMDVPNM 323

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            ++ DE  + QV +NL +N++KFT  GG +             ISI D G GI E EI  
Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEW-RISITDMGIGIPENEIKK 382

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   F +   A      G GLGL I + ++  H G   + S+L +G      LP  +
Sbjct: 383 IFDRFHKVDTARNRNVNGSGLGLSIVKKVIDLHSGAITVDSELGKGTIFSIYLPKQQ 439


>gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 993

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E  + A++ N AKS FLASMSHE+RTP+ AI+G  E+   + +     
Sbjct: 693 ITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGKI 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +   HRS   L+ LI E LDL+RIEAG  +LS +  SL  +    I +   +A 
Sbjct: 753 PSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAG 810

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E+  +         W D   +RQV+ N+L NA+KFT   G V VT+  T       
Sbjct: 811 EKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQ-GAVVVTLDVTHDSPEST 869

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I+D+G GI       V   F Q S    +   G GLGL I + ++    G   + 
Sbjct: 870 RVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLH 929

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDN 485
           S+  +G  V   LP TRV    +P D+
Sbjct: 930 SEPGKGTLVTIDLPLTRVSEPVLPADD 956


>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1334

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 6/230 (2%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N +K RF  ++SHE RTPL  I+   E++       +    Y + +  IHR+   +  L
Sbjct: 811  LNQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVN-IHRNTLRMKRL 867

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I E+LD  + E G  +   S   +   + E  +  +  A+ K I +          VW D
Sbjct: 868  ITELLDFRKQEQGFEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDKNLEVWFD 927

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               + +VI NLLSNA K+T +GG + ++V         +++ D G GIAE  +  +   F
Sbjct: 928  VVQLEKVIYNLLSNAFKYTPLGGTISLSV-QEYENSVVVTVSDTGVGIAEESLDKIFDRF 986

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q      + ++G G+GL +A+SI+  H G+  +RS   +G   +  LP 
Sbjct: 987  YQVDS--MNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|239787453|emb|CAX83925.1| Sensor protein [uncultured bacterium]
          Length = 844

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 148/379 (39%), Gaps = 12/379 (3%)

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
               V  + LL  Q A  L  T+    +P         +     L   L +  L    + 
Sbjct: 17  AASGVAGVALLGLQGAEELLRTVAPQSDPQVVAQAVSALRMRMALAALLGLGVLGLAAVL 76

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
               +      V    Q +      +           +    +     +      +  A+
Sbjct: 77  AVRAIVLPVEAVTQQAQRLAEGETAEAVPCLGDGETEALTVALERIRSRLTQSEAALAAQ 136

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L  +++      ++ R +A   + AKS F+A+MSHE+RTP+N +LG  E++    + 
Sbjct: 137 TRTLEEQVKQRTREVEDARDQALAASQAKSLFMATMSHEIRTPMNVVLGMLELLGDLPL- 195

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
                  +E +   + SG+ L+ LI+ +LD ++IEA R  L E    L  +V E  + L 
Sbjct: 196 ---EHERREQLRLAYGSGKTLMALIDNVLDFAKIEADRLTLDEMDFDLRALVDESALTLA 252

Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWT 396
             A  + IE+      S+ + V  D   +RQ+  NLL NA+KFT  GG V +    VG  
Sbjct: 253 TLAHTREIELTPFFPHSMPTAVRGDINRLRQIFTNLLGNAIKFTPEGGSVELYGGPVGLV 312

Query: 397 SGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            G        ++D GPG+   +   +   F QG         G GLGL I++ ++   GG
Sbjct: 313 PGNRIEYLFEVRDTGPGVPVADRERIFEQFAQGEHRHDQGYSGSGLGLAISKRLVEMMGG 372

Query: 455 QFLIRSKL--REGVEVIAI 471
              +   L    G      
Sbjct: 373 AIGVEENLYAPSGSVFHFT 391


>gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 786

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 152/288 (52%), Gaps = 9/288 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTP 263
            +  ++ +         +       +   E     + RAE  N AKS FLA+MSHELRTP
Sbjct: 480 ERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEFLANMSHELRTP 539

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI+GF+E++E E  G L +  Y +Y  DI +SG +LL++I++IL +SRIEA R +L  
Sbjct: 540 LNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVR 599

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I L   +   + ++   A  K++ I  ++  +L  V ADE+ ++Q++LN++ NAVKFT
Sbjct: 600 RDIDLGTALTAALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQILLNIIQNAVKFT 658

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GRV +  G +     ++ I D G GI +  I  +   F Q    +  + +G GLGL 
Sbjct: 659 PERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTRSYKGSGLGLA 717

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHES 488
           IA+S    HGG   IRS+   G  V+  LP     R+     E   ++
Sbjct: 718 IARSTAELHGGSLRIRSEEGIGTLVLVRLPMPTPERLAEVAREAERDT 765


>gi|120434489|ref|YP_860187.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117576639|emb|CAL65108.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 359

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 24/348 (6%)

Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216
           F L  A+++S F  V+           +        +      F  I Y + +   + + 
Sbjct: 11  FALRTALYISVFLSVIMGLFAFFEVQSIWVSLFIFAIFCYFFSFLIIQYRVERFIYRRIK 70

Query: 217 CQAEKDDLIAELEVA--------KSLSDETRKRAEEENLA----------KSRFLASMSH 258
              +   L+    ++         SL+ E +K AE++ L           +  F+ ++SH
Sbjct: 71  KVYDNVSLLDSKTLSPNQITTDMSSLTREVKKFAEDKKLEIETLKVREGYRKEFMGNVSH 130

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPL  + G+   +        +    K+Y+   +R  + L+ ++ ++  ++++E G 
Sbjct: 131 ELKTPLFTVQGYILTLLDGAH--KDKVIRKKYLARANRGVERLIYIVKDLDMITKLETGD 188

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLS 377
             L      ++++++    +L+++A +K I +    D      V AD + ++QV+ NL+ 
Sbjct: 189 LHLRYETFDIVELIQASFDLLEMKAAKKEITLTFDFDYEEPIYVRADRERIQQVLTNLIV 248

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           N+VK+   GG   +++         +   DNG GI    IP +   F +   +    E G
Sbjct: 249 NSVKYGKKGGTTEISIENLIKNKVIVRCTDNGEGIENENIPRLFERFYRVDKSGSRKEGG 308

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
            GLGL I + I+  H  +  + S    G E    L   +    IPED+
Sbjct: 309 SGLGLSIVKHILEAHKEKIYVESVFGVGSEFSFTLEKRK---KIPEDS 353


>gi|33863684|ref|NP_895244.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33635267|emb|CAE21592.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 685

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 158/464 (34%), Gaps = 46/464 (9%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLV 112
            L  A +    T      +W L+ L      L++ + V      +  +          L 
Sbjct: 202 ALASAALTRQVTIAVFISIWVLVILGAVFNALTITQPVKELLRGVRAIASGNFEARIALP 261

Query: 113 GQIAIG-LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
               +G L      +               +A  +   S+ A           +    + 
Sbjct: 262 MGGELGELLNGFNAMASQLEAYDAANIEELTAAQVKQQSLIATMADGALLLDEVGQIVLA 321

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              + +              +          +   L      I      +  L       
Sbjct: 322 NPTARRIFRWEGRNLEGQELLNELPEIIANELHDPLQSLLRNIGESNDLRCSLEEPSRTL 381

Query: 232 KSLSDETRK-----------------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +    R                  R  E N A+SRF++++SHELRTPL  I  + E +
Sbjct: 382 RIVLQSVRDQSGETLKGIAITVQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETL 441

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                  L+ E  KE++G  +     L  L+N++LDLSR+E+GR  +    + L   + +
Sbjct: 442 HD-LGDQLSEEEKKEFLGIANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQ 499

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +   +L A +K I I    D  L ++  +   + QV+ NL+ N +KF+  GG + V   
Sbjct: 500 TLRNYRLNADDKQIHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAY 559

Query: 395 WTSGR----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
                                         + + D G GI + +   +   F +   A+ 
Sbjct: 560 TWPDSCKMSPIESSKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVH 619

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   G GLGL I + I+  HGGQ  + S++  G      LP  +
Sbjct: 620 TEA-GTGLGLSIVRGIIEKHGGQIRMASEVELGTTFWFDLPLEQ 662


>gi|238062152|ref|ZP_04606861.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
 gi|237883963|gb|EEP72791.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
          Length = 453

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 148/377 (39%), Gaps = 27/377 (7%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSI------SALSNFMLPYAVFLSFFPVVVA 173
            W  L    P             A L+  LS+      + +       A   +  P  +A
Sbjct: 79  LWVDLAPARPLPGGRYEPQSGAVARLVDMLSVVGRGNDTVVRMSRRVPANAQALTPERLA 138

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK---------DDL 224
                + S           L               +  +  L+ + ++         + L
Sbjct: 139 ELRAELGSTAPASALDELALQNEQLIAALDEVRSQRDELAELNEELQETNRGVMALYNQL 198

Query: 225 IAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             ELE          +  DE   +    + +KSRFLA++SHELR P+ AI+G S ++   
Sbjct: 199 TEELEATNRGVVALYAELDEKSAQLRTASESKSRFLANVSHELRAPVTAIIGLSRLLADS 258

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              PL  E  ++ +G I  S   LL L+N++LDL++ E+GR E + + + L  +  +   
Sbjct: 259 ASDPLTAEQVRQ-VGLIRDSAVDLLGLVNDLLDLAKAESGRLEPNWTEVDLRAVFGQLRG 317

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
            L+  +    +++  +  P   +V +DE  + QV+ NLL N +KFT   G V +      
Sbjct: 318 TLRALSNRPGVQLVVEDPPPPGTVRSDEVLLAQVLRNLLHNGLKFTER-GEVRLRAE-VR 375

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               ++++ D G GIA      +   F Q      +   G GLGL  A+ +    GG   
Sbjct: 376 DGRWWLAVSDTGAGIAPELHERIFEEFYQVPG--NTRVGGTGLGLSYARRVTHLLGGTLE 433

Query: 458 IRSKLREGVEVIAILPN 474
           + S+   G      LP 
Sbjct: 434 LTSEPGRGSTFTVTLPV 450


>gi|229102594|ref|ZP_04233298.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28]
 gi|228680821|gb|EEL34994.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28]
          Length = 351

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 149/355 (41%), Gaps = 16/355 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               +  +         +  Y S++++ AL I+         +  + F  +V+      +
Sbjct: 9   VIGAVLALFSFLTIIWSIAFYVSSSIINALEINVSPFVTFLISDMVGFVFIVLIWVLIGV 68

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +     +  +  ++                 +VKI + +    ++   ++    ++DE  
Sbjct: 69  LMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYDGEIGVLVKSINDMTDELN 122

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 123 ----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---AEEKRKHYLTIIETETT 175

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 176 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 233

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSGGTITIRLK-EHETVVQVHIRDSGIGISEEQKQH 292

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           V   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P 
Sbjct: 293 VFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347


>gi|121996907|ref|YP_001001694.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121588312|gb|ABM60892.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 446

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 150/440 (34%), Gaps = 35/440 (7%)

Query: 53  PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112
           P ++L +  + T +    +   W + +LA   A   L  +      ++  +  W      
Sbjct: 7   PGYLLTLLGVATLWAGVGLATGWWVESLAALLAMGYLWNEY-----QLWRLERWLRVGRK 61

Query: 113 GQIAIG-LCWTLLTLVEPGTWTPEYLT----------------IYKSATLLIALSISALS 155
               I    W  +          +                       ATL++      L 
Sbjct: 62  LDPPISRGVWGEVFHALHRRQRRQRERRHRLRRVIREYRDSAKAMPDATLVLYADDRVLW 121

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                  +    +P         ++        L                   ++    L
Sbjct: 122 WNNAARHLLGLTWPGDEGQRISNLLRQPEFKEFLDTATEHTAPLTMPSPVSPRRTLELRL 181

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                   L+   +++++   ET +R          F+A++SHEL+TPL  I G +E + 
Sbjct: 182 VPYGRNQRLLIARDISRTQRLETIRR---------DFVANVSHELKTPLTVIYGVAEEMG 232

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E         +   I  +      +  L+ ++L LSR+E G   + E  + +  ++ E 
Sbjct: 233 EEL--APEQPAWAGSIRLLQDQSARMQRLVQDLLTLSRLETGSLAVEEDPVDMKVLLEEV 290

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
               Q  + E    I    +P +  V      +R  + NL+SNAV++T  GG + V    
Sbjct: 291 CAEAQTLSGEHQHRIELDAEPGV-FVRGSYGELRSAVSNLVSNAVRYTPAGGTIRVRWRA 349

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +       + D+G GI    IP +   F +      +A  G GLGL I + +M  HGG 
Sbjct: 350 DA-HSARCGVADSGIGIPREHIPRITERFYRVDKGRSNATGGTGLGLAIVKHVMHRHGGW 408

Query: 456 FLIRSKLREGVEVIAILPNT 475
             + S+  +G     + P  
Sbjct: 409 LNVDSEPDQGSTFTLVFPAR 428


>gi|15903149|ref|NP_358699.1| sensory box sensor histidine kinase [Streptococcus pneumoniae R6]
 gi|116515922|ref|YP_816555.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|148985121|ref|ZP_01818360.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|148989248|ref|ZP_01820628.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998656|ref|ZP_01826095.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149007116|ref|ZP_01830785.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149012277|ref|ZP_01833346.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|149019218|ref|ZP_01834580.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484878|ref|ZP_02709823.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|168486548|ref|ZP_02711056.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|168491147|ref|ZP_02715290.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|168493148|ref|ZP_02717291.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|168577195|ref|ZP_02723004.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|169833288|ref|YP_001694657.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|182684046|ref|YP_001835793.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|221231921|ref|YP_002511073.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854692|ref|YP_002736204.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225856893|ref|YP_002738404.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225859007|ref|YP_002740517.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225860940|ref|YP_002742449.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649928|ref|ZP_04524180.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974]
 gi|237822523|ref|ZP_04598368.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230883|ref|ZP_06964564.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254364|ref|ZP_06977950.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502778|ref|YP_003724718.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067875|ref|YP_003876841.1| signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|307127186|ref|YP_003879217.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|15458731|gb|AAK99909.1| Histidine kinase [Streptococcus pneumoniae R6]
 gi|116076498|gb|ABJ54218.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|147755493|gb|EDK62541.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761420|gb|EDK68386.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147763603|gb|EDK70538.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922566|gb|EDK73684.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925226|gb|EDK76305.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931088|gb|EDK82067.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995790|gb|ACA36402.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|172041979|gb|EDT50025.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|182629380|gb|ACB90328.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|183570459|gb|EDT90987.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|183574369|gb|EDT94897.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|183576651|gb|EDT97179.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|183577215|gb|EDT97743.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|220674381|emb|CAR68931.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225721122|gb|ACO16976.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225723105|gb|ACO18958.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225725453|gb|ACO21305.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225728161|gb|ACO24012.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238373|gb|ADI69504.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794309|emb|CBW36734.1| sensor histidine kinase [Streptococcus pneumoniae INV104]
 gi|301800147|emb|CBW32752.1| sensor histidine kinase [Streptococcus pneumoniae OXC141]
 gi|301801918|emb|CBW34642.1| sensor histidine kinase [Streptococcus pneumoniae INV200]
 gi|306409412|gb|ADM84839.1| Signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|306484248|gb|ADM91117.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|327389462|gb|EGE87807.1| sensory box protein [Streptococcus pneumoniae GA04375]
 gi|332074836|gb|EGI85308.1| sensory box protein [Streptococcus pneumoniae GA41301]
 gi|332201689|gb|EGJ15759.1| sensory box protein [Streptococcus pneumoniae GA47368]
          Length = 449

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
 gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
          Length = 1183

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ F A++SHE RTPL  +LG  E +      P   E Y + +  +HR+G  LL L+N +
Sbjct: 313 KTNFFANVSHEFRTPLTLVLGPLEEML---ADPELPEAYTQRLTVMHRNGLRLLKLVNTV 369

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD SR+E+GR         L D         +   +   + +     P    V+ D+   
Sbjct: 370 LDFSRLESGRLAAHYEPTDLADYTGRLASTFRSATERTGVRLVVDCPPLAEPVYVDQDMW 429

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +++LNL+SNAVKFT   G + + V         + + D G GI   E+P V   F +  
Sbjct: 430 EKIVLNLVSNAVKFTFD-GEIQIRVRPV-DGAARLEVTDTGVGIHPDELPHVFERFHRVP 487

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
                + +G G+GL + + ++  HGGQ    S++ +G             LP  RV +  
Sbjct: 488 GVRSRSHEGTGIGLALVRELVEMHGGQVSASSQVDKGSTFAVTIPFGTAHLPAERVADAD 547

Query: 482 PED 484
           P +
Sbjct: 548 PTE 550


>gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 599

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 13/270 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E   A+   +  ++ AE  N+AK++FLA+MSHE+RTPLN ILG   ++    +     
Sbjct: 200 LTEQRAAEEALESAKEVAESANIAKTQFLANMSHEIRTPLNGILGMLRLLRDHDL----P 255

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               EY+     SG++LL ++N++L LS+IEA    + +  ++L  +    + + + +  
Sbjct: 256 PEQAEYVTTAETSGRNLLAILNDVLSLSQIEANAVHVCQEGLNLPLLADAVLRVFKAQID 315

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
              +E+   IDP++   + AD+  +RQ++ NL+ NA+KFT   G V + +     R    
Sbjct: 316 NSGVELGFTIDPTIPHDLCADQGKLRQILFNLVGNALKFT-RNGSVRIDITAADDRRHPG 374

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 +++D G GIA+ ++ +V   F Q   +      G GLGLPI   +++  GG   
Sbjct: 375 DIILIFAVEDTGIGIAQDQLVSVFAPFTQADGSYARKYGGAGLGLPIVSRLVSLLGGSVC 434

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           I S+  +G  V+  +   R  + +P    E
Sbjct: 435 IDSQPGQGTLVVFSV-AARADHGLPAYAAE 463


>gi|168036813|ref|XP_001770900.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162677764|gb|EDQ64230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 472

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            E  +  E  N AKS+FLA MSHELRTP+  +LG  +++ L  +        +E +  + 
Sbjct: 69  REACEAIEAANRAKSQFLAMMSHELRTPMTGVLGMLDLLHLTKL----EPQQQELVKIMQ 124

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
            S + L+ +IN ILD  ++EAGR  L E   SL D+V +   + + + QEK +       
Sbjct: 125 ESAEGLMQVINNILDFCKMEAGRLFLEEIDFSLGDLVEQVATLYEKKLQEKGLRFVINGA 184

Query: 356 PSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK--DNGPGI 412
                +V  D   +RQ+I+NL+SNA+KFT   G + ++  + SG+  Y+ +K  D G GI
Sbjct: 185 AGATVAVRGDPVRLRQIIVNLVSNAIKFTEK-GTITLSWRYVSGKNHYLEVKVADTGSGI 243

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAI 471
           A+  + T+ T+  Q          G GLGL I + ++    G+ L + S++ +G  V  +
Sbjct: 244 AKELLGTLFTA-SQAGAPR-RDSSGTGLGLAICKGLLELMKGKMLPVISEMGKGTIVTFV 301

Query: 472 LPNTRVLNFI 481
           LP     +  
Sbjct: 302 LPLLPAEDSS 311


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 9/355 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W  +  +           +     LL A S+  L  F    +  ++     +  + + + 
Sbjct: 363 WAFIAEISTSEAYRPIRQLETLVILLGAGSLLLLILFSRWLSHSITAPLRSLTAAAEQVA 422

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +            +        H+ +S    +      +    EL+    L+ +   
Sbjct: 423 DGALDHPIAIERTDDDIDRLAQAFRHMQRSVKDKIEL---IERQTQELQQQVKLTHKQNL 479

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++ +  K   LA+ SHELRTP++ I G +E +          E  ++ +G I +S   
Sbjct: 480 SLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQD--LTEGQQKQLGLIIKSADG 537

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G+ E+    +S   ++R  + + Q   Q K + +       L  
Sbjct: 538 LARLVDDLLDYHQMRYGQLEIHPQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISPVELPP 597

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V ADE+ + QV+ NL+ NA+K+T   G+V ++     G    I + D G GIA   +  +
Sbjct: 598 VLADEQRLEQVLYNLVGNAIKYTPQ-GKVVLSA-LVEGNFLRIKVTDTGIGIAPDHLEHI 655

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q S  +   +QG GLGL I + ++   GG+  + S+   G      LP  
Sbjct: 656 FEPLVQMSPEVS--KQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLPLA 708


>gi|194432448|ref|ZP_03064735.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012]
 gi|194419335|gb|EDX35417.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012]
 gi|332095919|gb|EGJ00926.1| TMAO reductase sytem sensor TorS [Shigella dysenteriae 155-74]
          Length = 904

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R +   I +   I   +  ++  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGHPIRLATAIADDVPSALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATGPVPKTANQA 666


>gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
 gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
          Length = 818

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 407 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 466

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 467 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 522

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 523 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 582

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 583 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 641

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 642 GKVEAASAGKNRGTTFAITLPA 663


>gi|161830777|ref|YP_001596909.1| putative sensor protein gacS [Coxiella burnetii RSA 331]
 gi|161762644|gb|ABX78286.1| putative sensor protein gacS [Coxiella burnetii RSA 331]
          Length = 808

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 246 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTS 305

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 306 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRT 365

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 366 IELLQPVAHQKKLTLACEVDEGIPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 424

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 425 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 484

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 485 VKRYVDAMGGEITVDSEVGKGTCFTVIIP 513


>gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 662

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 5/294 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +     +     L   A+    I E + ++      R+ A   + AKS FL+  SH
Sbjct: 365 FWANVIVTALRDEAGELRGFAKVTRDITERKQSEEALKAAREAAVLASQAKSEFLSRTSH 424

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTP++AI+GF++V+  E         ++     I ++ +HLL+LIN++LD+S IEAG 
Sbjct: 425 ELRTPMSAIIGFAQVL--ELDHDDLAPRHQTATTQILKAARHLLSLINDLLDVSSIEAGT 482

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L    +SL+D++ E   +     +  N+      + +  +V  D +   QV+LNLL+N
Sbjct: 483 QALKLEEVSLLDVLEEAYSLAAPIVKAANLSFQFDQESAQYTVQCDRRRTIQVVLNLLTN 542

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A K+   G  V +TV    G    +S+ D+G GI +  IP + T F +     +    G 
Sbjct: 543 AAKYNREGAYVALTVQP-DGNDVVVSVTDDGAGIPDERIPRLFTPFDRLGQEKQRRTDGS 601

Query: 439 GLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           GLGL +++S++   GG+   R+      G      LP +R        + E+ +
Sbjct: 602 GLGLALSKSLVETMGGRIGFRNATPPDRGASFWFTLPISRAGRGPEITDPETRE 655


>gi|325289763|ref|YP_004265944.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965164|gb|ADY55943.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 502

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 13/335 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I     ++    L   ++      +       I  +      L   L   LS        
Sbjct: 173 IGTVQVSMGTAPLKEILYHILIAFLSLSLLALIAGILAFIPVLRKTLV-PLSKMAETVEQ 231

Query: 207 LFKSNVKIL----SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           +   N+         Q E D L           + + K  +E      RF+A  SHELRT
Sbjct: 232 INSGNLAERFPVEQGQIEIDQLAGSFNRMLERLELSFKAEQEAKEQMRRFVADASHELRT 291

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL +I GF EV+    +     +  ++ +  +    + +  LI ++L L++++    ++ 
Sbjct: 292 PLTSIHGFLEVLLRGAV--NQPDKLEKSLKSMLTESERMKKLIQDLLQLAKLDR-TPQIE 348

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
                L ++++E    L++ A  + + I      S      DE  ++QVILNL  NAV+ 
Sbjct: 349 LKEGRLDNLIKEMEPQLKMLAGLRKVTINL---GSALRCRFDEDKIKQVILNLFQNAVQH 405

Query: 383 TA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           T    GR+ +++  T+     I +KDNGPGIA   +P +   F +   +      G GLG
Sbjct: 406 TEAEEGRIELSLKDTANG-VEIEVKDNGPGIAAKHLPYLFDRFYRCDSSRTRKHGGSGLG 464

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           L I +SI+  HGG   + +   +G      LP  +
Sbjct: 465 LSITRSIVELHGGTIKVATVEGKGTAFQVGLPLNK 499


>gi|311031670|ref|ZP_07709760.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
 gi|311032342|ref|ZP_07710432.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
          Length = 549

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 14/273 (5%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDE---------TRKRAEEENLAKSRFLASMSHELRT 262
           +  ++   E       LEVA     E          +   E E+  K+ FLA +SHELRT
Sbjct: 279 LDRMTKVDELTQNTETLEVANLHLKENERKLRLIIEKNEVERESKTKTNFLAMISHELRT 338

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG--RYE 320
           PLN+I+G+S+V+E +   PL +   K  +  I  S +HLL LIN IL+L RI+      +
Sbjct: 339 PLNSIIGYSQVLESDQKDPLTD-KQKSRLAKILSSSRHLLQLINNILELIRIDTNPETIK 397

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
            +   I + D V + +  +   A+EK I ++ + D    ++  D    +QV++NLL+NA+
Sbjct: 398 TNVKPIRIKDAVWDSLHAVSNNAKEKGISLYIEKDVEDITIEIDPIRFQQVLVNLLNNAI 457

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           K+    G V +      GR   I +KD G GI +     +   F + + AI    +G G+
Sbjct: 458 KYNKENGTVTL-YWRVDGRYLAIFVKDTGIGIPQSHHDNIFEPFYRVNHAIP-GVEGTGI 515

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL + +  +    G   + S    G      +P
Sbjct: 516 GLTLVKQNVLEMKGTVGVSSIEGTGSTFWVKVP 548


>gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
 gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
          Length = 771

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|83943103|ref|ZP_00955563.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins)
           [Sulfitobacter sp. EE-36]
 gi|83846111|gb|EAP83988.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins)
           [Sulfitobacter sp. EE-36]
          Length = 515

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 173/481 (35%), Gaps = 58/481 (12%)

Query: 23  LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82
           L  +  + + F+ ++  + +      S +  +   +  ++ +      IF +        
Sbjct: 70  LAYQPSAPVTFNLQLTFVSLLIAIAGSTVGIMVAGMFRSLASTIIGGTIFGVAVSAMHYT 129

Query: 83  YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT--PEYLTIY 140
                 +             V  W    L+G + + +  +   L                
Sbjct: 130 GMVAYRV-----------EGVVTWDRGYLIGSVILAVVLSTAALYLGSRSARWSGLQMTG 178

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
                +I L  + ++ F       +   P             +  +  L  ++    +  
Sbjct: 179 VLTLAIIGLHFTGMAAFS---VDCIGLKPGY----------TNPEEYKLLALVIAGTATT 225

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             +          + +   E    +  +E       + R  AE  + AKS F++ +SHEL
Sbjct: 226 ITLGG--------LFTYFIENRTRMESIE----ELRKARDAAEGASRAKSEFMSVLSHEL 273

Query: 261 RTPLNAILGFSE-----VIELETMGPLNNETYKEYIGDIHRSGQ-----------HLLNL 304
           RTPL  ++G++                     +++   I    +           HLL +
Sbjct: 274 RTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHLLTI 333

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN+ILD + IE    +L+++      ++ +     Q  AQ K++ +          V AD
Sbjct: 334 INDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLHI--PDGSLDVNAD 391

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
                Q+++NL+ NA+KF+  G  + +      G G    ++DNG G+ + ++ ++  +F
Sbjct: 392 RGRCLQILINLVGNALKFS-KGKDIFLRAE-VDGGGFRFEVEDNGVGMEQKDLESIFQAF 449

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            Q   A   +E G GLGL I + +   HGG   + S + +G +     P++ V    P  
Sbjct: 450 TQIESADNRSEGGTGLGLAICKKLALAHGGDISVASTVGKGTKFSVFFPHSLVSTGRPSQ 509

Query: 485 N 485
           +
Sbjct: 510 S 510


>gi|311696246|gb|ADP99119.1| multi-sensor signal transduction histidine kinase [marine bacterium
           HP15]
          Length = 439

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHE+RTPL  I G+ E +            ++  I  +      
Sbjct: 197 RLYQLEQMRRDFVGNVSHEMRTPLTVISGYLETLVDNA--ADLPPKWRRAINTMAAQSSR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI +++ LSRIE G   ++++   +  ++ +     +  + EK  EI   I      
Sbjct: 255 MEALITDLILLSRIETGEQTVNDTLTDVDQLLTQICHDARALSGEKQHEITVHI-GDHRL 313

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  DE  +R    NL+ NAVK+T   G++ V+   T+  G ++S++D G GI    IP +
Sbjct: 314 LKGDESQLRSAFSNLIFNAVKYTPANGQIIVSWS-TNREGAHLSVRDTGIGIDPVHIPRL 372

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F +   +      G GLGL I + ++ NH G   IRS++ EG E I   P  R++  
Sbjct: 373 TERFYRADPSRHKDTGGTGLGLAIVKHVLLNHDGNLEIRSRIGEGSEFICHFPRERLVER 432

Query: 481 IPEDNH 486
           IPE   
Sbjct: 433 IPEKAE 438


>gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
 gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
          Length = 1901

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 19/249 (7%)

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            + +E   +K RFL++MSHE+RTPL  I G    ++  T+    NE  ++Y   I  S   
Sbjct: 1224 KLKEAMDSKGRFLSNMSHEIRTPLIGISGMVTFLQDTTL----NEEQRDYTNTIQTSANS 1279

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            LL +IN+ILDLS+++AG  +L+        ++ +   ++   A  K +E+   ++  +  
Sbjct: 1280 LLMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPA 1339

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------WTSGRGQYISIKDNGP 410
             V  D+  +RQV+LN++ NA+KFT+  G V               T       SI D G 
Sbjct: 1340 WVKGDKVRIRQVLLNVIGNAIKFTSR-GEVFSKCRVFNPEGAPPQTDEIMLEFSIIDTGR 1398

Query: 411  GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
            G ++ E   +   F Q   +      G GLGL I++ ++  HGG+    +   +G     
Sbjct: 1399 GFSQEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRMEGSAIPNKGSTFTF 1458

Query: 471  I----LPNT 475
                 LP  
Sbjct: 1459 TARFGLPTE 1467


>gi|229589254|ref|YP_002871373.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361120|emb|CAY47983.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 782

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 124/273 (45%), Gaps = 6/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E      +L  + +  +  +  A     A++ FLA+MSHE+R
Sbjct: 253 RLTEYLGQLEDIVSARTLELKASNQQLSQSNAELEAAKMHALGMAQARAAFLANMSHEIR 312

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    N   ++ +   H SG+ L+ L+N+ILDLS+ +AG+ EL
Sbjct: 313 TPLNGLLGMIALSLDSPL----NAEQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 368

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 369 ERIPFDLGSLVEDTANLLSQNAAPSVELTCLIDPQFPAQVLGDPTRVRQIVSNLLSNALK 428

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +         I + D G GIA+     +   F Q    I     G GLG
Sbjct: 429 FT-RFGRVDVRLSALE-GRVRIEVCDTGIGIAQEAQVKIFQPFTQAGAGITRQFGGTGLG 486

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L +  ++     G+  I S++  G +  A LP 
Sbjct: 487 LALTHNLCEAMKGRLSISSEVGFGSQFCADLPL 519


>gi|196039677|ref|ZP_03106981.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196029380|gb|EDX67983.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 453

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 15/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKIL 215
           +L +        ++  +S   ++S  V  IS  LA      +    + +  + +  +K  
Sbjct: 148 VLTHVNAKIIEIIMFTISVGIVISGIVFLISRRLANSFVKPIESIIHASSQIAEGTLKKK 207

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L         +SD    + E+    K+ F+AS+SHE+RTPL  I G+SE ++
Sbjct: 208 IKEDYPGELGELAHSLNHMSD----KIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK 263

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             T+  L  E  K+ +G I      L+ L+ E+LD SR+++  + L +  + L DI+ E 
Sbjct: 264 --TVDHLTEEEIKQGMGIISGETDRLIQLVEELLDFSRLQSNHFNLYKQKVQLYDILEET 321

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I  L   A+EK ++  + I+     +  D   ++Q+ LN++ NA+K++   G+V++    
Sbjct: 322 IWQLTPNAEEKQMQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSYKNGKVYIEATK 379

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G+   I +KD+G GIA+  +P +  SF Q    I +   G GLGL I + ++  HGG 
Sbjct: 380 NEGQ-AVIKVKDDGIGIAKEHLPYIEQSFYQ----INNHAIGAGLGLAIVKKMVELHGGT 434

Query: 456 FLIRSKLREGVEVIAILPN 474
             I SK   G  ++  LP 
Sbjct: 435 INIISKEGIGTTILIKLPL 453


>gi|183220974|ref|YP_001838970.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911069|ref|YP_001962624.1| two component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775745|gb|ABZ94046.1| Two component response regulator, part [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779396|gb|ABZ97694.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 540

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 8/265 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           + ++ +      K  L + +         T++  E    AK+ FLA +SHELRTPLN+I+
Sbjct: 280 QRDLDLTELNRYKSTLESLILERTLDLSRTKEELERAYKAKTEFLAHVSHELRTPLNSII 339

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           GFS++I+     P N+ T KEY+  I+  G  LL +INEIL L +IE+G+  L  S    
Sbjct: 340 GFSKLIQ----LPENDITGKEYLQYIYSGGTRLLKMINEILSLMKIESGQLNLQISEFKP 395

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +I R+ + ++Q +A  K +EI         ++ +D   ++Q++LNLLSNA+K+      
Sbjct: 396 EEIARQSLELIQPQADAKGMEIRFFPPIQSKNIRSDAGKIQQILLNLLSNAIKY-GDHSY 454

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           V     W        S++D GPGI E +   +  SF + +       +G GLGL I+Q +
Sbjct: 455 VEFHCEWIE-GRVTFSVRDFGPGITEEDQSRIFHSFTRLND--DGKIEGSGLGLSISQGL 511

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
               GG   + S   EG   I  +P
Sbjct: 512 AEKLGGNIELTSLWGEGSTFILKIP 536


>gi|149913627|ref|ZP_01902160.1| signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149812747|gb|EDM72576.1| signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 969

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 12/276 (4%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +     ++  ++L  +     +++E      +  +  DE R+ AE  + AKS FLA MSH
Sbjct: 409 LERQRDRNERELLEHRNNLQKMVSEQTERLRLEVAAHDEARREAEAADRAKSEFLAMMSH 468

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP+N +LG    +  + +    +   +  +G  + SGQ+LL ++N+ILD S+IE G 
Sbjct: 469 EIRTPMNGMLGLLHSLSEDRL----DPEQRHRLGAAYASGQNLLQILNDILDYSKIEHGG 524

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
            +   +  SL D+V + + +++  A  K + +   +  +L   VW D   +RQ++ NLLS
Sbjct: 525 IQPVNATFSLHDLVTDVMALIRPSADSKGLHLLLDMPDTLVDVVWGDVAKLRQILFNLLS 584

Query: 378 NAVKFTAIGGRV-HVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NA+KFT  G  +  +  GWT G        I D G G+A+     +  +F Q   A    
Sbjct: 585 NALKFTEEGEVILRLRAGWTQGDAHRVIFEISDTGRGVAQAAKARIFEAFEQEDGATSGK 644

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             G GLGL I++      G    + S    G     
Sbjct: 645 FGGTGLGLAISKRFADAIGATLTLESTKGVGSVFTL 680


>gi|48374236|gb|AAT41932.1| putative two component hybrid sensor kinase [Fremyella diplosiphon
           Fd33]
          Length = 582

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 18/284 (6%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAK--------------SLSDETRKRAEEENLAKS 250
             + + N ++L   AE      EL                  +  DE     ++ N  K+
Sbjct: 159 EEIQRQNQELLQAMAELRKREEELTQLNRELEDTNRGVLALYAELDEKADSLQKANELKT 218

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
           RFL++MSHE RTPLN+IL  S ++     G L  E  K+ +  I ++   L  L+N++LD
Sbjct: 219 RFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQ-VTFIQKAASGLSELVNDLLD 277

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMR 369
           L+++EAG+ E+  S+  + D+      ML+    Q  ++ +  +    +  +++DE  + 
Sbjct: 278 LAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEEPEGIGQMYSDEGKVA 337

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ N +SNA+KFT   G V V+     G     S+ D G GIA  +   +   F Q   
Sbjct: 338 QILRNFVSNALKFTEQ-GEVRVSA-MQRGHAVIFSVSDTGIGIAIADQERIFEDFVQIES 395

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +++   +G GLGLP+++ +    GG   + SKL +G    A +P
Sbjct: 396 SLQKQVKGTGLGLPLSRKLTELLGGSISVESKLGQGSTFTASIP 439



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  +   +  +  NA ++   GG V  +V     +   I I+D G GI       +   
Sbjct: 35  DQARLATAVSEIARNAFQYAG-GGTVEFSVAGEP-QELIIRIQDRGEGIP-----HL--- 84

Query: 424 FGQGSIAIKSAEQGVGLGLPI--AQSIMANHGGQFLIRSKLREGVEVIAI 471
                +         G+GL I  ++ +M      F + S+  +G  V+  
Sbjct: 85  ---AEVLAGRFTSDTGMGLGIMGSRRLMDF----FEMESQPGQGTTVVMS 127


>gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 849

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 12/238 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G ++++    +     E  + +   I  SG+ LL +IN+ILD 
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEALLVIINDILDY 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA R  L      L   + E  ++LQ +A+ K I++    D  L      D   +RQ
Sbjct: 398 SKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V+ NL+ NAVKFTA  G V + V             ++++D G GIA   +  V   F Q
Sbjct: 458 VLTNLIGNAVKFTAA-GHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIP 482
                    +G GLGL I + ++    G   + S+   G        LP        P
Sbjct: 517 IEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAADDEAAPP 574


>gi|332292416|ref|YP_004431025.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170502|gb|AEE19757.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 740

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 164/311 (52%), Gaps = 15/311 (4%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                ++   L  +++  + +   L  S  K  + +A+ ++L+   +         R  A
Sbjct: 304 DRNSRAMRLTLVLSIALCSILA-LLTLSLYKNNNLRAKANELL---QAKNVELVIARDNA 359

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ ++ K++FL++++HELRTP+ A+ G + ++  E       E  K+++  +  SG++LL
Sbjct: 360 EKASMVKAQFLSTITHELRTPMYAVTGLTHLLLSE----NPTEDQKKHLDSLKFSGEYLL 415

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           +LIN ILDL+++EA + E+ E+A ++   + + +  L   A++K  ++    DP++   +
Sbjct: 416 SLINNILDLNKLEANKVEVEETAFNIKKRIEDVLFALGKSARDKGNKLHIDFDPNIPTEL 475

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEI 417
             D   + QV++NL+ NA+KFT   G V V V   S        +  I+DNG GI++ + 
Sbjct: 476 LGDPLMISQVLINLVGNAIKFT-RDGDVWVRVQKISQGESDIKLHFEIEDNGEGISKKKQ 534

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            T+  +F QGS+AI     G GLGL I ++++     + L+ S L +G      L N  +
Sbjct: 535 KTIFQNFTQGSVAINRKFGGTGLGLSIVKNLLDLLNSEILLESTLGKGTTFKFDL-NYNL 593

Query: 478 LNFIPEDNHES 488
           +  +P + + +
Sbjct: 594 IKTLPGEANAN 604


>gi|320178565|gb|EFW53530.1| Sensor protein torS [Shigella boydii ATCC 9905]
          Length = 904

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTANQA 666


>gi|154503274|ref|ZP_02040334.1| hypothetical protein RUMGNA_01098 [Ruminococcus gnavus ATCC 29149]
 gi|153796268|gb|EDN78688.1| hypothetical protein RUMGNA_01098 [Ruminococcus gnavus ATCC 29149]
          Length = 442

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L   A  ++ V+ +    M+  A     + T  L +   ++      ++ +  EL    +
Sbjct: 144 LGAMARDTLPVIGVLAVVMMIFAWILGRWQTERLIRPINELDIEHPLENVVYEELRPLLT 203

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             D   K        +  F A++SHEL+TPL +I G++E+++   + P +      +   
Sbjct: 204 AMDRRNKEKAAVEDMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRPEDIPN---FSER 260

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I++  + L+ LI +I+ LS+++ G  E+ +  + L ++ RE I  L ++A  K++ +   
Sbjct: 261 IYKEAKRLITLIEDIIKLSKLDEGSVEIEKEEVDLYELSREIISRLSMQASMKHVHVSLS 320

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +P   +     + + ++I N+  NA+K+   GG V V VG T    + + + D G GI 
Sbjct: 321 GEP--VTYVGIRQILDEMIYNICENAIKYNVEGGSVSVWVGSTLNGPK-VQVNDTGIGIP 377

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +     +   F +   +      G GLGL I +     H  +  + S   +G  +  + 
Sbjct: 378 KEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGALLHNAKVSVESDTGKGTRMEILF 436


>gi|37675989|ref|NP_936385.1| sensor kinase VieS [Vibrio vulnificus YJ016]
 gi|37200529|dbj|BAC96355.1| probable sensor kinase VieS [Vibrio vulnificus YJ016]
          Length = 1243

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                 Y      +S              +   +  ++     +  A+    A+ RFLA+
Sbjct: 647 LQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIAAQHEAQSAVKARERFLAT 706

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPL A  G  +++   +     +E  KE +    +S  HL  L++E+LD S++E
Sbjct: 707 MSHELRTPLAATYGLLDLVATHS----TSERDKELVLRAKQSLNHLNLLVDEVLDYSKLE 762

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILN 374
           AG  ++  +   L+ ++ + +   + +A  K ++    I P SL     D+    Q++ N
Sbjct: 763 AGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFSLRWAMIDDLRFNQIVSN 822

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KFT   G + +T      R   ++IKD G G+ + ++  +   F Q   +I   
Sbjct: 823 LISNAIKFTEQ-GDITLTAQVVKER-LLLTIKDTGIGMTQEQLANIFKPFVQADDSITRQ 880

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             G GLGL I + ++   GG   + S L  G +V   LP T      PE
Sbjct: 881 FGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPLTPCEGAYPE 929


>gi|329851250|ref|ZP_08266007.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840096|gb|EGF89668.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 799

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 8/248 (3%)

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           + +     R +AE     K++FLA+MSHE+RTPL  ILG++ ++  +      ++    +
Sbjct: 410 SNAQLIAARHQAEAALEIKAQFLATMSHEIRTPLTTILGYAGLLGEQD---DLSQEAAAF 466

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I ++G+ LL LIN++LD+SR+EAG+  L++ A+++ ++ RE +   Q++A  +N+++
Sbjct: 467 VKRIGKAGRTLLALINDVLDVSRLEAGQVTLTQQAVNVHELARELVEQFQMQASTRNLKL 526

Query: 351 FQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIK 406
               D  L      D+  + QV+ NL+ NA KFT+  G + +++       G    + + 
Sbjct: 527 NLDYDEELPEWQLIDDTRLTQVLNNLVGNACKFTSD-GVISISMRAVENLAGTRMRVEVG 585

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D GPG+   +   +   F Q    I     G GLGL I   I+    G+  + S +  G 
Sbjct: 586 DPGPGLTTEQTGKLFKRFQQLDAGINRKHGGSGLGLAICAEIIKLMQGEIGVVSSVTAGS 645

Query: 467 EVIAILPN 474
                +P 
Sbjct: 646 TFWFEVPL 653


>gi|218704409|ref|YP_002411928.1| hybrid sensory histidine kinase TorS [Escherichia coli UMN026]
 gi|218431506|emb|CAR12384.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli UMN026]
          Length = 950

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 371 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 430

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 431 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 490

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 491 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 546

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 547 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTALMGDPRRIRQVI 606

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 607 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPTKLAEIFQPFVQVSGKR- 663

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 664 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 716


>gi|227524258|ref|ZP_03954307.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227088489|gb|EEI23801.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 498

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 115/269 (42%), Gaps = 7/269 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  +LI +        ++  +  + +   +  FLA  +HE+RTPL  I G  E I+    
Sbjct: 227 EIGELITDFNHMTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIK---Y 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             +  E   + I  +    Q L+ L+NE LD  +I +    L +   +   ++   +  L
Sbjct: 284 DVIPQEQRGKSIDLMSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQL 343

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +A E       +    L  ++AD     Q++ N+ +NA++FT   G + + +G     
Sbjct: 344 GSKASESKDRFEIQAPDDLP-IYADYDRFVQIVFNITNNAIQFTDS-GTITL-IGERGYN 400

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I IKD G G+ + +   +   + +   + +       GLGL I   ++  HGG+  +
Sbjct: 401 ETIIRIKDTGIGMTKEQQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISV 460

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487
            SK  +G     I+P+         +N++
Sbjct: 461 TSKPHKGTTFTVIIPDQTDAEKKAAENNK 489


>gi|116073625|ref|ZP_01470887.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
 gi|116068930|gb|EAU74682.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
          Length = 683

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 158/464 (34%), Gaps = 47/464 (10%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115
            L  A +    T      +W L+ L      L++ + V      +  +        +G  
Sbjct: 195 GLASAALTREVTVAVFISIWVLVILGAVFNALTITRPVKELLRGVRRIARGDFQTRIGLP 254

Query: 116 AIG----LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
             G    L      +               +A  +   S+ A                + 
Sbjct: 255 VGGELGELLDGFNAMASQLQAYDAANIEELTAAQVKQASLIATMADGAVLLDAQGQIVLA 314

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              + +              +          +   L             +          
Sbjct: 315 NPTARRLFRWEGRKLEGQDFLGELPELLSVELHSTLDAVLCNSADSNELRSSAGEPPRTL 374

Query: 232 KSLSDETRK-----------------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +    R                  R  E N A+SRF++++SHELRTPL  I  + E +
Sbjct: 375 RFVFQAVRDASGESLKGIAVTIQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETL 434

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                  L+ +  KE++G  +     L  L+N++LDLSR+E+GR  +    +SL   + +
Sbjct: 435 HD-LGDQLSADEQKEFLGVANDETDRLTRLVNDVLDLSRLESGRV-VQFEPVSLRPAMEQ 492

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +   +L A+++ +++  ++ P L  V  +   + QV+ NL+ NA+KF+  GG + +   
Sbjct: 493 TLRTYRLNAEDRQVDLRLEVAPDLPEVLGNWDLILQVLDNLVGNALKFSRPGGPLMLRAY 552

Query: 395 WTSGR-----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
                                          I I D G GI+E +   +   F +   A+
Sbjct: 553 AWPDSCEVKDQAIVGSEGPTCALTSPLPKLRIEIADTGCGISEADQQRIFDRFYRVENAV 612

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   G GLGL I + I+  HG Q  + S+   G      LP  
Sbjct: 613 HTEV-GTGLGLSIVRGIIEKHGSQVFMVSEPDVGTTFWFDLPLA 655


>gi|158320762|ref|YP_001513269.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
 gi|158140961|gb|ABW19273.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
          Length = 457

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 9/325 (2%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214
              +L        +  + A+  + I+   ++ +++        +  +     L +  ++ 
Sbjct: 131 VGAVLLSTSLAHCYGEIGAIRDKLILISTLVLLAIVATTLRVANSISEPIKRLTQV-MQN 189

Query: 215 LSCQAEKDDLIAELEVAKSLSDET----RKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            +     + +I   E   S   +       +       +  F+ ++SHEL+TPL+++   
Sbjct: 190 AAHGKLNEKVIISGENEISQLAKAYNFMNTKLSHIEEQRREFVGNVSHELKTPLSSMKLL 249

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           SE +       ++   YKE++ DI      L  +I+ +L+L  ++  +  +      L  
Sbjct: 250 SESLL--IQPEVDVSIYKEFLKDIDSEINRLTKIIDSLLNLVDMDEEKLSIDYKLTYLNY 307

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++ + +  ++  A EKNIEI       +  ++ D+  + Q + N++ NAVK+T   G++ 
Sbjct: 308 LIEKVVNSIKPLAHEKNIEIIFGQWEKI-QIYVDQDKIHQALTNIIYNAVKYTENNGKIE 366

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           + + +  G    I I D G GIAE  IP +   F +   A      G GLGL I+Q +++
Sbjct: 367 IGL-FKKGNYAVIKISDTGIGIAEENIPHLFERFYRVDSARSRETGGTGLGLTISQQVIS 425

Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475
            H G   + S + EG      LP  
Sbjct: 426 LHQGTIEVESVVNEGTTFYVKLPIE 450


>gi|302390527|ref|YP_003826348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201155|gb|ADL08725.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 463

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 12/318 (3%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            L +  + +     +      +    ++   ++  L   +   +       K    +   
Sbjct: 157 SLEFVFYRTLSSYSLFSVAFGLGLALLIGALVSRRLTEPIKQLSAAVKRFSKGERDVKIT 216

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               D+L +  E   +++++ RK  E     +    A ++HELRTP+  I G  E I+  
Sbjct: 217 LETGDELSSLAEDFNAMAEKIRKSEE----LRRNLTADIAHELRTPIAIIQGTLESIQEG 272

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            + P         +  +      +  LI ++ DLS +EAG+ EL+   I   ++  + I 
Sbjct: 273 VLEPTPA-----LMLSLQEEVSRMTRLIKDLSDLSLVEAGKLELNRIKIFPAELAGKFIH 327

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +  A+ K I        +L +V+AD   + Q+I NLLSNA+K T+  GR+ ++    +
Sbjct: 328 -FKAEAEAKGIRFDINFPRNLPAVYADPTRLVQIITNLLSNALKHTSS-GRIELSAE-KA 384

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             G    ++D G GI + ++P +   F +   +      G GLGL I + ++  HGG+  
Sbjct: 385 EGGVVFKVQDTGSGIKKEDLPYIFERFYRAEKSRSRKTGGTGLGLAITKGLVEAHGGRIW 444

Query: 458 IRSKLREGVEVIAILPNT 475
           + S+  EG      +P+ 
Sbjct: 445 VESREGEGSVFSFFIPSA 462


>gi|309789879|ref|ZP_07684457.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228086|gb|EFO81736.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 385

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              ++   +A++SHELRTPL ++    E ++         +     +  + +    +  L
Sbjct: 153 LERSRRDLVANVSHELRTPLASLKLLVETVQSSP----PPDVAHRMLEQMAQEIDSVTQL 208

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++E+ DL++IE+GR  L  + + +  ++   +  ++ +A  K + +  ++     +V  D
Sbjct: 209 VDELHDLAQIESGRVSLKLAPLPIGPVIERALERMRPQADRKGLTLGAEVPNGAQAVLMD 268

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIP 418
              + Q++LNLL NA+KFTA GG V + V               +S+ D G GI   ++P
Sbjct: 269 PNRVGQILLNLLHNAIKFTAEGGSVQIRVRLVGEDAGQAGPWLLVSVCDTGVGIPATDLP 328

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +   A      G GLGL IA+ ++  HGG+    S    G      LP  
Sbjct: 329 RIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRLWAESVEGRGSTFAFTLPVA 385


>gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 1149

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 10/324 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
                    AV     P  +  +  ++     L   L             I   L  +  
Sbjct: 223 TTGLAARLAAVVGDAAPARLPGALFSMPGEEALAHPLVRSDTVEGVLVMGINPRLPATAP 282

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILG 269
                +     + A L  A++  ++ R+RAE   E + AK+ F +++SHE RTPL  ILG
Sbjct: 283 YQDFFEVLAATVGAALSAARTQHEQ-RRRAESLAELDRAKTVFFSNISHEFRTPLTLILG 341

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
             +    + +   +    +  +    RS   LL L+N +LD+SR+EAG  + +   + L 
Sbjct: 342 PVQ----QALADEDRPARRSQLELAERSALRLLKLVNTLLDVSRVEAGGLKGTFEPVDLS 397

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            I  E   + +       + +     P    V  D +   +++LNL+SNA+KFT  GG V
Sbjct: 398 RITAELAAIFRSSFDLAGLTLEVDCPPLPEPVHIDREMWEKIVLNLISNALKFTFTGG-V 456

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V +    G    +++ D G GI   E+P +   F +   A   + +G G+GL + + ++
Sbjct: 457 TVRMAAV-GHHARLTVSDTGSGIPREELPHLFERFHRVRGARSRSYEGSGVGLALVKDLV 515

Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473
             H G   + S    G E    +P
Sbjct: 516 ELHSGTIAVTSVPARGTEFTVEIP 539


>gi|156935733|ref|YP_001439649.1| aerobic respiration control sensor protein ArcB [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533987|gb|ABU78813.1| hypothetical protein ESA_03603 [Cronobacter sakazakii ATCC BAA-894]
          Length = 779

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +    +   ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL----SAEQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPS 357
             L N+ N+I+D+ +IE  + +L    +     + +   +  L+AQ+K +    +   P 
Sbjct: 329 VTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRFVMEPVRPV 388

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +         ++D+G GI + E 
Sbjct: 389 PHKVLTDGTRLRQILWNLISNAVKFTQQ-GQVTVRVSYNENEQLRFEVEDSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + SK  +G   +  +   R
Sbjct: 448 DKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSSKPGQGSTFVLTVQAPR 507

Query: 477 VLNFIPE 483
           V   + +
Sbjct: 508 VAEEVED 514


>gi|310817566|ref|YP_003949924.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390638|gb|ADO68097.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 510

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 146/343 (42%), Gaps = 14/343 (4%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLF 208
           ++   +       +     P ++     + +       S++ +  +            L 
Sbjct: 42  ALKLAAQHRPDLVILDVQLPDILGYEVASRLRASPDTASISVLHTSATFVTPDKRVQGLD 101

Query: 209 KSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAE---EENLAKSRFLASMSHELRT 262
                 L+   E  +LIA +      +    E R RA+     +  K  FLA ++HELR 
Sbjct: 102 AGADGYLTQPFEPAELIATVRSLLRLRHAERELRVRADQLTAADRRKDEFLAMLAHELRN 161

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL AI+    ++E +    +     +     I R   HL  L++++LD+SRI  G+ EL 
Sbjct: 162 PLAAIMTAIGILERKPTDDVKEARMR---AIIQRQTHHLARLVDDLLDVSRITRGKVELR 218

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
              +  + ++++ + +++  A+ + + +   +  +   V  D   + Q+ +NLL NA K+
Sbjct: 219 RERMDTLSVLQQVLSLIRPTAEGRGLSLESHLPGTPLWVEGDSTRLEQIFMNLLDNAAKY 278

Query: 383 TAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           T  GG + V        G     + I+D G GI   ++P +   F Q   +++ +  G+G
Sbjct: 279 TDAGGHITVHASQEGVDGSAQVVVRIRDTGIGIPSHKLPDIFELFAQADESLERSRGGLG 338

Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
           +GL + ++++  HGG     S    +G E +  LP    L+  
Sbjct: 339 IGLTLVRNLVELHGGTIGATSDGPGQGSEFVVKLPVAPHLSPP 381


>gi|302392660|ref|YP_003828480.1| integral membrane sensor signal transduction histidine kinase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204737|gb|ADL13415.1| integral membrane sensor signal transduction histidine kinase
           [Acetohalobium arabaticum DSM 5501]
          Length = 471

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 10/308 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              + +      + S+ V +     ML                   K +      D+L  
Sbjct: 171 LLILSITSIIGILSSIVVGNYIAKKMLRPIGEITATAQKITINDLDKRIDTSGADDELKK 230

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                 ++ D    R +     + +F++  SHELRTP++ I G+ +++  +  G  + E 
Sbjct: 231 LALTFNNMID----RLQASIEKQKQFVSDASHELRTPISVIQGYIDLL--DRWGKEDKEV 284

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E I  I      +  L+ ++L L+R + G+Y+       L +++ E     +L   E 
Sbjct: 285 LEEAIEAIQAETTSMKKLLEQLLFLARSDKGQYKFEHKTFDLSELIAEVYQEFELIDDEH 344

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISI 405
            I + Q        +  D K ++Q++  ++ N++K+T  GGR+ +T           I I
Sbjct: 345 EITLAQN---DQVEIRGDAKAIKQMLRIIIDNSIKYTESGGRITITSQQRREEEQVRIVI 401

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           KD G GI + E+  +   F +   +  S   G GLGL IA+ I+ +  G+    S+L +G
Sbjct: 402 KDTGRGIGKEELDRIFDRFYRVDESRTSKTGGAGLGLSIAKWIVESQQGRIEANSELNKG 461

Query: 466 VEVIAILP 473
            E+I  LP
Sbjct: 462 TEIIITLP 469


>gi|323342106|ref|ZP_08082339.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464531|gb|EFY09724.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 403

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 5/229 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E    + RF+A  SHELRTP+ +I G  E++        + ET + ++  I +    L +
Sbjct: 177 EGEKMQKRFIADASHELRTPIASIKGMVEILNRPEFD--DTETLEAFLKQIEKENNRLDH 234

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           ++ ++L  SR+++    L ++  +L       I   +    + NI++      ++ +V+A
Sbjct: 235 IVEDLLLQSRLKSNTVYLEKTVFNLKQFFDGLIYERRQELHQANIKVVLNCPSNI-TVYA 293

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + QV LNL +NA+ +    GR+ +    T     +I   DNG G+    IP +   
Sbjct: 294 DQFRLSQVFLNLFNNAINYA-ENGRIKIQCD-TDEEYVHIDFMDNGKGMEPDLIPHIFER 351

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +G         G GLGL I++SI+  HGG   + SK+ +G      L
Sbjct: 352 FYRGEKDRSRENGGSGLGLAISKSIVEAHGGTINVTSKIDKGTTFTIKL 400


>gi|254458067|ref|ZP_05071494.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD
            1]
 gi|207085460|gb|EDZ62745.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD
            1]
          Length = 1168

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 4/247 (1%)

Query: 230  VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             AK   D+     E+ +  KS FLA+MSHELRTPLN+I+  S+++       L++    +
Sbjct: 772  QAKEDLDKRADDLEKASKYKSEFLANMSHELRTPLNSIILLSKLLTQNKKETLSDSDVSK 831

Query: 290  YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
                IH++G  LL LIN+ILDLS+IE+G  EL+ES     +I  E   +    A+EKN+ 
Sbjct: 832  -TSVIHKAGNDLLLLINDILDLSKIESGNMELNESEFDTSEIREEIEGLFSEVAKEKNLN 890

Query: 350  IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
               +   + S +  D+  + Q+I NLLSNA KFT   G V ++V +   R     + D G
Sbjct: 891  FEVRDSFNRSFI-VDKTKLLQIIKNLLSNAFKFT-KSGEVSLSV-FKKNRDIVFEVSDTG 947

Query: 410  PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
             GI E ++  +  +F Q   +I     G GLGL I+++ +   GG+  + SK   G   +
Sbjct: 948  IGIPEAKLALIFEAFKQVDGSISREYGGTGLGLSISKTFINLMGGRIEVDSKEGIGSSFL 1007

Query: 470  AILPNTR 476
             ILP  +
Sbjct: 1008 VILPIEK 1014


>gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 849

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 12/238 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G ++++    +     E  + +   I  SG+ LL +IN+ILD 
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEALLVIINDILDY 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA R  L      L   + E  ++LQ +A+ K I++    D  L      D   +RQ
Sbjct: 398 SKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V+ NL+ NAVKFTA  G V + V             ++++D G GIA   +  V   F Q
Sbjct: 458 VLTNLIGNAVKFTAA-GHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIP 482
                    +G GLGL I + ++    G   + S+   G        LP        P
Sbjct: 517 IEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAADDEAAPP 574


>gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 7/230 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N  K+  +A++SHELRTPL +ILGFSE+++   +    N   + Y+  I    + L  
Sbjct: 418 EINRLKTELVATVSHELRTPLTSILGFSELLKSRQL---ENTKRERYLDMIASETKRLER 474

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++LD+ ++EAG          +  +      +L++ A       F         V  
Sbjct: 475 LVSDLLDVQKMEAGMSVPD---FKVESLYDLLSDLLEIHAGSTEHHFFHFDCDESLFVAG 531

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   +RQV  N+L+NA+K++  GG V V V         I I D G G++E +   +   
Sbjct: 532 DPAQLRQVFSNILNNAIKYSPRGGNVTVDVTC-EDDTIQIGITDEGLGLSEEDAARIFDK 590

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F + +        G GLGL I + I+  HGG   ++S+L EG  +I  LP
Sbjct: 591 FYRSASEESKRIGGTGLGLAICKEIVQLHGGTISVQSQLGEGTTMIVELP 640


>gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 9]
          Length = 766

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 357 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 416

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 417 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 472

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 473 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 532

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 533 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 591

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 592 GKVEAASAGKNRGTTFAITLPA 613


>gi|119486137|ref|ZP_01620197.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119456628|gb|EAW37757.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 615

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 18/240 (7%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+ SHELRTPLN I+GF +++    +   + E  +E++ + HR+  HLLNLIN++
Sbjct: 356 KSEFLANTSHELRTPLNGIIGFLKLVIDGMVD--DPEEEREFVQEGHRAALHLLNLINDV 413

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK---IDPSLSSVWADE 365
           LD+++IEAG+ E+  + + + ++++E     + + Q+K + +        P L  V+A+ 
Sbjct: 414 LDIAKIEAGKMEIDLALVKVSELLKEVEQFTKTQVQQKGLNLSIHEHSYSPDLI-VYANY 472

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEG 415
           + + QV+LNL+ NA+KFT  GG V++++G  +                 + D G G+   
Sbjct: 473 QRLLQVMLNLVGNAIKFTHEGG-VNISLGVLNQKVILQNQEFPGFVEFRVTDTGIGVPLE 531

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474
           +   +  +F Q          G GLGL I+Q ++   GG     S     G  V   +P 
Sbjct: 532 KQDRLFKAFSQVDTGYTRQYGGTGLGLVISQKLVQAMGGSVKFYSLGEGLGSTVTFTVPL 591


>gi|121997145|ref|YP_001001932.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588550|gb|ABM61130.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 657

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 130/261 (49%), Gaps = 14/261 (5%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++ R +A   +  ++ FLA++SH+LRTPLNA++GF+ +++   +    +   + Y+
Sbjct: 267 RMELEQARAQA---DRDRTTFLAAVSHDLRTPLNAVVGFTGLLQDTEL----DAEQRRYV 319

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                + Q LL L++ +L LSR+EAG  +L  +   L   + + + +L+  A EK + + 
Sbjct: 320 ELCRTASQTLLGLVDTLLSLSRLEAGEMQLECAPFDLRAFLEDEVGLLEALAAEKGLSLS 379

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             IDP++   V  D     QV+ NL +NA+KFT  G  V             ++++D GP
Sbjct: 380 LHIDPAVPGWVEGDAVRFGQVLYNLANNAIKFTEQGSVVITVEPADGDGLLRVAVRDTGP 439

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI+E +   +  +F QG       ++G GLGL I + ++   GG   ++S    G     
Sbjct: 440 GISEADQKRIFRAFTQGGDVF-RRQEGSGLGLTICKELVRLMGGDLGLKSAPGAGSTFQF 498

Query: 471 I--LPNTRVLNFIPEDNHEST 489
              LP    +     D  E+T
Sbjct: 499 TARLPA---VEPSAADGAEAT 516


>gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1336

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 19/319 (5%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK-SLSDETRKRAEEENLAKS 250
            ++     + ++  Y L+          A +  L  E E  +    ++   R EE N  K 
Sbjct: 770  LIVHPPFWLSWWAYLLYVIMGISALLFARRLTLKREREKFRMQQIEQEAARKEEINQMKF 829

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            RF  ++SHELRTPL  I+   E +  +     ++E+ +  +  ++R+ Q LL L+N++LD
Sbjct: 830  RFFTNISHELRTPLTLIIAPLEDLLKK---TADDESKRTVLQLMYRNAQRLLMLVNQLLD 886

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
              + E   + LS S   ++  + E        A +K+I           S+  D   + +
Sbjct: 887  FRKGEMSGHHLSLSEGDIVGYIHEVCNSFLSMADKKHIRFSFFSGVDAFSMAFDADKIGK 946

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGS 428
            V++NLLSNA KFT  GGRV V + +  G        + D G GI +GE   +   F Q  
Sbjct: 947  VVMNLLSNAFKFTPEGGRVTVMLEYVEGDSNVFEIKVSDTGIGIPDGEKEHIFERFYQTE 1006

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV----------- 477
               +    G G+GL + +  +  H G   +   +  G   +  LP   V           
Sbjct: 1007 HKGQDEMTGSGIGLSLVRDFVRLHDGTVEVFDNIGTGAVFVVCLPVRHVDVKAELPKPVC 1066

Query: 478  --LNFIPEDNHESTQYKCY 494
              ++   E    ST  K +
Sbjct: 1067 VPMDEGQETAMASTDRKDF 1085


>gi|323976628|gb|EGB71716.1| TMAO reductase sytem sensor TorS [Escherichia coli TW10509]
          Length = 904

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDINSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVVEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLVTEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPSKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|23501205|ref|NP_697332.1| sensor histidine kinase [Brucella suis 1330]
 gi|161618279|ref|YP_001592166.1| phosphate regulon sensor protein phoR [Brucella canis ATCC 23365]
 gi|254703666|ref|ZP_05165494.1| phosphate regulon sensor protein phoR [Brucella suis bv. 3 str.
           686]
 gi|260567081|ref|ZP_05837551.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261754306|ref|ZP_05998015.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|23347085|gb|AAN29247.1| sensor histidine kinase, putative [Brucella suis 1330]
 gi|161335090|gb|ABX61395.1| Phosphate regulon sensor protein phoR [Brucella canis ATCC 23365]
 gi|260156599|gb|EEW91679.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261744059|gb|EEY31985.1| histidine kinase [Brucella suis bv. 3 str. 686]
          Length = 438

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|170760827|ref|YP_001788079.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407816|gb|ACA56227.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 702

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVWETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L  G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGNGTTFTVKI 670


>gi|168183173|ref|ZP_02617837.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237796198|ref|YP_002863750.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673684|gb|EDT85645.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263232|gb|ACQ54265.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 702

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ N  K  F   +SHELRTPL  I    + +  +      N    + +  I+++   
Sbjct: 441 ELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTAR 499

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   L+     ++      +  +   A  KNI +          
Sbjct: 500 LLKLINNILDISKAEAGFLTLNNEYFDIVWETENIVNSITNYANSKNINLIFDTTKEEEE 559

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           VW D+    +++LNLLSNAVKFT     ++VT+       + I +KD G GI + +I  +
Sbjct: 560 VWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLI-VKDEGRGIPKEKIDCI 618

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++  + +G G+GL + + I+    G+  + S L  G      +
Sbjct: 619 FNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEIKVYSILGNGTTFTVKI 670


>gi|26107413|gb|AAN79596.1|AE016758_200 Sensor protein torS [Escherichia coli CFT073]
          Length = 576

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 18/352 (5%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
           +L  +S+ AL   +          P+     + Q ++   +            L     +
Sbjct: 1   MLGLVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRL 60

Query: 204 TYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                 S   +   +    A+     AEL+       + R  AE+ + AKS FLA+MSHE
Sbjct: 61  MDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHE 120

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG-- 317
           +RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IEAG  
Sbjct: 121 IRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIEAGGK 176

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
              +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI NLL
Sbjct: 177 NVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVITNLL 236

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S        
Sbjct: 237 SNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR----G 290

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 291 GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 342


>gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
 gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
          Length = 769

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei BCC215]
 gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
 gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
          Length = 771

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|121296536|gb|ABM53768.1| hybrid two-component regulatory protein [Stenotrophomonas
           maltophilia]
          Length = 702

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 157/406 (38%), Gaps = 48/406 (11%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
             I L     ++ L   ++    +     V  +            + L+         P 
Sbjct: 33  LGIVLTGLTLSVLLFSWLLARPGRSDPRRVAGML---------ADYGLIAAGMVQMGEPL 83

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
                    + +   +   + ++            V  L+T    +   L   L   LA 
Sbjct: 84  SWVYIVVMWVTVGNGMRYGNKYLYAAVGMALVSFGVTVLATGYWQANARLGFGLWLGLAA 143

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +F  +   L                            DE R+     + AKSRFLA+
Sbjct: 144 VPLYFASLLRQLTH------------------------AMDEARR----ASEAKSRFLAN 175

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE RTPLN + G +EV+   T+    +E  +E +  I  S + LL L+ E+LD+S IE
Sbjct: 176 MSHEFRTPLNGLSGMTEVLATTTL----DEEQRECVNTIQASSRSLLALVEEVLDISAIE 231

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374
           AG+  +     SL D+V+   ++L  +A+ K+++   K+   +  +   D   +RQ++LN
Sbjct: 232 AGKLRVVAEDFSLDDVVQSIGLILMPQARLKHLDYQVKVAAGVPRLLRGDLGHLRQILLN 291

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           L  NAVKFT   GR+ + V      G         I D G G+       +  +F Q  +
Sbjct: 292 LAGNAVKFT-EHGRIEIRVSQVGEEGHGQVRLRFDILDTGIGVGPEMRSRLFQAFEQADV 350

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++    +G GLG  I++ ++   GG+        +G      LP  
Sbjct: 351 SLGRRHEGSGLGTSISRGLVEAMGGRIGYAENPPQGSCFWFELPFA 396


>gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
 gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
          Length = 396

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 5/277 (1%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F       +   + +    ++    L+  LE             +E +  KS+FLA++SH
Sbjct: 120 FLGGRREQISAESDERSLLRSYNQKLVERLEQQVRELSAANAALQELDTLKSQFLATLSH 179

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL +++G+ E+ +   +G L+    KE +G + RS   L   +N +L    + +  
Sbjct: 180 ELRTPLTSLIGYIELFDRGMLGTLSTP-QKEAMGVMRRSCTILSQQLNNLLYFQELRSRS 238

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
           + L    I++ D++R+ +I+ + RA +  I            + AD  G+ Q++ NL+ N
Sbjct: 239 FHLR--PINMRDLLRQSLILFKERADQAGIRFEVVGSEIAP-ILADTSGIEQLVRNLIDN 295

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           A+KFT  GG V V V         + ++DNG GI       +   F +   ++ S + G 
Sbjct: 296 AIKFTQAGGWVRV-VFQDEPSRLIMRVEDNGIGIPSEYHERIFLPFYRVDSSLASGQTGS 354

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           GLGL I Q ++  HGGQ  +RS   +G     +LP  
Sbjct: 355 GLGLAIVQHVINAHGGQITVRSIPGKGSVFTVVLPRA 391


>gi|221198738|ref|ZP_03571783.1| histidine kinase [Burkholderia multivorans CGD2M]
 gi|221205000|ref|ZP_03578016.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221174791|gb|EEE07222.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221181189|gb|EEE13591.1| histidine kinase [Burkholderia multivorans CGD2M]
          Length = 759

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 8/270 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E      +L+ A +  D       + N AK +FLA + HELR PL  I    E++    
Sbjct: 329 TEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSRE 388

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                NE     I  I R   H++ LI+++LD+SRI  G+ EL + A+ L DIV   + +
Sbjct: 389 GHATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEV 443

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                +++   +   ID  +     D   + QV+ NLL+NA K+TA GG + + V    G
Sbjct: 444 ASPLLEQRRHRLHVDIDADV-RCHGDPVRLSQVVANLLTNAAKYTAPGGDIGLHVARGDG 502

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D+G GI    + ++   F +        + G+G+GL + +S +  HGG    
Sbjct: 503 DTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGLALVKSFVMLHGGTVRA 562

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDNHE 487
            S     G      LP  R    +  D  E
Sbjct: 563 DSAGPGLGSTFTVTLPEYR-PPAVEADARE 591


>gi|229023488|ref|ZP_04179984.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
 gi|228737756|gb|EEL88256.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
          Length = 438

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 143/272 (52%), Gaps = 10/272 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I +   +     L  Q ++D      E+A SL+     + E+    K+ F+AS+SHE+RT
Sbjct: 177 IIHASSQIAEGTLKEQIKEDYPGELGELAHSLNYMA-DKIEKAEQMKNEFIASISHEIRT 235

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  I G+SE ++  T+  L +E  K+ +G I      L++L+ E+LD SR+++  + L 
Sbjct: 236 PLTGIKGWSETLK--TVDHLTDEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLY 293

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           +  + L DI+ E I  L  +++EK I++   ++     +  D   ++QV LN++ NA+K+
Sbjct: 294 KQKVQLYDILEETIWQLTPKSEEKQIQLVANLE--RVELVGDRNRLKQVFLNIIHNAIKY 351

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           +   G +++     S     I + D G GIA+  +P +  SF Q    I S  +G G+GL
Sbjct: 352 SNEKGTIYIEAA-KSEGKAVIKVTDQGIGIAKEHLPFIEQSFYQ----INSHIEGAGIGL 406

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I + ++  HGG   I S+ R G  ++  LP 
Sbjct: 407 AIVKKMVELHGGTLSITSRERVGTTILIKLPL 438


>gi|221210646|ref|ZP_03583626.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
 gi|221169602|gb|EEE02069.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
          Length = 1017

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 144/405 (35%), Gaps = 17/405 (4%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
             A    L  +  +  +        R++         +  + + L         ++ +  
Sbjct: 346 TIAIMWVLLVRFHHRVLTGVYARSQRVFDSESLCRSVIEMSPIGLGLISRADGRFMLVSP 405

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
                +A                            + ++S                    
Sbjct: 406 VLAERVARLGCDCGTLSAQILAQYRAGASNTPFQIELVLSDAQAAAGADAPPLHLEVIAR 465

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              Y      +  +     K  L+ +        +E  + A+  N AKS FLA+MSHE+R
Sbjct: 466 DARYQASDVLIVAVVDVTAKRQLVQK-------LEEAVRAADSANAAKSSFLAAMSHEIR 518

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG  E++E   +        +  +  +  +   LL L++ ILD +++EAG   +
Sbjct: 519 TPLNVILGNLELLERSVLDLP----QRSRVQTLRNAASGLLELVSGILDFTKVEAGAMPV 574

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
                  I ++   +      A+ K + +F +I  S S  +  D   + QV  NLLSNA+
Sbjct: 575 ESIEFDAIGVIARELGAYAPVAKAKGLPLFCEIAASASQRMRGDPTRLAQVFGNLLSNAI 634

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V   V    G        I+I+D G GI   ++  +  +F Q    I     
Sbjct: 635 KFT-AHGHVTARVRAVRGECGTAELAIAIEDTGIGIGSADLHKLFRAFSQVDATIARRYG 693

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL +   ++   GG+  + S    G      LP    +  I
Sbjct: 694 GTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFTVRLPLGLDVEPI 738


>gi|160933135|ref|ZP_02080524.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753]
 gi|156868209|gb|EDO61581.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753]
          Length = 476

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 148/319 (46%), Gaps = 13/319 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMH--VLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
            L  A    F  V + L    ++     + +      +   L   + +   + + + K+ 
Sbjct: 158 SLESADRKIFMSVSLLLLVGCMVIFFVVLSNTYFIRSIVKPLGKISAVARRIAQGDFKVR 217

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             ++  D++    +    ++ E           K+ F++S+SHELRTPL AI G++E ++
Sbjct: 218 IRKSHDDEIGDLCDTINDMAQE----LGASEKMKNDFISSVSHELRTPLTAIKGWAETMK 273

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +   GP +  T ++ +  I R  + L  ++ E+LD SR++     L    I L+  + E 
Sbjct: 274 MT--GPADAVTMEKGMSIIVRETERLSGIVEELLDFSRMQNKAMVLMMDKIDLLAELDEA 331

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + M + RA  +N  +  +   S+S V AD+  MRQV +N++ NA+K+T   G V + V  
Sbjct: 332 VYMYRERAISENKHLDFEEPESISPVLADKNRMRQVFVNVIDNALKYTPEDGMVSIRV-Q 390

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +  +I I DNG GI    +P V   F + +   +    G G+GL +A  IM  H G 
Sbjct: 391 EDEKFIHIYIVDNGCGIPAEHLPRVKDKFYKANQTQR----GSGIGLAVADEIMTLHSGS 446

Query: 456 FLIRSKLREGVEVIAILPN 474
             I S+   G  VI  +P 
Sbjct: 447 LQIESEEGVGTTVIISIPK 465


>gi|144900838|emb|CAM77702.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 806

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 162/402 (40%), Gaps = 12/402 (2%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           ++ L   A    LG +++ +   +  +         G++                    +
Sbjct: 71  VMMLDGDALAFFLGDRLLIALWCLAVMIALARPASYGRVVALTYVHQYVFFTLNALIFNH 130

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             + +    L+ L   AL  F LP +   S      A     +    +     A +    
Sbjct: 131 PVLLRHGGALMPLIAIALFMF-LPGSFRASALLSAFAAGISLLFWGGLRPQPEALLDLGI 189

Query: 197 LSFFTYITYHLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           +   T + Y +           Q E+   I           + ++ AE    AK+ FLA 
Sbjct: 190 IFMLTVVAYVVGGLARSQSGRMQREEYLHIERERQTNHNLMQAKEAAEAGARAKADFLAV 249

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTP+N +LG   ++    +   +    +  +     S + LL ++++ILDLS++E
Sbjct: 250 MSHEIRTPMNGVLGMVRLVLESPLAEND----RSRLETACHSAEGLLTILDDILDLSKLE 305

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           +G +    +   L  ++   I ++ +RA EK + +   + P +   +  D   +RQ++ N
Sbjct: 306 SGSFRFHHAPFQLRPLLAGVIALMDVRAAEKGLTLTVDVAPDIPDWLDGDGGRLRQILFN 365

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           L+ NAVKFT  GG V +T           G   S+ D GPGIAE ++  +   F Q   +
Sbjct: 366 LIGNAVKFTQAGG-VTITACRRDDASDRVGVEFSVIDTGPGIAESQLSRLFQPFSQADAS 424

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           I     G GLGL I + ++   GG   + +   +G      L
Sbjct: 425 ISRQFGGTGLGLVICKRLVEGLGGSIGVDTPPGKGSRFFFRL 466


>gi|329960004|ref|ZP_08298500.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328533138|gb|EGF59907.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 746

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 122/259 (47%), Gaps = 12/259 (4%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
                 + E     + E  ++AE     K  FLA+MSHE+RTPLNAI+GFS ++  +   
Sbjct: 499 NIHAFKKREQELEEARELAEKAE----LKESFLANMSHEIRTPLNAIVGFSTILASDE-- 552

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L  +  +E+I  I+++ + LL LIN+ILDLSR+E+G+         + +++    +  Q
Sbjct: 553 ELLADERREFIQTINQNNELLLKLINDILDLSRLESGQMSFIIEKCRVKELIEGIYLTQQ 612

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-R 399
           +    +     +        V  D+  + QV+ N + NA KFT   G + +   +     
Sbjct: 613 MLIPSQLEFRKEAKAGIPLEVDVDKNRLVQVVTNFVGNACKFTKE-GSITIGYDYHPETE 671

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I ++D G GI   E   + + F +         +G GLGL I QSI+    G+  + 
Sbjct: 672 EAAIYVEDTGVGIDPAEQKIIFSRFYK----HNEFAKGSGLGLSICQSIVERLNGRIELW 727

Query: 460 SKLREGVEVIAILPNTRVL 478
           S+  +G     +LP   +L
Sbjct: 728 SEKGKGSRFTIMLPCKAIL 746


>gi|260754346|ref|ZP_05866694.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260757565|ref|ZP_05869913.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260761390|ref|ZP_05873733.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883371|ref|ZP_05894985.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
 gi|260667883|gb|EEX54823.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260671822|gb|EEX58643.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674454|gb|EEX61275.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260872899|gb|EEX79968.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
          Length = 532

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 24  AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 83

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 84  GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 140

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 141 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 200

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 201 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|189458614|emb|CAP62400.1| hypothetical protein [Angiococcus disciformis]
          Length = 508

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 15/352 (4%)

Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM- 192
            E              ++           V     P +        +  +    S+A + 
Sbjct: 26  LEMAGFRVLEAATGMGALLMAEQHRPDVIVLDVKLPDISGYEVCERLRKNPGTASMAVLH 85

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEE---N 246
            +            L       L+   E  +LIA ++     +      R RAEE    +
Sbjct: 86  TSATFVTSDKKVRGLEGGADAYLTQPFEAAELIATVKSLLRLRHAEQVARLRAEELAEMD 145

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K  FLA ++HELR PL AI+    ++E +   P ++       G I R   HL  L++
Sbjct: 146 RRKDEFLAMLAHELRNPLAAIMTAIGILERK---PTDDAKETRMRGIIQRQTNHLARLVD 202

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++LD+SRI   + EL  S + L+D++R+ + + +  A+ + + +   + P    V AD  
Sbjct: 203 DLLDVSRITRDKVELRTSKLDLLDVLRQVLQVARPIAESRGLGLEVSMPPGPLWVTADAT 262

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            + QV  NLL NA K+T  GG + V    VG        + +KD G GI    +P +   
Sbjct: 263 RLEQVFTNLLDNAAKYT-DGGHILVRIEQVGVDGSAKAVVRVKDTGIGIPADVLPYIFDL 321

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           F Q   +++ +  G+G+GL + + ++  HGG     S+    G E +  LP 
Sbjct: 322 FAQADTSLERSRGGLGIGLTLVRKLVQMHGGDVQAHSEGPGRGSEFVVKLPL 373


>gi|62289544|ref|YP_221337.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82699473|ref|YP_414047.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023801|ref|YP_001934569.1| sensor histidine kinase [Brucella abortus S19]
 gi|237815042|ref|ZP_04594040.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|254688862|ref|ZP_05152116.1| sensor histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|254696993|ref|ZP_05158821.1| sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729894|ref|ZP_05188472.1| sensor histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|256257110|ref|ZP_05462646.1| sensor histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260545699|ref|ZP_05821440.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297247957|ref|ZP_06931675.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
 gi|62195676|gb|AAX73976.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82615574|emb|CAJ10557.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189019373|gb|ACD72095.1| sensor histidine kinase [Brucella abortus S19]
 gi|237789879|gb|EEP64089.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|260097106|gb|EEW80981.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297175126|gb|EFH34473.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
          Length = 609

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|221211939|ref|ZP_03584917.1| histidine kinase [Burkholderia multivorans CGD1]
 gi|221168024|gb|EEE00493.1| histidine kinase [Burkholderia multivorans CGD1]
          Length = 759

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 8/270 (2%)

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            E      +L+ A +  D       + N AK +FLA + HELR PL  I    E++    
Sbjct: 329 TEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSRE 388

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                NE     I  I R   H++ LI+++LD+SRI  G+ EL + A+ L DIV   + +
Sbjct: 389 GHATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEV 443

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
                +++   +   ID  +     D   + QV+ NLL+NA K+TA GG + + V    G
Sbjct: 444 ASPLLEQRRHRLHVDIDADV-RCHGDPVRLSQVVANLLTNAAKYTAPGGDIGLHVARGDG 502

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               I ++D+G GI    + ++   F +        + G+G+GL + +S +  HGG    
Sbjct: 503 DTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGLALVKSFVMLHGGTVRA 562

Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDNHE 487
            S     G      LP  R    +  D  E
Sbjct: 563 DSAGPGLGSTFTVTLPEYR-PPAVEADARE 591


>gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
 gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
          Length = 1206

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 151/354 (42%), Gaps = 27/354 (7%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVA--------LSTQAIMSMHVLDISLAGMLATALSFFT 201
           S + +S   +   +  +  PV +A        +    + S     + +  +L   +    
Sbjct: 451 SAAPISGNPVLQELIRTRAPVAIADIEQRPDSMVMLPLRSPSKALLVVPLLLDGDIIGSI 510

Query: 202 YI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +       H   S + ++   A +  L  +       + +  +R  E +  K+ F  ++
Sbjct: 511 SLRQNHQVRHWQPSEIDMVLLVAAQAALAVQQARLYQKTRQQAERLLEADRLKTEFFQNV 570

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE RTPL  ++G  E +  +      ++          R+ + LL L+N++LDL R +A
Sbjct: 571 SHEFRTPLTLMIGPLETVVNQQQDLSLDQ-----AKIALRNSRRLLRLVNQLLDLQRFDA 625

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GR + S     L++  ++ +   +     K I +   +  S   ++ D +   +V+ NLL
Sbjct: 626 GRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQ-SCPQLYLDLERFDKVLYNLL 684

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+KFT   G + V++    G    + +KD G GI + ++P +   F Q   +   + +
Sbjct: 685 SNAMKFTPTDGTITVSLQP-EGNYCRLMVKDTGIGIKQEQLPHLFERFRQAEGSANRSFE 743

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFIPE 483
           G GLGL + + ++  H G+  + S+  +G             LP  +VL+   E
Sbjct: 744 GSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQMGNLHLPPEQVLDVPAE 797


>gi|212288555|sp|A5A2P0|WALK_STASR RecName: Full=Sensor protein kinase walK
 gi|145423879|gb|ABP68577.1| YycG [Staphylococcus sciuri]
          Length = 419

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 5/230 (2%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F+A++SHELRTPL ++  + E +E       + E    ++         ++ L+N+
Sbjct: 182 ERREFVANVSHELRTPLTSMRSYIEALEEGAW--RDPEVAPTFLNVTREETDRMIRLVND 239

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L LS++++   +++   I+    + + I   +  +Q KN+   + I      V  D   
Sbjct: 240 LLQLSKMDSSSDQMNSELINFNMFINKIINRHE-MSQGKNVTFIRDIPVKGLFVEIDPDK 298

Query: 368 MRQVILNLLSNAVKFTAI-GGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           M QV  N+++NA+K++     RV   V   T      I IKDNG GI   ++  +   F 
Sbjct: 299 MTQVFDNVITNAIKYSQESHKRVEFHVKQNTLYNRMTIQIKDNGIGIPVNKVDKIFDRFY 358

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   A      G GLGL I + I+  H G+    SK  +G  +   LP  
Sbjct: 359 RVDKARARKMGGTGLGLAITKEIVEAHKGRIWASSKEGQGTSIYITLPCE 408


>gi|111220737|ref|YP_711531.1| putative two component hybrid sensor kinase [Frankia alni ACN14a]
 gi|111148269|emb|CAJ59940.1| putative two component hybrid sensor kinase [Frankia alni ACN14a]
          Length = 618

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 29/333 (8%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P+             +  I  A +  +           L  +  ++   Q E   L AEL
Sbjct: 139 PLAPGAVVDDARRTRLRQILAATVPLSPADELRVQNSELVSALAELRDNQNELLRLNAEL 198

Query: 229 EVAKS-------------------------LSDETRKRAEEENLAKSRFLASMSHELRTP 263
           E                               DE        N AK+RFL S+SHELR P
Sbjct: 199 EETNRGVLALYSQLSAELEETNRGVVALYGELDERGIALTRANEAKTRFLRSVSHELRAP 258

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N++LG + ++       L +E  +  +  I  S + LL L+N++LDLS+ E+GR E + 
Sbjct: 259 VNSVLGLARLLLDPAGDSLTDE-QRRQVELILASTKDLLTLVNDLLDLSKAESGRLEPAL 317

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             + +  ++      L+  A    +E+  + D  +  ++ DE  + +V+ NL+ NA+KFT
Sbjct: 318 EQVDIRAVLAHLDGSLRPLATRPGVELVIEEDGEVGPLYTDETLLGRVLRNLVGNALKFT 377

Query: 384 AIGGRVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
              G V VT   T  +G      ++D G GI+  ++  V   F Q    + +  +G GLG
Sbjct: 378 -EHGEVRVTAARTGDAGDTVTFVVRDTGIGISAEDVEQVFEEFYQARSHLHARTRGTGLG 436

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           LP A+ +    GG+  + S+L  G      LP 
Sbjct: 437 LPYARRVCELLGGRLDLVSELGRGSTFTVTLPR 469


>gi|330972309|gb|EGH72375.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 794

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 256 RLTDHLNELENIVSARTNELKASNLRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 315

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 316 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 371

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 372 ERIPFDLGMLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 431

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 432 FT-RFGRVDVRLTHHRDASSGEHRVRIEVRDTGIGIAQDAQTRIFQPFTQAETAITRQYG 490

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 491 GTGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 528


>gi|254475691|ref|ZP_05089077.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
 gi|214029934|gb|EEB70769.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
          Length = 346

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 10/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  +  F+A++SHELRTPL A++GF E +        +    + ++  +      + 
Sbjct: 113 EQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARD--DAAARERFLEIMQGEANRMN 170

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L L+R+E+         + L   +   +  L+  AQ K + +  ++  + + V 
Sbjct: 171 RLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAQGKEVSLALEVPQTPTLVT 230

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGE 416
            D   ++QV  NL+ NA+K+   G +V V +  +            + + DNG GI    
Sbjct: 231 GDPDQLQQVFTNLVENAIKYG--GNQVLVRLSLSDRDPAVRSAAVRVQVIDNGAGIDPIH 288

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P +   F +        + G GLGL I + I+  H G+  + S   +G     ILP 
Sbjct: 289 LPRLTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAGKGTTFTVILPR 346


>gi|254414468|ref|ZP_05028234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178698|gb|EDX73696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 421

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 8/275 (2%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLN 265
           +   +    + +  DL  E+   + L  E R+   + +E +  KS  ++ +SHE RTPL 
Sbjct: 143 RVAKQTEELRQKNHDLQQEIAQRQHLEAELRQSLTKEKELSELKSNIISVVSHEYRTPLA 202

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            IL  SE+++        ++  + +   I  +  H+  LI+++L +++ EAG+ E     
Sbjct: 203 TILSSSELLQHYGHKWQEDKKQRHF-QRIQNTIHHMTQLISDVLLINKAEAGKLEFKPVP 261

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L    +E +  LQL  +  + +I  +       V  DEK +RQ + NLLSNA+K++  
Sbjct: 262 LDLEAFCQELVEELQLTVKTPH-QIGFRRQGRSRWVGLDEKLLRQFLTNLLSNAIKYSPE 320

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V   + + + +    +IKD G GI E E   +  +F + S        G GLGL I 
Sbjct: 321 GGTVQFDLIFDADQ-VRFTIKDQGIGIPEKEQAQLFDAFYRSSNVGT--ISGTGLGLAIV 377

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           +  +  H G+  + S++ +G   I  +P    L+ 
Sbjct: 378 KKCVERHQGEIAVDSEVGKGTTFIVTIPVGSELSP 412


>gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 1201

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+NAI+G + +     + P      ++Y+  I  +G+ LL  IN+ILD S+I
Sbjct: 563 TMSHEIRTPMNAIIGMTALALNTELSP----RQRDYLQKIQSAGRSLLATINDILDFSKI 618

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373
           EAG+ E+      L ++V E    L  RA  K +E    + P +   +  D   + QV+L
Sbjct: 619 EAGKLEIERREFDLEEVVGEVCDQLAARAAAKGLEFVVDLGPEVPRRLVGDPLRLGQVLL 678

Query: 374 NLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIA 430
           NL  NAVKFT  GG  V + V   +     +   ++D+G G+ E +   +  SF Q   +
Sbjct: 679 NLCGNAVKFTEQGGVCVRLRVQRQTEGQVLLRCAVQDSGIGLGEEQRSRLFQSFQQADSS 738

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I     G GLGL IA+ ++   GG+  + S+   G      
Sbjct: 739 ITRRYGGTGLGLVIAKRLVELQGGEIGVDSQPGVGSTFWFT 779


>gi|310818142|ref|YP_003950500.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391214|gb|ADO68673.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 558

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 16/327 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-- 215
            L   +      +V A++   + +        A +       +  +      +++  +  
Sbjct: 223 GLMRVLRTGESELVPAVTDSLLRAAAAEPYHPALLTQLQAGSYMIVPLRARGNSLGAVTF 282

Query: 216 -------SCQAEKDDLIAEL-EVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLN 265
                      E   L  +L + A    D  R    +     A+   LA +SH+L+ PL 
Sbjct: 283 VSSGSGRRYGPEDLALAEDLCQRASLAIDNARLFGESRRATRAREDLLAVVSHDLKNPLG 342

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +   + ++  E      +E   ++   I  +    L LI+++LD  R+E GR  L    
Sbjct: 343 VVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRALRLISDLLDWGRLEEGRLPLETRE 402

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +    +V E +  ++  A+   +++  ++   L  V  D   + QV+ NLL NAVKFT  
Sbjct: 403 VDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVVCDRGRVLQVLGNLLGNAVKFTDP 462

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV V    T G    + ++D G GI   ++  V   + Q   ++     G GLGL IA
Sbjct: 463 GGRVTVGA-RTQGDEARLYVRDTGKGIPPEQLSYVFDRYWQAKDSVSR---GTGLGLAIA 518

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + ++  HGG+   +S L EG      L
Sbjct: 519 KGLVEAHGGRIEAQSTLGEGSTFSFTL 545


>gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator
           receiver domains [Bradyrhizobium sp. ORS278]
          Length = 754

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 6/282 (2%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           +  +    +          Q    D+    E  ++L+D  R +A   N AKSRFLA  SH
Sbjct: 185 WIAWREALVRSDAGHPAVLQCVGRDVTDRTETERALAD-ARDQANAANRAKSRFLAMASH 243

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTP    L     +    +          Y   +  SG+ L++LINE+LD S+IEAG+
Sbjct: 244 EIRTP----LNGILGMGGLLLETPLTPEQTTYAKAVRASGEALMSLINELLDYSKIEAGK 299

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L     SL  ++ E   +L  RAQ K +EI   +D  L   V  D   +RQV+LNL  
Sbjct: 300 LALEAQPFSLAALIEEITELLAPRAQAKQLEIAAYMDERLPTWVTGDAARLRQVLLNLAG 359

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+KFTA GG   +             ++D G GIA      +   F Q   ++  +  G
Sbjct: 360 NAIKFTAKGGVAVIAEPGIWPNEISFQVRDTGIGIAAEAQERIFREFEQADDSVARSFGG 419

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            GLGL I+  I+   GG+  ++S+   G      +P    L 
Sbjct: 420 TGLGLAISDRIVKRMGGRISLQSEPGAGATFEVCVPLPAALE 461


>gi|86750960|ref|YP_487456.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573988|gb|ABD08545.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 879

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 10/239 (4%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F+A MSHE+RTP+NA+LG +  +    +    +   +  +  IH +G +LL ++++ILD 
Sbjct: 339 FVAMMSHEIRTPMNAVLGLANNLLETRL----DADQRRAVVGIHDAGDNLLEILDDILDF 394

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           S++EAGR  L     S  +IV   + M+  RA  K + I   I   L   +  D   +RQ
Sbjct: 395 SKLEAGRLSLELIPFSPHNIVEHSLSMIGPRAIAKGLAIGTDISDDLPRALIGDPGRIRQ 454

Query: 371 VILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQG 427
           V+LNLLSNAVKFT+ G  V  +      G    I  ++ D G GI   +I ++ + F Q 
Sbjct: 455 VLLNLLSNAVKFTSSGKIVVALECLSNDGSAARIQWTVSDTGIGIDPDKIESLFSDFVQA 514

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIPED 484
             +I+    G GLGL I++ ++   GG+  + S   +G        LP T  +    ED
Sbjct: 515 DNSIRRRFGGSGLGLAISRRLIEQMGGRINVTSTPGQGSAFRFTLTLPVTTDVPPKEED 573


>gi|313887781|ref|ZP_07821463.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846390|gb|EFR33769.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 602

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 113/228 (49%), Gaps = 4/228 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            ++ +  F+A++SHEL+TP+  I  ++E +    +   + ++ + ++  I R    +  +
Sbjct: 366 LDIMRKEFVANVSHELKTPITTIKSYTETLLDSDL---DKKSQRNFLKIIDRENSRMSRI 422

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LS I+  +  L+ S+I   + + E I    +   +KN +I   ID  +  ++AD
Sbjct: 423 VTDLLYLSNIDYNKDNLTLSSIDTYEFIAEAIESQSILIVQKNHKIELNIDMDIKDIYAD 482

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             G  Q++ N++SNA K+T   G++ +      G    I + DNG GI + ++P +   F
Sbjct: 483 RSGADQILTNIISNACKYTPENGKIVIDAT-NKGDLVEIKVTDNGIGIPKEDLPRITERF 541

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            +          G GLGL IA  ++ + GG   + S   EG  +  + 
Sbjct: 542 YRVEKGRSRQMGGTGLGLSIANEMIKSFGGSLKVDSVFGEGTTITLLF 589


>gi|261404060|ref|YP_003240301.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261280523|gb|ACX62494.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 359

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 152/363 (41%), Gaps = 31/363 (8%)

Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
           ++    +G  WT  T V    +       +  A  LI L +  +  F+    V + F   
Sbjct: 19  ILIFAVLGASWTAATYVTRFVYNWTGTPPWDYAVQLIDLFVGVMIFFLFMLVVGMFFKHR 78

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            +A+         +  I+ A    +   F   +    ++   K+++     +D+  EL  
Sbjct: 79  QMAM---------LNSITDAMRRISQGDFSVKMDEQQWRGEFKMIASGI--NDMAGELGR 127

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +++              +  F++++SHE+++PL +I GF+  +    +     E    Y
Sbjct: 128 METM--------------RQDFISNVSHEIQSPLTSIRGFARALRNPRL---TEEKRARY 170

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I   G+ L  L + +L LS +E  +    ++   L   +R  ++  + +   K I++
Sbjct: 171 LEIIEGEGRRLSQLSDNLLKLSSLEGDQPAFEKARYRLDGQLRAVVLAHEPQWLAKRIQV 230

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              +      + A E  + QV  NLL N++KFT   G + + V      G  +++ D G 
Sbjct: 231 DLDLAE--VEIEATEDLLSQVWTNLLHNSIKFTPEDGMITI-VLKAGEDGAEVTMTDTGV 287

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           G+++ +   +   F +   +   A  G GLGL I + I+  H G+  ++S+  +G     
Sbjct: 288 GMSDSDQLHIFERFYKADKSRNRAAGGSGLGLSIVKRIVDIHQGRITVQSEPGKGSAFTV 347

Query: 471 ILP 473
           ++P
Sbjct: 348 VVP 350


>gi|268591166|ref|ZP_06125387.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
 gi|291313393|gb|EFE53846.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
          Length = 924

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    +    AE+ N AKS FLA++SHELRTPL  I+G  E+++   +     E    
Sbjct: 434 QMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRYEL----PEKATR 489

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  S   LL +I++ILD S+IE+ + ++     +  ++    +        +K I 
Sbjct: 490 LVSTMDNSSSLLLQIISDILDFSKIESKQLKIESKLFNCREVFAFVLANYLPLVTKKKIS 549

Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P++   +  D   ++QVI N+++N++KFT   G V + V W       I I+D+
Sbjct: 550 LYSFIEPNIPDLILNDPVRLQQVISNIVNNSIKFT-ESGFVLLYV-WKDENYLKIEIRDS 607

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G G+    +  +   F Q         +G GLGL I + ++    G   + S++  G   
Sbjct: 608 GIGMTHAVVMKLFDPFFQVYDQNNMGHKGTGLGLAICEKLVNLMDGDIEVSSQIGLGSSF 667

Query: 469 IAILPN 474
              +P 
Sbjct: 668 TIRIPL 673


>gi|170020606|ref|YP_001725560.1| hybrid sensory histidine kinase TorS [Escherichia coli ATCC 8739]
 gi|169755534|gb|ACA78233.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
          Length = 904

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
          Length = 769

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 944

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                 ++ R+ A   + +KSRFLA++SHE+RTPL+ I+G ++++    +     E  +E
Sbjct: 411 RLVDELEQARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLSGPL----TEDQRE 466

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  +  + + LL++IN++L++S+IE+G+  L      L   + +  + + +  +EK I 
Sbjct: 467 NLFLMKEAEELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALPIFMGCKEKGIV 526

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYI 403
           +   + PS+   +  D   + QV+ N LSNA+KFT   G + +TV  TS         + 
Sbjct: 527 LDIDVSPSIPDRLIGDGSRLTQVLTNFLSNALKFT-ESGTITLTVVETSRNENGKIELFF 585

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           S+KD G GI      T+   F Q         QG GLGL I++ ++    G   + S+  
Sbjct: 586 SVKDTGIGIPSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMDGSIGVESEGG 645

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
           +G         T +    PE  +E+
Sbjct: 646 QGSRFFFSAMFTLLDEGEPETGNEA 670


>gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 112]
          Length = 771

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|157151584|ref|YP_001450079.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262282636|ref|ZP_06060404.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
 gi|157076378|gb|ABV11061.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262261927|gb|EEY80625.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
          Length = 453

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G L+     E++         ++ +++++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPEFVKVSLTETNRMMRMVSDLLSL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L     +    +   +      + + + K  EI +    +   V  D   M
Sbjct: 269 SRIDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIWVEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QVI N+++NA+K++  GG++ V +  T  +   ISI D G GI + ++P +   F +  
Sbjct: 329 TQVIDNIMNNAIKYSPDGGKITVGMKTTEDQ-LIISISDEGLGIPKKDLPKIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+   G     +LP
Sbjct: 388 KARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLP 432


>gi|146298400|ref|YP_001192991.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152818|gb|ABQ03672.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 813

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 14/245 (5%)

Query: 239 RKRAEEEN-------LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +K+ E  N        ++ + ++++SH+L+TPL+ I+G+SE++    +    N     +I
Sbjct: 306 KKQLEIANFKTKNLLKSREQLISTVSHDLKTPLSTIVGYSELLGNSDI----NTKQSYFI 361

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            +I  S +++  L+ ++LD SRIEAG+  + +    L +I+ +    +Q   ++KNI++ 
Sbjct: 362 KNIKNSSEYITQLVQDLLDFSRIEAGKITIEKVPFFLPEIIEDTARNIQTVYKQKNIDLI 421

Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNG 409
             +D  L + V  D   ++Q++ N++ NA KFT   G + ++   +       I+I+D G
Sbjct: 422 INVDEKLNTRVVGDPFRLKQILSNIIGNAYKFTEE-GHIKISSYVSENENFFVITIEDTG 480

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +G +  V   F Q +  I+    G GLGL I Q I++  GG+  + S   +G    
Sbjct: 481 IGIEKGNLKLVFEEFAQANENIEKKYGGTGLGLSICQKIISFMGGRISLESTFGKGSTFE 540

Query: 470 AILPN 474
             +P 
Sbjct: 541 IKVPL 545


>gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica]
          Length = 1238

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPADQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V +TV          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLTVTARPDGEAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
 gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 769

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|121603351|ref|YP_980680.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592320|gb|ABM35759.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1130

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 146/379 (38%), Gaps = 35/379 (9%)

Query: 123 LLTLVEPGTWTPEYLTIYKSA-----TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           ++ L   G       ++  +A     T +   ++           +  +   + +A    
Sbjct: 324 MVALQPFGESMGVRWSLVVAAPESDFTAVAQAALKKTLAVTALILLLGALLAIALAWRLS 383

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                     +L  +              + + +  +     E     A ++       E
Sbjct: 384 RHFRRLGEAAALLALGEVPPVQPASRIAEVRQLSQTLHDSAGELQRHRAAIQAQTLALHE 443

Query: 238 TRKRAEEENLAKSRFLAS------------------MSHELRTPLNAILGFSEVIELETM 279
             +  E+   +++  L +                  MSHE+RTPLN ++G + ++    +
Sbjct: 444 ANETLEDRVASRTAELNASRDEALGAARAKAAFLAAMSHEIRTPLNGVVGMTTLLADTPL 503

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                   ++Y+  +  S   LL +IN+ILD S+IE+G+ EL    ++L+  + E   + 
Sbjct: 504 DL----EQRDYVHTMRISSDQLLGVINDILDFSKIESGKLELENEPLNLLATIEEACDIG 559

Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
             RA+EK +E+   +   L   V  D   +RQ++LNL++NAVKFT   G+V V+      
Sbjct: 560 APRAREKGLELLVDLGDELPGWVRGDVTRLRQILLNLVNNAVKFTEK-GQVVVSAHVLED 618

Query: 399 ------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                       IKD+G GI       +  SF Q   +      G GLGL I Q ++   
Sbjct: 619 FSPGRGGLVEFRIKDSGIGIEPDRQAALFQSFVQVDASTTRKYGGTGLGLAICQRLVRLM 678

Query: 453 GGQFLIRSKLREGVEVIAI 471
           GGQ  + S   +G      
Sbjct: 679 GGQIGLESAPGDGSTFWFT 697


>gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 726

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 5/265 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E   A++  +  R  AEE N AK+RFLA+MSHELRTPLNA++GFSE +  +  GP   
Sbjct: 466 VTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGFSEALAADPSGPDTA 525

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    +   IH +G+HLL LI+EIL++++  AG   +   A+ L  ++     +++  A+
Sbjct: 526 E----FATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPSVLEGAARLMRQSAE 581

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
              I +     P  L    A+E+ +RQV+LNLLSNAVKFT  GG V +      G    I
Sbjct: 582 AAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEVALEAEALPGGAVEI 641

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D+G GI  G++      F Q   +      G GLGL +A+++  + G    + S+  
Sbjct: 642 RVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALAQSMGATLALESRRG 701

Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488
           EG      L         P+    +
Sbjct: 702 EGTLARLRLAPATPSPAHPDQEPTA 726


>gi|229172537|ref|ZP_04300096.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3]
 gi|228611008|gb|EEK68271.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3]
          Length = 483

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 8/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
            L   +   F   V +L    I++  +L   ++  +   L      T  + K ++     
Sbjct: 163 PLEEMIREFFPYFVFSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVK 222

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              + E  +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I
Sbjct: 223 PLAKDEIGELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGI 282

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +         E   +Y+  I+     +  LI+E+   S+++          + +   + +
Sbjct: 283 KEGI--ARTPEQLDKYLTIIYHKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSD 340

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVT 392
           CI  LQL  Q+K I +           V  D + +R+VI N++ N+VK+     G + + 
Sbjct: 341 CIEELQLELQDKGITVRWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIR 400

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  +      I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  H
Sbjct: 401 MTESID-YVTIYIKDNGVGIEEKALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQH 459

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + SK  +G  +   L
Sbjct: 460 GGDIWVESKKGKGTTLAFTL 479


>gi|293404288|ref|ZP_06648282.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412]
 gi|300896367|ref|ZP_07114909.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1]
 gi|331662402|ref|ZP_08363325.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143]
 gi|291428874|gb|EFF01899.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412]
 gi|300359778|gb|EFJ75648.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1]
 gi|331060824|gb|EGI32788.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143]
          Length = 900

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPTKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|257482695|ref|ZP_05636736.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331012227|gb|EGH92283.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 782

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTEHLNELENIVSARTNELKASNIRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV V +             I ++D G GIA+     +   F Q   AI     G
Sbjct: 421 FT-RFGRVDVRLTHHKDVSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYGG 479

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 TGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 516


>gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
 gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
          Length = 444

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 142/291 (48%), Gaps = 23/291 (7%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----ETRKRA----------E 243
                I+  L  S V+ +    +    IAE  +   + +    E  + A          E
Sbjct: 163 GIVFLISRRLANSFVEPIESIIQASSQIAEGTLKNKIKEDYPGELGELAHSLNHMSNKIE 222

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           +    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  K+ +G I      L++
Sbjct: 223 QAEQMKNEFIASVSHEIRTPLTGIKGWSETLK--TVDHLTEEEIKQGMGIISGETDRLIH 280

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ E+LD SR+++  + L +  + L DI+ E I  L   A+EK ++  + I+     +  
Sbjct: 281 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIER--IELMG 338

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   ++QV LN++ NA+K++   G+V++      G+   I +KD G GIA+  +P +  S
Sbjct: 339 DRNKLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQ-AVIKVKDEGVGIAKEHLPYIEQS 397

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F Q +        G GLGL I + ++  HGG     SK   G  ++  LP 
Sbjct: 398 FYQINNHAT----GAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLPL 444


>gi|332074557|gb|EGI85031.1| sensory box protein [Streptococcus pneumoniae GA17545]
          Length = 449

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 7/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+E   +  F++++ HELRTPL ++  + E ++   +         ++I         ++
Sbjct: 203 EKEERERRLFVSNVGHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMM 259

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLS 359
            ++ ++L LSRI+     L    I+    +   +      + + +EK  E+ +    +  
Sbjct: 260 RMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSI 319

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   M QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P 
Sbjct: 320 WMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPR 378

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 379 IFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1223

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               EK     E+    +      ++ +E +  K++F A++SHELRTPL  I   +E + 
Sbjct: 158 RNITEKKLAEDEIARKNNELRSLYEKIKELDELKTQFFANVSHELRTPLTLISHPTEKLL 217

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                P  +   K+ +  + R+ + LL  +N +LD+S++EAG+  ++ S   +   +   
Sbjct: 218 K---DPGVSADAKKLLEVVARNTRGLLKHVNNLLDISKLEAGKMNVNYSMADVGKTITTI 274

Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +  +L A++K +E         L     D   + +V+ NL+SNA KFT  GG++ ++V 
Sbjct: 275 GLCFELLAKDKKLEYIINAPKDGLLMAAIDRDKIERVVTNLISNAFKFTPTGGKIRISVE 334

Query: 395 WTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
                      +++ D GPG+ E +   +   F Q   +      G GLGL I +  +  
Sbjct: 335 PDQLNQNPAFLVTVADTGPGVPEDQYDIIFERFRQVDGSSSRRHGGTGLGLSIVKEFVQL 394

Query: 452 HGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481
           HGG   + ++    G   +  +P +  ++ +
Sbjct: 395 HGGNVQVTAQKEGTGAVFLIRIPLSPKIDEL 425



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 121/311 (38%), Gaps = 47/311 (15%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           Y+   L  +N  ++   ++      EL+V  +  ++ R   +  N +K  FL ++SHELR
Sbjct: 643 YLQQELCIANTDLVELVSQLTARKRELQVLVNELEKERVLLDRANRSKDEFLMNLSHELR 702

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN I G+S+++         +   +  +  I R       L+N++LD+S + +G++ L
Sbjct: 703 TPLNGIFGWSQLLR---YDGNISTDVRRGLEAIERCAHAQNQLVNDLLDMSLVISGKFSL 759

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
           S   + + +++R        +  +   +I   +      V  D   + Q I NL+SN++K
Sbjct: 760 SNEVVDIREVIRLAAETFINK-DKAKTKIVVDVGDLPLIVCGDPVRLEQSIWNLVSNSIK 818

Query: 382 FTAIGGRVHVTVGW------------------------------TSGRGQYISIKDNGPG 411
           F+  GG V V                                  ++     ++I D G G
Sbjct: 819 FSNQGGSVTVRTSIPSQTGTTPLTLPPGVCGQSEEKLNLLRNHASNKNWCLVTISDQGCG 878

Query: 412 IAEGEIPTVLTSFGQGSIAIKS------AEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464
           I    +P V   F Q   +                   I  +I+  H G     S+   +
Sbjct: 879 ITHDFLPHVFERFRQADNSSTRGHGGLGLGL------SIVNNIVELHNGYLFAFSEGEGK 932

Query: 465 GVEVIAILPNT 475
           G     ILP +
Sbjct: 933 GSTFTIILPIS 943


>gi|259416722|ref|ZP_05740642.1| GAF sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348161|gb|EEW59938.1| GAF sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 589

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILS-CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
             AL     +       ++K +       DDLIA        +D   +  ++    K+  
Sbjct: 151 IGALCVIDRVPRQWSHDDLKTMQQLGCALDDLIALKRARDVAADAEARAQQDAEARKTH- 209

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNN-ETYKEYIGDIHRSGQHLLNLINEILDL 311
           LA MSHE+RTPLN I+G  +++         +     + +  I+RS Q L  L+N+ LD+
Sbjct: 210 LAHMSHEIRTPLNGIIGSVDLLMRGASSLNADLREQNDLLRTINRSAQSLQRLLNDALDI 269

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW--ADEKGMR 369
           ++I+AG+ EL+ +A  L ++V + + +   +A +K +++        +  W   D+  + 
Sbjct: 270 AKIDAGKLELAPAAFDLREVVNDAVKLFSAQASQKGVDLTHSFREIDAKEWRYGDQFRLS 329

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q++ NLLSNA+KFT   G V + +  T     +++++D+G GIA   +  +   F Q S 
Sbjct: 330 QILGNLLSNAIKFTDQ-GTVGLHLHGTPD-ALHLTLRDSGCGIAPERLDKLFLPFTQASA 387

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   + G GLGL I   ++    G+    S   EG      LP 
Sbjct: 388 HVAHEKGGTGLGLTIVHQMVELMQGRIRAESTPGEGTIFHLYLPL 432


>gi|254688611|ref|ZP_05151865.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|256256859|ref|ZP_05462395.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260754083|ref|ZP_05866431.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260883109|ref|ZP_05894723.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|297247709|ref|ZP_06931427.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Brucella abortus bv. 5 str.
           B3196]
 gi|260674191|gb|EEX61012.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260872637|gb|EEX79706.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|297174878|gb|EFH34225.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Brucella abortus bv. 5 str.
           B3196]
          Length = 438

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 150/385 (38%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F        A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATARFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|227538847|ref|ZP_03968896.1| possible sensor histidine kinase/response regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241356|gb|EEI91371.1| possible sensor histidine kinase/response regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 586

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 167/411 (40%), Gaps = 15/411 (3%)

Query: 77  LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L+ + V + +L + K  + +      +  W          + + W L   ++        
Sbjct: 51  LLIVTVISLHLYILKLALQN-KATERIKFWY--FCYLTGCLAVIWALNNGLDSSIPLFFV 107

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
             +      L          F L  ++F                S     + +       
Sbjct: 108 FYLMAGLLSLSDPYRLRFGTFFLIVSLFCLVIDHFFPQFIVPYASQQEKHMDMLFSFVLT 167

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L   T +     +           +  ++     ++     +++ AE+   AKS+F+ +M
Sbjct: 168 LVISTIMISSYKRVYEYEKKVLLLQKKMLKL---SQKELIISKQLAEDATKAKSKFIMTM 224

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLN I+G  ++++   +    ++  +  I ++  S   L +L+ ++LD+SRIE 
Sbjct: 225 SHEIRTPLNGIIGTIDLLKTTKL----DQNQQLLIENLQASSHILSDLVTDLLDISRIET 280

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375
            ++E++ ++  L   +     ++    + K++ +  ++  +    +  DE   +Q++LNL
Sbjct: 281 NKFEVNYTSFDLHQSLISLKHVIDPMLKSKDLTLNIRMAENTPAELITDEARFKQILLNL 340

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           LSNA+KFT   G + + + +     +Y+    +KD G GI +  I  +   F Q      
Sbjct: 341 LSNAIKFTLK-GSITLYISYILLHDKYVLECKVKDTGIGIKKENISRLFDQFSQIEEPQI 399

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
              +G+GLGL I Q ++   GG   + S    G      LP     N IP+
Sbjct: 400 PDNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTFTFRLPVLLPHNQIPQ 450


>gi|29653714|ref|NP_819406.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 493]
 gi|153207222|ref|ZP_01945986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154707337|ref|YP_001425050.1| phosphate regulon sensor protein [Coxiella burnetii Dugway
           5J108-111]
 gi|165918708|ref|ZP_02218794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 334]
 gi|212213135|ref|YP_002304071.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212]
 gi|212218190|ref|YP_002304977.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154]
 gi|29540977|gb|AAO89920.1| phosphate regulon sensor protein [Coxiella burnetii RSA 493]
 gi|120576710|gb|EAX33334.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154356623|gb|ABS78085.1| phosphate regulon sensor protein [Coxiella burnetii Dugway
           5J108-111]
 gi|165917643|gb|EDR36247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 334]
 gi|212011545|gb|ACJ18926.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212]
 gi|212012452|gb|ACJ19832.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154]
          Length = 252

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 120/237 (50%), Gaps = 5/237 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+   +    +S F+A++SHELRTPL  I G+ E +  + +   ++++Y++    +++  
Sbjct: 18  REHINQLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEV--RDSKSYQKIFQQMYQHS 75

Query: 299 QHLLNLINEILDLSRIEAGRYELSES-AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             +  +I+++L LSR+E+  +   E   +++ +I++      +  + EK   I  K +P+
Sbjct: 76  ARMETIIDDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPN 135

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
           L  +   E+ ++ +  N++ N+VK+T   GR++V   +        S+ D G GIA+  I
Sbjct: 136 L-YISGSEEELKSLFSNIIINSVKYTPSKGRINVK-WYRDDDHAVFSVVDTGIGIAKVHI 193

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           P +   F +   A      G GLGL I + ++  H G+  I S+  +G       P 
Sbjct: 194 PRITERFYRVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFPL 250


>gi|163848922|ref|YP_001636966.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526879|ref|YP_002571350.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670211|gb|ABY36577.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450758|gb|ACM55024.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 395

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 153/399 (38%), Gaps = 22/399 (5%)

Query: 81  AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
            +        K  ++  I +  +  + + L    +   L WT    +  G    E   + 
Sbjct: 1   MMKWLRQLRWKLFISHLIIV--LMAYVVLLAAANVLASLGWTGFAPLTLGAAAAETGQLQ 58

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
              T           + +    +   F  +  A+     +S           +   +   
Sbjct: 59  AGLTTEAGELQEQFQSVIQQALLISGFAALAAAVIVSLFVSRR---------IVEPIQTL 109

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
           + ++  L +   +        DD I++L  + +   E   + E   LA    LA ++HEL
Sbjct: 110 SNVSRRLAQGFYRE-RTSIHADDEISQLAHSVNQLAEALDQTERRRLA---LLADVTHEL 165

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPL  I G+ E +    +              I R  + L  LI ++  LSR+EAG+  
Sbjct: 166 RTPLATIGGYMEGLLDGVVSANPAT-----FNLILRETRRLQRLIEDLELLSRVEAGQLP 220

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           +   AI L+ ++   +   +       + +       L  VWAD   + QV++N+L+NA 
Sbjct: 221 VVARAIDLLPVLEAQLAQFEPLFSSNQVTLQLDAPAQLPQVWADPDRVAQVLINILANAY 280

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++T  GG V V V  T      +++ D G GIA   +P V   F +   +      G G+
Sbjct: 281 RYTPAGGTVTVQVT-TDDHEVRVAVIDTGIGIAAEHLPHVFERFYRVDKSRARNSGGSGI 339

Query: 441 GLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVL 478
           GL IA+ ++   GG+    S  + +G   I  LP    +
Sbjct: 340 GLAIARHLIYAQGGEIWAESDGIGKGARFIFTLPLAPQM 378


>gi|332980719|ref|YP_004462160.1| histidine kinase [Mahella australiensis 50-1 BON]
 gi|332698397|gb|AEE95338.1| histidine kinase [Mahella australiensis 50-1 BON]
          Length = 448

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 7/246 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E+       +   K   +    +   +A++SH+LRTPL  I G+ E+I       L +E 
Sbjct: 205 EIMELNETLNNAAKELAKTEKLRRELIANISHDLRTPLTMITGYGEIIRD-----LPDEN 259

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E I  I      L  L+N++++LS++++G  +L  S  +L D+ ++ I       ++ 
Sbjct: 260 TPENIRVIIDEANRLTRLVNDLMELSQLQSGTQQLQISRFNLTDVAKQTIERCAQFTKKD 319

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             +I    D   + V ADE  + QVI NLL NA+ +T     V V+          IS+K
Sbjct: 320 GYDITFSSDGD-AWVEADELKISQVIYNLLGNALTYTGKDKTVAVS-QQIKDGYVRISVK 377

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI+   I  +   + +     + A  G GLGL I +SI+  H G+  + SK   G 
Sbjct: 378 DTGDGISPEHIDNIWDRYYKVDKTHRRAALGTGLGLSIVKSIIQMHDGKCGVESKPGAGS 437

Query: 467 EVIAIL 472
                L
Sbjct: 438 TFWFEL 443


>gi|46199663|ref|YP_005330.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
 gi|46197289|gb|AAS81703.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
          Length = 373

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 11/282 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           LA         +  + +    +     E+D+L         L++      E+    ++  
Sbjct: 95  LARTARLLAEGSRRMAEGEYGVRLPLLERDELGELALHFNRLAE----ALEKVEKTRAEL 150

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           + +++HELRTPL A+ G++E +    +         +    I R  + +  L+ ++  +S
Sbjct: 151 IGTVAHELRTPLAALQGYAEGLMDGVLSKE------KAAEGILREVKAMRRLVEDLSLVS 204

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R+EA   E+    +    ++ E +   Q   Q K + +  +    L  VWADE+ + QV+
Sbjct: 205 RVEAKAVEIRPKPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVWADEERVLQVL 264

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL+NA++ T  GG V +      G      + D GPGI E  +P +   F +   A  
Sbjct: 265 ANLLTNALRHTPQGGEVRLRAFRQ-GEAVAFQVADTGPGIPEEHLPHIFERFYRVDKARS 323

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             E G G+GL +A+ ++   GG+  + S++ EG      LP 
Sbjct: 324 RKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLPL 365


>gi|56419442|ref|YP_146760.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|297530902|ref|YP_003672177.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|56379284|dbj|BAD75192.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|297254154|gb|ADI27600.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 354

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 12/344 (3%)

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAV--FLSFFPVVVALSTQAIMSMHVLDISLAGML 193
            +    S   L   +   ++  +              +++     ++    +      + 
Sbjct: 13  TVIAVMSIVSLFWTAAYFITEALYTQFAWRPHPLVRQIISSILGFLLFGMTMSAISPFLR 72

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEEENLAKS 250
                F+ ++   + +          + D         E+   ++D      +     + 
Sbjct: 73  KREKVFWQHLIDAINRIAKGDFRVNLQADWGGRNHPFAELVTRINDMA-ANLQAMEEMRQ 131

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            F++++SHE+ +PL +I GF+  ++ E +   + E    Y+  I      L  L   +L 
Sbjct: 132 EFISNVSHEIGSPLTSIRGFARALKNEDL---SREQRLHYLDIIETECVRLSKLSENLLR 188

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
           L+ +++  Y    ++  L   ++  I+  + +  EK + +    +     + ADE  + Q
Sbjct: 189 LAMLDSDHYPFHPTSYRLDTQLQTLILHCEPQWAEKELNMCVLFEK--VIITADEDLLSQ 246

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           V LNL+ NA+KFT  GG + + +     +   +++ D GPGI E +   +   F +   +
Sbjct: 247 VWLNLIHNAIKFTPKGGTITIQLQRRGEQ-AIVTVSDTGPGINEHDQLRIFERFYKADKS 305

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              A  G GLGL IA+ I+  H G   ++S+  EG      LP 
Sbjct: 306 RHRAAGGSGLGLSIAKKIVDIHHGIISVQSQPGEGATFTVELPV 349


>gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 571

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
           L K+ F++++SHEL+TPL +I  ++E++    +   + +  K Y+  I    Q L  L+N
Sbjct: 346 LQKTSFVSNVSHELKTPLTSIRMYAELLFEGRI--KDPDKKKTYLQVIVSESQRLTRLVN 403

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
            +LD SR+E GR       I L + + E +   +LR +E  + I          V AD  
Sbjct: 404 NVLDFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFLGEKIFVNADRD 463

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + QV +NL+ N++K+   G  V V+V   +G+   I I+D GPG+ E +   +   F +
Sbjct: 464 AIEQVFINLIDNSIKYAGPGIEVVVSVN-KNGKDCEIRIEDRGPGVPEADRHKIFEKFHR 522

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               + S +QG GLGL IA+ I  + GG  +  S+   G   I  LP
Sbjct: 523 VDDTLTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569


>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1353

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain./Two component regulator
           propeller./Bacterial regulatory helix-turn-helix
           proteins, AraC family./Y_Y_Y domain. [Bacteroides
           xylanisolvens XB1A]
          Length = 1298

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 716 TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 770

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 771 ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 814

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 815 TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 874

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 875 KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 933

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 934 DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 989

Query: 467 EVIAILP 473
                LP
Sbjct: 990 TFSVYLP 996


>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 1298

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 716 TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 770

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                       ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 771 ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 814

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 815 TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 874

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 875 KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 933

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 934 DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 989

Query: 467 EVIAILP 473
                LP
Sbjct: 990 TFSVYLP 996


>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1353

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|295676500|ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295436343|gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 16/254 (6%)

Query: 232 KSLSDETRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +  + E R+R  +            N AK RFLA +SHELRTPL  +L  + V+E   M 
Sbjct: 263 QREAIEERERLLQSEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MI 319

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
           P   E  +  +  I R+ +    LI+++LDL+R+  G+  LS   + + +++   + + +
Sbjct: 320 PELPEQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFR 379

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
              Q K  ++      +   V AD   ++Q++ NL+ NA KFT  GG ++V         
Sbjct: 380 SEIQVKQQDVHVDKRATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-RDERMQ 438

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             IS++D G GI   +I  +  +F QG  ++     G+GLGL I +++   HGG    +S
Sbjct: 439 VQISVEDTGIGIEPEQIGKLFNAFEQGDQSMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498

Query: 461 K-LREGVEVIAILP 473
                G      LP
Sbjct: 499 PGPHCGATFTITLP 512


>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
          Length = 1353

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|228985087|ref|ZP_04145254.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774574|gb|EEM22973.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 293

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++ + +   + +  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEKKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y    +   L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWDEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYE-TLVEVRIRDSGIGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E    +P 
Sbjct: 235 IFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHRGEIKVESEEGNGTEFTVCIPK 289


>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1353

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I +          F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIMIFLATFIGFITFVFRFFWMRKSMEAELEL--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|83311067|ref|YP_421331.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945908|dbj|BAE50772.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 535

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 2/232 (0%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHELRTPLNAI+GFSE +    MG  + + Y  ++ +I  S  HLL +I++I
Sbjct: 306 KTIFLANMSHELRTPLNAIIGFSE-LANSIMGKADMDRYGGFLDNISESAHHLLRVISDI 364

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+SR+E G+  L ES + + + VR  + ++      K   +       L  + ADE+ M
Sbjct: 365 LDVSRVEVGKVILRESVVDVAEAVRAAMRLVSHVVSNKRQSLTFSPQDGLPLIRADERLM 424

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +Q++LNLLSNA KFT   G + V           + ++D+G GIA  +I  VL  FGQ  
Sbjct: 425 KQIVLNLLSNAAKFTPESGNIRVAANLV-DGCVTVEVEDDGVGIAAEDIAMVLQPFGQAE 483

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            AI    +G GLGLP+A+  M  HGG   + S++ EG +V+   P + V+  
Sbjct: 484 NAISPKHEGTGLGLPLAKGFMELHGGSLTLESRVGEGTKVMLTFPASCVVTE 535


>gi|222152721|ref|YP_002561898.1| sensor histidine kinase [Streptococcus uberis 0140J]
 gi|222113534|emb|CAR41324.1| sensor histidine kinase [Streptococcus uberis 0140J]
          Length = 452

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +      +   +I         ++ +I+++L+L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPS---FIKVSLDETNRMMRMISDLLNL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+     L+    +    +   +        Q     K+ EI +    +   +  D  
Sbjct: 269 SRIDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVSGKSYEIIRDYPITSVWLEIDND 328

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QVI N+L+NA+K++  GG++ V +  T  +   ISI D G GI + ++P +   F +
Sbjct: 329 KMTQVIENILNNAIKYSPDGGKIRVKMKTTDSQ-LIISISDQGLGIPKKDLPLIFDRFYR 387

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              A   A+ G GLGL IA+ I+  H G    +S   +G     +LP  + +    +D  
Sbjct: 388 VDKARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSDYGKGSTFTIVLPYEKDVVAGTDDEW 447

Query: 487 ES 488
           E 
Sbjct: 448 ED 449


>gi|229138689|ref|ZP_04267271.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26]
 gi|228644808|gb|EEL01058.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26]
          Length = 351

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 147/354 (41%), Gaps = 16/354 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               +  +         +  Y S++++ AL I          +  + F  +V+      +
Sbjct: 9   VIGAVLALFSFLTIIWSIAFYVSSSVINALEIRVSPFVTFLISDMVGFVFIVLIWVLIGV 68

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +     +  +  ++                 +VKI + +    ++   ++    ++DE  
Sbjct: 69  LMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYNGEIGVLVKSINDMTDELN 122

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +   + E  + Y+  I     
Sbjct: 123 ----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---SEEKREHYLTIIETETT 175

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 176 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 233

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQH 292

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 293 IFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346


>gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
 gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
          Length = 818

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 407 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 466

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 467 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 522

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 523 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 582

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 583 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 641

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 642 GKVEAASAGKNRGTTFAITLPA 663


>gi|163815965|ref|ZP_02207335.1| hypothetical protein COPEUT_02145 [Coprococcus eutactus ATCC 27759]
 gi|158448775|gb|EDP25770.1| hypothetical protein COPEUT_02145 [Coprococcus eutactus ATCC 27759]
          Length = 454

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHE 259
           Y+T ++ K   ++ +   +   ++A  E+   +    ++ A+  + +  +  F A++SHE
Sbjct: 180 YLTRNILKPIEQMANRLDDDTHIVAYREMRPFIDMIQKQHADIVKSSQMRQEFTANVSHE 239

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           L+TPL +I G+SE+IE    G         +  +IH++   LL LIN+I+ LS ++    
Sbjct: 240 LKTPLTSISGYSELIET---GMATEADVHHFATEIHKNSNRLLTLINDIIRLSELDVSED 296

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
             +   + L  I R    ML + A++ N+ +          ++A++  M +++ NL  NA
Sbjct: 297 TPAMEKVDLAVIARTATDMLAINAEKNNVTLSYSGSHE--YIYANKMMMEELVYNLTDNA 354

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +++    G V V+V  + G    + +KD G GI       +   F +   +   +  G G
Sbjct: 355 IRYNNKNGSVDVSVN-SDGDKVTLRVKDTGIGIPAEHQERIFERFYRVDKSRSKSTGGTG 413

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           LGL I + I+A +     + S+   G ++    
Sbjct: 414 LGLAIVKHIVARNNAHLDMVSEPGRGTDISVTF 446


>gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
 gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
          Length = 488

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 142/280 (50%), Gaps = 19/280 (6%)

Query: 207 LFKSNVKILSCQAEKDDL----------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L K   + L+ Q+E D L          + +    +   ++ R  AE  N +K+ F+A+M
Sbjct: 61  LHKEPQEPLAEQSELDRLNTSVDTLENVLKQQAEREQQLNKARLDAETANKSKAEFIATM 120

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLN ILG  E++E E +        +++    H + + LL+ +N+ILD S++++
Sbjct: 121 SHEIRTPLNVILGALEILEEEPLTQHG----QKFTVSAHNAAKILLSQLNDILDYSKLDS 176

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375
           G+  L+ ++ S   + +  I +   +AQ+K I +       + + V  DE    Q++ NL
Sbjct: 177 GKAILNNTSFSPFQMAQSIIAIFADQAQQKGITLQLNSTLSTNNYVLGDEGKSSQILTNL 236

Query: 376 LSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           L NA+KFT   G + + +    +   +    S+ D G GI   +I ++L+ F Q   +  
Sbjct: 237 LGNAIKFTDS-GSISINLKSNIYKGKQAITFSVTDTGIGIDNNKIQSILSPFVQSDASFS 295

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               G G+GL I+Q+++   GG+  I S+L +G      L
Sbjct: 296 RRYGGAGMGLAISQALVHLIGGELEITSELHQGSTFSFTL 335


>gi|170718893|ref|YP_001784065.1| multi-sensor hybrid histidine kinase [Haemophilus somnus 2336]
 gi|168827022|gb|ACA32393.1| multi-sensor hybrid histidine kinase [Haemophilus somnus 2336]
          Length = 618

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 9/337 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L    +   V L    VV  +    I    V    + G+ +      FFT +   L KS
Sbjct: 24  SLLGVCILAVVALLTQIVVSLIFMGTIYWQDVARSIIFGLFSAPFVLYFFTLLVEKLEKS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + +        + ++E  +A+          E+ +  K+  + ++SHELRTPLN I+G 
Sbjct: 84  RLDLAKLVDNLRNEVSERILAERKLSVALSEIEKTSQDKTALMTTISHELRTPLNGIIGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++  + +     E  + Y+  I+ S   L ++ ++I+DL +I+A R EL     +L  
Sbjct: 144 SQILLDDKL----TEQQRNYLKTINVSAISLTHIFSDIIDLEKIDANRIELHYQPTNLCS 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            + +      L A ++ ++     D  L   +  D   + Q++ NL++NAVKFT   G++
Sbjct: 200 FLNDITNFATLMAAQRKLKFELVCDKDLPDWLMLDSARLSQILWNLINNAVKFTPA-GKI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + V   +      ++ D G GIA+GE+  + T + Q          G G+GL ++++I 
Sbjct: 259 KLKVSRLTDDTFSFALSDTGVGIAKGELDKIFTMYYQV-QETDHKPIGSGIGLAVSKAIA 317

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              GG   + S+L +G      L    V      +++
Sbjct: 318 GLMGGDLTVESQLHQGATFTLTLQAKAVEKPAESESN 354


>gi|170691461|ref|ZP_02882626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170143666|gb|EDT11829.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1490

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 136/297 (45%), Gaps = 19/297 (6%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKD--------DLIAELEVAKSL-SDETRK 240
            A +    L  F     H FK     L  + E D         + A +E A++      R 
Sbjct: 780  ARLETPVLVEFRLGREHEFKWTRAELVPRREADGGVVWSGYWVDASIEHARAEELARARD 839

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             AE  + AK  F A MSHE+RTP+N +LG  EV+E   +    N    E +G IH S   
Sbjct: 840  LAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NSDQGEMLGMIHESAGA 895

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            LL +++++LD S+IEAGR  +    I L ++V   + +L  RA EK +++   I   ++ 
Sbjct: 896  LLQILDDLLDYSKIEAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRVDIASDVAA 955

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEG 415
            ++  D   +RQV+ NLL NA+KFT   G V V V   +     +   + ++D G GI   
Sbjct: 956  TLRGDSVRLRQVLFNLLGNAIKFTPE-GHVDVRVAAVAQTGELQTIEVIVEDTGIGIPAE 1014

Query: 416  EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                +   F Q   +      G GLGL I + ++    G   + S+   G  +   L
Sbjct: 1015 LQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIQLMDGSLALDSEPGRGTRMTVRL 1071


>gi|306844938|ref|ZP_07477519.1| histidine kinase [Brucella sp. BO1]
 gi|306274570|gb|EFM56359.1| histidine kinase [Brucella sp. BO1]
          Length = 438

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 153/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A +        + + +   +   A    + I   +     + +        
Sbjct: 104 FDHTATVRFANAAALEAFQSLQNGTALYLRFRAPEMLSLIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGSATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|209525035|ref|ZP_03273579.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494444|gb|EDZ94755.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 397

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 145/393 (36%), Gaps = 35/393 (8%)

Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
              WR           L       +         L +     +LI ++   +   +    
Sbjct: 11  RGRWRHLSRP------LLDHTYPELMAKVDLRSRLFLSHLLVMLIGVTSLVIIGKISSPR 64

Query: 163 VFLSFFPVVVALSTQAIMSMHVLD------------ISLAGMLATALSFFTYITYHLFKS 210
            F+     +     +       L              S+      A+    ++T  + + 
Sbjct: 65  FFVRSLEQLEGPGFRLQYVRTRLVEGFEIAWNRSTFWSVLAGTTAAVCLSYWVTKRITQP 124

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----------KSRFLASMSHEL 260
             ++     +         ++ S   E  + A   N            +   ++ ++HEL
Sbjct: 125 LTEMEEITHKFAKGNLSERMSSSEIHELNQLAMSFNQMASSLQDVEQKRRELISDLTHEL 184

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTP+  + G+ E +    + P  +   +     + +  + L  LIN + +LS++E+G   
Sbjct: 185 RTPITVVRGYLEEMAEGRISPSPDIYQQ-----LTKETKRLERLINNLQELSKVESGYLP 239

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380
           ++   ++L  ++   +     +  E+   +       L    AD     Q+++NLL NA+
Sbjct: 240 INPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLLGNAI 299

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           ++T   G + + V +T G   ++ + D G GI+E ++P V   F +   +      G G+
Sbjct: 300 RYT-KHGLIKIEV-YTHGGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGGTGI 357

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL I + ++   GG+  + S+L +G      LP
Sbjct: 358 GLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 390


>gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50]
 gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50]
          Length = 1238

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPADQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V +TV          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLTVTARPDGEAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 729

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
           L     I   +          Q  +D L A +E   +     R  AE  N AKS FLA+M
Sbjct: 303 LVGVLGIARDITALRQAETELQRRRDHLEALVEARTAELAAARDAAEAANRAKSEFLANM 362

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+RTPLNAI G + +I    + P         +  +  +  HLLNLIN IL+ S+IEA
Sbjct: 363 SHEIRTPLNAISGMAHLIRQAGLAPDQTAR----LDKLEAASTHLLNLINAILEFSKIEA 418

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G+  L  + + +  +V   + ML  RA  K +E   ++      +  D   ++Q ++N  
Sbjct: 419 GKLTLESAPLQVERLVERVVAMLHERAAAKGLEFVSEVGVLPPYLLGDATCLQQALINYA 478

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NA+KFT   GR+ + V               ++D G GI    +P + T+F QG  +I 
Sbjct: 479 ANAIKFTRQ-GRITLRVALVEEDAGSVLLRFEVEDTGTGIEPEVLPRLFTAFEQGDNSIT 537

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
               G GLGL I Q +    GG+    S    G         T+  +  PE 
Sbjct: 538 RQHGGTGLGLAITQRLARLMGGEAGADSTPGVGSRFWFSARLTKGESAEPEA 589


>gi|225376456|ref|ZP_03753677.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
 gi|225211832|gb|EEG94186.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
          Length = 470

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 126/322 (39%), Gaps = 8/322 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
               A   S   +          +  V+      ++   +   T+      K N      
Sbjct: 157 SYLTASANSLSAIAYTTLALIFAAAFVVLALFTYVVYIPIRKITHAADEYSKGNFDAKID 216

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
               D++         +++E     E  +  K  F++++SH+ R+PL +I G+ E +   
Sbjct: 217 VHSNDEIGYLAASLNYMANELNTLEE--DQRK--FISNVSHDFRSPLTSIKGYVEAMLD- 271

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
             G +  E  ++Y+  I    + L  L   +L+L++  +    L  +   +   ++  ++
Sbjct: 272 --GTIPVEMQEKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDVTDFDINQTIKTTLL 329

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +     K+I     +      V AD   ++QV+ NL+ NA+KF+     + +      
Sbjct: 330 TFEGICANKHIRFNLILSGEQLFVTADFSKIQQVLYNLIDNAIKFSHQDSTITIETT-EK 388

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
               ++S+KD G GI +  +  +   F +  ++    ++G GLGL I + I+  HG    
Sbjct: 389 NDKVFVSVKDTGIGIPKDSLKKIWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENIN 448

Query: 458 IRSKLREGVEVIAILPNTRVLN 479
             S    G E I  LP  +   
Sbjct: 449 CISTEGVGTEFIFTLPIAKDKE 470


>gi|332706881|ref|ZP_08426942.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354765|gb|EGJ34244.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 436

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 17/284 (5%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           + + + +   ++          IA  +  +    +   + +E N  KSR ++ +SHE RT
Sbjct: 148 LEHRVAEQTDELRQKNQYLQREIASRKCLEEELRQALNKEKELNDLKSRIVSVVSHEYRT 207

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  IL  +E++        ++E  + +   I  + QHL  L++++L  S+ EAG+ E  
Sbjct: 208 PLATILSSTELL-EHYSHKWSSEKKRRHFQRIQTTVQHLTKLVSDVLLFSKAEAGKLEFK 266

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS------------LSSVWADEKGMRQ 370
              I ++   +E +   +L A    + I      +                  DEK +RQ
Sbjct: 267 PLPIDVVAFCKEIVEEFKLTA-NTGLTINFNCTNNSKETSCCINQGWFEKADLDEKLLRQ 325

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NLLSN +K++  GG +   +   S       I+D+G GI   +   +  +F + S  
Sbjct: 326 ILSNLLSNGIKYSPDGGDIQFDL-IMSDHSTMFRIQDSGIGIPPEDQERLFEAFQRSSNV 384

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                 G GLGL I +  +  HGG+  + S++  G      LP 
Sbjct: 385 GT--ISGTGLGLAIVKKCVNLHGGEICVDSEVGVGTAFTVTLPL 426


>gi|254496713|ref|ZP_05109575.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12]
 gi|254354054|gb|EET12727.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12]
          Length = 537

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 132/254 (51%), Gaps = 11/254 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I EL+ A++  +  ++ AE  + AK+ F+A+MSH++RTPL  ++G ++++E        +
Sbjct: 217 ITELKKAQADLNIAKEAAEAASHAKTEFIANMSHDIRTPLTGVVGMAKLLEDNVH----D 272

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIE-AGRYELSESAISLIDIVRECIIMLQLRA 343
              K+Y   +  SG+ LL+++N ILD+   + A   +L E + +L +++ + + + +   
Sbjct: 273 ANQKQYAHWLGESGKQLLHMLNGILDVVSADNAHEDDLHEESFNLHEVINDIVQLERPST 332

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
             K +++   +D ++   + +D+  + +++LNLL NA+KFT   G+V + V         
Sbjct: 333 LIKGLDLVTFVDAAIPPFLVSDQTKIHRILLNLLGNAIKFTQE-GQVGIHVNLLEKNETH 391

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 I D G GI +     V   F +   + K    G G+GL IAQS +   GG+ L+
Sbjct: 392 VLVQFRITDTGIGIPQELQDKVFDRFYRIIPSNKGTYTGHGVGLHIAQSYVELLGGEILL 451

Query: 459 RSKLREGVEVIAIL 472
            S+L  G      L
Sbjct: 452 SSELGVGTTFYFDL 465


>gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 430

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 21/248 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              A+   +A++SHELRTPL ++    E ++         +     +  + +    +  L
Sbjct: 187 LERARRDLVANVSHELRTPLASLKLLVETLQS----APPPDIAARMLEQMAQEIDAVTQL 242

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++E+ +LSR+E+GR  L    +++  ++   I  ++ +A+ K+  I  +    L     D
Sbjct: 243 VDELHELSRLESGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDLPPALMD 302

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------------SGRGQYISIKD 407
              + QV+LNLL NAVKFT  GG + V                      +G    IS++D
Sbjct: 303 GDRIGQVLLNLLHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWILISVRD 362

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI+  +I  +   F +   A      G GLGL IA+ ++  HGG+    S+   G  
Sbjct: 363 TGIGISSRDIRRIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQEGRGST 422

Query: 468 VIAILPNT 475
               LP  
Sbjct: 423 FWFTLPVA 430


>gi|312877756|ref|ZP_07737708.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795475|gb|EFR11852.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 566

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 20/239 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  + +F+A +SHELRTP+  I  +SE +        +    K+++  I +    +  L
Sbjct: 339 LDRMRKQFVADVSHELRTPITTIKTYSETLLD----VDDETVKKKFLNVIIKECDRMTRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++L LSR+++G   L    +++ ++VR     +++ A++KN ++      ++  + AD
Sbjct: 395 ISDLLYLSRLDSGENILKIEEVNISELVRFVCEKMRIHAKKKNQKLLCSTQENVV-IEAD 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NL++NAV +   GG++ V +         I++KDNGPGI + ++P +   F
Sbjct: 454 RDRLEQVLINLINNAVVYVQEGGQIEVGLEKDEEH-VRITVKDNGPGIPQEDLPRIFERF 512

Query: 425 GQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A                    IA  I+  HGG+ L+ SK   G     +LP  R
Sbjct: 513 YRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKILVESKEGVGTTFTVVLPLKR 564


>gi|289626956|ref|ZP_06459910.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330866134|gb|EGH00843.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 782

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTEHLNELENIVSARTNELKASNIRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV V +             I ++D G GIA+     +   F Q   AI     G
Sbjct: 421 FT-RFGRVDVRLTHHKDVSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYGG 479

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 TGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 516


>gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 770

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 361 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 420

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 421 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 476

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 477 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 536

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 537 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 595

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 596 GKVEAASAGKNRGTTFAITLPA 617


>gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
 gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 147/356 (41%), Gaps = 22/356 (6%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
            T++  V  G  T  YL I+KS T +  L I+ ++   +  AV        + L  Q I+
Sbjct: 136 ITVIAPVVHGYSTQGYLLIHKSMTQIGQLQITLMNAAYITLAVIY-LLSFSILLGIQFIV 194

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +  I+ A                    N+        +D++         +S + R 
Sbjct: 195 YRPLCKITEA-------------AKQYASGNLDYEIPVNTEDEIGYLSASLNFMSSQLRD 241

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +     + +F+A++SH+ R+PL +I G+ E I     G +  E   +Y+  I    + 
Sbjct: 242 MED----YQKKFVANVSHDFRSPLTSIKGYVEAIAD---GTIPPEMQGKYLNIILFETER 294

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L +L  ++L L+  +     L +    L ++++      + R  +K I I          
Sbjct: 295 LTDLTKDLLTLNEFDTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFARKHLK 354

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD++ ++QV+ NLL NA+KF+     + +      G   Y S+KD G GI    +  +
Sbjct: 355 VVADKRKIQQVLYNLLDNAIKFSDQDSIITIETT-ERGDKIYTSVKDYGIGIPRNALNKI 413

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +  ++    ++G GLGL I +  +  HG    + S    G E I  LP   
Sbjct: 414 WERFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPKAE 469


>gi|145637393|ref|ZP_01793053.1| GTP cyclohydrolase II [Haemophilus influenzae PittHH]
 gi|229847397|ref|ZP_04467498.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 7P49H1]
 gi|145269485|gb|EDK09428.1| GTP cyclohydrolase II [Haemophilus influenzae PittHH]
 gi|229809723|gb|EEP45448.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 7P49H1]
          Length = 598

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ IAE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEIAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A++KN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKQKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|158319155|ref|YP_001511662.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158139354|gb|ABW17666.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 463

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 12/328 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           I   +  +++             + +      I+    + I L   +   L   T     
Sbjct: 144 IVGVLRFITSLREVNRDINEIAFLFIGFGALVILISSFVGIFLTKTITGPLKNVTESAEK 203

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   +  I S +   D++    +    ++ E  K+ E     K+ F++S+SHELRTPL +
Sbjct: 204 MALGDYSIRSVKTYDDEIGKLSDTLNYMASEIVKKEE----LKNDFISSVSHELRTPLTS 259

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++  ++     P + E   + +  I      L N++ E+LD S+  +G+  L +  +
Sbjct: 260 IKGWAITLKH---SPDDKEILADGLNIIETESDRLANMVEELLDFSKFVSGKISLEKKEV 316

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           ++ +I+      L  RA   NI+     +  +    +D   ++QV +N+L NA KFT  G
Sbjct: 317 NINEIIDHIKKQLTPRAMRDNIKFEVIAEEPMPIFCSDGNRLKQVFINVLDNAFKFTPAG 376

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G V +   +        +IKD G GI+  ++P V   F +G  ++       G+GL I  
Sbjct: 377 GSVSLVASYR-DGNFIFNIKDTGHGISAEDLPRVKEKFYKGRTSLSQN----GIGLSICD 431

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474
            I++   G F I+S+L +G E+I  LP 
Sbjct: 432 EIISLMKGTFEIKSQLNKGTEIIITLPL 459


>gi|146298306|ref|YP_001192897.1| integral membrane sensor signal transduction histidine kinase
           [Flavobacterium johnsoniae UW101]
 gi|146152724|gb|ABQ03578.1| integral membrane sensor signal transduction histidine kinase
           [Flavobacterium johnsoniae UW101]
          Length = 361

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L  +N+       + + L  E++   +      +  E     +  FL ++SHEL+TPL  
Sbjct: 83  LESTNLINQPITTDMETLSREVKKFATDKKLEIEMLEIREQYRREFLGNVSHELKTPLFT 142

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           + G+   +    M   +    K+Y+    +  + L+ ++ ++  ++++E+G  +L+ +  
Sbjct: 143 VQGYVSTLLDGAMD--DKHIRKKYLKRAEKGVERLIYIVEDLDMITKLESGDLDLNMTDF 200

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            ++++++    +L+++A +K I++  +        +  D+  ++QV+ NL+ N++K+   
Sbjct: 201 DIVELIQNVFDLLEMKADKKKIKLAFESKNVQSVIIRGDQDRIQQVLENLIVNSIKYGKE 260

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG   V V   + +   I I DNG G+ +  IP +   F +   +   +E G GLGL I 
Sbjct: 261 GGLTEVGVVNLTKKKVLIRISDNGEGVEKQNIPRLFERFYRVDKSGTRSEGGSGLGLAIV 320

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + I+  H  +  + S+   G E    L
Sbjct: 321 KHIIEAHKEKVYVESEFGIGSEFSFTL 347


>gi|71737066|ref|YP_275771.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557619|gb|AAZ36830.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|330889304|gb|EGH21965.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 782

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTEHLNELENIVSARTNELKASNIRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV V +             I ++D G GIA+     +   F Q   AI     G
Sbjct: 421 FT-RFGRVDVRLTHHKDVSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYGG 479

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 TGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 516


>gi|260582439|ref|ZP_05850231.1| signal transduction histidine kinase [Haemophilus influenzae NT127]
 gi|260094590|gb|EEW78486.1| signal transduction histidine kinase [Haemophilus influenzae NT127]
          Length = 598

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ IAE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEIAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A++KN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKQKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
 gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
          Length = 529

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 4/236 (1%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           + AEE   A   F++ +SHELR+PL +I G   ++     G L+ +     +   HR+  
Sbjct: 281 RMAEERKQA--DFVSMVSHELRSPLTSIKGAMGLLLSRAAGELSPQAV-GLLEIAHRNAD 337

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L+ +IN+ILD+ +I +GR +       + ++V E +       Q   + I         
Sbjct: 338 RLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHEALRSNAATQQRSGVNIRCIGLDVPH 397

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D   + QV++NL+SNA KF+  G  + V V   +     +S++D G GI E +   
Sbjct: 398 MIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVERLASG-VRVSVRDEGTGIPEKDHHK 456

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   F   + + + A+ G GLGL I ++I+   GG     S+  EG   +  LP  
Sbjct: 457 IFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGTISFESREGEGTTFMFTLPTK 512


>gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
 gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
          Length = 922

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+   +++ KSL D     AE+ N AKS FLA++SHELRTPL  I+G  E+++   +   
Sbjct: 421 DISIRVQMEKSLQDVA-DAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRLELSDK 479

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            N      +  +  S   LL +I++ILD S+IE+ +  +     +  D+    +      
Sbjct: 480 AN----RLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLANYLPL 535

Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K I ++  I+P++  +  +D   ++QVI N+++N++KFT   G V   V W      
Sbjct: 536 VAKKQIALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDS-GFVFFYV-WRDENYL 593

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            I IKD+G G+ +  +  +   F Q         +G GLGL I + ++    G   + S+
Sbjct: 594 KIEIKDSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEVNSQ 653

Query: 462 LREGVEVIAILPN 474
           +  G   I  +P 
Sbjct: 654 IGLGSSFIIRIPL 666


>gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
 gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
          Length = 772

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 361 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 420

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 421 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 476

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 477 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 536

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 537 ERHDAQ-AKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 595

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 596 GKVEAASAGKNRGTTFAITLPA 617


>gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
 gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
          Length = 771

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|300932508|ref|ZP_07147764.1| two-component system sensor kinase TcsS1 [Corynebacterium resistens
           DSM 45100]
          Length = 539

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 137/325 (42%), Gaps = 10/325 (3%)

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS--NV 212
              ++   V +    +   +     +    L          +L    ++   + K   N 
Sbjct: 217 ITRLIALQVIIGLIALAAIVVASMYIVRRALKPLNQVEHTASLISRGHLEQRVPKWSPNT 276

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++ +     + ++A+++ A    + + ++A     +  RF+   SHELRTPL ++ G++E
Sbjct: 277 EVGALSQALNRMLAQVQGAFMHVEASERQARRSEASMRRFIGDASHELRTPLTSVRGYAE 336

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           + +               I  I      +  L+ ++L L R++ GR  L +  + ++++V
Sbjct: 337 LYQSGATDDAGM-----VIERISEEAGRMSLLVEDLLALVRMDEGR-PLKQDRVDILELV 390

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
                  +     + + +       +  V  D   + QV+ NLL+NA++       V + 
Sbjct: 391 LHAADSARAGFPGRRVSVN-NKCGDIPVVIGDANRLHQVVGNLLTNALRHGGEDASVQIN 449

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +   S R   I I D+G GIA  ++P +   F +  ++   A  G GLGL I +S++  H
Sbjct: 450 LS-ESQREVSIEIADDGRGIAAEDLPHLFERFYRPDVSRSRASGGSGLGLSIVKSLVEAH 508

Query: 453 GGQFLIRSKLREGVEVIAILPNTRV 477
           GG   + S L EG     +LP+  V
Sbjct: 509 GGTISVASTLGEGTTFTVVLPSAAV 533


>gi|291562137|emb|CBL40953.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 495

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 142/308 (46%), Gaps = 8/308 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---ILSCQAEKDDLIA 226
           +  +      ++  +L   +   +   +      T  +   N+     +    E   L  
Sbjct: 182 MFFSSVLILFITGGMLTAWVYRSILWPIGKLQEATKQIRDGNLDFTLDVEDDDEIGQLCQ 241

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             E  +    E+ +   + +      ++++SH+L+TP+ AI G++E +        + E 
Sbjct: 242 NFEEMRIRLKESTEEKIQYDKESKELISNISHDLKTPITAIKGYAEGLMEGV--ASSPEK 299

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +YI  I+     +  LINE+   S+I+  +   + S I++ +  R+C+  + L  + +
Sbjct: 300 RDKYIRTIYNKANDMDRLINELTFYSKIDTNKIPYTFSKINVSNYFRDCVEEVGLELEAR 359

Query: 347 NIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYIS 404
            IE+ +         V AD + M++VI N++ N++K+     G +++ +    G    + 
Sbjct: 360 GIELGYFNFVDEDVMVIADAEQMKRVINNIIGNSLKYMDKKNGIINIRI-LDVGDFVQVE 418

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+DNG GI + E+P +   F +   +  S++ G G+GL I + I+ +HGG+    SKL  
Sbjct: 419 IEDNGKGIGQKELPYIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGKIWATSKLGI 478

Query: 465 GVEVIAIL 472
           G E+  +L
Sbjct: 479 GTEIHFVL 486


>gi|254709461|ref|ZP_05171272.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|256030955|ref|ZP_05444569.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|261316984|ref|ZP_05956181.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|265988020|ref|ZP_06100577.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|261296207|gb|EEX99703.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|264660217|gb|EEZ30478.1| histidine kinase [Brucella pinnipedialis M292/94/1]
          Length = 438

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+F++RS+L EG   +  LP
Sbjct: 402 LARHRGRFVVRSQLGEGSTFMVRLP 426


>gi|261856648|ref|YP_003263931.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
 gi|261837117|gb|ACX96884.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
          Length = 1167

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 24/267 (8%)

Query: 232  KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +    E+++ A+  N AKS FL+SMSHELRTPLNAILGF++++      PL  E    ++
Sbjct: 744  EQALVESKQAADRANKAKSMFLSSMSHELRTPLNAILGFAQLMAASRREPLT-EKQNGFV 802

Query: 292  GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
              I ++GQHLL LIN++L+L++IEAG   LS   + L  I+R+ + M+   A    I +F
Sbjct: 803  AHILKAGQHLLTLINDVLNLAKIEAGEMTLSPETLDLGVILRDALDMVADNAASTGIALF 862

Query: 352  QKI-----DPSLSSVWADEKGMRQVILNLLSNAVKFTAI------------GGRVHVT-- 392
             +       P    + AD    RQV+LN+L+NA+K+               GG V V   
Sbjct: 863  NEFNGEHSSPEPLLICADLTRSRQVLLNILTNAIKYNRPRGSGGPYSPDNLGGSVWVRRL 922

Query: 393  --VGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
                  +G   + ++I+D G GI   +   +   F +         +G G+GL I + ++
Sbjct: 923  PSYQNDAGNWMHGLAIEDTGMGIPAAQQHRLFRPFERLGQ-EAGTIEGTGIGLLITRQLI 981

Query: 450  ANHGGQFLIRSKLREGVEVIAILPNTR 476
                G+    S+  +G       P  R
Sbjct: 982  ELMQGRIDFESEEGKGTTFFVWWPAVR 1008


>gi|119351159|gb|ABL63474.1| ethylene receptor isoform 1 [Coffea canephora]
 gi|119351161|gb|ABL63475.1| ethylene receptor isoform 2 [Coffea canephora]
 gi|119351163|gb|ABL63476.1| ethylene receptor isoform 3 [Coffea canephora]
          Length = 740

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 127/286 (44%), Gaps = 31/286 (10%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ +        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 307 SHAAILEESMRARDLLMD---QNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIA 363

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L      L 
Sbjct: 364 LSSLLQETELTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLH 419

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR 388
            + +E I +++  A  K + +   +   L      DEK + Q++LN++ NAVKF+  GG 
Sbjct: 420 GLFKEVINLIKPIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGG- 478

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           + ++                             + +KD G GI+  +IP + T F Q   
Sbjct: 479 ISISASVAKSDSLRDPRAPDFFPVLSDNHFYLRVQVKDTGSGISPQDIPKLFTKFAQSQS 538

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE--VIAIL 472
                  G GLGL I +  +    G   + S+ L +G     +  L
Sbjct: 539 LAAKNSGGSGLGLAICKRFVNLMDGHIWLESEGLGKGCTAIFMVKL 584


>gi|159900990|ref|YP_001547237.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894029|gb|ABX07109.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 581

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 126/271 (46%), Gaps = 5/271 (1%)

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +      I E    ++L    +  AE  N AKS FL+++SHELRTPLNAI+G+SE+I  +
Sbjct: 307 RVAAVRDITEQRHFENLLLTAKDDAEAANRAKSTFLSTVSHELRTPLNAIVGYSEMIYED 366

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
            +     E   +    I  +   LL+LI+ +L ++ ++A    L    I L   +     
Sbjct: 367 LIDRSMPELAMDM-TRIRSASDRLLSLIDGVLTITDLDAEVVRLEYETIDLALAIGSISD 425

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396
            LQ +AQ+    +      +  S+ +D+  +R +I +LL NA+KFT   G + ++V    
Sbjct: 426 QLQAKAQDNKNTVQLLGSQNWGSIISDDHKLRMIIYHLLDNAIKFTHA-GLISISVQRLQ 484

Query: 397 --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
             +G    I+I+D G GIA  +   +   F Q   +     +G GLGL ++  +    GG
Sbjct: 485 HAAGGWLEIAIRDTGIGIAHEQFERIFEPFVQADSSATRQYEGTGLGLAVSMRLARALGG 544

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              + S+L  G      +P       +P   
Sbjct: 545 TIELDSRLGIGSTFTLHMPEHPTKPNVPSPQ 575


>gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei B7210]
          Length = 757

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 346 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 405

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 406 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 461

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +       V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 462 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 521

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 522 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 580

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 581 GKVEAASAGKNRGTTFAITLPA 602


>gi|323691648|ref|ZP_08105910.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504282|gb|EGB20082.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 374

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 149/353 (42%), Gaps = 16/353 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV------VVALSTQAIMSMHVL 185
               Y  +      +  ++  ++    L    +   F +       + +    I+ + V 
Sbjct: 11  TNIFYSAVITCLIEVFLIANVSMIVSYLKETRYADSFLLQMTEINTLMVLIYVILGIAVF 70

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAKSLSDETRK-- 240
            ++   +L  AL +   I+  +   +   L+   E    D+          + ++ R+  
Sbjct: 71  TVTFLTLLEKALRYIGKISSAIQNISEGDLNTTVEVIGDDEFTQMAVNLNKMMEDIRRLM 130

Query: 241 -RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +  E    K+  + +++H+LRTPL +I+G+ E++  +    +  E  K+YI   +   +
Sbjct: 131 DKEREAERTKNELITNVAHDLRTPLTSIIGYLELLSGKV--QIPQEMQKKYIDIAYAKSK 188

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI ++   +++  G+  +    + ++ ++ + +        +KN+    + +    
Sbjct: 189 RLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSFVDKNLSYELQSNVPGK 248

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD   + ++  NL++NA+K+ A G RV V +  T      +S+ + G  I   E+P 
Sbjct: 249 VITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEP-TVTVSVTNYGYVIPADELPL 307

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           V   F +   +  +   G GLGL I+++I+  HGG   + S L  G      L
Sbjct: 308 VFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLN-GTVFTVKL 359


>gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 849

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 12/238 (5%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N I+G ++++    +     E  + +   I  SG+ LL +IN+ILD 
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEALLVIINDILDY 397

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370
           S+IEA R  L      L   + E  ++LQ +A+ K I++    D  L      D   +RQ
Sbjct: 398 SKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQ 457

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           V+ NL+ NAVKFTA  G V + V             ++++D G GIA   +  V   F Q
Sbjct: 458 VLTNLIGNAVKFTAA-GHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQ 516

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIP 482
                    +G GLGL I + ++    G   + S+   G        LP        P
Sbjct: 517 IEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAADDEAAPP 574


>gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 938

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
             +    E    +E+ N +KS FLA++SHELRTPL  I+G  E+++  ++   +      
Sbjct: 451 RMEKSLQEMALASEQANYSKSMFLATVSHELRTPLYGIIGNLELLQAHSLPAESV----R 506

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   I        +K + 
Sbjct: 507 LLSTMNNSSALLLKIISDILDFSKIESKQLKIESREFSCQEVISHVISNYLPLVVKKPLT 566

Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           ++  I+P +   +  D   ++QVI NLL+NA+KFT   G V + V        Y+ IKD 
Sbjct: 567 LYCYIEPGVPDYICNDPVRLQQVISNLLNNAIKFTDT-GCVIIHVT-VDKDYLYVRIKDT 624

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++  +  +   F Q     +S+ QG GLGL I + ++    G   + S+ + G   
Sbjct: 625 GVGISDKALIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSMF 684

Query: 469 IAILPN 474
              LP 
Sbjct: 685 SIRLPL 690


>gi|269928977|ref|YP_003321298.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788334|gb|ACZ40476.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 936

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 135/331 (40%), Gaps = 10/331 (3%)

Query: 149 LSISALSNFMLPYAVFLS--FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           ++    S   L  A          ++      +    +  + +A +     S    I + 
Sbjct: 601 IASVMRSGEPLLRATIAPEEAQAGLMPGQEAFVAQFPIHSLLIAPLSVRGRSIGALIVWR 660

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPL 264
               +       +   DL      A    D     + A+E  LA+  FL+  SHEL+TPL
Sbjct: 661 DRPDHPYTEEDLSFLQDLAD---RAALAVDNAMLYRAAQEAVLAREEFLSVASHELKTPL 717

Query: 265 NAILGFSEVIELETMGPLNN-ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
             + G+  ++  E      + E  +E+  ++         LI ++LD SRI+ GR +L  
Sbjct: 718 TTVKGWVYLLADEVRREDPDREAIREFTDELQSQIDRFEGLIADLLDASRIQQGRIDLRP 777

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             ++L D+ R  +   +   +           P   +   D   + QV++NL+SNA+K++
Sbjct: 778 EPVALNDLARRVLARFEHAPERTPRHTLTLEAPEPIAGIWDPDRLEQVLVNLISNALKYS 837

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +    G    +++ D G GIA  +   +   F +   A + A  G GLGL 
Sbjct: 838 PDGGDVRVRLRR-DGDVVELTVSDEGIGIAPADQKRLFQPFSRTEAARQRAS-GTGLGLY 895

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           I Q I+  HGG   + S+  +G  V   LP 
Sbjct: 896 ITQRIVREHGGTIDLFSEPGKGTTVTVRLPV 926


>gi|257413676|ref|ZP_04743807.2| putative response regulator receiver domain protein [Roseburia
           intestinalis L1-82]
 gi|257202723|gb|EEV01008.1| putative response regulator receiver domain protein [Roseburia
           intestinalis L1-82]
          Length = 903

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 183/433 (42%), Gaps = 43/433 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           ++ + +     +           +  L        L  +                  L  
Sbjct: 25  IYTVYMVVAAVYLKWPSWVAAVIICGLLASIGLRMLTGRYSR---------------LAK 69

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVV 172
                + W  + L    T               +A S+  LS F L    ++S    + +
Sbjct: 70  LFCSVMIWMNIILYTVFTDGSS------LTMATVAASVVMLSLFDLIEINYISLVATIFL 123

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                 ++     D  +  M      F   I        ++I+  +  K+ +  ++E   
Sbjct: 124 FCLDTFLLDKVSYDNPIREMEFFMQFFAIII--------LEIMENKQLKNRIQHDME--- 172

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +ET +  E+   AK  F+A++SHE+RTPLN+I+G    I  E +    ++T KE + 
Sbjct: 173 --FNETMRELEDAKQAKDDFMANISHEIRTPLNSIIG----IGSELLDAKVDDTTKEQLY 226

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           DI  +G++L++L+++ILD S +E    EL E   ++  ++ + + M  +  +EKN+EI  
Sbjct: 227 DITVAGRNLMSLVSDILDFSELENDTMELVEEPYNITSVINDVVNMAHVWNKEKNLEIIV 286

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR-GQYISIKDNG 409
             +  + + +  D + + ++ILNL++NA+KFT  GG +  V     S      + +KD G
Sbjct: 287 DCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAGGVILFVGARKESYGINLMVKVKDTG 346

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++E  I  +  ++ Q          G+GLGL I++ ++A   G   I S    G  V 
Sbjct: 347 IGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAISRKMIAKMNGHMHIESVPDAGTTVS 406

Query: 470 AILPNTRVLNFIP 482
            I+P  RVL  +P
Sbjct: 407 IIIP-QRVLTDMP 418


>gi|239905265|ref|YP_002952004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795129|dbj|BAH74118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 825

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 141/370 (38%), Gaps = 23/370 (6%)

Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184
             V+          +      L      A                 V A S         
Sbjct: 141 PFVDFLHPDDRRTVLGIHLRRL--AGGQAPQGHAFRIVTADGGLRHVNAASAWMEWEGRP 198

Query: 185 LDISLAGMLATALSFFTYITYHLFKS----NVKILSCQAEKDDLIAE---LEVAKSLSDE 237
             +S    ++   +    +  H+         +  S +   D L AE    E        
Sbjct: 199 ATVSFLADISELKAAEQALAEHVHSQEEVIAARTASLRESNDRLAAEAARHERTAQKLKT 258

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R +      AKS FLA++SHE+RTPLN ILG +++      G   +      +  I  +
Sbjct: 259 ARTKLARALRAKSVFLANVSHEIRTPLNVILGMADLALRPDSGGQAD--LTRCLEMIREA 316

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  L  ++ ++LDLSR+E+GR EL  +  S   ++   +   +  AQ + + +       
Sbjct: 317 GTSLRGILGDLLDLSRVESGRLELDAAPFSPRQVLEATLAAHRHVAQRQGLALTGATAAD 376

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQ--YISIKDN 408
           +   V  D   + QV+ NL+ NA+KFT++GG V + +                  +++D 
Sbjct: 377 VPEHVIGDAGRLAQVLGNLVGNALKFTSVGG-VSLRLTLARPGRRAPDGRVNLRFAVRDT 435

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI E +  T+  SF Q    I     G GLGL I + + A  GG+  + S + EG E 
Sbjct: 436 GIGIPEDKQKTIFESFSQADETIGRRYGGTGLGLAICRRLAALMGGRLRLASAVGEGSEF 495

Query: 469 IAI--LPNTR 476
           +     P   
Sbjct: 496 VLTARFPLAP 505


>gi|118616307|ref|YP_904639.1| two component system response phosphate sensor kinase, PhoR
           [Mycobacterium ulcerans Agy99]
 gi|118568417|gb|ABL03168.1| two component system response phosphate sensor kinase, PhoR
           [Mycobacterium ulcerans Agy99]
          Length = 481

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 12/325 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL---DISLAGMLATALSFFTYITYHLFK 209
            + + +       +   VVV L+  A++   +    ++        +      +     +
Sbjct: 153 TVRSLVWLQIGIGAGVLVVVGLAGFAVVQRSLRPLSEVEQTAAAIASGQLDRRVPERDPR 212

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           + V  LS     + ++++++VA + S+++ ++A        RF+   SHELRTPL  I G
Sbjct: 213 TEVGQLSLAM--NGMLSQIQVALAASEDSAEKARSSEERMRRFITDASHELRTPLTTIRG 270

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           F+E+        +        +  I      +  L++++L L+R++  R  L  + + L+
Sbjct: 271 FAELYRQGAARDVAM-----LLSRIESEASRMGLLVDDLLTLARLDVQR-PLERNRVDLL 324

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +  + +   +   +++ I +     P    V  DE  +RQV+ NL+ NA++ T     V
Sbjct: 325 VLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQHTPDSADV 384

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            V VG T+G    + + D GPG+   +   V   F +   +   A  G GLGL I  S++
Sbjct: 385 TVRVG-TAGENAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLSIVHSLV 443

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG   + +   EG      LP 
Sbjct: 444 KAHGGDVTLTTAPGEGCCFRVTLPR 468


>gi|88857764|ref|ZP_01132407.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88820961|gb|EAR30773.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 650

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E  +A +   + +  AE    AKS FLA+MSHE+RTP+NAILG  ++++   +     
Sbjct: 419 VTEKVIAMNTLAKAKLAAENAAKAKSDFLANMSHEIRTPMNAILGGLQLLQSAQL----E 474

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  + +   S Q LL +IN+ILD S+IE+ + EL ++  SL+D+V      L  +  
Sbjct: 475 DNLRIILDNATYSAQSLLTIINDILDYSKIESNKLELEQAPFSLVDVVDSVKYDLDAQIS 534

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400
            K ++    ID      W  D   ++Q++LNL+SNAVKFT   G V +T+ +T     + 
Sbjct: 535 NKGLDFVVTIDERFVDGWVGDFVRVKQILLNLVSNAVKFTH-NGHVELTIDYTRYHDQQA 593

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
             I++ D+G G+ E     +   F Q   +      G GLG+ I  +++A  G
Sbjct: 594 VCINVIDSGIGMNEEAQQKIFERFSQADTSTTRQYGGTGLGMSITSNLVALMG 646


>gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus
           denitrificans BC]
 gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus
           denitrificans BC]
          Length = 585

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 9/279 (3%)

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSH 258
              T+   ++ + +L        +   +    S+    R  A+    + AKS FLA+MSH
Sbjct: 297 ALATWRTTRNAIIVLEALLSLVVVGFVVLFLSSIRRLARSEAQAQSASRAKSDFLAAMSH 356

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL +I GF+E++EL +  PL     +E    I +  +HL  L+ EILDL+++EAG 
Sbjct: 357 ELRTPLTSIRGFAELMELRSKDPL----VREQSALIRQGAEHLNALLTEILDLAKVEAGS 412

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377
                  ++L  +V E   + ++ A  K++++  ++ P     +  D   ++Q++ NLLS
Sbjct: 413 MPTHPEPVALPVLVHEVTELFRVSAVVKSLQLEARLLPEAEQPLVTDRLRLKQILNNLLS 472

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           NA+KFTA  GRV + V   +   Q    + D GPGIA      +   F QG+  +     
Sbjct: 473 NAIKFTAQ-GRVELAVEPDADGRQMLFHVTDTGPGIAPELQEVIFEKFSQGNARVSYQHG 531

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           G GLGL +++++    GG   ++S   EG      LP  
Sbjct: 532 GTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLALPLQ 570


>gi|149247545|ref|XP_001528181.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448135|gb|EDK42523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 2592

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 233  SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            S  +  ++ AE+    K+ FLA+MSHE+RTP N++L  S  +    +    N T +EY+ 
Sbjct: 2077 SQMELAKQAAEDATAEKASFLANMSHEIRTPFNSLLSCSIFLLDTPL----NSTQREYVE 2132

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I  S    LN+I+ IL  S+IE G + L  +  SL D +   I +   +  +  +E+  
Sbjct: 2133 AIKSSAMVTLNIIDGILAFSKIEHGSFTLDNAPFSLNDCIESAIQLGGEQVVDNELELVF 2192

Query: 353  -KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGR-GQYISIKD 407
                P +++V  D   +RQ+I+NL+ NA+KFT+  G + V+      T  R    IS++D
Sbjct: 2193 FNNCPQINTVMGDVTRVRQIIINLVGNAIKFTSQ-GHIIVSCNAAEITPDRYEILISVED 2251

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GI E     V  +F Q   + +    G GLGL I++ +    GG     S+   G  
Sbjct: 2252 TGIGIPEMSHKKVFGAFSQVDGSSRREFGGSGLGLAISKKLADIMGGDIRFESQEGMGST 2311

Query: 468  VIA 470
               
Sbjct: 2312 FYF 2314


>gi|26000240|gb|AAN75562.1| putative sensor protein BvgS [Bordetella avium 197N]
          Length = 1112

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 9/271 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E         E ++ A+  N AKS FLA+MSHE+RTP+NAI+G  E+   E   P + 
Sbjct: 591 LTERIRLLXDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAIIGMLEL---ELRRPADQ 647

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T +  +   + S + LL+LI +ILD+S+IEA R ELS     L  ++   I + Q  A+
Sbjct: 648 ATDRSALQITYDSARSLLDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLAR 707

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400
           +  + +  +IDP     V  D   ++ VI  L+SNA+KFT +GG +    V         
Sbjct: 708 QHGLSLTLQIDPPHPXXVLLDATRLKXVISXLVSNALKFTEVGGVIVSLKVRTXEDXRAK 767

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +++ D+GPGI+  +   +   F      A  +   G GLGL I++ ++   GG F + 
Sbjct: 768 IELAVDDSGPGISSADRQRLFEPFXXVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDLS 827

Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           S   +G  +  +L N  +   + E     T+
Sbjct: 828 SIPGKGTRIDVLL-NADITTAVEETASPETE 857


>gi|323185298|gb|EFZ70662.1| TMAO reductase sytem sensor TorS [Escherichia coli 1357]
          Length = 904

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|300214818|gb|ADJ79234.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 307

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 136/317 (42%), Gaps = 17/317 (5%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
               F     V++++     ++  +  +  A  L  A +F  ++                
Sbjct: 1   MTVAFAILVGVILSIIIAHFLTKKIARLRNATDLVAAGNFDVHL------DTNGDSELDK 54

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
              D  + ++  +  ++E +++ E     + +F A  +HE+RTPL  I G  E +     
Sbjct: 55  LTLDFNSMVQSLRESNEEIKRQEER----RRQFFADAAHEMRTPLTTINGLLEGLA---Y 107

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             +  E+ ++ I  +    + L+ L+NE LD  +I +G+ ELS++   ++ ++   I  L
Sbjct: 108 DAIPEESKEKSIELMRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQL 167

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + +A++   +      P    V+AD   + Q+I N+  NA++FT   G + ++       
Sbjct: 168 RNKAEQVGDKFEL-YTPDKLMVYADYDRLVQIIFNITQNAIQFT-ENGVISISAE-KGNE 224

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I I DNG G+ E ++  +   + +   + K +     GLGL I   +M  H G   +
Sbjct: 225 ETIIRISDNGIGMNEEQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTV 284

Query: 459 RSKLREGVEVIAILPNT 475
            SK  +G       PN 
Sbjct: 285 ESKEGKGTTFTLRFPNK 301


>gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
 gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
          Length = 773

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 155/426 (36%), Gaps = 28/426 (6%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKK-----VMNSDIKIGEVYVWRIWLLVGQIAIG 118
             + +         +           G +     V+       E       L     A  
Sbjct: 193 LLWLRPAGQGARIPVAAVASPLCDPDGVRSGAVLVLRDVSADHERATANQMLRRLVDASP 252

Query: 119 -LCWTLLTLVEPGTWTPEYLTIYKSATL-------LIALSISALSNFMLPYAVFLSFFPV 170
                +       +W P    ++  A          + ++        L  AV      V
Sbjct: 253 DAIIGVGADRLITSWNPAAQRMFGYAEAQALGRDAGMLVAPRWQRRHPLAAAVRDVHDAV 312

Query: 171 VVALSTQAIMSMHVLDISLAGMLATA-LSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
                     +      +LA             ++  L  + ++    +     L     
Sbjct: 313 SGVDLLCVRENGERFRATLAASPVFDDEQVCVALSLTLRDARLQRRRERDNHHRLRG--- 369

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
                + + R++A+  N  K   LA +SHELRTPLN I G+ EV+      P+     ++
Sbjct: 370 -----ARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRN----PVAEALQRQ 420

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            I  I RS + L  ++ ++LD S +  G+  L    + L+ +V +    L   A  + I 
Sbjct: 421 AIDAIDRSARSLSRMVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGIT 480

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +    +     V  D + +RQ++ NLLSNA KFT  GGRV V +   + R   +S+ D G
Sbjct: 481 LETHCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGGRVTVALSRENAR-ALLSVTDTG 539

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            G+A   +P V  +F +   +  S  +G+GLGL I + I   HGG   + S     G   
Sbjct: 540 QGVAPEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHIAELHGGSARVTSDGTGHGTTF 599

Query: 469 IAILPN 474
              LP 
Sbjct: 600 EVALPA 605


>gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
 gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
          Length = 771

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
 gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
          Length = 770

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 361 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 420

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 421 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 476

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 477 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 536

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 537 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 595

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 596 GKVEAASAGKNRGTTFAITLPA 617


>gi|121535018|ref|ZP_01666836.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121306431|gb|EAX47355.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 369

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 163/367 (44%), Gaps = 16/367 (4%)

Query: 117 IGLCWTLLTLVEP-GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
            GL ++L+ +     ++   Y      +  L  L +  + + +   ++  +     +A  
Sbjct: 9   TGLMFSLVAITVFTMSYLANYQMEVHFSAYLNQLLLQNMLSNISMGSMMGTPEQAFLANI 68

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ-----AEKDDLIAELEV 230
            ++++      + +  + + AL+    +      +  + +         + +       +
Sbjct: 69  HRSLVWYGAGILVIGLVASYALARSITVPLRRLSAATEAIEQGKLGHTVDINSNDEVGRL 128

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A + +  +R  AE  N  + R LA ++HEL+TPL+ I G  E +    +     ET  E 
Sbjct: 129 ANTFNRMSRALAEN-NRLRKRLLADIAHELKTPLSVIQGNLEGMLEGVV-----ETSPEQ 182

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  ++    +L  +INE+ +LS  EAG+  L      +  +V   + ML+  A EK I++
Sbjct: 183 LHSLYEETVYLNKIINELRELSLAEAGQLTLERQLTDVNPLVSRAVNMLKPLADEKKIKL 242

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRGQYISIKD 407
              +   +  +  D   + QV+ NLLSNAV++T   G++      V   S     ISI+D
Sbjct: 243 ACSLQ-HVPEISIDVMRINQVLYNLLSNAVRYTPANGKIEAVTAVVNLDSREYVAISIRD 301

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GI+  ++P +   F +   A      G G+GL I + ++  HGG+   +S+L +G E
Sbjct: 302 NGKGISADDLPHIFEHFYRADFARDRKSGGSGIGLAIVKQLVELHGGKVEAKSELGKGSE 361

Query: 468 VIAILPN 474
               LP 
Sbjct: 362 FTVYLPV 368


>gi|193066318|ref|ZP_03047368.1| TMAO reductase system sensor TorS [Escherichia coli E22]
 gi|194428476|ref|ZP_03061016.1| TMAO reductase system sensor TorS [Escherichia coli B171]
 gi|192926025|gb|EDV80669.1| TMAO reductase system sensor TorS [Escherichia coli E22]
 gi|194413528|gb|EDX29810.1| TMAO reductase system sensor TorS [Escherichia coli B171]
          Length = 904

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP        P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPEPKTANQA 666


>gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 364

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 15/274 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDD----LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                   + I+    EK      L+          +E   +AE+    KS FLA++SHE
Sbjct: 94  GEGWKWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKAEKSERLKSSFLANISHE 153

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +R PLNAI+GFS ++  E  G L     +EYI  I  + + LL ++N++LDL+++E+G  
Sbjct: 154 IRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLESGTM 209

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
                   L  ++ E +   Q++     + +          + +D   ++QV+ N ++NA
Sbjct: 210 TFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPASLDSFLLRSDRIRLKQVLGNFITNA 268

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +K+T+IG  +             +S+ D G G++E     V   F +G    ++ +QG+G
Sbjct: 269 IKYTSIGSIIL--SYQAMENEVLLSVTDTGEGMSEEIKLHVFDRFYKG----RNQKQGIG 322

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           LGL I Q+I+   GG+  + S+  +G      LP
Sbjct: 323 LGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|237805514|ref|ZP_04592218.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026621|gb|EGI06676.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 405

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 70  ISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 129

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 130 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGLA 185

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++ +   +D  + + V  D    +Q++ NL+SNA+KFT  G  ++ +  G T+    
Sbjct: 186 RQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQDGQVKISLQAGDTAAPQQ 245

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++ ++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 246 LHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNLQL 305

Query: 459 RSKLREGVEVI 469
            S   +G  V 
Sbjct: 306 DSAPGQGTRVS 316


>gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
          Length = 769

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 476 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 536 ERHDAQ-AKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616


>gi|119351155|gb|ABL63472.1| ethylene receptor [Coffea liberica var. dewevrei]
          Length = 740

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 127/286 (44%), Gaps = 31/286 (10%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ E        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 307 SHAAILEESMRARDLLME---QNVALDRARREAETAVRARNDFLAVMNHEMRTPMHAIIA 363

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L      L 
Sbjct: 364 LSSLLQETELTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLH 419

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR 388
            + +E + +++  A  K + +   +   L      DEK + Q++LN++ NAVKF+  GG 
Sbjct: 420 GLFKEVLNLIKPIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGG- 478

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           + ++                             + +KD G GI+  +IP + T F Q   
Sbjct: 479 ISISASVAKSDSLRDPRAPDFFPVLSDNHFYLRVQVKDTGSGISPQDIPKLFTKFAQSQS 538

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE--VIAIL 472
                  G GLGL I +  +    G   + S+ L +G     +  L
Sbjct: 539 LAAKNSGGSGLGLAICKRFVNRMDGHIWLESEGLGKGCTAIFMVKL 584


>gi|332976591|gb|EGK13432.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 407

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            A+ +F+A  SHELRTPL  I   +E++          +   + I  I+R  + +  L+N
Sbjct: 181 EAQQQFVADASHELRTPLTVIQTRTELLLQHPH--QTVQEKSDDISAIYRETRRVRRLVN 238

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           ++L L+R ++ + EL+     + ++++E         + + I +   I+ +L     D +
Sbjct: 239 DLLTLARSDSNQLELNRQTFDVSELLKEVADHFTELTELEGITLQTGIESNLLC-NGDRE 297

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q+++ LL NAVKFT+ GG +H T     G   +I +KD G GI+  ++P +   F +
Sbjct: 298 RIHQLLVILLDNAVKFTSSGGTIHFTC-RKKGPQLFIEVKDTGTGISGKDLPRIFDRFYR 356

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G  A    + G GLGL IA+ I+  HGG   ++S   EG      L
Sbjct: 357 GDRARGRTDGGTGLGLSIAKWIVDKHGGNISVKSNS-EGTTFTVKL 401


>gi|302188712|ref|ZP_07265385.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 783

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKASNLRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGMLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHRDAGSGENRVRIEVRDTGIGIAQDAQTRIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 GTGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 517


>gi|289649401|ref|ZP_06480744.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 782

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTEHLNELENIVSARTNELKASNIRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV V +             I ++D G GIA+     +   F Q   AI     G
Sbjct: 421 FT-RFGRVDVRLTHHKDVSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYGG 479

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 TGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 516


>gi|81246095|gb|ABB66803.1| sensor protein torS [Shigella boydii Sb227]
 gi|320187205|gb|EFW61906.1| Sensor protein torS [Shigella flexneri CDC 796-83]
 gi|332093573|gb|EGI98631.1| TMAO reductase sytem sensor TorS [Shigella boydii 3594-74]
          Length = 904

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|154246369|ref|YP_001417327.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154160454|gb|ABS67670.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 945

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 8/322 (2%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
           A          L   +A            +     ++       ++    LE+A +    
Sbjct: 619 AGAVGSASARVLVAAVAEEEPLSPADVMEILNEASQLRVYALALEEKSRSLEIASAELSA 678

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              +    +  K  F++S++HELRTPL AI   SE++       +     +E++  I   
Sbjct: 679 ANAQLRTLDELKDDFVSSVTHELRTPLTAIRALSELMLDAP--DMEEAQRQEFLAIIVGE 736

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  L+N++LD++++E+G  E   + + L  +VR+ +      A+ +  EI  +   +
Sbjct: 737 SERLGRLVNQVLDMAKLESGHGEWHNADVDLRRLVRDAVTATTELARSRGAEIVFEAPET 796

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +  + AD   + QV+LNL+SNAVKF    GGRVHV++    G G  + +KDNGPG+ E E
Sbjct: 797 VPLLRADPDRLTQVVLNLISNAVKFVPAEGGRVHVSL-HVEGDGLVVRVKDNGPGVPEAE 855

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             T+   F QG  A+     G GLGLPI++ I+ + GG+  + ++   G      LP   
Sbjct: 856 RDTIFEKFRQGGDALTRP-PGTGLGLPISRRIVDHFGGRMWLENQDGSGACFAFRLPFQP 914

Query: 477 ---VLNFIPEDNHESTQYKCYA 495
                   P  +  + + K  A
Sbjct: 915 DAGAEGPRPAASEPAGKVKALA 936


>gi|332527595|ref|ZP_08403642.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
 gi|332111998|gb|EGJ11975.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
          Length = 1425

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 121/257 (47%), Gaps = 9/257 (3%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
            + +    A L+ A +     R RAE  + +KS FLA++SHE+RTP+NAI+G + ++  + 
Sbjct: 749  SAQKRAEAGLQRANAELVVERDRAEAASRSKSAFLANISHEIRTPMNAIIGLAHLMLRDA 808

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                  +T +E +  I    QHLL ++N++LDLS+IEAGR EL     SL  ++      
Sbjct: 809  HA----DTERERLLKIRGQAQHLLQILNDVLDLSKIEAGRLELEAIPFSLDTLLARAFQT 864

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   AQ K +E+    D     +  D   + Q +LNLLSNAVKFT   G V +       
Sbjct: 865  VATEAQRKGLELVLDTDAVPDRLVGDPTRLLQALLNLLSNAVKFTEK-GWVRLQARQADH 923

Query: 399  RG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                     ++ D G GI    +  +  +F Q   +      G GLGL + + + +  GG
Sbjct: 924  AEGRVLLRFTVTDTGVGIPPDRLGALFQAFEQVDSSTSRRHGGTGLGLALTRHMASMMGG 983

Query: 455  QFLIRSKLREGVEVIAI 471
            +    S    G      
Sbjct: 984  EVGADSTPGAGSCFWFS 1000


>gi|329765398|ref|ZP_08256978.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138304|gb|EGG42560.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 606

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 11/316 (3%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEV 230
           +    ++    +   +  ++  +L     IT  L +        + E    D++   ++ 
Sbjct: 291 IVQVLLVVDIAIFFLVLFIIRQSLLPLGLITNALTEIKEGAYGRKIEYEKSDEIGNLVQT 350

Query: 231 AKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
              +S+   ++ E     ++AK  FLA ++HEL+TPL  I G+S+++  E +G L +   
Sbjct: 351 FNVMSNTILEKEELAKKTDIAKDEFLAMITHELKTPLVPIQGYSDILLSEHLGKLTD-RQ 409

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           KE I  I  S + LL LI+++LD  ++E G+  +     ++ + + E I     +AQ+ N
Sbjct: 410 KERINIIKSSSETLLALISDLLDAQKLELGQLRMKMETNNIKETITEVIESFTPQAQKNN 469

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNA-VKFTAIGGRVHVTVGWTSGRGQYISIK 406
           I+    +      V  DE  ++QV+ NL+ N+ +      G + +T+     +   +S+K
Sbjct: 470 IKFISNLKD--VYVEYDEDRIKQVLSNLIKNSMIAVEPEKGVIEITM-VNYPQTVQVSVK 526

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GI   +   +   F Q    +   + G GLGL I + I+  HGG+   +S  R+  
Sbjct: 527 DNGIGIPADKQENLFKKFYQVDTTLTREKSGSGLGLAICKGIIDTHGGEIFCKSIPRQET 586

Query: 467 EVIAILPNTRVLNFIP 482
                LP        P
Sbjct: 587 VFTFTLPKKSESKKSP 602


>gi|225863918|ref|YP_002749296.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225785678|gb|ACO25895.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 353

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 141/350 (40%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + +    
Sbjct: 13  LKVTGVIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILLWIFI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S   +G E    +P
Sbjct: 303 FFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESIEGQGTEFSVRIP 352


>gi|66046841|ref|YP_236682.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257548|gb|AAY38644.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 796

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 258 RLTDHLNELENIVSARTNELKASNLRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 317

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 318 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 373

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 374 ERIPFDLGMLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 433

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 434 FT-RFGRVDVRLTHHRDASSGEHRVRIEVRDTGIGIAQDAQTRIFQPFTQAETAITRQYG 492

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 493 GTGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 530


>gi|315648818|ref|ZP_07901913.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315275786|gb|EFU39138.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 604

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 25/247 (10%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E     +S F+A++SHEL+TPL A+ GF+E +     G  + +T + ++  I+   +
Sbjct: 362 RRLE---RMRSEFVANVSHELKTPLAAVKGFAETLLGG--GVTDEKTSRSFLQIIYDESE 416

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI +IL+LS+IE+ R ++  S I L         M++  A++K I +   I   L 
Sbjct: 417 RLNRLIGDILELSKIESKRIQMDYSPIHLSVFFDTISEMMRTVAEKKRITLELDIPEEL- 475

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAE 414
            +  DE  +RQ+ +NLLSNA+ +T  GGRV +T        ++       + D+G GI +
Sbjct: 476 FMEGDEDKLRQIFMNLLSNAINYTQEGGRVKLTAREQHNNGSADDMVEFVVTDSGIGIPK 535

Query: 415 GEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            ++P +   F +   A                    I + ++  H G   + S+L  G  
Sbjct: 536 KDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGTIKVESELGTGSS 588

Query: 468 VIAILPN 474
            I  LP 
Sbjct: 589 FIIDLPV 595


>gi|312962944|ref|ZP_07777430.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
 gi|311282713|gb|EFQ61308.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
          Length = 747

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 13/338 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S               L      ++ ++K 
Sbjct: 416 ASGVLAMSLPKPVDNGVLWFRPEVKENINWSGDPEKPLNLESSDAGLRLRPRTSFEIWKV 475

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEEENLAKSRFLASMSHELRTPLNA 266
            +  +S +    DL A  ++ +S    D  R+  R ++   A+   +A +SH+LR P+  
Sbjct: 476 VMAGISTKWSHGDLFAANDLRRSALENDLARQVKREQQAVRARDDLVAVVSHDLRNPMTV 535

Query: 267 ILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      I  + ++   +  L+ ++LD S+IEAGRY +   
Sbjct: 536 ISMLCGMMQKAFSSEGPHTSRRISSAIDTMQQAAGRMNVLLEDLLDTSKIEAGRYVVKPV 595

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           A+ +  +  E   +L   A EK I++    +P L  +  D + + QV+ NL+ NA+KFT 
Sbjct: 596 ALDVSQMFEEAYSLLAPLAMEKGIDLSFNAEPGL-QINGDPERLFQVLSNLIGNAIKFTP 654

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + ++   ++G     S++D+G GIA  ++P V   +       ++   G GLGL I
Sbjct: 655 RQGNIGISA-MSNGEEIVFSVRDSGEGIAPEQLPYVFDRYW---TQTENNPTGSGLGLYI 710

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            Q I+  HGG+ +  S++  G E    +P  +VL   P
Sbjct: 711 TQGIVQAHGGKIVAESEVGRGSEFRFTVP--KVLESSP 746


>gi|298386785|ref|ZP_06996340.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298260459|gb|EFI03328.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1382

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 149/310 (48%), Gaps = 10/310 (3%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             S +V ++++  +     +++ Y+ Y ++   V IL  +  K+ ++  L  A  L +  +
Sbjct: 797  WSGYVRELTVVVLPPFWATWWAYLLYIIWVLVVGILIYRTTKNRML--LRNALRLREIEK 854

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             +AEE N AK +F  +++HEL TPL  I    + ++ +        ++ +    ++ + Q
Sbjct: 855  AKAEELNHAKLQFFTNITHELLTPLTIISATVDELKTQA------PSHNDLYTVMNSNIQ 908

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             L+ L+ +IL+  + E G  +L  S   + D V+      Q   +++ I      DP   
Sbjct: 909  RLIRLLQQILEFRKAETGNLKLRVSPGDIADFVKRETESFQPLVKKRKIHFSVLCDPEAI 968

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIP 418
              + D   + +++ NLLSNA K+   GG + VT+ +        + +KDNG GI++ +  
Sbjct: 969  IGYFDTDKLDKILYNLLSNAAKYNKEGGFIQVTLSYDENKDFVLLKVKDNGKGISKEKQK 1028

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   F +G    K    G G+GL + + ++  HGG   + S++ +G E I  +P  R  
Sbjct: 1029 MLFKRFYEGDY-RKFNTIGTGIGLSLTKDLVELHGGTISVESEVDQGTEFIVRIPIDRSY 1087

Query: 479  NFIPEDNHES 488
                + ++E+
Sbjct: 1088 YEEEQIDNEA 1097


>gi|255526291|ref|ZP_05393207.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296185215|ref|ZP_06853625.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255510004|gb|EET86328.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296050049|gb|EFG89473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 474

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 150/303 (49%), Gaps = 8/303 (2%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           +A A      +   L +   + L  +     L  E+     L +E+     E N  K++ 
Sbjct: 161 VAAAAEVLFIVANALSQIGYEELKLKRNSKSLENEVIKKSLLLEESN----EYNNTKTQL 216

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPL---NNETYKEYIGDIHRSGQHLLNLINEIL 309
            +++SHEL+TP+N I    +++E           ++ + +Y   + ++   L+ LIN ++
Sbjct: 217 FSTISHELKTPVNIIYSSLQLLESLYKDSSFTYTDDMFLKYSKVMKQNCFRLIKLINNLI 276

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           D+++IE G + L+    +++ ++ +  + +   A+ K+I+I    +        DE+ + 
Sbjct: 277 DMNKIELGFFTLNLKNKNIVKVIEDVTLSIVEYARLKDIDIIFDTEIEEKITAFDEEKIE 336

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           +++LNLLSN++KFT  GG+++V + +       IS+KD G GI E     +  +F Q   
Sbjct: 337 RIMLNLLSNSIKFTNQGGKIYVNI-YDEDENILISVKDTGVGIPEDMFDKIFDTFTQVDA 395

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           +++   +G G+GL + +S++  H G+  ++SK+  G E +  LP   + +       E+ 
Sbjct: 396 SLRRNAEGSGIGLSLVKSLLKMHNGEIAVKSKVGVGSEFMVKLPVKLIESKSNLHEQEAG 455

Query: 490 QYK 492
             K
Sbjct: 456 DLK 458


>gi|228933287|ref|ZP_04096143.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826448|gb|EEM72225.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 293

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 235 IFERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|332140179|ref|YP_004425917.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550201|gb|AEA96919.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 433

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/440 (21%), Positives = 164/440 (37%), Gaps = 23/440 (5%)

Query: 49  SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108
           S +  +  L+V  +  W+  + +F +    TL +   N     K+        ++    +
Sbjct: 10  STLRLVLFLVVFALVGWYLDDMLFAVAIGATLLL-LFNYWHLYKLNRWLWHSRKMSPPTV 68

Query: 109 WLLVGQIAIGLCWTL-------LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
             +   I  G+ +           L E      E       A +++      +    L  
Sbjct: 69  RGVWEHIYEGIYYLQRRNRNKRKELGELVKRFREGSEALPDAAVVVDAKACIIWCNRLAR 128

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
                 +P         ++                       T        +I+    E 
Sbjct: 129 LDLGLKWPQDSGRRIDNLLRHPEFIQYFHAGNYKYPIEVPSPTNPNKTFEYRIMPYGEEH 188

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             LIA      S  +E RK           F+A++SHELRTPL  I G+ E++    +  
Sbjct: 189 LLLIARDITRVSQLEEMRK----------DFVANVSHELRTPLTVINGYLEIL---PVDE 235

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            ++    + + ++      + NLI ++L LSRIEA    + E+ +++  ++ +     Q 
Sbjct: 236 ESDPFMHKAMKEMTSQTHRMQNLIEDLLVLSRIEASSERIYENVVNIPTVLAQVEREAQA 295

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +EKN +I   ID  L  V+  E  +R    NL+ NAV +T  GG ++V         Q
Sbjct: 296 LNKEKNHKINFHIDEEL-YVFGVETELRSACSNLVFNAVHYTPAGGEINVYWRRKPNGAQ 354

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S+ DNG GI    +  +   F +   A      G GLGL I + ++++H  +  I S 
Sbjct: 355 -FSVVDNGDGIEPNHLNRLTERFYRVDKARSRKTGGSGLGLSIVKHVLSHHNSRLEITST 413

Query: 462 LREGVEVIAILPNTRVLNFI 481
           L EG     +L    +   +
Sbjct: 414 LGEGSNFSFVLDKELIAEQL 433


>gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 417

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L+ + HE RTPL AI+GF+ ++  E  G L N    +Y+     S +HLL+L+N+ LDLS
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKL-NPKQHQYVQGTLNSAEHLLSLVNDFLDLS 248

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +I+A   EL    +++ D+    I M+Q +A+EK + +   ID  +   + D++  +Q++
Sbjct: 249 KIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQIL 308

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NLLSN VKFT   G V + V  T  +    S+ D G GI   +   +   F Q S    
Sbjct: 309 INLLSNGVKFTPK-GSVTLAVKAT-DKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPS 366

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            AE+G GLGL +++ +   HGG   + S    G    AILP  
Sbjct: 367 FAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLK 409


>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1353

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P ++ +    I       I L   +      F +  + + KS    L    E+ D   
Sbjct: 771  TVPTMLEIIVLPIWYKTWWAIVLFLAIFIGFITFVFRFFWMRKSMEAELEI--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    E +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILTPLQ----EIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKAKKENAHQLIQDNFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      +        D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNWLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|154498428|ref|ZP_02036806.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC
           29799]
 gi|150272496|gb|EDM99681.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC
           29799]
          Length = 497

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 127/317 (40%), Gaps = 7/317 (2%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + + I  +      L  +   +      +   L + N   L  +        EL+     
Sbjct: 185 TLRPIQDLAAAAARLNTVSGMSPEELQALAGKLDQINATHLDTRISVTGQQKELKTLAEA 244

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
            +    R  E   ++ RF++  SHELRTP+  I G++ ++     G  + ET +E I  I
Sbjct: 245 INAMLDRINEAYRSQMRFVSDASHELRTPIAVIQGYANMLNR--WGKDDPETRQEAIDAI 302

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
                 +  L+ ++L L+R +     +      L  +  E +   ++  Q          
Sbjct: 303 SAEAASMKELVEQLLFLARGDNESMHVEFEDFDLTAMAAEVLRETEMIDQTHQFSARW-- 360

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                +V AD   ++Q +  L+ N++K+T  GG + + V         ++++D G GI  
Sbjct: 361 -EENVTVHADVGLIKQAMRILVDNSIKYTPAGGCIRLGVEKR-NGTARLTVQDEGQGIDA 418

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +P +   F +   +      G GLGL IA+ I+  HGG F + S+   G  +  +LP 
Sbjct: 419 ASLPHIFERFYRTDQSRARQTGGTGLGLAIAKWIVDRHGGWFEVTSREGIGTRMTVVLPL 478

Query: 475 T-RVLNFIPEDNHESTQ 490
              V   +P    E  +
Sbjct: 479 APPVQQSVPAQPAEDKK 495


>gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Sodalis glossinidius str. 'morsitans']
 gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str.
           'morsitans']
          Length = 958

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 9/273 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+ A + + +SL D     AE+ N AKS FLA++SHELRTPL  I+G  ++++ + +   
Sbjct: 448 DVSARVRMEESLQDMA-AVAEQANQAKSMFLATVSHELRTPLYGIIGNLDLLKTKAL--- 503

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +     +  +  S   LLN+I++ILD S+IE+ + ++     S  + V   +      
Sbjct: 504 -PDGVDRLVMAMSNSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLSL 562

Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             +K + ++  IDP +  S+  D   ++QV+ NLL+NA+KFT   G + VTV +      
Sbjct: 563 VVKKRLGLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFT-RSGNIVVTV-YCRDGYL 620

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D G G+   E+  +   F Q     +   QG GLGL I + ++    G   + S+
Sbjct: 621 LFSVRDTGVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESE 680

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494
              G      LP  + +   P +  ++    C+
Sbjct: 681 RGLGSRFTIRLPLYQAV-TRPMEKQDAAGNTCW 712


>gi|121605100|ref|YP_982429.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594069|gb|ABM37508.1| multi-sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 448

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 7/244 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    +  F+A++SHE+RTPL  + GF E ++     PL       Y+  + +  Q 
Sbjct: 206 ALEQAEAMRRDFVANVSHEIRTPLTVVSGFIETLQT---FPLKKPERDRYLCLMAQQSQR 262

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR---AQEKNIEIFQKIDPS 357
           +  L++++L LSR+E      ++   +   +  +C    +        +  ++  +  P+
Sbjct: 263 MQTLVDDLLTLSRLEGSPLPGAQEWSATKSLFAQCEQEARALSGVIAPQGHQLVFEPGPA 322

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +   ++ +   + NL++NAV++T   G + V+    +       ++D+GPGIA   +
Sbjct: 323 -CEIAGIQREICSALSNLVTNAVRYTPEAGLIRVSWTLLADGRGEFRVRDSGPGIAPEHL 381

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   +      G GLGL I + +   HG Q  I S++ +G     I P  RV
Sbjct: 382 PRLTERFYRVDRSRSRETGGTGLGLAIVKHVAQRHGAQLRIESQVGQGSCFSIIFPAARV 441

Query: 478 LNFI 481
              +
Sbjct: 442 RQPV 445


>gi|331672528|ref|ZP_08373317.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280]
 gi|331070171|gb|EGI41537.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280]
          Length = 973

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 390 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 449

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 450 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 509

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++   +         ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 510 MSHEIRTPLYGILGTAQLLADNSALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 565

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 566 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTALMGDPRRIRQVI 625

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 626 TNLLSNALRFTDE-GHIILR-SRTDGELWLVEVEDSGCGIDPTKLAEIFQPFVQVSGKR- 682

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 683 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 735


>gi|302384892|ref|YP_003820714.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302195520|gb|ADL03091.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 378

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 152/353 (43%), Gaps = 16/353 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLP------YAVFLSFFPVVVALSTQAIMSMHVL 185
               Y  +      +  ++  +L    +         V +     VV +    +  + + 
Sbjct: 15  ANIFYSAVVTVLIEIFLVTNVSLVAAYMRNTQRDNAFVEMLTSFDVVVILIYVVFGIGIF 74

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK---DDLIAELEVAKSLSDETR--- 239
            ++   +   ++ + + I+  +   +   L+   +    D+          + ++ R   
Sbjct: 75  TVTFLLLQEKSMRYISRISDAMQSISHGDLNITVDIEGDDEFSVMAASLNKMVEDLRGLM 134

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            +  E    K+  + +++H+LRTPL +I+G+ E++  E    L+ E  K+YIG  +   +
Sbjct: 135 DKEREAERTKNELITNIAHDLRTPLTSIIGYLELLSGE--TKLDPEVQKKYIGIAYVKTK 192

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI ++   +++  G+  +  S + ++ ++ + +        +KN+    + +  + 
Sbjct: 193 RLEKLIEDLFGFTKLNYGKISMHVSKVDVVKLISQLLEEFYPSFVDKNLSYELQSNVPVQ 252

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           ++ AD   + ++  NL++NA+K+ A G R+ V V  +      + + + G  I E E+P 
Sbjct: 253 TISADGNLLARLFDNLINNAIKYGADGKRILVKVHGSEE-LVTVQVINYGYVIPEEELPL 311

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +  +   G GLGL IA++I+  HGG   + S L  G      L
Sbjct: 312 IFNKFYRVEHSRSTNTGGTGLGLAIAKNIVDMHGGTIEVSSDL-SGTVFTVKL 363


>gi|269215795|ref|ZP_06159649.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269130745|gb|EEZ61821.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 650

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 200 FTYITYHLFKS----NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           F  +   L +     + ++ +   E   L  +L            +  EE+  K+ F A 
Sbjct: 359 FDNMARQLQRLYCNLSEEVENQTCELQKLNEKLAHQSDELKHAYDKLSEESAYKNEFFAI 418

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPL +++ ++  ++         E   + +  I  S   LLNL+N IL LS+ E
Sbjct: 419 VSHELRTPLTSVMAYARRLKNSEGIC---ERDLDSVIQIETSANVLLNLVNNILTLSKAE 475

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
           AG+  L    I  +++++     L+  A  KNIE+    D ++    AD + MR+VI NL
Sbjct: 476 AGKNTLELGPIDFVELLKFVEKTLRPLAANKNIELVSHADANVPIAMADWEKMRRVIDNL 535

Query: 376 LSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI-AIKS 433
             NA+K+T  GG V V            I + DNG GI   +  ++  ++ Q     +  
Sbjct: 536 ADNAIKYTHEGGSVDVHAWLDENENEIVIDVVDNGIGIDPKDQDSIFEAYEQARRMPVSH 595

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
             +G GLGL + + ++  H G   ++S  ++G      +P    ++   +D  E
Sbjct: 596 HIRGTGLGLAVVKELVRLHEGSVSVQSTPKQGSTFTVRIPTIAAVSRDIDDEEE 649


>gi|298488052|ref|ZP_07006089.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157331|gb|EFH98414.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 782

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 122/277 (44%), Gaps = 9/277 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTEHLNELENIVSARTNELKASNIRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           FT   GRV V +      +      I ++D G GIA+     +   F Q   AI     G
Sbjct: 421 FT-RFGRVDVRLTNHKDVSGENRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYGG 479

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 TGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 516


>gi|170681062|ref|YP_001744182.1| hybrid sensory histidine kinase TorS [Escherichia coli SMS-3-5]
 gi|170518780|gb|ACB16958.1| TMAO reductase system sensor TorS [Escherichia coli SMS-3-5]
          Length = 900

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 153/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++           T ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----TQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|167842294|ref|ZP_02468978.1| probable two-component sensor/regulator [Burkholderia thailandensis
           MSMB43]
          Length = 928

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
                  +V     G  W L  +      T + + + +       +    L   +     
Sbjct: 267 RRVNNQYVVCMPLDGPHWQLAVIFPAAAVTDKVMILLRQTVPWTLVMQLWLIVVVFQILQ 326

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           +    P+ + + T            L       L         L  +        A    
Sbjct: 327 WQLGRPLRLIVETIDAQRDGDWGRRLPARHDDELGRIARAYNTLLST------LNAYHKT 380

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L  +++      +E ++ AE  N +KS  +AS+SHE+RTPLN I+G   ++    + P  
Sbjct: 381 LENKVDERTRELNEAKRMAESANHSKSEHIASISHEIRTPLNGIMGALALLARSQLQP-- 438

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +E +G   +S  +LL ++N +LD SRIEAG  EL+     L+ ++ + ++ + LRA
Sbjct: 439 --RQQELVGVAQQSSGYLLGIVNNVLDYSRIEAGHLELAYEQTQLLPLLDQAMLTIHLRA 496

Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            EK++ +   + P +   +W D   +RQ+++NLL NAVKFT   G + + V     R   
Sbjct: 497 NEKHLTLSTFVAPDVPQQIWLDALRVRQILINLLGNAVKFT-DFGSIRLVVERRGNRLAM 555

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D G GI       +   F Q          G GLGLPIA  +     G+ L+ S+L
Sbjct: 556 I-VEDTGKGIPPSYQLDIFKPFVQVRAHDS----GNGLGLPIASRLANLMNGEILMSSQL 610

Query: 463 REGVEVIAILPNTR 476
             G +   +LP  R
Sbjct: 611 GRGTQFTVLLPLQR 624


>gi|145633773|ref|ZP_01789497.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 3655]
 gi|145635654|ref|ZP_01791351.1| GTP cyclohydrolase II [Haemophilus influenzae PittAA]
 gi|144985344|gb|EDJ92174.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 3655]
 gi|145267127|gb|EDK07134.1| GTP cyclohydrolase II [Haemophilus influenzae PittAA]
          Length = 598

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAILALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ IAE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEIAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A++KN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKQKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|27367859|ref|NP_763386.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27359432|gb|AAO08376.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1217

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                 Y      +S              +   +  ++     +  A+    A+ RFLA+
Sbjct: 621 LQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIAAQHEAQSAVKARERFLAT 680

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHELRTPL A  G  +++   +     +E  KE +    +S  HL  L++E+LD S++E
Sbjct: 681 MSHELRTPLAATYGLLDLVATHS----TSERDKELVLRAKQSLNHLNLLVDEVLDYSKLE 736

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILN 374
           AG  ++  +   L+ ++ + +   + +A  K ++    I P SL     D+    Q++ N
Sbjct: 737 AGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFSLRWAMIDDLRFNQIVSN 796

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+SNA+KFT   G + +T          ++IKD G G+ + ++  +   F Q   +I   
Sbjct: 797 LISNAIKFTEQ-GDITLTAQVV-DERLLLTIKDTGIGMTQEQLANIFKPFVQADDSITRQ 854

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
             G GLGL I + ++   GG   + S L  G +V   LP T      PE
Sbjct: 855 FGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPLTLCEGAYPE 903


>gi|327404292|ref|YP_004345130.1| integral membrane sensor signal transduction histidine kinase
           [Fluviicola taffensis DSM 16823]
 gi|327319800|gb|AEA44292.1| integral membrane sensor signal transduction histidine kinase
           [Fluviicola taffensis DSM 16823]
          Length = 361

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 144/340 (42%), Gaps = 7/340 (2%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
                    +I  +   L   ++ +   +   P +  +   A+ +           +   
Sbjct: 6   PFTIVLLGSVIVGACLTLVLIIVNFFYPIPVGPFISIILFGALATFIAFHFLFREFIYNR 65

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFL 253
           L            S+   +     KD +      +K  S+E +    + +E++  +  FL
Sbjct: 66  LRILYRSIRKGKTSSDDKVYINMSKDVIGNAETDSKKWSEERKSEITQLQEQDKFRREFL 125

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +++HEL+TP+ +I G+   +     G  +++  + ++    ++   + N++N++ +L++
Sbjct: 126 GNLAHELKTPVFSIQGYVLTLLEG--GLEDDKVNRMFLERASKAIDRMTNILNDLDELTK 183

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372
           +E    ++      L ++ +E +  L+LR+QEK+I++    D      V AD   + QV+
Sbjct: 184 LEVNDLKMDLRPFDLKELAKEVLESLELRSQEKHIKLRFAKDYYKEIMVRADRGKIAQVL 243

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NL+SN++ +    G   +           + I DNGPGI   E+P +   F +   +  
Sbjct: 244 TNLVSNSISYGNENGETLIRFYEV-DDLVSVEISDNGPGIEPHELPRLFERFYRVEKSRN 302

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E G GLGL I + I+ +H     +RS +  G      L
Sbjct: 303 RNEGGSGLGLSIVKHILDSHNQTISVRSTIGVGSTFTFSL 342


>gi|224026600|ref|ZP_03644966.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM
            18228]
 gi|224019836|gb|EEF77834.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM
            18228]
          Length = 1342

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 23/310 (7%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
              + + +         +    L  +   A SF+        K   + L+   EK+     
Sbjct: 741  QTISLQIQISTPWYSTIWAWMLYLITIGAGSFWFV----RNKLAKRALALSLEKERF--- 793

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                       ++  EE N AK  F  ++SHE RTPL  I+   + +  E +     + Y
Sbjct: 794  ----------EKQHIEEVNRAKLVFFTNVSHEFRTPLTLIISHLDALLQEQL---PVQLY 840

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             + +  I ++ Q++ NLI E+LD  +       L  ++  +  ++ E  +     AQ++ 
Sbjct: 841  NKLLK-IKQNTQYMTNLITELLDFRKFTQNHVILHLASQDICLMLEEIYLTFTDYAQQRK 899

Query: 348  IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            I+   + +P     W D   M +V  NLLSNA K+T  GG + +     + +   I   D
Sbjct: 900  IDYTFESEPKNILCWIDRTQMEKVFFNLLSNAFKYTPDGGSIRLKACIQANQ-LIIQTTD 958

Query: 408  NGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            +G GI E E   +   F QG     +    G G+GL + ++I+  H G   + S L +G 
Sbjct: 959  SGTGIPENEKQRIFERFFQGEDQKGQEKYPGTGIGLALTKNIVEAHHGTITVSSILHQGS 1018

Query: 467  EVIAILPNTR 476
                 LP  +
Sbjct: 1019 TFTVTLPLEK 1028


>gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri
           ATCC BAA-895]
 gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895]
          Length = 778

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 8/254 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTS----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +         L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLDPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDVLHFDVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSQPGKGSVFTLTVHAPA 507

Query: 477 VLNFIPEDNHESTQ 490
           V   + ED  E   
Sbjct: 508 VAEEV-EDTLEEND 520


>gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1645

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 32/251 (12%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            KS FLA+MSHELRTPLNAILGF++++  +     +N   ++ +  I+R+G+HLL+LIN++
Sbjct: 1153 KSEFLANMSHELRTPLNAILGFTQIMSHDKTLSKDN---QQNLTIINRAGEHLLDLINDV 1209

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367
            L++S+IEAGR  L+ ++  LI ++     M+Q RA  K + +  +  P+++  + ADE  
Sbjct: 1210 LEMSKIEAGRTTLNINSFDLIHLLDNLQEMMQGRATAKGLHLKFEYAPNIAQHIQADESK 1269

Query: 368  MRQVILNLLSNAVKFTAIGGRVHVTVG--------------------------WTSGRGQ 401
            +RQV+LN+L NA+KFT   G + + V                            T+ +  
Sbjct: 1270 LRQVLLNILGNAIKFTET-GSIILRVKMGTGDWGLGTEEDTKTHLSIPNTQSPITNPQSL 1328

Query: 402  YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
               I+D G GI + E+  +  +FGQ     KS  QG GLGL I++  +   GG   + S 
Sbjct: 1329 IFEIQDTGIGICDDEVCVLFEAFGQTEAGRKSQ-QGTGLGLAISRKYVQLMGGDISVSSA 1387

Query: 462  LREGVEVIAIL 472
            +  G      +
Sbjct: 1388 VGVGSTFSFQI 1398


>gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 637

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET---YKEYIGDIHRSGQHLLNL 304
           AK++F+ ++SHELRTPLN IL   +V++L        E    Y++Y   + ++G  LL +
Sbjct: 377 AKTQFMGTISHELRTPLNIILSALQVMDLYANYGDLEEKCRVYEKYSVVMKQNGYRLLKM 436

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN  +D+++IE G  +L+    +++ IV +  + +    ++K   I    D     +  D
Sbjct: 437 INNFMDITQIEDGARKLNFVQGNIVTIVEDVTLAVAAFLKDKGKNIIFDTDVEEKIMIFD 496

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           ++ + +++LNLLSNAVKFT     + V +       Q IS++DNG GI E +   +   F
Sbjct: 497 KEKIERIVLNLLSNAVKFTGKDANIRVAIHDVGSNIQ-ISVEDNGMGIPEDKKKMIFERF 555

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            Q         +G G+GL I + ++  H G   ++SK+  G E    LP  +
Sbjct: 556 FQLDKTFTRKNEGSGIGLSIVKLLVELHDGTIEVKSKVGIGSEFTVKLPVRK 607


>gi|284803022|ref|YP_003414887.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284996163|ref|YP_003417931.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
 gi|284058584|gb|ADB69525.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284061630|gb|ADB72569.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
          Length = 459

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E +K       ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASELKK----SEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L +  R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT   G + + + +  G   ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHL-YEEGTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|229160849|ref|ZP_04288839.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803]
 gi|228622586|gb|EEK79422.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803]
          Length = 483

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 8/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
            L   +   F   V +L    I++  +L   ++  +   L      T  + K ++     
Sbjct: 163 PLEEMIREFFPYFVFSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVK 222

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              + E  +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I
Sbjct: 223 PLAKDEIGELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGI 282

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +         E   +Y+  I+     +  LI+E+   S+++          + +   + +
Sbjct: 283 KEGI--ARTPEQLDKYLTIIYHKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSD 340

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVT 392
           CI  LQL  Q+K I +           V  D + +R+VI N++ N+VK+     G + + 
Sbjct: 341 CIEELQLELQDKGIVVRWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIR 400

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  +      I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  H
Sbjct: 401 MTESID-YVTIYIKDNGVGIEEKALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQH 459

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + SK  +G  +   L
Sbjct: 460 GGDIWVESKKGKGTTLAFTL 479


>gi|187730064|ref|YP_001880809.1| hybrid sensory histidine kinase TorS [Shigella boydii CDC 3083-94]
 gi|187427056|gb|ACD06330.1| sensor histidine kinase/response regulator TorS [Shigella boydii
           CDC 3083-94]
          Length = 914

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 745

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 140/301 (46%), Gaps = 19/301 (6%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           L       +   + I       ++  L     +  L  E+     +SD + +RA E +L 
Sbjct: 85  LIARAQEYVGSSSEILGRRRDGSLVPLRLALGRMQLHDEMLYVGFVSDISERRAMESSLR 144

Query: 249 ------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                       KS FLA+MSHE+RTP+NAI+GF+E++    +      T + ++  + +
Sbjct: 145 EAAAQAERAAAAKSTFLANMSHEIRTPMNAIIGFTELLLQSDLTT----TQRNHLSTVRQ 200

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S + LL LIN+ILD +R+E G   L     SL  I  +    L+L AQ + + +      
Sbjct: 201 SSRSLLGLINDILDTTRLEKGGMVLEMIDFSLKGISMQIESSLRLSAQARGLSLTTSYPA 260

Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           +L   +  D   + QV+ NL+ NA+KFT  GG V ++   +      I ++D G G+ + 
Sbjct: 261 NLPEYFLGDPLRILQVLTNLVGNAIKFTERGG-VELSFS-SEDEQVIIMVRDTGIGMTQE 318

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++ ++ T F Q   +I     G GLG  I++ ++    GQ  + S L +G      LP  
Sbjct: 319 QVASIFTPFTQADASISRRFGGTGLGTTISRQLVELMDGQIEVESALGQGSCFRVRLPLA 378

Query: 476 R 476
            
Sbjct: 379 P 379


>gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1042

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 243  EEE-NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E      KS F+A +SHELRTPL +I G+ +++     GPL  E ++E +  +  +   L
Sbjct: 785  ERAVERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGDAGPLAVE-HQELLQIVKSNADRL 843

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-----IDP 356
            L LIN++LD+SRIEAG+  L  + + +  ++R+    L+ +   K+  +         D 
Sbjct: 844  LLLINDLLDMSRIEAGKLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDD 903

Query: 357  SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            +   ++ D   + Q++ N+LSNA+K+T  GG + V +         I+++D G G+   E
Sbjct: 904  APPLMFGDAARVHQILTNVLSNAIKYTPQGGEISVRLSVEPP-WMCIAVQDTGIGLTPEE 962

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
               +   F +          G GLGL I +S++  H G+  + S+   G       P   
Sbjct: 963  QERIFDRFYRVRNRATREASGTGLGLAITRSLVDLHQGRITVESEAGRGSTFRICFPLLT 1022

Query: 477  VLNFIPEDN 485
             L+ I +D 
Sbjct: 1023 SLDGINDDE 1031


>gi|313150084|ref|ZP_07812277.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138855|gb|EFR56211.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 534

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 4/232 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I +  Q +  LI
Sbjct: 2   NQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKHAQQMKLLI 58

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +E+LD  + +    +L  S  SL   + E  +     A +K+I    K+      +W D+
Sbjct: 59  SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDVFIWIDD 118

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             MR+V+ NLLSNA K     G++++    T  +   I++KD+G GI++ E   +   F 
Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQ-VIIAVKDSGNGISKEEQERIFDRFY 177

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           Q     K+   G G+GL + +SI+  H G   + S+L EG   I  LP TR 
Sbjct: 178 QADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPKTRA 229


>gi|119470568|ref|ZP_01613271.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119446269|gb|EAW27546.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 1263

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 10/245 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
           S   + +  AE   LAKSRF+A++SHE+RTPLNA+LG  +++  + +     +   +   
Sbjct: 645 SALTKAKHNAERATLAKSRFIANLSHEIRTPLNAVLGLLDMLIEQGL----TQRQIQQTD 700

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
              ++ Q LL ++N +LD +R+E+ + EL  +  +++++V  C  +     ++K +E   
Sbjct: 701 QAKQAAQSLLLMLNRMLDFARVESAQAELKLAPFTVVELVDICDSLTGPLCEQKGVEFII 760

Query: 353 KIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407
            +DP +  S+  D   ++QV+ NLL+NAVKFT   G + + +    G         S+KD
Sbjct: 761 DVDPLIAPSLICDSIRLQQVLGNLLTNAVKFTH-NGSITLKMELIEGDSTEQAICFSVKD 819

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E +   +  +F QG  +   A QGVGLGL I +  ++  GG+  + S+   G E
Sbjct: 820 TGSGINEADQLRLFDAFTQGDESSTRAHQGVGLGLAIVKHAVSLMGGEIAVNSEKGLGCE 879

Query: 468 VIAIL 472
               +
Sbjct: 880 FYFSI 884


>gi|148657835|ref|YP_001278040.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569945|gb|ABQ92090.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 483

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 20/357 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVV-----ALSTQAIMSMHVLDISLAGMLATALS 198
            ++    +  L   +       S   + +     AL    +++  +  IS   +     +
Sbjct: 130 VMVQGAPVGYLVAQLQRDTALSSAAHLFLDQFNQALIQAGLIAGALGLISGIIVARRLAA 189

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
               + Y   +     L+ +A          VA++ +       E+   A+ R +A ++H
Sbjct: 190 PLNRLAYVAQRLAEGDLTQRAPVAGPSEVASVAEAFNTMA-ASLEQAEQARRRLIADIAH 248

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPL+ I G    +  +       E     I  I+     L  L+ ++ +L+  EAG+
Sbjct: 249 ELRTPLSVIQGNLRALLDDVFPLEKKE-----IATIYDETLLLSRLVADLRELTLAEAGQ 303

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
             L  + + +  I+   + +    A EK + +     P L  V AD   + QV+ NLLSN
Sbjct: 304 LHLYRTPVDVTAIIARSVTLFAAHADEKRVTLQMDCAPDLPPVLADADRIAQVLNNLLSN 363

Query: 379 AVKFTAIGGRVHV--------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           A++ T   G V +            +        + D GPGI   ++P V   F +    
Sbjct: 364 ALRHTPADGIVRIVASHAQQAGCATSDTDMICTRVIDTGPGIPADDLPHVFDRFWRADRG 423

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNH 486
              A+ G GLGL IA+ ++  HGG   + S+  +G      LP  R  +   P D  
Sbjct: 424 RARAQGGAGLGLAIARQLVLAHGGAIGVESEPGKGACFWFTLPVARAPVTSTPLDAS 480


>gi|68248827|ref|YP_247939.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 86-028NP]
 gi|68057026|gb|AAX87279.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 86-028NP]
          Length = 613

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 39  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 98

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 99  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 158

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 159 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 214

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 215 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 273

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 274 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 331

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 332 QLMEGDLTVESERGKGATFHLTL 354


>gi|309972657|gb|ADO95858.1| Aerobic respiration sensor-response protein ArcB [Haemophilus
           influenzae R2846]
          Length = 598

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ IAE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEIAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A++KN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKQKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis
           3_1_12]
          Length = 537

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 10/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 281 EDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 336

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 337 DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQK 396

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFTA  G + +           
Sbjct: 397 NQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAE-GSITLGYRLNGQKNEL 455

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      S  +G GLGL I + I+   GG   + + 
Sbjct: 456 YFFVKDTGIGIPADKAEKVFERFVKL----NSFVKGTGLGLAICRVIIERLGGTIGVDTA 511

Query: 462 LREGVEVIAILPNTRVLN 479
           + EG      LP    + 
Sbjct: 512 VEEGACFWFRLPVQEDIP 529


>gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 544

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                    +   +    +     L  E+          ++ AE  + AKS+FLA+MSHE
Sbjct: 119 LRKAVESARERADRKRRKRGYHQHLEREVAARTRELAMAKEEAELASRAKSQFLANMSHE 178

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPLN I+G ++++     G      ++EY+  + ++GQ LL ++N +LD+S IEA R 
Sbjct: 179 LRTPLNGIIGLTDLLLCAPAGG----DHREYLEMVKQAGQELLTIVNNLLDMSSIEACRL 234

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378
            L E+  SL + V E   +L+++A+ KN++     D  +  ++  D   ++Q++ NLL N
Sbjct: 235 VLRETPFSLRESVGEVKRILEIQARWKNLDFAVFFDDGIPDLFVGDAGRLKQILSNLLVN 294

Query: 379 AVKFTAIGGRVHVTVG---WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           A+K+T  GG V + V     T+G        ++D G GI   +  T+   F  G   +  
Sbjct: 295 AIKYTDKGG-VSLRVSSAPCTAGDTVRLCFYVQDTGVGIDPEKRETIFEPFVLGESFMTK 353

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
              G GLGL I++ +    GG          G     I+   +     P    ++
Sbjct: 354 KSGGAGLGLAISRELARKMGGDVHASRCAEGGSLFECIVELRKCEEEAPVAAEKT 408


>gi|294498882|ref|YP_003562582.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348819|gb|ADE69148.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 459

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 145/324 (44%), Gaps = 12/324 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           AL     P   F     V        ++   VL   ++ ++   +   +     + +   
Sbjct: 139 ALFIQSHPQRQFSVIQDVQNIQLITILLVGIVLFAYVSTIIIKPIKRLSTAMKVVGQGEY 198

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +    A  D++    +    ++ E  K        +  F+AS+SHE+++PL +I GFS 
Sbjct: 199 NVQVEYATNDEIGLLTKNFNQMTKELNK----IETMRQEFIASVSHEIQSPLTSIRGFSA 254

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++ + +   + +   +Y+  I +    L  L + +L L+ +++    L+     L + +
Sbjct: 255 ALKDDIV---SEDKKIQYLTIIEKESTRLSQLSSNLLKLASLDSEHQTLTLQQYRLDEQI 311

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           R  ++ L+ +  +KNIEI   +      + AD+  + QV LNL++NA+K+T   G V ++
Sbjct: 312 RHVVMALEPQWTKKNIEIDLDLSN--VQMEADKDLLEQVWLNLVTNAIKYTPENGLVKIS 369

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +   +     + IKDNG GIAE +   +  SF +   +     +G GLGL I + I+  H
Sbjct: 370 IHQKNE-EIDVKIKDNGIGIAEEDQKYIFESFYKVDKSRT--LKGSGLGLAITKKIVRLH 426

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
            G   + SK  +G      LP  +
Sbjct: 427 EGAIRVESKKEQGSIFTVTLPIQK 450


>gi|296187919|ref|ZP_06856311.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047045|gb|EFG86487.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 691

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    K  F   +SHELRTPL  I    + +  +           + +  I+++   
Sbjct: 430 ELEKITKLKDEFFTIISHELRTPLTIICSSLQ-LAYDVYDKEITPNMDKTLSRINQNCSR 488

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   ++ +    + +    I      A  K IE+    +    +
Sbjct: 489 LLKLINNILDISKAEAGFLSVNNTNFEAVYVSEVIINSSNSYAVSKGIELIFDTNQEEIN 548

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D+    +++LNLLSNA+KFT  G ++ VT+  +     Y+S+KD G GI   +I ++
Sbjct: 549 VRLDKDKYEKILLNLLSNAIKFTPEGKKIIVTLK-SEEEYFYLSVKDFGIGIPGDKINSI 607

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++    +G G+GL + + I+    G+  + S++ +G E I  L
Sbjct: 608 FDRFSQLNSSLTRRAEGTGIGLALVKKIIELMDGEIEVISEVGKGTEFIVKL 659


>gi|296158186|ref|ZP_06841018.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295891522|gb|EFG71308.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 437

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 6/256 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K +  +     E  +  +  F+A++SHEL+TPL  + GF E +      PL+     
Sbjct: 187 ENRKLVLSQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL---PLSEGERS 243

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  + +    + +++N++L L+++E      S+  I +  ++R      Q  + + + 
Sbjct: 244 RYLELMEQQASRMRHIVNDLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAQSLSSDHH- 302

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +I   +D  L +V   E  +     NL++NA+++T  GG + V+     G     S+ D+
Sbjct: 303 KIVFDVDEGL-TVTGVETEILSAFGNLVTNAIRYTPDGGAIRVS-WHAQGGNAVFSVTDS 360

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +IP +   F +   +      G GLGL I + ++  H  Q  ++S+   G   
Sbjct: 361 GLGIPTADIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTF 420

Query: 469 IAILPNTRVLNFIPED 484
               P  R     P  
Sbjct: 421 TVRFPVYRTARRQPAP 436


>gi|255527532|ref|ZP_05394399.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255508770|gb|EET85143.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 557

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 2/232 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    K  F   +SHELRTPL  I    + +  +           + +  I+++   
Sbjct: 296 ELEKITKLKDEFFTIISHELRTPLTIICSSLQ-LAYDVYDKEITPNMDKTLSRINQNCSR 354

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN ILD+S+ EAG   ++ +    + +    I      A  K IE+    +    +
Sbjct: 355 LLKLINNILDISKAEAGFLSVNNTNFEAVYVSEVIINSSNSYAVSKGIELIFDTNQEEIN 414

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D+    +++LNLLSNA+KFT  G ++ VT+  +     Y+S+KD G GI   +I ++
Sbjct: 415 VRLDKDKYEKILLNLLSNAIKFTPEGKKIIVTLK-SEEEYFYLSVKDFGIGIPGDKINSI 473

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              F Q + ++    +G G+GL + + I+    G+  + S++ +G E I  L
Sbjct: 474 FDRFSQLNSSLTRRAEGTGIGLALVKKIIELMDGEIEVISEVGKGTEFIVKL 525


>gi|221639331|ref|YP_002525593.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221160112|gb|ACM01092.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 346

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A+LGF E ++       +      ++G + R    + 
Sbjct: 110 EQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAGRMN 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E+      ++ + +  ++ + I  L+  A+   +EI ++ +     + 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGE 416
            D   + QV  NL+ NAVK+ A G  V V +               I + D G GI    
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P +   F +        + G GLGL I + I+  H G+FLI S+L +G   I  LP  
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLPLA 346


>gi|146280448|ref|YP_001170601.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145568653|gb|ABP77759.1| two-component sensor [Pseudomonas stutzeri A1501]
          Length = 968

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 7/250 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+R E     K+ F++++SHELRTPL AI G   ++     G L++E  +  +   H++ 
Sbjct: 455 RRRME---QMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEA-RPLLTIAHKNS 510

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L+ LIN+ILD+ ++EAGR   +     +  +V++ +  +    Q+  + +     P L
Sbjct: 511 ERLVRLINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPEL 570

Query: 359 SSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +S  A  D     QV+ NLLSNA+K +  GGRV V +   SG    I ++D GPGI E  
Sbjct: 571 ASSEATLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRR-SGERLEIGVQDRGPGIPEAF 629

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   +      G GLGL I +S++    G+     +  +G      LP   
Sbjct: 630 RSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 689

Query: 477 VLNFIPEDNH 486
               +     
Sbjct: 690 HAQPLQPQAP 699


>gi|109899905|ref|YP_663160.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109702186|gb|ABG42106.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1172

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +  ++A+E + AKS FLA+MSHE+RTP+N I+G ++++    +     +  + +   
Sbjct: 645 EMKKAEEQAKEASRAKSEFLANMSHEIRTPINGIVGMNDLLLATEL----TDKQRHFAEL 700

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +H S + LL LIN+ILD S+IEAG+  +      L  ++   I     RAQ+K +E+   
Sbjct: 701 VHSSSESLLLLINDILDFSKIEAGKLSIESIYFDLHLLLGNIIDTFASRAQQKGLELVFD 760

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           +   +   + +D   +RQ++ NLL NA+KFT   G V + V           ++D G GI
Sbjct: 761 LQMDVPQWITSDPGRIRQILNNLLGNAIKFTHH-GEVIMRVALEGDNQLKFFVQDTGIGI 819

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     + + F Q   +      G GLGL I++ +    GG   + S+ ++G      +
Sbjct: 820 HEDNQKALFSKFMQVDSSTTRHFGGTGLGLAISKQLSELLGGTVGVSSQWQQGSTFWFTI 879

Query: 473 PNTRVLNFIPEDNHES 488
                    PE  +E+
Sbjct: 880 --------APEALNEN 887


>gi|311103715|ref|YP_003976568.1| phosphate regulon sensor kinase PhoR [Achromobacter xylosoxidans
           A8]
 gi|310758404|gb|ADP13853.1| phosphate regulon sensor kinase PhoR [Achromobacter xylosoxidans
           A8]
          Length = 435

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 155/432 (35%), Gaps = 33/432 (7%)

Query: 65  WFTQNPIFPMWSLITLAVYAANLSLGKKVM--------NSDIKIGEVYVWRIWLLVGQIA 116
           W   +P    W L ++A+ A  L    ++                 V  W   L      
Sbjct: 22  WLIGDP--AGWILFSVALAAMLLWRSWRLHLVSHWANHPDTSPPASVGPWDDILAPLYRY 79

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
                      E          +  +A  L   +++   +F + +   ++   + + L  
Sbjct: 80  TRA-----RARELNETQNTMQGMLAAAQALPDGAVTLNEDFQIDWCNRMARQHLGLRLPA 134

Query: 177 QAI-----MSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKDDLIAELEV 230
                   +      +  A   +        +      +  +  L+  A    L+   +V
Sbjct: 135 DRGHNLLNLLRAPEFVEYAHRPSWPDPILVRLGQQGQERLMMMQLTAYASNQRLLITRDV 194

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            +    ET +R          F+A++SHELRTPL  + GF E +       L  E  ++Y
Sbjct: 195 TQIERLETTRR---------DFVANVSHELRTPLTVLAGFLETLRDMPADALPAEQREQY 245

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           I  +H   Q +  ++ ++L LS +E+        A+++  ++++    ++  A      +
Sbjct: 246 IDMMHEQAQRMQAIVEDLLTLSTLESSPGS-DPRAVNMGALLQKARQQIE--ALSGGRHV 302

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +        V   E  +   + NLL+NAV++T  GG + V        G   S++D G 
Sbjct: 303 LEWHIDESLDVLGAETELTSALSNLLTNAVRYTPDGGTITVRWEREEDGGARYSVQDTGI 362

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +P +   F +       A  G GLGL I + I   H  + LI S+  +G     
Sbjct: 363 GIPARHLPRLTERFYRVDRGRSRAVGGTGLGLAITKHIAMRHDAELLITSEPGKGSVFAL 422

Query: 471 ILPNTRVLNFIP 482
             P  R+    P
Sbjct: 423 RFPPDRIAIDSP 434


>gi|238917774|ref|YP_002931291.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
 gi|238873134|gb|ACR72844.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
          Length = 475

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 4/236 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +  E +  + +FL+++SH+ R+PL +I G+ E I+    G +  E   +YIG +    + 
Sbjct: 244 QLNESDKFQQKFLSNISHDFRSPLTSIKGYLEAIQD---GTIPPEMLDKYIGIMLFETER 300

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L + IL L+ ++     L  S   L  I+R  +   +   ++K I+       S+ +
Sbjct: 301 LTKLTSNILTLNELDPKSVCLDISVFDLNSIIRHTVETFEGTCKKKGIKFNITYANSIQN 360

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD+  ++QVI NL+ NA+KF+  G  +++TV    G    ISIKD G GI++ +I  +
Sbjct: 361 VKADKGRIQQVIYNLIDNAIKFSKDGSYIYITVK-EKGEKAQISIKDTGCGISKEDIDKI 419

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              F +   +    ++G GLGL I + ++  HG    + S L  G E I  L   +
Sbjct: 420 WDRFYKSDSSRGRDKKGSGLGLSITKEVIQAHGENIDVVSTLGVGTEFIFTLELAK 475


>gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 10/258 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           + I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFS++I        
Sbjct: 207 EDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQT----D 262

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + E  +EYI  +  + + LL LI++ILDLS+IEAG  + S +   + +++ +  + +Q +
Sbjct: 263 DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQK 322

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401
            Q   ++I          +  D   + QVI+NL++NA+KFTA  G + +           
Sbjct: 323 NQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAE-GSITLGYRLNGQKNEL 381

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           Y  +KD G GI   +   V   F +      S  +G GLGL I + I+   GG   + + 
Sbjct: 382 YFFVKDTGIGIPADKAEKVFERFVKL----NSFVKGTGLGLAICRVIIERLGGTIGVDTA 437

Query: 462 LREGVEVIAILPNTRVLN 479
           + EG      LP    + 
Sbjct: 438 VEEGACFWFRLPVQEDIP 455


>gi|229845210|ref|ZP_04465344.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 6P18H1]
 gi|229811921|gb|EEP47616.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 6P18H1]
          Length = 598

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAILALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ IAE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEIAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A++KN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKQKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDYYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|299821622|ref|ZP_07053510.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299817287|gb|EFI84523.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 601

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 141/271 (52%), Gaps = 12/271 (4%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           K+ V IL+   +   + + + V + +++E  +R E     K+ FL ++SHELRTP++ + 
Sbjct: 331 KTYVAILTLLYDGTIIRSIVVVLRDMTEE--RRLE---KMKTDFLNNVSHELRTPISMLQ 385

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+SE I        N E  + +   I+     +  L+NE+LDL+R+EAG   L + A SL
Sbjct: 386 GYSEAIIDGV--AQNEEEVRAFAEIIYEESLRIGRLVNEMLDLARMEAGFTNLDKKAGSL 443

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI--- 385
             +  +    LQ+ A+E ++ +     P+    + D+  M QV +NL+ NA++ T     
Sbjct: 444 TALANKVTANLQVLAEENHVSLAVSSAPADIPYFFDQDRMEQVFINLIMNAIQHTGREGH 503

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPI 444
            G+V V +     R   I+I+DNG GI+E +IP +   F +   A    E +G G+GL I
Sbjct: 504 EGKVAVQLEKLEDR-IKIAIQDNGAGISEADIPYLFERFYKADKARIRGETKGTGIGLAI 562

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            ++I+  HGG   + S L +G   I  LP  
Sbjct: 563 VKNIVDAHGGYIKVESVLGKGSSFIIQLPLQ 593


>gi|163747187|ref|ZP_02154542.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
 gi|161379462|gb|EDQ03876.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
          Length = 511

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 177/471 (37%), Gaps = 31/471 (6%)

Query: 30  KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89
              +   +     +++           + +                +    ++   +L +
Sbjct: 32  SRLYHHVLEQPRAQAMIWCYLTAMTAGVTIWCTHFIAILAYQLDAPATFHFSLTFLSLII 91

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL----TLVEPGTWTPEYLTIYKSATL 145
                   + I  +       ++G    GL  + +     +      T  +   Y +A++
Sbjct: 92  AIIGSTLGVVIAGLGKSPRTTILGGTIFGLAISAMHYTGMVAYRVQGTINWDVEYLTASV 151

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-IT 204
           +IA+ ++ L+       V  S   +   L++  I+       +      TA   +   + 
Sbjct: 152 IIAIVLTTLALGAARREVRASVLSMTALLASAIILLHFTGMAAFQVTPLTAQPVYANPVE 211

Query: 205 YHLFKSNVKILSCQAEKDDLIA---ELEVAKSLSDE---TRKRAEEENLAKSRFLASMSH 258
           Y L    +   +       L +   E        +E    R  AE  + AKS F++ +SH
Sbjct: 212 YQLIALIIAGTAAMITLAALFSYVVENRTRNESIEELRRARDAAESASRAKSEFMSVLSH 271

Query: 259 ELRTPLNAILGFSEVI---ELETMGPLNNET------------YKE-YIGDIHRSGQHLL 302
           ELRTPL  ++G++  +   +   +  L+ E               E Y   I  +G  LL
Sbjct: 272 ELRTPLTIVIGYAGFLSELKRHNLAKLSPEEKPASEHFTKMGDQAELYGQRIKFAGGQLL 331

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            +IN+ILD + +E     L ++A     ++ E +      A +K+  +     P   +V 
Sbjct: 332 TIINDILDYTNMELNDLALDKAAFDTRALLEEVVEEHNGAAHDKSATLHIDTLP--LNVI 389

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD +   QV+ +++ NA+KF+     +++             ++DNG GIAE +   +  
Sbjct: 390 ADRRRSVQVLSHIVGNALKFSKAR-DIYLRARPHVDGF-CFEVEDNGVGIAEEDFERIFE 447

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +F Q   A   AE G GLGL I + +   HGG   ++S L  G      +P
Sbjct: 448 AFTQIEDADDRAEGGTGLGLAICRKLARAHGGDISVKSTLGRGTTFTVFIP 498


>gi|325954801|ref|YP_004238461.1| integral membrane sensor signal transduction histidine kinase
           [Weeksella virosa DSM 16922]
 gi|323437419|gb|ADX67883.1| integral membrane sensor signal transduction histidine kinase
           [Weeksella virosa DSM 16922]
          Length = 343

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 149/335 (44%), Gaps = 18/335 (5%)

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           S    F     V++  F +         +            L + L     I ++  +  
Sbjct: 10  SFGWGFFATLIVYVLMFVLYYVWFQNFAVLYQYKAFLFVTFLVSTLILTIIIHFNNKRQR 69

Query: 212 VKILSCQAEKDDLIAELEV----------AKSLSDETRKR---AEEENLAKSRFLASMSH 258
              L   +    ++   E                D+T++     E EN  +  FL ++SH
Sbjct: 70  RTDLRQFSSILPVLDGEETLDFEDISQKFTTITEDQTKEIDILIEREN-YRREFLGNISH 128

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           EL+TPL ++ G+   +     G  + +   +Y+  I++S   L+ L+ ++  ++ +E  +
Sbjct: 129 ELKTPLFSVQGYLLTLIEG--GVEDEKIRDKYLNRINKSVDRLIYLVKDLDMITELEREK 186

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377
            +L ++  +L  +V+E I +L+++A  KNI+++ K   +    V  D + ++QV++NL++
Sbjct: 187 IKLHQTTFNLTALVQESIDLLEIKAVNKNIDLYIKQPVNPNLRVKGDLEKIQQVLINLIA 246

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+ ++  G +V + +     +   +++KD G GI E +I  +   F +   +      G
Sbjct: 247 NAINYSDEGTKVSIQLERQEDK-VKVAVKDEGVGIKESDIERIFERFYRVEKSRSRNNGG 305

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            GLGL I + I+  H  +  ++SK  +G      L
Sbjct: 306 SGLGLAIVKHILEAHQQKITVKSKPGQGSVFSFYL 340


>gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 839

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 2/241 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  +  KS F++++SHELRTPL +I G   ++     G L  E  K  +G    + + 
Sbjct: 464 ELKRIDRMKSEFVSTVSHELRTPLTSIRGSLGLVWGGVTGEL-PEKAKALVGIAKNNCER 522

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ LIN+ILD  +IE+G+       + L  ++ + +   +  A +  +++  +       
Sbjct: 523 LIRLINDILDSEKIESGKMRFEMQPVELDPLLEQVLAANEGFAAQHQVKLVLRTGRRPVL 582

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D   + QV+ NLLSNA+KF+   G V V +  +      + I D GPGI E     +
Sbjct: 583 VNVDSDRLTQVVTNLLSNAIKFSPAEGTVQV-LLRSGAGRVRVEISDKGPGIPEEFRQHI 641

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +      G GLGL I+++++    G     ++   G      LP  +    
Sbjct: 642 FQKFSQADASDTRQRGGTGLGLSISKAMLERMEGSIGFTTEQNVGTTFFFELPEWKEAPP 701

Query: 481 I 481
           +
Sbjct: 702 V 702


>gi|218130913|ref|ZP_03459717.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
 gi|217987257|gb|EEC53588.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 7/243 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  + AEE    ++ F+A+M+HE+RTPLN I+GF+ ++       L+ E    ++ 
Sbjct: 50  QALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTILAET--DNLDKEQRVAFLK 107

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +I+ +   LL L+N++LD S+IEA   E ++  + +  ++ E  I     ++   I+   
Sbjct: 108 EINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILETCIAENAHSRLPGIQAEF 167

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   +  D     QV+ NL+ NA+KFT   G V V     S +  Y  + D G GI
Sbjct: 168 VEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQ-GCVKVGCRRLSNQNFYFYVADTGCGI 226

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG      L
Sbjct: 227 EEESRRAIFERFVK----MNYNIRGTGLGLSICKSIIEHYGGGIGVESKKGEGSTFYFTL 282

Query: 473 PNT 475
           P  
Sbjct: 283 PAK 285


>gi|167748593|ref|ZP_02420720.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662]
 gi|167651907|gb|EDR96036.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662]
          Length = 728

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 18/259 (6%)

Query: 226 AELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              E      ++ +      E+ + AK+ FL+ MSH++RTP+NAILG + +   E     
Sbjct: 319 ELQEQLSKALEKQKIISSELEQASNAKTDFLSRMSHDIRTPMNAILGLASLARNEL---D 375

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           ++   + Y+  +  SGQ LL L+N++LD+S+IE    EL+     + +  ++   ++  +
Sbjct: 376 HSGKVRSYLDKLEASGQFLLGLLNDVLDISKIERNVIELNPEPYGIDEFQQQVESLIIPQ 435

Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGR 399
            + K+I+     +    S++  D+  M Q+ILNLL+N+VK+T  GGR+ + V     +  
Sbjct: 436 CRRKDIQFNFYKEEIRYSTILMDKLRMNQIILNLLNNSVKYTPGGGRIELHVRDLEENNG 495

Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG----VGLGLPIAQSIMANHG 453
             +I   IKDNG G+++     +   F Q     +    G     GLGL I +S++    
Sbjct: 496 RIHIQLLIKDNGIGMSKEFQEHMYEPFSQ---ERRENAGGDIRNSGLGLAIVRSLVELMD 552

Query: 454 GQFLIRSKLREGVEVIAIL 472
           G+  + S++ +G      L
Sbjct: 553 GKIQVNSEVGQGTVFTVDL 571


>gi|294645581|ref|ZP_06723274.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292639026|gb|EFF57351.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 622

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I  L+  +    + R +AE+ +  KS FLA+MSHE+RTPLNAI+GFS+++          
Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  K Y G I+++   LL LIN+ILDLS+IEAG  E  +  ++L ++ R    + + R +
Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
           E  + +    +     +  D+  + QVI N L+NA KFT   G + +    T  +   + 
Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           +KD G GI   ++  +   F +      S  QG GLGL I Q I+   GG+  
Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIG 622


>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
            clone pWThLOV]
          Length = 1204

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 8/280 (2%)

Query: 213  KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            + L       D+    E  K+L D  ++ AE  + +K+ FL+ MSHE+RTPLNA++GFS+
Sbjct: 794  RALRIVGTYSDITRLKEAEKALRD--KQAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQ 851

Query: 273  VIELETMGPLNNETY-KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++L       + +  + Y   + ++GQHLL LIN++LDL R+E G+  ++   ISL   
Sbjct: 852  LLKLSATNAQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRT 911

Query: 332  VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
            + + + +L   A    +    +ID  +  V AD + +RQV++N++SNA+K+    G V +
Sbjct: 912  IEQALELLAPLAHASAVSFDNRIDEDVL-VRADAQRLRQVLINIISNAIKYNRPDGVVRL 970

Query: 392  TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            T+G   G    + I+D G G+   ++  +   F +      S  +G GLGL IA+ ++  
Sbjct: 971  TLGDRQGDAIDVLIEDTGEGLRPDQLARLFQPFERLGR-ETSPIEGTGLGLIIAKRLIDE 1029

Query: 452  HGGQFLIRSKLREGVEVI--AILPNTRVLNFIPEDNHEST 489
              G   + S+  +G  V     L   +    +P +   + 
Sbjct: 1030 MKGSIEVSSEPGKGTCVTLMVRL-AEQAPAALPHEASAAP 1068


>gi|170745073|ref|YP_001766530.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658674|gb|ACB27728.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 589

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 144/344 (41%), Gaps = 12/344 (3%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
             +     L+  S +      L      +          +        +I  A +     
Sbjct: 96  VAFTLLFALLGWSAAERLAHPLRALAKAASGIDTSTGDARLPKPRGYREI--AELTDALT 153

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           S    +        +  +  +    D  AEL  A   ++  + RAE    AKS FLA+MS
Sbjct: 154 SLLARLGERDQALALANVDLERRVSDRTAELADACDRAEAAQARAEAGERAKSDFLATMS 213

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPLNAI+GF +++      P    + +  +  +    + L  ++N+ILD +RIEA 
Sbjct: 214 HEVRTPLNAIVGFGDLLRD---DPTLTPSQQRCVDQMRVGCEVLTTVVNDILDYARIEAD 270

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLL 376
              L  +  S   +V E + ++   A+ K +++    D      +  D+  +RQV+LNL+
Sbjct: 271 GVALEAAPFSPRALVEETVALVAGTAERKGLDLRWDSDAGTDQPLIGDKTRLRQVLLNLV 330

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           +NAVKFT   G V V +  T         ++++D G GI       + T F Q   +   
Sbjct: 331 NNAVKFTQR-GSVTVALTQTPSPDGVALRVAVRDTGIGIPVDAQARLFTRFAQADSSTTR 389

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNT 475
              G GLGL IA+ ++   GG   + S+   G       +LP  
Sbjct: 390 RFGGTGLGLAIAKGLIETMGGTMGLDSRDGAGSTFWFDVVLPRA 433


>gi|229069534|ref|ZP_04202823.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185]
 gi|228713673|gb|EEL65559.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185]
          Length = 351

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  +  +  +G E I  +P
Sbjct: 297 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVEGEEGKGTEFIVRMP 346


>gi|171059849|ref|YP_001792198.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777294|gb|ACB35433.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1087

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 10/328 (3%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           AL+    +   LP  +      V+   + +  +      I +    +  L+    +    
Sbjct: 469 ALARGCAATLTLPVRLGDEVIGVLNICAAEPDV-FDPGVIEVLTEASRDLAMGISVARTQ 527

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +        +  ++ L   +    +     +  AE  N +K+ FLA+MSHE+RTP+NAI
Sbjct: 528 VEREKVDEQLRRHREQLEELVAERTAALAVAKDAAEVANQSKTAFLANMSHEIRTPMNAI 587

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           +G + ++  ++   L     ++ +  +  + +HLL +IN+ILDLS+IEAG+  L +   S
Sbjct: 588 IGLTHLMARDSRDAL----QRDRLRKVDGAARHLLQIINDILDLSKIEAGKMGLDDIEFS 643

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
             +++   + M+   A  K +E+          +  D K + Q ++NLL+NAVKFT   G
Sbjct: 644 RDELLSGALEMVGEVADAKGLELALDAGNLPERMRGDPKRLAQALINLLANAVKFT-EHG 702

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            V +     + +G        ++D+G GI+  +   +  +F Q   +      G GLGL 
Sbjct: 703 WVRLRGELLADQGGRLQVRFEVRDSGIGISPEQQGVLFNAFAQADASTTRRHGGTGLGLA 762

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471
           + + I A   G+  + S+  EG      
Sbjct: 763 LTRHIAAMMEGEVGLVSQPGEGSSFWFT 790


>gi|170695468|ref|ZP_02886613.1| multi-sensor signal transduction histidine kinase [Burkholderia
           graminis C4D1M]
 gi|170139659|gb|EDT07842.1| multi-sensor signal transduction histidine kinase [Burkholderia
           graminis C4D1M]
          Length = 437

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 6/254 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K +  +     E  +  +  F+A++SHEL+TPL  + GF E +      PL+     
Sbjct: 187 ENRKLVLSQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL---PLSEAERA 243

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  + +    + +++N++L L+++E      S+  I +  ++R      +  + + +I
Sbjct: 244 RYLELMEQQASRMRHIVNDLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAESLSSDHHI 303

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I  + D  L +V   E  +     NL++NA+++T  GG + V+   T G     S+ D+
Sbjct: 304 -ITFEADEGL-TVTGVETELLSAFGNLVTNAIRYTPDGGAIRVS-WQTQGGAAVFSVTDS 360

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +IP +   F +   +      G GLGL I + ++  H  Q  ++S+   G   
Sbjct: 361 GLGIPAADIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTF 420

Query: 469 IAILPNTRVLNFIP 482
               P  R     P
Sbjct: 421 SVKFPLYRTTRRQP 434


>gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
 gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
          Length = 757

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            L    E+      +  +   + + R++A+  N  K   LA++SHELRTPLN I G+ EV
Sbjct: 346 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 405

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           +     G L     ++ I  I RS + L  ++ +ILD S +  G+  L    + L+ IV 
Sbjct: 406 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 461

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
           +    L   AQ   I +  +   +   V  D + +RQ++ NLLSNA KFT  GGRV V++
Sbjct: 462 DVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 521

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                +   +++ D G GI+   +P V  +F +   A  S  +G+GLGL I + I   HG
Sbjct: 522 ERHDAQ-AKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 580

Query: 454 GQFLIRSK-LREGVEVIAILPN 474
           G+    S     G      LP 
Sbjct: 581 GKVEAASAGKNRGTTFAITLPA 602


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 5/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I ++  AK    + R  A      KSRFLA +SHE+RTP+N +LG  +++         N
Sbjct: 520 ITDVYRAKEEVQKARDLAVSTAENKSRFLAIVSHEIRTPMNGLLGMLDLLRENNG---LN 576

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K+ +    +SG++LL+L+++++D +RIEAG  +      ++ +++   + M+   A 
Sbjct: 577 DEQKDTLQVAWQSGRNLLSLVDDVMDFNRIEAGEMQFHYERTNIHELLNAALTMVAADAY 636

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           ++ +++   ++ +L   V  D   +R+++ NLLSNAVKFT   G V +      G   Y+
Sbjct: 637 KRGLDVGLVLESNLPELVVCDAVKVRRILANLLSNAVKFT-QHGSVLLWAEMLPGNRLYV 695

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   E   +  +F  G  +      G GLGL +AQ I+    G+  ++S   
Sbjct: 696 EVKDTGVGIGAQEQQQLFQAFVLGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGVKSIKG 755

Query: 464 EGVEVIAILPN 474
            G      LP 
Sbjct: 756 LGSSFYFELPV 766


>gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 364

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 15/277 (5%)

Query: 201 TYITYHLFKSNVKILSCQAEKDD----LIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                      + I+    EK      L+          +E   +AE+    KS FLA++
Sbjct: 91  VRDGEGWKWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKAEKSERLKSSFLANI 150

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE+R PLNAI+GFS ++  E  G L     +EYI  I  + + LL ++N++LDL+++E+
Sbjct: 151 SHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLES 206

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           G          L  ++ E +   Q++     + +          + +D   ++QV+ N +
Sbjct: 207 GTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPESLDSFLLRSDRIRLKQVLGNFI 265

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           +NA+K+T+IG  +             +S+ D G G++E     V   F +G    ++ +Q
Sbjct: 266 TNAIKYTSIGSIIL--SYQAMENEVLLSVTDTGEGMSEEIKLHVFDRFYKG----RNQKQ 319

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           G+GLGL I Q+I+   GG+  + S+  +G      LP
Sbjct: 320 GIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|229029584|ref|ZP_04185663.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271]
 gi|228731706|gb|EEL82609.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271]
          Length = 483

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 8/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
            L   +   F   V +L    I++  +L   ++  +   L      T  + K ++     
Sbjct: 163 PLEEMIREFFPYFVFSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVK 222

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              + E  +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I
Sbjct: 223 PLAKDEIGELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGI 282

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +         E   +Y+  I+     +  LI+E+   S+++          + +   + +
Sbjct: 283 KEGI--ARTPEQLDKYLTIIYHKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSD 340

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVT 392
           CI  LQL  Q+K I +           V  D + +R+VI N++ N+VK+     G + + 
Sbjct: 341 CIEELQLELQDKGIAVRWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIR 400

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  +      I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  H
Sbjct: 401 MTESID-YVTIYIKDNGVGIEEKALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQH 459

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + SK  +G  +   L
Sbjct: 460 GGDIWVESKKGKGTTLAFTL 479


>gi|260843241|ref|YP_003221019.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O103:H2 str. 12009]
 gi|257758388|dbj|BAI29885.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O103:H2 str. 12009]
          Length = 914

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP        P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPEPKTANQA 676


>gi|226324465|ref|ZP_03799983.1| hypothetical protein COPCOM_02246 [Coprococcus comes ATCC 27758]
 gi|225206913|gb|EEG89267.1| hypothetical protein COPCOM_02246 [Coprococcus comes ATCC 27758]
          Length = 445

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + ++  F+A++SHEL+TPL ++   ++ + ++   P   E Y+E++GD+    +    +
Sbjct: 213 LDASREEFVANVSHELKTPLTSMKVLADSLLMQPDAP--TEIYREFMGDLSEEIERENKI 270

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           IN++LDL +++     L+  +  + ++V   +  LQ  A + NIE+  +      +   D
Sbjct: 271 INDLLDLVKLDKKGANLNIKSQDVNELVERILKRLQPLAAKSNIELVFE-SFRPVTAEID 329

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E  +  VI NL+ NA+K+    G VHV++     +  Y+ + D+G GI + +   +   F
Sbjct: 330 EVKIALVITNLVENAIKYNKENGWVHVSLNA-DHKYFYLKVADSGIGIPKEDTDHIFERF 388

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +      G GLGL IA++ +  H G   + S+  EG      +P 
Sbjct: 389 FRVDKSHSREIGGTGLGLSIARNAVVMHRGAIKVYSEPGEGTTFTVRIPL 438


>gi|166032764|ref|ZP_02235593.1| hypothetical protein DORFOR_02479 [Dorea formicigenerans ATCC
           27755]
 gi|166027121|gb|EDR45878.1| hypothetical protein DORFOR_02479 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 10/322 (3%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            V +S   +V  L         V  + L   +  AL F   +     +    + +  A  
Sbjct: 170 LVSVSTDTIVDTLHELRSSVRTVGGVILIIWVLIALVFSKLMVRPFIRITRSLENATAGY 229

Query: 222 DDLI------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
           D+ +       E        ++   R    + +++ F++++SHEL+TPL ++   S+ + 
Sbjct: 230 DESMLHENAYTETRQMTEAFNKMLGRLRVLDDSRTEFVSNVSHELKTPLTSMKVLSDSLL 289

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +   P+  E YKE++GD+    +    +IN++L L +++     ++ S++++  +V   
Sbjct: 290 TQEDVPV--ELYKEFMGDLSEEIERENKIINDLLSLVKMDKTADTMNISSVNINTLVERI 347

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           +  L+  A + NIE+  +      +   DE  +   I NL+ NA+K+    G VHV +  
Sbjct: 348 LKQLRPIAAKNNIEVVFE-SFRPVTAEVDEVKLSLAITNLVENAIKYNQENGWVHVALNA 406

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
              +  YI + D+G GIA  E   +   F +   +      G GLGL IA+S +  H G 
Sbjct: 407 -DHKLFYIEVADSGIGIAPEETDHIFERFYRVDKSHSREIGGTGLGLAIARSAIVMHRGA 465

Query: 456 FLIRSKLREGVEVIAILPNTRV 477
             + S+  +G      +P T V
Sbjct: 466 IKVYSQPGKGTTFTVKIPLTYV 487


>gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPADQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V +TV          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLTVTARPDGEAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822]
 gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPADQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V +TV          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLTVTARPDGEAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|319898185|ref|YP_004136382.1| sensor protein [Haemophilus influenzae F3031]
 gi|317433691|emb|CBY82079.1| Sensor protein [Haemophilus influenzae F3031]
          Length = 613

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 39  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 98

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 99  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 158

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 159 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 214

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 215 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 273

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 274 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 331

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 332 QLMEGDLTVESERGKGATFHLTL 354


>gi|228907577|ref|ZP_04071434.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL
           200]
 gi|228852069|gb|EEM96866.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL
           200]
          Length = 490

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 8/320 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
            L   +   F   V +L    I++  +L   ++  +   L      T  + K ++     
Sbjct: 170 PLEEMIREFFPYFVFSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVK 229

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
              + E  +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I
Sbjct: 230 PLAKDEIGELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGI 289

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
           +         E   +Y+  I+     +  LI+E+   S+++          + +   + +
Sbjct: 290 KEGI--ARTPEQLDKYLTIIYHKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSD 347

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVT 392
           CI  LQL  Q K I +           V  D + +R+VI N++ N+VK+     G + + 
Sbjct: 348 CIEELQLELQNKGIAVRWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIR 407

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +  +      I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  H
Sbjct: 408 MTESID-YVTIYIKDNGVGIEEKALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQH 466

Query: 453 GGQFLIRSKLREGVEVIAIL 472
           GG   + SK  +G  +   L
Sbjct: 467 GGDIWVESKKGKGTTLAFTL 486


>gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1560

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 133/259 (51%), Gaps = 10/259 (3%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I E +  +   ++   + +E +  KS+F+  +SHE RTPL +ILG++E++E  +   L  
Sbjct: 1306 ITERKQIQQEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAELLERHS-DKLTT 1364

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            E   +++ +I  +GQ L +LI ++L +SR E+G+   + + I++ D  ++ I  +Q+   
Sbjct: 1365 EKKIKHLHNIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIGI- 1423

Query: 345  EKNIEIFQKIDPSLSS-----VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +  EI  K            ++ DEK +R ++ NLLSN +K++ IG RV +++ +   +
Sbjct: 1424 GQGYEILFKQPNLRPHSSTDLIYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQY-ENQ 1482

Query: 400  GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
                 I+D G GI   + P +  SF + S        G GLGL I Q  +  HGG     
Sbjct: 1483 QVIFEIRDQGIGIPLEDHPKLFDSFYRASNVGN--IPGTGLGLNIVQKYVNLHGGTIDFT 1540

Query: 460  SKLREGVEVIAILPNTRVL 478
            S ++ G      LP  + L
Sbjct: 1541 STVKVGTTFKVSLPINKTL 1559


>gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016]
 gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 321

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +      S    ++ + +   L +++E    L +E+    ++ N   + F++ +SHEL+
Sbjct: 14  LLEDSSRTSVFCGMTLEKQVQKLKSDVERNTELLNES----QKLNKNITEFISDISHELK 69

Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           TPLN I    +V+                EY+  +  +   L+ LIN +LD+S++++G  
Sbjct: 70  TPLNVIFAAIQVLAACKSCEDQKCINKRDEYLKIMKENCYRLMKLINNLLDISKLDSGFI 129

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L+    +++ IV +  + L    + K IE+    +     +  D   M ++ILNLLSNA
Sbjct: 130 RLNCHNENVVSIVEDIALSLVPYVESKGIELIFDTNVEEKIMAVDSDKMERIILNLLSNA 189

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G+++V V        YI +KD G GI E ++  +   FGQ   +     QG G
Sbjct: 190 VKFTPPEGKIYVNVQCDDEN-VYIVVKDTGIGIPEDKLKVIFERFGQA-GSTVEENQGSG 247

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +GL +A+S +  HGG+  ++S    G E    LP   +  
Sbjct: 248 IGLYLAKSFVCLHGGEISVKSSRGGGSEFTVRLPVKIIEE 287


>gi|312862820|ref|ZP_07723060.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
 gi|311101680|gb|EFQ59883.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
          Length = 446

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +          +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPN---FIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L     +    +   +        Q     K  EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV+ N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVVDNILNNAIKYSPDGGKITVSMKTTDSQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|254788363|ref|YP_003075792.1| phosphate regulon sensor kinase PhoR [Teredinibacter turnerae
           T7901]
 gi|239918942|gb|ACS34816.1| phosphate regulon sensor kinase PhoR [Teredinibacter turnerae
           T7901]
          Length = 439

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 7/251 (2%)

Query: 238 TRKRAEEEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            R      N    +  F+A++SHELRTPL  + G+ E +    + P   E + + +G + 
Sbjct: 193 ARDVTRVANLERMRQDFVANVSHELRTPLTVLSGYLETLADTGVLP---ERWDKPMGQML 249

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                +  LIN++L LSR+E    +  +  + L+ ++ + +   +  + E+  E      
Sbjct: 250 EQTSRMNRLINDLLTLSRLETDDRDFGQRPVPLLPLLEQIVAEGRALSGERGHEFLINCG 309

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             +  +   E  +R  I NL+ NAV +T  G +V + V  +      + +KDNG GI   
Sbjct: 310 EGI-EIMGQEDELRSAIANLVYNAVNYTPDGKKVSILVN-SDPHELVLKVKDNGEGIESR 367

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            IP +   F +          G GLGL I + I+  H     IRSK+ +G       P  
Sbjct: 368 HIPRLTERFYRVDAGRSRETGGTGLGLAIVKHILLRHDADLKIRSKVGKGSTFSCHFPIK 427

Query: 476 RVLNFIPEDNH 486
           RV+   PE   
Sbjct: 428 RVIQSSPEQQP 438


>gi|227510112|ref|ZP_03940161.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190491|gb|EEI70558.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 498

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 7/255 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  +LI +        ++  +  + +   +  FLA  +HE+RTPL  I G  E I+    
Sbjct: 227 EIGELITDFNHMTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIK---Y 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
             +  E   + I  +    Q L+ L+NE LD  +I +    L +   +   ++   +  L
Sbjct: 284 DVIPQEQRGKSIDLMSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQL 343

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +A E       +    L  ++AD     Q++ N+ +NA++FT   G + + +G     
Sbjct: 344 GSKASESKDRFEIQAPDDLP-IYADYDRFVQIVFNITNNAIQFTDS-GTITL-IGERGYN 400

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I IKD G G+ + +   +   + +   + +       GLGL I   ++  HGG+  +
Sbjct: 401 ETIIRIKDTGIGMTKEQQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISV 460

Query: 459 RSKLREGVEVIAILP 473
            SK  +G     I+P
Sbjct: 461 ASKPHKGTTFTVIIP 475


>gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
 gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
          Length = 886

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 7/274 (2%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L K+N             I++   +       R RA      K+  LA MSHE+RTPLN 
Sbjct: 323 LAKANSPTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMSHEMRTPLNG 382

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           ILG  E++E +++   +    + Y+  I +S + LL  +NE+LD+SR++AG+  L ++  
Sbjct: 383 ILGTLELLEADSLPAED----QRYLRIIRQSSEILLGHVNEVLDISRLDAGKMTLRKTRF 438

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            L+ ++ E +     RA+ +   +  +   P+L  V++D   +RQ++LNL+SNA+KFT  
Sbjct: 439 DLVALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLVSNAIKFT-A 497

Query: 386 GGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           GGR+ +     SG     + + D G GI   ++  +   F     +      G GLGL I
Sbjct: 498 GGRIMIEADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRNTGTGLGLSI 557

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
           +Q +    GG+    S+  +G      LP    +
Sbjct: 558 SQRLATALGGELGAESEPGDGSVFWLRLPLAPPV 591


>gi|331701208|ref|YP_004398167.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128551|gb|AEB73104.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 487

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 143/342 (41%), Gaps = 25/342 (7%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDI-SLAGMLATALSFFTYITYHLFKSNVKILSC--- 217
            V        ++     +  ++   + +L   L  ++    +I   L +   K+ S    
Sbjct: 151 LVAAVTVGAFISDVNSNVKRINRDLLKALFVALLISMLISYFIARRLNRRISKLRSAANQ 210

Query: 218 --------------QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                         + E  +LI +         +     + +   +  FLA+ +HE+RTP
Sbjct: 211 VSNGNYKIRLKPGGKDEIGELIVDFNHMTQSLQQANNEIQRQEERRQEFLANAAHEMRTP 270

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  I G  E I+      +  E+  + I  +    Q L+ L+NE LD  +I +   +L +
Sbjct: 271 LTTISGILEGIK---YDVIPQESRAKSIDLMSSETQWLIRLVNENLDYEKIRSNSIQLDK 327

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
              +   ++   I  L  +A+E   ++       L S++AD     Q++ N+++NA++FT
Sbjct: 328 RHFNAAKVLENVIDQLDSKAEESQDKLVLNAPKDL-SIYADYDRFVQIVFNMVTNAIQFT 386

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG-VGLGL 442
              G + VT G        I + D G G++E +   +   + +   + ++ + G  GLGL
Sbjct: 387 -DHGTITVT-GERGYNETIIKVADTGIGMSEDQQKNIFERYYKADASRRTGKYGESGLGL 444

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
            I   ++ +HGG+  + SKL EG     I+P+        E+
Sbjct: 445 AIVHQLVKSHGGKISVSSKLGEGTTFTVIIPDATAAEKEQEN 486


>gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 496

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL+SMSHELR+PLNAILGF++++  +   P    + +  I  I R+G HLL LIN++
Sbjct: 117 KSDFLSSMSHELRSPLNAILGFAQLMASDL--PPPTPSQQASIDQILRAGWHLLELINDV 174

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LDL++IE+G+  +S   +SL D +REC  M++ +A+++ I +      S   V AD    
Sbjct: 175 LDLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRADRTRF 234

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           RQ++LNLLSNA+K+    G V V     +     +S++D G G+++ ++  +   F +  
Sbjct: 235 RQILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPFNRLG 294

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                AE+G G+GL +A+ +    GG     S + +G      L
Sbjct: 295 Q-DAGAEEGTGIGLVVAKRLTELMGGAIGADSTVGKGSVFWIEL 337


>gi|161984909|ref|YP_408631.2| hybrid sensory histidine kinase TorS [Shigella boydii Sb227]
          Length = 914

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|298244231|ref|ZP_06968037.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297551712|gb|EFH85577.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 14/267 (5%)

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           +D+L    E    +        EE  L + RF+A  SHELR P+ +I    +++      
Sbjct: 267 RDELSILSETFNQMLTN----LEEAYLRQQRFVADASHELRAPITSIRCNLDLL--NKAP 320

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA-------ISLIDIVR 333
            L  E     + D     + L  L+N++L L+R ++ +  L E+        I L  ++ 
Sbjct: 321 DLPGEEISAALTDTQAEAERLGRLVNDLLTLARADSTQQLLREAPHALYHTRIDLDSLLL 380

Query: 334 ECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           +   + + R+++ +I             ++ D   ++QV++ L+ NA K+T   G + ++
Sbjct: 381 DTFRLFRHRSEQASIYPRLLLQHTEPVQIYGDADQLKQVLVALVDNAFKYTPPNGTITLS 440

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +     R   I I D G GI   ++  +   F +   A      G GLGL I + I+ NH
Sbjct: 441 LRSHEHRQACIVISDTGIGIPAEDLSHIFERFYRADPARSRDRGGSGLGLAIVKRIVENH 500

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLN 479
            G   + S    G       P+  +  
Sbjct: 501 RGNIQVESTPGAGSNFTLCFPSVPIAP 527


>gi|189463261|ref|ZP_03012046.1| hypothetical protein BACCOP_03978 [Bacteroides coprocola DSM 17136]
 gi|189429991|gb|EDU98975.1| hypothetical protein BACCOP_03978 [Bacteroides coprocola DSM 17136]
          Length = 912

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 20/320 (6%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                S  +L  +   +L        ++    +  N        +K  L  + +   SLS
Sbjct: 328 LMRYSSQRMLLYACIVILVLVAMLLFFVVRAFWTKNRLNAELSDQKKRLEEQRDQLISLS 387

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS-EVIELETMGPLNNETYKEYIGDI 294
               K+ EE   AK  F  ++SH+ RTPL  I     ++ E   +G    E  +  +  I
Sbjct: 388 ----KQLEEATHAKLAFFTNVSHDFRTPLTLIAAPVNQLAESNKLG----ENERFLLNII 439

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
            ++   LL LIN+ILD  + E G+  ++ S   + + +++     +  +  K+I     +
Sbjct: 440 QKNVTVLLRLINQILDFRKFENGKLSMTLSRFDISENIKDWTDAFRTLSYRKHIHFTVSV 499

Query: 355 DPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYIS--IKDNG 409
           +PS     + AD + M ++  NLLSNA KFT   G + + +   T    +++   + D G
Sbjct: 500 EPSEEGYVMIADAEKMERITYNLLSNAFKFTPENGTIEIKLSQFTKEGERWLRYQVSDTG 559

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G+    +  +  SF Q  +       G G+GL + ++ +  HGG   + S    G    
Sbjct: 560 IGMPAEHVKHIFESFYQIDV----HHAGSGIGLALVKAFVEMHGGTIAVDSGEGRGTVFT 615

Query: 470 AILPNTRVLNFIPEDNHEST 489
             +P  +  N +PE+N E  
Sbjct: 616 LEMPVQQ--NGVPEENVEKN 633


>gi|172037459|ref|YP_001803960.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698913|gb|ACB51894.1| probable two-component sensor histidine kinase [Cyanothece sp. ATCC
           51142]
          Length = 364

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 7/231 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E     +   ++ M+HELRTPL  + G+ E +   ++    +     Y+  + +  + L
Sbjct: 138 LEGVEKRRRELISDMTHELRTPLTVMRGYLEELANGSIEGNPD----LYLNLV-KETRRL 192

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LI+++ +LS+ EAG   ++   I++I ++   +     +  +    I       L  V
Sbjct: 193 ERLIHDMQELSKAEAGYLSITLHPINIIPLLTSLVERFSDQIMDDGPMIQLDYPQELPPV 252

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            AD     Q+++NL+ NA+++T   G + +    T  +  +I I D G GI   ++P + 
Sbjct: 253 LADSDRTEQILVNLIGNAIRYTET-GTITIKAWSTKKQ-VWIEIIDTGIGIKPEDLPYIF 310

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +   +      G G+GL I + ++   GG+  + S++ +G      L
Sbjct: 311 ERFWRADKSRSRYSGGTGIGLAITRRLVELQGGKIEVESEIGKGSTFRFSL 361


>gi|149925445|ref|ZP_01913709.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149825562|gb|EDM84770.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 948

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
           +++     A +I A +NF L   + ++   +V     Q  +   + +++         ++
Sbjct: 217 FQTVIAAQANNIKATANFDLYLGLLVTLMALVGLAVLQRFVVAPLRELNKVSKQIAQGNY 276

Query: 200 FTYITYHLFKSNVK------ILSCQAEKDDLI--AELEVAKSLSDET---RKRAEEENLA 248
              +    F + +        L   + K +L        A+ ++ E    R+RAE +  A
Sbjct: 277 SVTLPEPRFVTEMTNLVKGFALMIGSFKRELEQGEAARSAEMIAFEAKMGRERAEAQVEA 336

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +   LA+MSHE+RTP+NAILG + +    T+     E  + Y+  +  + + LL L+N+I
Sbjct: 337 RGMLLANMSHEIRTPMNAILGMTAL----TLKSDLPEQERNYLLKVQDAAKSLLGLLNDI 392

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-----SVWA 363
           LD S+ EAG  E      +L +++    + +Q +A  + + +  ++ P  S      +  
Sbjct: 393 LDYSKAEAGMVEFEHIPFTLDEVLANSFLAVQSQAASRKLMLLNEVAPGYSNQLGQRLVG 452

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWTSGRGQYISIKDNGPGIAEGEIPT 419
           D   +RQV+ NLLSNAVKFT   G V V         +G    I + D G G+++ ++  
Sbjct: 453 DPSRLRQVLSNLLSNAVKFT-ESGSVRVFSKLQTRSDTGLDLRIEVHDTGSGLSKSQVER 511

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F QG  ++     G GLGL IA+ ++   GGQ  + S    G      +P 
Sbjct: 512 IFEKFAQGDSSVSRVYGGTGLGLSIARELVIRMGGQISVESTPGVGSCFWFSVPV 566


>gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
 gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
          Length = 1085

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 160/419 (38%), Gaps = 24/419 (5%)

Query: 58  LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117
           L++    +     +    +   +    A LS         ++       +  +       
Sbjct: 327 LISYASFFKGHMALLIGAAFFVVLSMLAGLSYTHWYRRRVMEP--AVEAQRMIDERDAFN 384

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
                   +            ++ ++  L  L   +               P+       
Sbjct: 385 RTLIQTAPVALCVISKASGDILFSNSIALEWLGSES-----------DPPQPLQSNAIQI 433

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
                 V        L         ++Y   +         A  D  I+     +   + 
Sbjct: 434 LRSLRSVDRPGSMDNLHIDNERTLSVSYTPARYMDGDAVLCAFTD--ISTRVEIERALER 491

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R  A+E + AKS FL++MSHE+RTPL  +LG  E++    +        ++Y+  I  S
Sbjct: 492 ARSAADEASEAKSTFLSTMSHEIRTPLYGVLGTLELLTATRLDS----QQRQYVNRIEGS 547

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q LL LI++ILD+S+IEAG+ +L   A S  ++V++C       AQ+K +  F  +D  
Sbjct: 548 SQILLQLISDILDVSKIEAGQLKLERLAFSPRELVQDCTGSYAAMAQQKGLLFFSAVDTG 607

Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGR-GQYISIKDNGPGIA 413
           +  SV+ D   +RQ++ NL+SNA+KFT +G  +   + V    G     I + D+G GI 
Sbjct: 608 IPDSVFGDPVRVRQILSNLISNAIKFTNVGSVIVRCLVVDQPPGHVTLQIEVADSGVGID 667

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             E   + T F     +     +G GLGL I   +    G    ++S+ + G      L
Sbjct: 668 REEQNRLFTPFYIVDGSRH-VVRGAGLGLSICARLAELMGSSMQVKSEKQVGSVFSIAL 725


>gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC
           12478]
          Length = 1405

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 134/351 (38%), Gaps = 4/351 (1%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           L  L       P   T+  +   +  L  +A    +L     L               ++
Sbjct: 241 LAALSGIAVGHPAAPTMLAADRSVWPLEQAAHGQSVLVELDGLFRQLPTGDWPDPPAQAL 300

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            V  +   G     L         L +     +   A           +     +  +  
Sbjct: 301 VVPLLQQGGPPYGFLVAALNRYRRLDEGYRGFVELVAGHLAAGIASARSYQAQQQRAEEL 360

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E + AK+ F +++SHE RTPL  I+G    +   T  P  +E  ++ +  +HR+G  L 
Sbjct: 361 AELDRAKTTFFSNISHEFRTPLTLIIGPVAELRRRT--PGLDEQARQELEVVHRNGLRLA 418

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N +LD SRIEAGR       + L  +  +   + +   +   +E           V+
Sbjct: 419 KLVNTLLDFSRIEAGRMRAHYEPVDLAAVTADLASVFRSAVERAGLEFIVNCVRLDEPVY 478

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D     +V+LNLLSNA+KFT   G + V VG        +++ D G G+   E+P +  
Sbjct: 479 VDRDMWEKVVLNLLSNALKFTFE-GSIAVRVG-GGDSAAVVTVSDTGVGVPAAEMPRLFE 536

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +       + +G G+GL + + ++   GG   + S    G      LP
Sbjct: 537 RFHRVETVQARSNEGSGIGLALVKELVGLLGGSITVDSSQAGGTTFTIRLP 587


>gi|81299733|ref|YP_399941.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
 gi|20270658|gb|AAM18355.1|AF299076_1 sensor kinase NblS [Synechococcus elongatus PCC 7942]
 gi|81168614|gb|ABB56954.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
          Length = 664

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 19/254 (7%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E N AKS+F++++SHELRTPL  I  F E +       L+ E  +E++   +     L  
Sbjct: 392 ELNEAKSQFISNVSHELRTPLFNIKSFIETLHD-YGDDLSEEERREFLSTANHETDRLTR 450

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLSR+E+ R   +   I L+  + + +   QL A+EK IE+  +I   L +V A
Sbjct: 451 LVNDVLDLSRLESNR-RYNFEGIDLVQPIEQTLRTYQLNAREKGIELRSEIARDLPAVRA 509

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------GQYISIKD 407
           +   + QV  NL+ NA+KFTA GG V +                           I I D
Sbjct: 510 NYDLLLQVFANLVGNALKFTASGGCVAMRAYLVGQPLRTEAVNHSEIVSSLPNIRIEIND 569

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +   +   F +         +G GLGL I ++I+  H  +  + S++  G  
Sbjct: 570 TGIGIDAEDQEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVEKHQSRIHLISEVGIGTT 628

Query: 468 VIAILPNTRVLNFI 481
               LP  +    I
Sbjct: 629 FWFDLPIYQPEEAI 642


>gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis]
 gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis]
          Length = 930

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 31/288 (10%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            V+     A+  + IA  +  ++  ++T    EE   AK + LA+MSHE+R+PL+ ++  
Sbjct: 332 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLSGVVSM 390

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E++    +    +   ++ +  +  SG  +L LIN+ILDLS++E+G  +L  +     +
Sbjct: 391 AEILSTTNL----DREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPRE 446

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +V+  +       ++  I      D     V  D   +RQ++ NL+SNA+KFT   G+V 
Sbjct: 447 VVKHVLQTAAASLKKFLILEGCVADDVPIEVIGDVLRIRQILTNLISNAIKFTHE-GKVG 505

Query: 391 VTVGWTSGR-------------------------GQYISIKDNGPGIAEGEIPTVLTSFG 425
           + +   +                                + D G GI E  +PT+   + 
Sbjct: 506 INLYVVADPCFGKADGNHQKSSAKEEAQSQETLVWLRCDVYDTGIGIPENALPTLFKKYM 565

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q S        G GLGL I + ++   GG+  + S++  G     ILP
Sbjct: 566 QVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSRVNCGSTFTFILP 613


>gi|327253391|gb|EGE65029.1| TMAO reductase sytem sensor TorS [Escherichia coli STEC_7v]
          Length = 904

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVVEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R +++ I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLLEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 757

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 136/251 (54%), Gaps = 3/251 (1%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   + A+    +    AEE N AKS FLA MSHELRTPLNAILG SE +       L+ 
Sbjct: 501 VTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTPLNAILGLSETLM-LMEDRLSP 559

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EY+GD+ ++G+ LL+ I++IL+ +R++A  + ++         V E + ++++ A+
Sbjct: 560 AKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVAEVVRLMRVVAR 619

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
            +++ +   +  +L SV AD + +RQ+++NLLSNAVKF+   G V + V    G     S
Sbjct: 620 SRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSPKHGVVQLMV-IQDGSRLRFS 678

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           + D+G GI   +I  +   F Q    ++   + G GLGL I +S++  + G   + S   
Sbjct: 679 VSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSIVKSLVDRNAGAVAVDSTPG 738

Query: 464 EGVEVIAILPN 474
            G  +    P 
Sbjct: 739 RGTTISVWFPL 749


>gi|86138915|ref|ZP_01057487.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
 gi|85824562|gb|EAQ44765.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
          Length = 347

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 6/237 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ N  +  F+A++SHELRTPL A++GF E +        +      ++  +      + 
Sbjct: 113 EQANQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDADARDR--FLSIMEGEASRMN 170

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L L+R+E+      +  + L+  +   +  +Q  A   N+ +          + 
Sbjct: 171 RLVGDLLSLNRVESKERIRPKEELDLVAHLASTLKTMQPLADADNVSLKFTPPSEPVMII 230

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIP 418
            D   + QV +NL+ NA+K+      + V +             + + DNG GI    +P
Sbjct: 231 GDPDQLLQVFMNLIENAIKYGGDQVEMTVELLERDPSLRTAAVRVKVMDNGAGIDPIHLP 290

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   F +        + G GLGL I + I+  H G+  + S L  G      LP +
Sbjct: 291 RLTERFYRADNHRSREQGGTGLGLAIVKHIVNRHRGRLRVSSDLGVGTCFAVTLPLS 347


>gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 920

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 149/314 (47%), Gaps = 5/314 (1%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
           +F  +V  + + A           A      +S    +    F + V  L    +  +  
Sbjct: 609 AFARLVAGIDSGADTGTRDWTWIGADGRRHTVSMSLSVAADTFAARVGYLCAGRDVTEAR 668

Query: 226 AELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           A  E+  +  ++ R   +R  + ++AKS F++++SHELRTP+ +I+G++E++E  T+   
Sbjct: 669 ASQEMLVAALEKERLAVERLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTV-VD 727

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                +  +  I R+GQ L+ L +++L LS +++G        + L  ++      ++ +
Sbjct: 728 PAPEQRPMLESIARNGQRLILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQ 787

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              +++E+    +P+   V  D   + + ++NLL NAVKFT  GGR+   VG       +
Sbjct: 788 LTGRDLELSMLAEPAPVLVLGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQ-DDEAW 846

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           +SI D G GI   E   +   F + S A   A QG GLGL I  + +A HGG+  + S  
Sbjct: 847 LSISDTGLGIPVEEQNGLFQRFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAH 906

Query: 463 REGVEVIAILPNTR 476
            +G      LP  R
Sbjct: 907 LQGTTFTVRLPLAR 920


>gi|304317396|ref|YP_003852541.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778898|gb|ADL69457.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 607

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E +  K  F++ +SHE +TPL +I+  + +I  E +G + NE  K  +  I   G+ L  
Sbjct: 377 ELDQVKDDFISIISHEFKTPLTSIMMGTSIILEEKIGTI-NEKQKSTLLAIEEEGEKLTE 435

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+NE+++L++IE+G+   +    S+  IV   I  L   A +K + +   +D  L  V+A
Sbjct: 436 LVNELIELTKIESGKEVYNFKCCSMFGIVENTIKPLYNIASDKGVNLSHSVDEDLPCVYA 495

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + +  V+ NL++NA+K+T  G  + ++          IS+KD G GI +     +   
Sbjct: 496 DPEKISWVLNNLITNALKYTDAGDDISISASI-DNNMMQISVKDTGVGIPKEYKDKIFDK 554

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F           +G GLGL + + I+  HGG+    S L  G   +  LP
Sbjct: 555 FFHTKNGDDFEIKGTGLGLAVVKEIVEAHGGKVWCESDLDVGSNFMFTLP 604


>gi|213401691|ref|XP_002171618.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999665|gb|EEB05325.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1777

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            I + ++ +    E  + A+    +K+RFL++MSHE+RTPL  I G    +    +     
Sbjct: 1122 IHDHKLLEEKLQEANREAQRMMNSKTRFLSNMSHEIRTPLVGITGMVNFLLDTNLTS--- 1178

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                +Y   I +S + LL++IN+ILDLS++EAG  +L+  A S+  ++ +    L   A 
Sbjct: 1179 -EQLDYAHTIQQSSEALLSVINDILDLSKVEAGMMKLTHEAFSVRSMMEDTNETLSTLAF 1237

Query: 345  EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
             KN+E+   +D  +   V  D+  +RQV LN++ NA+KF+   G V         +G   
Sbjct: 1238 SKNLELNYVVDHDVPDMVIGDQARLRQVALNVIGNALKFSHE-GEVFCQCSVKPTQGLAP 1296

Query: 402  -----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
                      D GPG ++ +   +   F Q   ++     G GLGL I++ ++  H G  
Sbjct: 1297 NEIMLQWECYDTGPGFSKEDEEKIFKPFSQIDDSLTRKHGGSGLGLVISRELIELHEGTM 1356

Query: 457  LIRSKLREGVEVI----AILPNTRVLNFIPED 484
               S    G          L    V    P +
Sbjct: 1357 SCTSVKDRGSAFYWSAKFKLNAKPVSIEPPVE 1388


>gi|187924828|ref|YP_001896470.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187716022|gb|ACD17246.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 437

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 6/254 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K +  +     E  +  +  F+A++SHEL+TPL  + GF E +      PL+     
Sbjct: 187 ENRKLVLSQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL---PLSEAERS 243

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  + +    + +++N++L L+++E      S+  I +  ++R      +  + + + 
Sbjct: 244 RYLELMEQQASRMRHIVNDLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAENLSSDHH- 302

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +I    D  L +V   E  +   + NL++NA+++T  GG + V      G     S+ D+
Sbjct: 303 KIVFDTDEGL-TVTGVETEILSALGNLVTNAIRYTPDGGAIKV-AWHAQGGSAIFSVTDS 360

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +IP +   F +   +      G GLGL I + ++  H  Q  ++S+   G   
Sbjct: 361 GLGIPAADIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTF 420

Query: 469 IAILPNTRVLNFIP 482
               P  R     P
Sbjct: 421 TVRFPVYRTARRQP 434


>gi|149914850|ref|ZP_01903379.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
 gi|149811038|gb|EDM70875.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
          Length = 349

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            E+    +  F+A++SHELRTPL A++GF E ++    G  +    + ++G +    Q +
Sbjct: 109 LEQAGQMRRDFVANVSHELRTPLTALMGFIETLQGPAKG--DPRASERFLGVMLSEAQRM 166

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             L+ ++L LSR+EA         + L   +      L+  A+  ++ +   +  +   V
Sbjct: 167 ERLVRDLLSLSRVEADERVRPTDRVDLGKCLSGVGHSLRPVAEAADVHLALDLPDTPVIV 226

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEG 415
             D   + QV  NL+ NA+K+   G  VH+ +   +      G    ++++D GPGI   
Sbjct: 227 PGDVDQLTQVATNLVENAIKYGGKGKTVHIGLTTDANALSLRGPAAIVTVRDEGPGIDAV 286

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            IP +   F +          G GLGL I + I+  H G+  I S+L +G E   ILP 
Sbjct: 287 HIPRLTERFYRIDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIDSELGQGTEFRVILPA 345


>gi|311740195|ref|ZP_07714027.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304750|gb|EFQ80821.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 503

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 9/266 (3%)

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
              E   L A L +       +  RA+E+     RF+   SHELRTPL ++ G++E+   
Sbjct: 247 LHTEVGQLAAALNIMLGQLQRSVVRAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRS 306

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                ++          I    + +  L+ ++L L+R E  R +L    + L+++     
Sbjct: 307 GATKDVDL-----VFSKIDDESKRMSLLVEDLLALTRAEGTRLDLH--PVDLLELALSVG 359

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
              +     + I++      S+  V  D   + QV+LNL++N ++       V + +   
Sbjct: 360 SSARAAFPGREIKVAND-AKSIPVVNGDASRLHQVLLNLVTNGIRHGGEDATVTLRLRRE 418

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
           +     I + D+G G+++ +   +   F +   +      G GLGL I  S++  H G  
Sbjct: 419 AND-VLIDVSDDGKGMSQEDAAHIFERFYRADTSRTRDTGGSGLGLAIVHSLVEQHDGSI 477

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIP 482
            + S+L  G      LP        P
Sbjct: 478 SVDSELGRGTTFTVRLPALADAPSEP 503


>gi|255037155|ref|YP_003087776.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254949911|gb|ACT94611.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 361

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 16/343 (4%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            I      LI+L  +    F+   +  + F   + + ++   + ++ +DI +   +    
Sbjct: 7   FIAVILAFLISLITTTFLAFVDGVSKGMLFVSAIASFASSFFLVLYAVDILVFREVNKMY 66

Query: 198 SFFTYITYHLFKSN------VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
                +    F          +    +   D++   +   +   DE +K      L +  
Sbjct: 67  RTIHKLKMRDFNMAPRKKLIRESNPLKTINDEIFVYVTKKQKEIDELKK----LELFRRE 122

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQHLLNLINEILD 310
           FLA +SHE +TP+ A  GF   +     G ++++  +E ++     +   L  L+ ++L 
Sbjct: 123 FLADVSHEFKTPIFAAQGFIHTLLD---GAMDDDNVRERFLRKAANNLDSLDVLVKDLLV 179

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMR 369
           LS++E G  +++     L  +       L+  A+ +N+ +  K D      + AD   M 
Sbjct: 180 LSQMETGDIKMNIVPTDLRKLTLSIFSRLEHIAKNRNVTLKVKPDDMQEVWIKADADRME 239

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QV+LNL+ NA+K+    G+V V     S +   + +KDNGPGI    +  +   F +   
Sbjct: 240 QVMLNLIENAIKYGNENGKVIVHFS-ESKKYIEVEVKDNGPGIPHEHLNRIFERFYRIDK 298

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +      G GLGL I + I+  H  +  + SK  +G      L
Sbjct: 299 SRSKEIGGTGLGLAIVKHILNAHDTKIAVMSKPDKGTTFSFKL 341


>gi|196036864|ref|ZP_03104251.1| sensor histidine kinase [Bacillus cereus W]
 gi|195990517|gb|EDX54498.1| sensor histidine kinase [Bacillus cereus W]
          Length = 357

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 144/350 (41%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + +  + 
Sbjct: 13  LKVTGAIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILLWILI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D+G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDSGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 303 FYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|326317128|ref|YP_004234800.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373964|gb|ADX46233.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 663

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 148/390 (37%), Gaps = 10/390 (2%)

Query: 84  AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143
           A  +   + ++ +      +           I       +  L   G +T     + +  
Sbjct: 123 AVLVGTLQALIRARTAEDSLRRSDRRFRA--IYSQALSGIGLLERDGCFTDVNPAMARLL 180

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
                  +    +   P           V     A        +  +G         +  
Sbjct: 181 GRTRQEVLGRSISEFAPPGWVDFVRDKTVDSGQSATWQGEFPLMRPSGQWVYLEWSISAH 240

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                +  +      +E+ +L +  +         R  AE  +  K  F+A +SHELRTP
Sbjct: 241 VEPGLRMALAA--DISERVELDSRRQEVLEREQAARATAERLSRTKDDFIAVLSHELRTP 298

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAI G+  +++     P       + +  IHR+ +    +I++ILD+SRI +G+  L  
Sbjct: 299 LNAIAGWVHILKRRGGTP----ELIKGLDSIHRNVKAQARIISDILDVSRINSGKLHLER 354

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
                 ++VR  I  LQ    EK++EI       +   W D    +Q+  NLL+NA+KF+
Sbjct: 355 EWTQPAEVVRSAIDALQASIAEKHLEIVLTAGEDIGPAWLDPTRFQQIFWNLLTNAIKFS 414

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              GR+ V++   +G    ++++D G GI+   I  +   F Q          G+GLGL 
Sbjct: 415 NDSGRIDVSMSR-AGDALTLTVQDFGRGISPEFIEHLFDRFTQSDSPDNRRHGGLGLGLS 473

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
           I + +   HGG     S    EG  +   L
Sbjct: 474 IVKHLAELHGGGVEAYSAGTGEGTTITVTL 503


>gi|257867535|ref|ZP_05647188.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257873864|ref|ZP_05653517.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257801591|gb|EEV30521.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257808028|gb|EEV36850.1| histidine kinase [Enterococcus casseliflavus EC10]
          Length = 578

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHEL+TP+ +++GF+E +        + ET + ++  I +    
Sbjct: 344 RIRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGA--KEDPETLQTFLEIIQKDAYR 401

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L NLI +I+ LS+ ++  ++  +  I+  +++++ +      A +K +    +  P    
Sbjct: 402 LKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAGKKQLTFQFEG-PEPFI 459

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +   ++ ++ ++ NL+ NAV ++  GG + ++      +     ++D G GI E +   +
Sbjct: 460 LSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQ-LLFQVQDQGIGIDEEDQERI 518

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I +      GG   + S  + G      LP 
Sbjct: 519 FERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLPL 572


>gi|167748258|ref|ZP_02420385.1| hypothetical protein ANACAC_03002 [Anaerostipes caccae DSM 14662]
 gi|167652250|gb|EDR96379.1| hypothetical protein ANACAC_03002 [Anaerostipes caccae DSM 14662]
          Length = 998

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 136/303 (44%), Gaps = 17/303 (5%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TR--KRAEEENLAKSRFLASMSHE 259
           +Y   ++    L           +   ++ + +E   R  ++  + +  K  F A+MSHE
Sbjct: 241 SYRWKRAEYSYLKDDKTNIIFCTQDIHSEKMEEEHLARLAEKERQIHQEKMAFFANMSHE 300

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           +RTP+NAIL  SE++  + + PL+ E     I  I+  G  LL +IN +L  S+++ G  
Sbjct: 301 IRTPMNAILNLSELLLRKNL-PLDVEQD---ISTIYEIGNGLLGIINSLLSFSKLDTGNI 356

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378
           +L+    S   +  +   ++  R  +K++  F  +DPS+   +  DE  +R+++ NLL+N
Sbjct: 357 QLTTGKYSPATMCSDICSIISARLSKKSLHFFTDLDPSIPRQLIGDEMRIREILTNLLAN 416

Query: 379 AVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           AVKFT   G + + +   +           I D G GI E +   +   F +        
Sbjct: 417 AVKFTVS-GNIELKLRAKNLSKTKTELSFFISDTGSGIKEEDQKHLFRQFSRVDPKKNQT 475

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNHESTQY 491
             G GLGL I++ +    GG   + S+  +G   I  +P    L      P D  E  + 
Sbjct: 476 IMGTGLGLSISKKLTELMGGSISVESEYGKGSTFIVTIPQEICLAAPMIPPSDKMEQAEV 535

Query: 492 KCY 494
             Y
Sbjct: 536 YVY 538


>gi|293607347|ref|ZP_06689686.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814191|gb|EFF73333.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 939

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 113/258 (43%), Gaps = 10/258 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+ L+  +    + ++ AE  N AK+ FL +MSHE+RTPL  ILG  E+  L  +     
Sbjct: 438 ISALKRIEQSLLQAKRDAEAANQAKTVFLTTMSHEIRTPLYGILGTLELFSLTRVSG--- 494

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +Y+  I +S   LL  IN+ LDLSRIEAG   L  +  S ++++   +     RA 
Sbjct: 495 -QQAQYLETIQQSSATLLRTINDTLDLSRIEAGHTVLERAPFSPVELLNNVVASFAARAH 553

Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400
            K +  +   DP    +V  D   +RQ++ NL +NA+KFT  G  V    V         
Sbjct: 554 AKGVRSYAVADPDAPPAVIGDATRIRQILDNLANNAIKFTDSGQIVLRLKVNSRTRDSVD 613

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
               I D G GIA      +   + Q          G GLGL I +S+     G+    S
Sbjct: 614 LCFQIADTGAGIAPKHQARLFEPYYQVDADNCVTLPGTGLGLSICRSLSDMMNGRLNAVS 673

Query: 461 KLREGV--EVIAILPNTR 476
           +   G        LP   
Sbjct: 674 EPGLGTSITFEIRLPLAP 691


>gi|283850533|ref|ZP_06367821.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574104|gb|EFC22076.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 712

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 146/334 (43%), Gaps = 15/334 (4%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           P    L+     S          +L  A              +++           + E 
Sbjct: 243 PGSNGLAENFRSSATPSGPQTDVLLRAAGGNIRIAEVMTNAFDMQGQELMLGVFRDVTER 302

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           + A+      +++AE     KS FLA+MSHE+RTPLN ILG  +++    +    +   +
Sbjct: 303 KQAEEALQAAKEQAEAATRVKSEFLANMSHEIRTPLNGILGILQLLGHTRL----DAEQR 358

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+    +S   L  L+++ILDLSRIEAG+  L E A  + D     + +  + A+EK +
Sbjct: 359 EYLLAAIQSSHRLTRLLSDILDLSRIEAGKLALREDAFEIADQREATLGLFGMTAREKGL 418

Query: 349 EIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401
           E+  +ID      +  D+  ++QV+ NL+ NA+KFT  G    V V              
Sbjct: 419 ELDFRIDGRMPPRLVGDKSRLQQVLFNLVGNAIKFTEKG---RVRVEVEPIGWCKGVLRV 475

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
              I D G GI +  +  V   F Q  ++   + QG GLGL I + ++   GG+  I S 
Sbjct: 476 LFVISDTGIGIDDAMLQAVFEPFTQAEVSYTRSFQGAGLGLSIVRKLVGIMGGELTIDST 535

Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
              G  V   LP  R+ + +P    ++ +  C A
Sbjct: 536 TGAGTTVYCSLPF-RLPDELPRLAKQAAETGCPA 568


>gi|315499005|ref|YP_004087809.1| response regulator receiver sensor hybrid histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315417017|gb|ADU13658.1| response regulator receiver sensor hybrid histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 527

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 150/327 (45%), Gaps = 9/327 (2%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEK 221
              +     V      + +     I+L  M   A  +        +   +  ++     K
Sbjct: 70  TLKALKAREVTTPVIILTAGGDEAIALEAMELGAADYAVKDINQAYLDLLPAVMQAAFTK 129

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + L+ E E  +      ++RAE  + AK+ FLA+MSHE+RTPLN + G S+++    +  
Sbjct: 130 ERLLRENERQRQELQAAKERAEAASQAKTDFLATMSHEIRTPLNVVTGLSDILIKSPL-- 187

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             N+     +  +  + Q LL LIN++LD+SRIE  + +L  +A    D++ +  +M   
Sbjct: 188 --NDDQYRIVETLRTNAQLLLRLINDLLDISRIEDNKIDLESTAFRPADVMEDLKMMFAQ 245

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
             + K ++          +V  D   ++Q+++NL+SNA+KFTA  G + +     +   +
Sbjct: 246 DIERKGLDFALTDHTQGVTVRGDRTRLQQIVMNLISNALKFTAR-GEIELIGEAQARGDR 304

Query: 402 Y---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               ++++D G GI E +   +   F Q   +I     G GLGL IA++++   GG+  +
Sbjct: 305 VDLCLAVRDTGIGIPEAKRSQIFDKFTQADASITRRFGGSGLGLSIARALVEVMGGEIAV 364

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDN 485
            S+   G      L     +  + +D+
Sbjct: 365 ESEEGRGSLFSVRLSLPVAVMALADDD 391


>gi|238026793|ref|YP_002911024.1| phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
 gi|237875987|gb|ACR28320.1| Phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
          Length = 436

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 117/236 (49%), Gaps = 6/236 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHEL+TPL  + GF E +      PL+++    Y+  + +    + 
Sbjct: 201 ERTDAMRRDFVANVSHELKTPLTVLSGFLETLREL---PLSDDERARYLDMMEQQASRMR 257

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++ ++L L+++E      ++  + + D++   +  +       + EI  +ID +L +V 
Sbjct: 258 KIVTDLLVLAKLEGEGKPPTDKPVDMDDVLGH-LEDVAQTLSAGHHEISFEIDETL-TVT 315

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             E  +   + NL++NAV++T  GG++ V+      +    S+KD+G GI   ++P +  
Sbjct: 316 GAETEIFSALGNLVTNAVRYTPEGGKIRVSWRRDGAQ-AVFSVKDSGFGIPAEDLPRLTE 374

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            F +   +      G GLGL I + ++  H GQ LI+S+   G    A  P  R +
Sbjct: 375 RFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFPAQRTI 430


>gi|254830992|ref|ZP_05235647.1| hypothetical protein Lmon1_06518 [Listeria monocytogenes 10403S]
          Length = 459

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           +  A+       + +L + ++G  +   +   T  T  + K N  +      KD++    
Sbjct: 163 IFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLA 222

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +    ++ E     E+   ++  F+A++SHEL++PL ++ GF+ ++     G L  +   
Sbjct: 223 DSFTKMASE----LEKSEASRQEFVANVSHELQSPLTSMQGFARLL---GSGTLTEKEQA 275

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           EY+  +      L +L  ++L L+ ++       +  + L    R+ I M +   +EK +
Sbjct: 276 EYLTVLSEETTRLSSLSKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKEL 335

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I   +     +   D + + QV  NLL+NA+KFT  GG + V + +      ++ ++D+
Sbjct: 336 TINLDLAD--VNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRL-YEDMTNVFVEVQDS 392

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++ ++  +   F + + +    E   GLGL I Q I+  H G+  ++S L +G   
Sbjct: 393 GVGISKVDMTKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTF 452

Query: 469 IAILPN 474
              LP 
Sbjct: 453 TVKLPK 458


>gi|327478665|gb|AEA81975.1| two-component sensor [Pseudomonas stutzeri DSM 4166]
          Length = 958

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 7/250 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           R+R E     K+ F++++SHELRTPL AI G   ++     G L++E  +  +   H++ 
Sbjct: 445 RRRME---QMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEA-RPLLTIAHKNS 500

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           + L+ LIN+ILD+ ++EAGR   +     +  +V++ +  +    Q+  + +     P L
Sbjct: 501 ERLVRLINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPEL 560

Query: 359 SSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
           +S  A  D     QV+ NLLSNA+K +  GGRV V +   SG    I ++D GPGI E  
Sbjct: 561 ASSEATLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRR-SGERLEIGVQDRGPGIPEAF 619

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              +   F Q   +      G GLGL I +S++    G+     +  +G      LP   
Sbjct: 620 RSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 679

Query: 477 VLNFIPEDNH 486
               +     
Sbjct: 680 HAQPLQPQAP 689


>gi|307943284|ref|ZP_07658629.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
 gi|307774080|gb|EFO33296.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
          Length = 805

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 3/249 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E +  ++ F+ ++SHELRTPL +I G   +      G    E   + +    ++ + L 
Sbjct: 412 QEIDRMRNEFIYTVSHELRTPLTSIRGSLALANTLAAGTEIPEKVSKMMDLALKNSERLN 471

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N+ILDL ++ +G+     S + L + V E + + Q  A E+N+++          V 
Sbjct: 472 LLVNDILDLEKLRSGKTTFDLSEVDLNEAVEESVALNQHYALERNVKLKATPLEQPVVVK 531

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  ++QV+ NL+SNA KF+   G V V VG   G    + + D G GI +     +  
Sbjct: 532 VDKARLQQVLSNLISNAAKFSHENGTVDVRVGL-EGEAAKLYVIDAGMGIPDEFKAYIFD 590

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI- 481
            F Q   + +  + G GLGL I + ++    G     S+   G   +   P  +    + 
Sbjct: 591 PFSQADGSERRKKGGTGLGLNITKRLVEGIDGGINFTSEEGVGTTFVIEFPRLQNAELVR 650

Query: 482 -PEDNHEST 489
            P    +ST
Sbjct: 651 PPRLAEDST 659


>gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 546

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 228 LEVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
            E+  +  +  R+  R E+ N  K+ FL   +H+LR PL +I  ++E+++ +    L+ E
Sbjct: 151 NELTNAQRELARQIVRLEKLNSQKNFFLGMAAHDLRNPLGSIKLYAELLQEDMKHQLS-E 209

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
           T    +  I    + +L ++ ++LD+++I++G+  L    +    +V++ +  L++ A+E
Sbjct: 210 TGAGMLDKIQSLSRFMLGMVEDLLDVTKIDSGQINLQLENVRPGRVVQDALDPLRMLARE 269

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K+I +   +   L  V  D     Q++ NLL+NA+K++  G  V V + +T      + +
Sbjct: 270 KDISLNCHVLEDLPQVNLDVAKFTQMVTNLLTNAIKYSPSGSTVDVRL-YTRDGYLVLDV 328

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV-GLGLPIAQSIMANHGGQFLIRSKLRE 464
            D G GI   E+  +     Q + +  +  +G  GLGL IA+ ++  H G   ++S    
Sbjct: 329 SDYGQGIPGEEMDRLFAE-YQTTSSRPTQGEGSVGLGLAIARRLVEAHDGTIEVQSSQGA 387

Query: 465 GVEVIAILP 473
           G      LP
Sbjct: 388 GTTFTITLP 396


>gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 650

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
           +    I++  ++      ELE       +    A+    AKS FLA+MSHE+RTP+NAI+
Sbjct: 235 RGFNVIVADISDVKRAEIELERLNVQLVQRAAEADAATRAKSAFLANMSHEIRTPMNAII 294

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++  +      ++  +  +  +  + +HLL ++++ILDLS+IEAG+  L      L
Sbjct: 295 GLTHLLARDA----TDDQQRSRLAKVDGAARHLLQVVSDILDLSKIEAGKLSLEREEFRL 350

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
            +++   + M++ +A EK +E+     P    +  D   + QV++NLL+NAV+FT  GG 
Sbjct: 351 DEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRLAQVLINLLANAVRFTDRGG- 409

Query: 389 VHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           V +                 ++D+GPGIA  ++  +  +F QG  +      G GLGL +
Sbjct: 410 VRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFDQGDNSATRRHGGTGLGLAL 469

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471
            +      GG+  + S+L EG      
Sbjct: 470 TRRFATLMGGEAGVDSRLGEGSTFWVS 496


>gi|296161585|ref|ZP_06844390.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295888229|gb|EFG68042.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1490

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 226  AELEVAKS-LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            A +E A+S      R  AE    AK  F A MSHE+RTP+N +LG  EV+E   +    N
Sbjct: 821  ASVEHARSDELARARDLAEAAARAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----N 876

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                E +G IH S   LL +++++LD S+IEAGR  +   +I + ++V   + +L  RA 
Sbjct: 877  TDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAH 936

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
            EK +++   I P +++ +  D   +RQ++ NLL NA+KFT  G   V V+V   +   Q 
Sbjct: 937  EKGLKVRVDIAPDVAAALRGDSVRLRQILFNLLGNAIKFTPQGEVDVRVSVFAEADDVQT 996

Query: 403  IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
            +   ++D G GIA      +   F Q   +      G GLGL I + ++   GG   + S
Sbjct: 997  LEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFGGTGLGLTICRKLIDLMGGSLALHS 1056

Query: 461  KLREGVEVIAIL 472
            +   G  +I  L
Sbjct: 1057 EPGRGTRMIVQL 1068


>gi|302873162|ref|YP_003841795.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307688673|ref|ZP_07631119.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302576019|gb|ADL50031.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 728

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 4/234 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F++++SHE RTPL  I G  E I      P   E   E   ++ +    L 
Sbjct: 496 EKLEQLRKDFISNVSHEFRTPLTVIKGNLESIVDGITRP---EDVMETCINLIKETNRLE 552

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++ ++L+LS++E+G  EL  S + +  ++ + I  L+   ++KNI I   +   LS + 
Sbjct: 553 RMVKDLLNLSKLESGTLELEVSDLDVNLLINDTIRSLRPLIRDKNIAIELSLQEDLSILQ 612

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           +D   ++Q+++  + N++KF++ GG V V   ++  +  YI+IKDNG GI + EI  +  
Sbjct: 613 SDYYKLKQLLIIFIDNSIKFSSKGGVVKVDT-YSKDKELYIAIKDNGIGIPQEEIQYLGE 671

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +   A  +  +G GLGL IA+ ++    G F + S++ +G  +I   P ++
Sbjct: 672 KFYKADKARNATVEGTGLGLSIAKRLVKVLNGTFKVESQVNQGTRIIISFPISK 725


>gi|330953570|gb|EGH53830.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 783

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKASNLRLRESNEELQIARSTALDMAHARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    +   ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPL----SAEQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGMLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHRDASSGENRVRIEVRDTGIGIAQDAQTRIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 GTGLGLALTNNLCEAMNGTLSIQSQSGFGSQFCAELPL 517


>gi|307311622|ref|ZP_07591262.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|306908177|gb|EFN38676.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|315060277|gb|ADT74604.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli W]
          Length = 899

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 316 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 375

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 376 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 435

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 436 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 491

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 492 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 551

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 552 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 608

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 609 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 661


>gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 640

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 7/253 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + A+SR LA  SHE+RTPLN I+G S+++   ++          Y   +  SG+ LL L
Sbjct: 123 ASRARSRLLAMASHEIRTPLNGIIGMSQLLLDTSLTA----EQTTYARAVKTSGEALLAL 178

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363
            +E+LD +R+EAG+ EL      L +++ + + +L  RAQ + +EI   ID  L + +  
Sbjct: 179 TDELLDNARVEAGKIELDRCPFVLGNLIEDVVELLAPRAQARGLEIAADIDERLPASLIG 238

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLT 422
           D   +RQV+LNL  NA+KFT  GG V +T           + ++D G GIA      +  
Sbjct: 239 DAARLRQVLLNLCGNAIKFTEAGG-VTLTAEPGDQAAEFRLIVRDTGIGIAPDAQARIFR 297

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            F Q    I     G GLGL I+  I+A  GG+  + S   +G      LP     +   
Sbjct: 298 EFEQADADIARHFGGTGLGLSISDRIVAAMGGRIALDSTPGQGTTFTVTLPLVAAEDAGA 357

Query: 483 EDNHESTQYKCYA 495
               E    +  +
Sbjct: 358 AATLEPPDLRGAS 370


>gi|323706234|ref|ZP_08117801.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534398|gb|EGB24182.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 473

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 121/236 (51%), Gaps = 5/236 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             + A+  F+A++SHELR+PL+ I G+ + +     G +  E  K Y+    +  + +  
Sbjct: 243 RMDNARKEFVANVSHELRSPLSTIQGYIDGVVD---GTIPAEKSKFYLEIAQKETRRMSR 299

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI+E+LD++++E+G + L+ S   + +++R  II ++ R  +K++ +    +     V A
Sbjct: 300 LISELLDITKMESGAFPLNISEFDINELIRLTIIKMEARISDKDLMVKVDFESDKEIVEA 359

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+  + QV+ NL+ NA+KF+  GG +HV+      +  ++ +++ G  I   EI  +   
Sbjct: 360 DKDKIEQVLTNLIDNAIKFSNPGGYIHVSTEKVKEK-VHVRVQNKGKTIPPDEIDHIWDR 418

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           F +   A      GVGLGL I +SI+  H       S   +G      L + +V  
Sbjct: 419 FYKVDKARS-GSPGVGLGLYIVRSIINLHNEDIWATSSDADGTTFTFTLKSKKVKQ 473


>gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 812

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +    E  +  E+ +  K+ F+  +S+ELR+PL  I+GF++++     G L+ E   EY 
Sbjct: 563 ERALVEKNEALEQADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLS-EKQGEYA 621

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   LL +IN+ILDL+ ++AG  EL  S + +   V   +  L+ R  E  I + 
Sbjct: 622 DYIRSSSSALLAIINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLR 681

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +  ++ S+ ADEK +RQV+ NL+SNAV+++   G V V             +KD+G G
Sbjct: 682 TDVPDNIGSMVADEKRLRQVLYNLISNAVRYSEEEGVVDVVCNR-KDEAVEFVVKDHGCG 740

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I    +  V   F  G  A     QG GLGL I +S +  HGG+  I S   +G  V   
Sbjct: 741 IPADILTQVFNRFV-GHNAGARR-QGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCS 798

Query: 472 LPNTRVLN 479
            P    L+
Sbjct: 799 FPAKPELS 806


>gi|284047510|ref|YP_003397849.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
 gi|283951731|gb|ADB46534.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
          Length = 576

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 126/308 (40%), Gaps = 14/308 (4%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
             + +  +    L   L     T+L               +    Q +   L      A 
Sbjct: 278 PTAGRPRILGKFLMPFLPPEARTSLDQLRNSRAWNRTVKYRSRQYQLDLQPLEPPQGRAS 337

Query: 233 SLS-----DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +       E R+R       +  F A+++HEL+TPL +I GF+E++          E  
Sbjct: 338 RMLIIQDITEARER----EQLRRDFTANVTHELKTPLTSISGFAELMAAGMYQK--KEDI 391

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             +   I +    LL +IN I+ LSRIE    E  +  + L  +++  +  +    +++ 
Sbjct: 392 THFGQLIRKEAARLLEMINSIIFLSRIEEVPAEALQEEVPLGGLIQSVVEFMDPFCKDRQ 451

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           + I   +      V      +R++ +NL+ N VK+   GG V+VT+G    +   +++KD
Sbjct: 452 VTIHCHLTED--KVRGSSSMLREMAMNLIDNGVKYNRPGGHVYVTMGRDGDQ-VVLTVKD 508

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI E     V   F +   +      G GLGL I + I+  H G+  + S++ EG  
Sbjct: 509 TGIGIPEDVQERVFERFYRVEGSRSKQSGGSGLGLSIVKHIVEQHRGKIRLTSRVNEGTS 568

Query: 468 VIAILPNT 475
           +   LP  
Sbjct: 569 IEVQLPRA 576


>gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1177

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 15/285 (5%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +L++ +     +  +    L  +   +D+  E       +   + +A   N  K+RFLA
Sbjct: 502 GSLAWGSISATLVKNTETGALMLEGSLEDI--EERKQHEAAILAKNQAVAANQEKNRFLA 559

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHE+RTP+ AI+G +E++    +     +   +YI  +  + + LL+L+++++D+SR+
Sbjct: 560 ALSHEMRTPMTAIIGMTELLNETGL----TQQQAQYIKLMKSANEQLLSLVSDVMDISRV 615

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           +AGR +L     +L+++V +    +  +A EKN+E+   + P     +  D   ++QV+ 
Sbjct: 616 DAGRLKLETIPFNLLELVEKACETMAEKAHEKNLELACSVSPKTPIHLLGDPYRLKQVLN 675

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQ 426
           NL+ NAVKFT   G V VTV   +              + D G GI    + ++     +
Sbjct: 676 NLMQNAVKFTEK-GEVVVTVRDAAEGDKKDGQAVIEFCVSDTGIGIPSKRLASLFDHMAK 734

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +        G G+GL I++ ++    G F + SKL +G      
Sbjct: 735 DNDVDFHHYGGTGVGLSISRKLVEMMKGDFTVSSKLEQGSTFCFT 779


>gi|294812875|ref|ZP_06771518.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|294325474|gb|EFG07117.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 738

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 10/303 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           +  ++   +       +  A  L   L   T     +              +++     +
Sbjct: 426 IAGVAAGVLALTVGATVIAATRLVRPLRALTGAAQRMKDGERTEPVPVTTDNEV---GRL 482

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A + +D    RA      +   ++ ++HELRTPL+ I G+ E  +     P        +
Sbjct: 483 AAAFNDMAAHRA-RLEAQRRAMVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAA-----F 536

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +      L ++I+++ DL+  +AG   L    +   +++ +     Q RA E   ++
Sbjct: 537 VDSLLEEAVQLQHIIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDL 596

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             ++   +  + AD   +RQ + NLLSNAV+ T  GG V +      G    I + D G 
Sbjct: 597 RVEVPHPVPVLSADPVRLRQAVGNLLSNAVRHTPRGGSVTLRAA-VRGERLAIEVADTGQ 655

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  ++P V   F +   +      G GLGL I + +   HGG   + S+   G     
Sbjct: 656 GIAAEDLPYVFDRFWRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTL 715

Query: 471 ILP 473
           +LP
Sbjct: 716 LLP 718


>gi|291534446|emb|CBL07558.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 898

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 184/433 (42%), Gaps = 43/433 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           ++ + +     +           +  L        L  +                  L  
Sbjct: 20  IYTVYMVVAAVYLKWPSWVAAVIICGLLASIGLRMLTGRYSR---------------LAK 64

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVV 172
                + W  + L    T               +A S+  LS F L    ++S    +++
Sbjct: 65  LFCSVMIWMNIILYTVFTDGSS------LTMATVAASVVMLSLFDLIEINYVSLAATILL 118

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                 ++     D  +  M      F   I        ++I+  +  K+ +  ++E   
Sbjct: 119 FCLDTFLLDKVNYDNPIREMEFFMQFFAIII--------LEIMENKQLKNRIQHDME--- 167

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +ET +  E+   AK  F+A++SHE+RTPLN+I+G    I  E +    ++T KE + 
Sbjct: 168 --FNETMRELEDAKQAKDDFMANISHEIRTPLNSIIG----IGSELLDAKVDDTTKEQLY 221

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           DI  +G++L++L+++ILD S +E    EL E   ++  ++ + + M  +  +EKN+EI  
Sbjct: 222 DITVAGRNLMSLVSDILDFSELENDTMELVEEPYNITSVINDVVNMAHVWNKEKNLEIIV 281

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR-GQYISIKDNG 409
             +  + + +  D + + ++ILNL++NA+KFT  GG +  V     S      + +KD G
Sbjct: 282 DCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAGGVILFVGARKESYGINLMVKVKDTG 341

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++E  I  +  ++ Q          G+GLGL I++ ++A   G   I S    G  V 
Sbjct: 342 IGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAISRKMIAKMNGHMHIESVPDAGTTVS 401

Query: 470 AILPNTRVLNFIP 482
            I+P  RVL  +P
Sbjct: 402 IIIP-QRVLTDMP 413


>gi|297567023|ref|YP_003685995.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296851472|gb|ADH64487.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 475

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 149/391 (38%), Gaps = 24/391 (6%)

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN 156
            ++  +  V         ++ G  WT L+L          + +  +A LL   S   + +
Sbjct: 101 LLQPNQRLVLPKRAYEELLSKGETWTTLSLPLEQGG---RINLLVNAVLLQGSSGDFVIS 157

Query: 157 FMLPY-----AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +                +  A +   +M    L   L       L +       + +  
Sbjct: 158 TVGRPTESIDFTLDQLARIYTATALIVLMLGAWLAYRLMSRTLEPLEWVAKRAEQMSERP 217

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
            K+   +   +++ A +     +      R EE    ++RFLA  SHELRTP+ AILG  
Sbjct: 218 AKLPELEG-NNEVAALVRALNGMLA----RLEESWETQTRFLADASHELRTPVTAILGHV 272

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
             +          E  +E +  + R G+ +  L+ ++L+LS+   G + +  S + L  +
Sbjct: 273 SYLLRR---TPLTEQQRESLEIVRREGERMKKLVGDLLELSKT-GGTWRVELSPVHLHTL 328

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           + E          +    I  ++   L  V  D + + QV  N++SNA K  A    + +
Sbjct: 329 LAEIAEEYGQSFPQGG-RIQLEVPEDL-WVLGDVERLHQVFANMVSNAQK--AQASEIRL 384

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V         I ++DNG GI    +P +   F +   A      G GLGL I ++I+  
Sbjct: 385 -VARDLQERVVIRVEDNGEGIPPEHLPHLFERFYRVDKARDRERGGSGLGLSIVKAIVEA 443

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           HGG   + S++  G      L   R    +P
Sbjct: 444 HGGSVWVESEVGRGSVFSVSL--RRAEKQLP 472


>gi|7212861|gb|AAF40475.1|AF227964_1 aerobic respiration control sensor protein [Haemophilus influenzae
           Rd KW20]
          Length = 598

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|152974333|ref|YP_001373850.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023085|gb|ABS20855.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 462

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 143/330 (43%), Gaps = 15/330 (4%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +   +    N      +        + +    ++   +     + ++   L      T  
Sbjct: 143 VTGYVHMFLNTSFLEKMISRLTNQFIIIGCLTLILTTISVFLFSRVITDPLIKMKKATER 202

Query: 207 LFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           + K N  I   +    E   L   +E   S     +         ++ FL+S++HEL TP
Sbjct: 203 MPKLNKPIALGIKRNDELGSLATTIEELSSELTYMK-------KERNEFLSSVAHELLTP 255

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  + G+++V + E +   + E  +EY+  I      +  LI ++ DL+++E  ++ + +
Sbjct: 256 LTYMKGYAKVAKREGL---SKEEREEYLQIIEDETDSITALIQDLFDLAQLEQHQFIIKK 312

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             ++L   + + I   +    + +I+I    +  L +V+ DE+ M QV+LNLL NA + +
Sbjct: 313 QKVTLRPFLEKIIEKTKTNFSKTDIQIRLHCNDHL-NVYIDERRMEQVMLNLLQNAYQHS 371

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                + + V   +     I ++D G GI   ++P +   F +   +   A  G G+GL 
Sbjct: 372 HEPSIITINV-LENENTFTICVQDEGEGIPSEDLPHIFDRFYRVDKSRTRATGGKGIGLA 430

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +A+ I+  H G   ++S+L  G E +  LP
Sbjct: 431 VAREIVELHNGTITVQSELNVGTEFLIKLP 460


>gi|145628532|ref|ZP_01784332.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 22.1-21]
 gi|145639720|ref|ZP_01795322.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittII]
 gi|144979002|gb|EDJ88688.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 22.1-21]
 gi|145271088|gb|EDK11003.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittII]
 gi|309750363|gb|ADO80347.1| Aerobic respiration sensor-response protein ArcB [Haemophilus
           influenzae R2866]
          Length = 598

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|301168871|emb|CBW28464.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 10810]
          Length = 598

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGIGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLS 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|300925320|ref|ZP_07141210.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1]
 gi|300418542|gb|EFK01853.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1]
          Length = 904

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|253564264|ref|ZP_04841721.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251948040|gb|EES88322.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 534

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 4/231 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           N AK RF  ++SHE RTPL  I+   E++  +   P    +    I  I +  Q +  LI
Sbjct: 2   NQAKLRFFTNVSHEFRTPLTLIISQVELMLQKNTIP---PSLHNSIFRIRKHAQQMKLLI 58

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +E+LD  + +    +L  S  SL   + E  +     A +K+I    K+     S+W D+
Sbjct: 59  SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDISIWIDD 118

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             MR+V+ NLLSNA K     G + +    T  +   I++KD+G GI++ E   +   F 
Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQ-VVIAVKDSGNGISKEEQERIFDRFY 177

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           Q     K+   G G+GL + +SI+  H G   + S+  EG   I  LP TR
Sbjct: 178 QADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPKTR 228


>gi|241763957|ref|ZP_04761999.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
 gi|241366780|gb|EER61221.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
          Length = 460

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 13/259 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+ +  +  F+A++SHE+RTPL  + GF E ++     PL+ +    Y+  + +    
Sbjct: 198 ALEQADAMRRDFVANVSHEIRTPLTVLTGFVETLQTL---PLDADERSRYLAMMAQQAAR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM---LQLRAQEKNIEIFQKIDPS 357
           + +++ ++L LSR+E            ++ ++  C      L     +          PS
Sbjct: 255 MQSVVQDLLTLSRLEGSPLPGMSEWTPVLALMHRCEEEGRALSALLTQNQQRHHVLQFPS 314

Query: 358 LSSVWAD------EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
           +  + A+         ++ V+ NL+SNAV++T   G + V     +      S+ D GPG
Sbjct: 315 VQELRAEGDIAGVPSELQSVLSNLISNAVRYTPASGTITVQWRRAADGSATFSVSDTGPG 374

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           IA   +P +   F +   +      G GLGL I + ++  HG    I S   +G      
Sbjct: 375 IAPEHLPRLTERFYRVDRSRSRETGGTGLGLAIVKHVVQRHGAVLDISSVPGKGSVFSVT 434

Query: 472 LPNTRVL-NFIPEDNHEST 489
            P  R+    +P+ +  + 
Sbjct: 435 FPANRLRCPALPDGSPPAA 453


>gi|189464362|ref|ZP_03013147.1| hypothetical protein BACINT_00703 [Bacteroides intestinalis DSM
           17393]
 gi|189438152|gb|EDV07137.1| hypothetical protein BACINT_00703 [Bacteroides intestinalis DSM
           17393]
          Length = 649

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 138/294 (46%), Gaps = 16/294 (5%)

Query: 186 DISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            I +  +   +L F  +   HL   +  +       + ++L+   E         +++AE
Sbjct: 369 RIIIFLIALLSLGFIIFYREHLLNGRLRISQKRLSEKNNELLCSQE----ELKYAKEQAE 424

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  KS F+ +MSHE+RTPLN+I+GFS+++        +N+  KEY   I ++   LL 
Sbjct: 425 DGSRMKSEFIQNMSHEIRTPLNSIVGFSQILSSYF---SDNDDTKEYAHIIEQNSTSLLQ 481

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS ++  R   ++S   +  + + CI  ++ + +  ++++    +    ++  
Sbjct: 482 LVNDVLDLSYLDGEREIPAQSIAEITGVCQTCIDQVRSKLK-PDVQLIFTPERENFTMQT 540

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           +   + Q+++NLL NA KFT   G V +T       +    S+ D G GI   +   V  
Sbjct: 541 NPDRISQILMNLLQNAAKFTQE-GSVTLTYHIREEEKVILFSVTDTGIGIPADKQEAVFE 599

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +      S   G GLGL I++ I    GG  LI S    G   I  LP   
Sbjct: 600 RFTKLD----SFVPGTGLGLSISRLIAEKMGGSLLIDSTYTTGCRFILTLPLKE 649


>gi|319775909|ref|YP_004138397.1| Sensor protein [Haemophilus influenzae F3047]
 gi|317450500|emb|CBY86717.1| Sensor protein [Haemophilus influenzae F3047]
          Length = 613

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 39  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 98

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 99  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 158

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 159 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 214

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 215 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 273

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 274 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 331

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 332 QLMEGDLTVESERGKGATFHLTL 354


>gi|227545062|ref|ZP_03975111.1| possible histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300909269|ref|ZP_07126730.1| histidine kinase [Lactobacillus reuteri SD2112]
 gi|227184960|gb|EEI65031.1| possible histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300893134|gb|EFK86493.1| histidine kinase [Lactobacillus reuteri SD2112]
          Length = 495

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 141/337 (41%), Gaps = 16/337 (4%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A + IA  +S +   M    + L    +  +L T A+         LA  +   +   
Sbjct: 153 MIAVVSIATFVSTIEQNMHQIKINLIMALLTASLVTLAV------SYFLARSITKRIDRL 206

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMS 257
              T+ + + N  +      +D++         ++   R+  +E       + +F+A+ +
Sbjct: 207 RMATHQIAQGNYNVEVDDNGRDEVADLGRSFNQMTASLRESQQEIRWQEERRRQFMANAA 266

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL  I G  E ++      +  E  K  I  +    + L+ L+N+ LD  +I   
Sbjct: 267 HEMRTPLTTINGILEGLQ---YDAIPEEDKKHSIQLMQNDTRRLIRLVNDNLDYEKIRTN 323

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +         ++      L  +A+EK   +   ++ +L  V+AD     Q++ N++ 
Sbjct: 324 QIAMERKVFDASAVLENLREQLAKKAKEKKDTLHLDVEKNL-RVYADYDRFVQIMFNIIQ 382

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQ 436
           NA++FT   G + +         Q++ ++DNG G+   ++  +   + +   +   +   
Sbjct: 383 NAIQFT-DNGIIDIRGKRVEKGSQFV-VQDNGIGMTPEQLENIWERYYKADRSRMNTKYG 440

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             GLGL I + ++  HGG+  ++S+  +G       P
Sbjct: 441 ESGLGLAIVRQLVLLHGGKIDVKSQYGKGTTFTIFFP 477


>gi|255008019|ref|ZP_05280145.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313145735|ref|ZP_07807928.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313134502|gb|EFR51862.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 794

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +      ++ AE+  L K  FL +MSHE+RTPLNAI+GF+ V+  E    ++ 
Sbjct: 538 IQEAVEREHQLILAKQMAEKAEL-KQSFLNNMSHEIRTPLNAIVGFTNVLIGEGSEEIDP 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +     +  I+ + + LL LIN++L++SR+++G  +       + +I++E  +  Q   Q
Sbjct: 597 DEKASMLDIINHNNELLLKLINDVLEISRLDSGSLDFEIKEWDMTEIMKEIYLTYQPLIQ 656

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403
                  +  +P    V  D     QVI N L+NA KFT   G + +            I
Sbjct: 657 PSLQFHLELGNPVPLLVHIDRFRFTQVISNFLNNANKFT-QNGHIILGCKVDEEHHEVCI 715

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI E E+  +   F +        EQG GLGL I++ I+    G+  + S+  
Sbjct: 716 YVKDTGKGIDEKELMMIFDRFYKTDE----FEQGSGLGLAISKVIIERLSGRIEVHSEKG 771

Query: 464 EGVEVIAIL 472
           +G     IL
Sbjct: 772 KGSCFAVIL 780


>gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 610

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 175/461 (37%), Gaps = 23/461 (4%)

Query: 18  PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77
                +    P ++ F               + IL                      ++ 
Sbjct: 118 AVLWLMAAGLPLEVWFATRRPGAAAAGAAFAAMILAFLATASG-------GAVSGGSYAS 170

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           + + V  A   + +  +N+              +              +      + + L
Sbjct: 171 VAVLVLYAASLVARGFVNAAKPAEIKVGAPQIAVAAGDVQFSLDMEGVVSSVDANSAKLL 230

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
            +        AL         + Y   L+       +    +    + +           
Sbjct: 231 GVQPKMLEGTALIDRVHVADRVEYLSLLADLRAGATVRKIDVRLRSIENGETIFRTYRLE 290

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
              +     L   +++          L+ E+   K+  +  R         K R LA++S
Sbjct: 291 GAASAHAITLIGRSLEGEQ------KLLEEIATLKAELESERI-------GKGRLLAAVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E  G L +E  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLSHEMGGKLASEKQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y +    ++  +    C  ++   A++K +    ++   +  + AD + ++Q++LNL  
Sbjct: 398 NYSIDPQTLAFREAAEMCTAVMLPLAEKKGVAFCHRVGNGIGELVADRRAVQQILLNLAG 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G+     S+ D G GI   ++  + T F + +     A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMAEGRAMLEFSVSDTGIGIEPEDMQRIGTPFVRANNNYARA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++G GLGL + + ++  H G   ++S   EG  V   LP  
Sbjct: 518 QEGSGLGLSVVKGLVELHQGTMQLKSCPGEGTVVTVRLPVA 558


>gi|158337403|ref|YP_001518578.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158307644|gb|ABW29261.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 790

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 11/241 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL++MSHELRTPLNAILGFS++++     P      ++ +  I++SG HLL LIN+I
Sbjct: 341 KSEFLSNMSHELRTPLNAILGFSQLLQQ---DPQIPPHQQKQLDIINQSGTHLLALINDI 397

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           L++S+IEAG   L +S I L +++     M++L+A  K +       P+L   +  D   
Sbjct: 398 LEMSKIEAGFSTLKQSPIELQELLDSVKAMMELKATAKQLGFEFVYSPALPQFIEVDAGK 457

Query: 368 MRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVL 421
           +RQ+++NLLSNA+KFT  G   + V   + +           ++KD G GIA  EI  + 
Sbjct: 458 VRQILMNLLSNAIKFTQKGYVSLTVDAIYPASDSSGLMQLRFAVKDTGLGIAPEEIEQLF 517

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           T F Q +    +   G GLGL +++       G   + S + +G      +   ++ + +
Sbjct: 518 TPFVQTASGRITQM-GTGLGLALSRKFAQLMKGDITVDSVVDQGSTFTCWIEVQQIGSAV 576

Query: 482 P 482
           P
Sbjct: 577 P 577


>gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 768

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
                  ++ +    A++   +      +   D  R +A+  N  K   LA++SHELRTP
Sbjct: 350 ARAYVALSLTLRETGAQRRRDLRAQRSLQGARD-ARDQADTSNRLKDELLATVSHELRTP 408

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LN I G+ EV+       L      + +  I RS + L  ++ +ILD S +  G+  L  
Sbjct: 409 LNVIYGWIEVLRNTGDHAL----QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDA 464

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           + + ++ +  + +   Q  A    I +    D S   V  D + +RQ++ NL+SNA+KFT
Sbjct: 465 TPVDVVRLFSDQVGTFQTAASSAGILLEFDCDASACIVSGDAERLRQMLSNLISNALKFT 524

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG V V +    G    +++ D G GIA    P V   F +   +  S  +G+GLGL 
Sbjct: 525 PGGGSVTVGLAR-DGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLS 583

Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           I + I   HGG   + S     G      LP 
Sbjct: 584 IVRHIAQLHGGSVTVASAGRDRGTTFTVTLPA 615


>gi|310815828|ref|YP_003963792.1| Probable two-component sensor histidine kinase [Ketogulonicigenium
           vulgare Y25]
 gi|308754563|gb|ADO42492.1| Probable two-component sensor histidine kinase [Ketogulonicigenium
           vulgare Y25]
          Length = 344

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 137/342 (40%), Gaps = 19/342 (5%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
           ++A+   +   A+ +S    ++A +  A   + +  + L           +     +   
Sbjct: 5   LNAIIGALDLPALIISPEGQIIAHNAAARDLIGMDMVGLPHAAVLRQPAVSAAVDLVLSG 64

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRA-----------EEENLAKSRFLASMSHE 259
             +  +   ++      +   ++ + E ++RA           EE N  +  F+A++SHE
Sbjct: 65  APESRARLTQRGASRDSIWQMRAAAFEGQRRAILVTFTDLTAVEEANQIRRDFVANVSHE 124

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LRTPL AI+GF E +        +      ++  + R    ++ L++ +L LSR+E    
Sbjct: 125 LRTPLTAIMGFIETLRGPARD--DPGVRGRFLDIMEREANRMVQLVDGLLSLSRVEVDER 182

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
               + + L  +  E I  L+  A + N  +    +P    V  D   + QV+ NL+ NA
Sbjct: 183 VRPTTPVDLKALAEETIAALEPLAAQGNNTVTLHAEPGNWIVPGDIGQLHQVLRNLVQNA 242

Query: 380 VKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           +K+      V + +               I ++D GPGI    IP +   F +       
Sbjct: 243 LKYGGPDKNVVIALHPAQFDVALRATAVRIDVQDEGPGIEAHHIPRLTERFYRVDAHRAR 302

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              G GLGL I + I+  H G+  I S   +G     +LP  
Sbjct: 303 TVGGSGLGLAIVKHIVNRHRGRLAISSTPEKGSTFSVLLPQE 344


>gi|222095608|ref|YP_002529665.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221239666|gb|ACM12376.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 351

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 151/346 (43%), Gaps = 16/346 (4%)

Query: 134 PEYLTIYKSATLLIALS----ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
              L ++   T++ +++     S ++   +  + F++F    +      ++   ++ + +
Sbjct: 11  GAVLALFSFLTIIWSIAFYVSSSVINALEIRVSPFVTFLISDMVGFVFIVLIWVLIGVLM 70

Query: 190 AGMLATALSFFTYITYHLFKS--NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
                  +         + K   +VKI + +    ++   ++    ++DE          
Sbjct: 71  RPKREAMIWTIIEPIKKIAKGDFSVKIRNEEKYNGEIGVLVKSINDMTDELN----AMEK 126

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            +  F++++SHE+++PL +I GF+  ++   +   + E  + Y+  I      L  L   
Sbjct: 127 MRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---SEEKREHYLTIIETETTRLSKLSQN 183

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + AD++ 
Sbjct: 184 LLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITADQES 241

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   F + 
Sbjct: 242 MSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQHIFERFYKA 300

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 301 DSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346


>gi|299541797|ref|ZP_07052120.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725535|gb|EFI66176.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 621

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 4/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+  + +  F++++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 382 EKIEMDRREFVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPT--FLNVTQTETERMI 439

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR+++  YEL++  +         I   +  ++   ++  +    +   V 
Sbjct: 440 RLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFE-MSKSDKVQFERLFPETSFYVE 498

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N++SNA+K++  GG +             + I D+G GI +  +  +  
Sbjct: 499 IDTDKITQVIDNIISNAIKYSPDGGNIRFGFT-GQDDMLKVMISDDGMGIPKENVGRIFD 557

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   +  G GLGL IA+ ++  HGG+    S+  +G  +   LP
Sbjct: 558 RFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608


>gi|325679756|ref|ZP_08159330.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108571|gb|EGC02813.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 508

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 5/248 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E+E    + ++ +    + N  +   + ++SH+LRTPL  +  ++E+I    +   N   
Sbjct: 247 EVEQLAKVLNDAKNEIRKVNDLRRDLIGNVSHDLRTPLTMVKAYAEMIRD--LSGDNPVK 304

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E+I  I      L NL+N +L+LS++E+G  EL+    S++D + +C+   QL  ++ 
Sbjct: 305 RAEHIQVIIDEADRLSNLVNNLLELSKLESGNMELNLKKFSIVDKLNDCMTRYQLVIEQN 364

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             ++  + D     V AD   + QVI N ++NA+ +T     + +     + +   I ++
Sbjct: 365 GYDMKFEPDDDR-EVTADPDKLDQVIYNFINNAINYTGEHKVIRIK-QINTEKAVRIEVE 422

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GIA+  +P V   + +    +K    G GLGL I + I+  H   F +RS+  +G 
Sbjct: 423 DNGKGIAKDLLPKVFDRYYR-DAKVKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGS 481

Query: 467 EVIAILPN 474
                +P 
Sbjct: 482 TFWFEIPV 489


>gi|288958108|ref|YP_003448449.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910416|dbj|BAI71905.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 843

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 165/421 (39%), Gaps = 24/421 (5%)

Query: 60  ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119
              G W     ++  W++ T  V    ++     +            R   L        
Sbjct: 287 TVFGPWRDSARLYIGWAVATTVVILLFVTAFIVELQWRRHTDRALRVRNRALA------- 339

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATL--LIALSISALSNFMLPYAV------FLSFFPVV 171
            W+   ++      P    +Y +  L  L+    SAL       A+        +  P+ 
Sbjct: 340 -WSNDGIMIADATQPGMPIVYVNPALERLLGSPASALMGSGALTALERATNDRAALQPLR 398

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
            A+       + +     A       +    ++    + +   L         I++ + A
Sbjct: 399 EAILVGRDARVELTRPGQADGTGAWEARCLELSASPVRDHDSRLVSLIATVRDISDHKRA 458

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           ++   + R+ A+  N+AKS+FLA+ SH+LR P+ +++   EV+       +     +  +
Sbjct: 459 QAALADARREADRANVAKSKFLAAASHDLRQPVQSLMLLMEVLSSRVSDGMT----RSVL 514

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G + R+   L  L++ +LD+SR+EAG  E       L +++       +  A +K + + 
Sbjct: 515 GTMERALGALKMLLDGLLDVSRLEAGAVEPQVEVFPLSEVLDRVAANSRPVAVQKGLILH 574

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
               P  + V +D   + ++I NL+ NA+++T   GRV V      G    I + D G G
Sbjct: 575 IV--PCGAHVRSDPMLLGRIIQNLVENALRYTDR-GRVLVGCRRR-GARLRIEVWDTGIG 630

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I   +   +   F Q   A ++ +QG+GLGL + + +      +  +RS   +G      
Sbjct: 631 IPADQQEDIFQEFVQVGNASRNRDQGLGLGLAVVRRLSVMLDHEVTVRSSPGKGSVFALE 690

Query: 472 L 472
           L
Sbjct: 691 L 691


>gi|254718492|ref|ZP_05180303.1| histidine kinase [Brucella sp. 83/13]
 gi|265983462|ref|ZP_06096197.1| histidine kinase [Brucella sp. 83/13]
 gi|306838299|ref|ZP_07471145.1| histidine kinase [Brucella sp. NF 2653]
 gi|264662054|gb|EEZ32315.1| histidine kinase [Brucella sp. 83/13]
 gi|306406590|gb|EFM62823.1| histidine kinase [Brucella sp. NF 2653]
          Length = 438

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 144/383 (37%), Gaps = 18/383 (4%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W   +L+  + +G  W    +            +       ++           P  VF 
Sbjct: 47  WFRAILLALVVLGAVWAAAGIGNGEDEKVPSREVVSREMAAVS-GERLADLLTDPMIVFD 105

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               V  A +        + + +   +   A      I   +     + +          
Sbjct: 106 HTATVRFANAAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPIDR 165

Query: 226 AELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
               + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF E 
Sbjct: 166 WYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFIET 225

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   + 
Sbjct: 226 LQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAATLA 283

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                L   A    + I + +      V      + QV  NL+ NA K+   G RV + +
Sbjct: 284 HVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVIIRL 343

Query: 394 GWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                        SI+D GPGIA   +P +   F +  +    A +G GLGL I + I+A
Sbjct: 344 SEEDTGSATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHILA 403

Query: 451 NHGGQFLIRSKLREGVEVIAILP 473
            H G+ ++RS+L EG   +  LP
Sbjct: 404 RHRGRLVVRSQLGEGSTFMVRLP 426


>gi|254786056|ref|YP_003073485.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685209|gb|ACR12473.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 557

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 9/270 (3%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
           +  LF +N  +       + ++AE        +  R  A     AKS FLA+MSHE+RTP
Sbjct: 30  SRQLFHANECLERATRHLEKIVAE---RTEELERARDEALASVRAKSEFLANMSHEIRTP 86

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           +N I+G    ++         +  ++ +     S + L++++N+I++ S+ EA   ++  
Sbjct: 87  MNGIVGMLRALKKNQH----TDKREKLVDTAIHSSKILVDILNDIIEYSKFEAVGVDIEL 142

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382
           S  ++ D +           Q+K +E        +   +  D   ++QV+ N L+NAVKF
Sbjct: 143 SPTNITDTLESVADTYAFPIQKKGLEFILDFSLDIPKLISTDAVRIKQVVGNFLNNAVKF 202

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           T   G + ++    +     IS+ D+G GI++ ++  +  +F QG  ++     G GLGL
Sbjct: 203 T-ESGYIILSAHMQNDGAIAISVTDSGKGISQDQLELIFQAFNQGDTSVTRKYGGSGLGL 261

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            I+  I+   G    + S+   G      L
Sbjct: 262 AISSKIVKRLGSNIQVVSQESVGTRFSFSL 291


>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
 gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
          Length = 1193

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + E E         R+ AE+ N  KS FLA+MSHE+RTPL+AI+G  E+       P   
Sbjct: 677 MTEYEFLIKELSAARENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNKGHPGTE 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E+    I   + S   L+ L+ +ILD+++IE+G+ EL+   +   ++    I +    A+
Sbjct: 737 ES----IQVAYESAHTLMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLAR 792

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           +K++E+   ID      ++ D   + Q++ NL+SNA+KFT  G   + V     S +   
Sbjct: 793 QKHLELTCDIDVLHPEEIYVDPIRLHQIMFNLVSNAIKFTEQGSVDIQVKCLSGSDQQVM 852

Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +   + D G GI + + P + + + Q        + G GLGL I   +++  GG   + S
Sbjct: 853 LELVVNDTGVGIPQDDQPQIFSPYKQSDAG--KKQVGTGLGLSICAQLVSMMGGTIELFS 910

Query: 461 KLREGVEVIAIL 472
           +   G  +   +
Sbjct: 911 QPGRGTRITVEI 922


>gi|237743472|ref|ZP_04573953.1| sensory transduction protein kinase [Fusobacterium sp. 7_1]
 gi|229433251|gb|EEO43463.1| sensory transduction protein kinase [Fusobacterium sp. 7_1]
          Length = 623

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L  ++         +++ AE  N AK+ FLA +SHE+RTPL  I+G+S ++ 
Sbjct: 127 ELKELNKNLEDKVVERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRILL 186

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E     + E     +  IH SG  LLN  NE+LD S+IE+G+ +L+    ++  + ++ 
Sbjct: 187 KEINDVSSKEK----LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDI 242

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A+ KNI        +  S+++D+  + ++  N++ NA+K+T  G    V    
Sbjct: 243 YHEHIDLAKMKNINFKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG---FVLCDI 299

Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  + ++ D+G G++E  I  +  SF Q        + G GLGL I + ++    G
Sbjct: 300 FVEKNTLFFNVYDSGIGMSEENIKNIFESFVQIGN----EQSGAGLGLSITKKLLEVLNG 355

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +  + SK+  G      +P  
Sbjct: 356 KIEVESKVGIGSTFKIQIPIE 376


>gi|86607374|ref|YP_476137.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86555916|gb|ABD00874.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 654

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 127/317 (40%), Gaps = 10/317 (3%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              V        I +   + I   G L   L            + +++    A +  +  
Sbjct: 328 LQQVPELWQAAQIRAWVAMPILYQGRLLGLLELHHQHPRRWQLATLELAEAIANQVGVAL 387

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
               A    +E  ++ +  + AKS  +A + HELRTPL+ I    E +  +   PL  E 
Sbjct: 388 LQAEAYQHLEELNRQLQALDRAKSELIAVIGHELRTPLSTIQVCLESLAGDPDMPL--ER 445

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            +E +    +    L  L+ + L LS++E+GR       +S  + V   +  ++ R + +
Sbjct: 446 RQEMLNAALQDAGRLRELVQDFLTLSKLESGRVRWHIEPLSAQECVELALSNVKARRRHE 505

Query: 347 NI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GR 399
            +  I Q +   L  V AD + + +V+  LL NA KFT   GR+ +              
Sbjct: 506 ELPTIEQALPKRLPMVRADGEWLVEVLRKLLDNACKFTPPSGRIWIRAEVEPPAGEPGEA 565

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
               ++ D+G GI    +  +   F Q   +++ +  G GLGL I + I+   GG+    
Sbjct: 566 MVRFTVADSGRGIEPERLQAIFERFYQAEGSLRRSVGGTGLGLAICRLIVEAMGGRIWAE 625

Query: 460 SK-LREGVEVIAILPNT 475
           S  + +G      LP  
Sbjct: 626 SPGINQGSAFHFTLPIA 642


>gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 10/269 (3%)

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +     +         +  +   + +  + ++ AE  + AKS FLASMSHE+RTPL  I
Sbjct: 273 ERDAEGSIRTVLCIARDVTRIRQQEQMLRKAKEEAEMASRAKSEFLASMSHEIRTPLGGI 332

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
           LG +E++     G  N    + Y+  I  S   LL ++N+ILDLS+IEAG+ +L      
Sbjct: 333 LGMTELLMARVAGDSN----QSYLELIENSAMSLLGILNDILDLSKIEAGKVDLEPEEFE 388

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386
             + +       +++A++  +    ++DP++   +  D + ++Q++ NLLSNAVKFT  G
Sbjct: 389 FREEMLTLAEPFRIQAEKSGLSFDVRLDPAIPERMHGDLEKLKQILRNLLSNAVKFTVKG 448

Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           G V +T       G       ++ D G GI   +  ++   F Q    +     G GLGL
Sbjct: 449 G-VTLTTDLADKCGDQCRLRFTVSDTGIGIPRHKQRSLFGMFEQLRDHMSKNCAGTGLGL 507

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            I++ +    GG   + S+   G      
Sbjct: 508 AISKRLAGMLGGDISLESEKGLGSTFTFT 536


>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
 gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 163/402 (40%), Gaps = 19/402 (4%)

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT- 133
           W ++  A       +      +  K+    V      +   +  + WT  + + P   + 
Sbjct: 102 WCMVGYASNLILTLMKVIFETNRSKLKLHMVSCYINTLAATSYAMLWTGFSPIVPDVQSC 161

Query: 134 ---PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
              P+   +Y      I   +  +S++     V++    V V        + ++      
Sbjct: 162 LYIPQRWMLYCFTAPAIIYILCQISDYTTRMRVWVIMLNVGVTGKRGLGTTWNLFPFVYF 221

Query: 191 GMLATALSF-----FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK----- 240
             +  ALS             L K        +A    +    E A    +E  +     
Sbjct: 222 AAIDGALSLEISEPLWAALDWLTKMVYSSSLMEANFFTIAQRREFAVRAIEEANRLATIQ 281

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +       K  FL++MSHELRTPLN I+G SE +     G L  +  K  I  +  SG+ 
Sbjct: 282 QLSTAIERKDDFLSAMSHELRTPLNGIIGLSESLMAGACGQLPEKAVKT-ISTVKLSGKR 340

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN+ILD ++++ G   +    + +  +V + + +     ++  + +      ++  
Sbjct: 341 LLQLINDILDAAKMKQGTLVIKHEKVDIKRLVTDVLDLSLPLVRK-GVRL-VNNVGNVPK 398

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPT 419
           +  D   + Q++ NL+ NA KFT   G + +T G +      Y+++ D G GI + ++P 
Sbjct: 399 IVGDNGRIVQILYNLVGNAAKFTRQ-GVISITAGVSEDNIKVYVTVSDTGVGIPKEKVPK 457

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +  +F Q  ++      G GLGL + + ++  HGG+  + S+
Sbjct: 458 IFGAFEQADMSTTRRYGGTGLGLHLVKELVKAHGGEITVESE 499


>gi|296448571|ref|ZP_06890444.1| histidine kinase [Methylosinus trichosporium OB3b]
 gi|296253911|gb|EFH01065.1| histidine kinase [Methylosinus trichosporium OB3b]
          Length = 589

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +LAKSRFLA++SHE+RTPLN +LG ++++    +    +     Y+  I  SG+ L  LI
Sbjct: 73  SLAKSRFLATVSHEIRTPLNGVLGLAQLLAATRL----DAEQASYVDAIGASGRSLAQLI 128

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           ++ILD S+IEAG+ EL   + +L  +V   + +L  RA+ KN+EI   I  +    +  D
Sbjct: 129 DDILDFSKIEAGKVELRIESFALAPLVEGVVELLAPRAEAKNLEIAGFIAANAPERIEGD 188

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              +RQV++NL  NAV FT+ GG V + V   +       + D GPG+  G    +   F
Sbjct: 189 AARVRQVLVNLAGNAVNFTSEGG-VGLRVEIDAEGALVFRVVDTGPGVPPGAREIIFEEF 247

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            QG  +      G GLGL I++ +    GG+  I  +   G   +  LP 
Sbjct: 248 EQGDGSSTRRHGGTGLGLAISRHLAKLMGGRLEIEDRPGPGSVFMFTLPR 297


>gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
 gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
          Length = 1353

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 127/305 (41%), Gaps = 24/305 (7%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P+  AL    +   +    +L    AT   F T++    F    K +  Q E +    E 
Sbjct: 771  PIPTALEIIVLPIWYKTWWALLIFFATFAGFITFVFR--FFWMRKSMEAQLEIERRDKEH 828

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +             EE N  K RF  ++SHELRTPL  IL   +    E +  +++   +
Sbjct: 829  Q-------------EEINQMKMRFFINISHELRTPLTLILTPLQ----EIINKISDRWTR 871

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
              +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K I
Sbjct: 872  NQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKAKKGNAHQLIQDNFLFYDKLARHKKI 931

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
                  +     V  D   +  ++ NLLSNA K+T  G  + VT+         + + D 
Sbjct: 932  TYTLHSELEDKEVLFDANYLELIVNNLLSNAFKYTESGQSITVTLK-EENGWLLLQVSDT 990

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G   
Sbjct: 991  GIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLIELHHGRIELDSEENKGSTF 1046

Query: 469  IAILP 473
               LP
Sbjct: 1047 SVYLP 1051


>gi|153007726|ref|YP_001368941.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151559614|gb|ABS13112.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 430

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 159/440 (36%), Gaps = 25/440 (5%)

Query: 41  HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100
             E       +    VL+ + +          P W    L       ++      +  + 
Sbjct: 13  QAEKSIFEPLLRVKGVLIASMVLAVCVLALDLPFWFRAGLLAVVVLGAVWLASEVASSEP 72

Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
            E               G     L       +      ++ ++  L A         +  
Sbjct: 73  DEEPAKTAAPNEMAGVSGERLADLLTDPMVVFDHSGTVLFNNSAALEAFQSLETGTALYL 132

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                   P + AL    I       I           F        FK+ VK L  +  
Sbjct: 133 R----FRAPEMHALIQGVIADGEARSI---------EYFERVPIDRWFKAMVKALPGKDG 179

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           + +L   L   +S +          +  +S F+A+ SHELRTPL ++ GF E ++     
Sbjct: 180 RPELFVLLFRDQSETR-------RIDRMRSDFIANASHELRTPLASLRGFIETLQ--GPA 230

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
             +      ++  + +  + +  LI+++L LSR+E   +      + +  I+      L 
Sbjct: 231 RNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNECVDMTSILNHVADTLT 290

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399
             A   +I I +++     +V      + QV  NL+ NA K+   G RV V +   +   
Sbjct: 291 PLAAGLDISIERQLPDHPVTVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDNSGS 350

Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S++D GPGIA   +P +   F +  +    A++G GLGL I + I+A H G+ +
Sbjct: 351 SAEVVASVQDFGPGIAAEHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLV 410

Query: 458 IRSKLREGVEVIAILPNTRV 477
           +RS+L EG      +P   V
Sbjct: 411 VRSQLGEGSTFTVRMPKRTV 430


>gi|56697871|ref|YP_168242.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679608|gb|AAV96274.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 898

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169
             +     G     L L        E +       L  ++  + L    +   V L    
Sbjct: 136 YALSNPRDGSEIGRLALELSFRPVQEDMVARSYVVLGSSILQALLVTAAIFLIVQLIVIR 195

Query: 170 VVVALSTQAIMSMHVLDISLAG-----MLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224
            +  L   A+         L G              + +     ++   +   +A +D+L
Sbjct: 196 PLARLQAAALRVRDGYSFRLKGRDQRMFDVNRQDEISRLARAFRRT---VTELEASRDNL 252

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
              ++       E R  A E + AKS FLA+MSHELRTPLNAI+G S ++  +     N 
Sbjct: 253 QELVDERTRELLEARNEAVEASQAKSIFLANMSHELRTPLNAIIGLSGILLRDGQSNDNT 312

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 + D+  + + L   I+ ILDLS+IEAG   L +    L D++ + ++  +    
Sbjct: 313 ----RNLTDLRAAAKQLSENIDSILDLSKIEAGELVLEQVWFRLDDLLDDVLMQTRALMV 368

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            + + +     P L   + AD   +RQ+++N  SNAVKFT   G + +   +       +
Sbjct: 369 GQPVLLTWDYAPDLPDELCADPLRLRQIMVNFASNAVKFTKE-GEIRLLASY-HDGALRL 426

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI+  +I  +  +FGQ   +      G GLGL I+Q +     G+  + S+  
Sbjct: 427 GVRDTGIGISPEQIEGIFKAFGQADGSTTRQYGGTGLGLSISQKLADKMQGKIQVDSEPG 486

Query: 464 EGVEVIAIL 472
            G E   +L
Sbjct: 487 RGAEFTMVL 495


>gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
 gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
          Length = 1353

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 127/305 (41%), Gaps = 24/305 (7%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P+  AL    +   +    +L    AT   F T++    F    K +  Q E +    E 
Sbjct: 771  PIPTALEIIVLPIWYKTWWALLIFFATFAGFITFVFR--FFWMRKSMEAQLEIERRDKEH 828

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +             EE N  K RF  ++SHELRTPL  IL   +    E +  +++   +
Sbjct: 829  Q-------------EEINQMKMRFFINISHELRTPLTLILTPLQ----EIINKISDRWTR 871

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
              +  I R+   LL+L+N+++D  R E G +EL     +   ++++  +     A+ K I
Sbjct: 872  NQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKAKKGNAHQLIQDNFLFYDKLARHKKI 931

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
                  +     V  D   +  ++ NLLSNA K+T  G  + VT+         + + D 
Sbjct: 932  TYTLHSELEDKEVLFDANYLELIVNNLLSNAFKYTESGQSITVTLK-EENGWLLLQVSDT 990

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   +   +   F Q      S   G G+GL + Q ++  H G+  + S+  +G   
Sbjct: 991  GIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLVQRLIELHHGRIELDSEENKGSTF 1046

Query: 469  IAILP 473
               LP
Sbjct: 1047 SVYLP 1051


>gi|218132753|ref|ZP_03461557.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992479|gb|EEC58482.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
          Length = 383

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 16/324 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              +++ L   + +   ++ + LA     A +    +        +  L+   E+  +I 
Sbjct: 71  MTSLLLTLWMHSSIVKPIMRLKLAAQNIQAGNLDFELPVEYSGDEIASLTKDFEEMRIIL 130

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           +         E + +AE  +  K   + ++SH+L+TPL AI G+ E +          E 
Sbjct: 131 KNNA------EEKIKAE--SEEK-ELIRNISHDLKTPLTAIKGYVEGLLDGV--ADTPEK 179

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
            ++Y+  I+     +  LI+E+   SRI+  R   + + I +   + +C   + L  + K
Sbjct: 180 REKYLKTIYNRASDMDKLIDELTMYSRIDMNRVPYTFTKIDINHYMEDCCEEIGLELETK 239

Query: 347 NIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYIS 404
            I +           V  D + M++VI N++SN+VK+ +   G + + + +  G    I 
Sbjct: 240 GISMEYHNFSNEEQYVMIDIEQMKRVINNIISNSVKYMSDRKGMIRIEL-FNDGDYALIR 298

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I+DNG GI+  ++  V   F +   +  S + G G+GL I + ++  HGG     SK   
Sbjct: 299 IEDNGKGISPEDLKHVFERFFRADSSRNSKQGGSGIGLAIVKKVIEEHGGMIWAESKEGI 358

Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488
           G  +   L   +V+    E   ES
Sbjct: 359 GTVMNIRL--KKVIKDNNESEGES 380


>gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 399

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 157/424 (37%), Gaps = 55/424 (12%)

Query: 75  WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
           W ++        L  G +   +  +  E+   R   +V        +  L          
Sbjct: 3   WIVLLALTTMIALLWGWRGQRNLRR--ELAYLRNRPVVAPTPSADPFNQLFRTLSAALDA 60

Query: 135 EYLTIYKS---------ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
             + +            A  L  +S +A+ N  +   V          +  Q+I      
Sbjct: 61  GVIVVNDGRTIRYCNDVAAKLFGVSANAVVNHSVITLVRDYQA---DTMIEQSIRRRDPQ 117

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245
            ++L  +L+              ++         E   LI   ++ +    E        
Sbjct: 118 QVTLQPVLS-------------NRTIRIWCEPLPESGALILARDLTQLSLLE-------- 156

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
             A+   +A++SHELRTPL +I    E +  +       E  +  +G +      ++ L+
Sbjct: 157 -RARRDLVANVSHELRTPLASIKLLVETLATQP----PPELAQRMLGQVDTELDAVMQLV 211

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +E+ +LS+IE+GR  L      + DIV      +Q +A+ K++ +   I P L  V+ D 
Sbjct: 212 DELHELSQIESGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIAPDLPEVYVDR 271

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---------------GRGQYISIKDNGP 410
             + QV+LNLL NAVK+T  GG + +  G  S                R   ++I D G 
Sbjct: 272 DRISQVLLNLLHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRWVIMAIHDTGA 331

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    IP +   F +   A      G GLGL I + ++  HGG   + S    G     
Sbjct: 332 GIPAEAIPRIFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVASSEGRGSTFTV 391

Query: 471 ILPN 474
            LP 
Sbjct: 392 ALPV 395


>gi|1122856|emb|CAA63920.1| TorS [Escherichia coli K-12]
          Length = 904

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|295688611|ref|YP_003592304.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430514|gb|ADG09686.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 815

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 153/397 (38%), Gaps = 12/397 (3%)

Query: 83  YAANLSLGKKVMNSDIKIG--EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140
              + +  ++           +    +    VG +       L+           +L  +
Sbjct: 285 GMVDAAALRRFETESDLKRLMQHIRAQDRD-VGTVLSPKGDRLVAYGRLIEPGWWFLMTF 343

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
            S    I  S    ++++L +        V++       M +  L            +  
Sbjct: 344 PSGD--IVWSSLKTASWVLLFGFLGVLAQVLLLYRLTNQMVVAPLHHLAEAQRLGDPAAA 401

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260
             I     +  V   S + ++D     L   +    E     +  N AKS FLA+MSHEL
Sbjct: 402 APIEAREDEIGVLARSLRGQRDRNEELLRSLEERVAERTAELQSANQAKSVFLANMSHEL 461

Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320
           RTPLN ++  S+ +  E     +    +E    +  SG+ L  ++++ILD+S+IEAG ++
Sbjct: 462 RTPLNGVIAISDRLAEER----DPAVRRELAAVVSSSGRLLEQVLSDILDVSKIEAGEFQ 517

Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379
           L+     L  +V+    +    AQ K +     ++P  + +   D   + Q++ NLL+NA
Sbjct: 518 LTPEPFDLARLVQGMAELHAAAAQAKALTFRWSVEPEAAGTYEGDSGRISQILSNLLANA 577

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           VKFT   G V + V  +        ++D G G        +   F Q   +I     G G
Sbjct: 578 VKFT-DDGEVALEVDRSDEG-VRFVVRDTGVGFDASVRERLFKRFVQADQSITRQYGGTG 635

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL I  ++    GG+        EG     +LP  R
Sbjct: 636 LGLSICAALTDKMGGRITADGAPGEGARFEVVLPLQR 672


>gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           + EL+  + L +  RK +      KS F+A++SHE+RTPLNAI+GFS +I        + 
Sbjct: 146 VTELQNVQRLLNIERKNSISAERLKSTFIANISHEVRTPLNAIVGFSGLIA----TASDE 201

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-RA 343
           E  K Y+  I  + + LL LIN+I DLS+IEAG      S     D++RE   M ++   
Sbjct: 202 EEKKLYMDIISENNERLLRLINDIFDLSQIEAGTLNFEYSEFDANDLLRELEGMFKVKLF 261

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
              ++++  +       ++++ + + QV+ NL+ NA+KFT   G++  +         Y 
Sbjct: 262 NNPSVDLICEDSVQSIIMYSERQRIIQVMANLIHNAIKFT-KSGKIRFSCRMEGTDEVYF 320

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G GI + E   + +SF +          G GLGL ++Q I+ N GG+  + S++ 
Sbjct: 321 YVSDTGIGIPKEEQQEIFSSFKKLD----REVPGTGLGLTLSQIIIQNLGGRAGLESEVN 376

Query: 464 EGVEVIAILPN 474
           +G     ++P 
Sbjct: 377 KGSTFWFVVPL 387


>gi|218458178|ref|ZP_03498269.1| phosphate regulon, two-component sensor histidine kinase protein
           [Rhizobium etli Kim 5]
          Length = 287

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +S F+A+ SHELRTPL ++ GF E I+       + +   +++G +      +  
Sbjct: 61  RIDRMRSDFVANASHELRTPLASLRGFIETIQ--GPAKNDQKAQAQFLGIMFDQTTRMSR 118

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L LSR+E   +   +  + L+ ++      L   A++  +EI   +      V  
Sbjct: 119 LVDDLLSLSRLELKSHIAPDEKVDLVPLLGHVRDSLVPLARDVGVEINLHLPDGKVEVLG 178

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NL+ NA K+   G  V V +   +G    +SI D GPGI    +P +   
Sbjct: 179 DRDELVQVFENLMENACKYGQEGKVVDVRLKNGAGGPVEVSIIDKGPGIPAEHVPRLTER 238

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F + SI    +++G GLGL I + I+  H  + +++S++ +G +     
Sbjct: 239 FYRVSIEDSRSKKGTGLGLAIVKHILTRHRARLIVKSEVGKGTDFTVRF 287


>gi|295109067|emb|CBL23020.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 658

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 135/249 (54%), Gaps = 8/249 (3%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           +     +RAEE + AKS FL +MSH+LRTP+NAI+G++E++E         E    Y+  
Sbjct: 271 MLKNALRRAEEGSRAKSSFLFAMSHDLRTPMNAIIGYAELMEAHWGEK---EAATNYLQK 327

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +  + Q LL LI  +L+++RIE+G+  L+E+  +L+ +     I+L      K + + + 
Sbjct: 328 LKGASQFLLALIGNVLEIARIESGKETLNEAPWNLMKLEETLDILLDREISRKQLTVNRN 387

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDN 408
           ++   ++V+ D   +R++I+NLLSNAVK+TA GG++ + +              I + DN
Sbjct: 388 VNIRHANVYCDALKIREIIMNLLSNAVKYTAEGGKIVLDIEEKPSVQDDFMTLQIRVSDN 447

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI++  IP +  +F +   + +S   G GLGL I +S +    G   + S+  +G   
Sbjct: 448 GIGISKEYIPHIFDAFTRERSSSESGIIGTGLGLHIVKSFVDLMNGDISVESESGKGTCF 507

Query: 469 IAILPNTRV 477
              +   +V
Sbjct: 508 TVEISCRKV 516


>gi|237803884|ref|ZP_04591469.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025864|gb|EGI05920.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 402

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 10/251 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 67  ISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 126

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 127 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGLA 182

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++ +   +D  + + V  D    +Q++ NL+SNA+KFT  G  ++ +  G T+    
Sbjct: 183 RQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQDGQVKISLQAGDTAAPQQ 242

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++ ++D+G GI+  +   +   F Q     + A  G GLGL I +S+    GG   +
Sbjct: 243 LHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNLQL 302

Query: 459 RSKLREGVEVI 469
            S   +G  V 
Sbjct: 303 DSAPGQGTRVS 313


>gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 364

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +E   +AE+    KS FLA++SHE+R PLNAI+GFS ++  E  G L     +EYI 
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYIN 182

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  + + LL ++N++LDL+++E+G          L  ++ E +   Q++     + +  
Sbjct: 183 LIQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTY 241

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   + +D   ++QV+ N ++NA+K+T+IG  +             +S+ D G G+
Sbjct: 242 PASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIIL--SYQAMENEVLLSVTDTGEGM 299

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +E     V   F +G    ++ +QG+GLGL I Q+I+   GG+  + S+  +G      L
Sbjct: 300 SEEIKLHVFDRFYKG----RNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTL 355

Query: 473 P 473
           P
Sbjct: 356 P 356


>gi|239817343|ref|YP_002946253.1| histidine kinase [Variovorax paradoxus S110]
 gi|239803920|gb|ACS20987.1| histidine kinase [Variovorax paradoxus S110]
          Length = 593

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 162/429 (37%), Gaps = 20/429 (4%)

Query: 47  RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
                  +FVL++         +P+   + ++ L +Y       +   +          W
Sbjct: 24  ATFLARVVFVLVLGAFMYLQLGDPMVLPFVVLHLTLYLGMYFTPRWNPSVPAADSAW--W 81

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
              +      +G    L   +                 +++     A+ +     A    
Sbjct: 82  ARRITRIVTLLGFADALAPWIFVPAGNL--PVTAALMVVMMGNCARAVQSLRPLQAALFG 139

Query: 167 -FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
              P++  L          + + LA   +  L     +     +     L  + EK+ L 
Sbjct: 140 HTLPMMGGLIVALAWQRDSIHLFLAAFASIYLFLMLRVGVQEHRLLADSLVLRFEKEALA 199

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
             LE   + +       E  +  K+RFLAS SH+LR PL+AI  F   +E E  G     
Sbjct: 200 VRLEEQIAAT-------ERASQEKTRFLASASHDLRQPLHAIALFGAALENELRGRPEEL 252

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             +  +  ++  G  L  +    LD+SR++AG       A+ L  +          +A++
Sbjct: 253 NAQRLMRAVNALGASLDIM----LDISRLDAGVVTPVRQAVQLDALFLPLNHTFSAQAEQ 308

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K +++  +       V +D + + +++ NLL NA+K+TA GG V VT     G   +I +
Sbjct: 309 KQLQLRVRASG--LWVRSDPQLLHRMLSNLLDNALKYTARGG-VTVTA-RERGEFVWIEV 364

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GIA  +   +   F Q     +   +G+G+GL I Q +    G    + S+L  G
Sbjct: 365 RDTGIGIAPEQSSRIFEEFYQVDNPGRDRSRGLGIGLSIVQRLSHLLGHPVQMHSRLARG 424

Query: 466 VEVIAILPN 474
                +LP 
Sbjct: 425 THFRVVLPA 433


>gi|209918246|ref|YP_002292330.1| hybrid sensory histidine kinase TorS [Escherichia coli SE11]
 gi|209911505|dbj|BAG76579.1| two-component sensor kinase [Escherichia coli SE11]
 gi|324019115|gb|EGB88334.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 117-3]
          Length = 904

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|197119050|ref|YP_002139477.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088410|gb|ACH39681.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 141/389 (36%), Gaps = 28/389 (7%)

Query: 88  SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147
                +  +         W           GL + L  L                A L+ 
Sbjct: 91  WSRAAMEKAPPSPTHQRPWSWVAS-----SGLGFRLKALTITAPGH---------AYLIT 136

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
                A     L     +    V +AL    I    +    LA +   A          L
Sbjct: 137 VAEDEANLRASLKSLSTVLSLGVPLALVLALIGGYLLAGRVLAPIETMAGKAREITADRL 196

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             S    +    E   L        +  +E+  R         RF +  SHELRTPL AI
Sbjct: 197 --SERLPVEQDDEFGKLAQVFNQTFARLEESFDRL-------RRFTSDASHELRTPLTAI 247

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
               EV        L+ +  +E I  +      L  L++ +L LSR E+G  +L     +
Sbjct: 248 RSVGEV---GLRKGLDADALREVISSMLEEADRLTKLVDSLLTLSRAESGTLKLRPEPTN 304

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L+ +V E I  L++ A+EK   I   +    +    D   +RQ ++N+L NA+K++  G 
Sbjct: 305 LVALVSEVIECLEVLAEEKEQNIAL-MASQEAVADIDRGTIRQALMNVLDNAIKYSPQGS 363

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           R+ V V  ++     + + D GPGIA      V   F +          G GLGL IA+ 
Sbjct: 364 RISVCVEVSA-GEATVEVSDGGPGIAPEHAKKVFDRFYRIDSGRSREVGGTGLGLAIARW 422

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +  +GG+  + S+  +G     +LP   
Sbjct: 423 AVEVNGGRIELESEPGKGSIFRIVLPVRE 451


>gi|77745273|gb|ABB02537.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 495

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 148/355 (41%), Gaps = 17/355 (4%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200
             A + IA  +S +   M    + L    +  +L T A+         LA  +   +   
Sbjct: 153 MIAVVSIATFVSTIEQNMHQIKINLIMALLTASLVTLAV------SYFLARSITKRIDRL 206

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMS 257
              T+ + + N  +      +D++         ++   R+  +E       + +F+A+ +
Sbjct: 207 RMATHQIAQGNYNVEVDDNGRDEVAHLGRSFNQMTASLRESQQEIRWQEERRRQFMANAA 266

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL  I G  E ++      +  E  K  I  +    + L+ L+N+ LD  +I   
Sbjct: 267 HEMRTPLTPINGILEGLQ---YDAIPEEDKKHSIQLMQNDTRRLIRLVNDNLDYEKIRTN 323

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  +         ++      L  +A+EK   +   ++ +L  V+AD     Q++ N++ 
Sbjct: 324 QIAMERKVFDASAVLENLREQLAKKAKEKKDTLHLDVEKNL-RVYADYDRFVQIMFNIIQ 382

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQ 436
           NA++FT   G + +         Q++ ++DNG G+   ++  +   + +   +   +   
Sbjct: 383 NAIQFT-DNGIIDIRGKRVEKGSQFV-VQDNGIGMTPEQLENIWERYYKADRSRMNTKYG 440

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHESTQ 490
             GLGL I + ++  HGG+  ++S+  +G       P      + IP  N++  +
Sbjct: 441 ESGLGLAIVRQLVLLHGGKIDVKSQYGKGTTFTIFFPDREYAPHNIPPTNNKDKK 495


>gi|332519219|ref|ZP_08395686.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332045067|gb|EGI81260.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 507

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 12/226 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ F+A+ SHELR PL  IL FS+++    + P      K+YI  ++ S   L  +I++I
Sbjct: 136 KNTFIANFSHELRDPLTGILTFSDILSKTQLDP----QQKDYIQILNSSSSFLKQMIDDI 191

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD+S+IEAG+ EL+    +L +++ E  +   ++AQ+K+I+   K D +L  +   D K 
Sbjct: 192 LDISKIEAGKLELTIDPFNLKELLEEIKLNYIIKAQQKSIDFNYKFDENLPEIVGGDSKR 251

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           +RQVI NLL NA+KFT   G V + V            +  IKD G GI E     + +S
Sbjct: 252 LRQVITNLLDNAIKFTHT-GSVTLAVSLNQIRAQKASIHFEIKDTGIGIKEEHFNDIFSS 310

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           F Q +       +G GLGL I + ++     +  + SKL +G    
Sbjct: 311 FTQVN--ENDNYKGTGLGLAIVKHLVELSNSKINVESKLGKGSTFS 354


>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1347

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 11/261 (4%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            E+  +  D+ R++  E N  K RF  ++SHELRTPL  IL        E +  +N+    
Sbjct: 808  EIQMAQIDKERQK--EVNEMKLRFFINISHELRTPLTLILAPLH----EMLNKVNDRWQH 861

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  + ++   LL+L+N++LD  + E G + L      +  I+ +     +  AQ K I
Sbjct: 862  KQLELMKQNATRLLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRFYEALAQRKGI 921

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +     +     +  D   +  ++ NLLSNA K T  G  + V++   +G    + +KD 
Sbjct: 922  QYDFCSEVEDKEILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLK-DTGNNLLLQVKDT 980

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   E   +   F Q   +      G G+GL + Q ++  H G   + S    G   
Sbjct: 981  GNGIPLEEQKKIFERFYQVKSSHT----GSGIGLSLVQRLVELHHGHIELDSAEGVGSTF 1036

Query: 469  IAILPNTRVLNFIPEDNHEST 489
               LP  +      E   EST
Sbjct: 1037 SIFLPIDKKFYRPEEFQQEST 1057


>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
 gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
          Length = 1347

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 11/261 (4%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            E+  +  D+ R++  E N  K RF  ++SHELRTPL  IL        E +  +N+    
Sbjct: 808  EIQMAQIDKERQK--EVNEMKLRFFINISHELRTPLTLILAPLH----EMLNKVNDRWQH 861

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  + ++   LL+L+N++LD  + E G + L      +  I+ +     +  AQ K I
Sbjct: 862  KQLELMKQNATRLLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRFYEALAQRKGI 921

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            +     +     +  D   +  ++ NLLSNA K T  G  + V++   +G    + +KD 
Sbjct: 922  QYDFCSEVEDKEILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLK-DTGNNLLLQVKDT 980

Query: 409  GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
            G GI   E   +   F Q   +      G G+GL + Q ++  H G   + S    G   
Sbjct: 981  GNGIPLEEQKKIFERFYQVKSSHT----GSGIGLSLVQRLVELHHGHIELDSAEGVGSTF 1036

Query: 469  IAILPNTRVLNFIPEDNHEST 489
               LP  +      E   EST
Sbjct: 1037 SIFLPIDKKFYRPEEFQQEST 1057


>gi|229592506|ref|YP_002874625.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229364372|emb|CAY52146.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
          Length = 747

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 146/330 (44%), Gaps = 11/330 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S               L      ++ ++K 
Sbjct: 416 ASGVLAMSLPKPVDNGVLWFRPEVKENINWSGDPTKPLDLENSDAGLRLRPRTSFEIWKV 475

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEEENLAKSRFLASMSHELRTPLNA 266
            +  +S +    DL A  ++ +S    D  R+  R ++   A+   +A +SH+LR P+  
Sbjct: 476 EMAGISTKWSHGDLFAANDLRRSALENDLARQVQREQQAVRARDELVAVVSHDLRNPMTV 535

Query: 267 ILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      I  + ++   +  L+ ++LD S+IEAGRY +   
Sbjct: 536 ISMLCGMMQKAFSSDGPHTSRRISSAIDTMQQAAARMNVLLEDLLDTSKIEAGRYVVKPV 595

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           A+ +  +  E   +L   A EK I++    +P L  +  D + + QV+ NL+ NA+KFT 
Sbjct: 596 ALDVSQMFEEAYSLLAPLAMEKGIDLSFNAEPGL-QINGDPERLFQVLSNLIGNAIKFTP 654

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + ++   ++G     S++D+G GIA  ++P V   +       ++   G GLGL I
Sbjct: 655 RQGNIGISA-MSNGEEIVFSVRDSGEGIAPEQLPHVFDRYW---TQTENNPTGSGLGLYI 710

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            Q I+  HGG+ +  S++  G E    +P 
Sbjct: 711 TQGIVQAHGGKIVAESEVGRGSEFRFTVPR 740


>gi|213968569|ref|ZP_03396711.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato T1]
 gi|301385791|ref|ZP_07234209.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061465|ref|ZP_07253006.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato K40]
 gi|302133073|ref|ZP_07259063.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926502|gb|EEB60055.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato T1]
          Length = 744

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 12/353 (3%)

Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
           P   +    ++Y  A     L+   L    LP  V          +      S       
Sbjct: 397 PVYASHHLSSVYPPAEAYQTLASGVL-AMSLPKPVDNGVIWFRPEVKQSVQWSGDPNKPL 455

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEE 244
                   L      ++ ++K  +  ++ +    D+ A  ++ +S    D  R+  + ++
Sbjct: 456 NLDASDNTLRLQPRTSFEIWKVEMTGIATKWSHGDVFAANDLRRSALENDLARQVSKEQQ 515

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELE--TMGPLNNETYKEYIGDIHRSGQHLL 302
              A+   +A +SH+LR P+  I     +++    + GP  +      I  + ++   + 
Sbjct: 516 AVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTAIDTMQQAASRMN 575

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++LD S+IEAGRY ++   + +  I  E   +L   A +K+IEI    +P +  V 
Sbjct: 576 VLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDI-KVN 634

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
           AD + + QV+ NL+ NA+KFT   GR+ V    ++G     +++D+G GI   ++P +  
Sbjct: 635 ADPERLFQVLSNLIGNAIKFTPKLGRIGV-AAMSNGDEVVFTVRDSGEGIPPEQLPHIFE 693

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +        +   G GLGL I+Q I+  HGG+   +S++  G E    +P  
Sbjct: 694 RYWTVKEGNPT---GTGLGLYISQGIIKAHGGELAAQSQVGHGSEFRFTVPIA 743


>gi|291541286|emb|CBL14397.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 903

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 184/433 (42%), Gaps = 43/433 (9%)

Query: 54  LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113
           ++ + +     +           +  L        L  +                  L  
Sbjct: 25  IYTVYMVVAAVYLKWPSWVAAVIICGLLASIGLRMLTGRYSR---------------LAK 69

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVV 172
                + W  + L    T               +A S+  LS F L    ++S    +++
Sbjct: 70  LFCSVMIWMNIILYTVFTDGSS------LTMATVAASVVMLSLFDLIEINYVSLAATILL 123

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232
                 ++     D  +  M      F   I        ++I+  +  K+ +  ++E   
Sbjct: 124 FCLDTFLLDKVNYDNPIREMEFFMQFFAIII--------LEIMENKQLKNRIQHDME--- 172

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +ET +  E+   AK  F+A++SHE+RTPLN+I+G    I  E +    ++T KE + 
Sbjct: 173 --FNETMRELEDAKQAKDDFMANISHEIRTPLNSIIG----IGSELLDAKVDDTTKEQLY 226

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           DI  +G++L++L+++ILD S +E    EL E   ++  ++ + + M  +  +EKN+EI  
Sbjct: 227 DITVAGRNLMSLVSDILDFSELENDTMELVEEPYNITSVINDVVNMAHVWNKEKNLEIIV 286

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR-GQYISIKDNG 409
             +  + + +  D + + ++ILNL++NA+KFT  GG +  V     S      + +KD G
Sbjct: 287 DCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAGGVILFVGARKESYGINLMVKVKDTG 346

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            G++E  I  +  ++ Q          G+GLGL I++ ++A   G   I S    G  V 
Sbjct: 347 IGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAISRKMIAKMNGHMHIESVPDAGTTVS 406

Query: 470 AILPNTRVLNFIP 482
            I+P  RVL  +P
Sbjct: 407 IIIP-QRVLTDMP 418


>gi|260580898|ref|ZP_05848722.1| aerobic respiration control sensor protein [Haemophilus influenzae
           RdAW]
 gi|260092387|gb|EEW76326.1| aerobic respiration control sensor protein [Haemophilus influenzae
           RdAW]
          Length = 598

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|146343763|ref|YP_001208811.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146196569|emb|CAL80596.1| putative sensor histidine kinase with a response regulator receiver
           domain and a phosphotransferase (HPt) domain
           [Bradyrhizobium sp. ORS278]
          Length = 850

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 13/247 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS F+A MSHE+RTP+NA+LG +  +    +    +   +  +  IH +G +LL ++N+I
Sbjct: 329 KSTFVAMMSHEIRTPMNAVLGLATTLLETNL----DPEQRRSVVAIHNAGDNLLEILNDI 384

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKG 367
           LD S++E+G+  L + A S   +V   + ++  RA  K++++    DP+   ++  D   
Sbjct: 385 LDFSKLESGQLSLEDIAFSAEALVHNTLSIIGPRASAKDLKLRNVSDPAVPPALVGDAGR 444

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTS 423
           +RQ++LNL+SNAVKFT+  G V +T               ++ D G GIA  +I ++  +
Sbjct: 445 IRQILLNLVSNAVKFTSA-GEVVITTRCIEKDQAKATVEWTVTDTGIGIAADKIGSLFAN 503

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFI 481
           F Q   +I     G GLGL I + +    GG+  + S L +G        LP    +  +
Sbjct: 504 FVQADNSISRRFGGSGLGLAICKRLTEQMGGEINVTSTLGKGSTFSFRLTLPIAEAV-AV 562

Query: 482 PEDNHES 488
           PE N +S
Sbjct: 563 PEQNDDS 569


>gi|293409372|ref|ZP_06652948.1| TMAO reductase system sensor TorS [Escherichia coli B354]
 gi|291469840|gb|EFF12324.1| TMAO reductase system sensor TorS [Escherichia coli B354]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++           T ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLSDNPALN----TQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPTKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|229102610|ref|ZP_04233314.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
 gi|228680837|gb|EEL35010.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
          Length = 444

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 25/307 (8%)

Query: 184 VLDISLAGMLATALSFFTY--ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----E 237
           +++I +  +    +       I+  L  S V+ +    +    IAE  +   + +    E
Sbjct: 147 IIEIIMFTIAVGIVISCIVFSISRRLANSFVEPIESIIQASSQIAEGTLKNKIKEDYPGE 206

Query: 238 TRKRA----------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             + A          E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  
Sbjct: 207 LGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVEHLTEEEI 264

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A++K 
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 324

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I+    I+     +  D   ++Q+ LN++ NA+K++   G V++      G+   I +KD
Sbjct: 325 IQFINTIER--IELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQ-AVIKVKD 381

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GIA+  +P +  SF Q +        G GLGL I + ++  H G   I SK   G  
Sbjct: 382 EGIGIAKEHLPYIEQSFYQINNHAA----GAGLGLAIVKKMVELHRGTLSIVSKEGIGTT 437

Query: 468 VIAILPN 474
           ++  LP 
Sbjct: 438 ILIKLPL 444


>gi|288574524|ref|ZP_06392881.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570265|gb|EFC91822.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 615

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTP+N +LG + +       P      +EY+ D   +G+ LL LI+ ILDL
Sbjct: 238 FLANMSHEIRTPINVVLGMTNLALESADIPDGP---REYLEDARLAGRELLKLIDGILDL 294

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           SR+E+G   LS  +  L ++ R  + M ++R     + I    D      V  D   MRQ
Sbjct: 295 SRVESGEMSLSLESCDLYELCRSVMDMTRVRNSSDELAIELVFDEYAPRLVKCDTLRMRQ 354

Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQG 427
           V+L L  NAVKFT  G   + V++   +     I   +KD G GI+E +   +  +F Q 
Sbjct: 355 VLLILTENAVKFTERGSVTLVVSMVRRAEGEATIRFAVKDTGIGISEDKRDHIFGTFYQV 414

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             +     +G GLGL IA+ I+   GG+  ++S+  +G      +P 
Sbjct: 415 DDSRSKRHKGAGLGLSIAKQIVEIMGGRLWLKSEEGKGSTFFVDVPL 461


>gi|218134297|ref|ZP_03463101.1| hypothetical protein BACPEC_02190 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991672|gb|EEC57678.1| hypothetical protein BACPEC_02190 [Bacteroides pectinophilus ATCC
           43243]
          Length = 481

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 4/235 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            + ++  F++++SHEL+TP+ ++   ++ +  +   P+  E Y+E++ DI         +
Sbjct: 251 LDESRQEFVSNVSHELKTPITSMKVLADSLNTQEDVPV--ELYREFMADIVEEIDRESKI 308

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++L L +++     L+ S++++ +++   +  L+  AQ+KNIE+  +          D
Sbjct: 309 IDDLLSLVKMDKSSMTLNISSVNINELLELILKRLKPIAQKKNIELLFE-SFRPVVAEID 367

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           E      I NL+ NA+K+    G VHV++     R  Y+ ++DNG GI +     V   F
Sbjct: 368 EVKFTIAISNLVENAIKYNRDNGWVHVSLNA-DHRYFYVRVEDNGIGIPQESQKMVFERF 426

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            +   A      G GLGL I ++ +  H G   + S+   G      +P   V  
Sbjct: 427 YRVDKARSRQTGGTGLGLSIVRNAVLMHHGAIRLHSEEDVGTTFTVRIPLNYVPE 481


>gi|156977382|ref|YP_001448288.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528976|gb|ABU74061.1| hypothetical protein VIBHAR_06169 [Vibrio harveyi ATCC BAA-1116]
          Length = 1225

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 7/259 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    D I+EL+  ++    +  +A +   A+  FLA +SHELRTP+ A++G  E++E
Sbjct: 660 QYRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLE 719

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +     +    KE +    +S + L   +N+ILD S+I+A + +L     ++   +   
Sbjct: 720 QDVERKES----KELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGAT 775

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +   +   + K++       P+  ++ A D   + Q+I NLLSNAVKFT   G+V V+V 
Sbjct: 776 LRSFEKIIERKSLAFELNWTPTPHALVALDWLRVNQIINNLLSNAVKFTKE-GKVIVSVH 834

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            +  +     ++D G G+   ++ T+   F QG  +      G GLG+ I +S++    G
Sbjct: 835 VSPNQ-LEFKVQDTGCGMNNAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEG 893

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S+  +G  +   LP
Sbjct: 894 TIEVDSQTEQGTTITVRLP 912


>gi|86132461|ref|ZP_01051055.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|85817022|gb|EAQ38206.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 351

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 28/347 (8%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT-ALSFFTYITYH-------- 206
           +F L  A +++    ++ +  + I     +   +   +    +  F  I +         
Sbjct: 10  SFALITAAYITVLFALLIILLEFIQDSEPVWWLVGLGVLGCYILSFLLIHFRTQLFIFKK 69

Query: 207 ----------LFKSNVKILSCQAEKDDLIAELEV---AKSLSDETRKRAEEENLAKSRFL 253
                     L   ++   +   +   L  E+E    +K +  E+ +  EE    +  FL
Sbjct: 70  VREIYDNVKLLEDVSLTADNITTDMASLSEEVERYAKSKKIEIESLRVQEE---YRRNFL 126

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            +++HEL+TPL  + G+   +    +   +    K+Y+    +    L+ L+N++  +++
Sbjct: 127 GNVAHELKTPLFTVQGYILTLLDGAI--KDKSVRKKYLSRAEKGVDRLIYLVNDLDMITK 184

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVI 372
           +E G   ++     L+ ++     ML++ A ++NI +           V AD++ ++Q++
Sbjct: 185 LEVGDLNINYEYFDLVKLIYATFEMLEMEAAKRNITLAFDDSYAKEVMVNADQERIQQLL 244

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NL+ N++K+    G   V++         I I DNG GI    +P +   F +   +  
Sbjct: 245 TNLIGNSIKYGNENGTTEVSIQDLIQNKLLIRITDNGEGIEPDHLPRLFERFYRVDKSRN 304

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
               G GLGL I + I+  H  +  + S+   G E    L    V+ 
Sbjct: 305 RRVGGSGLGLSIVKHIIEAHEEKVYVESEFGVGSEFSFTLEKAEVIE 351


>gi|163848410|ref|YP_001636454.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163669699|gb|ABY36065.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 403

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 21/248 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              A+   +A++SHELRTPL ++     ++          +     +  + +    +  L
Sbjct: 160 LERARRDLVANVSHELRTPLASLK----LLVETVQSAPPPDIASRMLEQMAQEIDAVTQL 215

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++E+ +LSR+E+GR  L    + +  ++   +  ++ +A  K   I  +    L     D
Sbjct: 216 VDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMD 275

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------------SGRGQYISIKD 407
              + QV+LNLL NAVKFT  GG + V                      +G    I + D
Sbjct: 276 GDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSD 335

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +I  +   F +   A      G GLGL IA+ ++  HGG+    S+   G  
Sbjct: 336 TGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGST 395

Query: 468 VIAILPNT 475
               LP  
Sbjct: 396 FWFTLPAA 403


>gi|239831142|ref|ZP_04679471.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
 gi|239823409|gb|EEQ94977.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
          Length = 430

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/463 (20%), Positives = 169/463 (36%), Gaps = 38/463 (8%)

Query: 16  ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75
           +S  G+H G E  ++      ++ +          ++   VL V  +          P W
Sbjct: 1   MSEAGNHTGPEPEAEKSIFEPLLRVK-------GVVIASMVLAVCVLALD------LPFW 47

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135
               L       ++      +  +  EV +  I         G     L       +   
Sbjct: 48  FRAGLLALVVLGAVWLASEVASSEPDEVPIKNIAPNEMAGVSGERLADLLTDPMVVFDHG 107

Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195
              ++ ++  + A         +          P + AL    I       I        
Sbjct: 108 GTVLFTNSAAIEAFQSLKTGTALYLR----FRAPEMHALIQGVIADGEARSI-------- 155

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              F        FK+ VK L  +  + +L   L   +S +          +  +S F+A+
Sbjct: 156 -EYFERVPIDRWFKAMVKALPGKDGRPELFVLLFRDQSETR-------RIDRMRSDFIAN 207

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
            SHELRTPL ++ GF E ++       +      ++  + +  + +  LI+++L LSR+E
Sbjct: 208 ASHELRTPLASLRGFIETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLE 265

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
              +      + +  I+      L   A   +I I + +      V      + QV  NL
Sbjct: 266 MRAHLTVNECVDMTSILNHVADTLAPLAAGLDINIERVLPDHPVMVTGARDELIQVFQNL 325

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           + NA K+   G RV V +             SI+D GPGIA   +P +   F +  +   
Sbjct: 326 VENACKYGQAGKRVIVKLDEDDSGSSPEVVASIQDFGPGIAAEHLPRLTERFYRIDVETS 385

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            A++G GLGL I + I+A H G+ ++RS+L EG      LP  
Sbjct: 386 RAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTVRLPKR 428


>gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
 gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
          Length = 748

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FL+ MSHE+RTP+NAILG S +       P   +   E I  I  S + LL LIN+I
Sbjct: 355 KTDFLSRMSHEIRTPMNAILGMSAIAAQSLNDP---DRVGECIEKIQLSSRFLLGLINDI 411

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LD+SRIE+G+  L+   +    ++     +   +A  K +     +DPSL +    D   
Sbjct: 412 LDMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCVVDPSLQTEYTGDSMK 471

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTS 423
           ++QV++N+LSNAVKFT  GG V +                 I+D G GI+   +P +   
Sbjct: 472 LQQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDTGVGISPEFLPHLFEP 531

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           F Q S    +A  G GLGL I++S++    G+  +RS+  +G E I 
Sbjct: 532 FSQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRSEKGKGTEFII 578


>gi|148993836|ref|ZP_01823238.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489054|ref|ZP_02713253.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194398370|ref|YP_002037827.1| histidine kinase [Streptococcus pneumoniae G54]
 gi|147927661|gb|EDK78686.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572355|gb|EDT92883.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194358037|gb|ACF56485.1| histidine kinase TCS02 [Streptococcus pneumoniae G54]
 gi|332073564|gb|EGI84043.1| sensory box protein [Streptococcus pneumoniae GA17570]
          Length = 449

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSLLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|323967240|gb|EGB62664.1| TMAO reductase sytem sensor TorS [Escherichia coli M863]
          Length = 914

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVVEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R +++ I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GHIILR-SRTDGEQWLLEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 676


>gi|309776880|ref|ZP_07671850.1| sensor histidine kinase/response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915291|gb|EFP61061.1| sensor histidine kinase/response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 658

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
           A     AKS FLA+MSHE+RTPLN I+G   +++     P   +  KEY+   + S Q+L
Sbjct: 276 ASASEKAKSAFLANMSHEIRTPLNGIIGLQYLMQQNIEHP---DKLKEYLEKANVSSQYL 332

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSS 360
            ++I ++L++S+IE+G+ EL +   +L+D+++E  +++ ++A+E   +          ++
Sbjct: 333 KSVITDVLEMSKIESGQLELYQKPFNLLDMIQEIHMIIGVQAEEHKQQFTLDTTQIHSTA 392

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416
           + ADE  ++QV++NLL NA+KFT   G++ + V     +         I D G G+++  
Sbjct: 393 LLADEVRIKQVLINLLGNALKFTPEKGQISLQVEQQPEKDGIVPTKFVITDTGCGMSDEF 452

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +  +   F Q      +++ G GLG  +++ ++    G   + S+L +G      LP
Sbjct: 453 LQRIWNPFEQEH--RMASQNGTGLGTTLSKILVEKMDGSIQVESELGKGTCFTIQLP 507


>gi|301162296|emb|CBW21841.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 792

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +      ++ AE+  L K  FL +MSHE+RTPLNAI+GF+ V+  E    ++ 
Sbjct: 538 IQESVEREHQLIVAKQMAEKAEL-KQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDP 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +     +  I+ + + LL LIN++L++SR+++G  +      ++ DIV+E     Q   +
Sbjct: 597 DEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIR 656

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402
              ++   ++D ++   V  D     QVI N L+NA KFT   G + +            
Sbjct: 657 SS-LQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIALGCKVDKKHREVR 714

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D+G GI E E+  +   F +        EQG GLGL I++ I+    G+  + S+ 
Sbjct: 715 IYVEDSGKGIDEKELMMIFERFYKTDE----FEQGSGLGLAISKVIIERLSGRIKVHSEK 770

Query: 463 REGVEVIAIL 472
            +G     IL
Sbjct: 771 GKGSCFTVIL 780


>gi|300823946|ref|ZP_07104069.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7]
 gi|300523578|gb|EFK44647.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|260449861|gb|ACX40283.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
          Length = 899

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 316 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 375

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 376 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 435

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 436 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 491

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 492 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 551

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 552 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 608

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 609 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 661


>gi|253563388|ref|ZP_04840845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251947164|gb|EES87446.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 792

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +      ++ AE+  L K  FL +MSHE+RTPLNAI+GF+ V+  E    ++ 
Sbjct: 538 IQESVEREHQLIVAKQMAEKAEL-KQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDP 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +     +  I+ + + LL LIN++L++SR+++G  +      ++ DIV+E     Q   +
Sbjct: 597 DEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIR 656

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402
              ++   ++D ++   V  D     QVI N L+NA KFT   G + +            
Sbjct: 657 SS-LQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIALGCKVDKKHREVR 714

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D+G GI E E+  +   F +        EQG GLGL I++ I+    G+  + S+ 
Sbjct: 715 IYVEDSGKGIDEKELMMIFERFYKTDE----FEQGSGLGLAISKVIIERLSGRIKVHSEK 770

Query: 463 REGVEVIAIL 472
            +G     IL
Sbjct: 771 GKGSCFTVIL 780


>gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 788

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 283 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTNLTA----EQEKYLKTIHVSA 338

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 339 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 398

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 399 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 457

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 458 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 517

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 518 VAEEVEDAFDED 529


>gi|221308190|ref|ZP_03590037.1| hypothetical protein Bsubs1_02123 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312512|ref|ZP_03594317.1| hypothetical protein BsubsN3_02109 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 472

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 15/338 (4%)

Query: 140 YKSATLLIALSISA--LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
           +K A LLI+       + N +  Y  +     +V+ +    ++S   +        AT  
Sbjct: 142 FKGAVLLISPISGVEQMVNQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDK 201

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   HL  S         E   L ++  +      ++R   E     + +F+A +S
Sbjct: 202 VASGDYDIHLENS------YGDEIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVS 255

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL  I G  E +       +  +   +    I    + +L L+ E LD  +I + 
Sbjct: 256 HELKTPLTTINGLVEGLNSH---TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQ 312

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  L++  + LI++       LQ +A+EK  ++  +++     V AD     Q+++N+  
Sbjct: 313 QITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQVE-DHVIVHADYDRFIQILVNITK 371

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQ 436
           N+++FT   G + +  G    +   I I+D G GI + +I  +   F +  I+   +A  
Sbjct: 372 NSIQFT-QNGDIWLR-GMEGYKETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYG 429

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             GLGL I + ++  H G   I+S+  +G + I  LP 
Sbjct: 430 EYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLPL 467


>gi|115375537|ref|ZP_01462796.1| SocD [Stigmatella aurantiaca DW4/3-1]
 gi|115367492|gb|EAU66468.1| SocD [Stigmatella aurantiaca DW4/3-1]
          Length = 546

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 16/327 (4%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-- 215
            L   +      +V A++   + +        A +       +  +      +++  +  
Sbjct: 211 GLMRVLRTGESELVPAVTDSLLRAAAAEPYHPALLTQLQAGSYMIVPLRARGNSLGAVTF 270

Query: 216 -------SCQAEKDDLIAEL-EVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLN 265
                      E   L  +L + A    D  R    +     A+   LA +SH+L+ PL 
Sbjct: 271 VSSGSGRRYGPEDLALAEDLCQRASLAIDNARLFGESRRATRAREDLLAVVSHDLKNPLG 330

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +   + ++  E      +E   ++   I  +    L LI+++LD  R+E GR  L    
Sbjct: 331 VVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRALRLISDLLDWGRLEEGRLPLETRE 390

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           +    +V E +  ++  A+   +++  ++   L  V  D   + QV+ NLL NAVKFT  
Sbjct: 391 VDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVVCDRGRVLQVLGNLLGNAVKFTDP 450

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGRV V    T G    + ++D G GI   ++  V   + Q   ++     G GLGL IA
Sbjct: 451 GGRVTVGA-RTQGDEARLYVRDTGKGIPPEQLSYVFDRYWQAKDSVSR---GTGLGLAIA 506

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
           + ++  HGG+   +S L EG      L
Sbjct: 507 KGLVEAHGGRIEAQSTLGEGSTFSFTL 533


>gi|53712586|ref|YP_098578.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52215451|dbj|BAD48044.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 792

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E    +      ++ AE+  L K  FL +MSHE+RTPLNAI+GF+ V+  E    ++ 
Sbjct: 538 IQESVEREHQLIVAKQMAEKAEL-KQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDP 596

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +     +  I+ + + LL LIN++L++SR+++G  +      ++ DIV+E     Q   +
Sbjct: 597 DEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIR 656

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402
              ++   ++D ++   V  D     QVI N L+NA KFT   G + +            
Sbjct: 657 SS-LQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIALGCKVDKKHREVR 714

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++D+G GI E E+  +   F +        EQG GLGL I++ I+    G+  + S+ 
Sbjct: 715 IYVEDSGKGIDEKELMMIFERFYKTDE----FEQGSGLGLAISKVIIERLSGRIKVHSEK 770

Query: 463 REGVEVIAIL 472
            +G     IL
Sbjct: 771 GKGSCFTVIL 780


>gi|126462327|ref|YP_001043441.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332558349|ref|ZP_08412671.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
 gi|126103991|gb|ABN76669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276061|gb|EGJ21376.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
          Length = 346

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A+LGF E ++       +      ++G + R    + 
Sbjct: 110 EQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAGRMN 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E+      ++ + +  ++ + I  L+  A+   +EI ++ +     + 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGE 416
            D   + QV  NL+ NAVK+ A G  V V +               I + D G GI    
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P +   F +        + G GLGL I + I+  H G+FLI S+L +G   I  LP  
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLPLA 346


>gi|269128962|ref|YP_003302332.1| multi-sensor hybrid histidine kinase [Thermomonospora curvata DSM
           43183]
 gi|268313920|gb|ACZ00295.1| multi-sensor hybrid histidine kinase [Thermomonospora curvata DSM
           43183]
          Length = 1248

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 10/259 (3%)

Query: 239 RKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
           R+RAEE    + AK+ FL+ +SHE RTPL  I+G  E +             ++ +  IH
Sbjct: 325 RRRAEELAELDRAKTVFLSDISHEFRTPLTLIMGPVEELRARLQDA--EPWVRKDLEVIH 382

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+G  L  L++ +LD +RIEAGR E       L     +   ML+   +   + +     
Sbjct: 383 RNGLRLSKLVDTLLDYARIEAGRMEARYQPTDLAVFTADLAGMLRTAIERAGLRLEVDCP 442

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
           P    V+ D     +V+L+LLSNA+KFT   G + V +         + + D G G+++ 
Sbjct: 443 PLPEPVYVDRSMWEKVVLSLLSNALKFTFE-GSIAVRL-RAEDGQAVLQVSDTGVGVSQK 500

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           ++P +   F +       + +G G+ L + + ++  HGG     S   +G      LP  
Sbjct: 501 DLPRLFERFQRIEAPRTRSIEGDGVALALVRELVRLHGGTITADSTPGKGTTFTVRLPFG 560

Query: 476 RVLNFIPEDN-HESTQYKC 493
                +P+ +    ++Y+ 
Sbjct: 561 --HAHLPQASLAPESEYRG 577


>gi|187933470|ref|YP_001886701.1| sensor histidine kinase/response regulator [Clostridium botulinum B
           str. Eklund 17B]
 gi|187721623|gb|ACD22844.1| sensor histidine kinase/response regulator [Clostridium botulinum B
           str. Eklund 17B]
          Length = 510

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 10/298 (3%)

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDE 237
            ++       +G +         I Y L  + +K L    EK    L  E+E  + L D 
Sbjct: 215 FTIKPPLWKSSGAIFVYFIMIILIIY-LSITKLKNLDRMVEKRTKQLRDEMEKNRRLFD- 272

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIH 295
              +  +    K+ +  ++SHELRTPLN I    ++I    +    ++ E    Y+  I 
Sbjct: 273 ---KVIDLERRKNNYFVNLSHELRTPLNVISSTEQLISELNKQYDGIDKEKLSYYMKIIK 329

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           R+   LL LIN I+D ++IE+GRYE++     ++ +V E  + L+   + K I +    +
Sbjct: 330 RNSNRLLKLINNIIDTNKIESGRYEMNLKENDIVYLVEETSLSLKDYIENKGIHLIIDPE 389

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
                +  D   + + I+NL+SNA KFT  GG + VT+   +     I++KD G GI   
Sbjct: 390 MEEKIIICDSYEIERCIVNLVSNAAKFTPEGGEIKVTLKELNNN-VIITVKDTGIGIDPK 448

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               V   F Q   A   ++ G GLGL I + I+  H G+  + S + +G E   ILP
Sbjct: 449 YHKAVFDRFNQIIDANSESKGGSGLGLTITKHIIDLHKGKIYVNSDIGKGCEFAIILP 506


>gi|170026131|ref|YP_001722636.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
 gi|169752665|gb|ACA70183.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 939

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L           + +  L++ +     +    P+   ++
Sbjct: 271 LKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFIN 330

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +        
Sbjct: 331 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEMKVKERTLALAK 386

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 387 AK--RAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 440

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 441 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 500

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 501 ADIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 558

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 559 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 614

Query: 475 TRVLNFIP 482
             +   +P
Sbjct: 615 NAITPPMP 622


>gi|301327172|ref|ZP_07220438.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1]
 gi|300846205|gb|EFK73965.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|114769299|ref|ZP_01446925.1| Probable two-component sensor histidine kinase [alpha
           proteobacterium HTCC2255]
 gi|114550216|gb|EAU53097.1| Probable two-component sensor histidine kinase [alpha
           proteobacterium HTCC2255]
          Length = 353

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 7/245 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E    +  F+A++SHELR+PL A+ GF E ++       + E  + ++  +      + 
Sbjct: 110 QEAEQMRHDFVANVSHELRSPLTALSGFVETLQGNA--ANDKEARERFLEMMSNEADRMA 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            LI ++L LS+++A         + L  I+      L   A+  +I++       +  V 
Sbjct: 168 RLIGDLLSLSKLQASERVAPTEQVDLFKILSSVSSSLSGLAERNSIKLKLNFSNFMPLVT 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTV 420
            +   + QV  NL+ NA+K++  G  V V+            ISI+D G GI   +IP +
Sbjct: 228 GNADELTQVFQNLIENAIKYSGNGSVVSVSFKPPKEGKSHLCISIEDTGEGIDPTQIPRL 287

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN---TRV 477
              F +       A+ G GLGL I + I+  H G   I S+L +G      LP     ++
Sbjct: 288 TERFYRVDKGRSRAQGGTGLGLAIVKHILIRHRGWLKISSQLGKGSIFAVYLPIFAEKKL 347

Query: 478 LNFIP 482
               P
Sbjct: 348 SQATP 352


>gi|50085581|ref|YP_047091.1| putative two-component sensor kinase [Acinetobacter sp. ADP1]
 gi|49531557|emb|CAG69269.1| putative two-component sensor kinase [Acinetobacter sp. ADP1]
          Length = 1154

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 25/367 (6%)

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           + +   L+++L I       L Y    ++   V   + Q + ++ +   ++  +L +  +
Sbjct: 570 LSQYILLMLSLGIILAVCLSLVYLQEKTYLETVNEQAIQQLFTLFLKIYTILFLLISVAA 629

Query: 199 FFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           ++  +     +   +    Q     D IA  E       + R  AE  N AKSR++  +S
Sbjct: 630 WWLVLNDESRRKAEQETQQQTSLLIDEIAAHEQTSQHLQDARILAERANEAKSRYVVGIS 689

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+ILG+S++++ +      +   +  +G I RSGQHL +LI+ +LDLSRIE G
Sbjct: 690 HELRTPLNSILGYSQLLQKQ---EQLSAQGQTALGVISRSGQHLTSLIDGLLDLSRIETG 746

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           +  L+   +   + + + I M + ++++K ++    +   L   V  D+K + Q+++NLL
Sbjct: 747 KISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTDQKRLEQILINLL 806

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI------- 429
            NA+KFT   G ++  VG+   +  Y  I D G GIA  ++  +   F +GS        
Sbjct: 807 GNALKFTNK-GSIYFKVGYR-FQTAYFEINDTGCGIAHHDLERIFNPFERGSNVVQGGFT 864

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNHE 487
                         I + ++   GGQ  + S+L +G +      LP+  V++  P  N +
Sbjct: 865 GTGLGLP-------IVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVVH--PITNVQ 915

Query: 488 STQYKCY 494
           S Q   Y
Sbjct: 916 SNQITGY 922


>gi|330718003|ref|ZP_08312603.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           fallax KCTC 3537]
          Length = 621

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 11/238 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F++++SHELRTPL ++  + + +    +   + E    ++G +    Q ++
Sbjct: 372 QRIDSERRMFVSNVSHELRTPLTSVRSYVDALADGAID--DPEMSHNFLGVVQDETQRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK--------NIEIFQKI 354
            +IN++L+LSR++ G  E+    ++L  +    +    +  +            +I ++ 
Sbjct: 430 RMINDLLELSRLDQGTMEVKLEIVNLNSLFNFVLDRFDMILENDAKKDNGNKQYKIQREF 489

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI  
Sbjct: 490 TKQDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTK-TRAILSISDEGLGIPR 548

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            ++  +   F +   +   A+ G GLGL I++ ++    G+  + S    G      L
Sbjct: 549 KDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFKGRIWVDSVENRGSTFYISL 606


>gi|253773977|ref|YP_003036808.1| hybrid sensory histidine kinase TorS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253325021|gb|ACT29623.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
          Length = 899

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 316 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 375

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 376 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 435

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 436 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 491

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 492 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 551

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 552 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 608

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 609 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 661


>gi|160902316|ref|YP_001567897.1| integral membrane sensor signal transduction histidine kinase
           [Petrotoga mobilis SJ95]
 gi|160359960|gb|ABX31574.1| integral membrane sensor signal transduction histidine kinase
           [Petrotoga mobilis SJ95]
          Length = 438

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 140/314 (44%), Gaps = 10/314 (3%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           V      ++++     ++   +     A      +        ++ ++N+        +D
Sbjct: 135 VLARLKMILISTGVLVMILAGIGGFFYADSSLKPVEKIINTAKNIEENNLTERIKVNSQD 194

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L         +      R E+    + +F A +SH+LRTPL+ I   S +         
Sbjct: 195 ELGRLASTLNQMIS----RLEKAFEQQKQFTADVSHDLRTPLSIIQAESSL---TLKKDR 247

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + + YK+ +  I     ++  +I+++L L+R +      + +  +L  ++ E I  +   
Sbjct: 248 SIDEYKKSLELILEETSYMSEIIDKLLFLARSDNKTQFYNFTKTNLKSLLEEVIKKVSPL 307

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K++ +  +    L ++ AD+  +++ ++N+L N++K+T   G+V ++     G    
Sbjct: 308 YHNKSLTLQVEKLEEL-NIRADKDKLKEALINILDNSLKYTDE-GKVTIS-SVKIGNFAK 364

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ISI+D G GI + ++  +   F +G  A  S+E+  GLGL I + I+  H G+  + S++
Sbjct: 365 ISIEDTGRGIPKEDLHRIFDRFYRGDKARTSSEKSTGLGLAIVKEIVNAHDGRIEVESEV 424

Query: 463 REGVEVIAILPNTR 476
            +G      LP  +
Sbjct: 425 GKGTVFSLFLPIEK 438


>gi|256044026|ref|ZP_05446937.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265990437|ref|ZP_06102994.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263001221|gb|EEZ13796.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 438

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVAASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 541

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 294 ITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 349

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 350 EEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 409

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +++I      +   +  D   + QVI+N  +NA+KFT+  G + +      +    Y 
Sbjct: 410 SPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSK-GSIEMGYRIEEASDEIYF 468

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG     SK  
Sbjct: 469 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGAESKEG 524

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P T  + 
Sbjct: 525 EGSCFWFKIPRTENIE 540


>gi|229017311|ref|ZP_04174215.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
 gi|228744012|gb|EEL94110.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
          Length = 392

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 143/272 (52%), Gaps = 10/272 (3%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262
           I +   +     L  Q ++D      E+A SL+     + E+    K+ F+AS+SHE+RT
Sbjct: 131 IIHASSQIAEGTLKEQIKEDYPGELGELAHSLNYMA-DKIEKAEQMKNEFIASISHEIRT 189

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           PL  I G+SE ++  T+  L +E  K+ +G I      L++L+ E+LD SR+++  + L 
Sbjct: 190 PLTGIKGWSETLK--TVDHLTDEEIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLY 247

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382
           +  + L DI+ E I  L  +++EK I++   ++     +  D   ++QV LN++ NA+K+
Sbjct: 248 KQKVQLYDILEETIWQLTPKSEEKQIQLVANLER--VELVGDRNRLKQVFLNIIHNAIKY 305

Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
           +   G +++     S     I + D G GIA+  +P +  SF Q    I S  +G G+GL
Sbjct: 306 SNEKGTIYIEAA-KSEGKAVIKVTDQGIGIAKEHLPFIEQSFYQ----INSHIEGAGIGL 360

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            I + ++  HGG   I S+ R G  ++  LP 
Sbjct: 361 AIVKKMVELHGGTLSITSRERVGTTILIKLPL 392


>gi|170016544|ref|YP_001727463.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
 gi|169803401|gb|ACA82019.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
          Length = 623

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 17/248 (6%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
           ++++ R  AE        F++++SHELRTPL ++  + + +    +   + E    ++G 
Sbjct: 368 ITEQQRIDAER-----RMFVSNVSHELRTPLTSVRSYVDALAEGAI--NDPEMAHNFLGV 420

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK------- 346
           +    Q ++ +IN++L+LSR++ G   +    I+L  +    +    +  +         
Sbjct: 421 VQNETQRMIRMINDLLELSRLDQGTMAVKLEVINLNSLFNFVLNRFDMIIENDAKNTETP 480

Query: 347 --NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404
             N  I ++       V  D     QV+ N+++NAVK++  GG +   +  T      +S
Sbjct: 481 NKNYSIQREFTSEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGVITARLIKTK-TRAILS 539

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I D G GI + ++  +   F +   +   A+ G GLGL I++ ++    G+  + S   +
Sbjct: 540 ISDQGLGIPKKDLNNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENQ 599

Query: 465 GVEVIAIL 472
           G      L
Sbjct: 600 GSTFYISL 607


>gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 626

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 156/375 (41%), Gaps = 22/375 (5%)

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
                   +   ++   +  TL+    P   +     ++  A  ++   +          
Sbjct: 269 PFSREVTAMTRIEMQANVIDTLIKNSGPVKVSGYLSWLFILAASILTTQVVLTMKPTRGL 328

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
            V  +     V L   A     +     A +L   L ++ +I Y L   N +      +K
Sbjct: 329 IVLGATLLGFVVLCAGAYWGFGLWLPMAAPLLTIFLCYYFFIPYRLIVENRRSWEY-YQK 387

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           + L++++E                   K+ F++ MSH+L+TP+  I G ++VI  +++  
Sbjct: 388 NKLLSQVE-----------------ELKTNFISMMSHDLKTPIARIQGMTDVILTDSVAL 430

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            N    +E +  I  S   LL  IN IL   +IE+   +L+  +  + ++++E I   + 
Sbjct: 431 SN--QQREAVDTIKHSSDDLLKFINAILSYGKIESQGVQLNMQSKDINNLLQEVIRKHEF 488

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A+ K I+I  +++P    V  D + M+QV  NL+ NA+K++    ++ V+   T  +  
Sbjct: 489 LARVKRIQIVSELEPMFP-VQVDPELMKQVFSNLVENAIKYSPEDTKIMVSSEETPSK-V 546

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D GPGI + E+  +   F +      S  +G GLGL +A+     H G   + S 
Sbjct: 547 IVQVADQGPGIPQDELQNIFMKFFRSKNVKSSPIKGSGLGLYLAKYFTELHHGNIFVESS 606

Query: 462 LREGVEVIAILPNTR 476
              G      LP  +
Sbjct: 607 HGNGSTFTVELPIEQ 621


>gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1194

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 11/277 (3%)

Query: 218  QAEKDDLIAELEVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
            QA+ D  +     A    D  R     ++ +  K  FLA ++HELR PL  I    +++ 
Sbjct: 791  QADLDVAVDLAHRAAVAIDNARLYSDLKDADRRKDEFLAMLAHELRNPLAPIRSGLDLLR 850

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +        E   E +  ++   QHL+ L++++LD+SRI  G+ EL +  + L +++   
Sbjct: 851  IG-------EQRPEVLELMNNQLQHLVRLVDDLLDVSRILRGKVELRKEQVELRELITRT 903

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +  +  +   +N E+  ++  +   +  D   + QVI NLLSNA K+T   G+V +++  
Sbjct: 904  VDAVNDQFTSRNQELTVRLPDAACWLNGDSVRLSQVIHNLLSNASKYTPPDGKVSISLER 963

Query: 396  TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            T  R   IS++D+G GI    +P V   F Q   +I  ++ G+G+GL + +S++  HGG 
Sbjct: 964  TE-RFLRISVRDSGIGIDSKLLPHVFELFTQAERSIDRSQGGLGIGLTVVKSLIELHGGT 1022

Query: 456  FLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQY 491
               RSK   +G E    LP       +  D   S+  
Sbjct: 1023 VSARSKGKGKGSEFRIRLPVRGNQQQVETDEQPSSPI 1059


>gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22]
 gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22]
          Length = 541

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 294 ITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 349

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 350 EEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 409

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +++I      +   +  D   + QVI+N  +NA+KFT+  G + +      +    Y 
Sbjct: 410 SPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSK-GSIEMGYRIEEASDEIYF 468

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG     SK  
Sbjct: 469 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGAESKEG 524

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P T  + 
Sbjct: 525 EGSCFWFKIPRTENIE 540


>gi|256018746|ref|ZP_05432611.1| hybrid sensory histidine kinase TorS [Shigella sp. D9]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|284053861|ref|ZP_06384071.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570304|dbj|BAI92576.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 368

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 127/297 (42%), Gaps = 17/297 (5%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
            S+      A+    ++T  + +   ++     +         ++ S   E  + A   N
Sbjct: 72  WSVLAGTTAAVCLSYWVTKRITQPLTEMEEITHKFAKGNLSERMSSSEIHELNQLAMSFN 131

Query: 247 LA----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
                       +   ++ ++HELRTP+  + G+ E +    + P  +   +     + +
Sbjct: 132 QMASSLQDVEQKRRELISDLTHELRTPITVVRGYLEEMAEGRISPSPDIYQQ-----LTK 186

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
             + L  LIN + +LS++E+G   ++   ++L  ++   +     +  E+   +      
Sbjct: 187 ETKRLERLINNLQELSKVESGYLPINPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSE 246

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
            L    AD     Q+++NLL NA+++T   G + + V +T G   ++ + D G GI+E +
Sbjct: 247 ELPLALADVDRTEQILVNLLGNAIRYT-KHGLIKIEV-YTHGGYLFVDVSDTGIGISEAD 304

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +P V   F +   +      G G+GL I + ++   GG+  + S+L +G      LP
Sbjct: 305 LPHVFERFWRADRSRSRNYGGTGIGLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 361


>gi|269839880|ref|YP_003324573.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791610|gb|ACZ43750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 593

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 6/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP+ A+    E +E   +   + E  ++++  +H     
Sbjct: 360 ELRRAETIRQEFVANVSHELRTPVAALKSLVETLEEGAL--EDEEVARDFLARMHVEVDK 417

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  LI E+L+LSRIE+G+ EL    ++L+++VR     L+ +A+ + +++   ++     
Sbjct: 418 LAQLIEELLELSRIESGKVELRIHPVNLVEVVRAGAERLRPQAERQGVDLEVTVEQPEIL 477

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
             AD + ++QV++NL+ NA+KFT  GGR+ V V ++  R   ++++D G GI    +  +
Sbjct: 478 ALADPERIQQVVINLVHNAIKFTPPGGRITVRV-YSLDREVAVTVQDTGVGIEPELLDRL 536

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
              F +       +  G GLGL IA+ ++  H G+    S+ + +G      LP 
Sbjct: 537 FERFFKVD--RARSAGGTGLGLAIAKHLVLAHRGRIWAESEGMGKGARFTFTLPA 589


>gi|240146930|ref|ZP_04745531.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257200913|gb|EEU99197.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 478

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 131/332 (39%), Gaps = 16/332 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +S     +  L    + +F  + +A      +   ++ I +  +                
Sbjct: 161 VSSIVNLSNQLTNLSYQTFALLFLAAFVVLALFTWIVYIPIRKIAQG--------ANEYA 212

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
             N +        D++         +++E     E  +  K  F++++SH+ R+PL +I 
Sbjct: 213 SGNFEAKIDVHSNDEIGYLAASLNYMANELNTLEE--DQRK--FVSNVSHDFRSPLTSIK 268

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+ E +     G +  E   +Y+  I    + L  L   +L+L++  +    L  ++  +
Sbjct: 269 GYVEAMLD---GTIPVEMQDKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDITSFDI 325

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +R  +   +    EK+I     +      V AD   ++QV+ NL+ NA+KF+     
Sbjct: 326 NHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYNLIDNALKFSHANSS 385

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + +          ++S+KD G GI +  I  +   F +  ++    ++G GLGL I + I
Sbjct: 386 ITIETT-EKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDKKGTGLGLSIVKEI 444

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
           +  HG      S    G E I  LP  +    
Sbjct: 445 IQAHGENINCISTEGVGTEFIFTLPLAKEQEE 476


>gi|162450925|ref|YP_001613292.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
 gi|161161507|emb|CAN92812.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
          Length = 1051

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 113/255 (44%), Gaps = 6/255 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + E    +    + R      +  K+ F+A++SHE RTPL  ILG  E         L
Sbjct: 175 RDVTEQRRLEREVAQHRDELATLDRLKTEFVANVSHEFRTPLTLILGRVEDALSSPARSL 234

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             +     +   HRS   LL L+N +LD SRIEAGR + S +   L  +  E     +  
Sbjct: 235 AGDG----LAAAHRSTLRLLRLVNTLLDFSRIEAGRLQTSFAPTDLARLTAELASSFRSL 290

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            +   + +     P    V+ D     +V++NLLSNA KFT   G + V++         
Sbjct: 291 IEGAGLSLVVDCPPLPEPVYVDAAQWEKVVMNLLSNAFKFTFE-GEIAVSLRAHPDH-VE 348

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D G GI   E+P +   F +   A   + +G G+GL + Q ++  HGG     S +
Sbjct: 349 LTVRDTGTGIPSEELPRIFERFHRVHGARGRSIEGTGIGLSLVQELVKAHGGSLRASSTV 408

Query: 463 REGVEVIAILPNTRV 477
            +G      +P  R 
Sbjct: 409 GQGSAFTVAIPRGRA 423



 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 22/292 (7%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAK 249
            +  T             ++++        +  L           D  R  + A+     +
Sbjct: 758  LFGTLTFMVVRSERRYSRADLAAAEELGRRCAL---------AVDNARLYRDAQSAIALR 808

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK----EYIGDIHRSGQHLLNLI 305
              FL+  SHEL+TPL  +    + +         +        + +G + R  + L  L+
Sbjct: 809  DEFLSIASHELKTPLTPLALQIQTLMRRAPELCPDSERLPWLMDRLGLVRRQSERLRRLV 868

Query: 306  NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL--RAQEKNIEIFQKIDPSLSSVWA 363
              +LD+SRI AGR  L    + L DIVR+ +   Q      E    +        +  W 
Sbjct: 869  ENLLDISRISAGRLALELEQVRLSDIVRQVVSRFQEGGEIAEAGSRVTVSAADDAAGSW- 927

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   + QV+ NL+SNA+K+   G  + +TV  + G    ++I D+G GIA+  I  +   
Sbjct: 928  DRVRLEQVVENLVSNALKY-GQGNPIEITVA-SMGSMATLTIADHGIGIAQEHIGRIFGR 985

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +   A      G+G+GL I   ++    G   + S L EG      LP  
Sbjct: 986  FERAVSA--RHYGGLGMGLYITTQVVEALDGSIEVSSVLGEGSTFKVTLPLA 1035


>gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 541

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E      +  E +++AEE N  KS FLA+MSHE+RTPLNAI+GFSE+           
Sbjct: 294 ITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEM----VCQTEEE 349

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  +E++  I  +   LL LI++ILDLS+IEAG  E + +   + +++      +Q +  
Sbjct: 350 EEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNS 409

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403
             +++I      +   +  D   + QVI+N  +NA+KFT+  G + +      +    Y 
Sbjct: 410 SPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSK-GSIEMGYRIEEASDEIYF 468

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD G GI   +I  V   F +      S  +G GLGL I + I+   GG     SK  
Sbjct: 469 YVKDTGIGIPADKIDKVFERFVKL----NSFIKGTGLGLAICRVIVERLGGVIGAESKEG 524

Query: 464 EGVEVIAILPNTRVLN 479
           EG      +P T  + 
Sbjct: 525 EGSCFWFKIPRTENIE 540


>gi|219847489|ref|YP_002461922.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541748|gb|ACL23486.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 527

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 9/241 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
              + AEE    + RF++S SHELR PL  I   +EV          +E  +E + D+  
Sbjct: 294 RALRPAEEAWTRQLRFISSASHELRAPLTLIRASAEVALRNA----KDEDQRELLTDVLS 349

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
              H+  L++++L LSR+++G   L    I+L D + +    +    +E+ I I      
Sbjct: 350 ESDHMRRLVDDLLTLSRLDSGSLTLQRQPITLNDFLADLHRHVSRLGEERGITITLAQAR 409

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
              +V AD   +RQ++L L+ NA+++T  GG + +     +G+   IS++D G GI    
Sbjct: 410 G--TVIADPDRLRQILLILIDNALRYTPTGGTITLNAEL-AGKQVRISVRDTGCGITPEH 466

Query: 417 IPTVLTSFGQGSIAIKSA--EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +P +   F +   A   +      GLGL IA+ ++  HGG   I S++ +G  V   +P 
Sbjct: 467 LPHLFERFYRADQARNRSSNTNNAGLGLSIAKGLVEAHGGTIGIESEVNKGTLVWFTIPT 526

Query: 475 T 475
            
Sbjct: 527 A 527


>gi|51594666|ref|YP_068857.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186893669|ref|YP_001870781.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|51587948|emb|CAH19551.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186696695|gb|ACC87324.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 939

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L           + +  L++ +     +    P+   ++
Sbjct: 271 LKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFIN 330

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +        
Sbjct: 331 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEMKVKERTLALAK 386

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 387 AK--RAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 440

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 441 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 500

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 501 ADIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 558

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 559 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 614

Query: 475 TRVLNFIP 482
             +   +P
Sbjct: 615 NAITPPMP 622


>gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus
          Length = 596

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 185/450 (41%), Gaps = 19/450 (4%)

Query: 25  LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84
               +    D+        +L  +   +     L   +       P+  +   + L    
Sbjct: 120 APVAAASTQDQPKRLAEGAALALIGACVAALTQLSG-LAPAAPTGPLAFVLGFLALVTTG 178

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
             L+ G  +        +       + +  +  GL    + +        +         
Sbjct: 179 LGLAAGLLIGRRRQGARDDRYASEIIGLETLLDGLPHLAIAV------RGQGQVTAVRGA 232

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
               ++ + L N  L  A        + A   QA             +    +       
Sbjct: 233 APPGVTRADLVNRGLTGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHR 292

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
               +    +     E+       E A+  + +    A     A  RFLA+MSHELRTPL
Sbjct: 293 VAPNQLVGVLRDITVERHR-----EHARPGAIDA--EALAAGRA--RFLANMSHELRTPL 343

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+GFS+++     GPL++  Y EY   IH SG HLL+LIN++LD+S+IEA R+EL   
Sbjct: 344 NAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRG 402

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
                + V+  + +L++++    +++   + P    V AD + ++Q++LNL+SNA+KFT 
Sbjct: 403 VFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTP 462

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V VT          I + D G GI+  ++  +   + Q   A + A +G GLGL +
Sbjct: 463 RGGQVTVTAHGY-DGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRA-RGTGLGLSL 520

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++     GG+ +I S+L  G  V   LP 
Sbjct: 521 VRAFAQLLGGEMVIESRLGAGTTVSVRLPV 550


>gi|121998422|ref|YP_001003209.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121589827|gb|ABM62407.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 633

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246
           +      A   ++F    Y   +         +++    AE+        + R+RAE+ +
Sbjct: 205 VVFEAYFAPVETWFEARAYPSDEGLAVYFRDISQRKQAEAEMAQLNEELHQARERAEQAS 264

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            AKS FLA+MSHELRTPLNAI GF++++      P   +   +++  I  +G HL +LI 
Sbjct: 265 RAKSEFLAAMSHELRTPLNAITGFAQLLHQTP--PDETQDRDQHLEQILSAGWHLRDLIG 322

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADE 365
           +++D ++IE G+  +    +++  + R  + M+  +A+ + + +  + DP +     AD 
Sbjct: 323 DVIDFAQIETGQLAVHAEPMAIDALARNSVAMITEQARRRGLTVHCQSDPIAPPWARADP 382

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
              RQV+LNLLSNAVK+    G + VT   T+G    + + D G GI  G    +   F 
Sbjct: 383 VRSRQVLLNLLSNAVKYNNPHGTITVTWS-TAGGSVQVDVADTGSGIPHGRRDRLFEPFE 441

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILPN 474
           +       + +G G+GL ++Q +     G    + S    G  +   LP 
Sbjct: 442 RLGR-EAGSIEGSGIGLSLSQRLARMMSGDLQLLHSSPDRGTTMRLTLPR 490


>gi|193070789|ref|ZP_03051723.1| TMAO reductase system sensor TorS [Escherichia coli E110019]
 gi|192955900|gb|EDV86369.1| TMAO reductase system sensor TorS [Escherichia coli E110019]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q +M   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLMDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|229115491|ref|ZP_04244897.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
 gi|228667904|gb|EEL23340.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
          Length = 444

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 25/307 (8%)

Query: 184 VLDISLAGMLATALSFFTY--ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----E 237
           +++I +  +    +       I+  L  S V+ +    +    IAE  +   + +    E
Sbjct: 147 IIEIIMFTIAVGIVISCIVFSISRRLANSFVEPIESIIQASSQIAEGTLKNKIKEDYPGE 206

Query: 238 TRKRA----------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             + A          E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  
Sbjct: 207 LGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVEHLTEEEI 264

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A++K 
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 324

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I+    I+     +  D   ++Q+ LN++ NA+K++   G V++      G+   I +KD
Sbjct: 325 IQFINTIER--IELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQ-AVIKVKD 381

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GIA+  +P +  SF Q +        G GLGL I + ++  H G   I SK   G  
Sbjct: 382 EGIGIAKEHLPYIEQSFYQINNHAA----GAGLGLAIVKKMVELHRGTLSIVSKEGIGTT 437

Query: 468 VIAILPN 474
           ++  LP 
Sbjct: 438 ILIKLPL 444


>gi|118477413|ref|YP_894564.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196047040|ref|ZP_03114259.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118416638|gb|ABK85057.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196022144|gb|EDX60832.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 357

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 142/351 (40%), Gaps = 16/351 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + +    
Sbjct: 13  LKVTGVIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILLWIFI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           F +   +   A  G GLGL I Q ++  H G+  + S+   G E I  +P 
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 353


>gi|194438003|ref|ZP_03070096.1| TMAO reductase system sensor TorS [Escherichia coli 101-1]
 gi|256023304|ref|ZP_05437169.1| hybrid sensory histidine kinase TorS [Escherichia sp. 4_1_40B]
 gi|301022622|ref|ZP_07186493.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1]
 gi|301646370|ref|ZP_07246255.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1]
 gi|307137626|ref|ZP_07496982.1| hybrid sensory histidine kinase TorS [Escherichia coli H736]
 gi|312971125|ref|ZP_07785304.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70]
 gi|194422939|gb|EDX38933.1| TMAO reductase system sensor TorS [Escherichia coli 101-1]
 gi|299881194|gb|EFI89405.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1]
 gi|301075406|gb|EFK90212.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1]
 gi|310336886|gb|EFQ02053.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70]
 gi|315135644|dbj|BAJ42803.1| hybrid sensory histidine kinase TorS [Escherichia coli DH1]
 gi|315619081|gb|EFU99662.1| TMAO reductase sytem sensor TorS [Escherichia coli 3431]
 gi|332342435|gb|AEE55769.1| TMAO reductase sytem sensor protein TorS [Escherichia coli UMNK88]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|320200221|gb|EFW74809.1| Sensor protein torS [Escherichia coli EC4100B]
          Length = 904

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|218283461|ref|ZP_03489461.1| hypothetical protein EUBIFOR_02051 [Eubacterium biforme DSM 3989]
 gi|218215843|gb|EEC89381.1| hypothetical protein EUBIFOR_02051 [Eubacterium biforme DSM 3989]
          Length = 464

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 124/264 (46%), Gaps = 10/264 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAK---SRFLASMSHELRTPLNAILGFSEVIELETM 279
           +L        ++S E +K  E     K     F ++ SHEL+TPL +I G++E+I   T+
Sbjct: 207 ELYKITNALTNMSKENKKYLERLEKEKKVRQEFFSNASHELKTPLTSIRGYTELIRSHTI 266

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              ++      +  + +   H+  LIN+IL +S++E    +++ S I    ++   +  L
Sbjct: 267 --QDSNQIDTCLDCVLKESDHMTQLINDILTISKLETEEMQVTYSHIHAKKLLDSVVETL 324

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           + + ++ +++++        +V+A    ++ +  NL+SNA+K+  + GR+ + +      
Sbjct: 325 RPQIKKMDLKVYVNATE--FTVFASMDHIKGIFYNLISNAIKYNKVNGRIDIVLKKNQKN 382

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y S++D G GI   +   +   F +          G GLGL I + ++  + G   + 
Sbjct: 383 M-YFSVEDTGIGIPNKDQDRIFQRFYRVDKQRSKTIPGTGLGLSIVKHVVYYYKGDIHLT 441

Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483
           SK   G ++   LP   ++   PE
Sbjct: 442 SKEDIGTKITVELPI--IVKEAPE 463


>gi|158425990|ref|YP_001527282.1| putative sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158332879|dbj|BAF90364.1| putative sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 816

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 182/474 (38%), Gaps = 38/474 (8%)

Query: 24  GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW---FTQNPIFPMWS---L 77
             E   +  +++  +     S       +    L   +           P   ++     
Sbjct: 21  FTEQGLEAAYEQASLGA---SRATAFVAIFGTTLASLSFLPLDLQLIGPPDLYLFVGIRC 77

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           + L +      + ++       I   YV +I         G+ +    L   G       
Sbjct: 78  VILVLGVCAFLVVRREDTLRGIIIATYVQQILF---YFLNGIIFDHPALTRHGG------ 128

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
                   ++AL++  L    +  A  +  +  +++L     + +     +   ++   +
Sbjct: 129 ----LLLPIMALALPMLLPGRIWLAALVGAYGPLISLLFWGALKVPPESPADLSVILLVV 184

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                +     +    +   Q      I           E ++ AE    AKS+FLA MS
Sbjct: 185 GVALGVGIAARRQLNGMRRAQFLH---IERERQVNVELLEAKEAAEAGARAKSQFLAVMS 241

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N ILG   ++    +        +E +  + R+ + L   ++++LDLS +E G
Sbjct: 242 HEIRTPMNGILGMVRLVLDGPL----EAAQRERLRVVLRAAEALQVTLDDVLDLSELEQG 297

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLL 376
              L  + + L  ++R+ + +++ RA EK + +   + P     V  D   +RQ++LNLL
Sbjct: 298 A-RLELAPLELSRVLRDAVDLMRPRADEKGLALEVVLAPDVPPCVHGDAARLRQILLNLL 356

Query: 377 SNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            NA+KFT + G V +TV  TS        G   ++ D G GI   E   +   F Q   +
Sbjct: 357 GNAIKFTEV-GHVRLTVSRTSRPESAGRMGLRFTVADTGIGIHPQERAGLFHEFVQADAS 415

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484
           I+    G GLGL I + ++   GG+  + S    G      +P       +PE+
Sbjct: 416 IRRRFGGSGLGLAICKRLVEAMGGEIEVESTPGVGSCFTFEVPMDVASAPVPEE 469


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 9/355 (2%)

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W  +  +           +     LL A S+  L  F    +  ++     +  + + + 
Sbjct: 349 WAFIAEISTSEAYRPIRQLETLVNLLGAGSLLLLILFSRWLSHSITAPLRSLTAAAEQVA 408

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
              +            +        H+ +S    +      +    EL+    L+ +   
Sbjct: 409 DGALDHPITIPRTDDDIDRLAQAFRHMQRSVKDKIEL---IERQTQELQQQVKLTHKQNL 465

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             ++ +  K   LA+ SHELRTP++ I G +E +          E  +  +G I +S   
Sbjct: 466 SLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQD--LTEGQQNQLGLIIKSADG 523

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L++++LD  ++  G+ E+    ++   ++R  + + Q   Q K + +       L  
Sbjct: 524 LARLVDDLLDYHQMRYGQLEIHPQPVASKGVIRLVLDLCQHLVQAKPLTLVDISPAELPP 583

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V ADE+ + QVI NL+ NA+K+T   G+V ++     G    I + D G GIA+  +  +
Sbjct: 584 VLADEQRLEQVIYNLVGNAIKYTPQ-GKVVLSA-LVEGNFLRIRVTDTGIGIAKDHLEHI 641

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
                Q S  +   +QG GLGL I + ++   GG+  + S+   G      LP  
Sbjct: 642 FEPLVQMSPEVS--KQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLPLA 694


>gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina
           98AG31]
          Length = 1004

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 159/441 (36%), Gaps = 32/441 (7%)

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV--GQIAIGLC 120
           G          +W      ++          M +        +W    +     + + + 
Sbjct: 292 GASVVHGLKALIWGSAIALMHHIG-------MKAMNIPEGRVIWNPVYIALSCSLVLVVS 344

Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180
           W     ++   +      ++ + T L A     +S     Y       P +    +    
Sbjct: 345 WLGCITIDQMDFHLSRQLLFATLTSLGAFGFHYVSALGATYLTAAP--PDLKTPISGFRD 402

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
            +      LA             T  L ++ +  L     +   +             + 
Sbjct: 403 EIPFFITGLAVCTCLLSIGLLAHTASLSRNRLAELIFTKRRLWKVKAQ----------KL 452

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE     K  F++  SHELRTPL ++ G+++++    +    N+  K Y+ ++ ++  +
Sbjct: 453 AAEGAADLKQNFISVASHELRTPLFSVTGYADLLGRTDL----NDEQKLYLANMQQACAN 508

Query: 301 LLNLINEILDLSRIEAGRYELSESAI--SLIDIVRECIIMLQLR---AQEKNIEIFQKID 355
           +  +I  +LD S++E    E +   +  +L  +V     M + +    + +++++   + 
Sbjct: 509 MQLIIANVLDFSKLERNNEESNAKPVCMNLRAMVEGIGRMTEDKGRSVRARSVDLIVHVS 568

Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +      DE  + ++ +NLLSNA+KFT   G + +++         I ++D G GI  
Sbjct: 569 AIVPETALVDETFVLRICMNLLSNALKFTEK-GFILISLDMNEPEELVIKVQDTGIGIPR 627

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   + Q   +     QG GLGL I + ++    G+  + S   EG   +  LP 
Sbjct: 628 SFRKDLFEPYRQADSSTTRPHQGTGLGLSICKQLVQRLDGKIEVDSIEGEGTTFVVTLPL 687

Query: 475 TRVLNFIPEDNHESTQYKCYA 495
            R  +       E  +  C A
Sbjct: 688 GRPSSPPLRSPTELGKRICVA 708


>gi|225386428|ref|ZP_03756192.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
 gi|225047467|gb|EEG57713.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
          Length = 468

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 12/306 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELE 229
            L   + +   +  I L     T       IT    +     L  +      D++     
Sbjct: 169 ILYITSFLIFVLSSIILLVFTKTVYLPLRKITVGANEYAAGNLDYRIAVHTHDEMGYLAN 228

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               +SDE  K  E     +  F+A++SH+ R+PL +I G+ E I     G +  E Y +
Sbjct: 229 TLNYMSDELNKMEE----YQKNFIANVSHDFRSPLTSIKGYLEAILD---GTIPPEMYGK 281

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  +    + L  L   +L L+ ++   Y LS S   +  ++++     +     KNI 
Sbjct: 282 YLSRVISETERLHKLTESMLTLNSLDNRGY-LSRSNFDINRVIKDTAASFEGTCDNKNIV 340

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                  ++  V+AD   ++QV+ NL+ NA+KF+     +++       +  +IS+KD G
Sbjct: 341 FDLTFSDNIQMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASSRYEK-IFISVKDTG 399

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +  +  +   F +  ++    ++G GLGL I + I+  HG    + S    G E I
Sbjct: 400 IGIPKDSLKKIWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFI 459

Query: 470 AILPNT 475
             LP +
Sbjct: 460 FSLPRS 465


>gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 581

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
                   +  F+A++SHELRTP++++   +E ++              +I  IH     
Sbjct: 352 ELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGAASDAAVAAG--FIEKIHLEVDK 409

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+ E+ DLS IE+G+  L+     +   ++     L  +A+   I +  ++  +L  
Sbjct: 410 LAQLVTELSDLSAIESGQAVLNLQPGDISTAIKLAAARLSPQAERAGISLGVELPETLPQ 469

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  DE  + QV++NL+ NA+KFT  GGR+ +    T G+   + + D+G GI E ++  V
Sbjct: 470 VKLDENRIEQVLVNLVHNAIKFTPKGGRIKIGA-RTQGQILVVYVSDSGIGIPEDDLTRV 528

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I++ I+  HGG     S+  +G      LP 
Sbjct: 529 FERFYKVDKARSG--GGTGLGLAISKHIVQAHGGNIWAESRYGKGATFSFSLPL 580


>gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 768

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 132/323 (40%), Gaps = 7/323 (2%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            L          L+     +  +   +  + V           +         +    ++
Sbjct: 300 TLVAMRWLRRNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARNCVALSL 359

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +    A++   +      +   D  R RA+  N  K   LA++SHELRTPLN I G+ E
Sbjct: 360 TLRETGAQRRRDLRTQRSLQGARD-ARDRADTSNRLKDELLATVSHELRTPLNVIYGWIE 418

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           V+       L     ++ I  I RS + L  ++ +ILD S +  G+  +    + ++ + 
Sbjct: 419 VLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLF 474

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            + +   Q  A    I +  +   S   V  D + +RQ++ NL+SNA+KFT  GG V VT
Sbjct: 475 SDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVT 534

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +         + + D G GI    IP V   F +   +  S  +G+GLGL I + I   H
Sbjct: 535 LSRDDAHAVLV-VADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLH 593

Query: 453 GGQFLIRSK-LREGVEVIAILPN 474
           GGQ  + S     G      LP 
Sbjct: 594 GGQVRVESAGRNRGATFTVTLPA 616


>gi|323947218|gb|EGB43226.1| TMAO reductase sytem sensor TorS [Escherichia coli H120]
          Length = 914

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|317500011|ref|ZP_07958246.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898496|gb|EFV20532.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 470

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D  AE        ++   R ++ + ++  F++++SHEL+TP+ ++   ++ +  +    L
Sbjct: 212 DTFAETSQLSEAFNKMLGRLKQLDDSREEFVSNVSHELKTPMTSMKVLADSLLEQE--NL 269

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E Y+E++ DI +       +I ++L L ++      ++   +++ D++ + +  L+  
Sbjct: 270 PVEMYREFMEDIAKEIDRENQIITDLLSLVKMNRTGQTMNIQQVNINDLLEQILKRLKPI 329

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++KN+E+  +      S   DE      + NL+ NA+K+    G VHV++     +  Y
Sbjct: 330 AEKKNVEMVME-SFRPVSAEIDETKFTLAVSNLVENAIKYNHENGWVHVSLNA-DHKYFY 387

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D+G GI + +   +   F +   +      G GLGL IA++ +  H G   + S  
Sbjct: 388 LKVEDSGLGIPQEDQAHIFERFYRVDKSHSREIGGTGLGLAIARNAVIVHRGSIKVHSNE 447

Query: 463 REGVEVIAILPNTRVLNFIPE 483
            EG      +P   +   +PE
Sbjct: 448 GEGTTFTVRIPL--IYTTVPE 466


>gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1346

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 30/329 (9%)

Query: 169  PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
            P  V ++        V    +  + A  +  +                  A K  L  E 
Sbjct: 762  PTTVLITVSPPWWRTVYAYIIYLLSAAGVLLYLRYRG-----------IMAIKTKLAIEE 810

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            E  ++      +R  E ++ K  FL ++SHE RTP++ I+   E +     G   ++   
Sbjct: 811  EKRET------QRMRELDVMKINFLTNLSHEFRTPISLIMAPLEKLAALPTGDHISKE-- 862

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
              +  I R+ + LLNL+N++LD  ++E     L+ S   LI  +R+     +  ++ K I
Sbjct: 863  --VSVIKRNTRRLLNLVNQLLDFRKMEHQELRLNLSGGDLIGFIRDAADSFRDISERKKI 920

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405
                + +        D   + +++ NLLSNA KFT+ GG + V +            I++
Sbjct: 921  RFEFQTEIESLQARFDSDKVERIVFNLLSNAFKFTSAGGFIKVKLSLILEAEVSSLQITV 980

Query: 406  KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
             D+G GI E +   +   F Q         QG G+GL I +  +  HGG+  + SK  +G
Sbjct: 981  SDSGIGIPESDQARIFEKFFQHDTPDIILNQGSGIGLSIVKEFIELHGGEVTVMSKPGQG 1040

Query: 466  VEVIAILPN------TRVLNFIPEDNHES 488
                 +LP         V+  IP    E+
Sbjct: 1041 TTFNVVLPVIALDENKVVVTPIPHQYQEA 1069


>gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1120

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 6/252 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +A+ +  +    E+R RA+ E+  K  FLA+MSHE+RTPL+  LG  E++    +     
Sbjct: 512 LAKRKEIERRLRESRARAQAESHEKGMFLATMSHEIRTPLHGALGNLELLSRMGL----T 567

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  +  +     S   LL+LIN +LDLSRIEAG + L E    +  +V +        AQ
Sbjct: 568 QEQRSRLLIAQDSFGSLLSLINGVLDLSRIEAGEFLLQEQPQHIDQLVEQASRTFAADAQ 627

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  + +   IDP+L  +   D     Q++ NL+ NAVKFT   G + V++G T      +
Sbjct: 628 KNGVRLLCLIDPALRGTWICDGYRFTQIVTNLIGNAVKFT-SHGAITVSLGSTEIGQVRL 686

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D+G GI E EI  +   + QGS   KS+  G GLGL + Q I    GG     S++ 
Sbjct: 687 RVADSGRGIPEDEIEKIFMPYVQGSAGPKSSRAGTGLGLSLCQKIAERMGGSITAESEVG 746

Query: 464 EGVEVIAILPNT 475
            G     +LP  
Sbjct: 747 VGSIFTVVLPLR 758


>gi|153814219|ref|ZP_01966887.1| hypothetical protein RUMTOR_00428 [Ruminococcus torques ATCC 27756]
 gi|331087759|ref|ZP_08336685.1| hypothetical protein HMPREF1025_00268 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848615|gb|EDK25533.1| hypothetical protein RUMTOR_00428 [Ruminococcus torques ATCC 27756]
 gi|330409740|gb|EGG89176.1| hypothetical protein HMPREF1025_00268 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 497

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D  AE        ++   R ++ + ++  F++++SHEL+TP+ ++   ++ +  +    L
Sbjct: 239 DTFAETSQLSEAFNKMLGRLKQLDDSREEFVSNVSHELKTPMTSMKVLADSLLEQE--NL 296

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E Y+E++ DI +       +I ++L L ++      ++   +++ D++ + +  L+  
Sbjct: 297 PVEMYREFMEDIAKEIDRENQIITDLLSLVKMNRTGQTMNIQQVNINDLLEQILKRLKPI 356

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A++KN+E+  +      S   DE      + NL+ NA+K+    G VHV++     +  Y
Sbjct: 357 AEKKNVEMVME-SFRPVSAEIDETKFTLAVSNLVENAIKYNHENGWVHVSLNA-DHKYFY 414

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           + ++D+G GI + +   +   F +   +      G GLGL IA++ +  H G   + S  
Sbjct: 415 LKVEDSGLGIPQEDQAHIFERFYRVDKSHSREIGGTGLGLAIARNAVIVHRGSIKVHSNE 474

Query: 463 REGVEVIAILPNTRVLNFIPE 483
            EG      +P   +   +PE
Sbjct: 475 GEGTTFTVRIPL--IYTTVPE 493


>gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 802

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|300929237|ref|ZP_07144716.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1]
 gi|300462803|gb|EFK26296.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1]
          Length = 904

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1110

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 78  ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137
           I  A    + +  +     D        +R       + + L                  
Sbjct: 300 IAAARQLIDETARRSQAAQDSLRDSERRFRRLFQEAPLPLALV--SRDARVTDINRRFVQ 357

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI-SLAGMLATA 196
               +   +  L+      +               A    A     +            +
Sbjct: 358 LFGYTLAEIPTLAHWWQLAYPDATYRAAVIARWNAARVAVAQTRGDIAPQEYHVTCRDGS 417

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------ 244
           +              +       E       +    +  +  R+ A+             
Sbjct: 418 VRTLLIAGIDQDDGFMATFFDITEIRRAEQHVRALNADLE--RRVADRTGELLQAREAAE 475

Query: 245 -ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKS FLA+MSHE+RTP+NAI+G + ++  +   P+  +     +G +  +  HLL 
Sbjct: 476 AANRAKSAFLANMSHEIRTPMNAIVGLAHLLRRDAHEPVAAQR----LGQMIDAAGHLLQ 531

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           +IN+ILDLS+IEAG+ +L +   SL  ++     ++  RA+ K + +  ++D    ++  
Sbjct: 532 VINDILDLSKIEAGKLQLEQLPFSLQALLARNCALVADRARAKGLAVAIEVDGVPDALSG 591

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIP 418
           D   + Q +LNLL NAVKFT   G + +     +            ++D G GIA  ++ 
Sbjct: 592 DPTRLSQALLNLLGNAVKFTEQ-GSIVLRAECVARGTDDHLTVRFRVRDTGIGIAPDKLD 650

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
            +   F Q   +      G GLGL I Q + A  GG+  +RS+   G E    
Sbjct: 651 QLFAPFMQADASTTRRFGGTGLGLAITQRLAATMGGEVGVRSEPGRGSEFWFT 703


>gi|16077444|ref|NP_388258.1| two-component sensor histidine kinase YclJ [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221317449|ref|ZP_03598743.1| hypothetical protein BsubsJ_02128 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321711|ref|ZP_03603005.1| hypothetical protein BsubsS_02139 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396953|sp|P94414|YCLK_BACSU RecName: Full=Sensor histidine kinase yclK
 gi|1805446|dbj|BAA09008.1| yclK [Bacillus subtilis]
 gi|2632677|emb|CAB12184.1| two-component sensor histidine kinase [YclJ] [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 473

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 15/338 (4%)

Query: 140 YKSATLLIALSISA--LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
           +K A LLI+       + N +  Y  +     +V+ +    ++S   +        AT  
Sbjct: 143 FKGAVLLISPISGVEQMVNQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDK 202

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   HL  S         E   L ++  +      ++R   E     + +F+A +S
Sbjct: 203 VASGDYDIHLENS------YGDEIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVS 256

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL  I G  E +       +  +   +    I    + +L L+ E LD  +I + 
Sbjct: 257 HELKTPLTTINGLVEGLNSH---TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQ 313

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  L++  + LI++       LQ +A+EK  ++  +++     V AD     Q+++N+  
Sbjct: 314 QITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQVE-DHVIVHADYDRFIQILVNITK 372

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQ 436
           N+++FT   G + +  G    +   I I+D G GI + +I  +   F +  I+   +A  
Sbjct: 373 NSIQFT-QNGDIWLR-GMEGYKETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYG 430

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             GLGL I + ++  H G   I+S+  +G + I  LP 
Sbjct: 431 EYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLPL 468


>gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2]
          Length = 1109

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 22/267 (8%)

Query: 238 TRKRAEEENLAK-------------SRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            R+  EE    K             + FLA+MSHE+RTP+NAI+GFS+++  E M P   
Sbjct: 513 ARREMEE--ELKAAKERAEQAAAARTNFLANMSHEIRTPMNAIIGFSDLMLAEKMSP--- 567

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                ++  ++RS + LL+L+N+ILD ++++ G+ +L      + + V   I    L A+
Sbjct: 568 -EQHGHLTTVNRSARSLLHLLNDILDSAKLDKGKLDLDYRDFIIREEVDTVISTFWLEAK 626

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K I +  ++   +  +     + +RQV+ NL+ NAVKFT   G V + V  +     Y 
Sbjct: 627 SKRISLEVQVGSEVREAYNGVPERIRQVLNNLIGNAVKFTGD-GSVVLEVS-SDSSFVYF 684

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            +KD+G G+   ++  V  +F Q   ++     G GLG  I++ ++   GG    +S+L 
Sbjct: 685 KVKDSGIGMNSEQVNRVFDAFAQADASMSRKYGGTGLGTTISKQLVELMGGNICAQSELG 744

Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490
            G      LP       +  +  +  Q
Sbjct: 745 VGSTFTFRLPLVPAKAPMAMEEGKPVQ 771


>gi|326389589|ref|ZP_08211155.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994304|gb|EGD52730.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 466

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  + RF++  SHEL+TPL ++    E +        +   YKE + D+      +  
Sbjct: 237 QIDEERKRFVSDASHELKTPLASVKALVESLIDSR--NEDVHFYKEILRDVDSEIDRMTR 294

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++L+L+R++  +  +      + +I+ + I  L   A+ K I +  +   ++     
Sbjct: 295 LVNDLLELARMDKIK-SVRVKKCEISEIILDVIESLAPLAKAKEINLAFQGKSNV-FAEV 352

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     +++ N++ N +K+T  GG V V +        Y++I DNG GI+E  +P +   
Sbjct: 353 DADRFYRMVYNIVENGIKYTYNGGNVIVGLE-EDENNIYLTIADNGIGISEETLPKIFDR 411

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +G  A      G GLGL IA+ I+  H G+  + SK+ EG      LP  +
Sbjct: 412 FTRGDTARSKKSGGFGLGLAIAKEIIDIHEGKVTVESKVGEGTVFKISLPKKK 464


>gi|307265494|ref|ZP_07547049.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919448|gb|EFN49667.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 466

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + +  + RF++  SHEL+TPL ++    E +        +   YKE + D+      +  
Sbjct: 237 QIDEERKRFVSDASHELKTPLASVKALVESLIDSR--NEDVHFYKEILRDVDSEIDRMTR 294

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++L+L+R++  +  +      + +I+ + I  L   A+ K I +  +   ++     
Sbjct: 295 LVNDLLELARMDKIK-SVRVKKCEISEIILDVIESLAPLAKAKEINLAFQGKSNV-FAEV 352

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D     +++ N++ N +K+T  GG V V +        Y++I DNG GI+E  +P +   
Sbjct: 353 DADRFYRMVYNIVENGIKYTYNGGNVIVGLE-EDENNIYLTIADNGIGISEETLPKIFDR 411

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           F +G  A      G GLGL IA+ I+  H G+  + SK+ EG      LP  +
Sbjct: 412 FTRGDTARSKKSGGFGLGLAIAKEIIDIHEGKVTVESKVGEGTVFKISLPKKK 464


>gi|239503589|ref|ZP_04662899.1| Signal transduction histidine kinase [Acinetobacter baumannii
           AB900]
          Length = 1157

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 610 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 669

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 670 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 726

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 727 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 786

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 787 YEIGDNLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 844

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 845 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLVDLLGGQLSVTSQLN 897

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 898 QGSQFKIKFYLPSKEVVHPI 917


>gi|296121745|ref|YP_003629523.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014085|gb|ADG67324.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 584

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R E        F++++SHEL+TPL +I  ++E +    M   + ET + ++  I    +
Sbjct: 346 RRLENLRR---EFVSNVSHELKTPLTSISAYAETLLNGAM--EDEETCRTFLQRIEEQAE 400

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI +++ L+R+++         ++   I+++ I   Q  A+ K IE+         
Sbjct: 401 RLNKLIADLIALARLDSIEQAFELEPVNATYILQKSIDEHQGVAKSKQIELISVAPNDEM 460

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V AD  G + +I NLL NA+ +T  GG+V V      G    I ++D G GI       
Sbjct: 461 EVIADSDGFQTIIDNLLDNALNYTPAGGQVTVRWRR-DGEWSRIDVEDTGVGIPREHQAR 519

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   A      G GLGL I + +    GG   + S++  G +   +L
Sbjct: 520 IFERFYRVDKARSREVGGTGLGLSIVKHLCQVFGGSIRVTSQVGSGSQFTVLL 572


>gi|123475708|ref|XP_001321030.1| ATPase [Trichomonas vaginalis G3]
 gi|121903848|gb|EAY08807.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1419

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 7/255 (2%)

Query: 225  IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            + EL  A +  +  R RAEE N  K+ FLA+MSHE+RTP+N I G  +V+ L+ +     
Sbjct: 920  VTELRNAYNRLETERARAEEANKQKTLFLANMSHEIRTPMNGIFGMLDVLSLQELTS--- 976

Query: 285  ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
               +  +  I  S   L+ L+++ L LS+IE G  E+  S + +  ++   I+     A+
Sbjct: 977  -EQRLLVDSIRSSSFQLMKLLDDTLHLSKIEQGETEVEMSNVDIWQLISPTILANYASAK 1035

Query: 345  EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            E N+++   +     S V +D + + +++ NLLSNA+KFT   GR+ V + +       +
Sbjct: 1036 ENNVKLSLYVKTPFPSLVRSDPQLILKILNNLLSNAIKFTKQ-GRIDVKLSF-DDEVFTL 1093

Query: 404  SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            S+ D G GI++ +   +   F Q    +     G GLGL + Q I    GG   + S++ 
Sbjct: 1094 SVADTGIGISKDQRAVIFERFAQADDCVARFFGGTGLGLSLVQEISKFLGGDVTLESEVG 1153

Query: 464  EGVEVIAILPNTRVL 478
             G      +P   V+
Sbjct: 1154 CGSTFTVTIPMESVM 1168


>gi|75907244|ref|YP_321540.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700969|gb|ABA20645.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1109

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 377 EQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NER 435

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--- 343
              Y G IH+SG+HL++++N+ILDL+R+E G+ EL+   +S+  +    +   +      
Sbjct: 436 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQT 495

Query: 344 ---------QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                    ++   E    I+  L  + ADE  +RQ++++LLSNA KFT I G + + V 
Sbjct: 496 SKGSTTEATRQSTPEFTLSIELDLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVS 555

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    ++ D G GI E +   +   F Q    +    +G GLGL + +++   HGG
Sbjct: 556 HWE-GWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGG 614

Query: 455 QFLIRSKLREGVEVI 469
                S+  +G +  
Sbjct: 615 DVSFLSREGKGSQFT 629


>gi|332286632|ref|YP_004418543.1| PhoR [Pusillimonas sp. T7-7]
 gi|330430585|gb|AEC21919.1| PhoR [Pusillimonas sp. T7-7]
          Length = 431

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 157/430 (36%), Gaps = 10/430 (2%)

Query: 55  FVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ 114
            +  V +IG W         W  + +      L L   ++ S  ++  +  W   +    
Sbjct: 1   MIKTVISIGLWAVFGWACGTWLSVHVGWGVFTLGLVSMILVSGWQLMLMERWTADIEASP 60

Query: 115 IAIGLCW----TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170
            A    W     ++                   ++++A          L  ++ L +   
Sbjct: 61  PASVGPWDNVLAVVYRKLRKDKHEIESLNRHVDSIMMAAEALPDGAITLDESMLLIWSNK 120

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE- 229
             +      + +         + A   + +   T       + + +   EK  L+     
Sbjct: 121 TASEHLGLDLQVDRNHSIFNILRAPEFARYARQTSWPTPLLLHLNADGHEKALLVQLTRY 180

Query: 230 VAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                   TR   + E+    +  F+A++SHELRTPL  + GF E +       L++E  
Sbjct: 181 GLGQFLVVTRDVTQVEKLETTRKDFVANVSHELRTPLTVLSGFLETLHDMPDESLSDEQR 240

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           + Y+  +    Q +  ++ ++L LS +E+    +    + L  I+   +   Q R    +
Sbjct: 241 QRYLAMMLEQAQRMQAIVEDLLTLSTLES-SPSIEGEPVRLGAIIHTALQ--QGRVLSND 297

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
             +F +       V   E  +   + NLL+NA+++T   G + V+   T       S++D
Sbjct: 298 QHVFMENVDEELCVNGIETELASAVSNLLTNAIRYTPKDGTITVSWYVTDQGHACYSVQD 357

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GIA  +IP +   F +       A  G GLGL I + +   H  +  I S+   G  
Sbjct: 358 TGIGIAAQDIPRLTERFYRVDRGRSRATGGTGLGLAITKHVAMRHNAELSIHSRFGAGSL 417

Query: 468 VIAILPNTRV 477
              I P +R+
Sbjct: 418 FSVIFPASRI 427


>gi|218553582|ref|YP_002386495.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI1]
 gi|218360350|emb|CAQ97900.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli IAI1]
          Length = 914

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|221197447|ref|ZP_03570494.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
 gi|221204120|ref|ZP_03577138.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176286|gb|EEE08715.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221184001|gb|EEE16401.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
          Length = 1029

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 143/405 (35%), Gaps = 17/405 (4%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141
             A    L  +  +  +        R++         +  + + L         ++ +  
Sbjct: 359 TIAIMWVLLVRFHHRVLAGVYARSQRVFDSESLCRSVIEMSPIGLGLISRADGRFMLVSP 418

Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201
                +A                            + ++                     
Sbjct: 419 VLAERVARLGCDCGTLSAQILTQYRAGASNAPFQIELVLPDAQAAAGADAPPLHLEVIAR 478

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              Y      +  +     K  L+ +        +E  + A+  N AKS FLA+MSHE+R
Sbjct: 479 DARYQGSDVLIVAVVDVTAKRQLVQK-------LEEAVRAADSANAAKSSFLAAMSHEIR 531

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN ILG  E++E   +        +  +  +  +   LL L++ ILD +++EAG   +
Sbjct: 532 TPLNVILGNLELLERSVLDLP----QRSRVQTLRNAASGLLELVSGILDFTKVEAGAMPV 587

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380
                  I ++   +      A+ K + +F +I  S S  +  D   + QV  NLLSNA+
Sbjct: 588 ESIEFDAIGVIARELGAYAPVAKAKGLPLFCEIAASASQRMRGDPTRLAQVFGNLLSNAI 647

Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           KFT   G V   +    G        I+I+D G GI   ++  +  +F Q    I     
Sbjct: 648 KFT-AHGHVTARLRAVRGECGTAELAIAIEDTGIGIGSADLHKLFRAFSQVDATIARRYG 706

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           G GLGL +   ++   GG+  + S    G      LP    +  I
Sbjct: 707 GTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFTVRLPLGLDVEPI 751


>gi|148827359|ref|YP_001292112.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittGG]
 gi|148718601|gb|ABQ99728.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittGG]
          Length = 598

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|257870290|ref|ZP_05649943.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804454|gb|EEV33276.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 580

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 7/261 (2%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L  E E+     D TR R  +    +  F+ ++SHEL+TP+ +++GF+E +    +  
Sbjct: 326 LRLFNENELLGISYDLTRVR--QLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGAL-- 381

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + ET   ++  I +    L NLI EI+ LS+ ++  ++ +   I+L  ++ + I   + 
Sbjct: 382 EDRETLVSFLKIIQKDAYRLENLIQEIILLSK-DSHSFDYTAQEINLRALIEQIIRSYEP 440

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A+EK +         L  + +  + ++ ++ NL+ NAV ++   G + V   + + + Q
Sbjct: 441 IAREKQLSFIINGPEELIFI-SKRELLQPILKNLIENAVNYSKSQGTIQVDYSYRAKQLQ 499

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            +S++D G GI   +   +   F +   A      G GLGL I +      GG   + S 
Sbjct: 500 -LSVRDQGIGIDREDQVRIFERFYRVDKARTRNSGGTGLGLAIVKDYTKLLGGTITVDSF 558

Query: 462 LREGVEVIAILPNTRVLNFIP 482
              G      LP     N  P
Sbjct: 559 PGAGSTFTITLPLETKKNSGP 579


>gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS]
          Length = 1238

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPTDQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V + V          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLAVTARPDGDAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|296534470|ref|ZP_06896898.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265204|gb|EFH11401.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 467

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 110/465 (23%), Positives = 193/465 (41%), Gaps = 31/465 (6%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV----------- 93
           L     I  L  L+   +       P    W L  L +  A+L LG +            
Sbjct: 9   LTVSLAIGALLGLIWIGLSVGRHSLPGLRAWGLSLLGISLASLLLGLRGTVPVFLSIDIA 68

Query: 94  -MNSDIKIGEVYVWRIWL------LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT-- 144
            +   + +   +            L   +  G+ W  L  +   T   E   I  S    
Sbjct: 69  NLVMLLALAATWHGARRFDGDPPLLWPVLLPGMIWLGLRALPELTAPVETRVIILSMLSA 128

Query: 145 -LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            L+   ++     +     +               ++ +  + +      +  L    ++
Sbjct: 129 PLIFGTALQFARGYAESPLLRGLLAGAFALQGVLMLLRIPAVAMVGDWQPSDDLPENLWV 188

Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL--EVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
              + +  ++ +        L  E     A + + +  + AE+ N AKSRFLA MSHELR
Sbjct: 189 QMVMLQGILQGVGISFLLLALFRERGERRALAAAADAARSAEQANEAKSRFLARMSHELR 248

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG ++++      P      +E +  I  +G+HLL L+N++LDL+++EAGR  L
Sbjct: 249 TPLNGVLGLAQLLAARQDVP---PAVREQLAMIEGAGRHLLALVNDVLDLAQVEAGRLGL 305

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
             + ++L  +++E + +++  A+ K + +  +  P L   V  D + +RQ++LNLL NAV
Sbjct: 306 QCAPLALQPLLQEALALVRPEAERKRLALALEAAPGLPPAVHGDARRIRQILLNLLGNAV 365

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT  GGRV +      G+G  + + DNGPGI  G+   +   F +     +  E+G GL
Sbjct: 366 KFTPAGGRVTLAASPLPGQGLRLEVVDNGPGIPPGQAARLFRDFQRLEGGAER-EEGSGL 424

Query: 441 GLPIAQSIMANHGGQFLIRSKL-REGVEVIAILPNTRVLNFIPED 484
           GL I   +     G+  + +     G      LP       +P+ 
Sbjct: 425 GLAICAGLALAMQGRIGVEAGPDGRGSRFWVELPL--PPAALPQA 467


>gi|153810017|ref|ZP_01962685.1| hypothetical protein RUMOBE_00398 [Ruminococcus obeum ATCC 29174]
 gi|149834195|gb|EDM89275.1| hypothetical protein RUMOBE_00398 [Ruminococcus obeum ATCC 29174]
          Length = 661

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 138/260 (53%), Gaps = 8/260 (3%)

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                ++AEE N AKS FL +MSH+LRTP+NAI+G++E++E       +NE    Y+  +
Sbjct: 272 LKNALQKAEEGNRAKSSFLFAMSHDLRTPMNAIIGYAELMERHWG---DNELTTNYLHKL 328

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             + Q LL LI  +L+++RIE+G+  L+E+  +L  I     I+L      K + + + I
Sbjct: 329 KGASQFLLALIGNVLEIARIESGKETLNEAPWNLKKINDTLEIVLDREILNKQLHVARNI 388

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNG 409
           +   + V+ D   ++++I+NL+SNA+K+T  GG++ V +              I + D G
Sbjct: 389 EIQHTDVYCDSLKIQEIIMNLVSNAIKYTPDGGKIDVDIEEMEAVGEDSIILRICVSDTG 448

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI++  IP +  +F +   + +S   G GLGL I +S +    G  +++S+  +G   I
Sbjct: 449 IGISQKYIPHIFEAFTREKNSSESGIMGTGLGLRIVKSFVDLMDGSVIVQSEPGKGSSFI 508

Query: 470 AILPNTRVLNFIPEDNHEST 489
             +P   V      D  E +
Sbjct: 509 VEIPCRIVSEEERIDQAEQS 528


>gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis]
          Length = 1238

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPTDQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V + V          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLAVTARPDGDAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 778

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|150017585|ref|YP_001309839.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149904050|gb|ABR34883.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 479

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 139/291 (47%), Gaps = 3/291 (1%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
            +  ++     F   +T  +  +  + L  + +   +  + E+      + R+  E++ +
Sbjct: 162 IMTAVILHNPFFLMTLT-TVVDAIERELLLRKQNRKINKQKELLYESEKKQRELLEKDLV 220

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K  F+  ++HE +TP+N I    ++I  +       ++ K  IG I R+    L L+N 
Sbjct: 221 MKDEFITLITHEFKTPINVIYSAIQLI-EQVYINQIPQSVKNLIGSIKRNAFRQLRLVNN 279

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367
           +LD+++++A +++L+   I ++ I +     +++ A++K I    K +    +   D++ 
Sbjct: 280 LLDITKLKADQFKLTPQNIDIVFITQLITESIKIYAEQKKITFGFKTNTYSINTSIDDEK 339

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
             ++ILNLLSNA+KFT  GG + V +      +   I++ D G GI E +   +   FGQ
Sbjct: 340 YERIILNLLSNAIKFTPEGGNITVEITENMKNKTVSIAVIDTGVGIPEDKREVIFERFGQ 399

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
               +    +G G+GL + + ++    G   + S+L  G +    LP   V
Sbjct: 400 VDNNLSRQAEGSGIGLALVKMLVEILEGSIEVESELGIGSKFTITLPIKEV 450


>gi|323175873|gb|EFZ61467.1| TMAO reductase sytem sensor TorS [Escherichia coli 1180]
          Length = 904

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|28210209|ref|NP_781153.1| sensory transduction histidine kinase [Clostridium tetani E88]
 gi|28202645|gb|AAO35090.1| sensory transduction histidine kinase [Clostridium tetani E88]
          Length = 444

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 6/236 (2%)

Query: 243 EEENLAKSR--FLASMSHELRTPLNAILG---FSEVIELETMGPLNNETYKEYIGDIHRS 297
           EE   AK R  F A++SHE RTP+  IL      E+   +T   + +     Y+ +I ++
Sbjct: 178 EENAYAKMRHKFFANLSHEFRTPITVILSSLYMCEIFLKKTQEDILDIKVTTYLKNIKKN 237

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              LL LIN ++D+++I  G   L +    +++IV E  + +      KNI+I    D  
Sbjct: 238 AYRLLRLINNLIDMTKINCGELILFKENNDIVNIVEETTLRVAKYVYSKNIDIVFDTDVE 297

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D++ + ++ILNLLSNAVKFT  GGR+ V V  T+     IS++D G GI E E 
Sbjct: 298 EKIIACDKEKIERIILNLLSNAVKFTPRGGRILVQVENTND-FVRISVEDTGIGIPEEEK 356

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +   F Q         +G G+GLPI +S++  H G   + S   EG +    LP
Sbjct: 357 DLIFEPFTQVDKGFSRIAEGSGIGLPIIKSLVEMHKGIIWVESICGEGSKFFIELP 412


>gi|153208507|ref|ZP_01946791.1| putative sensor protein gacS [Coxiella burnetii 'MSU Goat Q177']
 gi|120575963|gb|EAX32587.1| putative sensor protein gacS [Coxiella burnetii 'MSU Goat Q177']
          Length = 808

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 246 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVPEETKTS 305

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 306 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRT 365

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 366 IELLQPVAHQKKLTLACEVDEGVPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 424

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 425 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 484

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 485 VKRYVDAMGGEITVDSEVGKGTCFNVIIP 513


>gi|119387834|ref|YP_918868.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119378409|gb|ABL73172.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 901

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 145/330 (43%), Gaps = 9/330 (2%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK- 209
           + A     L           + +L+  A +   V       +   +              
Sbjct: 568 LGAARAEALFRDHARETGTALDSLTADARLVDRVERQIAGAIGTASARVMVESAAQEESL 627

Query: 210 ---SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
                ++I+   ++      ELE A        ++ +  +  K  F++S++HELRTPL +
Sbjct: 628 SLGDVLEIIDEASQVRTYARELEEATVELRAANEKLKSLDQLKDDFMSSVTHELRTPLTS 687

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I   +E++       +  +  +E++  I    + L  L+N++LDL++IE+G  E   + +
Sbjct: 688 IRALTELMLDTP--DIQPQEREEFLNIILSESERLSRLVNQVLDLAKIESGMAEWHNTDV 745

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
            +  ++   +       +E+  E+   +   +  V AD   + QV++NLLSNA KF   G
Sbjct: 746 DMKALIVAALRSTAELFRERGAEVLADLPEQVPMVLADPDRLTQVLVNLLSNAAKFVPEG 805

Query: 387 -GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
            GRV V +    G    ++++DNGPG+A  +   V   F QG  A      G GLGLPI+
Sbjct: 806 RGRVEVALRHR-GDELVVTVRDNGPGVAPEDQAAVFDKFRQGGEAGNRP-PGTGLGLPIS 863

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + I+ N GG+  + S+  +G      LP  
Sbjct: 864 RQIVVNLGGRMWLDSQPGQGACFAFSLPLR 893


>gi|323379162|gb|ADX51430.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
          Length = 914

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|261251133|ref|ZP_05943707.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
 gi|260938006|gb|EEX93994.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
          Length = 852

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 156/328 (47%), Gaps = 17/328 (5%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
           + + ++      I +    AT     T I    F+ N+  ++  +    ++A+ +   S 
Sbjct: 394 ARRLLIESLQPHIRMCAQGATLTGINTTIAKKTFRWNLSPITTDSSVIRIMAQGQDITSF 453

Query: 235 SDETRKRAEEENLA------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            +  ++       A      ++ FLA MSHELRTPLN ILG S++++ +   P + E   
Sbjct: 454 IEAEKQSEAAREEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKSKMDDPRDVE--- 510

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            ++  +  SG+HLL ++N+ILD S+IE G++ + ++A  L ++      + +     K +
Sbjct: 511 -HMEVLCNSGEHLLAVLNDILDFSKIEHGKFHIEKTAFRLAELTNTVEKIFKPLCDNKGV 569

Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYIS 404
           +   + +  S S V++D+  + Q++ NL+SNAVKFT   G+V V V            + 
Sbjct: 570 DFSVESNIESDSWVFSDQIRINQILFNLVSNAVKFTHQ-GQVQVVVNALERDEATWLKVD 628

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + ++  +   F Q          G GLGL I +S+++   G+  I S++ +
Sbjct: 629 VFDTGIGIEKSKLKDIFEPFVQAESTTTREYGGSGLGLAIVRSLVSIMDGEIEIESEVAQ 688

Query: 465 GVEVIAILPNTRVLNF--IPEDNHESTQ 490
           G      +P    L    +PE     ++
Sbjct: 689 GTHFTVHVPIQLGLTPTFLPEKTSPLSE 716


>gi|193077064|gb|ABO11821.2| putative two-component sensor kinase [Acinetobacter baumannii ATCC
           17978]
          Length = 1154

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 607 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 667 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 783

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 784 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLVDLLGGQLSVTSQLN 894

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 895 QGSQFKIKFYLPSKEVVHPI 914


>gi|78043258|ref|YP_358963.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995373|gb|ABB14272.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 485

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 139/321 (43%), Gaps = 14/321 (4%)

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           +   +      ++V      + +   L   ++  +   LS     +  +   N+      
Sbjct: 165 VRKILTRFSITMLVVFLLILVATNGTLTFLVSRSILKPLSQLKQASEQIKNGNLDFTVKN 224

Query: 219 AEKDDL------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           + KD++        E+      S+E +K+ EE N      +A++SH+L+TP+ AI G+ E
Sbjct: 225 SAKDEIGELFVAFEEMRKRLKESEELKKQYEE-NR--KELIANISHDLKTPITAIKGYVE 281

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            I        + E    Y+  I+R    +  LI+E+   S+++  +   +   ++L   +
Sbjct: 282 GIRDGV--ADSPEKLSRYVDTIYRKILEVDGLIDELFLFSKLDLKKLPFNFEKVNLNRYL 339

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHV 391
            +    L+   ++K IE+   +      VWAD + +++VI N++ N+VKF      +V +
Sbjct: 340 SDVAEELEFDLRKKGIELKLHLPCQQVFVWADREKLKRVINNIVDNSVKFMDKENSQVVI 399

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            V     +   I I DNG GI    IP +   F +   A      G GLGL IA  I+  
Sbjct: 400 NVK-DEEKRVIIEIADNGRGIPLDAIPKIFERFYRVDSART-GTSGSGLGLSIAAKIIEE 457

Query: 452 HGGQFLIRSKLREGVEVIAIL 472
           HGG+    S L EG  +   L
Sbjct: 458 HGGEIWANSVLNEGTTISFTL 478


>gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1209

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E +  +    E  + A + N AKS FLASMSHE+RTP+ AI+G  E+   + +     
Sbjct: 693 ITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGTM 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            +    +   HRS   L+ LI E LDL+RIEAG  +LS +  SL  +    I +   +A+
Sbjct: 753 PSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAR 810

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399
           EK +E+  +         W D   +RQV+ N+L NA+KFT   G V V +  TS      
Sbjct: 811 EKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQ-GAVVVRLDVTSDSPEST 869

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I+D+G GI       V   F Q +    +   G GLGL I + ++    G   + 
Sbjct: 870 RVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVELMRGDISLH 929

Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDN 485
           S+  +G  V   LP TRV    +P D+
Sbjct: 930 SEPGKGTLVTIDLPLTRVSEPVLPADD 956


>gi|71907253|ref|YP_284840.1| PAS [Dechloromonas aromatica RCB]
 gi|71846874|gb|AAZ46370.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 802

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 10/282 (3%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +      A +D L   + +        +  A+  + AKS FL++MSHELRTPL+ ILG  
Sbjct: 396 MAEQELLAHRDHLEELVSIRTHDLSIAKDAADAASRAKSAFLSNMSHELRTPLHGILGLG 455

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
            +++    G +N++  +  +  +  +  H+ +++N +LDL+RIEAGR+ +  +  S   +
Sbjct: 456 NILK----GKINDQHSRLLVAKLLTTASHMNDVVNNVLDLARIEAGRFVIKNADFSTATL 511

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
             +   +  + AQ K +E     D     V  D   + QV++N++ NA+KFT   G +HV
Sbjct: 512 KEKLDSICAINAQAKGLEYKANFDL-PPRVHGDSVQILQVLINIVGNAIKFT-EHGSIHV 569

Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           +    S           ++D G GI   ++ ++   F Q    I     G GLGL I + 
Sbjct: 570 SAFVLSEESSRLRLCFEVRDTGIGIPPEKLESIFEDFEQADGGINRKYGGSGLGLAITRR 629

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           ++    G+  + S+   G      +   +V +       E++
Sbjct: 630 LVQMMEGETQVESQPGIGSLFRFEINVGKVASHDTGGATEAS 671


>gi|331017517|gb|EGH97573.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 744

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 147/331 (44%), Gaps = 11/331 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S               L      ++ ++K 
Sbjct: 418 ASGVLAMSLPKPVDNGVIWFRPEVKQSVQWSGDPNKPLNLDASDNTLRLQPRTSFEIWKV 477

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEEENLAKSRFLASMSHELRTPLNA 266
            +  ++ +    D+ A  ++ +S    D  R+  + ++   A+   +A +SH+LR P+  
Sbjct: 478 EMTGIATKWSHGDVFAANDLRRSALENDLARQVSKEQQAVRARDELVAVVSHDLRNPMTV 537

Query: 267 ILGFSEVIELE--TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      I  + ++   +  L+ ++LD S+IEAGRY ++  
Sbjct: 538 ISMLCGMMQKSFSSDGPHTSRRISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQ 597

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + +  I  E   +L   A +K+IEI    +P +  V AD + + QV+ NL+ NA+KFT 
Sbjct: 598 PLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDI-KVNADPERLFQVLSNLIGNAIKFTP 656

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GR+ V    ++G     +++D+G GI   ++P +   +        +   G GLGL I
Sbjct: 657 KLGRIGV-AAMSNGDEVVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPT---GTGLGLYI 712

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +Q I+  HGG+   +S++  G E    +P  
Sbjct: 713 SQGIIKAHGGELAAQSQVGHGSEFRFTVPIA 743


>gi|315644525|ref|ZP_07897657.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280032|gb|EFU43329.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 358

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 150/366 (40%), Gaps = 31/366 (8%)

Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
             +G  WT  T V    +       +     L+ L +  +  F+    V + F    +A+
Sbjct: 23  AVLGASWTAATYVTRFVYNWTGTPKWDYVVHLLDLFVGVIIFFLCMLIVGMFFKHRQIAM 82

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
            T          I+ A    +   F   +    ++   K+++  +  +D+  EL   +S+
Sbjct: 83  LTA---------ITDAMRRISQGDFNVKMDDQKWRGEFKMIA--SSINDMAGELGRMESM 131

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
                         +  F++++SHE+++PL +I GF+  +    +     E    Y+  I
Sbjct: 132 --------------RQDFISNVSHEIQSPLTSIRGFARALRNPRL---TEEKRARYLEII 174

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
               + L  L + +L LS +E  +     +   L   +RE ++  + +   K I++   +
Sbjct: 175 EGESRRLSQLSDNLLKLSSLEGDQPAFQRARYRLDGQLREVVLANEPQWLAKRIQVDLDL 234

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
                 + A E  + QV  NLL N++KFT   G + + V         ++I D G G+ E
Sbjct: 235 AE--VQIEATEDLLNQVWTNLLHNSIKFTPEDGIITI-VLKADQDEAEVTITDTGVGMTE 291

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +   +   F +   +   A  G GLGL I + I+  H G+  ++S+L +G      +P 
Sbjct: 292 SDQLHIFERFYKADKSRNRAAGGSGLGLSIVKRIVDIHQGRIAVQSELGKGSTFTVKVPY 351

Query: 475 TRVLNF 480
            R L+ 
Sbjct: 352 KRSLDT 357


>gi|225420050|ref|ZP_03762353.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
 gi|225041306|gb|EEG51552.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
          Length = 374

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 149/342 (43%), Gaps = 11/342 (3%)

Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLATA 196
            +       + +    + +      +      +  A+    ++S   +  ++   +  ++
Sbjct: 22  LVEVFVVANMTMIARYMEDAGKLNRLAELLLSMNAAVVLVYVVSGILLFSVTFLLLQESS 81

Query: 197 LSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAKSLSDETRKRAE---EENLAKS 250
           + + ++I+  +   +   L+   +    D+  +       ++++ R+  E   E    K+
Sbjct: 82  IRYISHISDAIQNISEGDLNTTIDVIGDDEFSSMAANLNKMAEDIRQLMEKERESERTKN 141

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             + +++H+LRTPL +I+G+ E++   T   ++ E   +YI   +   + L  LI ++  
Sbjct: 142 ELITNVAHDLRTPLTSIIGYLELLAGNTR--IDPEMQHKYIEIAYGKSKRLEKLIEDLFG 199

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            +++  G+  +  + + L+ ++ + +        EKN+    + +     + AD   + +
Sbjct: 200 FTKLNYGKMSMHVAQLDLVKLLGQLLEEAYPNFAEKNLSYDLQSNVPAKMISADGNLLAR 259

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           +  NL+ NA+K+ A G RV V + +       +S+ + G  I   E+P +   F +   +
Sbjct: 260 LFDNLIGNAIKYGADGKRVLVQI-FAGEEVVTVSVTNYGYVIPPDELPLIFNKFYRVERS 318

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             S+  G GLGL IA+ I+  HGG   + S L  G      L
Sbjct: 319 RSSSTGGTGLGLAIAKEIVDMHGGTIGVTSDLN-GTVFTVKL 359


>gi|326202730|ref|ZP_08192598.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987314|gb|EGD48142.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 463

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 11/305 (3%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             + + L    ++ + +    L+  +   +     I   + K        +   D++   
Sbjct: 167 LFLSMTLLIVILICIFISSTILSKTIIEPVREVNDIARKMSKGQFNERINKHYNDEIGEL 226

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            +    ++ E  K  E     K+ F++S+SHELRTPL AI G+ E I   +    + E  
Sbjct: 227 SDTLNYMASEILKAEET----KNDFISSVSHELRTPLTAIKGWGETIITGSF--EDKEEI 280

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           ++ +  I R    L N+++E+LD S++E  +  L+     + + + E + +   RA+++ 
Sbjct: 281 EKGLKVILRETDRLKNMVDELLDFSKLEGNKLVLNMEKTDIKEEIEEILRLYDGRAKKER 340

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +  K   ++     D    +QVI+N+L NA+KF+     + + V  T      I I D
Sbjct: 341 ISLQSKFTENIPEFSVDRNRFKQVIINILDNAMKFSPKDSNILINVS-TLENELIIEIID 399

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           NG GIA+ ++P +   F +G     S + G G+GL +   I+  HGG   ++S+L +G  
Sbjct: 400 NGYGIAKEDLPKIKDKFFKG----NSKKSGSGIGLAVCDKIIKLHGGSLELKSELNKGTN 455

Query: 468 VIAIL 472
           VI  L
Sbjct: 456 VIIKL 460


>gi|168000947|ref|XP_001753177.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162695876|gb|EDQ82218.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 970

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 36/327 (11%)

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSD 236
            +       +    +   +     +    + +     +++ +    E        ++   
Sbjct: 295 DLFGEKTFLVAVEPVLSQSGEAMGINYVAMDVSEQVDKRERISRLREQVAVQKAMEAELH 354

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           +T    EE   AK + LA+MSHE+R+PL+ ++  +EV+    +    +E  ++ +  +  
Sbjct: 355 KTIHITEEAMRAK-QMLATMSHEIRSPLSGVVSMAEVLATTQL----DEEQRQLVDVMVS 409

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           SG  +L LIN+ILDLS++++G  +         ++V+  + M     Q KN+ +  +I  
Sbjct: 410 SGDLVLQLINDILDLSKVQSGAMKFEAKKFRPREVVKHVLQMALANTQSKNLILEGRIYD 469

Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----------- 404
            +   V  D   +RQV  NL+ NA+KFT   G V ++V         I            
Sbjct: 470 DVPLEVIGDVLRIRQVFTNLVGNAIKFTHE-GNVTISVRVVPPPPPSIERAAKNEPAVDE 528

Query: 405 -----------IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      + D+G GI E  +PT+   + Q S        G GLGL I ++++   G
Sbjct: 529 GVEDTVWLLCEVSDSGIGIPESALPTLFEKYTQVSATHARKYGGTGLGLAICKNLVELMG 588

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNF 480
           G   + SK   G      LP  RV   
Sbjct: 589 GNLTVVSKENHGSTFSFALPL-RVHPE 614


>gi|145631979|ref|ZP_01787731.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae R3021]
 gi|144982363|gb|EDJ89943.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae R3021]
          Length = 598

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 1118

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 10/305 (3%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              L+        L ++    L   A++  L     +A        +  EE + AK+ F 
Sbjct: 294 LALLAVGLNPYRKLDEAYRNFLQQIADRIALGLGNVMAYEEEQRRLRALEELDKAKTLFF 353

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
            ++SHE RTPL  +LG  E +      P  +E  K  +   HR+   LL L+N +LD SR
Sbjct: 354 TNISHEFRTPLMLMLGPLEELLR-LNAPEWSEAEKAKVEVTHRNALRLLKLVNTLLDFSR 412

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E GR         L    +      +   ++  ++   K+       + D     +V+ 
Sbjct: 413 MEGGRGHARFVRTDLAAYTQNLASNFRSVIEKAGMQFEVKVAGDECDAYVDRPMWEKVVF 472

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA K+T   G + + +     +   +++ D G GI   E+P V   F +   +   
Sbjct: 473 NLLSNAFKYTLE-GTITLELSA-EEKAVRLAVSDTGVGIPAHELPHVFERFHRVQNSAGR 530

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-------NTRVLNFIPEDNH 486
             +G G+GL + + ++  HGG   + S   +G      +P        ++V    PE   
Sbjct: 531 TYEGTGIGLSLIRELVHLHGGDIGVESMEGKGSRFTVTVPLGNKHLDASQVFETDPEMAE 590

Query: 487 ESTQY 491
             + +
Sbjct: 591 AISDF 595



 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 100/260 (38%), Gaps = 25/260 (9%)

Query: 229  EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            E  +   D+  +     N     F    SH+L+ PL  I  F  +IE        +   K
Sbjct: 870  EELERKVDQRTQDLLHANKELESFNYVASHDLQEPLRKIQTFIHLIERNDFDSDLS---K 926

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRI-EAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             Y   I+ + Q +  LI  +L  SR+ E G    +   + L  ++ +  +  +L  +EK 
Sbjct: 927  GYFKKIYLASQRMGELIQSVLSYSRLSENGE---NLQLVDLNKVIDDIRVDFELAIEEKQ 983

Query: 348  IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----------- 396
              +      +L  + A+   M Q+  NL+SN++KF+     + +T               
Sbjct: 984  AAVVC---ENLPVLRANVLQMNQLFSNLISNSLKFSNGKPEIRITGRREAGRDIPLAGTG 1040

Query: 397  --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               G   +I+I+DNG G        +   F +     +    G G+GL I + I+  H G
Sbjct: 1041 PREGDYYHITIRDNGIGFEPEFSEKIFALFQRLH--RRQEYAGTGIGLSIVKKIIEQHNG 1098

Query: 455  QFLIRSKLREGVEVIAILPN 474
                 S   EG      LP 
Sbjct: 1099 YVSAESHPGEGAVFHLWLPA 1118


>gi|212218276|ref|YP_002305063.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012538|gb|ACJ19918.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 831

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 269 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVPEETKTS 328

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 329 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRT 388

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 389 IELLQPVAHQKKLTLACEVDEGVPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 447

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 448 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 507

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 508 VKRYVDAMGGEITVDSEVGKGTCFNVIIP 536


>gi|229589677|ref|YP_002871796.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361543|emb|CAY48419.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1206

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 137/274 (50%), Gaps = 18/274 (6%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           ++E +       E ++ A+  N AK+ FLA+MSHE+RTP+NA++G  E+ +        +
Sbjct: 691 VSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGRVD 750

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              ++ +     + + +L LI +ILD++RIE G   L+ +  +L +++     + +  A+
Sbjct: 751 ---QDALEVASMASRSMLELIGDILDIARIETGHLSLTLAPANLHEMLASVARVFEGLAR 807

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SG 398
           +K + +  ++DP +   V  D    +QV+ NLL NA+KFTA  G+V +    T       
Sbjct: 808 DKGLLLHVELDPMIDRSVLIDPMRFKQVVSNLLGNAIKFTAT-GQVRLGAQCTPALASDP 866

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
               + ++D G GI+  +   +   F QGS   +SA  G GLGL I++++    GGQ  +
Sbjct: 867 LNLRLYVEDTGIGISAEDQQRLFNPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQLHL 926

Query: 459 RSKLREGVEVIAIL--------PNTRVLNFIPED 484
            S L +G  V   L        P +     +P  
Sbjct: 927 SSVLGKGTRVDVTLALELATAAPLSSSAPPVPPA 960


>gi|330876995|gb|EGH11144.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 783

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKASNMRLRESNEELQIARSTALDMANARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGGLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHQDAASREHRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 GTGLGLALTNNLCEAMHGTLSIQSQSGFGSQFCAELPL 517


>gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
 gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
          Length = 585

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 92/365 (25%), Positives = 156/365 (42%), Gaps = 20/365 (5%)

Query: 126 LVEPGTWTPEYLTIYKSATLLI---ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +       P    I      ++   A+   +    ML               +T ++   
Sbjct: 211 VYRSAKLGPRGGVILAGLDGVVRARAIEGGSPEADMLLPGALARLLGAQQDGATTSVSFD 270

Query: 183 HVLDISLAGMLATALSFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
            +  I     +                  T+   ++ + +L        +   +    S+
Sbjct: 271 DLPRIVAYSRVGDYPLAVVSSTTQGNALATWRTTRNAIIVLEALLSLVVVGFVVLFLSSI 330

Query: 235 SDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               R  A+    + AKS FLA+MSHELRTPL +I GF+E++EL +  PL     +E   
Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPL----VREQSA 386

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I +  +HL  L+ EILDL+++EAG        ++L  +V E   + ++ A  K++++  
Sbjct: 387 LIRQGAEHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQLEA 446

Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGP 410
           ++ P     +  D   ++Q++ NLLSNA+KFTA  GRV + V   +   Q    + D GP
Sbjct: 447 RLLPEAEQPLVTDRLRLKQILNNLLSNAIKFTAQ-GRVELAVEPDADGRQMLFHVTDTGP 505

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA      +   F QG+  +     G GLGL +++++    GG   ++S   EG     
Sbjct: 506 GIAPELHEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTL 565

Query: 471 ILPNT 475
            LP  
Sbjct: 566 ALPLQ 570


>gi|325272454|ref|ZP_08138839.1| Hpt sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324102411|gb|EGB99872.1| Hpt sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 1021

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 11/314 (3%)

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
                   L + +  + A  L+   +   +L K   +    Q    D +A          
Sbjct: 460 SPWRDYRTLALQVLVLSALLLAGVVFWNSYLRKLINQRTEAQHALQDQLALSRGLLEQLR 519

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + +  AE+ +  KS FLA+MSHE+RTP+NA++G  E+   +     ++      +   H 
Sbjct: 520 QAKDDAEQASQTKSTFLATMSHEIRTPMNAVIGLLELALEDCRSGRSD---IHTLQTAHD 576

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           S   LL LI +ILD+SRIE+G   L      L ++VR  + + +  A+ K + +  ++  
Sbjct: 577 SALGLLELIGDILDISRIESGHITLQPVPTDLRELVRATLRVFEGNARAKGLHLHGELPA 636

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYISIKDNGPGI 412
             + V AD   ++Q++ NL+SNA+KFT  G  + ++ +   +G G     + ++D G GI
Sbjct: 637 EPAWVLADPLRLKQILSNLISNAIKFTDRGEVQANLLLPVIAGHGVLPVELDVRDTGIGI 696

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA-- 470
           +  +   +  +F Q         QG GLGL I++++    GG   ++S    G  V    
Sbjct: 697 SPADQARLFNAFVQADGPRAR--QGAGLGLVISRTLAELMGGTLKLQSVEGVGTRVQVNL 754

Query: 471 ILPNTRVLNFIPED 484
            LP       +PED
Sbjct: 755 QLPTCAPPAAVPED 768


>gi|317476223|ref|ZP_07935474.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907634|gb|EFV29337.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
                  + AEE    ++ F+A+M+HE+RTPLN I+GF+ ++       L+ E    ++ 
Sbjct: 50  QALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTILAET--DNLDKEQRVAFLK 107

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
           +I+ +   LL L+N++LD S+IEA   E ++  + +  ++ E  I     ++   I+   
Sbjct: 108 EINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILETCIAENAHSRLPGIQAEF 167

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   +  D     QV+ NL+ NA+KFT   G V V     S +  Y  + D G GI
Sbjct: 168 VEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQ-GCVKVGCRRLSNQNFYFYVADTGCGI 226

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     +   F +    +    +G GLGL I +SI+ ++GG   + SK  EG      L
Sbjct: 227 EEESRRAIFERFVK----MNYNIRGTGLGLSICKSIIEHYGGGIGVESKKGEGSTFYFTL 282

Query: 473 PNT 475
           P+ 
Sbjct: 283 PSK 285


>gi|331657054|ref|ZP_08358016.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206]
 gi|331055302|gb|EGI27311.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206]
          Length = 715

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 18/344 (5%)

Query: 153 ALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           AL   +          P+     + Q ++   +            L     +      S 
Sbjct: 148 ALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 207

Query: 212 VKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +   +    A+     AEL+       + R  AE+ + AKS FLA+MSHE+RTPL  I
Sbjct: 208 HALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGI 267

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG--RYELSESA 325
           LG ++++             ++ +  I  SG+ LL ++N+ILD S IEAG     +S+  
Sbjct: 268 LGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEP 323

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
                ++   + ++  R + + I +  +I   + + +  D + +RQVI NLLSNA++FT 
Sbjct: 324 FEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVITNLLSNALRFTD 383

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + +    T G    + ++D+G GI   ++  +   F Q S        G GLGL I
Sbjct: 384 E-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR----GGTGLGLTI 437

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +  +    GG+    S    G      LP       +P+  +++
Sbjct: 438 SSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 481


>gi|222110689|ref|YP_002552953.1| pas/pac sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
 gi|221730133|gb|ACM32953.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
          Length = 465

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    +  F+A++SHE+RTPL  ++GF E ++   +   +NE    Y+  + +    
Sbjct: 198 ALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTLQL---SNEERARYLRMMSQQAVR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA---------QEKNIEI- 350
           + NL+ ++L LSR+E          +++  ++R C    +  +         +   I   
Sbjct: 255 MQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQNQPGKPHQITFP 314

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +   +   V  +   ++  + NL++NAV++T  GG + V             ++D+GP
Sbjct: 315 TAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPDGSARFMVRDSGP 374

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +P +   F +   +      G GLGL I + ++  HG    + S + +G     
Sbjct: 375 GIEPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQVASVVGQGSTFTV 434

Query: 471 ILPNTR 476
           + P +R
Sbjct: 435 VFPPSR 440


>gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 778

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|329123765|ref|ZP_08252324.1| aerobic respiration control sensor protein ArcB [Haemophilus
           aegyptius ATCC 11116]
 gi|327469668|gb|EGF15136.1| aerobic respiration control sensor protein ArcB [Haemophilus
           aegyptius ATCC 11116]
          Length = 598

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKS 210
           +L   M+   + L    +        I  + +      G+L       FFT +   L  S
Sbjct: 24  SLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHS 83

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + + S     ++ +AE   A+    +  ++ E+ +  KS  LA++SHE RTPLN I+G 
Sbjct: 84  RLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGL 143

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S++     +    ++  + Y+  I+ S   L  + ++I+DL +I+A R EL+        
Sbjct: 144 SQI----LLDDELDDLQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPA 199

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++ +        A+EKN+    +++P+L   +  D   + Q++ NL+SNAVKFT   G +
Sbjct: 200 LLNDIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQ-GNI 258

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            + +        +I +KD G GI+  E   +   + Q   + +    G G+GL I++++ 
Sbjct: 259 ILKIMRNQDCYHFI-VKDTGMGISPEEQKHIFEMYYQVKESRQ-QSAGSGIGLAISKNLA 316

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
               G   + S+  +G      L
Sbjct: 317 QLMEGDLTVESERGKGATFHLTL 339


>gi|313123385|ref|YP_004033644.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279948|gb|ADQ60667.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 502

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 155/387 (40%), Gaps = 22/387 (5%)

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IA 148
           + +        + Y  R        A    W ++  V+      + +      + +  + 
Sbjct: 112 RDLAPKVQGRVKHYGLRKRSNRLFAAESYTWVVVPQVQGSGSNKKVVGAIMIGSRVKDVL 171

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            ++S     +    V      ++++       +  +  +SLA            + +   
Sbjct: 172 QTVSQAKANLARALVITFAVSLILSFILAYYQTGRIKKLSLAARKVADGDLDVQVDHR-- 229

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
             +   +   AE       +   K+ ++E + + E     + +F+  ++HE+RTPL  I 
Sbjct: 230 --HADEIDDLAEN--FNEMVRSLKASNEEVKAQEER----RDQFMQDVAHEMRTPLTTIN 281

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G  E ++      +  E+  E I  + R  + L+ L+NE LD  +I +G+ ++ +S  + 
Sbjct: 282 GLLEGMK---YDAIPEESIPESIDLMSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNA 338

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
             I+ +    L   A +   +I       L  V+AD+   +Q+++NL  NA++FT   G 
Sbjct: 339 RTIMNDVQQQLTQNAAKNGDKIILDAPEDLP-VYADQDRFKQMLVNLTQNAIQFTN-NGT 396

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV---GLGLPIA 445
           + +  G     G   S++D G G+ + +   +   F +   A      G    GLGL I 
Sbjct: 397 ITLR-GRRLQHGATFSVQDTGIGMTQEQSKYIFERFYKADPARAR-YGGTGESGLGLSIV 454

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472
            S++  HGG+  + SK  EG   +  L
Sbjct: 455 LSLVRQHGGEIKVISKPHEGSTFMITL 481


>gi|331676785|ref|ZP_08377481.1| TMAO reductase sytem sensor TorS [Escherichia coli H591]
 gi|331075474|gb|EGI46772.1| TMAO reductase sytem sensor TorS [Escherichia coli H591]
          Length = 914

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|323165485|gb|EFZ51272.1| TMAO reductase sytem sensor TorS [Shigella sonnei 53G]
          Length = 904

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGQLMGAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|300819426|ref|ZP_07099623.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1]
 gi|331667386|ref|ZP_08368250.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271]
 gi|300528022|gb|EFK49084.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1]
 gi|331064971|gb|EGI36866.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271]
          Length = 904

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|291482777|dbj|BAI83852.1| hypothetical protein BSNT_00667 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 472

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 15/338 (4%)

Query: 140 YKSATLLIALSISA--LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
           +K A LLI+       + N +  Y  +     +V+ +    ++S   +        AT  
Sbjct: 142 FKGAVLLISPISGVEQMVNQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDK 201

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   HL  S         E   L ++  +      ++R   E     + +F+A +S
Sbjct: 202 VASGDYDIHLENS------YGDEIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVS 255

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL  I G  E +       +  +   +    I    + +L L+ E LD  +I + 
Sbjct: 256 HELKTPLTTINGLVEGLNSH---TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQ 312

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  L++  + LI++       LQ +A+EK  ++  +++     V AD     Q+++N+  
Sbjct: 313 QITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQVE-DHVIVHADYDRFIQILVNITK 371

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQ 436
           N+++FT   G + +  G    +   I I+D G GI + +I  +   F +  I+   +A  
Sbjct: 372 NSIQFT-QNGDIWLR-GMEGYKETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYG 429

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             GLGL I + ++  H G   I+S+  +G + I  LP 
Sbjct: 430 EYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLPL 467


>gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1138

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 5/299 (1%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           +   HV    +       +           ++  ++       + L+ E   A + +   
Sbjct: 667 LFWEHVTLSRVTIGGVERILATAIDISDRKRAEQQLAEYGEHLEVLVDERTTALAQARTA 726

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
              A+  N AK+ FL+ MSHELRTPLNAILGF +++ L    PL+     + + +I R+G
Sbjct: 727 IADAQAANAAKTEFLSRMSHELRTPLNAILGFGQLLALPGDAPLS-AQQADNVQEILRAG 785

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           +HLL  +NE+LDL+RIE+GR ELS  A+ L  +V EC+ +++  A+ + + I   ID S 
Sbjct: 786 RHLLEQVNEVLDLARIESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDS- 844

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             + AD   +RQVILNLLSNA+K+    G V +      G     ++ D+G GIA   +P
Sbjct: 845 -MLQADPTRLRQVILNLLSNAIKYNREHGTVRLDNTR-EGERLRFAVTDSGRGIASEHLP 902

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +   F +   + +   +G G+GL +++ ++    G   + S++  G      LP  RV
Sbjct: 903 RLFQPFERLESSYE-GIEGSGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLPLARV 960


>gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 778

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
 gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
          Length = 409

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            L K           ++ L    +  K   ++  ++AE+ +  KS FLA+MSHE+RTPLN
Sbjct: 1   MLQKYAEANRKLSLAQEQLAIATQKLKEYEEKA-QKAEKASKMKSLFLANMSHEIRTPLN 59

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI GFS V+        + +   ++   I  +   L++L+NEILDLSR+EAG   + +S+
Sbjct: 60  AIEGFSRVLVET----DSQDDRMKFFEIIESNNNRLMSLVNEILDLSRVEAGEITMKKSS 115

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L  +      + + R  E  +++  K      +   D   + QV  NL+SNA+K T+ 
Sbjct: 116 TDLNQLCDSIKNLFKFRCPET-VKLSWKKPNMAVTFNTDANRITQVFSNLISNALKHTSA 174

Query: 386 GGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G +                ++D G GIA  ++  +  ++        +   G GLGL +
Sbjct: 175 -GSITYGYRMLDEGSNIEFFVQDTGTGIAPEDLQHIFNTYVSRDAETNNN--GYGLGLAL 231

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            + I+   GG+  + SKL EG     +LP  
Sbjct: 232 CKIIVEKLGGKIYVESKLGEGSLFHFVLPFE 262


>gi|284920828|emb|CBG33891.1| Two-component sensor kinase and response regulator [Escherichia
           coli 042]
          Length = 904

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPTKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG     S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGVLSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|317403605|gb|EFV84095.1| proline sensor PrlS [Achromobacter xylosoxidans C54]
          Length = 944

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 145/339 (42%), Gaps = 17/339 (5%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFF 200
           T  +AL + +  +  + +   L+   + +A+  Q   S     +L   L       +  F
Sbjct: 384 TAPVALCVLSRLDGRVVFGNALAIQWLGIAVGEQPRDSPEANKLLRQVLGASRPGTIETF 443

Query: 201 TYITYHLFKSNVKILSCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
                            + +   L     I+     +    + +++A+  N AKS FLA+
Sbjct: 444 RTHEGRPLFVAFAPTRYKKQDVVLCAFADISARAEMEHTLAQAKQQADRANEAKSTFLAT 503

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  +LG  EV+ L  +    ++  + ++  I  S   L  LI++ILD+++IE
Sbjct: 504 MSHEIRTPLYGVLGTLEVLSLTHL----DDEQRRHVDRIQDSSVILQQLISDILDITKIE 559

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374
           +G+  L        ++V+ C+      A++K + I+  ID S    V  D   +RQ++ N
Sbjct: 560 SGQLGLEMDGFDPRELVQHCVASYAGMAEQKGLVIYSCIDTSTPAWVVGDGGRIRQILNN 619

Query: 375 LLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           L++NA+KFT  G  V  +            +  + D+G GI+      +   F Q   + 
Sbjct: 620 LVNNAIKFTDSGHVVARLRAEVLPDGRARLHFQVVDSGVGISAENQVCLFEPFYQID-SG 678

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
               +G G+GL I   +    G    + S+L  G     
Sbjct: 679 SHLVRGAGIGLSICARLAELMGSTIQVTSELGLGSSFSI 717


>gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 923

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 31/288 (10%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            V      A+  +  A  +  +S  ++T    EE   AK + LA+MSHE+R+PL+ ++G 
Sbjct: 331 QVDKREKMAKLREDNAVRKAMESELNKTIHITEETMRAK-QMLATMSHEIRSPLSGVVGM 389

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           +E++    +    ++  ++ +  +  SG  +L LIN+ILDLS++E+G  +L  +     +
Sbjct: 390 AEILSTTRL----DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPRE 445

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           +V+  +       ++         D     V  D   +RQ++ NL+SNA+KFT   G V 
Sbjct: 446 VVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHE-GNVG 504

Query: 391 VTVGWTSG-----------------------RGQYIS--IKDNGPGIAEGEIPTVLTSFG 425
           + +   S                           +I   + D G GI E  IP +   + 
Sbjct: 505 IKLQVISEPSFARDNTLTADTEEQEQNGLTETSVWICCDVWDTGIGIPENAIPCLFKKYM 564

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           Q S        G GLGL I + ++   GGQ  + S++ EG     ILP
Sbjct: 565 QASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGSTFTFILP 612


>gi|255723892|ref|XP_002546875.1| hypothetical protein CTRG_01180 [Candida tropicalis MYA-3404]
 gi|240134766|gb|EER34320.1| hypothetical protein CTRG_01180 [Candida tropicalis MYA-3404]
          Length = 2503

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 233  SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
            S  +  +  AE+    K+ FLA+MSHE+RTP N++L FS  +   T+      T ++Y+ 
Sbjct: 1977 SQMEIAKSAAEDATAEKASFLANMSHEIRTPFNSLLSFSIFLLDTTLTH----TQRDYVE 2032

Query: 293  DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
             I  S    LN+I+ IL  S+IE G + L  +  SL D +   I +         IE+  
Sbjct: 2033 AIKSSAMITLNIIDGILAFSKIEHGSFTLDNAPFSLNDCIESAIQLGGEVVTTSEIELVF 2092

Query: 353  -KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407
                P + SV  D    RQ+++NL+ NA+KFT+  G V V+   T          +S+KD
Sbjct: 2093 FNNCPEIESVVGDVTRFRQIVINLVGNAIKFTST-GYVSVSCSATKIGDNRYELKVSVKD 2151

Query: 408  NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
             G GI +     V  +F Q   + +    G GLGL I++ +    GG+    S   +G  
Sbjct: 2152 TGIGIPDQSQTKVFGAFSQVDGSSRREFGGAGLGLAISKKLAEIMGGKLRFESDYGKGTT 2211

Query: 468  VIAI 471
                
Sbjct: 2212 FYLT 2215


>gi|257877615|ref|ZP_05657268.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257811781|gb|EEV40601.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 573

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHEL+TP+ +++GF+E +        + ET + ++  I +    
Sbjct: 344 RIRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGA--KEDPETLQTFLEIIQKDAYR 401

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L NLI +I+ LS+ ++  ++  +  I+  +++++ +      A +K +    +  P    
Sbjct: 402 LKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAAKKQLTFQFEG-PEPFI 459

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +   ++ ++ ++ NL+ NAV ++  GG + ++      +     ++D G GI E +   +
Sbjct: 460 LSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQ-LLFQVQDQGIGIDEEDQERI 518

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I +      GG   + S  + G      LP 
Sbjct: 519 FERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLPL 572


>gi|157158585|ref|YP_001462226.1| hybrid sensory histidine kinase TorS [Escherichia coli E24377A]
 gi|332279822|ref|ZP_08392235.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9]
 gi|157080615|gb|ABV20323.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           E24377A]
 gi|332102174|gb|EGJ05520.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9]
          Length = 914

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|160887742|ref|ZP_02068745.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270295689|ref|ZP_06201890.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478675|ref|ZP_07937830.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862773|gb|EDO56204.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270274936|gb|EFA20797.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905186|gb|EFV26985.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 15/284 (5%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           + T++   T     LF     +L  Q EK  L  +          +R  AE    AKS F
Sbjct: 347 IITSILVGTMALVTLFVLLAILLKRQREKVKLSTQK------LATSRINAENAMRAKSVF 400

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           L++MSHE+RTPLNA+ GFS ++  E +   ++ET ++    I ++ + LL LIN+++DLS
Sbjct: 401 LSNMSHEIRTPLNALSGFSSLLTEEGL---DDETRRQCNEVIQQNSELLLKLINDVIDLS 457

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
            +E G+ +   +    + I R  I  +  + ++   E+    +     +  D+  ++QV+
Sbjct: 458 SLEFGKLQFCIAQHDAVSICRNVIDTVN-KVKQTQAELTFTTELEEMPIETDDSRLQQVL 516

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           +NLL NA KFT   G + + +   +      ++ D G GI + +   +   F +      
Sbjct: 517 INLLINATKFTPQ-GSIVLKLEKETDDTVLFTVTDTGCGIPKDKQANIFQRFEKL----N 571

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              QG GLGL I Q I+ + GGQ  I S+  EG       P ++
Sbjct: 572 ENAQGSGLGLSICQLIIEHIGGQIWIDSEYAEGSRFCFTHPISQ 615


>gi|24112406|ref|NP_706916.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|24051280|gb|AAN42623.1| similar to histidine protein kinase/phosphatase, aerobic
           respiration sensor-response protein, sensor for arcA
           [Shigella flexneri 2a str. 301]
 gi|313650753|gb|EFS15154.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2a str. 2457T]
 gi|332759936|gb|EGJ90237.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2747-71]
 gi|332762781|gb|EGJ93044.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-671]
 gi|332767790|gb|EGJ97981.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2930-71]
 gi|333019955|gb|EGK39226.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-304]
          Length = 809

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 236 YSLLLLGMVSLCALIMILWRVVYRSFTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 295

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FL +
Sbjct: 296 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLTA 355

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 356 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLQAITDSGESLLTILNDILDYSAIE 411

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 412 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 471

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 472 TNLLSNALRFTDE-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 528

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 529 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTANQA 581


>gi|212711105|ref|ZP_03319233.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
 gi|212686273|gb|EEB45801.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
          Length = 781

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 119/255 (46%), Gaps = 7/255 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           ++  E  +  K+ F++++SHELRTPLN I+G S ++    +          Y+  IH S 
Sbjct: 273 QEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTKLTK----EQSSYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+++++ +IE  + +L    + L + V +   +  L  Q K ++    +   L
Sbjct: 329 VTLGNIFNDVIEMDKIERRKVQLDNQPVMLPEFVNDLENLSGLLVQPKGLKFVMDVAHGL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              +  D   +RQ++ NL+ NAVKFT   G V +++   +       +KD+G GI + E+
Sbjct: 389 PKTILTDGTRLRQILWNLIGNAVKFTQK-GEVKLSIWREADNKLIFQVKDSGIGIPKDEL 447

Query: 418 PTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q    A      G G+GL +++ +  + GG   + S + +G      +    
Sbjct: 448 DKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIRVESDIGQGSTFTLSIIAPE 507

Query: 477 VLNFIPEDNHESTQY 491
           V   I E   +   Y
Sbjct: 508 VEAEIEEQQQDDDDY 522


>gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1344

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-RKRAEEENLAKS 250
            +    + + T+    LF  +  ++     +   + +   A+ L +   +++ EE +  K 
Sbjct: 771  IRVLPVWYCTWWALSLFALSFMLVVFGIVRYFWLRKSMQAEILMERLDKEKQEEISQMKI 830

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
            RF  ++SHELRTPL  I+   + +     G   +E     +  I R+   LL+L+N+++D
Sbjct: 831  RFYVNISHELRTPLTLIVAPLQELLSRISGHWEHEQ----LLYIQRNTNRLLHLVNQLMD 886

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
              R E G +EL   + +    V    +  +  +++K+I+     +     +  DE  +  
Sbjct: 887  YRRAELGIFELRLVSANAYKRVLNSFMNYESLSKKKDIDYNFYTELQDKELLFDENYLDL 946

Query: 371  VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            ++ NLLSNA K+T  G  + V +   +G    + + D G GI + +   +   F Q    
Sbjct: 947  IVNNLLSNAFKYTEEGESITVKLYQEAGD-LVLQVTDTGIGIPKEKQEKIFERFYQVESG 1005

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
                 +G G+GL + Q ++  H G+  + S+  +G      LP  + +    E
Sbjct: 1006 R----EGSGIGLSLVQRLVELHHGRIELESEPGKGSTFSIYLPQDKSVYSREE 1054


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 126/348 (36%), Gaps = 24/348 (6%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            A    F P         +  +  +  S  G ++  +         L       L   A 
Sbjct: 280 LASLGLFLPGGPWPEASRLARIVPVRWSGDGQVSGVMVLGVSPRRPLDVDYCAFLDMVAS 339

Query: 221 KDDLIAELEVA-KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
               +     A +  +   +  AE  + AK+ F +++SHELRTPL  ILG  E    E  
Sbjct: 340 HTGSVVAHAQAYEQEARRAKALAE-VDHAKTVFFSNISHELRTPLTLILGPLEDALREHG 398

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +     +     IHR+   L  L+N +LD SRIEAGR + S     L     E   M 
Sbjct: 399 GQVPAGQTQ----MIHRNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMF 454

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398
           +   ++  + +     P    V  D     +++LNLLSNA KFT   G + V +      
Sbjct: 455 RSAVEQAGLRLRVDCPPLDGPVHVDRDMYEKIVLNLLSNAFKFTLQ-GEIAVALRDVPDV 513

Query: 399 ----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                         +S+ D G GIA   +P +   F +         +G G+GL + Q +
Sbjct: 514 HDAHGAGGANGAVELSVTDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQEL 573

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVL------NFIPEDNHESTQ 490
              HGG   + S   EG      LP              P   H    
Sbjct: 574 ARLHGGTVTVSSTEGEGSRFTVRLPRGHAHLPAEHRPARPPAAHPQVD 621



 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               +     +E +  K  FLA+++HELR PL  I    ++++    G   +++ +     
Sbjct: 907  ELKQAEHHLKEADRRKDEFLATLAHELRNPLAPISHGLQILKRTASG---DDSVRHSHEM 963

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
            + R   H++ +++++L++SRI  G+ +L +  + L D+++  +       +  + ++  +
Sbjct: 964  LERQVNHMIRMVDDLLEVSRITTGKVQLRKELVDLNDVLQGVVAASGAVMEAGSHQLRLE 1023

Query: 354  IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +  +  S+ AD   + Q++ NLL+NA K++  GG + +   WT G    +S++DNG GI 
Sbjct: 1024 LPAAPVSLLADPMRLAQMVSNLLNNAAKYSHSGGHIVL-AAWTDGAQAVVSVRDNGIGIP 1082

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
               +  V   F Q     +  + G+G+GL + +S++  HGG     S+   +G E    L
Sbjct: 1083 PALLGKVFDLFMQVDRNGRRGQGGLGIGLTLVRSLVEMHGGSVQALSEGKGQGSEFRLYL 1142

Query: 473  --------PNTRVLNFIPEDNH 486
                    P  +  N  PED  
Sbjct: 1143 PLPTQAEPPAGQAPNAQPEDAT 1164


>gi|89107844|ref|AP_001624.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. W3110]
 gi|90111200|ref|NP_415513.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. MG1655]
 gi|157160513|ref|YP_001457831.1| hybrid sensory histidine kinase TorS [Escherichia coli HS]
 gi|170080652|ref|YP_001729972.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. DH10B]
 gi|188493988|ref|ZP_03001258.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           53638]
 gi|238900253|ref|YP_002926049.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BW2952]
 gi|331641526|ref|ZP_08342661.1| TMAO reductase sytem sensor TorS [Escherichia coli H736]
 gi|17380324|sp|P39453|TORS_ECOLI RecName: Full=Sensor protein torS
 gi|85674812|dbj|BAA36135.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K12 substr. W3110]
 gi|87081816|gb|AAC74078.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. MG1655]
 gi|157066193|gb|ABV05448.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           HS]
 gi|169888487|gb|ACB02194.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. DH10B]
 gi|188489187|gb|EDU64290.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           53638]
 gi|238861441|gb|ACR63439.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BW2952]
 gi|309701271|emb|CBJ00571.1| Two-component sensor kinase and response regulator [Escherichia
           coli ETEC H10407]
 gi|323938097|gb|EGB34359.1| TMAO reductase sytem sensor TorS [Escherichia coli E1520]
 gi|323942907|gb|EGB39072.1| TMAO reductase sytem sensor TorS [Escherichia coli E482]
 gi|323962878|gb|EGB58453.1| TMAO reductase sytem sensor TorS [Escherichia coli H489]
 gi|323973132|gb|EGB68324.1| TMAO reductase sytem sensor TorS [Escherichia coli TA007]
 gi|331038324|gb|EGI10544.1| TMAO reductase sytem sensor TorS [Escherichia coli H736]
          Length = 914

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|298206889|ref|YP_003715068.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
 gi|83849523|gb|EAP87391.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
          Length = 813

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K    +++  +EE   ++ + ++++SH+L+TPLN I+G+S++IE   +     E   
Sbjct: 301 ERFKISLKKSKDYSEELLKSREQLISTVSHDLKTPLNTIVGYSDLIENTDL----TEKQL 356

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  I  S  ++  L++++LD S++EAG+  +     SL  I+++ +   +   Q+KN+
Sbjct: 357 YYVNQITNSSLYVTKLVDDLLDFSKLEAGKLHIETIPFSLESIIQQTVETSKDVHQQKNV 416

Query: 349 EIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I   +D ++S     +D   +RQ++ NL+ NA KFT   G V V       + Q   I+
Sbjct: 417 AIHLYVDQAISNQVFESDPLRIRQILSNLIGNAFKFTEE-GSVTVYAKILEQKAQEFEIE 475

Query: 407 ----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
               D G GI++ +   +   F Q          G GLGL I++ +     G   + S  
Sbjct: 476 IKVVDTGIGISKEKQELIFKEFQQAEADTIKRFGGNGLGLAISRKLTNLLHGTLTVDSTP 535

Query: 463 REGVEVIAILPNT 475
            +G     +LP  
Sbjct: 536 NQGSTFTLVLPLK 548


>gi|56461210|ref|YP_156491.1| phosphate regulon sensor histidine kinase [Idiomarina loihiensis
           L2TR]
 gi|56180220|gb|AAV82942.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina loihiensis L2TR]
          Length = 431

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 148/417 (35%), Gaps = 25/417 (5%)

Query: 67  TQNPIFPMWSLITLAVYAANLSL---------GKKVMNSDIKIGEVYVWRIWL-LVGQIA 116
                   W +  LA+                      + +       W      + +  
Sbjct: 24  IGWLFDLFWPVTALALLGLVCWHYYYQQKLIKWLWQSRTLMPPSAPGSWSYIYDGIYRSQ 83

Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176
                    L        E       A ++     + L +  L    F   +P       
Sbjct: 84  RRSQKRRKALARLLRRFREAAEALPDAAIVFRADGALLWSNKLAQFYFGLRWPDDAGQRL 143

Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236
             ++        L                      ++I+    ++  L+A         +
Sbjct: 144 SNLIRHPEFYAYLNAGNFDEELTIPSPIRESLDIEIRIMPYSEDQFLLVARDVTQVKRLE 203

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
             R+           F+A++SHEL+TPL  + G+ E+++     P      K+ + +++ 
Sbjct: 204 NLRR----------EFVANVSHELKTPLTVLQGYLEMMDEPQQTP--PAMLKKAVENMNA 251

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
               + NL++++L LSR+E    ++ +  + +  ++ +     +   + K  +I   + P
Sbjct: 252 QSTRMANLVDQLLTLSRMETPSNDVFDHEVDMPALLEQLESEAKRLNEVKQHKIEFDVAP 311

Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416
               ++  E  +R  + NL++NA+ +T  GG + VT    +G     S+KDNG GIA   
Sbjct: 312 --VRIYGKENLLRSAMQNLITNAINYTPDGGEIKVTWKTVAGG-VEFSVKDNGKGIAAEH 368

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +P +   F +      SA  G GLGL I +  + +H  Q  I S L +G      +P
Sbjct: 369 LPRLTERFYRVEDDRNSASGGTGLGLSIVKHAIEHHNSQLDINSSLEKGSRFSFRIP 425


>gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1361

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 104/240 (43%), Gaps = 11/240 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ F A++SHE RTPL  ILG +  +     G    E  +E +  I R+   L  L+N +
Sbjct: 336 KTTFFANISHEFRTPLTLILGPAAELREALAGAG--ERVREEVDVIQRNALRLGRLVNNL 393

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD SRIEAGR +     + L     E   + +   +   +       PS   V  D    
Sbjct: 394 LDFSRIEAGRMQARFEPVDLGTFTAELASVFRAAVERAGLAFDVDCRPSDEPVHVDRGMW 453

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +V+ NLLSNAVKFT   G + VT          I++ D G GI   E+P +   F +  
Sbjct: 454 EKVVFNLLSNAVKFTFD-GAIRVT-SAVEAGHAVIAVSDTGIGIDAAELPRLFERFHRIP 511

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481
            A   + +G G+GL + + ++  HGG   + S    G             LP   V+   
Sbjct: 512 SARARSNEGSGIGLALVRELVGMHGGSVAVESTPGAGTTFRVRVPLGTRHLPAEHVVEEA 571


>gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134]
 gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134]
          Length = 1386

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 11/226 (4%)

Query: 251  RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             FLA+MSHE+RTPLN ++GF +++   ++    NE+ KEY+  +H+S   LL++I +ILD
Sbjct: 885  EFLANMSHEIRTPLNGVIGFVDLLLETSL----NESQKEYLKTVHQSAHTLLDIITDILD 940

Query: 311  LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369
             S+IEAG+ E+S +   L+ ++ + + +++    +K +E+   +   L   ++AD+   +
Sbjct: 941  FSKIEAGKMEISITQTDLMHLINQVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFK 1000

Query: 370  QVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            Q++ NL+SNAVKFT   G V + V        +      S+KD G GIA  +   VL +F
Sbjct: 1001 QILTNLMSNAVKFTEA-GEVVLKVELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAF 1059

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             Q   +      G GLGL I   ++     +  ++S   EG     
Sbjct: 1060 SQEDASTTRKFGGTGLGLTITNKLLKLMESRLKLKSVPGEGSIFYF 1105


>gi|300920962|ref|ZP_07137352.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1]
 gi|300412082|gb|EFJ95392.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1]
          Length = 904

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|254721310|ref|ZP_05183100.1| sensor histidine kinase [Bacillus anthracis str. A1055]
          Length = 357

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 143/350 (40%), Gaps = 16/350 (4%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188
              T   + ++   T++ + +    S+           F   +++     I  + V  + 
Sbjct: 13  LKVTGAIIALFSFLTIIWSTAFYVSSSILDALAIHLSPFVTYLISDILSFIFMILVWILI 72

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDETRKRAE 243
              M     +    I   + K      S +   ++     +   ++    ++DE      
Sbjct: 73  AVLMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I      L  
Sbjct: 129 AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++     + A
Sbjct: 186 LSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--VHITA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGSGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|254161106|ref|YP_003044214.1| hybrid sensory histidine kinase TorS [Escherichia coli B str.
           REL606]
 gi|242376807|emb|CAQ31520.1| TorS monomer, subunit of TorS sensory histidine kinase [Escherichia
           coli BL21(DE3)]
 gi|253973007|gb|ACT38678.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli B str. REL606]
 gi|253977221|gb|ACT42891.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BL21(DE3)]
          Length = 914

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|148657916|ref|YP_001278121.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
 gi|148570026|gb|ABQ92171.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 392

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 28/394 (7%)

Query: 106 WRIWLLVGQIAIGLCWT-----LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160
           W I  LV  + + + W      +     P     +  +    A          L +    
Sbjct: 3   WIIATLVIALGLSIVWGWRQRQIALQSPPPPPQHDSFSPLFHAAAHAFDDGVVLVDADRR 62

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
                     ++ LS    +   ++ ++    +   +                +   +  
Sbjct: 63  VRYINRQAEELLNLSHTISIGQGLITLARDYQVDAMVEEAIASAEPRESIFQPLGRQRTL 122

Query: 221 KDDLIAELEVAKSLSDETRK--RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           +   I   + A+      R   +      A+   +A++SHELRTPL ++    E ++ + 
Sbjct: 123 RLRAIPLDDGARGALLLVRDVTQLSLLERARRDLVANVSHELRTPLASMKLLVETLQSDP 182

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                    K  +  I +    +  L+ E+ +L++IE+GR  L      L  +V   I  
Sbjct: 183 ----PPPVAKRMLDQIAQEVDAITQLVEELHELAQIESGRVALQLVPAPLAPLVARTIER 238

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-- 396
           ++ +   K++++   +   L     D   + QV+LNLL NA KFT  GG V +       
Sbjct: 239 IRPQMDRKHLQMTTDVPDDLPQALIDCNRVGQVLLNLLHNASKFTPEGGCVSIAARVITV 298

Query: 397 ---------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
                           G+   +S+ DNG GI   ++  +   F +   A      G GLG
Sbjct: 299 GDGSPPPPGLPPSHAPGQWLLLSVTDNGIGIPATDLSRIFERFYKVDRARTRNAGGTGLG 358

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L IA+ ++  HGG+    S   EG      LP  
Sbjct: 359 LAIAKHLVEGHGGRIWATSIEGEGSTFYLTLPVA 392


>gi|28869106|ref|NP_791725.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852346|gb|AAO55420.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 745

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 147/331 (44%), Gaps = 11/331 (3%)

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
            S +    LP  V          +      S               L      ++ ++K 
Sbjct: 419 ASGVLAMSLPKPVDNGVIWFRPEVKQSVQWSGDPNKPLNLDASDNTLRLQPRTSFEIWKV 478

Query: 211 NVKILSCQAEKDDLIAELEVAKSLS--DETRK--RAEEENLAKSRFLASMSHELRTPLNA 266
            +  ++ +    D+ A  ++ +S    D  R+  + ++   A+   +A +SH+LR P+  
Sbjct: 479 EMTGIATKWSHGDVFAANDLRRSALENDLARQVSKEQQAVRARDELVAVVSHDLRNPMTV 538

Query: 267 ILGFSEVIELE--TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           I     +++    + GP  +      I  + ++   +  L+ ++LD S+IEAGRY ++  
Sbjct: 539 ISMLCGMMQKSFSSDGPHTSRRISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQ 598

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + +  I  E   +L   A +K+IEI    +P +  V AD + + QV+ NL+ NA+KFT 
Sbjct: 599 PLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDI-KVNADPERLFQVLSNLIGNAIKFTP 657

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GR+ V    ++G     +++D+G GI   ++P +   +        +   G GLGL I
Sbjct: 658 KLGRIGV-AAMSNGDEVVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPT---GTGLGLYI 713

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +Q I+  HGG+   +S++  G E    +P  
Sbjct: 714 SQGIIKAHGGELAAQSQVGHGSEFRFTVPIA 744


>gi|324117144|gb|EGC11052.1| TMAO reductase sytem sensor TorS [Escherichia coli E1167]
          Length = 914

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|309795016|ref|ZP_07689436.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7]
 gi|308121320|gb|EFO58582.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7]
          Length = 904

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
          Length = 1037

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ + A++     ++ AE+   +KS FLA MSHE+RTP+N I+G  +   L       +
Sbjct: 490 ISQQKQAENALIAAKEEAEQAARSKSEFLAVMSHEIRTPMNGIIGMLD--LLLENNLNTS 547

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++++ Y+   H S   LL L+N+ILD S+I+A + EL     +L  ++ +    +     
Sbjct: 548 QSHQAYLA--HTSALSLLGLLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLT 605

Query: 345 EKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402
             N+EI   +     S + AD   +RQ+  NL+SNA+KFT  G   + V +         
Sbjct: 606 NPNVEIILDMVQVEHSMILADSTRIRQIFSNLVSNALKFTEQGEVVITVRLEENDENTWQ 665

Query: 403 I--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
           +  SIKD+G GI +  + ++   F Q   +      G GLGL I + +     G   + S
Sbjct: 666 LNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSS 725

Query: 461 KLREGVEVIAIL 472
           +  +G E    +
Sbjct: 726 EAGKGSEFSFHI 737


>gi|254693343|ref|ZP_05155171.1| sensor histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 609

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/473 (21%), Positives = 186/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 101 AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 160

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 161 GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 217

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 218 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 277

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 278 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 337

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E    L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 338 HELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 398 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 457

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 458 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 517

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 518 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 570


>gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 488

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 140/308 (45%), Gaps = 18/308 (5%)

Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC----QAEKDDLIAELEVAKSLSD 236
              +    + G L  A      ++  L     ++            DL A LEV +    
Sbjct: 176 MGWLTVAGIGGALMLAFFHARGMSRPLKNLAQEMRRVGRGEFTRSLDLRAPLEVVELAET 235

Query: 237 -----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                E   R EE    K+ F A +SHELRTPL AI     ++  E  GPL++ + KE +
Sbjct: 236 FNWMTEQLARLEEL---KADFTAHVSHELRTPLTAIREGIALLLEEIPGPLSS-SQKEIL 291

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             +  +G+ L   I+ ILDLSR+E    E   +   L  ++ + +  L   A++KNI + 
Sbjct: 292 EVVRGNGERLFVSISSILDLSRMEGEMMEYQYAPCDLQTLIEKSVQGLDPIARKKNIGVE 351

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIK 406
                +L  +  DE  MRQVI NL+SNA+KFT  GGR+ +T          GR   + + 
Sbjct: 352 TIRTGNLPLLMLDESRMRQVIDNLMSNALKFTPEGGRISITTVLKRDDREKGRVVEVRVS 411

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI E ++  V   F +         QG GLGL IA+ I+  HGG+    ++   G 
Sbjct: 412 DTGHGIPEEDVEKVFGRFYRSPHHRGKRHQGTGLGLAIARHIVTAHGGRIWAENEPASGA 471

Query: 467 EVIAILPN 474
            ++  LP 
Sbjct: 472 TIVFTLPA 479


>gi|266620607|ref|ZP_06113542.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288867785|gb|EFD00084.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 365

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 142/381 (37%), Gaps = 27/381 (7%)

Query: 99  KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158
              E              + L + L  L+   T        Y  A L++  S   +  + 
Sbjct: 5   HSTEDGRVTRRYFFFPAYVALVFLLAVLMMLPT------IFYGGAHLILEESGPYIKWYF 58

Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218
           L   V  +     +AL         +  +S A        F  YI      +++  +   
Sbjct: 59  LYCIVLAALVSGGLALRKYLNFDRPIKKLSAAARQVAEGDFSVYIPKRHTSNDMDYI--- 115

Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
              D L  +                     K+ F A++SHEL+TPL AI  +++++    
Sbjct: 116 ---DALFVDFNKMVEELG-------SIETLKNDFAANVSHELKTPLAAIQNYAQLLGTTE 165

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
           + P      +EY   I  S Q L +LI  IL L+++E+ +         L   + +C I 
Sbjct: 166 LTP----KQQEYTERILSSTQRLTSLIYNILKLNKLESQKIHPKPEPYDLCRQLSDCAIG 221

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +   ++K I     ++   + + ADE+ M  V  NLLSNA KFT  GG V +   ++  
Sbjct: 222 FEAIWEQKKINFEADME-DRAVIEADEELMELVWNNLLSNAFKFTKSGGTVSLR-QFSDE 279

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                 + D G G+    +  +   F QG  +     +G GLGL +   ++   GG   +
Sbjct: 280 ERIVTEVGDTGCGMTPEMMKHMFDKFYQGDTSHS--TEGNGLGLALVLRVLEMSGGTITV 337

Query: 459 RSKLREGVEVIAILPNTRVLN 479
            S   +G      LP   +  
Sbjct: 338 NSTEGKGTVFTVSLPRAALAQ 358


>gi|257059382|ref|YP_003137270.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|256589548|gb|ACV00435.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 389

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 12/269 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSD---ETR----KRAEEENLAKSRFLASMSHELRTPL 264
           V+ +    E+  +  +L  A    +   E R     +A+E N  KS F++ +SH+ R P+
Sbjct: 119 VRSICYAIERKQMAEKLRQANQTLEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPM 178

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N IL  + ++E      L  E    Y   I  + + +  L++EIL L + +AG+ +    
Sbjct: 179 NTILLSAGLLEDSG-DQLTREQQISYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFE 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L ++    +  LQL A   N EI  +     S    DEK +R +I NLL+NA+K++ 
Sbjct: 238 ELDLEELCHRLLHSLQLSAH-HNHEIIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSP 296

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V+  +           ++D G GI+      +   F +      +   G GLGL I
Sbjct: 297 EGGKVNFDL-IEKENEVIFRVQDQGIGISPEAQKQLFQPFYRADNV--NNIPGTGLGLAI 353

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q  +  H G  L+ S+   G     ILP
Sbjct: 354 VQKCVEAHYGTILVDSQEGIGTTFTVILP 382


>gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 778

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|303241128|ref|ZP_07327637.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302591388|gb|EFL61127.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 517

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 10/272 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVI---EL 276
           +  I E+ +  ++ +  +   E  E +  K+ F  ++SHE RTPLN IL   +V+   E 
Sbjct: 218 ERKITEVALKNTMEENKKLLNEVIEYDRLKTEFFTNISHEFRTPLNVILSVVQVLSIHEK 277

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
           +    +N E    Y+ ++ ++   LL LIN I+D++RI++G  +L      ++ I+ + +
Sbjct: 278 KGEDTVNIEKINRYMKNVRQNCFRLLKLINNIIDVNRIDSGFLKLQLRNEDIVRIINQIV 337

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             ++       ++I    +     +  D   + +++LNL+SN++KFT  GG + + V + 
Sbjct: 338 SSVKEFVSVNQLKITFSSNVKQKVMAFDVDKVERLMLNLISNSIKFTKPGGEIFINV-YD 396

Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456
            G    IS++D G GI + ++P +   F Q +  +    +G G+GL + +S++  H G  
Sbjct: 397 LGDLVNISVRDTGIGIEKDKLPIIFARFRQVNSTLVKDSEGSGIGLSLVKSLVEMHNGDI 456

Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
            + S+   G E I   P       + ++ +ES
Sbjct: 457 RVISEPGIGTEFIISFPAK----ILSDEENES 484


>gi|262171514|ref|ZP_06039192.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
 gi|261892590|gb|EEY38576.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
          Length = 573

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + +S    K++L   +E+        +K AE+ N +KS FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAISDIEHKEELQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  ++          E +  +  S + LL +IN+ILDLSRIE+G + L    
Sbjct: 227 AVLGLIDILRSDSTSY-----QVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTA 384
           I L   + + ++  +  AQ+K ++   + + +     + D   + Q++ N++ NA+KFT 
Sbjct: 282 IDLEKKLDQSLVYHRQIAQDKGVQFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTK 341

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV + + +       I ++D G GI    I  + T F Q   +I     G GLGL I
Sbjct: 342 Q-GRVDIQLNYIEDG-IDIQVQDTGIGIEPKRIEQLFTPFIQADNSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + ++   GG   + SK+  G      +P 
Sbjct: 400 TKHLVELMGGTINVDSKIDIGTLFTLRIPL 429


>gi|196228932|ref|ZP_03127798.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227213|gb|EDY21717.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 958

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 4/280 (1%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
           +++       +  ++       Q   D    +L    S     R  AE  N AK  FLA 
Sbjct: 538 SVAELRARVRNQLQTKRARDVLQRTLDTRSQDLAAMVSELARARSVAESANSAKDSFLAV 597

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           +SHELRTPL   L  +  +      P + E  +E++  I R+ +    L++++LD++RI 
Sbjct: 598 LSHELRTPLTPALAATSALISAP--PSDPEVLREFLAVIRRNIELEARLVDDLLDVTRIN 655

Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375
             +  +  + + L  I+R+ + M     +EK I     +     ++  D   + QV  NL
Sbjct: 656 RDKLRIQPTTVDLHSILRDALSMAAPVLREKEIATVADLMAEGPAIHGDAARLAQVFSNL 715

Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           L+NA KFT   G+V +      G    + +KD G GI+   +P +   F QG  A     
Sbjct: 716 LTNAAKFTPESGQVTLRSEVV-GSMVRVMVKDTGIGISGEVLPHIFEPFRQGEAAKARRF 774

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
            G+GLGL IA+ ++  HGG     S    +G      LP 
Sbjct: 775 GGLGLGLSIAKGLVEAHGGTIRAYSDGPGQGAVFTVELPV 814



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 27/358 (7%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           GL W ++   +   +    +          A     L     P+ ++             
Sbjct: 56  GLIWLVVRARKELPFHWIMIAFAIFIVACGATHFMELWTLTAPHPMY------------- 102

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             ++  V  I+    + TA+     I   L     ++L+      +   +L+ A +  + 
Sbjct: 103 -WLAGWVKLITAVASVTTAVVLPPLIPRVL-----EMLTAARRSAEHGDKLQRAYAELNF 156

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              R ++ +  K+ F A++SHELRTPL  I G  E +  E      +E  +  +  + R+
Sbjct: 157 AHARVKQLDQLKTNFFANVSHELRTPLALIFGPIERLLAEIR----DEGARRELAVVRRN 212

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L   +N++LD+S++E G+ EL  S + +  + R    M +    E+ I +  K    
Sbjct: 213 ALLLHKYVNDLLDVSKLEVGKMELHYSRLDVATMARTVAGMFESMVSERGIAVAVKATGE 272

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
            +    D   +++V +NLLSNA K+   G  V +T+         ++++D GPG+     
Sbjct: 273 -AMAEVDGDKLQRVFMNLLSNAFKYAPDGSTVRLTLT-GDDDHLTLTVEDAGPGVPVDLR 330

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEVIAILPN 474
             +   F QG    +    G GLGL I +  +  H G  +   S L  G      LP 
Sbjct: 331 KEIFERFQQGDRETQRRYGGTGLGLSIVKEFVEMHRGSIVAGESSLG-GALFRVQLPR 387


>gi|317496927|ref|ZP_07955257.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895939|gb|EFV18091.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1040

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 18/281 (6%)

Query: 228 LEVAKSLSDETRKRA-----EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
               +   +  R +A        + AK+ FL+ MSH++RTPLN I+G   ++ +      
Sbjct: 636 QRHKQEELEHARLQAAFDEMRTASQAKTDFLSRMSHDIRTPLNGIIG---LLNINEKHFD 692

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
           + +   E    +  + +HLL+LIN++L +S+IE G+  L+   I++  ++RE   M++ R
Sbjct: 693 DQKLVLENHKKMETAAKHLLSLINDVLQMSKIEEGQITLAHQEIAVKKLMREVETMIRER 752

Query: 343 AQEKNIEIFQK---IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             E  I    +   ID   S V+A    +RQ++LN+  N +K+   GG +   +      
Sbjct: 753 VLEAGIRWNYEEDNIDDRYSYVYASPLHLRQILLNIYGNCIKYNHPGGTISTKMEQMDVH 812

Query: 400 GQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
            +      +IKD G GI++  I  +   F Q     +S  QG GLG+ I + ++    G+
Sbjct: 813 DKICTYRWTIKDTGIGISKDYIDHIFEPFSQEKTDARSVYQGTGLGMSIVKGLIEQMHGE 872

Query: 456 FLIRSKLREGVEVIAILPNT---RVLNFIPEDNHESTQYKC 493
             + S+   G   +  +P     +    + E   E    + 
Sbjct: 873 IKVISEKGMGSTFVITIPFEIAQKKEQPVAEKIVEQADIRG 913


>gi|323526815|ref|YP_004228968.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1001]
 gi|323383817|gb|ADX55908.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1001]
          Length = 437

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 158/445 (35%), Gaps = 26/445 (5%)

Query: 47  RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
           R    + L  +L   +G +        +  ++ L          +++             
Sbjct: 7   RSIVSIVLLAILCVVVGAFVNVKAALILAVVMLLVQSLVGTFHKERLWRLLDAP------ 60

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPG----TWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                    A G+ W  +                    + +  + A+  S     ML   
Sbjct: 61  --VYGEVPSAPGI-WGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGVAML--D 115

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                            +            L     F  Y+  H ++  + +     ++ 
Sbjct: 116 DHDQIEWCNAISEVHFGLDAKRDLRQHITHLVRQPDFVRYLNSHQYEEMLIMRGMGEKRQ 175

Query: 223 DLIA-----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           ++++       E  K +  +     E  +  +  F+A++SHEL+TPL  + GF E +   
Sbjct: 176 NVLSVQVFPYGENRKLVLSQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL 235

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              PL       Y+  + +    + +++N++L L+++E      S+  I +  ++R    
Sbjct: 236 ---PLAEAERTRYLDLMEQQASRMRHIVNDLLVLAKLEGDNKPPSDQMIDMRAVLRHLRD 292

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             +  + + +  I  + D SL +V   E  +     NL++NA+++T  GG + V+   T 
Sbjct: 293 DAESLSSDHH-TITFEADESL-TVTGVETEILSAFGNLVTNAIRYTPDGGTIKVS-WLTQ 349

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G     ++ D+G GI   +IP +   F +   +      G GLGL I + ++  H  Q  
Sbjct: 350 GGAAVFAVTDSGLGIPAADIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLD 409

Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482
           ++S+   G       P  R     P
Sbjct: 410 VKSEEGRGSTFSVRFPLYRTARRQP 434


>gi|149909787|ref|ZP_01898438.1| sensor protein TorS [Moritella sp. PE36]
 gi|149807119|gb|EDM67075.1| sensor protein TorS [Moritella sp. PE36]
          Length = 970

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 146/284 (51%), Gaps = 13/284 (4%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRT 262
            L K N++ L  Q   + L    E   + S    + +++AE+ N AKS FLA+MSHE+RT
Sbjct: 425 RLHKENLERLVKQ-RTEQLTLINEKLNNESVGHAKAKQQAEDANNAKSVFLANMSHEIRT 483

Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322
           P+N +LG  E++    +              I  SG++LL+++N+ILD S+IEAG  E+S
Sbjct: 484 PMNGMLGTLELLSDTPLSTQQQTYT----QTILTSGENLLDILNDILDYSKIEAGHIEVS 539

Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381
             A++L  +    I +++ RA+ K + +   +   L   V AD   +RQ+I+NL++NA+K
Sbjct: 540 NRAVNLQRLGNNVIDLMRARAESKGLNLTFNLADKLDIWVLADLGKLRQIIINLVNNAIK 599

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   G V + +  T       SI D G GIA+ +   V  +F Q +    S+  G GLG
Sbjct: 600 FT-TSGSVTLAIA-THDEQLSFSITDTGCGIADDKQKAVFDAFTQVANL--SSATGTGLG 655

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
           L I+Q +++   G   + S   +G      +P       + ++ 
Sbjct: 656 LAISQRLVSAIQGTLSLTSIENQGSCFYFKIPLQVAPQALIDEQ 699


>gi|167621591|ref|YP_001672099.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351714|gb|ABZ74440.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 903

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FLA+MSHELRTPL +I+GF+ +   ++      +  + Y+  +  + + LL  +N+I
Sbjct: 523 KAEFLANMSHELRTPLTSIIGFTSLAAEQS---DLTDLTRTYVERVGDASRALLCTVNDI 579

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEK 366
           LD S++EAG+        SL  + R  + +   +A  K++ +    +       +  D  
Sbjct: 580 LDFSKLEAGQVSFQVQPASLAKLSRATLDLFTPQAGAKDLNLTLDGEAADDDLIIAVDPD 639

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFG 425
            +RQ++LNL+ NAVKFT  GG V +   +        + + D G G+A  +   +   F 
Sbjct: 640 RIRQILLNLVGNAVKFT-TGGSVTLRTRYDRAAEVLSVDVIDTGEGVAPDKQDRLFKRFS 698

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           Q   ++   + G GLGL I + ++   GG+  + S++ EG      +P 
Sbjct: 699 QVDGSLTRVQGGTGLGLAICKGLVEAMGGEIGVESRMGEGSRFWFKVPA 747


>gi|312134120|ref|YP_004001458.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311774171|gb|ADQ03658.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 566

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 20/238 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  + +F+A +SHELRTP+  I  +SE +        +    +E++G I +    +  L
Sbjct: 339 LDRMRKQFVADVSHELRTPITTIKTYSETLLD----VDDEAVKREFLGVIIKECDRMTRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++L LSR+++G   L    +++ +++R     +++ A++KN ++      ++  + AD
Sbjct: 395 ISDLLYLSRLDSGENILKIEEVNVSELIRFVCEKMRIHAKKKNQKLLCSAKENVV-IEAD 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NL++NAV +   GG++ V +         I++KDNGPGI E ++P +   F
Sbjct: 454 RDRLEQVLINLINNAVVYVQEGGQIEVGLEKDEEH-VKITVKDNGPGIPEDDLPRIFERF 512

Query: 425 GQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +   A                    IA  I+  HGG+  + S++  G +   ILP  
Sbjct: 513 YRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKIQVESRVGVGTKFTVILPVK 563


>gi|261213592|ref|ZP_05927873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
 gi|260915199|gb|EEX82060.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
          Length = 532

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/473 (21%), Positives = 186/473 (39%), Gaps = 19/473 (4%)

Query: 31  MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90
             +   + T+   S    +  L    L +                      +    +  G
Sbjct: 24  AAYGAGLATIGAFSNGNAALWLMAAGLPLEIWFASRKPGSTIAGSLAAMAILAFLAVKTG 83

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT------LLTLVEPGTWTPEYLTIYKSAT 144
             +    +  G +    +      +  G+          +   +      +         
Sbjct: 84  GTISGGSLISGAI---LLLYAASLVLRGVAVARKPVQISVAAPQVAVAAGDMQFGLDIEG 140

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           ++ ++         +   +      +        +  + +L    AGM    +       
Sbjct: 141 IVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKVDVRLRSI 200

Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDE-TRKRAEEENLA--KSRFLASMS 257
            +            A  D  I  +    E  + L DE    +AE E+    K R LA++S
Sbjct: 201 ENGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGKGRLLATVS 260

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HELRTPLN+I+GFS+++  E    L ++  +EY G IH+SG +LL L+N +LD SR+E G
Sbjct: 261 HELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAGLIHQSGHYLLELVNAVLDNSRLETG 320

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
            Y ++  +    D V  C  ++  +A++K +    ++   +  + AD + ++Q++LNL +
Sbjct: 321 TYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQQILLNLAT 380

Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           NAVKFT  GG V +        G      S+ D G GI   ++  + T F +   +   A
Sbjct: 381 NAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVRAGNSYTQA 440

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
           ++G GLGL + + ++  H G   ++S+  EG  V+  LP         E+  E
Sbjct: 441 QEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLAGPQYRAGEEQQE 493


>gi|326441348|ref|ZP_08216082.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 694

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 10/303 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           +  ++   +       +  A  L   L   T     +              +++     +
Sbjct: 382 IAGVAAGVLALTVGATVIAATRLVRPLRALTGAAQRMKDGERTEPVPVTTDNEV---GRL 438

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A + +D    RA      +   ++ ++HELRTPL+ I G+ E  +     P        +
Sbjct: 439 AAAFNDMAAHRA-RLEAQRRAMVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAA-----F 492

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +      L ++I+++ DL+  +AG   L    +   +++ +     Q RA E   ++
Sbjct: 493 VDSLLEEAVQLQHIIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDL 552

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             ++   +  + AD   +RQ + NLLSNAV+ T  GG V +      G    I + D G 
Sbjct: 553 RVEVPHPVPVLSADPVRLRQAVGNLLSNAVRHTPRGGSVTLRAA-VRGERLAIEVADTGQ 611

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  ++P V   F +   +      G GLGL I + +   HGG   + S+   G     
Sbjct: 612 GIAAEDLPYVFDRFWRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTL 671

Query: 471 ILP 473
           +LP
Sbjct: 672 LLP 674


>gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 778

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTNLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|331652019|ref|ZP_08353038.1| TMAO reductase sytem sensor TorS [Escherichia coli M718]
 gi|331050297|gb|EGI22355.1| TMAO reductase sytem sensor TorS [Escherichia coli M718]
          Length = 914

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRTLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDK-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTANQA 676


>gi|323976120|gb|EGB71213.1| phosphate regulon sensor kinase PhoR [Escherichia coli TW10509]
          Length = 431

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNDL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLHIESTVGKGTRFSFVIP 422


>gi|237799056|ref|ZP_04587517.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021910|gb|EGI01967.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 719

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +  HL +    + +   E       L  +       R  A +   A++ FLA MSHE+R
Sbjct: 245 RLNDHLNELENIVSARTDELKASNLRLRESNEELQIARSTALDMAHARAAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + +  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGALIEDTANLLSQNAAPSVELTCLIEPDFPAMITGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +   +          I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHADATLGDNRIRIEVRDTGIGIAQDAQARIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G+  I S    G +  A LP 
Sbjct: 480 GTGLGLALTHNLCEAMNGKLSIHSLPGFGSQFSAELPL 517


>gi|77463472|ref|YP_352976.1| two-component sensor histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77387890|gb|ABA79075.1| Probable two-component sensor histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 346

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A+LGF E ++       +      ++G + R    + 
Sbjct: 110 EQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAGRMN 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E+      ++ + +  ++ + I  L+  A+   +EI ++ +     + 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGE 416
            D   + QV  NL+ NAVK+ A G  V V +   +           I + D G GI    
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDAEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P +   F +        + G GLGL I + I+  H G+FLI S+L +G   I  LP  
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLPLA 346


>gi|55981692|ref|YP_144989.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55773105|dbj|BAD71546.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 373

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 11/282 (3%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           LA         +  + +    +     E+D+L         L++      E+    ++  
Sbjct: 95  LARTARLLAEGSRRMAEGEYGVRLPLLERDELGELALHFNRLAE----ALEKVEKTRAEL 150

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           + +++HELRTPL A+ G++E +    +         +    I R  + +  L+ ++  +S
Sbjct: 151 IGTVAHELRTPLAALQGYAEGLIDGVLSKE------KAAEGILREVKAMRRLVEDLSLVS 204

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R+EA   E+    +    ++ E +   Q   Q K + +  +    L  VWADE+ + QV+
Sbjct: 205 RVEAKAVEIRPRPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVWADEERVLQVL 264

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLL+NA++ T  GG V +      G      + D GPGI E  +P +   F +   A  
Sbjct: 265 ANLLTNALRHTPQGGEVRLRAFRQ-GEAVAFQVADTGPGIPEEHLPHIFERFYRVDKARS 323

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             E G G+GL +A+ ++   GG+  + S++ EG      LP 
Sbjct: 324 RKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLPL 365


>gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
          Length = 596

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 6/230 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  F+A++SHE++TPL  I G  E +    +     E+ + ++  I    + L  L+ +I
Sbjct: 368 RRDFVANVSHEIKTPLTVIRGAVETLRDGAI--HEPESAERFMQIIEMHSERLNALVQDI 425

Query: 309 LDLSRIE--AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366
           L LS++E  A     +   +++   +   + + Q RA    +++  +       V  D +
Sbjct: 426 LSLSQLECRAVGDGYNMVPVNVSTPISTAVELAQARADAAGLKLVVETSAD-PEVLIDVQ 484

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            + Q ILNL+ NA+K +     V +T          I + D+G GI    +P V   F +
Sbjct: 485 LVEQAILNLIDNAIKHSGEKSEVRITA-REESGEAVIEVADHGCGIPAEHLPRVFERFYR 543

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              A      G GLGL I + +M  H G   + S + +G      LP  R
Sbjct: 544 VDKARSRKAGGTGLGLAIVKHVMQLHHGSAEVHSTVGQGSTFTLRLPVCR 593


>gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 510

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 3/227 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              ++ F+A+ SHELRTPL ++ GF E ++       +    + ++  +    + +  LI
Sbjct: 272 EQMRADFVANASHELRTPLASLSGFIETLQ--GPARNDAPARERFLAIMAAQARRMSRLI 329

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +++L LSRIE   +   ++ + L  I+      L   A+++ + + Q  D     V  D 
Sbjct: 330 DDLLSLSRIELNAHVRPQTKVDLGGILAHVCDTLSPLARDRGVTLDQVKDAVPLEVLGDR 389

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + ++  NL+ NA+K+ A G R+ V +         +SI+D GPGI    +P +   F 
Sbjct: 390 DELIRLFENLVENALKYGAPGKRIEVRLFR-ENGTAVVSIRDFGPGIPPEHLPRLTERFY 448

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +  +A    + G GLGL I + I+A H G+  I S L EG      L
Sbjct: 449 RVDVAASRDQGGTGLGLAIVKHIVARHRGRLGIDSVLGEGATFSVRL 495


>gi|329769298|ref|ZP_08260714.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
 gi|328839101|gb|EGF88686.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
          Length = 615

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 5/225 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL  +  + E +E   +   + E   ++I  IH+    ++ ++NE++ L
Sbjct: 388 FVSTVSHELRTPLTTMNSYIEALEEGVI--NDKELAPQFIDTIHKETTRMIRMVNELMQL 445

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
            +++       +  I +  ++ +     +L   EKN    + I  +   V  D+  + QV
Sbjct: 446 GKMDIKEEHYDKEFIDINKLIEQISDRFELTHPEKN--FIKYIPKTPIFVEGDQDKLTQV 503

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
             N+++NA+K++  G  + + V       +  ISIKD G GI    I  +   F +   +
Sbjct: 504 FDNIINNAIKYSPNGKNITIRVRQNYNHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKS 563

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +    G GLGL +A++I+  H G+   +S+   G  +   LP  
Sbjct: 564 RQRTMGGTGLGLALAKNIVEAHRGRIWAQSREGYGSIIFVTLPCE 608


>gi|321314046|ref|YP_004206333.1| two-component sensor histidine kinase YclJ [Bacillus subtilis BSn5]
 gi|320020320|gb|ADV95306.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis
           BSn5]
          Length = 472

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 15/338 (4%)

Query: 140 YKSATLLIALSISA--LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197
           +K A LLI+       + N +  Y  +     +V+ +    ++S   +        AT  
Sbjct: 142 FKGAVLLISPISGVEQMVNQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDK 201

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   HL  S         E   L ++  +      ++R   E     + +F+A +S
Sbjct: 202 VASGDYDIHLENS------YGDEIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVS 255

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HEL+TPL  I G  E +       +  +   +    I    + +L L+ E LD  +I + 
Sbjct: 256 HELKTPLTTINGLVEGLNSH---TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQ 312

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377
           +  L++  + LI++       LQ +A+EK  ++  +++     V AD     Q+++N+  
Sbjct: 313 QITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQVE-DHVIVHADYDRFIQILVNITK 371

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQ 436
           N+++FT   G + +  G    +   I I+D G GI + +I  +   F +  I+   +A  
Sbjct: 372 NSIQFT-QNGDIWLR-GMEGYKETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYG 429

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             GLGL I + ++  H G   I+S+  +G + I  LP 
Sbjct: 430 EYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLPL 467


>gi|323702184|ref|ZP_08113851.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532871|gb|EGB22743.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 479

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 6/255 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L+A L       +   +   E + A+ RF+A +SHELRTPL  I G   +I    M
Sbjct: 220 ELGRLVATLNDMLDSLESAYRELAESHAAQKRFVADVSHELRTPLTTIRGNIALIRK--M 277

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G    +  +E + DI    + +  L++++L L+R +AG   L     ++  ++ +     
Sbjct: 278 GDAEPQIREEALADIASEAERMSRLVSDMLVLARADAG-LTLQLQPTAVQPLIEQIKRQA 336

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +L A++ N ++  +     + + AD   +RQ+IL LL NA KFTA  G V + V    G 
Sbjct: 337 KLLAKDINFQVHMETACEKTLIMADPDYLRQLILILLDNAFKFTAANGTVELAVKC-GGD 395

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              +++KD G GI+  E+  +   F +   +      G GLGL IA+ I A H  Q  + 
Sbjct: 396 QVEVAVKDTGMGISPAELEHIFERFYRSDKS--RPVGGTGLGLSIARWIAAQHKSQITVE 453

Query: 460 SKLREGVEVIAILPN 474
           S + +G      LP 
Sbjct: 454 STVGQGSVFKVTLPV 468


>gi|300902839|ref|ZP_07120787.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1]
 gi|301302388|ref|ZP_07208519.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1]
 gi|300405106|gb|EFJ88644.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1]
 gi|300842227|gb|EFK69987.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1]
 gi|315258041|gb|EFU38009.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 85-1]
          Length = 904

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|291550847|emb|CBL27109.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 457

 Score =  245 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 145/304 (47%), Gaps = 7/304 (2%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           L TQ  + + ++ I L  +   A        + +  +   + +  ++    +      KS
Sbjct: 153 LYTQGSVIIGLVMIFLTIVAVFAADRVVRPLHQIAATIENVSAGYSDDVLHVDTFTETKS 212

Query: 234 LSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           +S+   K   R +  + ++  F++++SHEL+TP+ ++   ++ +  +    L  E Y+E+
Sbjct: 213 ISEAINKMMGRLKLLDDSREEFVSNVSHELKTPMTSMKVLADSLLEQE--NLPVEMYQEF 270

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +GDI +       +I ++L L +++     L+  +I++ +++ + +  L+  A++KN+EI
Sbjct: 271 MGDIAKEIDRENKIITDLLSLVKMDKKGQTLNIESININELLEQILKRLKPIAEKKNVEI 330

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +      +   DE  +   I NL+ NAVK+    G VHV++     +  Y+ ++D+G 
Sbjct: 331 VME-SFRPVTAEIDETKLSLAISNLVENAVKYNHDNGWVHVSLNA-DHKFFYVKVEDSGI 388

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + +   V   F +   +      G GLGL IA++ +  H G   + S+  EG     
Sbjct: 389 GIPKEDQAHVFERFFRVDKSHSREIGGTGLGLAIARNAVIAHRGAIKVFSEEGEGTTFTV 448

Query: 471 ILPN 474
            +P 
Sbjct: 449 RIPL 452


>gi|254389790|ref|ZP_05005014.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197703501|gb|EDY49313.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 478

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 10/303 (3%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           +  ++   +       +  A  L   L   T     +              +++     +
Sbjct: 166 IAGVAAGVLALTVGATVIAATRLVRPLRALTGAAQRMKDGERTEPVPVTTDNEV---GRL 222

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           A + +D    RA      +   ++ ++HELRTPL+ I G+ E  +     P        +
Sbjct: 223 AAAFNDMAAHRA-RLEAQRRAMVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAA-----F 276

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +      L ++I+++ DL+  +AG   L    +   +++ +     Q RA E   ++
Sbjct: 277 VDSLLEEAVQLQHIIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDL 336

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             ++   +  + AD   +RQ + NLLSNAV+ T  GG V +      G    I + D G 
Sbjct: 337 RVEVPHPVPVLSADPVRLRQAVGNLLSNAVRHTPRGGSVTLRAA-VRGERLAIEVADTGQ 395

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIA  ++P V   F +   +      G GLGL I + +   HGG   + S+   G     
Sbjct: 396 GIAAEDLPYVFDRFWRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTL 455

Query: 471 ILP 473
           +LP
Sbjct: 456 LLP 458


>gi|167764826|ref|ZP_02436947.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
 gi|167697495|gb|EDS14074.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
          Length = 1329

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 14/319 (4%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             S  V  + +  +     +++ ++ + LF   +     +        + E+     D  R
Sbjct: 747  WSGEVEALHIRVLPVWYRTWWAFLIFALFFILLVFAVFRFFWLRKSMQTEIRMERLD--R 804

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            ++ EE +  K RF  ++SHELRTPL  I+   + +     G       +E +  I R+ +
Sbjct: 805  EKKEEISQMKIRFYVNISHELRTPLTLIISPLQELLSSVTGHWE----REKLLYIQRNAR 860

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             LL+L+N+++D  R E G +EL  S  +    V    +  +  A++K+I+     +    
Sbjct: 861  RLLHLVNQLMDYRRAELGIFELRPSYANAYKRVLNSFLNYESLAKKKDIDYNFYSELQDE 920

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
             V  D   +  +I NLLSNA K+T  G R++V +     +   + + D G GI + +   
Sbjct: 921  DVLFDGTYLDLIINNLLSNAFKYTEEGERIYVKLYR-EDKNVVLQVADTGVGIPKDKQRK 979

Query: 420  VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL- 478
            +   F Q         +G G+GL + Q ++  H GQ  + S++ +G      +P  + + 
Sbjct: 980  IFERFYQVEN----VHEGSGIGLSLVQRLVELHHGQITLVSEVGKGSTFSIYIPQDKSVY 1035

Query: 479  --NFIPEDNHESTQYKCYA 495
                + E   E  + + Y+
Sbjct: 1036 TAEELAESKGEMEEQRVYS 1054


>gi|319781057|ref|YP_004140533.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166945|gb|ADV10483.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 589

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 176/457 (38%), Gaps = 15/457 (3%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTW--FTQNPIFPMWSLITLAVYAANLSLGKKV 93
               + +        ++   V+ +A +              W      + A  +   ++ 
Sbjct: 7   RQALVELLYRNSYGVVISNIVISMAAVYVLRTAVSANWLTGWLAALYLLTAIRVLASRRF 66

Query: 94  MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153
            +     G +  W           GL W +L  V      P  L+ +    L   +  + 
Sbjct: 67  FSRSRDRGSILHWAWLATAFSCMSGLLWGVLGWVGFMPEAPIVLS-FTVIVLTGLVCGTV 125

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
            S    P A+  S    VV ++ + + +   +  +   +LA+ ++   Y     ++   +
Sbjct: 126 PSLSAFPPALVGSILATVVPVALRCLTTQSDISGAFLFLLASLVAINFYYCRITYRMLRE 185

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +S + E + L+           E R RA+  + AK+RFLA+ SH+LR P++A+      
Sbjct: 186 TVSLRLENETLVEH-------LQEERDRAQTADRAKTRFLAAASHDLRQPIHALSLLVST 238

Query: 274 IE-LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +  L   G + +   ++          +   L+N +LD+SR++AG   ++  A+ L D+ 
Sbjct: 239 LAILGQRGDVTSGEARDLASRAKSVVSNFSGLLNALLDISRLDAGIVTVTSEAVPLRDLF 298

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
            +        A+++ +        S   V +D   +++++ NL+SNA+++T  GG V + 
Sbjct: 299 GDLRNEFAAEAKQRGLTWRVV--DSSLYVDSDPMMLKRILNNLVSNALRYTKQGG-VLLG 355

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
                G    I + D+GPGI   +   V   F Q     +   QG+GLGL I +      
Sbjct: 356 CRRR-GACVEIQVLDSGPGIPADQQGMVFEEFVQLQNPARDRTQGLGLGLAIVRRTAELL 414

Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           G    + S    G      +     +    E +  S 
Sbjct: 415 GHPLKLASTSGRGSLFSITVAKAGAVQARLEVDTTSP 451


>gi|307728423|ref|YP_003905647.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307582958|gb|ADN56356.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1488

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 190  AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI--------AELEVAKSL-SDETRK 240
            A +    L  F        K     L  + E D  +        A +E A++      R 
Sbjct: 780  ARLETPLLIEFRMGPEQALKWTRAELVPRREADGSVVWSGYWVDASIEHARAEELARARD 839

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             AE  + AK  F A MSHE+RTP+N +LG  EV+E   +    N    E +G IH S   
Sbjct: 840  VAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NADQGEMLGMIHESAGA 895

Query: 301  LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359
            LL +++++LD S+IEAGR  +    I L ++V   + +L  RA EK +++   I P ++ 
Sbjct: 896  LLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAA 955

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGE 416
            ++  D   +RQV+ NLL NA+KFT  G             + +   + ++D G GIA   
Sbjct: 956  TLRGDSVRLRQVLFNLLGNAIKFTPEGKVEVSVSVVEHTDAQQTIEMVVEDTGIGIAADV 1015

Query: 417  IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               +   F Q   +      G GLGL I + ++    G   + S+L  G  +   L
Sbjct: 1016 QAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLTLDSELGRGTRMTVRL 1071


>gi|260494920|ref|ZP_05815049.1| sensor histidine kinase [Fusobacterium sp. 3_1_33]
 gi|260197363|gb|EEW94881.1| sensor histidine kinase [Fusobacterium sp. 3_1_33]
          Length = 623

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    +L  ++         +++ AE  N AK+ FLA +SHE+RTPL  I+G+S ++ 
Sbjct: 127 ELKELNKNLEDKVVERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRILL 186

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            E     + E     +  IH SG  LLN  NE+LD S+IE+G+ +L+    ++  + ++ 
Sbjct: 187 KEINDVSSKEK----LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDI 242

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
                  A+ KNI        +  S+++D+  + ++  N++ NA+K+T  G    V    
Sbjct: 243 YHEHIDLAKMKNINFKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG---FVLCDI 299

Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                  + ++ D+G G++E  I  +  SF Q        + G GLGL I + ++    G
Sbjct: 300 FVEKNTLFFNVYDSGIGMSEENIKNIFESFVQIGN----EQSGAGLGLSITKKLLEVLNG 355

Query: 455 QFLIRSKLREGVEVIAILPNT 475
           +  + SK+  G      +P  
Sbjct: 356 KIEVESKVGMGSTFKIQIPIE 376


>gi|209774098|gb|ACI85361.1| sensor protein torS [Escherichia coli]
 gi|320642985|gb|EFX12186.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str.
           493-89]
 gi|320648443|gb|EFX17098.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str.
           H 2687]
          Length = 904

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|17230375|ref|NP_486923.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17131977|dbj|BAB74582.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1131

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E  +   +   K A+  + N  K  FLA +SHEL+TPL A+LG S ++  + +G L NE 
Sbjct: 397 EQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NER 455

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--- 343
              Y G IH+SG+HL++++N+ILDL+R+E G+ EL+   +S+  +    +   +      
Sbjct: 456 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQT 515

Query: 344 ---------QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                    ++   E    ++  L  + ADE  +RQ++++LLSNA KFT I G + + V 
Sbjct: 516 SKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVS 575

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
                    ++ D G GI E +   +   F Q    +    +G GLGL + +++   HGG
Sbjct: 576 HW-EGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGG 634

Query: 455 QFLIRSKLREGVEVI 469
                S+  +G +  
Sbjct: 635 DVSFLSREGKGSQFT 649


>gi|332653990|ref|ZP_08419734.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
 gi|332517076|gb|EGJ46681.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
          Length = 484

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 166/484 (34%), Gaps = 24/484 (4%)

Query: 17  SPTGDHLGLEYPSKMDFDREI-----ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71
                      P     D  +     +      L     +  L   +       + +N  
Sbjct: 5   RQRFHSPPPTAPISTARDTSLAFRLNLGFFFRQLCIFVVLDLLLAGMALCGLILYGENRC 64

Query: 72  FPMWSL----ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL--LT 125
             + +L          A           + +                I       L    
Sbjct: 65  ADVAALVEERGVPTQDALAWMEASDYTITLLDGEPTGYPVPVFAWLPIREETADGLRLWD 124

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           L           T   + T+ +      L    +   VF   F +         +   + 
Sbjct: 125 LSRYYQIQMPSETTPYAITVNLTGIFQTLYWAGVVVLVFQGIFLLTSLFGNNRSIRKVLR 184

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILS-----CQAEKDDLIAELEVAKSLSDETRK 240
            +      A+ LS  T+++    ++    L          + DL A  +  +SL+     
Sbjct: 185 PLQELAATASRLSSMTHMSRQELEALAGELEKINAKHLDSRIDLPATQKELRSLAQSINA 244

Query: 241 RAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
             E  N A   ++RF++  SHELRTP+  I G++ ++  +  G  + +  +E I  I   
Sbjct: 245 MLERINRAYSAQARFVSDASHELRTPIAVIQGYAALL--DRWGKDDPDALQESISAIRSE 302

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + +  L+ ++L L+R +     +  S   L  +  E +   +      +     +    
Sbjct: 303 AKSMEELVEQLLFLARGDNDTQPVKPSLFDLSALAGEVLR--EEEMICPDRVFLPRWGEE 360

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD+  ++QV+  L+ NA+K++  G R+++ +  T  R   ++++D G GI+   I
Sbjct: 361 PVPVRADQGLIKQVMRILMDNAIKYSPPGSRIYLRLS-TQERYARLTVQDEGDGISPESI 419

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           P +   F +   +      G GLGL IA+ I+  H G F + S+   G  +  +LP    
Sbjct: 420 PHIFERFYRTDQSRDRKTGGTGLGLSIARWIVERHEGWFEVVSRPGVGTRISFLLPLAPP 479

Query: 478 LNFI 481
               
Sbjct: 480 EQEA 483


>gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 554

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 8/239 (3%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RK  E     K  F+   SHELR PL A+   ++++    +   ++      +  +   
Sbjct: 322 ARKELE---QRKDDFINMASHELRNPLAALKMQTQLVRKR-LEKQSHHEAATALSRVEGP 377

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            + L  LI E+LD+S+I+AG+ E  +  + L  ++ E    +Q  +    + +      +
Sbjct: 378 VKQLERLIGELLDVSKIQAGKLEYLQEPVDLEALLHEVADTMQQISTTHAVVVR---GAA 434

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             ++  D+  + QV  NL+SNA+K++     V + +  +      I + D+GPGI   + 
Sbjct: 435 PCTLIGDKGRLEQVFTNLISNAIKYSPDAKTVEIDLDASPE-MVTIRVHDHGPGIPREQR 493

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   F + +   + A  G+G+GL I   I+  HGG   + S++ +G      LP  R
Sbjct: 494 DKIFERFYRVADPNQKAIPGLGMGLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLPRKR 552


>gi|149925352|ref|ZP_01913616.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
           MED105]
 gi|149825469|gb|EDM84677.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
           MED105]
          Length = 752

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296
           + RKR E  +  KS+FLA+MSHE+RTPLNAILGF+ ++  +   P +    KEY+  +  
Sbjct: 369 QQRKR-ESASKEKSQFLANMSHEIRTPLNAILGFNSLLGDQVRDPQS----KEYVKQVRE 423

Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356
           + + LL ++ ++L  S+IEAG  ++      L + VR  + +   +AQ K +++  +ID 
Sbjct: 424 ASEQLLGMVEDVLSFSQIEAGSIKIESVEFDLHERVRRTLRLFTAKAQHKGLDLELEIDA 483

Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412
                V  D     QV+ NLL+NA+KF+  G  RV V       +G  I   + D G G 
Sbjct: 484 MTPLLVNGDPARYGQVLSNLLNNAIKFSDSGVVRVKVQADRLDTQGAVIRTEVHDQGIGF 543

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              E   +   F Q          G GLGL I + +    GG+  + S  + G      L
Sbjct: 544 DVSEFERLTRPFEQADNTATRRFGGSGLGLAICKRLTELMGGELFVASVPQAGSVFGFTL 603


>gi|328542033|ref|YP_004302142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326411783|gb|ADZ68846.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 1140

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 164/366 (44%), Gaps = 12/366 (3%)

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +L                 ++TL IA    AL       AV+      VV  +   I   
Sbjct: 559 VLPAPVLARLRTRLGRYLVTSTLAIAAIGLALLVIYHQAAVYRPDDSGVVGQTVALIF-- 616

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
                  A +   A  F          +  +     A     I       +   + ++ A
Sbjct: 617 ----FVFAILAGIAAWFLVLAHDTRHVAEEESARQTALLLKEIEAHRRTDAALQKAKEAA 672

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  NLAKSR++  +SHELRTPLNA+LG+++V+E +   P      K  I  I RS +HL 
Sbjct: 673 EAANLAKSRYVVGLSHELRTPLNAVLGYAQVLERDEAIPR---ERKASINVIRRSAEHLS 729

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
            LI+ +LD+SRIEAGR ++  + I++ D + + + M +L+AQ K +        +L   V
Sbjct: 730 GLIDGLLDISRIEAGRLQVYSNEINIHDFLDQIVAMFRLQAQAKGLGFSFARADNLPAVV 789

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             DEK +RQ+++NLLSNA+KFT   G + + VG+   +     + D G GIA  ++P + 
Sbjct: 790 RTDEKRLRQILVNLLSNALKFTDT-GAIGLEVGYR-SQVATFRVTDTGRGIAPVDLPRIF 847

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
            +FG+G         G+GLGL I + +    GG   + S    G      L    V +  
Sbjct: 848 EAFGRGEEDRLKKTPGLGLGLTITKLLAETLGGAIRVDSAPGCGSTFEVRLMLAAVADPK 907

Query: 482 PEDNHE 487
           P    E
Sbjct: 908 PAAALE 913


>gi|323174897|gb|EFZ60512.1| TMAO reductase sytem sensor TorS [Escherichia coli LT-68]
          Length = 904

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|325104528|ref|YP_004274182.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324973376|gb|ADY52360.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 675

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 10/249 (4%)

Query: 230 VAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            A    D  E  +  +  NL K  F+A  SHEL+TPL +I G+ +++        + E  
Sbjct: 431 QAAIALDNSELFEEIKSLNLKKDEFIALASHELKTPLTSIKGYLQILSR---STHDKEMS 487

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
             ++         L +L++++L++S+IEAG+ + +   + L  +V E I      ++   
Sbjct: 488 DLFVNKALIQVGKLESLVSDLLNVSKIEAGKLQFNIEILDLRQLVLESIENFSYTSRSHK 547

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I +     P    +  D++ + QVI+NLLSNAVK++    +V V +  +      +SIKD
Sbjct: 548 INLDDIKSP--VIIEGDKQRLEQVIINLLSNAVKYSPKSDKVDVFLS-SDENNAIVSIKD 604

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G++      + T F +      S   G+GLGL + + I+  H G+  + S+L +G E
Sbjct: 605 TGLGLSNESQKNIFTRFYRAEGV--SNISGLGLGLYLTKEIVERHHGKIEVESELGQGAE 662

Query: 468 VIAILPNTR 476
               LP  R
Sbjct: 663 FTFTLPLFR 671


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 5/250 (2%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            + I E + A+    +   R +E N  KSRF++  SHE RTPL  IL  +E+++       
Sbjct: 972  EDITEYKQAEQEIRQALAREQELNELKSRFISMTSHEFRTPLTTILSSTELLK-YYSSKF 1030

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
              E  + +   I  +  H+  ++N+IL L + EAG+ + + + + +    ++ +   Q +
Sbjct: 1031 TEEKKQIHFERIQSNVHHITQMLNDILLLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQ-Q 1089

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
                   +       L+ V  DEK +R ++ NLLSNA+K++ I   V + +         
Sbjct: 1090 GIGHRHSLCFTHQGQLTPVSLDEKLLRHILGNLLSNALKYSPIDRPVCLELTCRH-NELI 1148

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
              IKD G GI+E +   +  SF +G+        G GLGL I +  +  HGG   + SKL
Sbjct: 1149 FRIKDQGIGISETDQQRLFESFHRGTNVGN--ISGTGLGLSIVKKAVDRHGGTINLESKL 1206

Query: 463  REGVEVIAIL 472
              G     ++
Sbjct: 1207 GVGTTFTVVI 1216


>gi|165919047|ref|ZP_02219133.1| putative sensor protein gacS [Coxiella burnetii RSA 334]
 gi|165917242|gb|EDR35846.1| putative sensor protein gacS [Coxiella burnetii RSA 334]
          Length = 808

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPL 282
           I EL+  ++  +  R++AE  N AKS F+A+MSH++RTP+  +LG  + +    E     
Sbjct: 246 ITELKKTQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTS 305

Query: 283 NNETYKEYIGDIHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
           +N +    I  + R       +   LL L NEIL++ R+E+G+      A  L ++++  
Sbjct: 306 SNASILNVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRT 365

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           I +LQ  A +K + +  ++D  +   +      + + +LNL+SNA+KFT   G V V V 
Sbjct: 366 IELLQPVAHQKKLTLACEVDEGVPQYLDGIRMYLSRTLLNLISNALKFT-ENGFVKVKVR 424

Query: 395 WTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            +                I+++D G GI   +  T+   F + + + +   +G GLGL  
Sbjct: 425 LSDKTNSHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYT 484

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +  +   GG+  + S++ +G     I+P
Sbjct: 485 VKRYVDAMGGEITVDSEVGKGTCFNVIIP 513


>gi|323157492|gb|EFZ43602.1| TMAO reductase sytem sensor TorS [Escherichia coli EPECa14]
          Length = 904

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|239628829|ref|ZP_04671860.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518975|gb|EEQ58841.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 468

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 12/306 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELE 229
            L   + +   +  I L     T       IT    +     L  +      D++    +
Sbjct: 169 ILYITSAIVFALSLIILLVFTQTVYLPLRKITVGANEYAAGNLEYRINVKTHDEVGYLAD 228

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
               +SDE  K  E     +  F+A++SH+ R+PL +I G+ E I     G +  + Y++
Sbjct: 229 TLNYMSDELNKMEE----YQKNFIANVSHDFRSPLTSIKGYLEAILD---GTIPEDMYEK 281

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  +    + L  L   +L L+ ++A  Y LS +   +  ++++     +     KNI 
Sbjct: 282 YLSRVISETKRLHKLTESMLTLNSLDAKGY-LSRTNFDINRVIKDTAASFEGTCDAKNIS 340

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
                  S+  V+AD   ++QV+ NL+ NA+KF+     +++       +  ++S+KD G
Sbjct: 341 FDLTFSDSIQMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASGRYEK-IFVSVKDTG 399

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +     +   F +  ++    ++G GLGL I + I+ +HG    + S    G E I
Sbjct: 400 IGIPKDSQKKIWERFYKTDLSRGKDKKGTGLGLSIVKEIVQSHGENIDVVSTEGVGTEFI 459

Query: 470 AILPNT 475
             LP +
Sbjct: 460 FSLPRS 465


>gi|261418665|ref|YP_003252347.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319765480|ref|YP_004130981.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261375122|gb|ACX77865.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317110346|gb|ADU92838.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 457

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 133/329 (40%), Gaps = 29/329 (8%)

Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
           A +       +    +    F  ++ +         V    L  ++  A+ F        
Sbjct: 156 AAARDWRVLAVAHPLIIHGDFAGMLYIGMDVTSFFGVFHWLLIVLIGLAVLFLAVGV--- 212

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
                  LS    K  LI                 EE    + +F+A  SHELRTPL+ +
Sbjct: 213 ------ALSYFMSKRALIPI---------------EEAYERQRQFVADASHELRTPLSVV 251

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR--YELSESA 325
               E + LE    + N+  +  +  +    + +  LI ++L L+R++A     ELS+  
Sbjct: 252 FSSVEALALEE-DVMKNDFARRLLDRLREELKRITKLIGDLLTLARVDAKHAALELSKQT 310

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
                       ++   A +K I +     P  + V AD   + Q++  LL NA+K+T  
Sbjct: 311 FDFRPHAERTFQLVSELAAKKQITMHFH-APEQAIVTADPDKLTQLLYILLDNAIKYTPE 369

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V +++     +   +S+KD G GI   +I  +   F +        + G GLGL IA
Sbjct: 370 GGDVTLSIRTEPKQFI-LSVKDTGIGIPPEDIGRIFDRFYRVDKTRSRQQGGHGLGLSIA 428

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474
           + I+  HGG   ++S+L +G E +  LP 
Sbjct: 429 KWIVDAHGGAIHVQSQLGQGSEFLVRLPV 457


>gi|229096517|ref|ZP_04227488.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
 gi|228686723|gb|EEL40630.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
          Length = 392

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 25/307 (8%)

Query: 184 VLDISLAGMLATALSFFTY--ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----E 237
           +++I +  +    +       I+  L  S V+ +    +    IAE  +   + +    E
Sbjct: 95  IIEIIMFTIAVGIVISCIVFSISRRLANSFVEPIESIIQASSQIAEGTLKNKIKEDYPGE 154

Query: 238 TRKRA----------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
             + A          E+    K+ F+AS+SHE+RTPL  I G+SE ++  T+  L  E  
Sbjct: 155 LGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK--TVEHLTEEEI 212

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           K+ +G I      L++L+ E+LD SR+++  + L +  + L DI+ E I  L   A++K 
Sbjct: 213 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 272

Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
           I+    I+     +  D   ++Q+ LN++ NA+K++   G V++      G+   I +KD
Sbjct: 273 IQFINTIE--RIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQ-AVIKVKD 329

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GIA+  +P +  SF Q +        G GLGL I + ++  H G   I SK   G  
Sbjct: 330 EGIGIAKEHLPYIEQSFYQINNHAA----GAGLGLAIVKKMVELHRGTLSIVSKEGIGTT 385

Query: 468 VIAILPN 474
           ++  LP 
Sbjct: 386 ILIKLPL 392


>gi|255533794|ref|YP_003094166.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346778|gb|ACU06104.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1337

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E    K  F++  SHEL+TP+ +I GF ++ +        +     YI   +R  ++L  
Sbjct: 1109 ELMEKKDEFMSIASHELKTPITSIKGFLQLTKRAAAKGTADRDMLIYIDKANRQLENLTF 1168

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+N++LD+S+I+AG+ + + S  ++  ++ EC+  +Q     +  EI  K    +  ++A
Sbjct: 1169 LVNDLLDVSKIQAGKMQFNYSEFNIRKLIAECVDDMQ---NTEGYEISLKHTDDI-DIYA 1224

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D+  + QVI N LSNA+K++     V V      G+   + ++D G GIA  +   V   
Sbjct: 1225 DQHRIEQVIKNFLSNAIKYSPDNKVVIVYTKLM-GKEIRVCVQDFGIGIAPDKAKLVFDR 1283

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            F +    +     G+GLGL I   I+  HGG   ++S+  +G E    +P   
Sbjct: 1284 FFRVDH-VNYQFSGLGLGLYICAEIVTRHGGTIGVQSEEGKGSEFWFQIPLKP 1335


>gi|218694528|ref|YP_002402195.1| hybrid sensory histidine kinase TorS [Escherichia coli 55989]
 gi|218351260|emb|CAU96964.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli 55989]
          Length = 914

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPTLN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +  ++  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|150389093|ref|YP_001319142.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948955|gb|ABR47483.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 471

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 157/349 (44%), Gaps = 14/349 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           L + + I +   +   Y V ++    +  L    +    +   +   +     + F    
Sbjct: 115 LFLFIIIISTLQYGKKYGVNIALLSSLFILVVDLLSMSSLESNTYFQIDIVLSAVFLLTA 174

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           + L            +      E EVA+           E +  K+ F  ++SHEL+TP+
Sbjct: 175 WLLGDYVHIEKDYAQKMILYFNEREVAEKELV----ATLELDKIKNEFFGNISHELKTPV 230

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N I G  +++  +      N    +Y+  + ++   L+ L+N ++D +++++G Y+L+  
Sbjct: 231 NVIFGTVQLL--DVQAKEGNVCNDKYLKIMKQNCYRLIRLVNNLVDTTKLDSGFYDLNLQ 288

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            ++++++V    + +    + K + +    D     +  D + + +++LNLLSNAVKFT 
Sbjct: 289 NVNVVNVVESITLSVAQYVEGKGLTLEFDTDVEEKVLACDSEKIERIMLNLLSNAVKFTD 348

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
           IGG++ V +    G    IS+KD G GI+  ++  +   F Q   ++    +G G+GL +
Sbjct: 349 IGGKIIVNMT-DKGSHIIISVKDTGIGISPKDLKVIFQRFKQVDKSLTRNSEGSGIGLSL 407

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493
            +S++  HGG+    S+L +G   I  LP   V       + E   YK 
Sbjct: 408 VKSLVEMHGGRVYTESQLGKGSNFIIELPVKMV-------DTEENNYKG 449


>gi|298247521|ref|ZP_06971326.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297550180|gb|EFH84046.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 532

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 130/312 (41%), Gaps = 21/312 (6%)

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKIL----SCQAEKDDLIAELEVAKSLSDE--TR 239
              LA      +   T     +   ++         Q E   L        +  D    R
Sbjct: 221 SYLLACKAFQPIGRLTSAARTIAVGDLTQRVPVPRAQDEVQRLALTFNEMLASLDAMFAR 280

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +R         RF A  +HELRTP+ AI   +EV   E   P   E Y   + +I    +
Sbjct: 281 QR---------RFTADAAHELRTPVAAIRSLAEVALSERSEP---EMYMHVLQNITSESE 328

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  LI ++L L+R + G+       + L  + +  +  ++  AQE+ + +  +    + 
Sbjct: 329 RLGELIRDLLVLARADEGQASFEHEPVRLDLLAQGAVATMEHLAQERAVHLSVQAREQV- 387

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V  DE  + QV+LNL+ NA+ +T  GG V V  G    R   + ++D G GIA   +P 
Sbjct: 388 QVMGDEARLIQVVLNLVENALVYTNPGGNVTVETGIEQER-AILRVRDTGIGIAHEHLPH 446

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           V   F +   A   A  G GLGL I + I+  HGG   ++S+  +G      LP  R L 
Sbjct: 447 VFERFYRTDKARSRAAGGTGLGLSIVEWIIHTHGGTIDVQSQPEQGSLFSISLPLAR-LP 505

Query: 480 FIPEDNHESTQY 491
              E   ++ +Y
Sbjct: 506 GASEGEGDTAKY 517


>gi|227537041|ref|ZP_03967090.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243133|gb|EEI93148.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 437

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FL+  SHEL+TPL +I  + +++E       ++ T K Y+  +      L +LI ++
Sbjct: 214 KDEFLSIASHELKTPLTSIKAYIQLLERTLNAEHSSSTSK-YLNTVQNQVSKLNSLIADL 272

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+I+ G+ ++++   +  +++   +  +    +  NI I ++ D     V  DE  +
Sbjct: 273 LDISKIDNGKLKMNKKLFNFENLLSNVVDTIYHTHENSNIRIEREGDAIDQPVLGDEIRI 332

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++N L+NA+K++    RV +     + +   + + D G GI E +   +   F +  
Sbjct: 333 EQVLINYLTNAIKYSPDSKRVIIKTEQENTQ-IKVDVTDFGIGIPEHKQKNIFNKFYRVE 391

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     QG+G+GL I   I+  H G F I+S+  +G      +P 
Sbjct: 392 ES-SLKFQGLGIGLYICSEIIRQHNGTFGIQSQTGQGSTFYFTIPL 436


>gi|206977479|ref|ZP_03238374.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217959464|ref|YP_002338016.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|206744329|gb|EDZ55741.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217066231|gb|ACJ80481.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 357

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 147/354 (41%), Gaps = 16/354 (4%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
               +  +         +  Y S++++ AL I          +  + F  +V+      +
Sbjct: 15  VIGAVLALFSFLTIIWSIAFYVSSSVINALEIRVSPFVTFLISDMVGFVFIVLIWVLIGV 74

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
           +     +  +  ++                 +VKI + +    ++   ++    ++DE  
Sbjct: 75  LMRPKREAMIWTIIEPIQKIAK------GDFSVKIRNEEKYNGEIGVLVKSINDMTDELN 128

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +   + E  + Y+  I     
Sbjct: 129 ----AMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNL---SEEKREHYLTIIETETT 181

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 182 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 239

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQH 298

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 299 IFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 352


>gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 139/332 (41%), Gaps = 13/332 (3%)

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
            F +           +++     +  + VL    +  ++T L   +   + +   +    
Sbjct: 138 AFPVGNLNRRPLLLGMLSAGAGLMAVLLVLAAIFSRQISTPLRQISAAAHAIADGDHSSR 197

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
              A   +L         +++      ++ +  + +  A ++HELRTPL+ I G  E I+
Sbjct: 198 VQTANVRELADLSASFNRMAE----ALQQADQQRRQLTADIAHELRTPLSIIKGRLEGIQ 253

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                    E   E I  +      L  LIN++  L+  +AG+  L    +S   +V E 
Sbjct: 254 DGVY-----EADAEQIEALLTEVALLERLINDLHLLALADAGQLPLYREVVSPQMLVNEA 308

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           I      A E+N+ +   ID +L  +  D + + QV+ NL+ NA++ T  GG V V+   
Sbjct: 309 IRSFTPAANERNVRLSATIDDNLPDIEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHR 368

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                    ++D G GI   ++P +   F +   A   +  G GLGL IA+ ++  HGGQ
Sbjct: 369 DESG-IRFEVRDTGAGIDPADLPYIFDRFYKADRARSRSSGGAGLGLAIARRLVEAHGGQ 427

Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487
               S L++G  V   LP   V    PE  ++
Sbjct: 428 IWATSALQQGTTVSFRLP---VSPTAPEPANQ 456


>gi|332203074|gb|EGJ17142.1| sensory box protein [Streptococcus pneumoniae GA47901]
          Length = 449

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K+++ GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSSDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|306842434|ref|ZP_07475085.1| histidine kinase [Brucella sp. BO2]
 gi|306287290|gb|EFM58770.1| histidine kinase [Brucella sp. BO2]
          Length = 438

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 148/386 (38%), Gaps = 24/386 (6%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML---PYA 162
           W   +L+  + +G  W    +        +     +        ++S      L   P  
Sbjct: 47  WFRAILLALVVLGAVWAAAGI----GNGEDEKVPLREVVSREMAAVSGERLADLLTDPMI 102

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
           VF     V  A +        + + ++  +   A      I   +     + +       
Sbjct: 103 VFDHTATVRFANAAALEAFQSLQNGTVLYLRFRAPEMLALIQGVIADGEPRNIEYFERVP 162

Query: 223 DLIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGF 270
                  + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF
Sbjct: 163 IDRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGF 222

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E ++       +      ++  + +  + +  LI+++L LSR+E   +     ++ +  
Sbjct: 223 IETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAA 280

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
            +      L   A    + I + +      V      + QV  NL+ NA K+   G RV 
Sbjct: 281 TLAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVI 340

Query: 391 VTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           + +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + 
Sbjct: 341 IRLSEEDTASATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKH 400

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
           I+A H G+ ++RS+L EG   +  LP
Sbjct: 401 ILARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|260890603|ref|ZP_05901866.1| sensory transduction histidine kinase [Leptotrichia hofstadii
           F0254]
 gi|260859648|gb|EEX74148.1| sensory transduction histidine kinase [Leptotrichia hofstadii
           F0254]
          Length = 534

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 127/276 (46%), Gaps = 6/276 (2%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           LS + E      EL+    + +E   R E     +++F++  SHELRTPL  I G++E+I
Sbjct: 233 LSKRIEIPKEEDELQNLTLIINEMLDRLETSFENQTKFVSDASHELRTPLAIIKGYAEII 292

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                G  + + + E I  I     ++ NLI ++L L++ E  +       I   ++V +
Sbjct: 293 RKR--GTADIDIFVESIDSIISETDNMRNLIQKLLFLAKGEITKINTKFIDIDANEMVHQ 350

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                 +  +  +  +          +  DE  ++Q I  L+ NA K++     +++   
Sbjct: 351 IHSDTVVSTKTHSFHLEM---GENYKIKGDETLLQQAIRALIENAAKYSEPNTNIYIK-S 406

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           +      +ISI+D G GI++ +   +   F +  ++   A  G GLGL I + I+  H G
Sbjct: 407 FIKDGFGWISIQDEGVGISDEDAKRIFDRFYRVDLSRTKATGGTGLGLAIVKRIVEIHNG 466

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +  I SK+ +G E+  +LP       + E+  ++ +
Sbjct: 467 RIEINSKMNKGTEISIVLPIGETDAAVSEETAKNVK 502


>gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 545

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 2/363 (0%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177
           G+  T+   +         ++  ++A  +  +    +    L   + L+           
Sbjct: 173 GILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLD 232

Query: 178 AIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                 +  ++   A     A      +   +  S V+           + E   A++  
Sbjct: 233 FAPGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRRAEAEL 292

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
              +  AE  + AKS F+A MSHELRTPLNA++GFS+++EL+      +      +  I 
Sbjct: 293 LAAKAAAEAGDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIG 352

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           ++G+ LL +I++ILD++R+E+G   LSE  + L  +V  C+  L+ +A  + + +   +D
Sbjct: 353 QAGRRLLAIIDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVALD 412

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             L  +  D + + Q + NLLSNA+KF+  G  V +           +S++D G G+   
Sbjct: 413 GDLPPLRGDWRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGMRPE 472

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +I   L  F Q   A     +GVGLGLP+A+ ++  HGG   + S    G      LP +
Sbjct: 473 DIDRALAPFAQIDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRLPPS 532

Query: 476 RVL 478
           R++
Sbjct: 533 RIM 535


>gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
 gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
          Length = 589

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 173/436 (39%), Gaps = 13/436 (2%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIKIGEV 103
           +     +  LFV  +A I   F       + +    LA          +   +     E 
Sbjct: 159 MSGSVVLRSLFVSAIALIIGLFVHETATRLRARNAALAQLQLEQQTLLEQARAAATELER 218

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYA 162
            V        Q+   +       +     T         A  L+  S  A+     L   
Sbjct: 219 AVTVRRAAYEQLVSVIDSATEQAIIATDATGRIEVFNAGAERLLGYSQGAVVGRLRLVDL 278

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLA---GMLATALSFFTYITYHLFKSNVKILSCQA 219
                       S  A +   ++D  +A   G    A  +          +    ++ + 
Sbjct: 279 HLADEVLARTGESPGADLQDALVDALVAPRRGPAGAATDWTYVRADGSHVTVHPAVTRRT 338

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E D  +A   V  +     R+ A      K +F+  +SHELRTPL ++LG+ E++   T 
Sbjct: 339 EPDGSVAGYVVVATDVTAEREAA----RLKDQFVGLVSHELRTPLTSVLGYVELLLDGT- 393

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +  +EY+G I R+ +  L L++++L  ++++AG + +S + +    + R  +   
Sbjct: 394 -EELTDEQREYLGIIDRNARRQLRLVSDLLLSAQVDAGTFAISPTDVDAAVVARASLASA 452

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A    + +   + P+   + AD   + Q I NL+SNA+KFT  GG V V+V      
Sbjct: 453 APAADAAGVTLAGDLRPAP--LRADPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDG 510

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           G  +++ D G GI   E+  +   F + S A + A  GVGLGL I ++++  HGG   I 
Sbjct: 511 GAVVAVSDTGIGIPPDELANLTERFYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIA 570

Query: 460 SKLREGVEVIAILPNT 475
           S + EG     +LP  
Sbjct: 571 STVGEGTTFTLVLPAR 586


>gi|167567697|ref|ZP_02360613.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           oklahomensis EO147]
          Length = 1138

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++      P  L +   A+L+ A+     S   L ++   +   V       A+    + 
Sbjct: 556 VLPGARLGPAALRLIHYASLVFAMLAVLGSVLYLIWSQSANSMSVAGPSIGHALSGSFLK 615

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEE 244
                 ++    +++  +     +   +    Q E   L I   +   +        AE 
Sbjct: 616 IFFALSLVGCIAAWWFVLERENRRVTQEESQRQNELLMLEIDAHQKTDAALKRATAAAES 675

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+++ +SHELRTPLN+ILG+++++                +  IHRSG+HLL L
Sbjct: 676 ANRAKSRYVSGLSHELRTPLNSILGYTQLLLQ--AREELTPMRYNAVRTIHRSGEHLLAL 733

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ +LD++RIEAG+ +L+ + +SL D V     ML+ +A EK +    +    L  +V  
Sbjct: 734 VDGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRT 793

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K M Q++ NL+ NA++FT+  G + + V           + D GPGI   E+  +   
Sbjct: 794 DQKCMSQILTNLIGNAIRFTSS-GTITLRVSHVLD-TLKFEVIDTGPGIPPAEMERLFLP 851

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G  A      G GLGL I + +    GG   + S++  G   +  L     ++   E
Sbjct: 852 FERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFMVRL-FAPAVDTAAE 909

Query: 484 DNHESTQYKCY 494
            + E    + Y
Sbjct: 910 THAELASIRGY 920


>gi|149184835|ref|ZP_01863153.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
 gi|148832155|gb|EDL50588.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
          Length = 395

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 160/401 (39%), Gaps = 29/401 (7%)

Query: 97  DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL------- 149
                  + W        +AI     L+ L  P       L ++  +  L+         
Sbjct: 2   PEMSERPFPWS----AFALAIATAIGLMALGLPTLPIVLMLLVWAGSLWLVGSTPPPPEQ 57

Query: 150 --SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
               S +S   +      S  PV+V  + + I++       L   +              
Sbjct: 58  EKGKSGISRDTMGDLFEHSEAPVIVTENARVIIANLAARRLLGAHILGQDVRMALRQPEA 117

Query: 208 FKSNVKILSCQAEKDDLIAELEVAK----------SLSDETRKRAEE-ENLAKSRFLASM 256
            +         A    L    ++ +          ++ +   K AE   + A + F+A+ 
Sbjct: 118 VRLLEGNEDGAAVIRGLSRRRDIWRLNHKKLDGGMAIVELVNKTAEADISRAHTDFVANA 177

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHELRTPL++ILG+ E +  +     + +   +++  I R GQ L  LI++++ LSRIEA
Sbjct: 178 SHELRTPLSSILGYVETLREDVND-FDPKMGDKFLATIQREGQRLQQLISDLMSLSRIEA 236

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
            +++L ++ + L  ++      +        +E           V  DE+ + Q++ NL+
Sbjct: 237 EKHDLPDTTLELGALMDRAARDVA----GDRVERLDIEAHGEFHVCGDEQQLEQLVRNLV 292

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+K+ A   +V V +     +   +S++D G GIA   +P +   F +       A  
Sbjct: 293 DNALKYGAADEQVTVRLQPRGDKRVMLSVQDRGGGIAPEHLPHLTRRFYRTDPGRSRASG 352

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           G GLGL I + I+  H G+  I S L EG  +   LP  + 
Sbjct: 353 GTGLGLAIVKHIVERHRGKLAIDSVLGEGTRIKVTLPLAQA 393


>gi|322372854|ref|ZP_08047390.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
 gi|321277896|gb|EFX54965.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
          Length = 446

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++    G LN E    +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDD---GALNEEIAPNFIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPSLSSVWADEK 366
           S I+     L     +    +   +        ++N      EI +    +   V  D  
Sbjct: 268 SHIDNKSTHLDVEMTNFTAFMTYILNRFDQIKSQENNTGKDYEIIRDYPVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV+ N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTQVVDNILNNAIKYSPDGGKITVSMKTTDAQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|312892001|ref|ZP_07751502.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
 gi|311295498|gb|EFQ72666.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
          Length = 1605

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 5/243 (2%)

Query: 234  LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
               + R+  EE    K  FL+  SHEL+TP+ ++ G  ++++          T  +++G 
Sbjct: 1368 ELVKARETTEELMHKKDEFLSIASHELKTPITSLKGSLQILQRIMAREGGKNTVMDFVGK 1427

Query: 294  IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
             +     L  L++++LD+++I+AG+  L+      + +V+E +  ++ +   +    F  
Sbjct: 1428 ANNQTNKLTTLVDDLLDVTKIQAGKLLLNYETFDAVQLVKEVLEEVRAQ---EGTHEFIL 1484

Query: 354  IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                L ++ AD   + QVI N L+NA+K++  G +V +         + ++++D G GI 
Sbjct: 1485 QGEGLITITADRTRLEQVITNFLTNAIKYSPKGDKVILNCSLFENEFK-LTVQDFGIGIP 1543

Query: 414  EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            E +   +   F +   +  +   G+GLGL I+  I+  H GQ  + S + EG      +P
Sbjct: 1544 EAKKDYLFDRFYRVQES-STHFSGLGLGLYISAEIIKRHRGQIGVESAIGEGATFWFTVP 1602

Query: 474  NTR 476
               
Sbjct: 1603 LQP 1605


>gi|126641439|ref|YP_001084423.1| putative two-component sensor kinase [Acinetobacter baumannii ATCC
           17978]
          Length = 1089

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 542 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 601

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 602 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 658

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 659 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 718

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 719 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 776

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 777 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLVDLLGGQLSVTSQLN 829

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 830 QGSQFKIKFYLPSKEVVHPI 849


>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1275

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 27/271 (9%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSR------------------FLASMSHELRTPL 264
           + + E        +  R   EE    ++                   FLA+MSHE+RTP+
Sbjct: 716 EDVTEKRRNADELERHRHHLEELVAERTAELAVAHEAAEAASRAKSAFLANMSHEIRTPM 775

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           NAI+G + ++          +     +G I  S  HLL +IN+ILD+S+IEA +  L +S
Sbjct: 776 NAIVGLTYMLRRTITDSGQADK----LGKIAASADHLLGVINDILDISKIEANKLALDQS 831

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
             +L +++     M+  R +EK +E+    D SL  +  D   + Q ++N L NAVKFT 
Sbjct: 832 EFNLEELLSRVTSMVIDRVREKRLELIIDTDASLGFLMGDATRLGQSLINYLGNAVKFT- 890

Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
             G + +                 ++D G G+A   +P +   F QG         G GL
Sbjct: 891 DYGSIVLRARLVEESSNDVLIRFEVEDTGIGVAPENLPRLFQVFEQGDSTTTRRYGGTGL 950

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           GL I + +    GG+  + S L  G      
Sbjct: 951 GLAITRRLAQLMGGEAGVESTLGVGSTFWLT 981


>gi|329116484|ref|ZP_08245201.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
 gi|326906889|gb|EGE53803.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
          Length = 453

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +      +   +I         ++ +I ++L+L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPS---FIKVSLDETNRMMRMITDLLNL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+     L+    +    +   +        Q     K+ EI +    +   V  D  
Sbjct: 269 SRIDNQATRLTVEMTNFTAFMTSILNRFDLVKNQNTISGKSYEIIRDYPINSIWVEIDND 328

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M QV+ N+L+NA+K++  GG++ V +  T  +   ISI D G GI + ++P +   F +
Sbjct: 329 KMTQVVENILNNAIKYSPDGGKITVKMKTTDNQ-LIISISDQGLGIPKKDLPLIFDRFYR 387

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 VDKARSRAQGGTGLGLSIAKEIIKQHQGFIWAKSEYSKGSTFTIVLP 434


>gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 778

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|73855027|gb|AAZ87734.1| sensor protein torS [Shigella sonnei Ss046]
          Length = 904

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGQLMGAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|86143811|ref|ZP_01062187.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829854|gb|EAQ48316.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 804

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 132/261 (50%), Gaps = 7/261 (2%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
            +  +      +E+   A+    ++ + +A+++H++R+PLN +LGF+++++   +    +
Sbjct: 290 ASRSQQYSRELEESNATAQSLLKSREQLMATITHDMRSPLNTVLGFTDLLKKTAV----D 345

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                Y+  + +SG ++L L+N++LD +++EAG+  + +   +   ++ + I++   +  
Sbjct: 346 AKQMRYLDTVQKSGDYILKLVNDLLDFAKLEAGKISVEKVPFNPKKLIEDVIVVSLPQPL 405

Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +  +E+  +I   L +++ +D   ++Q++ NL++NA KFT   G + V +    G+    
Sbjct: 406 KTGVEVHTEIPDELDTIFLSDPFRIKQILANLITNAYKFTEE-GSITVAL-HKDGKNLRF 463

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            I D G GI + +   +   F Q     +    G GLGL I+Q +     G+  ++S   
Sbjct: 464 KIIDTGCGIPKEKQQLIFKEFSQAEETTQRKYGGFGLGLSISQKLTELLEGKLQLKSIPG 523

Query: 464 EGVEVIAILPNTRVLNFIPED 484
           +G     I+P  +  +  P  
Sbjct: 524 KGSTFTLIVPVEQTEHQEPAA 544


>gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1238

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 142/302 (47%), Gaps = 18/302 (5%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L      +     E ++   E+E A++  ++   +    +  KS FLA+MSHELRTPLN+
Sbjct: 500 LIAKTRALEEQVREVEEKNDEIERARAQLEQQAMQLGITSKYKSEFLANMSHELRTPLNS 559

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +L  S+++     G L      EY   I+ SG  LL +I+EILDLS+++AG+ +++   +
Sbjct: 560 LLILSQLLSENKEGNL-KPKQVEYAQTIYMSGADLLKMIDEILDLSKVDAGKMDINHETV 618

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385
            L ++           A ++ +++  +I+ +L  ++ +D   ++Q++ NLLSNA KFT  
Sbjct: 619 HLEELELFVEQNFAPVAAKRELQLHTEIEENLPDAIISDGYRLKQILRNLLSNAFKFTTE 678

Query: 386 GGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
            G +   V   +G               +S++D G GIA  +   +  +F Q        
Sbjct: 679 -GSIRFKVSRANGEQLPDMLDSRKSYLALSVRDTGIGIASDKTDLIFEAFQQVDGTTSRK 737

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHESTQ 490
             G GLGL I++ +    GG   + S+  +G      L    P  + +     +  +ST 
Sbjct: 738 YGGTGLGLSISRELSKLLGGAITVESEQGQGSCFTLYLPEQTPTEKNMESHSREAFDSTD 797

Query: 491 YK 492
             
Sbjct: 798 VH 799


>gi|304394453|ref|ZP_07376374.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130]
 gi|303293363|gb|EFL87742.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130]
          Length = 375

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 8/238 (3%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +S F+A++SHELR+PL A+ GF E ++       + +    ++  +      +  
Sbjct: 139 AAEQMRSDFVANVSHELRSPLTALSGFIETLQ--GPAKDDADASDRFLTLMQAETGRMTR 196

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           LI ++L+LS++E  +       I L  I+     ++Q RA + +  I   I   L S+  
Sbjct: 197 LIADLLNLSKVEGRQAARPTDEIELQRILARACTLVQQRADDADKVIRFDIPSELPSIRG 256

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGEI 417
           DE  + Q++ NLL NAVK++A G  + V+V         SG    ++++D+G GIA   +
Sbjct: 257 DEDELVQLVQNLLENAVKYSAPGTAIDVSVTPDTRTPGISGPTLTVAVRDHGEGIAREHL 316

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           P +   F +          G GLGL I + ++  H G+  I S++ +G      LP  
Sbjct: 317 PRLTERFYRVDDHRGRKSGGTGLGLAIVKHVVQRHRGRLHIESEVGKGSIFKVHLPIE 374


>gi|121594707|ref|YP_986603.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
 gi|120606787|gb|ABM42527.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
          Length = 465

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             E+    +  F+A++SHE+RTPL  ++GF E ++   +   +NE    Y+  + +    
Sbjct: 198 ALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTLQL---SNEERARYLRMMSQQAVR 254

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA---------QEKNIEI- 350
           + NL+ ++L LSR+E          +++  ++R C    +  +         +   I   
Sbjct: 255 MQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQNQPGKLHQITFP 314

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +   +   V  +   ++  + NL++NAV++T  GG + V             ++D+GP
Sbjct: 315 TAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPDGSARFVVRDSGP 374

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI    +P +   F +   +      G GLGL I + ++  HG    + S + +G     
Sbjct: 375 GIEPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQVASVVGQGSTFTV 434

Query: 471 ILPNTR 476
           + P +R
Sbjct: 435 VFPPSR 440


>gi|303242285|ref|ZP_07328772.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590195|gb|EFL59956.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 470

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 9/239 (3%)

Query: 243 EEENLAK--SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           E  N  K  + F+AS+SHELRTPL +I G++  +       +     KE +G I      
Sbjct: 238 ELSNHQKLTNDFIASISHELRTPLTSIKGWAATLNSGGFTDMG--EIKEGLGIIENETDR 295

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L  L+NE+LD S++ +    L   AI + + + E    +  RAQ + I++  +I+  ++ 
Sbjct: 296 LALLVNELLDFSKLTSKSASLGMEAIDVGEFICEIRNQMNPRAQRQGIDLGLEIEYDMAL 355

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           + AD   ++QV++N+L N++K+T  GGR+ ++   +      I I+D+G GI E ++P V
Sbjct: 356 IKADRNRLKQVMINILDNSLKYTQEGGRIKISC-QSKEDEVLIGIEDSGIGIPEDDLPKV 414

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
              F + S +      G GLGL I   I++ H G+  I S+   G  V   LP ++ + 
Sbjct: 415 KEKFYKVSTS----FSGNGLGLAICDEIISLHNGRLEISSEFGVGTRVEIYLPLSKEIQ 469


>gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 871

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 8/252 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           +   +  +      +  AE  +LAKS FLA++SHE+RTPLN +LG  +++E   +   + 
Sbjct: 469 VTGQKRTEDSLRLAKSEAEAASLAKSEFLANISHEVRTPLNGVLGMLQLLETSRLSAEDA 528

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    ++      G+ L+ ++ +ILD S IEAGR  L   A  +  ++ +   +L L  +
Sbjct: 529 E----HVATALACGRGLVRVLADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLSLECE 584

Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400
           +K +     +   + +  A D   +RQ++ N++ NAVKFT  G     V +         
Sbjct: 585 KKELCATLDVAGDVPAFIATDAARLRQILFNVVGNAVKFTPRGTVHLSVSLASRRGEETH 644

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              +++D G GI E  I  +   F Q   ++     G GLGL I + ++    G   + S
Sbjct: 645 LLFAVRDTGIGIPEDRIEAIFEPFTQIDGSLTRKYGGTGLGLGIVKRLVGLLDGHITVES 704

Query: 461 KLREGVEVIAIL 472
           +   G E    +
Sbjct: 705 EPGGGTEFAFTI 716


>gi|283852012|ref|ZP_06369287.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572562|gb|EFC20547.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 543

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 155/410 (37%), Gaps = 35/410 (8%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154
            +D   G +   R  +   +         +  +       E    +    +LI  +   +
Sbjct: 5   RTDSGPGPLAAARTRVAALE-------ARVADLLARQERCELFFQHSVMGILIGDAAGRI 57

Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSN 211
            +        L +    +       +       ++   AG  A  L     I     + N
Sbjct: 58  LDANPRALALLGYAAGELCGKNIRDIVHPDDQQAVSVDAGPQAARLGRSFSIERRWRRKN 117

Query: 212 VKILSCQAEKDDL-------------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
              L  Q +   L             I   + A+  +      AE  + AKS FLA+MSH
Sbjct: 118 GSWLPVQVDFSQLDAASGLFQVMIQDITARKAAEEATIAALALAETASQAKSAFLANMSH 177

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           E+RTPLN ++G  +++     G        +Y+     S   LL +++++LD+S +++GR
Sbjct: 178 EIRTPLNGVMGMLQLLA----GTPTTPEQADYLATAMDSASGLLRILSDVLDISHLDSGR 233

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377
             L++   +L D++          A  K++   +++ P     +  D   +RQ++ NL +
Sbjct: 234 MVLADERFALTDVLEPVAASFAHEAALKSLAFSRRVAPDTPDELRGDPGRVRQILYNLTA 293

Query: 378 NAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           NA+K+T   G V + V    G            + D G GIA      V   F Q   ++
Sbjct: 294 NAIKYTPS-GEVRLEVAPVPGEADAAGATLEFLVADTGIGIAPAMQEQVFEIFSQADPSV 352

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
             +  G G+GL I + +    GG+  + S+   G EV   L   R  +  
Sbjct: 353 TRSYGGTGVGLAIVKGLTDLMGGRVTLCSQEGFGTEVRVRLRFARPGDAT 402


>gi|260867202|ref|YP_003233604.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O111:H- str. 11128]
 gi|257763558|dbj|BAI35053.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O111:H- str. 11128]
          Length = 914

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 6/246 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  KSL D+      + N AK++FL   +H+LR PL +I G +E +    +GPL+ +   
Sbjct: 137 EQQKSLVDQ----LSKANAAKNKFLGMAAHDLRNPLASIRGLAEFLRDGVVGPLSADQL- 191

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           + +  IH + Q +L ++NE+LD++ IEAG  ++  +  +L D++ + + +  + A +KN 
Sbjct: 192 DLVQTIHAASQSMLTMVNELLDVATIEAGELKIDPAQHNLGDLIEKAVYLANIDAAKKNT 251

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
            I      S      D   M+QV+ NLLSNAVK++  G R+ V V    GR     +KD 
Sbjct: 252 RIEITPPASPLYPSFDPAKMQQVVDNLLSNAVKYSPPGSRITV-VLHGDGRECSFGVKDQ 310

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           GPGI E E   +   FG+ S+     E+  GLGL I + I   H G     +    G E 
Sbjct: 311 GPGIPENERDRLFKDFGRLSVKPTGGEKSTGLGLAICRKITEAHHGSITAANLPGGGCEF 370

Query: 469 IAILPN 474
              LP 
Sbjct: 371 RVTLPL 376


>gi|87310341|ref|ZP_01092471.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
 gi|87286840|gb|EAQ78744.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
          Length = 588

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 156/428 (36%), Gaps = 28/428 (6%)

Query: 68  QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127
           +  I  M   I +   A    + ++     +   +        +      G  W      
Sbjct: 167 RLVIGAMALGIVVLTGA--YFIARRFEERIVAPVQQLTRACAGVAKGDYTGHVWAAAEDE 224

Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187
              T              +  L+  +     +  ++      V      + +++   +  
Sbjct: 225 LGETARQFSQMQAAIDLRVDELTGESNRLKTVLGSMVEGVIAVDA--QQRVLLANGAVRK 282

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA----KSLSDETRK--- 240
            LA      +             +    +  A  +    E EV+    ++LS +  +   
Sbjct: 283 LLAIRAEDPVGRPLLELTRNRSLDESFRAAIASDEPYRNEFEVSTTPRRTLSLQANRLPG 342

Query: 241 --------------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                                 +  F++S+SHEL+TPL A+  ++E ++L  +  + N  
Sbjct: 343 EPCPGVVMVLHDVTELRRLENMRREFVSSVSHELKTPLAAVRAYTETLQLGAIEDIENRG 402

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y  ++  I  S   L  LI ++L L+RIE+       + + + D++   + + +  A  +
Sbjct: 403 Y--FLSQIMDSADRLHELIQDMLHLARIESREEAFDITEVPIADVIENVLQVQRDVAASR 460

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I +         SV  DE+G+R ++ NL+ NA+K+T  GG V V  G   G    I++K
Sbjct: 461 QIALRIHPPEVEISVLGDEEGVRTILGNLIDNAMKYTPEGGSVDVAWGL-EGSHVAITVK 519

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI +  +  +   F +   A      G GLGL I +       G   + S++ EG 
Sbjct: 520 DTGLGIPQAALERIFERFFRVDKARSREMGGTGLGLSIVKHTAQAMNGGVTVESQVGEGS 579

Query: 467 EVIAILPN 474
           +    LP 
Sbjct: 580 KFTVRLPR 587


>gi|85703111|ref|ZP_01034215.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
 gi|85672039|gb|EAQ26896.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
          Length = 348

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E     +  F+A++SHELRTPL A++GF E ++       +      ++G +      + 
Sbjct: 108 EHAAQMRRDFVANVSHELRTPLTALMGFIETLQ--GPARHDQAAIDRFLGIMQSEAARME 165

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+E+         ++L  ++   +  L+  A+++  +I       +  V 
Sbjct: 166 RLVRDLLSLSRVESEERVRPRDEVNLGQVIGSVLHALRPLARDRACDISFDPPEGMV-VR 224

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGE 416
            ++  ++QV  NL+ NA+K+   G  + +T+  T              ++D GPGI    
Sbjct: 225 GNDDQLQQVFTNLIENAIKYGGTGNHITITLERTPRDATLRAPAIVARVRDQGPGIDPLH 284

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           IP +   F +          G GLGL I + I+  H G+  I S   EG E   ILP
Sbjct: 285 IPRLTERFYRVDTHRSREMGGTGLGLAIVKHIVNRHRGRLRISSTPGEGAEFSVILP 341


>gi|226943663|ref|YP_002798736.1| membrane sensor hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226718590|gb|ACO77761.1| membrane sensor hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 772

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 8/282 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +  AE +   A L  +    +  R  A E   A+S FLA+MSHE+R
Sbjct: 243 RLTEYLGELENMVSARTAELEAANARLTQSNRDLEAARSTALEMAQARSAFLANMSHEIR 302

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN       ++ L   GPL+NE  ++ +   H SG+ L+ L+N++LDLS+ E+G+ EL
Sbjct: 303 TPLNG---LLGMLSLSLDGPLSNE-QRQQLSVAHASGKVLVRLLNDVLDLSKFESGQMEL 358

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380
                 L  ++ +   +L   A    +E+   IDP L + V  D   +RQ+  NL+SNA+
Sbjct: 359 ERIPFDLGALIEDATALLSQSAA-PGVELTCLIDPGLPTQVIGDPTRVRQIASNLISNAL 417

Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
           KFT   GRV V +  +S     + I+D G GI+      +   F Q +  I     G GL
Sbjct: 418 KFT-RFGRVDVCLQASSEN-VRLVIRDTGIGISREAQTRIFQPFAQATANITRQYGGTGL 475

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           GL + + +     GQ    SK   G      LP        P
Sbjct: 476 GLALTRKLCEAMQGQLTFFSKEGLGSTFTVELPLPCHTPATP 517


>gi|298242581|ref|ZP_06966388.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555635|gb|EFH89499.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 511

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/316 (23%), Positives = 123/316 (38%), Gaps = 12/316 (3%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V      +   L     +  +         +         I     +  V +   + 
Sbjct: 190 LQTVLYILIGICSVLLLVCGLCSYWFSARAFRPIHHLARTARMINAQDLQKRVPLPRARD 249

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E  DL                R E     + RF+A  SHELRTP+  I   +EV    + 
Sbjct: 250 EVYDLAVLFNQMIG-------RLERAFEHQRRFVADASHELRTPVAVIRNMTEVALSRS- 301

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                E Y   +  I+   + L  LIN++L L+R +  + +L    + L  +  + I  +
Sbjct: 302 --EKTEEYIMALEGINEETERLGRLINDLLALARADEQKMQLDYEPVRLDFLAADAIESM 359

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  AQE+ + +        ++V  D   + Q+IL+LL NA+K+T  GG+V V+V      
Sbjct: 360 EPLAQERQVSLA-SGLLQAATVMGDAARLIQIILSLLDNALKYTNSGGKVTVSVEIYED- 417

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++D G GI+  E   +   F +   A   A  G GLGL I + ++    G   + 
Sbjct: 418 LAQLRVQDTGIGISPEERQHIFERFYRADPARSKALGGYGLGLSIVELLVRLQHGTVSVE 477

Query: 460 SKLREGVEVIAILPNT 475
           S+  EG   I   P  
Sbjct: 478 SEPGEGALFIITFPLA 493


>gi|259416294|ref|ZP_05740214.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259347733|gb|EEW59510.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 352

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  +  F+A++SHELRTPL A++GF E +        N      ++  +      + 
Sbjct: 119 EHASQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDAN--ARDRFLEIMEGEASRMN 176

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L L+R+E+      +  I L+  +   I  L   A+     +  +       + 
Sbjct: 177 RLVGDLLSLNRVESEERVRPKERIDLVAYLGSTIKSLGPIAESGGRNLALEAPDMPIEIP 236

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIP 418
           AD   ++QV  NL+ NA+K+      V +T              + + D+GPGI    +P
Sbjct: 237 ADPDQIQQVFTNLIENALKYGGENVTVSLTALDRDPALRCPAVRVQVIDDGPGIDPVHLP 296

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +          G GLGL I + I+  H G+  + S L +G     ILP
Sbjct: 297 RLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILP 351


>gi|222152736|ref|YP_002561913.1| alkaline phosphatase synthesis sensor protein [Streptococcus uberis
           0140J]
 gi|222113549|emb|CAR41350.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus uberis 0140J]
          Length = 441

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK-EYIGDIHRSGQHL 301
           E+ N+    F+++ SHELRTP+ +I GF+E I+     P   +T K E++  I+     L
Sbjct: 215 EKLNM---DFISNASHELRTPVTSIKGFAETIKN---MPEEEQTLKDEFLDIIYNESLRL 268

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +++  +L LS++   + +L ++ I+L D +      ++ +  EK++++   +   + ++
Sbjct: 269 EHIVEHMLTLSKV--NKTQLQKTEIALNDFLYYIGNSMKHQLHEKHLQLSFDLAEDV-TI 325

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            +D+  + Q++LNL+SNA+++T  GG++ ++  +       I++ D G GI++ E   + 
Sbjct: 326 KSDKYLLSQILLNLMSNAIRYTDEGGKITISTAF-KEGKIQITVSDTGIGISKLEQDRIF 384

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F + +        G GLGL I + +    GGQ  ++S++ +G       P +
Sbjct: 385 ERFYRVNKGRSRQSGGTGLGLSIVKELSQVLGGQVFVKSQIGKGSHFTLEFPKS 438


>gi|170759301|ref|YP_001788739.1| sensory transduction histidine kinase [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406290|gb|ACA54701.1| sensory transduction histidine kinase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 464

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 136/309 (44%), Gaps = 6/309 (1%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           ++    +   ++    M +    I    +    L    YIT      ++  L  + E   
Sbjct: 158 YVFMKILFGTMAVADFMGIIASIIIGYMVSRRMLKPIDYITKTAENISINNLKERIEVKG 217

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
              EL+   +  ++   R +     +++F++  SHELRTP+  I G++ ++  +  G  +
Sbjct: 218 PEDELKRLANTFNKMIDRLQGAFNRQAQFVSDASHELRTPIAVIQGYANLL--DRWGKND 275

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               ++ I  I     ++ NLI ++L L++ ++G   + +    L +++ E +   ++  
Sbjct: 276 RNALEKSIYGIKLEATNMANLIEKLLLLAKGDSGTVVMEKKEFWLNELIDEVVKESKII- 334

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
             +   I          ++AD K ++Q++   + N++KFT   G++ +++         I
Sbjct: 335 --EQNHIISSNKNDTVKIFADYKMIKQMLRIFIDNSMKFTPENGKIDISLEIQ-DEIVKI 391

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           ++ D G GI + EI  +   F     +    + G GLGL IA+ I+  H G   ++S+  
Sbjct: 392 TVSDTGIGIPKDEIENIFNRFYIVDKSRSKEKGGTGLGLSIAKWIIDMHQGTIDVKSEEY 451

Query: 464 EGVEVIAIL 472
           +G  V   L
Sbjct: 452 KGSRVTVTL 460


>gi|154492920|ref|ZP_02032546.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
 gi|154087225|gb|EDN86270.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
          Length = 827

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 125/247 (50%), Gaps = 8/247 (3%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +   ++ ++ AE+   ++ + + ++SH++R PL++I+G+ E++         +E  + Y+
Sbjct: 322 RQQLEKAKQYAEDLLHSREKLMLTISHDIRAPLSSIIGYIELLLRRR----PDERQRYYL 377

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
            ++  S  H+L+L+N +LD  R+E+G+ E+     S+  +  E     +  A+ K +   
Sbjct: 378 ENMTGSANHILSLVNGLLDFHRLESGQMEIQNVPFSVRTLFNEIYGSFRPIAEAKGLAFV 437

Query: 352 QKI-DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
             + +  +  ++  D   +RQ++ NLLSNAVKFT  G  V +           I++ D+G
Sbjct: 438 LNMKEEGMDRIYSGDPIRLRQIVSNLLSNAVKFTHEGRIVLIVKLSILNSQLTITVSDSG 497

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI E E   +   F +   +    E+G GLGL I + ++   GG   ++S   +G +  
Sbjct: 498 VGIPEEEQEKIFGEFARL--SGTEKEEGFGLGLSITRKLIELMGGTLSLKSVPGKGSDFT 555

Query: 470 AILPNTR 476
            +LP   
Sbjct: 556 IVLPLRE 562


>gi|260063627|ref|YP_003196707.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501]
 gi|88783072|gb|EAR14245.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501]
          Length = 734

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 17/290 (5%)

Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247
             A + +  L   + +   L+++N   L      +DL+             R  A +   
Sbjct: 306 LTAILSSAFLIIISLLAVSLYRNNQIKLK----TNDLLH---TKNRELHAARDAAVQAME 358

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
           AK+ FL+++SHELRTPL A+ G + ++  E      ++  +E++  +  SG +LLN IN+
Sbjct: 359 AKTNFLSTVSHELRTPLYAVTGLTHLLLEE----NPSKEQQEHLKALKFSGDYLLNFIND 414

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366
           IL +++I+A + E+ E   +L  I+ E +  LQ  A+E   E+    DP +   + +D  
Sbjct: 415 ILQINKIDADKLEMLEIEFNLKKILTEVMNSLQQTAKESKTEMILDFDPEIPSHLMSDPV 474

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRG--QYISIKDNGPGIAEGEIPTVLT 422
            + QV +NL+ NA+KFT   G V V   +          Y  ++D G GI+E +  T+  
Sbjct: 475 KLSQVFMNLMGNALKFT-KNGEVLVLARLVRKEDDRARVYFEVRDTGIGISEEKQKTIFD 533

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           SF QGSI I     G GLGL I +S++   G    + S L +G      L
Sbjct: 534 SFEQGSIQINREYGGTGLGLTIVKSLLGLFGSTIQLESTLGQGSSFFFEL 583


>gi|311277818|ref|YP_003940049.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747013|gb|ADO46765.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 775

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHISA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFMADLENLSGLQAQQKGLRFVMEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V + +G      ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDAGDMLRFEVEDSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKNMGGDITVSSLPGKGSTFTLTVNAPA 507

Query: 477 VLNF 480
           V+  
Sbjct: 508 VIEE 511


>gi|283836244|ref|ZP_06355985.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
 gi|291067608|gb|EFE05717.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
          Length = 778

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTPQ-GQVTVRARYDQGNMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDITVSSQAGKGSIFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   I +   E 
Sbjct: 508 VAEEIEDAFEED 519


>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1233

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 16/241 (6%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           + AK  FLA+MSHE+RTPLNA+LG+ +++  + +        ++ +  +  S   LL++I
Sbjct: 721 SQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRL----EPAQRQRLAVVEESAATLLSII 776

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364
           N+ILD S+IEAGR E+   +  L   +   +   ++ A+EK + +  ++DP L  SV  D
Sbjct: 777 NDILDYSKIEAGRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDPGLPGSVRGD 836

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAE 414
              +RQ++ NL++NAVK+T   G V +                      ++ D G GI  
Sbjct: 837 GLRLRQILRNLVNNAVKYT-EHGSVTLRASLLDRSPCPTGSGERVTLRFAVIDTGVGIPA 895

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            ++P +  SF Q    +   + G GLGL I + +     G+  + S   +G       P 
Sbjct: 896 DQLPAIFDSFTQVDGGLTKRQAGTGLGLAICRRLAGLMSGEVFVDSVAGKGSVFWLECPF 955

Query: 475 T 475
            
Sbjct: 956 E 956


>gi|150395346|ref|YP_001325813.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150026861|gb|ABR58978.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 415

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 158/419 (37%), Gaps = 45/419 (10%)

Query: 90  GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149
            K +            W        + + +   +L  V               A ++++ 
Sbjct: 6   AKLLWRIVAPRLAAERWL-------LCLSVLIAVLAAVAGIHPMSVLPFWVMLAAVILSR 58

Query: 150 SISALSNFMLPYAV-----FLSFFPVVVALSTQAIMSMHVLDISL----AGMLATALSFF 200
               +        V     F    P++ AL    ++      +      A      +   
Sbjct: 59  GAPPVRAAPADVGVDVETKFDPLAPLLDALDMPVLVVAADETVVFQNAAAEKAFGTIPQN 118

Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-----------------RK--- 240
           +Y++  +    +  +  +      + ++E A+ L  E                  R+   
Sbjct: 119 SYLSARVRSPGILDMVRETIATGKVNQIEHAERLPSEAVYVVRVAPVDIGSDVSGRRIFV 178

Query: 241 -------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
                  +A   +  +S F+A+ SHELRTPL ++ GF E ++       + +  +++ G 
Sbjct: 179 LTYRDISQARRIDRMRSDFVANASHELRTPLASLRGFIETLQ--GPAREDRKAQEKFFGI 236

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +H     +  L++++L LSR+E   +   +  + L  ++      L   A E ++ I  +
Sbjct: 237 MHEQVTRMSRLVDDLLSLSRLELKSHIAPDDTVDLGPLLGHVRDSLAPLAGELDVTIALE 296

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
           +  +   V  D   + +V  NL+ NA K+   G +V V +    G    +++ D+G GI 
Sbjct: 297 VPNTPVFVQGDRDELVEVFENLIENACKYGQEGKKVEVRLTGGEGNQAEVTVTDHGAGIP 356

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
              +P +   F + ++    +++G GLGL I + I+  H  + L+ S++ +G       
Sbjct: 357 AEHVPRITERFYRVNVEASRSKKGTGLGLAIVKHILTRHRARLLVHSEVGKGTVFTVRF 415


>gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1118

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 129/250 (51%), Gaps = 9/250 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +L+  +    +  + A+    AK  FLA MSHE+RTP+N ++G +E++    +    N
Sbjct: 723 ITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLETDV----N 778

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K Y+  + ++G  LL+LIN ILDL++++ G+ +L +   +   ++ E   ++ L A+
Sbjct: 779 AEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLAAE 838

Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401
            K + +  +I   +   V  D   ++QV+LNLLSNA+KFT   G + +++      G   
Sbjct: 839 AKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQ-GFIRLSLTVEGAEGAQQ 897

Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
              ++ D+G GI +  +  V   F QG  ++     G GLGL I + ++    GQ  + S
Sbjct: 898 LCYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVILMQGQIQVSS 957

Query: 461 KLREGVEVIA 470
           ++  G     
Sbjct: 958 QVDVGAIFQI 967


>gi|251778968|ref|ZP_04821888.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083283|gb|EES49173.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 515

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 4/235 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK---EYIGDIHRSGQHLLNLI 305
           K+ F A++SHE +TPLN IL   +++  +    +  E  K   +YI  I ++   LL L+
Sbjct: 255 KTEFFATVSHEFKTPLNIILTTVQLLADKFKNDVLTEEVKINLKYINGIKQNSYRLLKLV 314

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N ++D+++I+ G Y+LS    +++ ++   +I +     EKN  I          +  D 
Sbjct: 315 NNLIDITQIDGGIYKLSLENCNIVSVIENIVISVSKYINEKNRNIIFDTTKEEIILAIDC 374

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             + ++ILNLLSNAVK+T  GG ++V +    +     + IKD+G GI E +I ++   F
Sbjct: 375 DKIERIILNLLSNAVKYTNRGGNIYVNLSTDINNNRVIVKIKDDGIGIPEKDIDSIFRRF 434

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            Q         +G G+GL I +S++  HGG+  + +++++G E I  LP  +V +
Sbjct: 435 KQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKVNNEIKKGAEFIFFLPINKVKD 489


>gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1403

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 127/314 (40%), Gaps = 25/314 (7%)

Query: 184  VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
                         +     I Y+ F+     +  +      + E+E AK         AE
Sbjct: 817  PPPWKTWWAYTLYIICVCVIIYYTFRVIRNRIRLR--NALHLREMEQAK---------AE 865

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E N AK +F  +++HEL TPL  +    + +           TYKE    ++ +   L+ 
Sbjct: 866  EVNHAKLQFFTNITHELLTPLTILSASVDELRRTA------PTYKEQYRVMNNNINRLIR 919

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+ +IL+  + E G  +L  S   L   V   +   +   ++K+I+      P   + + 
Sbjct: 920  LLQQILEFRKSETGNLKLRVSEGDLTQFVHRSLDSFRPLMKKKDIQFQISCSPDSFNAYF 979

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   + +++ NLLSNA K+   GG V V +     R   + +KDNGPGI+      +   
Sbjct: 980  DPDKLDKILYNLLSNASKYNRAGGLVSVELSENEDRTARLVVKDNGPGISVEAQKNLFKR 1039

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-------TR 476
            F +G    K    G G+GL + + ++  H G   + S+  +G   I   P          
Sbjct: 1040 FYEGDY-RKFKTIGTGIGLSLVRDLVVLHHGTITVESEEGKGTLFIVNFPVLRNSYAEEE 1098

Query: 477  VLNFIPEDNHESTQ 490
            +   +P D  E+ Q
Sbjct: 1099 IEESLPTDAEEAKQ 1112


>gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
 gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
          Length = 1363

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 16/290 (5%)

Query: 192  MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
            M   A   +  +T     S + +     +K  L  + E A+  S     R  E +  K +
Sbjct: 783  MSVWAYLLYIILT---ISSILYLRFRGIQKLKLEFKQEQAERESA----RLHELDGLKIK 835

Query: 252  FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
            FL ++SH+LRTP++ I+G  E +   +    ++      +  + R+ + LLNL+N++LD 
Sbjct: 836  FLTNLSHDLRTPISLIMGPVEKLINHSPMDGDSMVQ---LKVVKRNARRLLNLVNQLLDF 892

Query: 312  SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
             +IE    +L+     +I  +RE     Q  +++K I    K      ++  D   + ++
Sbjct: 893  RKIEERELKLNPVMGDVIAFIREACESFQDLSEKKQIAFVIKSSIERLNIPFDPDKLERI 952

Query: 372  ILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFG 425
            + NLLSNA KF++ GG+V V V   +           + + D G GI E     +   F 
Sbjct: 953  MFNLLSNAFKFSSEGGKVMVVVYLKNTGRNNLENSLVVEVTDTGIGIKEESQAYIFERFY 1012

Query: 426  QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            Q       A+QG G+GL I +  +  HGG   + S    G      LP  
Sbjct: 1013 QSRALGAVADQGSGIGLSIVKEFVQMHGGHINVESVKGTGTTFHIELPFR 1062


>gi|257126796|ref|YP_003164910.1| histidine kinase [Leptotrichia buccalis C-1013-b]
 gi|257050735|gb|ACV39919.1| histidine kinase [Leptotrichia buccalis C-1013-b]
          Length = 533

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 6/276 (2%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           LS + E      EL+    + +E   R E     +++F++  SHELRTPL  I G++E+I
Sbjct: 233 LSKRIEIPKGEDELQNLILIINEMLDRLETSFENQTKFVSDASHELRTPLAIIKGYAEII 292

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                G  + + + E I  I     ++ NLI ++L L++ E  +       I   ++V +
Sbjct: 293 RKR--GTTDIDIFVESIDSIISETDNMRNLIQKLLFLAKGEITKINTKFVDIDANEMVHQ 350

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
                 +  +  +  +    D     +  DE  ++Q I  L+ NAVK++     V++   
Sbjct: 351 IHSDTVVSIKTHSFHLEMGKD---YKIKGDETLLQQAIRALIENAVKYSEPHTNVYIK-S 406

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
           +       ISI+D G GI++ +   +   F +  ++   A  G GLGL I + I+  H G
Sbjct: 407 FIKNGFGRISIRDEGVGISDEDAKRIFDRFYRVDLSRTKATGGTGLGLAIVKRIVEIHNG 466

Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           +  I SK+ EG E+  +LP  +++    E++ ++ +
Sbjct: 467 KIEIDSKMNEGTEISIVLPIEKIIINKDEESLKNVK 502


>gi|255306593|ref|ZP_05350764.1| putative two-component histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 618

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 124/238 (52%), Gaps = 2/238 (0%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHRS 297
           ++  EE +  +  F A++SHELR P+N I    +VIE +      +N+T K  +G I ++
Sbjct: 353 KRLEEEMDKTRMEFFANLSHELRMPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQN 412

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G  +L L+N ++D +++++G  +       +I  + E  + +   A + NI++    +  
Sbjct: 413 GNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIE 472

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
             S+  D + + ++ILNLLSN +K+    G++++ + +       + I D+G GI + +I
Sbjct: 473 EFSMLFDSEKLERIILNLLSNGIKYNKKDGKINIFL-YVKDNVFNMKISDSGIGIPKEKI 531

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             +   F Q    +    +G G+GL + +S++  H G   ++S+L  G E I  LP  
Sbjct: 532 DKIFNRFEQIDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGIGSEFIVSLPVR 589


>gi|16126760|ref|NP_421324.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221235542|ref|YP_002517979.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13424080|gb|AAK24492.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220964715|gb|ACL96071.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 839

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 147/384 (38%), Gaps = 22/384 (5%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
            L+     +   W    L+   +    + ++  ++ +L+      L   +L Y +     
Sbjct: 351 RLVAYGRLVEPGW--WFLMSFPSSDIVWSSLKTASWVLLFGFFGVLLQVLLLYRLTHQMV 408

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
              +     A                  +           + N ++L    ++  +    
Sbjct: 409 AAPLEALADAQQQGDPAAARPFEARPDEIGSLARALRRQRERNEELLRSLEQRVAVRTA- 467

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
                         E  N AKS FLA+MSHELRTPLN ++   + +  E     + +  +
Sbjct: 468 ------------ELERANQAKSVFLANMSHELRTPLNGVIAIGDRLAEE----EDPQARR 511

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E    +  SG+ L  ++ +ILD+S+IEAG+++LS +   L+ +VR    +    A+ K +
Sbjct: 512 ELASLVTSSGRLLEQVLGDILDVSKIEAGQFQLSPAPFDLVQLVRSMAELHAAAAKAKQL 571

Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407
            +   + P    S   D   + Q++ NLL+NAVKFTA  G V + V    G      ++D
Sbjct: 572 SLRWSVSPDAEGSYDGDAGRISQILSNLLANAVKFTAK-GEVSLEVDRQ-GEALRFVVRD 629

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G G  +     +   F Q   +I     G GLGL I  ++     G     +   +G  
Sbjct: 630 TGVGFDDAVRDRLFKRFVQADQSITRQFGGTGLGLSICAALAEMMQGSISADAVPGQGAR 689

Query: 468 VIAILPNTRVLNFIPEDNHESTQY 491
              +LP  R          E  + 
Sbjct: 690 FEVVLPLPRCAEVADVAVEEDREI 713


>gi|305666831|ref|YP_003863118.1| two-component system sensory/regulatory protein [Maribacter sp.
           HTCC2170]
 gi|88709055|gb|EAR01289.1| two-component system sensory/regulatory protein (hybrid family)
           [Maribacter sp. HTCC2170]
          Length = 594

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 9/241 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           ++ +A++SHE+RTPLN I+GF+++++ + +    N+   E +  I  +   LL +INE+L
Sbjct: 84  TKLIANVSHEIRTPLNGIIGFTDLLKEDNL----NQNQLEKVEAIQTASHSLLGIINELL 139

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368
           + S++  G   +++   +   ++   + +       +++ +  KIDP +  +   D   +
Sbjct: 140 EYSKLSEGLESINQDDFNFDSVIDNVMYLCDTLITSEDVVLKSKIDPGIPKILKGDPAKL 199

Query: 369 RQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFG 425
            Q++LNL+ NAVKF   G  +  V++     +  Y+   I D G GI++  +  +   F 
Sbjct: 200 SQILLNLIGNAVKFVEKGEIILDVSLKNQRNKDIYLEFIISDTGIGISQENLKHIFGYFK 259

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IPED 484
           Q          G GLGL I + I+   GG   + S+L  G      LP  R     IP +
Sbjct: 260 QADSYTSVNYGGSGLGLSIVKQIIDLLGGTIEVESELGTGTVFKFTLPYKRGDESGIPTN 319

Query: 485 N 485
           +
Sbjct: 320 D 320


>gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
 gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 118/276 (42%), Gaps = 19/276 (6%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           L    ++  L   +    +     ++ AE  N AK+ FLA+MSHELRTPLN I G  E++
Sbjct: 123 LRLHRQQRVLEGMVAARTAELLRAKEEAEAANRAKTAFLANMSHELRTPLNGIHGMIELL 182

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               +    +   +E+   +  S   LL L+  +++LSR++AG   L+ +   L + +  
Sbjct: 183 AESGL----DAQQREFADYLRGSANRLLALLTSLMELSRLDAGGMVLAPAPYDLSETLEA 238

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV---- 389
                  +A  K +     +   +   V  D   + Q ++NLL NAVKFT  GG V    
Sbjct: 239 LTAAFSRKAAAKGLSFRADMATDMPRLVVGDRAALVQALVNLLENAVKFTPRGGVVLAAG 298

Query: 390 ------HVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
                  V           R     + D G GIA+ ++  +  SF      +     G G
Sbjct: 299 PMDPPADVRAFPEERTPWRRWLRFCVHDTGVGIAQDKLANIFRSFVIAEDFLSKEFGGAG 358

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           LGL IA+ + A HGG+  + S    G      LP  
Sbjct: 359 LGLCIAKELAALHGGRVTVESAPGVGSRFCLELPFE 394


>gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 807

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 174/491 (35%), Gaps = 35/491 (7%)

Query: 21  DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80
           D +    P +   D  +     ++L  ++ +  +  L  A           F    L   
Sbjct: 51  DDIPEVGPGRRATDMPVD-APAKALQNLATVGLVIALATALYVVAGEGINRFFGVGLAFF 109

Query: 81  AVYAANLSLGKKVMNSDIKIGEV--YVWRIWLLVGQIAIGLCWTL--------LTLVEPG 130
           A   A   L    M   I+  +      R  +   +      W L          L   G
Sbjct: 110 AGGLAVWRLFADDMQRSIQSLQHKDEKIRRLMARCEELEDQAWELGESDERHASILGTLG 169

Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190
                            A       +  L     +             I  +     +  
Sbjct: 170 DVVIRRDQAGMITYANSAADDVFGKDHELQPGRLMQLPIANK--VAGEIFDLDAPAENNG 227

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-------AELEVAKSLSDETRKRAE 243
           G+    L   T      F      +   A    L+        E  + +      R  AE
Sbjct: 228 GIGFGDLRLRTAQGERWFSRIDIPVRDTATDRQLVQTVLRDVTERRLIEEELLAARHSAE 287

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             N AKSRFLA++SHE+RTPLN +LG + ++    +          YI  +  SG+ LL 
Sbjct: 288 TSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTRLTK----EQSAYIKALETSGETLLL 343

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362
           LI+E+LD S++EAG+ ++  + I +  +    + +L  +A  K++EI   ID  L   V 
Sbjct: 344 LIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVELLAPKAHAKHLEIGTLIDSRLPEHVT 403

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPT 419
            D   +RQ++ NL+ N VKFT  GG  V +        G ++   ++D G G A  E   
Sbjct: 404 LDATRVRQILFNLIGNGVKFTDDGGVAVELHGRPNLEGGSFLDLVVRDTGIGFAADEAER 463

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
           +   F Q          G GLGL IAQ +    GG    R     G      LP      
Sbjct: 464 LFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMGGGISARPASEGGALFEVSLP------ 517

Query: 480 FIPEDNHESTQ 490
            IPED  E+T 
Sbjct: 518 -IPEDLTETTD 527


>gi|22095659|sp|Q41342|ETR1_SOLLC RecName: Full=Ethylene receptor 1; Short=LeETR1
 gi|1163081|gb|AAA85479.1| ETR1 homolog [Solanum lycopersicum]
          Length = 754

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 29/284 (10%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ E        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 322 SHAAILEESMRARDLLME---QNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIA 378

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L     +L 
Sbjct: 379 LSSLLQETDLTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLH 434

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            + RE   +++  A  K + +   +   L   V  DEK + Q++LN++ NAVKF+   G 
Sbjct: 435 ALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKE-GN 493

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V ++                             + IKD G GI   +IP + + F Q   
Sbjct: 494 VSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQA 553

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
              +   G GLGL I +  +    G   I S+ L +G   I I+
Sbjct: 554 LATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFII 597


>gi|258623303|ref|ZP_05718309.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
 gi|258584435|gb|EEW09178.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
          Length = 573

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + +S    K++L   +E+        +K AE+ N +KS FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAISDIEHKEELQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  ++          E +  +  S + LL +IN+ILDLSRIE+G + L    
Sbjct: 227 AVLGLIDILRSDSTSY-----QVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTA 384
           I L   + + ++  +  AQ+K ++   + + +     + D   + Q++ N++ NA+KFT 
Sbjct: 282 IDLEKKLDQSLVYHRQIAQDKGVQFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTK 341

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV + + +       I ++D G GI    I  + T F Q   +I     G GLGL I
Sbjct: 342 Q-GRVDIQLNYIEDG-IDIQVQDTGIGIEPKRIEQLFTPFIQADNSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + ++   GG   + SK+  G      +P 
Sbjct: 400 TKHLVELMGGTINVDSKIDIGTLFTLRIPL 429


>gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 778

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|325262634|ref|ZP_08129371.1| putative His Kinase A (phosphoacceptor) domain protein [Clostridium
           sp. D5]
 gi|324032466|gb|EGB93744.1| putative His Kinase A (phosphoacceptor) domain protein [Clostridium
           sp. D5]
          Length = 483

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 143/312 (45%), Gaps = 10/312 (3%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI------A 226
           +L   +     +L I L  ML  +L     I   L +    I       DD +       
Sbjct: 176 SLKILSTKGSAILGIVLILMLGISLFIADRIVKPLRRITESIADVSEGYDDEVLHVNTFT 235

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E +      ++   R ++ + ++  F++++SHELRTPL ++   ++ +  +   P+  E 
Sbjct: 236 ETKQLSDAFNKMLGRLKQLDQSREEFVSNVSHELRTPLTSMKVLADSLLAQDDVPI--EL 293

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
           Y+E++GDI +      ++I ++L L +++    +L+  ++++ +++   +  L+  A++K
Sbjct: 294 YQEFMGDIAKEIDRENDIIADLLSLVKMDKTAKDLNIKSVNINELMELILKRLKPIAEKK 353

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N+E+  +      +   DE  +     NL+ NA+K+    G VHV++     +  Y+ + 
Sbjct: 354 NVEVVLE-SFRPVTAEIDEVKLTLAFSNLVENAIKYNQEEGWVHVSLNA-DHKYFYVKVA 411

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D+G GI E +   V   F +   +      G GLGL I ++ +  H G   + S   EG 
Sbjct: 412 DSGIGIPEQDQQHVFERFYRVDKSHSREMGGTGLGLAITRNAIIMHRGSIKVYSSEGEGT 471

Query: 467 EVIAILPNTRVL 478
                +P T V 
Sbjct: 472 TFTVRIPLTYVA 483


>gi|302671320|ref|YP_003831280.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302395793|gb|ADL34698.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 942

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FL++MSH++RTP+NAILG +E++  ++      E    Y   I  +G+ LL LIN+I
Sbjct: 344 KSHFLSTMSHDIRTPMNAILGLNEMVLRDSH----EEEIVAYSESIRTAGRTLLGLINDI 399

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367
           LD S+IEAG+ ++     S   ++ + + M+Q++A++K +     +D ++  +   DE  
Sbjct: 400 LDFSKIEAGKMDIINVDYSFASLLNDLVNMVQVKAEDKGLAFNLDVDRNIPVILNGDEIR 459

Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422
           ++QVI N+LSNAVK+T  G    +        S    Y  +S+ D G GI   ++  +  
Sbjct: 460 IKQVITNILSNAVKYTKEGSINFKATFEKVKDSPDQIYLNVSVSDTGVGIKPEDMKRLFK 519

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F +   +     +G GLG+ IAQS +   G    + S+  +G      L
Sbjct: 520 AFERIEESKNRNVEGTGLGMSIAQSFLNMMGSHIEVESEYGKGSTFSFKL 569


>gi|229059542|ref|ZP_04196924.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603]
 gi|228719825|gb|EEL71419.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603]
          Length = 488

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 9/312 (2%)

Query: 167 FFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---ILSCQAEKD 222
           FFP  V +L    I++  +L   ++  +   L      T  + K ++        + E  
Sbjct: 176 FFPYFVCSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVKPLAKDEIG 235

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I+       
Sbjct: 236 ELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGI--AR 293

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  I+     +  LI+E+   S+++          + +   + +CI  LQL 
Sbjct: 294 TPEQLDKYLTIIYHKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLE 353

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRG 400
            Q+K I +           V  D + +R+VI N++ N+VK+     G + + +  +    
Sbjct: 354 LQDKGIAVSWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESID-Y 412

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  HGG   + S
Sbjct: 413 VTIYIKDNGIGIEEKALPYIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVES 472

Query: 461 KLREGVEVIAIL 472
           K  +G  +   L
Sbjct: 473 KKGKGTTLAFTL 484


>gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 653

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 25/450 (5%)

Query: 45  LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL------ITLAVYAANLSLGKKVMNSDI 98
           L  ++  L   V     I   + ++     W            +  A ++  + +     
Sbjct: 54  LTSLAGGLAAIVASTVVIAALWWRDAPTATWLADAGTFVAIGVIECALIAAVRPLFARTR 113

Query: 99  KIGEVYVWRIWLLVGQ------IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
            + +    R             +   +       +         ++  ++A  +     +
Sbjct: 114 AVDDARDARREPAAAPPPSEDVLLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAA 173

Query: 153 ALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG--MLATALSFFTYITY 205
            +          P  +     P  +      +  + VL +        AT  +       
Sbjct: 174 TMIGRDVTTLFAPRWLRRQPVPASIDEVHAPVGPIDVLCMRQDAHCFRATFAASPIVDAN 233

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                    L    E+        ++   + + R +A+  N  K   LA++SHELRTPLN
Sbjct: 234 GHVDGLSMTLREARERRRDERRDRLSLRGARDARVQADTANRLKDELLATVSHELRTPLN 293

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            I G+ EV+             ++ +  I RS + L  ++ ++LD S +  G+  L  + 
Sbjct: 294 VIYGWVEVLRSVDGQGFA----QQAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTP 349

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + +  +V +        A  K I +  +   +   + AD + + QV+ NLLSNA+KFT  
Sbjct: 350 VDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPS 409

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GGR+ V++         +S+ D G G+A   +P +   F + + A  S ++G+GLGL I 
Sbjct: 410 GGRIVVSLARVDAH-VSLSVADTGQGMAPEALPHLFDPFNRPANAPASPQRGLGLGLSIV 468

Query: 446 QSIMANHGGQFLIRSK-LREGVEVIAILPN 474
           ++I   HGG     S+    G+ V   LP 
Sbjct: 469 RNIAELHGGSVEAASEGPGRGLTVTVTLPA 498


>gi|260901725|ref|ZP_05910120.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308108890|gb|EFO46430.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 1204

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + +K A+    A+  FLA+MSHELRTPL+A  G  +++  +       
Sbjct: 627 ITQQKEREQALIDAQKEAQTAVRARENFLATMSHELRTPLSAAHGILDLLNRQV----TA 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++ +E I    RS  HL  L++E+LD S++EAG+  ++ +   L+  + +     + RA 
Sbjct: 683 DSNRELIAQAMRSLNHLNVLVDEVLDYSKLEAGQLTVAPAKTDLLKTLCDVFRSFEPRAL 742

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++    I P S + +  D   + Q+  NLLSNAVKFTA  G + ++V     +   +
Sbjct: 743 AKGLDYKVTIKPFSDAFIEIDALRLVQITTNLLSNAVKFTAE-GEIGISV-ILHEKQLIL 800

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ +G++  +L  F Q   +I     G GLGL I   ++   GG   I S+  
Sbjct: 801 KVADTGIGMTDGQLEGILNPFVQADDSITRKYGGTGLGLSIVDRLIDCMGGVLCIDSQFG 860

Query: 464 EGVEVIAILPNTRVLNFIPE 483
            G  +   LP  R  +  PE
Sbjct: 861 LGTTITVKLPIER-CDSEPE 879


>gi|255534205|ref|YP_003094576.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340401|gb|ACU06514.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
          Length = 747

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 3/230 (1%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              K  F+   SHEL+TP+  I G+ ++++       +++     +  I     +L  LI
Sbjct: 517 EQQKDDFIKMASHELKTPVTTIKGYVQLLKRTRKDS-DDKFLVNSLNTIENQVNNLSVLI 575

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
            ++LD+SR+E G   L++   SL+++V E I  ++   Q   I    K    +  V+AD+
Sbjct: 576 GDLLDISRMENGYLLLNKHKFSLVELVTESIEDIKASEQSHEINFEMKHFADI-EVFADK 634

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + ++QV+ NLL+NA+K++     V+V + W       +S++D G G+   E+  +   F 
Sbjct: 635 ERLKQVLTNLLTNAIKYSPKANSVNVEL-WVEDGRGIVSVEDFGIGMEASELGKIFERFY 693

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + S   +    G G+GL I + I+    G+  + S+  +G +    LP +
Sbjct: 694 RVSGDDEKTFPGFGIGLYIVKDIIQRLDGKIWVESEKNQGSKFYFSLPVS 743


>gi|329960206|ref|ZP_08298648.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328532879|gb|EGF59656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1376

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 148/311 (47%), Gaps = 10/311 (3%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            I +  + ++++  +     +++ Y+ Y L  + +  L+ +  ++ +I  L     + +  
Sbjct: 793  IWNSDIRELTVVVLPPFWATWWAYVVYTLLFAALLYLTYRVVRNRMI--LRNTLRMREME 850

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            + +AEE N AK +F  +++HEL TPL  I    + ++++  G      Y +    +  + 
Sbjct: 851  KSKAEELNHAKLQFFTNITHELLTPLTIISATVDELKMQVSG------YDDLYTVMTNNI 904

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            + L+ L+ +IL+  + E G   L  S   ++  V+      Q   +++ I      DP  
Sbjct: 905  RRLIRLLQQILEFRKAETGNLRLRVSPGDVVTFVKNEAESFQPLIKKRKIHFSVLCDPES 964

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEI 417
               + D   + +++ NLLSNA K+   GG + VT+ +  +     + +KDNG GI++ + 
Sbjct: 965  IMGYFDTDKLDKILYNLLSNAAKYNKEGGYIQVTLSYAENKDFICLRVKDNGCGISKEKQ 1024

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
             T+   F +G    K    G G+GL + + ++  HGG+  + S + +G E +  LP  R 
Sbjct: 1025 ETLFKRFYEGDY-RKFNTIGTGIGLSLTKDLVELHGGEIRVDSDVNQGAEFVVTLPVDRS 1083

Query: 478  LNFIPEDNHES 488
                 + + E+
Sbjct: 1084 YFTEEQIDEET 1094


>gi|89097844|ref|ZP_01170731.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087346|gb|EAR66460.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 12/281 (4%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
           L   L+        +   +         +D++         +S   +K  E     K  F
Sbjct: 191 LTHPLADIKKAAERVSSGDYSSRVQIQSEDEIGRLARAFNQMSSSIQKEDER----KKEF 246

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA +SHELRTP++ I G+S+ I        +     +Y+  I+R    +  L+ ++LDLS
Sbjct: 247 LADISHELRTPISYIKGYSDAILKGIADKDD-----KYLHLINRESVRMERLVGDLLDLS 301

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           R++   Y+L    + L  ++ + ++      +EK +E+   +DP +  +  DE  + Q++
Sbjct: 302 RLDTDEYQLVRMPLPLAQVIEDSLVRYTPALREKRVELRTMLDPDII-IMGDEGRIGQIV 360

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            N++ N++++T   G + +T+  ++     ++I D G GI   ++ ++   F + + A  
Sbjct: 361 QNIMDNSIRYTGK-GYIEITLKASNRDCI-LTIIDTGSGIPPEDLESIKQRFYRVNKART 418

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             + G GLGL IA+ ++  H G   I S   EG  V   LP
Sbjct: 419 RDDGGTGLGLAIAEKLIQLHHGSISIASSPGEGTTVTIKLP 459


>gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 608

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|299134016|ref|ZP_07027209.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298590763|gb|EFI50965.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 433

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 127/239 (53%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +RAEE    ++ F+A+ SHELRTPL A+ GF + ++       + +  + ++G +H    
Sbjct: 193 RRAEE---MRADFVANASHELRTPLAALSGFIDTLQGPARD--DPKARERFLGIMHAQAT 247

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  LI+++L LSR+E   +   E+ + L+ I+R+ I  L++ A E+ + I  +      
Sbjct: 248 RMARLIDDLLSLSRVELSAHVRPEAKVDLLAILRQVIDGLEVLANERGVVIETQFPDVPV 307

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
            +  D + + +V  NL+ N +K+ A GGRV V++  T+         ++++D GPGIA  
Sbjct: 308 FIAGDTEELLRVFENLIENGLKYGASGGRVTVSLSRTAPDEGPAEIRVTVRDYGPGIAPE 367

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +P +   F +  +    A+ G GLGL + + I++ HGG+ LI S   +G       P 
Sbjct: 368 HLPRLTERFYRTDVGDSRAQGGTGLGLSLVKHIVSRHGGRLLIESVFGKGATFTVCFPP 426


>gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 364

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
              +E   +AE+    KS FLA++SHE+R PLNAI+GFS ++  E  G L     +EYI 
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYIN 182

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            I  + + LL ++N++LDL+++E+G          L  ++ E +   Q++     + +  
Sbjct: 183 LIQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTY 241

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   + +D   ++QV+ N ++NA+K+T+IG  +             +S+ D G G+
Sbjct: 242 PASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIIL--SYQAMENEVLLSVTDTGEGM 299

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +E     V   F +G    ++ +QG+GLGL I Q+I+   GG+  + S+  +G      L
Sbjct: 300 SEEIKLHVFDRFYKG----RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTL 355

Query: 473 P 473
           P
Sbjct: 356 P 356


>gi|154249101|ref|YP_001409926.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
 gi|154153037|gb|ABS60269.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
          Length = 466

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               F  +VK ++   EK  L+    +    S++  ++ +E +  K+ F+A++SHELRTP
Sbjct: 201 HKSFFSISVKQVNLLGEKKVLVN---IRNITSEKEVQKLKELDKIKTNFIANISHELRTP 257

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L AI  + E +      P++ E   E++  ++     L  L++++LD S++E+   ++ +
Sbjct: 258 LAAIKAYVETMLN---MPMSQEEIHEFLDVVYSQSIRLEELLSDLLDFSQLESHTMKILK 314

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            ++++ +I+   I  L+  A+EK++ +          +  D K + QVI+NLLSNA+KF+
Sbjct: 315 ESVNICEIIEHSIETLENMAKEKDVTVEYNCSN--LEIKCDRKRIEQVIVNLLSNAIKFS 372

Query: 384 AIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440
                   V + V    G    I ++DNG GI E     +   F +    +  A  G GL
Sbjct: 373 DQAKEKRFVRIDV-LDEGEIVKIIVEDNGIGIPESAFDKIFERFYRVDNELTYAVPGTGL 431

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           GL I + I+  H G  L+ S++ +  + I  LP 
Sbjct: 432 GLAIVKEIVELHEGNILVESEVGKYTKFIVTLPK 465


>gi|47231510|gb|AAT12782.1| PhoR [Alcaligenes faecalis]
          Length = 432

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 152/440 (34%), Gaps = 30/440 (6%)

Query: 55  FVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ 114
              +  +I  W     +   W    + +      L   V+ S +++  V  W   L    
Sbjct: 1   MFSIFTSIVIWALLGSLIGWWLGPFIGLALFCGGLLMLVVISTLQLSRVERWTRNLNDPP 60

Query: 115 IAIGLCWTLLTLVEP----------GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164
                 W  +                        I  +A  L   +I+   +  L +   
Sbjct: 61  PPAVGPWDAILAPIYRQLRRDRQEIQDLNRYVDGIMMAAEALPDGAITLNGDMELQWCNQ 120

Query: 165 LSFFPVVVALST-------QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217
            +   + + L+T         +        +        L              +++   
Sbjct: 121 TACEHIGLNLATDRHHSIFNILREPEFSRYARQPQWDGPLLLHLSKDGRERSLLLQLTPY 180

Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
              +  ++        + + TRK           F+A++SHELRTPL  +LGF E ++  
Sbjct: 181 GLGQFLIVTRDVTQVEMLETTRK----------DFVANVSHELRTPLTVLLGFLETLQDM 230

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
               L  E  + Y   +    +H+ +++ ++L LS +E+    +    + +  ++   + 
Sbjct: 231 PPESLPLEQRQRYEQMMLEQTRHMQSIVADLLTLSTLES-SPTVEGETVQVSQLIESALK 289

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             Q  A       F        ++   E  +   + NL++NAV++T   G + V      
Sbjct: 290 --QGEAISGGQHSFVTDLDPRIAIQGMETELSSAVSNLITNAVRYTPKDGTITVRWYLND 347

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                 S++D G GIA  +IP +   F +       +  G GLGL I + I+  H     
Sbjct: 348 NGEACYSVQDTGIGIAAQDIPRLTERFYRVDKGRSRSTGGTGLGLAITKHIIVRHNADLQ 407

Query: 458 IRSKLREGVEVIAILPNTRV 477
           I+S+L  G   +   P +RV
Sbjct: 408 IQSRLGVGSVFMLRFPKSRV 427


>gi|333010840|gb|EGK30266.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-272]
 gi|333021339|gb|EGK40592.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-227]
          Length = 431

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 151/446 (33%), Gaps = 37/446 (8%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS  + V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWQWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLL-------TLVEPGTWTPEYLTIYKSATLLIA 148
           S         W        +  GL    L        L                A +L  
Sbjct: 62  SMTPPPGRGSWE------PLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTT 115

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHL 207
                     L   +    +P     +   ++        L     +  L+       HL
Sbjct: 116 EEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHL 175

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
               + ++    ++  ++A         +  R+           F A++SHELRTPL  +
Sbjct: 176 ---EISVMPYTHKQLLMVARDVTQMHQLEGARR----------NFFANVSHELRTPLTVL 222

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
            G+ E+++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + 
Sbjct: 223 QGYLEMMDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVD 279

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           +  ++R  +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G 
Sbjct: 280 VPMMLR-VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGT 337

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            + V            S++DNGPGIA   IP +   F +   A      G GLGL I + 
Sbjct: 338 HITVRWQRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKH 396

Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473
            + +H  +  I S + +G     ++P
Sbjct: 397 AVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|328947720|ref|YP_004365057.1| histidine kinase [Treponema succinifaciens DSM 2489]
 gi|328448044|gb|AEB13760.1| histidine kinase [Treponema succinifaciens DSM 2489]
          Length = 705

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 14/282 (4%)

Query: 221 KDDLIAELE-VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             D   E E   +    E    AE  + AKSRFL++MSH++RTP+NAI+G++ + E    
Sbjct: 299 NVDTETEHEMKQRKALQEALSMAELASHAKSRFLSNMSHDIRTPMNAIIGYTSLAEKHIG 358

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
            P   E  K  +  I  +  +LL LIN++LD+SRIE+G+ ++  ++ ++ DI+ E   ++
Sbjct: 359 NP---ELIKSDLARIKTNSSYLLCLINDVLDMSRIESGKIKIKFTSNTIEDILAEVDSVI 415

Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
           Q + Q K +        +LS  V+ D+  ++Q+++N+L N+VK+T   G +  T   T  
Sbjct: 416 QPQLQSKKLNYSVLRHGNLSRKVFCDKLRLKQILINILGNSVKYTGENGSIKFTAAETPS 475

Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                      IKDNG G++E     V   F +         QG GLGL I+++++    
Sbjct: 476 VSDGYSSYQFRIKDNGIGMSEEFQKKVFNPFERDENIENFHVQGTGLGLSISKNLVEKMD 535

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495
           G   ++SK     E +            PE      +    A
Sbjct: 536 GSIFLKSKKDVETEFLICF----DFENAPETESGKKEISASA 573


>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1334

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N +K RF  ++SHE RTPL  I+   E++       +    Y + +  IHR+   +  L
Sbjct: 811  LNQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVN-IHRNTLRMKRL 867

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I E+LD  + E G  +   S  ++   + E  +  +  A+ K I +          VW D
Sbjct: 868  ITELLDFRKQEQGFEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFD 927

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               + +VI NLLSNA K+T +GG + ++V    G    +++ D G GIAE  +  +   F
Sbjct: 928  VVQLEKVIYNLLSNAFKYTPLGGTISLSV-QEYGNSVMVTVSDTGVGIAEESLDKIFDRF 986

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q      + ++G G+GL +A+SI+  H G+  +RS   +G   +  LP 
Sbjct: 987  YQVDS--MNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
 gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
          Length = 1334

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N +K RF  ++SHE RTPL  I+   E++       +    Y + +  IHR+   +  L
Sbjct: 811  LNQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVN-IHRNTLRMKRL 867

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I E+LD  + E G  +   S  ++   + E  +  +  A+ K I +          VW D
Sbjct: 868  ITELLDFRKQEQGFEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFD 927

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               + +VI NLLSNA K+T +GG + ++V    G    +++ D G GIAE  +  +   F
Sbjct: 928  VVQLEKVIYNLLSNAFKYTPLGGTISLSV-QEYGNSVMVTVSDTGVGIAEESLDKIFDRF 986

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q      + ++G G+GL +A+SI+  H G+  +RS   +G   +  LP 
Sbjct: 987  YQVDS--MNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|330977654|gb|EGH77557.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 782

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 134/254 (52%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV-IELETMGPLN 283
           I+E           +++A+  + AKS FLA+MSHE+RTP+NA++G  E+ ++    G L+
Sbjct: 333 ISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD 392

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
               +  I   + S   LL+LI +ILD++RIE+GR  L+    +L  +V   + +    A
Sbjct: 393 ----RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 448

Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399
           ++K++E+  ++D  + + V  D    +Q++ NL+SNA+KFT +G  +V +    +     
Sbjct: 449 RQKDLELVLELDSRISADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLQAAESPNPQL 508

Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              +I+++D+G GI+  +   +   F Q     + A  G GLGL I +++    GG   +
Sbjct: 509 LHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRNLCMMMGGNLSL 568

Query: 459 RSKLREGVEVIAIL 472
            S    G  +   L
Sbjct: 569 YSTPGHGTRISMNL 582


>gi|260555378|ref|ZP_05827599.1| signal transduction histidine kinase [Acinetobacter baumannii ATCC
           19606]
 gi|260411920|gb|EEX05217.1| signal transduction histidine kinase [Acinetobacter baumannii ATCC
           19606]
          Length = 1157

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/320 (29%), Positives = 163/320 (50%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  E  
Sbjct: 607 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEAT 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 667 SKDLQDARTAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 783

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 784 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLIDLLGGQLSVTSQLN 894

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 895 QGSQFKIKFYLPSKEVVHPI 914


>gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 788

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 283 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 338

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 339 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 398

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 399 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 457

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 458 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 517

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 518 VAEEVEDAFEED 529


>gi|149927893|ref|ZP_01916143.1| probable sensor/response regulator hybrid [Limnobacter sp. MED105]
 gi|149823332|gb|EDM82565.1| probable sensor/response regulator hybrid [Limnobacter sp. MED105]
          Length = 757

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 10/269 (3%)

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
            +N ++       + +   L        E   R E  + AK+ FL++MSHE+RTPLN I+
Sbjct: 218 NTNDELGDVSKAVNQMAHNLAHKNKRLREANTRVEMASQAKTEFLSNMSHEIRTPLNGIV 277

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + +++  ++        K  +  + ++ ++L++L++++LD+S+IEAG  EL     S 
Sbjct: 278 GLTYLLKDTSVSS----NQKLLLESLEKTSRNLIDLVSDVLDISKIEAGSMELESKPFST 333

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
           ++ + +   ++   A  K IE+       +   +  DE   RQ+++NL+ NA+KFT + G
Sbjct: 334 LEFIDKVSGIMTGAAASKPIELIIDPPSDMPRELIGDELRFRQIVVNLVGNAIKFTQV-G 392

Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
            VH+ +   S +G      + ++D G GI+      +   F Q + ++     G GLGL 
Sbjct: 393 HVHLILQVLSNQGGVCRLRVEVRDTGVGISPQGQTNLFRQFHQANTSVAREFGGSGLGLS 452

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           + + ++    G     S+L  G    A L
Sbjct: 453 LVKKLVELMNGSLGFNSELGHGSTFWAEL 481


>gi|162450584|ref|YP_001612951.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161166|emb|CAN92471.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 414

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/325 (25%), Positives = 144/325 (44%), Gaps = 23/325 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFF------TYITYHLFKSNVKILSCQAEKDDLIA 226
           A+    +  +   +I +A M A    +         I     +  ++    Q +      
Sbjct: 80  AIPIIMLTGVGDEEIDMAAMSAGVADYLVKGRFDAQILERTIRYAIEHKRSQLKLKQYAD 139

Query: 227 ELEVAKSLS-----DETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVI----E 275
            LE +         +   K AE    N  K+RF+   +H+LR PL  ILG+S+ +     
Sbjct: 140 TLEESNRQLLQMHEELAAKNAELVRLNEEKNRFVGMAAHDLRNPLGVILGYSDFMLMSHR 199

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
                 L  E   E +  I  S + +L+LIN++LD+S IE G+  L   +  ++ +V   
Sbjct: 200 RGEPSSLLKEGGVEIVNMIRSSSKFMLSLINDLLDVSMIELGKLNLDRKSTDIVQLVESN 259

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
           + +  + A +KN+++  + D  +  V  D   + QV+ NL+SNA+ ++  G  + V V  
Sbjct: 260 VALNMVLAGQKNMKLVVESDEGVPRVEVDAHKLEQVLNNLISNAIHYSPPGTTIRVRVHG 319

Query: 396 TSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
             G          +S+KD GPGIA  ++  +   FG+        E+  GLGL IAQ ++
Sbjct: 320 GRGEDAGGGAEVILSVKDEGPGIAAEDLGKLFRPFGRARTVSTGGERSTGLGLAIAQRVV 379

Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474
             HGG+  + S + +G      LP 
Sbjct: 380 EGHGGRIWVESVVSKGSTFFVALPV 404


>gi|322516693|ref|ZP_08069602.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
 gi|322124726|gb|EFX96164.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
          Length = 446

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +          +I         ++ +I+++L L
Sbjct: 211 FVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPN---FIKVSLDETNRMMRMISDLLAL 267

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML-----QLRAQEKNIEIFQKIDPSLSSVWADEK 366
           SRI+    +L     +    +   +        Q     K  EI +    +   V  D  
Sbjct: 268 SRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTD 327

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
            M +V+ N+L+NA+K++  GG++ V++  T  +   +SI D G GI + ++P +   F +
Sbjct: 328 KMTRVVDNILNNAIKYSPDGGKITVSMKTTDSQ-LIVSISDQGLGIPKKDLPLIFDRFYR 386

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 387 VDKARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|298247425|ref|ZP_06971230.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550084|gb|EFH83950.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 624

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIE---LETMGPLNNETYKEYIGDIHRSGQH 300
           E    K  F+   +HELRTPL  + GF++ +        G    E   E + +I ++   
Sbjct: 378 EAEQLKDEFITIAAHELRTPLAVLKGFAQTLLVQTARGKGAELAEWQVEALQNIDQATSR 437

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +++L +++LD++R++AG   L    + LI +++  +  LQ+  +   + +          
Sbjct: 438 MVDLASDLLDVARLQAGSLLLHFEPVDLIALLKRVVTRLQVTTECHTLTLHIFT--DHFV 495

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V  D++ + QV+ N++ NA+K++ +GG + + V         +S+KD G GI E +   +
Sbjct: 496 VDIDQQRIEQVLTNIIGNAIKYSPLGGVIQIDVDAQQQNTVLVSVKDTGIGIPEQQQGQI 555

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +   A+     G GLGL + + ++  HGG     S   EG       P +
Sbjct: 556 FGRFMRADNALNEGIAGTGLGLYLCRELVERHGGHTWFESMEGEGSTFYLSFPVS 610


>gi|300773122|ref|ZP_07082991.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759293|gb|EFK56120.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 489

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FL+  SHEL+TPL +I  + +++E   +    N    +Y+  +      L +LI ++
Sbjct: 266 KDEFLSIASHELKTPLTSIKAYIQLLERT-LNAEQNSATSKYLSTVQNQVSKLNSLIADL 324

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD+S+I+ G+ ++++   +  +++   +  +    +  NI I ++ D     V  DE  +
Sbjct: 325 LDISKIDNGKLKMNKKLFNFENLLSNVVDTIYHTHENSNIRIEREGDVIDQPVLGDEIRI 384

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV++N L+NA+K++    RV +     + +   + + D G GI E +   +   F +  
Sbjct: 385 EQVLINYLTNAIKYSPDSKRVIIRTEQENTQ-IKVDVTDFGIGIPEHKQKNIFNKFYRVE 443

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            +     QG+G+GL I   I+  H G F I+S+  +G      +P 
Sbjct: 444 ES-SLKFQGLGIGLYICSEIIRQHNGTFGIQSQTGQGSTFYFTIPL 488


>gi|168216704|ref|ZP_02642329.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182381212|gb|EDT78691.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 467

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+EN+ K R    +SHEL+TPL  I    E +      P      +E +  +    + L 
Sbjct: 242 EQENIRK-RLTGDISHELKTPLTNIQSHLEAMIDGIWEPT-----EERLLSVKEEAERLS 295

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L++++  L++ +    +L +  +++ DI+   I      A+ KNI+I  + +    +++
Sbjct: 296 SLVSDMQKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKI--EYEKKNINLY 353

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + Q ++N+LSNA++++  G  + +           ISI+D G GI+E ++  V  
Sbjct: 354 CDKDKITQALVNILSNAIRYSNEGSTIFIE-ERLKDNKVIISIEDQGIGISEEDLKYVFE 412

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            F +   +   A  G G+GL I +SI+++HGG+  + SKL EG +   ILP   +
Sbjct: 413 RFYRADKSRTRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPKEDI 467


>gi|28868988|ref|NP_791607.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852228|gb|AAO55302.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331016879|gb|EGH96935.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 783

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKSSNMRLRESNEELQIARSTALDMANARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGGLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHQDAASGEHRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I+S+   G +  A LP 
Sbjct: 480 GTGLGLALTNNLCEAMHGTLSIQSQSGFGSQFCAELPL 517


>gi|317055320|ref|YP_004103787.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315447589|gb|ADU21153.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 475

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 5/248 (2%)

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
           E E    + ++ +    + +  +   +A++SH+LRTPL  +  ++E+I    +   N   
Sbjct: 233 ETEKLAEVLNDAKNEIRKVSDLRKDLIANISHDLRTPLTMVKAYAEMIRD--LSGDNPVK 290

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E++  I      L NL+N +L+LS++E+G  EL+    S++D + + +   QL  ++ 
Sbjct: 291 RAEHVQVIIDEADRLSNLVNNLLELSKLESGNMELNRRKFSIVDKINDYMTRYQLVIEQN 350

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             ++  + D     V AD   + QVI N ++NA+ +T     + +     + +   I + 
Sbjct: 351 GYDMKYEPDEDR-QVDADPDKLDQVIYNFINNAINYTGDNKVIRIK-QINTEKSVRIEVS 408

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           DNG GIA+  +P V   + +    IK    G GLGL I + I+  H   F +RS+  +G 
Sbjct: 409 DNGKGIAKELLPKVFDRYYR-DAKIKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGS 467

Query: 467 EVIAILPN 474
                +P 
Sbjct: 468 TFWFEIPL 475


>gi|213968683|ref|ZP_03396825.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301385668|ref|ZP_07234086.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061742|ref|ZP_07253283.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302133321|ref|ZP_07259311.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926616|gb|EEB60169.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 783

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 120/278 (43%), Gaps = 10/278 (3%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T HL +    + +   E       L  +       R  A +   A+S FLA MSHE+R
Sbjct: 245 RLTDHLNELENIVSARTNELKSSNMRLRESNEELQIARSTALDMANARSAFLAHMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +G       ++ +   H SG+ L+ L+N+ILD+S+ +AG  E+
Sbjct: 305 TPLNGLLGMLALSLDSPLGA----EQRQQLMIAHDSGKVLVELLNDILDMSKFDAGHLEI 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  ++ +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGGLIEDTANLLSQNAAPSVELTCLIAPDFPAMVTGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           FT   GRV V +              I ++D G GIA+     +   F Q   AI     
Sbjct: 421 FT-RFGRVDVRLTHHQDAASGEHRVRIEVRDTGIGIAQDAQAKIFQPFTQAETAITRQYG 479

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           G GLGL +  ++     G   I S+   G +  A LP 
Sbjct: 480 GTGLGLALTNNLCEAMHGTLSIHSQSGFGSQFCAELPL 517


>gi|138893960|ref|YP_001124413.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265473|gb|ABO65668.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 469

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           EE    + +F+A  SHELRTPL+ +    E + LE    + NE     +  +    + + 
Sbjct: 239 EEAYERQRQFVADASHELRTPLSVVFSSVEALTLEE-DVMKNELAHRLLDRLREELKRIT 297

Query: 303 NLINEILDLSRIEAGR--YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
            L+N++L L+R +A     EL++              ++   A +K I +     P  + 
Sbjct: 298 KLMNDLLTLARADAKHAALELAKQTFDFRPHAERTFQLISELAAKKQITMNFH-APEQAM 356

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           V AD   + Q++  LL NA+K+T  GG V +++     +   +S+KD G GI   +I  +
Sbjct: 357 VTADPDKLTQLLYILLDNAIKYTPEGGNVTLSIRTEPKQFV-LSVKDTGIGIPPEDIGRI 415

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A    + G GLGL IA+ I+  HGG   ++S+L +G E + +LP 
Sbjct: 416 FDRFYRVDKARSRQQGGHGLGLSIAKWIVDAHGGTIHVQSQLGQGTEFLVLLPA 469


>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
 gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
          Length = 1324

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 144/355 (40%), Gaps = 30/355 (8%)

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT---ALSFFTYITYHLFKSNVKILSCQA 219
              +   +   ++   + +  ++ +      +      S    IT    +    +   +A
Sbjct: 557 AAHAVLQLGATVNVPLVKAGRLVAVLFVHFQSAHEWLDSELVLITEVAERIWDAVKRARA 616

Query: 220 EKDDLIAELEVAKSLS--DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFS--- 271
           E     +EL+  +  S  ++ ++RAE   E N AK++F +++SHE R         +   
Sbjct: 617 EAALRESELQRVREQSAREQEQQRAESLAEVNHAKTQFFSNVSHEFR------TPLTLLL 670

Query: 272 ----EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
               + I          +  K+ +   +R+   LL L+N +LD SRIEA R E +     
Sbjct: 671 SPLEDAIAQLGKNKGKQDNVKKQLQLAYRNALRLLKLVNTLLDFSRIEAERIEENYQPTD 730

Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
           L     +   + +   +   ++      P    +W D +   +++LNLLSNA KFT   G
Sbjct: 731 LAAYTTDLASLFRSTIENAGLQFMVNCQPLSKLIWVDREMWEKIVLNLLSNAFKFTFE-G 789

Query: 388 RVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
            + V++               + ++D G GI+  E+P +   F Q       + +G G+G
Sbjct: 790 EIRVSLREEEDNSKTNNKFAVLEVQDTGIGISSEELPHIFERFYQSKSHQGRSYEGSGIG 849

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH--ESTQYKCY 494
           L +   ++  HGG   + S++ +G      LP       I E  H  + +Q K +
Sbjct: 850 LSLVAELVKLHGGTVEVSSQVGKGTTFTITLPTGTEHLPINEQAHLVDQSQDKSF 904



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 126/334 (37%), Gaps = 10/334 (2%)

Query: 144  TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
             +L  + +  L  F L  ++  +     + +   +  +     I      A    +  + 
Sbjct: 997  LILTDIMMPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFS 1056

Query: 204  TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
               L       L    +   + A  E  ++       + E  N     F  S+SH+L+TP
Sbjct: 1057 ARQLLARVKTHLKL-TQMRQVQALNETLEAQVKIRTAQLEAINEELEAFSYSVSHDLQTP 1115

Query: 264  LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            L  I  F E ++   +    + +   Y+  I+ +      +I ++L+ SR      +L  
Sbjct: 1116 LRYISSFVERLQ-GKLDAHADASSLRYLSIINEATSQAHRMIEDLLEFSR--GSNTQLRL 1172

Query: 324  SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
            + +S+  +V+E    L+    ++ IE   +    L  V  D + +R V  NL+SNAVK+T
Sbjct: 1173 TQVSMEQLVQEVRSQLKPEISDRLIEWHIEP---LPEVQGDPQMLRLVWQNLMSNAVKYT 1229

Query: 384  AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
                   +T+            ++DNG G        + + F +          G G+GL
Sbjct: 1230 CNCSTAIITISSRIDDNEIVFFVEDNGAGFDMKYQNRLFSLFQRLHSQE--QFAGTGVGL 1287

Query: 443  PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
               + I+  HGG+    S + +G      LP   
Sbjct: 1288 ANVRRIIHRHGGRVWAESTVNQGARFYFSLPKQE 1321


>gi|298248012|ref|ZP_06971817.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297550671|gb|EFH84537.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 503

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 153/362 (42%), Gaps = 9/362 (2%)

Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
               G  W   TL           ++  S    +   +    +     +   S   V++ 
Sbjct: 141 SPLHGSAWQG-TLTAHNGQAVRVYSVALSDNGTVFGVLQVGESLTQLTSTLQSVAIVLLV 199

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           ++   ++   +    LA      + + T  T  +   ++          D + EL +   
Sbjct: 200 ITPFMLLLGAIGSYWLAKRAFRPVLYLTRTTREIEAGDLHRRVPIPRARDEVHELALT-- 257

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
             +E   R E+    + RF+A  SHELRTP+  I  F++V   E   P   E     + +
Sbjct: 258 -FNEMIGRLEQAFTQQRRFVADASHELRTPVAVIRSFTDVALEE---PRAFEECITALRE 313

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           I+   + L +LIN++L L+R +  +  +    + L  +  +    ++L A E+ I++  +
Sbjct: 314 INAESERLGHLINDLLSLARADEEQMPIEREPVRLDLLTLDVCETMELLAIERGIDLQVQ 373

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                +++  D   + QVI+ ++ NA+ +T  GG+V ++V  T      + ++D G GIA
Sbjct: 374 KIA-PATIQGDTVRLIQVIMGVVDNALTYTNAGGKVTLSVE-THALVARLVVRDTGIGIA 431

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           E +IP +   F +       A +G GLGL IA  ++  HGG   + S++  G      LP
Sbjct: 432 EQDIPHIFERFYRADPVGWRAARGSGLGLSIADWVVRAHGGSIDVESQVGRGTTFTITLP 491

Query: 474 NT 475
             
Sbjct: 492 LA 493


>gi|260854697|ref|YP_003228588.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O26:H11 str. 11368]
 gi|257753346|dbj|BAI24848.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O26:H11 str. 11368]
          Length = 914

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|205372168|ref|ZP_03224983.1| putative sensor-like histidine kinase yclK [Bacillus coahuilensis
           m4-4]
          Length = 451

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 9/304 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++ + T  ++   VL +  A  L   +   T +T  + K   K +     KD++    + 
Sbjct: 157 LITVLTYVLLIGSVLYLGAAYFLVKPIKKLTALTSKIAKGEFKQIESIRSKDEIGELAKS 216

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
              ++ E   + E     +  F++++SH+L++PL +I GF+  ++       + E    Y
Sbjct: 217 FNVMTAE-LTKLET---MRKEFISNVSHDLQSPLTSIRGFAVALKENEF---SKEQQHHY 269

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I +  + L  L   +L LS +E     + +    L   +RE  +  Q +  EK +E+
Sbjct: 270 LTIIQKESERLAKLSENLLKLSVLENMDSLVEKETYRLDQQIREVFLSHQPQWLEKELEL 329

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +    +  + AD   + QV  NLL+N++K++  GG + V V        ++   D G 
Sbjct: 330 DLEGI-QMVEIHADRLQLEQVWHNLLTNSIKYSNKGGNIKVDVKEVQ-GEVHVEFSDTGI 387

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI E ++P +   F     A     QG GLGL I + I+  HGG  LI+S L +G  V  
Sbjct: 388 GIGEKDLPHIFDRFYMVDKARTPTRQGSGLGLAIVKKIIDIHGGDILIKSNLGKGTSVHI 447

Query: 471 ILPN 474
           +LP 
Sbjct: 448 VLPK 451


>gi|191166564|ref|ZP_03028393.1| TMAO reductase system sensor TorS [Escherichia coli B7A]
 gi|190903369|gb|EDV63089.1| TMAO reductase system sensor TorS [Escherichia coli B7A]
          Length = 904

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|218246336|ref|YP_002371707.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|218166814|gb|ACK65551.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
          Length = 389

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 12/269 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSD---ETR----KRAEEENLAKSRFLASMSHELRTPL 264
           V+ +    E+  +  +L  A    +   E R     +A+E N  KS F++ +SH+ R P+
Sbjct: 119 VRSICYAIERKQMAEKLRQANQTLEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPM 178

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N IL  + ++E      L  E    Y   I  + + +  L++EIL L + +AG+ +    
Sbjct: 179 NTILLSAGLLEDSG-DQLTREQQISYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFE 237

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384
            + L ++    +  LQL A   N EI  +     S    DEK +R +I NLL+NA+K++ 
Sbjct: 238 ELDLEELCHRLLHSLQLSAH-HNHEIIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSP 296

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            GG+V+  +           ++D G GI+      +   F +      +   G GLGL I
Sbjct: 297 EGGKVNFDL-IEKENEVIFRVQDQGIGISPEAQKQLFQPFYRADNV--NNIPGTGLGLAI 353

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q  +  H G  L+ S+   G     ILP
Sbjct: 354 VQKCVEAHYGTILVDSQEGIGTTFTVILP 382


>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 873

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 118/296 (39%), Gaps = 28/296 (9%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA--------- 248
            +         + +  I+       D I E + +    ++ R   EE   +         
Sbjct: 432 CWVAVRGEATRRPDGTIIDLHGTIQD-ITERKRSSKELEQYRHHLEELVESRTTELATAR 490

Query: 249 ---------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    KS FLA+MSHE+RTP+N ILG   ++         +    E +  I  SG 
Sbjct: 491 ASAEAATRAKSAFLANMSHEIRTPMNGILGMVHLMRR----AGASPAQLEQLDKIASSGT 546

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL +IN+ILDLS+IEAG+  L +    L ++V   + ++   A  K + +   +     
Sbjct: 547 HLLVIINDILDLSKIEAGKLVLEQENFLLSEVVNTALAVIAGAAAAKGLTVNADVSSIPQ 606

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415
           ++  D   + Q ++N L NA+KFT   G + +                 + D G G+   
Sbjct: 607 ALRGDPTRLSQALVNYLGNALKFTER-GSISLKGSVVEETETDYLLRFEVSDTGIGMTAE 665

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           +   +   F Q   +      G GLGL I Q I    GG+  + S   +G      
Sbjct: 666 QQSHLFIPFAQADSSTTRKFGGTGLGLAINQHIAQMMGGEVGVSSIPGQGSSFWLT 721


>gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 448

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 6/240 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET-MGPLNNETYKEYIGDIHRSGQ 299
           R E+    +  F+A++SHELRTPL +I G+ E +  +  +G  N  + ++++G I R+  
Sbjct: 209 RIEQVERTQREFVANVSHELRTPLTSIAGYVETLLEDPRLGVPNKGSARDFLGSIARNAA 268

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            +  L  ++L L+RIE+  +++  + +    ++ + +       +EK   +      +  
Sbjct: 269 RMTRLTEDLLALARIESKEHQVKPAPVDTNTLIHDALDATSGFIREKEAVMDF-GTLTSE 327

Query: 360 SVWADEKGMRQVILNLLSNAVKF--TAIGGRVHVTV--GWTSGRGQYISIKDNGPGIAEG 415
            ++AD   + QV+ NL+ NAV +  +A G R+ + V     +      SI DNGPGIA  
Sbjct: 328 MIYADAGAIVQVLSNLIENAVNYGSSANGARIVIAVDASRDTPGMMQFSITDNGPGIASE 387

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            +  V   F +   A      G GLGL IA++I+  HGG   + S+L +G      LP  
Sbjct: 388 HLERVFERFYRVDQARAIGTHGTGLGLAIARNIVEQHGGTIWVESRLGKGSRFSFTLPLA 447


>gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 1066

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 145/336 (43%), Gaps = 20/336 (5%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVA--------LSTQAIMSMHVLDISLAGMLATALSFFT 201
           S + +S   +   +  +  PV +A        +    + S     + +  +L   +    
Sbjct: 451 SAAPISGNPVLQELIRTRAPVAIADIEQRPDSMVMLPLRSPSKALLVVPLLLDGDIIGSI 510

Query: 202 YI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +       H   S + ++   A +  L  +       + +  +R  E +  K+ F  ++
Sbjct: 511 SLRQNHQVRHWQPSEIDMVLLVAAQAALAVQQARLYQKTRQQAERLLEADRLKTEFFQNV 570

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE RTPL  ++G  E +  +      ++          R+ + LL L+N++LDL R +A
Sbjct: 571 SHEFRTPLTLMIGPLETVVNQQQDLSLDQ-----AKIALRNSRRLLRLVNQLLDLQRFDA 625

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GR + S     L++  ++ +   +     K I +   +  S   ++ D +   +V+ NLL
Sbjct: 626 GRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQ-SCPQLYLDLERFDKVLYNLL 684

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+KFT   G + V++    G    + +KD G GI + ++P +   F Q   +   + +
Sbjct: 685 SNAMKFTPTDGTITVSLQP-EGNYCRLMVKDTGIGIKQEQLPHLFERFRQAEGSANRSFE 743

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++  H G+  + S+  +G      L
Sbjct: 744 GSGLGLALVKELVELHHGRITVESEYGQGTTFTVWL 779


>gi|218700495|ref|YP_002408124.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI39]
 gi|218370481|emb|CAR18288.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli IAI39]
          Length = 914

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMISLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++           T ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----TQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q      
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV----S 620

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           S   G GLGL I+  +     G+    S    G      LP       +P+  +++
Sbjct: 621 SKRGGTGLGLTISSRLAQAMDGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|73542428|ref|YP_296948.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72119841|gb|AAZ62104.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 611

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 162/456 (35%), Gaps = 20/456 (4%)

Query: 22  HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF--TQNPIFPMWSLIT 79
            +     +++D +     + +      S  +   +L    I  ++    +     W  + 
Sbjct: 22  RILPPPGAQLDIETRAKLMAIVHKASPSAAVAAVLLPALTILAFWNSADHAALLGWGAVM 81

Query: 80  LAVYAANLSLGKKVMN---SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136
           L + A  L           S  +      W   +       G+ W    ++   T +  +
Sbjct: 82  LLLLAGGLWFYLGYQRDGASMSRSAHTRKWWGNMRALAFLTGVTWGSSAVLHMYTGSAVF 141

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
            ++    +L +    +     +     +     +V  L           +I+  G     
Sbjct: 142 SSVLYLLSLGVLAGGAVSQAPVPSNLAYAGIPILVPNLLMA--------EIAFPGHGIYV 193

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
                     L +  + +         L  +         E ++RA   +  KSRFLA+ 
Sbjct: 194 QLLLVIYAMMLGRHALGLQGTLVRAIQLEGDSRRLAKQFQEEKERALHASEEKSRFLAAA 253

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SH+LR P++A++   E +       + +      +  +    Q +  L   +LDLS++E 
Sbjct: 254 SHDLRQPVHALVMLVEALRARNQSTVLHP----LVEQVAAGTQTIDLLFRSLLDLSKLEG 309

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
            +   +     L  ++R+ +      A+E  + +  ++   L    A+   +R+ + NL+
Sbjct: 310 RKVLPTLEPCELSALIRDVMSQFAADARESGLTLTPRVPDEL-FAMAEPVLLRRALFNLV 368

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
            NA+++T  GG   +       +   + + D G GI    +P + + + Q     +   Q
Sbjct: 369 QNALRYTKRGG--VLVTARQRRKHVRLEVWDTGAGILPDHLPDIFSPYYQVHNPQRDPSQ 426

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G+GLGL I +  +    G + +RS   +G      L
Sbjct: 427 GLGLGLAIFKECVRLMRGTYGVRSVPGKGSVFWFAL 462


>gi|91774843|ref|YP_544599.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91708830|gb|ABE48758.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 442

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 164/439 (37%), Gaps = 13/439 (2%)

Query: 60  ANIGTWFTQNPIFPMWSL--ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117
           A      T      +W+      A+ A +  L   + +    +  +  W     +  + +
Sbjct: 8   ALWLGLATLLTCLIIWAFTDAITALLAFSAFLLLYLASHLYWLHRLLQWFRKPELNTMPV 67

Query: 118 GLCW---TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174
           G          +               SA      + SAL + ++               
Sbjct: 68  GSGIWQDVFSAIYYEKRRHHRSQAQISSALDRFRHAASALPDGVVLLNGNDQIEWCNPTA 127

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE----KDDLIAELEV 230
            +Q  +SM          L     F  Y+    +   +K+ S +      +  L+     
Sbjct: 128 ESQLGLSMRQDAGQPITYLVRPTDFIQYLQAQNYSEPIKLKSWRTIGATLEIQLVPFGIN 187

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            K L        E+    +  F+A++SHELRTPL  + GF E +    M     E+ + Y
Sbjct: 188 QKLLISRDVSHMEKLETMRRDFIANVSHELRTPLTVVGGFLETLMD--MEGAVPESTRAY 245

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
            G +      +  LI ++L LS++E       E+ I L  ++   +    +   +   EI
Sbjct: 246 FGMMQEQTGRMRRLIEDLLTLSQLENSPEAPQETEIDLGTLLNMLLHE-GVSLSQGKHEI 304

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +       +    + +   + NL+SNAV++T  GG++++ + +  G     S++D G 
Sbjct: 305 TLEPVEPGLFIKGATEELHSALGNLVSNAVRYTPQGGKINLKL-FLRGNDIVFSVRDTGI 363

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI +  I  +   F +   +      G GLGL I + I+  H G+  I S+  +G    A
Sbjct: 364 GIEQQHIDRLTERFYRVDRSRSRETGGTGLGLSIVKHILTRHQGRLEIESEAGKGSIFSA 423

Query: 471 ILPNTRVLNFIPEDNHEST 489
           +LP  R++   P++   S 
Sbjct: 424 VLPQARLIRKTPQEAQASA 442


>gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
 gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
          Length = 1353

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 123/307 (40%), Gaps = 26/307 (8%)

Query: 167  FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              P V+ +    I       I L          F +  + + KS    L    E+ D   
Sbjct: 771  TIPTVLEIIVLPIWYKTWWAILLFLATFIGFITFVFRFFWMRKSMEAELEI--ERRD--- 825

Query: 227  ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                        ++  EE N  K RF  ++SHELRTPL  IL   +    + +  +++  
Sbjct: 826  ------------KEHQEEINQMKMRFFINISHELRTPLTLILAPLQ----DIINKISDRW 869

Query: 287  YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             +  +  I R+   LL+L+N+++D  R E G +EL     +   +++E  +     A+ K
Sbjct: 870  TRNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKAKKANAYQLIQENFLFYDKLARHK 929

Query: 347  NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
             I      D     V  D   +  ++ NLLSNA K+T  G  + VT+         + + 
Sbjct: 930  KITYTLHSDLEDKEVLFDPNYLELIVNNLLSNAFKYTESGQSITVTLK-EENNYLVLQVS 988

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            D G GI   +   +   F Q      S   G G+GL + Q ++  H G   + S+  +G 
Sbjct: 989  DTGIGIPINKQGKIFERFYQIE----SEHVGSGIGLSLIQRLVELHHGHIELDSEEGKGS 1044

Query: 467  EVIAILP 473
                 LP
Sbjct: 1045 TFSVYLP 1051


>gi|161986555|ref|YP_309969.2| hybrid sensory histidine kinase TorS [Shigella sonnei Ss046]
          Length = 914

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGQLMGAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
 gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
          Length = 784

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 7/221 (3%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           ++SHE+RTP+N ++G ++++    +    +E   E    I  SG+ LL++IN+ILD S++
Sbjct: 401 TISHEIRTPMNGVIGMADLLVKSKL----DEEQLELTKTIIESGESLLHIINDILDFSKL 456

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVIL 373
            +G+ ELS  AIS+ D++   I  L+  A+ K+I +    +   +  +  D   +RQ++L
Sbjct: 457 GSGKLELSPQAISVPDVISRAIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVL 516

Query: 374 NLLSNAVKFTAIGG-RVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           NL+ NA+KFT  GG  + V +   S      I+I D G GI    +  +  +F Q     
Sbjct: 517 NLVGNAIKFTDTGGVTIDVLMQEVSNNVEVTINISDTGIGIPADALHRIFENFTQADGDT 576

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                G GLGL I++ +    GG  ++ S + EG      L
Sbjct: 577 TRKYGGTGLGLSISKRLAKQMGGDIVVTSTVGEGSCFQVKL 617


>gi|304415494|ref|ZP_07396133.1| putative two-component sensor/regulator [Candidatus Regiella
           insecticola LSR1]
 gi|304282653|gb|EFL91177.1| putative two-component sensor/regulator [Candidatus Regiella
           insecticola LSR1]
          Length = 886

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 146/367 (39%), Gaps = 17/367 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L L     +  E               +  L+  +     +    P+   ++
Sbjct: 271 LNGPRWQQLVLYPRIGFAWEAAKPALHQLPFALAILVLLTLVLFFLLRYYLAIPLSNFVN 330

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    +D  L       L        HL  +         + D L  +++      
Sbjct: 331 IIGATGPDAMDARLPATRTDELGHIARAYNHLLDT------LHEQYDTLELKVKERTLEL 384

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            + ++ AE+ +  KS  L ++SHE+RTPLN  LG  E+++   + P              
Sbjct: 385 AQAKQEAEQASRRKSLHLTTISHEIRTPLNGSLGAIELLQNTPLTP----AQLRLADTAR 440

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                LL +IN++LD SRIE+G+  L+    +L+ ++ + ++ +Q  A  K++ +   + 
Sbjct: 441 LCSFSLLGIINDLLDFSRIESGQMTLALEETALLPLLDQAMLAIQSSAMTKSLTLCTHVG 500

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            ++   +  D   +RQ+++NLL NAVKFT   G + + V     +  Y  ++D G GI  
Sbjct: 501 ENVPLKLQLDALRLRQILINLLGNAVKFT-QSGAITLRVERKKDK-LYFIVQDTGCGIDA 558

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
                +   F Q      S  QG GLGL IA ++     G   ++S  + G      LP 
Sbjct: 559 ENQRKIFEPFFQ----TSSHGQGTGLGLAIACNLAKLMQGTLQLQSTPKAGTCFSLQLPL 614

Query: 475 TRVLNFI 481
              L+  
Sbjct: 615 NETLSAP 621


>gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 778

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|218461845|ref|ZP_03501936.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 295

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/280 (48%), Positives = 186/280 (66%)

Query: 3   RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62
           RSR ++ K V   +  T + L   + S   FDR+++ +++ S+ + + I+PLFV+++  +
Sbjct: 16  RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYIASMLQGATIMPLFVVIITAL 75

Query: 63  GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122
           G +FTQ+     W+L+TL  +  N+ L ++    +I       WR  LL GQ  +G CW 
Sbjct: 76  GVYFTQDTRLLFWALLTLTCHTGNILLARRARRQEITAESARKWRRLLLSGQFLVGCCWA 135

Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182
           +  L    T  P    +YK ATLLIALS++A+SNFML  AV ++F P V+AL  ++ +S 
Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 195

Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242
            +L+ISL G+    L FF YI+  LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA
Sbjct: 196 DLLEISLTGLFTATLVFFNYISDGLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           EE  LAKSRF ASMSHELRTPLNAILGFSEV+  E MGPL
Sbjct: 256 EEATLAKSRFFASMSHELRTPLNAILGFSEVMSAEVMGPL 295


>gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
 gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
          Length = 744

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  KS  +A++SHELRTPLN I+G S ++    +    +   +EY+  I+ S   L 
Sbjct: 235 EKNSRDKSTLMATISHELRTPLNGIIGLSRILLEGEL----SAQQREYLKTINISAVSLG 290

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++ ++I+DL +I++ R EL  S +    ++        L A++K I+   + D +L   V
Sbjct: 291 HIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFV 350

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + Q++ NL++NAVKFT  GG + + V           +KD+G GI + E   + 
Sbjct: 351 CVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIF 410

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   +     QG G+GL I++ I    GG   + S+L +G     I+
Sbjct: 411 AMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLII 461


>gi|30261573|ref|NP_843950.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47777938|ref|YP_018121.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184404|ref|YP_027656.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|165872663|ref|ZP_02217293.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167634330|ref|ZP_02392651.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|167641635|ref|ZP_02399881.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|170689250|ref|ZP_02880446.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|170706277|ref|ZP_02896738.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|177651395|ref|ZP_02934184.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190568132|ref|ZP_03021042.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227815676|ref|YP_002815685.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229601315|ref|YP_002865983.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
 gi|254682359|ref|ZP_05146220.1| sensor histidine kinase ResE [Bacillus anthracis str. CNEVA-9066]
 gi|254733774|ref|ZP_05191488.1| sensor histidine kinase ResE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740535|ref|ZP_05198226.1| sensor histidine kinase ResE [Bacillus anthracis str. Kruger B]
 gi|254753924|ref|ZP_05205959.1| sensor histidine kinase ResE [Bacillus anthracis str. Vollum]
 gi|254759020|ref|ZP_05211047.1| sensor histidine kinase ResE [Bacillus anthracis str. Australia 94]
 gi|30255427|gb|AAP25436.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47551643|gb|AAT30596.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178331|gb|AAT53707.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|164711607|gb|EDR17154.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167510428|gb|EDR85828.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|167530218|gb|EDR92944.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|170128811|gb|EDS97677.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|170666805|gb|EDT17572.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|172082673|gb|EDT67736.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190560866|gb|EDV14841.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227002441|gb|ACP12184.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229265723|gb|ACQ47360.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
          Length = 591

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K + + 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVALT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                S+     D   M QV+ NL+ NA++ T  GG V + +  T   G    ++D+G G
Sbjct: 466 VDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVID-TKNNGLIFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I E +IP +   F +   A                    IA++I+  HGG+  + S + E
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVVGE 578

Query: 465 GVEVIAILPNT 475
           G      LPN 
Sbjct: 579 GTTFSVYLPNR 589


>gi|310657555|ref|YP_003935276.1| sensor histidine kinase [Clostridium sticklandii DSM 519]
 gi|308824333|emb|CBH20371.1| sensor histidine kinase [Clostridium sticklandii]
          Length = 474

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 12/303 (3%)

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
           +AL    I+   +L + ++  +   +     +   + + N    + +   D++    E  
Sbjct: 181 LALGATVIIFFMLLALIISKSIVNPIMKLNVVAKSMAEGNFDQKAKKIYDDEIGQLTETM 240

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +++E  K     +  K  F++S+SHELRTPL +I G+SE + +E      NE     +
Sbjct: 241 NYMAEEILK----TDKIKKDFISSISHELRTPLTSIKGWSETLMMEE-SVSQNEALGMGL 295

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I      L +++ E+LD SR+E+ R ++ +  I+   ++ +    LQ RA   +I + 
Sbjct: 296 GIISGEADRLKDMVEELLDFSRLESSRMKVVKRKINPKHVLEQVYRQLQPRAA--HITLS 353

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                  + +  DE  +RQV +NLL+NA+KFT  GG V +       +   I   D G G
Sbjct: 354 CNKIGKDTMIMGDENRLRQVFINLLANAIKFTPAGGSVQIEAEGQDEQ-IIIRFIDTGLG 412

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I++ ++P V   F +G+  +     G GLGL I   I+  H  +F I SKL EG  V  I
Sbjct: 413 ISKEDLPNVTQKFYKGNQTMA----GSGLGLSIVDEILKLHDAKFYIDSKLGEGTTVTVI 468

Query: 472 LPN 474
           +P 
Sbjct: 469 IPA 471


>gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
 gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
          Length = 950

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 18/257 (7%)

Query: 238 TRKRAEEENLA-----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
            R R E+               KS FLA++SHELRTPL  I+G  ++++ + +    +  
Sbjct: 449 ARVRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVD-- 506

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +  ++ S   LL +I++ILD S+IE+ + ++     S  +++   +         K
Sbjct: 507 --SLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNYLSLVVRK 564

Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
            + ++  I+  +  ++  D   ++QVI NLL+NA+KFT   G + +   +         +
Sbjct: 565 RLALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-YEHEGYLAFRV 622

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
           +D G GI   E+  +   F Q    ++   QG GLGL I + ++    G   + S+   G
Sbjct: 623 RDTGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMG 682

Query: 466 VEVIAILPNTRVLNFIP 482
            + +  +P        P
Sbjct: 683 SQFVVRIPIYAGHLAAP 699


>gi|254446050|ref|ZP_05059526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
 gi|198260358|gb|EDY84666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
          Length = 1055

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 134/327 (40%), Gaps = 13/327 (3%)

Query: 168  FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
                  +      S   + + + G     ++F    T  L  S  K L  Q        E
Sbjct: 736  ALAQFTILPPLYRSYWAIALYIVGGTLL-IAFIAIATRRL--SEAKNLHLQQLVKLRTRE 792

Query: 228  LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
            L +A     +   RAE    AKS FLA++SHE+RTPLN ILG + ++  +   P +    
Sbjct: 793  LGMANDELQQLVSRAESATAAKSSFLANVSHEMRTPLNQILGPAALLLSDEQDPDD---- 848

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            KE +  I+ + + +L ++ ++   S   +G  +L  +   +  +V +     +  A E+ 
Sbjct: 849  KEMLASINHAAERMLQMVEKLTAFSENASGSAQLEANTFDIYSLVDDLYQKYKPEADERR 908

Query: 348  IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402
            I++ + ID  L   W  D + +RQ +  LL NA KFT   G + +    +          
Sbjct: 909  IDLTKHIDLKLGHYWSGDIRRIRQALNILLENAFKFTHS-GSIGLEASLSDSSKNYSKVK 967

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
              + D G GI       +   F Q   A K+  +G G+GL + +  +A   G+  + S  
Sbjct: 968  FEVSDTGIGINAKMRDKIFEPFSQLPSAHKAKNEGTGIGLALCRQTVAALNGEVEVESIE 1027

Query: 463  REGVEVIAILPNTRVLNFIPEDNHEST 489
              G     I+P    L    ++  E  
Sbjct: 1028 GLGTVFRVIVPLNSKLASQSDETPEKA 1054


>gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 778

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTV----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|117924515|ref|YP_865132.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608271|gb|ABK43726.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 944

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 15/327 (4%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
                   +   +S   IM    L   +   ++  +   T     L +    I      +
Sbjct: 295 IAVHETLQITRGVSLLGIMLGIFLAWRIGRNISQPIHAMTVALTGLARGKQDIEIPGRGR 354

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
            D I  + +A  +           +  KS FLA+MSHELRTPLN++L  ++++     G 
Sbjct: 355 SDEIGAMAMAADVFKVKAHELANASRYKSEFLANMSHELRTPLNSLLILAKMLSNNEEGN 414

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L+ E   E    I+ SG+ LL+LIN+ILDLS++EAGR +L   +  L  + +      + 
Sbjct: 415 LS-EDQVESAQVIYESGRDLLHLINDILDLSKVEAGRMDLYVESRPLQALPQMLERTFKP 473

Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----- 395
            AQ+K++     I   L   +  D     QV+ N LSNA KFT   G V V +       
Sbjct: 474 VAQQKSLAFHWSIADDLPKELATDWPKAEQVVRNFLSNAFKFT-ESGHVTVAIHKPQAHR 532

Query: 396 -------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
                  T      IS+ D+G GIAE +   +  +F Q       A  G GLGL I++  
Sbjct: 533 IFMNSDLTHKNALMISVTDSGIGIAEDKRELIFEAFRQADGTTSRAYGGTGLGLTISRKF 592

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475
            A  GG+  + S   +G     ILP  
Sbjct: 593 AALLGGEIQVESAPGKGSCFTLILPLE 619


>gi|309388886|gb|ADO76766.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 521

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
            +  +  + T  +   N KIL   +   D+  ++++ K + ++ +++ E  N  ++ F A
Sbjct: 212 GSELYCEWNTALIKDRNDKILEIISIAQDISEKIKIQKRIKNQ-KEKLE-YNQLRTIFFA 269

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNE-TYKEYIGDIHRSGQHLLNLINEILDLSR 313
           ++SHEL+TPLN I    +++E +     + E  + +Y+  I  +G  LL L+N ++D+++
Sbjct: 270 NISHELKTPLNLIFSSLQILEYKLASEDHLENKFDKYLSSIKNNGFRLLRLVNNLIDITK 329

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           I    + L +    +I +V+  +       + KN +   + +     +  D   + +VIL
Sbjct: 330 IGVNTFCLHKGNFDIIKLVKSIVKSTADYLETKNRKFIFQSNLESQIIACDPFNLERVIL 389

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NL+SNAVKFT  G  + + +         ISIKD G GI +     +   F Q   +   
Sbjct: 390 NLISNAVKFTEAGDEILLKIEKIE-NEIVISIKDTGIGIKKENQAIIFEEFRQVDQSFNK 448

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
             +G G+GL +A+SI+  HGG+  + S+     +    LP  ++     E ++ S  
Sbjct: 449 KREGSGIGLSLAKSIVEMHGGRIELTSEYGVYSKFSIYLPIEKIAAKNLETDNFSAD 505


>gi|228927050|ref|ZP_04090116.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121536|ref|ZP_04250763.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201]
 gi|228662000|gb|EEL17613.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201]
 gi|228832785|gb|EEM78356.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 293

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D+G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDSGIGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 235 IFERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|158321190|ref|YP_001513697.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158141389|gb|ABW19701.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 474

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 7/331 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           + +++I  +  F++  +       V  A+   A++S+    +         L     IT 
Sbjct: 149 IGSITIGQVGPFLISESDIEFTKGVNNAILYGAMISIAATILLGVYSSKIFLVPILRITQ 208

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                    L  +      I EL       +   K  +E+ L + R  + +SHELRTPL 
Sbjct: 209 SANDIREGKLDTEVMTSGNIIELRDLSVSINHLSKSLKEQELLRKRLTSDISHELRTPLT 268

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
            +    E I      P  ++     +         L+ L++E+  L+ IE  + +L    
Sbjct: 269 ILQSHIEAISDGVWEPTQDK-----LEICKAEVHRLIKLVDELKHLTDIENHQLDLEIHR 323

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             L   + E +   Q + QEK + + + I  ++  ++ D+  +RQ ++NL+SNA KFT+ 
Sbjct: 324 YCLSKDLNEVVTSFQYQFQEKGVLLNRNIKENI-EIYGDKNKIRQAVVNLISNAFKFTSS 382

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG V V +   +     I +KD G GI + +IP V   F +G  +      G G+GL I 
Sbjct: 383 GGTVTVEL-LENQDEVEIVVKDTGMGIDQQDIPYVFERFYRGDASRNRKTGGAGIGLSIT 441

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           ++++  HGG  ++ S+  +G + I  LP  +
Sbjct: 442 KTLVEAHGGNIIVESEKNKGTKFIIRLPKEK 472


>gi|330720730|gb|EGG98957.1| hypothetical protein imdm_1687 [gamma proteobacterium IMCC2047]
          Length = 512

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 13/251 (5%)

Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307
            K+ FLA+MSHELRTP++ +LG   +I          E   +Y+  +      LL ++++
Sbjct: 1   MKTDFLATMSHELRTPMSGLLGVINLIRDT----EPTEKQDKYLDTLEVISNTLLEILDD 56

Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEK 366
           IL  S+IEAG+  ++ +   L  +V + + +L+  A +KNI +   I+  +  + + D  
Sbjct: 57  ILGYSQIEAGKLVVANADFDLHTLVEDMVSVLKPVADKKNIYLSADIEADVPRMLYGDAG 116

Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVL 421
            +RQ++LN++ N +KFT  GG V + V                I+D G GI +     V 
Sbjct: 117 KLRQILLNIIGNGIKFTREGG-VRLNVKAQPDTHGDDLRLLFRIEDTGIGIPKKLQKNVF 175

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLN 479
            +F QG I+I     G GLGL I + ++    G+    S    G      LP   +R+++
Sbjct: 176 EAFNQGMISISQQYGGTGLGLAICKRLVTLLEGEVSCTSTPGVGSVFYFELPFKQSRLID 235

Query: 480 FIPEDNHESTQ 490
              ++   +T+
Sbjct: 236 ARTDEYSSATE 246


>gi|297520345|ref|ZP_06938731.1| hybrid sensory histidine kinase TorS [Escherichia coli OP50]
          Length = 619

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 18/351 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 278 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 337

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 338 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 397

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 398 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 453

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 454 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 513

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 514 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 570

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
               G GLGL I+  +    GG+    S    G      LP       +P+
Sbjct: 571 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPK 618


>gi|295699318|ref|YP_003607211.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1002]
 gi|295438531|gb|ADG17700.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1002]
          Length = 631

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 173/452 (38%), Gaps = 23/452 (5%)

Query: 24  GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-- 80
               P +   D +++  L+ +             +LVA         P+F    +     
Sbjct: 1   MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVAIYWPHVPALPLFIACFVFYALA 60

Query: 81  -AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139
                A     ++           +++   L    +  G  + +         +P+    
Sbjct: 61  NCAGLALWICNRRYPQLVSPRD--WIYLHALRGVLLYSGPGFAVWFAF----QSPQTDLP 114

Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199
                LL+ L+     +       F +  P ++  S       H  D ++  ++      
Sbjct: 115 LLHTVLLVTLAAGVFMSNGFDLLNFSTSIPFLLLPSIVLHFGSHTFDRTILAIVLAFFFC 174

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +    ++   + +         +AE   A+      ++ AEE +LAK+RF A+ SH+
Sbjct: 175 AINVYAMSYRKLFRQVVQARVDQQYLAESLAAQ------KRVAEEASLAKTRFFAAASHD 228

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
           LR PL+AI   +  +            + +  G I  + + L  L N++LDL+R+E+G  
Sbjct: 229 LRQPLHAIGLLAASLND---PAATPAQHAKTAGHIVYNVEALNQLFNQVLDLARLESGVT 285

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
           ++      L ++        + +A  K + +     P+   V+ D   + +V+ NLLSNA
Sbjct: 286 QVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTSMVVYDDPVLLERVLSNLLSNA 343

Query: 380 VKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
           V++T   G + +       + G YI ++D+G GIA  E   +   F Q     + A QG 
Sbjct: 344 VRYTEQ-GAIWLGFRRAGRQKGGYIEVRDSGVGIAPEEHERIFEEFYQVENPQRDARQGH 402

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GLGLP  + ++   GG+  +RS    G     
Sbjct: 403 GLGLPTVRRLVGLLGGELQLRSAPGRGSVFRF 434


>gi|210610306|ref|ZP_03288335.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787]
 gi|210152536|gb|EEA83542.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787]
          Length = 516

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 149/323 (46%), Gaps = 15/323 (4%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-- 227
           +V+A+    + +   L + +   +   L      T ++   N+     + E DD I +  
Sbjct: 202 MVIAVVFILMFTALFLILWIYRGIVIPLGRMKIATQNIKDGNLD-FELEIEADDEIGQLC 260

Query: 228 ---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
               E+ K L D   ++ E +  +K   ++++SH+L+TP+ AI G+ E I          
Sbjct: 261 RDFEEMRKRLKDTAEEKVEYDRKSK-ELISNISHDLKTPITAIKGYVEGIMDGV--ADTP 317

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E    YI  I+     +  LINE+   S+I++ R   + S + + D   +C   L +  +
Sbjct: 318 EKMDRYIKTIYNKANEMDLLINELTLYSKIDSNRIPYNFSTVLVNDYFDDCAEDLAMELE 377

Query: 345 EKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQY 402
            + IE  +     S   + AD + +++VI N++SN+ K+     G++++ V    G    
Sbjct: 378 ARGIEFGYFNYVESDVKIIADVEQLKRVINNIVSNSEKYMDKEHGKINLRVK-DVGDFVQ 436

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           I ++DNG GI   E+P +   F +   +  S++ G G+GL I + I+  HGG+    SK 
Sbjct: 437 IELEDNGKGIGAKELPHIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSKE 496

Query: 463 REGVEVIAILPNTRVLNFIPEDN 485
             G  +  ++   R    +P + 
Sbjct: 497 GTGTVMYFVI---RKYQEVPVNE 516


>gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
 gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 123/307 (40%), Gaps = 10/307 (3%)

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
           T   +   +  ++  G+      +   I     +                  ++    L 
Sbjct: 167 TLLWIIQILYILTYLGVALLFFLYIRCIRRPFQEITKGASEFANGNLSYQIPVDSENELG 226

Query: 236 DETRK---RAEEENL---AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
              +     A++ N     + +F++++SH+ R+PL +I G+ E +     G +  E  ++
Sbjct: 227 YLAKNLNYMADKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMID---GTIPVEMQEK 283

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I    + L  L   +L L+ ++  +  L      +  +++      +     +NI 
Sbjct: 284 YLKIISYEAERLEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNIL 343

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +   +        AD + ++QV+ NLLSNA+KF+     + +          ++S+KD+G
Sbjct: 344 LELILSGKELMAQADMEQIQQVLYNLLSNAIKFSPDNSTITLETT-EKNGKIFVSVKDHG 402

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI +  +  +   F +   +    ++G GLGL I + I+  HG    + S    G E I
Sbjct: 403 IGIPKASLQKIWERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVISTEGVGTEFI 462

Query: 470 AILPNTR 476
             L   +
Sbjct: 463 FTLEKAK 469


>gi|311748276|ref|ZP_07722061.1| PAS domain-containing protein [Algoriphagus sp. PR1]
 gi|126576771|gb|EAZ81019.1| PAS domain-containing protein [Algoriphagus sp. PR1]
          Length = 1140

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 5/252 (1%)

Query: 223  DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
              I+  +  +    + +++AE+ N  K+  L+++SHE+RTPLN ILG +E I    M   
Sbjct: 893  RDISSKKAIEQKMRDAKEKAEQANRYKTSMLSNISHEIRTPLNGILGGTEHIM---MMNQ 949

Query: 283  NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +N      +  I +SG+ LL+ IN ILD+++IEA + ++  S   + + ++  I  L+  
Sbjct: 950  DNPILLSQLDIIQQSGERLLSTINSILDMAKIEANKMQVVYSEADINEFLKSVIAPLKNL 1009

Query: 343  AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
            A +K +++  +          D++ +  +I NL+SNA+K+T  GG ++V V         
Sbjct: 1010 ALKKGLKLHTEFLQESFKGNIDKRFLEMIINNLVSNAIKYTDQGG-INVAVDKKKNN-LL 1067

Query: 403  ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
            IS++D+G G++E  +      F Q S       +G GLGL I +S+MA   G+  I+S  
Sbjct: 1068 ISVEDSGVGMSEEFLNKAFQPFEQESTGNDRLYEGTGLGLNITKSLMALLNGEIHIQSVK 1127

Query: 463  REGVEVIAILPN 474
              G  V   +P 
Sbjct: 1128 NSGTLVTLEIPL 1139


>gi|320664373|gb|EFX31524.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 904

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 655

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            R+  E     K  F++ +SHELRTPL +I G   +     +   + +  +  +     +
Sbjct: 424 ERQAME---KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPQKSERMLDIAMFN 479

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L+ L+N+ILDL R+ +G+  + +  +++ D++ +    +   A++  +++     P 
Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVV--PL 537

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   + Q++ NLLSN+++F+    R+  T          IS++D G GI   +I
Sbjct: 538 EFKVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENH-VLISVRDRGRGIPPDKI 596

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            T+   F Q   +      G GLGL I +SI+  HGG+    S   +G      LP
Sbjct: 597 ETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLP 652


>gi|148252119|ref|YP_001236704.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146404292|gb|ABQ32798.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 850

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 13/247 (5%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS F+A MSHE+RTP+NA+LG +  +    + P      +  +  IH +G +LL ++N+I
Sbjct: 329 KSTFVAMMSHEIRTPMNAVLGLATTLLETNLDP----EQRRSVVAIHNAGDNLLEILNDI 384

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKG 367
           LD S++E+G+  L + A S   +V   + ++  RA  K++++    DP+   ++  D   
Sbjct: 385 LDFSKLESGQLSLEDIAFSAEALVHNTLSIIGPRASAKDLKLRSVNDPAVPPALVGDAGR 444

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423
           +RQ++LNL+SNAVKFTA  G V +T    +          ++ D G GIA  +I ++  +
Sbjct: 445 IRQILLNLVSNAVKFTAA-GEVVITTRCLAKDDAKATVEWTVTDTGIGIAADKIGSLFAN 503

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFI 481
           F Q   +I     G GLGL I + +    GG+  + S L  G        LP    +  +
Sbjct: 504 FVQADNSISRRFGGSGLGLAICKRLTEQMGGEIDVTSTLGRGSTFSFRLTLPIAEAV-AV 562

Query: 482 PEDNHES 488
           PE N +S
Sbjct: 563 PEQNDDS 569


>gi|121535009|ref|ZP_01666827.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121306422|gb|EAX47346.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 375

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 12/332 (3%)

Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203
            ++   +++A+        +    + + VA     ++   V+   LA  +A  +      
Sbjct: 47  MMMNHGNMAAMMGAPERQFLISLRYSLAVAAGVMLLI-GAVVSYYLARSIAAPVIDLNRA 105

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263
              +   N+ +      +D++        +++   + +A    + + RFLA ++HELRTP
Sbjct: 106 VNDVAAGNLDVAVAVDRQDEVGQLAAAFNAMT--AKLKANT--VLRQRFLAGVAHELRTP 161

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           L  +    E I    + P      +E I  +      L  ++ E+ DLS +E G+     
Sbjct: 162 LTILKANLEGIADGVIVPD-----QEQIKSLTEEVDRLTKMVGELRDLSLLETGQLTPDY 216

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
           + I L   +R+ I      A EKN+ +  KID SL  +WAD   ++Q++ NLL NA+++T
Sbjct: 217 TEIDLHATLRQVIQKSAPLAAEKNLALSLKIDDSLPRIWADAGMLQQMVYNLLLNAIRYT 276

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
              G V VT     G    I + D G GIA  +I  +   F +   A      G GLGL 
Sbjct: 277 PA-GSVTVTAK-GDGTAVTIEVIDTGIGIAADDIEHIFDYFYRVDPARTKQSGGTGLGLA 334

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           + + +   HGGQ    S   +G      LP  
Sbjct: 335 LVKQMALAHGGQVYATSTPGQGSTFTLKLPLR 366


>gi|269960017|ref|ZP_06174394.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835316|gb|EEZ89398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1200

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 193 LATALSFFTYITYHLFKSNV----KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           + T L       Y + + ++    +         D I EL+  +     +  +A +   A
Sbjct: 608 IVTTLCSLGKKHYRVRRQSLLHPEEGTRFHMTVFDDITELKKKECALKASNLKAMQAIEA 667

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           +  FLA +SHELRTP+ A+LG  E++E +    L+    KE +     S + L   +N+I
Sbjct: 668 REHFLAVISHELRTPIAAMLGLMELLEQD----LDRPESKELLKSAMLSAERLQLHVNDI 723

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367
           LD S+++A + +L   + ++ + +   +   +   ++K +       P+  + V  D   
Sbjct: 724 LDFSKVDANQLQLDVHSGNVYEELGSSLRSFEKAVEQKALAFEVNWQPTPYALVNLDWLR 783

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           + Q+I NLLSNAVKFT   G++ V +   +      S+ D G G+++ ++  +   F QG
Sbjct: 784 VNQIINNLLSNAVKFTDK-GKISVNIHVCA-NELVFSVHDTGCGMSKAQLDALFQPFVQG 841

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             +I     G GLG+ I + ++    G   + SK  +G E+   LP
Sbjct: 842 DKSISRRFGGTGLGMSIVKKLVDIMTGTIEVSSKQGKGTEITVRLP 887


>gi|323704635|ref|ZP_08116213.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536097|gb|EGB25870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 610

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           E + AK  F++ +SHE +TPL +I+  + +I  E +G + N+  +  +  I    + L  
Sbjct: 377 ELDQAKDDFISIISHEFKTPLTSIMMGTSMILEEKIGVI-NDKQRSTLVAIEEESEKLTE 435

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+NE+++L++IE+G+   +    S+  I +  +  L   A EK + +   ID  +  V+A
Sbjct: 436 LVNELIELTKIESGKEMYNFKCCSIFGIAQNTVKPLYNIANEKGVNLTNTIDEDMPGVYA 495

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D + +  V+ NL++NA+K+T  G  + ++     G    IS+KD G GI +     +   
Sbjct: 496 DPEKITWVLNNLITNALKYTDAGDDITISAS-VDGDFMQISVKDTGAGIPKEYKDKIFDK 554

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           F       +   +G GLGL + + I+  HGG+    S +  G   +  LP
Sbjct: 555 FFHVQNDDEFEIKGTGLGLAVVKEIVEAHGGKVWCESDIDIGSNFMFTLP 604


>gi|295107993|emb|CBL21946.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 468

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 125/305 (40%), Gaps = 10/305 (3%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             +   +  I+        L +  YI   L +                  L+    +   
Sbjct: 168 LWIIQLLYIITYLVAAVLFLWYSRYIRRPLREITKGASEFANGNLSYQIPLDSENEMGYL 227

Query: 238 TRK---RAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
            +     A++ N +   + +F++++SH+ R+PL +I G+ E +     G +  E  ++Y+
Sbjct: 228 AKNLNYMADKLNRSGEYQRQFISNISHDFRSPLTSIKGYIEAMID---GTIPVEMQEKYL 284

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I    + L  L   +L L+ ++  +  L+     +  +++      +     +NI + 
Sbjct: 285 KIISYETERLEKLTRGLLTLNELDIQKRMLNIQPFDINGVIKATAASFEGSCTSRNILLE 344

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +        AD + ++QV+ NLLSNA+KF+     + +          ++S+KD+G G
Sbjct: 345 LILSGRELLAQADMEQIQQVLYNLLSNAIKFSPDNSTITIETT-EKNGKIFVSVKDHGIG 403

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +  I  +   F +   +    ++G GLGL I + I+  HG    + S    G E I  
Sbjct: 404 IPKASIHKIWERFYKIDRSRGKDQKGTGLGLAIVKEIIKAHGQHINVISTEGIGTEFIFT 463

Query: 472 LPNTR 476
           L   +
Sbjct: 464 LEKAK 468


>gi|228939122|ref|ZP_04101717.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971999|ref|ZP_04132617.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978609|ref|ZP_04138982.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407]
 gi|228781105|gb|EEM29310.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407]
 gi|228787713|gb|EEM35674.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820545|gb|EEM66575.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 351

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 153/349 (43%), Gaps = 16/349 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 7   LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 66

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 67  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 122

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 123 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 179

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 180 LSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 237

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 238 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 296

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +
Sbjct: 297 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 345


>gi|224537361|ref|ZP_03677900.1| hypothetical protein BACCELL_02239 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520986|gb|EEF90091.1| hypothetical protein BACCELL_02239 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 793

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 139/328 (42%), Gaps = 8/328 (2%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L+ +              +    P++ +L      S  +    +    +     +  +  
Sbjct: 467 LVGMEQRTFVRTDFLKYAYPDDVPLLNSLYETLHQSTDMQVRRVRFSFSEEDYRWYELRC 526

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              K     +       D+  ++E  +    + ++ AE   L K  FL +MSHE+RTPLN
Sbjct: 527 RSLKDAKGRIMLAGIMQDIQIQVEH-EEQLIQAKQMAENAEL-KQSFLNNMSHEIRTPLN 584

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GF+ ++  E    +  +  K  +  I+R+ + LL L+N+++++SR+++G  +L    
Sbjct: 585 AIVGFTNLLVGEGGDEIEPDEKKAMLEIINRNNELLLKLVNDVVEISRLDSGNMDLEIKE 644

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
             +  +V+E  +  Q   +          +     V  D     QVI N L NA KFT  
Sbjct: 645 WDMATVVKEIYMAYQALIKPSLQFHLALDENLSLPVNIDRMRFIQVISNFLGNADKFT-R 703

Query: 386 GGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G + +         +  + ++D G GI E E+  +   F +        EQG GLGL I
Sbjct: 704 SGSITLGCKVDKKDRKVSVYVQDTGKGIDEKELMMIFDRFYKTDE----FEQGSGLGLSI 759

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + I+    G+  +RS++ +G     +L
Sbjct: 760 CKVIIEKLCGRIEVRSEVGKGSRFTVVL 787


>gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
 gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
          Length = 817

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 4/254 (1%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           +     T    +E +  K+ F+  +S+ELR+PL  I+GF++++     G L+    +EY 
Sbjct: 568 ERALHATNDALQEADQLKNAFIQHVSYELRSPLTTIIGFAQLLGDAKFGDLS-PKQEEYT 626

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I  S   LL++IN+ILDL+ ++AG  EL  S + +   V E +  L+ R  E +I + 
Sbjct: 627 DYILSSSSALLHIINDILDLATVDAGIMELEISEVDVAQTVSEAVEGLKDRLVESDITLR 686

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
             +   +  + ADE+ +RQV+ NLLSNA++++  GG V ++            IKD+G G
Sbjct: 687 THMPDDIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDISCQR-EENEIRFRIKDHGAG 745

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I +  +  V + F           QGVGLGL I +S +  HGG   I S+  +G  V   
Sbjct: 746 IPQEMLEQVFSRF--VGRGAGGNRQGVGLGLSIVKSFVELHGGTVDITSEEGQGTTVDCT 803

Query: 472 LPNTRVLNFIPEDN 485
            P    ++ +    
Sbjct: 804 FPLEPHIHSLEAAE 817


>gi|21230299|ref|NP_636216.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769707|ref|YP_244469.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992922|ref|YP_001904932.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111848|gb|AAM40140.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575039|gb|AAY50449.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734682|emb|CAP52892.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris]
          Length = 636

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/339 (29%), Positives = 165/339 (48%), Gaps = 12/339 (3%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L +       L     +      +     A+ ++     +L+G L T  +    +   L 
Sbjct: 171 LQVRTAKAQGLRQRNLIITLSAAMLGGLGAVFAVAWFASALSGRLRTLAANADRLGEGLP 230

Query: 209 KSNV----KILSCQAEKDDLIAELEVAKS-LSDETRKRAEEENLAKSRFLASMSHELRTP 263
            +        L    ++    +EL  A++  +   R+ AE  N AK+ FL+  SHELRTP
Sbjct: 231 LAAQPRAGDELGQVGQRLAQASELLAARANEAQLARREAETANRAKTEFLSRSSHELRTP 290

Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
           LNAILG+++V+E++    L    ++ ++  I  +G+HLL LI E+LD++RIEA + +LS 
Sbjct: 291 LNAILGYAQVLEMD----LPEPGHRRHLQHILGAGRHLLGLITELLDIARIEADQLDLSP 346

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
             I++   V E + ++   A +  I +         +V AD + +RQV+LNLLSNAVKF 
Sbjct: 347 EPIAVRAAVHEALGLIAPDADKHGISLQPPAIDGPWTVRADAQRLRQVLLNLLSNAVKFN 406

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
             GG+V V+      +   I + D G G+   +I  + T F +   A +SA +G GLGL 
Sbjct: 407 RTGGQVQVSAQPDGDQ-VRIVVADQGAGLTAAQIERLFTPFERL-GAERSAVEGTGLGLA 464

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +++ ++   GGQ  + S    G      LP     +  P
Sbjct: 465 LSKRLIEAMGGQIGVDSSRD-GARFWISLPQGEPQSAEP 502


>gi|312144079|ref|YP_003995525.1| integral membrane sensor signal transduction histidine kinase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904730|gb|ADQ15171.1| integral membrane sensor signal transduction histidine kinase
           [Halanaerobium sp. 'sapolanicus']
          Length = 459

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 140/310 (45%), Gaps = 9/310 (2%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
              ++VA +  A++S+ +   +   ML+             F    + LS +   D+L  
Sbjct: 159 ILVLIVAAAFGALISVFLGYFTTKKMLSPINKITETAREISFNDIDRRLSVKGPDDELKK 218

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
                 S+ D    R E     + +F++  SHELRTP++ I G+ +++     G    + 
Sbjct: 219 LALTFNSMLD----RLERAFKKQKQFVSDASHELRTPISVIKGYVDLLNR--WGKEKPKV 272

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
             E I  I +  +++  L+  +L L+R +      +E   +L ++++E I   +L   + 
Sbjct: 273 RDEAIKAIKKETENMKQLMENLLLLARGDDSELIKNEELFNLNNLIKEIIKEFKLLKDDI 332

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
            I      + +  + W D+   +Q+I   + N++KFT+    + + +  T      ISI+
Sbjct: 333 EINF---QEKAEINFWGDKNLFKQLIRIFIDNSIKFTSNSENIKLMIDKTETSNCIISIE 389

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GIA  ++P V   F Q   +    ++G GLGL IA+ I+ ++ G+  + S   EG 
Sbjct: 390 DKGQGIAAEDLPHVFDRFYQADKSRTRKKEGSGLGLAIAKEIVDSYNGEIDVESTEGEGT 449

Query: 467 EVIAILPNTR 476
                LP  +
Sbjct: 450 TFRIYLPINK 459


>gi|189464626|ref|ZP_03013411.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
 gi|189436900|gb|EDV05885.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
          Length = 783

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 8/268 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
              K     +       D+  ++E  +    + ++ AE   L K  FL +MSHE+RTPLN
Sbjct: 517 RSLKDAKGRIMLAGVMQDIQLQVER-EEQLIQAKQMAENAEL-KQSFLNNMSHEIRTPLN 574

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           AI+GF+ ++  E    +  E  K  +  I+R+ + LL L+N+++++SR+++G  +L    
Sbjct: 575 AIVGFTNLLVGEGGDEIEPEEKKAMLEIINRNNELLLKLVNDVVEISRLDSGNLDLKIKE 634

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
            ++  +V+E  +  Q   +          +     V  D     QVI N L+NA KFT  
Sbjct: 635 WNMTTVVKEIYMAYQTLIKPSLQFHLVLDESLSLPVRIDRMRFIQVISNFLNNADKFT-R 693

Query: 386 GGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
            G V +         +  + ++D G GI E E+  +   F +        EQG GLGL I
Sbjct: 694 SGSVTLGCSVDKEHRKVSVYVQDTGKGIDEKELMMIFDRFYKTDE----FEQGSGLGLSI 749

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + I+    G   ++S++ +G     IL
Sbjct: 750 CKVIIERLCGHIEVQSEVGKGSRFTVIL 777


>gi|323965349|gb|EGB60807.1| phosphate regulon sensor kinase PhoR [Escherichia coli M863]
 gi|327254716|gb|EGE66332.1| phosphate regulon sensor kinase PhoR [Escherichia coli STEC_7v]
          Length = 431

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        ++      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQQRQTFTFEIDNDL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLHIESTVGKGTRFSFVIP 422


>gi|118443619|ref|YP_877113.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134075|gb|ABK61119.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 470

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            EE +  +  F++++SHELR+P+ +I GF   I     G +  E  K Y+   +   Q L
Sbjct: 240 LEEVDENRRSFISNVSHELRSPITSIKGFIGGILD---GIIPKEKEKYYLSIAYEEIQRL 296

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LIN++LDLS IEAG++ L+     + +I+R  II  +   + K + +   ++      
Sbjct: 297 TRLINDLLDLSTIEAGKFVLNMKKEDINEIIRLSIIKFETIIKSKKLNVEVWLEEESVYA 356

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + QVI NL+ NA+K+    G + +      G+  YIS+ ++GP I+E +   + 
Sbjct: 357 LVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTK-VRGQYIYISVYNDGPNISEEDGKYIW 415

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F +G  +        GLGL I + I+  HGG     +K  +GV+ I  L
Sbjct: 416 DRFYKGDKSRTMKVS-TGLGLSIVRRIVTKHGGDIWFENKEDKGVKFIFTL 465


>gi|2852991|gb|AAC02213.1| ethylene receptor homolog [Solanum lycopersicum]
          Length = 754

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 29/284 (10%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ E        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 322 SHAAILEESMRARDLLME---QNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIA 378

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L     +L 
Sbjct: 379 LSSLLQETDLTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLH 434

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388
            + RE   +++  A  K + +   +   L   V  DEK + Q++LN++ NAVKF+   G 
Sbjct: 435 ALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKE-GN 493

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V ++                             + IKD G GI   +IP + + F Q   
Sbjct: 494 VSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQA 553

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAIL 472
              +   G GLGL I +  +    G   I S+ L +G   I I+
Sbjct: 554 LATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFII 597


>gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 781

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 7/285 (2%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250
                +              ++ +    A++   +      +      R +A   N  K 
Sbjct: 350 FRATVSAGPVRSDARACVALSLTLRESGAQRRRDLRAQRSLRGARV-ARDQAATSNRLKD 408

Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310
             LA++SHELRTPLN I G+ EV+       L     ++ I  I RS + L  ++ +ILD
Sbjct: 409 ELLATVSHELRTPLNVIYGWVEVLRNSGDSAL----QQQAIDAIDRSARSLTRMVGDILD 464

Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370
            S +  G+ +L    + ++ +  + +   Q  A    I +      S   V  D + +RQ
Sbjct: 465 ASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASSAGIVLEFDCAASTCVVSGDAERLRQ 524

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
           ++ NL+SNA+KFT  GG V V +         +++ D G GI    +P V   F +   +
Sbjct: 525 MLSNLVSNALKFTPAGGSVTVGLAR-DDVRVVLTVSDTGQGIVPAFLPYVFDMFRRADDS 583

Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
             S+ +G+GLGL I + I   HGG   ++S     G      LP 
Sbjct: 584 PASSRRGLGLGLSIVRHIAELHGGSVTVKSAGRNRGATFTVTLPV 628


>gi|109897620|ref|YP_660875.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
            T6c]
 gi|109699901|gb|ABG39821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
            T6c]
          Length = 1223

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 14/303 (4%)

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244
            LA  +    +F        ++  +  ++    +D  +       +   E RK AE+    
Sbjct: 785  LAKGIDWEDTFPLRGANGKYRWFLSRMNAIYAQDGQLIRFFGTNTDITEQRKMAEKLTKL 844

Query: 245  ------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                   +  K  FLA+++HELR PL  +    E+I        +    +  +  + R  
Sbjct: 845  TNKLSVADKRKDEFLATLAHELRNPLAPLRNSMELIRN---VKTDPAMMQTAVATMDRQV 901

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
              ++ LI+++LD+SRI   +  L    I L DIV + +  +   A+     +   +    
Sbjct: 902  AQMVRLIDDLLDISRISKDKLSLKRQRIDLKDIVEQAVEAVSPYAKRLGHSVQVNMPHEA 961

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
             S++AD   + Q++ NLL+NA K+T   G + VTV     +   IS+KD+G GIAE    
Sbjct: 962  ISLFADPARLAQILGNLLNNACKYTPKNGFIWVTVNLGGEQQVSISVKDSGLGIAEHMRS 1021

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRV 477
             V   F Q S  ++ AE G+G+GL + + ++  HGG    +S+ L  G E I  LP+T  
Sbjct: 1022 QVFELFTQVSNQLEQAEGGLGIGLSLVKRLVEMHGGHVECKSEGLGHGAEFIVTLPSTPA 1081

Query: 478  LNF 480
               
Sbjct: 1082 RPS 1084


>gi|110639415|ref|YP_679624.1| two-component sensor histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282096|gb|ABG60282.1| two-component sensor histidine kinase, phosphate regulation
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 350

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 144/352 (40%), Gaps = 9/352 (2%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
           T            +  ++   L ++ +  A+    + +     + +I +  +L+ +L   
Sbjct: 2   THPRNVAIFLGVFVTGITALLLYSYSVIPALAGWQWMLFFLFISISISTYVLLNTTLYKE 61

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---K 249
           L               + N +        D ++   +     + + ++  EE       +
Sbjct: 62  LDNISDMLRPFKKK--EGNPERNKYINTTDPIVKIRKELSDFAVQKQREIEELKKLETFR 119

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             FLA +SHEL+TPL A  GF   +    M  LN    + ++     S   L  L+ +++
Sbjct: 120 REFLADVSHELKTPLFAAQGFVHTLMEGAMDDLNV--RERFLNKAAYSLDGLNVLVEDLI 177

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGM 368
            +S++E G  ++      +  +  +    L+  A++K   +      P    + AD+  +
Sbjct: 178 TISQLEIGEIKMHFQNFDIRKLTEDIFEQLEDTAEKKGTRLKFNKYSPKSCYIHADKLRI 237

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ NL+ NA+K+    G V  +    +     IS+KD+GPGI E  +  +   F +  
Sbjct: 238 GQVVTNLIVNAIKYGKDNGTVVFSYTIENE-SVLISVKDDGPGIEEPHLNRIFERFYRVE 296

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +    + G GLGL I + I+  H  +  + SK+ EG E    L   +V+N 
Sbjct: 297 KSRSKDKGGSGLGLSIVKHILEAHDSRIHVTSKVNEGTEFQFRLKKGKVINE 348


>gi|241766418|ref|ZP_04764294.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241363397|gb|EER58898.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 600

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 163/442 (36%), Gaps = 16/442 (3%)

Query: 35  REIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWSLITLAVYAANLSLG 90
            E++   V  L +  P+  L  L  +    W             W +  + V        
Sbjct: 2   DEVLREQVALLRQNFPMTLLASLATSLGTLWVMARVADGQAMAAWLVSHVLVVTGVYLSL 61

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
           + +     +          L+    A+GL W  L LV       + +         ++  
Sbjct: 62  RSIH---PQTAPAQSAARKLIACMAAMGLSWGGLGLVVMHWGNSDSVIYAIGIVSTVSSG 118

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
              L    L  A        +  +     ++   +      +                 +
Sbjct: 119 ALGLGA-PLYRAYLTYLSCAIGGVLIAIALAGGPVLWPALFLTLVYYGLTCMQARTADAA 177

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
             + ++ + E   L+A L      +   +K AE+ +  KSRFLA+ SH+LR PL+A+  F
Sbjct: 178 TRRSIALKLENQRLVARLRAESQRALAAQKIAEKADHDKSRFLAAASHDLRQPLHAMGLF 237

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E ++   +    N+  +  +G  H +      ++  +LD SR+EAG  +   +A ++  
Sbjct: 238 LETLQRSPL----NDRQRTVLGHAHAASSAAAEMLTTLLDYSRLEAGVVKARPAAFAVQP 293

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           ++        ++A      +  +   + ++  AD   +  V+ N +SNA+++TA GG   
Sbjct: 294 LLTALEQEFGVQADNAG--LVYRTRETSAASHADRSLVGLVMHNFISNALRYTARGG--V 349

Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
           +      GR   + + D G GI   +   +   F Q     +   +G+GLGL I Q ++ 
Sbjct: 350 LIACRRRGRRLALEVWDTGIGIPSHQWDDIFQEFHQLGNPERDRRKGLGLGLAIVQRLVQ 409

Query: 451 NHGGQFLIRSKLREGVEVIAIL 472
             G    +RS+   G      L
Sbjct: 410 AMGTTVELRSRPGRGSVFRLWL 431


>gi|126651966|ref|ZP_01724158.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126591235|gb|EAZ85344.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 621

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 4/231 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+  + +  F++++SHELRTPL  +  + E +        N      ++       + ++
Sbjct: 382 EKIEMDRREFVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPT--FLNVTQTETERMI 439

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+N++L LSR+++  YEL++  +         I   +  ++   ++  +    +   V 
Sbjct: 440 RLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFE-MSKSDKVQFARLFPETSFYVE 498

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QVI N++SNA+K++  GG +        G    + I D+G GI +  +  +  
Sbjct: 499 IDTDKVTQVIDNIISNAIKYSPDGGNIRFGFT-GQGDMLKVMISDDGMGIPKENVGRIFD 557

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   A   +  G GLGL IA+ ++  HGG+    S+  +G  +   LP
Sbjct: 558 RFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608


>gi|119351157|gb|ABL63473.1| ethylene receptor [Coffea pseudozanguebariae]
          Length = 740

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 126/286 (44%), Gaps = 31/286 (10%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ E        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 307 SHAAILEESTRAGDLLME---QNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIA 363

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L      L 
Sbjct: 364 LSSLLQETELTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLH 419

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR 388
            + +E + +++  A  K + +   +   L      DEK + Q++LN++ NAVKF+  GG 
Sbjct: 420 GLFKEVLNLIKPIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGG- 478

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           + ++                             + +KD G GI   +IP + T F Q   
Sbjct: 479 ISISASVAKSDSLRDPRAPDFSPMHSDNHFYLRVQVKDTGSGIMPQDIPKLFTKFAQSQS 538

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE--VIAIL 472
                  G GLGL I +  +    G   + S+ L +G     +  L
Sbjct: 539 LAAKNSGGSGLGLAICKRFVNLMDGHIWLESEGLGKGCTAIFMVKL 584


>gi|166009411|ref|ZP_02230309.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210747|ref|ZP_02236782.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401078|ref|ZP_02306581.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|165991966|gb|EDR44267.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207927|gb|EDR52407.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167049467|gb|EDR60875.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|262361878|gb|ACY58599.1| Histidine protein kinase sensor [Yersinia pestis D106004]
 gi|262365983|gb|ACY62540.1| Histidine protein kinase sensor [Yersinia pestis D182038]
          Length = 1242

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         N 
Sbjct: 669 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSNR 723

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  +A+     +     + Q  A 
Sbjct: 724 PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPIAN 783

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT   G V V + W     Q+ 
Sbjct: 784 ERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPSDEQHG 842

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 843 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIALE 902

Query: 460 SKLREGVEVIAILPN 474
           S+L +G  ++  LP 
Sbjct: 903 SQLGKGTSLLITLPL 917


>gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis]
 gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 1202

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 145/336 (43%), Gaps = 20/336 (5%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVA--------LSTQAIMSMHVLDISLAGMLATALSFFT 201
           S + +S   +   +  +  PV +A        +    + S     + +  +L   +    
Sbjct: 451 SAAPISGNPVLQELIRTRAPVAIADIEQRPDSMVMLPLRSPSKALLVVPLLLDGDIIGSI 510

Query: 202 YI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256
            +       H   S + ++   A +  L  +       + +  +R  E +  K+ F  ++
Sbjct: 511 SLRQNHQVRHWQPSEIDMVLLVAAQAALAVQQARLYQKTRQQAERLLEADRLKTEFFQNV 570

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SHE RTPL  ++G  E +  +      ++          R+ + LL L+N++LDL R +A
Sbjct: 571 SHEFRTPLTLMIGPLETVVNQQQDLSLDQ-----AKIALRNSRRLLRLVNQLLDLQRFDA 625

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376
           GR + S     L++  ++ +   +     K I +   +  S   ++ D +   +V+ NLL
Sbjct: 626 GRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQ-SCPQLYLDLERFDKVLYNLL 684

Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436
           SNA+KFT   G + V++    G    + +KD G GI + ++P +   F Q   +   + +
Sbjct: 685 SNAMKFTPTDGTITVSLQP-EGNYCRLMVKDTGIGIKQEQLPHLFERFRQAEGSANRSFE 743

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           G GLGL + + ++  H G+  + S+  +G      L
Sbjct: 744 GSGLGLALVKELVELHHGRITVESEYGQGTTFTVWL 779


>gi|187775852|ref|ZP_02798687.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024557|ref|ZP_02997155.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010261|ref|ZP_02806017.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401974|ref|ZP_02779320.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403035|ref|ZP_02792497.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404265|ref|ZP_02788237.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405993|ref|ZP_02825630.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC508]
 gi|208808659|ref|ZP_03250996.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816058|ref|ZP_03257237.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822610|ref|ZP_03262929.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396858|ref|YP_002269719.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326169|ref|ZP_03442253.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. TW14588]
 gi|12514260|gb|AAG55540.1|AE005293_4 sensor protein torS (regulator TorR) [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360608|dbj|BAB34571.1| sensor protein torS [Escherichia coli O157:H7 str. Sakai]
 gi|187770408|gb|EDU34252.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018115|gb|EDU56237.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001171|gb|EDU70157.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358204|gb|EDU76623.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363312|gb|EDU81731.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366555|gb|EDU84971.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377093|gb|EDU95509.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC508]
 gi|208728460|gb|EDZ78061.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732706|gb|EDZ81394.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738095|gb|EDZ85778.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158258|gb|ACI35691.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209774100|gb|ACI85362.1| sensor protein torS [Escherichia coli]
 gi|209774102|gb|ACI85363.1| sensor protein torS [Escherichia coli]
 gi|209774106|gb|ACI85365.1| sensor protein torS [Escherichia coli]
 gi|217322390|gb|EEC30814.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. TW14588]
 gi|320192509|gb|EFW67151.1| Sensor protein torS [Escherichia coli O157:H7 str. EC1212]
 gi|320637860|gb|EFX07652.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           G5101]
 gi|320653760|gb|EFX21834.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|326338564|gb|EGD62391.1| Sensor protein torS [Escherichia coli O157:H7 str. 1125]
 gi|326347794|gb|EGD71510.1| Sensor protein torS [Escherichia coli O157:H7 str. 1044]
          Length = 904

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 679

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 169/418 (40%), Gaps = 28/418 (6%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV--YVWRIWLLVGQIAIGLCW 121
            W     +     ++ + V+A N  L ++V     ++             V  I   +  
Sbjct: 280 MWLILAALVIGALVVMVWVFAWNRLLKRQVQQRTAQLQRALFEAEISRDNVDAILKSVAD 339

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
            L+            + +          +   L    L  +   +   V+ +  +   +S
Sbjct: 340 GLIVA-----NRDNRVILMNR-------AAEQLLGTSLDQSYLQAIDTVLASPESSRYLS 387

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
                    G +   +           ++   ++  Q               + D TR+R
Sbjct: 388 RVFEQGDDCGAVEWVVEGVGEQQGRTIQARTAVVQAQHGNR-----SRTITIVRDVTRER 442

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL-ETMGPLNNETYKEYIGDIHRSGQH 300
             E +  K+ F+++ +HELRTPL A++G++E++   E    +  +     +  I+     
Sbjct: 443 --ELDRMKNEFISTAAHELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLTTIYEKACR 500

Query: 301 LLNLINEILDLSRIEAG-RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           L  ++ ++LDLSR+ +G    LS ++  +  ++   +   Q R   ++  +  ++D    
Sbjct: 501 LEGIVADLLDLSRVHSGCLIALSRASCDINSLLCRAVGGYQYR---QDFTVALELDSEEV 557

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +WADEK + QV+ NLLSNAVKF++   +V V  G        I ++D+G G+   ++  
Sbjct: 558 VLWADEKKLEQVMDNLLSNAVKFSSESCQVFVR-GHRDDDVYVIEVEDHGIGMTPKQVER 616

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           V   F +   +   A  G+GLG+ I ++I+  H G   ++S   +G  +   LP   +
Sbjct: 617 VFDKFYRVDSSDT-APGGLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLPIEPI 673


>gi|160893063|ref|ZP_02073851.1| hypothetical protein CLOL250_00608 [Clostridium sp. L2-50]
 gi|156865146|gb|EDO58577.1| hypothetical protein CLOL250_00608 [Clostridium sp. L2-50]
          Length = 484

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 118/237 (49%), Gaps = 4/237 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +A+    ++  F++++SHEL+TP+ ++   SE I ++   P+  ETY+E++ DI      
Sbjct: 251 KAQLLEESRQEFVSNVSHELKTPITSMKVLSESILMQENVPV--ETYREFMNDIVLEIDR 308

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
              +I+++L L + + G   L+   + + +++   +  L   A+++NIEI  +    +S+
Sbjct: 309 EAQIISDLLTLVKTDKGSDSLNIERVDINELMEVILKRLTPLAEKRNIEITFESFREVSA 368

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D+      I NL+ N +K+   GG + V++        YI + D+G GI E  +  +
Sbjct: 369 -DIDKVKFTLAISNLIENGIKYNVDGGWIRVSLNADHKN-LYIKVADSGVGIPEDCVEHI 426

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              F +   A      G GLGL I+++I+  H G   + S+  +G      +P   V
Sbjct: 427 FERFYRVDKARSRDTGGTGLGLAISKNIIVMHKGIINVYSEPGKGTTFTVRVPMNYV 483


>gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 832

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K  FLA+MSHELRTPL ++LGF+ +++ E   P  +   + +I  +   G+ LL  IN+I
Sbjct: 460 KGEFLANMSHELRTPLTSVLGFARLVDNE---PDLSPDARRFISRVLSGGKALLTTINDI 516

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367
           LD S++EAG+ EL     +   ++ E + +  L  + + + +       L + +  D   
Sbjct: 517 LDFSKLEAGQLELKLEPTAPAQLIDEAMDLFSLETEARGVALRAVGLEDLPADLLIDGGR 576

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQ 426
           +RQV+LNL+ NAVKFT + G + V+  +     +  +S+ D GPGIA G++  +   F Q
Sbjct: 577 LRQVLLNLIGNAVKFTEV-GTITVSAAYEPAGERLSLSVADTGPGIAPGDVDLLFRRFSQ 635

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
               +     G GLGL I + ++   GGQ  + S   +G     
Sbjct: 636 VDAGLTRKHGGTGLGLAICKGLVEAMGGQIGVTSVPGQGACFSF 679


>gi|323484834|ref|ZP_08090190.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum
           WAL-14163]
 gi|323401830|gb|EGA94172.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum
           WAL-14163]
          Length = 466

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 139/344 (40%), Gaps = 7/344 (2%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G +T E   + +   +   L +     + L          +  +L      ++ ++ +  
Sbjct: 126 GGYTEEQYPLIQDGKVTGTLKLGYYGPYSLSDGELELMKSLDKSLLIIGAAALCIVAVLG 185

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +        T +     +        QAEK+  IAE  +     +E   + EE    K
Sbjct: 186 MLIARAVTDPVTGVIRTAQRIAGGEYGTQAEKNSSIAETALLIEAINEMSLKLEENEKQK 245

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            R  + ++HELRTPL  +    E +                +   H     L+ ++ ++ 
Sbjct: 246 RRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTA-----RLESCHAEILRLVGIVEQLQ 300

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           +L  +E       +      ++  E     +++A+EKNI +   + P    V+AD   ++
Sbjct: 301 ELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTP-VYADYYRLK 359

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q ++NL+SNA+ +T  GG + V           I ++D+GPGI E +I  +   F +   
Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMRE-GHVEIKVRDDGPGIPEEDISHLFERFYRVDK 418

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +      G+G+GL I ++I+  HGG+    ++  +G      LP
Sbjct: 419 SRSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462


>gi|281178110|dbj|BAI54440.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 900

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ N AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKANQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +  +I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GHIILR-SRTDGERWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +     G+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMSGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
 gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
          Length = 447

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 152/296 (51%), Gaps = 17/296 (5%)

Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
           ++    +      ++   +    ++          ++  +     L  +  +  +   + 
Sbjct: 161 LIRPFRITWIGFTLVVLFICSSLFL--------WSVMKIRESSKVLNEQFSI-NTKLKKA 211

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL-ETMGPLNNETYKEYIGDIHRS 297
           ++  EE +  KS+FLA++SHEL+TPLNAI+GFS++I   E +G      ++EY  DI+ S
Sbjct: 212 KESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLIRTAEVLGT----EHREYANDIYYS 267

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
           G HLLNLIN+ILD S+ E    E+  +   L+ +   CI M     + K I+I +    +
Sbjct: 268 GNHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRM--TTTKRKKIKIVKSFFSN 325

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              + +D K ++QVILN+LSN++KFT   G + +++         I I DNG GI E +I
Sbjct: 326 KILIKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPS-EIEIEISDNGVGIPEKDI 384

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
              L+ FGQ +  +     G G+GLP+++ ++   GG F I SK   G  V   LP
Sbjct: 385 AKALSVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLP 440


>gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
 gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
          Length = 744

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+ +  KS  +A++SHELRTPLN I+G S ++    +    +   +EY+  I+ S   L 
Sbjct: 235 EKNSRDKSTLMATISHELRTPLNGIIGLSRILLEGEL----SAQQREYLKTINISAVSLG 290

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361
           ++ ++I+DL +I++ R EL  S +    ++        L A++K I+   + D +L   V
Sbjct: 291 HIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFV 350

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
             D   + Q++ NL++NAVKFT  GG + + V           +KD+G GI + E   + 
Sbjct: 351 CVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIF 410

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q   +     QG G+GL I++ I    GG   + S+L +G     I+
Sbjct: 411 AMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLII 461


>gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
            RKR E     ++ F++++SHELRTPL AI G   +I    +G +  E  ++ +     +
Sbjct: 405 ERKRGE---QLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAV-PENMQQMLEIAQSN 460

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
            Q L +LI+++LD+ ++ AG+       ++L  ++++ +   Q  A+ + + +       
Sbjct: 461 SQRLRHLIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYAERQQVRLQLLAGSD 520

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V AD K + QV+ NLL+NA KF++ G  V ++          IS++D G GI     
Sbjct: 521 -CQVLADAKRVEQVLANLLANAAKFSSPGQPVELSAAPR-DGWVRISVRDQGLGIPTSFK 578

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           P + + F Q        + G GLGL I++ ++   GG+    S+  +G      LP  
Sbjct: 579 PRIFSKFAQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEGQGSTFWFELPLA 636


>gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1381

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 11/311 (3%)

Query: 180  MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239
             S +V ++++  +     +++ Y+ Y +  S + +   +  K+ ++  L  A  L +  +
Sbjct: 797  WSGYVRELTVVVLPPFWATWWAYLLYVIIVSVIGVSIYRTAKNRIL--LRNALRLREIEK 854

Query: 240  KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
             +AEE N AK +F  +++HEL TPL  I    + ++ +        ++ +    ++ + Q
Sbjct: 855  AKAEELNHAKLQFFTNITHELLTPLTIISATVDELKTQA------PSHNDLYTVMNSNIQ 908

Query: 300  HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
             L+ L+ +IL+  + E G  +L  S   +   V+      Q   +++ I      DP   
Sbjct: 909  RLIRLLQQILEFRKAETGNLKLRVSPGDIAAFVKNAAESFQPLVKKRKIHFSFLCDPESM 968

Query: 360  SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYISIKDNGPGIAEGEI 417
              + D   + +++ NLLSNA K+    G + V++ +  T      + IKDNG GI++ + 
Sbjct: 969  IGYFDMDKLDKILYNLLSNAAKYNKEDGFIQVSLSYDETDKDFILLKIKDNGKGISKEKQ 1028

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
              +   F +G    K    G G+GL + + ++  HGG   + S++  G E +  +P  R 
Sbjct: 1029 KNLFKRFYEGDY-RKFNTIGTGIGLSLTKDLVELHGGTISVESEVDHGTEFMVRIPIERS 1087

Query: 478  LNFIPEDNHES 488
                 + + E+
Sbjct: 1088 YYDEEQIDDEA 1098


>gi|303240209|ref|ZP_07326729.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302592300|gb|EFL62028.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 811

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 118/252 (46%), Gaps = 2/252 (0%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           D+  + E         ++  E     K  FL ++SHE +TPL  I    + I        
Sbjct: 530 DMRDKQEALIVAERREKEALENAIKIKDEFLTTISHEFKTPLTVINAAIQTIYS-LYESE 588

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
            +E  K+++  IH +    L L+N ++D+S+   G  +L    + +I +  E I  +Q  
Sbjct: 589 LSENVKKHLKRIHTNYYRQLKLVNNLIDMSKYREGHIQLVRQDVDIISMTGEIIKFIQPI 648

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           + +K + +    D     +  DE+   +++LNLLSNA+K+T  G  ++V + +  G+   
Sbjct: 649 SMQKGVYLQFDSDLESKVLAIDEEKYERILLNLLSNAIKYTPSGKSIYVNITF-KGQYFV 707

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
           ++++D G GI   +   +   F +   ++    +G G+GL + + I++  GG   + S++
Sbjct: 708 LTVRDEGLGIPIEKHECIFEHFVKVDTSLTRLTEGTGIGLSLVKWIVSALGGSISLESEV 767

Query: 463 REGVEVIAILPN 474
             G      LP 
Sbjct: 768 GVGSTFAVTLPV 779


>gi|258512229|ref|YP_003185663.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478955|gb|ACV59274.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 429

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A  SHELRTPL  I     ++   T      E   E++ + H   + L  
Sbjct: 181 RAFQRQLEFVADASHELRTPLAVIQSNLGIVMEHT--DQTVEENLEWLNNAHGEARRLAK 238

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L L+R ++ R  +    ++L D++     + +  A+ + IE+  + +  L  V  
Sbjct: 239 LVQDLLTLARSDSERMPVERRPVALNDLLERIHDLYETIAEMRGIELTVRAEEPLV-VLG 297

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+++ L+ NA+KFT  GG+V +       +   +S++D G GIA+  +  V   
Sbjct: 298 DRDRLHQLLVILIDNAMKFTDAGGKVEIAATRNRNQ-AILSVRDTGIGIAKEHLERVFDR 356

Query: 424 FGQGSIAIKSAEQ--GVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNF 480
           F     A     +  G GLGL IA+ I+  HGG+  I S+ + +G  V   LP +     
Sbjct: 357 FYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIASEGIGKGTTVRVELPLSPKRAA 416

Query: 481 IPED 484
             ++
Sbjct: 417 GSDE 420


>gi|188589648|ref|YP_001921661.1| sensor histidine kinase/response regulator [Clostridium botulinum E3
            str. Alaska E43]
 gi|188499929|gb|ACD53065.1| sensor histidine kinase/response regulator [Clostridium botulinum E3
            str. Alaska E43]
          Length = 1065

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 138/299 (46%), Gaps = 10/299 (3%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSD 236
              ++       +G +   L     I Y L  + +K L    EK    L  E+E  + L D
Sbjct: 769  AFTIKPPLWKSSGAIFVYLIMIVLIIY-LSITKMKNLDRMVEKRTKQLRDEMEKNRKLFD 827

Query: 237  ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDI 294
                +  +    K+ +  ++SHELRTPLN I    ++I    +    +  E    Y+  I
Sbjct: 828  ----KVIDLERRKNNYFVNLSHELRTPLNVISSTEQLISELNKQDNGIEKEKLSYYMKII 883

Query: 295  HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             R+   LL LIN I+D ++IE+GRY+++     ++ +V E  + L+   + K I +    
Sbjct: 884  KRNSNRLLKLINNIIDTNKIESGRYQINLKENDIVYLVEETSLSLKDYIENKGIHLIIDP 943

Query: 355  DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
            +     +  D   + + I+NL+SNA KFT  GG + VT+         I++KD G GI  
Sbjct: 944  EMEEKIIMCDSYEIERCIVNLVSNAAKFTPEGGEIKVTLK-DLNNKVIITVKDTGIGIDP 1002

Query: 415  GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
                 V   F Q   A   ++ G GLGL I + I+  H G+  + S L  G E + ILP
Sbjct: 1003 KYHKAVFDRFNQVIDANSESKGGSGLGLTITKHIIDLHKGKIYVNSDLGRGCEFVIILP 1061


>gi|147825347|emb|CAN73257.1| hypothetical protein VITISV_002135 [Vitis vinifera]
          Length = 741

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 46/344 (13%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             +V+ L + +    HV ++ L  ++A  ++           S+  IL       DL+ E
Sbjct: 274 ALMVLMLPSDSARQWHVHELELVEVVADQVAVAL--------SHAAILEESMRARDLLME 325

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                   D  R+ AE    A++ FLA M+HE+RTP++AI+  S +++   + P      
Sbjct: 326 ---QNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTP----EQ 378

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +  I +S   L  LIN++LDLSR+E G  +L     +L  + RE + +++  A  K 
Sbjct: 379 RLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIKPIASVKK 438

Query: 348 IEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399
           + +   + P L    + DEK + Q++LN++ NAVKF+   G + +               
Sbjct: 439 LFVSSSLAPDLPEFAFGDEKRLMQIMLNVVGNAVKFSKE-GNISIFAFIAKSESLRDSRT 497

Query: 400 ------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          + +KD+G GI   +I  + T F Q          G GLGL I + 
Sbjct: 498 PDFFPVHSDNHFYLRVQVKDSGAGIDPQDISKLFTKFAQCQSLAARNSGGSGLGLAICKR 557

Query: 448 IMANHGGQFLIRSK-LREGVE--VIAILPNTRVLNFIPEDNHES 488
            +   GG   I S+ L +G     I  L        IPE ++ES
Sbjct: 558 FVNLMGGHIWIESEGLGKGSTAVFIVKL-------GIPEYSNES 594


>gi|94265878|ref|ZP_01289607.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453573|gb|EAT03972.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 436

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 12/283 (4%)

Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           LS   + +DL   L  A  ++     RAE  + AKSRF+A  SHE+R PLN++LG  +++
Sbjct: 10  LSPGRQTEDLHQALAQALDVAALALDRAERADTAKSRFMAGFSHEVRNPLNSLLGLIDLL 69

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
               + P      ++++  I  +GQHLL ++N+ L  + +E    EL+E    L  ++R 
Sbjct: 70  RQTELTP----RQQQFMEMIDHTGQHLLGVLNQALSFTSLEQASLELNEMEFDLPALLRG 125

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                QL+ Q++ I    ++DP L ++W  D   +RQV++NLL NA KFT   GR+ +  
Sbjct: 126 IFSPYQLQWQQRGISGQLQLDPELPALWHGDPHRLRQVLVNLLDNAGKFTQQ-GRITLAA 184

Query: 394 GWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450
                 G+      ++D G GI   +   + T F Q   +I S   G GLGL I + ++ 
Sbjct: 185 NMEQRNGRPFVHCRVEDTGVGIPAAKAEKIFTPFAQADGSISSRFGGTGLGLTICRQLIE 244

Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNHESTQ 490
             GG+  +    R G     +LP           P D    T+
Sbjct: 245 LMGGEIWVTGGDRSGSSFHFVLPRHPDPEPKQVPPPDAPGQTK 287


>gi|34498055|ref|NP_902270.1| two-component sensor/regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34103910|gb|AAQ60270.1| probable two-component sensor/regulator [Chromobacterium violaceum
           ATCC 12472]
          Length = 924

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 169/371 (45%), Gaps = 17/371 (4%)

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           V +   G  W+++          + L +         + +  L              P+ 
Sbjct: 266 VCKPFKGPPWSMVARYPQRAVASKSLDLLLGTLPSTVIMLFMLLVITFLVLKLQVGSPLQ 325

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
             ++      +  LD  L       L         L      + + ++    L A +   
Sbjct: 326 RIIAVIDRFKLLNLDYRLPDNRQDELGRIAKAYNKL------LATIRSHYRTLEARVHKR 379

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
               DE RK AE  +  KS  +AS+SHE+RTPLN ++G   +++  T+        +E I
Sbjct: 380 TQELDEARKIAELMSRRKSEHIASISHEIRTPLNGVVGALSLLQRSTLTL----QQRELI 435

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                S  +LL +IN++LD S IEAG+ ELS  ++S++ ++ + ++ + LRAQEK++ + 
Sbjct: 436 DTARFSTDYLLIIINDLLDFSHIEAGQLELSYESVSVLQVLDQVMLTIHLRAQEKDLALR 495

Query: 352 QKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
             +   + +  A D   ++Q+++NLL NAVKFT   G + V V    G    ISI+D GP
Sbjct: 496 VLVTDEVPAEMAMDRMRVQQILINLLGNAVKFT-ESGHISVLVAR-KGDMLAISIEDTGP 553

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GIAE +   +   F Q  +       G GLGL IA  +    GG+ L++S+L +G     
Sbjct: 554 GIAEDKQLDIFRPFVQVHM----HNGGNGLGLTIASRLSNLMGGEILLQSELGKGSCFTL 609

Query: 471 ILPNTRVLNFI 481
           +LP +  L  +
Sbjct: 610 MLPLSDSLAVL 620


>gi|169347138|ref|ZP_02866080.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
 gi|169296821|gb|EDS78950.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
          Length = 467

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 9/235 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+EN+ K R    +SHEL+TPL  I    E +      P      +E +  +    + L 
Sbjct: 242 EQENIRK-RLTGDISHELKTPLTNIQSHLEAMIDGIWEPT-----EERLLSVKEEAERLS 295

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L++++  L++ +    +L +  +++ DI+   I      A+ KNI+I  + +    +++
Sbjct: 296 SLVSDMQKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKI--EYEKKNINLY 353

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + Q ++N+LSNA++++  G  + +      G    ISI+D G GI+E ++  V  
Sbjct: 354 CDKDKITQALVNILSNAIRYSNEGSTIFIE-ERLKGNKVIISIEDQGIGISEEDLKYVFE 412

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            F +   +   A  G G+GL I +SI+++HGG+  + SKL EG +   ILP   +
Sbjct: 413 RFYRVDKSRTRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPKEDI 467


>gi|160935996|ref|ZP_02083369.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
 gi|158440806|gb|EDP18530.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
          Length = 1620

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 131/273 (47%), Gaps = 17/273 (6%)

Query: 232  KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
            + L  +   + E     + AKS FL+ MSHE+RTPLN I+G  +      +   + E   
Sbjct: 1229 RELLRQAETKLEIATKSSKAKSYFLSKMSHEIRTPLNGIVGMID---SAMLYRHDKEKLL 1285

Query: 289  EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            + +  + RS  HL  L++E+LDLS+IE+G+ +++   ++L  ++ + I      A+E+ I
Sbjct: 1286 DSLNKLKRSSLHLQQLVSEVLDLSKIESGKMDVNMGPVNLQLLLSDVIEEFGTMAKERGI 1345

Query: 349  EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYIS 404
             + Q        V  D+  + +++ NL+ NA+KFT   G V + +  T            
Sbjct: 1346 GLTQTGKLHHKYVNTDKVKLHEILANLIGNALKFTDSSGVVLLNIEETVIAERESLYTFQ 1405

Query: 405  IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
            ++DNG GI+  +   +  +F QGS        G GLGL I +S++A  GG   + S    
Sbjct: 1406 VRDNGKGISREDQERIFEAFDQGSHDHLYGNSGSGLGLTICKSLVAMLGGSLKVDSIENA 1465

Query: 465  GVEVIAILPNTRVLNFIPEDNHESTQYK---CY 494
            G E    L     ++ + E+    T  K   CY
Sbjct: 1466 GSEFSFTL----TMDLLDEEKETDTPVKSCSCY 1494


>gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 953

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 2/241 (0%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
             +  +  K+ F++++SHELRTPL +I G   +I     G L  E  K  +     + + 
Sbjct: 461 ELKRIDRMKTEFVSTVSHELRTPLTSIRGSLGLISGGVAGEL-PEAVKSLVAIATSNCER 519

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L+ LIN++LD  +IE+G+  L+  A  L  ++R+ +   +  A +  +++  +   +   
Sbjct: 520 LIRLINDMLDSEKIESGKLRLNLQAAELKPLLRQALAANEGFAAQHGVKLRLRAPDAALQ 579

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
              D   + QV+ NLLSNAVKF+  G  V V +  T+ +   + + D GPGI E     +
Sbjct: 580 ARIDGDRLMQVMTNLLSNAVKFSPAGSTVEVMLSRTARQ-VRVEVSDQGPGIPEAFRNRI 638

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
              F Q   +    + G GLGL I++ ++ + GG+    S    G      LP  R    
Sbjct: 639 FQKFSQADSSDTRQKGGSGLGLNISRGLIESMGGRIGFNSNGGAGTTFFFELPEWRDPAQ 698

Query: 481 I 481
           +
Sbjct: 699 L 699


>gi|237748972|ref|ZP_04579452.1| two-component sensor histidine kinase [Oxalobacter formigenes
           OXCC13]
 gi|229380334|gb|EEO30425.1| two-component sensor histidine kinase [Oxalobacter formigenes
           OXCC13]
          Length = 877

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 139/307 (45%), Gaps = 9/307 (2%)

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228
           PV   L   ++      ++ L   ++  + +     Y + +               + E+
Sbjct: 285 PVSEMLGVHSLKEPVTHEVRLKNPISGKVCWMLASLYPVREKADDFGDRYILVISDLTEI 344

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
              + +  +    A+  N AKS FL+ MSHE+RTP+NAI+G + +    T    +    +
Sbjct: 345 RKTQEVLKDALVNAQNANNAKSTFLSRMSHEIRTPMNAIIGMTAIA---TTALNDRSKIE 401

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
             +  I  S +HL+ LIN++LD+S+IE+G+  L+     L D++     ++  +A  K  
Sbjct: 402 NCLSKIAFSSRHLMMLINDVLDMSKIESGKLTLTYEPFELSDLISNIGSIIYPQAAFKKQ 461

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403
           E    ++ S   +  D     Q+++N+LSNAVKFT   G + + +     R         
Sbjct: 462 EFEINVNVSHECLTGDVLRTNQILINILSNAVKFTPEKGHIRLRIEEMKKRFDSRVWLRF 521

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I D+G G++   I  + T F Q         +G GLG+PI  +++    G   ++S++ 
Sbjct: 522 TISDDGCGMSAEFIEKIFTPFEQ-ETRTTRLVEGTGLGMPITGNLVTLMDGAINVQSEVD 580

Query: 464 EGVEVIA 470
           +G     
Sbjct: 581 KGSIFTV 587


>gi|213582822|ref|ZP_03364648.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 610

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
               +L  L++ +LS  +          P+     + Q ++   +          + L  
Sbjct: 31  IGLVILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDT 90

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS-------DETRKRAEEENLAKSRF 252
            + +      +  K+   +   +DL  ++    +          + R  AE+ N AKS F
Sbjct: 91  ISRLMEAFRANVRKLNRHR---EDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTF 147

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPL  ILG  +++  + +       Y++ +  I+ SG+ LL ++N+ILD S
Sbjct: 148 LAAMSHEIRTPLYGILGTVQLLADKPLMA----NYRDDLQAINDSGESLLAILNDILDYS 203

Query: 313 RIEAG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            IE G     +SE       ++   + ++  R Q   + +       L  ++  D + +R
Sbjct: 204 AIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQ---VALITDFSEQLPSTLQGDPRRIR 260

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA KFT   G + +   +   +  +I ++D G GI E ++  +   F Q + 
Sbjct: 261 QIVINLLSNAAKFTDR-GSIVLRT-FCDDQSWFIEVEDTGCGIPEAKLTAIFKPFVQATG 318

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                  G GLGL I+ S+    GG   + S L  G      LP        
Sbjct: 319 CR----GGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVRHPKPAS 366


>gi|109898421|ref|YP_661676.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700702|gb|ABG40622.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1042

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRK--RAEEEN 246
             LA + S        +    +       E+     +++ A +  +E    +    ++ +
Sbjct: 453 IFLALSFSPIANSEDRIEGIAIIARDVTQERIAD-EKIKQANAELEEKVALRTVELQKAS 511

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS F++++SHE+RTPLN I+G   +++ E +    +E  + YI     S   L  L+N
Sbjct: 512 GIKSAFISNISHEMRTPLNGIIGTLNLVKREHL----SENQQRYIEMTEVSVNTLSTLVN 567

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADE 365
           ++LDLS+IEAG+ +L     + ++++      + ++AQEK +E    +   +  S+ +D 
Sbjct: 568 DVLDLSKIEAGKLDLDIKPFNPVNLIESLCGSMAVKAQEKGLEFIIDVSALNYQSMVSDP 627

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLT 422
               Q++ NL++NA+KFT   G + V+            + +I D+G GIA+     + +
Sbjct: 628 HRFSQILTNLVNNAIKFTET-GYIKVSAHTELVKDKVHLHCAIADSGEGIAKENQDKLFS 686

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +F Q   ++ S   G GLGL I + ++    G+    S+  +G      +
Sbjct: 687 AFSQADSSVASKHGGTGLGLSICRQLVTLLKGEVNFTSQKNQGSVFYFSI 736


>gi|312881107|ref|ZP_07740907.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310784398|gb|EFQ24796.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 695

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 15/260 (5%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I   + A+ +    ++ AE  + AKS F+A +SHE+RTPLNAILG++++++         
Sbjct: 349 ITPRKQAEEILRHAKENAEAASRAKSTFVARISHEIRTPLNAILGYTQLLKEREEVRALP 408

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +E++  + RSG HLL ++ ++L++SRIEAGR  L E       ++ +   ML+LRA+
Sbjct: 409 GELREWLDTVSRSGHHLLTVVEDVLEMSRIEAGRLVLQERDFDPRALLGQIEEMLRLRAE 468

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK++ +F +   +L   + ADE  +RQV++NL+ N++KFT   G V ++VGWT   G   
Sbjct: 469 EKSLRLFLERTDTLPRSLHADEGKVRQVVINLVGNSLKFTTQ-GSVTLSVGWTPLEGSWE 527

Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
                 +I ++D GPGI  G    +   F +G         G GLGL I++      GG 
Sbjct: 528 APRVKVWIRVEDTGPGIPLGLTDKLFEPFERGLEGR----GGTGLGLAISRQFARFLGGD 583

Query: 456 FLIR-SKLREGVEVIAILPN 474
            ++  +    G   +   P 
Sbjct: 584 LILERNAPGRGCSFLFTFPA 603


>gi|300857303|ref|YP_003782287.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437418|gb|ADK17185.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 471

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 136/281 (48%), Gaps = 9/281 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++   L    ++   + K  V+       KD++    +    ++D      E+    +  
Sbjct: 197 IIINPLKKINHVADKISKGEVEKRVHIESKDEIGELAKSFNIMAD----SLEKVEKHRRE 252

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHE+R+P+ +I GF   +     G +  E    Y+   +   Q L  L+N++LDL
Sbjct: 253 FISNVSHEIRSPITSIKGFIGGMID---GVIPAEKQNYYLSVTYSEIQRLTRLVNDLLDL 309

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S IEAG ++L    + + +I+R C+I  + +   K +++   ++ +   V AD+  + QV
Sbjct: 310 SAIEAGEFKLRIEEVDINEIIRLCVIKFETKINNKKLKVDVLLEDNKLYVAADKDRITQV 369

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+ NA+K++ IGG + V+     G    +S+ ++G GI E ++  +   F +   + 
Sbjct: 370 VTNLVDNAIKYSDIGGNIKVSTK-VKGEKAVVSVYNDGSGIPESDLKHIWDRFYKVDKSR 428

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            S     GLGL I +SI+   G      +K  +G+     L
Sbjct: 429 TSKVS-TGLGLSIVRSILTQLGEDIWAENKEPKGIMFTFTL 468


>gi|256848038|ref|ZP_05553482.1| two-component histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715098|gb|EEU30075.1| two-component histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 488

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 139/333 (41%), Gaps = 13/333 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L+A+   +  +          F  ++       ++++ ++   LA  L   +      T 
Sbjct: 158 LVAVVNISTFSSTARQIYGQIFHRMLWDFVIALVVAL-LVSYVLARSLTRRIDKMKTATN 216

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSD--ETRKRA--EEENLAKSRFLASMSHELR 261
            + + N  I      KD+L    E    ++D  +  +    E+E   K  FLA  +HE+R
Sbjct: 217 QIAQGNYDIHLSSQGKDELAELSENFNKMADSLQASQEEIKEQEERRK-EFLADAAHEMR 275

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  I G  E +       +  E  K  +  + +  + L+ L+N+ L+  +I   + ++
Sbjct: 276 TPLTTINGLLEGL---IYDAIPEEDRKHSLELMQKDTKRLIRLVNDNLNYEKIRTNQIKM 332

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                   +++      L+  A+E+  +I  +  P     +AD     Q++ N++ NA++
Sbjct: 333 DRQIFDASEVLANLKDQLEPNAREQGDQIVIQT-PHPLRTYADYDRFVQIMFNIIQNAIQ 391

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGL 440
           FT   G++ +         Q  +I+D G G+ E ++  +   F +   +   +     G+
Sbjct: 392 FTQQ-GKITIRGERLPKGAQ-FTIQDTGIGMTEEQLKNIWERFYKADRSRMNTKYGESGI 449

Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           GL + + ++  H G+  ++SK+  G       P
Sbjct: 450 GLSLVRQLVKLHHGKITVQSKVNRGTTFTIYFP 482


>gi|256060446|ref|ZP_05450617.1| histidine kinase [Brucella neotomae 5K33]
 gi|261324437|ref|ZP_05963634.1| histidine kinase [Brucella neotomae 5K33]
 gi|261300417|gb|EEY03914.1| histidine kinase [Brucella neotomae 5K33]
          Length = 438

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 150/385 (38%), Gaps = 22/385 (5%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML--PYAV 163
           W   +L+  + +G  W    +   G    E + + + A+  +A         +L  P  V
Sbjct: 47  WFRAILLALVVLGAVWAAAGI---GNGEDEKVPLREVASREMAAVSGERLADLLTDPMIV 103

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F     V  A          + + +   +   A      I   +     + +        
Sbjct: 104 FDHTATVRFANVAALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPI 163

Query: 224 LIAELEVAKSLSDET----------RKRAE--EENLAKSRFLASMSHELRTPLNAILGFS 271
                 + K+L D            R ++E    +  +S F+A+ SHELRTPL ++ GF 
Sbjct: 164 DRWYKAMVKALRDAEGKPELFVLIFRDQSETRRIDRMRSDFIANASHELRTPLASLRGFI 223

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E ++       +      ++  + +  + +  LI+++L LSR+E   +     +  +   
Sbjct: 224 ETLQ--GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESGDVAAT 281

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           +      L   A    + I + +      V      + QV  NL+ NA K+   G RV +
Sbjct: 282 LAHVADTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVII 341

Query: 392 TVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
            +             SI+D GPGIA   +P +   F +  +    A +G GLGL I + I
Sbjct: 342 RLSEEDTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHI 401

Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473
           +A H G+ ++RS+L EG   +  LP
Sbjct: 402 LARHRGRLVVRSQLGEGSTFMVRLP 426


>gi|168206570|ref|ZP_02632575.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661961|gb|EDT14644.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 791

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +   S     ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNI-SNDWVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|169343152|ref|ZP_02864177.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169298790|gb|EDS80865.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 791

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +   S     ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNI-SNDWVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 547

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 2/230 (0%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              KS F++ +SHELR+PL +I G   ++     G L +   +  +   HR+   L+ +I
Sbjct: 303 ERMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPS-KARALLEISHRNADRLVLII 361

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+ILDL +I  G+ E +     + +++RE         Q   + I  +   +   V  D 
Sbjct: 362 NDILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQRHGVRIQVENTDTPMQVTTDP 421

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV+ N LSNA KF+  G R+ +     +     IS+ D G GI   E   V   F 
Sbjct: 422 NRVIQVLTNFLSNAAKFSKPGERITIRAE-ENDHELRISVSDRGQGIPASEEHKVFQRFA 480

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             S + ++ + G GLGL + ++I+ N GG+    S+   G      LP  
Sbjct: 481 DLSNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGFGTTFYFTLPKK 530


>gi|323691916|ref|ZP_08106168.1| hypothetical protein HMPREF9475_01031 [Clostridium symbiosum
           WAL-14673]
 gi|323504032|gb|EGB19842.1| hypothetical protein HMPREF9475_01031 [Clostridium symbiosum
           WAL-14673]
          Length = 710

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 34/328 (10%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
            +   P+ +   +      +V+ + L  +L  A     +I+Y++ K     L        
Sbjct: 276 IVITVPISITARSTFDGMRNVITMILFTLLTVAAMALVWISYYVKKGQQIKL-------- 327

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
                E AK+               KS F+  +SH++RTPL A++G ++++      P  
Sbjct: 328 -----EQAKAAL-------------KSDFMNKVSHDIRTPLTAVIGLNDLLLHNADKP-- 367

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +   E      +SG++L+++IN++LDLSRIE G+  LS+ A  + +++   + +    A
Sbjct: 368 -DIVAECAQKAKKSGEYLVSIINDVLDLSRIECGKLRLSQKAFDMKELLETVVQLEVYPA 426

Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400
            EK +        +       DE  ++Q ++NL+SNA+KFT   G V +T    +  G  
Sbjct: 427 AEKALNFRLDCPENFHRGFSGDEVRIKQCLINLVSNAIKFTPEQGTVTLTYREQTESGGY 486

Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
              Y +++D G G++E  +  +   F Q   ++ S+  G GLGL I  S++    G    
Sbjct: 487 TKAYFAVEDTGIGMSEAFMKQMFHPFEQEQSSLTSSHVGSGLGLAIVHSLVTLMNGTIHA 546

Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNH 486
            SKL +G   I  LP  R     P    
Sbjct: 547 ESKLNQGSRFIIELPLERTRLSEPVPEQ 574


>gi|228945600|ref|ZP_04107950.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814118|gb|EEM60389.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 293

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D+G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDSGIGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 235 IFERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|229184193|ref|ZP_04311402.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1]
 gi|228599308|gb|EEK56919.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1]
          Length = 293

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 6/235 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGIGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F +   +   A  G GLGL I Q ++  H G+  + S+   G E I  +P 
Sbjct: 235 IFERFYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 289


>gi|298247019|ref|ZP_06970824.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549678|gb|EFH83544.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 4/233 (1%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +E +  K  FL   SHEL+TPL ++   ++++  + +G  +    +     +      + 
Sbjct: 404 QELDQRKDAFLGMASHELKTPLASLKLQTQLLCKK-LGKQDLSNVEVVCARMEGQLNAIT 462

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L++E+LDLSRI+AG+ E +   + L  +++E + +LQ    +    I  +       V 
Sbjct: 463 RLVDELLDLSRIQAGKLEYAHEMVDLDAMLKEVMDVLQHI--QTTHTIVVQHAAPPVFVV 520

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D   + QV LN+LSNA+K+     ++ VT+  TS     ISI+D G GI       +  
Sbjct: 521 GDRDRLAQVFLNVLSNAIKYAPDAPQIEVTLT-TSAEAVTISIRDQGIGIPRELQGRIFE 579

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +     + A  G+G+GL I   I+ +HGG   + S+  +G       P  
Sbjct: 580 RFYRAVPLQQRAFPGLGMGLYIVSEIVKHHGGTIRVESERGKGSTFHITFPLA 632


>gi|78213638|ref|YP_382417.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
 gi|78198097|gb|ABB35862.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
          Length = 688

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 161/466 (34%), Gaps = 47/466 (10%)

Query: 56  VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV----WRIWLL 111
            L  A +    T      +W L+ L      L++ + V      +  V       R+ L 
Sbjct: 203 ALASAALTREVTVAVFISIWVLVILGAVFNALTITRPVKELLRGVRSVASGNFGARVDLP 262

Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171
           VG     L      +        E      +A  +   S+ A                + 
Sbjct: 263 VGGELGELLTGFNAMASQLEAYDEANIEELTAAQVKQQSLIATMADGAMLLDADGRIVLA 322

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              + +              +          +   L          +  +  +       
Sbjct: 323 NPTARRLFRWEGRSLEGQELVGELPELLAIELHSPLDALLGGGSDSEDLRCSVGEPARTL 382

Query: 232 KSLSDETRK-----------------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
           + +    R                  R  E N A+SRF++++SHELRTPL  I  + E +
Sbjct: 383 RIVLQAVRDASGETLKGIAVTIQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETL 442

Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                  L+ +  KE++G  +     L  L+N++LDLSR+E+GR  L    IS+   + +
Sbjct: 443 HD-LGDQLSPDEQKEFLGVANDETDRLTRLVNDVLDLSRLESGR-TLQFEPISMRPAMEQ 500

Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
            +   +L A+++ +E+   +   L  V  +   + QV+ NL+ NA+KF+  GG + +   
Sbjct: 501 TLRTYRLNAEDREVELVLDVPEDLPDVLGNWDLLLQVLDNLMGNALKFSRPGGPLALRAY 560

Query: 395 WTSGR-----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
                                          + I D G GI+  +   +   F +   A+
Sbjct: 561 PWPDTCSVEGTAITGTDGPTCALTSPLPKLRVEIADTGCGISSTDQERIFDRFFRVENAV 620

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +   G GLGL I + I+  HG Q  + S+   G      LP  + 
Sbjct: 621 HTEV-GTGLGLSIVRGILEKHGAQVQMASEPEVGTTFWFDLPLAKA 665


>gi|146297007|ref|YP_001180778.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410583|gb|ABP67587.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 467

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           ++ E   + +  F++++SHELR+PL +I GF E I       + +E    Y+  +     
Sbjct: 238 EKLENLEMMRKSFISNVSHELRSPLTSIRGFIEGILDR---TIPDEKRDFYLNLVREEVI 294

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L NLIN++L+LSR+E G+  L+ S   +  ++ E +I  + R +EK IE+F +++ +L 
Sbjct: 295 KLNNLINQLLELSRLEWGKINLNLSTFKIYSVIAEELIKFEKRIEEKKIEVFLEVNENL- 353

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            V AD   + +V+ NLL NA+K+  +GG++++          YI+I+D G GI E     
Sbjct: 354 MVKADRDLISRVVHNLLDNAIKYNKVGGKIYI-YSEVENGKAYITIQDTGIGIPEKLQKL 412

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           +   F +   +    E+GVGLGL I + I+  H     + S+   G +    L
Sbjct: 413 IWERFYKVDESRS-LEKGVGLGLSIVKEIIKLHKQNIWVESEEGVGTKFTFTL 464


>gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 865

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 145/342 (42%), Gaps = 24/342 (7%)

Query: 162 AVFLSFFPVVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           A++ S  P    L  QA M S      +   +      + T+  Y ++   +  L+    
Sbjct: 255 AIYTSLTPGTYTLQVQAAMGSTSWGTTAEWQITVEPPLWKTWWAYAIY--LIAALTLLYY 312

Query: 221 KDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
             +L    + ++ ++++    R++ +  +  K RF  ++SHELRTPL  I+   E++  +
Sbjct: 313 IIELYIADKRSRMMAEQENLKRQKEQHLDELKFRFFTNISHELRTPLTLIITPLELLIRK 372

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
                   + K  +  I  + + LL L+N++LD  R+E    +L    + +   + + + 
Sbjct: 373 AGDS----SLKNDLEKILGNARDLLRLVNQLLDFRRLEQKGEQLKLLTVQIKPFIEDNVN 428

Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
                A E++I +  +           D + M +V+ NLLSNA+KFT  GG + V  GW 
Sbjct: 429 HFCQLAYERHIGLSCECAFGQEDLFRLDAEKMTRVLNNLLSNAMKFTPEGGFITVQAGWQ 488

Query: 397 SG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSI 448
                     G  I++ D G GI   ++  +   F Q           G G+GL + +  
Sbjct: 489 ESSPAGEGPNGICITVSDTGIGIPAEDLKNIFVRFYQSEGTQSHPMNTGSGIGLHLVKGY 548

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490
           M  H G+  + S   +G     +LP        P+ +  ++Q
Sbjct: 549 MDLHKGEITVESTPGKGTRFTLLLPA-----QPPQTSSSNSQ 585


>gi|308271627|emb|CBX28235.1| hypothetical protein N47_G35590 [uncultured Desulfobacterium sp.]
          Length = 487

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
            R +E +  K  F++ +SH+LRTPL AI   S ++          E  +E    I    +
Sbjct: 255 DRLKELDDLKIDFISHISHKLRTPLTAIQEASGMLLEGIF-AGKPERQQELYSIIKDECK 313

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L+  +N ILDLSR+EA   +       ++ I+R+ I+ L   AQ++ IE+      SL 
Sbjct: 314 RLIVEVNRILDLSRMEAKMMDYHFDVTDIMPIIRKNILKLSHLAQKRGIELNMCPVNSLP 373

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            +  D++ + QV+  LL NA+KFT   G+++++          IS+ D G GI E E+  
Sbjct: 374 PINIDQERILQVVEELLGNALKFTPEKGKINISAILNEKGMIEISVTDTGYGIPEMELGR 433

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           V   F +       AE+G GLGL IA+ I+  HGGQ    SK  +G      LP 
Sbjct: 434 VFEKFKRIEGGRA-AERGTGLGLSIAKHIITVHGGQIWAESKPGKGSTFSFTLPV 487


>gi|167574777|ref|ZP_02367651.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           oklahomensis C6786]
          Length = 1138

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
           ++      P  L +   A+L+ A+     S   L ++   +   V       A+    + 
Sbjct: 556 VLPGARLGPAALRLIHYASLVFAMLAVLGSVLYLIWSQSANSMSVAGPSIGHALSGSFLK 615

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEE 244
                 ++    +++  +     +   +    Q E   L I   +   +        AE 
Sbjct: 616 IFFALSLVGCIAAWWFVLERENRRVTQEESQRQNELLMLEIDAHQKTDAALKRATAAAES 675

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKSR+++ +SHELRTPLN+ILG+++++                +  IHRSG+HLL L
Sbjct: 676 ANRAKSRYVSGLSHELRTPLNSILGYTQLLLQ--AREELTPMRYNAVRTIHRSGEHLLAL 733

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           ++ +LD++RIEAG+ +L+ + ISL D V     ML+ +A EK +    +    L  +V  
Sbjct: 734 VDGLLDIARIEAGKLQLNIAKISLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRT 793

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D+K M Q++ NL+ NA++FT+  G + + V           + D GPGI   E+  +   
Sbjct: 794 DQKCMSQILTNLIGNAIRFTSS-GTITLRVSHVLD-TLKFEVIDTGPGIPPAEMERLFLP 851

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483
           F +G  A      G GLGL I + +    GG   + S++  G   +  L     ++   E
Sbjct: 852 FERGEAAHAYDH-GAGLGLTICRLLTQALGGSLEVDSEVGHGTRFMVRL-FAPAVDTAAE 909

Query: 484 DNHESTQYKCY 494
            + E    + Y
Sbjct: 910 THAELASIRGY 920


>gi|154502607|ref|ZP_02039667.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
 gi|153796799|gb|EDN79219.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
          Length = 361

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 161/354 (45%), Gaps = 13/354 (3%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
           +L  +   G +      +    T LI    SA  N  +   V + ++ +V    T  + +
Sbjct: 14  SLFPVSLFGIYIGVLFLMSGIHTGLIVFMNSAGWNKAVMTVVPMCYWGMVAMGLT--LFT 71

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
              +  +    L         +    F   V       ++D L   +     + +E    
Sbjct: 72  RWKVKRTYEEPLYKMAEATRKVANGDFSVYVPTFHTMEKRDYLDVMILDFNKMVEE---- 127

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                  K+ F++++SHE++TPL+ I  ++E+++ + +   + E  +EY   I  +   L
Sbjct: 128 LGSIETLKTDFVSNVSHEMKTPLSIIKNYAELLQRDAL---SEEQRREYGEAIENTATRL 184

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            +LI+ IL L+++E  + +       +   + +CI+  +   ++K IE+  +++   + +
Sbjct: 185 SDLISNILKLNKLENQKIQPEAEVYDVCRQLCDCILQYESAWEKKEIEMEVEME-DRAEI 243

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           +AD+  M  V  NLLSNAVKFT +GG + V    +  +G  IS+ D G G+++  +  + 
Sbjct: 244 YADQDLMELVWNNLLSNAVKFTELGGVITVR-QLSDEQGVTISVSDTGCGMSKNTMKHIF 302

Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
             F QG  +    ++G GLG+ + + ++    G+  + S+ ++G   I  LP  
Sbjct: 303 DKFYQGDTSHS--KEGNGLGMAMVKRVLELMDGEIQVLSEEKQGSTFIVTLPMA 354


>gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I]
 gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I]
          Length = 1238

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I E         + ++ A+  N AK+ FLA+MSHE+RTP+NAI+G  E+     + P + 
Sbjct: 696 ITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRPTDQ 752

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           E  ++ I   + S + LL LI +ILD+++IEAG+++L+    +L  +    I +    A+
Sbjct: 753 EPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLAR 812

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400
           +K IE+  K D   +  V  D   M+QV+ NL+ NA+KFT   G+V + V          
Sbjct: 813 QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTE-GQVVLAVTARPDGDAAH 871

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              S+ D G GI+E +   +   F Q   +       G GLGL I++ ++   GG  ++R
Sbjct: 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931

Query: 460 SKLREGVEVIAIL 472
           S    G  V   L
Sbjct: 932 SAPGVGTTVSVDL 944


>gi|332882602|ref|ZP_08450214.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679402|gb|EGJ52387.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 820

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 20/255 (7%)

Query: 239 RKRAEEENLAKS--------RFLASMSHELRTPLNAILGFSEVIELETMGPLN-NETYKE 289
           R+R E  N  KS        + ++ +SH+LRTPL++I+G+SE++     G L+  E  K 
Sbjct: 302 RRRLEAANR-KSNNLLKNREQLISMVSHDLRTPLSSIVGYSELL-----GKLDITEKGKN 355

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
           Y+  I  S +++  L++E+LD +RIE+G+  + +   +L +++ E    ++   + K + 
Sbjct: 356 YLSHIKFSSEYISKLVDELLDYTRIESGKVVIEKIPFNLPEVIDEVASNVKSAYKNKEVA 415

Query: 350 IFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--S 404
           +        +  +   D   ++Q++ NL+SNA KFT  G   +             I  +
Sbjct: 416 LSFAFSDIVNNLNFSTDAYRVKQILYNLISNAFKFTEQGTVHIEADARLYKDDIYEIGVA 475

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI E +   +   F Q +  I     G GLGL I+Q +     G+  + S+  +
Sbjct: 476 VTDTGIGIKEEQQEHIFNEFTQANDEISKFYGGFGLGLHISQKLARLLNGKIYLESEEGK 535

Query: 465 GVEVIAILPNTRVLN 479
           G          +V+ 
Sbjct: 536 GSTFTLRFLAEKVVE 550


>gi|282165286|ref|YP_003357671.1| putative histidine kinase [Methanocella paludicola SANAE]
 gi|282157600|dbj|BAI62688.1| putative histidine kinase [Methanocella paludicola SANAE]
          Length = 589

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 148/316 (46%), Gaps = 6/316 (1%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
           ++   +  ++ +   D  L  M         +   +  +S + +    A   D     + 
Sbjct: 279 MLGWVSAIVLPLISRDRVLGVMWLYTTDRMVHFDDNDRRSAIALSDQAANVIDAARIHK- 337

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
                +E+ ++ ++ +  K  F   +SHELR PL  I G++E++   T+GP+ N+  K+ 
Sbjct: 338 ---ELEESYEKLKDLDRTKMEFFTLISHELRNPLAIIKGYTELLYDGTLGPI-NDKQKDK 393

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  +  +   L +++ ++ ++S +E+ +Y +    +SL D+V E    +    Q K I +
Sbjct: 394 LARVRENVDKLADMVGKMSEISSLESRKYTVDRVPVSLGDMVSEIAETMGFLFQNKRITL 453

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
              I  +L  V  D K M QV+LNLL+NA+K+T  GG V VT          +S+ D G 
Sbjct: 454 NVDIPENLPLVEVDRKKMEQVLLNLLNNALKYTPEGGHVTVTAEDRPAD-ILVSVWDTGI 512

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI + ++  + + F      +    +G GLGL I++ I+  HGG+   +S++ +G     
Sbjct: 513 GIPQKDLDKIFSGFYHSGYKLSYEYKGPGLGLAISRKIIEGHGGRIWAKSEVGKGSTFYF 572

Query: 471 ILPNTRVLNFIPEDNH 486
            +P   V +   E   
Sbjct: 573 TIPKRTVASGSAEAKT 588


>gi|293433288|ref|ZP_06661716.1| TMAO reductase system sensor TorS [Escherichia coli B088]
 gi|291324107|gb|EFE63529.1| TMAO reductase system sensor TorS [Escherichia coli B088]
          Length = 914

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|254721257|ref|ZP_05183047.1| sensor histidine kinase ResE [Bacillus anthracis str. A1055]
          Length = 591

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 21/251 (8%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K + + 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVALT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + +  T   G    ++D+G G
Sbjct: 466 VDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVID-TKNNGLIFEVQDSGAG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I E +IP +   F +   A                    IA++I+  HGG+  + S + E
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVVGE 578

Query: 465 GVEVIAILPNT 475
           G      LPN 
Sbjct: 579 GTTFSVYLPNR 589


>gi|221066121|ref|ZP_03542226.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711144|gb|EED66512.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 465

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 150/450 (33%), Gaps = 26/450 (5%)

Query: 51  ILPLFVLLVANIGTWFTQNPIFPMWSLI----TLAVYAANLSLGKKVMNSDIKIGEVYVW 106
              L   + A +  W     +    + +      A+  A +      +        +  W
Sbjct: 6   FRLLASQIAAAMVLWLLWAYLVAPDATVGQQTVAAMAGALIGGWIWWLVDSWNGARLLRW 65

Query: 107 RIWLLVGQIAI-GLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAV 163
                +G +      W    +            + +    L  I  ++ A  N ++    
Sbjct: 66  LRQSELGAVPNLAGIWGEAGVRMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDA 125

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-------LFKSNVKILS 216
                      + Q         +   G L     F  Y           +         
Sbjct: 126 QGRIEWCNQIAAKQFGFDAERDVLQSIGNLVRNPQFSAYFVAQDFTHDLVMQGRESTPSR 185

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
                  L    E  K L        E+    +  F+A++SHE+RTPL  + GF E ++ 
Sbjct: 186 PVKLSVQLYGYGEGRKLLLARDVTALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQN 245

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
               PL       Y+  + +  + + +L+ ++L LSR+E      +   +S+  ++  C 
Sbjct: 246 L---PLEEAERNRYLELMAQQAERMQHLVEDLLTLSRLEGSPLPGNNDWVSVAQLLTRCE 302

Query: 337 IMLQ----LRAQEKNIEIFQKIDPSLSSVWADEKG-----MRQVILNLLSNAVKFTAIGG 387
              +       ++++               A E       +     NLL+NA+++T  GG
Sbjct: 303 NEARGLSNALTRKQSKPHVLNFPDEQVLRQAGELAGASAELHSAFSNLLANAMRYTPAGG 362

Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
           ++ V            ++KD+GPGI E  +  +   F +   +      G GLGL I + 
Sbjct: 363 QIDVRWQLLPDGSARFAVKDSGPGIDERHVSRLTERFYRVDRSRSRDTGGTGLGLAIVKH 422

Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRV 477
           ++  HG +  I S+L +G E     P  RV
Sbjct: 423 VLQRHGAKLSIESELGKGSEFAVTFPPGRV 452


>gi|153947703|ref|YP_001401134.1| sensor histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959198|gb|ABS46659.1| sensor histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 1286

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         N 
Sbjct: 669 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSNR 723

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  +A+     +     + Q  A 
Sbjct: 724 PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPIAN 783

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT   G V V + W     Q+ 
Sbjct: 784 ERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPSDEQHG 842

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 843 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIALE 902

Query: 460 SKLREGVEVIAILPN 474
           S+L +G  ++  LP 
Sbjct: 903 SQLGKGTSLLITLPL 917


>gi|312794584|ref|YP_004027507.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181724|gb|ADQ41894.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 565

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 20/239 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  + +F+A +SHELRTP+  I  +SE +        +    K+++  I +    +  L
Sbjct: 339 LDRMRKQFVADVSHELRTPITTIKTYSETLLD----VDDETVKKKFLNVIIKECDRMTRL 394

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I+++L LSR+++G   L    +++ ++VR     +++ A++KN ++      ++  + AD
Sbjct: 395 ISDLLYLSRLDSGENILKIEEVNISELVRFVCEKMRIHAKKKNQKLLCSTQENVV-IEAD 453

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              + QV++NL++NAV +   GG++ V +         I++KDNGPGI E ++P +   F
Sbjct: 454 RDRLEQVLINLINNAVVYVQEGGQIEVGLEKDEEH-VRITVKDNGPGIPEEDLPRIFERF 512

Query: 425 GQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
            +   A                    IA  I+  HGG+ L+ SK   G +   +LP  +
Sbjct: 513 YRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKILVESKEGVGTKFTVVLPIKK 564


>gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1171

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
           +  ++ +L KS F++++SHE+RTPLN I+G   ++  +++     E    Y+     S  
Sbjct: 502 QELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKDSL----TERQARYLEMAEVSVN 557

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSL 358
            L  LIN++LDLS+IEAG+ +L  S+ + ++++      + ++AQEK IE    + D   
Sbjct: 558 TLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVIDVVDLRC 617

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYI-SIKDNGPGIAE 414
            SV +D   + Q++ NL++NA+KFT   G + V        +G  ++I  + D G GIAE
Sbjct: 618 QSVDSDPHRITQILTNLINNAIKFT-DHGYIKVRAHSRLRETGELEFICEVSDTGIGIAE 676

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
                + T+F Q + +I +   G GLGL I + +     G+    S   +G   I  
Sbjct: 677 ENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSFESHKGQGSCFIFT 733


>gi|323693798|ref|ZP_08107992.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum
           WAL-14673]
 gi|323502145|gb|EGB18013.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum
           WAL-14673]
          Length = 466

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 139/344 (40%), Gaps = 7/344 (2%)

Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189
           G +T E   + +   +   L +     + L          +  +L      ++ ++ +  
Sbjct: 126 GGYTEEQYPLIQDGKVTGTLKLGYYGPYSLSDGELELMKSLDKSLLIIGAAALCIVAVLG 185

Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249
             +        T +     +        QAEK+  IAE  +     +E   + EE    K
Sbjct: 186 MLIARAVTDPVTGVIRTAQRIAGGEYGTQAEKNSSIAETALLIEAINEMSLKLEENEKQK 245

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            R  + ++HELRTPL  +    E +                +   H     L+ ++ ++ 
Sbjct: 246 RRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTA-----RLESCHAEILRLVGIVEQLQ 300

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
           +L  +E       +      ++  E     +++A+EKNI +   + P    ++AD   ++
Sbjct: 301 ELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTP-IYADYYRLK 359

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q ++NL+SNA+ +T  GG + V           I ++D+GPGI E +I  +   F +   
Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMRE-GHVEIKVRDDGPGIPEEDISHLFERFYRVDK 418

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +      G+G+GL I ++I+  HGG+    ++  +G      LP
Sbjct: 419 SRSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462


>gi|163793563|ref|ZP_02187538.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181365|gb|EDP65880.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1217

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N ++  +E+++   +    +   +     I +S + LL +IN+ILD S+I
Sbjct: 573 TMSHEIRTPMNGVMSMAELLDHTVL----DGEQRGMTRVIRQSAEALLTVINDILDFSKI 628

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           EAGR  +      L ++V +   +L  RA +  +++  ++ P+L   V  D   +RQ+++
Sbjct: 629 EAGRLPIERVPFELGELVEDVAELLAPRADDHGLDLIIELAPNLPERVLGDPTRLRQILV 688

Query: 374 NLLSNAVKFTAIGGRVHVTVGWT---SGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGS 428
           NL  NAVKFT   G V +        +G    +   + D G G+ + ++  +   F Q  
Sbjct: 689 NLGGNAVKFTEA-GSVRIAARPDVPVAGDTLRLCLEVTDTGIGMTDEQMTRLFEPFAQAD 747

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            +      G GLGL I   +     G   + S    G      LP   V +  P
Sbjct: 748 SSTARRFGGTGLGLSICLRLAELMDGAITVSSVPDAGSTFRVELPLG-VADPAP 800


>gi|213609422|ref|ZP_03369248.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 758

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
               +L  L++ +LS  +          P+     + Q ++   +          + L  
Sbjct: 179 IGLVILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDT 238

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS-------DETRKRAEEENLAKSRF 252
            + +      +  K+   +   +DL  ++    +          + R  AE+ N AKS F
Sbjct: 239 ISRLMEAFRANVRKLNRHR---EDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTF 295

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPL  ILG  +++  + +       Y++ +  I+ SG+ LL ++N+ILD S
Sbjct: 296 LAAMSHEIRTPLYGILGTVQLLADKPLMA----NYRDDLQAINDSGESLLAILNDILDYS 351

Query: 313 RIEAG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            IE G     +SE       ++   + ++  R Q   + +       L  ++  D + +R
Sbjct: 352 AIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQ---VALITDFSEQLPSTLQGDPRRIR 408

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA KFT   G + +   +   +  +I ++D G GI E ++  +   F Q + 
Sbjct: 409 QIVINLLSNAAKFTDR-GSIVLRT-FCDDQSWFIEVEDTGCGIPEAKLTAIFKPFVQATG 466

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                  G GLGL I+ S+    GG   + S L  G      LP        
Sbjct: 467 CR----GGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVRHPKPAS 514


>gi|213424962|ref|ZP_03357712.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 731

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
               +L  L++ +LS  +          P+     + Q ++   +          + L  
Sbjct: 152 IGLVILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDT 211

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS-------DETRKRAEEENLAKSRF 252
            + +      +  K+   +   +DL  ++    +          + R  AE+ N AKS F
Sbjct: 212 ISRLMEAFRANVRKLNRHR---EDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTF 268

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           LA+MSHE+RTPL  ILG  +++  + +       Y++ +  I+ SG+ LL ++N+ILD S
Sbjct: 269 LAAMSHEIRTPLYGILGTVQLLADKPLMA----NYRDDLQAINDSGESLLAILNDILDYS 324

Query: 313 RIEAG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369
            IE G     +SE       ++   + ++  R Q   + +       L  ++  D + +R
Sbjct: 325 AIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQ---VALITDFSEQLPSTLQGDPRRIR 381

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           Q+++NLLSNA KFT   G + +   +   +  +I ++D G GI E ++  +   F Q + 
Sbjct: 382 QIVINLLSNAAKFTDR-GSIVLRT-FCDDQSWFIEVEDTGCGIPEAKLTAIFKPFVQATG 439

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
                  G GLGL I+ S+    GG   + S L  G      LP        
Sbjct: 440 CR----GGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVRHPKPAS 487


>gi|153869309|ref|ZP_01998953.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074169|gb|EDN71053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 589

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 12/256 (4%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN------ETYKEYIGDIHRSGQ 299
           + AKS FL+SMSHELRTP+NAILG+SE+++ +    L        E  ++Y+G+I  +G 
Sbjct: 209 SQAKSLFLSSMSHELRTPMNAILGYSELLKEDLGVALEEFELEHVEDMQQYVGNILHAGW 268

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
           HLL LIN++LDL+RIEAG+ E++   + LI++++EC+  +  +A+++ I I  K      
Sbjct: 269 HLLELINKVLDLTRIEAGKLEVTIEKVELIELMKECVSFVSPQAEKRAITIENKTAEIHP 328

Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
                D   ++QV +NLLSNAVK+    G V + +  ++     I + D G G+   +  
Sbjct: 329 VYALVDRGRLKQVFINLLSNAVKYNRDKGSVTINLTQSTLEYVRIEVADTGVGLTTEQKA 388

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            V   F +   +  +  +G G+GL I + ++    G+  + S++  G      +P  ++ 
Sbjct: 389 KVFDPFTRL--SGLNLVEGTGIGLTITKRLLEIMDGRIGVESEIDIGSTFWVEVPVGKLD 446

Query: 479 NFIPEDNHESTQYKCY 494
           N    + + +   + +
Sbjct: 447 NA---EENNAPDLQLH 459


>gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with
           ArcA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 778

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|332879435|ref|ZP_08447131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682625|gb|EGJ55526.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1347

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 13/259 (5%)

Query: 242  AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
            AE+ N  K +F  ++SHE+RTP+  I+G  + +         +E  +     + R+ + +
Sbjct: 819  AEQLNEMKLQFFMNLSHEIRTPMTLIVGPLQHLINTDF----DEIRQRSYRMMSRNAERI 874

Query: 302  LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
            L L+N+ILDL +I+ G+  +    ++L+D VR+   +   +A+EK I    + D     +
Sbjct: 875  LALVNQILDLRKIDKGQMMMKMQPVNLVDFVRDVYELFDSKAREKEIHFHFEYDTDYIEI 934

Query: 362  WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
            W D+K   +VI+NLLSNA KFT   G + + +         + + D+G  I   ++  + 
Sbjct: 935  WLDKKNFDKVIMNLLSNAFKFTPSKGNIGIRLKQ-GEHDVSMEVWDDGLTIEPDKMEKIF 993

Query: 422  TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEVIAILPN------ 474
              F Q          G G+GL + + ++  H G+  +  +   +G     +LP       
Sbjct: 994  QRFYQADNITNYNVAGSGIGLNLTKQLVTLHHGEISVYNNTDGKGCTFKVVLPLGNAHLK 1053

Query: 475  -TRVLNFIPEDNHESTQYK 492
               +L    E+  E +  K
Sbjct: 1054 PEELLQTPIEEKAEESILK 1072


>gi|298245656|ref|ZP_06969462.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297553137|gb|EFH87002.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 737

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               I     L   L           +     L     ++ +   E++    E + A + 
Sbjct: 442 LVAPISRYQKLKGVLLIDYGAQEPLLSGEDDALILGVARLAALLVEREQAQYERDHAVAE 501

Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294
             ++  R E  N  KS  ++ +SHE RT L  I GFSE+++   +        +EY  DI
Sbjct: 502 LQKSNVRLELTNRMKSNLVSIVSHEFRTSLTDIQGFSEILQRNELNLS---EVREYATDI 558

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
               Q L++LIN++LDL R+E    +L  + + L  ++ E +  ++ R Q+       ++
Sbjct: 559 REDAQRLVSLINDMLDLDRLEMDHIQLHLNWLDLNALINEAVARMRRRTQKH--TFRLQL 616

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +L  +W D + +  V++NLL NA+K++  GG + V V        +IS+ D G GI  
Sbjct: 617 ARALPILWGDREKLMIVLINLLDNAIKYSPDGGAITV-VSELEDLCVHISVSDQGVGIPP 675

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E+  V   + +     ++  +G GLGL I + I+  HGG+  + S    G      L
Sbjct: 676 EELEHVFERYKRLPFGPET-VEGRGLGLSIVREIILLHGGKVWVESAQGRGSIFHYTL 732


>gi|326790775|ref|YP_004308596.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541539|gb|ADZ83398.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 484

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 13/312 (4%)

Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226
             PV   +ST     ++V  I L      A+     +   + + N K        + ++ 
Sbjct: 177 IAPVDATVSTIRKQLVYVSLIMLILAFLLAILIAKKVARPIIQINAKAKQLAVGDEAIVF 236

Query: 227 ELEVAKSLSDE------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
           E +  K +++             +    +   +A++SH+LRTPL  I G++E++      
Sbjct: 237 EEKGYKEIAELSGTLSYASVELTKTEKLRRELIANVSHDLRTPLTLITGYAELMRD---- 292

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
            L  E   E +  I    + L  L+N++LDLS+++AG  +L +   +L   + E ++   
Sbjct: 293 -LPTENTPENVQVIVDEAKRLTQLVNDMLDLSKLQAGTSQLEKVTFNLTKQINELLLRYN 351

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
               ++   I    D  +  V  DE  + QVI NL++NA+ +T     V V    T+ + 
Sbjct: 352 TLTAQEGYTIDFIYDEEI-WVNGDELKLSQVIYNLINNAINYTGSDKHVIVKQHVTNDQ- 409

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I + D G GI+E  +P +   + +     K A  G GLGL I ++I+  H   + + S
Sbjct: 410 VRIEVIDTGEGISEEYLPYIWERYYKVDKTHKRATVGTGLGLSIVKTILDAHEAHYGVTS 469

Query: 461 KLREGVEVIAIL 472
            + EG      +
Sbjct: 470 NIGEGSTFWFEI 481


>gi|258626569|ref|ZP_05721405.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
 gi|258581160|gb|EEW06073.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
          Length = 573

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
                  + +S    K++L   +E+        +K AE+ N +KS FLA MSHELRTPLN
Sbjct: 167 RFRPLLERAISDIEHKEELQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLN 226

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           A+LG  +++  ++          E +  +  S + LL +IN+ILDLSRIE+G + L    
Sbjct: 227 AVLGLIDILRSDSTSY-----QVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHW 281

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTA 384
           I L   + + ++  +  AQ+K ++   + + +     + D   + Q++ N++ NA+KFT 
Sbjct: 282 IDLEKKLDQSLVYHRQIAQDKGVQFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTK 341

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             GRV + + +       I ++D G GI    I  + T F Q   +I     G GLGL I
Sbjct: 342 K-GRVDIQLNYIEDG-IDIQVQDTGIGIEPKRIEQLFTPFIQADNSITRNYGGTGLGLAI 399

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474
            + ++   GG   + SK+  G      +P 
Sbjct: 400 TKHLVELMGGTINVDSKIDIGTLFTLRIPL 429


>gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 803

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 180/458 (39%), Gaps = 31/458 (6%)

Query: 31  MDFDREIITLHVES----LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
                  + L+ ++       V+  L    L  A +              ++ LA+   N
Sbjct: 121 RALANSSLELYAQTADEQRAEVAGTLTQLALATAALIG------------VLALAIIYLN 168

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
           L   +       K   +   +  +      + +C     ++E            K+A L 
Sbjct: 169 LLNARVYHREREKNQTMSRMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVLD 228

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + ++ S +    L +A       + +      +  +    + L         F   +   
Sbjct: 229 LNIA-SVIVPDHLLHANEAGMERMRIG---GDMRVIGKGRVRLEAKHKDGHIFPVELAIQ 284

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             K++   +     +D  I+   +A++     R +A      K+ FL++MSHE+RTPLN 
Sbjct: 285 NAKTDEGTIFISFLRD--ISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNG 342

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG   ++    +    NE    Y+G +  SG+ LL+ ++++LD++R +AG+       +
Sbjct: 343 LLGNMNLLRDTEL----NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPV 398

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           ++ +++++ +      A +    +        +  V +D   ++ V++NL+ NAVKFT  
Sbjct: 399 NISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRR 458

Query: 386 GGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G+V VT+            + I D G G++E  I  V   F  G+ A      G GLGL
Sbjct: 459 -GKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 517

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            IA+  +   GG+  + S + EG      LP       
Sbjct: 518 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHEAEAP 555


>gi|226946335|ref|YP_002801408.1| periplasmic sensory histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226721262|gb|ACO80433.1| periplasmic sensory histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 830

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
           A    +       L       +   A     I+ L+  +         A++ + AKSRFL
Sbjct: 526 AGQYVWLLSRGQALEWDARGRVLRSAGTHVDISRLKAVEGDLRRATLEAQDASRAKSRFL 585

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           +SMSHELRTPLNA+ GF+++IELE  G  ++    EY  +I ++ +HL  L+++ILDLS 
Sbjct: 586 SSMSHELRTPLNAVQGFAQLIELEVEGKPDSGPIGEYAREIVKASRHLTALVDDILDLST 645

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E  R +L    + +  ++  C  ++Q   +E+ +++          V AD + ++Q++L
Sbjct: 646 LEGRRQQLHIRPVEVGAMLAGCAELVQPHIRERQLQLQLIPMCRPLYVQADSRRLQQILL 705

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433
           NLLSNA+K+    GR+ +           I +KD GPG+   +   +   F +      S
Sbjct: 706 NLLSNAIKYNCPQGRITLGYE-VRSDCVRIWVKDTGPGLDAEQQSQLFQPFQRLGR-ESS 763

Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485
              G G+GL +   + +   G     S+   G      LP        PED 
Sbjct: 764 NIPGSGIGLVLCHELASMMNGSMGFYSEPGHGCRFWIDLPGA----APPEDQ 811


>gi|78486407|ref|YP_392332.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364693|gb|ABB42658.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 948

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 13/254 (5%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
            ++++ E       + R  AE+ + AKS+FL+SMSHELRTPLNA+LGF++++    M   
Sbjct: 552 RMLSQQEEMHEEILKERNEAEKASQAKSQFLSSMSHELRTPLNAVLGFAQLL---DMDEN 608

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                K+ I +I ++G HLL+LIN++LDL++IE+G  +LS   + L +++ EC  ++   
Sbjct: 609 LTADQKDNIYEIVKAGNHLLDLINDVLDLAKIESGNVDLSIEPVGLKEVLEECRNLMLPV 668

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
           A+ K I +       L  V AD   ++Q++LNLLSNAVK+    GRV V  G  S     
Sbjct: 669 AENKGISLDIPALNDL-YVRADRVRLKQILLNLLSNAVKYNDDHGRVWVECGQQSENTLR 727

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQG----SIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
           IS+KD+G G+ E +   +   F +          +        L I ++++   GG+   
Sbjct: 728 ISVKDSGLGVPENKQSELFQPFNRLGQEGGGIEGTGVG-----LSITKTLIELMGGEIGY 782

Query: 459 RSKLREGVEVIAIL 472
           +    +G      L
Sbjct: 783 QPNTPKGSCFFVEL 796


>gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 468

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/364 (22%), Positives = 149/364 (40%), Gaps = 25/364 (6%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYK------SATLLIALSISALSNFMLPYAVFLSFFPVV 171
           G  W    L  P    P  L +Y        +  +   ++          A    F  + 
Sbjct: 117 GEVWAYAEL--PREGHPLRLLVYARKVEVNLSGSVWKGALLVGRPTEDLEATLSQFARIY 174

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              +   ++    L  SL       L +       +      +   +  +D++ A ++  
Sbjct: 175 AGTALFVLLLSLFLARSLVARALEPLEWAARKAEAMSARPEPLPEPET-RDEVAALVKAL 233

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +      R +E   A++RFL   SHELRTP+ AILG    +          E  +E +
Sbjct: 234 NGMLT----RLQEAFEAQTRFLQDASHELRTPITAILGHVGYLLRR---TPLTEAQRESL 286

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             + R  + +  L++++LDLS  ++G + +    + ++D++ E        A+  + EI 
Sbjct: 287 EVVKREAERMGKLVSDLLDLS--QSGAWRIRPVPVRVLDLLEEVREEF---AKSFDGEIL 341

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +    L  V  D   + QV+ NL+SNA+K  A    V +   +  G    + ++D+G G
Sbjct: 342 VEAPEDL-YVLGDPDRLHQVMANLVSNALKAGAR--HVWLRA-FDLGDKAVVRVEDDGEG 397

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E  +P +   F +   A      G GLGL I ++I+  HGG+  + S++ +G      
Sbjct: 398 IPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILEAHGGEVWVESQVGKGTAFSFS 457

Query: 472 LPNT 475
           LP +
Sbjct: 458 LPAS 461


>gi|83953660|ref|ZP_00962381.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83841605|gb|EAP80774.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. NAS-14.1]
          Length = 347

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 8/235 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL A++GF E +        +      ++G +    + +  L
Sbjct: 111 ASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARD--DAPARDRFLGIMTGEAERMNRL 168

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LSR+E+         + L  +++  +  L   A E N+ +   +      +  D
Sbjct: 169 VGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDPLPLMGD 228

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGEIP 418
              + QV  NL+ N +K+  +G  V ++V  T       G    ++I+D+GPGI    +P
Sbjct: 229 TDQLLQVFTNLIENGIKYGGVGKDVEISVETTLRDPSLRGPAVRVTIRDHGPGIDPVHLP 288

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +       A  G GLGL I + I+  H G+  I S L +G     ILP
Sbjct: 289 RLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVILP 343


>gi|188588135|ref|YP_001921036.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498416|gb|ACD51552.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 515

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 4/235 (1%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK---EYIGDIHRSGQHLLNLI 305
           K+ F A++SHE +TPLN IL   +++  +    +  E  K   +YI  I ++   LL L+
Sbjct: 255 KTEFFATVSHEFKTPLNIILTTVQLLADKFKNDVLTEEVKINLKYINGIKQNSYRLLKLV 314

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N ++D+++I+ G Y+LS    +++ ++   +I +     EKN  I          +  D 
Sbjct: 315 NNLIDITQIDGGIYKLSLENCNIVSVIENIVISVSKYINEKNRNIIFDTTKEEIILAIDC 374

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             + ++ILNLLSNAVK+T  GG ++V +    +     + IKD+G GI E ++ ++   F
Sbjct: 375 DKIERIILNLLSNAVKYTNRGGNIYVNLSTDINNNRVIVKIKDDGIGIPEKDMDSIFRRF 434

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            Q         +G G+GL I +S++  HGG+  + +++++G E I  LP  +V +
Sbjct: 435 KQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKVNNEIKKGAEFIFFLPINKVKD 489


>gi|182625259|ref|ZP_02953034.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177909571|gb|EDT72011.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 791

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +  +      ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISKD-WVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|168214052|ref|ZP_02639677.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714403|gb|EDT26585.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 791

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +  +      ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISKD-WVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|153950420|ref|YP_001402786.1| sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961915|gb|ABS49376.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 939

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175
             G  W  L +     +  E L           + +  L++ +     +    P+   ++
Sbjct: 271 LKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFIN 330

Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235
                    ++  L       L          + + +  L+ Q +  ++  +        
Sbjct: 331 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEMKVKERTLALAK 386

Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
            +  + AE+ N  KS  L ++SHE+RTPLN  LG  E+++   +               H
Sbjct: 387 AK--RAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 440

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
           +    LL +IN +LD SRIE+G+  LS    +L+ ++ + ++ +  +A  K++ +   I 
Sbjct: 441 QCSLSLLAIINNLLDFSRIESGQMTLSLKKTALLPLLDQAMLTIHSQALSKSLALSTFIS 500

Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
             +   +  D   +RQ+++NLL NAVKFT   GR+ + V     +    +++D G GI  
Sbjct: 501 ADIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 558

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               T+   F Q        EQG GLGL IA ++    GG   + S+  +G      LP 
Sbjct: 559 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 614

Query: 475 TRVLNFIP 482
             +   IP
Sbjct: 615 NAITPPIP 622


>gi|110799765|ref|YP_694661.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168210597|ref|ZP_02636222.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|168217589|ref|ZP_02643214.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|110674412|gb|ABG83399.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170711346|gb|EDT23528.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182380362|gb|EDT77841.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 791

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +  +      ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISKD-WVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|18309189|ref|NP_561123.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18143864|dbj|BAB79913.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 791

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDI 294
           K A+     ++ F A++SHELRTPLN I    +++  +      +     + YK+ +   
Sbjct: 523 KEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLNSKHETDPMDFNNFYDKYKQGLKI- 581

Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354
             +   +L LIN ++D+S+IE G  +   +   ++ +V   + ++   ++ K+I I    
Sbjct: 582 --NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVENIVSLVIPHSENKDINIIFDT 639

Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414
           +   + +  D   + ++ILNLLSNA+KFT   G + V +  +      ISIKDNG GI +
Sbjct: 640 NVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISKD-WVKISIKDNGIGIPK 698

Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
               ++   F Q   ++K   +G G+GL I +SI   H G+  + S   +G E I  LP
Sbjct: 699 EMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIELISDGIKGSEFIVWLP 757


>gi|300903337|ref|ZP_07121265.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|301301546|ref|ZP_07207681.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|300404632|gb|EFJ88170.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|300843043|gb|EFK70803.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|315256223|gb|EFU36191.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 85-1]
          Length = 431

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 147/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ + +G    E     +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQPLGGAVREK---ALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLNIESTVGKGTRFSFVIP 422


>gi|218894079|ref|YP_002442948.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218774307|emb|CAW30124.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 998

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 13/385 (3%)

Query: 92  KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151
           +V    +        R  L   +IAI L      +            ++  + L      
Sbjct: 355 RVERFPLSYQPPGGERRQLGELEIAIDLA----AVYRRLVSGGLASLLWMGSFLCGLAVA 410

Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
            +     L              ++   +     LD           +    +        
Sbjct: 411 LSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKVDRERDEI-DAVAAALEDMRQALR 469

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
                  A++D+L  ++E   +     + +AE  + AKSRFLA+MSHE+RTPLN ILG +
Sbjct: 470 TDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMA 529

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++   ++G  +    ++ +  +  +G+ LL ++NE+L  +R+E           SL  +
Sbjct: 530 ELLREASLGERD----RQRLRALATAGEGLLAILNEVLHFARLEEAPDVPEAVDFSLRSL 585

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + + + +L+ RA+E    +   +DP +       E+ +RQV+ NLL NAVKFT  G    
Sbjct: 586 LEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRV 645

Query: 391 VTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          +S+ D+G GI E     +   F QG  A+     G GLGL I++ 
Sbjct: 646 RVERLVRSAGSERLRLSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGLAISKR 705

Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472
           ++   GG+  + S++ +G      +
Sbjct: 706 LVEALGGRIGVESRVGQGSTFWFEI 730


>gi|160938782|ref|ZP_02086134.1| hypothetical protein CLOBOL_03677 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438481|gb|EDP16240.1| hypothetical protein CLOBOL_03677 [Clostridium bolteae ATCC
           BAA-613]
          Length = 355

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 17/348 (4%)

Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192
                 I  +   LI L++  L  F L Y  +  F+   + +  Q    + +L +  A +
Sbjct: 10  LGTMTLILTAGIFLIMLTVMTLQGF-LMYLYWRIFYQADIPIP-QFWRPIPLLAVLSAVV 67

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAE-------KDDLIAELEVAKSLSDETRKRAEEE 245
            A      + I     +  ++ ++  A+         DL  E E      +   +  E  
Sbjct: 68  GAGLTLLLSRIPLKPIRDLIEAINQLADGNFKVRIHLDLNREFERLSESFNRMAQELENT 127

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
            L +S F+ + SHE +TP+ ++ GF+++++ + +     E   EY+  I      L  L 
Sbjct: 128 ELLRSDFINNFSHEFKTPIVSLRGFAKILKNDRL---TKEERDEYLDIIISESNRLSQLS 184

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
             +L+LS+IE         +  L + VR+ +++L+ + Q+K++E+F  +D        ++
Sbjct: 185 TNVLNLSKIEKMSILSDMESFDLSEEVRQSVLLLESKWQKKDLELFIDMDE--LEYRGNK 242

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
             + QV +NL+ NA+KF+   G++ + +     +     I DNG G+ E     +   F 
Sbjct: 243 ALLNQVWINLIDNAIKFSPQNGKIKLKLHRKKDQ-VVFQILDNGCGMDEETKNHIFDRFY 301

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           QG  +     +G G+GL + + I+  H GQ  + S+   G      LP
Sbjct: 302 QGDSSHT--AEGNGIGLTVVEKIVHLHKGQIRVVSEAGIGTTFTVNLP 347


>gi|190890210|ref|YP_001976752.1| phosphate regulon, two-component sensor histidine kinase [Rhizobium
           etli CIAT 652]
 gi|190695489|gb|ACE89574.1| phosphate regulon, two-component sensor histidine kinase protein
           [Rhizobium etli CIAT 652]
          Length = 369

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 2/229 (0%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             +  +S F+A+ SHELRTPL ++ GF E I+       + +   +++G +      +  
Sbjct: 143 RIDRMRSDFVANASHELRTPLASLRGFIETIQ--GPAKNDQKAQAQFLGIMFDQTTRMSR 200

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L++++L LSR+E   +   +  + L+ ++      L   A++  +EI   +      V  
Sbjct: 201 LVDDLLSLSRLELKSHIAPDEKVDLVPLLGHVRDSLVPLARDVGVEINLHLPDGKVEVLG 260

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + QV  NL+ NA K+   G  V V +   +     +SI D GPGI    +P +   
Sbjct: 261 DRDELVQVFENLMENACKYGQEGKVVDVRLKNGADGPVEVSIIDKGPGIPAEHVPRLTER 320

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F + SI    +++G GLGL I + I+  H  + +++S++ +G +     
Sbjct: 321 FYRVSIEDSRSKKGTGLGLAIVKHILTRHRARLIVKSEVGKGTDFTVRF 369


>gi|33591408|ref|NP_879052.1| phosphate regulon sensor protein [Bordetella pertussis Tohama I]
 gi|33571050|emb|CAE40538.1| phosphate regulon sensor protein [Bordetella pertussis Tohama I]
 gi|332380809|gb|AEE65656.1| phosphate regulon sensor protein [Bordetella pertussis CS]
          Length = 436

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 158/442 (35%), Gaps = 21/442 (4%)

Query: 50  PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM--------NSDIKIG 101
             +  F  ++A +  W   +P    W L   A  A  L    ++                
Sbjct: 7   LFMIAFWAVMALLAQWLIGDP--AGWLLFGAATAAMLLWRSWRLHLVSRWAHDPESAPPA 64

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
            V  W   L                 E         ++  +A  L    ++   +F + +
Sbjct: 65  AVGPWDDILAPLYRYTRA-----RARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDW 119

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
           A  ++   + + L        ++L++  A           +    L + ++     +   
Sbjct: 120 ANRMARRHLGLRLPADR--GHNLLNLLRAPEFVAYAHRGHWPEPILVRLSLNG-QERVMM 176

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L       + L      + E     +  F+A++SHELRTPL  + GF E +       
Sbjct: 177 IHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVLAGFLETLRELPAEA 236

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
           L  E   +Y+  +H   + +  ++ ++L LS +E+   E    A+ +  ++R     ++ 
Sbjct: 237 LPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLES-SPEADPLAVDVGALLRTARQQVE- 294

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A      +F+        V      +   + NLL+NAV++T  GGR+ V     +    
Sbjct: 295 -ALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGRIIVRWRRGADGEA 353

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
             S++D G GI    +P +   F +       A  G GLGL I + I   H    LI S+
Sbjct: 354 LYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKHIAMRHDADLLIDSE 413

Query: 462 LREGVEVIAILPNTRVLNFIPE 483
           L +G       P  RV    P+
Sbjct: 414 LGKGSTFTLRFPAERVTGEDPD 435


>gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 788

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 283 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 338

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 339 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 398

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI++ E 
Sbjct: 399 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGISQDEQ 457

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 458 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 517

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 518 VAEEVEDAFDED 529


>gi|296416932|ref|XP_002838123.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634029|emb|CAZ82314.1| unnamed protein product [Tuber melanosporum]
          Length = 1953

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%)

Query: 250  SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
            S FLA+MSHE+RTP NA+L  S  +    +    +E  +EY+  I  S    L +I+ IL
Sbjct: 1435 SSFLANMSHEIRTPFNALLSCSIFLLDTGL----SEQQREYVETIRNSAVLTLQIIDGIL 1490

Query: 310  DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGM 368
            D S+IE G  +L  S  SL D +   + ++   A  K++E+  +    ++ +V  D    
Sbjct: 1491 DFSKIEHGAIDLQVSPFSLRDCIESALQLVAEPAATKDLELAFRNKCSNVDTVHGDITRF 1550

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTS 423
            RQ ++NL+ NAVKFT   G + VT               ++++D G GI +     +  +
Sbjct: 1551 RQCVINLIGNAVKFTQE-GHILVTTEAKKLPNSELWSVEVAVQDTGIGIPDNARDRLFRA 1609

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            F Q   + +    G GLGL I++ +    GG     S+   G      +
Sbjct: 1610 FSQVDTSTRRTYGGTGLGLAISRKLAEMMGGDIWFESEKGVGSTFHLTI 1658


>gi|197104499|ref|YP_002129876.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477919|gb|ACG77447.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 833

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           KS FLA+MSHE+RTPL +ILGF+  ++   +     E    Y   +  + + LL ++N++
Sbjct: 457 KSDFLANMSHEIRTPLTSILGFASFLDELKL----PEPAGGYAAKVTTASRTLLAIVNDV 512

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           LD S++EAGR E+        +  R+ + +   +AQ K +E+  +   + +    D   +
Sbjct: 513 LDFSKLEAGRLEMKPRPTDPAECARDVLDLFGPQAQAKGLELVLE-PAAPAVAMIDADRL 571

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427
           RQV++NL+ NAVKFT   G V ++  +  + R     + D GPGI    +  +   F Q 
Sbjct: 572 RQVLMNLVGNAVKFT-QSGSVRLSCAYDPAERRLTCKVADTGPGIGAAAMEKLFQRFSQV 630

Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
             +   A  G GLGL I++ ++   GG+  + S    G     
Sbjct: 631 DGSTTRAHGGTGLGLAISKGLVEAMGGRIGVESAPGRGSTFWF 673


>gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 801

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 162/390 (41%), Gaps = 18/390 (4%)

Query: 89  LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           + + ++          +    L +   A+ +      +V              +  L   
Sbjct: 1   MNRSLLQELDPRNHAPLLARLLAIADDAVIVADAAQRIVLFNEGAERVFGYRLAEVLGQP 60

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           L++         +A  L  F      + +      +      G+L  A +  +++     
Sbjct: 61  LAMLLPEPARAAHAGHLRAFAQSALPARRMAERRDIHGRRADGVLFDAEASISHV----- 115

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
              +   +  A     ++E   A+   +  +  AE    AKS FLA+MSHE+RTPLNA++
Sbjct: 116 --ELDGQTYFAAILRDVSESRQARRALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVI 173

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G + ++    M    ++   ++   I  SG+ LL +IN+ILD S+ + G+ E+ +    L
Sbjct: 174 GMTTLLMDTPM----SDEQLDFARTIRASGETLLGVINDILDFSKADVGKLEIEQQRFDL 229

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387
              V + + ++  RA EK + +   I+      +  D   +RQ++ NLLSNAVKFT  G 
Sbjct: 230 RRCVEDALDLVAPRALEKRLNLAYLIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGE 289

Query: 388 R-VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
             V +               + +++D+G GIA   +P +  SF Q   +      G GLG
Sbjct: 290 VLVIIDSEPVDAGDGPLHRIHFAVQDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLG 349

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           L I++ +    GG   ++S+  +G      
Sbjct: 350 LAISKRLAELMGGTVSVQSEPGQGSVFRVS 379


>gi|318605169|emb|CBY26667.1| putative Histidine protein kinase sensor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1185

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 10/269 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+   E       
Sbjct: 626 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL---EIRSEQPV 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K  +  + +S Q L+ L+++I+D ++IEAG+  +  + +     +     + Q  A 
Sbjct: 683 D--KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQPIAD 740

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           E+N+     +D  +   V  D   +RQV+ NLL NA+KFT  G   V +T      +   
Sbjct: 741 ERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDDKHGV 800

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + S
Sbjct: 801 TNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEITLES 860

Query: 461 KLREGVEVIAILPNTRV-LNFIPEDNHES 488
           +L +G  +   LP      + +P+++  +
Sbjct: 861 QLGKGTSLFITLPLEVASADDLPQESATA 889


>gi|260842598|ref|YP_003220376.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
 gi|257757745|dbj|BAI29242.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
          Length = 431

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L   L               +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCFPAFILGAFLGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA    L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLNIESTVGKGTRFSFVIP 422


>gi|308172234|ref|YP_003918939.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307605098|emb|CBI41469.1| two-component sensor histidine kinase [YclJ] [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552044|gb|AEB22536.1| two-component sensor histidine kinase (YclJ) [Bacillus
           amyloliquefaciens TA208]
 gi|328910308|gb|AEB61904.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 474

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 123/256 (48%), Gaps = 7/256 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L ++         ++R++ +     + +F+A +SHELRTPL  I G  E +   T+
Sbjct: 220 EIGMLASDFNTMAHNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTI 279

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
              + E        I    + +L L+ E LD  +I + + +L + ++ LI++       L
Sbjct: 280 PEKDKEK---CFSLISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHL 336

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
             +A+EK   +  +++  +  V+AD   + Q+++N+  N+++FT   G + +  G+   +
Sbjct: 337 NQQAEEKQNRLRIQVEAGV-KVFADYDRLIQILVNITKNSIQFT-QNGDITLR-GYEGYK 393

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              I I+D G GI++ EI  +   F +  ++   +A    GLGL I + ++  H G   I
Sbjct: 394 ETIIEIEDTGIGISKEEIEHIWERFYKADVSRTNTAYGEYGLGLSIVKQLVELHKGTIDI 453

Query: 459 RSKLREGVEVIAILPN 474
            S+  +G      LP 
Sbjct: 454 NSEKGQGTTFTIRLPL 469


>gi|293372871|ref|ZP_06619245.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632160|gb|EFF50764.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 250

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I +++  +   +  R  AE+  L K  FLA+MSHE+RTPLN+I+GF+ ++ LE    L++
Sbjct: 5   IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 61

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              +EYIG I+++ + LL LIN+IL+LSRIE+G    S     + +++ +  +  Q+   
Sbjct: 62  VEREEYIGAINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIA 121

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGRGQYI 403
              +E  +++D     +  D + + QV+ N L+NA KFT   G + +  +         I
Sbjct: 122 -PRLEFLKEVDNIPLEINVDRERLIQVLTNFLNNASKFTET-GYIKLGYIYLPDEGHVRI 179

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            ++D G GI   E   + + F +         QG GLGL I Q I+   GG+  ++S++ 
Sbjct: 180 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGRIELKSEVG 235

Query: 464 EGVEVIAILPNTRV 477
           +G     ILP   V
Sbjct: 236 KGSRFTVILPCRVV 249


>gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1330

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            K  FLA +SHELRTPLN ILG+S++++      ++ +  ++ +  I R+ +  + LI+++
Sbjct: 962  KDEFLAVLSHELRTPLNPILGWSKLLQS---PQISAQKLQQGLATIERNAKQQVQLIDDL 1018

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            LD SRI  G+  L+ + I+L + +   +  ++L A+ K I++  K+   L  +  D   +
Sbjct: 1019 LDTSRIIRGQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRL 1078

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            +QV+ NLLSNA+KFT  GGR+ V +     R   I ++D G GI    +P V   F Q  
Sbjct: 1079 QQVVWNLLSNAIKFTPPGGRITVRLSQV-DRWAQIQVRDTGKGIQPQFLPHVFELFRQED 1137

Query: 429  IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474
             +   +  G+GLGL IA+ ++  HGG  +  S+   +G     +LP 
Sbjct: 1138 SSTTRSFGGLGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLPL 1184


>gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 778

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|115374744|ref|ZP_01462020.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368221|gb|EAU67180.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 641

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 139/381 (36%), Gaps = 9/381 (2%)

Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168
                 +A  L  T    +        ++ I  +          A     LP  +     
Sbjct: 261 RATQLALASTLLRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGL 320

Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF--KSNVKILSCQAEKDDLIA 226
            +   L         +  + L+         + Y T  ++  ++    +       +   
Sbjct: 321 HLEQFLRHVLETGQPLERLELSAQELGLAGPWLYWTLSIYPVRAVDGRILGIGSVVENTT 380

Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             ++A+       + A+E    +  FL   SHEL+TPL  +      +E +       + 
Sbjct: 381 GTKLAEQERSRLLREAQEAVRVRDDFLTIASHELKTPLTPLSLRLATLERKLERGEPVDP 440

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
               +    +    L  LIN++LD SRIE+G   L      L  ++   I + +     +
Sbjct: 441 AS--LHHARQHLTRLTTLINDLLDTSRIESGGLALHPQPTRLDVLIEHVIHVTETLHDAR 498

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           +  I   +      V  D   + QVI NLL NA+K++  GG + V++    G    +++ 
Sbjct: 499 D-RITFHLPVRPIEVLGDPYRLEQVISNLLENALKYSPDGGTIRVSLEAR-GDVVLMTVS 556

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI   +   +   + +       A  G+GLGL I + I+A HGG   + S++  G 
Sbjct: 557 DPGIGIPSDQQQHLFERYFRARNVSTHAYGGLGLGLYICRDIVARHGGSIWVESEVGRGS 616

Query: 467 EVIAILP---NTRVLNFIPED 484
                LP    +R L  +  +
Sbjct: 617 TFYVALPTLQASRALTALTPE 637


>gi|148654963|ref|YP_001275168.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148567073|gb|ABQ89218.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 358

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 142/346 (41%), Gaps = 7/346 (2%)

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194
            ++ +     L + ++   L+   +  A+   F   V+     A ++  +  ++ + +L 
Sbjct: 19  AHMLVVIVGVLTLIVTAETLAARSVDPALLPVFQSAVIQALVVAALAATIAGLATSILLV 78

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             +           +        +     L  EL       ++  +   +    +   + 
Sbjct: 79  REILRPLRQLAASSRRIAGGNYDERVTAPLTDELREVAQSFNQMAETLAQVERQRITLIG 138

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +++HELRTPL  + G+ E +    +         E I  +    + L  L++++  LSR+
Sbjct: 139 NVAHELRTPLAGLEGYLEGLLDGVLPGDP-----ETIHAMQHEVRRLRKLVDDLQHLSRV 193

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374
           EAG+  +      ++ +V   +  L+ +  E+ ++I  +     +  +AD     QV++N
Sbjct: 194 EAGQVAIQPQRFDVVALVHRIVAHLRPQLIEQCLQIAIEAPEKEALAYADPDRTAQVLIN 253

Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           L+ NA+++T   G + + V       Q I ++D G GI    +P +   F +   +   A
Sbjct: 254 LIGNAIRYTPEDGCITIRVRCDPTHVQVI-VEDTGIGIPAEALPYLFERFYRVDPSRSRA 312

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479
             G G+GL IA+ +    GG+    S  + +G     ILP   + +
Sbjct: 313 SGGSGIGLTIARHLARAMGGEITAASPGIGKGSVFTLILPRGEIAS 358


>gi|91784527|ref|YP_559733.1| phosphate sensor signal transduction histidine kinase, PhoR
           [Burkholderia xenovorans LB400]
 gi|91688481|gb|ABE31681.1| phosphate sensor signal transduction histidine kinase, PhoR
           [Burkholderia xenovorans LB400]
          Length = 437

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 6/256 (2%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K +  +     E  +  +  F+A++SHEL+TPL  + GF E +      PL+     
Sbjct: 187 ENRKLVLSQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL---PLSEGERS 243

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            Y+  + +    + ++++++L L+++E      S+  I +  ++R      Q  + + + 
Sbjct: 244 RYLELMEQQASRMRHIVSDLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAQSLSSDHH- 302

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +I    D  L +V   E  +     NL++NA+++T  GG + V+     G     S+ D+
Sbjct: 303 KIVFDADEGL-TVTGVETEILSAFGNLVTNAIRYTPDGGAIRVS-WHAQGGHAVFSVTDS 360

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI   +IP +   F +   +      G GLGL I + ++  H  Q  ++S+   G   
Sbjct: 361 GLGIPAADIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTF 420

Query: 469 IAILPNTRVLNFIPED 484
               P  R     P  
Sbjct: 421 TVRFPVYRTARRQPAP 436


>gi|70731594|ref|YP_261335.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345893|gb|AAY93499.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 773

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 6/273 (2%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
            +T +L +    + +   E     A L  +    +  R+ A +   A++ FLA+MSHE+R
Sbjct: 245 RLTEYLGQLENIVSARTTELKASNARLSQSNEELEIARRTALDMAQARAAFLANMSHEIR 304

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPLN +LG   +     +    N   ++ +   H SG+ L+ L+N+ILD+S+ +AG+ EL
Sbjct: 305 TPLNGLLGMIALSLDSPL----NPEQRQQLSIAHDSGKVLVELLNDILDMSKFDAGQLEL 360

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
                 L  +V +   +L   A               + V  D   +RQ++ NLLSNA+K
Sbjct: 361 ERIPFDLGVLVEDTANLLSQNAAASVELACLIAPDFPALVLGDPTRVRQIVSNLLSNALK 420

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           FT   GRV V +  T G G  I I D G GIA+     +   + Q    I     G GLG
Sbjct: 421 FT-RFGRVDVRLS-TLGDGVRIEICDTGIGIAQEAQVRIFQPYTQAGAGITRQYGGTGLG 478

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L +  ++     G+  I S++  G +  A LP 
Sbjct: 479 LALTYNLCEAMDGRLSISSEVGFGSQFCADLPL 511


>gi|85711169|ref|ZP_01042229.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina baltica OS145]
 gi|85695082|gb|EAQ33020.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina baltica OS145]
          Length = 435

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 164/439 (37%), Gaps = 25/439 (5%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL---------GKKVMNS 96
              S    L  L++  +        +   W  ++L++    +                 +
Sbjct: 3   REYSSFGALKGLVLYLVPFAIIGAILGIFWQAMSLSMAGLLIWHYYYQQKLTDWLWNSRN 62

Query: 97  DIKIGEVYVWRIWL-LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
            +       W      + +          +L +      E       A ++     S L 
Sbjct: 63  LMPPTAPGSWSYIYDGIYRNQRRSQQRRRSLAQLLRRFREAAEALPDAAIVFRRDGSLLW 122

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           +  L    F   +P    +    ++        L+                     ++++
Sbjct: 123 SNQLAQFYFGLKWPDDAGMRLSNLIRHPEFFSYLSKGNFEEALTIPSPARDSLDIEIRVM 182

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
               ++  L+A         D  RK           F+A++SHEL+TPL  + G+ E++E
Sbjct: 183 PYSDDQYLLVARDVTQIKQLDNLRK----------DFVANVSHELKTPLTVLQGYLEMVE 232

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              M P       + +G++ R  + +  LI+++L+LSR+E   +++ E  +    ++++ 
Sbjct: 233 DPAMTP--PAMMTKAVGEMQRQSERMRLLIDQLLELSRMETPSHDVFERVVDAPSLLQQL 290

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
               +  A+ K+I +   + P    V+  E  +R  + NL++NA+++   GG + VT   
Sbjct: 291 QTEAEKLAKTKSINVHFDVAP--VKVYGKEDALRSAMQNLITNAIRYNQEGGDIRVTWQM 348

Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
             G     S++D GPGIA   +P +   F +      S   G GLGL I +  + +H  +
Sbjct: 349 V-GSEVEFSVEDTGPGIASEHLPRLTERFYRVDKDRNSERGGTGLGLSIVKQALQHHNCE 407

Query: 456 FLIRSKLREGVEVIAILPN 474
             + S L +G      LP 
Sbjct: 408 LQVNSALGKGSRFWFRLPA 426


>gi|295704203|ref|YP_003597278.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801862|gb|ADF38928.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 459

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 12/324 (3%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           AL     P   F     V        ++   VL   ++ ++   +   +     + +   
Sbjct: 139 ALFIQSHPQRQFSVIQDVQNIQLITILLVGIVLFAYVSMIIIKPIKRLSTAMKVVGQGEY 198

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
            +    A  D++    +    ++ E  K        +  F+AS+SHE+++PL +I GFS 
Sbjct: 199 NVQVEHAANDEIGLLTKNFNQMTKELNK----IETMRQEFIASVSHEIQSPLTSIRGFSA 254

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            ++ + +   + +   +Y+  I +    L  L + +L L+ +++    L      L + +
Sbjct: 255 ALKDDIV---SEDKKIQYLTIIEKESTRLSQLSSNLLKLASLDSEHQTLMLQQYRLDEQI 311

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           R  ++ L+ +  +KNIEI   +      + AD+  + QV LNL++NA+K+T   G V ++
Sbjct: 312 RHVVMALEPQWTKKNIEIDLDLSN--VQIEADKDLLEQVWLNLVTNAIKYTPENGFVKIS 369

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           +   +     + IKDNG GIAE +   +  SF +   +     +G GLGL I + I+  H
Sbjct: 370 IHQKNE-EIDVKIKDNGIGIAEEDQKYIFESFYKVDKSRT--LKGSGLGLAITKKIVRLH 426

Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476
            G   + SK  +G      LP  +
Sbjct: 427 EGAVRVESKKEQGSIFSVTLPIQK 450


>gi|283851324|ref|ZP_06368606.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573274|gb|EFC21252.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 858

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 25/306 (8%)

Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254
             L             + + L   A   D+ A     ++     R++AE  + AK++FLA
Sbjct: 419 GGLLLLADAKAPYSDRDARTLQRMAVLFDMGAARLRVETELVAARRQAEAASEAKTQFLA 478

Query: 255 SMSHELRTPLNAILGFSEV-IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           ++SHELRTP+N ILG +++ I    +G        EY   +  +   L+ +++ +L+L+ 
Sbjct: 479 NVSHELRTPINGILGMAQLAILEGAVGRDA-----EYWQTVRDATDRLVAIVDNLLELAS 533

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372
           +E+G         SL  ++        +RA    + +   I P L   +  D   +RQ++
Sbjct: 534 VESGSLSPLLREFSLRRLLESLRGAFSVRAGLAGLTLGLDITPGLPDRLLGDPFRLRQIL 593

Query: 373 LNLLSNAVKFTAIGGRVHVTVG----WTSGR-------------GQYISIKDNGPGIAEG 415
            NLL NA++FT  GG V + +      T+G                  ++ D G GI + 
Sbjct: 594 GNLLDNAIRFTPSGG-VSMQIRPFDPRTAGGPQRVFVAGDFNGISLVFTVTDTGIGIPKD 652

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   +  SF  G   +     G G+GL IA+ +    GG   + S+   G      +P  
Sbjct: 653 KQAAIFESFTLGEDHLTKRFGGTGMGLSIARRLAELLGGSIWVESRPGFGSTFHLTVPMW 712

Query: 476 RVLNFI 481
            V +  
Sbjct: 713 PVSDEA 718


>gi|124026473|ref|YP_001015588.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961541|gb|ABM76324.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
          Length = 689

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 25/254 (9%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
           + N A+ RF++++SHELRTPL  I  + E +       L  +  KE++G  +     L  
Sbjct: 413 QLNAAQKRFISNVSHELRTPLFNIKSYVETLYD-LGEQLTKDEQKEFLGVANSETDRLTR 471

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+N++LDLS++E+GR  +   A+S+ + + + +   +L A+EKN+++   ++ +L+ V  
Sbjct: 472 LVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAEEKNVKLILTVENNLTFVLG 530

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------------RGQ 401
           +   + QV  NL+ NA+KF+  GG +++                                
Sbjct: 531 NWDMLLQVFDNLVGNALKFSQEGGIINLKAYTWPDICVASPVDLDNKAPHCEILSPMPKI 590

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
            + + D G GI+E +   +   F +   ++ +   G GLGL I + I+  HG +  + S+
Sbjct: 591 RVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEV-GTGLGLSIVKGIVDKHGSEIRMASE 649

Query: 462 LREGVEVIAILPNT 475
              G      LP  
Sbjct: 650 PNTGTTFWFELPLE 663


>gi|28975401|gb|AAO61795.1| sensor kinase VbsS [Vibrio parahaemolyticus]
          Length = 1221

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + +K A+    A+  FLA+MSHELRTPL+A  G  +++  +       
Sbjct: 644 ITQQKEREQALIDAQKEAQTAVRARENFLATMSHELRTPLSAAHGILDLLNRQV----TA 699

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++ +E I    RS  HL  L++E+LD S++EAG+  ++ +   L+  + +     + RA 
Sbjct: 700 DSNRELIAQAMRSLNHLNVLVDEVLDYSKLEAGQLTVAPAKTDLLKTLCDVFRSFEPRAL 759

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++    I P S + +  D   + Q+  NLLSNAVKFTA  G + ++V     +   +
Sbjct: 760 AKGLDYKVTIKPFSDAFIEIDALRLVQITTNLLSNAVKFTAE-GEIGISV-ILHEKQLIL 817

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ +G++  +L  F Q   +I     G GLGL I   ++   GG   I S+  
Sbjct: 818 KVADTGIGMTDGQLEGILNPFVQADDSITRKYGGTGLGLSIVDRLIDCMGGVLCIDSQFG 877

Query: 464 EGVEVIAILPNTRVLNFIPE 483
            G  +   LP  R  +  PE
Sbjct: 878 LGTTITVKLPIER-CDSEPE 896


>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 766

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 135/326 (41%), Gaps = 7/326 (2%)

Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209
           ++  L          L+     +      +  + V         + +         +   
Sbjct: 297 ALDTLVAQRWLRRYPLTVSFETLREPIGPLEVLCVRRDGRRFRASVSACPVRGDARNCVA 356

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
            ++ +   + ++   +      +      R+RA+  N  K   LA++SHELRTPLN I G
Sbjct: 357 LSLTLRETRVQRRRDLRTQRSLQGART-ARERADTSNRLKDELLATVSHELRTPLNVIYG 415

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
           + EV+        ++   ++ I  I RS   L  ++ +ILD S +  G+  L    + ++
Sbjct: 416 WVEVLRS----ASDDALQQQAIDAIDRSAHSLTRMVGDILDASSLATGKLRLDAMPVDVV 471

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
            +  +     Q  A    I +      S   V  D + +RQ++ NL+SNA+KFT  GG V
Sbjct: 472 RLFADATSAFQTAASAAGIALEFDCTASACVVSGDAERLRQMLSNLVSNALKFTPAGGAV 531

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            VT+   +     +++ D G GIA   IP V   F +   +  S  +G+GLGL I + I 
Sbjct: 532 TVTLTHDAAH-AVLAVGDTGQGIASEFIPYVFDMFRRADGSPASPRRGLGLGLSIVRHIA 590

Query: 450 ANHGGQFLIRSK-LREGVEVIAILPN 474
             HGG+  + S     G      LP 
Sbjct: 591 ELHGGEVRVDSAGRNRGATFTVTLPA 616


>gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L]
 gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L]
          Length = 1754

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 127/266 (47%), Gaps = 7/266 (2%)

Query: 219  AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
             +    +   E  +    ++ +R +E    KSRF++  SHE RTPL  I+G +E+ +   
Sbjct: 1482 YQTLHEVQVRERLEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIMGVTEIFK-YY 1540

Query: 279  MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
                 +E  + Y+  I  + +H+L++++++L +++  AG+ + + + ++L++  R+ +  
Sbjct: 1541 SQNWTDEKKQNYLDRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLLEFCRDLVED 1600

Query: 339  LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            ++L   +    I   I      V  DEK +R +++NLLSNA K++     ++  +     
Sbjct: 1601 IELGI-DTQQSIVFSIQCECPEVNFDEKLLRHILINLLSNATKYSPNDSTINFDLICQQE 1659

Query: 399  RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                  IKD G GI E +   +  SF + +        G GLGL I +  +  HGG+  +
Sbjct: 1660 -EVIFKIKDQGIGIPEEDQKQLFESFHRCNNVGN--IPGTGLGLAIVKQSVEVHGGEITV 1716

Query: 459  RSKLREGVEVIAILPNTRVLNFIPED 484
             S++  G      +P       +PE 
Sbjct: 1717 NSQVGIGTTFTVTIPLY--SPAVPEQ 1740


>gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1392

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 27/313 (8%)

Query: 189  LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
                +   L +   I   L     + +     K     +L+ A     E R    E +  
Sbjct: 818  FWMTIYAYLFYMLVIVAALLFIRRQGVKKLRNKLRDEQDLKEA-----EARH---ELDRM 869

Query: 249  KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
            K +FL ++SHE RTP++ I+   + +  +  G    +   E +G I ++ + LLNL+N++
Sbjct: 870  KIKFLTNLSHEFRTPISLIMAPVDKLIAQQHG----QPVAEQLGVIKKNARRLLNLVNQL 925

Query: 309  LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
            LD  ++E    +L+ +   LI  VRE        A+ K I+   K       V  D   +
Sbjct: 926  LDFRKLEENELKLNVAEGELISFVREMTDSFHDLAEGKQIKTSFKTAEEKMFVKFDFDKV 985

Query: 369  RQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             +++ NLLSNA KFT  GG + V +         +     + ++D G GIA  ++  +  
Sbjct: 986  ERIMFNLLSNAFKFTLPGGEIAVEILNPVLDPQQNSYVVTLMVRDTGMGIAAAQLNHIFE 1045

Query: 423  SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNT 475
             F Q         QG G+GL I + ++  HGG     S   EG             LP  
Sbjct: 1046 RFYQVDTPSGVLNQGSGIGLSITRELVQLHGGDITAESTPGEGSVFTFTINVEAIALPVE 1105

Query: 476  --RVLNFIPEDNH 486
               VL   PE+  
Sbjct: 1106 IAPVLIAGPEEED 1118


>gi|302188257|ref|ZP_07264930.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 745

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 160/362 (44%), Gaps = 13/362 (3%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W ++   EP   +    ++Y  A     ++   L    LP  V          +     
Sbjct: 390 AW-MIAGGEPVYASHHLSSVYPPAEAYQPIASGVL-AMSLPKPVDNGVIWFRPEVKETVQ 447

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--DE 237
            S +          A  +      ++ ++K  +  ++ +    D+ A  ++ +S    D 
Sbjct: 448 WSGNPKKPLDMESSAGVMRLRPRTSFEIWKVEMTGIATKWSHGDVFAANDLRRSALENDL 507

Query: 238 TR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE--TMGPLNNETYKEYIGD 293
            R  +R ++   A+   +A +SH+LR P+  I     +++    + GP  +      I  
Sbjct: 508 ARQVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTAIDT 567

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + ++   +  L+ ++LD S+IEAGRY ++   + +  I  E   +L   A +K+IEI   
Sbjct: 568 MQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFN 627

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +P L  V AD + + QV+ NL+ NA+KFT   G + V    ++G     +++D+G GI 
Sbjct: 628 AEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGV-AAMSNGTEIVFTVRDSGEGIP 685

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++P +   +        +   G GLGL I+Q I+  HGG+   +S++ EG E    +P
Sbjct: 686 PEQLPHIFERYWTVKEGNPT---GTGLGLYISQGIIKAHGGELAAQSRVGEGSEFRFTVP 742

Query: 474 NT 475
             
Sbjct: 743 MA 744


>gi|17987907|ref|NP_540541.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
           str. 16M]
 gi|17983642|gb|AAL52805.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
           str. 16M]
          Length = 412

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 146/380 (38%), Gaps = 19/380 (5%)

Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161
                R   L                E    + E L    +  +++    + +    +  
Sbjct: 32  WARSGRRRALAMGRMKRFPCGKWPAREMAAVSGERLADLLTDPMIVFDHTATVRFANV-- 89

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS-----FFTYITYHLFKSNVKILS 216
           A   +F  +    +         +   + G++A         F        +K+ VK L 
Sbjct: 90  AALEAFQSLQNGTALYLRFRAPEMLALIQGVIADGEPRNIEYFERVPIDRWYKAMVKALR 149

Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276
               K +L   +   +S +          +  +S F+A+ SHELRTPL ++ GF E ++ 
Sbjct: 150 DAEGKPELFVLIFRDQSETR-------RIDRMRSDFIANASHELRTPLASLRGFIETLQ- 201

Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336
                 +      ++  + +  + +  LI+++L LSR+E   +     ++ +   +    
Sbjct: 202 -GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAATLAHVA 260

Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396
             L   A    + I + +      V      + QV  NL+ NA K+   G RV + +   
Sbjct: 261 DTLTPLAAGLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVIIRLSEE 320

Query: 397 SGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     SI+D GPGIA   +P +   F +  +    A +G GLGL I + I+A H 
Sbjct: 321 DTGNATEVVASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHILARHR 380

Query: 454 GQFLIRSKLREGVEVIAILP 473
           G+ ++RS+L EG   +  LP
Sbjct: 381 GRLVVRSQLGEGSTFMVRLP 400


>gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum
            JL354]
          Length = 1446

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 255  SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
            +MSHE+RTP+N ++GF+E++    + P      +E    I  SG+ ++ ++N+ILD+S+I
Sbjct: 945  NMSHEIRTPMNGVVGFTELLLAGELSP----EQRENAQLIADSGRAMMQILNDILDVSKI 1000

Query: 315  EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
            +AG+  +    I L   ++ C+ +L+  A++K ++    ID  +   V AD   +RQ++ 
Sbjct: 1001 DAGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSRVMADPLRLRQILT 1060

Query: 374  NLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430
            NL+ NA+KFTA G    RV +  G        I+++D+G GI    +  +   F Q   +
Sbjct: 1061 NLVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRLDAIFREFSQADES 1120

Query: 431  IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
                  G GLGL I+  +     G+ L+ S+L  G      LP  R 
Sbjct: 1121 TARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLPLLRA 1167


>gi|295100812|emb|CBK98357.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 449

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 29/323 (8%)

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
           ++ +  LP  V   F  +  A     +++  ++   L             + +       
Sbjct: 149 SIYDAALPAIVLSCFLMMGAAAIIAGLLTKSLVQPVL--------KMTDDLDHIQENVPY 200

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           K L   AE       L                    +  F A++SHEL+TPL +I G++E
Sbjct: 201 KELIPFAENIHSDRMLRENNE-------------KMRQEFTANVSHELKTPLTSISGYAE 247

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE---LSESAISLI 329
           +IE     P +     ++   IH     ++ L+N+IL LS ++         +   + L+
Sbjct: 248 LIETGIAKPADTP---DFARKIHVEASRMIQLVNDILQLSHLDNVSETGAAPAMETVDLL 304

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           D+ REC+   ++ A+   I +    + +   V      + ++  NL  NA+++   GG+V
Sbjct: 305 DVARECVERQKVNARHSYISLTYLGESAP--VTGSRSLLDELCQNLCDNAIRYNRPGGKV 362

Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
            +    T      +++KDNG GI +    +V   F +   +   A  G GLGL I + I 
Sbjct: 363 QIITACTRDGHCTLTVKDNGIGIPKEAQTSVFERFYRVDKSRSKATGGTGLGLAIVKHIA 422

Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472
             H  +  + S + EG  +  I 
Sbjct: 423 RIHNARIKLDSVVDEGTTITVIF 445


>gi|218291333|ref|ZP_03495293.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238779|gb|EED05993.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 7/236 (2%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F+A  SHELRTPL  I     ++   T      E   E++ + H   + L  
Sbjct: 181 RAFQRQLEFVADASHELRTPLAVIQSNLGIVMEHT--DQTVEENLEWLNNAHGEARRLAK 238

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L+ ++L L+R ++ R  +    ++L +++     + +  A+ + IE+  + +  L  V  
Sbjct: 239 LVQDLLTLARSDSERMPVERRPVALNELLDRIHDLYETIAEMRGIELSVRAEEPLV-VLG 297

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D   + Q+++ L+ NA+KFT  GG+V +       +   +S++D G GIA+  +  V   
Sbjct: 298 DRDRLHQLLVILIDNAIKFTDAGGKVEIAATRNRNQ-AILSVRDTGIGIAKEHLERVFDR 356

Query: 424 FGQGSIAIKSAEQ--GVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTR 476
           F     A     +  G GLGL IA+ I+  HGG+  I S+ + +G  V   LP + 
Sbjct: 357 FYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIASEGIGKGTTVRVELPLSP 412


>gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 817

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 180/458 (39%), Gaps = 31/458 (6%)

Query: 31  MDFDREIITLHVES----LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86
                  + L+ ++       V+  L    L  A +              ++ LA+   N
Sbjct: 134 RALANSSLELYAQTADEQRAEVAGTLTQLALATAALIG------------VLALAIIYLN 181

Query: 87  LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146
           L   +       K   +   +  +      + +C     ++E            K+A L 
Sbjct: 182 LLNARVYHREREKNQTMSRMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVLD 241

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           + ++ S +    L +A       + +      +  +    + L         F   +   
Sbjct: 242 LNIA-SVIVPDHLLHANEAGMERMRIG---GDMRVIGKGRVRLEAKHKDGHIFPVELAIQ 297

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
             K++   +     +D  I+   +A++     R +A      K+ FL++MSHE+RTPLN 
Sbjct: 298 NAKTDEGTIFISFLRD--ISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNG 355

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           +LG   ++    +    NE    Y+G +  SG+ LL+ ++++LD++R +AG+       +
Sbjct: 356 LLGNMNLLRDTEL----NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPV 411

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           ++ +++++ +      A +    +        +  V +D   ++ V++NL+ NAVKFT  
Sbjct: 412 NISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRR 471

Query: 386 GGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442
            G+V VT+            + I D G G++E  I  V   F  G+ A      G GLGL
Sbjct: 472 -GKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 530

Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            IA+  +   GG+  + S + EG      LP       
Sbjct: 531 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHEAEAP 568


>gi|169338051|ref|ZP_02621670.2| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169295065|gb|EDS77198.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 382

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 9/281 (3%)

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251
           ++   L         + K  V         D++        S++    K  EE +  +  
Sbjct: 109 IIIKPLGEINSAADKISKGEVNKRVNIESNDEIGELATSFNSMA----KSLEEVDENRRS 164

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELR+P+ +I GF   I     G +  E  K Y+   +   Q L  LIN++LDL
Sbjct: 165 FISNVSHELRSPITSIKGFIGGILD---GIIPKEKEKYYLSIAYEEIQRLTRLINDLLDL 221

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S IEAG++ ++     + +I+R  II  +   + K + +   ++        D   + QV
Sbjct: 222 SAIEAGKFVINMKKEDINEIIRLSIIKFETVIKSKKLNVEVWLEEESVYALVDRDKIIQV 281

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           I NL+ NA+K+    G + V      G+  YIS+ ++GP I+  +   +   F +G  + 
Sbjct: 282 ITNLIDNAIKYGKEEGNIEVRTK-VKGQYIYISVYNDGPNISGEDAKYIWDRFYKGDKSR 340

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                  GLGL I + I+  HGG     +K  +GV+ I  L
Sbjct: 341 TLKVS-TGLGLSIVRRIVTQHGGDIWFENKENKGVKFIFTL 380


>gi|228914577|ref|ZP_04078186.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844896|gb|EEM89938.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 293

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299
                    +  F++++SHE+++PL +I GF+  ++   +     E  K Y+  I     
Sbjct: 61  DELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNL---PEEKRKHYLTIIETETT 117

Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359
            L  L   +L L+ +E+  Y        L   +++ ++  +    EK IE+   ++    
Sbjct: 118 RLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEK--V 175

Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419
            + AD++ M QV +NL+ N++KFT   G + + +         + I+D G GI+E +   
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYE-TLVEVRIRDTGSGISEEQKQH 234

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +   F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +P
Sbjct: 235 IFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|7547007|gb|AAF63755.1|AF243474_1 putative ethylene receptor [Vitis vinifera]
          Length = 741

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 46/344 (13%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             +V+ L + +    HV ++ L  ++A  ++           S+  IL       DL+ E
Sbjct: 274 ALMVLMLPSDSARQWHVHELELVEVVADQVAVAL--------SHAAILEESMRARDLLME 325

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                   D  R+ AE    A++ FLA M+HE+RTP++AI+  S +++   + P      
Sbjct: 326 ---QNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTP----EQ 378

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +  I +S   L  LIN++LDLSR+E G  +L     +L  + RE + +++  A  K 
Sbjct: 379 RLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIKPIASVKK 438

Query: 348 IEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399
           + +   + P L      DEK + Q++LN++ NAVKF+   G + +               
Sbjct: 439 LFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNE-GNISIFAFIAKSESLRDSRA 497

Query: 400 ------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          + +KD+G GI   +I  + T F Q          G GLGL I + 
Sbjct: 498 PDFFPVHSDNHFYLRVQVKDSGAGIDPQDISKLFTKFAQCQSLAARNSGGSGLGLAICKR 557

Query: 448 IMANHGGQFLIRSK-LREGVE--VIAILPNTRVLNFIPEDNHES 488
            +   GG   I S+ L +G     I  L        IPE ++ES
Sbjct: 558 FVNLMGGHIWIESEGLGKGSTAVFIVKL-------GIPEYSNES 594


>gi|291535461|emb|CBL08573.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 478

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 131/328 (39%), Gaps = 16/328 (4%)

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
           +S     +  L    + +F  + +A      +   ++ I +  +                
Sbjct: 161 VSSIVNLSNQLTNLSYQTFALLFLAAFVVLALFTWIVYIPIRKIAQG--------ANEYA 212

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268
             N +        D++         +++E     E  +  K  F++++SH+ R+PL +I 
Sbjct: 213 SGNFEAKIDVHSNDEIGYLAASLNYMANELNTLEE--DQRK--FVSNVSHDFRSPLTSIK 268

Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328
           G+ E +     G +  E   +Y+  I    + L  L   +L+L++  +    L  ++  +
Sbjct: 269 GYVEAMLD---GTIPVEMQDKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDITSFDI 325

Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388
              +R  +   +    EK+I     +      V AD   ++QV+ NL+ NA+KF+     
Sbjct: 326 NHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYNLIDNALKFSHANSA 385

Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448
           + +          ++S+KD G GI +  I  +   F +  ++    ++G GLGL I + I
Sbjct: 386 ITIETT-EKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDKKGTGLGLSIVKEI 444

Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476
           +  HG      S    G E I  LP  +
Sbjct: 445 IQAHGENINCISTEGVGTEFIFTLPLAK 472


>gi|148974903|ref|ZP_01811883.1| sensory box histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145965412|gb|EDK30661.1| sensory box histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 706

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 143/261 (54%), Gaps = 10/261 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I+E++       E ++RA   + AKS FLA+MSHE+RTP+NAI+G S +     +G ++N
Sbjct: 102 ISEMKRLNEQLAEEKERANLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 157

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
            T + YI  +HRSG  LL+ IN+ILDLS+IEAG+  +     + +   ++ I +++ +A 
Sbjct: 158 PTARTYIEKVHRSGHSLLSSINDILDLSKIEAGQLFIDNIPFNALATFKDVIDLMESKAD 217

Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           EK + +   IDP L + +  D   + QVILNL+ NA+KFT   G V +TV       + +
Sbjct: 218 EKQLNLSMSIDPELDTPLLGDPLRLFQVILNLIGNAIKFTEK-GSVSLTVDIVDSNEREL 276

Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
           +    + D G GI++  +  +  +F Q          G GLGL I+Q ++   G Q  + 
Sbjct: 277 TMKVCVADTGIGISDDNLHKLFQAFSQADTTTTRRFGGTGLGLNISQKLVNAMGSQITVE 336

Query: 460 SKLREGVEVIAILPNTRVLNF 480
           S+  +G E   ++   R  N 
Sbjct: 337 SEFGQGSEFSFVVTFARTTNE 357


>gi|156740961|ref|YP_001431090.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156232289|gb|ABU57072.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 471

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 136/368 (36%), Gaps = 24/368 (6%)

Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181
             +         P    +        A  +  L+   +  A+  +   ++V +     ++
Sbjct: 118 GNIIGYFFFVGPPPLPILNDPRWAAEAALLQRLTAATVLSAMGATVVALIVGIVLARTLT 177

Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241
             + +++ A                        +  + E  +L        +        
Sbjct: 178 RPIRELTAATRAMAQGRL----------DQRVTVRSRDEIGELAQAFNQMSADLG----- 222

Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301
                 A+ +  A ++H+LRTPL+ + G++E +    +              +H   +HL
Sbjct: 223 --RAIQARRQMTADLAHDLRTPLSIMRGYTEGLRDGRINGSP-----RIYQIMHGEVEHL 275

Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361
             LI+++  LS  +AG   L+  A+    ++    +   ++ + +   I  +   SL +V
Sbjct: 276 QRLIDDLRLLSLADAGALSLNRRAVDPRALLERAALAHMVQVESRGPTIRVEASDSLPAV 335

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421
           W D   M QV+ NLL+NA++ T   G + +       R   I ++D G GIA  ++P + 
Sbjct: 336 WVDTDRMAQVLNNLLANALRHTQE-GEIVLAAREAENRRIIIDVRDTGSGIAPEDLPHIF 394

Query: 422 TSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
             F +   A         GLGL IA++I+  HGG   + S +  G      LP       
Sbjct: 395 ERFYRADPARTRESGQSAGLGLAIAKAIVEAHGGSISVTSTVGIGTTFTITLPVAPASET 454

Query: 481 IPEDNHES 488
             E    S
Sbjct: 455 CTEPQTTS 462


>gi|324113624|gb|EGC07599.1| TMAO reductase sytem sensor TorS [Escherichia fergusonii B253]
          Length = 902

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDINSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIILR-SRTDGEQWLLEVEDSGCGIDPAKLTEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|320659602|gb|EFX27165.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 904

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|28900591|ref|NP_800246.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836434|ref|ZP_01989101.1| sensor kinase VbsS [Vibrio parahaemolyticus AQ3810]
 gi|260365471|ref|ZP_05778008.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877536|ref|ZP_05889891.1| sensor kinase VbsS [Vibrio parahaemolyticus AN-5034]
 gi|260897523|ref|ZP_05906019.1| sensor kinase VbsS [Vibrio parahaemolyticus Peru-466]
 gi|28808971|dbj|BAC62079.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750336|gb|EDM61081.1| sensor kinase VbsS [Vibrio parahaemolyticus AQ3810]
 gi|308087151|gb|EFO36846.1| sensor kinase VbsS [Vibrio parahaemolyticus Peru-466]
 gi|308090807|gb|EFO40502.1| sensor kinase VbsS [Vibrio parahaemolyticus AN-5034]
 gi|308114355|gb|EFO51895.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 1221

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I + +  +    + +K A+    A+  FLA+MSHELRTPL+A  G  +++  +       
Sbjct: 644 ITQQKEREQALIDAQKEAQTAVRARENFLATMSHELRTPLSAAHGILDLLNRQV----TA 699

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           ++ +E I    RS  HL  L++E+LD S++EAG+  ++ +   L+  + +     + RA 
Sbjct: 700 DSNRELIAQAMRSLNHLNVLVDEVLDYSKLEAGQLTVAPAKTDLLKTLCDVFRSFEPRAL 759

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
            K ++    I P S + +  D   + Q+  NLLSNAVKFTA  G + ++V     +   +
Sbjct: 760 AKGLDYKVTIKPFSDAFIEIDALRLVQITTNLLSNAVKFTAE-GEIGISV-ILHEKQLIL 817

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            + D G G+ +G++  +L  F Q   +I     G GLGL I   ++   GG   I S+  
Sbjct: 818 KVADTGIGMTDGQLEGILNPFVQADDSITRKYGGTGLGLSIVDRLIDCMGGVLCIDSQFG 877

Query: 464 EGVEVIAILPNTRVLNFIPE 483
            G  +   LP  R  +  PE
Sbjct: 878 LGTTITVKLPIER-CDSEPE 896


>gi|161367622|ref|NP_286929.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7
           EDL933]
 gi|162139802|ref|NP_309175.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           Sakai]
 gi|195935251|ref|ZP_03080633.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           EC4024]
 gi|254792250|ref|YP_003077087.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           TW14359]
 gi|291281991|ref|YP_003498809.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           CB9615]
 gi|17368203|sp|P58356|TORS_ECO57 RecName: Full=Sensor protein torS
 gi|254591650|gb|ACT71011.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli O157:H7 str. TW14359]
 gi|290761864|gb|ADD55825.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           CB9615]
          Length = 914

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 676


>gi|332664632|ref|YP_004447420.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333446|gb|AEE50547.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 425

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 5/277 (1%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
                  L  +N K+     E+    A L   +    +  ++  E N  KSRF++  SHE
Sbjct: 153 LAATVNQLLNTNHKLEFEIQERKVAEATLRKNEKELRKAFEKERELNTLKSRFVSMASHE 212

Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319
            RTPL+ IL  ++++E+        +   ++   I  +  +L++++N+ L LSR+E G+ 
Sbjct: 213 FRTPLSTILSSADLLEM-YTAEEQQDKRLKHTTRIKSAVNNLISVLNDFLSLSRLEEGKI 271

Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379
            L+    +L +   E +  +Q   +     +      S + V+ D+K ++ V +NL SNA
Sbjct: 272 NLTPVEFNLEEFCDEVLDDVQALLK-PGQVLQHHGLLSDTMVFLDKKMLKNVFINLFSNA 330

Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439
           +K++  G  +   V           I+D G GI E E   + T F +   A      G G
Sbjct: 331 IKYSEPGKMIDCYVEIME-NELCFRIQDYGIGIPEEEQQHLFTRFFRAHNAEN--IPGTG 387

Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           LGL I +  +    G+    S L EG      +P ++
Sbjct: 388 LGLNIVKRYVELMNGRIHFESTLGEGTVFHVHIPLSK 424


>gi|330998548|ref|ZP_08322368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329568146|gb|EGG49965.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1327

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 22/346 (6%)

Query: 164  FLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
            +++       L+   + S      +   + G+ +   +F   +    + S    +     
Sbjct: 712  YVAMVGSSGILTLNHLPSGTYKIRVKAIVNGLESDVKAFTVIVRSPWYASLPAFILYFLI 771

Query: 221  KDDLIAELEVAKSLSDETRKR------AEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274
               L+      + L ++ R R      AE+ N  K +F  +++HE+RTP+  I+G  + +
Sbjct: 772  VIFLVMRFIHGRRLREQARLRLQEHIHAEQLNEMKLQFFMNLNHEIRTPMTLIVGPLQHL 831

Query: 275  ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334
                     +E  +     ++R+ + +L L+N+ILDL +I+ G+  +    ++L+D  R+
Sbjct: 832  INTDF----DEIRQRSYRMMNRNAERILALVNQILDLRKIDKGQMMMKMQPVNLVDFTRD 887

Query: 335  CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
               +   +A+EK I    + D     VW D+K   +VI+NLLSNA KFT   G + + + 
Sbjct: 888  VYELFDSKAREKEIHFHFEYDADNIEVWLDKKNFDKVIMNLLSNAFKFTPSKGNIGIRLK 947

Query: 395  WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
               GR   + + D+G  I   ++  V   F Q          G G+GL + + ++  H G
Sbjct: 948  Q-GGREVSMEVWDDGLTIEPDKMDKVFQRFYQADNTANYNIPGSGIGLNLTKQLVTLHHG 1006

Query: 455  QFLI-RSKLREGVEVIAILP-------NTRVLNFIPEDNHESTQYK 492
            +  +  +   +G      LP          +L    E+  E +  K
Sbjct: 1007 EISVYNNADGKGCTFKVALPVGSAHLKPEELLQTPIEETTEESILK 1052


>gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 778

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|326939699|gb|AEA15595.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 357

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 153/349 (43%), Gaps = 16/349 (4%)

Query: 130 GTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185
                  L ++   T++ +    ++ S L+ F +  + F++F    +      I+   ++
Sbjct: 13  LKVFGAVLALFSFLTIIWSIAFYVATSILNAFDVNVSPFVAFLISDMVGFVFIILIWTLI 72

Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAE 243
            I +       +         + K +  +     EK   ++   ++    ++DE      
Sbjct: 73  GILMRPKREAMIWTIIEPIQKIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELN---- 128

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
                +  F++++SHE+++PL +I GF+  ++ + +   + E  K Y+  I      L  
Sbjct: 129 TMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNL---SEEKRKHYLTIIETETTRLSK 185

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           L   +L L+ +E+  Y     +  L   +++ ++  +    EK IE+   ++     V A
Sbjct: 186 LSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEK--VHVIA 243

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
           D++ M QV +NL+ N++KFT  GG + + +         + I+D+G GI+E +   +   
Sbjct: 244 DQESMSQVWINLIHNSIKFTPSGGTITIQLK-EHETVVEVRIRDSGIGISEEQKQHIFER 302

Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           F +   +   A  G GLGL I + ++  H G+  + S+   G E I  +
Sbjct: 303 FYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 351


>gi|296118917|ref|ZP_06837490.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968015|gb|EFG81267.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306]
          Length = 507

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 125/333 (37%), Gaps = 19/333 (5%)

Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213
           L    +   +      +++A+S    +   +  + +    A+ ++               
Sbjct: 140 LRGLAVVQLMIAVVVLMLIAISGFWFIRRALRPLRVVERTASEIAAGDLDKRVPEWPQHT 199

Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
            +   A    L   L   ++  +  + + E+      RF+   SHELRTPL ++ G++E+
Sbjct: 200 EVGQLAS--ALNIMLAKLQASIEHAQGKEEQM----RRFVGDASHELRTPLTSLRGYTEL 253

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
                   ++       +  I      +  L+ ++L L+R E  R ++    + ++++  
Sbjct: 254 YRSGITDDVDM-----VLSKIDAESSRMSYLVEDLLALTRAEGTRLDIR--PVDVLELSL 306

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
                 +    ++ I +       +  V+ D   + Q+ILNL++N ++       + + +
Sbjct: 307 SVASSARAAFTDRTINVSNDTL-GVPVVYGDASRLHQIILNLITNGIRHGGDEAEITIGL 365

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                    I + D G G+       +   F +   +      G GLGL I +S++  HG
Sbjct: 366 ERDGDD-VLIKVIDTGRGMDPEVSAHIFERFYREDTSRTRDTGGSGLGLAIVKSLVEQHG 424

Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           G   + S+L  G      LP        PE  H
Sbjct: 425 GSIDVESELGVGSTFTVRLPAA----DDPEPTH 453


>gi|229103156|ref|ZP_04233842.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228680261|gb|EEL34452.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
          Length = 312

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K   DE R+       AKS  + ++SH+LRTPL +I+G+  +I  +     +    +
Sbjct: 72  EQLKESIDEERQ----AEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNY--RDEVELR 125

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            YI  I+     L  L+N++ + +R++     L  + I +++++ +  +  +++ QE NI
Sbjct: 126 HYIQVIYGKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANI 185

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +           V AD   + +V  NL+ NA+ +   GG + +T  + S     I I + 
Sbjct: 186 QCRPSFPSQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTA-YESNNMITIDITNY 244

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G  I   ++P +   F +   +  +   G GLGL IA+SI+  H G   + S  ++    
Sbjct: 245 GQPIPSTDLPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKK-TTF 303

Query: 469 IAIL 472
              L
Sbjct: 304 TVKL 307


>gi|229116058|ref|ZP_04245451.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228667393|gb|EEL22842.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
          Length = 312

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K   DE R+       AKS  + ++SH+LRTPL +I+G+  +I  +     +    +
Sbjct: 72  EQLKESIDEERQ----AEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNY--RDEVELR 125

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            YI  I+     L  L+N++ + +R++     L  + I +++++ +  +  +++ QE NI
Sbjct: 126 HYIQVIYGKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANI 185

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +           V AD   + +V  NL+ NA+ +   GG + +T  + S     I I + 
Sbjct: 186 QCRPSFPSQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTA-YESNNMITIDITNY 244

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G  I   ++P +   F +   +  +   G GLGL IA+SI+  H G   + S  ++    
Sbjct: 245 GQPIPSTDLPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKK-TTF 303

Query: 469 IAIL 472
              L
Sbjct: 304 TVKL 307


>gi|225462102|ref|XP_002277460.1| PREDICTED: ethylene receptor-like [Vitis vinifera]
          Length = 742

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 46/344 (13%)

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             +V+ L + +    HV ++ L  ++A  ++           S+  IL       DL+ E
Sbjct: 275 ALMVLMLPSDSARQWHVHELELVEVVADQVAVAL--------SHAAILEESMRARDLLME 326

Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
                   D  R+ AE    A++ FLA M+HE+RTP++AI+  S +++   + P      
Sbjct: 327 ---QNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTP----EQ 379

Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
           +  +  I +S   L  LIN++LDLSR+E G  +L     +L  + RE + +++  A  K 
Sbjct: 380 RLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIKPIASVKK 439

Query: 348 IEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399
           + +   + P L      DEK + Q++LN++ NAVKF+   G + +               
Sbjct: 440 LFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNE-GNISIFAFIAKSESLRDSRA 498

Query: 400 ------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
                          + +KD+G GI   +I  + T F Q          G GLGL I + 
Sbjct: 499 PDFFPVHSDNHFYLRVQVKDSGAGIDPQDISKLFTKFAQCQSLAARNSGGSGLGLAICKR 558

Query: 448 IMANHGGQFLIRSK-LREGVE--VIAILPNTRVLNFIPEDNHES 488
            +   GG   I S+ L +G     I  L        IPE ++ES
Sbjct: 559 FVNLMGGHIWIESEGLGKGSTAVFIVKL-------GIPEYSNES 595


>gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 778

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|145357869|ref|NP_196633.2| AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase
           [Arabidopsis thaliana]
 gi|122227002|sp|Q3S4A7|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis
           histidine kinase 5; Short=AtHK5; AltName: Full=Protein
           AUTHENTIC HIS-KINASE 5; AltName: Full=Protein
           CYTOKININ-INDEPENDENT 2
 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana]
 gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana]
          Length = 922

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 43/289 (14%)

Query: 222 DDLIAELEVAKSLSDETRKRA------------EEENLAKSRFLASMSHELRTPLNAILG 269
           D ++   ++AK   D   ++A            EE   AK + LA+MSHE+R+PL+ ++G
Sbjct: 329 DQVVKREKMAKLREDNAVRKAMESELNKTIHITEETMRAK-QMLATMSHEIRSPLSGVVG 387

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            +E++    +    ++  ++ +  +  SG  +L LIN+ILDLS++E+G   L  +     
Sbjct: 388 MAEILSTTKL----DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMRLEATKFRPR 443

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
           ++V+  +       ++         D     V  D   +RQ++ NL+SNA+KFT   G V
Sbjct: 444 EVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHE-GNV 502

Query: 390 HVTVGWTSG-----------------------RGQYIS--IKDNGPGIAEGEIPTVLTSF 424
            + +   S                           +I   + D G GI E  +P +   +
Sbjct: 503 GIKLQVISEPSFVRDNALNADTEEHEQNGLTETSVWICCDVWDTGIGIPENALPCLFKKY 562

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            Q S        G GLGL I + ++   GGQ  + S++ EG     ILP
Sbjct: 563 MQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFILP 611


>gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 788

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 18/258 (6%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN--------- 284
              E   R  E +  KS FL+++SHELRTPL +ILGF+++I  E     +          
Sbjct: 521 ELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHFSPLAGDNPALA 580

Query: 285 ---ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ- 340
              +     +G ++   + L  LIN++LDL+RIE+G  +  +  I  + ++ + +  ++ 
Sbjct: 581 ARGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVAVLHQAVQSIEG 640

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           L AQ   I        S   +  D   + QVI NLL NAVKFT   G V + V   +   
Sbjct: 641 LLAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTER-GEVVLEVRAEAE-A 698

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQG---SIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
             ++++D G GI   ++ ++   F Q       +    +G GLGL I + I+ ++GG+  
Sbjct: 699 VLMTVRDQGVGIPADQLESIFDRFHQVGRGDTIVSPTIKGTGLGLAICRQIVRHYGGRIW 758

Query: 458 IRSKLREGVEVIAILPNT 475
             S+L EG      LP  
Sbjct: 759 AESRLGEGSAFHVRLPMA 776


>gi|153833234|ref|ZP_01985901.1| signal transduction histidine kinase [Vibrio harveyi HY01]
 gi|148870505|gb|EDL69420.1| signal transduction histidine kinase [Vibrio harveyi HY01]
          Length = 1200

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
             +    D I+EL+  ++    +  +A +   A+  FLA +SHELRTP+ A++G  E++E
Sbjct: 635 QYRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLE 694

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
            +    L  +  KE +    +S + L   +N+ILD S+I+A + +L     ++   +   
Sbjct: 695 QD----LERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGAT 750

Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
           +   +   + K++       P+  + V  D   + Q+I NLLSNAVKFT   G V V+V 
Sbjct: 751 LRSFEKIIERKSLAFELNWTPTPHALVVLDWLRVSQIINNLLSNAVKFTEE-GNVIVSVH 809

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454
            +  +     ++D G G+   ++ T+   F QG  +      G GLG+ I +S++    G
Sbjct: 810 VSPTQ-LEFKVQDTGCGMNSAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEG 868

Query: 455 QFLIRSKLREGVEVIAILP 473
              + S+  +G  +   LP
Sbjct: 869 TIEVDSQTEQGTTITVRLP 887


>gi|83942440|ref|ZP_00954901.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. EE-36]
 gi|83846533|gb|EAP84409.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. EE-36]
          Length = 347

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 8/235 (3%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  +  F+A++SHELRTPL A++GF E +        +      ++G +    + +  L
Sbjct: 111 ASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARD--DAPARDRFLGIMTGEAERMNRL 168

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           + ++L LSR+E+         + L  +++  +  L   A E N+ +   +      +  D
Sbjct: 169 VGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDPLPLMGD 228

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGEIP 418
              + QV  NL+ N +K+  +G  V ++V  T       G    ++I+D+GPGI    +P
Sbjct: 229 TDQLLQVFTNLIENGIKYGGVGKEVEISVETTLRDPSLRGPAVRVTIRDHGPGIDPVHLP 288

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +       A  G GLGL I + I+  H G+  I S L +G     ILP
Sbjct: 289 RLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVILP 343


>gi|332161273|ref|YP_004297850.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665503|gb|ADZ42147.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1239

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 10/269 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+   E       
Sbjct: 680 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL---EIRSEQPV 736

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
           +  K  +  + +S Q L+ L+++I+D ++IEAG+  +  + +     +     + Q  A 
Sbjct: 737 D--KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQPIAD 794

Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402
           E+N+     +D  +   V  D   +RQV+ NLL NA+KFT  G   V +T      +   
Sbjct: 795 ERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDDKHGV 854

Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + S
Sbjct: 855 TNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEITLES 914

Query: 461 KLREGVEVIAILPNTRV-LNFIPEDNHES 488
           +L +G  +   LP      + +P+++  +
Sbjct: 915 QLGKGTSLFITLPLEVASADDLPQESATA 943


>gi|218245357|ref|YP_002370728.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218165835|gb|ACK64572.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 364

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 147/367 (40%), Gaps = 12/367 (3%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               L     + +   LL+ +     +   + + +   L      +  +        F +
Sbjct: 6   LRTRLFLSHLLVMIVGLLSFIIIAKISSPRMFVLRLEQLEKRGFFTVRTARTYLVKGFET 65

Query: 167 FFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            +      S     S   +L   ++  +   L+    IT  L + N++    +++  +L 
Sbjct: 66  AWNNSAIWSVIFGGSAAGLLSYWVSCRIMQPLNQMKEITEKLAEGNLEERMPESDIPELN 125

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   +++      E     +   ++ M+HELRTPL  + G+ E +   ++ P    
Sbjct: 126 QLGMSFNYMAN----SLENVEKRRRELVSDMTHELRTPLTVVRGYLEELADNSIEPSP-- 179

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E    + +  + L  LI ++ +LS+ EAG   ++   I+LI I+   +     +  +
Sbjct: 180 ---ELYLKLVKETRRLERLIQDLQELSKAEAGYLSITLRPINLIPILIALLEKFSDQILD 236

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           +   +      SL  V AD   + Q+++NL+ NA+++T   G + +   W      +IS+
Sbjct: 237 EGPLLKLDYPKSLPPVLADSDRIEQILVNLIGNAIRYTET-GTITIKA-WRDRHRVFISV 294

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   ++P V   F +   +      G G+GL I + ++   GG   + S+L +G
Sbjct: 295 IDTGIGIKPEDLPFVFERFWRADKSRSRYSGGTGIGLAITRRLVELQGGNIEVSSQLGKG 354

Query: 466 VEVIAIL 472
                 L
Sbjct: 355 STFTFYL 361


>gi|157156979|ref|YP_001461579.1| phosphate regulon sensor protein [Escherichia coli E24377A]
 gi|157159918|ref|YP_001457236.1| phosphate regulon sensor protein [Escherichia coli HS]
 gi|193065208|ref|ZP_03046281.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194428791|ref|ZP_03061326.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209917611|ref|YP_002291695.1| phosphate regulon sensor protein [Escherichia coli SE11]
 gi|218552962|ref|YP_002385875.1| phosphate regulon sensor protein [Escherichia coli IAI1]
 gi|300818278|ref|ZP_07098489.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300820363|ref|ZP_07100515.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300924117|ref|ZP_07140110.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|301330742|ref|ZP_07223343.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|331666747|ref|ZP_08367621.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331676065|ref|ZP_08376777.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
 gi|157065598|gb|ABV04853.1| phosphate regulon sensor protein PhoR [Escherichia coli HS]
 gi|157079009|gb|ABV18717.1| phosphate regulon sensor protein PhoR [Escherichia coli E24377A]
 gi|192927182|gb|EDV81803.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194413094|gb|EDX29381.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209910870|dbj|BAG75944.1| two-component sensor kinase [Escherichia coli SE11]
 gi|218359730|emb|CAQ97271.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli IAI1]
 gi|300419670|gb|EFK02981.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|300527148|gb|EFK48217.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300529169|gb|EFK50231.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300843314|gb|EFK71074.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|320201641|gb|EFW76217.1| phosphate regulon sensor protein [Escherichia coli EC4100B]
 gi|323160494|gb|EFZ46442.1| phosphate regulon sensor kinase PhoR [Escherichia coli E128010]
 gi|323184775|gb|EFZ70146.1| phosphate regulon sensor kinase PhoR [Escherichia coli 1357]
 gi|323945299|gb|EGB41355.1| phosphate regulon sensor kinase PhoR [Escherichia coli H120]
 gi|324016660|gb|EGB85879.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 117-3]
 gi|331065971|gb|EGI37855.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331076123|gb|EGI47405.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
          Length = 431

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 147/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCFPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA    L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLNIESTVGKGTRFSFVIP 422


>gi|332799977|ref|YP_004461476.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697712|gb|AEE92169.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 426

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 4/282 (1%)

Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252
               + F    +     +N+           L     V+K  +D   K  +E    + +F
Sbjct: 144 AGYQIVFLDITSRQGILTNLIYTFLFVALIMLFIIFFVSKFFADRAIKPVQEAFEKQKQF 203

Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312
           +A  SHEL+TPL  I   ++V+       + N    +++  I    + +  L N++L L+
Sbjct: 204 IADASHELKTPLAIINTNADVLLANPQDYIKN--QSKWLYYIKSEAERMTKLTNDLLYLA 261

Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372
           +++    ++  +  +L  +V   I+ ++    E  I +  +I+P+L  +    + ++Q +
Sbjct: 262 QMDYSDVKMIFTDFNLSQLVENAILTMEAVFFEHGISLEYEIEPNLI-ICGSCEQIQQAV 320

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
             LL NAVK+T   G+V V++         +S+ + G GI +  I  V   F +   +  
Sbjct: 321 TILLDNAVKYTNTKGKVIVSLKRQQSN-VLLSVANTGEGIPQENISKVFDRFYRTDESRT 379

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               G GLGL IA++I+  HGG+  ++S   E       LP 
Sbjct: 380 RKSGGYGLGLAIAKTIIEQHGGKISVKSNPNENTIFYVKLPA 421


>gi|222526335|ref|YP_002570806.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
 gi|222450214|gb|ACM54480.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
          Length = 425

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 21/248 (8%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
              A+   +A++SHELRTPL ++     ++          +     +  + +    +  L
Sbjct: 182 LERARRDLVANVSHELRTPLASLK----LLVETVQSAPPPDIASRMLEQMAQEIDAVTQL 237

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++E+ +LSR+E+GR  L    + +  ++   +  ++ +A  K   I  +    L     D
Sbjct: 238 VDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMD 297

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------------SGRGQYISIKD 407
              + QV+LNLL NAVKFT  GG + V                      +G    I + D
Sbjct: 298 GDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSD 357

Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
            G GI   +I  +   F +   A      G GLGL IA+ ++  HGG+    S+   G  
Sbjct: 358 TGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGST 417

Query: 468 VIAILPNT 475
               LP  
Sbjct: 418 FWFTLPAA 425


>gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
 gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
          Length = 831

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 12/278 (4%)

Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271
           +K++  Q E+  L  EL    +   E        N  KS FLA++ HELR PL  I    
Sbjct: 425 MKVMRDQTEQKRLEDELRKTAADLSEA-------NRRKSEFLATLGHELRNPLAPIRMGL 477

Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331
           E++++    P   E  +   G + R    ++ LI+++LD+SRI  G+ +L    +++ ++
Sbjct: 478 ELMKMAADSPAKMEEIR---GMMERQVLQMVRLIDDLLDVSRITRGKLQLRICRVAVANV 534

Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
           V+  + M +    E + ++   + P    + AD   + QV  NLL+N+ K+T  GG + +
Sbjct: 535 VQNAVEMARPFIDEADHQLTVAVPPQPIHLDADPNRLAQVFSNLLNNSAKYTPEGGHIWL 594

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
           +          ++I+DNG GI      ++   F Q    ++    G+G+GL + + ++  
Sbjct: 595 SAERQGSD-VVVTIRDNGIGIPADMQTSIFEMFTQVDRPLEQGYTGLGIGLTLVKQLVEM 653

Query: 452 HGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHES 488
           HGG+   RS+    G      LP       +     E+
Sbjct: 654 HGGRIDARSEGSGRGSAFEVRLPLKGRELRVQSPETEA 691


>gi|329928018|ref|ZP_08282022.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328938122|gb|EGG34519.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 359

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 157/381 (41%), Gaps = 31/381 (8%)

Query: 93  VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152
           +      + ++    I  ++    +G  WT  T V    +       +  A  LI L + 
Sbjct: 1   MRRPLKILWKIVRETIQTILIFAVLGASWTAATYVTRFVYNWTGTPPWDYAVQLIDLFVG 60

Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212
            +  F+    V + F    +A+         +  I+ A    +   F   +  H ++   
Sbjct: 61  VIIFFLCMLVVGMFFKHRQMAM---------LNSITDAMRRISQGDFSVKMDEHQWRGEF 111

Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272
           ++++     +D+  EL   +++              +  F++++SHE+++PL +I GF+ 
Sbjct: 112 RMIASGI--NDMAGELGRMETM--------------RQDFISNVSHEIQSPLTSIRGFAR 155

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
            +    +     E    Y+  I   G+ L  L + +L LS +E  +     +   L   +
Sbjct: 156 ALRNPRL---TEEKRARYLEIIEGEGRRLSQLSDNLLKLSSLEGDQPAFERARYRLDGQL 212

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392
           R  ++  + +   K I++   +      + A E  + QV  NLL N++KFT   G + + 
Sbjct: 213 RAVVLAHEPQWLAKRIQVDLDLAE--VEIKATEDLLSQVWTNLLHNSIKFTPEDGMITI- 269

Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452
           V      G  +++ D G G+++ +   +   F +   +   A  G GLGL I + I+  H
Sbjct: 270 VLKAGEDGAEVTMTDTGVGMSDSDQLHIFERFYKADKSRNRAAGGSGLGLSIVKRIVDIH 329

Query: 453 GGQFLIRSKLREGVEVIAILP 473
            G+  ++S+  +G     ++P
Sbjct: 330 QGRITVQSEPGKGSAFTVVVP 350


>gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1314

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 144/292 (49%), Gaps = 15/292 (5%)

Query: 184  VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243
            +       +   + +   ++    ++        +A++ +L  + +VA    ++ ++R  
Sbjct: 758  LPPWYKTTLAYLSYAVLLFLVLSWYR------RVRAKQREL--QNKVALEQMEKQKER-- 807

Query: 244  EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
            E +  K  F  ++SHELRTPL+ IL  ++ +    + P +    K  +  +H+    LL 
Sbjct: 808  ELSEMKLNFFTNVSHELRTPLSLILHPADDLVK-AVEPGSEAHGKAVL--VHKQAHKLLT 864

Query: 304  LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
            L+N+++DL ++E+G   +    + +I  +RE  ++ +++A+EKNI+     D +      
Sbjct: 865  LVNQLMDLRKVESGNMPIHLEKVDVISFIREIFLIFKIKAEEKNIQYEFLSDHTELVADF 924

Query: 364  DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423
            D   +  ++ NLLSNA K+T  GG++ ++V  T  +   ++ KD+G GI   +I  +   
Sbjct: 925  DIAKLEIILTNLLSNAFKYTQSGGQIQLSVQKTENQSLCLTFKDSGIGIHPQDIKNIFEP 984

Query: 424  FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F Q     +S   G G+GL + + ++   GG+ L+ S L EG      LP  
Sbjct: 985  FYQSVN--RSKIPGTGIGLSLVKELVQMLGGEILVESILGEGSTFAVKLPLQ 1034


>gi|254483583|ref|ZP_05096807.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214036145|gb|EEB76828.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 635

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 10/305 (3%)

Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234
               + S H      +            +  +   + + +   +     L  +    KS 
Sbjct: 171 VIGVLDSEHPDADFFSTEDVQLFKTIAALASNRIDTAIAMERLEQAVLVLSEKEAELKSQ 230

Query: 235 ---SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R+ AE  + AKSRFLA+M+HE+RTP+ +I+G+++++    +  +    ++  +
Sbjct: 231 ALDLTKARRSAESASEAKSRFLANMTHEIRTPMTSIVGYADLLSAGELDDVQKIKWRRQL 290

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
                S +HL  LI  +LD++ +EAG+  L    ISL D + +C+   + RA+ K++E+ 
Sbjct: 291 ---ISSTRHLQELIGNVLDVAAVEAGKATLDLDRISLTDFLDDCVENQRPRAKSKDLELI 347

Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR-GQYISIKDN 408
                ++   V  D   +RQ++ NL+SNA+K+T  G  +V V+    +        I+D 
Sbjct: 348 IDYQGTVPTEVVVDRVKVRQILTNLISNALKYTKEGYVKVTVSAAPVNSGCKLIFQIEDT 407

Query: 409 GPGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467
           G G+A   I      F +    +  +  +G GLGL +  S++    G    +S+   G  
Sbjct: 408 GCGMAPELINEAFLPFSRLHKTSNANEIEGAGLGLALVTSLLKLMQGSLEAQSEEGRGTT 467

Query: 468 VIAIL 472
               L
Sbjct: 468 FTIAL 472


>gi|15800126|ref|NP_286138.1| phosphate regulon sensor protein [Escherichia coli O157:H7 EDL933]
 gi|15829704|ref|NP_308477.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749853|ref|ZP_02774875.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|168756933|ref|ZP_02781940.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|168761597|ref|ZP_02786604.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|168768342|ref|ZP_02793349.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|168776303|ref|ZP_02801310.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|168783257|ref|ZP_02808264.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786238|ref|ZP_02811245.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|168800274|ref|ZP_02825281.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|195938539|ref|ZP_03083921.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807468|ref|ZP_03249805.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208815881|ref|ZP_03257060.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823245|ref|ZP_03263563.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398260|ref|YP_002269038.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|217325530|ref|ZP_03441614.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254791578|ref|YP_003076415.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223876|ref|ZP_05938157.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256410|ref|ZP_05948943.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK966]
 gi|12513246|gb|AAG54746.1|AE005219_2 positive and negative sensor protein for pho regulon [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359907|dbj|BAB33873.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli O157:H7 str. Sakai]
 gi|187768310|gb|EDU32154.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|188015838|gb|EDU53960.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|188999394|gb|EDU68380.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|189356011|gb|EDU74430.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|189362390|gb|EDU80809.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|189368101|gb|EDU86517.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373469|gb|EDU91885.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|189377386|gb|EDU95802.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|208727269|gb|EDZ76870.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732529|gb|EDZ81217.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737438|gb|EDZ85122.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159660|gb|ACI37093.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|209744226|gb|ACI70420.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744228|gb|ACI70421.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744232|gb|ACI70423.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|217321751|gb|EEC30175.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254590978|gb|ACT70339.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. TW14359]
 gi|320192811|gb|EFW67451.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638388|gb|EFX08102.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           G5101]
 gi|326341158|gb|EGD64950.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1044]
 gi|326346066|gb|EGD69805.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1125]
          Length = 431

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 151/445 (33%), Gaps = 25/445 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R VI NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSVISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
            +  I S + +G     ++P   ++
Sbjct: 403 SRLNIESTVGKGTRFSFVIPERLIV 427


>gi|295697226|ref|YP_003590464.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412828|gb|ADG07320.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 444

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 245 ENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
             +AK +  F A  SH+LRTPL  I   +E+     +G  + E +++ +        H+ 
Sbjct: 212 AQMAKRQQSFTADASHQLRTPLTVIRTTAEL----ALGTDDPEEWRDALETTVAETHHMS 267

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            ++  +  L+R++     +  S  ++ D+V E    ++  A EK +      +     + 
Sbjct: 268 RMVESLATLARMDYEEGAVKRSPFAVRDLVEEVAAHIEPLAGEKGVAFHA-PEAGEDRLV 326

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + Q++  LL NA+K+T  GG V+ +    +G     +++D G GIA  E+P +  
Sbjct: 327 GDQHRIWQLLTVLLENAIKYTPEGGHVYFSYRR-NGPEAVFTVRDTGIGIAREELPHIFD 385

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
            F +GS+  K    G GLGL IA+ I   HGG   + S++  G      LP  
Sbjct: 386 RFYRGSVVQKERIPGSGLGLSIAKEIAELHGGTIHVDSEVGVGTTFTVSLPIA 438


>gi|126651422|ref|ZP_01723626.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591675|gb|EAZ85771.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 466

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 9/302 (2%)

Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230
            + +   + +    + I L+  LA  L      T  + K +  +      KD+L      
Sbjct: 160 FLIVGIVSGLVTIAVIIVLSRKLAEPLIQMKEATLKMSKGDFTVALSTNGKDELGDLSNA 219

Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
            + LS+E           +  FL+S++HELRTP+  I G+++++    +   +    ++Y
Sbjct: 220 IQLLSNELNH----LRQERKEFLSSIAHELRTPITFIKGYTDILYKRDLSVQD---RQKY 272

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I      L  LI ++ DL++++   + + +  + L          L    QEK+I  
Sbjct: 273 LAIILEETNRLSRLIKDLFDLAKMDENSFVIEKQNLDLQAFFTGIKGKLSPAFQEKDIHF 332

Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
               +  L ++WADE  + Q+I+NLL+NA+ +   G    V V         I I+D G 
Sbjct: 333 DVCCEKGL-TLWADEARLEQIIINLLNNALTYCGQGDTTTVDVKKV-NGVLTIIIRDTGR 390

Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470
           GI   ++P +   F +   +   A  G GLGL I + ++  HGG+  ++S+L +G     
Sbjct: 391 GIPNKDLPFIFERFYRVEKSRSRALGGTGLGLAIVKELVQAHGGEVTVKSELNKGTVFEL 450

Query: 471 IL 472
             
Sbjct: 451 SF 452


>gi|86143379|ref|ZP_01061781.1| histidine kinase response regulator hybrid protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85830284|gb|EAQ48744.1| histidine kinase response regulator hybrid protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 685

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248
           LA          +     L   N    +  +    +  +L+      +E   +A + ++A
Sbjct: 257 LADYALGVGLILSLAIGLLSFFNRNAQNAASRTLRMNKKLKELNLSLEEQTLKANQASIA 316

Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           K+ FL++MSHE+RTPLNAI+G S++I        N    + Y+  + +S + LLNLIN+I
Sbjct: 317 KTEFLSNMSHEIRTPLNAIVGISDLIGSG----NNKFEEEHYLSLLKQSSKTLLNLINDI 372

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367
           L L ++E+G  E++      ++I+           + K++++   +D  + S V  D   
Sbjct: 373 LRLDKMESGFSEVAHIEFCPLNIIENLRQFNLQPVKSKDLDLEVVVDTKTKSYVLGDRAK 432

Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSF 424
             Q++ N++SNA+KFT   G++ +              I + D G GI E +I  +   F
Sbjct: 433 FEQILNNIVSNAIKFTQK-GKIAIHYSERQENNKVAVEIRVTDTGIGIPEDKINDIFDRF 491

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            Q    ++    G G+GL I + ++   GG   ++SK+ EG E    L
Sbjct: 492 IQLDTGMRKKHSGGGIGLSIVKHLVELLGGTISVKSKVGEGSEFKINL 539


>gi|296104922|ref|YP_003615068.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059381|gb|ADF64119.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 777

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 8/254 (3%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLSFVMEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V + +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVVTDGTRLRQILWNLISNAVKFTQQ-GQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKSMGGDITVASQAGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHESTQ 490
           V   + ED  E   
Sbjct: 508 VAEEV-EDTFEQDD 520


>gi|254423237|ref|ZP_05036955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190726|gb|EDX85690.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 378

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 143/374 (38%), Gaps = 16/374 (4%)

Query: 107 RIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           R  LLV Q+  + +    L +V        ++   +   L        +   +L      
Sbjct: 13  RNQLLVSQLSVLAVAIASLAIVSRLYTPRYFVVTLERMELRGVRVQQQVKGQLLKGFEGA 72

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               +  +       +       L+  +   L     +T      +        E  +  
Sbjct: 73  WVRGLFWSFVLGGASAGGA-SWWLSRRITKPLLRMESVTQQFAAGDFSSRVPPLEIPEFD 131

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   ++D+     E     +   +  ++HELRTPL  + G+ E +    + P   E
Sbjct: 132 RLGHSFNRMADD----LEGVEQRRRELVGDLTHELRTPLTIVKGYLEGLADGAISP-TPE 186

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-AQ 344
           TY           + L  L+N++ +LS++E+G   +   A++++ +V +       +   
Sbjct: 187 TYDRLA----NETERLRRLVNDLQELSKLESGYLPIHPQAVNIVPLVTQVCDRFADQLIN 242

Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQ 401
              +++  +  P L  VW D   + Q+++NLLSNA++ T   G V+V V        +  
Sbjct: 243 SDQLKLTTEFSPDLLPVWGDPARIEQILVNLLSNALRHTKA-GEVNVRVYTQATNDAKLV 301

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461
           +I++ D G GI + +IP V   F +   +      G G+GL I + ++   GG     S+
Sbjct: 302 WIAVSDTGEGIKKTDIPRVFERFWRADRSRDRISGGSGIGLAICRRLVELQGGTITATSE 361

Query: 462 LREGVEVIAILPNT 475
           +  G      LP  
Sbjct: 362 IGVGSTFTFSLPVA 375


>gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27]
 gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27]
          Length = 468

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 147/364 (40%), Gaps = 25/364 (6%)

Query: 118 GLCWTLLTLVEPGTWTPEYLTIYK------SATLLIALSISALSNFMLPYAVFLSFFPVV 171
           G  W    L  P    P  L +Y        +  +   ++          A    F  + 
Sbjct: 117 GEVWAYAEL--PREGHPLRLLVYARKVEVNLSGSVWKGALLVGRPTEDLEATLSQFARIY 174

Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231
              +   ++    L   L       L +       +      +   +  +D++ A ++  
Sbjct: 175 AGTALFVLLLSLFLARGLVARALEPLEWAARKAEAMSARPEPLPEPET-RDEVAALVKAL 233

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
             +      R +E   A++RFL   SHELRTP+ AILG    +          E  +E +
Sbjct: 234 NGMLT----RLQEAFEAQTRFLQDASHELRTPITAILGHVGYLLRR---TPLTEAQRESL 286

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             + R  + +  L++++LDLS  ++G + +    + ++D++ E        A+  +  I 
Sbjct: 287 EVVKREAERMGKLVSDLLDLS--QSGTWRIRPVPVRVLDLLEEVREEF---AKSFDGAIL 341

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
            +    L  V  D   + QV+ NL+SNA+K  A    V +   +  G    + ++D+G G
Sbjct: 342 VEAPEDL-YVLGDPDRLHQVMANLVSNALKAGAR--HVWLRA-FDLGDKAVVRVEDDGEG 397

Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471
           I E  +P +   F +   A      G GLGL I ++I+  HGG+  + S++ +G      
Sbjct: 398 IPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILEAHGGEVWVESQVGKGTAFSFS 457

Query: 472 LPNT 475
           LP +
Sbjct: 458 LPAS 461


>gi|326693101|ref|ZP_08230106.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 623

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 108/239 (45%), Gaps = 12/239 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F++++SHELRTPL ++  + + +    +   + E  + ++  +    Q ++
Sbjct: 372 QRIDSERRMFVSNVSHELRTPLTSVRSYVDALAEGAI--NDPEMAQNFLDVVQDETQRMI 429

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK---------NIEIFQK 353
            +IN++L+LSR++ G  ++    ++L  +    +    +  +           +  I ++
Sbjct: 430 RMINDLLELSRLDQGTMDVKLEVVNLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIKRE 489

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                     D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI 
Sbjct: 490 FTNEDVWAEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTK-TRAILSISDQGLGIP 548

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             ++  +   F +   +   A+ G GLGL I++ ++    G+  + S   +G      L
Sbjct: 549 RKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL 607


>gi|290968484|ref|ZP_06560023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781480|gb|EFD94069.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 554

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 12/274 (4%)

Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261
           +      +     LS     D ++  + +A  ++++      E    +  F A++SHEL+
Sbjct: 290 FRENRNGREYQFDLSRIVSDDAVVGTVILAFDITEQA-----EAERGRREFTANVSHELK 344

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL  I+G+++++E       +      ++G I +    L+ LI +I+ LS+++ G  ++
Sbjct: 345 TPLQGIIGYTDLMESGLAKSEDIP---RFVGYIKKEASRLVTLIEDIIRLSQLDEGT-DM 400

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
             + +SL  +  E    L   A+ KNI +         +++  ++ + +++ NL  NA+ 
Sbjct: 401 PVAEVSLGHLADEVCKTLFDAAKSKNISLSWSGADG--NMYGVKRLLYEIVYNLCDNAIT 458

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           +   GG V +TV     +   + + D G GI       V   F +   +      G GLG
Sbjct: 459 YNRSGGSVKITVS-EDDKNVRLEVADTGIGIPAEHQERVFERFYRVDKSHSKQSGGTGLG 517

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           L I +  +A H G+  + S+  +G  +    P  
Sbjct: 518 LSIVKHAVAYHHGKIALESEPNKGTVITVAFPKK 551


>gi|115374056|ref|ZP_01461345.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella
           aurantiaca DW4/3-1]
 gi|310819376|ref|YP_003951734.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368946|gb|EAU67892.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392448|gb|ADO69907.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 506

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            +  K+ F++ +SHELRTPL +I  F E + L  +   +    +E +  + R  + L  L
Sbjct: 277 LSRLKTDFVSLVSHELRTPLTSIRMFIETLALGRL--KDPAQTQEVLQLLSRETERLSAL 334

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           I  +LD +R+E+GR E      ++ D+V   +   + +  +  +E+   +   L  V  D
Sbjct: 335 IERVLDWARLESGRKEYQREPTAVADVVDTAVAAFRAQRLDGGVELKVDVPSGLPQVEVD 394

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
              +   +LNLL NA K++    R+ ++V     R   +S++DNG GIA  +   +   F
Sbjct: 395 RHAVAGALLNLLQNAYKYSGQDKRIALSV-RADRRWVALSVEDNGVGIAPRDRQRIFERF 453

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            +    +    +G GLGL I + I+  HGG+  ++SKL +G      LP  + 
Sbjct: 454 YRVDNLLTRKTEGSGLGLAITKRIIEAHGGRISVQSKLGKGSLFTLQLPAGKA 506


>gi|325262230|ref|ZP_08128968.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324033684|gb|EGB94961.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 932

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 11/235 (4%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N AKS FL+ MSH++RTP+NAI+GF+ +     +   + +   E +  I  SG +L  L
Sbjct: 549 ANAAKSDFLSRMSHDMRTPMNAIIGFAHI----GIESHDPDESAECLQKIKASGHYLEGL 604

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363
           IN++LD+S+IE G+ EL        +       +L  +AQ+K +    +    +  +V  
Sbjct: 605 INDVLDMSKIEEGKLELHPEPYYYTEFEETIRTILMQKAQQKGVMFVMRNSVKVHSAVAL 664

Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIP 418
           D+   +QV +NL+ NA+KFT  GGRV  +V   +            ++DNG G++E    
Sbjct: 665 DKLRTQQVFVNLIGNAIKFTPRGGRVEFSVTAQAAEPDGTLPLTFIVRDNGIGMSEEFQK 724

Query: 419 -TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             +  SF Q   ++   E G GLGL IA+ ++   GG    +S+L +G      L
Sbjct: 725 SKLFHSFEQEHNSVLQVEAGTGLGLSIAKQLVNQMGGSIECQSELGKGTAFTVKL 779


>gi|317404462|gb|EFV84874.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 435

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 148/426 (34%), Gaps = 28/426 (6%)

Query: 64  TWFTQNPIFPMWSLITLAVYAANLS---LGKKVMNSD--IKIGEVYVWRIWLLVGQIAIG 118
                   + ++S   + +         L               V  W   L        
Sbjct: 22  WLIGDPAGWVLFSAALVVMLLWRSWRLHLVSHWARHPDTSPPASVGPWDDILAPLYRYTR 81

Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178
                    E          +  +A  L   +++   +F + +   ++   + + L    
Sbjct: 82  A-----RARELAETRDTMQGMLAAAQALPDGAVTLNEDFQIDWCNRMARQHLGLRLPADR 136

Query: 179 I-----MSMHVLDISLAGMLATALSFFTYIT-YHLFKSNVKILSCQAEKDDLIAELEVAK 232
                 +      +  A   +        +      +  +  L+  A    L+   +V +
Sbjct: 137 GHNLLNLLRAPEFVEYAHRASWPDPILVRLGQNGQERLMMMQLTAYASNQRLLITRDVTQ 196

Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292
               ET +R          F+A++SHELRTPL  + GF E +       L  E   +Y+ 
Sbjct: 197 IERLETTRR---------DFVANVSHELRTPLTVLAGFLETLRDMPADALPPEQRAQYLD 247

Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352
            +H   Q +  ++ ++L LS +E+        A+++  ++++    ++  A      + +
Sbjct: 248 MMHEQAQRMQAIVEDLLTLSTLESSPGS-DPRAVNMGALLQKARQQIE--ALSGGRHVIE 304

Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
                   V   E  +   + NLL+NAV++T  GG + V     +  G   S++D G GI
Sbjct: 305 WHIDETVDVLGAETELTSALSNLLTNAVRYTPDGGTITVRWEREADGGGRYSVQDTGIGI 364

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
               IP +   F +       A  G GLGL I + I   H  + LI S+  +G       
Sbjct: 365 PARHIPRLTERFYRVDRGRSRAVGGTGLGLAITKHIAMRHDAELLISSEPGKGSLFALRF 424

Query: 473 PNTRVL 478
           P  R+ 
Sbjct: 425 PPDRIA 430


>gi|120435983|ref|YP_861669.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117578133|emb|CAL66602.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 660

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 15/273 (5%)

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
           +HL ++             + +  E+ K   +E R         K  FL  +SHEL+TP+
Sbjct: 399 WHLNRATAIRNEEGEITSWITSSTEIQKLKDEENR---------KEGFLKLVSHELKTPV 449

Query: 265 NAILGFSEVIEL---ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
            +I G+ +++     E          K Y+  I    + L+ LI+E+LDLSRIE    EL
Sbjct: 450 TSIKGYVQLLLTMLPEANQENGELPVKPYLNRIETQVERLIRLISEMLDLSRIEHNEMEL 509

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
            +   SL   V E I  +    +E  IE+    +     V AD+  + QVI+N ++NA+K
Sbjct: 510 KKEKFSLNHHVEEIIEDISYSNKEVQIELKHHCECD---VIADKDRIGQVIINFITNALK 566

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           ++    RV VTV   +     +S+KD G GI + EI  +   F + S        G G+G
Sbjct: 567 YSPEDNRVEVTVYNKTENEVAVSVKDFGIGIEKKEINKIFKRFYRVSGNRDETYAGFGIG 626

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           L ++  I+  H G+ ++ S+   G E I +LP 
Sbjct: 627 LYLSNEIVKRHNGKIVVNSEFGIGSEFIFVLPL 659


>gi|42522901|ref|NP_968281.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39574097|emb|CAE79274.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 712

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
           +    +    ++ N   +  +A         +  + L    R   E  N AKS  LA+ S
Sbjct: 282 ARHVALKGRFYR-NPDNVPYRATGIAWDITTKRNEELLRRERDLHEAANNAKSVLLANAS 340

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTPL AILGF++ +      P  ++  +  +  IHR G  + +L+N++LDLS+IE  
Sbjct: 341 HEIRTPLAAILGFADTLLR---SPHLDDQSRRDVQSIHRQGNFMASLVNDLLDLSKIETN 397

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLL 376
           R  + ++ ++    + + + +++   +++  +I    +  +  +  +D    RQV++NLL
Sbjct: 398 RLYIQKAPMNPARELEDSLSVIRSALEDQKHDIQIYYESQIPEIIESDSVRFRQVLINLL 457

Query: 377 SNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           SNAVKFT   G + V VG+ S         I + D G G+ +     +   F +G  A  
Sbjct: 458 SNAVKFTHE-GTITVRVGFYSDTDNTGHLTICVTDTGMGMDDATQKNLFQPFVRGESAEV 516

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAIL 472
              QG GLGL +++ +     G+   + S+L +G      L
Sbjct: 517 QRVQGSGLGLALSERLARMMNGRLRLVSSELGKGSSFELSL 557



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 9/208 (4%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQN----PIFPMWSLITLAVYAANLSLGK 91
           ++    ++ ++R S    + +   A    + + N         W  +        LS+  
Sbjct: 21  DLAVRKIDLIYRQSINGVIVIFANAAAFLYISWNNVSQAFSLTWVSVLFTSVLIRLSMLY 80

Query: 92  KVMNSDI---KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148
           +          + E + W   +    +  GLCW  + LV P   T + +        + A
Sbjct: 81  RWKRVKPTLRHVDETHFWHRTMCGLLLISGLCWAAVGLVAPYGSTIQQILTALLVCSMSA 140

Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208
            ++    +     A+     P ++      + S     + +  ++         +  +L 
Sbjct: 141 GAMITYVSS--RVAMMCVVAPAMLGWGIGYVTSGQQHHLLVGMLVMVYCGLMIVMGKNLN 198

Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSD 236
           ++ +K+L+   +       L ++ + SD
Sbjct: 199 QAIIKLLTLDTKLQKNEEHLRMSMASSD 226


>gi|88812847|ref|ZP_01128092.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
 gi|88789917|gb|EAR21039.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
          Length = 1656

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 8/272 (2%)

Query: 216  SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                   D+     + + +  + ++ AE  +  K  FLA ++HELR PL  I    ++I 
Sbjct: 1258 RASKIARDITERKRMERQIQGQAKELAE-VSRRKDEFLAMLAHELRNPLAPIFNALQLIG 1316

Query: 276  LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
             +    L+ E        I R  +H+  LI+++LD+SRI +GR  L    + L  IV   
Sbjct: 1317 QKGENALHEEAR----EIIERQVRHMARLIDDLLDVSRITSGRIRLRPERVDLNTIVERA 1372

Query: 336  IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395
            +  ++     +  ++  +       + AD   + Q+  NLL NA K++   G + + +  
Sbjct: 1373 VERMRPLIDRRGQQLSIEPAQQPIWLDADPTRLEQIFGNLLDNASKYSTNNGHIDLRIER 1432

Query: 396  TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455
               R     ++D+G GIA   +P +   FGQ   +++ +E G+G+GL + +S++  HGG 
Sbjct: 1433 DDHRAIS-RVRDDGEGIAADTLPRIFELFGQAERSLERSEGGLGIGLALVKSLVEMHGGT 1491

Query: 456  FLIRSK-LREGVEVIAILPNTRVLNFIPEDNH 486
                S+ L  G E +  LP        P D  
Sbjct: 1492 VDAYSEGLGHGSEFVVRLPVAS-SQARPADTT 1522


>gi|229074991|ref|ZP_04207993.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
 gi|228708048|gb|EEL60219.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
          Length = 312

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K   DE R+       AKS  + ++SH+LRTPL +I+G+  +I  +     +    +
Sbjct: 72  EQLKESIDEERQ----AEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNY--RDEVELR 125

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            YI  I+     L  L+N++ + +R++     L  + I +++++ +  +  +++ QE NI
Sbjct: 126 HYIQVIYGKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANI 185

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E           V AD   + +V  NL+ NA+ +   GG + +T  + S     I I + 
Sbjct: 186 ECRPSFPSQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTA-YESNNMITIDITNY 244

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G  I   ++P +   F +   +  +   G GLGL IA+SI+  H G   + S  ++    
Sbjct: 245 GQPIPSTDLPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKK-TTF 303

Query: 469 IAIL 472
              L
Sbjct: 304 TVKL 307


>gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ATCC 35469]
 gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia fergusonii ATCC 35469]
 gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ECD227]
          Length = 778

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E+ +  K+ F++++SHELRTPLN I+G S ++    +    N   ++Y+  IH S 
Sbjct: 273 QDALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDTDL----NAEQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ +IE  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLSGLQAQQKGLRFVMEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQV+ NL+SNAVKFT   G+V V V +  G   +  + D+G GI + E 
Sbjct: 389 PHQVITDGTRLRQVLWNLISNAVKFTQQ-GKVEVRVRYDKGEMLHFEVADSGIGIPQEEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDISVSSVPGQGSVFTLTVRAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVDDVFEED 519


>gi|149371970|ref|ZP_01891289.1| two-component sensor histidine kinase, phosphate regulation
           [unidentified eubacterium SCB49]
 gi|149355110|gb|EDM43671.1| two-component sensor histidine kinase, phosphate regulation
           [unidentified eubacterium SCB49]
          Length = 287

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 5/268 (1%)

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           L  ++        + D L  ++           +  +     +  FL ++SHEL+TPL  
Sbjct: 19  LESASFGRDQITTDMDTLTKQVRRFTQHKKLEIEALKIRESYRKEFLGNVSHELKTPLFM 78

Query: 267 ILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           + G+ E +     G L++E  ++ Y+   ++  + L  ++ ++  +SR+E G   L +  
Sbjct: 79  VQGYVETLLN---GALDDENVRDKYLERANKGIERLAYIVKDLDMISRLEVGGLTLDKEK 135

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTA 384
           + ++++      +L+++A +KNI +    D P    V AD + ++QV+ NLL N++K+  
Sbjct: 136 VDIVELFNSAFELLEMKAAKKNISLVFDKDYPDPIYVNADVERIQQVLTNLLDNSIKYGK 195

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G   V++         + I DNG GI +  +  +   F +          G GLGL I
Sbjct: 196 KAGTTEVSIEGLMKDKTIVRITDNGVGIEQSYLTRIFERFFRVDKTGSRKVGGSGLGLSI 255

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472
            + I+  H  +  + S+L  G E    L
Sbjct: 256 VKHIIDAHSEKIYVESQLGIGSEFSFTL 283


>gi|117926630|ref|YP_867247.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610386|gb|ABK45841.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 685

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             KS F A+MSHE+RTP+N +LG S+++             ++ +  + ++G  LL LIN
Sbjct: 312 RVKSEFYATMSHEIRTPMNVVLGMSDILLETV----QEPEQRQQLARLQQAGSALLELIN 367

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365
            ILD+SRIE  R  L  + + L  +V + +   QL   EK I +  + +  L+  +  D 
Sbjct: 368 NILDISRIEEKRLTLHMAPMDLRSLVEDLLGFFQLPYHEKGIALVSEWEQGLATHILGDS 427

Query: 366 KGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
             +RQV+ NLL NA+KFT  G   V V           I ++D+G G+   ++  +   F
Sbjct: 428 GRLRQVLTNLLGNALKFTERGQVVVVVRRDPEDATYLRIEVRDSGIGLHADQLLHIFDKF 487

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479
            Q    +     G GLGL I + ++   GG+  + S+   G   I  LP   V  
Sbjct: 488 TQAESGLTRRYGGSGLGLAICKQLVVLMGGRIWVESEDGVGSCFIFTLPYQEVTE 542


>gi|313633174|gb|EFS00057.1| sensor histidine kinase [Listeria seeligeri FSL N1-067]
          Length = 479

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 13/314 (4%)

Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220
           Y  +     + VAL   AI+S   ++       AT           L ++N+       E
Sbjct: 171 YMFYTILLSITVALILSAIISKLQVNRINKLRAATKDVIEGNYQTRLKENNID------E 224

Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280
              L  +     +  + +++  E +   + +F+A +SHE+RTPL  I G +E +  + + 
Sbjct: 225 IGALAVDFNKMTTTLEASQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDIIP 284

Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340
               +     I  I    + L  L+NE LD  +I + +  L ++  +  + +      L 
Sbjct: 285 KTETD---RCIALIDTEARRLTKLVNENLDYEKIRSNKIRLQKTRFNSREFLALIKEQLD 341

Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
             A EK  EI   +D  + +++AD   + QV +N++ N+V+FT   G++ +  G+   + 
Sbjct: 342 YVATEKGNEIKLDVDGEM-NIYADYDRLTQVFINIVKNSVQFT-ENGQITL-AGYQDYKE 398

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIR 459
             ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   + 
Sbjct: 399 SVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTITVS 458

Query: 460 SKLREGVEVIAILP 473
           S+  +G      LP
Sbjct: 459 SEPNKGTCFTIRLP 472


>gi|325981723|ref|YP_004294125.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531242|gb|ADZ25963.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 1222

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 9/295 (3%)

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259
              +     +   +IL    E  +    L+ A        +R  E +  KS F A++SHE
Sbjct: 152 LNKVEARAERMQAEILRRTVEVKEANRSLKSALEELSVANQRLTELDHLKSEFFANVSHE 211

Query: 260 LRTPLNAILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           LRTPL  IL   E  +             +  I  + R+ + L   + ++LD+++ EA  
Sbjct: 212 LRTPLTLILAPLEDRLRQLPNKGSKPTKERREIELMLRNARLLYRHVTDLLDVAKSEANC 271

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378
            E+  ++  +  ++R      +  A +++I +     P    + +D + +++V+LNLLSN
Sbjct: 272 MEVYSASFDIAQLIRMTASYFEQAAHDRDITLNII-SPRTLVIESDSEKLQRVLLNLLSN 330

Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI--KSAEQ 436
           A KFT   G + +++  T      I ++D GPGI       V   F +   A        
Sbjct: 331 AFKFTPDNGCITLSLTSTQND-VRIDVQDTGPGIPMAMRERVFERFTRVENATAANRNYG 389

Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHE 487
           G GLGL I +  +   GG+  +      G     +     P   VL   P    E
Sbjct: 390 GTGLGLAIVKDFVDLLGGKVTLEDSPGGGALFKIVFSLKTPVRSVLLDKPSSLDE 444



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 19/298 (6%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
             +   V       ++   + F    T  + +      + Q   DDL  E  +A+  ++  
Sbjct: 937  WLRWEVRPWLTGNIIGGIVIF----TEDITQQKQAETALQQLNDDL--EKRIAERTAE-- 988

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
                +  N +   F+ S+SH+L+ PL  + G+S ++E +    L++E  + +I +I    
Sbjct: 989  ---LQALNQSLESFVYSVSHDLKAPLRGVEGYSRLLEEDYFDRLDDE-GRLFISNIRTGV 1044

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             H+  LIN++L  SR+E  R +L    + L  ++ + +           IEI        
Sbjct: 1045 THMNELINDLLAYSRME--RCKLQSHELDLTLLIHQALAEYNEEITLHAIEIVADFPS-- 1100

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEI 417
              V+ D +G+   + NLL NA+KF+       +  G   +     + I+DNG G      
Sbjct: 1101 FKVYGDREGLVLTLRNLLGNAIKFSQGTPHPRIEFGACRNKDHVILWIRDNGIGFDMKYN 1160

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              +   F +          G G+GL + +  M   GG+   +S   EG      LP  
Sbjct: 1161 SRIFEIFERLH--RLEDYPGTGIGLALVKKAMQRMGGRVWAQSSPGEGATFSIELPAA 1216


>gi|333008592|gb|EGK28060.1| phosphate regulon sensor kinase PhoR [Shigella flexneri VA-6]
          Length = 431

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEASPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLNIESTVGKGTRFSFVIP 422


>gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 583

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 10/238 (4%)

Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303
             ++ ++ F+ ++SHELRTPL  I G+SE I  +       E  KE    I      +  
Sbjct: 345 RLDIMRNDFINNISHELRTPLVMIQGYSEAILDDV--AETQEEKKEMAKIIGEESIRMNR 402

Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363
           ++NE+LD SR+EAG   L +  + L D   +        +++ NIE+   IDP+L S + 
Sbjct: 403 MVNEMLDSSRMEAGFINLIKLDVQLDDFFNKLFTRFATMSEKNNIEMKLTIDPNLDSYYM 462

Query: 364 DEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIP 418
           DE  M QV +NL++NA++ T        +V + V          I ++DNG GI+E ++P
Sbjct: 463 DEDKMNQVFVNLINNAIRHTSLSNKENKKVEIWVHLEKIMDEILIEVRDNGTGISEEDVP 522

Query: 419 TVLTSFGQGSIAIK---SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            V   F +   +       + G G+GL I ++I+  HGG   ++S + E    +  LP
Sbjct: 523 YVFDRFYKADKSRTVMKGNKTGTGIGLSIVKNIIEAHGGFVEVKSVINEHTTFVVHLP 580


>gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 126/230 (54%), Gaps = 5/230 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F+A++SHEL++PL +I G +E++    +   N    KEY+  I +    L +LI
Sbjct: 367 EKLQREFVANVSHELKSPLTSIKGSAEILLDGII--ENEAQQKEYLKMILKESNSLAHLI 424

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           +E L L+ I++G  EL++  I +  + ++ + +     +++   +  + +  L  ++A+ 
Sbjct: 425 DETLTLAEIDSGGVELNKEKIKVKTLFQD-LEIFFDNIKKEEQSLEFEFEADL-ELYANR 482

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + +RQV++NLL+N+VK++A  G++ +     + +   IS+ DNG GI + E   +   F 
Sbjct: 483 EKIRQVLINLLTNSVKYSAKKGKIKLKALQMAEK-IKISVSDNGIGIPKAEQKNIWERFY 541

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +   A    E+  GLGL I + I+  H G+  ++S++ EG     ILPN 
Sbjct: 542 KIDKARTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGSTFSFILPNK 591


>gi|291551174|emb|CBL27436.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain
           [Ruminococcus torques L2-14]
          Length = 352

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 147/352 (41%), Gaps = 16/352 (4%)

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-----TALSF 199
           L+IA  +  +           +F P   A   Q  +   VL  +   +         L  
Sbjct: 7   LIIAFVVVMIFPVTFALIAMHAFVPGRGAEIQQLYLIAVVLTTAFLILWIYRSVSVPLEK 66

Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASM 256
                 ++ + N+         D++    +  + +    + +AEE+   +      ++++
Sbjct: 67  LQRAARNIKEGNLDFEIKAESNDEIGQLCQDFEEMRLRLKAQAEEKVAFDRENKELISNI 126

Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316
           SH+L+TP+ AI G+ E I          E    YI  I+     +  LINE+   S+I+ 
Sbjct: 127 SHDLKTPITAIKGYVEGIMDGV--ADTPEKMDRYIRTIYNKANEMNLLINELTLYSKIDT 184

Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNL 375
            R   + + IS      +C   L +  + K  E          S V  D + +R+VI N+
Sbjct: 185 NRIPYNFTTISAKGYFADCAEDLSVELESKGAEFTYRNFMEEDSKVIVDPEQLRRVINNI 244

Query: 376 LSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434
           +SN++K+T    +V +T+     G    + + DNG GIA  ++P +   F +   +  S+
Sbjct: 245 VSNSIKYTDK-PKVKITMDVKDVGDFIQVELGDNGKGIAAKDLPNIFDRFYRTDASRNSS 303

Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
           + G G+GL I + I+  HGG+    S+   G  +  ++   R    +P ++ 
Sbjct: 304 KGGSGIGLSIVKKIVEEHGGKIWATSEEGVGTTMYFVI---RKYQEVPVEDE 352


>gi|317132091|ref|YP_004091405.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470070|gb|ADU26674.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 462

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 124/314 (39%), Gaps = 7/314 (2%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
             A +     + + ++      +     + A +   AL     +T      +   L+ + 
Sbjct: 155 MRAEYHFLKLLSLMMAGADAAGILFSMAAGAFISRRALRPIDAVTSAAQAISGSDLTRRV 214

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
             ++   EL       +   +R +     + RF++  SHELRTP+  I G++++I     
Sbjct: 215 TVEETDDELSRLAQTFNHMIERLQRAFERQKRFVSDASHELRTPIAVIQGYTDLI--GRW 272

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G  +    +E +  +    + +  L+  +L L+R   G  +L     +L  ++RE     
Sbjct: 273 GKNDPAVLREAVESVKSETEGMQALVERLLFLARSSDGNMQLRLECFNLRIVLREVADET 332

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +               P    + AD   ++Q++  L  NAVK+T   G V +    +   
Sbjct: 333 RFVFGRS----VDIRIPGTIMLTADRALVKQMLRALTDNAVKYTPEEGSVSIEACQSPDG 388

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              ++++D G GI   ++P V   F +   A   A+ G GLGL I   I+  H G   + 
Sbjct: 389 -VSLTVRDTGIGIPPEDLPHVFDRFYRVDKARSRAQGGSGLGLAIVHGIVEAHHGTIKMA 447

Query: 460 SKLREGVEVIAILP 473
           S    G  V  + P
Sbjct: 448 SVPGHGTSVHIVFP 461


>gi|315652945|ref|ZP_07905911.1| PAS/PAC sensor sensor histidine kinase [Eubacterium saburreum DSM
           3986]
 gi|315484803|gb|EFU75219.1| PAS/PAC sensor sensor histidine kinase [Eubacterium saburreum DSM
           3986]
          Length = 466

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SH+ R+PL +I G+ E I     G +  E  ++Y+  +    + L  L   IL L
Sbjct: 246 FISNVSHDFRSPLTSIKGYLEAILD---GTIPPEMLEKYLNRVIDETKRLTKLTESILSL 302

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
             IE+   +L++++  + +++R      +++   KNI I          V+AD   ++QV
Sbjct: 303 DSIES--VKLNKTSFDINEMIRNTASSFEVQCNSKNITIELIFLNVSQYVFADFSKIQQV 360

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431
           + NL+ NA+KF++    + +       +  ++S+KD G GI++ E   +   F +  ++ 
Sbjct: 361 LYNLIDNAIKFSSQNSSITIQTSIRKEK-IFVSVKDTGIGISKNEQNKIFDRFYKSDLSR 419

Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
              ++G GLGL I + I+  HG    + S +  G E I  LP ++
Sbjct: 420 GKDKKGTGLGLSIVKEILQAHGENIDVISTVGIGTEFIFSLPISK 464


>gi|331681793|ref|ZP_08382426.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
 gi|331080995|gb|EGI52160.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
          Length = 431

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLHIESTVGKGTRFSFVIP 422


>gi|313623682|gb|EFR93834.1| sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 479

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + +AL   AI+S   ++       AT           L ++N        
Sbjct: 170 RYMFYTILLSITIALILSAILSKLQVNRINKLRSATKDVIQGNYKARLKENNFD------ 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        + +++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 224 EIGALAIDFNKMTETLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDII 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 284 PKSETD---RCIALIDTEAKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQL 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK  +I   ID  +  ++AD   + QV +N++ N V+FT   G + +T G    +
Sbjct: 341 DYVATEKGNKITVDIDKDM-YIYADYDRLTQVFINIVKNGVQFT-ENGLITLT-GTRDYK 397

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 398 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISV 457

Query: 459 RSKLREGVEVIAILP 473
            S+  +G      LP
Sbjct: 458 TSEPNKGTTFTIRLP 472


>gi|300949629|ref|ZP_07163615.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1]
 gi|300957870|ref|ZP_07170046.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1]
 gi|300315441|gb|EFJ65225.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1]
 gi|300450960|gb|EFK14580.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1]
          Length = 904

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      +   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   +   +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDSRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G + +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GYIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|229132719|ref|ZP_04261565.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196]
 gi|228650729|gb|EEL06718.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196]
          Length = 483

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 9/312 (2%)

Query: 167 FFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---ILSCQAEKD 222
           FFP  V +L    I++  +L   ++  +   L      T  + K ++        + E  
Sbjct: 171 FFPYFVCSLILGLIITNGILTYFISRSIIKPLHSLKQATERIQKGDLDFQVKPLAKDEIG 230

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           +L    E  +    E+ +   +    +   L+++SH+LRTP+ AI G+ + I+       
Sbjct: 231 ELSLSFEEMRGRLKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGI--AR 288

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   +Y+  I+     +  LI+E+   S+++          + +   + +CI  LQL 
Sbjct: 289 TPEQLDKYLTIIYYKVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLE 348

Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRG 400
            Q+K I +           V  D + +R+VI N++ N+VK+     G + + +  +    
Sbjct: 349 LQDKGIAVRWDAQKDTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESID-Y 407

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             I IKDNG GI E  +P +   F +   +  S   G GLGL IA  I+  HGG   + S
Sbjct: 408 VTIYIKDNGVGIEEKALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVES 467

Query: 461 KLREGVEVIAIL 472
           K  +G  +   L
Sbjct: 468 KKGKGTTLAFTL 479


>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
 gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
          Length = 1342

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 6/230 (2%)

Query: 245  ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
             N +K RF  ++SHE RTPL  I+   E++                + +IHR+   +  L
Sbjct: 819  LNQSKLRFFTNISHEFRTPLTLIVSQLEMLMER---NDIQPLVYNKLVNIHRNTLRMKRL 875

Query: 305  INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
            I E+LD  + E G  +   S   +   + E  +  +  A+ K I +          VW D
Sbjct: 876  ITELLDFRKQEQGFEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFD 935

Query: 365  EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
               + +VI NLLSNA K+T++GG V ++V         I I D G GIAE  +  +   F
Sbjct: 936  VVQLEKVIYNLLSNAFKYTSLGGTVSLSV-QEYENSVVILISDTGIGIAEKSLDKIFDRF 994

Query: 425  GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             Q        ++G G+GL +A+SI+  H G+  +RS   +G   +  LP 
Sbjct: 995  YQVDS--TDNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1042


>gi|17232801|ref|NP_489349.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134448|dbj|BAB77008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 935

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/392 (26%), Positives = 156/392 (39%), Gaps = 28/392 (7%)

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           +      +  +    +   I +             +                     A  
Sbjct: 322 ARTGKANLRGFSGLFMASWIILWSVIGSSGSWLLASARSGRRIPGGKILWTTTSISGAFL 381

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
                  +     PV   L+             ++ +  T       +     +  +   
Sbjct: 382 GGGYGMFLHGVLIPVTPPLAA----------FIVSVIATTNAYKQQKLEEANQQLEIANS 431

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275
                   L  +++       E ++ A+  N AKS FLA+MSHELRTPLN ILGF++V+E
Sbjct: 432 QLLDYSKTLEIKVQERTHELLEAKQAADAANQAKSEFLANMSHELRTPLNGILGFAQVLE 491

Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335
              + P   E   E +  IH+ G HLL LIN+ILDLS+IEA + EL  + + L   +   
Sbjct: 492 ---VSPNLREKDLEGVNIIHQCGSHLLLLINDILDLSKIEARKLELVVANVHLPTFLHGV 548

Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394
             +  +RA +K I     +   L +V   DEK +RQV++NLL NAVKFT  GG V   V 
Sbjct: 549 SEICSIRAAQKGIAFKVSMGDRLPTVMEVDEKRLRQVLINLLGNAVKFTDSGG-VTFKVE 607

Query: 395 WTSGR----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
               +               I+D G G++  ++  +  +F Q         +G GLGL I
Sbjct: 608 LLDTQDQDNQQSSVAKIRFQIEDTGVGMSPEQLEKIFLAFEQVGDCR-RQSEGTGLGLAI 666

Query: 445 AQSIMANHGGQFLIRSKLREGVEVI--AILPN 474
           +Q I    G Q  ++S+L EG        LP 
Sbjct: 667 SQRIAELMGSQIQVQSRLGEGSIFWLDVTLPV 698


>gi|325121839|gb|ADY81362.1| putative two-component sensor kinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1154

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/320 (29%), Positives = 164/320 (51%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A +   + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 607 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 667 SKDLQDARISAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 783

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + Q+++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 784 YEIGDNLPHYVRTDKKRLEQILINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLVDLLGGQLSVTSQLN 894

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 895 QGSQFKIKFYLPSKEVVHPI 914


>gi|16800611|ref|NP_470879.1| hypothetical protein lin1543 [Listeria innocua Clip11262]
 gi|16414016|emb|CAC96774.1| lin1543 [Listeria innocua Clip11262]
          Length = 479

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + +AL   AI+S   ++       AT           L ++N        
Sbjct: 170 RYMFYTILLSITIALILSAILSKLQVNRINKLRSATKDVIQGNYKARLKENNFD------ 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        + +++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 224 EIGALAIDFNKMTETLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDII 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 284 PKSETD---RCIALIDTEAKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQL 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK  +I   ID  +  ++AD   + QV +N++ N V+FT   G + +T G    +
Sbjct: 341 DYVATEKGNKITVDIDKDM-YIYADYDRLTQVFINIVKNGVQFT-ENGLITLT-GTQDYK 397

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 398 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISV 457

Query: 459 RSKLREGVEVIAILP 473
            S+  +G      LP
Sbjct: 458 TSEPNKGTTFTIRLP 472


>gi|303258861|ref|ZP_07344840.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|303261545|ref|ZP_07347492.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264215|ref|ZP_07350135.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
 gi|303266154|ref|ZP_07352047.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|303268119|ref|ZP_07353919.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302637125|gb|EFL67613.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639804|gb|EFL70260.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|302642336|gb|EFL72683.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302644324|gb|EFL74578.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|302646027|gb|EFL76254.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
          Length = 449

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           SRI+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDCFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 118/262 (45%), Gaps = 9/262 (3%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I     A+    + +  AE    AKS FLA+MSHE+RTP+N +LG   ++    +     
Sbjct: 556 ITAQRNAQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSKLDS--- 612

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
                 +     S + LL+LIN+ILD S+++AG+ EL      L   + E    + LRAQ
Sbjct: 613 -EQLRKVKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMALRAQ 671

Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400
           EK++E+         S V  D   +RQ++ NL+SNA+KFTA  G + +            
Sbjct: 672 EKDLELVLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAE-GEIVIRCQLQPEGDHLL 730

Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460
             +S+ D G GI   +I  +   F Q   +      G GLGL I + +     G   + S
Sbjct: 731 LTVSVSDTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITVHS 790

Query: 461 KLREGVEVIAILPNTRVLNFIP 482
           +  EG      +   R     P
Sbjct: 791 EQGEGSCFEFCVRLQRSELTQP 812


>gi|332653532|ref|ZP_08419277.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
 gi|332518678|gb|EGJ48281.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
          Length = 551

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F A++SHEL+TPL +I G +E+++    G +  E  + +  DI++  Q L+
Sbjct: 325 EQREDLRREFTANVSHELKTPLTSISGIAEIMQS---GMVKAEDVQGFASDIYQEAQRLI 381

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ +I+ LS+++ G   +    + L  +  E    L+  AQ+ ++ I          V 
Sbjct: 382 ALVEDIIRLSQLDEGAVNMEREDVDLFQLSLEVTKRLESAAQKNDVTIKTMGRS--VQVH 439

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
              + + ++I NL  NA+K+   GG V VTVG   G    +S++DNG GI   +   V  
Sbjct: 440 GVRRVLDEMIYNLCDNAIKYNRRGGTVAVTVGPVEGG-VEVSVEDNGIGIPAEDQNRVFE 498

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            F +   +      G GLGL I +   A H GQ  + S   +G  V  +LP
Sbjct: 499 RFYRVDKSHSKDISGTGLGLSIVKHGAALHDGQIRLESTPGKGTTVTLLLP 549


>gi|225027576|ref|ZP_03716768.1| hypothetical protein EUBHAL_01833 [Eubacterium hallii DSM 3353]
 gi|224955092|gb|EEG36301.1| hypothetical protein EUBHAL_01833 [Eubacterium hallii DSM 3353]
          Length = 454

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 137/299 (45%), Gaps = 19/299 (6%)

Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------- 240
           L G+       F+ +   L ++N +    Q E D + A  +      +  R+        
Sbjct: 158 LVGIFFIITLIFSVLVALLIRNNFR--RMQNELDIIAAGHQEEGLGQENFREFYNLSSSF 215

Query: 241 -----RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295
                R +E    +  F++++SHEL+TP+ ++   ++ + ++   P+  E Y+E++ DI 
Sbjct: 216 NKIINRYKELENTRQEFVSNVSHELKTPITSMKILADSLLMQPDVPV--ELYEEFMNDIV 273

Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355
                   +I ++L L +++  + +L+ +++ + D++   +  +   A+++ I+I  +  
Sbjct: 274 HEIDRENQIITDLLTLVKMDKTQADLNITSVKINDLLEVLLKRISPIAEKRGIKIRLETM 333

Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415
             + +   DE  +     NL+ NAVK+    G+V V++     +  YI +KD G GI E 
Sbjct: 334 REVVA-EVDEVKLSLACNNLIENAVKYNHDDGKVDVSLNA-DHKFFYIRVKDTGCGIPED 391

Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
               +   F +   A      G GLGL I ++++  H G   + SK  EG   I  +P 
Sbjct: 392 CQEQIFERFYRVDKARSRETGGTGLGLAITRNVVLMHKGSIRVHSKEGEGATFIIRIPL 450


>gi|146284067|ref|YP_001174220.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145572272|gb|ABP81378.1| probable two-component sensor [Pseudomonas stutzeri A1501]
          Length = 666

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/470 (21%), Positives = 169/470 (35%), Gaps = 21/470 (4%)

Query: 38  ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS-------LITLAVYAANLSLG 90
           + +++    +      L++              +  +W          T  +  A    G
Sbjct: 201 LFIYISIRDQSYLFYILYIAAFGLYQVSVNGAGVQFLWPDRPWWANAATPLLIGATGLFG 260

Query: 91  KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150
                S ++  E   W   LL   I   +   +L L      +    T       L   +
Sbjct: 261 CLFTRSFLRTAEHSRWMDRLLRLIIGFSVVVMVLALTTDYGLSLRLATALALLFTLAVFA 320

Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210
              L+                  L    I ++ VL       L    S        +  S
Sbjct: 321 AGILAWLRGMRVARYFVIAWSALLVGGQINTLMVLGHLPHNFLTMYASQLGAALEVVLLS 380

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
                   A KD+    LE A+S  ++  +   E N  K  FL+++SHELRTP+  ++G 
Sbjct: 381 MALADRINALKDERAKILENARSDLEQLNRELAESNRLKDEFLSNISHELRTPMMGVMGA 440

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
            E++          E  ++Y      S + ++ L+N IL LS + AG+  L     SL D
Sbjct: 441 LELL----PASETPEELQQYQHIATGSARDMMRLVNNILVLSELRAGKLRLQAQRFSLRD 496

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389
                      +A+ K +    + D  L   V+ D +   Q I +LL NAVKFT+  G V
Sbjct: 497 TAVRLEQQFGPQARAKGLAFDLEFDGKLPDRVYGDGEKFEQSICHLLDNAVKFTSR-GAV 555

Query: 390 HVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
            +  G    + Q    + + D+G G ++ +   +   F Q   ++     G+G+GL I++
Sbjct: 556 TLRFGGAVEQRQVQLEVEVIDSGIGFSDADQAYLYHQFRQVDGSMTRRYGGLGIGLAISR 615

Query: 447 SIMANHGGQFLIRSKLREGVEV--IAILPN---TRVLNFIPEDNHESTQY 491
            ++   GGQ   +S+   G         P     ++L   P  N  S   
Sbjct: 616 GLIEVFGGQLSQQSRPGLGSRFCIRVRFPLHGPEQMLASQPNGNPPSAPI 665


>gi|303327577|ref|ZP_07358018.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862517|gb|EFL85450.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 780

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
           ++ A  E+ +   ++  + A   + AK+ FL+ MSH++RTPLNAILG +++       P 
Sbjct: 250 EIRARQELQQKALEDACRAARAADRAKTDFLSQMSHDIRTPLNAILGMADIAGTRLDDPR 309

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                 E +  I  SG+HLLNLINE+LD+S+IE+G+  L+   + L ++VR  + +    
Sbjct: 310 GAG---ECLKKIQASGRHLLNLINEVLDMSKIESGQMRLAAEDMELAELVRNVLDVCGSL 366

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398
            +EK   +  + + +   V  D   ++Q+  NLLSNA K+T  GG +  ++         
Sbjct: 367 LKEKGHVLTVRANVAHERVRGDSGRLQQLFTNLLSNAAKYTPAGGSIAFSIDELPSLNTD 426

Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                  I DNG G++E  +  +   F +         QG GLGL I++SI+   GG   
Sbjct: 427 VGLFECVIADNGIGMSEDFVKHLFEPFKRADDPRICKIQGTGLGLVISRSIVRLMGGGIK 486

Query: 458 IRSKLREGVEVIAILPNTRVLN 479
           + S+  EG   I  LP      
Sbjct: 487 VESRPEEGSRFIVSLPLRLAEE 508


>gi|89896745|ref|YP_520232.1| hypothetical protein DSY3999 [Desulfitobacterium hafniense Y51]
 gi|89336193|dbj|BAE85788.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 463

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 142/369 (38%), Gaps = 33/369 (8%)

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165
           W+   L+     G+ + +  +  P                    +  +  + +       
Sbjct: 119 WKNKTLMISGPNGV-FAVAEVRYPARARVLNP------------ADQSFISAIYQSLFLA 165

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
               +++ +     +S  +                T     + + ++        KD++ 
Sbjct: 166 GALALIIGIILSYWISRRLTSPLQG---------LTKAVQRVGEGSLDEQVPVTTKDEVG 216

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   +++  +K+       + +F A ++HELRTPL +I  + E  +   +      
Sbjct: 217 QLATAFNGMAENLKKQ----ERLRKQFTADIAHELRTPLTSIRSYIEAFQDGVL-----P 267

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
             KE +  I+   + L  L +++ DL+  E G      + ++L  ++ + + ML    QE
Sbjct: 268 ANKENLAIINEEIERLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQE 327

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           K I +      S   +  DE  + ++  NLL NA KFT   G++ V +     +   I+I
Sbjct: 328 KGISLAWHKPESTL-IEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRH-QEALITI 385

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D+G GI E ++P +   F +   +      G G+GL +AQ I   H G   + S   +G
Sbjct: 386 SDSGIGIPEEDLPFIFERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKG 445

Query: 466 VEVIAILPN 474
              + +LP 
Sbjct: 446 SRFMLLLPL 454


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 5/245 (2%)

Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304
            N  K  FLA ++HELR PL  I    E++    +   + E  +E I  + +  + L+ L
Sbjct: 401 ANQRKDEFLAMLAHELRNPLAPIRTGIELLR---IAADDPEVLQETIEVMDQQSRQLVTL 457

Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364
           ++++LD+SRI  G+ +L    I+L D++ + +   +    + N E   ++      V  D
Sbjct: 458 VDDLLDVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELPDCPLQVQGD 517

Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
            + + QV+ NLL+NA K+T  GGRV + V         I+I+D G GI E     +   F
Sbjct: 518 SRRLVQVVSNLLNNAAKYTPRGGRVDLIVQPEP-NRIGIAIRDTGIGIPEHMRERIFELF 576

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPE 483
            Q          G+G+GL + ++++  H G+  + S    +G     +LPN    +    
Sbjct: 577 TQVDERQHDRYSGLGIGLTLVRTLVHLHNGEIQVHSDGQGQGSTFTVLLPNAGSNSSPDP 636

Query: 484 DNHES 488
              E+
Sbjct: 637 AAIEN 641


>gi|296111035|ref|YP_003621416.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832566|gb|ADG40447.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 619

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 114/253 (45%), Gaps = 14/253 (5%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           +  +  +  F++++SHELRTPL ++  + + +    +   + +  + ++G +    Q ++
Sbjct: 368 QRIDSERRMFVSNVSHELRTPLTSVRSYVDALAEGAI--NDPDMAQNFLGVVQDETQRMI 425

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK---------NIEIFQK 353
            +IN++L LSR++ G  E+    I+L  +    +    +  +           +  I ++
Sbjct: 426 RMINDLLALSRLDQGTMEVKLEVINLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIQRE 485

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
                  V  D     QV+ N+++NAVK++  GG +   +  T      +SI D G GI 
Sbjct: 486 FTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTK-TRAILSISDQGLGIP 544

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++  +   F +   +   A+ G GLGL I++ ++    G+  + S   +G      L 
Sbjct: 545 RKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL- 603

Query: 474 NTRVLNFIPEDNH 486
              V + + E+  
Sbjct: 604 -AYVDDVVIEEED 615


>gi|166711950|ref|ZP_02243157.1| RpfC [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 725

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 170/454 (37%), Gaps = 53/454 (11%)

Query: 29  SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW----FTQNPIFPMWSLITLAVYA 84
           S + + ++ ++   ++    + I  +   L  +   W       +     W    L    
Sbjct: 3   SPLTWLKQRLSGRADTEHAQNLIRIIITTLFISYLGWRYHHTHGDTPMATWL--ILVGEL 60

Query: 85  ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144
                    +    ++          L+G +    C   +  ++     P          
Sbjct: 61  VVSLALMVAILLRPQVSHTRR-----LIGMLLDYTCTGAIMAIQ---GEPASPLYAVCMW 112

Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204
           + I   +   SN++       S   +   L +    +   L   L   L     +F  + 
Sbjct: 113 VTIGNGLRYGSNYLRAATAMASLSFLSAILMSPYWKANPYLSWGLLLGLIAVPLYFDSLL 172

Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264
             + +                              + A   N AKSRFLA+MSHE RTPL
Sbjct: 173 RAMTR----------------------------AVREARHANQAKSRFLANMSHEFRTPL 204

Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324
           N + G +EV+    +        KE +  I  S + LL+L+ E+LD+S IEAG+  +   
Sbjct: 205 NGLSGMTEVLATTRLDV----EQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRR 260

Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383
             SL D++    ++LQ +A+ + ++   ++   +  +   D   +RQV+LNLL NAVKFT
Sbjct: 261 DFSLRDLIGSVNMILQPQARTRGLDYGTEVATDVPDLLKGDTGHLRQVLLNLLGNAVKFT 320

Query: 384 AIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438
              G V + V   SG G         ++D+G G+     P +  +F Q  + +    +G 
Sbjct: 321 -DHGHVRLRVARLSGNGADTVRLRFDVEDSGIGVPMDMRPRMFEAFEQADVGLSRRYEGT 379

Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           GLG  IA+ ++   GG          G      L
Sbjct: 380 GLGTTIAKGLIEAMGGAIGYTPNRPSGSVFWFEL 413


>gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1020

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 11/370 (2%)

Query: 109 WLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167
             LV     G        +       PE++++ + A  L  L     +  +L     +  
Sbjct: 204 LYLVDAPVQGARLAGCAGIAAGSPAAPEFISLQEGAVPLWPLDEVRRTGRLLTVTGLVER 263

Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227
             V ++           L + L        S F  +     ++  +     AE+      
Sbjct: 264 LGVALSGGPWPEPVHSALVVPLMVGSDGHASGFLILGTSPRRAIDEEYKQFAERVAANVS 323

Query: 228 LEVAKSLSDET-RKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
             V ++++ E  RKRAE     + AK+ F +++SHE RTPL  ++G +E    + +    
Sbjct: 324 SVVGRAIAYEAERKRAEALAEIDRAKTAFFSNVSHEFRTPLTLMIGPTE----DALASPE 379

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
                  +  ++R+   LL L+N +LD SRIEAGR + + + + L  +  E     +   
Sbjct: 380 RALRGSELERVYRNEVRLLRLVNTLLDFSRIEAGRVQATYAPVDLSRLTGELASTFRSAV 439

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           +   + +  ++ P    ++ D     +++LNLLSNA+KFT   G + V + W  G    +
Sbjct: 440 ERAGLRLRLELPPLPERIYVDHDMWEKIVLNLLSNALKFTFE-GEIAVVLRWL-GTHVEL 497

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           +I+D G GI  GE+P +   F +   A     +G G+GL + Q ++  HGG     S L 
Sbjct: 498 TIQDTGTGIPAGELPRIFDRFHRVQGARSRTHEGSGIGLSLVQELVKFHGGTIRAESTLG 557

Query: 464 EGVEVIAILP 473
           +G   I  LP
Sbjct: 558 QGTAFILSLP 567



 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 18/367 (4%)

Query: 114  QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173
               +   WT+   V  G    +         +L  + +  L  F L  A+        + 
Sbjct: 649  ARLLSPRWTV-EAVADGAAALDVALARPPDLVLTDVMMPRLDGFGLLRALRSQASTRAIP 707

Query: 174  LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
            +   +  +     +   GM A A  +                  +  +  +    EV + 
Sbjct: 708  VIMLSARAGEEARV--EGMEAGADDYLVKPFSARELLARVSARLEISRMRMANAAEVLRL 765

Query: 234  LSDETRK------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287
              D  R+      + EE N     F  S+SH+LR PL  ILGF+ ++E  + G L+ E  
Sbjct: 766  NQDLERRVRERTAQLEESNRELESFSYSVSHDLRAPLRHILGFAGLLEKSSRGKLD-EKS 824

Query: 288  KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347
            + ++  I  + Q    L++++L  SR+  GR E+ +  + L  +V E    L   A+ + 
Sbjct: 825  QSHLRVIAEAAQKGGQLVDDLLAFSRL--GRAEVKKRPVELRKLVEEVRAELVTEAEGRK 882

Query: 348  IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIK 406
            +         L  V AD   +R V+ NLLSNA+K+T       + V    +     + IK
Sbjct: 883  VSWHV---APLPQVQADPSLLRLVLKNLLSNALKYTRPRAEAAIDVSTRQNDGAVEVCIK 939

Query: 407  DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
            DNG G     +  +   F +         +G G+GL   + I+  HGG+      + EG 
Sbjct: 940  DNGVGFEMQYVGKLFGVFQRLHTPE--QFEGTGIGLANVRRIILRHGGRVWAEGAVGEGA 997

Query: 467  EVIAILP 473
                 LP
Sbjct: 998  AFHFTLP 1004


>gi|319902084|ref|YP_004161812.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319417115|gb|ADV44226.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 628

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           +AE     K+ FL++MSHE+RTPLNAI+GFS ++  E     ++E+ KE+   I  +   
Sbjct: 389 KAERAIQRKNMFLSNMSHEVRTPLNAIVGFSAILTDED-ETFDDESRKEFCEIIKVNSFQ 447

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL LIN+ILD S  E         +   + +  E +  +    + + +EI    D S+ S
Sbjct: 448 LLKLINDILDFSDFENDNITFHIQSYDAVKLCHETVETVIASHKLEGVEIRFDTDLSVLS 507

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +  D+  +RQV++NLL NA KFT   G + + +        + ++ D G GI   +   +
Sbjct: 508 LETDDGRLRQVLINLLVNATKFTKQ-GSIVLKLDMADNDTAFFTVTDTGCGIPMEKQQLI 566

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
              F +         QG GLGL I Q I+    G+  + S+  +G       P  
Sbjct: 567 FERFEKL----NDFVQGSGLGLSICQLIVKYMNGRLWVDSEYTQGARFCFTHPMK 617


>gi|256820653|ref|YP_003141932.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
 gi|256582236|gb|ACU93371.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
          Length = 828

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 125/255 (49%), Gaps = 20/255 (7%)

Query: 239 RKRAEEENLAKS--------RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
           R++ E  N  KS        + ++ +SH+LRTPL++I+G+SE++  + +    ++  K Y
Sbjct: 313 RRKLETANR-KSYNLLKNREQLISMVSHDLRTPLSSIVGYSELLSKQKI----SDKGKNY 367

Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350
           +  I  S +++  L++E+LD +RIEAG+  + +   +  +I+ E    ++   + K I +
Sbjct: 368 LSHIKYSSEYISKLVDELLDYTRIEAGKISVEKVPFNTAEIIDEVANNVKSAYKTKEINL 427

Query: 351 FQKIDPSLSSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----IS 404
                 +++++   +D   ++Q++ NL+SNA KFT   G VH+               I+
Sbjct: 428 TFTFSETVNNLNFSSDAYRVKQILYNLISNAFKFTER-GNVHIQADARPLGNDVYEIGIA 486

Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           + D G GI + +   +   F Q +  I     G GLGL I+Q +     G+  + S   +
Sbjct: 487 VTDTGIGIKKEQQQHIFDEFTQANDEISKRYGGSGLGLHISQKLAHLLRGKIYLESNEGK 546

Query: 465 GVEVIAILPNTRVLN 479
           G          +V+ 
Sbjct: 547 GSTFTLRFLAEKVVE 561


>gi|207721451|ref|YP_002251892.1| two-component regulatory protein [Ralstonia solanacearum MolK2]
 gi|206586611|emb|CAQ17198.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 544

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 171/420 (40%), Gaps = 19/420 (4%)

Query: 76  SLITLAVYAANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134
            ++ L         G +   + + +      W   + +     G+ W     +   + + 
Sbjct: 3   IMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAGLYLVSPSL 62

Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGML 193
           E+ ++     ++I ++  A+ +     +  L     ++A              + + G+L
Sbjct: 63  EFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEHGLYVRGVL 120

Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253
              ++F      ++  + V+ +  + E   L      A+   DE ++RA   +  KSRFL
Sbjct: 121 LFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFL 173

Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313
           A+ SH+LR P++A++   E +         +ET    +  +    Q +  L   +LDLS+
Sbjct: 174 AAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLFRSLLDLSK 229

Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373
           +E+ +   +   + L +++ E +      A+ K + + Q+I P      A+   +R+ + 
Sbjct: 230 LESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEPVLLRRALF 289

Query: 374 NLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
           NLL NA+++T+ GG  V + V     +   I + D G GIA      + +S+ Q     +
Sbjct: 290 NLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSYYQVENPER 346

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
              QG+GLGL I +  +    G F +RS    G      L         P      ++ K
Sbjct: 347 DPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLAAQPRSEQK 406


>gi|257058393|ref|YP_003136281.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588559|gb|ACU99445.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 364

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 12/367 (3%)

Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166
               L     + +   LL+ +     +   L + +   L      +  +        F +
Sbjct: 6   LRTRLFLSHLLVMVVGLLSFIIIAKISSPRLFVLRLEQLEKRGFFTVRTARTYLVKGFET 65

Query: 167 FFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
            +      S     S   +L   ++  +   L+    IT  L + N++    +++  +L 
Sbjct: 66  AWNNSAIWSVIFGGSAAGLLSYWVSCRIMQPLNQMKEITEKLAEGNLEERMPESDIPELN 125

Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285
                   +++      E     +   ++ M+HELRTPL  + G+ E +   ++ P    
Sbjct: 126 QLGMSFNYMAN----SLENVEKRRRELVSDMTHELRTPLTVVRGYLEELADNSIEPSP-- 179

Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345
              E    + +  + L  LI ++ +LS+ EAG   ++   I+LI I+   +     +  +
Sbjct: 180 ---ELYLKLVKETRRLERLIQDLQELSKAEAGYLSITLRPINLIPILIALLEKFSDQILD 236

Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405
           +   +      SL  V AD   + Q+++NL+ NA+++T   G + +   W      +IS+
Sbjct: 237 EGPLLKLDYPKSLPPVLADSDRIEQILVNLIGNAIRYTET-GTITIKA-WRDRHRVFISV 294

Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465
            D G GI   ++P V   F +   +      G G+GL I + ++   GG   + S+L +G
Sbjct: 295 IDTGIGIKPEDLPFVFERFWRADKSRSRYSGGTGIGLAITRRLVELQGGNIEVSSQLGKG 354

Query: 466 VEVIAIL 472
                 L
Sbjct: 355 STFTFYL 361


>gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 778

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    I     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|167038190|ref|YP_001665768.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039101|ref|YP_001662086.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|256750938|ref|ZP_05491822.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913309|ref|ZP_07130626.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307723677|ref|YP_003903428.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|320116599|ref|YP_004186758.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853341|gb|ABY91750.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166857024|gb|ABY95432.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750273|gb|EEU63293.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889994|gb|EFK85139.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307580738|gb|ADN54137.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|319929690|gb|ADV80375.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 466

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 5/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
           +  + RF++  SHEL+TPL ++    E +        + + YKE + D+      +  L+
Sbjct: 239 DEERKRFVSDASHELKTPLASVKALIESLINSK--NQDIKFYKEILKDVDGELNRMTRLV 296

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N++L+L+R++  +  +      + +I+ + I  L   A+ K I +  K + ++     D 
Sbjct: 297 NDLLELARMDKIK-AVKVRKSEISEIILDVIESLLPLAKTKEINLEFKGENNV-FAEVDP 354

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
               +++ N++ N +K+T  GG V V +        Y++I DNG GI+E  +P +   F 
Sbjct: 355 DRFYRMVYNIVENGIKYTHDGGNVIVGLE-EDENNIYLTIADNGMGISEETLPKIFDRFT 413

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +G  A      G GLGL IA+ I+  H G+  + SK+ EG      LP  +
Sbjct: 414 RGDTARSKKSGGFGLGLAIAKEIIDIHEGKVTVESKVGEGTVFRITLPKKK 464


>gi|89074344|ref|ZP_01160826.1| probable sensor/response regulator hybrid [Photobacterium sp.
           SKA34]
 gi|89049831|gb|EAR55372.1| probable sensor/response regulator hybrid [Photobacterium sp.
           SKA34]
          Length = 460

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 144/299 (48%), Gaps = 31/299 (10%)

Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLA 254
           A    + +   L K++  I + +++   L  +  E A  LS+  + +AE        F+A
Sbjct: 21  AEGEVSLLASELKKADECIYNTESKLQGLNRKLREQANDLSEAIKIKAE--------FMA 72

Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314
           +MSHE+RTP+N +LGF + +E   +    ++  +  IG I  S   LL +INEILD S++
Sbjct: 73  NMSHEIRTPMNGVLGFVQCLEERNL----DQESQRQIGYIKESAYSLLVIINEILDYSKL 128

Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373
           E+G  EL  ++ +L   V  C      +A+ K I++  ++   L+ S  ADE  +RQ+++
Sbjct: 129 ESGNVELHMTSFNLKPFVHSCATPFIHQAKIKKIQLSTELGEGLADSYTADEGRLRQILI 188

Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG----------------RGQYISIKDNGPGIAEGEI 417
           NL+ NAVKFT   G V + V                     +     +KD G GIAE ++
Sbjct: 189 NLIGNAVKFTHT-GSVKLVVEKRDAPEQQCEELKKYNDKHIQWLRFKVKDTGIGIAEEKL 247

Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +  S+ Q   +I     G GLGL I+ S+      +  + S +  G E    +P  +
Sbjct: 248 AFIFDSYTQADGSISRQFGGTGLGLSISNSLCRLMSAKLQVESIIGNGTEFWFDIPLKQ 306


>gi|313906135|ref|ZP_07839484.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
 gi|313469022|gb|EFR64375.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
          Length = 367

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 18/365 (4%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
                + I      +  +S+   ++  L  AV  +   +++ L+   I     +   +  
Sbjct: 16  AFLAVIIIPVFFGSVFLISMLTNASPQLKSAVLETIVMILIILTVTCIAVGLWIYRGVMN 75

Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLAK 249
            +    +    I       +V     + E +DL  + E  +      ++ AEE   + +K
Sbjct: 76  PIRELQTAAQNIRDGNLNYSVSGRGVR-EINDLCDDFEEMRIRL---KESAEEKISSDSK 131

Query: 250 S-RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308
           S   ++++SH+L+TP+  I G++E I          E  K+YI  I+     +  LI+E+
Sbjct: 132 SKELISNISHDLKTPVTTIKGYAEGIIDGV--AATPEKQKKYIRTIYNKAVEIERLIDEL 189

Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKG 367
              S+IEA R   +   I + D   +C+  L L  + +NI++ +         + AD + 
Sbjct: 190 TTYSKIEANRIPYNFQKIHVRDYFIDCVDELNLELESQNIQLNYFNYLTGEPMIIADPEQ 249

Query: 368 MRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           MR+VI N++ N+VK+     G +++ +         I I+DNG GI++ +I  V   F +
Sbjct: 250 MRRVINNIVGNSVKYMDKPAGIINIRL-RDVDEFIQIEIEDNGKGISQKDISRVFDRFYR 308

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486
              A  S   G G+GL I + I+ +H G+    S+   G  +  +L   R    +  +N 
Sbjct: 309 SDTARTSR-GGSGIGLSIVKKIVEDHEGKVWATSREGVGTVIYFVL---RKYQEV--ENE 362

Query: 487 ESTQY 491
           ++T +
Sbjct: 363 QNTDH 367


>gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 721

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 18/254 (7%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FLA+MSHE+RTPLN ++G  ++++L       +E   ++I   + S + LL L+N ILD+
Sbjct: 345 FLANMSHEIRTPLNGVMGMLQLLKLTGC----DEERNDFIKLAYDSSERLLQLLNNILDI 400

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370
           SRIEAGR  + +   S +++++E +++ Q  A+ KN+ +    D  L   V  D   +RQ
Sbjct: 401 SRIEAGRTVMVQEPFSPLELLQEPVLLFQGMAKAKNVTMAFSADDGLPEQVTGDVPKIRQ 460

Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424
           V+ NL+ NAVKFT   G+V + V +      +      +++ D G GI+   +P +   F
Sbjct: 461 VLFNLVGNAVKFT-QNGQVRLAVAYAGSPASSDKATLVVTVADTGKGISAELLPELFQPF 519

Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----AILPNTR--VL 478
            QG  + K    G GLGL I + ++   GG   + S   EG  V       LP  R   L
Sbjct: 520 TQGDSSFKKQYAGTGLGLSIVKRLVCLMGGALCLESVEGEGTTVHLSVPVTLPVPREADL 579

Query: 479 NFIPEDNHESTQYK 492
              P+      +Y+
Sbjct: 580 PRAPDAEVAPRRYR 593


>gi|229828449|ref|ZP_04454518.1| hypothetical protein GCWU000342_00510 [Shuttleworthia satelles DSM
           14600]
 gi|229793043|gb|EEP29157.1| hypothetical protein GCWU000342_00510 [Shuttleworthia satelles DSM
           14600]
          Length = 499

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 144/317 (45%), Gaps = 9/317 (2%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           + V      ++   +L    A      +     +   L K+     S   +  D     E
Sbjct: 175 MTVPGIIGFVILGFILLGLAAWTAEHTIRPLKTMEEALDKTKNGSASSGLKDLDYAEAEE 234

Query: 230 VAKSLSD-ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           +A   +D   R ++ E +     F++++SHEL+TPL ++   ++ I      PL  E Y+
Sbjct: 235 LAGHFNDFLGRMQSVEASR--QEFVSNVSHELKTPLTSMKVLADSINSMEGAPL--ELYQ 290

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
           E++ D+         +IN++L L R+      ++ +++++ +++   +  ++  A  + +
Sbjct: 291 EFMQDMSHEIDRETKIINDLLSLVRMNKTGISMNIASVNMNELIESILHRVRPIADRQGV 350

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E+  +          DE      I NL+ NAVK+   GG VHV++     +  +++++DN
Sbjct: 351 ELVLE-SFRPVFCEIDETKFSLAITNLVENAVKYNNPGGWVHVSLNA-DHQYCFVTVEDN 408

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G GI +  +  +   F +   +      G GLGL I Q+ +  H G+  + S+L +G   
Sbjct: 409 GMGIPQDSLDRIFERFYRVDKSHSREIGGTGLGLAITQNAIRMHHGEIRVASELGQGTTF 468

Query: 469 IAILPNTRVLNFIPEDN 485
              +P T +++  PE++
Sbjct: 469 DVRIPLTYIVD--PEED 483


>gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 778

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V   +  G   +  ++D+G GI++ E 
Sbjct: 389 PHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRARYDEGDMLHFEVEDSGIGISQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  N GG   + S   +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFDED 519


>gi|159899539|ref|YP_001545786.1| histidine kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892578|gb|ABX05658.1| histidine kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 631

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 4/243 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            AE  + +KS F++ MSHELRTPLNAI+G+SE++  + +   N +   +    I  +G+H
Sbjct: 388 AAEVFSRSKSTFMSMMSHELRTPLNAIIGYSELLIDD-LSATNQQQSTDDARQIRSAGRH 446

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           LL++I  IL +S +E+G   +    + L  +     + L+ + Q+++ ++  KIDP+ S 
Sbjct: 447 LLHVIETILQVSNLESGASNVHYDDVDLEMLTNSLELSLRTQFQKRSNQLEIKIDPNASW 506

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQYISIKDNGPGIAEGEIP 418
           V++D   +RQ+I  LL+NA KFT   G+V +T+             + D G GI    +P
Sbjct: 507 VYSDSSKVRQIIFQLLNNANKFT-DHGQVRLTIAPDSLDPEMLAFEVCDTGIGIDHEHLP 565

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
            +   F Q   +      G G+GL + + +    GG   + S+   G      +P   V+
Sbjct: 566 LLFAEFSQLDASSTRRYDGTGMGLALCRHLARLLGGDIRVWSEPGIGSTFTLAIPRQSVM 625

Query: 479 NFI 481
             +
Sbjct: 626 TPV 628


>gi|22126271|ref|NP_669694.1| histidine protein kinase sensor [Yersinia pestis KIM 10]
 gi|108807298|ref|YP_651214.1| signal transduction histidine kinase [Yersinia pestis Antiqua]
 gi|21959245|gb|AAM85945.1|AE013841_10 putative Histidine protein kinase sensor [Yersinia pestis KIM 10]
 gi|108779211|gb|ABG13269.1| signal transduction histidine kinase [Yersinia pestis Antiqua]
          Length = 1283

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         N 
Sbjct: 710 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSNR 764

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  +A+     +     + Q  A 
Sbjct: 765 PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPIAN 824

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT   G V V + W     Q+ 
Sbjct: 825 ERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPSDEQHG 883

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 884 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIALE 943

Query: 460 SKLREGVEVIAILPN 474
           S+L +G  ++  LP 
Sbjct: 944 SQLGKGTSLLITLPL 958


>gi|117926486|ref|YP_867103.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610242|gb|ABK45697.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 910

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I      +      + RAE  N AKS FLA+MSHE+RTPLN I+G  E +  E +   
Sbjct: 513 RDITREREQQRQLQTAKDRAESANAAKSAFLATMSHEIRTPLNGIIGMLEHLRQEPL--- 569

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                KE    I RS + LL+L+N ILD S+IEA +            ++++ I + +L 
Sbjct: 570 -EAALKERFDLICRSSEVLLDLLNNILDFSKIEADQLRFESIPYRPKQLIQDGIELHKLL 628

Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399
           A EK I++     P+L S    D   +RQ+++NL+SNA+KFT   G V +      G   
Sbjct: 629 AHEKGIDLSCHCHPNLPSSSMGDPTRIRQILINLVSNAIKFTET-GYVQIEAYLEEGAPA 687

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             +I++ D+G GI E ++  + T F Q   +I     G GLGL I++ ++    GQ  + 
Sbjct: 688 QLHINVSDSGSGIPEAQLAQLFTPFTQADGSISRRHGGTGLGLAISKRLVEAMYGQISVT 747

Query: 460 SKLREGVEVIAILPNTRVLNFI 481
           S++ EG   +  +P+      +
Sbjct: 748 SQVGEGSSFLMTIPHQPPSQAL 769


>gi|134295369|ref|YP_001119104.1| histidine kinase [Burkholderia vietnamiensis G4]
 gi|134138526|gb|ABO54269.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 439

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 152/447 (34%), Gaps = 26/447 (5%)

Query: 47  RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106
           R    L L VL+   +G +           ++ +A    +    +++             
Sbjct: 7   RFLVSLMLLVLISVLVGVFAGPIAGLAFAVVMLVAQGFFSTFHTQRLWRLLDAP------ 60

Query: 107 RIWLLVGQIAIGLCWTLLTLVEP----GTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162
                    A G+ W  +                    + +  + A+  S     ML   
Sbjct: 61  --VYGEVPSAPGI-WGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASPNGVAML--D 115

Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222
                            +            L     F  Y+    +   + +      + 
Sbjct: 116 DHDQIEWCNAIAEVHFGVDAKRDLRQHITNLVRHPEFVRYLNGQHYDETLVMRGMGESRQ 175

Query: 223 DLIA-----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277
           +++        E  K L  +     E  +  +  F+A++SHEL+TPL  + GF E +   
Sbjct: 176 NVLEVQVFPYGENRKLLLTQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMREL 235

Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337
              PLN +    Y+  + +    + +++ ++L L+++E      ++ A+ +  +      
Sbjct: 236 ---PLNEDDRARYLDLMEQQASRMRHIVTDLLVLAKLEGESRPPTDHAVDMRALFDHLKE 292

Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397
             Q  +                 V   +  +     NL++NA+++T  GG++ V+     
Sbjct: 293 DAQTLS--NGHHDITFSIDETLGVTGAQTEVFSAFANLVTNAIRYTPDGGKIAVSWRREG 350

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
            +G   S+ D+G GI   ++P +   F +   +      G GLGL I + ++  H     
Sbjct: 351 AQGV-FSVTDSGFGIPAADLPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDSHLY 409

Query: 458 IRSKLREGVEVIAILPNTRVLNFIPED 484
           ++S+   G    A  P +RV+   P  
Sbjct: 410 VQSEEGRGSTFTARFPASRVIAIRPAA 436


>gi|110632374|ref|YP_672582.1| histidine kinase [Mesorhizobium sp. BNC1]
 gi|110283358|gb|ABG61417.1| histidine kinase [Chelativorans sp. BNC1]
          Length = 424

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 3/235 (1%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
            A   +  ++ F+A+ SHELRTPL +I GF E +        + +    ++  +      
Sbjct: 188 EARRIDRMRADFIANASHELRTPLASIAGFIETLRGPARD--DAKARDSFLQIMQDQTSR 245

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           +  LI+++L LSR+E   Y      I L  ++      L   A++  + I   +      
Sbjct: 246 MARLIDDLLSLSRLEVKPYGKPTEKIDLRPVIGGVRDALATLAKDSGVTIELDMPDEPLE 305

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPT 419
           V   +  + QV  NLL NA K+ + GGRV V+ G       + +++ D GPGI E  IP 
Sbjct: 306 VLGHQDELVQVFENLLENACKYGSPGGRVIVSAGKPVEGLERTVTVTDFGPGIPEEHIPR 365

Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
           +   F + ++    A +G GLGL I + I+  H  +  IRSK+ EG       P 
Sbjct: 366 ITERFYRVTVEKGRAPKGTGLGLAIVKHILTRHDARLSIRSKIGEGSSFTIHFPA 420


>gi|187730927|ref|YP_001879108.1| phosphate regulon sensor protein [Shigella boydii CDC 3083-94]
 gi|187427919|gb|ACD07193.1| phosphate regulon sensor protein PhoR [Shigella boydii CDC 3083-94]
          Length = 431

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 148/440 (33%), Gaps = 25/440 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILP 473
            +  I S + +G     ++P
Sbjct: 403 SRLNIESTVGKGTRFSFVIP 422


>gi|327192369|gb|EGE59331.1| phosphate regulon, two-component sensor histidine kinase protein
           [Rhizobium etli CNPAF512]
          Length = 406

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 166/429 (38%), Gaps = 24/429 (5%)

Query: 44  SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103
           +  R    + L  +L A I      N    +  L+ +++ A   +    +     +  E 
Sbjct: 2   ARIRRERPVLLAAILSALIALAAGMNKWVVLVLLLVMSLTAL-FNEAPVLKAEPAEPEET 60

Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163
                   +  ++  L    + ++              +      +++ A  +  L    
Sbjct: 61  APETPPSRLPDVSATLAGLDIPVMVLSDDASVLFQNRAAEKAFGEVALGAHISARLRS-- 118

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                P V+ +  + I +     I  A  L +   +        F+++ +          
Sbjct: 119 -----PGVLDMVRETIATNAPNQIEHAERLPSERVYIVRSAPVEFQADGQRERFFILSFR 173

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
            I+E+                 +  +S F+A+ SHELRTPL ++ GF E I+       +
Sbjct: 174 DISEVRR--------------IDRMRSDFVANASHELRTPLASLRGFIETIQ--GPAKND 217

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            +   +++G +      +  L++++L LSR+E   +   +  + L+ ++      L   A
Sbjct: 218 QKAQAQFLGIMFDQTTRMSRLVDDLLSLSRLELKSHIAPDEKVDLVPLLGHVRDSLVPLA 277

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
           ++  +EI   +      V  D   + QV  NL+ NA K+   G  V V +   +     +
Sbjct: 278 RDVGVEINLHLPDGKVEVLGDRDELVQVFENLMENACKYGQEGKVVDVRLKNGADGPVEV 337

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           SI D GPGI    +P +   F + SI    +++G GLGL I + I+  H  + +++S++ 
Sbjct: 338 SIIDKGPGIPAEHVPRLTERFYRVSIEDSRSKKGTGLGLAIVKHILTRHRARLIVKSEVG 397

Query: 464 EGVEVIAIL 472
           +G +     
Sbjct: 398 KGTDFTVRF 406


>gi|304406317|ref|ZP_07387974.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304344901|gb|EFM10738.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 474

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 153/347 (44%), Gaps = 12/347 (3%)

Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205
           L+   +   ++      V      + +  +   ++    + + ++  +   +   T++  
Sbjct: 140 LVVGLVRYSASLERIDDVVARIIGLTLLTAAAVVLLFLGVSLWMSKRIVKPIRELTFVAR 199

Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265
            +   + +  +     D++    E+  +L+ +  KR       K+ F++S+SHELRTPL 
Sbjct: 200 QMADGDWQRRAVPRSADEIGQLAEMLNTLAAQLTKR----EQLKNDFISSISHELRTPLT 255

Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325
           +I G+SE +        + E  +  +  I +  + L  L+ ++LD S++     EL    
Sbjct: 256 SIKGWSETLAE---DETDREELELGLAVISQETERLHGLVEDLLDFSKLYDRSIELHPDY 312

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385
           + L   V+E +  L +R +   +++   +      V  D   ++QV++NL+ NA KFT  
Sbjct: 313 LDLNRPVKETLKQLGVRQEATGVQLIASLSEHPLMVHGDVNRLKQVLINLIDNAYKFTPQ 372

Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445
           GG + VT      R   ++I D G GIA   +P V   F +G  A    +QG GLGL I 
Sbjct: 373 GGSIRVTTRAL-DREAVLTIADTGAGIAPEHLPHVTDKFYKGDSA----KQGSGLGLAIC 427

Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492
           + I+A H G   + S+   G  V   +P  R  +    D   S   K
Sbjct: 428 REIIALHSGSMALVSEWGAGTAVTIRIPLQRGDSAGQADESISIDIK 474


>gi|228938688|ref|ZP_04101293.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971570|ref|ZP_04132194.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978181|ref|ZP_04138559.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228781653|gb|EEM29853.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228788229|gb|EEM36184.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821064|gb|EEM67084.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939196|gb|AEA15092.1| sensor protein resE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 591

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 21/251 (8%)

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
           + +++E  +R E     +  F+A++SHELRTP+  + G+SE I  + +     E   E++
Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
             I+     L  L+NE+LDL+R+E+G  EL    + +   V +     Q  A++K +E+ 
Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVELT 465

Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411
                 +     D   M QV+ NL+ NA++ T  GG V + +  T   G    ++D+G G
Sbjct: 466 VDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVID-TKNNGLIFEVQDSGVG 524

Query: 412 IAEGEIPTVLTSFGQGSIAIKS-------AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
           I E +IP +   F +   A                    IA++I+  H G+  + S + E
Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVVGE 578

Query: 465 GVEVIAILPNT 475
           G      LPN 
Sbjct: 579 GTTFSVYLPNR 589


>gi|225388143|ref|ZP_03757867.1| hypothetical protein CLOSTASPAR_01878 [Clostridium asparagiforme
           DSM 15981]
 gi|225045804|gb|EEG56050.1| hypothetical protein CLOSTASPAR_01878 [Clostridium asparagiforme
           DSM 15981]
          Length = 848

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
            +KSRFL++MSH++RTP+NAI+G +++ +     P+     K+ +  I  SG+ L+ LIN
Sbjct: 328 QSKSRFLSNMSHDIRTPMNAIIGMTKIAQEHLEEPV---KVKDCLKKIDLSGRLLVGLIN 384

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADE 365
           +ILD+S+IE+G+  L+    SL+++++  + + Q     K      +  D     +  D 
Sbjct: 385 DILDMSKIESGKMVLNNDTASLVELMQNLVSITQPTVFSKKQVFNIRLHDIRHERLIFDS 444

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ--YISIKDNGPGIAEGEIPTV 420
             + QV++NL+ NAVKFT  GG + + V        +       + D G GI+      +
Sbjct: 445 LRLNQVLINLMGNAVKFTPEGGSISLDVTEEPAVDDQFVHLVFKVADTGIGISREFQKNL 504

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480
            +SF +   +     +G GLGL I + I+   GG   + S+L +G      L     +  
Sbjct: 505 FSSFTRERDSKIDKIEGSGLGLAITKMIVTMMGGTIAVESELGQGSVFTVEL--DLPVAG 562

Query: 481 IPED 484
            PE+
Sbjct: 563 APEE 566


>gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator
            [Flammeovirga yaeyamensis]
          Length = 1385

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 133/297 (44%), Gaps = 5/297 (1%)

Query: 178  AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
             I +   +++S+  +    L+++  + Y +    + ++   +    + A  +    +   
Sbjct: 803  HIWNPKPIELSIEILPPLWLTWWAKLFYVI--VVIGMVYFFSIYTVINARKKSQLEMVKF 860

Query: 238  TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              ++ E+ +  K +F  ++SHELRTPL  I    E +          +  K Y   IH++
Sbjct: 861  EHEKLEDLSQLKLQFFTNISHELRTPLTLINTPVEQLIKRGKSLSEYDREKSY-QLIHKN 919

Query: 298  GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
             QHL+ L+N++LD  ++E G+  L  +  +      +     +  A++ NI +       
Sbjct: 920  IQHLMRLVNQLLDFRKVEQGKMSLHLTRGNWSTFAEQVYFSFKEFAEQTNITLNYHASDD 979

Query: 358  LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
                  D   + +++ NLLSNA KFT   G + ++V   +     I+++D G GI + +I
Sbjct: 980  KIFGLLDTDKVEKILYNLLSNAFKFTNE-GEISMSVTQENE-FVKITLEDTGIGIPKEQI 1037

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              +   F Q      +  +G G+GL   +S++  H G+  + SK+ +G       P 
Sbjct: 1038 KFLFDRFYQVEKLKNAKHRGTGIGLAFTKSLVDLHHGEITVDSKVNKGTIFTLTFPL 1094


>gi|325496973|gb|EGC94832.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii
           ECD227]
          Length = 912

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 331 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 390

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 391 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVVEHRQARAEAEKASQAKSAFLAA 450

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 451 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 506

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 507 AGGKNVSVSDEPFEPRPLMESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 566

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 567 TNLLSNALRFTDE-GQIILR-SRTDGEQWLLEVEDSGCGIDPAKLTEIFQPFVQVSGKR- 623

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 624 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 676


>gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
 gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
          Length = 771

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 9/276 (3%)

Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258
           F+  +           L   ++    I +   A+      R+ AE  + AKS FL+ MSH
Sbjct: 351 FWASVVITAQYDGTGALRGFSKITRDITDRRAAEIALRTAREEAERASRAKSEFLSRMSH 410

Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318
           ELRTPLN+ILGF++++          +T K ++G I R+GQHLL LINE+LD+++IEAG 
Sbjct: 411 ELRTPLNSILGFAQLL-----DMDAAKTQKAHVGHILRAGQHLLTLINEVLDIAKIEAGS 465

Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377
             L+ + + L  +++E + ++   A +  IE+       +   + AD + + QV+LNLLS
Sbjct: 466 LALNIAPLPLTQVLQEALTLVSPMATDAGIELQPLPTLAADIGIVADRQRLTQVLLNLLS 525

Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437
           NA+K+    G+V + V   + +   +S+ D G GIA   +  + T F +         +G
Sbjct: 526 NAIKYNRRDGQVSIEVTVDA-QRIGVSVCDCGKGIAADHLGQLFTPFERLGADPN--VEG 582

Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            GLGL +++S++ N  GQ  + S+   G      LP
Sbjct: 583 SGLGLALSKSLLENMDGQLHVHSQAGIGSRFTLELP 618


>gi|294491224|gb|ADE89980.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           IHE3034]
 gi|315287606|gb|EFU47012.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 110-3]
          Length = 900

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 18/344 (5%)

Query: 153 ALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           AL   +          P+     + Q ++   +            L     +      S 
Sbjct: 333 ALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392

Query: 212 VKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +   +    A+     AEL+       + R  AE+ + AKS FLA+MSHE+RTPL  I
Sbjct: 393 HALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGI 452

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG--RYELSESA 325
           LG ++++             ++ +  I  SG+ LL ++N+ILD S IEAG     +S+  
Sbjct: 453 LGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEP 508

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
                ++   + ++  R + + I +  +I   + + +  D + +RQVI NLLSNA++FT 
Sbjct: 509 FEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVITNLLSNALRFTD 568

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + +    T G    + ++D+G GI   ++  +   F Q      S   G GLGL I
Sbjct: 569 E-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV----SSKRGGTGLGLTI 622

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +  +    GG+    S    G      LP       +P+  +++
Sbjct: 623 SSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|209744224|gb|ACI70419.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744230|gb|ACI70422.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|320643768|gb|EFX12891.1| phosphate regulon sensor protein [Escherichia coli O157:H- str.
           493-89]
 gi|320649119|gb|EFX17697.1| phosphate regulon sensor protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656012|gb|EFX23928.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662569|gb|EFX29958.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665139|gb|EFX32232.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 431

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 150/445 (33%), Gaps = 25/445 (5%)

Query: 36  EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95
               L +E L    P   L                   +W    L      LS    V  
Sbjct: 6   SWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL----LRLSWWLWVDR 61

Query: 96  SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155
           S         W                L  L +      +      +          +L 
Sbjct: 62  SMTPPPGRGSWEPL-------------LYGLHQMQLRNKKRRRELGNLIKRFRSGAESLP 108

Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215
           + ++        F           +     +      L     F  Y+    F   + ++
Sbjct: 109 DAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLV 168

Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273
                  ++       K L    R   +  +   A+  F A++SHELRTPL  + G+ E+
Sbjct: 169 LNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEM 228

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           ++ +   PL     ++ +  +    Q +  L+ ++L LS+IEA   +L    + +  ++R
Sbjct: 229 MDEQ---PLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLR 285

Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393
             +        +K      +ID  L  V  +E  +R  I NL+ NAV  T  G  + V  
Sbjct: 286 -VVEREAQTLSQKKQTFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343

Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
                     S++DNGPGIA   IP +   F +   A      G GLGL I +  + +H 
Sbjct: 344 QRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHE 402

Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478
            +  I S + +G     ++P   ++
Sbjct: 403 SRLNIESTVGKGTRFSFVIPERLIV 427


>gi|213584048|ref|ZP_03365874.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 396

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
           S FLA++SHELRTPL  I+G  ++++ + +    +      +  ++ S   LL +I++IL
Sbjct: 1   SMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----RLVTAMNNSSSLLLKIISDIL 56

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368
           D S+IE+ + ++     S  +++             K + ++  I+P +   +  D   +
Sbjct: 57  DFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRL 116

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
           +QVI NLLSNA+KFT I G + + V    G    I ++D G GI   E+  +   F Q  
Sbjct: 117 QQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVG 174

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
             ++   QG GLGL I + +++   G   + S+   G +    +P 
Sbjct: 175 TGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 220


>gi|170743455|ref|YP_001772110.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197729|gb|ACA19676.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 891

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/407 (22%), Positives = 170/407 (41%), Gaps = 11/407 (2%)

Query: 82  VYAANLSLGKKVMNSDIKIGEVYVWRI--WLLVGQIAIGLCWTLLTLVEPGTWTPEYLT- 138
                L+    +           +W     L V      +    +TL+       E L  
Sbjct: 99  GTGLRLARDLDLDREQGVSPFDLLWTRTVRLSVPVRENTVVVGRVTLIAETADLVERLYE 158

Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198
           +  +A +   L++             L+     ++ +   +   H     +  +    + 
Sbjct: 159 VLANAAMTAGLAVLVGLAVAWRLQAALTRPLATLSHAMTTVRENHDYAHRVTVVAEDEVG 218

Query: 199 FFTYITYHLFKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257
                   L  +  +      A +  L  E+    +   E ++ AE  N AKS FLA+MS
Sbjct: 219 ALARTFNGLLDAVDERDRRLAAHRARLEQEVSDRTADLSEAKEAAEAANAAKSSFLATMS 278

Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317
           HE+RTP+N +L  +E++    +        + Y   I RSGQ+LL +IN+ILD +++EAG
Sbjct: 279 HEIRTPMNGMLVMAELLASGDL----PARQRRYAEVIARSGQNLLAIINDILDFAKVEAG 334

Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376
           + +L    +   ++    + +   RA+ K +++   + P +   +  D   + QV+ N +
Sbjct: 335 KLDLERIPVDPAEVADTVVTLFGERARGKGLDLAALVAPDVPRAIAGDPVRLGQVLGNFV 394

Query: 377 SNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435
           +NA+KFT   G V + +    G     +S+ D G GI    + ++ T+F Q   +     
Sbjct: 395 NNALKFTEA-GHVLIRLEMREGGARLRLSVTDTGIGIPAEALGSLFTAFSQADQSTTRRF 453

Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
            G GLGL IA+ + A  GG+  + S++ EG    A +P   +    P
Sbjct: 454 GGTGLGLSIAERLAAAMGGRVGVESRVGEGSTFFAEIPVEVLEPARP 500


>gi|45441480|ref|NP_993019.1| putative histidine protein kinase sensor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45436341|gb|AAS61896.1| putative Histidine protein kinase sensor [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 1289

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         N 
Sbjct: 716 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSNR 770

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  +A+     +     + Q  A 
Sbjct: 771 PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPIAN 830

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT   G V V + W     Q+ 
Sbjct: 831 ERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPSDEQHG 889

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 890 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIALE 949

Query: 460 SKLREGVEVIAILPN 474
           S+L +G  ++  LP 
Sbjct: 950 SQLGKGTSLLITLPL 964


>gi|146277153|ref|YP_001167312.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555394|gb|ABP70007.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 346

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+    +  F+A++SHELRTPL A+LGF E ++       +      ++  + R    + 
Sbjct: 110 EQMGAIRRDFVANVSHELRTPLTALLGFIETLQ--GAAREDPAARARFLAIMAREAGRMN 167

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
            L+ ++L LSR+EA       + + +  ++ + +  L+  A+   + I +  +     + 
Sbjct: 168 RLVQDLLSLSRVEAEERVRPVTQVDVSAVIGQAVAALRPMAEAAGVAIERTGETGHLPLP 227

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGE 416
            D   + QV  NL+ NAVK+ A G  V V V               I + D G GI    
Sbjct: 228 GDADQLTQVFHNLIENAVKYGASGKLVTVEVTRDPDGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475
           +P +   F +        + G GLGL I + I+  H G+F I S+L +G   I  LP +
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFRIESELGKGSRFIVTLPAS 346


>gi|312963213|ref|ZP_07777697.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           WH6]
 gi|311282479|gb|EFQ61076.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           WH6]
          Length = 796

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 95/441 (21%), Positives = 169/441 (38%), Gaps = 26/441 (5%)

Query: 42  VESLFRVSPILPL-FVLLVANIGTWFTQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIK 99
              L+ +  I       L  N        P  P W+   T  +  A+   G     S + 
Sbjct: 210 TSYLYYIFYIASFGMYQLSVNGAAVEYFWPNNPWWANAATPFLIGASALFGSLFARSFLH 269

Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159
             +   W   LL+  +A G    LL+L+         L    +    +++ ++A++ +  
Sbjct: 270 TAQHSRWINRLLLALVACGAVVMLLSLMTSYALAL-RLATGLALVFTVSIFVAAINAWYC 328

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
              V   F      ++  A +   V++ +L  +      F T     +  +    L   A
Sbjct: 329 GQRVARYFI-----IAWSAFLLGGVVN-TLMVLGYLPNVFLTMYASQIGSAIEVALLSLA 382

Query: 220 EKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGFSE 272
             D + A  E       +  ++ E         N  K  FLA+++HELRTP+N ++G  E
Sbjct: 383 LADRINAMREQQAQTLFDASQKLEVLNQQLARSNRLKDEFLATLTHELRTPMNGVIGSLE 442

Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332
           +++   +    ++   +Y      S + ++ ++N IL L+ ++AGR        SL   +
Sbjct: 443 LMQTVPL----DDDLAQYQQTAAGSARDMMRMVNGILTLTELQAGRLSAQPDVFSLRGAL 498

Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391
                     AQ K +     +   L   +  D   + Q +  LL NAVKFT   G V +
Sbjct: 499 DTLRQQFSASAQGKGLAFSIDVAGELPDRLVGDACKLVQCLDCLLDNAVKFTHE-GAVRL 557

Query: 392 TVG--WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447
            V     S     +S  + D G G A  +  T+   F Q   +      G+G+GL I + 
Sbjct: 558 RVVGVPQSDGRLRLSFIVTDTGIGFAFLDEATLYQRFFQVDGSTTREYGGLGIGLAICRQ 617

Query: 448 IMANHGGQFLIRSKLREGVEV 468
           ++   GG+    S+ R+G   
Sbjct: 618 LIELLGGRLTHHSEPRKGSRF 638


>gi|260172697|ref|ZP_05759109.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315920990|ref|ZP_07917230.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694865|gb|EFS31700.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 701

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 7/266 (2%)

Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270
            + +      +   I +L+         R RAE+ +  K+ F+ +MSHE+RTPLNAI+GF
Sbjct: 442 AIALTLYLYLRRKSIRQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGF 501

Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330
           S+++    + PL +E   E+   +  + + L  L+N+ILDLS +E+G+Y ++ ++    +
Sbjct: 502 SQLLSNPDL-PLEDEEKLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNE 560

Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390
           + R  +  +  R  E     +         +  DE+ ++QV++N L+NA K T   G +H
Sbjct: 561 MCRLILSTVMDRKAEGVKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEK-GEIH 619

Query: 391 VTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449
           +    T        S+ D GPGI   ++ +V   F +        +QG GLGL I ++I 
Sbjct: 620 LHCSLTEHPDRITFSVSDTGPGIPADKMDSVFERFKKLDE----FKQGSGLGLNICRTIA 675

Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475
               G+  +      G   + ILP  
Sbjct: 676 ERLHGEVKVDKSYTNGARFLLILPLK 701


>gi|238789481|ref|ZP_04633266.1| Histidine kinase [Yersinia frederiksenii ATCC 33641]
 gi|238722431|gb|EEQ14086.1| Histidine kinase [Yersinia frederiksenii ATCC 33641]
          Length = 1190

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+           
Sbjct: 628 ISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRNEQ 682

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K  +  + ++ Q L+ L+++I+D ++IEAG+  +  + +     +     + Q  A 
Sbjct: 683 PVDKNTLVTVSKTAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEMERMFTIYQPIAD 742

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT  GG V V + W     +  
Sbjct: 743 ERRLRFTSWMDDQIPDLLMADMLRIRQVMGNLLGNALKFTEHGG-VSVDITWEPMDEKRG 801

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GGQ  + 
Sbjct: 802 IMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQITLE 861

Query: 460 SKLREGVEVIAILPNTRVL-NFIPEDNH 486
           S+L +G  +   LP      + +P+D++
Sbjct: 862 SQLGKGTSLFITLPLEVATSDDLPQDSN 889


>gi|307571089|emb|CAR84268.1| sensor histidine kinase [Listeria monocytogenes L99]
          Length = 479

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 137/315 (43%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + VAL   AI+S   ++       AT           L ++N        
Sbjct: 170 RYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYKARLKENNFD------ 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        + +++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 224 EIGALAIDFNKMTQTLEISQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDII 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 284 PKSETD---RCIALIDTEARRLTKLVNENLDYEKIRSNKIKLHKTRFNGKEFLELIKEQL 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK  +I   +D  ++ ++AD   + QV +N++ N+V+FT   G++ +T G    +
Sbjct: 341 DYVASEKGNKITVAVDKDMA-IYADYDRLTQVFINIVKNSVQFT-ENGQITLT-GTQDYK 397

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 398 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTITV 457

Query: 459 RSKLREGVEVIAILP 473
            S+  +G      LP
Sbjct: 458 TSEPNKGTSFTIRLP 472


>gi|229017878|ref|ZP_04174761.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|228743469|gb|EEL93586.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 311

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K   DE R+       AKS  + ++SH+LRTPL +I+G+  +I  +     +    +
Sbjct: 71  EQLKVSIDEERQ----AEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNY--RDEVELR 124

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            YI  I+     L  L+N++ + +R++     L+   I +++++ +  +  +++ QE NI
Sbjct: 125 HYIQVIYDKVTRLNALMNDLFEYTRVQNKELSLNSVPIDIVELLGQLTVQFRIQLQEANI 184

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           E           V AD   + +V  NL+ NA+ +   G  + +T  +       I I + 
Sbjct: 185 ECRPSFPSQKLMVLADGDKLVRVFENLIINAITYGNDGNHIDITA-YEDNNTIAIDITNY 243

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G  I   ++P V   F +   +  +   G GLGL IA+SI+  H G   + S   +    
Sbjct: 244 GQAIPSTDLPHVFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEK-TTF 302

Query: 469 IAIL 472
              L
Sbjct: 303 TVKL 306


>gi|229097095|ref|ZP_04228061.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228686324|gb|EEL40236.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
          Length = 312

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 8/244 (3%)

Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288
           E  K   DE R+       AKS  + ++SH+LRTPL +I+G+  +I  +     +    +
Sbjct: 72  EQLKESIDEERQ----AEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNY--RDEVELR 125

Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348
            YI  I+     L  L+N++ + +R++     L  + I +++++ +  +  +++ QE NI
Sbjct: 126 HYIQVIYGKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANI 185

Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408
           +           V AD + + +V  NL+ NA+ +   GG + +T  + S     I I + 
Sbjct: 186 QCRPSFPSQKLMVLADGEKLVRVFENLIINAIAYGNEGGYIDLTA-YESNNMITIDITNY 244

Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468
           G  I   ++P +   F +   +  +   G GLGL IA+SI+  H G   + S  ++    
Sbjct: 245 GQPIPSTDLPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKK-TTF 303

Query: 469 IAIL 472
              L
Sbjct: 304 TVKL 307


>gi|217964345|ref|YP_002350023.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|290893867|ref|ZP_06556845.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|217333615|gb|ACK39409.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|290556584|gb|EFD90120.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|313608692|gb|EFR84526.1| sensor histidine kinase [Listeria monocytogenes FSL F2-208]
          Length = 476

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 137/315 (43%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + VAL   AI+S   ++       AT           L ++N        
Sbjct: 167 RYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYKARLKENNFD------ 220

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        + +++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 221 EIGALAIDFNKMTQTLEISQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDII 280

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 281 PKSETD---RCIALIDTEARRLTKLVNENLDYEKIRSNKIKLHKTRFNGKEFLELIKEQL 337

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK  +I   +D  ++ ++AD   + QV +N++ N+V+FT   G++ +T G    +
Sbjct: 338 DYVASEKGNKITVAVDKDMA-IYADYDRLTQVFINIVKNSVQFT-ENGQITLT-GTQDYK 394

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 395 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTITV 454

Query: 459 RSKLREGVEVIAILP 473
            S+  +G      LP
Sbjct: 455 TSEPNKGTSFTIRLP 469


>gi|261407148|ref|YP_003243389.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261283611|gb|ACX65582.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 378

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 128/303 (42%), Gaps = 13/303 (4%)

Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237
            +         ++G+L   L         + + ++ +      KD+     +    ++  
Sbjct: 85  FVAIGLFFSYWMSGVLTLPLKKLIAAIERVAQGDLNVKVPVDTKDEYGKVAQTFNDMTF- 143

Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297
              R  E    + R +A ++HELRTPL+ +      ++LE      +    E +  +H  
Sbjct: 144 ---RLREAEETRRRLVADIAHELRTPLSVMQ-----LKLENYQQAGHHVPPEMLLRLHDE 195

Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357
              L  L+N++  LS  E+GR  L    + L   +   +  ++  A+E  +++      S
Sbjct: 196 VIRLSQLVNDLHILSLAESGRLSLERKPLDLTMHLERVVDDVKYEAEENGLDVCLYTISS 255

Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413
             +V AD + + QV +NLL+NA+++T  GG++ V +             +S+ D G GI 
Sbjct: 256 PVTVMADARRITQVFINLLTNAIRYTPRGGKITVEIEDRVFDRNAFFACVSVIDTGIGIP 315

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             E+P +   F +   A      G GLGL IA   +  HGG   + S+  EG      LP
Sbjct: 316 AEELPYLFDRFYRVDEARSRHTGGTGLGLSIAHHFVRAHGGFIRVASQSDEGTTFTVFLP 375

Query: 474 NTR 476
             R
Sbjct: 376 IGR 378


>gi|14193095|gb|AAK55818.1|AF219111_2 putative histidine kinase [Streptococcus pneumoniae]
          Length = 449

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           F++++SHELRTPL ++  + E ++   +         ++I         ++ ++ ++L L
Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDEGALCETVAP---DFIKVSLDETNRMMRMVTDLLHL 268

Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368
           S I+     L    I+    +   +      + + +EK  E+ +    +   +  D   M
Sbjct: 269 SCIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKM 328

Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428
            QV+ N+L+NA+K++  GG++ V +  T  +   +SI D+G GI + ++P +   F +  
Sbjct: 329 TQVVDNILNNAIKYSPDGGKITVRMKTTEDQMI-LSISDHGLGIPKQDLPRIFDRFYRVD 387

Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            A   A+ G GLGL IA+ I+  H G    +S+  +G     +LP
Sbjct: 388 RARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1172

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 6/240 (2%)

Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293
              +  ++A+E +  KS FLA+MSHE+RTP+N I+G ++++    +     +  + +   
Sbjct: 645 EMKKAEEQAKEASRTKSEFLANMSHEIRTPINGIVGMNDLLLATEL----TKKQRHFAEL 700

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           +H S + LL LIN+ILD S+IEAG+  +      L  ++   I     RAQ+K +E+   
Sbjct: 701 VHSSSESLLLLINDILDFSKIEAGKLSIESIDFDLHLLLGNIIDTFASRAQQKGLELIFD 760

Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412
           + P +   + +D   +RQV+ NLL NA+KFT   G + + +     +     I D G GI
Sbjct: 761 LHPDVPQWIASDPGRIRQVLNNLLGNAIKFTHH-GEIILRITLDGEKQLKFCIIDTGIGI 819

Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
            E     + + F Q   +      G GLGL I++ +    GG   + S+ ++G      +
Sbjct: 820 HEDNQAALFSKFMQVDSSTTRNFGGTGLGLAISKQLSELLGGTVGVSSRWQQGSTFWFTI 879


>gi|283788151|ref|YP_003368016.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
 gi|282951605|emb|CBG91305.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
          Length = 778

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 7/252 (2%)

Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
           +   E  +  K+ F++++SHELRTPLN I+G S ++    +        ++Y+  IH S 
Sbjct: 273 QDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQEKYLKTIHVSA 328

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
             L N+ N+I+D+ ++E  + +L    +     + +   +  L+AQ+K +    +    L
Sbjct: 329 VTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPL 388

Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417
              V  D   +RQ++ NL+SNAVKFT   G+V V V +  G   +  ++D+G GI + E 
Sbjct: 389 PHKVVTDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRYDEGDMLHFEVEDSGIGIPQDEQ 447

Query: 418 PTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             +   + Q   +       G G+GL +++ +  + GG   + S+  +G      +    
Sbjct: 448 DKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKSMGGDITVASQTNKGSTFTLTVHAPA 507

Query: 477 VLNFIPEDNHES 488
           V   + +   E 
Sbjct: 508 VAEEVEDAFEED 519


>gi|153808571|ref|ZP_01961239.1| hypothetical protein BACCAC_02867 [Bacteroides caccae ATCC 43185]
 gi|149128893|gb|EDM20110.1| hypothetical protein BACCAC_02867 [Bacteroides caccae ATCC 43185]
          Length = 538

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
            ++   ++ +K+AE     KS FL++MSHE+RTPLNA+ GFS ++  E+   ++ ET K+
Sbjct: 292 QSQQEQEKVKKQAENSIRTKSLFLSNMSHEIRTPLNALSGFSTILTEES---IDEETRKQ 348

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
               I ++ + LL LIN+++DLS +E G+          + + R  I M++ + ++ + +
Sbjct: 349 CNDIIQQNSELLLKLINDVIDLSSLEIGKMTFKFKICDAVGLCRNVIDMVE-KIKQTHAD 407

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +          +  D   ++QV++NLL NA KFT+  G + + +   +      S+ D G
Sbjct: 408 VRFSTPLDSLELLTDSARLQQVLINLLINATKFTSQ-GSITLQLEQQTEDTALFSVTDTG 466

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
            GI + +   +   F +         QG GLGL I Q I+   GG   I     EG   +
Sbjct: 467 TGIPKEKQKKIFNRFEKL----NENAQGTGLGLSICQLIIEQLGGSIWIDPDYEEGSRFL 522

Query: 470 AILPNTRVLNFIPE 483
              P  +      E
Sbjct: 523 FTHPIDKSDQGKEE 536


>gi|328555716|gb|AEB26208.1| sensor histidine kinase [Bacillus amyloliquefaciens TA208]
 gi|328914102|gb|AEB65698.1| Phosphate regulon sensor protein phoR [Bacillus amyloliquefaciens
           LL3]
          Length = 472

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 14/344 (4%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           + +   A  +       +    L   +  S F  V   +  +  ++ +       ++   
Sbjct: 135 IIVVFQAISIDGRQAGVVQMSTLTQPLDDSLFRQVGIFAVLSFAALVIGLFVFLPVIRLT 194

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----KSR- 251
           L   + I + +   N   L  +   D   AE+E      ++  +R E    A    K R 
Sbjct: 195 LKPLSRIVHMMGDINAGSLDKRLPIDKKQAEIESLGISINQMLERIETSFQAEKEAKERI 254

Query: 252 --FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++  SHELRTPL +I GF E++          E  ++ +  ++        LI ++L
Sbjct: 255 RQFVSDASHELRTPLTSIHGFIEILMRGA--AEKPEQKEKALRSMYAESVRANKLIEDLL 312

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L++I+           +L  ++ E    L+L A+ + +E F            D+  M+
Sbjct: 313 FLAKIDR-VPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVDQQ---IKAVFDKDKMK 368

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QVILNL  NAV+ T     V +TV      G  + I DNG GIA   +P +   F +   
Sbjct: 369 QVILNLFYNAVQHTDEETGV-ITVSLQKDGGIMLMIADNGTGIAPEHVPHLFDRFYRAET 427

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +      G GLGL I ++I+ +H G   ++S+  +G   I  LP
Sbjct: 428 SRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471


>gi|303325669|ref|ZP_07356112.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863585|gb|EFL86516.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 885

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311
           FL++MSH++RTP+NAI+G + + E     P   E  ++ +  I  + + LL +INE+LD+
Sbjct: 499 FLSAMSHDIRTPMNAIIGMATIAERHAGDP---ERVRDCLDKISVASRLLLGIINEVLDM 555

Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371
           S+IE+G+  LS +   L D++R+ + M++   + +  E    +D S  ++  D + ++Q+
Sbjct: 556 SKIESGKLLLSNAPFDLNDLIRDTLDMIRPMLESRQHEFHLHMDISQPALQGDTQRIQQI 615

Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426
           +LNLLSNA K+T   GR+ +++   +          I ++DNG G++      +  SF +
Sbjct: 616 LLNLLSNAAKYTPDKGRISLSISEKATLAPPMSRIIIVVEDNGFGMSPEFQKRIYDSFAR 675

Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
                    QG GLG+PI +++     G   I S+L +G      L
Sbjct: 676 SDDERVHRIQGTGLGMPIVRNLARMMHGSITIESELNQGSRFTVEL 721


>gi|298247274|ref|ZP_06971079.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549933|gb|EFH83799.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 147/398 (36%), Gaps = 25/398 (6%)

Query: 95  NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT-----WTPEYLTIYKSATLLIAL 149
                    + W    L+G     L   +  L+                 +  ATLL+  
Sbjct: 8   RKHRHADHRHSWWHSPLLGYPLAVLFTAIAFLIPMSEKSVGIEDLFIEPPFVIATLLVGW 67

Query: 150 --SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207
              I      +L   + + ++ V    S    +  +++  +   ++   +     +  + 
Sbjct: 68  FWGIGPALLALLLEVLAIDYWLVPPLGSISFFLWPNIVSFAPFILIQLIVLGLIVVQKNY 127

Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
            +  +              E+        E+  R E+ +  K +FL+  SHELRTP+  I
Sbjct: 128 RQQLLHANQ----------EISQHAEELAESNTRLEQADRVKDQFLSMASHELRTPVTGI 177

Query: 268 LGFSEVIELETMGP-LNNETYK---EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323
            G+ +++        + N  +    + +G +    + L +L+N++LD++ + +G+  +  
Sbjct: 178 QGYVQLLLHRLKKQSIQNPEWLPMYDALGKVDEQTRRLTDLVNDLLDINTLRSGKMPVHL 237

Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383
               L  + R  +   Q         I  ++     +V  D +   QV+ NL+SNA+K++
Sbjct: 238 EFCELGCLCRRVVEEQQAL---VGRSIDLRLPADPVTVQVDNRRFSQVVSNLVSNALKYS 294

Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443
                + V V         +++ +  P + + +  ++   F +   A   A  G GLGL 
Sbjct: 295 PKNTPILVEVSQRP-GEAILAVHNESPVLTKEQQKSLFEPFYRSCEAQSPATPGWGLGLA 353

Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481
           I + I+  H G+  + S   +G      LP        
Sbjct: 354 ICKEIVVLHNGRIWVESSAEKGTTFFVALPLPTSSESA 391


>gi|295110689|emb|CBL24642.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 443

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 6/253 (2%)

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L+  ++          +  +E    +  F A++SHEL+TPL +I G++E++     
Sbjct: 197 ELRPLLKRVDQQNRQIARQIEELKEAEAVRREFSANVSHELKTPLMSISGYAELM---VN 253

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
           G +  E   E+ G I+     L  L+ +I+ LSR++     L    + L ++  + +  L
Sbjct: 254 GMVPPEKVPEFSGRIYHEAHRLSALVADIIQLSRLDEKSSGLPFEKVDLYEMAEDIVHHL 313

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
           +  A++KNI +     P    V      + +++ N+  NA+++T   G V +++G     
Sbjct: 314 ESAAEKKNITVSLDGSP--VIVNGVRHVIYEMLFNIADNAIRYTDSKGMVKISLGMHGEH 371

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
             Y  ++DNG GIAE E   +   F +   +      G GLGL I +     H  Q  + 
Sbjct: 372 PYY-CVEDNGIGIAEDEQKRIFERFYRVDKSHSRETGGTGLGLSIVKHGAILHNAQIKLE 430

Query: 460 SKLREGVEVIAIL 472
           S+  +G ++  + 
Sbjct: 431 SEPGKGTKMELVF 443


>gi|254520256|ref|ZP_05132312.1| sensor histidine kinase/response regulator [Clostridium sp.
            7_2_43FAA]
 gi|226914005|gb|EEH99206.1| sensor histidine kinase/response regulator [Clostridium sp.
            7_2_43FAA]
          Length = 1079

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 12/300 (4%)

Query: 181  SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240
                L   +  ++ + + +         +  +     +    +L ++L+  K L D    
Sbjct: 790  WQTPLAYVIYALIVSLVLYII-----WNRVKILDSLVEQRTHELNSKLKENKELYD---- 840

Query: 241  RAEEENLAKSRFLASMSHELRTPLNAILGFSEVI--ELETMGPLNNETYKEYIGDIHRSG 298
            +  +    K+ +  ++SHELRTPLN I+   ++I    E    +  E    Y+  + R+ 
Sbjct: 841  KLIKNEKYKNNYFVNLSHELRTPLNVIISTQQLITKLNEEDKDIPKEKILYYMSTLRRNS 900

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
              LL LIN I+D S+IE+G Y+L      ++ +V E ++ ++   +   IE+    D   
Sbjct: 901  DRLLKLINNIIDTSKIESGSYKLIIEKHDIVYLVEEIVLSMKDFIEANGIELVIDPDVEE 960

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
              +  D   + + I+NL+ NAVKFT  GG++ V +         IS+KD+G GI +    
Sbjct: 961  KIIECDGSEIEKCIVNLVGNAVKFTPRGGKIEVRI-VDLNNKVKISVKDSGIGIEKKYHD 1019

Query: 419  TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478
             +   FGQ    +     G GLGL + + ++  H G+  ++S+   G E + ILP    +
Sbjct: 1020 AIFDRFGQAYNDVSEEHGGSGLGLTVTKQLVTLHNGRIFVKSEPGHGSEFVIILPVKYTM 1079


>gi|145598493|ref|YP_001162569.1| signal transduction histidine kinase [Yersinia pestis Pestoides F]
 gi|145210189|gb|ABP39596.1| signal transduction histidine kinase [Yersinia pestis Pestoides F]
          Length = 1333

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284
           I++ +  +   +  R  AE  N  KS FLA++SHELRTP+ AI+G  E+         N 
Sbjct: 716 ISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL-----EIRSNR 770

Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344
              K+ +  + +S Q L+ L+++I+D ++IEAG+  +  +A+     +     + Q  A 
Sbjct: 771 PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPIAN 830

Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402
           E+ +     +D  +  +  AD   +RQV+ NLL NA+KFT   G V V + W     Q+ 
Sbjct: 831 ERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQ-GSVSVDITWEPSDEQHG 889

Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              I I D G GI+     T+   F Q +        G GLGL I   ++   GG+  + 
Sbjct: 890 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIALE 949

Query: 460 SKLREGVEVIAILPN 474
           S+L +G  ++  LP 
Sbjct: 950 SQLGKGTSLLITLPL 964


>gi|329954099|ref|ZP_08295194.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328528076|gb|EGF55056.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1356

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 6/232 (2%)

Query: 243  EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
            E  N +K RF  ++SHE RTPL  I+   E +    +       Y + +G I+++   L 
Sbjct: 818  EALNQSKLRFFTNISHEFRTPLTLIVAQVETLLQ--LQNFTPAIYNKILG-IYKNSIQLR 874

Query: 303  NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
             LI E+LD  + E G  ++     ++++ + E  ++    A  K I    +       VW
Sbjct: 875  ELITELLDFRKQEQGHMKIKVGPHNIVNFLYENYLLFLEYASAKQINFNFEKGTDELEVW 934

Query: 363  ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             D+K M++VI NLLSNA+K T     + ++V         I +KD G GI   EI  +  
Sbjct: 935  YDQKQMQKVINNLLSNAIKHTEAEDTITLSVKKEENN-VVIRVKDTGSGIDAKEIDKIFD 993

Query: 423  SFGQGS--IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
             F Q     +  + + G G+GL + + I+  H G   + S+L +G   I  L
Sbjct: 994  RFYQIDPINSTDAGKSGTGIGLALTKGIVELHHGTIRVESELGKGTSFIVTL 1045


>gi|308175742|ref|YP_003922447.1| sensor histidine kinase [Bacillus amyloliquefaciens DSM 7]
 gi|307608606|emb|CBI44977.1| sensor histidine kinase RBAM_037320 [Bacillus amyloliquefaciens DSM
           7]
          Length = 472

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 14/344 (4%)

Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196
           + +   A  +       +    L   +  S F  V   +  +  ++ +       ++   
Sbjct: 135 IIVVFQAISIDGRQAGVVQMSTLTQPLDDSLFRQVGIFAVLSFAALVIGLFVFLPVIRLT 194

Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----KSR- 251
           L   + I + +   N   L  +   D   AE+E      ++  +R E    A    K R 
Sbjct: 195 LKPLSRIVHMMGDINAGSLDKRLPIDKKQAEIESLGISINQMLERIETSFQAEKEAKERI 254

Query: 252 --FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309
             F++  SHELRTPL +I GF E++          E  ++ +  ++        LI ++L
Sbjct: 255 RQFVSDASHELRTPLTSIHGFIEILMRGA--AEKPEQKEKALRSMYAESVRANKLIEDLL 312

Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369
            L++I+           +L  ++ E    L+L A+ + +E F            D+  M+
Sbjct: 313 FLAKIDR-VPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVDQQ---IKAVFDKDKMK 368

Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           QVILNL  NAV+ T     V +TV      G  + I DNG GIA   +P +   F +   
Sbjct: 369 QVILNLFYNAVQHTDEETGV-ITVSLQKDGGIMLMIADNGTGIAPEHVPHLFDRFYRAET 427

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
           +      G GLGL I ++I+ +H G   ++S+  +G   I  LP
Sbjct: 428 SRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471


>gi|304406309|ref|ZP_07387966.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304344893|gb|EFM10730.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 503

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 143/338 (42%), Gaps = 9/338 (2%)

Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK---I 214
             P  V      +V+ L    +++  +L  ++   +   L         + + +++    
Sbjct: 165 PFPELVRTLLPILVLVLLAIMLLTGLLLYRNVTKTIIRPLDVLRRSAEQIKEGDLQFKLE 224

Query: 215 LSCQAEKDDLIAELEVAKSLSDET-RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273
              + E   L    E  +   +E+ + + + E+  K + ++++SH+L+TP+  I G+ E 
Sbjct: 225 PQSRDEIGQLSLTFEQMRQKLNESIQLQLQYEDNRK-QLISNISHDLKTPITTIKGYVEG 283

Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333
           I        + E   +Y+G I+     +  L++E+L  S+++  R   S   + L   + 
Sbjct: 284 IRDGL--ADSPEKLDKYVGTIYAKVTDMGRLVDELLLYSKLDLRREPYSFERVDLAAFIE 341

Query: 334 ECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHV 391
           + +       +E+ I +  + +    + V AD + +R+V+ NL+ N+VKF       + +
Sbjct: 342 DAVEESGFELEEQGIRVTLEGERLQDTDVMADRQKLRRVLGNLIQNSVKFMDKPDRSITL 401

Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451
            +         + + DNG GIA+  +P +   F +   +  S   G GLGL IA+ I+  
Sbjct: 402 RLREEGRATLVVEVTDNGAGIADEALPHIFERFYRAEASRNSRTGGSGLGLAIAKQIIEG 461

Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489
           HGG     S+L  G  +   L    V           T
Sbjct: 462 HGGTIEAESQLGAGTTMRIRLRKADVGAVASGATQRET 499


>gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 562

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 117/252 (46%), Gaps = 5/252 (1%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             + + ++ ++   +  +R +E    KSRF++  SHE R PL A+   +E++  +     
Sbjct: 252 RDLTQRKLLEAEMLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELL-EQYSHNW 310

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
             E   ++   I  S   +  L++++L +++ E+G+ E +   ++L  + ++ +  ++L 
Sbjct: 311 AEEKKLKHFNRIKDSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELG 370

Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402
              K  EI        S    DEK +R ++ NLL+NAVK++ +G  V         +   
Sbjct: 371 I-GKQHEISWINSGRASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNCHCRE-QEVI 428

Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462
             IKD G GI   +   +  SF +         QG GLGL I +  +  HGG+  + S++
Sbjct: 429 FEIKDQGIGIPPEDQKRLFESFHRAKNVGN--IQGTGLGLSIVKKSVDLHGGKLAVHSEV 486

Query: 463 REGVEVIAILPN 474
             G      LP 
Sbjct: 487 GVGTTFKVTLPL 498


>gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 555

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 6/231 (2%)

Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305
              +  F+ ++SHEL+TP+ AI GF+E +        +  T  +++  I    + L  LI
Sbjct: 326 EKMQLDFVGNVSHELKTPVTAISGFAETLLSGA--KNDPATLDKFLKIIFDESKRLTQLI 383

Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365
           N+IL LSR E+ +    ++ + L  +V + +  L    ++K I +   I P L  V  DE
Sbjct: 384 NDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDL-QVVTDE 440

Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425
           + + Q++ NLL+NAV +  + G V +T          +++ D G GI E E   +   F 
Sbjct: 441 RKLTQIVRNLLNNAVFYNRLAGHVTITAQVVE-GHLSLAVADTGIGIPETEQARIFERFY 499

Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
           +   A      G GLGL I   ++ +  GQ  + S++  G      LP ++
Sbjct: 500 RVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLPVSK 550


>gi|119945803|ref|YP_943483.1| fused multi-sensor protein [Psychromonas ingrahamii 37]
 gi|119864407|gb|ABM03884.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 882

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 13/270 (4%)

Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282
             I+  +  +      ++ AE+ + AK  FLA+MSHE+RTPL  +LG  EV+ +  +   
Sbjct: 341 RDISVRQQHEQQLIAAKETAEQVSQAKDSFLATMSHEIRTPLAGMLGMLEVLSMSPLDHE 400

Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342
                   +     S ++LL ++N+ILD S+I+ G+  LS  + S+  +++E +      
Sbjct: 401 QEP----ILKAAWDSARNLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVVNTYSHV 456

Query: 343 AQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TS 397
           A  KN++++Q  D  LS+    D   + QV+ N +SNA+KFT   G + +         S
Sbjct: 457 ASAKNLKLWQHADSQLSAAHIVDPLRLSQVLNNFVSNALKFTEQ-GEIELCAELLEQLES 515

Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
           G      +KD G GI +   P +   F Q S        G GLGL I   +     G+  
Sbjct: 516 GERIRFFVKDTGVGIPKIVQPKLFERFQQESADTARQYGGTGLGLSICLHLAEFLDGKIE 575

Query: 458 IRSKLREGVEV--IAILPNTRVL-NFIPED 484
           + S+   G       ILP +      +P  
Sbjct: 576 LVSEPGLGAIFSITVILPISAAPGEALPTP 605


>gi|300691228|ref|YP_003752223.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum PSI07]
 gi|299078288|emb|CBJ50936.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum PSI07]
          Length = 443

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 161/440 (36%), Gaps = 22/440 (5%)

Query: 46  FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
            R +  + L  L+   +  +      F  +S + LA+    +   +++            
Sbjct: 6   TRFAVAVALMGLVTMGLYFFVGHAVAFAAFSAMLLAMLLYYVYQLQRLWRVLESPA---- 61

Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISALSNFMLPYAV 163
                     A+GL W  +              + +          +I A  N +L    
Sbjct: 62  ----YGEIPSALGL-WGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGVLMLDG 116

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
                           +S           L     F  Y+    F+  + +      K  
Sbjct: 117 EDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRPEFVRYLARGEFEEPLTMRDMGPHKQS 176

Query: 224 LIAEL-----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278
           ++A       E  K L  +   + E     +  F+A++SHEL+TPL  + GF E +    
Sbjct: 177 IVAAQVLPYGEDRKLLVSQDITKLENTEAMRRDFVANVSHELKTPLTVLSGFLETVRDL- 235

Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338
             PL+ +  + Y+  +H     + +L+ ++L L+ +E      S + + +  ++ +    
Sbjct: 236 --PLSEDDKRRYLDMMHVQATRMQHLVEDLLALATLEGNSEPPSVTPVPMQRVMLQLQHD 293

Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398
            +  +  ++  I    DPS+ SV   E  +     NL+SNA+++T  GGR+ +       
Sbjct: 294 AEALSAGRH-AISMTCDPSV-SVCGAELELLSAFSNLVSNAIRYTPEGGRISLGWTAR-D 350

Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458
                ++ D G GIA   IP +   F +   +      G GLGL I + +++ HG    +
Sbjct: 351 GHAVFAVTDTGIGIAPEHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLSRHGADLQV 410

Query: 459 RSKLREGVEVIAILPNTRVL 478
            S+  +G    A  P  R +
Sbjct: 411 SSERGKGSTFRASFPPERTV 430


>gi|206889651|ref|YP_002248593.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741589|gb|ACI20646.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 457

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 141/271 (52%), Gaps = 7/271 (2%)

Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-NLAKSRFLASMSHELR 261
           I+  + + +   LS + ++ ++ +EL+   S  ++T    E   N  K +F++  SHELR
Sbjct: 184 ISESIGRISESNLSERVDEKNIPSELKGLASSFNQTFDSLERAFNRQK-QFVSDASHELR 242

Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321
           TPL+ IL  SE+         + E YK  +  I  + + +LN+I  +L L+R+ + R EL
Sbjct: 243 TPLSVILSHSEITLRR---ERSTEEYKNALIAIKDAAKIMLNMIERLLMLARLSSDRAEL 299

Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381
               I+L  I+++ + +L   A++K+I+I       L++ + D   + ++  N++ NA+K
Sbjct: 300 KFEEINLYSILKDVVKLLNPLAEQKDIKISIHGYEQLTT-FGDRASLLELFTNVVDNAIK 358

Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441
           +    G+V + +   +     I +KD G G+ E ++  V   F +   A     +G GLG
Sbjct: 359 YNIQQGKVDIYIK-ENQDYALIEVKDTGVGMPEEDLDKVFDRFYRIDKARSGGIKGAGLG 417

Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472
           L I + I+  HGG+  I+S++ EG  V   L
Sbjct: 418 LSICKEIVRLHGGKMEIKSRIGEGTTVSIYL 448


>gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
 gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
          Length = 919

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 146/355 (41%), Gaps = 18/355 (5%)

Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191
             P       +    +  + +   +  L   V  S   ++        ++       +  
Sbjct: 205 DAPFAAVYLHTPGTGLRRAATVGCDPGLLPEVAASPGELLPPAVAALGLTGGPFGDPVTE 264

Query: 192 MLATALSF-------FTYITYHLFKSNVKILSCQAEKDD--LIAELEVAKSLSDETRKRA 242
                L            +  +  ++         E       A +  A++ ++E R RA
Sbjct: 265 AAVLPLGVPDGDGVGALVVGLNPNRALDDEYRSFHELLAGQFTAAVRNARAYAEE-RARA 323

Query: 243 E---EENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLNNETYKEYIGDIHRSG 298
           E   E + AK+ F A++SHELRTPL  +LG  ++ +     GP+     +E +    R+G
Sbjct: 324 EALAELDQAKTAFFANVSHELRTPLTLLLGPIADTLAEN--GPVLPGDVRESLTLALRNG 381

Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
           Q L  L+N++L+   IEAGR         +     E   +L+  A+   + +     P  
Sbjct: 382 QRLQRLVNDLLEFVSIEAGRASAVRVQTDVAAYTAELAGVLRAAAERAGLRLTVDCPPLG 441

Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418
              + D +   +V+LNL++NAVK+T +GG + VT+         + + D G GI   E+P
Sbjct: 442 RPAYVDPRMWEKVVLNLVANAVKYTFVGG-IDVTLRADGDD-LVLQVCDTGVGIPAAELP 499

Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
            +   F +G      + +G GLGL + + ++A HGG+    S+   G      +P
Sbjct: 500 RLFERFHRGVGTAARSREGSGLGLALVRELVALHGGEVSATSEPGAGSTFTVRVP 554


>gi|260428952|ref|ZP_05782929.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
 gi|260419575|gb|EEX12828.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
          Length = 783

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 9/255 (3%)

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           +  I +  +      + ++RAE    AK+ FLA+MSHE+RTP+N I+G ++++    +  
Sbjct: 344 ERDITDARLRAIELADAKERAESGARAKAAFLATMSHEIRTPMNGIIGMADLLSDGAL-- 401

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
             +E  + Y+  I  S + LL +IN+ILD S++EA ++ +     SL   +R+   +L+ 
Sbjct: 402 --SEDQQLYVATIRTSAEALLKIINDILDYSKLEADKFAIVAEPFSLAACIRDAAGILRP 459

Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400
           +A EK + +    +  L  SV  D   +RQ+++NLL NAVKFTA GG V +T        
Sbjct: 460 QALEKGLFLDICHERPLPDSVLGDSGRLRQILINLLGNAVKFTATGG-VTLTTRVEGDDA 518

Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457
                ++++D+G G+A      +   F Q          G GLGL I++ +    GG   
Sbjct: 519 GVALTVTVQDSGIGVAPDRAERIFDQFEQADAETTRRFGGTGLGLAISRELAVRMGGGLR 578

Query: 458 IRSKLREGVEVIAIL 472
           +      G      L
Sbjct: 579 LVEGRGSGACFELTL 593


>gi|218440686|ref|YP_002379015.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173414|gb|ACK72147.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 466

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 128/311 (41%), Gaps = 11/311 (3%)

Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223
           F S    V+       +   V+   LA  LA  +         L   ++      +  D+
Sbjct: 167 FRSLLVTVLGTVMLTFLLCAVISAWLARSLALPILEMRNFAVRLGSGHLGENIYISRGDE 226

Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283
           L         +S+            +  FLA++SHELRTP++ +    E +         
Sbjct: 227 LGQLASELNRMSEL----LASVERERRAFLANVSHELRTPVSNVKVTLEALS--IGAASE 280

Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343
            E    +I         L  LI ++LDL R+EAG   L   ++SL  ++   I  ++LR 
Sbjct: 281 PELCDRFIQTAQNEINRLSRLIQDLLDLGRLEAGVAPLEIQSVSLRSLINRAIEAIELRT 340

Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403
               + I   +      +  D + M Q +LN+L NA+K++  G  V + +G+T    + I
Sbjct: 341 FHHGVNINNDVPD--LELNVDSERMLQALLNILENAIKYSPPGSTVSL-MGYTENNQKII 397

Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
            IKD G GI    +P +   F +   +      G GLGL I+Q I+  HGG     S L 
Sbjct: 398 QIKDEGIGIKPEALPHIFEEFYRSDSS--RQSDGTGLGLAISQRIIKAHGGTITADSVLG 455

Query: 464 EGVEVIAILPN 474
           EG  +I   P 
Sbjct: 456 EGTTIIISFPK 466


>gi|116872937|ref|YP_849718.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741815|emb|CAK20939.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 479

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 137/315 (43%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + +AL   AI+S   ++       AT           L ++N        
Sbjct: 170 RYMFYTILLSITIALILSAILSKLQVNRINKLRSATKDVIQGNYKARLKENNFD------ 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        +++++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 224 EIGALAIDFNKMTQTLEKSQEEIERQEKRRRQFIADVSHEMRTPLTTISGVTEGLVNDII 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 284 PKSETD---RCIALIDTEAKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQL 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK   I   ID  + +++AD   + QV +N++ N+V+FT   G++ +T G    +
Sbjct: 341 DYVATEKGNTITVNIDQDM-NIYADYDRLTQVFINIVKNSVQFT-ENGQITLT-GTQDYK 397

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 398 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISV 457

Query: 459 RSKLREGVEVIAILP 473
            SK  EG      LP
Sbjct: 458 TSKPNEGTTFTIRLP 472


>gi|325571334|ref|ZP_08146834.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325155810|gb|EGC68006.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 573

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300
           R  +    +  F+ ++SHEL+TP+ +++GF+E +        + ET + ++  I +    
Sbjct: 344 RIRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGA--KEDPETLQTFLEIIQKDAYR 401

Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360
           L NLI +I+ LS+ ++  ++  +  I+  +++++ +      A +K +    +  P    
Sbjct: 402 LKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAVKKQLTFQFEG-PEQFI 459

Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420
           +   ++ ++ ++ NL+ NAV ++  GG + ++      +     ++D G GI E +   +
Sbjct: 460 LSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQ-LLFQVQDQGIGIDEEDQERI 518

Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474
              F +   A      G GLGL I +      GG   + S  + G      LP 
Sbjct: 519 FERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLPL 572


>gi|172039318|ref|YP_001805819.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700772|gb|ACB53753.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 398

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 149/322 (46%), Gaps = 13/322 (4%)

Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233
           +    + +M+  +++L  +   A  +       L    V+ +    E+  +  +L+ A  
Sbjct: 82  IPIVVLTNMNDEELALEAVRRGAQDYLVKRHITL-DILVRSICYAIERKQMEKQLKKANQ 140

Query: 234 LSD---ETR----KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
             +   E R     +A+E N  KS F++ +SH+ R PLN IL  + ++E      L  + 
Sbjct: 141 DLEKRVEERTIQLLKAQELNQLKSEFVSILSHDFRNPLNTILLSAGLLEDS-HDQLTRDQ 199

Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
              Y   I ++ Q +  L++E+L L + +AG+ + + + + +    ++ I  L L  +EK
Sbjct: 200 QLSYFQMIRQAVQDMNQLLSEVLLLGKADAGKLKPNFNELDIKQFCQQIIYSLHLSCEEK 259

Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406
           N  +          +W DEK +  ++ NLL+NA+K++  GG+++V +     +     I+
Sbjct: 260 NQIMVSFKGELQGELW-DEKLLWHILQNLLNNALKYSPQGGKIYVDI-IAQEKTVTFRIQ 317

Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466
           D G GI++     +   F +       A  G GLGL I +  +  + GQ  + S+L +G 
Sbjct: 318 DQGIGISQESQKHLFEPFYRADNVENIA--GTGLGLSIVRKCVEAYQGQIFVDSQLGKGT 375

Query: 467 EVIAILPNTRVLNFIPEDNHES 488
               ILP  + +    E++ E 
Sbjct: 376 TFTVILPRQQPVMSKIEESMEQ 397


>gi|227072259|gb|ACL81480.3| ethylene receptor [Dimocarpus longan]
          Length = 740

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 134/300 (44%), Gaps = 34/300 (11%)

Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269
           S+  IL       DL+ E        D  R+ AE    A++ FLA M+HE+RTP++AI+ 
Sbjct: 308 SHAAILEESMRARDLLME---QNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIA 364

Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329
            S +++   + P      +  +  I +S   L  LIN++LDLSR+E G  +L     +L 
Sbjct: 365 LSSLLQETELTP----EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLELVTFNLH 420

Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR 388
              RE + +++  A  K + I   + P L      DEK + Q +LN++ NAVKF+   G 
Sbjct: 421 AAFREVLNLIKPIASVKKLMITLNLAPDLPEYAVGDEKRLLQTLLNVVGNAVKFSKE-GS 479

Query: 389 VHVTVGWTSGR-------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429
           V +T                             + +KD+G GI   +IP + T F Q   
Sbjct: 480 VSITAFVAKSESLRDSRAPDFFAMPSENHFYLRVQVKDSGTGINPQDIPKLFTKFAQNQT 539

Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHES 488
                  G GLGL I +  +    G   I S+ L +G   I I     V   IPE ++ES
Sbjct: 540 LATRNSGGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI-----VKLGIPEHSNES 594


>gi|226324179|ref|ZP_03799697.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
 gi|225207728|gb|EEG90082.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
          Length = 391

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 151/323 (46%), Gaps = 13/323 (4%)

Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225
                 +A+      +  ++ + + G + + +        ++ + N+     + EKDD +
Sbjct: 73  FIISACIAVVLILTFTAMIMMVWIYGSIISPIHKLQEAAQNVEEGNLN-FEIKPEKDDEM 131

Query: 226 AELEVA-KSLSDETRKRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
             L  A + +    R  AEE    +      ++++SH+L+TP+ AI G+ E I       
Sbjct: 132 GRLMQAFEKMRIRLRDNAEEKLKSDRESKELISNISHDLKTPITAIKGYVEGIRDGV--A 189

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
              E  ++YIG I+     +  LINE+   ++I+  R   + + +S+ D   +C   +++
Sbjct: 190 DTPEKMEKYIGTIYNKANEMDTLINELTLYAKIDTNRIPYNFAPLSVNDYFNDCAEDIEM 249

Query: 342 RAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGR 399
               KN+E  +         + AD + +++VI N++SN++K+     G +++ V    G 
Sbjct: 250 ELDSKNVEFGYFNYVEGDQKIIADPEQLKRVINNIVSNSLKYMEREHGLINLRVK-DVGD 308

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459
              + ++DNG GIA  ++P +   F +   +  S++ G G+GL I + I+ +HGG+    
Sbjct: 309 FIQVELEDNGKGIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEDHGGKIWAT 368

Query: 460 SKLREGVEVIAILPNTRVLNFIP 482
           S+   G  +  ++   R    +P
Sbjct: 369 SREGVGTVMYFVI---RKYQEVP 388


>gi|313618832|gb|EFR90715.1| sensor histidine kinase [Listeria innocua FSL S4-378]
          Length = 479

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 13/315 (4%)

Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219
            Y  +     + +AL   AI+S   ++       AT           L ++N        
Sbjct: 170 RYMFYTILLSITIALILSAILSKLQVNRINKLRSATKDVIQGNYKARLKENNFD------ 223

Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279
           E   L  +        + +++  E +   + +F+A +SHE+RTPL  I G +E +  + +
Sbjct: 224 EIGALAIDFNKMTETLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDII 283

Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339
                +     I  I    + L  L+NE LD  +I + + +L ++  +  + +      L
Sbjct: 284 PKSETD---RCIALIDTEAKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQL 340

Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399
              A EK  +I   ID  +  ++AD   + QV +N++ N V+FT   G + +T G    +
Sbjct: 341 DYVATEKGNKITVDIDKDM-YIYADYDRLTQVFINIVKNGVQFT-EHGLITLT-GTQDYK 397

Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458
              ++I D G G+   E+  +   F +  ++   +A    G+GL I + ++  H G   +
Sbjct: 398 ESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISV 457

Query: 459 RSKLREGVEVIAILP 473
            S+  +G      LP
Sbjct: 458 TSEPNKGTTFTIRLP 472


>gi|229134251|ref|ZP_04263066.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196]
 gi|228649181|gb|EEL05201.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196]
          Length = 429

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 140/327 (42%), Gaps = 12/327 (3%)

Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206
           +      L     P A F++ + +V A  T ++++  +L +  +  L   +   T  T  
Sbjct: 109 MGTKAIFLEALAPPSASFVTKWALVFA--TCSLIAGSLLILVASVFLVRPIKKLTKATKR 166

Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266
           +   +  +     +  +L           +E     ++    +  F+ ++SHE+++PL +
Sbjct: 167 IASGDFNVKLNIKQTSELGTLARSF----EEMMHDLQQLEQMRREFVTNVSHEVQSPLTS 222

Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326
           I G++ V++   +          Y+  I    + +  + + +L LS +E+   +L    +
Sbjct: 223 ISGYALVLKQVDLSEY---ERSRYLDIIIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTL 279

Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386
           SL + +R  I+ LQ +   ++I     +      V AD   + QV  N+L N++KF+   
Sbjct: 280 SLDEQIRRIIVALQPQWSARDIHFELDLQ--TVKVTADHDLLNQVWTNILRNSIKFSEDA 337

Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446
           G ++V++         I I D G GI   +   +   F +   +      G G+GL I +
Sbjct: 338 GVINVSIKQDIKN-VTILISDTGIGIHLDDQKRIFDRFFKADRSHSRKYDGSGMGLAIVK 396

Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473
            I++ H G   ++S+  +G   I  LP
Sbjct: 397 QIVSLHQGDIRVKSEPGQGTTFIVTLP 423


>gi|291532480|emb|CBL05593.1| Signal transduction histidine kinase [Megamonas hypermegale
           ART12/1]
          Length = 487

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 19/314 (6%)

Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221
             +     + +++    ++S  +L               + +     +   + +  Q   
Sbjct: 190 IFYAGLVGISISIVCGFLLSRRLLKPLR--------DITSTVKNIEIQDLNQRIKVQPTH 241

Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281
           D+L         + +    R ++    + +F++  SHELRTP   I G+S+++     G 
Sbjct: 242 DELEELANTFNLMLE----RLQKGFEQQRQFVSDASHELRTPATVICGYSDMLAR--WGK 295

Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341
            + +T  E I  IH    ++  LI ++L L+R +  R  L + +++L  ++ +     QL
Sbjct: 296 DDPQTADECITAIHSEAINMQRLIEKLLFLARADQKRQVLHKESLNLKPLIADIAKDTQL 355

Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401
            A +  I      D     ++ADE  +RQ++   L N++K+T  GG++ ++      +  
Sbjct: 356 IAPQHTITCTHNDDG---YIFADELVIRQMLRIFLDNSIKYTPDGGKITIS-SENKVKHM 411

Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRS 460
            + I D G GIA+ +   +   F +   A       G GLGL IA+ I   H  +  + S
Sbjct: 412 IVKISDTGIGIAKDKQDKIFERFYRVDSARTRNGVGGTGLGLSIAKWIADAHDIEIRLSS 471

Query: 461 KLREGVEVIAILPN 474
           KL +G  +I I+P 
Sbjct: 472 KLNKGTTIILIIPK 485


>gi|326202142|ref|ZP_08192012.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987937|gb|EGD48763.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 462

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 132/305 (43%), Gaps = 11/305 (3%)

Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229
           ++ A+   +++   +    ++  L + ++        + K        +      I +L 
Sbjct: 168 LLWAVGIFSLILSLLFGTVMSKRLVSPIARVINTAKAISKGFYSDRIKEKSNTREINQLT 227

Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289
           V  +   E  ++ E   + + R    ++HELRTPL  +    E +        +     E
Sbjct: 228 VTINDLAENMEKQE---ILRKRLTGDVAHELRTPLATLQSHLEAMMDGIWPADS-----E 279

Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349
            +   H     +  ++ ++  L+R E+  + L+     + ++ +  I   +     K +E
Sbjct: 280 RLKSCHEEIVRISKMVGDLEKLARYESENFVLNMDTFDITELAKRQIHNFESEFLSKGLE 339

Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409
           +          V+AD+  + QV++NLLSNA+K+T  GG V + + +       IS+ DNG
Sbjct: 340 LKLTGADC--RVYADKDKISQVLVNLLSNALKYTPEGGMVVINIQYNDVNT-EISVTDNG 396

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469
           PGI   ++P +   F +   +      G G+GL I +SI+  HGG   ++S + +G +  
Sbjct: 397 PGIPGEDLPYIFERFYRADKSRNKLTGGSGIGLAICKSIVLAHGGSINVQSNIGKGTKFT 456

Query: 470 AILPN 474
             +P 
Sbjct: 457 FTIPK 461


>gi|254429150|ref|ZP_05042857.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195319|gb|EDX90278.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 1224

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 37/306 (12%)

Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---------------------KRA 242
           T  L  S   + + Q E      ELE    +  E +                     +  
Sbjct: 487 TQALRASEESLQAQQEELRVTNEELEAQARMLTEQKSEMAQKNDELELLRHELEDKIREL 546

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E  +  KS FL++MSHELRTPLN+IL  S  +     G L  E   E+   IH +G  LL
Sbjct: 547 EMSSRYKSEFLSTMSHELRTPLNSILILSNALGQNKRGNL-EEKQVEHAQVIHSAGADLL 605

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361
           +LIN+ILD+S+IE G+ ++    +S  +I+          A+ +N++   ++  +L    
Sbjct: 606 SLINDILDISKIEEGKMDVIIDDLSPPEIIEHFRRNFAHVAESRNLDFKVELGDTLPEHF 665

Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNG 409
           + D + + Q+I NLLSNA+KFT   G V +++                G+    ++ D G
Sbjct: 666 YTDRQRLEQIIKNLLSNALKFTEQ-GSVTLSITQPDVSETLPSRHLVPGQTLKFAVIDTG 724

Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468
            GIA+ +   +  +F Q          G GLGL I++ +    GG+  + S    +G   
Sbjct: 725 TGIADEKQKLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLHSDGEGQGATF 784

Query: 469 IAILPN 474
           +  LP 
Sbjct: 785 MLYLPV 790


>gi|182625795|ref|ZP_02953562.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
 gi|177908951|gb|EDT71438.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
          Length = 473

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302
           E+EN+ K R    +SHEL+TPL  I    E +      P      +E +  +    + L 
Sbjct: 248 EQENIRK-RLTGDISHELKTPLTNIQSHLEAMIDGIWEPT-----EERLLSVKEEAERLS 301

Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362
           +L++++  L++ +    +L +  +++ DI+   I      A+ +NI+I  + +    +++
Sbjct: 302 SLVSDMQKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSRNIKI--EYEKKNINLY 359

Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
            D+  + Q ++N+LSNA++++  G  + +           ISI+D G GI+E ++  V  
Sbjct: 360 CDKDKITQALVNILSNAIRYSNEGSTIFIE-EKLKDNKVIISIEDQGIGISEEDLKYVFE 418

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477
            F +   +   A  G G+GL I +SI+++HGG+  + SKL EG +   ILP   +
Sbjct: 419 RFYRADKSRTRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPKEDI 473


>gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
 gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
          Length = 1384

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 138/299 (46%), Gaps = 10/299 (3%)

Query: 179  IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238
            I + ++ ++++  +     +++ YI Y L      I   +  K+ ++   E+     ++ 
Sbjct: 796  IWNGYIREMTVVVLPPFWATWWAYILYLLIVIGTVIGLYRITKNRILLRNELRLRELEKA 855

Query: 239  RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298
            +  AEE N AK +F  +++HEL TPL  I    + ++      +    + +    ++ + 
Sbjct: 856  K--AEELNHAKLQFFTNITHELLTPLTIISATVDELK------IQAPKHTDLYVVMNSNI 907

Query: 299  QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358
            + L+ L+ +IL+  + E G   L  S   +   V+      Q   +++ I      DP  
Sbjct: 908  RRLIRLLQQILEFRKAETGNLRLRVSPGDIASFVKNGAESFQPLIKKQKIHFSVLCDPES 967

Query: 359  SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEI 417
               + D   + +++ NLLSNA K+T   G + VT+ +  +     + +KDNG GI++ + 
Sbjct: 968  IIGYFDTDKLDKILYNLLSNAAKYTKEDGFIQVTLSYAENKDWVLLRVKDNGKGISKEKQ 1027

Query: 418  PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476
             T+   F +G    K    G G+GL + + ++  H G   + S+  +G E I  LP  R
Sbjct: 1028 KTLFRRFYEGDY-RKFNTIGTGIGLSLTKDLVELHEGTITVESEEGQGTEFIIRLPIDR 1085


>gi|330973560|gb|EGH73626.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 745

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 160/362 (44%), Gaps = 13/362 (3%)

Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179
            W ++   EP   +    ++Y  A     ++   L    LP  V          +     
Sbjct: 390 AW-MIAGGEPVYASHHLSSVYAPAEAYQPVASGVL-AMSLPKPVDNGVIWFRPEVKETVQ 447

Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--DE 237
            S            A  +      ++ ++K  +  ++ +    D+ A  ++ +S    D 
Sbjct: 448 WSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEMTGIATKWSYGDVFAANDLRRSALENDL 507

Query: 238 TR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE--TMGPLNNETYKEYIGD 293
            R  +R ++   A+   +A +SH+LR P+  I     +++    + GP  +      I  
Sbjct: 508 ARQVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTAIDT 567

Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353
           + ++   +  L+ ++LD S+IEAGRY ++   + +  I  E   +L   A +K+IEI   
Sbjct: 568 MQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFN 627

Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413
            +P L  V AD + + QV+ NL+ NA+KFT   G + V    ++G     +++D+G GI 
Sbjct: 628 AEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGV-AAMSNGTEIVFTVRDSGEGIP 685

Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473
             ++P +   +        +   G GLGL I+Q I+  HGG+ + +S++ EG E    +P
Sbjct: 686 PEQLPHIFERYWTVKEGNPT---GTGLGLYISQGIVKAHGGELVAQSRVGEGSEFRFTVP 742

Query: 474 NT 475
             
Sbjct: 743 MA 744


>gi|323190649|gb|EFZ75919.1| TMAO reductase sytem sensor TorS [Escherichia coli RN587/1]
          Length = 900

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 18/344 (5%)

Query: 153 ALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           AL   +          P+     + Q ++   +            L     +      S 
Sbjct: 333 ALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392

Query: 212 VKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +   +    A+     AEL+       + R  AE+ + AKS FLA+MSHE+RTPL  I
Sbjct: 393 HALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGI 452

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG--RYELSESA 325
           LG ++++             ++ +  I  SG+ LL ++N+ILD S IEAG     +S+  
Sbjct: 453 LGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEP 508

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
                ++   + ++  R + + I +  +I   + + +  D + +RQVI NLLSNA++FT 
Sbjct: 509 FEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVITNLLSNALRFTD 568

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + +    T G    + ++D+G GI   ++  +   F Q S        G GLGL I
Sbjct: 569 E-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR----GGTGLGLTI 622

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +  +    GG+    S    G      LP       +P+  +++
Sbjct: 623 SSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|320196519|gb|EFW71142.1| Sensor protein torS [Escherichia coli WV_060327]
          Length = 900

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 18/344 (5%)

Query: 153 ALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211
           AL   +          P+     + Q ++   +            L     +      S 
Sbjct: 333 ALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392

Query: 212 VKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267
             +   +    A+     AEL+       + R  AE+ + AKS FLA+MSHE+RTPL  I
Sbjct: 393 HALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGI 452

Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG--RYELSESA 325
           LG ++++             ++ +  I  SG+ LL ++N+ILD S IEAG     +S+  
Sbjct: 453 LGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEP 508

Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384
                ++   + ++  R + + I +  +I   + + +  D + +RQVI NLLSNA++FT 
Sbjct: 509 FEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTALMGDPRRIRQVITNLLSNALRFTD 568

Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444
             G + +    T G    + ++D+G GI   ++  +   F Q S        G GLGL I
Sbjct: 569 E-GHIILR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR----GGTGLGLTI 622

Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
           +  +    GG+    S    G      LP       +P+  +++
Sbjct: 623 SSRLAQAMGGELSATSTPEVGSCFCLRLPLRIATAPVPKTVNQA 666


>gi|262278732|ref|ZP_06056517.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259083|gb|EEY77816.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 1154

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 163/320 (50%), Gaps = 23/320 (7%)

Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231
           A     + ++ V   ++  +L +  +++  +     + + ++     A   D IA  EV 
Sbjct: 607 AEGVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 666

Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291
                + R  AE  N AKSR++  +SHELRTPLN+ILG+S++++ +      +E  K  +
Sbjct: 667 SKDLQDARISAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723

Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351
           G I RSGQHL +LI+ +LDL+RIE G+  L+   +   + + + I M Q + ++KN++  
Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFI 783

Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410
            +I  +L   V  D+K + QV++NLL NA+KFT   G + + V +   +  Y  I+D G 
Sbjct: 784 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841

Query: 411 GIAEGEIPTVLTSFGQGSI-------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463
           GIAE ++  +   F +GS                      I + ++   GGQ  + S+L 
Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGTGLGLP-------IVKLLVDLLGGQLSVSSQLN 894

Query: 464 EGVEV--IAILPNTRVLNFI 481
           +G +      LP+  V++ I
Sbjct: 895 QGSQFKIKFYLPSKEVVHPI 914


>gi|209774104|gb|ACI85364.1| sensor protein torS [Escherichia coli]
          Length = 904

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 18/356 (5%)

Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSF 199
            S  LL  +S+ AL   +          P+     + Q ++   +            L  
Sbjct: 321 YSLLLLGIVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDT 380

Query: 200 FTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255
              +      S   +   +    A+     AEL+       + R  AE+ + AKS FLA+
Sbjct: 381 IGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440

Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315
           MSHE+RTPL  ILG ++++             ++ +  I  SG+ LL ++N+ILD S IE
Sbjct: 441 MSHEIRTPLYGILGTAQLLADNPALN----AQRDDLRAITDSGESLLTILNDILDYSAIE 496

Query: 316 AG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372
           AG     +S+       ++   + ++  R + + I +   I   + + +  D + +RQVI
Sbjct: 497 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI 556

Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432
            NLLSNA++FT   G++ +    T G    + ++D+G GI   ++  +   F Q S    
Sbjct: 557 TNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFIQVSGKR- 613

Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
               G GLGL I+  +    GG+    S    G      LP       +P+  +++
Sbjct: 614 ---GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQA 666


>gi|117618906|ref|YP_855570.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560313|gb|ABK37261.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1142

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 8/242 (3%)

Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306
             K+ FLA+MSHE+RTP+N I+G +E +   ++    +   ++ +G I++  + LL LI 
Sbjct: 560 RQKADFLATMSHEIRTPMNGIIGMAEQLRFTSL----DPEQRQMVGIINQGAEGLLQLIG 615

Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365
            +LD S+++AG+  L+ ++  L +++   + M     Q K ++++ ++D  + +  + D 
Sbjct: 616 NVLDYSKLDAGKMALAPTSFLLRELIDSVLTMTSSELQRKGLQLYLRVDDEVGARFYGDV 675

Query: 366 KGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422
             ++QV+ NL SNA+KFT  G     + V       +   + ++D G G++E     V  
Sbjct: 676 LRLKQVLFNLASNAIKFTERGFIELSIRVEGETDEEQWLLLGVQDTGIGMSEDVQARVFN 735

Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482
           +F Q   A   +  G GLGL I+Q++    GG+  + S    G  +   +P      + P
Sbjct: 736 AFEQADGATTRSYGGTGLGLSISQTLATLMGGRLRLESAPGLGTHIGLSIPLALEARYEP 795

Query: 483 ED 484
           + 
Sbjct: 796 DP 797


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.151    0.435 

Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,437,352,850
Number of Sequences: 14124377
Number of extensions: 275040309
Number of successful extensions: 1575923
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 61521
Number of HSP's successfully gapped in prelim test: 27659
Number of HSP's that attempted gapping in prelim test: 1277956
Number of HSP's gapped (non-prelim): 123821
length of query: 495
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 352
effective length of database: 2,823,007,719
effective search space: 993698717088
effective search space used: 993698717088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 84 (36.8 bits)